Merge branch 'master' into staging

... to fix an evaluation problem in dogecoin.

lib/maintainers.nix

@@ -86,9 +86,9 @@
   carlsverre = "Carl Sverre <accounts@carlsverre.com>";
   cdepillabout = "Dennis Gosnell <cdep.illabout@gmail.com>";
   cfouche = "Chaddaï Fouché <chaddai.fouche@gmail.com>";
+  changlinli = "Changlin Li <mail@changlinli.com>";
   chaoflow = "Florian Friesdorf <flo@chaoflow.net>";
   chattered = "Phil Scott <me@philscotted.com>";
-  changlinli = "Changlin Li <mail@changlinli.com>";
   choochootrain = "Hurshal Patel <hurshal@imap.cc>";
   chris-martin = "Chris Martin <ch.martin@gmail.com>";
   chrisjefferson = "Christopher Jefferson <chris@bubblescope.net>";
@@ -383,6 +383,7 @@
   Phlogistique = "Noé Rubinstein <noe.rubinstein@gmail.com>";
   phreedom = "Evgeny Egorochkin <phreedom@yandex.ru>";
   phunehehe = "Hoang Xuan Phu <phunehehe@gmail.com>";
+  pierrer = "Pierre Radermecker <pierrer@pi3r.be>";
   pierron = "Nicolas B. Pierron <nixos@nbp.name>";
   piotr = "Piotr Pietraszkiewicz <ppietrasa@gmail.com>";
   pjbarnoy = "Perry Barnoy <pjbarnoy@gmail.com>";
@@ -534,6 +535,7 @@
   womfoo = "Kranium Gikos Mendoza <kranium@gikos.net>";
   wscott = "Wayne Scott <wsc9tt@gmail.com>";
   wyvie = "Elijah Rum <elijahrum@gmail.com>";
+  xnwdd = "Guillermo NWDD <nwdd+nixos@no.team>";
   xwvvvvwx = "David Terry <davidterry@posteo.de>";
   yarr = "Dmitry V. <savraz@gmail.com>";
   yochai = "Yochai <yochai@titat.info>";

nixos/modules/installer/cd-dvd/iso-image.nix

@@ -280,7 +280,7 @@ in
         options = [ "allow_other" "cow" "nonempty" "chroot=/mnt-root" "max_files=32768" "hide_meta_files" "dirs=/nix/.rw-store=rw:/nix/.ro-store=ro" ];
       };
 
-    boot.initrd.availableKernelModules = [ "squashfs" "iso9660" "usb-storage" ];
+    boot.initrd.availableKernelModules = [ "squashfs" "iso9660" "usb-storage" "uas" ];
 
     boot.blacklistedKernelModules = [ "nouveau" ];
 

nixos/modules/services/continuous-integration/buildbot/master.nix

@@ -118,7 +118,7 @@ in {
 
       extraGroups = mkOption {
         type = types.listOf types.str;
-        default = [ "nixbld" ];
+        default = [];
         description = "List of extra groups that the buildbot user should be a part of.";
       };
 

nixos/modules/services/continuous-integration/buildbot/worker.nix

@@ -31,7 +31,7 @@ in {
 
       extraGroups = mkOption {
         type = types.listOf types.str;
-        default = [ "nixbld" ];
+        default = [];
         description = "List of extra groups that the Buildbot Worker user should be a part of.";
       };
 

nixos/modules/services/monitoring/das_watchdog.nix

@@ -25,7 +25,7 @@ in {
       wantedBy = [ "multi-user.target" ];
       serviceConfig = {
         User = "root";
-        Type = "oneshot";
+        Type = "simple";
         ExecStart = "${das_watchdog}/bin/das_watchdog";
         RemainAfterExit = true;
       };

nixos/modules/services/networking/ddclient.nix

@@ -7,7 +7,7 @@ let
 
   stateDir = "/var/spool/ddclient";
   ddclientUser = "ddclient";
-  ddclientFlags = "-foreground -verbose -noquiet -file ${config.services.ddclient.configFile}";
+  ddclientFlags = "-foreground -file ${config.services.ddclient.configFile}";
   ddclientPIDFile = "${stateDir}/ddclient.pid";
 
 in
@@ -102,6 +102,22 @@ in
           Method to determine the IP address to send to the dynamic DNS provider.
         '';
       };
+
+      verbose = mkOption {
+        default = true;
+        type = bool;
+        description = ''
+          Print verbose information.
+        '';
+      };
+
+      quiet = mkOption {
+        default = false;
+        type = bool;
+        description = ''
+          Print no messages for unnecessary updates.
+        '';
+      };
     };
   };
 
@@ -136,6 +152,8 @@ in
           lib.optionalString (server != "") "server=${server}"}
         ssl=${if config.services.ddclient.ssl then "yes" else "no"}
         wildcard=YES
+        quiet=${if config.services.ddclient.quiet then "yes" else "no"}
+        verbose=${if config.services.ddclient.verbose then "yes" else "no"}
         ${config.services.ddclient.domain}
         ${config.services.ddclient.extraConfig}
       '';

nixos/modules/services/networking/dnscrypt-proxy.nix

@@ -155,15 +155,59 @@ in
     };
   };
 
-  config = mkIf cfg.enable {
-
+  config = mkIf cfg.enable (mkMerge [{
     assertions = [
       { assertion = (cfg.customResolver != null) || (cfg.resolverName != null);
         message   = "please configure upstream DNSCrypt resolver";
       }
     ];
 
