Commit Graph

597 Commits

Author SHA1 Message Date
Josef Kemetmüller fbb273c5fe fenics: 2017.1.0 -> 2019.1.0
Fixes: NixOS/nixpkgs#75886
2020-03-19 21:48:27 -07:00
Timo Kaufmann d8d0b60c22
Merge pull request #82766 from r-ryantm/auto-update/brial
brial: 1.2.7 -> 1.2.8
2020-03-17 14:29:02 +00:00
R. RyanTM 707e0b1e96 brial: 1.2.7 -> 1.2.8 2020-03-17 01:13:50 +00:00
Tom Hall c6c753668d openblas: disable optimisation pending fix
See https://github.com/xianyi/OpenBLAS/issues/2496
2020-03-14 18:06:59 +00:00
wucke13 4f58c15ee6 petsc: 3.8.4 -> 3.12.4
+ add cxx flag to configure, because getdp needs it
2020-03-13 04:10:20 +00:00
Jan Tojnar b552b84ae2
suitesparse: ultimate clean-up
* Switch to default buildPhase & installPhase
* In preConfigure
	* Do not add -DNPARTITION to CHOLMOD_CONFIG. That would disable the use of Metis but we already have that.
	* Do not remove -lrt on Darwin, Darwin compiler can handle that and the code no longer exists anyway.
	* With CUDA enabled
		* Do not replace CUDA_ROOT. It does not exist any more. Instead we are setting CUDA_PATH in makeFlags.
		* Do not replace GPU_BLAS_PATH, it defaults to CUDA_PATH so it will end up with the same value.
		* Do not add -DCHOLMOD_OMP_NUM_THREADS to GPU_CONFIG. Why would be having the library use the same number of threads as the builder a good idea?
		* Do not replace CUDA_PATH, we are setting it in makeFlags now.
		* Do not replace CUDART_LIB and CUBLAS_LIB. They were being replaced incorrectly (cuda libs are located in lib directory, not lib64). Instead set the correct paths in makeFlags.
		* Do not replace CUDA_INC_PATH. Its default looks like it will end up with the same value.
		* Do not replace NV20, NV30, NV35 – not used any more.
		* Do not replace NVCC, defaults to the same.
		* Do not replace NVCCFLAGS, we just used the default from SourceSparse 4.4.7 with -gencode=arch=compute_60,code=compute_60 tacked on top. Current upstream default looks much better.
* Stop adding -DNTIMER to CFLAGS on Darwin – clock_gettime is supported by macOS 10.12 SDK.
* In buildPhase
	* Move the make arguments to makeFlags and library to buildFlags, allowing us to drop the manual make call. I did not verify all of these are still needed.
	* Remove the creation of libsuitesparse.so. As far as I could tell it is some kind of remnant of our old expression – perhaps due to past deficiencies of the build scripts, we created the individual libraries as symlinks to libsuitesparse.so: e36b3ec0a5 But since the build script can now build individual .so libraries, there should be no need for this abomination. No other distros do this either.
* In installPhase
	* No need to copy things manually, there is an install target. We just need to pass INSTALL=$out flag to make to let it know where to install the files.
	* I do not have means of verifying the darwin dylib name fix but it looks like it might be fixed in an upcoming release.
	* I dropped the rpath fixup as it does not seem to be needed any more (ldd does not report any unresolved libraries).
