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jags: 3.4.0 -> 4.1.0 (#16804) 

* jags: 3.4.0 -> 4.1.0
* unbreak rjags and dependent packages
This commit is contained in:
Ben Darwin 2016-07-18 07:11:18 -04:00 committed by Robin Gloster
parent 63884c7d10
commit a896233396
2 changed files with 5 additions and 26 deletions
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4
pkgs/applications/science/math/jags/default.nix
View File

@ -1,10 +1,10 @@
{stdenv, fetchurl, gfortran, openblas}:
stdenv.mkDerivation rec {
name = "JAGS-3.4.0";
name = "JAGS-4.1.0";
src = fetchurl {
url = "mirror://sourceforge/mcmc-jags/${name}.tar.gz";
sha256 = "0ayqsz9kkmbss7mxlwr34ch2z1vsb65lryjzqpprab1ccyiaksib";
sha256 = "08pmrnbwibc0brgn5cx860jcl0s2xaw4amw7g45649r1bcdz7v25";
};
buildInputs = [gfortran openblas];
configureFlags = [ "--with-blas=-lopenblas" "--with-lapack=-lopenblas" ];

27
pkgs/development/r-modules/default.nix
View File

@ -1137,18 +1137,7 @@ let
"choroplethr" # depends on broken package acs
"acs" # broken build
"spray" # depends on broken package partitions
"simmr" # depends on broken package rjags
"morse" # depends on broken package rjags
"gemtc" # depends on broken package rjags
"EasyMARK" # depends on broken package rjags
"PVAClone" # depends on broken package rjags
"sharx" # depends on broken package rjags
"dcmle" # depends on broken package rjags
"dclone" # depends on broken package rjags
"CNVrd2" # depends on broken package rjags
"bayescount" # depends on broken package rjags
"BANOVA" # depends on broken package rjags
"rjags" # broken build
"CNVrd2" # broken build
"proteoQC" # depends on broken package rTANDEM
"PGA" # depends on broken package rTANDEM
"MBESS" # depends on broken package OpenMx
@ -1211,13 +1200,11 @@ let
"ARTool" # depends on broken package nlopt
"AssetPricing" # broken build
"AtelieR" # broken build
"auRoc" # depends on broken package rjags
"auRoc" # depends on broken package MBESS
"AutoModel" # depends on broken package car
"bamdit" # broken build
"BANOVA" # broken build
"bapred" # depends on broken package lme4
"bartMachine" # depends on broken package nlopt
"bayescount" # broken build
"bayesDem" # depends on broken package nlopt
"bayesLife" # depends on broken package nlopt
"BayesMed" # broken build
@ -1283,7 +1270,6 @@ let
"covmat" # depends on broken package VIM
"cplexAPI" # build is broken
"cquad" # depends on broken package car
"crmPack" # depends on broken package rjags
"CrypticIBDcheck" # depends on broken package nlopt
"ctsem" # depends on broken package OpenMx
"cudaBayesreg" # build is broken
@ -1293,7 +1279,7 @@ let
"datafsm" # depends on broken package caret
"dbConnect" # broken build
"DBKGrad" # depends on broken package rpanel
"dcmle" # broken build
#"dcmle" # broken build
"ddst" # broken build
"Deducer" # depends on broken package nlopt
"DeducerExtras" # depends on broken package nlopt
@ -1318,7 +1304,6 @@ let
"drsmooth" # depends on broken package nlopt
"dynlm" # depends on broken package nlopt
"easyanova" # depends on broken package nlopt
"EasyMARK" # broken build
"ecd" # depends on broken package polynom
"edge" # depends on broken package nlopt
"eeptools" # depends on broken package nlopt
@ -1370,7 +1355,6 @@ let
"gcmr" # depends on broken package nlopt
"GDAtools" # depends on broken package nlopt
"gdtools" # broken build
"gemtc" # broken build
"GENE_E" # depends on broken package rhdf5
"GENESIS" # broken build
"genridge" # depends on broken package nlopt
@ -1499,7 +1483,6 @@ let
"mlVAR" # depends on broken package nlopt
"MM" # broken build
"mongolite" # build is broken
"morse" # broken build
"mosaic" # depends on broken package nlopt
"mpoly" # broken build
"mRMRe" # broken build
@ -1577,7 +1560,6 @@ let
"PSAboot" # depends on broken package nlopt
"ptw" # depends on broken nloptr
"PurBayes" # broken build
"PVAClone" # broken build
"pvca" # depends on broken package nlopt
"PythonInR" # broken build
"QFRM" # broken build
@ -1664,7 +1646,6 @@ let
"Rgnuplot" # broken build
"rhdf5" # build is broken
"rjade" # depends on broken package V8
"rjags" # broken build
"rJPSGCS" # build is broken
"rLindo" # build is broken
"RLRsim" # depends on broken package lme4
@ -1724,10 +1705,8 @@ let
"seqHMM" # depends on broken package nloptr
"seqTools" # build is broken
"SharpeR" # broken build
"sharx" # broken build
"shinyTANDEM" # depends on broken package rTANDEM
"SIBER" # broken build
"simmr" # broken build
"simPop" # depends on broken package VIM
"simr" # depends on broken package lme4
"SJava" # broken build