Commit Graph

629 Commits

Author SHA1 Message Date
Matthew Bauer c85fc341b0 pytorch: update to use passthru's for checks
This makes the checks a little easier to understand - we can just
check it in the passthru. Also increase major check for cuda 11.
2020-09-10 14:23:15 -05:00
Ben Darwin 98512f3eaa nifticlib: 2.0.0 -> 3.0.1 2020-09-09 15:26:04 -04:00
Daniël de Kok 466522c919
Merge pull request #97137 from danieldk/blis-0.7.0
blis: init at 0.7.0
2020-09-08 14:55:39 +02:00
Benjamin Hipple 3c4335723c
Merge pull request #97019 from danieldk/mkl-2020.2
mkl: 2020.2.254 -> 2020.3.279
2020-09-07 13:28:27 -04:00
Jan Tojnar 87ec0fb5f3
Merge pull request #96982 from graham33/fix/96981_suitesparse_dylib_names
suitesparse: rename fixDarwinDylibNames override
2020-09-07 16:51:07 +02:00
Graham Bennett e10228defa suitesparse: remove custom fixDarwinDylibNames postInstall
This shadows the regular fixDarwinDylibNames function, which is a
nativeBuildInput, and prevents it from converting some relative paths to
absolute.  According to the comment this can be removed as of 5.7.2.
2020-09-06 19:57:21 +01:00
R. RyanTM bd9c787dfd openlibm: 0.7.0 -> 0.7.1 2020-09-05 09:19:39 +00:00
Daniël de Kok 863724b3f3 blis: init at 0.7.0 2020-09-04 18:44:01 +02:00
Daniël de Kok 405f49dc4a mkl: 2020.2.254 -> 2020.3.279
Release notes:

https://software.intel.com/content/www/us/en/develop/articles/intel-math-kernel-library-release-notes-and-new-features.html
2020-09-03 15:29:10 +02:00
Matthew Bauer 8e6f466967
Merge pull request #96563 from obsidiansystems/skip-cudnn_cnn_infer-instead-of-removing
cudnn: skip libcudnn_cnn_infer.so, instead of removing
2020-09-02 16:29:28 -05:00
R. RyanTM 5f28c07087 suitesparse-graphblas: 3.3.0 -> 3.3.3 2020-09-01 23:31:10 +02:00
Daniël de Kok 35e19d22c1 libtorch-bin: init at 1.6.0 2020-08-30 13:22:09 +02:00
Matthew Bauer ed950bb104 cudnn: skip libcudnn_cnn_infer.so, instead of removing
This is needed to build the CUDNN samples, so we should make sure it
winds up in $out/lib. The library is too big to support patchelf, so
we need to skip it. Most programs will still get the opengl path
because it also links to other libraries.
2020-08-28 15:16:15 -05:00
R. RyanTM 5af070fb0c petsc: 3.13.3 -> 3.13.4 2020-08-27 04:53:49 +00:00
Benjamin Hipple d41c129198
Merge pull request #95727 from obsidiansystems/cuda11
cudatoolkit: init v11.0.3
2020-08-26 15:09:08 -04:00
Frederik Rietdijk 0a874ff2a6 Merge master into staging-next 2020-08-24 11:50:58 +02:00
Daniël de Kok bebe5c963f
Merge pull request #95739 from danieldk/magma-2.5.3
magma: 2.5.0 -> 2.5.3
2020-08-23 10:58:21 +02:00
Jan Tojnar 91104b5417
Merge branch 'master' into staging-next 2020-08-23 02:00:50 +02:00
Silvan Mosberger 23962528ce
Merge pull request #93703 from taktoa/master
osqp: init at 0.6.0
2020-08-20 02:03:08 +02:00
Matthew Bauer abba9a2154 nccl: 2.4.8-1 -> 2.7.8-1 2020-08-19 13:34:56 -05:00
Matthew Bauer 164f8024e9 cudatoolkit: init v11.0.3 2020-08-19 13:34:52 -05:00
Daniël de Kok 147e24dcd6 magma: 2.5.0 -> 2.5.3
Other changes:

