65a42ceda5
openlibm: 0.7.3 -> 0.7.4
2021-02-03 18:45:30 +00:00
02ee14b9d5
treewide: stdenvNoCC.lib -> lib
2021-01-27 13:01:51 +07:00
bc0d605cf1
treewide: fix double quoted strings in meta.description
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Signed-off-by: Ben Siraphob <bensiraphob@gmail.com>
2021-01-24 19:56:59 +07:00
b6a09f8887
scalapack: fix building with mpich
2021-01-23 12:15:18 +01:00
66e44425c6
pkgs/development/libraries: stdenv.lib -> lib
2021-01-21 19:11:02 -08:00
da3630979c
primesieve: 7.5 -> 7.6
2021-01-21 02:02:31 +00:00
31f5dd3f36
treewide: editorconfig fixes
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- remove trailing whitespace
- use spaces for indentation
2021-01-20 09:11:11 +10:00
9bb3fccb5b
treewide: pkgs.pkgconfig -> pkgs.pkg-config, move pkgconfig to alias.nix
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continuation of #109595
pkgconfig was aliased in 2018, however, it remained in
all-packages.nix due to its wide usage. This cleans
up the remaining references to pkgs.pkgsconfig and
moves the entry to aliases.nix.
python3Packages.pkgconfig remained unchanged because
it's the canonical name of the upstream package
on pypi.
2021-01-19 01:16:25 -08:00
84d0ecfc5f
ns-3: Fix hash for 3.33 and patch for upstream bug
2021-01-17 14:41:38 +01:00
71a9060bca
ns-3: 3.32 -> 3.33
2021-01-16 16:20:36 +01:00
58b572bfa7
libtensorflow: update TensorFlow-as-library to version 2.4.0
2021-01-12 16:45:03 +01:00
0137860077
openblas: 0.3.12 -> 0.3.13
2021-01-04 00:22:23 -08:00
581059aed4
Merge staging-next into staging
2021-01-04 00:57:38 +00:00
f52263ced0
treewide: Start to break up static overlay
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We can use use `stdenv.hostPlatform.isStatic` instead, and move the
logic per package. The least opionated benefit of this is that it makes
it much easier to replace packages with modified ones, as there is no
longer any issue of overlay order.
CC @FRidh @matthewbauer
2021-01-03 19:18:16 +00:00
3ae5e6ce03
treewide: remove enableParallelBuilding = true if using cmake
2021-01-03 18:37:40 +07:00
b04fc593e7
treewide: cmake buildInputs to nativeBuildInputs, minor cleanups
2021-01-01 11:52:33 +07:00
c3356a6e1c
Merge pull request #97306 from danieldk/openblas-avx512
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openblas: re-enable AVX512 support
2020-12-29 05:43:05 -06:00
0be441df8b
libtorch-bin: 1.7.0 -> 1.7.1
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Changelog:
https://github.com/pytorch/pytorch/releases/tag/v1.7.1
2020-12-11 07:36:36 +01:00
da518c1c1b
petsc: 3.14.1 -> 3.14.2
2020-12-09 23:31:34 +00:00
dfd949d9b2
magma: 2.5.3 -> 2.5.4
2020-12-06 10:56:20 -08:00
4a5e1fbc8e
Merge pull request #98485 from doronbehar/pkg/suitesparse
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suitesparse: 5.7.2 -> 5.8.1
2020-12-04 21:33:22 -06:00
5d8ae7e7b3
mkl: 2020.3.279 -> 2020.4.304
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Release notes:
https://software.intel.com/content/www/us/en/develop/articles/intel-math-kernel-library-release-notes-and-new-features.html
2020-11-29 08:42:33 +01:00
af0b2ddd82
Merge pull request #104632 from r-ryantm/auto-update/blis
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blis: 0.7.0 -> 0.8.0
2020-11-28 19:48:03 +01:00
b431a2bf0c
Merge pull request #103682 from evils/elvis
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fix some dead meta.homepage entries
2020-11-26 17:35:38 +01:00
78a06ae6be
Merge pull request #104305 from r-ryantm/auto-update/petsc
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petsc: 3.14.0 -> 3.14.1
2020-11-23 14:07:11 +01:00
cfe1f2d9ac
blis: 0.7.0 -> 0.8.0
2020-11-22 20:51:51 +00:00
69dfe8d67a
openlibm: 0.7.2 -> 0.7.3
2020-11-22 06:23:37 +00:00
ed7a64c4ee
qcsxcad: migrate to Qt511 + additional cleanup
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* Split into multiple outputs
* Rewrite the derivation without stdenv
2020-11-20 22:24:18 +01:00
af6dbe82b4
Merge pull request #104265 from danieldk/sync-cudnn-with-toolkit
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cudnn_cudatoolkit_10: 10.1 -> 10.2
2020-11-20 13:34:18 +01:00
a1d06b98ce
petsc: 3.14.0 -> 3.14.1
2020-11-19 19:49:01 +00:00
1bdeea7fc8
cudnn_cudatoolkit_10: 10.1 -> 10.2
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cudatoolkit_10 is currently CUDA 10.2, whereas cudnn_cudatoolkit_10
was using CuDNN with CUDA 10.1. This change rectifies that
discrepancy.
