506d4c7e44
Merge pull request #51329 from c0bw3b/cleanup/gnu-https
...
Favor HTTPS URLs - the GNU edition
2018-12-02 16:52:33 +01:00
0498ccd076
Treewide: use HTTPS on GNU domains
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HTTP -> HTTPS for :
- http://gnu.org/
- http://www.gnu.org/
- http://elpa.gnu.org/
- http://lists.gnu.org/
- http://gcc.gnu.org/
- http://ftp.gnu.org/ (except in fetchurl mirrors)
- http://bugs.gnu.org/
2018-12-02 15:51:59 +01:00
0f868d8116
Treewide: use HTTPS on SourceForge
2018-12-02 15:33:08 +01:00
a51a99c690
gobject-introspection: rename package
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camelCase package name was a huge inconsistency in GNOME package set.
2018-12-02 12:42:29 +01:00
10f40f3ac6
scilab-bin: adding application launchers
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Moving the desktop configuration files from
opt/scilab-$ver/share/applications to share/applications, making the
required changes, and moving the icons in opt/scilab-$ver/share/icons to
share/icons. Moving locales, appdata and mime out of there
opt/scilab-${ver} too. Also removing unneeded scilab-${ver} and
scilab-${majorVer} symlinks from bin/.
2018-12-02 17:53:40 +10:00
7041972128
scilab-bin: adding bin/scilab symlink ( #51346 )
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Should fix #51343 , merely adding a scilab symlink within the bin/ directory, so that it can be detected by SageMath.
2018-12-01 23:25:40 +01:00
88b69a0d40
Merge pull request #51337 from timokau/sagenb-matplotlib-fix
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sage: misc fixes
2018-12-01 22:04:48 +01:00
0e570199de
sage: fix jmol integration
2018-12-01 21:31:29 +01:00
cb73495f02
sagenb: fix matplotlib path
2018-12-01 20:41:40 +01:00
d9b650f4cc
pythonPackages.cypari2: 1.3.1 -> 2.0.1 ( #49446 )
2018-12-01 12:57:55 +01:00
76c7a8bac0
Merge pull request #51205 from matthewbauer/more-setup-hooks
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Add premake & imake setup hook
2018-11-29 19:36:25 -06:00
c0a804c747
treewide: add dontUseImakeConfigure where needed
...
We need to set dontUseImakeConfigure in a few places to prevent imake
from overriding the default configure phase. This packages all have a
configure script that needs to get run:
- Xaw3d
- R
- tkgate
- ssvnc
2018-11-28 20:14:45 -06:00
d6376bca6d
sage: don't test the downgraded R
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Fails transiently. See https://github.com/NixOS/nixpkgs/pull/49249 . The
failures look harmless and are fixed with R 3.5 which will be used in
sage 8.5.
2018-11-28 22:52:15 +01:00
359bf7f1e3
sage: disable test timeout
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Hydra build failed due to timeout:
https://hydra.nixos.org/build/84870983
2018-11-28 22:37:24 +01:00
4900bbee17
sage: preload openblasCompat
2018-11-28 20:44:09 +01:00
7ca2915a50
sage: 8.5.beta4 -> 8.5.beta5
2018-11-27 18:26:16 +01:00
2dd9a0ed72
Merge remote-tracking branch 'upstream/master' into sage-8.5
2018-11-27 18:25:39 +01:00
90cebaf828
sage: 8.5.beta3 -> 8.5.beta4
2018-11-25 19:39:18 +01:00
2a87caa892
sage: 8.5.beta2 -> 8.5.beta3
2018-11-25 19:39:17 +01:00
3370247f7f
sage: 8.5.beta1 -> 8.5.beta2
2018-11-25 19:39:17 +01:00
883aa99226
sage: add short tests
2018-11-25 19:39:13 +01:00
8e7da1b8a4
sage: 8.5.beta0 -> 8.5.beta1
2018-11-25 19:36:21 +01:00
6138f5d5eb
sage: 8.4 -> 8.5.beta0
2018-11-25 19:36:21 +01:00
2fbde72556
sage: add tkinter as matplotlib backend ( #51032 )
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Fixes #50959 .
2018-11-25 17:38:45 +01:00
98c94d3d7d
sage: add jupyter notebook support
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Fixes #48544 .
