218293 Commits

Author SHA1 Message Date
Aaron Andersen
f5951f520c nixos/ssh: silence ssh-keygen during configuration validation 2020-03-14 19:37:30 -04:00
R. RyanTM
41742c85ec clash: 0.17.1 -> 0.18.0 2020-03-14 23:34:23 +00:00
Michiel Leenaars
2410dbb3c7 Unbound: 1.9.5 -> 1.10.0 2020-03-14 23:32:04 +00:00
R. RyanTM
c6dd8929d6 eksctl: 0.13.0 -> 0.15.0 2020-03-14 23:30:49 +00:00
Andrei Lapshin
626d6b5d08 androidStudioPackages.beta: 4.0.0.10 -> 4.0.0.11 2020-03-14 16:27:00 -07:00
R. RyanTM
6f3e387b0c archiver: 3.2.0 -> 3.3.0 2020-03-14 16:04:58 -07:00
Timo Kaufmann
6c0fa331f0 python.pkgs.smmap2: remove
They were recently merged back together and smmap is the canonical
version:

https://github.com/gitpython-developers/smmap/issues/44
2020-03-14 16:00:38 -07:00
Timo Kaufmann
8eacb87061 python.pkgs.GitPython: 3.0.5 -> 3.1.0 2020-03-14 16:00:38 -07:00
Timo Kaufmann
6db65f8d02 python.pkgs.gitdb2: remove
The two are now the same:
https://github.com/gitpython-developers/gitdb/issues/59
2020-03-14 16:00:38 -07:00
Timo Kaufmann
e789990fb6 python.pkgs.gitdb: 0.6.4 -> 4.0.2 2020-03-14 16:00:38 -07:00
Florian Klink
74f451b851
Merge pull request #82413 from aanderse/authorized-keys-command
nixos/sshd: add authorizedKeysCommand and authorizedKeysCommandUser options
2020-03-14 23:58:47 +01:00
Dmitry Kalinkin
68db99ad97 snakemake: 5.9.1 -> 5.10.0 2020-03-14 15:58:24 -07:00
adisbladis
86a3326a37
Merge pull request #82348 from etu/php-exts-as-packages
PHP extensions as packages
2020-03-14 22:52:12 +00:00
R. RyanTM
8e868a44d5 fio: 3.18 -> 3.19 2020-03-14 15:50:22 -07:00
Fabian Möller
1e5a151ac5 cargo-udeps: 0.1.9 -> 0.1.10 2020-03-14 15:48:46 -07:00
Daniël de Kok
7b3802dfd1 sentencepiece: add myself as a maintainer 2020-03-14 15:40:29 -07:00
Daniël de Kok
27d0c5a07e sentencepiece: split into multiple outputs, optional gperftools
I am using sentencepiece in a downstream application where I want to
minimize the resulting closures. This commit makes changes to make
sentencepiece a leaner dependency:

- Split the outputs, so that the binaries/headers do not end up in the
  transitive closure in a library dependency.

- Add the `withGPerfTools` option, which is enabled by default, to
  make it possible to disable the gperftools dependency. According to
  the sentencepiece README, this dependency gives a 10-40% performance
  improvement. But in many cases this is overshadowed by the neural
  networks that use piece identifiers as input anyway.
2020-03-14 15:40:29 -07:00
Jaakko Luttinen
24219f69a3 pythonPackages.sphinxcontrib-katex: init at 0.5.1 2020-03-14 15:37:47 -07:00
Jaakko Luttinen
d7ef824b7b pythonPackages.sphinxcontrib-fulltoc: init at 1.2.0 2020-03-14 15:37:20 -07:00
Benedict Aas
51fa3d374a obinskit: init at 1.1.1
This is the configuration software for the enthusiast Anne Pro mechanical
keyboard, used to update the firmware, change keyboard settings, clear
Bluetooth connections from the device, set up backlighting colours, and so
forth.
2020-03-14 15:29:56 -07:00
Daniël de Kok
e539eb93f8 python3Packages.somajo: init at 2.0.4 2020-03-14 22:58:02 +01:00
Ben Darwin
61b61ed087 python3Packages.batchgenerators: init at 0.19.7 2020-03-14 22:56:38 +01:00
Ben Darwin
45d0109512 python3Packages.threadpoolctl: init at 2.0.0 2020-03-14 22:56:38 +01:00
Frederik Rietdijk
3a2c21dc95
Merge pull request #82361 from petabyteboy/feature/jbr-from-source
jetbrains.jdk: build from source
2020-03-14 22:54:57 +01:00
Francesco Gazzetta
f9e13566cc ft2-clone: init at 1.09 2020-03-14 22:54:06 +01:00
Francesco Gazzetta
510419ff5d pt2-clone: init at 1.06 2020-03-14 22:53:41 +01:00
Evan Stoll
2643e4163b gitkraken: 6.5.3 -> 6.5.4 2020-03-14 22:49:06 +01:00
Daniël de Kok
80d85b68a3 python3Packages.spacy: 2.2.3 -> 2.2.4
Changelog:

https://github.com/explosion/spaCy/releases/tag/v2.2.4

Also remove some unused propagatedBuildInputs.
2020-03-14 22:48:02 +01:00
Daniël de Kok
8dc3bb0af8 python3Packages.thinc: 7.3.1 -> 7.4.0
Remove old stale propagatedBuildInputs.
2020-03-14 22:48:02 +01:00
Daniël de Kok
b58cd1b2e9 python3Packages.srsly: 1.0.1 -> 1.0.2 2020-03-14 22:48:02 +01:00
Félix Baylac-Jacqué
380ce1fc4f ssb-patchwork: 3.17.5 -> 3.17.6 2020-03-14 22:47:24 +01:00
adisbladis
2ed1477d86
Merge pull request #82453 from adisbladis/nix-pythonprefix
Python: introduce NIX_PYTHONPREFIX in order to set site.PREFIXES
2020-03-14 21:42:01 +00:00
Frederik Rietdijk
7447fff95a
Fix sys.prefix in case of a Nix env
The prefix will now be correct in case of Nix env.

Note, however, that creating a venv from a Nix env still does not function. This does not seem to be possible
with the current approach either, because venv will copy or symlink our Python wrapper. In case it symlinks
(the default) it won't see a pyvenv.cfg. If it is copied I think it should function but it does not...
2020-03-14 21:39:32 +00:00
adisbladis
753122388d
Python: Add integration test verifying NIX_PYTHONPATH with Mypy 2020-03-14 21:39:32 +00:00
adisbladis
05571d3059
Python Add test for NIX_PYTHONPREFIX 2020-03-14 21:39:31 +00:00
adisbladis
d88a7735d2
Python: introduce NIX_PYTHONPREFIX in order to set site.PREFIXES
This is needed in case of `python.buildEnv` to make sure site.PREFIXES
does not only point to the unwrapped executable prefix.

--------------------------------------------------------------------------------

This PR is a story where your valiant hero sets out on a very simple adventure but ends up having to slay dragons, starts questioning his own sanity and finally manages to gain enough knowledge to slay the evil dragon and finally win the proverbial price.

It all started out on sunny spring day with trying to tackle the Nixops plugin infrastructure and make that nice enough to work with.

Our story begins in the shanty town of [NixOps-AWS](https://github.com/nixos/nixops-aws) where [mypy](http://mypy-lang.org/) type checking has not yet been seen.

As our deuteragonist (@grahamc) has made great strides in the capital city of [NixOps](https://github.com/nixos/nixops) our hero wanted to bring this out into the land and let the people rejoice in reliability and a wonderful development experience.

The plugin work itself was straight forward and our hero quickly slayed the first small dragon, at this point things felt good and our hero thought he was going to reach the town of NixOps-AWS very quickly.

But alas! Mypy did not want to go, it said:
`Cannot find implementation or library stub for module named 'nixops'`

Our hero felt a small sliver of life escape from his body. Things were not going to be so easy.

After some frustration our hero discovered there was a [rule of the land of Python](https://www.python.org/dev/peps/pep-0561/) that governed the import of types into the kingdom, more specificaly a very special document (file) called `py.typed`.
Things were looking good.

But no, what the law said did not seem to match reality. How could things be so?