-    security.apparmor.profiles = optional apparmorEnabled (pkgs.writeText "apparmor-dnscrypt-proxy" ''
+    users.users.dnscrypt-proxy = {
+      description = "dnscrypt-proxy daemon user";
+      isSystemUser = true;
+      group = "dnscrypt-proxy";
+    };
+    users.groups.dnscrypt-proxy = {};
+
+    systemd.sockets.dnscrypt-proxy = {
+      description = "dnscrypt-proxy listening socket";
+      documentation = [ "man:dnscrypt-proxy(8)" ];
+
+      wantedBy = [ "sockets.target" ];
+
+      socketConfig = {
+        ListenStream = localAddress;
+        ListenDatagram = localAddress;
+      };
+    };
+
+    systemd.services.dnscrypt-proxy = {
+      description = "dnscrypt-proxy daemon";
+      documentation = [ "man:dnscrypt-proxy(8)" ];
+
+      before = [ "nss-lookup.target" ];
+
+      after = [ "network.target" ]
+        ++ optional apparmorEnabled "apparmor.service";
+
+      requires = [ "dnscrypt-proxy.socket "]
+        ++ optional apparmorEnabled "apparmor.service";
+
+      serviceConfig = {
+        NonBlocking = "true";
+        ExecStart = "${dnscrypt-proxy}/bin/dnscrypt-proxy ${toString daemonArgs}";
+
+        User = "dnscrypt-proxy";
+
+        PrivateTmp = true;
+        PrivateDevices = true;
+        ProtectHome = true;
+      };
+    };
+    }
+
+    (mkIf apparmorEnabled {
+    security.apparmor.profiles = singleton (pkgs.writeText "apparmor-dnscrypt-proxy" ''
       ${dnscrypt-proxy}/bin/dnscrypt-proxy {
         /dev/null rw,
         /dev/urandom r,
@@ -188,102 +232,78 @@ in
         ${getLib pkgs.libgpgerror}/lib/libgpg-error.so.* mr,
         ${getLib pkgs.libcap}/lib/libcap.so.* mr,
         ${getLib pkgs.lz4}/lib/liblz4.so.* mr,
-        ${getLib pkgs.attr}/lib/libattr.so.* mr,
+        ${getLib pkgs.attr}/lib/libattr.so.* mr, # */
 
         ${resolverList} r,
       }
     '');
+    })
 
-    users.users.dnscrypt-proxy = {
-      description = "dnscrypt-proxy daemon user";
-      isSystemUser = true;
-      group = "dnscrypt-proxy";
-    };
-    users.groups.dnscrypt-proxy = {};
-
-    systemd.services.init-dnscrypt-proxy-statedir = optionalAttrs useUpstreamResolverList {
+    (mkIf useUpstreamResolverList {
+    systemd.services.init-dnscrypt-proxy-statedir = {
       description = "Initialize dnscrypt-proxy state directory";
+
+      wantedBy = [ "dnscrypt-proxy.service" ];
+      before = [ "dnscrypt-proxy.service" ];
+
       script = ''
         mkdir -pv ${stateDirectory}
         chown -c dnscrypt-proxy:dnscrypt-proxy ${stateDirectory}
-        cp --preserve=timestamps -uv \
+        cp -uv \
           ${pkgs.dnscrypt-proxy}/share/dnscrypt-proxy/dnscrypt-resolvers.csv \
           ${stateDirectory}
       '';
+
       serviceConfig = {
         Type = "oneshot";
         RemainAfterExit = true;
       };
     };
 
-    systemd.services.update-dnscrypt-resolvers = optionalAttrs useUpstreamResolverList {
+    systemd.services.update-dnscrypt-resolvers = {
       description = "Update list of DNSCrypt resolvers";
 
       requires = [ "init-dnscrypt-proxy-statedir.service" ];
       after = [ "init-dnscrypt-proxy-statedir.service" ];
 
-      path = with pkgs; [ curl minisign ];
+      path = with pkgs; [ curl diffutils dnscrypt-proxy minisign ];
       script = ''
         cd ${stateDirectory}
-        curl -fSsL -o dnscrypt-resolvers.csv.tmp \
-          https://download.dnscrypt.org/dnscrypt-proxy/dnscrypt-resolvers.csv
-        curl -fSsL -o dnscrypt-resolvers.csv.minisig.tmp \
-          https://download.dnscrypt.org/dnscrypt-proxy/dnscrypt-resolvers.csv.minisig
+        domain=download.dnscrypt.org
+        get="curl -fSs --resolve $domain:443:$(hostip -r 8.8.8.8 $domain | head -1)"
+        $get -o dnscrypt-resolvers.csv.tmp \
+          https://$domain/dnscrypt-proxy/dnscrypt-resolvers.csv
+        $get -o dnscrypt-resolvers.csv.minisig.tmp \
+          https://$domain/dnscrypt-proxy/dnscrypt-resolvers.csv.minisig
         mv dnscrypt-resolvers.csv.minisig{.tmp,}
         minisign -q -V -p ${upstreamResolverListPubKey} \
           -m dnscrypt-resolvers.csv.tmp -x dnscrypt-resolvers.csv.minisig
+        [[ -f dnscrypt-resolvers.csv ]] && mv dnscrypt-resolvers.csv{,.old}
         mv dnscrypt-resolvers.csv{.tmp,}
+        if cmp dnscrypt-resolvers.csv{,.old} ; then
+          echo "no change"
+        else
+          echo "resolver list updated"
+        fi
       '';
 
       serviceConfig = {
         PrivateTmp = true;
         PrivateDevices = true;
         ProtectHome = true;
-        ProtectSystem = true;
+        ProtectSystem = "strict";
+        ReadWritePaths = "${dirOf stateDirectory} ${stateDirectory}";
+        SystemCallFilter = "~@mount";
       };
     };
 
