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Merge pull request #63488 from jbedo/octopus 

octopus: init 0.6.3-beta
This commit is contained in:
markuskowa 2019-06-27 12:43:25 +02:00 committed by GitHub
parent fdf2700c32 b8b71aaaf9
commit a07d045b00
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2 changed files with 32 additions and 0 deletions
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30
pkgs/applications/science/biology/octopus/default.nix Normal file
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@ -0,0 +1,30 @@
{stdenv, fetchFromGitHub, cmake, boost, gmp, htslib, zlib, lzma, pkg-config}:
stdenv.mkDerivation rec {
pname = "octopus";
version = "0.6.3-beta";
name = "${pname}-${version}";
src = fetchFromGitHub {
owner = "luntergroup";
repo = "octopus";
rev = "v${version}";
sha256 = "042fycg8ppld7iajpzq2d8h8wr0nw43zbl57y125sfihryvr373n";
};
nativeBuildInputs = [ cmake pkg-config ];
buildInputs = [ boost gmp htslib zlib lzma ];
postInstall = ''
mkdir $out/bin
mv $out/octopus $out/bin
'';
meta = with stdenv.lib; {
description = "Bayesian haplotype-based mutation calling";
license = licenses.mit;
homepage = "https://github.com/luntergroup/octopus";
maintainers = with maintainers; [ jbedo ];
platforms = platforms.x86_64;
};
}

2
pkgs/top-level/all-packages.nix
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@ -22433,6 +22433,8 @@ in
niftyseg = callPackage ../applications/science/biology/niftyseg { };
octopus-caller = callPackage ../applications/science/biology/octopus { };
paml = callPackage ../applications/science/biology/paml { };
picard-tools = callPackage ../applications/science/biology/picard-tools { };