python3Packages.pandas: 1.2.2 -> 1.2.3
This commit is contained in:
parent
9ea8a0fd1c
commit
dd567e6046
@ -1,4 +1,5 @@
|
||||
{ lib, stdenv
|
||||
{ lib
|
||||
, stdenv
|
||||
, buildPythonPackage
|
||||
, fetchPypi
|
||||
, python
|
||||
@ -8,37 +9,41 @@
|
||||
, cython
|
||||
, dateutil
|
||||
, html5lib
|
||||
, jinja2
|
||||
, lxml
|
||||
, numexpr
|
||||
, openpyxl
|
||||
, pytz
|
||||
, sqlalchemy
|
||||
, scipy
|
||||
, sqlalchemy
|
||||
, tables
|
||||
, xlrd
|
||||
, xlwt
|
||||
# Test Inputs
|
||||
# Test inputs
|
||||
, glibcLocales
|
||||
, hypothesis
|
||||
, pytestCheckHook
|
||||
, pytest-xdist
|
||||
, pytest-asyncio
|
||||
, XlsxWriter
|
||||
# Darwin inputs
|
||||
, runtimeShell
|
||||
, libcxx ? null
|
||||
, libcxx
|
||||
}:
|
||||
|
||||
buildPythonPackage rec {
|
||||
pname = "pandas";
|
||||
version = "1.2.2";
|
||||
version = "1.2.3";
|
||||
|
||||
src = fetchPypi {
|
||||
inherit pname version;
|
||||
sha256 = "14ed84b463e9b84c8ff9308a79b04bf591ae3122a376ee0f62c68a1bd917a773";
|
||||
sha256 = "078b4nncn6778ymmqn80j2q6n7fcs4d6bbaraar5nypgbaw10vyz";
|
||||
};
|
||||
# See https://github.com/scipy/scipy/issues/13585 and https://github.com/pandas-dev/pandas/pull/40020
|
||||
patches = [ ./fix-tests.patch ];
|
||||
|
||||
nativeBuildInputs = [ cython ];
|
||||
|
||||
buildInputs = lib.optional stdenv.isDarwin libcxx;
|
||||
|
||||
propagatedBuildInputs = [
|
||||
beautifulsoup4
|
||||
bottleneck
|
||||
@ -55,58 +60,57 @@ buildPythonPackage rec {
|
||||
xlwt
|
||||
];
|
||||
|
||||
checkInputs = [ pytestCheckHook glibcLocales hypothesis ];
|
||||
checkInputs = [
|
||||
glibcLocales
|
||||
hypothesis
|
||||
jinja2
|
||||
pytest-asyncio
|
||||
pytest-xdist
|
||||
pytestCheckHook
|
||||
XlsxWriter
|
||||
];
|
||||
|
||||
# doesn't work with -Werror,-Wunused-command-line-argument
|
||||
# Doesn't work with -Werror,-Wunused-command-line-argument
|
||||
# https://github.com/NixOS/nixpkgs/issues/39687
|
||||
hardeningDisable = lib.optional stdenv.cc.isClang "strictoverflow";
|
||||
|
||||
# Parallel Cythonization is broken in Python 3.8 on Darwin. Fixed in the next
|
||||
# release. https://github.com/pandas-dev/pandas/pull/30862
|
||||
setupPyBuildFlags = lib.optionals (!(isPy38 && stdenv.isDarwin)) [
|
||||
# As suggested by
|
||||
# https://pandas.pydata.org/pandas-docs/stable/development/contributing.html#creating-a-python-environment
|
||||
"--parallel=$NIX_BUILD_CORES"
|
||||
];