-    systemd.timers.update-dnscrypt-resolvers = optionalAttrs useUpstreamResolverList {
+    systemd.timers.update-dnscrypt-resolvers = {
+      wantedBy = [ "timers.target" ];
       timerConfig = {
         OnBootSec = "5min";
         OnUnitActiveSec = "6h";
       };
-      wantedBy = [ "timers.target" ];
     };
-
-    systemd.sockets.dnscrypt-proxy = {
-      description = "dnscrypt-proxy listening socket";
-      socketConfig = {
-        ListenStream = localAddress;
-        ListenDatagram = localAddress;
-      };
-      wantedBy = [ "sockets.target" ];
-    };
-
-    systemd.services.dnscrypt-proxy = {
-      description = "dnscrypt-proxy daemon";
-
-      before = [ "nss-lookup.target" ];
-
-      after = [ "network.target" ]
-        ++ optional apparmorEnabled "apparmor.service"
-        ++ optional useUpstreamResolverList "init-dnscrypt-proxy-statedir.service";
-
-      requires = [ "dnscrypt-proxy.socket "]
-        ++ optional apparmorEnabled "apparmor.service"
-        ++ optional useUpstreamResolverList "init-dnscrypt-proxy-statedir.service";
-
-      serviceConfig = {
-        Type = "simple";
-        NonBlocking = "true";
-        ExecStart = "${dnscrypt-proxy}/bin/dnscrypt-proxy ${toString daemonArgs}";
-
-        User = "dnscrypt-proxy";
-
-        PrivateTmp = true;
-        PrivateDevices = true;
-        ProtectHome = true;
-      };
-    };
-  };
+    })
+    ]);
 }

nixos/modules/tasks/network-interfaces.nix

@@ -560,101 +560,102 @@ in
 
     };
 
-    networking.bonds = mkOption {
-      default = { };
-      example = literalExample {
-        bond0 = {
-          interfaces = [ "eth0" "wlan0" ];
-          miimon = 100;
+    networking.bonds =
+      let
+        driverOptionsExample = {
+          miimon = "100";
           mode = "active-backup";
         };
-        fatpipe.interfaces = [ "enp4s0f0" "enp4s0f1" "enp5s0f0" "enp5s0f1" ];
-      };
-      description = ''
-        This option allows you to define bond devices that aggregate multiple,
-        underlying networking interfaces together. The value of this option is
-        an attribute set. Each attribute specifies a bond, with the attribute
-        name specifying the name of the bond's network interface
-      '';
-
-      type = with types; attrsOf (submodule {
-
-        options = {
-
-          interfaces = mkOption {
-            example = [ "enp4s0f0" "enp4s0f1" "wlan0" ];
-            type = types.listOf types.str;
-            description = "The interfaces to bond together";
+      in mkOption {
+        default = { };
+        example = literalExample {
+          bond0 = {
+            interfaces = [ "eth0" "wlan0" ];
+            driverOptions = driverOptionsExample;
           };
-
-          driverOptions = mkOption {
-            type = types.attrsOf types.str;
-            default = {};
-            example = literalExample {
-              interfaces = [ "eth0" "wlan0" ];
-              miimon = 100;
-              mode = "active-backup";
-            };
-            description = ''
-              Options for the bonding driver.
-              Documentation can be found in
-              <link xlink:href="https://www.kernel.org/doc/Documentation/networking/bonding.txt" />
-            '';
-
-          };
-
-          lacp_rate = mkOption {
-            default = null;
-            example = "fast";
-            type = types.nullOr types.str;
-            description = ''
-              DEPRECATED, use `driverOptions`.
-              Option specifying the rate in which we'll ask our link partner
-              to transmit LACPDU packets in 802.3ad mode.
-            '';
-          };
-
-          miimon = mkOption {
-            default = null;
-            example = 100;
-            type = types.nullOr types.int;
-            description = ''
-              DEPRECATED, use `driverOptions`.
-              Miimon is the number of millisecond in between each round of polling
-              by the device driver for failed links. By default polling is not
-              enabled and the driver is trusted to properly detect and handle
-              failure scenarios.
-            '';
-          };
-
-          mode = mkOption {
-            default = null;
-            example = "active-backup";
-            type = types.nullOr types.str;
-            description = ''
-              DEPRECATED, use `driverOptions`.
-              The mode which the bond will be running. The default mode for
-              the bonding driver is balance-rr, optimizing for throughput.
-              More information about valid modes can be found at
-              https://www.kernel.org/doc/Documentation/networking/bonding.txt
-            '';
-          };
-
-          xmit_hash_policy = mkOption {
-            default = null;
-            example = "layer2+3";
-            type = types.nullOr types.str;
-            description = ''
-              DEPRECATED, use `driverOptions`.
-              Selects the transmit hash policy to use for slave selection in
-              balance-xor, 802.3ad, and tlb modes.
-            '';
-          };
-
+          anotherBond.interfaces = [ "enp4s0f0" "enp4s0f1" "enp5s0f0" "enp5s0f1" ];
         };
+        description = ''
+          This option allows you to define bond devices that aggregate multiple,
+          underlying networking interfaces together. The value of this option is
+          an attribute set. Each attribute specifies a bond, with the attribute
+          name specifying the name of the bond's network interface
+        '';
 
