Merge staging-next into staging

pkgs/development/python-modules/Rtree/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "Rtree";
-  version = "0.8.3";
+  version = "0.9.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0jc62jbcqqpjcwcly7l9zk25bg72mrxmjykpvfiscgln00qczfbc";
+    sha256 = "140j1vsbcj6sivq1b6pgkwm0czivx2x3d66mqq0d9ymg46njrzn9";
   };
 
   propagatedBuildInputs = [ libspatialindex ];

pkgs/development/python-modules/Wand/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "Wand";
-  version = "0.5.7";
+  version = "0.5.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0wvqzppflph3fkgkyv3k11ga28fv1g1bz8sbf227d7pql8c6ia8k";
+    sha256 = "0sjdlfhw1wdjqpmr72mckf2njy9xigx51shl510jhvl418cja2bd";
   };
 
   postPatch = ''

pkgs/development/python-modules/aioeventlet/default.nix

@@ -28,7 +28,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "aioeventlet implements the asyncio API (PEP 3156) on top of eventlet. It makes";
-    homepage = https://aioeventlet.readthedocs.org/;
+    homepage = "https://pypi.org/project/aioeventlet/";
     license = licenses.asl20;
   };
 

pkgs/development/python-modules/aioredis/default.nix

@@ -4,13 +4,13 @@
 
 buildPythonPackage rec {
   pname = "aioredis";
-  version = "1.3.0";
+  version = "1.3.1";
 
   disabled = isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "86da2748fb0652625a8346f413167f078ec72bdc76e217db7e605a059cd56e86";
+    sha256 = "0fi7jd5hlx8cnv1m97kv9hc4ih4l8v15wzkqwsp73is4n0qazy0m";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/apprise/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "apprise";
-  version = "0.8.1";
+  version = "0.8.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "7a26fa03c4b83f03f17e8f8fc0b94d5502a12dc2e39b48e93a0ab0fd93151a95";
+    sha256 = "0m0pddqrpfm526f0fyzzjpcp7hi3d6pj0bgk2vl004lkas4li1hw";
   };
 
   nativeBuildInputs = [ Babel ];

pkgs/development/python-modules/astropy-healpix/default.nix

@@ -8,13 +8,13 @@
 
 buildPythonPackage rec {
   pname = "astropy-healpix";
-  version = "0.4";
+  version = "0.5";
 
   doCheck = false; # tests require pytest-astropy
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8c9709ac923759c92eca6d2e623e734d0f417eed40ba835b77d99dec09e51aa2";
+    sha256 = "1bfdq33mj6mwk5fkc6n23f9bc9z8j7kmvql3zchz4h58jskmvqas";
   };
 
   propagatedBuildInputs = [ numpy astropy astropy-helpers ];

pkgs/development/python-modules/awkward1/default.nix

@@ -0,0 +1,37 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, cmake
+, numba
+, numpy
+, pytest
+, rapidjson
+}:
+
+buildPythonPackage rec {
+  pname = "awkward1";
+  version = "0.1.28";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "2269aca04c827549435e24f9976d27e904d02b74a30caa9a2a463225a8ba1609";
+  };
+
+  nativeBuildInputs = [ cmake ];
+  buildInputs = [ rapidjson ];
+  propagatedBuildInputs = [ numpy ];
+
+  dontUseCmakeConfigure = true;
+
+  checkInputs = [ pytest numba ];
+  checkPhase = ''
+    py.test
+  '';
+
+  meta = with lib; {
+    description = "Development of awkward 1.0, to replace scikit-hep/awkward-array in 2020";
+    homepage = "https://github.com/scikit-hep/awkward-1.0";
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ veprbl ];
+  };
+}

pkgs/development/python-modules/azure-mgmt-netapp/default.nix

@@ -5,13 +5,13 @@
 }:
 
 buildPythonPackage rec {
-  version = "0.6.0";
+  version = "0.7.0";
   pname = "azure-mgmt-netapp";
   disabled = isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "10ymvyj386z9bjdm2g1b5a4vfnn87ig2zm6xn2xddvbpy0jxnyfv";
+    sha256 = "0cf4pknb5y2yz4jqwg7xm626zkfx8i8hqcr3dkvq21lrx7fz96r3";
     extension = "zip";
   };
 

pkgs/development/python-modules/bcdoc/default.nix

@@ -15,7 +15,7 @@ buildPythonPackage rec {
   doCheck = false;
 
   meta = with stdenv.lib; {
-    homepage = https://github.com/botocore/bcdoc;
+    homepage = "https://github.com/boto/bcdoc";
     license = licenses.asl20;
     description = "ReST document generation tools for botocore";
   };

pkgs/development/python-modules/binwalk/default.nix

@@ -30,7 +30,7 @@ buildPythonPackage {
     ++ stdenv.lib.optional visualizationSupport pyqtgraph;
 
   meta = with stdenv.lib; {
-    homepage = "http://binwalk.org";
+    homepage = "https://github.com/ReFirmLabs/binwalk";
     description = "A tool for searching a given binary image for embedded files";
     maintainers = [ maintainers.koral ];
   };

pkgs/development/python-modules/boltztrap2/default.nix

@@ -37,7 +37,7 @@ buildPythonPackage rec {
   '';
 
   meta = with stdenv.lib; {
-    homepage = https://www.boltztrap.org/;
+    homepage = "http://www.boltztrap.org/";
     description = "Band-structure interpolator and transport coefficient calculator";
     license = licenses.gpl3;
     maintainers = [ maintainers.costrouc ];

pkgs/development/python-modules/bugz/default.nix

@@ -17,7 +17,7 @@ buildPythonPackage {
   doCheck = false;
 
   meta = with stdenv.lib; {
-    homepage = http://www.liquidx.net/pybugz/;
+    homepage = "https://github.com/williamh/pybugz";
     description = "Command line interface for Bugzilla";
     license = licenses.gpl2;
     maintainers = [ maintainers.costrouc ];

pkgs/development/python-modules/cheroot/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchPypi, buildPythonPackage, pythonAtLeast
+{ stdenv, fetchPypi, buildPythonPackage, pythonAtLeast, isPy3k
 , more-itertools, six, setuptools_scm, setuptools-scm-git-archive
 , pytest, pytestcov, portend, pytest-testmon, pytest-mock
 , backports_unittest-mock, pyopenssl, requests, trustme, requests-unixsocket
@@ -10,6 +10,8 @@ buildPythonPackage rec {
   pname = "cheroot";
   version = "8.2.1";
 
+  disabled = !isPy3k;
+
   src = fetchPypi {
     inherit pname version;
     sha256 = "5b525b3e4a755adf78070ab54c1821fb860d4255a9317dba2b88eb2df2441cff";

pkgs/development/python-modules/cmd2/default.nix

@@ -6,11 +6,11 @@
 }:
 buildPythonPackage rec {
   pname = "cmd2";
-  version = "0.9.20";
+  version = "0.9.21";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0id8247m05xi26xbzg7jj1gcmy91p77wpbbj74v5543z2aplk8qv";
+    sha256 = "0pxxxhcxf4wzxvlh6jvw30pzgk1nsciq1qfxilpa8idv06jzx048";
   };
 