2020-03-11 03:45:25 +01:00
Jan Tojnar c16d5b6534
suitesparse: do not build Mongoose & GraphBLAS
We already have package for them
2020-03-11 02:33:06 +01:00
Jan Tojnar 306cf6091f
suitesparse: link against system metis 2020-03-10 21:16:28 +01:00
Jan Tojnar e9d7774b7b
suitesparse: 5.4.0 → 5.7.1 2020-03-10 21:16:27 +01:00
Jan Tojnar 559f02e208
suitesparse-graphblas: init at 3.1.2 2020-03-10 21:16:27 +01:00
Jan Tojnar b4e6293a8d
mongoose: init at 2.0.4 2020-03-10 20:35:44 +01:00
Jan Tojnar 40ae28791f
suitesparse: clean up
* Split to multiple outputs
* Fetch source from GitLab (the only source for future releases)
* Re-order attrset to be more idiomatic
* Format with nixpkgs-fmt
2020-03-10 20:35:44 +01:00
Josef Kemetmüller 1cc9b2501d suitesparse: Enable parallel building 2020-03-10 17:16:17 +01:00
Mario Rodas 99722af1d5
Merge pull request #81843 from OmnipotentEntity/cudnn-7.6.5
cudnn_cudatoolkit_10_2: init at 7.6.5
2020-03-10 07:19:50 -05:00
R. RyanTM e04fab644f osi: 0.108.4 -> 0.108.6 2020-03-06 07:22:33 +01:00
Michael Reilly 972db874b3 cudnn_cudatoolkit_10_2: init at 7.6.5 2020-03-05 15:14:10 -05:00
Frederik Rietdijk 9d88ee08f6 Merge master into staging-next 2020-02-18 16:09:19 +01:00
Dylan Simon e25f0b3e3d scalapack: 2.1 -> 2.1.0
2.1 seems to have disappeared
2020-02-17 18:31:13 -05:00
Frederik Rietdijk ec1184f461 Merge master into staging-next 2020-02-17 15:12:28 +01:00
Drew Risinger c71f63a337 ecos: 2.0.6 -> 2.0.7
Bump ecos module.
2020-02-16 19:12:52 -08:00
R. RyanTM 6222192872 openblas: 0.3.7 -> 0.3.8 2020-02-11 12:01:57 +00:00
Anders Kaseorg 1a32e383e6 or-tools: 7.3 -> 7.5
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
2020-02-10 20:40:12 +01:00
R. RyanTM 5659946d6a m4ri: 20200115 -> 20200125 2020-02-08 16:16:48 +00:00
Drew Risinger c13bf84d45 libraries.science.math.scs: 2.0.2 -> 2.1.1 2020-01-31 16:05:05 -05:00
Frederik Rietdijk dce0ca29d9 Merge master into staging-next 2020-01-28 10:46:13 +01:00
Timo Kaufmann e39e304638
Merge pull request #78496 from r-ryantm/auto-update/brial
brial: 1.2.6 -> 1.2.7
2020-01-26 23:28:02 +01:00
R. RyanTM 2d172e6403 brial: 1.2.6 -> 1.2.7 2020-01-26 02:39:07 +00:00
Timo Kaufmann d62e410ccd
Merge pull request #78222 from r-ryantm/auto-update/m4ri
m4ri: 20140914 -> 20200115
2020-01-22 17:43:44 +01:00
R. RyanTM 813678058f m4ri: 20140914 -> 20200115 2020-01-21 23:46:57 +00:00
R. RyanTM 3937313195 m4rie: 20150908 -> 20200115 2020-01-21 23:24:43 +00:00
Anders Kaseorg 3cd8ce3bce treewide: Fix unsafe concatenation of $LD_LIBRARY_PATH
Naive concatenation of $LD_LIBRARY_PATH can result in an empty
colon-delimited segment; this tells glibc to load libraries from the
current directory, which is definitely wrong, and may be a security
vulnerability if the current directory is untrusted.  (See #67234, for
example.)  Fix this throughout the tree.