-      });
-    };
+        type = with types; attrsOf (submodule {
+
+          options = {
+
+            interfaces = mkOption {
+              example = [ "enp4s0f0" "enp4s0f1" "wlan0" ];
+              type = types.listOf types.str;
+              description = "The interfaces to bond together";
+            };
+
+            driverOptions = mkOption {
+              type = types.attrsOf types.str;
+              default = {};
+              example = literalExample driverOptionsExample;
+              description = ''
+                Options for the bonding driver.
+                Documentation can be found in
+                <link xlink:href="https://www.kernel.org/doc/Documentation/networking/bonding.txt" />
+              '';
+
+            };
+
+            lacp_rate = mkOption {
+              default = null;
+              example = "fast";
+              type = types.nullOr types.str;
+              description = ''
+                DEPRECATED, use `driverOptions`.
+                Option specifying the rate in which we'll ask our link partner
+                to transmit LACPDU packets in 802.3ad mode.
+              '';
+            };
+
+            miimon = mkOption {
+              default = null;
+              example = 100;
+              type = types.nullOr types.int;
+              description = ''
+                DEPRECATED, use `driverOptions`.
+                Miimon is the number of millisecond in between each round of polling
+                by the device driver for failed links. By default polling is not
+                enabled and the driver is trusted to properly detect and handle
+                failure scenarios.
+              '';
+            };
+
+            mode = mkOption {
+              default = null;
+              example = "active-backup";
+              type = types.nullOr types.str;
+              description = ''
+                DEPRECATED, use `driverOptions`.
+                The mode which the bond will be running. The default mode for
+                the bonding driver is balance-rr, optimizing for throughput.
+                More information about valid modes can be found at
+                https://www.kernel.org/doc/Documentation/networking/bonding.txt
+              '';
+            };
+
+            xmit_hash_policy = mkOption {
+              default = null;
+              example = "layer2+3";
+              type = types.nullOr types.str;
+              description = ''
+                DEPRECATED, use `driverOptions`.
+                Selects the transmit hash policy to use for slave selection in
+                balance-xor, 802.3ad, and tlb modes.
+              '';
+            };
+
+          };
+
+        });
+      };
 
     networking.macvlans = mkOption {
       default = { };

nixos/modules/virtualisation/xen-dom0.nix

@@ -27,6 +27,36 @@ in
           '';
       };
 
+    virtualisation.xen.package = mkOption {
+      type = types.package;
+      default = pkgs.xen;
+      defaultText = "pkgs.xen";
+      example = literalExample "pkgs.xen-light";
+      description = ''
+        The package used for Xen binary.
+      '';
+    };
+
+    virtualisation.xen.qemu = mkOption {
+      type = types.path;
+      default = "${pkgs.xen}/lib/xen/bin/qemu-system-i386";
+      defaultText = "''${pkgs.xen}/lib/xen/bin/qemu-system-i386";
+      example = literalExample "''${pkgs.qemu_xen-light}/bin/qemu-system-i386";
+      description = ''
+        The qemu binary to use for Dom-0 backend.
+      '';
+    };
+
+    virtualisation.xen.qemu-package = mkOption {
+      type = types.package;
+      default = pkgs.xen;
+      defaultText = "pkgs.xen";
+      example = literalExample "pkgs.qemu_xen-light";
+      description = ''
+        The package with qemu binaries for xendomains.
+      '';
+    };
+
     virtualisation.xen.bootParams =
       mkOption {
         default = "";
@@ -106,9 +136,9 @@ in
       message = "Xen currently does not support EFI boot";
     } ];
 
-    virtualisation.xen.stored = mkDefault "${pkgs.xen}/bin/oxenstored";
+    virtualisation.xen.stored = mkDefault "${cfg.package}/bin/oxenstored";
 
-    environment.systemPackages = [ pkgs.xen ];
+    environment.systemPackages = [ cfg.package ];
 
     # Make sure Domain 0 gets the required configuration
     #boot.kernelPackages = pkgs.boot.kernelPackages.override { features={xen_dom0=true;}; };
@@ -144,7 +174,7 @@ in
 
     system.extraSystemBuilderCmds =
       ''
-        ln -s ${pkgs.xen}/boot/xen.gz $out/xen.gz
+        ln -s ${cfg.package}/boot/xen.gz $out/xen.gz
         echo "${toString cfg.bootParams}" > $out/xen-params
       '';
 
@@ -180,19 +210,19 @@ in
 
 
     environment.etc =
-      [ { source = "${pkgs.xen}/etc/xen/xl.conf";
+      [ { source = "${cfg.package}/etc/xen/xl.conf";
           target = "xen/xl.conf";
         }
-        { source = "${pkgs.xen}/etc/xen/scripts";
+        { source = "${cfg.package}/etc/xen/scripts";
           target = "xen/scripts";
         }
-        { source = "${pkgs.xen}/etc/default/xendomains";
+        { source = "${cfg.package}/etc/default/xendomains";
           target = "default/xendomains";
         }
       ];
 
     # Xen provides udev rules.
-    services.udev.packages = [ pkgs.xen ];
+    services.udev.packages = [ cfg.package ];
 
     services.udev.path = [ pkgs.bridge-utils pkgs.iproute ];
 