2018-11-25 15:54:31 +01:00
0c23fa9aaf
Merge pull request #50998 from timokau/sage-refactor
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Sage refactor
2018-11-24 23:59:28 +01:00
a0723f1285
sage: don't fix node version
2018-11-24 23:14:38 +01:00
e28a8ed287
sage: add some flexibility to the test runner
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Make it possible to run individual tests. This is very useful while
git-bisecting.
2018-11-24 23:14:38 +01:00
21f9123ea6
sage: remove openblas hack
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The pc files have since been included into the openblas package.
2018-11-24 23:14:38 +01:00
3832ddedb9
sage: refactor
2018-11-24 23:14:33 +01:00
0ea604ac1d
Treewide: use https for SourceForge
2018-11-24 19:58:03 +01:00
9b4a518465
sage: drop known-padics-failure patch
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The failure was not observed for a while and is probably fixed now.
2018-11-24 19:01:57 +01:00
ca6475b5e8
sage: drop unused patches
2018-11-24 19:01:57 +01:00
6fe39605df
polymake: init at 3.2r4
2018-11-22 12:29:14 +03:00
fd26e7be2a
Merge master into staging-next
2018-11-20 11:47:26 +01:00
0ec2af3736
gmsh: 4.0.4 -> 4.0.5
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Manually updated
2018-11-19 11:12:38 -05:00
63c6875f26
Merge master into staging-next
2018-11-18 10:32:12 +01:00
131f2e93b6
sage: unpin nodePackage version
2018-11-16 21:24:25 +00:00
650036f022
Merge pull request #50359 from jfrankenau/gurobi-java
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gurobi: install Java library files
2018-11-15 14:13:47 +01:00
b4e13e6257
gurobi: install Java library files
2018-11-14 19:38:18 +01:00
7ca9d67948
Merge pull request #50102 from r-ryantm/auto-update/gp2c
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gp2c: 0.0.11 -> 0.0.11pl1
2018-11-14 16:07:49 +01:00
f597a88542
Merge pull request #50101 from r-ryantm/auto-update/gmsh
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gmsh: 4.0.2 -> 4.0.4
2018-11-14 12:46:48 +01:00
644ab709e7
gmsh: restrict platform to x86_64-linux
2018-11-14 12:33:37 +01:00
ced40eabfd
gmsh: use openblas instead of atlas/lapack
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* openblas is properly recognized by cmake
* the cmake patch is no longer neccessary
2018-11-14 11:41:46 +01:00
2e18ba6c5a
Merge pull request #49776 from matthewbauer/atlas-remove
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atlas: remove
2018-11-13 19:18:35 -06:00
daf3297cb4
Merge master into staging-next
2018-11-12 18:59:08 +01:00
22a802584f
Merge pull request #50179 from Thra11/r-without-jdk
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R: Remove jdk dependency on aarch32/64
2018-11-12 12:42:39 +01:00
7863aae5b2
Merge master into staging-next
2018-11-11 08:59:44 +01:00
45a4adb1b3
Merge branch 'master' into atlas-remove
2018-11-11 02:22:04 +01:00
6533d7588d
colpack: set platform to linux
2018-11-11 02:17:49 +01:00
b51018ed2e
R: Remove jdk dependency on aarch32/64
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Add javaSupport as an argument for R. Default to false on arm as there is no free jdk on arm.
2018-11-10 20:53:26 +00:00
2fd0c31673
calc: 2.12.6.8 -> 2.12.7.1 ( #50173 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
2018-11-10 15:32:06 +01:00
698ad2dd4d
nasc: 0.5.0 -> 0.5.1
2018-11-10 14:18:31 +01:00
5f2a7607fa
qalculate-gtk: 2.6.2 -> 2.8.1
2018-11-10 13:17:17 +01:00
53d00c3351
Merge master into staging-next
2018-11-10 11:08:54 +01:00
f5b4eb63f3
gp2c: 0.0.11 -> 0.0.11pl1
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gp2c/versions
2018-11-09 17:56:17 -08:00
6f2bb3c275
gmsh: 4.0.2 -> 4.0.4
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
2018-11-09 17:41:49 -08:00
efe6322ce4
pythonPackages.networkx: 2.1 -> 2.2
2018-11-07 20:15:37 +01:00
72e6e792f6
sage: add fetchSageDiff utility function
2018-11-07 20:15:37 +01:00
95373d3634
atlas: remove
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atlas is broken and can apparently be removed.
