Commit Graph

494 Commits

Author SHA1 Message Date
Anders Kaseorg 1a32e383e6 or-tools: 7.3 -> 7.5
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
2020-02-10 20:40:12 +01:00
R. RyanTM 5659946d6a m4ri: 20200115 -> 20200125 2020-02-08 16:16:48 +00:00
Drew Risinger c13bf84d45 libraries.science.math.scs: 2.0.2 -> 2.1.1 2020-01-31 16:05:05 -05:00
Frederik Rietdijk dce0ca29d9 Merge master into staging-next 2020-01-28 10:46:13 +01:00
Timo Kaufmann e39e304638
Merge pull request #78496 from r-ryantm/auto-update/brial
brial: 1.2.6 -> 1.2.7
2020-01-26 23:28:02 +01:00
R. RyanTM 2d172e6403 brial: 1.2.6 -> 1.2.7 2020-01-26 02:39:07 +00:00
Timo Kaufmann d62e410ccd
Merge pull request #78222 from r-ryantm/auto-update/m4ri
m4ri: 20140914 -> 20200115
2020-01-22 17:43:44 +01:00
R. RyanTM 813678058f m4ri: 20140914 -> 20200115 2020-01-21 23:46:57 +00:00
R. RyanTM 3937313195 m4rie: 20150908 -> 20200115 2020-01-21 23:24:43 +00:00
Anders Kaseorg 3cd8ce3bce treewide: Fix unsafe concatenation of $LD_LIBRARY_PATH
Naive concatenation of $LD_LIBRARY_PATH can result in an empty
colon-delimited segment; this tells glibc to load libraries from the
current directory, which is definitely wrong, and may be a security
vulnerability if the current directory is untrusted.  (See #67234, for
example.)  Fix this throughout the tree.

Signed-off-by: Anders Kaseorg <andersk@mit.edu>
2020-01-15 09:47:03 +01:00
Mario Rodas 5ab4676d88
Merge pull request #77194 from r-ryantm/auto-update/primesieve
primesieve: 7.4 -> 7.5
2020-01-09 05:02:21 -05:00
R. RyanTM e28fe589d9 primesieve: 7.4 -> 7.5 2020-01-07 00:22:48 -08:00
Mario Rodas e11aab8340
Merge pull request #76356 from r-ryantm/auto-update/openlibm
openlibm: 0.6.0 -> 0.7.0
2020-01-06 09:58:54 -05:00
Frederik Rietdijk 17ab5f9d88 Merge master into staging-next 2020-01-06 10:38:20 +01:00
Ryan Mulligan f8cd096aad
Merge pull request #54967 from volhovm/volhovm/clmagma
clmagma: init at 1.3
2020-01-05 08:18:12 -08:00
Frederik Rietdijk 828f93a326 Merge master into staging-next 2020-01-05 16:00:21 +01:00
markuskowa 1c55261574
Merge pull request #75526 from robertodr/more-mkl
Add GNU threading and Fortran libraries to MKL package
2020-01-04 20:36:43 +01:00
Frederik Rietdijk 867552957f openblas: fix static musl build 2020-01-03 12:50:47 +01:00
Frederik Rietdijk 960c24a996
Merge pull request #75798 from tobim/pkgsStatic/arrow
arrow-cpp: add pkgsStatic support
2020-01-03 10:13:31 +01:00
Tobias Mayer db5d3cdfe2 openblas: partially fix static build 2019-12-31 15:05:13 +01:00
Robin Gloster 5f2b92e3ec
treewide: NIX_*_COMPILE -> string 2019-12-31 00:13:29 +01:00
Merijn Broeren 133103d709
treewide: replace make/build/configure/patchFlags with nix lists 2019-12-30 12:58:11 +01:00
R. RyanTM a2a56df6f8 openlibm: 0.6.0 -> 0.7.0 2019-12-23 20:42:29 -08:00
Roberto Di Remigio 153597a320
mkl: filter static libs in installPhase 2019-12-19 10:23:26 +01:00
Roberto Di Remigio 6cc9bbe2fd
mkl: extract static libraries optionally 2019-12-19 10:12:00 +01:00
Roberto Di Remigio e0605b3174
mkl: add GNU threading and Fortran libraries
Signed-off-by: Roberto Di Remigio <roberto.diremigio@gmail.com>
2019-12-19 10:12:00 +01:00
Timo Kaufmann 135081a538 brial: 1.2.5 -> 1.2.6
Motivation is mostly https://github.com/BRiAl/BRiAl/pull/37, which is a
pre-requiste for getting the sage tests to pass with python3.
2019-12-13 20:31:31 +01:00
Mateusz Kowalczyk 1451a52a38 Remove myself (fuuzetsu) from maintainer lists
I haven't been doing any maintenance for a long time now and not only
do I get notified, it also creates a fake impression that all these
packages had at least one maintainer when in practice they had none.
2019-12-05 16:29:48 +09:00
Dmitry Kalinkin aa7efea848
Merge pull request #73958 from markuskowa/upd-lapack
liblapack: 3.8.0 -> 3.9.0
2019-11-24 20:06:04 -05:00
John Ericson d0d5136cce Merge remote-tracking branch 'upstream/master' into wrapper-pname-support 2019-11-24 17:25:07 +00:00
John Ericson 9b090ccbca treewide: Get rid of most `parseDrvName` without breaking compat
That is because this commit should be merged to both master and
release-19.09.
2019-11-24 17:22:28 +00:00
Markus Kowalewski 7e44c6dee6
liblapack: 3.8.0 -> 3.9.0 2019-11-24 11:47:50 +01:00
Markus Kowalewski 8419bb2a20
scalapack: 2.0.2 -> 2.1 2019-11-20 22:44:33 +01:00
Markus Kowalewski d817a49faa
mkl: add scalapack libraries to output 2019-11-18 09:05:03 +01:00
Andreas Rammhold 1e72fa5158
Merge pull request #68954 from dguibert/dg/cudatoolkit_10_1
cudatoolkit: add 10.1.243
2019-11-06 08:58:30 +01:00
Benjamin Hipple fa1e275f31 mkl: 2019.3 -> 2019.5 (#71476)
Includes bugfixes, new features, and performance improvements.

