Merge staging-next into staging

pkgs/development/python-modules/Flask-PyMongo/default.nix

@@ -8,18 +8,19 @@
 }:
 
 buildPythonPackage rec {
-  pname = "Flask-PyMongo";
-  version = "2.2.0";
+  pname = "flask-pymongo";
+  version = "2.3.0";
 
   src = fetchPypi {
-    inherit pname version;
-    sha256 = "112625c5d5b4e35aad301ef9e937b7275043d310d75bd76e2b2dd07147c8217a";
+    pname = "Flask-PyMongo";
+    inherit version;
+    sha256 = "051kwdk07y4xm4yawcjhn6bz8swxp9nanv7jj35mz2l0r0nv03k2";
   };
 
   checkInputs = [ pytest ];
 
   checkPhase = ''
-    py.test
+    pytest
   '';
 
   # Tests seem to hang

pkgs/development/python-modules/aiorpcx/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "aiorpcx";
-  version = "0.10.5";
+  version = "0.17.0";
 
   src = fetchPypi {
     inherit version;
     pname = "aiorpcX";
-    sha256 = "0c4kan020s09ap5qai7p1syxjz2wk6g9ydhxj6fc35s4103x7b91";
+    sha256 = "14np5r75rs0v45vsv20vbzmnv3qisvm9mdllj1j9s1633cvcik0k";
   };
 
   propagatedBuildInputs = [ attrs ];

pkgs/development/python-modules/ansible-runner/default.nix

@@ -13,11 +13,11 @@
 
 buildPythonPackage rec {
   pname = "ansible-runner";
-  version = "1.3.3";
+  version = "1.3.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2a2b83e63b830de3ff01c2992342cfe09f96e410953c85904ee7e301b21fa513";
+    sha256 = "087jk00kv0qsqqspyn015nicvbl627wck3fgx2qhqawvrgqk3xb0";
   };
 
   checkInputs = [ pytest mock ];

pkgs/development/python-modules/asgiref/default.nix

@@ -1,6 +1,6 @@
 { stdenv, buildPythonPackage, pythonOlder, fetchFromGitHub, async-timeout, pytest, pytest-asyncio }:
 buildPythonPackage rec {
-  version = "2.3.2";
+  version = "3.1.2";
   pname = "asgiref";
 
   disabled = pythonOlder "3.5";
@@ -10,7 +10,7 @@ buildPythonPackage rec {
     owner = "django";
     repo = pname;
     rev = version;
-    sha256 = "1ljymmcscyp3bz33kjbhf99k04fbama87vg4069gbgj6lnxjpzav";
+    sha256 = "1y32ys1q07nyri0b053mx24qvkw305iwvqvqgi2fdhx0va8d7qfy";
   };
 
   propagatedBuildInputs = [ async-timeout ];

pkgs/development/python-modules/av/default.nix

@@ -1,7 +1,6 @@
 { lib
 , buildPythonPackage
 , fetchPypi
-, nose
 , numpy
 , ffmpeg_4
 , libav
@@ -10,14 +9,14 @@
 
 buildPythonPackage rec {
   pname = "av";
-  version = "6.1.2";
+  version = "6.2.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "eebbb56eeae650b1fc551f94d51aee39b487bf4df73c39daea186c5d2950650f";
+    sha256 = "1wm33qajxcpl9rn7zfb2pwwqn87idb7ic7h5zwy2hgbpjnh3vc2g";
   };
 
-  checkInputs = [ nose numpy ];
+  checkInputs = [ numpy ];
 
   nativeBuildInputs = [ pkgconfig ];
   buildInputs = [ ffmpeg_4 ];

pkgs/development/python-modules/aws-sam-translator/default.nix

@@ -1,7 +1,7 @@
 { lib
 , buildPythonPackage
 , fetchPypi
-, isPy3k
+, pythonOlder
 , boto3
 , enum34
 , jsonschema
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "aws-sam-translator";
-  version = "1.10.0";
+  version = "1.11.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0axr4598b1h9kyb5mv104cpn5q667s0g1wkkbqzj66vrqsaa07qf";
+    sha256 = "db872c43bdfbbae9fc8c9201e6a7aeb9a661cda116a94708ab0577b46a38b962";
   };
 
   # Tests are not included in the PyPI package
@@ -22,10 +22,9 @@ buildPythonPackage rec {
 
   propagatedBuildInputs = [
     boto3
-    enum34
     jsonschema
     six
-  ];
+  ] ++ lib.optionals (pythonOlder "3.4") [ enum34 ];
 
   meta = {
     homepage = https://github.com/awslabs/serverless-application-model;

pkgs/development/python-modules/cartopy/default.nix

@@ -1,8 +1,9 @@
 { buildPythonPackage, lib, fetchPypi
 , pytest, filelock, mock, pep8
-, cython, isPy37, glibcLocales
+, cython, isPy27, isPy37, glibcLocales
 , six, pyshp, shapely, geos, proj, numpy
 , gdal, pillow, matplotlib, pyepsg, pykdtree, scipy, owslib, fiona
+, xvfb_run
 }:
 
 buildPythonPackage rec {
@@ -17,10 +18,14 @@ buildPythonPackage rec {
 
   checkInputs = [ filelock mock pytest pep8 ];
 
-  # several tests require network connectivity: we disable them
-  checkPhase = ''
+  # several tests require network connectivity: we disable them.
+  # also py2.7's tk is over-eager in trying to open an x display,
+  # so give it xvfb
+  checkPhase = let
+    maybeXvfbRun = lib.optionalString isPy27 "${xvfb_run}/bin/xvfb-run";
+  in ''
     export HOME=$(mktemp -d)
-    pytest --pyargs cartopy \
+    ${maybeXvfbRun} pytest --pyargs cartopy \
       -m "not network and not natural_earth" \
       -k "not test_nightshade_image"
   '';

pkgs/development/python-modules/cassandra-driver/default.nix

@@ -21,11 +21,11 @@
 
 buildPythonPackage rec {
   pname = "cassandra-driver";
-  version = "3.17.0";
+  version = "3.17.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1z49z6f9rj9kp1v03s1hs1rg8cj49rh0yk0fc2qi57w7slgy2hkd";
+    sha256 = "1y6pnm7vzg9ip1nbly3i8mmwqmcy8g38ix74vdzvvaxwxil9bmvi";
   };
 
   buildInputs = [

pkgs/development/python-modules/cgkit/scons-env.patch

@@ -1,22 +0,0 @@
-diff --git a/supportlib/SConstruct b/supportlib/SConstruct
-index 7f797b9..07907e9 100644
---- a/supportlib/SConstruct
-+++ b/supportlib/SConstruct
-@@ -5,7 +5,7 @@
- # library.
- ######################################################################
- 
--import sys, glob, os.path
-+import sys, glob, os.path, os
- 
- # Read the options
- vars = Variables("cpp_config.cfg")
-@@ -16,7 +16,7 @@ vars.Add("CPPPATH", "The include directories", [])
- vars.Add("MSVS_VERSION", "The preferred version of MS Visual Studio")
- 
- # Create the construction environment
--env = Environment(variables = vars)
-+env = Environment(variables = vars, ENV = os.environ)
- 
- # Build the files in "obj"
- env.VariantDir("obj", "src", duplicate=0)

pkgs/development/python-modules/channels/default.nix

@@ -3,11 +3,11 @@
 }:
 buildPythonPackage rec {
   pname = "channels";
-  version = "2.1.7";
+  version = "2.2.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e13ba874d854ac493ece329dcd9947e82357c15437ac1a90ed1040d0e5b87aad";
+    sha256 = "af7cdba9efb3f55b939917d1b15defb5d40259936013e60660e5e9aff98db4c5";
   };
 