   LC_ALL="en_US.UTF-8";

pkgs/development/python-modules/coilmq/default.nix

@@ -19,7 +19,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Simple, lightweight, and easily extensible STOMP message broker";
-    homepage = http://code.google.com/p/coilmq/;
+    homepage = "https://github.com/hozn/coilmq/";
     license = licenses.asl20;
   };
 }

pkgs/development/python-modules/consonance/default.nix

@@ -0,0 +1,29 @@
+{ buildPythonPackage, lib, fetchFromGitHub, pytest, dissononce, python-axolotl-curve25519
+, transitions, protobuf, nose
+}:
+
+buildPythonPackage rec {
+  pname = "consonance";
+  version = "0.1.3";
+
+  src = fetchFromGitHub {
+    owner = "tgalal";
+    repo = "consonance";
+    rev = version;
+    sha256 = "1ifs0fq6i41rdna1kszv5sf87qbqx1mn98ffyx4xhw4i9r2grrjv";
+  };
+
+  checkInputs = [ nose ];
+  checkPhase = ''
+    # skipping online test as it requires network with uplink
+    nosetests tests/test_handshakes_offline.py
+  '';
+
+  propagatedBuildInputs = [ dissononce python-axolotl-curve25519 transitions protobuf ];
+
+  meta = with lib; {
+    homepage = "https://pypi.org/project/consonance/";
+    license = licenses.gpl3;
+    description = "WhatsApp's handshake implementation using Noise Protocol";
+  };
+}

pkgs/development/python-modules/crccheck/default.nix

@@ -0,0 +1,23 @@
+{ stdenv, buildPythonPackage, fetchPypi
+, nose }:
+
+buildPythonPackage rec {
+  pname = "crccheck";
+  version = "0.6";
+
+  buildInputs = [ nose ];
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0ckymm6s5kw08i1j35fy2cfha1hyq94pq1kc66brb552qgjs91jn";
+    extension = "zip";
+  };
+
+  meta = with stdenv.lib; {
+    description = "Python library for CRCs and checksums";
+    homepage = "https://bitbucket.org/martin_scharrer/crccheck";
+    license = licenses.gpl3Plus;
+    maintainers = with maintainers; [ etu ];
+    platforms = platforms.linux;
+  };
+}

pkgs/development/python-modules/cssutils/default.nix

@@ -16,7 +16,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "A Python package to parse and build CSS";
-    homepage = http://code.google.com/p/cssutils/;
+    homepage = "http://cthedot.de/cssutils/";
     license = licenses.lgpl3Plus;
   };
 }

pkgs/development/python-modules/demjson/default.nix

@@ -12,7 +12,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Encoder/decoder and lint/validator for JSON (JavaScript Object Notation)";
-    homepage = http://deron.meranda.us/python/demjson/;
+    homepage = "https://github.com/dmeranda/demjson";
     license = licenses.lgpl3Plus;
     maintainers = with maintainers; [ bjornfor ];
     platforms = platforms.all;

pkgs/development/python-modules/diff-match-patch/default.nix

@@ -5,7 +5,7 @@ buildPythonPackage rec {
   version = "20181111";
 
   meta = {
-    homepage = https://code.google.com/p/google-diff-match-patch/;
+    homepage = "https://github.com/diff-match-patch-python/diff-match-patch";
     description = "Diff, Match and Patch libraries for Plain Text";
     license = lib.licenses.asl20;
   };

pkgs/development/python-modules/dill/default.nix

@@ -25,7 +25,7 @@ buildPythonPackage rec {
 
   meta = {
     description = "Serialize all of python (almost)";
-    homepage = http://www.cacr.caltech.edu/~mmckerns/dill.htm;
+    homepage = "https://github.com/uqfoundation/dill/";
     license = lib.licenses.bsd3;
   };
-}
+}

pkgs/development/python-modules/diskcache/default.nix

@@ -19,7 +19,7 @@ buildPythonPackage rec {
 
   meta = with lib; {
     description = "Disk and file backed persistent cache";
-    homepage = https://www.grantjenks.com/docs/diskcache/;
+    homepage = "http://www.grantjenks.com/docs/diskcache/";
     license = licenses.asl20;
     maintainers = [ maintainers.costrouc ];
   };

pkgs/development/python-modules/dissononce/default.nix

@@ -0,0 +1,26 @@
+{ buildPythonPackage, fetchFromGitHub, lib, pytest, cryptography, transitions }:
+
+buildPythonPackage rec {
+  pname = "dissononce";
+  version = "0.34.3";
+
+  src = fetchFromGitHub {
+    owner = "tgalal";
+    repo = "dissononce";
+    rev = version;
+    sha256 = "0hn64qfr0d5npmza6rjyxwwp12k2z2y1ma40zpl104ghac6g3mbs";
+  };
+
+  checkInputs = [ pytest ];
+  checkPhase = ''
+    HOME=$(mktemp -d) py.test tests/
+  '';
+
+  propagatedBuildInputs = [ cryptography transitions ];
+
+  meta = with lib; {
+    homepage = "https://pypi.org/project/dissononce/";
+    license = licenses.mit;
+    description = "A python implementation for Noise Protocol Framework";
+  };
+}

pkgs/development/python-modules/django_evolution/default.nix

@@ -19,7 +19,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "A database schema evolution tool for the Django web framework";
-    homepage = http://code.google.com/p/django-evolution/;
+    homepage = "https://github.com/beanbaginc/django-evolution";
     license = licenses.bsd0;
     broken = true;
   };

pkgs/development/python-modules/dpkt/default.nix

@@ -11,7 +11,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Fast, simple packet creation / parsing, with definitions for the basic TCP/IP protocols";
-    homepage = https://code.google.com/p/dpkt/;
+    homepage = "https://github.com/kbandla/dpkt";
     license = licenses.bsd3;
     maintainers = with maintainers; [ bjornfor ];
     platforms = platforms.all;

pkgs/development/python-modules/emcee/default.nix

@@ -14,7 +14,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Kick ass affine-invariant ensemble MCMC sampling";
-    homepage = http://dan.iel.fm/emcee;
+    homepage = "https://emcee.readthedocs.io/";
     license = licenses.mit;
   };
 }

pkgs/development/python-modules/extras/default.nix

@@ -16,8 +16,8 @@ buildPythonPackage rec {
   doCheck = false;
 
   meta = {
-    description = "A module provides basic functions for parsing mime-type names and matching them against a list of media-ranges";
-    homepage = https://code.google.com/p/mimeparse/;
+    description = "Useful extra bits for Python - things that should be in the standard library";
+    homepage = "https://github.com/testing-cabal/extras";
     license = lib.licenses.mit;
   };
-}
+}

pkgs/development/python-modules/fastparquet/default.nix

@@ -1,20 +1,15 @@
-{ lib, buildPythonPackage, fetchPypi, fetchpatch, numba, numpy, pandas,
-pytestrunner, thrift, pytest, python-snappy, lz4 }:
+{ lib, buildPythonPackage, fetchFromGitHub, numba, numpy, pandas, pytestrunner,
+thrift, pytest, python-snappy, lz4 }:
 
 buildPythonPackage rec {
   pname = "fastparquet";
-  version = "0.2.1";
+  version = "0.3.2";
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "183wdmhnhnlsd7908n3d2g4qnb49fcipqfshghwpbdwdzjpa0day";
-  };
-
-  # Fixes for recent pandas version
-  # See https://github.com/dask/fastparquet/pull/396
-  patches = fetchpatch {
-    url = https://github.com/dask/fastparquet/commit/31fb3115598d1ab62a5c8bf7923a27c16f861529.patch;
-    sha256 = "0r1ig4rydmy4j85dgb52qbsx6knxdwn4dn9h032fg3p6xqq0zlpm";
+  src = fetchFromGitHub {
+    owner = "dask";
+    repo = pname;
+    rev = version;
+    sha256 = "142kmyddaq6mvmca23abwns1csn8f3lk9c8mbxwxrg4wa1dh0lb4";
   };
 
   postPatch = ''
@@ -27,9 +22,6 @@ buildPythonPackage rec {
   propagatedBuildInputs = [ numba numpy pandas thrift ];
   checkInputs = [ pytest python-snappy lz4 ];
 