2020-11-19 10:19:54 +01:00
ff8338343b
maintainers: create sage team
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Maintaining all the packages whose updates might break some aspect of
sage.
For reference:
https://github.com/NixOS/nixpkgs/pull/103810#issuecomment-727536510
2020-11-18 21:27:37 +01:00
9b3475be26
openlibm: update meta.homepage
2020-11-13 10:06:11 +01:00
da115b4c56
Merge pull request #103120 from danieldk/libtorch-bin-cmake-fix-lib-paths
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libtorch-bin: fix CMake library paths for split outputs
2020-11-10 12:10:38 +01:00
20f001c01e
Merge master into staging-next
2020-11-09 14:33:52 +01:00
2802a021e3
libtorch-bin: modify passthru test to capture CMake misconfiguration
2020-11-09 07:49:54 +01:00
e8721af065
libtorch-bin: fix CMake library paths for split outputs
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The libtorch CMake files are in the `dev` output and used relative
paths to locate the shared libraries. This fails, because the
libraries are in the `out` output. This change patches the CMake files
to use library paths from `out`.
See #102146 .
2020-11-09 07:49:54 +01:00
d36077239c
Merge pull request #103078 from danieldk/cleanup-libtorch-bin-test
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libtorch-bin: cleanup passthru test
2020-11-09 07:49:03 +01:00
a71f07694c
libtorch-bin: cleanup passthru test
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- Make passthru.tests an attrset.
- Remove CMake VERBOSE option.
- Remove spurious `cat CMakeLists.txt`.
- Run the test as well.
- Actually test some functionality.
2020-11-07 13:50:23 +01:00
99fb79ae84
Merge master into staging-next
2020-11-06 12:51:56 +01:00
b5d27eb87c
mkl: Add a small test program
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The MKL pkg-config files often change and are then incorrect for our
paths. pkg-config validation finds some issues, but not incorrect
paths. So, add a small test program to test whether the generated
pkg-config files can actually be used to build a functioning
binary. Hopefully this catches future regressions.
2020-11-06 12:18:56 +01:00
702b626570
mkl: Fix pkg-config file
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There was a spurious `intel64` in some library paths.
2020-11-06 09:55:12 +01:00
4d507f9002
petsc: 3.13.4 -> 3.14.0
2020-11-04 07:59:18 +00:00
d1d536cc07
openblas: 0.3.10 -> 0.3.12
...