   # Files are missing in the distribution

pkgs/development/python-modules/configparser/0001-namespace-fix.patch

@@ -1,42 +0,0 @@
-From daae1ae35e13bc8107dc97d9219dfb8e172d5d2a Mon Sep 17 00:00:00 2001
-From: Frederik Rietdijk <fridh@fridh.nl>
-Date: Tue, 14 Mar 2017 15:00:33 +0100
-Subject: [PATCH] namespace fix
-
-configparser broke other namespace packages
-https://github.com/NixOS/nixpkgs/issues/23855#issuecomment-286427428
-This patch seems to solve that issue.
----
- setup.py                  | 1 -
- src/backports/__init__.py | 6 ------
- 2 files changed, 7 deletions(-)
-
-diff --git a/setup.py b/setup.py
-index 3b07823..63ed25d 100644
---- a/setup.py
-+++ b/setup.py
-@@ -42,7 +42,6 @@ setup(
-     py_modules=modules,
-     package_dir={'': 'src'},
-     packages=find_packages('src'),
--    namespace_packages=['backports'],
-     include_package_data=True,
-     zip_safe=False,
-     install_requires=requirements,
-diff --git a/src/backports/__init__.py b/src/backports/__init__.py
-index f84d25c..febdb2f 100644
---- a/src/backports/__init__.py
-+++ b/src/backports/__init__.py
-@@ -3,9 +3,3 @@
- 
- from pkgutil import extend_path
- __path__ = extend_path(__path__, __name__)
--
--try:
--    import pkg_resources
--    pkg_resources.declare_namespace(__name__)
--except ImportError:
--    pass
--- 
-2.11.1
-

pkgs/development/python-modules/confluent-kafka/default.nix

@@ -1,18 +1,18 @@
-{ stdenv, buildPythonPackage, fetchPypi, isPy3k, rdkafka, requests, avro3k, avro, futures}:
+{ stdenv, buildPythonPackage, fetchPypi, isPy3k, rdkafka, requests, avro3k, avro, futures, enum34 }:
 
 buildPythonPackage rec {
-  version = "0.11.6";
+  version = "1.0.0";
   pname = "confluent-kafka";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1dvzlafgr4g0n7382s5bgbls3f9wrgr0yxd70yyxl59wddwzfii7";
+    sha256 = "a7427944af963410479c2aaae27cc9d28db39c9a93299f14dcf16df80092c63a";
   };
 
-  buildInputs = [ rdkafka requests ] ++ (if isPy3k then [ avro3k ] else [ avro futures ]) ;
+  buildInputs = [ rdkafka requests ] ++ (if isPy3k then [ avro3k ] else [ enum34 avro futures ]) ;
 
-  # Tests fail for python3 under this pypi release
-  doCheck = if isPy3k then false else true;
+  # No tests in PyPi Tarball
+  doCheck = false;
 
   meta = with stdenv.lib; {
     description = "Confluent's Apache Kafka client for Python";

pkgs/development/python-modules/csvs-to-sqlite/default.nix

@@ -0,0 +1,49 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, pytestrunner
+, click
+, dateparser
+, pandas
+, py-lru-cache
+, six
+, pytest
+}:
+
+buildPythonPackage rec {
+  pname = "csvs-to-sqlite";
+  version = "0.9";
+
+  src = fetchFromGitHub {
+    owner = "simonw";
+    repo = pname;
+    rev = version;
+    sha256 = "0js86m4kj70g9n9gagr8l6kgswqllg6hn1xa3yvxwv95i59ihpz5";
+  };
+
+  buildInputs = [ pytestrunner ];
+
+  propagatedBuildInputs = [
+    click
+    dateparser
+    pandas
+    py-lru-cache
+    six
+  ];
+
+  checkInputs = [
+    pytest
+  ];
+
+  checkPhase = ''
+    pytest
+  '';
+
+  meta = with lib; {
+    description = "Convert CSV files into a SQLite database";
+    homepage = https://github.com/simonw/csvs-to-sqlite;
+    license = licenses.asl20;
+    maintainers = [ maintainers.costrouc ];
+  };
+
+}

pkgs/development/python-modules/cufflinks/default.nix

@@ -1,4 +1,4 @@
-{ buildPythonPackage, stdenv, fetchPypi
+{ buildPythonPackage, stdenv, fetchPypi, fetchpatch
 , numpy, pandas, plotly, six, colorlover
 , ipython, ipywidgets, nose
 }:
@@ -17,6 +17,14 @@ buildPythonPackage rec {
     ipython ipywidgets
   ];
 
+  patches = [
+    # Plotly 3.8 compatibility. Remove with the next release. See https://github.com/santosjorge/cufflinks/pull/178
+    (fetchpatch {
+      url = "https://github.com/santosjorge/cufflinks/commit/cc4c23c2b45b870f6801d1cb0312948e1f73f424.patch";
+      sha256 = "1psl2h7vscpzvb4idr6s175v8znl2mfhkcyhb1926p4saswmghw1";
+    })
+  ];
+
   checkInputs = [ nose ];
 
   checkPhase = ''

pkgs/development/python-modules/daphne/default.nix

@@ -1,10 +1,10 @@
-{ stdenv, buildPythonPackage, isPy3k, fetchFromGitHub
+{ stdenv, buildPythonPackage, isPy3k, fetchFromGitHub, fetchpatch
 , asgiref, autobahn, twisted, pytestrunner
 , hypothesis, pytest, pytest-asyncio
 }:
 buildPythonPackage rec {
   pname = "daphne";
-  version = "2.2.5";
+  version = "2.3.0";
 
   disabled = !isPy3k;
 
@@ -12,9 +12,17 @@ buildPythonPackage rec {
     owner = "django";
     repo = pname;
     rev = version;
-    sha256 = "0ixgq1rr3s60bmrwx8qwvlvs3lag1c2nrmg4iy7wcmb8i1ddylqr";
+    sha256 = "020afrvbnid13gkgjpqznl025zpynisa96kybmf8q7m3wp1iq1nl";
   };
 
+  patches = [
+    # Fix compatibility with Hypothesis 4. See: https://github.com/django/daphne/pull/261
+    (fetchpatch {
+      url = "https://github.com/django/daphne/commit/2df5096c5b63a791c209e12198ad89c998869efd.patch";
+      sha256 = "0046krzcn02mihqmsjd80kk5h5flv44nqxpapa17g6dvq3jnb97n";
+    })
+  ];
+
   nativeBuildInputs = [ pytestrunner ];
 
   propagatedBuildInputs = [ asgiref autobahn twisted ];

pkgs/development/python-modules/datasette/default.nix

@@ -0,0 +1,73 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, click
+, click-default-group
+, sanic
+, jinja2
+, hupper
+, pint
+, pluggy
+, pytest
+, pytestrunner
+, pytest-asyncio
+, aiohttp
+, beautifulsoup4
+}:
+
+buildPythonPackage rec {
+  pname = "datasette";
+  version = "0.27";
+
+  src = fetchFromGitHub {
+    owner = "simonw";
+    repo = "datasette";
+    rev = version;
+    sha256 = "02k1kk6bw034rs74w0viwzapxz684lqgjvw5q5j5xgr0i4kynylp";
+  };
+
+  buildInputs = [ pytestrunner ];
+
+  propagatedBuildInputs = [
+    click
+    click-default-group
+    sanic
+    jinja2
+    hupper
+    pint
+    pluggy
+  ];
+
+  checkInputs = [
+    pytest
+    pytest-asyncio
+    aiohttp
+    beautifulsoup4
+  ];
+
+  postConfigure = ''
+    substituteInPlace setup.py \
+      --replace "click==6.7" "click" \
+      --replace "click-default-group==1.2" "click-default-group" \
+      --replace "Sanic==0.7.0" "Sanic" \
+      --replace "hupper==1.0" "hupper" \
+      --replace "pint==0.8.1" "pint" \
+      --replace "Jinja2==2.10" "Jinja2"
+  '';
+
+  # many tests require network access
+  checkPhase = ''
+    pytest --ignore tests/test_api.py \
+           --ignore tests/test_csv.py \
+           --ignore tests/test_html.py \
+           --ignore tests/test_publish_heroku.py
+  '';
+
+  meta = with lib; {
+    description = "An instant JSON API for your SQLite databases";
+    homepage = https://github.com/simonw/datasette;
+    license = licenses.asl20;
+    maintainers = [ maintainers.costrouc ];
+  };
+
+}

pkgs/development/python-modules/distributed/default.nix

@@ -28,12 +28,12 @@
 
 buildPythonPackage rec {
   pname = "distributed";
-  version = "1.26.1";
+  version = "1.27.1";
 