-  # test_data/ missing in PyPI tarball
-  doCheck = false;
-
   meta = with lib; {
     description = "A python implementation of the parquet format";
     homepage = https://github.com/dask/fastparquet;

pkgs/development/python-modules/feedparser/default.nix

@@ -16,7 +16,7 @@ buildPythonPackage rec {
   doCheck = false;
 
   meta = with stdenv.lib; {
-    homepage = http://code.google.com/p/feedparser/;
+    homepage = "https://github.com/kurtmckee/feedparser";
     description = "Universal feed parser";
     license = licenses.bsd2;
     maintainers = with maintainers; [ domenkozar ];

pkgs/development/python-modules/fiona/default.nix

@@ -47,7 +47,7 @@ buildPythonPackage rec {
 
   meta = with lib; {
     description = "OGR's neat, nimble, no-nonsense API for Python";
-    homepage = http://toblerity.org/fiona/;
+    homepage = "https://fiona.readthedocs.io/";
     license = licenses.bsd3;
     maintainers = with maintainers; [ knedlsepp ];
   };

pkgs/development/python-modules/flask-elastic/default.nix

@@ -17,6 +17,6 @@ buildPythonPackage rec {
     description = "Integrates official client for Elasticsearch into Flask";
     license = licenses.bsd3;
     maintainers = [ maintainers.mic92 ];
-    homepage = https://github.com/cepture/foppch/flask-elastic;
+    homepage = "https://github.com/marceltschoppch/flask-elastic";
   };
 }

pkgs/development/python-modules/flup/default.nix

@@ -15,7 +15,7 @@ buildPythonPackage rec {
   };
 
   meta = with stdenv.lib; {
-    homepage = "http://trac.saddi.com/flup";
+    homepage = "https://www.saddi.com/software/flup/";
     description = "FastCGI Python module set";
     license = licenses.bsd0;
   };

pkgs/development/python-modules/folium/default.nix

@@ -14,11 +14,11 @@
 
 buildPythonPackage rec {
   pname = "folium";
-  version = "0.10.0";
+  version = "0.10.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "18fzxijsgrb95r0a8anc9ba5ijyw3nlnv3rpavfbkqa5v878x84f";
+    sha256 = "0gcc267wxwxr57ry86pqpbiyfvl0g48hfvgy0f2mz9s58g87kgzd";
   };
 
   disabled = pythonOlder "3.5";

pkgs/development/python-modules/funcparserlib/default.nix

@@ -23,7 +23,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Recursive descent parsing library based on functional combinators";
-    homepage = https://code.google.com/p/funcparserlib/;
+    homepage = "https://github.com/vlasovskikh/funcparserlib";
     license = licenses.mit;
     platforms = platforms.unix;
   };

pkgs/development/python-modules/funcy/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "funcy";
-  version = "1.13";
+  version = "1.14";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1hxii7g4fn301vr8wg53jc1jkvbjlbaz1fbpgpn4362xcwzk73wi";
+    sha256 = "1i55c5kjvkb3y2jqfnlx3iirrd512mxjdhjpm1l2xya6nk1q9vkm";
   };
 
   # No tests

pkgs/development/python-modules/gateone/default.nix

@@ -25,7 +25,7 @@ buildPythonPackage {
   '';
 
   meta = with stdenv.lib; {
-    homepage = https://liftoffsoftware.com/;
+    homepage = "http://liftoffsoftware.com/";
     description = "GateOne is a web-based terminal emulator and SSH client";
     maintainers = with maintainers; [ tomberek ];
     license = licenses.gpl3;

pkgs/development/python-modules/gcovr/default.nix

@@ -2,19 +2,21 @@
 , buildPythonPackage
 , fetchPypi
 , jinja2
+, lxml
 }:
 
 buildPythonPackage rec {
   pname = "gcovr";
-  version = "4.1";
+  version = "4.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ca94c337f2d9a70db177ec4330534fad7b2b772beda625c1ec071fbcf1361e22";
+    sha256 = "0gyady7x3v3l9fm1zan0idaggqqcm31y7g5vxk7h05p5h7f39bjs";
   };
 
   propagatedBuildInputs = [
     jinja2
+    lxml
   ];
 
   # There are no unit tests in the pypi tarball. Most of the unit tests on the
@@ -22,6 +24,12 @@ buildPythonPackage rec {
   # See also: https://github.com/gcovr/gcovr/issues/206
   doCheck = false;
 
+  pythonImportsCheck = [
+    "gcovr"
+    "gcovr.workers"
+    "gcovr.configuration"
+  ];
+
   meta = with stdenv.lib; {
     description = "A Python script for summarizing gcov data";
     license = licenses.bsd0;

pkgs/development/python-modules/gdata/default.nix

@@ -8,7 +8,7 @@ buildPythonPackage rec {
   version = "2.0.18";
 
   src = fetchurl {
-    url = "https://gdata-python-client.googlecode.com/files/${pname}-${version}.tar.gz";
+    url = "https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/gdata-python-client/${pname}-${version}.tar.gz";
     sha256 = "1dpxl5hwyyqd71avpm5vkvw8fhlvf9liizmhrq9jphhrx0nx5rsn";
   };
 
@@ -16,7 +16,7 @@ buildPythonPackage rec {
   doCheck = false;
 
   meta = with stdenv.lib; {
-    homepage = https://code.google.com/p/gdata-python-client/;
+    homepage = "https://github.com/google/gdata-python-client";
     description = "Python client library for Google data APIs";
     license = licenses.asl20;
   };

pkgs/development/python-modules/geopandas/default.nix

@@ -29,7 +29,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Python geospatial data analysis framework";
-    homepage = https://geopandas.org;
+    homepage = "http://geopandas.org";
     license = licenses.bsd3;
     maintainers = with maintainers; [ knedlsepp ];
   };

pkgs/development/python-modules/google_apputils/default.nix

@@ -32,7 +32,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Google Application Utilities for Python";
-    homepage = http://code.google.com/p/google-apputils-python;
+    homepage = "https://github.com/google/google-apputils";
     license = licenses.asl20;
   };
 

pkgs/development/python-modules/google_cloud_speech/default.nix

@@ -19,7 +19,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Cloud Speech API enables integration of Google speech recognition into applications.";
-    homepage = "https://googlecloudplatform.github.io/google-cloud-python/latest/speech/";
+    homepage = "https://github.com/googleapis/google-cloud-python/tree/master/speech";
     license = licenses.asl20;
     maintainers = with maintainers; [ vanschelven ];
   };

pkgs/development/python-modules/hbmqtt/default.nix

@@ -14,6 +14,11 @@ buildPythonPackage rec {
 
   propagatedBuildInputs = [ transitions websockets passlib docopt pyyaml ];
 
+  postPatch = ''
+    # test tries to bind same port multiple times and fails
+    rm tests/test_client.py
+  '';
+
   checkInputs = [ nose ];
 
   checkPhase = ''

pkgs/development/python-modules/httplib2/default.nix

@@ -13,7 +13,7 @@ buildPythonPackage rec {
   doCheck = false;
 
   meta = with lib; {
-    homepage = http://code.google.com/p/httplib2;
+    homepage = "https://github.com/httplib2/httplib2";
     description = "A comprehensive HTTP client library";
     license = licenses.mit;
     maintainers = with maintainers; [ ];

pkgs/development/python-modules/hvac/default.nix

@@ -1,15 +1,15 @@
-{ lib, buildPythonPackage, fetchPypi, requests }:
+{ lib, buildPythonPackage, fetchPypi, requests, six }:
 
 buildPythonPackage rec {
   pname = "hvac";
-  version = "0.9.5";
+  version = "0.9.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8b98be5868132a591ae5a3ca4b415231d4eac22d3fd77dbd69c3b1081d9ea26d";
+    sha256 = "1v37jabp859691863mw8j06hqxsy16ndf804z2k5y5b0d167j9by";
   };
 
-  propagatedBuildInputs = [ requests ];
+  propagatedBuildInputs = [ requests six ];
 
