cytoscape: init at 3.4.0

Closes #16197

pkgs/applications/science/misc/cytoscape/default.nix

@@ -0,0 +1,33 @@
+{ stdenv, fetchurl, jre, makeWrapper }:
+
+stdenv.mkDerivation rec {
+  name = "cytoscape-${version}";
+  version = "3.4.0";
+
+  src = fetchurl {
+    url = "http://chianti.ucsd.edu/${name}/${name}.tar.gz";
+    sha256 = "065fsqa01w7j85nljwwc0677lfw112xphnyn1c4hb04166q082p2";
+  };
+
+  buildInputs = [jre makeWrapper];
+
+  installPhase = ''
+    mkdir -pv $out/{share,bin}
+    cp -Rv * $out/share/
+
+    ln -s $out/share/cytoscape.sh $out/bin/cytoscape
+
+    wrapProgram $out/share/gen_vmoptions.sh \
+      --set JAVA_HOME "${jre}" \
+      --set JAVA  "${jre}/bin/java"
+
+    chmod +x $out/bin/cytoscape
+  '';
+
+  meta = {
+    homepage = "http://www.cytoscape.org";
+    description = "A general platform for complex network analysis and visualization";
+    license = stdenv.lib.licenses.lgpl21;
+    maintainers = [stdenv.lib.maintainers.mimadrid];
+  };
+}

pkgs/top-level/all-packages.nix

@@ -16386,6 +16386,8 @@ in
     inherit (pkgs.gnome) gtkglext;
   };
 
+  cytoscape = callPackage ../applications/science/misc/cytoscape { };
+
   fityk = callPackage ../applications/science/misc/fityk { };
 
   gravit = callPackage ../applications/science/astronomy/gravit { };