@@ -217,7 +247,7 @@ in
         time=0
         timeout=30
         # Wait for xenstored to actually come up, timing out after 30 seconds
-        while [ $time -lt $timeout ] && ! `${pkgs.xen}/bin/xenstore-read -s / >/dev/null 2>&1` ; do
+        while [ $time -lt $timeout ] && ! `${cfg.package}/bin/xenstore-read -s / >/dev/null 2>&1` ; do
             time=$(($time+1))
             sleep 1
         done
@@ -228,8 +258,8 @@ in
             exit 1
         fi
 
-        ${pkgs.xen}/bin/xenstore-write "/local/domain/0/name" "Domain-0"
-        ${pkgs.xen}/bin/xenstore-write "/local/domain/0/domid" 0
+        ${cfg.package}/bin/xenstore-write "/local/domain/0/name" "Domain-0"
+        ${cfg.package}/bin/xenstore-write "/local/domain/0/domid" 0
         '';
     };
 
@@ -256,7 +286,7 @@ in
         '';
       serviceConfig = {
         ExecStart = ''
-          ${pkgs.xen}/bin/xenconsoled${optionalString cfg.trace " --log=all --log-dir=/var/log/xen"}
+          ${cfg.package}/bin/xenconsoled${optionalString cfg.trace " --log=all --log-dir=/var/log/xen"}
           '';
       };
     };
@@ -267,8 +297,8 @@ in
       wantedBy = [ "multi-user.target" ];
       after = [ "xen-console.service" ];
       serviceConfig.ExecStart = ''
-        ${pkgs.xen}/lib/xen/bin/qemu-system-i386 -xen-domid 0 -xen-attach -name dom0 -nographic -M xenpv \
-           -monitor /dev/null -serial /dev/null -parallel /dev/null
+        ${cfg.qemu} -xen-attach -xen-domid 0 -name dom0 -M xenpv \
+           -nographic -monitor /dev/null -serial /dev/null -parallel /dev/null
         '';
     };
 
@@ -277,7 +307,7 @@ in
       description = "Xen Watchdog Daemon";
       wantedBy = [ "multi-user.target" ];
       after = [ "xen-qemu.service" ];
-      serviceConfig.ExecStart = "${pkgs.xen}/bin/xenwatchdogd 30 15";
+      serviceConfig.ExecStart = "${cfg.package}/bin/xenwatchdogd 30 15";
       serviceConfig.Type = "forking";
       serviceConfig.RestartSec = "1";
       serviceConfig.Restart = "on-failure";
@@ -366,11 +396,11 @@ in
       before = [ "dhcpd.service" ];
       restartIfChanged = false;
       serviceConfig.RemainAfterExit = "yes";
-      path = [ pkgs.xen ];
-      environment.XENDOM_CONFIG = "${pkgs.xen}/etc/sysconfig/xendomains";
+      path = [ cfg.package cfg.qemu-package ];
+      environment.XENDOM_CONFIG = "${cfg.package}/etc/sysconfig/xendomains";
       preStart = "mkdir -p /var/lock/subsys -m 755";
-      serviceConfig.ExecStart = "${pkgs.xen}/etc/init.d/xendomains start";
-      serviceConfig.ExecStop = "${pkgs.xen}/etc/init.d/xendomains stop";
+      serviceConfig.ExecStart = "${cfg.package}/etc/init.d/xendomains start";
+      serviceConfig.ExecStop = "${cfg.package}/etc/init.d/xendomains stop";
     };
 
   };

nixos/tests/networking.nix

@@ -1,4 +1,6 @@
-{ system ? builtins.currentSystem, networkd }:
+{ system ? builtins.currentSystem
+# bool: whether to use networkd in the tests
+, networkd }:
 
 with import ../lib/testing.nix { inherit system; };
 with pkgs.lib;

pkgs/applications/altcoins/dogecoin.nix

@@ -13,7 +13,7 @@ stdenv.mkDerivation rec {
     owner = "dogecoin";
     repo = "dogecoin";
     rev = "v${version}";
-    sha256 = "16q3rldj04hkzzjd23h0knszqr5dgixizy4iyc129mz8wa8pbnvyt chec";
+    sha256 = "16q3rldj04hkzzjd23h0knszqr5dgixizy4iyc129mz8wa8pbnvy";
   };
 
   nativeBuildInputs = [ pkgconfig autoreconfHook ];

pkgs/applications/editors/neovim/qt.nix

@@ -1,15 +1,15 @@
 { stdenv, fetchFromGitHub, cmake, doxygen
-, libmsgpack, makeWrapper, neovim, pythonPackages, qtbase }:
+, libmsgpack, makeQtWrapper, neovim, pythonPackages, qtbase }:
 
 stdenv.mkDerivation rec {
   name = "neovim-qt-${version}";
-  version = "0.2.4";
+  version = "0.2.6";
 
   src = fetchFromGitHub {
     owner  = "equalsraf";
     repo   = "neovim-qt";
     rev    = "v${version}";
-    sha256 = "0yf9wwkl0lbbj3vyf8hxnlsk7jhk5ggivszyqxply69dbar9ww59";
+    sha256 = "1wsxhy8fdayy4dsr2dxgh5k4jysybjlyzj134vk325v6cqz9bsgm";
   };
 
   cmakeFlags = [
@@ -17,23 +17,28 @@ stdenv.mkDerivation rec {
     "-DMSGPACK_LIBRARIES=${libmsgpack}/lib/libmsgpackc.so"
   ];
 
