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34281 Commits

Author SHA1 Message Date
mimadrid baf65d5000
r-modules: fix Rsubread package 2017-01-06 21:07:25 +01:00
mimadrid 9ebab25442
r-modules: fix gmapR package 2017-01-06 21:07:25 +01:00
mimadrid 286e86f3a5
r-modules: fix oligo package 2017-01-06 21:07:25 +01:00
mimadrid afd1a4c933
r-modules: fix affyio package 2017-01-06 21:07:25 +01:00
mimadrid 4c0c3c7493
r-modules: fix BitSeq package 2017-01-06 21:07:24 +01:00
mimadrid 272b447ea7
r-modules: fix bamsignals package 2017-01-06 21:07:24 +01:00
mimadrid c5e4754ca7
r-modules: fix affyPLM package 2017-01-06 21:07:24 +01:00
mimadrid 1d7fd8f3c4
r-modules: fix xml2 package 2017-01-06 21:07:24 +01:00
mimadrid 5b813c2ab0
r-modules: fix XBRL package 2017-01-06 21:07:24 +01:00
mimadrid 512be9e14a
r-modules: fix WhopGenome package 2017-01-06 21:07:24 +01:00
mimadrid f9d84f8b65
r-modules: fix tkrplot package 2017-01-06 21:07:24 +01:00
mimadrid 0b3e62bb12
r-modules: fix tiff package 2017-01-06 21:07:23 +01:00
mimadrid 9420fa23c6
r-modules: fix TAQMNGR package 2017-01-06 21:07:23 +01:00
mimadrid 2303e63116
r-modules: fix spate package 2017-01-06 21:07:23 +01:00
mimadrid fcbed4b654
r-modules: fix showtext package 2017-01-06 21:07:23 +01:00
mimadrid 8a6b58d51d
r-modules: fix seqminer package 2017-01-06 21:07:23 +01:00
mimadrid e1a5eeef06
r-modules: fix seqinr package 2017-01-06 21:07:22 +01:00
mimadrid 1ef67b9e78
r-modules: fix RVowpalWabbit package 2017-01-06 21:05:54 +01:00
mimadrid ae2723a144
r-modules: fix rtiff package 2017-01-06 21:05:54 +01:00
mimadrid d7ac90dd0c
r-modules: fix rtfbs package 2017-01-06 21:05:53 +01:00
mimadrid fd175e4084
r-modules: fix Rssa package 2017-01-06 21:05:52 +01:00
mimadrid bd2aaada6e
r-modules: fix RSclient package 2017-01-06 21:05:52 +01:00
mimadrid 53235dbe14
r-modules: fix rphast package 2017-01-06 21:05:52 +01:00
mimadrid 780fb79e32
r-modules: fix Rmpfr package 2017-01-06 21:05:51 +01:00
mimadrid a58db75ccb
r-modules: fix rmatio package 2017-01-06 21:05:51 +01:00
mimadrid 674a2077dd
r-modules: fix rJava package 2017-01-06 21:05:51 +01:00
mimadrid 13a582688f
r-modules: fix RJaCGH package 2017-01-06 21:05:51 +01:00
mimadrid 9922867fa8
r-modules: fix Rhtslib package 2017-01-06 21:05:50 +01:00
mimadrid bb60f939ae
r-modules: fix Rhpc package 2017-01-06 21:05:50 +01:00
mimadrid e1bc505da9
r-modules: fix rggobi package 2017-01-06 21:05:50 +01:00
mimadrid 9f2b5e0425
r-modules: fix RGtk2 package 2017-01-06 21:05:50 +01:00
mimadrid 3342f8bd59
r-modules: fix RcppOctave package 2017-01-06 21:05:50 +01:00
mimadrid ba86a39645
r-modules: fix RcppCNPy package 2017-01-06 21:05:49 +01:00
mimadrid dd159d06b6
r-modules: fix rcdd package 2017-01-06 21:05:49 +01:00
mimadrid 8b229baf33
r-modules: fix rbamtools package 2017-01-06 21:05:49 +01:00
mimadrid 558f67e85f
r-modules: fix R2SWF package 2017-01-06 21:05:48 +01:00
mimadrid 277efe9896
r-modules: fix sysfonts package 2017-01-06 21:05:48 +01:00
mimadrid 062c9037d1
r-modules: fix PopGenome package 2017-01-06 21:05:48 +01:00
mimadrid c5ef08cc65
r-modules: fix PKI package 2017-01-06 21:05:48 +01:00
mimadrid 1e9071948f
r-modules: fix mwaved package 2017-01-06 21:05:48 +01:00
mimadrid 4e7de52c26
r-module: fix kza package 2017-01-06 21:05:47 +01:00
mimadrid debb12ce1a
r-module: fix jpeg package 2017-01-06 21:05:47 +01:00
mimadrid e3a2c97c7b
r-modules: fix gmp package 2017-01-06 21:05:47 +01:00
mimadrid 72eb6a8644
r-modules: fix fftwtools package 2017-01-06 21:05:47 +01:00
mimadrid 427c4d954a
r-modules: fix fftw package 2017-01-06 21:05:47 +01:00
mimadrid b88b8ea05b
r-modules: fix devEMF package 2017-01-06 21:05:47 +01:00
mimadrid 6c6aab3e5b
r-modules: fix cairoDevice package 2017-01-06 21:05:47 +01:00
mimadrid f717538866
r-modules: fix git2r package 2017-01-06 21:05:47 +01:00
mimadrid 88fcfafafe
r-modules: fix BayesXsrc package 2017-01-06 21:05:46 +01:00
mimadrid 6f9124e118
r-modules: fix Cairo package 2017-01-06 21:05:46 +01:00
c0bw3b 6d3183e7da
nghttp2: refactor (close #21029) 
Turning the dependencies unrelated to the base libnghttp2 into proper
options.  vcunat modified the commit slightly.
 2017-01-06 21:03:11 +01:00
Domen Kožar f3381f0be2
electron: 1.2.2 -> 1.4.13 2017-01-06 19:00:17 +01:00
Peter Simons fb2e0e1eaa Merge pull request #21718 from mimadrid/fix/r-modules 
r-modules: fix seewave package
 2017-01-06 16:59:31 +01:00
Shea Levy 7ee897a3b3 libuv: Tests fail when cross-compiling 2017-01-06 10:37:04 -05:00
Vladimír Čunát 07bf828bd9
Merge branch 'staging'; security /cc #21642 2017-01-06 16:32:47 +01:00
mimadrid 321d5a01b6
r-modules: fix seewave package 2017-01-06 16:31:30 +01:00
Vladimír Čunát cf1d3677d3
flex: bring back 2.6.1 as an option 
Some breakages after flex update aren't so easy to fix,
and I can't really afford to spend much time on it ATM.
 2017-01-06 16:17:46 +01:00
Shea Levy 3c2cbd3259 ghc-head: bump 2017-01-06 08:39:12 -05:00
Frederik Rietdijk 39bb4fe0ee Merge pull request #21689 from rzetterberg/godot-2.1.1-stable-init 
godot: init at 2.1.1-stable
 2017-01-06 12:43:35 +01:00
Richard Zetterberg 4799971895 godot: init at 2.1.1-stable 
Adds the [godot engine](https://godotengine.org/) at the latest stable
version.