   # Requires running a Vault server
   doCheck = false;

pkgs/development/python-modules/iniparse/default.nix

@@ -22,7 +22,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Accessing and Modifying INI files";
-    homepage = http://code.google.com/p/iniparse/;
+    homepage = "https://github.com/candlepin/python-iniparse";
     license = licenses.mit;
     maintainers = with maintainers; [ danbst ];
   };

pkgs/development/python-modules/ipaddr/default.nix

@@ -16,7 +16,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Google's IP address manipulation library";
-    homepage = http://code.google.com/p/ipaddr-py/;
+    homepage = "https://github.com/google/ipaddr-py";
     license = licenses.asl20;
   };
 

pkgs/development/python-modules/ipdb/default.nix

@@ -7,12 +7,12 @@
 
 buildPythonPackage rec {
   pname = "ipdb";
-  version = "0.12.2";
+  version = "0.12.3";
   disabled = isPyPy;  # setupterm: could not find terminfo database
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0mzfv2sa8qabqzh2vqgwhavb15gsmcgqn6i3jgq6b5q9i9wxsgs7";
+    sha256 = "1zbj7xjhkr44grfyv1hb7ff5n1218f9jjabgzica29vh7c74m6jx";
   };
 
   propagatedBuildInputs = [ ipython ];

pkgs/development/python-modules/jenkins-job-builder/default.nix

@@ -28,7 +28,7 @@ buildPythonPackage rec {
 
   meta = with lib; {
     description = "Jenkins Job Builder is a system for configuring Jenkins jobs using simple YAML files stored in Git";
-    homepage = "https://docs.openstack.org/infra/system-config/jjb.html";
+    homepage = "https://docs.openstack.org/infra/jenkins-job-builder/";
     license = licenses.asl20;
     maintainers = with maintainers; [ ];
   };

pkgs/development/python-modules/joblib/default.nix

@@ -30,7 +30,7 @@ buildPythonPackage rec {
 
   meta = {
     description = "Lightweight pipelining: using Python functions as pipeline jobs";
-    homepage = https://pythonhosted.org/joblib/;
+    homepage = "https://joblib.readthedocs.io/";
     license = lib.licenses.bsd3;
     maintainers = with lib.maintainers; [ costrouc ];
   };

pkgs/development/python-modules/jsonrpc-websocket/default.nix

@@ -1,5 +1,5 @@
 { stdenv, buildPythonPackage, fetchPypi
-, aiohttp, jsonrpc-base }:
+, aiohttp, jsonrpc-base, pep8 }:
 
 buildPythonPackage rec {
   pname = "jsonrpc-websocket";
@@ -10,6 +10,8 @@ buildPythonPackage rec {
     sha256 = "f1aaca95db795d6a9f7bba52ff83c7fd4139050d0df93ee3a5a448adcfa0c0ac";
   };
 
+  nativeBuildInputs = [ pep8 ];
+
   propagatedBuildInputs = [ aiohttp jsonrpc-base ];
 
   meta = with stdenv.lib; {

pkgs/development/python-modules/jupyter-repo2docker/default.nix

@@ -1,18 +1,14 @@
-{ stdenv
-, buildPythonPackage
-, fetchPypi
-, pkgs-docker
+{ stdenv, buildPythonPackage, fetchPypi, pythonAtLeast
 , docker
-, traitlets
-, python-json-logger
 , escapism
 , jinja2
-, ruamel_yaml
+, pkgs-docker
+, python-json-logger
 , pyyaml
-, pytest
-, wheel
-, pytestcov
-, pythonAtLeast
+, ruamel_yaml
+, semver
+, toml
+, traitlets
 }:
 
 buildPythonPackage rec {
@@ -25,12 +21,28 @@ buildPythonPackage rec {
     sha256 = "7965262913be6be60e64c8016f5f3d4bf93701f2787209215859d73b2adbc05a";
   };
 
-  checkInputs = [ pytest pyyaml wheel pytestcov ];
-  propagatedBuildInputs = [ pkgs-docker docker traitlets python-json-logger escapism jinja2 ruamel_yaml ];
+  propagatedBuildInputs = [
+    docker
+    escapism
+    jinja2
+    pkgs-docker
+    python-json-logger
+    ruamel_yaml
+    semver
+    toml
+    traitlets
+  ];
 
   # tests not packaged with pypi release
   doCheck = false;
 
+  pythonImportsCheck = [
+    "repo2docker"
+    "repo2docker.app"
+    "repo2docker.utils"
+    "repo2docker.contentproviders.base"
+  ];
+
   meta = with stdenv.lib; {
     homepage = https://repo2docker.readthedocs.io/en/latest/;
     description = "Repo2docker: Turn code repositories into Jupyter enabled Docker Images";

pkgs/development/python-modules/libarcus/default.nix

@@ -3,14 +3,14 @@
 
 buildPythonPackage rec {
   pname = "libarcus";
-  version = "4.3.0";
+  version = "4.4.0";
   format = "other";
 
   src = fetchFromGitHub {
     owner = "Ultimaker";
     repo = "libArcus";
     rev = version;
-    sha256 = "1x06daijxbrqj0dlxmi2zn7ap74zf6hih3krmkwhvarm2nr052g4";
+    sha256 = "16m7m6ak5fqw3djn4azwiamkizcc1dv7brv11kv99n3b43zzgn6d";
   };
 
   disabled = pythonOlder "3.4.0";
@@ -20,7 +20,7 @@ buildPythonPackage rec {
   buildInputs = [ protobuf ];
 
   postPatch = ''
-    sed -i 's#''${Python3_SITELIB}#${placeholder "out"}/${python.sitePackages}#' cmake/SIPMacros.cmake
+    sed -i 's#''${Python3_SITEARCH}#${placeholder "out"}/${python.sitePackages}#' cmake/SIPMacros.cmake
   '';
 
   meta = with stdenv.lib; {

pkgs/development/python-modules/libsavitar/default.nix

@@ -2,7 +2,7 @@
 
 buildPythonPackage rec {
   pname = "libsavitar";
-  version = "4.3.0";
+  version = "4.4.0";
   format = "other";
 
   src = fetchFromGitHub {

pkgs/development/python-modules/limnoria/default.nix

@@ -22,7 +22,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "A modified version of Supybot, an IRC bot";
-    homepage = http://supybot.fr.cr;
+    homepage = "https://github.com/ProgVal/Limnoria";
     license = licenses.bsd3;
     maintainers = with maintainers; [ goibhniu ];
   };

pkgs/development/python-modules/logutils/default.nix

@@ -14,7 +14,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Logging utilities";
-    homepage = http://code.google.com/p/logutils/;
+    homepage = "https://bitbucket.org/vinay.sajip/logutils/";
     license = licenses.bsd0;
   };
 

pkgs/development/python-modules/mox/default.nix

@@ -16,7 +16,7 @@ buildPythonPackage rec {
   doCheck = false;
 
   meta = with stdenv.lib; {
-    homepage = http://code.google.com/p/pymox/;
+    homepage = "https://pymox.readthedocs.io/";
     description = "A mock object framework for Python";
     license = licenses.asl20;
   };

pkgs/development/python-modules/mpi4py/default.nix

@@ -46,7 +46,7 @@ buildPythonPackage rec {
   meta = {
     description =
       "Python bindings for the Message Passing Interface standard";
-    homepage = http://code.google.com/p/mpi4py/;
+    homepage = "https://bitbucket.org/mpi4py/mpi4py/";
     license = stdenv.lib.licenses.bsd3;
   };
 }

pkgs/development/python-modules/mpmath/default.nix

@@ -16,7 +16,7 @@ buildPythonPackage rec {
   doCheck = false;
 
   meta = with stdenv.lib; {
-    homepage    = http://mpmath.googlecode.com;
+    homepage    = "http://mpmath.org/";
     description = "A pure-Python library for multiprecision floating arithmetic";
     license     = licenses.bsd3;
     maintainers = with maintainers; [ lovek323 ];