https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.11
https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.12
2020-11-01 10:58:02 +01:00
019fa5f608
htslib: 1.10.2 -> 1.11 ( #100812 )
2020-10-29 11:18:29 +01:00
4ce6364e29
ns-3: 3.30 -> 3.32
2020-10-28 20:22:15 +01:00
442ba6668f
libtorch-bin: 1.6.0 -> 1.7.0
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Changelog:
https://github.com/pytorch/pytorch/releases/tag/v1.7.0
2020-10-28 13:23:35 +01:00
db74029e3e
treewide: remove package names from prefix of descriptions
2020-10-27 09:15:07 -07:00
1007e8140a
openlibm: 0.7.1 -> 0.7.2
2020-10-26 00:47:50 +00:00
c873f13eac
Merge pull request #101031 from r-burns/spooles
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spooles: fix build on darwin
2020-10-19 19:07:03 +01:00
c04219a9d5
spooles: fix build on darwin
2020-10-18 13:32:45 -07:00
e9f8c385c0
Merge pull request #100870 from r-ryantm/auto-update/brial
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brial: 1.2.8 -> 1.2.10
2020-10-18 10:37:47 +02:00
57738e9b6f
brial: 1.2.8 -> 1.2.10
2020-10-17 19:37:17 +00:00
e20652da9b
elastix: 5.0.0 -> 5.0.1; unbreak OS X build
2020-10-17 11:36:31 -07:00
683a87dbeb
treewide: remove periods from end of package descriptions
2020-10-17 08:22:31 -07:00
338b25697c
Merge branch 'master' into staging-next
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Quite many rebuilds from master:
> Estimating rebuild amount by counting changed Hydra jobs.
> 3926 x86_64-darwin
> 4645 x86_64-linux
2020-10-10 11:32:10 +02:00
ec28e32c9e
Merge master into staging-next
2020-10-08 21:47:26 +02:00
f849b13978
Merge pull request #98571 from bcdarwin/gifticlib
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gifticlib: init at unstable-2020-07-07
2020-10-08 21:48:31 +02:00
44d854af30
bicgl: update LIBMINC_DIR due to libminc CMake changes
2020-10-06 15:31:19 -04:00
85946918ac
oobicpl: update LIBMINC_DIR due to libminc CMake changes
2020-10-06 15:31:17 -04:00
2c33e9d1a4
bicpl: fix LIBMINC_DIR due to libminc CMake changes
2020-10-06 15:31:15 -04:00
da69e470f2
EBTKS: update LIBMINC_DIR due to libminc update
2020-10-06 15:31:15 -04:00
692d219a93
Merge staging-next into staging
2020-10-06 10:25:58 +02:00
7902256cfd
openblas: enable multiple outputs
2020-10-05 16:15:14 -07:00
6bbfd17e34
suitesparse: assert that compatible lapack and blas are used
2020-10-01 21:53:44 +03:00
b34ca89335
suitesparse: 5.7.2 -> 5.8.1
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Update dependencies. Remove not needed `BLAS` and `LAPACK` makeFlags for
non darwin systems.
2020-10-01 21:53:21 +03:00
27f084d817
Merge pull request #98779 from r-ryantm/auto-update/libbraiding
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libbraiding: 1.0 -> 1.1
2020-09-28 11:11:06 +02:00
f175cb4478
libbraiding: 1.0 -> 1.1
2020-09-25 18:52:32 +00:00
ced2c4a0ec
cliquer: 1.21 -> 1.22
2020-09-25 02:29:32 +00:00
8a3c9812cc
gifticlib: init at unstable-2020-07-07
2020-09-23 12:07:37 -04:00
c85fc341b0
pytorch: update to use passthru's for checks
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This makes the checks a little easier to understand - we can just
check it in the passthru. Also increase major check for cuda 11.
2020-09-10 14:23:15 -05:00
98512f3eaa
nifticlib: 2.0.0 -> 3.0.1
2020-09-09 15:26:04 -04:00
466522c919
Merge pull request #97137 from danieldk/blis-0.7.0
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blis: init at 0.7.0
2020-09-08 14:55:39 +02:00
3c4335723c
Merge pull request #97019 from danieldk/mkl-2020.2
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mkl: 2020.2.254 -> 2020.3.279
2020-09-07 13:28:27 -04:00
87ec0fb5f3
Merge pull request #96982 from graham33/fix/96981_suitesparse_dylib_names
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suitesparse: rename fixDarwinDylibNames override
2020-09-07 16:51:07 +02:00
e10228defa
suitesparse: remove custom fixDarwinDylibNames postInstall
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This shadows the regular fixDarwinDylibNames function, which is a
nativeBuildInput, and prevents it from converting some relative paths to
absolute. According to the comment this can be removed as of 5.7.2.
