c1b7c7e87c
snakemake: 5.16.0 -> 5.17.0 ( #88766 )
2020-05-24 13:32:14 -04:00
28357868f8
Merge pull request #88482 from r-ryantm/auto-update/fahcontrol
...
fahcontrol: 7.6.9 -> 7.6.13
2020-05-21 12:12:37 +02:00
1f6fcc7025
Merge pull request #88493 from r-ryantm/auto-update/fahviewer
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fahviewer: 7.6.9 -> 7.6.13
2020-05-21 12:12:01 +02:00
f52889cd38
fahviewer: 7.6.9 -> 7.6.13
2020-05-21 08:53:14 +00:00
0cc843b538
fahcontrol: 7.6.9 -> 7.6.13
2020-05-21 06:24:27 +00:00
b7c5508bfc
Merge pull request #86910 from lsix/cytoscape-3.8.0
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cytoscape: 3.7.2 -> 3.8.0
2020-05-19 08:32:48 +01:00
e8215cd634
colmap: update boost to 1.72 to fix build
2020-05-15 09:42:36 -07:00
92d970c766
snakemake: 5.15.0 -> 5.16.0 ( #87496 )
2020-05-10 10:09:53 -04:00
b9d13090a8
cytoscape: 3.7.2 -> 3.8.0
...
See https://cytoscape.org/release_notes_3_8_0.html for release
information
2020-05-05 09:52:27 +01:00
e257a92472
foldingathome: 7.5.1 -> 7.6.9 ( #86171 )
2020-04-28 17:20:43 +00:00
22133c6bf3
snakemake: 5.13.0 -> 5.15.0 ( #85913 )
2020-04-25 09:19:54 -04:00
f527f9db3a
snakemake: update homepage link to use HTTPS
2020-04-24 19:44:59 -07:00
40dd2c27c6
rink: update homepage link to use HTTPS
2020-04-24 19:44:59 -07:00
1c8aba8334
treewide: use blas and lapack
...
This makes packages use lapack and blas, which can wrap different
BLAS/LAPACK implementations.
treewide: cleanup from blas/lapack changes
A few issues in the original treewide:
- can’t assume blas64 is a bool
- unused commented code
2020-04-17 16:24:09 -05:00
84cf00f980
treewide: Per RFC45, remove all unquoted URLs
2020-04-10 17:54:53 +01:00
cff5adc2fb
snakemake: 5.10.0 -> 5.13.0 ( #83839 )
2020-03-31 00:39:00 -04:00
e841dce44a
rink: fix strict deps build
2020-03-29 12:37:25 +01:00
39767f8ae5
foldingathome: Make FAHControl be able to start the FAHViewer ( #82925 )
...
The command to run when clicking the button is configurable, but by default it
tries to run `FAHViewer`.
2020-03-19 13:05:54 +00:00
68db99ad97
snakemake: 5.9.1 -> 5.10.0
2020-03-14 15:58:24 -07:00
001be890f7
folding@home: 6.02 -> 7.5.1
...
The v7 series is very different.
This commit introduces the 3 packages: fahclient, fahcontrol and
fahviewer. It also rebuilds the NixOS module to map better with the new
client.
2020-03-14 13:01:26 -07:00
ad30a30488
rustPlatform.fetchCargo: handle custom Cargo.lock patchfiles with validation
...
Previously, we would asssert that the lockfiles are consistent during the
unpackPhase, but if the pkg has a patch for the lockfile itself then we must
wait until the patchPhase is complete to check.
This also removes an implicity dependency on the src attribute coming from
`fetchzip` / `fetchFromGitHub`, which happens to name the source directory
"source". Now we glob for it, so different fetchers will work consistently.
2020-02-28 18:54:23 -08:00
eb11feaa0b
treewide: change fetchCargoTarball default to opt-out
...
Changes the default fetcher in the Rust Platform to be the newer
`fetchCargoTarball`, and changes every application using the current default to
instead opt out.
This commit does not change any hashes or cause any rebuilds. Once integrated,
we will start deleting the opt-outs and recomputing hashes.
See #79975 for details.