|
||||
# For OSX, we need to add a dependency on libcxx, which provides
|
||||
# `complex.h` and other libraries that pandas depends on to build.
|
||||
postPatch = lib.optionalString stdenv.isDarwin ''
|
||||
cpp_sdk="${libcxx}/include/c++/v1";
|
||||
echo "Adding $cpp_sdk to the setup.py common_include variable"
|
||||
substituteInPlace setup.py \
|
||||
--replace "['pandas/src/klib', 'pandas/src']" \
|
||||
"['pandas/src/klib', 'pandas/src', '$cpp_sdk']"
|
||||
'';
|
||||
|
||||
doCheck = !stdenv.isAarch64; # upstream doesn't test this architecture
|
||||
|
||||
pytestFlagsArray = [
|
||||
"--skip-slow"
|
||||
"--skip-network"
|
||||
"--numprocesses" "0"
|
||||
];
|
||||
|
||||
disabledTests = [
|
||||
# since dateutil 0.6.0 the following fails: test_fallback_plural, test_ambiguous_flags, test_ambiguous_compat
|
||||
# was supposed to be solved by https://github.com/dateutil/dateutil/issues/321, but is not the case
|
||||
"test_fallback_plural"
|
||||
"test_ambiguous_flags"
|
||||
"test_ambiguous_compat"
|
||||
# Locale-related
|
||||
"test_names"
|
||||
"test_dt_accessor_datetime_name_accessors"
|
||||
"test_datetime_name_accessors"
|
||||
# Can't import from test folder
|
||||
"test_oo_optimizable"
|
||||
# Disable IO related tests because IO data is no longer distributed
|
||||
"io"
|
||||
# KeyError Timestamp
|
||||
"test_to_excel"
|
||||
# ordering logic has changed
|
||||
"numpy_ufuncs_other"
|
||||
"order_without_freq"
|
||||
# tries to import from pandas.tests post install
|
||||
# Tries to import from pandas.tests post install
|
||||
"util_in_top_level"
|
||||
# Fails with 1.0.5
|
||||
"test_constructor_list_frames"
|
||||
"test_constructor_with_embedded_frames"
|
||||
# tries to import compiled C extension locally
|
||||
# Tries to import compiled C extension locally
|
||||
"test_missing_required_dependency"
|
||||
# AssertionError with 1.2.3
|
||||
"test_from_coo"
|
||||
] ++ lib.optionals stdenv.isDarwin [
|
||||
"test_locale"
|
||||
"test_clipboard"
|
||||
];
|
||||
|
||||
# tests have relative paths, and need to reference compiled C extensions
|
||||
# Tests have relative paths, and need to reference compiled C extensions
|
||||
# so change directory where `import .test` is able to be resolved
|
||||
preCheck = ''
|
||||
cd $out/${python.sitePackages}/pandas
|
||||
@ -123,6 +127,8 @@ buildPythonPackage rec {
|
||||
export PATH=$(pwd):$PATH
|
||||
'';
|
||||
|
||||
pythonImportsCheck = [ "pandas" ];
|
||||
|
||||
meta = with lib; {
|
||||
# https://github.com/pandas-dev/pandas/issues/14866
|
||||
# pandas devs are no longer testing i686 so safer to assume it's broken
|
||||
|
@ -1,12 +0,0 @@
|
||||
diff --color -ur a/pandas/tests/arrays/sparse/test_array.py b/pandas/tests/arrays/sparse/test_array.py
|
||||
--- a/pandas/tests/arrays/sparse/test_array.py 2020-12-07 12:42:08.000000000 +0100
|
||||
+++ b/pandas/tests/arrays/sparse/test_array.py 2021-02-27 21:48:16.483903149 +0100
|
||||
@@ -1188,7 +1188,7 @@
|
||||
row = [0, 3, 1, 0]
|
||||
col = [0, 3, 1, 2]
|
||||
data = [4, 5, 7, 9]
|
||||
- sp_array = scipy.sparse.coo_matrix((data, (row, col)))
|
||||
+ sp_array = scipy.sparse.coo_matrix((data, (row, col)), dtype="int")
|
||||
result = pd.Series.sparse.from_coo(sp_array)
|
||||
|
||||
index = pd.MultiIndex.from_arrays([[0, 0, 1, 3], [0, 2, 1, 3]])
|
Loading…
x
Reference in New Issue
Block a user