-  doCheck = false; # 5 out of 7 fail
+  doCheck = true;
 
   buildInputs = with pythonPackages; [
-    qtbase libmsgpack
+    neovim qtbase libmsgpack
   ] ++ (with pythonPackages; [
     jinja2 msgpack python
   ]);
 
-  nativeBuildInputs = [ cmake doxygen makeWrapper ];
+  nativeBuildInputs = [ cmake doxygen makeQtWrapper ];
 
   enableParallelBuilding = true;
 
-  # avoid cmake trying to download libmsgpack
-  preConfigure = "echo \"\" > third-party/CMakeLists.txt";
+  preConfigure = ''
+    # avoid cmake trying to download libmsgpack
+    echo "" > third-party/CMakeLists.txt
+    # we rip out the gui test as spawning a GUI fails in our build environment
+    sed -i '/^add_xtest_gui/d' test/CMakeLists.txt
+  '';
 
   postInstall = ''
-    wrapProgram "$out/bin/nvim-qt" --prefix PATH : "${neovim}/bin"
+    wrapQtProgram "$out/bin/nvim-qt" \
+      --prefix PATH : "${neovim}/bin"
   '';
 
   meta = with stdenv.lib; {

pkgs/applications/gis/qgis/default.nix

@@ -5,7 +5,7 @@
 }:
 
 stdenv.mkDerivation rec {
-  name = "qgis-2.18.3";
+  name = "qgis-2.18.4";
 
   buildInputs = [ gdal qt4 flex openssl bison proj geos xlibsWrapper sqlite gsl qwt qscintilla
     fcgi libspatialindex libspatialite postgresql qjson qca2 txt2tags ] ++
@@ -25,7 +25,7 @@ stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "http://qgis.org/downloads/${name}.tar.bz2";
-    sha256 = "155kz7fizhkmgc4lsmk1cph1zar03pdd8pjpmv81yyx1z0i4ygvl";
+    sha256 = "1s264pahxpn0215xmzm8q2khr5xspipd7bbvxah5kj339kyjfy3k";
   };
 
   cmakeFlags = stdenv.lib.optional withGrass "-DGRASS_PREFIX7=${grass}/${grass.name}";

pkgs/applications/graphics/inkscape/default.nix

@@ -5,18 +5,24 @@
 , libvisio, libcdr, libexif, automake114x, cmake
 }:
 
-let 
+let
   python2Env = python2.withPackages(ps: with ps; [ numpy lxml ]);
 in
 
 stdenv.mkDerivation rec {
-  name = "inkscape-0.92.0";
+  name = "inkscape-0.92.1";
 
   src = fetchurl {
-    url = "https://inkscape.org/gallery/item/10552/${name}.tar.bz2";
-    sha256 = "0mmssxnxsvb3bpm7ck5pqvwyacrz1nkyacs571jx8j04l1cw3d5q";
+    url = "https://media.inkscape.org/dl/resources/file/${name}.tar_XlpI7qT.bz2";
+    sha256 = "01chr3vh728dkg7l7lilwgmh5nrp784khdhjgpqjbq9dh2zhax15";
   };
 
+  unpackPhase = ''
+    cp $src ${name}.tar.bz2
+    tar xvjf ${name}.tar.bz2 > /dev/null
+    cd ${name}
+  '';
+
   postPatch = ''
     patchShebangs share/extensions
     patchShebangs fix-roff-punct

pkgs/applications/misc/cheat/default.nix

@@ -1,14 +1,14 @@
 { python3Packages, fetchurl, lib }:
 
 python3Packages.buildPythonApplication rec {
-  version = "2.1.28";
+  version = "2.2.0";
   name = "cheat-${version}";
 
   propagatedBuildInputs = with python3Packages; [ docopt pygments ];
 
   src = fetchurl {
     url = "mirror://pypi/c/cheat/${name}.tar.gz";
-    sha256 = "1a5c5f3dx3dmmvv75q2w6v2xb1i6733c0f8knr6spapvlim5i0c5";
+    sha256 = "16pg1bgyfjvzpm2rbi411ckf3gljg9v1vzd5qhp23g69ch6yr138";
   };
   # no tests available
   doCheck = false;

pkgs/applications/misc/emem/default.nix

@@ -2,14 +2,14 @@
 
 stdenv.mkDerivation rec {
   pname = "emem";
-  version = "0.2.31";
+  version = "0.2.32";
   name = "${pname}-${version}";
 
   inherit jdk;
 
   src = fetchurl {
     url = "https://github.com/ebzzry/${pname}/releases/download/v${version}/${pname}.jar";
-    sha256 = "11kciq73y76c78rpd87bmlnvv4llrf81g3d28y02llnngrbczp7v";
+    sha256 = "1ril6ljbm7mczcfgbjnswcxpxpnp0kv949bhv1f6q42pxxj1wj75";
   };
 
   buildInputs = [ ];

pkgs/applications/networking/corebird/default.nix

@@ -20,7 +20,7 @@ stdenv.mkDerivation rec {
   nativeBuildInputs = [ automake autoconf libtool pkgconfig wrapGAppsHook ];
 
   buildInputs = [
-    gtk3 json_glib sqlite libsoup gettext vala_0_32 gnome3.rest glib_networking
+    gtk3 json_glib sqlite libsoup gettext vala_0_32 gnome3.rest gnome3.dconf glib_networking
   ] ++ (with gst_all_1; [ gstreamer gst-plugins-base gst-plugins-good gst-plugins-bad gst-libav ]);
 