pkgs/development/python-modules/mps-youtube/default.nix

@@ -28,7 +28,7 @@ buildPythonPackage rec {
 
   meta = with lib; {
     description = "Terminal based YouTube player and downloader";
-    homepage = https://github.com/np1/mps-youtube;
+    homepage = "https://github.com/mps-youtube/mps-youtube";
     license = licenses.gpl3;
     maintainers = with maintainers; [ odi ];
   };

pkgs/development/python-modules/musicbrainzngs/default.nix

@@ -23,7 +23,7 @@ buildPythonPackage rec {
   '';
 
   meta = with stdenv.lib; {
-    homepage = http://alastair/python-musicbrainz-ngs;
+    homepage = "https://python-musicbrainzngs.readthedocs.org/";
     description = "Python bindings for musicbrainz NGS webservice";
     license = licenses.bsd2;
     maintainers = with maintainers; [ domenkozar ];

pkgs/development/python-modules/namebench/default.nix

@@ -12,7 +12,7 @@ buildPythonPackage rec {
   disabled = isPy3k || isPyPy;
 
   src = fetchurl {
-    url = "http://namebench.googlecode.com/files/${pname}-${version}-source.tgz";
+    url = "https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/{pname}/${pname}-${version}-source.tgz";
     sha256 = "09clbcd6wxgk4r6qw7hb78h818mvca7lijigy1mlq5y1f3lgkk1h";
   };
 
@@ -28,15 +28,14 @@ buildPythonPackage rec {
   '';
 
   meta = with stdenv.lib; {
-    homepage = http://namebench.googlecode.com/;
+    homepage = "https://github.com/google/namebench"; # Formerly https://code.google.com/archive/p/namebench/
     description = "Find fastest DNS servers available";
     license = with licenses; [
       asl20
       # third-party program licenses (embedded in the sources)
-      "LGPL" # Crystal_Clear
-      free # dns
-      asl20 # graphy
-      "BSD" # jinja2
+      lgpl21 # Crystal_Clear
+      isc # dns
+      bsd3 # jinja2
     ];
     longDescription = ''
       It hunts down the fastest DNS servers available for your computer to

pkgs/development/python-modules/nbdime/default.nix

@@ -24,12 +24,12 @@
 
 buildPythonPackage rec {
   pname = "nbdime";
-  version = "1.0.7";
+  version = "1.1.0";
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "28615cb92d59e0511026bac4c916f16dc15981bcad4ddc3f7fdd6a289ea01242";
+    sha256 = "0qfy7nmlg75vryvrlgd6p0rqrvcclq8n9kd0n4xv5959s9sjy0w0";
   };
 
   checkInputs = [

pkgs/development/python-modules/ncclient/default.nix

@@ -31,7 +31,7 @@ buildPythonPackage rec {
   doCheck = false;
 
   meta = with stdenv.lib; {
-    homepage = http://ncclient.org/;
+    homepage = "https://github.com/ncclient/ncclient";
     description = "Python library for NETCONF clients";
     license = licenses.asl20;
     maintainers = with maintainers; [ xnaveira ];

pkgs/development/python-modules/nidaqmx/default.nix

@@ -0,0 +1,55 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, six
+, numpy
+, pytestCheckHook
+, pykka
+, enum34
+, pythonOlder
+}:
+
+# Note we currently do not patch the path to the drivers
+# because those are not available in Nixpkgs.
+# https://github.com/NixOS/nixpkgs/pull/74980
+
+buildPythonPackage rec {
+  pname = "nidaqmx";
+  version = src.rev;
+
+  src = fetchFromGitHub {
+    owner = "ni";
+    repo = "nidaqmx-python";
+    rev = "0.5.7";
+    sha256 = "19m9p99qvdmvvqbwmqrqm6b50x7czgrj07gdsxbbgw04shf5bhrs";
+  };
+
+  propagatedBuildInputs = [
+    numpy
+    six
+  ] ++ lib.optionals (pythonOlder "3.4") [
+    enum34
+  ];
+
+  checkInputs = [
+    pytestCheckHook
+    pykka
+  ];
+
+  dontUseSetuptoolsCheck = true;
+
+  # Older pytest is needed
+  # https://github.com/ni/nidaqmx-python/issues/80
+  # Fixture "x_series_device" called directly. Fixtures are not meant to be called directly
+  doCheck = false;
+
+  pythonCheckImports = [
+    "nidaqmx.task"
+  ];
+
+  meta = {
+    description = "API for interacting with the NI-DAQmx driver";
+    license = [ lib.licenses.mit ];
+    maintainers = [ lib.maintainers.fridh ];
+  };
+}

pkgs/development/python-modules/numericalunits/default.nix

@@ -1,19 +1,19 @@
 { stdenv
 , buildPythonPackage
 , fetchPypi
+, isPy3k
 }:
 
 buildPythonPackage rec {
-  version = "1.23";
+  version = "1.24";
   pname = "numericalunits";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1q1jrzxx0k7j82c5q061hd10mp965ra8813vb09ji326fbxzn2gy";
+    sha256 = "0wn7kqp0rxqr6gnqhdn8pc0wy359krzan0kbika6hfvb0c1rw1hs";
   };
 
-  # no tests
-  doCheck = false;
+  disabled = !isPy3k;
 
   meta = with stdenv.lib; {
     homepage = http://pypi.python.org/pypi/numericalunits;

pkgs/development/python-modules/numpy/default.nix

@@ -66,7 +66,7 @@ in buildPythonPackage rec {
 
   meta = {
     description = "Scientific tools for Python";
-    homepage = http://numpy.scipy.org/;
+    homepage = https://numpy.org/;
     maintainers = with lib.maintainers; [ fridh ];
   };
 }

pkgs/development/python-modules/oauth/default.nix

@@ -16,7 +16,7 @@ buildPythonPackage rec {
   doCheck = false;
 
   meta = with stdenv.lib; {
-    homepage = http://code.google.com/p/oauth;
+    homepage = https://code.google.com/archive/p/oauth/;
     description = "Library for OAuth version 1.0a";
     license = licenses.mit;
   };

pkgs/development/python-modules/opt-einsum/2.nix

@@ -23,7 +23,7 @@ buildPythonPackage rec {
 
   meta = {
     description = "Optimizing NumPy's einsum function with order optimization and GPU support.";
-    homepage = http://optimized-einsum.readthedocs.io;
+    homepage = "https://optimized-einsum.readthedocs.io";
     license = lib.licenses.mit;
     maintainers = with lib.maintainers; [ teh ];
   };

pkgs/development/python-modules/opt-einsum/default.nix

@@ -19,7 +19,7 @@ buildPythonPackage rec {
 
   meta = with lib; {
     description = "Optimizing NumPy's einsum function with order optimization and GPU support.";
-    homepage = http://optimized-einsum.readthedocs.io;
+    homepage = https://github.com/dgasmith/opt_einsum;
     license = licenses.mit;
     maintainers = with maintainers; [ teh ];
   };

pkgs/development/python-modules/ovh/default.nix

@@ -17,8 +17,8 @@ buildPythonPackage rec {
 
   meta = {
     description = "Thin wrapper around OVH's APIs";
-    homepage = http://api.ovh.com/;
+    homepage = https://github.com/ovh/python-ovh;
     license = lib.licenses.bsd2;
     maintainers = [ lib.maintainers.makefu ];
   };
-}
+}

pkgs/development/python-modules/pafy/default.nix

@@ -15,7 +15,7 @@ buildPythonPackage rec {
 
   meta = with lib; {
     description = "A library to download YouTube content and retrieve metadata";
-    homepage = http://np1.github.io/pafy/;
+    homepage = https://github.com/mps-youtube/pafy;
     license = licenses.lgpl3Plus;
     maintainers = with maintainers; [ odi ];
   };