- Move gfortran and cmake to nativeBuildInputs.
- Magma now (only) generates dynamic libraries by default.
- Use ninja for faster builds.
2020-08-18 11:18:08 +02:00
Frederik Rietdijk d59c57f8a6
Merge pull request #92412 from matthewbauer/blas-cross
Blas/Lapack cross fixes
2020-08-15 08:55:57 +02:00
Daniël de Kok a49a59bc6c amd-libflame: init at 2.2
libflame is a protable library for dense matrix computations,
providing a complete LAPACK implementation. The AMD fork of libflame
is optimized for AMD CPUs.
2020-08-09 08:29:08 +02:00
Remy Goldschmidt c473490524
osqp: init at 0.6.0 2020-08-08 13:32:51 -07:00
Daniël de Kok 57d4c67fb8
Merge pull request #93052 from danieldk/amd-blis-zen-only
amd-blis: init at 2.2
2020-08-08 20:01:24 +02:00
R. RyanTM ca9c2e3548 petsc: 3.13.2 -> 3.13.3 2020-08-07 12:44:29 +10:00
Daniël de Kok 1474bfe27d
Merge pull request #93653 from danieldk/mkl-2020.2.254
mkl: 2020.1.217 -> 2020.2.254
2020-08-05 08:08:08 +02:00
Pavol Rusnak 7839270bb0
or-tools: 7.6 -> 7.7 2020-07-26 15:34:17 +02:00
Daniël de Kok 6a236f5410 mkl: 2020.1.217 -> 2020.2.254 2020-07-22 17:38:07 +02:00
markuskowa 533720caa9
Merge pull request #93031 from andrew-d/andrew/dsd
dsd: init at 2018-07-01
2020-07-18 23:18:23 +02:00
Jack Coughlin 8a65fe8da6 petsc: Fix install_name_tool patch
The PETSc library's config/install.py script checks whether
/usr/bin/install_name_tool is an existing file:

https://gitlab.com/petsc/petsc/-/blob/master/config/install.py#L368

Therefore, it is not enough to replace it with something that we expect
to be on the PATH, as this will cause the linked if statement to be
silently skipped. The consequence is that applications linked against
this version of petsc will fail at runtime on MacOS with a dynamic
loading error.

Instead, we should replace install_name_tool with the absolute path of a
binary we know will be present at build time.

Note that this should be fixed upstream as well, but this is sufficient
to fix the runtime error.
2020-07-18 08:47:24 -07:00
Andrew Dunham f856cb8a9e it++: init at 4.3.1 2020-07-16 17:59:24 -07:00
Daniël de Kok 4fbe92df09 amd-blis: init at 2.2
We compile specifically for Zen:

- Zen/Zen2 are not included in the x86_64 or amd64 configurations.
- Including them breaks AMD BLIS in other places, since some functions
  have Zen-specific definitions that fail on other platforms.

Non-Zen CI runners will succeed when they are Haswell or later, since
a Haswell kernel is compiled as a dependency.
2020-07-13 13:16:37 +02:00
Benjamin Hipple 2ec5479689
Merge pull request #89299 from wucke13/petsc
petsc: add fotran build argument
2020-07-07 13:50:29 -04:00
wucke13 dc5113fb06 petsc: 3.13.1 -> 3.13.2
+ add fortran build argument
2020-07-07 09:34:43 +02:00
Matthew Bauer 8a525d6a2b arpack: add blas, lapack to library path
Fixes #89215
2020-07-06 01:30:10 -04:00
R. RyanTM 669b2ab244 suitesparse-graphblas: 3.2.2 -> 3.3.0 2020-06-30 16:21:46 +00:00
R. RyanTM f79c05b113 openblas: 0.3.9 -> 0.3.10 2020-06-19 10:59:46 +02:00
Benjamin Hipple 4af635feff
Merge pull request #87866 from danieldk/validate-pkgconfig-hook
validatePkgConfig: init
2020-06-02 23:27:27 -04:00
Daniël de Kok 127cdd0cab mkl: use validatePkgConfig hook 2020-05-31 20:45:07 +02:00
Benjamin Hipple f04a5af0cc
Merge pull request #82180 from bcdarwin/bppcore
bppsuite: init at 2.4.1
2020-05-26 21:07:25 -04:00
Ben Darwin 7f656f3ef6 bpp-popgen: init at 2.4.1 2020-05-25 21:12:17 -04:00
Ben Darwin a53b27829c bpp-phyl: init at 2.4.1 2020-05-25 21:10:59 -04:00
Ben Darwin 8d712ccc16 bpp-seq: init at 2.4.1 2020-05-25 21:09:52 -04:00
Ben Darwin adc7b4c979 bpp-core: init at 2.4.1 2020-05-25 21:08:31 -04:00
Daniël de Kok e88673aa27 mkl: fix expectation of MKLROOT being set in pkg-config files
The Intel MKL pkg-config files did not work, because they expect that
the MKLROOT environment variable is set. This change replaces
occurences by the actual path of MKL in the Nix store.

Since the pkg-config files seem to break quite frequently after
upgrades, add a post-install check to validate the pkg-config files.
2020-05-14 19:40:18 +02:00
Timo Kaufmann 346de1fb8c
Merge pull request #87518 from r-ryantm/auto-update/sympow
sympow: 2.023.5 -> 2.023.6
2020-05-11 21:35:40 +00:00
R. RyanTM f66d997a29 sympow: 2.023.5 -> 2.023.6 2020-05-10 16:42:21 +00:00
Frederik Rietdijk 303adc7697 Merge master into staging-next 2020-05-10 09:43:48 +02:00