diff --git a/pkgs/applications/science/biology/ncbi-tools/default.nix b/pkgs/applications/science/biology/ncbi-tools/default.nix index 45460c4b1aa..e47b1744da7 100644 --- a/pkgs/applications/science/biology/ncbi-tools/default.nix +++ b/pkgs/applications/science/biology/ncbi-tools/default.nix @@ -1,21 +1,23 @@ {stdenv, fetchurl, cpio}: -# Note: may need the C-libs at ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/Mar_17_2008/NCBI_C_Toolkit/ncbi_c--Mar_17_2008.tar.gz (or split out?) +# Note: you may want the older C-libs at ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/Mar_17_2008/NCBI_C_Toolkit/ncbi_c--Mar_17_2008.tar.gz stdenv.mkDerivation rec { - name = "ncbi_cxx"; - ncbi_version = "Mar_17_2008"; + name = "ncbi_tools"; + ncbi_version="Dec_31_2008"; src = fetchurl { url = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/${ncbi_version}/ncbi_cxx--${ncbi_version}.tar.gz"; - sha256 = "0mxbmz6gndallz8l5jdslq6illa3hgf31xi2yb984mqm9in485as"; + sha256 = "1b2v0dcdqn3bysgdkj57sxmd6s0hc9wpnxssviz399g6plhxggbr"; }; configureFlags = "--without-debug --with-bin-release --with-dll --without-static"; + # PIC flag (position independent code for shared libraries) + NIX_CXXFLAGS_COMPILE = if stdenv.system == "x86_64-linux" then "-fPIC" else ""; buildInputs = [cpio]; meta = { - description = ''NCBI Bioinformatics toolbox (incl. blast)''; - longDescription = ''The NCBI Bioinformatics toolsbox, including command-line utilties, libraries and include files. No X11 support (at this point).''; + description = ''NCBI Bioinformatics toolbox (incl. BLAST)''; + longDescription = ''The NCBI Bioinformatics toolsbox, including command-line utilties, libraries and include files. No X11 support''; homepage = http://www.ncbi.nlm.nih.gov/IEB/ToolBox/; license = "GPL"; priority = "5"; # zlib.so gives a conflict with zlib