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mosdepth: init 0.2.3

This commit is contained in:
Justin Bedo 2018-07-06 13:58:00 +10:00
parent 151680b077
commit 59141de608
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GPG Key ID: 2C18202C56C182BD
2 changed files with 44 additions and 0 deletions
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42
pkgs/applications/science/biology/mosdepth/default.nix Normal file
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@ -0,0 +1,42 @@
{stdenv, fetchFromGitHub, nim, htslib, patchelf, pcre}:
let
hts-nim = fetchFromGitHub {
owner = "brentp";
repo = "hts-nim";
rev = "9cd83e30522ab64cd71eb8209be4154aa5579ce1";
sha256 = "10g408idy14667varq1syf06rrbpk63i3ib7i5dh1md4ib19av6f";
};
docopt = fetchFromGitHub {
owner = "docopt";
repo = "docopt.nim";
rev = "v0.6.5";
sha256 = "0yx79m4jkdcazwlky55nwf39zj5kdhymrrdrjq29mahiwx83x5zr";
};
in stdenv.mkDerivation rec {
name = "mosdepth-${version}";
version = "0.2.3";
src = fetchFromGitHub {
owner = "brentp";
repo = "mosdepth";
rev = "v${version}";
sha256 = "1b9frrwhcvay3alhn0d02jccc2qlbij1732hzq9nhwnr4kvsvxx7";
};
buildInputs = [ nim ];
buildPhase = "nim -p:${hts-nim}/src -p:${docopt}/src c -d:release mosdepth.nim";
installPhase = "install -Dt $out/bin mosdepth";
fixupPhase = "patchelf --set-rpath ${stdenv.lib.makeLibraryPath [ stdenv.cc.cc htslib pcre ]} $out/bin/mosdepth";
meta = with stdenv.lib; {
description = "fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing.";
license = licenses.mit;
homepage = https://github.com/brentp/mosdepth;
maintainers = with maintainers; [ jbedo ];
platforms = platforms.linux;
};
}

2
pkgs/top-level/all-packages.nix
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@ -20255,6 +20255,8 @@ with pkgs;
minimap2 = callPackage ../applications/science/biology/minimap2 { };
mosdepth = callPackage ../applications/science/biology/mosdepth { };
ncbi_tools = callPackage ../applications/science/biology/ncbi-tools { };
paml = callPackage ../applications/science/biology/paml { };