2020-02-13 22:41:37 -08:00
150f4a967c
simgrid: 3.24 -> 3.25
2020-02-03 10:37:03 -08:00
a94c66bc88
snakemake: 5.8.1 -> 5.9.1
2020-01-30 09:44:26 +00:00
bc8dc2bd0a
rink: add filalex77 to maintainers
2020-01-06 12:41:19 +02:00
8d8ce109cb
rink: 0.4.4 -> 0.4.5
2020-01-06 12:39:32 +02:00
6d059becd3
Merge gcc-9 into staging ( #68029 )
2019-12-30 16:38:38 +01:00
133103d709
treewide: replace make/build/configure/patchFlags with nix lists
2019-12-30 12:58:11 +01:00
1065d80dd3
simgrid: *Flags are lists
2019-12-30 12:15:25 +01:00
0b28198f23
root: wrap python executables
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In normal use of ROOT the PYTHONPATH is intended to be set when user
sources the thisroot.{,s}sh. We do that in the setupHook. This covers
the case when thisroot.sh was not sourced.
2019-12-26 11:49:12 -05:00
77b6c3cd06
Merge remote-tracking branch 'origin/master' into gcc-9
2019-12-26 14:17:36 +01:00
aee453e5c9
openmodelica: remove pangox dependency
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It was probably just a dependency of `gtkglext` since I cannot find any reference to `pangox` in the repo.
But cannot verify build since it is broken.
2019-12-24 16:13:13 +01:00
b6d8873825
root: 6.12.06 -> 6.18.04
...
Also switch to python3.
2019-12-14 01:28:27 -08:00
13c757e69c
snakemake: 5.7.4 -> 5.8.1 ( #74637 )
2019-12-09 20:47:24 +01:00
1850d616ac
NetLogo: 6.0.4 -> 6.1.1
2019-12-07 22:24:26 +01:00
1451a52a38
Remove myself (fuuzetsu) from maintainer lists
...
I haven't been doing any maintenance for a long time now and not only
do I get notified, it also creates a fake impression that all these
packages had at least one maintainer when in practice they had none.
2019-12-05 16:29:48 +09:00
0c1c18ca44
Merge branch 'master' into staging-next
2019-11-27 22:57:50 -08:00
bd0c4dd6ab
root: fix setupHook to work with "set -u"
2019-11-24 17:51:46 -05:00
c5e3aec122
golly: fix build
2019-11-22 17:41:46 +01:00
c9d8624ccd
treewide: Get rid of libGLU_combined
2019-11-18 20:10:43 +00:00
93ee8095b0
snakemake: 5.4.4 -> 5.7.4 ( #72929 )
...
(#72929 )
2019-11-13 00:46:56 +01:00
dffcb87383
colmap: fix build with gcc9
2019-11-03 14:43:33 +01:00
b73b9399ba
golly: 3.2 -> 3.3
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/golly/versions
2019-10-21 11:24:52 -07:00
5b9cbeb75c
simgrid: 3.23 -> 3.24
2019-10-14 16:08:43 +02:00
063c82fd2f
Merge pull request #68773 from mimame/update/cytoscape-3.7.2
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cytoscape: 3.7.1 -> 3.7.2
2019-09-15 09:43:11 -04:00
148c82e07e
maintainer: mimadrid: update github username and personal data
2019-09-14 12:15:46 +02:00
40b760e07c
cytoscape: 3.7.1 -> 3.7.2
2019-09-14 10:52:46 +02:00
7b8fb5c06c
treewide: remove redundant quotes
2019-09-08 23:38:31 +00:00
98ef78326d
Merge staging-next into staging
2019-08-31 18:07:33 +02:00
96e5474329
Merge master into staging-next
2019-08-31 18:04:31 +02:00
35ac3344e7
colmap: init at 3.5 ( #67759 )
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* colmap: init at 3.5
2019-08-31 08:06:46 -04:00
7bb6b373ab
treewide: name -> pname ( #67513 )
2019-08-31 07:41:22 -04:00
08f68313a4
treewide: remove redundant rec
2019-08-28 11:07:32 +00:00
2e6bf42a22
Merge branch 'master' into staging-next
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There ver very many conflicts, basically all due to
name -> pname+version. Fortunately, almost everything was auto-resolved
by kdiff3, and for now I just fixed up a couple evaluation problems,
as verified by the tarball job. There might be some fallback to these
conflicts, but I believe it should be minimal.