Produced binary contains the tools and the engine itself.
 2017-01-06 12:07:19 +01:00
Peter Simons f8a1e87e07 git-annex: update to latest version 2017-01-06 11:01:54 +01:00
Peter Simons d2e344616c hackage-packages.nix: automatic Haskell package set update 
This update was generated by hackage2nix v2.0.4-7-g48fad11 from Hackage revision
c6ccb98171.
 2017-01-06 11:01:48 +01:00
Peter Simons 0761b0bc5b configuration-hackage2nix.yaml: don't follow LTS Haskell's version constraints on hledger-* 2017-01-06 11:01:13 +01:00
Peter Simons a0c197102e configuration-hackage2nix.yaml: keep aeson 1.0.x around for stack 2017-01-06 11:01:13 +01:00
William Casarin ac9b3d64ce configuration-hackage2nix.yaml: update jb55's packages 2017-01-06 11:01:13 +01:00
Michael Raskin efb6c30d10 Merge pull request #21656 from zimbatm/packer-0.12.1 
packer: 0.10.1 -> 0.12.1
 2017-01-05 17:54:55 +00:00
Franz Pletz 2102fa0d6d
smack: 3.4.1 -> 4.1.9, fixe CVE-2016-10027 
cc #21642
 2017-01-05 17:22:08 +01:00
nzupec 0b22e6254b libmemcached: update sha256 hash 2017-01-05 15:48:49 +01:00
Vladimír Čunát 5d3563f80c
treewide: more fixes of phases after bash 4.3 -> 4.4 
I'm surprised that the packages ever worked.
 2017-01-05 11:07:04 +01:00
Frederik Rietdijk 3b7193604f pythonPackages.pycrypto: dummy depending on pycryptodome, closes #21671 2017-01-05 11:01:07 +01:00
Domen Kožar 28c06567f8 haskellPackages.hakyll: fix build 2017-01-05 10:24:07 +01:00
Franz Pletz fe9373460c
pythonPackages.pycrypto: add patch to fix CVE-2013-7459 
cc #21642
 2017-01-05 06:40:43 +01:00
Vladimír Čunát fcdb6db041
fontconfig-ultimate: fixup after bash update 
I've got no idea why it was trying to override the phase list and in
such a way.  Still, it's slightly discomforting that the expansion
semantics was changed in bash.
 2017-01-05 01:58:46 +01:00
Vladimír Čunát ea7b252c9a
Merge branch 'master' into staging 2017-01-04 23:20:43 +01:00
Domen Kožar 05fe17ea3c libvncserver: enable libgcrypt 
This allows encrypted vnc sessions for remmina
 2017-01-04 22:27:44 +01:00
Franz Pletz 86a251ee2f
libbrotli: 20160120 -> 1.0 2017-01-04 21:19:52 +01:00
Frederik Rietdijk a3018650a3 Merge pull request #21643 from symphorien/python-tix 
Python tix module
 2017-01-04 20:51:33 +01:00
Symphorien Gibol a6e3d71361 python: support the tkinter.tix module 2017-01-04 19:39:33 +01:00
zimbatm 9e97c0b937 packer: 0.10.1 -> 0.12.1 2017-01-04 17:31:45 +00:00
Dhananjay Balan 6edb3793d3 ldns 1.6.17 -> 1.7.0 
Release notes: http://git.nlnetlabs.nl/ldns/tree/Changelog?id=release-1.7.0