   # get full repository need conftest.py to run tests
   src = fetchPypi {
     inherit pname version;
-    sha256 = "768d9cbd91a7df4a2e391729ec00e387d98e8092d61d076b2272839eb12666f7";
+    sha256 = "117q16ha03m8y9ydxg5svwx2cv1r2703hcy4a0zgjh5nhx4rfhiy";
   };
 
   checkInputs = [ pytest pytest-repeat pytest-faulthandler pytest-timeout mock joblib ];

pkgs/development/python-modules/django-allauth/default.nix

@@ -3,14 +3,14 @@
 
 buildPythonPackage rec {
   pname = "django-allauth";
-  version = "0.38.0";
+  version = "0.39.1";
 
   # no tests on PyPI
   src = fetchFromGitHub {
     owner = "pennersr";
     repo = pname;
     rev = version;
-    sha256 = "17ch8lvq47arkgvwz2fdc89lwvgphsnmjs6wwf5g1m50xclljwmq";
+    sha256 = "1kplkanhj26z3i6p0l1r5lczha4pavcx96vj3kpcp1rvyk1v0f7r";
   };
 
   propagatedBuildInputs = [ requests requests_oauthlib django python3-openid ];

pkgs/development/python-modules/django_guardian/default.nix

@@ -1,14 +1,14 @@
-{ stdenv, buildPythonPackage, fetchPypi, isPy3k
+{ stdenv, buildPythonPackage, fetchPypi
 , django_environ, mock, django, six
 , pytest, pytestrunner, pytest-django
 }:
 buildPythonPackage rec {
   pname = "django-guardian";
-  version = "1.5.0";
+  version = "1.5.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9e144bbdfa67f523dc6f70768653a19c0aac29394f947a80dcb8eb7900840637";
+    sha256 = "0fixr2g5amdgqzh0rvfvd7hbxyfd5ra3y3s0fsmp8i1b68p97930";
   };
 
   checkInputs = [ pytest pytestrunner pytest-django django_environ mock ];
@@ -18,6 +18,5 @@ buildPythonPackage rec {
     description = "Per object permissions for Django";
     homepage = https://github.com/django-guardian/django-guardian;
     license = [ licenses.mit licenses.bsd2 ];
-    broken = !isPy3k; # https://github.com/django-guardian/django-guardian/pull/605
   };
 }

pkgs/development/python-modules/djangoql/default.nix

@@ -0,0 +1,28 @@
+{ lib, buildPythonPackage, fetchPypi, python
+, django, ply }:
+
+buildPythonPackage rec {
+  pname = "djangoql";
+  version = "0.12.6";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1mwv1ljznj9mn74ncvcyfmj6ygs8xm2rajpxm88gcac9hhdmk5gs";
+  };
+
+  propagatedBuildInputs = [ ply ];
+
+  checkInputs = [ django ];
+
+  checkPhase = ''
+    export PYTHONPATH=test_project:$PYTHONPATH
+    ${python.executable} test_project/manage.py test core.tests
+  '';
+
+  meta = with lib; {
+    description = "Advanced search language for Django";
+    homepage = https://github.com/ivelum/djangoql;
+    license = licenses.mit;
+    maintainers = with maintainers; [ earvstedt ];
+  };
+}

pkgs/development/python-modules/faker/default.nix

@@ -1,8 +1,16 @@
 { lib, buildPythonPackage, fetchPypi, pythonOlder,
   # Build inputs
-  dateutil, six, text-unidecode, ipaddress ? null,
+  dateutil, six, text-unidecode, ipaddress ? null
   # Test inputs
-  email_validator, mock, ukpostcodeparser, pytestrunner, pytest}:
+  , email_validator
+  , freezegun
+  , mock
+  , more-itertools
+  , pytest
+  , pytestrunner
+  , random2
+  , ukpostcodeparser
+}:
 
 assert pythonOlder "3.3" -> ipaddress != null;
 
@@ -18,9 +26,12 @@ buildPythonPackage rec {
   buildInputs = [ pytestrunner ];
   checkInputs = [
     email_validator
+    freezegun
     mock
-    ukpostcodeparser
+    more-itertools
     pytest
+    random2
+    ukpostcodeparser
   ];
 
   propagatedBuildInputs = [
@@ -30,8 +41,11 @@ buildPythonPackage rec {
   ] ++ lib.optional (pythonOlder "3.3") ipaddress;
 
   postPatch = ''
-    find tests -type d -name "__pycache__" | xargs rm -r
     substituteInPlace setup.py --replace "pytest>=3.8.0,<3.9" "pytest"
+
+    # see https://github.com/joke2k/faker/pull/911, fine since we pin correct
+    # versions for python2
+    substituteInPlace setup.py --replace "more-itertools<6.0.0" "more-itertools"
   '';
 
   meta = with lib; {

pkgs/development/python-modules/fastpair/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, buildPythonPackage, fetchFromGitHub, pytestrunner, pytest, scipy }:
+{ stdenv, buildPythonPackage, fetchFromGitHub, pytestrunner, pytest_3, scipy }:
 
 buildPythonPackage {
   pname = "fastpair";
@@ -11,16 +11,16 @@ buildPythonPackage {
     sha256 = "1pv9sxycxdk567s5gs947rhlqngrb9nn9yh4dhdvg1ix1i8dca71";
   };
 
-  buildInputs = [ pytestrunner ];
+  nativeBuildInputs = [ (pytestrunner.override { pytest = pytest_3; }) ];
 
-  checkInputs = [ pytest ];
+  checkInputs = [ pytest_3 ];
 
   propagatedBuildInputs = [
     scipy
   ];
 
   checkPhase = ''
-    py.test fastpair
+    pytest fastpair
   '';
 
   meta = with stdenv.lib; {

pkgs/development/python-modules/filemagic/default.nix

@@ -0,0 +1,29 @@
+{ stdenv, lib, buildPythonPackage, fetchFromGitHub, file
+, isPy3k, mock, unittest2 }:
+
+buildPythonPackage rec {
+  pname = "filemagic";
+  version = "1.6";
+
+  # Don't use the PyPI source because it's missing files required for testing
+  src = fetchFromGitHub {
+    owner = "aliles";
+    repo = "filemagic";
+    rev = "138649062f769fb10c256e454a3e94ecfbf3017b";
+    sha256 = "1jxf928jjl2v6zv8kdnfqvywdwql1zqkm1v5xn1d5w0qjcg38d4n";
+  };
+
+  postPatch = ''
+    substituteInPlace magic/api.py --replace "ctypes.util.find_library('magic')" \
+      "'${file}/lib/libmagic${stdenv.hostPlatform.extensions.sharedLibrary}'"
+  '';
+
+  checkInputs = [ (if isPy3k then mock else unittest2) ];
+
+  meta = with lib; {
+    description = "File type identification using libmagic";
+    homepage = https://github.com/aliles/filemagic;
+    license = licenses.asl20;
+    maintainers = with maintainers; [ earvstedt ];
+  };
+}

pkgs/development/python-modules/fs/default.nix

@@ -19,11 +19,11 @@
 
 buildPythonPackage rec {
   pname = "fs";
-  version = "2.4.4";
+  version = "2.4.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0krf632nz24v2da7g9xivq6l2w9za3vph4vix7mm1k3byzwjnawk";
+    sha256 = "1gv23ns9szdh1dgqzvc0r94qrv8fpjqj0xv99sniy2x3rxs2n0j2";
   };
 