Fixes #49594
2018-11-04 20:23:12 -06:00
7f4b26681d
Merge pull request #49417 from matthewbauer/disallow-native-build-inputs
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Disallow references to nativeBuildInputs
2018-11-02 20:26:48 -05:00
3493f44727
Merge pull request #49560 from worldofpeace/eos-third-update
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update some elementary thirdparty apps
2018-11-02 21:29:57 +01:00
0a2420bccd
nasc: 0.4.7 -> 0.5.0
2018-11-02 16:01:05 -04:00
067d1cf330
Merge remote-tracking branch 'upstream/master' into staging
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Conflicts:
pkgs/applications/science/math/sage/sage-src.nix
2018-10-27 19:58:03 +03:00
2513747356
sage: fix attrname
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This is a minimal change mainly to make sure repology recognizes this
package as sage. I plan a bit more refactoring later, but this is
intentionally kept minimally invasive so that it won't break anything
and can be backported to 18.09.
2018-10-27 14:18:08 +02:00
fbea2cd77a
arb: 2.14.0 -> 2.15.1
2018-10-27 11:27:03 +02:00
2ce2fcfc30
pythonPackages.cython: 0.28.5 -> 0.29
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Needs a sage patch from
https://trac.sagemath.org/ticket/25292
2018-10-24 20:05:44 +02:00
db75fe7313
sage: fix doctest
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The test is depending on the "py2" tag always being added. I patched
that recently to make it possible to test sagedoc individually. Somehow
I missed this doctest.
2018-10-22 14:52:19 +02:00
b39142cd1f
sage: fix dochtml tests
2018-10-21 19:17:07 +02:00
38c2be5ffe
sage: fix docbuild
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This is only a hotfix without really knowing the issue. See
https://groups.google.com/forum/#!msg/sage-packaging/VU4h8IWGFLA/mrmCMocYBwAJ
2018-10-21 14:16:06 +02:00
a413dedde1
Merge pull request #44527 from timokau/sage-8.4
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[WIP] sage: 8.3 -> 8.4
2018-10-20 01:34:34 +02:00
7ca1c31dfa
sage: 8.4.rc1 -> 8.4
2018-10-18 09:58:36 +02:00
eeb2ee296c
gmsh: 4.0.1 -> 4.0.2
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
2018-10-15 21:54:45 -07:00
f89df0b556
sage: 8.4.rc0 -> 8.4.rc1
2018-10-13 13:27:10 +02:00
27919e06f1
sage: 8.4.beta7 -> 8.4.rc0
2018-10-07 12:23:10 +02:00
5200167f12
Merge pull request #47831 from r-ryantm/auto-update/calc
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calc: 2.12.6.6 -> 2.12.6.8
2018-10-04 23:31:38 +01:00
904fd99bb4
calc: 2.12.6.6 -> 2.12.6.8
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
2018-10-03 16:01:08 -07:00
98092f7a67
nauty: 26r10 -> 26r11
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/nauty/versions
2018-10-03 05:54:07 -07:00
a13eb29485
sage: 8.4.beta6 -> 8.4.beta7
2018-10-01 17:38:20 +02:00
bcc066b569
Merge remote-tracking branch 'upstream/master' into sage-8.4
2018-10-01 14:20:33 +02:00
b65fbe8fcd
gmsh: 4.0.0 -> 4.0.1 ( #47060 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
2018-09-28 22:17:32 +02:00
0be6ca9e71
sage: 8.4.beta5 -> 8.4.beta6
2018-09-27 12:08:15 +02:00
1217882907
sage: 8.4.beta4 -> 8.4.beta5
2018-09-15 17:23:14 +02:00
c3f652d5a8
Merge remote-tracking branch 'upstream/master' into sage-8.4
2018-09-15 17:22:11 +02:00
10a412f251
almonds: update license
2018-09-09 02:04:34 +02:00
1cff2dd135
pynac: add license
2018-09-08 14:48:19 +02:00
db784d883c
sage: re-add pkg-config aliases
...
Those were removed because they were added to openblas itself. There was
an error with that however and it will take some time until the fix
makes its way through staging. For the time being, reverting this part
of 26d5d030fe408eacbc89
2018-09-07 21:55:41 +02:00
770c5b8a69
sage: 8.4.beta3 -> 8.4.beta4
2018-09-07 20:56:37 +02:00
4ab832d6e7
Merge remote-tracking branch 'upstream/master' into sage-8.4
2018-09-07 20:54:09 +02:00
7521f2863d
sage: fix numpy and scipy integration
2018-09-07 18:36:52 +02:00
3e45b61a99
lib/trivial: add a few examples of usage of assertMsg/assertOneOf
2018-09-06 18:14:27 +02:00
590ce7d1ae
mxnet: fix library dependencies.