Signed-off-by: Anders Kaseorg <andersk@mit.edu>
2020-01-15 09:47:03 +01:00
Niklas Hambüchen de1e61f34d
Merge pull request #77104 from r-ryantm/auto-update/htslib
htslib: 1.9 -> 1.10.2
2020-01-13 01:51:32 +01:00
Mario Rodas 5ab4676d88
Merge pull request #77194 from r-ryantm/auto-update/primesieve
primesieve: 7.4 -> 7.5
2020-01-09 05:02:21 -05:00
R. RyanTM e28fe589d9 primesieve: 7.4 -> 7.5 2020-01-07 00:22:48 -08:00
R. RyanTM 940d12bf5d htslib: 1.9 -> 1.10.2 2020-01-06 09:16:51 -08:00
Mario Rodas e11aab8340
Merge pull request #76356 from r-ryantm/auto-update/openlibm
openlibm: 0.6.0 -> 0.7.0
2020-01-06 09:58:54 -05:00
Frederik Rietdijk 17ab5f9d88 Merge master into staging-next 2020-01-06 10:38:20 +01:00
Ryan Mulligan f8cd096aad
Merge pull request #54967 from volhovm/volhovm/clmagma
clmagma: init at 1.3
2020-01-05 08:18:12 -08:00
Frederik Rietdijk 828f93a326 Merge master into staging-next 2020-01-05 16:00:21 +01:00
markuskowa 1c55261574
Merge pull request #75526 from robertodr/more-mkl
Add GNU threading and Fortran libraries to MKL package
2020-01-04 20:36:43 +01:00
Frederik Rietdijk 867552957f openblas: fix static musl build 2020-01-03 12:50:47 +01:00
Frederik Rietdijk 960c24a996
Merge pull request #75798 from tobim/pkgsStatic/arrow
arrow-cpp: add pkgsStatic support
2020-01-03 10:13:31 +01:00
Frederik Rietdijk f08e3e38d4 Merge master into staging-next 2020-01-02 21:41:13 +01:00
Tobias Mayer db5d3cdfe2 openblas: partially fix static build 2019-12-31 15:05:13 +01:00
Robin Gloster 313da176d3
treewide: NIX_*_FLAGS -> string 2019-12-31 00:16:46 +01:00
Robin Gloster 5f2b92e3ec
treewide: NIX_*_COMPILE -> string 2019-12-31 00:13:29 +01:00
Robin Gloster 2157dcd141
treewide: installFlags is a list 2019-12-30 13:22:43 +01:00
Merijn Broeren 133103d709
treewide: replace make/build/configure/patchFlags with nix lists 2019-12-30 12:58:11 +01:00
Linus Heckemann 2c19725202 mirtk: enable tbb support for multithreading 2019-12-30 01:16:08 +01:00
R. RyanTM a2a56df6f8 openlibm: 0.6.0 -> 0.7.0 2019-12-23 20:42:29 -08:00
Roberto Di Remigio 153597a320
mkl: filter static libs in installPhase 2019-12-19 10:23:26 +01:00
Roberto Di Remigio 6cc9bbe2fd
mkl: extract static libraries optionally 2019-12-19 10:12:00 +01:00
Roberto Di Remigio e0605b3174
mkl: add GNU threading and Fortran libraries
Signed-off-by: Roberto Di Remigio <roberto.diremigio@gmail.com>
2019-12-19 10:12:00 +01:00
Timo Kaufmann 135081a538 brial: 1.2.5 -> 1.2.6
Motivation is mostly https://github.com/BRiAl/BRiAl/pull/37, which is a
pre-requiste for getting the sage tests to pass with python3.
2019-12-13 20:31:31 +01:00
Mateusz Kowalczyk 1451a52a38 Remove myself (fuuzetsu) from maintainer lists
I haven't been doing any maintenance for a long time now and not only
do I get notified, it also creates a fake impression that all these
packages had at least one maintainer when in practice they had none.
2019-12-05 16:29:48 +09:00
Dmitry Kalinkin aa7efea848
Merge pull request #73958 from markuskowa/upd-lapack
liblapack: 3.8.0 -> 3.9.0
2019-11-24 20:06:04 -05:00
John Ericson d0d5136cce Merge remote-tracking branch 'upstream/master' into wrapper-pname-support 2019-11-24 17:25:07 +00:00
John Ericson 9b090ccbca treewide: Get rid of most `parseDrvName` without breaking compat
That is because this commit should be merged to both master and
release-19.09.