   buildInputs = [ glibcLocales ];

pkgs/development/python-modules/gensim/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "gensim";
-  version = "3.7.2";
+  version = "3.7.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1la4y935sdah8ywa7krwy80hcl4n2k8cdx4ncy3dg3y2mdg3vq24";
+    sha256 = "0mp1hbj7ciwpair7z445zj1grfv8c75gby9lih01c3mvw4pff7v2";
   };
 
   propagatedBuildInputs = [ smart_open numpy six scipy ];

pkgs/development/python-modules/geoalchemy2/default.nix

@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "GeoAlchemy2";
-  version = "0.6.1";
+  version = "0.6.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0bzm9zgz2gfy6smlvdgxnf6y14rfhr4vj3mjfwlxdx2vcfc95hqa";
+    sha256 = "1h04qqdzyflprgf93ihn707brx61f3my5bfdqkwllhwxvr935jyb";
   };
 
   propagatedBuildInputs = [ sqlalchemy shapely ];

pkgs/development/python-modules/geopandas/default.nix

@@ -4,14 +4,14 @@
 
 buildPythonPackage rec {
   pname = "geopandas";
-  version = "0.4.1";
+  version = "0.5.0";
   name = pname + "-" + version;
 
   src = fetchFromGitHub {
     owner = "geopandas";
     repo = "geopandas";
     rev = "v${version}";
-    sha256 = "02v3lszxvhpsb0qrqk0kcnf9jss9gdj8az2r97aqx7ya8cwaccxa";
+    sha256 = "0gmqksjgxrng52jvjk0ylkpsg0qriygb10b7n80l28kdz6c0givj";
   };
 
   checkInputs = [ pytest Rtree ];

pkgs/development/python-modules/google_cloud_speech/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "google-cloud-speech";
-  version = "0.36.3";
+  version = "1.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3d77da6086c01375908c8b800808ff83748a34b98313f885bd86df95448304fc";
+    sha256 = "1d0ysapqrcwcyiil7nyh8vbj4i6hk9v23rrm4rdhgm0lwax7i0aj";
   };
 
   propagatedBuildInputs = [ google_api_core ];

pkgs/development/python-modules/holoviews/default.nix

@@ -15,11 +15,11 @@
 
 buildPythonPackage rec {
   pname = "holoviews";
-  version = "1.11.3";
+  version = "1.12.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "cb03053bfcb96ccef181405b6d3482a5b868f0c7fbaa68b52d25e0071dafd1bc";
+    sha256 = "0i4lfnajz685hlp9m0bjn7s279bv6mm5118b1qmldzqdnvw4s032";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/httptools/default.nix

@@ -0,0 +1,21 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+}:
+
+buildPythonPackage rec {
+  pname = "httptools";
+  version = "0.0.13";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "e00cbd7ba01ff748e494248183abc6e153f49181169d8a3d41bb49132ca01dfc";
+  };
+
+  meta = with lib; {
+    description = "A collection of framework independent HTTP protocol utils";
+    homepage = https://github.com/MagicStack/httptools;
+    license = licenses.mit;
+    maintainers = [ maintainers.costrouc ];
+  };
+}

pkgs/development/python-modules/i3ipc/default.nix

@@ -5,13 +5,13 @@
 
 buildPythonPackage rec {
   pname = "i3ipc";
-  version = "1.5.1";
+  version = "1.6.0";
 
   src = fetchFromGitHub {
     owner  = "acrisci";
     repo   = "i3ipc-python";
     rev    = "v${version}";
-    sha256 = "06d7g4d7cnh0vp5diavy3x9wz1w5nwdrb7ipc4g1c3a2wc78862d";
+    sha256 = "0sb525wvwcnikjaqzha94xr97r1gjys30csmaj17swlxgyczxvq5";
   };
 
   propagatedBuildInputs = [ enum-compat ];
@@ -21,7 +21,7 @@ buildPythonPackage rec {
   checkPhase = ''${python.interpreter} run-tests.py'';
 
   meta = with stdenv.lib; {
-    description = "An improved Python library to control i3wm";
+    description = "An improved Python library to control i3wm and sway";
     homepage    = https://github.com/acrisci/i3ipc-python;
     license     = licenses.bsd3;
     maintainers = with maintainers; [ vanzef ];

pkgs/development/python-modules/inotify-simple/default.nix

@@ -0,0 +1,22 @@
+{ lib, buildPythonPackage, fetchPypi }:
+
+buildPythonPackage rec {
+  pname = "inotify-simple";
+  version = "1.1.8";
+
+  src = fetchPypi {
+    pname = "inotify_simple";
+    inherit version;
+    sha256 = "1pfqvnynwh318cakldhg7535kbs02asjsgv6s0ki12i7fgfi0b7w";
+  };
+
+  # The package has no tests
+  doCheck = false;
+
+  meta = with lib; {
+    description = "A simple Python wrapper around inotify";
+    homepage = https://github.com/chrisjbillington/inotify_simple;
+    license = licenses.bsd2;
+    maintainers = with maintainers; [ earvstedt ];
+  };
+}

pkgs/development/python-modules/j2cli/default.nix

@@ -9,12 +9,12 @@
 
 buildPythonPackage rec {
   pname = "j2cli";
-  version = "0.3.7";
+  version = "0.3.8";
   disabled = isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a7b0bdb02a3afb6d2eff40228b2216306332ace4341372310dafd15f938e1afa";
+    sha256 = "1f1a5fzap4ji5l7x8bprrgcpy1071lpa9g5h8jz7iqzgqynkaygi";
   };
 
   buildInputs = [ nose ];

pkgs/development/python-modules/kubernetes/default.nix

@@ -4,7 +4,7 @@
 
 buildPythonPackage rec {
   pname = "kubernetes";
-  version = "8.0.1";
+  version = "9.0.0";
 
   prePatch = ''
     sed -e 's/sphinx>=1.2.1,!=1.3b1,<1.4 # BSD/sphinx/' -i test-requirements.txt
@@ -23,7 +23,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0y0aygnd7kpflwdm3zxrmsgws0frk4qwq3lnq92zsiyxcxh8r4i5";
+    sha256 = "1gz3sk4s0gx68xpxjwzp9n2shlxfa9d5j4h7cvmglim9bgasxc58";
   };
 
   checkInputs = [ isort coverage pytest mock sphinx autopep8 pep8 codecov recommonmark nose ];

pkgs/development/python-modules/langdetect/default.nix

@@ -0,0 +1,21 @@
+{ lib, buildPythonPackage, fetchPypi, six }:
+
+buildPythonPackage rec {
+  pname = "langdetect";
+  version = "1.0.7";
+
+  src = fetchPypi {
+    inherit pname version;
+    extension = "zip";
+    sha256 = "0c5zm6c7xzsigbb9c7v4r33fcpz911zscfwvh3dq1qxdy3ap18ci";
+  };
+
+  propagatedBuildInputs = [ six ];
+
+  meta = with lib; {
+    description = "Python port of Google's language-detection library";
+    homepage = https://github.com/Mimino666/langdetect;
+    license = licenses.asl20;
+    maintainers = with maintainers; [ earvstedt ];
+  };
+}

pkgs/development/python-modules/lark-parser/default.nix

@@ -15,12 +15,11 @@ buildPythonPackage rec {
     sha256 = "1zynj09w361yvbxr4hir681dfnlq1hzniws9dzgmlkvd6jnhjgx3";
   };
 
-  checkPhase = ''
-    ${python.interpreter} -m unittest
+  # tests of Nearley support require js2py
+  preCheck = ''
+    rm -r tests/test_nearley
   '';
 