Hydra nixpkgs: ?compare=1538299
2019-08-24 08:55:37 +02:00
187ec1a8c6
tulip: 5.1.0 -> 5.2.1
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/tulip/versions
2019-08-20 19:45:43 -07:00
c814d72b51
treewide: name -> pname
2019-08-17 10:54:38 +00:00
46420bbaa3
treewide: name -> pname (easy cases) ( #66585 )
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treewide replacement of
stdenv.mkDerivation rec {
name = "*-${version}";
version = "*";
to pname
2019-08-15 13:41:18 +01:00
2e955ca4c5
motu_client: drop
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This fork of cls-motu is unmaintained. Remove it from nixpkgs.
2019-08-05 14:32:25 +02:00
b5d1d50aa9
google-gflags: move to aliases.nix
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google-gflags were renamed to gflags in 2012:
https://github.com/gflags/gflags/#25-january-2012
gflags.name will be updated in staging.
2019-07-25 09:18:32 +00:00
79a03641d5
Merge staging-next into staging
2019-07-09 15:46:26 +02:00
0513ae77ff
simgrid: 3.22.2 -> 3.23
2019-07-08 14:00:14 +02:00
da7bcec42f
root: remove cf-private
2019-07-03 22:20:22 +02:00
062210bdff
treewide: update cargoSha256 hashes for cargo-vendor upgrade
...
A recent upgrade of cargo-vendor changed its output slightly, which
broke all cargoSha256 hashes in nixpkgs.
See https://github.com/NixOS/nixpkgs/issues/60668 for more information.
Since then, a few hashes have been fixed in master by hand, but there
were a lot still to do, so I did all of the ones left over with some
scripts I wrote.
The one hash I wasn’t able to update was habitat's, because it’s
currently broken and the build doesn’t get far enough to produce a
hash anyway.
2019-06-01 15:17:52 +00:00
13aa449bab
simgrid: remove unneeded 'name' definition
2019-05-15 12:35:12 +02:00
00fc5bd08f
simgrid: override checkPhase -> preCheck
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This commit changes how failing tests are ignored.
- Previously, the whole checkPhase was overridden.
- Now, preCheck generates a ctest ignore file.
ctest doc: https://gitlab.kitware.com/cmake/community/wikis/doc/ctest/Testing-With-CTest#customizing-ctest
2019-05-14 18:27:51 +02:00
aa29b79e8a
simgrid: fetchgit -> fetchFromGitLab
2019-05-13 21:26:09 +02:00
c7ab2b9499
simgrid: 3.21 -> 3.22.2
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- GitHub -> Framagit (SimGrid main repo has moved)
- Test binaries must now be explicitly compiled (`make tests`)
- Fix broken documentation link
2019-05-13 18:58:27 +02:00
bac4d95aa2
treewide: Change URLs to HTTPS
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Lots of URLs were HTTP redirect to HTTPS. Changed those and checked them
if there's actual content. Inspired by
https://github.com/NixOS/nixpkgs/issues/60004
2019-04-22 10:19:54 +02:00
f475aeaf29
Merge pull request #59535 from matthewbauer/homepage-fixes
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treewide: update homepages to https where available
2019-04-15 20:47:30 -04:00
290a5d916e
treewide: update homepages to https where available
...
Based on "problems" from repology:
https://repology.org/repository/nix_unstable/problems
Mostly simple changes to reflect redirects.
2019-04-15 10:10:05 -04:00
796050fedd
openmvs: mark as broken
2019-04-14 17:45:21 +02:00
c321b64b3f
snakemake: 5.2.2 -> 5.4.4
2019-04-10 14:18:26 -04:00
c36f841ec7
root5: fix build
2019-03-20 00:26:13 -04:00
136126ceae
Merge pull request #56498 from ariutta/patch-1
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cytoscape: bump 3.6.1 -> 3.7.1
2019-03-11 11:20:50 +08:00
d3ff902e94
webkit: move to aliases
2019-03-06 00:20:55 +01:00
aa4f5cc4a3
simgrid: Fix the upstream project URL
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Closes : #56849
2019-03-04 16:42:46 -05:00
c792fd107b
cytoscape: bump 3.6.1 -> 3.7.1
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Needed to update URL, because `wget "http://chianti.ucsd.edu/cytoscape-3.7.1/cytoscape-3.7.1.tar.gz "` returns `404`.
