From ef0486b1f91fc9df5a0d92a32765f3aa18be6345 Mon Sep 17 00:00:00 2001
From: rybern <ryanbernstein1@gmail.com>
Date: Thu, 16 Nov 2017 02:52:56 -0500
Subject: [PATCH] vcftools: init at 0.1.15 (#31339)
---
.../science/biology/vcftools/default.nix | 24 +++++++++++++++++++
pkgs/top-level/all-packages.nix | 2 ++
2 files changed, 26 insertions(+)
create mode 100755 pkgs/applications/science/biology/vcftools/default.nix
diff --git a/pkgs/applications/science/biology/vcftools/default.nix b/pkgs/applications/science/biology/vcftools/default.nix
new file mode 100755
index 00000000000..ab3050955df
--- /dev/null
+++ b/pkgs/applications/science/biology/vcftools/default.nix
@@ -0,0 +1,24 @@
+{ stdenv, fetchFromGitHub, htslib, zlib, autoreconfHook, pkgconfig, perl }:
+
+stdenv.mkDerivation rec {
+ name = "${pname}-${version}";
+ pname = "vcftools";
+ version = "0.1.15";
+
+ src = fetchFromGitHub {
+ repo = pname;
+ owner = "vcftools";
+ rev = "v${version}";
+ sha256 = "15yxr4kidqb42gkbd6rjra6b07wpl6rgivlh9q73yavh5myafqk4";
+ };
+
+ buildInputs = [ autoreconfHook pkgconfig zlib perl ];
+
+ meta = with stdenv.lib; {
+ description = "A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project";
+ license = licenses.lgpl3;
+ platforms = platforms.linux;
+ homepage = https://vcftools.github.io/index.html;
+ maintainers = [ maintainers.rybern ];
+ };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 4e70061eb03..179e8a46a35 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -4860,6 +4860,8 @@ with pkgs;
vboot_reference = callPackage ../tools/system/vboot_reference { };
+ vcftools = callPackage ../applications/science/biology/vcftools { };
+
vcsh = callPackage ../applications/version-management/vcsh {
inherit (perlPackages) ShellCommand TestMost;
};