2019-11-24 17:22:28 +00:00
Markus Kowalewski 7e44c6dee6
liblapack: 3.8.0 -> 3.9.0 2019-11-24 11:47:50 +01:00
Markus Kowalewski 8419bb2a20
scalapack: 2.0.2 -> 2.1 2019-11-20 22:44:33 +01:00
Renaud 5411dbda33
Merge pull request #71710 from bcdarwin/fix-elastix
elastix: 4.9.0 -> 5.0.0 (and mark unbroken)
2019-11-18 23:23:16 +01:00
Ben Darwin b618730708 elastix: 4.9.0 -> 5.0.0 (and mark unbroken) 2019-11-18 13:29:02 -05:00
markuskowa 7d728faea5
Merge pull request #73227 from markuskowa/fix-mkl
mkl: add scalapack libraries to output
2019-11-18 10:46:33 +01:00
Markus Kowalewski d817a49faa
mkl: add scalapack libraries to output 2019-11-18 09:05:03 +01:00
Ben Darwin 736860d34b nifticlib and niftseg: change platform from linux to unix since these build on OSX 2019-11-14 21:25:10 -05:00
Andreas Rammhold 1e72fa5158
Merge pull request #68954 from dguibert/dg/cudatoolkit_10_1
cudatoolkit: add 10.1.243
2019-11-06 08:58:30 +01:00
Benjamin Hipple fa1e275f31 mkl: 2019.3 -> 2019.5 (#71476)
Includes bugfixes, new features, and performance improvements.

Full release notes here:
https://software.intel.com/en-us/articles/intel-math-kernel-library-release-notes-and-new-features

Leave Darwin on 2019.3 pending resolution of DMG issues
2019-10-27 15:34:16 -04:00
Sam Stites f12199614d magma: use cudatoolkit 2019-10-23 10:57:43 -07:00
markuskowa f6d7f8ae16
Merge pull request #68927 from danieldk/mkl
mkl: include pkgconfig files
2019-10-13 19:16:49 +02:00
Linus Heckemann 5aa4b19946 treewide: mark some broken packages as broken
Refs:
e6754980264fe927320d5ff2dbd24ca4fac9a160
1e9cc5b9844ef603fe160e9f671178f96200774f
793a2fe1e8bb886ca2096c5904e1193dc3268b6d
c19cf65261639f749012454932a532aa7c681e4b
f6544d618f30fae0bc4798c4387a8c7c9c047a7c
2019-10-08 17:14:26 +02:00
Orivej Desh 2455b2e309 or-tools: 7.0 -> 7.3 2019-10-04 05:17:48 +00:00
Nikolay Amiantov 1c429acbff tensorflow: add OpenGL path to find libcudart 2019-10-02 10:33:31 +03:00
Timo Kaufmann 7a7e9c1b27
Merge pull request #64193 from timokau/sage-8.9
sage: 8.8 -> 8.9
2019-09-30 11:13:46 +00:00
Joachim F ad773d31e2
Merge pull request #69345 from joachifm/feat/split-version
Replace uses of splitString for splitting version strings
2019-09-27 06:19:18 +00:00
Joachim Fasting bad07dfac5
tree-wide: replace uses of splitString "." with lib.versions
Quoting from the splitString docstring:

   NOTE: this function is not performant and should never be used.

This replaces trivial uses of splitString for splitting version
strings with the (potentially builtin) splitVersion.
2019-09-26 17:42:49 +02:00
Timo Kaufmann 1797c9c295 sage: 8.9.beta9 -> 8.9.rc0
Sage now by default expects the lcalc library to be named Lfunction
(instead of libLfunction). This could be changed by an environment
variable (https://trac.sagemath.org/ticket/28224), but various distros
seem to agree on this standard
(https://groups.google.com/forum/#!topic/sage-packaging/xvh55IxHTZg) so
it's best just to follow it. The old standard was set by sage anyway and
sage is the only consumer of lcalc in nixpkgs.