After some frustrating debugging our valiant hero thought to himself "Hmm, I wonder if this is simply a Nix idiosyncrasy", and it turns out indeed it was.
Things that were working in the blessed way of the land of Python (inside a `virtualenv`) were not working the way they were from his home town of Nix (`nix-shell` + `python.withPackages`).

After even more frustrating attempts at reading the mypy documentation and trying to understand how things were supposed to work our hero started questioning his sanity.
This is where things started to get truly interesting.

Our hero started to use a number of powerful weapons, both forged in the land of Python (pdb) & by the mages of UNIX (printf-style-debugging & strace).

After first trying to slay the dragon simply by `strace` and a keen eye our hero did not spot any weak points.
Time to break out a more powerful sword (`pdb`) which also did not divulge any secrets about what was wrong.

Our hero went back to the `strace` output and after a fair bit of thought and analysis a pattern started to emerge. Mypy was looking in the wrong place (i.e. not in in the environment created by `python.withPackages` but in the interpreter store path) and our princess was in another castle!

Our hero went to the pub full of old grumpy men giving out the inner workings of the open source universe (Github) and acquired a copy of Mypy.
He littered the code with print statements & break points.
After a fierce battle full of blood, sweat & tears he ended up in 20f7f2dd71/mypy/sitepkgs.py and realised that everything came down to the Python `site` module and more specifically https://docs.python.org/3.7/library/site.html#site.getsitepackages which in turn relies on https://docs.python.org/3.7/library/site.html#site.PREFIXES .

Our hero created a copy of the environment created by `python.withPackages` and manually modified it to confirm his findings, and it turned out it was indeed the case.
Our hero had damaged the dragon and it was time for a celebration.

He went out and acquired some mead which he ingested while he typed up his story and waited for the dragon to finally die (the commit caused a mass-rebuild, I had to wait for my repro).

In the end all was good in [NixOps-AWS](https://github.com/nixos/nixops-aws)-town and type checks could run. (PR for that incoming tomorrow).
2020-03-14 21:39:31 +00:00
adisbladis
77396a8c47
Merge pull request #81098 from bignaux/cadence
cadence: fix dbus,libjack and missing dependancies
2020-03-14 21:30:57 +00:00
R. RyanTM
73d7dbf272 fluxctl: 1.17.1 -> 1.18.0 2020-03-14 21:18:51 +00:00
R. RyanTM
fd9a2e7e38 k9s: 0.13.8 -> 0.17.7 2020-03-14 21:18:27 +00:00
R. RyanTM
892827c0eb lego: 3.3.0 -> 3.4.0 2020-03-14 21:17:55 +00:00
R. RyanTM
dece4b99fa tautulli: 2.1.44 -> 2.2.0 2020-03-14 21:10:15 +00:00
Léo Gaspard
175f9ef4f8 xfce4-12: remove alias 2020-03-14 22:05:50 +01:00
Elis Hirwing
e0b1b9d556
phpPackages.exts: Add extensions 2020-03-14 21:53:59 +01:00
EEva (JPotier)
20ef86ed52 bitlbee-mastodon: 1.4.2 -> 1.4.3 2020-03-14 20:49:11 +00:00
R. RyanTM
bafbfc5a06 eagle: 9.5.2 -> 9.6.0 2020-03-14 20:19:26 +00:00
Ryan Mulligan
3be1ae971d
Merge pull request #82554 from r-ryantm/auto-update/libuninameslist
libuninameslist: 20190701 -> 20200313
2020-03-14 13:13:17 -07:00
zimbatm
001be890f7 folding@home: 6.02 -> 7.5.1
The v7 series is very different.

This commit introduces the 3 packages: fahclient, fahcontrol and
fahviewer. It also rebuilds the NixOS module to map better with the new
client.
2020-03-14 13:01:26 -07:00
zimbatm
b6fe12b1cc
cryptpad: 3.0.1 -> 3.13.0 (#82602) 2020-03-14 19:51:44 +00:00
Elis Hirwing
387d52106a
phpPackages.exts: Add alias so we have the right pcre lib 2020-03-14 20:30:28 +01:00
Elis Hirwing
b2933434f5
phpPackages: Initial work for building phpExtensions separately 2020-03-14 20:30:18 +01:00