pkgs/development/python-modules/pandas/2.nix

@@ -113,7 +113,7 @@ in buildPythonPackage rec {
     # https://github.com/pandas-dev/pandas/issues/14866
     # pandas devs are no longer testing i686 so safer to assume it's broken
     broken = stdenv.isi686;
-    homepage = http://pandas.pydata.org/;
+    homepage = "https://pandas.pydata.org/";
     description = "Python Data Analysis Library";
     license = stdenv.lib.licenses.bsd3;
     maintainers = with stdenv.lib.maintainers; [ raskin knedlsepp ];

pkgs/development/python-modules/pandas/default.nix

@@ -111,7 +111,7 @@ in buildPythonPackage rec {
     # https://github.com/pandas-dev/pandas/issues/14866
     # pandas devs are no longer testing i686 so safer to assume it's broken
     broken = stdenv.isi686;
-    homepage = http://pandas.pydata.org/;
+    homepage = https://pandas.pydata.org/;
     description = "Python Data Analysis Library";
     license = stdenv.lib.licenses.bsd3;
     maintainers = with stdenv.lib.maintainers; [ raskin fridh knedlsepp ];

pkgs/development/python-modules/panel/default.nix

@@ -32,7 +32,7 @@ buildPythonPackage rec {
 
   meta = with lib; {
     description = "A high level dashboarding library for python visualization libraries";
-    homepage = http://pyviz.org;
+    homepage = https://pyviz.org;
     license = licenses.bsd3;
     maintainers = [ maintainers.costrouc ];
   };

pkgs/development/python-modules/periodictable/default.nix

@@ -2,13 +2,13 @@
 
 buildPythonPackage rec{
   pname = "periodictable";
-  version = "1.5.1";
+  version = "1.5.2";
 
   propagatedBuildInputs = [numpy pyparsing];
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0qd7rjhlnb2xxi7rhpidh9pabg2m4rq6zhdcsyiymni8mgjm8dfg";
+    sha256 = "1lx03xirh3hcrzkwrz91dmdzcj01bykq59hccd83ai901jzqmshz";
   };
 
   meta = {

pkgs/development/python-modules/pgspecial/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "pgspecial";
-  version = "1.11.7";
+  version = "1.11.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0wy1zmd44y0vl0kxx2y53g6lpipmixbwwrg6c2r7rc3nwa0icl7p";
+    sha256 = "8c53fa2b2490fa9ec34ede4eafff8ddbe8bce5cba3dcae96509be36ec8c75575";
   };
 
   checkInputs = [ pytest ];

pkgs/development/python-modules/phonenumbers/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "phonenumbers";
-  version = "8.10.23";
+  version = "8.11.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b31916281b0819c1e24ee3c21561ecd8be5af9381088557a986af85051a243bf";
+    sha256 = "1gc38v26hp638vnx4hmyv2gfyjs8k8lbvnlxfixgm60v4v7wykln";
   };
 
   meta = {

pkgs/development/python-modules/polyline/default.nix

@@ -0,0 +1,31 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, six
+, flake8
+, nose
+}:
+
+buildPythonPackage rec {
+  pname = "polyline";
+  version = "1.4.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0x60lm3ccq9zrcqlzyk041xgr1mi0k9lzyyv3cbbdiq9kb88jzvw";
+  };
+
+  propagatedBuildInputs = [ six ];
+  checkInputs = [ flake8 nose ];
+  checkPhase = ''
+    nosetests
+  '';
+
+  meta = with lib; {
+    homepage = https://github.com/hicsail/polyline;
+    license = licenses.mit;
+    description = "Python implementation of Google's Encoded Polyline Algorithm Format.";
+    longDescription = "polyline is a Python implementation of Google's Encoded Polyline Algorithm Format (http://goo.gl/PvXf8Y). It is essentially a port of https://github.com/mapbox/polyline built with Python 2 and 3 support in mind.";
+    maintainers = with maintainers; [ ersin ];
+  };
+}

pkgs/development/python-modules/pomegranate/default.nix

@@ -2,13 +2,13 @@
 
 buildPythonPackage rec {
   pname = "pomegranate";
-  version = "0.11.1";
+  version = "0.11.2";
 
   src = fetchFromGitHub {
     repo = pname;
     owner = "jmschrei";
     rev = "v${version}";
-    sha256 = "19kdzqyj86aldsls68a6ymrs8sasv3a8r4wjmfdmcif1xsg6zb4q";
+    sha256 = "070ciwww1lhjmfwd5n1kcwgxwbgdfvmhjs4l156bnf08z9dlrafl";
   };
 
   propagatedBuildInputs = [ numpy scipy cython networkx joblib pyyaml ];

pkgs/development/python-modules/progressbar2/default.nix

@@ -23,11 +23,6 @@ buildPythonPackage rec {
     sha256 = "7538d02045a1fd3aa2b2834bfda463da8755bd3ff050edc6c5ddff3bc616215f";
   };
 
-  postPatch = ''
-    rm -r tests/__pycache__
-    rm tests/*.pyc
-  '';
-
   propagatedBuildInputs = [ python-utils ];
   nativeBuildInputs = [ pytestrunner ];
   checkInputs = [

pkgs/development/python-modules/pyftdi/default.nix

@@ -8,12 +8,12 @@
 
 buildPythonPackage rec {
   pname = "pyftdi";
-  version = "0.30.3";
+  version = "0.42.2";
   disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ed55f0cb2d2f84b6e97be9583d582480ba9777cb0179aac0bb0ac480cd6760f5";
+    sha256 = "1bpb2rq7bc3p4g9qrfp4a7qcic79cvv1wh17j231bnpmy48njhvj";
   };
 
   propagatedBuildInputs = [ pyusb pyserial ];

pkgs/development/python-modules/pymupdf/default.nix

@@ -1,11 +1,11 @@
 { stdenv, buildPythonPackage, fetchPypi, mupdf, swig }:
 buildPythonPackage rec {
   pname = "PyMuPDF";
-  version = "1.16.8";
+  version = "1.16.9";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3099b48a796885c0760d8ac5439131dee1bc6adadf7ae008417e0ca8d8fcdf15";
+    sha256 = "09h960ns42bbrv10bg99fad193yvg64snhw8x7d78wg3qqvnnicc";
   };
 
   patchPhase = ''

pkgs/development/python-modules/pyserial-asyncio/default.nix

@@ -0,0 +1,24 @@
+{ stdenv, buildPythonPackage, fetchPypi, isPy3k
+, pyserial }:
+
+buildPythonPackage rec {
+  pname = "pyserial-asyncio";
+  version = "0.4";
+
+  disabled = !isPy3k; # Doesn't support python older than 3.4
+
+  buildInputs = [ pyserial ];
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1vlsb0d03krxlj7vpvyhpinnyxyy8s3lk5rs8ba2932dhyl7f1n4";
+  };
+
+  meta = with stdenv.lib; {
+    description = "asyncio extension package for pyserial";
+    homepage = "https://github.com/pyserial/pyserial-asyncio";
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ etu ];
+    platforms = platforms.linux;
+  };
+}

pkgs/development/python-modules/python_mimeparse/default.nix

@@ -17,7 +17,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "A module provides basic functions for parsing mime-type names and matching them against a list of media-ranges";
-    homepage = https://code.google.com/p/mimeparse/;
+    homepage = "https://github.com/dbtsai/python-mimeparse";
     license = licenses.mit;
   };
 

pkgs/development/python-modules/pythondialog/default.nix

@@ -6,12 +6,12 @@
 
 buildPythonPackage rec {
   pname = "pythondialog";
-  version = "3.4.0";
+  version = "3.5.0";
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1728ghsran47jczn9bhlnkvk5bvqmmbihabgif5h705b84r1272c";
+    sha256 = "11ydvllwll23qmcd3saachcxzn1dj5if3kc36p37ncf06xc5c0m4";
   };
 
