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Merge pull request #99128 from jbedo/delly

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delly: 0.8.2 -> 0.8.5
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Ryan Mulligan 2020-10-16 06:30:11 -07:00 committed by GitHub
commit f9728adae7
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GPG Key ID: 4AEE18F83AFDEB23
1 changed files with 4 additions and 13 deletions
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17
pkgs/applications/science/biology/delly/default.nix
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@ -1,25 +1,16 @@
{ stdenv, fetchpatch, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }: { stdenv, fetchpatch, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }:
let stdenv.mkDerivation rec {
htslibPatch = fetchpatch {
url = "https://github.com/dellytools/delly/commit/0e5c710b0c5ea790bb39699d4cbd49cf4fb86f14.diff";
sha256 = "09bz1qqvzhdzm99hf9zgrv80kq9jlr1m2mdvx96p2hk5lpnbdl7y";
excludes = [ "src/htslib" ];
};
in stdenv.mkDerivation rec {
pname = "delly"; pname = "delly";
version = "0.8.2"; version = "0.8.5";
src = fetchFromGitHub { src = fetchFromGitHub {
owner = "dellytools"; owner = "dellytools";
repo = pname; repo = pname;
rev = "v${version}"; rev = "v${version}";
sha256 = "14bkmixz7737xj192ww96s3a20zc7xs7r04db8avw3ggi3i1s1cs"; sha256 = "1af1y20hd8x2yvix0gjvx038w7chf4fiyr68ny5yvrx5b2gw0vbq";
}; };
patches = [ htslibPatch ];
buildInputs = [ zlib htslib bzip2 lzma ncurses boost ]; buildInputs = [ zlib htslib bzip2 lzma ncurses boost ];
EBROOTHTSLIB = htslib; EBROOTHTSLIB = htslib;
@ -34,7 +25,7 @@ in stdenv.mkDerivation rec {
meta = with stdenv.lib; { meta = with stdenv.lib; {
description = "Structural variant caller for mapped DNA sequenced data"; description = "Structural variant caller for mapped DNA sequenced data";
license = licenses.gpl3; license = licenses.bsd3;
maintainers = with maintainers; [ scalavision ]; maintainers = with maintainers; [ scalavision ];
platforms = platforms.linux; platforms = platforms.linux;
longDescription = '' longDescription = ''