Full release notes here:
https://software.intel.com/en-us/articles/intel-math-kernel-library-release-notes-and-new-features

Leave Darwin on 2019.3 pending resolution of DMG issues
2019-10-27 15:34:16 -04:00
Sam Stites f12199614d magma: use cudatoolkit 2019-10-23 10:57:43 -07:00
markuskowa f6d7f8ae16
Merge pull request #68927 from danieldk/mkl
mkl: include pkgconfig files
2019-10-13 19:16:49 +02:00
Orivej Desh 2455b2e309 or-tools: 7.0 -> 7.3 2019-10-04 05:17:48 +00:00
Nikolay Amiantov 1c429acbff tensorflow: add OpenGL path to find libcudart 2019-10-02 10:33:31 +03:00
Timo Kaufmann 7a7e9c1b27
Merge pull request #64193 from timokau/sage-8.9
sage: 8.8 -> 8.9
2019-09-30 11:13:46 +00:00
Joachim Fasting bad07dfac5
tree-wide: replace uses of splitString "." with lib.versions
Quoting from the splitString docstring:

   NOTE: this function is not performant and should never be used.

This replaces trivial uses of splitString for splitting version
strings with the (potentially builtin) splitVersion.
2019-09-26 17:42:49 +02:00
Timo Kaufmann 1797c9c295 sage: 8.9.beta9 -> 8.9.rc0
Sage now by default expects the lcalc library to be named Lfunction
(instead of libLfunction). This could be changed by an environment
variable (https://trac.sagemath.org/ticket/28224), but various distros
seem to agree on this standard
(https://groups.google.com/forum/#!topic/sage-packaging/xvh55IxHTZg) so
it's best just to follow it. The old standard was set by sage anyway and
sage is the only consumer of lcalc in nixpkgs.
2019-09-24 17:51:09 +02:00
Daniël de Kok 9f25e95576 mkl: include pkgconfig files 2019-09-22 20:07:34 +02:00
David Guibert 92690a8937 cuddn: add 10.1 (version 7.6.3) 2019-09-17 15:19:41 +02:00
Markus Kowalewski ecd20d2166
liblapack: remove optimized blas flag.
This cmake flag has no effect since no external blas
library is provided in the build inputs.
2019-09-15 11:39:58 +02:00
Markus Kowalewski fc7374176f
liblapack: build LAPACKE C api 2019-09-15 11:39:58 +02:00
Vladimír Čunát 991c0e1618
treewide: mark packages as buildable on darwin (PR #45364)
vcunat amended the commit a bit; see the PR for details/discussion.
2019-09-15 10:50:08 +02:00
volth 7b8fb5c06c treewide: remove redundant quotes 2019-09-08 23:38:31 +00:00
Frederik Rietdijk 66bc7fc1b3 Merge master into staging-next 2019-09-06 22:46:05 +02:00
tbenst 6d7282d74a magma: 2.0.2 -> 2.5.0 2019-09-06 20:15:10 +02:00
Vladimír Čunát 4aad2947f8
Merge branch 'master' into staging-next 2019-09-04 11:00:56 +02:00
idontgetoutmuch 739cdb368e Ensure blas produces pkg config files (#67629)
blas: produce pkgconfig file
2019-09-03 16:34:45 +02:00
Mikhail Volkhov 58dffa3459
clmagma: init at 1.3 2019-08-30 22:40:04 +02:00
volth 08f68313a4 treewide: remove redundant rec 2019-08-28 11:07:32 +00:00
Frederik Rietdijk 5061fe0c2c Merge staging-next into staging 2019-08-28 08:26:42 +02:00
volth 35d68ef143 treewide: remove redundant quotes 2019-08-26 21:40:19 +00:00
Vladimír Čunát 2e6bf42a22
Merge branch 'master' into staging-next
There ver very many conflicts, basically all due to
name -> pname+version.  Fortunately, almost everything was auto-resolved
by kdiff3, and for now I just fixed up a couple evaluation problems,
as verified by the tarball job.  There might be some fallback to these
conflicts, but I believe it should be minimal.

