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nixpkgs/pkgs/applications/science/biology
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Ryan Mulligan 4ce30eb63a Merge pull request #105672 from r-ryantm/auto-update/hmmer 
hmmer: 3.3.1 -> 3.3.2
2020-12-02 05:45:57 -08:00
..
ants
ants: unbreak on Darwin
2020-12-01 14:17:54 -05:00
aragorn
aragorn: fix build on darwin
2020-09-23 20:45:21 -07:00
bayescan
bayescan: init at 2.1 (#68191)
2020-01-09 12:38:53 -05:00
bcftools
bcftools: 1.10.2 -> 1.11
2020-09-24 18:53:07 +00:00
bedtools
treewide: remove periods from end of package descriptions
2020-10-17 08:22:31 -07:00
bftools
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
blast
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
bowtie2
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
bppsuite
bppsuite: init at 2.4.1
2020-05-25 21:13:02 -04:00
bwa
bwa: expand supported platforms
2020-11-30 09:46:51 +11:00
cd-hit
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
clustal-omega
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
cmtk
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
conglomerate
conglomerate: update LIBMINC_DIR to reflect libminc CMake changes
2020-10-06 15:31:18 -04:00
dcm2niix
treewide: remove package names from prefix of descriptions
2020-10-27 09:15:07 -07:00
deeptools
deeptools: Fix tests
2020-11-25 21:36:37 +01:00
delly
delly: 0.8.2 -> 0.8.5
2020-10-01 18:09:53 +10:00
diamond
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
ecopcr
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
eggnog-mapper
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
emboss
emboss: fix license
2020-06-26 11:05:24 +02:00
est-sfs
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
exonerate
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
EZminc
EZminc: update LIBMINC_DIR to reflect libminc CMake changes
2020-10-06 15:31:18 -04:00
freebayes
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
hisat2
hisat2: 2.1.0 -> 2.2.1
2020-08-16 13:30:53 +00:00
hmmer
hmmer: 3.3.1 -> 3.3.2
2020-12-02 09:00:15 +00:00
igv
igv: 2.8.12 -> 2.8.13
2020-11-28 02:18:00 +00:00
inormalize
inormalize: update LIBMINC_DIR and dependencies due to libminc update
2020-10-06 15:31:16 -04:00
itsx
itsx: enable on darwin
2020-07-28 13:48:55 -05:00
iv
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
kallisto
treewide: remove package names from prefix of descriptions
2020-10-27 09:15:07 -07:00
kent
kent: init at 404
2020-10-01 19:50:37 +02:00
kssd
kssd: 1.0 -> 1.1
2020-08-14 15:06:11 +00:00
last
last: 1133 -> 1145
2020-11-13 23:30:53 +00:00
lumpy
lumpy: 0.3.0 -> 0.3.1
2020-10-30 01:28:00 +01:00
macse
macse: init at 2.03
2019-09-24 08:24:07 +02:00
manta
manta: init 1.6.0
2020-01-24 02:02:19 -08:00
megahit
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
messer-slim
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
migrate
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
minc-tools
minc_tools: unstable-2019-12-04 -> unstable-2020-07-25
2020-10-06 15:31:14 -04:00
minc-widgets
…
minia
minia: init at 3.2.1
2019-12-20 11:27:04 +11:00
minimap2
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
mni_autoreg
mni_autoreg: update LIBMINC_DIR due to CMake changes in libminc
2020-10-06 15:31:17 -04:00
mosdepth
Merge pull request #98363 from jbedo/mosdepth
2020-11-25 23:55:47 +01:00
mrbayes
mrbayes: fix license
2020-06-26 11:06:35 +02:00
mrtrix
mrtrix: 3.0.0 -> 3.0.2
2020-09-30 22:13:18 -04:00
muscle
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
N3
n3: 2017-09-18 -> 2018-08-09
2020-10-06 15:31:16 -04:00
ncbi-tools
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
neuron
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
niftyreg
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
niftyseg
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
obitools
init at 3.0.0-beta14
2020-04-24 11:20:14 +02:00
octopus
octopus-caller: 0.6.3 -> 0.7.0
2020-09-22 08:43:04 +10:00
paml
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
picard-tools
picard-tools: 2.23.4 -> 2.23.8
2020-11-04 04:53:50 +00:00
platypus
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
plink-ng
treewide: use blas and lapack
2020-04-17 16:24:09 -05:00
poretools
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
prodigal
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
quast
Quast: init at 5.0.2
2020-04-24 10:11:54 +02:00
raxml
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
sambamba
sambamba: init 0.7.1
2020-07-05 09:10:21 +10:00
samblaster
samblaster: 0.1.24 -> 0.1.26
2020-11-12 01:43:02 +00:00
samtools
samtools: 1.10 -> 1.11
2020-10-29 18:27:22 +01:00
seaview
seaview: 5.0.2 -> 5.0.4
2020-07-07 13:30:35 +00:00
snpeff
treewide: remove periods from end of package descriptions
2020-10-17 08:22:31 -07:00
somatic-sniper
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
sortmerna
sortmerna: 3.0.3 -> 4.2.0
2020-07-18 18:06:23 +02:00
spades
SPAdes: 3.14.0 -> 3.14.1
2020-05-10 13:06:19 +00:00
stacks
stacks: 2.52 -> 2.53
2020-05-10 09:37:29 -07:00
star
star: 2.7.5c -> 2.7.6a
2020-11-23 20:40:05 +01:00
strelka
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
sumatools
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
svaba
svaba: init at 1.1.0
2019-12-08 14:51:05 +01:00
tebreak
tebreak: Fix tests
2020-11-25 21:36:38 +01:00
trimal
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
truvari
truvari: 1.3.4 -> 2.0.2, fixing build
2020-09-20 12:25:17 +01:00
varscan
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
vcftools
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
whisper
whisper: init at 2.0.1
2020-07-06 18:59:45 +10:00
xenomapper
python.pkgs wide: fix problematic urls
2020-01-10 21:02:12 -08:00