...
- mxnet now builds the open source MKL DNN library. However, this
was not included with the build.
- mxnet builds its own OpenMP library, even when OpenMP is provided
by the system. This leads to problems, so remove the included
OpenMP implementation:
https://github.com/apache/incubator-mxnet/pull/12160
2018-09-04 20:27:25 +02:00
93a5947158
mxnet: 1.1.0 -> 1.2.1 ( #46026 )
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Update and fix the build:
- Perl is a build-time requirement.
- Fix hardcoded /bin/bash invocation.
2018-09-04 11:37:54 +02:00
46e653673e
sage: 8.4.beta2 -> 8.4.beta3
2018-09-02 12:42:44 +02:00
a3434cf4e5
Merge pull request #45921 from markuskowa/homepages
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Cleanup homepage links
2018-09-02 08:39:30 +02:00
5cf25dded7
symmetrica: update homepage
2018-09-02 01:46:25 +02:00
c184150a22
jags: update homepage + fix license
2018-09-02 01:46:18 +02:00
93550cbddf
Merge branch 'master' into staging-next
2018-08-31 17:32:48 +02:00
2c2f1e37d4
reewide: Purge all uses `stdenv.system` and top-level `system`
...
It is deprecated and will be removed after 18.09.
2018-08-30 17:20:32 -04:00
6038628ea5
Merge master into staging-next
2018-08-29 20:54:55 +02:00
e301589013
gmsh: 3.0.6 -> 4.0.0 ( #45592 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions .
2018-08-27 16:06:28 +02:00
7945295410
Merge master into staging
2018-08-27 08:21:50 +02:00
c614c15f93
Merge pull request #45257 from timokau/openblas-pc
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openblas: add pkg-config aliases
2018-08-26 20:13:19 +02:00
0e4160a3a1
pythonPackages.sympy: 1.1.1 -> 1.2
2018-08-26 19:56:44 +02:00
1b42a1ba1e
sage: 8.4.beta1 -> 8.4.beta2
2018-08-26 13:09:22 +02:00
26d5d030fe
openblas: add pkg-config aliases
2018-08-21 16:39:57 +02:00
a1129ef9cb
glsurf: add license
2018-08-20 21:15:16 +02:00
3c1819fcce
ginac: add license
2018-08-20 21:02:45 +02:00
cbabebcc2e
Merge branch 'master' into staging-next
...
Hydra: ?compare=1473892
2018-08-17 13:45:21 +02:00
b7e50d52f0
caffe: add darwin support ( #44616 )
2018-08-16 12:46:51 +01:00
f207998d79
qalculate-gtk: 2.6.1 -> 2.6.2
2018-08-16 11:56:27 +02:00
22c15abe20
cplex: init at 12.8 ( #44029 )
...
* cplex: init at 12.8
* Removed bundled java from bin directory
* Refactored
* More refactoring
* Added config option for releasePath
* Minor cleanup
2018-08-15 19:46:09 -05:00
52b9217b50
sage: 8.4.beta0 -> 8.4.beta1
2018-08-16 00:17:14 +02:00
df97127114
Merge remote-tracking branch 'upstream/master' into sage-8.4
2018-08-15 13:51:07 +02:00
2937e7367f
Merge pull request #45009 from jbaum98/ratpoints-darwin
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ratpoints: 2.1.3 -> 2.1.3.p4; add darwin support
2018-08-15 15:28:39 +08:00
0ee6d7e3ab
Merge pull request #45011 from jbaum98/symmetrica-darwin
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symmetrica: Add darwin support
2018-08-15 07:54:56 +02:00
47aa6abe96
ratpoints: 2.1.3 -> 2.1.3.p4; add darwin support
2018-08-14 11:27:59 -04:00
8ae47fa81a
symmetrica: Add darwin support
2018-08-14 11:23:21 -04:00
be81e1e29c
gfan: Add darwin support
2018-08-14 00:16:46 -04:00
00df25ee57
Merge branch 'master' into staging-next
...