   patchPhase = ''

pkgs/development/python-modules/pythonirclib/default.nix

@@ -27,7 +27,7 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Python IRC library";
-    homepage = https://bitbucket.org/jaraco/irc;
+    homepage = "https://github.com/jaraco/irc";
     license = with licenses; [ lgpl21 ];
   };
 

pkgs/development/python-modules/pywebkitgtk/default.nix

@@ -1,27 +0,0 @@
-{ stdenv
-, buildPythonPackage
-, fetchurl
-, pkgs
-, pygtk
-}:
-
-buildPythonPackage rec {
-  pname = "pywebkitgtk";
-  version = "1.1.8";
-  format = "other";
-
-  src = fetchurl {
-    url = "http://pywebkitgtk.googlecode.com/files/${pname}-${version}.tar.bz2";
-    sha256 = "1svlwyl61rvbqbcbalkg6pbf38yjyv7qkq9sx4x35yk69lscaac2";
-  };
-
-  nativeBuildInputs = [ pkgs.pkgconfig ];
-  buildInputs = [ pygtk pkgs.gtk2 pkgs.libxml2 pkgs.libxslt pkgs.libsoup pkgs.webkitgtk24x-gtk2 pkgs.icu ];
-
-  meta = with stdenv.lib; {
-    homepage = "https://code.google.com/p/pywebkitgtk/";
-    description = "Python bindings for the WebKit GTK port";
-    license = licenses.lgpl2Plus;
-  };
-
-}

pkgs/development/python-modules/reproject/default.nix

@@ -6,26 +6,37 @@
 , astropy-healpix
 , astropy-helpers
 , scipy
+, pytest
+, pytest-astropy
+, cython
 }:
 
 buildPythonPackage rec {
   pname = "reproject";
-  version = "0.5.1";
-
-  doCheck = false; # tests require pytest-astropy
+  version = "0.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "069rha55cbm8vsi1qf8zydds42lgkcc97sd57hmjw1mgiz025xrp";
+    sha256 = "484fde86d70d972d703038f138d7c2966ddf51171a6e79bd84e82ea270e27af3";
   };
 
   propagatedBuildInputs = [ numpy astropy astropy-healpix astropy-helpers scipy ];
 
+  nativeBuildInputs = [ astropy-helpers cython ];
+
   # Disable automatic update of the astropy-helper module
   postPatch = ''
     substituteInPlace setup.cfg --replace "auto_use = True" "auto_use = False"
   '';
 
+  checkInputs = [ pytest pytest-astropy ];
+
+  # Tests must be run in the build directory
+  checkPhase = ''
+    cd build/lib*
+    pytest
+  '';
+
   meta = with lib; {
     description = "Reproject astronomical images";
     homepage = https://reproject.readthedocs.io;

pkgs/development/python-modules/sentry-sdk/default.nix

@@ -1,4 +1,22 @@
-{ stdenv, buildPythonPackage, fetchPypi, isPy3k, urllib3, certifi, django, flask, tornado, bottle, rq, falcon, celery, pyramid, sanic, aiohttp }:
+{ aiohttp
+, bottle
+, buildPythonPackage
+, celery
+, certifi
+, django
+, falcon
+, fetchPypi
+, flask
+, iana-etc
+, isPy3k
+, libredirect
+, pyramid
+, rq
+, sanic
+, stdenv
+, tornado
+, urllib3
+}:
 
 buildPythonPackage rec {
   pname = "sentry-sdk";
@@ -20,4 +38,14 @@ buildPythonPackage rec {
     license = licenses.bsd2;
     maintainers = with maintainers; [ gebner ];
   };
+
+  # The Sentry tests need access to `/etc/protocols` (the tests call
+  # `socket.getprotobyname('tcp')`, which reads from this file). Normally
+  # this path isn't available in the sandbox. Therefore, use libredirect
+  # to make on eavailable from `iana-etc`. This is a test-only operation.
+  preCheck = ''
+    export NIX_REDIRECTS=/etc/protocols=${iana-etc}/etc/protocols
+    export LD_PRELOAD=${libredirect}/lib/libredirect.so
+  '';
+  postCheck = "unset NIX_REDIRECTS LD_PRELOAD";
 }

pkgs/development/python-modules/shodan/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "shodan";
-  version = "1.19.1";
+  version = "1.20.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "76b8a3ba577a62799e3ea86410aea54e1f403ef6efbf681a3f38baa2bf4e1c58";
+    sha256 = "163fbz06xg4ncvmgsg85x2689zd1bvycc3506xqvcgh8xcz3izif";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/stups-cli-support/default.nix

@@ -0,0 +1,43 @@
+{ lib
+, fetchFromGitHub
+, buildPythonPackage
+, clickclick
+, dnspython
+, requests
+, pytest
+, pytestcov
+, isPy3k
+}:
+
+buildPythonPackage rec {
+  pname = "stups-cli-support";
+  version = "1.1.20";
+  disabled = !isPy3k;
+
+  src = fetchFromGitHub {
+    owner = "zalando-stups";
+    repo = "stups-cli-support";
+    rev = version;
+    sha256 = "1r6g29gd009p87m8a6wv4rzx7f0564zdv67qz5xys4wsgvc95bx0";
+  };
+
+  propagatedBuildInputs = [
+    clickclick
+    dnspython
+    requests
+  ];
+
+  preCheck = "export HOME=$TEMPDIR";
+
+  checkInputs = [
+    pytest
+    pytestcov
+  ];
+
+  meta = with lib; {
+    description = "Helper library for all STUPS command line tools.";
+    homepage = "https://github.com/zalando-stups/stups-cli-support";
+    license = licenses.asl20;
+    maintainers = [ maintainers.mschuwalow ];
+  };
+}

pkgs/development/python-modules/stups-tokens/default.nix

@@ -0,0 +1,39 @@
+{ lib
+, fetchFromGitHub
+, buildPythonPackage
+, requests
+, mock
+, pytest
+, pytestcov
+, isPy3k
+}:
+
+buildPythonPackage rec {
+  pname = "stups-tokens";
+  version = "1.1.19";
+  disabled = !isPy3k;
+
+  src = fetchFromGitHub {
+    owner = "zalando-stups";
+    repo = "python-tokens";
+    rev = version;
+    sha256 = "09z3l3xzdlwpivbi141gk1k0zd9m75mjwbdy81zc386rr9k8s0im";
+  };
+
+  propagatedBuildInputs = [
+    requests
+  ];
+
+  checkInputs = [
+    mock
+    pytest
+    pytestcov
+  ];
+
+  meta = with lib; {
+    description = "A Python library that keeps OAuth 2.0 service access tokens in memory for your usage.";
+    homepage = "https://github.com/zalando-stups/python-tokens";
+    license = licenses.asl20;
+    maintainers = [ maintainers.mschuwalow ];
+  };
+}

pkgs/development/python-modules/stups-zign/default.nix

@@ -0,0 +1,52 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, fetchpatch
+, stups-tokens
+, stups-cli-support
+, pytest
+, pytestcov
+, isPy3k
+}:
+
+buildPythonPackage rec {
+  pname = "stups-zign";
+  version = "1.2";
+  disabled = !isPy3k;
+
+  src = fetchFromGitHub {
+    owner = "zalando-stups";
+    repo = "zign";
+    rev = version;
+    sha256 = "1vk6pnprnd5lfx96hc2c1n7kwh99f260r730x4y2h7lamlv82fh4";
+  };
+
+  patches = [
+    # pytest 5 is currently unsupported. Fetch and apply a pr that resolves this.
+    (fetchpatch {
+      url = https://github.com/zalando-stups/zign/commit/50140720211e547b0e59f7ddb39a732f0cc73ad7.patch;
+      sha256 = "1zmyvg1z1asaqqsmxvsx0srvxd6gkgavppvg3dblxwhkml01awqk";
+    })
+  ];
+
+  propagatedBuildInputs = [
+    stups-tokens
+    stups-cli-support
+  ];
+
+  preCheck = "
+    export HOME=$TEMPDIR
+  ";
+
+  checkInputs = [
+    pytest
+    pytestcov
+  ];
+
+  meta = with lib; {
+    description = "OAuth2 token management command line utility.";
+    homepage = "https://github.com/zalando-stups/zign";
+    license = licenses.asl20;
+    maintainers = [ maintainers.mschuwalow ];
+  };
+}