-  doCheck = false; # Requires js2py
-
   meta = {
     description = "A modern parsing library for Python, implementing Earley & LALR(1) and an easy interface";
     homepage = https://github.com/lark-parser/lark;

pkgs/development/python-modules/latexcodec/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "latexcodec";
-  version = "1.0.6";
+  version = "1.0.7";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0s4wdbg0w2l8pj3i0y4510i0s04p8nhxcsa2z41bjsv0k66npb81";
+    sha256 = "0wnp3yqcgx0rpy8dz51vh75lbp2qif67da19zi7m3ca98n887hgb";
   };
 
   propagatedBuildInputs = [ six ];

pkgs/development/python-modules/leveldb/default.nix

@@ -0,0 +1,19 @@
+{ lib, fetchPypi, buildPythonPackage }:
+
+buildPythonPackage rec {
+  pname = "leveldb";
+  version = "0.194";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0f6d1y65k6miimic82n8zsx50z9k982mvzp90crwcv1knjrphcww";
+  };
+
+  meta = with lib; {
+    homepage = "https://code.google.com/archive/p/py-leveldb/";
+    description = "Thread-safe Python bindings for LevelDB";
+    platforms = [ "x86_64-linux" "i686-linux" ];
+    license = licenses.bsd3;
+    maintainers = [ maintainers.aanderse ];
+  };
+}

pkgs/development/python-modules/netcdf4/default.nix

@@ -3,13 +3,13 @@
 }:
 buildPythonPackage rec {
   pname = "netCDF4";
-  version = "1.5.0.1";
+  version = "1.5.1.2";
 
   disabled = isPyPy;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "db24f7ca724e791574774b2a1e323ce0dfb544957fc6fbdb5d4c368f382b2de9";
+    sha256 = "161pqb7xc9nj0dlnp6ply8c6zv68y1frq619xqfrpmc9s1932jzk";
   };
 
   checkInputs = [ pytest ];

pkgs/development/python-modules/ordered-set/default.nix

@@ -2,13 +2,13 @@
 
 buildPythonPackage rec {
   pname = "ordered-set";
-  version = "3.1";
+  version = "3.1.1";
 
   checkInputs = [ pytest ];
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0slg1ys58dzxl96mws3sydzavdzqdk0s2nrc852dphd9kbm07dzr";
+    sha256 = "094pww79pawgmjgwi47r0fji9irb7sr4xc9xwjbb0wwcficaigx7";
   };
 
   checkPhase = ''

pkgs/development/python-modules/papis/default.nix

@@ -38,9 +38,11 @@ buildPythonPackage rec {
   ];
 
   # most of the downloader tests and 4 other tests require a network connection
+  # test_export_yaml and test_citations check for the exact output produced by pyyaml 3.x and
+  # fail with 5.x
   checkPhase = ''
     HOME=$(mktemp -d) pytest papis tests --ignore tests/downloaders \
-      -k "not test_get_data and not test_doi_to_data and not test_general and not get_document_url"
+      -k "not test_get_data and not test_doi_to_data and not test_general and not get_document_url and not test_export_yaml and not test_citations"
   '';
 
   meta = {

pkgs/development/python-modules/pdftotext/default.nix

@@ -0,0 +1,20 @@
+{ lib, buildPythonPackage, fetchPypi, poppler }:
+
+buildPythonPackage rec {
+  pname = "pdftotext";
+  version = "2.1.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1jwc2zpss0983wqqi0kpichasljsxar9c4ma8vycn8maw3pi3bg3";
+  };
+
+  buildInputs = [ poppler ];
+
+  meta = with lib; {
+    description = "Simple PDF text extraction";
+    homepage = https://github.com/jalan/pdftotext;
+    license = licenses.mit;
+    maintainers = with maintainers; [ earvstedt ];
+  };
+}

pkgs/development/python-modules/phonenumbers/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "phonenumbers";
-  version = "8.10.10";
+  version = "8.10.11";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "dabc8cfcff96446b0787ea337739ea286ec3949ec27a4790a9b4587817da5c5f";
+    sha256 = "1rd46dryxkwlha9lfqqwywazlh908ngh6076zz3myhzf8h3dmxnz";
   };
 
   meta = {

pkgs/development/python-modules/plotly/default.nix

@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "plotly";
-  version = "3.7.1";
+  version = "3.9.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1gad00c0p56zvmk2yzy03m0f3fcq67q9kdgdfxph2aw905mkwddc";
+    sha256 = "498c35a2a482f7c7937fc2f3681fec653a0191dd21e40e754a6b774234cd167e";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/py-lru-cache/default.nix

@@ -0,0 +1,23 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+}:
+
+buildPythonPackage rec {
+  pname = "py-lru-cache";
+  version = "0.1.4";
+
+  src = fetchPypi {
+    inherit version;
+    pname = "py_lru_cache";
+    sha256 = "1w3a8l3ckl1zz0f2vlfrawl9a402r458p7xzhy4sgq8k9rl37pq2";
+  };
+
+  meta = with lib; {
+    description = "An in-memory LRU cache for python";
+    homepage = https://github.com/stucchio/Python-LRU-cache;
+    license = licenses.gpl3;
+    maintainers = [ maintainers.costrouc ];
+  };
+
+}

pkgs/development/python-modules/py-radix/default.nix

@@ -0,0 +1,28 @@
+{ stdenv
+, buildPythonPackage
+, fetchFromGitHub
+, coverage
+, nose
+}:
+
+buildPythonPackage rec {
+  pname = "py-radix";
+  version = "0.10.0";
+
+  src = fetchFromGitHub {
+    owner = "mjschultz";
+    repo = "py-radix";
+    rev = "v${version}";
+    sha256 = "01xyn9lg6laavnzczf5bck1l1c2718ihxx0hvdkclnnxjqhbrqis";
+  };
+
+  doCheck = true;
+  checkInputs = [ coverage nose ];
+
+  meta = with stdenv.lib; {
+    description = "Python radix tree for IPv4 and IPv6 prefix matching";
+    homepage = https://github.com/mjschultz/py-radix;
+    license = with licenses; [ isc bsdOriginal ];
+    maintainers = with maintainers; [ mkg ];
+  };
+}

pkgs/development/python-modules/py3exiv2/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "py3exiv2";
-  version = "0.6.1";
+  version = "0.7.0";
   disabled = !(isPy3k);
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1j2pkynqdqrxf86qyzrjj76i33ylxfsrqxv4j2x9bkd0hk6x0pa6";
+    sha256 = "1gcvmglyl8ad2f336w88gwkd5djjsxdx1ind9wnlbqc3jn9i05cg";
   };
 
   buildInputs = [ exiv2 boost ];

pkgs/development/python-modules/pyaxmlparser/default.nix

@@ -1,7 +1,7 @@
 { buildPythonPackage, stdenv, lxml, click, fetchFromGitHub, pytest, isPy3k }:
 
 buildPythonPackage rec {
-  version = "0.3.13";
+  version = "0.3.15";
   pname = "pyaxmlparser";
 
