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r-modules: fix evaluation errors

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This commit is contained in:
Peter Simons 2015-03-21 21:59:31 +01:00
parent 701251e435
commit 5238bfb73f
1 changed files with 1 additions and 10 deletions
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11
pkgs/development/r-modules/default.nix
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@ -242,7 +242,6 @@ let
ncdf4 = [ pkgs.netcdf ]; ncdf4 = [ pkgs.netcdf ];
ncdf = [ pkgs.netcdf ]; ncdf = [ pkgs.netcdf ];
nloptr = [ pkgs.nlopt ]; nloptr = [ pkgs.nlopt ];
npRmpi = [ pkgs.openmpi ];
openssl = [ pkgs.openssl ]; openssl = [ pkgs.openssl ];
outbreaker = [ pkgs.gsl ]; outbreaker = [ pkgs.gsl ];
pbdMPI = [ pkgs.openmpi ]; pbdMPI = [ pkgs.openmpi ];
@ -607,7 +606,6 @@ let
"ripa" "ripa"
"rite" "rite"
"rnbn" "rnbn"
"rriskDistributions"
"rsgcc" "rsgcc"
"sdcMicroGUI" "sdcMicroGUI"
"sharpshootR" "sharpshootR"
@ -642,7 +640,6 @@ let
packagesToSkipCheck = [ packagesToSkipCheck = [
"Rmpi" # tries to run MPI processes "Rmpi" # tries to run MPI processes
"gmatrix" # requires CUDA runtime "gmatrix" # requires CUDA runtime
"npRmpi" # tries to run MPI processes
"sprint" # tries to run MPI processes "sprint" # tries to run MPI processes
"pbdMPI" # tries to run MPI processes "pbdMPI" # tries to run MPI processes
]; ];
@ -687,7 +684,6 @@ let
"compendiumdb" # requires Biobase "compendiumdb" # requires Biobase
"CORM" # requires limma "CORM" # requires limma
"cplexAPI" # requires CPLEX "cplexAPI" # requires CPLEX
"cqrReg" # requires Rmosek
"crmn" # requires pcaMethods, and Biobase "crmn" # requires pcaMethods, and Biobase
"CrypticIBDcheck" # requires rJPSGCS "CrypticIBDcheck" # requires rJPSGCS
"cudaBayesreg" # requres Rmath "cudaBayesreg" # requres Rmath
@ -702,6 +698,7 @@ let
"dcGOR" # requires dnet "dcGOR" # requires dnet
"demi" # requires affy, affxparser, and oligo "demi" # requires affy, affxparser, and oligo
"DepthProc" # requires samr "DepthProc" # requires samr
"DiagrammeR" # requires V8 to build
"Digiroo2" # requires spatstat "Digiroo2" # requires spatstat
"dixon" # requires spatstat "dixon" # requires spatstat
"dnet" # requires supraHex, graph, Rgraphviz, and Biobase "dnet" # requires supraHex, graph, Rgraphviz, and Biobase
@ -983,12 +980,6 @@ let
]; ];
}); });
npRmpi = old.npRmpi.overrideDerivation (attrs: {
configureFlags = [
"--with-Rmpi-type=OPENMPI"
];
});
Rmpfr = old.Rmpfr.overrideDerivation (attrs: { Rmpfr = old.Rmpfr.overrideDerivation (attrs: {
configureFlags = [ configureFlags = [
"--with-mpfr-include=${pkgs.mpfr}/include" "--with-mpfr-include=${pkgs.mpfr}/include"