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pythonPackages.pysam: Disable failing tests unrelated to packaging 

These will be fixed upstream and are due to format changes introduced
in samtools and htslib 1.11
This commit is contained in:
Renato Alves 2020-10-29 16:20:23 +01:00
parent 6e19ed0a52
commit 459c5ec3b1
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GPG Key ID: C5D065FC72082AE9
1 changed files with 9 additions and 3 deletions
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12
pkgs/development/python-modules/pysam/default.nix
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@ -80,13 +80,19 @@ buildPythonPackage rec {
--deselect tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_header_content_is_as_expected \
--deselect tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_access_works \
--deselect tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_header_content_is_as_expected \
--deselect tests/AlignmentFile_test.py::TestIO::testBAM2SAM \
--deselect tests/AlignmentFile_test.py::TestIO::testSAM2BAM \
--deselect tests/AlignmentFile_test.py::TestIO::testWriteUncompressedBAMFile \
--deselect tests/AlignmentFile_test.py::TestDeNovoConstruction::testBAMWholeFile \
--deselect tests/AlignmentFile_test.py::TestEmptyHeader::testEmptyHeader \
--deselect tests/AlignmentFile_test.py::TestHeaderWithProgramOptions::testHeader \
--deselect tests/AlignmentFile_test.py::TestIO::testBAM2BAM \
--deselect tests/AlignmentFile_test.py::TestIO::testBAM2CRAM \
--deselect tests/AlignmentFile_test.py::TestIO::testBAM2SAM \
--deselect tests/AlignmentFile_test.py::TestIO::testFetchFromClosedFileObject \
--deselect tests/AlignmentFile_test.py::TestIO::testOpenFromFilename \
--deselect tests/AlignmentFile_test.py::TestIO::testSAM2BAM \
--deselect tests/AlignmentFile_test.py::TestIO::testWriteUncompressedBAMFile \
--deselect tests/AlignmentFile_test.py::TestIteratorRowAllBAM::testIterate \
--deselect tests/StreamFiledescriptors_test.py::StreamTest::test_text_processing \
--deselect tests/compile_test.py::BAMTest::testCount \
tests/
'';