Hydra nixpkgs: ?compare=1538299
2019-08-24 08:55:37 +02:00
R. RyanTM 0ff0c288a8 sympow: 2.023.4 -> 2.023.5
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/sympow/versions
2019-08-20 21:06:37 -07:00
Markus Kowalewski 6ff8958bef openblas: 0.3.6 -> 0.3.7 2019-08-18 11:49:24 +02:00
volth c814d72b51 treewide: name -> pname 2019-08-17 10:54:38 +00:00
Frederik Rietdijk fe9a3e3e63 Merge staging-next into staging 2019-08-17 09:39:23 +02:00
volth 46420bbaa3 treewide: name -> pname (easy cases) (#66585)
treewide replacement of

stdenv.mkDerivation rec {
  name = "*-${version}";
  version = "*";

to pname
2019-08-15 13:41:18 +01:00
Gabriel Ebner a736d87393 spooles: init at 2.2 2019-08-14 19:09:39 +02:00
Timo Kaufmann 5e58c5f900 sympow: 1.018.1 -> 2.023.4
Maintenance taken over by debian package maintainer jgmbenoit:
https://trac.sagemath.org/ticket/3360#comment:17

This moves sympow to his fork, since there is no offical
version-controlled source repository from the original author and they
do not seem to maintain sympow anymore. We had already accumulated quite
some patches from debian, who have effectively maintained sympow for a
while now.
2019-08-09 17:45:08 +02:00
Nikolay Amiantov 0a1bf4734f libtensorflow: add binary build and add automatic generation 2019-07-31 13:28:44 +03:00
Orivej Desh b5d1d50aa9 google-gflags: move to aliases.nix
google-gflags were renamed to gflags in 2012:
https://github.com/gflags/gflags/#25-january-2012

gflags.name will be updated in staging.
2019-07-25 09:18:32 +00:00
Orivej Desh 5d86f9a9ce nccl: 2.4.2-1 -> 2.4.8-1 2019-07-18 17:04:43 +00:00
Ryan Mulligan 508ae42a0f treewide: fix redirect URLs 2019-07-10 12:52:51 -07:00
Nikolay Amiantov 08b1d81089 osi: init at 0.108.4 2019-06-24 15:59:57 +03:00
R. RyanTM 069f2235af brial: 1.2.4 -> 1.2.5
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/brial/versions
2019-06-17 13:23:05 +02:00
volth f3282c8d1e treewide: remove unused variables (#63177)
* treewide: remove unused variables

* making ofborg happy
2019-06-16 19:59:05 +00:00
Dmitry Kalinkin cbaa9a7ab9
Merge pull request #57947 from smaret/fix-mkl
mkl: fix install_name on Darwin
2019-06-06 18:27:30 -04:00
Sébastien Maret fb883a58df
mkl: fix install_name on Darwin
Closes #57697