Hydra: ?compare=1472947
2018-08-12 10:33:41 +02:00
3babbaaa47
palp: Add darwin support ( #44829 )
2018-08-09 22:28:27 +02:00
d9fa74ba78
Merge master into staging
2018-08-09 18:28:15 +02:00
291018b34e
arb: 2.13.0 -> 2.14.0 ( #44600 )
2018-08-07 16:38:34 +02:00
0ca40a51c7
gwyddion, ripser: fix derivation name ( #44577 )
2018-08-07 01:21:53 +02:00
a8b048c686
sage: 8.3 -> 8.4.beta0
2018-08-05 21:09:56 +02:00
75cb04672f
Merge pull request #44508 from timokau/cddlib-0.94j
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cddlib: 0.94i -> 0.94j
2018-08-05 19:03:47 +00:00
0a44ff7676
cddlib: 0.94i -> 0.94j
...
cddlib was autotoolized, incorporated equivalents to the sage patches
and moved to GitHub.
2018-08-05 19:02:45 +02:00
6b0234942b
Merge pull request #44501 from timokau/sage-native-pari
...
sage: don't override pari
2018-08-05 15:14:00 +00:00
30c822189d
sage: don't override pari
...
Sage assumes that pari does not use threads. However instead of
disabling them at compile time, we can diable them at runtime instead.
As a result, sage doesn't need its own version of pari anymore. That
means less rebuilds, less complexity and easier debugging.
2018-08-05 13:48:14 +02:00
58384b1dd0
scilab-bin: 5.5.2 -> 6.0.1
2018-08-05 11:27:35 +03:00
b79dbfe482
Merge pull request #43281 from timokau/sage-8.3
...
sage: 8.2 -> 8.3
2018-08-04 13:02:06 +00:00
834a24e0ff
sage: don't pin ntl
...
Now possible because of the lcalc c++11 patch.
2018-08-04 14:22:58 +02:00
e550e5d0c7
lcalc: apply c++11 patch
2018-08-04 14:22:29 +02:00
fa34f6d41c
sage: don't pin pari
2018-08-04 14:22:28 +02:00
e82c26af9b
sage: don't pin singular
2018-08-04 14:22:28 +02:00
289173366b
singular: backport ntl error handling patch
2018-08-04 14:22:27 +02:00
840b64fdb8
sage: 8.2 -> 8.3
2018-08-04 14:22:21 +02:00
008fd5fcf5
Merge remote-tracking branch 'upstream/master' into staging
2018-08-04 15:17:42 +03:00
db965063b3
treewide: Make configureFlags lists
2018-08-03 17:06:03 -04:00
632d24f11f
scilab: Make configureFlags a list
2018-08-03 17:05:58 -04:00
ae3bbf2958
almonds: use python3
2018-08-03 18:04:46 +02:00
79cd841713
bcal: 1.8 -> 1.9
2018-08-03 09:08:26 +02:00
38c8be3726
gp2c: 0.0.10pl1 -> 0.0.11 ( #43941 )
...
Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/gp2c/versions .
2018-07-31 00:30:21 +02:00
ae821e09e7
glpk: adopt error recovery patch ( #44201 )
...
This makes it possible to use "vanilla" glpk for sage and shouldn't
affect anything else.
2018-07-29 20:53:56 +02:00
1fe2a0f81e
Merge pull request #44129 from timokau/pari-2.11.0
...
pari: 2.9.5 -> 2.11.0
2018-07-27 11:57:57 +02:00
330c501be0
pari: 2.9.5 -> 2.11.0
...
The pari update makes it necessary to disable a giac test that only
fails because it directly tests the pari interface.
2018-07-26 18:42:17 +02:00
024c23503c
singular: 4.1.1p1 -> 4.1.1p2
2018-07-23 12:17:25 +02:00
218298b30f
Merge branch 'master' into unused5
2018-07-21 15:41:22 +01:00
52f53c69ce
pkgs/*: remove unreferenced function arguments
2018-07-21 02:48:04 +00:00
6d2857a311
[bot] treewide: remove unused 'inherit' in let blocks
2018-07-20 19:38:19 +00:00
markuskowa
c0bw3b
Jan Tojnar
Brenton Horne
Timo Kaufmann
Matthew Bauer
Michael Raskin
Frederik Rietdijk
luzpaz
Jörg Thalheim
Johannes Frankenau
Markus Kowalewski
Peter Simons
Tom Hall
R. RyanTM
Gabriel Ebner
worldofpeace
Tuomas Tynkkynen
Jörg Thalheim
Silvan Mosberger
Profpatsch
Daniël de Kok
Daniël de Kok
xeji
Robert Schütz
John Ericson
Vladimír Čunát
zimbatm
Bernard Fortz
adisbladis
Jake Waksbaum
symphorien
Tuomas Tynkkynen
Frederik Rietdijk
volth