   # the PyPI tarball doesn't ship tests.
@@ -9,7 +9,7 @@ buildPythonPackage rec {
     owner = "appknox";
     repo = pname;
     rev = "v${version}";
-    sha256 = "0jfjhxc6b57npsidknxmhj1x813scg47aaw90ybyr90fpdz5rlwk";
+    sha256 = "0p4x21rg8h7alrg2zk6rbgc3fj77fiyky4zzvziz2bp5jpx1pvzp";
   };
 
   disabled = !isPy3k;

pkgs/development/python-modules/pygame/pygame-v4l.patch

@@ -1,88 +0,0 @@
-diff -crB pygame-1.9.1release/Setup.in pygame-1.9.1release-v4lpatch//Setup.in
-*** pygame-1.9.1release/Setup.in	Thu Jul  2 06:41:56 2009
---- pygame-1.9.1release-v4lpatch//Setup.in	Thu Mar 24 17:31:22 2011
-***************
-*** 34,40 ****
-  _numericsndarray src/_numericsndarray.c $(SDL) $(MIXER) $(DEBUG)
-  movie src/movie.c $(SDL) $(SMPEG) $(DEBUG)
-  scrap src/scrap.c $(SDL) $(SCRAP) $(DEBUG)
-! _camera src/_camera.c src/camera_v4l2.c src/camera_v4l.c $(SDL) $(DEBUG)
-  pypm src/pypm.c $(SDL) $(PORTMIDI) $(PORTTIME) $(DEBUG)
-  
-  GFX = src/SDL_gfx/SDL_gfxPrimitives.c 
---- 34,40 ----
-  _numericsndarray src/_numericsndarray.c $(SDL) $(MIXER) $(DEBUG)
-  movie src/movie.c $(SDL) $(SMPEG) $(DEBUG)
-  scrap src/scrap.c $(SDL) $(SCRAP) $(DEBUG)
-! _camera src/_camera.c src/camera_v4l2.c $(SDL) $(DEBUG)
-  pypm src/pypm.c $(SDL) $(PORTMIDI) $(PORTTIME) $(DEBUG)
-  
-  GFX = src/SDL_gfx/SDL_gfxPrimitives.c 
-diff -crB pygame-1.9.1release/src/_camera.c pygame-1.9.1release-v4lpatch//src/_camera.c
-*** pygame-1.9.1release/src/_camera.c	Sun Mar 15 20:30:41 2009
---- pygame-1.9.1release-v4lpatch//src/_camera.c	Thu Mar 24 16:58:18 2011
-***************
-*** 160,179 ****
-  {
-  #if defined(__unix__)
-      if (v4l2_open_device(self) == 0) {
-!         if (v4l_open_device(self) == 0) {
-!             v4l2_close_device(self);
-!             return NULL;
-!         } else {
-!             self->camera_type = CAM_V4L;
-!             if (v4l_init_device(self) == 0) {
-!                 v4l2_close_device(self);
-!                 return NULL;
-!             }
-!             if (v4l_start_capturing(self) == 0) {
-!                 v4l2_close_device(self);
-!                 return NULL;
-!             }
-!         }
-      } else {
-          self->camera_type = CAM_V4L2;
-          if (v4l2_init_device(self) == 0) {
---- 160,167 ----
-  {
-  #if defined(__unix__)
-      if (v4l2_open_device(self) == 0) {
-! 	v4l2_close_device(self);
-!         return NULL;
-      } else {
-          self->camera_type = CAM_V4L2;
-          if (v4l2_init_device(self) == 0) {
-diff -crB pygame-1.9.1release/src/camera.h pygame-1.9.1release-v4lpatch//src/camera.h
-*** pygame-1.9.1release/src/camera.h	Fri Oct 10 04:37:10 2008
---- pygame-1.9.1release-v4lpatch//src/camera.h	Thu Mar 24 16:44:32 2011
-***************
-*** 39,45 ****
-  
-      #include <asm/types.h>          /* for videodev2.h */
-  
--     #include <linux/videodev.h>
-      #include <linux/videodev2.h>
-  #endif
-  
---- 39,44 ----
-***************
-*** 51,57 ****
-  #define RGB_OUT 1
-  #define YUV_OUT 2
-  #define HSV_OUT 4
-- #define CAM_V4L 1
-  #define CAM_V4L2 2
-  
-  struct buffer 
---- 50,55 ----
-***************
-*** 111,118 ****
-  int v4l2_close_device (PyCameraObject* self);
-  int v4l2_open_device (PyCameraObject* self);
-  
-- /* internal functions specific to v4l */
-- int v4l_open_device (PyCameraObject* self);
-- int v4l_init_device(PyCameraObject* self);
-- int v4l_start_capturing(PyCameraObject* self);
-  #endif
---- 109,112 ----

pkgs/development/python-modules/pyopenssl/default.nix

@@ -32,12 +32,25 @@ let
     "test_set_notBefore"
   ];
 
+  # these tests are extremely tightly wed to the exact output of the openssl cli tool,
+  # including exact punctuation.
+  failingOpenSSL_1_1Tests = [
+    "test_dump_certificate"
+    "test_dump_privatekey_text"
+    "test_dump_certificate_request"
+    "test_export_text"
+  ];
+
   disabledTests = [
     # https://github.com/pyca/pyopenssl/issues/692
     # These tests, we disable always.
     "test_set_default_verify_paths"
     "test_fallback_default_verify_paths"
-  ] ++ (optionals (hasPrefix "libressl" openssl.meta.name) failingLibresslTests);
+  ] ++ (
+    optionals (hasPrefix "libressl" openssl.meta.name) failingLibresslTests
+  ) ++ (
+    optionals (versionAtLeast (getVersion openssl.name) "1.1") failingOpenSSL_1_1Tests
+  );
 
   # Compose the final string expression, including the "-k" and the single quotes.
   testExpression = optionalString (disabledTests != [])

pkgs/development/python-modules/pytest-env/default.nix

@@ -0,0 +1,20 @@
+{ lib, buildPythonPackage, fetchPypi, pytest }:
+
+buildPythonPackage rec {
+  pname = "pytest-env";
+  version = "0.6.2";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1hl0ln0cicdid4qjk7mv90lw9xkb0v71dlj7q7rn89vzxxm9b53y";
+  };
+
+  checkInputs = [ pytest ];
+
+  meta = with lib; {
+    description = "Pytest plugin used to set environment variables";
+    homepage = https://github.com/MobileDynasty/pytest-env;
+    license = licenses.mit;
+    maintainers = with maintainers; [ earvstedt ];
+  };
+}

pkgs/development/python-modules/pytest-sanic/default.nix

@@ -0,0 +1,33 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, pytest
+, aiohttp
+, async_generator
+}:
+
+buildPythonPackage rec {
+  pname = "pytest-sanic";
+  version = "1.0.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0vlaq6p9g2p1xj9wshmin58p1faf5h9rcxvmjapx26zv8n23rnm1";
+  };
+
+  propagatedBuildInputs = [
+    pytest
+    aiohttp
+    async_generator
+  ];
+
+  # circular dependency on sanic
+  doCheck = false;
+
+  meta = with lib; {
+    description = "A pytest plugin for Sanic";
+    homepage = https://github.com/yunstanford/pytest-sanic/;
+    license = licenses.asl20;
+    maintainers = [ maintainers.costrouc ];
+  };
+}

pkgs/development/python-modules/pytest-sugar/default.nix

@@ -1,4 +1,10 @@
-{ stdenv, buildPythonPackage, fetchPypi, termcolor, pytest }:
+{ lib
+, buildPythonPackage
+, fetchPypi
+, termcolor
+, pytest
+, packaging
+}:
 
 buildPythonPackage rec {
   pname = "pytest-sugar";
@@ -9,19 +15,16 @@ buildPythonPackage rec {
     sha256 = "fcd87a74b2bce5386d244b49ad60549bfbc4602527797fac167da147983f58ab";
   };
 
-  propagatedBuildInputs = [ termcolor pytest ];
+  propagatedBuildInputs = [
+    termcolor
+    pytest
+    packaging
+  ];
 
