tebreak: Fix tests
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@ -1,5 +1,5 @@
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{ stdenv, fetchFromGitHub, last, exonerate, minia, python3Packages, bwa
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, samtools, findutils }:
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, samtools, findutils, python }:
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python3Packages.buildPythonApplication rec {
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pname = "tebreak";
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@ -32,6 +32,12 @@ python3Packages.buildPythonApplication rec {
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done
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'';
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checkPhase = ''
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$out/bin/tebreak -b test/data/example.ins.bam -r test/data/Homo_sapiens_chr4_50000000-60000000_assembly19.fasta -p 4 --pickle test/example.pickle --detail_out test/example.tebreak.detail.out -i lib/teref.human.fa
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pushd test
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${python.interpreter} checktest.py
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'';
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meta = with stdenv.lib; {
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description = "Find and characterise transposable element insertions";
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homepage = "https://github.com/adamewing/tebreak";
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