2020-09-06 19:57:21 +01:00
383075f38b
openblas: re-enable AVX512 support
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AVX512 support was disabled due to an issue in the AVX512 DGEMM
kernel:
https://github.com/NixOS/nixpkgs/issues/59708
However, this kernel has been replaced upstream a while ago:
https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.8
And they have enabled AVX512 kernels since then.
2020-09-06 20:46:35 +02:00
bd9c787dfd
openlibm: 0.7.0 -> 0.7.1
2020-09-05 09:19:39 +00:00
863724b3f3
blis: init at 0.7.0
2020-09-04 18:44:01 +02:00
405f49dc4a
mkl: 2020.2.254 -> 2020.3.279
...
Release notes:
https://software.intel.com/content/www/us/en/develop/articles/intel-math-kernel-library-release-notes-and-new-features.html
2020-09-03 15:29:10 +02:00
8e6f466967
Merge pull request #96563 from obsidiansystems/skip-cudnn_cnn_infer-instead-of-removing
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cudnn: skip libcudnn_cnn_infer.so, instead of removing
2020-09-02 16:29:28 -05:00
5f28c07087
suitesparse-graphblas: 3.3.0 -> 3.3.3
2020-09-01 23:31:10 +02:00
35e19d22c1
libtorch-bin: init at 1.6.0
2020-08-30 13:22:09 +02:00
ed950bb104
cudnn: skip libcudnn_cnn_infer.so, instead of removing
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This is needed to build the CUDNN samples, so we should make sure it
winds up in $out/lib. The library is too big to support patchelf, so
we need to skip it. Most programs will still get the opengl path
because it also links to other libraries.
2020-08-28 15:16:15 -05:00
5af070fb0c
petsc: 3.13.3 -> 3.13.4
2020-08-27 04:53:49 +00:00
d41c129198
Merge pull request #95727 from obsidiansystems/cuda11
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cudatoolkit: init v11.0.3
2020-08-26 15:09:08 -04:00
0a874ff2a6
Merge master into staging-next
2020-08-24 11:50:58 +02:00
bebe5c963f
Merge pull request #95739 from danieldk/magma-2.5.3
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magma: 2.5.0 -> 2.5.3
2020-08-23 10:58:21 +02:00
91104b5417
Merge branch 'master' into staging-next
2020-08-23 02:00:50 +02:00
23962528ce
Merge pull request #93703 from taktoa/master
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osqp: init at 0.6.0
2020-08-20 02:03:08 +02:00
abba9a2154
nccl: 2.4.8-1 -> 2.7.8-1
2020-08-19 13:34:56 -05:00
164f8024e9
cudatoolkit: init v11.0.3
2020-08-19 13:34:52 -05:00
147e24dcd6
magma: 2.5.0 -> 2.5.3
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Other changes:
- Move gfortran and cmake to nativeBuildInputs.
- Magma now (only) generates dynamic libraries by default.
- Use ninja for faster builds.
2020-08-18 11:18:08 +02:00
d59c57f8a6
Merge pull request #92412 from matthewbauer/blas-cross
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Blas/Lapack cross fixes
2020-08-15 08:55:57 +02:00
a49a59bc6c
amd-libflame: init at 2.2
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libflame is a protable library for dense matrix computations,
providing a complete LAPACK implementation. The AMD fork of libflame
is optimized for AMD CPUs.
2020-08-09 08:29:08 +02:00
c473490524
osqp: init at 0.6.0
2020-08-08 13:32:51 -07:00
57d4c67fb8
Merge pull request #93052 from danieldk/amd-blis-zen-only
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amd-blis: init at 2.2
2020-08-08 20:01:24 +02:00
ca9c2e3548
petsc: 3.13.2 -> 3.13.3
2020-08-07 12:44:29 +10:00
1474bfe27d
Merge pull request #93653 from danieldk/mkl-2020.2.254
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mkl: 2020.1.217 -> 2020.2.254
2020-08-05 08:08:08 +02:00
7839270bb0
or-tools: 7.6 -> 7.7
2020-07-26 15:34:17 +02:00
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