-  checkPhase = ''
-    py.test
-  '';
-
-  meta = with stdenv.lib; {
+  meta = with lib; {
     description = "A plugin that changes the default look and feel of py.test";
     homepage = https://github.com/Frozenball/pytest-sugar;
     license = licenses.bsd3;
-
-    # incompatible with pytest 3.5
-    # https://github.com/Frozenball/pytest-sugar/issues/134
-    broken = true; # 2018-04-20
+    maintainers = [ maintainers.costrouc ];
   };
 }

pkgs/development/python-modules/python-dotenv/default.nix

@@ -0,0 +1,20 @@
+{ lib, buildPythonPackage, fetchPypi, click, ipython }:
+
+buildPythonPackage rec {
+  pname = "python-dotenv";
+  version = "0.10.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1q4sp6ppjiqlsz3h43q9iya4n3qkhx6ng16bcbacfxdyrp9xvcf9";
+  };
+
+  checkInputs = [ click ipython ];
+
+  meta = with lib; {
+    description = "Add .env support to your django/flask apps in development and deployments";
+    homepage = https://github.com/theskumar/python-dotenv;
+    license = licenses.bsdOriginal;
+    maintainers = with maintainers; [ earvstedt ];
+  };
+}

pkgs/development/python-modules/python-gnupg/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, buildPythonPackage, fetchPypi, gnupg1 }:
+{ stdenv, buildPythonPackage, fetchPypi, gnupg }:
 
 buildPythonPackage rec {
   pname   = "python-gnupg";
@@ -12,9 +12,9 @@ buildPythonPackage rec {
   # Let's make the library default to our gpg binary
   patchPhase = ''
     substituteInPlace gnupg.py \
-    --replace "gpgbinary='gpg'" "gpgbinary='${gnupg1}/bin/gpg'"
+    --replace "gpgbinary='gpg'" "gpgbinary='${gnupg}/bin/gpg'"
     substituteInPlace test_gnupg.py \
-    --replace "gpgbinary=GPGBINARY" "gpgbinary='${gnupg1}/bin/gpg'" \
+    --replace "gpgbinary=GPGBINARY" "gpgbinary='${gnupg}/bin/gpg'" \
     --replace "test_search_keys" "disabled__test_search_keys"
   '';
 

pkgs/development/python-modules/python-igraph/default.nix

@@ -1,22 +1,24 @@
-{ buildPythonPackage, fetchPypi, lib,
-  pkgconfig, igraph }:
+{ buildPythonPackage, fetchPypi, lib, isPy3k
+, pkgconfig, igraph }:
 
 buildPythonPackage rec {
   pname = "python-igraph";
   version = "0.7.1.post6";
 
-  buildInputs = [ pkgconfig igraph ];
+  nativeBuildInputs = [ pkgconfig ];
+  buildInputs = [ igraph ];
 
   src = fetchPypi {
     inherit pname version;
     sha256 = "0xp61zz710qlzhmzbfr65d5flvsi8zf2xy78s6rsszh719wl5sm5";
   };
 
+  doCheck = !isPy3k;
+
   meta = {
     description = "High performance graph data structures and algorithms";
+    homepage = "https://igraph.org/python/";
     license = lib.licenses.gpl2;
     maintainers = [ lib.maintainers.MostAwesomeDude ];
   };
 }
-
-

pkgs/development/python-modules/qdarkstyle/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "qdarkstyle";
-  version = "2.6.5";
+  version = "2.6.8";
 
   src = fetchPypi {
     inherit version;
     pname = "QDarkStyle";
-    sha256 = "96b14cd0440a0f73db4e14c5accdaa08072625d0395ae011d444508cbd73eb9e";
+    sha256 = "18l2ynq2x8jd380nr47xy947c3qdmhv8nnxnan03y5d51azm8yh3";
   };
 
   # No tests available

pkgs/development/python-modules/qtconsole/default.nix

@@ -14,11 +14,11 @@
 
 buildPythonPackage rec {
   pname = "qtconsole";
-  version = "4.4.3";
+  version = "4.4.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1b03n1ixzscm0jw97l4dq5iy4fslnqxq5bb8287xb7n2a1gs26xw";
+    sha256 = "1qqyk5wlaps1m2hb5n2q1gynw2ayqn31dvxwwni4450ygf65arx6";
   };
 
   checkInputs = [ nose ] ++ lib.optionals isPy27 [mock];

pkgs/development/python-modules/qtpy/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "QtPy";
-  version = "1.7.0";
+  version = "1.7.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0gjg7farw6mkmrwqcg6ms7j74g8py2msvawddji4wy8yfvql1ifl";
+    sha256 = "17pdn4d77gjjrsq7m1i6dz9px0dfi6wgaqz2v3sa3crl15spawp9";
   };
 
   # no concrete propagatedBuildInputs as multiple backends are supposed

pkgs/development/python-modules/quandl/allow-requests-v2.18.patch

@@ -1,12 +0,0 @@
-diff --git a/setup.py b/setup.py
---- a/setup.py
-+++ b/setup.py
-@@ -18,7 +18,7 @@ from version import VERSION  # NOQA
- install_requires = [
-     'pandas >= 0.14',
-     'numpy >= 1.8',
--    'requests >= 2.7.0, < 2.18',  # Version 2.18 appears to break pulling data.
-+    'requests >= 2.7.0', # Works fine
-     'inflection >= 0.3.1',
-     'python-dateutil',
-     'six',

pkgs/development/python-modules/ropper/default.nix

@@ -8,11 +8,11 @@
 
 buildPythonApplication rec {
   pname = "ropper";
-  version = "1.11.13";
+  version = "1.12.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "245c6a1c8b294209bed039cd6a389f1e298d3fe6783d48ad9c6b2df3a41f51ee";
+    sha256 = "1aignpxz6rcbf6yxy1gjr708p56i6nqrbgblq24nanssz9rhkyzg";
   };
   # XXX tests rely on user-writeable /dev/shm to obtain process locks and return PermissionError otherwise
   # workaround: sudo chmod 777 /dev/shm
@@ -25,7 +25,7 @@ buildPythonApplication rec {
   propagatedBuildInputs = [ capstone filebytes ];
   meta = with stdenv.lib; {
     homepage = https://scoding.de/ropper/;
-    license = licenses.gpl2;
+    license = licenses.bsd3;
     description = "Show information about files in different file formats";
     maintainers = with maintainers; [ bennofs ];
   };

pkgs/development/python-modules/sanic/default.nix

@@ -0,0 +1,68 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, httptools
+, aiofiles
+, websockets
+, multidict
+, uvloop
+, ujson
+, pytest
+, gunicorn
+, pytestcov
+, aiohttp
+, beautifulsoup4
+, pytest-sanic
+, pytest-sugar
+, pytest-benchmark
+}:
+
+buildPythonPackage rec {
+  pname = "sanic";
+  version = "19.3.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "ce434eb154872ca64493a6c3a288f11fd10bca0de7be7bf9f1d0d063185e51ec";
+  };
+
+  propagatedBuildInputs = [
+    httptools
+    aiofiles
+    websockets
+    multidict
+    uvloop
+    ujson
+  ];
+
+  checkInputs = [
+    pytest
+    gunicorn
+    pytestcov
+    aiohttp
+    beautifulsoup4
+    pytest-sanic
+    pytest-sugar
+    pytest-benchmark
+  ];
+
+  postConfigure = ''
+    substituteInPlace setup.py \
+      --replace "websockets>=6.0,<7.0" "websockets"
+  '';
+
+  # 10/500 tests ignored due to missing directory and
+  # requiring network access
+  checkPhase = ''
+    pytest --ignore tests/test_blueprints.py \
+           --ignore tests/test_routes.py \
+           --ignore tests/test_worker.py
+  '';
+
+  meta = with lib; {
+    description = "A microframework based on uvloop, httptools, and learnings of flask";
+    homepage = http://github.com/channelcat/sanic/;
+    license = licenses.mit;
+    maintainers = [ maintainers.costrouc ];
+  };
+}