Openssl-1.1.0 is used to enable offline DANE verification (Needed for the DANE-TA usage type)

```
configure: error: OpenSSL does not support offline DANE verification (Needed for the DANE-TA usage type).  Please upgrade OpenSSL to version >= 1.1.0 or rerun with --disable-dane-verify or --disable-dane-ta-usage
builder /nix/store/m6n021fbk5h4iywzi3n26j95ksps9mwc-ldns-1.7.0. failed with exit code 1
error: build /nix/store/m6n021fbk5h4iywzi3n26j95ksps9mwc-ldns-1.7.0. failed
drvof drvfor
```
 2017-01-04 17:44:47 +01:00
Symphorien Gibol 3f499d3fb9 tix: init at 8.4.1 2017-01-04 17:39:43 +01:00
Domen Kožar f10dfd692f haskellPackages.mysql: fix #19593 2017-01-04 16:41:42 +01:00
Symphorien Gibol 87ef971478 tk: add private headers to /include 
those are necessary to build some extensions like tix
 2017-01-04 15:49:27 +01:00
Maximilian Güntner e9ab1a614f
cpp-ipfs-api: 2016-11-09 -> 2017-01-04 
Signed-off-by: Maximilian Güntner <code@klandest.in>
 2017-01-04 13:15:53 +01:00
Nikolay Amiantov e17b483669 glslang, spirv-tools, vulkan-loader: add metainformation 2017-01-04 12:57:22 +03:00
Daiderd Jordan 27660cfdc0
Merge branch 'master' into staging 2017-01-04 01:42:26 +01:00
Nikolay Amiantov 40a9c37ff3 node-env: use upstream version 2017-01-04 02:52:38 +03:00
Graham Christensen 6b504f8b52 Merge pull request #21626 from NeQuissimus/gradle_3_3 
gradle: 3.2.1 -> 3.3
 2017-01-03 18:45:42 -05:00
Daiderd Jordan 3daa019125 Merge pull request #21551 from zauberpony/vultr-init 
vultr: init at 1.12.0
 2017-01-04 00:08:04 +01:00
Tim Steinbach 02efac3f9f
gradle: 3.2.1 -> 3.3 2017-01-03 17:38:01 -05:00
Domen Kožar 17b7eb22c3 haskellPackages.wai-app-file-cgi: fix #21498 2017-01-03 23:28:58 +01:00
Domen Kožar 663048f378 Revert "haskell: workaround for bug with dynamic libraries on darwin" 
This reverts commit 19e2e7290a.

See the correct fix in aa64994b48a29ea8d12323942f1743fa4133527a

General purpose solution will be once we implement
https://github.com/NixOS/nixpkgs/issues/21624
 2017-01-03 23:10:24 +01:00
Domen Kožar 4bba954e13 rocksdb: properly fix #21215 2017-01-03 23:10:24 +01:00
Domen Kožar 4ce88d8674 rocksdb: build without debug 2017-01-03 23:10:24 +01:00
Domen Kožar 8b6b0aea72 Revert "rocksdb-haskell: just compile rocksdb statically to fix #21215" 
This reverts commit 5e5df0fea2.
 2017-01-03 23:10:24 +01:00
Jörg Thalheim d05656a9ca rustNightlyBin: fix build hash 2017-01-03 18:21:19 +00:00
Michael Raskin efd2b279f3 sbcl_1_3_12: init at 1.3.12; reinstating the previous version for Maxima 2017-01-03 18:06:47 +01:00
Michael Raskin 95f3473e18 ecl_16_1_2: init at 16.1.2; reinstating for Maxima 2017-01-03 18:06:47 +01:00
Michael Raskin 7c29295deb gcl_2_6_13_pre: init at 2.6.13pre50. GCL hasn't had releases for a long time, but there are relatively regular prereleases 2017-01-03 18:06:46 +01:00
Daiderd Jordan 538d1b688a stdenv: bootstrap cmake and python on darwin 2017-01-03 18:01:47 +01:00