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Updated NCBI tools to latest version

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svn path=/nixpkgs/trunk/; revision=14087
This commit is contained in:
Pjotr Prins 2009-02-16 16:38:55 +00:00
parent 1b849c8282
commit 387a7a85d6
1 changed files with 8 additions and 6 deletions
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14
pkgs/applications/science/biology/ncbi-tools/default.nix
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@ -1,21 +1,23 @@
{stdenv, fetchurl, cpio}: {stdenv, fetchurl, cpio}:
# Note: may need the C-libs at ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/Mar_17_2008/NCBI_C_Toolkit/ncbi_c--Mar_17_2008.tar.gz (or split out?) # Note: you may want the older C-libs at ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/Mar_17_2008/NCBI_C_Toolkit/ncbi_c--Mar_17_2008.tar.gz
stdenv.mkDerivation rec { stdenv.mkDerivation rec {
name = "ncbi_cxx"; name = "ncbi_tools";
ncbi_version = "Mar_17_2008"; ncbi_version="Dec_31_2008";
src = fetchurl { src = fetchurl {
url = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/${ncbi_version}/ncbi_cxx--${ncbi_version}.tar.gz"; url = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/${ncbi_version}/ncbi_cxx--${ncbi_version}.tar.gz";
sha256 = "0mxbmz6gndallz8l5jdslq6illa3hgf31xi2yb984mqm9in485as"; sha256 = "1b2v0dcdqn3bysgdkj57sxmd6s0hc9wpnxssviz399g6plhxggbr";
}; };
configureFlags = "--without-debug --with-bin-release --with-dll --without-static"; configureFlags = "--without-debug --with-bin-release --with-dll --without-static";
# PIC flag (position independent code for shared libraries)
NIX_CXXFLAGS_COMPILE = if stdenv.system == "x86_64-linux" then "-fPIC" else "";
buildInputs = [cpio]; buildInputs = [cpio];
meta = { meta = {
description = ''NCBI Bioinformatics toolbox (incl. blast)''; description = ''NCBI Bioinformatics toolbox (incl. BLAST)'';
longDescription = ''The NCBI Bioinformatics toolsbox, including command-line utilties, libraries and include files. No X11 support (at this point).''; longDescription = ''The NCBI Bioinformatics toolsbox, including command-line utilties, libraries and include files. No X11 support'';
homepage = http://www.ncbi.nlm.nih.gov/IEB/ToolBox/; homepage = http://www.ncbi.nlm.nih.gov/IEB/ToolBox/;
license = "GPL"; license = "GPL";
priority = "5"; # zlib.so gives a conflict with zlib priority = "5"; # zlib.so gives a conflict with zlib