pkgs/development/python-modules/seabreeze/default.nix

@@ -0,0 +1,44 @@
+{ stdenv
+, fetchFromGitHub
+, buildPythonPackage
+, pyusb
+, numpy
+}:
+
+## Usage
+# In NixOS, simply add the `udev` multiple output to services.udev.packages:
+#   services.udev.packages = [ pkgs.python3Packages.seabreeze.udev ];
+
+buildPythonPackage rec {
+  pname = "seabreeze";
+  version = "0.6.0";
+
+  src = fetchFromGitHub {
+    owner = "ap--";
+    repo = "python-seabreeze";
+    rev = "python-seabreeze-v${version}";
+    sha256 = "0bc2s9ic77gz9m40w89snixphxlzib60xa4f49n4zasjrddfz1l8";
+  };
+
+  outputs = [ "out" "udev" ];
+
+  postInstall = ''
+    mkdir -p $udev/lib/udev/rules.d
+    cp misc/10-oceanoptics.rules $udev/lib/udev/rules.d/10-oceanoptics.rules
+  '';
+
+  # underlying c libraries are tested and fail
+  # (c libs are used with anaconda, which we don't care about as we use the alternative path, being that of pyusb).
+  doCheck = false;
+
+  propagatedBuildInputs = [ pyusb numpy ];
+
+  setupPyBuildFlags = [ "--without-cseabreeze" ];
+
+  meta = with stdenv.lib; {
+    homepage = "https://github.com/ap--/python-seabreeze";
+    description = "A python library to access Ocean Optics spectrometers";
+    maintainers = [];
+    license = licenses.mit;
+  };
+}

pkgs/development/python-modules/service_identity/default.nix

@@ -1,10 +1,11 @@
 { lib
 , buildPythonPackage
 , fetchFromGitHub
-, characteristic
+, pythonOlder
+, cryptography
+, ipaddress
 , pyasn1
 , pyasn1-modules
-, pyopenssl
 , idna
 , attrs
 , pytest
@@ -12,18 +13,18 @@
 
 buildPythonPackage rec {
   pname = "service_identity";
-  version = "17.0.0";
+  version = "18.1.0";
 
   src = fetchFromGitHub {
     owner = "pyca";
     repo = pname;
     rev = version;
-    sha256 = "1fn332fci776m5a7jx8c1jgbm27160ip5qvv8p01c242ag6by5g0";
+    sha256 = "1aw475ksmd4vpl8cwfdcsw2v063nbhnnxpy633sb75iqp9aazhlx";
   };
 
   propagatedBuildInputs = [
-    characteristic pyasn1 pyasn1-modules pyopenssl idna attrs
-  ];
+    pyasn1 pyasn1-modules idna attrs cryptography
+  ] ++ lib.optionals (pythonOlder "3.3") [ ipaddress ];
 
   checkInputs = [ pytest ];
   checkPhase = "py.test";

pkgs/development/python-modules/shodan/default.nix

@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "shodan";
-  version = "1.12.1";
+  version = "1.13.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0fd68yaqhpay7jxhyc6xkdrak88wdblxs0phgdkngbakx2yaw2y3";
+    sha256 = "06z9h5vxrvqns3yr4jfrxifw0iqdn6ijlnznpmyi8nc18h8yma2a";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/smart_open/default.nix

@@ -12,11 +12,11 @@
 
 buildPythonPackage rec {
   pname = "smart_open";
-  version = "1.8.2";
+  version = "1.8.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d3c16477ad7e8f94ab033630ea31993670ad21153172367db1acb143077d501c";
+    sha256 = "029b0ns6q9vl4pyk1w7jp4dvif1mfgr53a58z1p8zipwnhkfwnih";
   };
 
   # nixpkgs version of moto is >=1.2.0, remove version pin to fix build

pkgs/development/python-modules/streamz/default.nix

@@ -14,11 +14,11 @@
 
 buildPythonPackage rec {
   pname = "streamz";
-  version = "0.5.0";
+  version = "0.5.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "cfdd42aa62df299f550768de5002ec83112136a34b44441db9d633b2df802fb4";
+    sha256 = "80c9ded1d6e68d3b78339deb6e9baf93a633d84b4a8875221e337ac06890103f";
   };
 
   checkInputs = [ pytest networkx distributed confluent-kafka graphviz ];
@@ -29,8 +29,9 @@ buildPythonPackage rec {
     six
   ];
 
+  # Disable test_tcp_async because fails on sandbox build
   checkPhase = ''
-    pytest
+    pytest --deselect=streamz/tests/test_sources.py::test_tcp_async
   '';
 
   meta = with lib; {

pkgs/development/python-modules/stripe/default.nix

@@ -3,7 +3,7 @@
 
 buildPythonPackage rec {
   pname = "stripe";
-  version = "2.21.0";
+  version = "2.27.0";
 
   # Tests require network connectivity and there's no easy way to disable
   # them. ~ C.
@@ -11,7 +11,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "170f76f2502888debf02da580138c840497b9359876ca3838f4692f2f02c9110";
+    sha256 = "0pvypngbmiji92nfs28bmiyl7brsm6cj18d9vhnwyydnzn3nlkl1";
   };
 
   checkInputs = [ unittest2 mock ];

pkgs/development/python-modules/tess/default.nix

@@ -0,0 +1,30 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, cython
+, numpy
+, scipy
+}:
+
+buildPythonPackage rec {
+  pname = "tess";
+  version = "unstable-2019-05-07";
+
+  src = fetchFromGitHub {
+    owner = "wackywendell";
+    repo = "tess";
+    rev = "22c19df952732f9749637d1bf6d7b676b6c7b26c";
+    sha256 = "0pj18nrfx749fjc6bjdk5r3g1104c6jy6xg7jrpmssllhypbb1m4";
+  };
+
+  buildInputs = [ cython ];
+
+  propagatedBuildInputs = [ numpy scipy ];
+
+  meta = with lib; {
+    description = "A module for calculating and analyzing Voronoi tessellations";
+    homepage = https://tess.readthedocs.org;
+    license = licenses.bsd3;
+    maintainers = [ maintainers.costrouc ];
+  };
+}

pkgs/development/python-modules/traits/default.nix

@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "traits";
-  version = "5.0.0";
+  version = "5.1.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8369117036fbbe00dbd40e1a01c8775b52bdbfa11db5788168e7c8c56663bac0";
+    sha256 = "0lwmqgkjihqkf269xmdqsa302p378zjcpz01k9a98br7ngzrsj64";
   };
 
   # Use pytest because its easier to discover tests

pkgs/development/python-modules/typed-ast/default.nix

@@ -1,10 +1,10 @@
 { buildPythonPackage, fetchPypi, lib, pythonOlder }:
 buildPythonPackage rec {
   pname = "typed-ast";
-  version = "1.3.4";
+  version = "1.3.5";
   src = fetchPypi{
     inherit pname version;
-    sha256 = "68c362848d9fb71d3c3e5f43c09974a0ae319144634e7a47db62f0f2a54a7fa7";
+    sha256 = "1m7pr6qpana3cvqwiw7mlvrgvmw27ch5mx1592572xhlki8g85ak";
   };
   # Only works with Python 3.3 and newer;
   disabled = pythonOlder "3.3";

pkgs/development/python-modules/uvloop/default.nix

@@ -0,0 +1,30 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, pyopenssl
+, libuv
+, psutil
+, isPy27
+}:
+
+buildPythonPackage rec {
+  pname = "uvloop";
+  version = "0.12.2";
+  disabled = isPy27;
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "c48692bf4587ce281d641087658eca275a5ad3b63c78297bbded96570ae9ce8f";
+  };
+
+  buildInputs = [ libuv ];
+
+  checkInputs = [ pyopenssl psutil ];
+
+  meta = with lib; {
+    description = "Fast implementation of asyncio event loop on top of libuv";
+    homepage = http://github.com/MagicStack/uvloop;
+    license = licenses.mit;
+    maintainers = [ maintainers.costrouc ];
+  };
+}

pkgs/development/python-modules/zstd/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "zstd";
-  version = "1.3.8.1";
+  version = "1.4.0.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d89e884da59c35e480439f1663cb3cb4cf372e42ba0eb0bdf22b9625414702a3";
+    sha256 = "01prq9rwz1gh42idnj2162w79dzs8gf3ac8pn12lz347w280kjbk";
   };
 
   postPatch = ''