   meta = {

pkgs/applications/networking/instant-messengers/baresip/default.nix

@@ -4,11 +4,11 @@
 , gsm, speex, portaudio, spandsp, libuuid, ccache
 }:
 stdenv.mkDerivation rec {
-  version = "0.5.0";
+  version = "0.5.1";
   name = "baresip-${version}";
   src=fetchurl {
     url = "http://www.creytiv.com/pub/baresip-${version}.tar.gz";
-    sha256 = "0dhlgjkqn7jkd1pmdyid41c829clzmi5kczjdwxzh5ygn95lydjc";
+    sha256 = "0yi80gi2vb600n7wi6mk81zfdi1n5pg1dsz7458sb3z5cv5gj8yg";
   };
   buildInputs = [zlib openssl libre librem pkgconfig
     cairo mpg123 gstreamer gst-ffmpeg gst-plugins-base gst-plugins-bad gst-plugins-good

pkgs/applications/networking/instant-messengers/gajim/default.nix

@@ -25,30 +25,22 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   name = "gajim-${version}";
-  version = "0.16.6";
+  version = "0.16.7";
 
   src = fetchurl {
     name = "${name}.tar.bz2";
     url = "https://dev.gajim.org/gajim/gajim/repository/archive.tar.bz2?"
         + "ref=${name}";
-    sha256 = "1s0h4xll9490vh7ygmi4zsd1fa107f3s9ykhpq0snb04fllwhjq7";
+    sha256 = "18srrsswq09i54gcqqy0ylmrix1rrq43f0b8sz1lijr39h3ayw3j";
   };
 
   patches = let
     # An attribute set of revisions to apply from the upstream repository.
     cherries = {
-      misc-test-fixes = {
-        rev = "1f0d7387fd020df5dfc9a6349005ec7dedb7c008";
-        sha256 = "0nazpzyg50kl0k8z4dkn033933iz60g1i6nzhib1nmzhwwbnacc5";
-      };
-      jingle-fix = {
-        rev = "491d32a2ec13ed3a482e151e0b403eda7b4151b8";
-        sha256 = "1pfg1ysr0p6rcwmd8ikjs38av3c4gcxn8pxr6cnnj27n85gvi30g";
-      };
-      fix-connection-mock = {
-        rev = "46a19733d208fbd2404cbaeedd8c203d0b6557a4";
-        sha256 = "0l3s577pksnz16r4mqa1zmz4y165amsx2mclrm4vzlszy35rmy2b";
-      };
+      #example-fix = {
+      #  rev = "<replace-with-git-revsion>";
+      #  sha256 = "<replace-with-sha256>";
+      #};
     };
   in mapAttrsToList (name: { rev, sha256 }: fetchurl {
     name = "gajim-${name}.patch";

pkgs/applications/networking/instant-messengers/slack/default.nix

@@ -1,5 +1,5 @@
 { stdenv, fetchurl, dpkg
-, alsaLib, atk, cairo, cups, dbus, expat, fontconfig, freetype, glib, gnome2
+, alsaLib, atk, cairo, cups, curl, dbus, expat, fontconfig, freetype, glib, gnome2
 , libnotify, nspr, nss, systemd, xorg }:
 
 let
@@ -11,6 +11,7 @@ let
     atk
     cairo
     cups
+    curl
     dbus
     expat
     fontconfig

pkgs/applications/networking/msmtp/default.nix

@@ -1,5 +1,6 @@
 { stdenv, lib, fetchurl, autoreconfHook, pkgconfig
-, openssl, netcat, gnutls, gsasl, libidn, Security, systemd }:
+, openssl, netcat-gnu, gnutls, gsasl, libidn, Security
+, systemd ? null }:
 
 let
   tester = "n"; # {x| |p|P|n|s}
@@ -28,7 +29,7 @@ in stdenv.mkDerivation rec {
   postInstall = ''
     substitute scripts/msmtpq/msmtpq $out/bin/msmtpq \
       --replace @msmtp@      $out/bin/msmtp \
-      --replace @nc@         ${netcat}/bin/nc \
+      --replace @nc@         ${netcat-gnu}/bin/nc \
       --replace @journal@    ${journal} \
       ${lib.optionalString (journal == "y") "--replace @systemdcat@ ${systemd}/bin/systemd-cat" } \
       --replace @test@       ${tester}

pkgs/applications/networking/ostinato/default.nix

@@ -1,17 +1,19 @@
-{ stdenv, fetchgit, fetchurl, writeText
-, qt4, qmake4Hook, protobuf, libpcap
-, wireshark, gzip, diffutils, gawk
+{ stdenv, fetchFromGitHub, fetchurl, qmake4Hook, makeDesktopItem
+, qt4, protobuf, libpcap, wireshark, gzip, diffutils, gawk
 }:
 
 stdenv.mkDerivation rec {
-  name = "ostinato-2015-12-24";
-  src = fetchgit {
-    url = "https://github.com/pstavirs/ostinato.git";
-    rev = "414d89860de0987843295d149bcabeac7c6fd9e5";
-    sha256 = "1yif8z8ih027jdsgnxd82z9914wrqpkpi4xgxqv9lygnb2jjjrdx";
+  name    = "ostinato-${version}";
+  version = "0.8";
+
+  src = fetchFromGitHub  {
+    owner  = "pstavirs";
+    repo   = "ostinato";
+    rev    = "v${version}";
+    sha256 = "1b5a5gypcy9i03mj6md3lkrq05rqmdyhfykrr1z0sv8n3q48xca3";
   };
 