Co-Authored-By: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
2019-06-04 22:08:48 +02:00
Niklas Hambüchen 8d5864eb47 openblas: Add enableStatic flag 2019-05-28 08:57:23 +02:00
Niklas Hambüchen 43fda1c96d openblas: 0.3.5 -> 0.3.6 2019-05-28 08:57:23 +02:00
Silvan Mosberger 16c66f66ae
scalapack: Increase individual test timeout to prevent hydra failures 2019-05-27 20:08:32 +02:00
Florian Klink 2ed6903da5
libglvnd, ocl-icd, vulkan-loader: Add /run/opengl-driver(-32) to RUNPATH. (#60985)
libglvnd, ocl-icd, vulkan-loader: Add /run/opengl-driver(-32) to RUNPATH.
2019-05-22 23:36:01 +02:00
Ambroz Bizjak 28a0918916 Add driver library path to some packages to find CUDA libraries.
This is to avoid relying on LD_LIBRARY_PATH for finding the CUDA driver libraries.
2019-05-22 18:34:09 +02:00
Frederik Rietdijk f137783927 Merge master into staging-next 2019-05-01 11:45:46 +02:00
R. RyanTM 16e1d009e0 ipopt: 3.12.12 -> 3.12.13
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ipopt/versions
2019-05-01 11:11:28 +02:00
Markus Kowalewski 6968c4f305 openblas: turn off AVX512 optimizations
The AVX512 optimization has a bug in openblas-0.3.5
and can also lead to slower code on Xeon Silver CPUs.

See https://github.com/xianyi/OpenBLAS/issues/1955
and https://github.com/xianyi/OpenBLAS/issues/2029
2019-04-27 07:07:49 +02:00
Matthew Bauer 87944c3125
Merge pull request #56744 from matthewbauer/macos-10-12
Update macOS to 10.12
2019-04-26 22:20:03 -04:00
Matthew Bauer 63831c398a python-fenics: put pytest in nativeBuildInputs 2019-04-26 21:55:10 -04:00
Renaud 6186a6f012
Merge pull request #58484 from sveitser/cudnn-v7.4.2
cudnn_cudatoolkit_10: 7.3.1 -> 7.4.2
2019-04-24 22:40:17 +02:00
Daniel Schaefer bac4d95aa2 treewide: Change URLs to HTTPS
Lots of URLs were HTTP redirect to HTTPS. Changed those and checked them
if there's actual content. Inspired by
https://github.com/NixOS/nixpkgs/issues/60004
2019-04-22 10:19:54 +02:00
Mateusz Kowalczyk 575d6a4826
Merge pull request #58417 from andersk/ortools-7.0
or-tools: 6.10 -> 7.0, add Python bindings
2019-04-20 17:39:23 +09:00
Matthew Bauer 290a5d916e treewide: update homepages to https where available
Based on "problems" from repology:

https://repology.org/repository/nix_unstable/problems

Mostly simple changes to reflect redirects.
2019-04-15 10:10:05 -04:00
Vladimír Čunát e1f55599cc
Merge #58589: openblas: fix aarch64 build 2019-04-07 16:58:42 +02:00
Markus Kowalewski 70867a92f6
arpack: fix tests on darwin 2019-04-03 10:48:52 +02:00
Markus Kowalewski 9a60a65249
arpack: 3.6.3 -> 3.7.0
* switch to FetchFromGitHub
* switch from autotools to cmake
* add eigen to input (is now required)
2019-04-03 10:48:52 +02:00
Markus Kowalewski 734c6c21cb
mkl: 2019.0.117 -> 2019.3.199 2019-04-01 21:50:23 +02:00
Markus Kowalewski fa28a838f3
openblas: fix aarch64 build 2019-03-31 12:19:41 +02:00
Markus Kowalewski 4c74ee948e
clblas: turn of gtest, fix build
clblas does not work anymore with gmock 1.8.1.
Turning off the test suite fixes the build.
2019-03-29 13:59:45 +01:00
sveitser e29e315c5f
cudnn_cudatoolkit_10: 7.3.1 -> 7.4.2 2019-03-28 21:49:13 +08:00
Anders Kaseorg ae6b9dcb0e or-tools: 6.10 -> 7.0
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
2019-03-26 17:04:03 -07:00
Anders Kaseorg 08e9273e29 or-tools: Add Python bindings
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
2019-03-26 17:04:03 -07:00
R. RyanTM e14d70d955 primesieve: 7.3 -> 7.4 (#57375)
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/primesieve/versions
2019-03-12 22:43:56 +01:00
R. RyanTM cac06fc53d ipopt: 3.12.11 -> 3.12.12
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ipopt/versions
2019-03-03 20:47:42 +01:00
Averell Dalton d7806fe4ed openblas: adjust makeFlags handling 2019-02-23 09:13:57 +01:00