2019-09-24 17:51:09 +02:00
Matthieu Coudron d70eba7ab3 ns-3: 3.29 -> 3.30
Fixes python bindings.
2019-09-24 00:30:12 +09:00
Daniël de Kok 9f25e95576 mkl: include pkgconfig files 2019-09-22 20:07:34 +02:00
David Guibert 92690a8937 cuddn: add 10.1 (version 7.6.3) 2019-09-17 15:19:41 +02:00
Markus Kowalewski ecd20d2166
liblapack: remove optimized blas flag.
This cmake flag has no effect since no external blas
library is provided in the build inputs.
2019-09-15 11:39:58 +02:00
Markus Kowalewski fc7374176f
liblapack: build LAPACKE C api 2019-09-15 11:39:58 +02:00
Vladimír Čunát 991c0e1618
treewide: mark packages as buildable on darwin (PR #45364)
vcunat amended the commit a bit; see the PR for details/discussion.
2019-09-15 10:50:08 +02:00
Miguel Madrid Mencía 148c82e07e
maintainer: mimadrid: update github username and personal data 2019-09-14 12:15:46 +02:00
volth 7b8fb5c06c treewide: remove redundant quotes 2019-09-08 23:38:31 +00:00
Frederik Rietdijk 5f4734b1dd Merge remote-tracking branch 'upstream/gcc-8' into staging-next
Earlier the gcc8 branch was merged instead of the gcc-8 branch (note the dash)...
2019-09-08 20:44:26 +02:00
Frederik Rietdijk 66bc7fc1b3 Merge master into staging-next 2019-09-06 22:46:05 +02:00
tbenst 6d7282d74a magma: 2.0.2 -> 2.5.0 2019-09-06 20:15:10 +02:00
Vladimír Čunát 4aad2947f8
Merge branch 'master' into staging-next 2019-09-04 11:00:56 +02:00
Franz Pletz de85797565
Merge remote-tracking branch 'origin/master' into gcc-8 2019-09-03 22:15:07 +02:00
idontgetoutmuch 739cdb368e Ensure blas produces pkg config files (#67629)
blas: produce pkgconfig file
2019-09-03 16:34:45 +02:00
Mikhail Volkhov 58dffa3459
clmagma: init at 1.3 2019-08-30 22:40:04 +02:00
volth 08f68313a4 treewide: remove redundant rec 2019-08-28 11:07:32 +00:00
Frederik Rietdijk 5061fe0c2c Merge staging-next into staging 2019-08-28 08:26:42 +02:00
volth 35d68ef143 treewide: remove redundant quotes 2019-08-26 21:40:19 +00:00
Robin Gloster 616b8343c4
Merge remote-tracking branch 'upstream/master' into gcc-8 2019-08-25 18:55:46 +02:00
Vladimír Čunát 2e6bf42a22
Merge branch 'master' into staging-next
There ver very many conflicts, basically all due to
name -> pname+version.  Fortunately, almost everything was auto-resolved
by kdiff3, and for now I just fixed up a couple evaluation problems,
as verified by the tarball job.  There might be some fallback to these
conflicts, but I believe it should be minimal.

Hydra nixpkgs: ?compare=1538299
2019-08-24 08:55:37 +02:00
R. RyanTM 0ff0c288a8 sympow: 2.023.4 -> 2.023.5
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/sympow/versions
2019-08-20 21:06:37 -07:00
Markus Kowalewski 6ff8958bef openblas: 0.3.6 -> 0.3.7 2019-08-18 11:49:24 +02:00
volth c814d72b51 treewide: name -> pname 2019-08-17 10:54:38 +00:00
Frederik Rietdijk fe9a3e3e63 Merge staging-next into staging 2019-08-17 09:39:23 +02:00