2019-02-27 16:40:50 -08:00
3b03b901fb
rink: init at 0.4.4
2019-02-03 13:29:18 +08:00
bde8efe792
Merge branch 'master' into staging-next
...
A couple thousand rebuilds have accumulated on master.
2019-01-12 12:19:34 +01:00
73625f2522
root5: mark as broken on Linux
2019-01-11 20:45:37 -05:00
0c9335fb1c
root, root5: fix build on darwin
2019-01-11 20:45:37 -05:00
287144e342
Merge branch 'master' into staging-next
2019-01-10 13:07:21 +01:00
71f216b7e6
golly-beta: link with lib{dl,GL} explicitly
2019-01-04 21:44:19 +00:00
0a2caa41fe
Python: drop `python.majorVersion`
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Drop `python.majorVersion`. For Python language version, use `python.pythonVersion`.
For implementation version, use `python.sourceVersion`.
Some expressions were broken. Those that were identified were fixed.
fixup major
2019-01-04 10:45:22 +01:00
0f868d8116
Treewide: use HTTPS on SourceForge
2018-12-02 15:33:08 +01:00
a5de78b7d7
Merge branch 'master' into staging-next
2018-11-26 10:28:00 +01:00
0ea604ac1d
Treewide: use https for SourceForge
2018-11-24 19:58:03 +01:00
c31cb577ae
Merge master into staging-next
2018-11-22 09:57:08 +01:00
2e70b40f58
Merge pull request #49376 from dpaetzel/package-netlogo
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NetLogo: init 6.0.4
2018-11-21 21:37:01 -05:00
fa623ad828
netlogo: init 6.0.4
2018-11-21 09:38:22 +01:00
0d0d7dcd06
Merge staging-next into staging
2018-11-18 10:41:34 +01:00
c93b16829c
boinc: 7.8.0 -> 7.14.2
2018-11-16 15:52:22 -05:00
9ec40cc3bf
treewide: Fix overrides having wrong versions
2018-11-06 00:06:21 +01:00
4f8cac02c6
simgrid: 3.20 -> 3.21
2018-11-02 14:23:39 +01:00
6be90bf8d7
sasmodels: unstable -> 4.2.0
2018-10-17 14:36:46 +01:00
3187db6e8d
root5: init at 5.34.36
2018-09-24 14:34:49 -04:00
70e254d6bd
root: add license
2018-09-08 14:51:28 +02:00
318c9296fa
snakemake: add maintainers ( #46117 )
2018-09-05 21:46:17 +02:00
93ce77af40
python.pkgs.snakemake: init at 5.2.2
2018-09-01 09:18:19 -04:00
cbabebcc2e
Merge branch 'master' into staging-next
...
Hydra: ?compare=1473892
2018-08-17 13:45:21 +02:00
R. RyanTM
zimbatm
Lancelot SIX
Matt Huszagh
Lancelot SIX
evils
Renato Garcia
Konrad Borowski
Matthew Bauer
Michael Reilly
Jörg Thalheim
Claudio Bley
Dmitry Kalinkin
Benjamin Hipple
Millian Poquet
Oleksii Filonenko
Frederik Rietdijk
Merijn Broeren
Robin Gloster
Franz Pletz
Jan Tojnar
Calvin Pritchard
Mateusz Kowalczyk
Jonathan Ringer
Michael Raskin
adisbladis
Aaron Andersen
Miguel Madrid Mencía
volth
Alexander
Vladimír Čunát
Orivej Desh
Daiderd Jordan
Alyssa Ross
Daniel Schaefer
Peter Hoeg
Anders Riutta
Sebastien Bourdeauducq
Vladimír Čunát
Piotr Bogdan
c0bw3b
worldofpeace
David Pätzel
Kevin Liu
Patrick Hilhorst
Tristan Helmich (omniIT)
Adam Washington
Markus Kowalewski
Sebastian Meric de Bellefon