pkgs/development/python-modules/tensorflow/default.nix

@@ -25,6 +25,8 @@
 , sse42Support ? builtins.elem (stdenv.hostPlatform.platform.gcc.arch or "default") ["westmere" "sandybridge" "ivybridge" "haswell" "broadwell" "skylake" "skylake-avx512"]
 , avx2Support  ? builtins.elem (stdenv.hostPlatform.platform.gcc.arch or "default") [                                     "haswell" "broadwell" "skylake" "skylake-avx512"]
 , fmaSupport   ? builtins.elem (stdenv.hostPlatform.platform.gcc.arch or "default") [                                     "haswell" "broadwell" "skylake" "skylake-avx512"]
+# Darwin deps
+, Foundation, Security
 }:
 
 assert cudaSupport -> nvidia_x11 != null
@@ -157,6 +159,9 @@ let
       cudatoolkit
       cudnn
       nvidia_x11
+    ] ++ lib.optionals stdenv.isDarwin [
+      Foundation
+      Security
     ];
 
     # arbitrarily set to the current latest bazel version, overly careful
@@ -326,7 +331,7 @@ let
       homepage = http://tensorflow.org;
       license = licenses.asl20;
       maintainers = with maintainers; [ jyp abbradar ];
-      platforms = platforms.linux;
+      platforms = with platforms; linux ++ darwin;
       # The py2 build fails due to some issue importing protobuf. Possibly related to the fix in
       # https://github.com/akesandgren/easybuild-easyblocks/commit/1f2e517ddfd1b00a342c6abb55aef3fd93671a2b
       broken = !(xlaSupport -> cudaSupport) || !isPy3k;

pkgs/development/python-modules/uranium/default.nix

@@ -2,7 +2,7 @@
 , pyqt5, numpy, scipy, shapely, libarcus, doxygen, gettext, pythonOlder }:
 
 buildPythonPackage rec {
-  version = "4.3.0";
+  version = "4.4.0";
   pname = "uranium";
   format = "other";
 
@@ -10,7 +10,7 @@ buildPythonPackage rec {
     owner = "Ultimaker";
     repo = "Uranium";
     rev = version;
-    sha256 = "13dk6hkwrzljp1dyb40cyfnfbnl7dvlqsm0ncnmxhwizxr31jb8c";
+    sha256 = "1hy7lhn48mfrmfx6mbqxzc6bfh9ndnvcwjlsb6a71mw62xg6w7c2";
   };
 
   disabled = pythonOlder "3.5.0";

pkgs/development/python-modules/yowsup/argparse-dependency.patch

@@ -1,13 +0,0 @@
-diff --git a/setup.py b/setup.py
-index 991e89c..7a96ccf 100755
---- a/setup.py
-+++ b/setup.py
-@@ -5,7 +5,7 @@ import yowsup
- import platform
- import sys
- 
--deps = ['python-dateutil', 'argparse', 'python-axolotl>=0.1.39', 'six==1.10']
-+deps = ['python-dateutil', 'python-axolotl>=0.1.39', 'six']
- 
- if sys.version_info < (2,7):
-     deps += ['importlib', "protobuf==3.4.0"]

pkgs/development/python-modules/yowsup/default.nix

@@ -1,10 +1,10 @@
 { buildPythonPackage, stdenv, fetchFromGitHub, six, python-axolotl, pytest
-, isPy3k
+, isPy3k, consonance, appdirs
 }:
 
 buildPythonPackage rec {
   pname = "yowsup";
-  version = "2.5.7";
+  version = "3.2.3";
 
   # The Python 2.x support of this package is incompatible with `six==1.11`:
   # https://github.com/tgalal/yowsup/issues/2416#issuecomment-365113486
@@ -14,7 +14,7 @@ buildPythonPackage rec {
     owner = "tgalal";
     repo = "yowsup";
     rev = "v${version}";
-    sha256 = "1p0hdj5x38v2cxjnhdnqcnp5g7la57mbi365m0z83wa01x2n73w6";
+    sha256 = "0wb8yl685nr1i3vx89hwan5m6a482x8g48f5ksvdlph538p720pm";
   };
 
   checkInputs = [ pytest ];
@@ -22,9 +22,9 @@ buildPythonPackage rec {
     HOME=$(mktemp -d) py.test yowsup
   '';
 
-  patches = [ ./argparse-dependency.patch ];
+  patches = [ ./dependency-fixes.patch ];
 
-  propagatedBuildInputs = [ six python-axolotl ];
+  propagatedBuildInputs = [ six python-axolotl consonance appdirs ];
 
   meta = with stdenv.lib; {
     homepage = "https://github.com/tgalal/yowsup";

pkgs/development/python-modules/yowsup/dependency-fixes.patch

@@ -0,0 +1,13 @@
+diff --git a/setup.py b/setup.py
+index e3871a7..930bd6a 100755
+--- a/setup.py
++++ b/setup.py
+@@ -5,7 +5,7 @@ import yowsup
+ import platform
+ import sys
+ 
+-deps = ['consonance==0.1.2', 'argparse', 'python-axolotl==0.2.2', 'six==1.10', 'appdirs', 'protobuf>=3.6.0']
++deps = ['consonance>=0.1', 'python-axolotl>=0.2', 'six>=1.10', 'appdirs', 'protobuf>=3.6.0']
+ 
+ if sys.version_info < (2, 7):
+     deps.append('importlib')

pkgs/development/python-modules/zha-quirks/default.nix

@@ -0,0 +1,24 @@
+{ stdenv, buildPythonPackage, fetchPypi
+, aiohttp, zigpy
+, pytest }:
+
+buildPythonPackage rec {
+  pname = "zha-quirks";
+  version = "0.0.28";
+
+  nativeBuildInputs = [ pytest ];
+  buildInputs = [ aiohttp zigpy ];
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "021z5f5dm74amxkqnz4s1690ydprciqg23jz3n4mpjlxyxbdfj73";
+  };
+
+  meta = with stdenv.lib; {
+    description = "ZHA Device Handlers are custom quirks implementations for Zigpy";
+    homepage = "https://github.com/dmulcahey/zha-device-handlers";
+    license = licenses.asl20;
+    maintainers = with maintainers; [ etu ];
+    platforms = platforms.linux;
+  };
+}

pkgs/development/python-modules/zigpy-deconz/default.nix

@@ -0,0 +1,25 @@
+{ stdenv, buildPythonPackage, fetchPypi
+, aiohttp, crccheck, pyserial, pyserial-asyncio, pycryptodome, zigpy
+, pytest }:
+
+buildPythonPackage rec {
+  pname = "zigpy-deconz";
+  version = "0.7.0";
+
+  nativeBuildInputs = [ pytest ];
+  buildInputs = [ aiohttp crccheck pycryptodome ];
+  propagatedBuildInputs = [ pyserial pyserial-asyncio zigpy ];
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "049k6lvgf6yjkinbbzm7gqrzqljk2ky9kfw8n53x8kjyfmfp71i2";
+  };
+
+  meta = with stdenv.lib; {
+    description = "Library which communicates with Deconz radios for zigpy";
+    homepage = "https://github.com/zigpy/zigpy-deconz";
+    license = licenses.gpl3Plus;
+    maintainers = with maintainers; [ etu ];
+    platforms = platforms.linux;
+  };
+}