-  ostinato_png = fetchurl {
+  ostinatoIcon = fetchurl {
     url = "http://ostinato.org/images/site-logo.png";
     sha256 = "f5c067823f2934e4d358d76f65a343efd69ad783a7aeabd7ab4ce3cd03490d70";
   };
@@ -22,7 +24,27 @@ stdenv.mkDerivation rec {
 
   patches = [ ./drone_ini.patch ];
 
+  desktopItem = makeDesktopItem {
+    type          = "application";
+    name          = "ostinato";
+    desktopName   = "Ostinato";
+    genericName   = "Packet/Traffic Generator and Analyzer";
+    comment       = "Network packet and traffic generator and analyzer with a friendly GUI";
+    categories    = "Network";
+    terminal      = "false";
+    startupNotify = "true";
+    exec          = "$out/bin/ostinato";
+    icon          =  ostinatoIcon;
+    extraEntries  = ''
+      GenericName[it]=Generatore ed Analizzatore di pacchetti di rete
+      Comment[it]=Generatore ed Analizzatore di pacchetti di rete con interfaccia amichevole
+    '';
+  };
+
   postInstall = ''
+    mkdir -p $out/share/applications
+    ln -s ${desktopItem}/share/applications/* $out/share/applications/
+
     cat > $out/bin/ostinato.ini <<EOF
     WiresharkPath=${wireshark}/bin/wireshark
     TsharkPath=${wireshark}/bin/tshark
@@ -30,34 +52,13 @@ stdenv.mkDerivation rec {
     DiffPath=${diffutils}/bin/diff
     AwkPath=${gawk}/bin/awk
     EOF
-
-    mkdir -p $out/share/pixmaps
-    cp ${ostinato_png} $out/share/pixmaps/ostinato.png
-
-    # Create a desktop item.
-    mkdir -p $out/share/applications
-    cat > $out/share/applications/ostinato.desktop <<EOF
-    [Desktop Entry]
-    Type=Application
-    Encoding=UTF-8
-    Name=Ostinato
-    GenericName=Packet/Traffic Generator and Analyzer
-    GenericName[it]=Generatore ed Analizzatore di pacchetti di rete
-    Comment=Network packet and traffic generator and analyzer with a friendly GUI
-    Comment[it]=Generatore ed Analizzatore di pacchetti di rete con interfaccia amichevole
-    Icon=$out/share/pixmaps/ostinato.png
-    Exec=$out/bin/ostinato
-    Terminal=false
-    Categories=Network;
-    StartupNotify=true
-    EOF
   '';
 
   meta = with stdenv.lib; {
     description = "A packet traffic generator and analyzer";
-    homepage = http://ostinato.org;
-    license = licenses.gpl3;
+    homepage    = http://ostinato.org;
+    license     = licenses.gpl3;
     maintainers = with maintainers; [ rick68 ];
-    platforms = platforms.linux;  # also OS X and cygwin
+    platforms   = with platforms; linux ++ darwin ++ cygwin;
   };
 }

pkgs/applications/networking/syncthing/default.nix

@@ -6,14 +6,14 @@ let
   '';
 
 in stdenv.mkDerivation rec {
-  version = "0.14.23";
+  version = "0.14.24";
   name = "syncthing-${version}";
 
   src = fetchFromGitHub {
     owner  = "syncthing";
     repo   = "syncthing";
     rev    = "v${version}";
-    sha256 = "1himf8yhfpjsv5m068y2f6f696d7ip0jq7jmg69kn7035zlxicis";
+    sha256 = "15jjk49ibry7crc3sw5zg09zsm5ir0ph5c0f3acas66wd02rnvl1";
   };
 
   buildInputs = [ go ];

pkgs/applications/office/libreoffice/libreoffice-srcs-still.nix

@@ -112,11 +112,11 @@
     md5name = "1f467e5bb703f12cbbb09d5cf67ecf4a-converttexttonumber-1-5-0.oxt";
   }
   {
-    name = "curl-7.51.0.tar.gz";
-    url = "http://dev-www.libreoffice.org/src/curl-7.51.0.tar.gz";
-    sha256 = "65b5216a6fbfa72f547eb7706ca5902d7400db9868269017a8888aa91d87977c";
-    md5 = "490e19a8ccd1f4a244b50338a0eb9456";
-    md5name = "490e19a8ccd1f4a244b50338a0eb9456-curl-7.51.0.tar.gz";
+    name = "curl-7.52.1.tar.gz";
+    url = "http://dev-www.libreoffice.org/src/curl-7.52.1.tar.gz";
+    sha256 = "a8984e8b20880b621f61a62d95ff3c0763a3152093a9f9ce4287cfd614add6ae";
+    md5 = "4e1ef056e117b4d25f4ec42ac609c0d4";
+    md5name = "4e1ef056e117b4d25f4ec42ac609c0d4-curl-7.52.1.tar.gz";
   }
   {
     name = "libe-book-0.1.2.tar.bz2";

pkgs/applications/office/libreoffice/still-primary-src.nix

@@ -3,8 +3,8 @@
 rec {
   major = "5";
   minor = "2";
-  patch = "5";
-  tweak = "1";
+  patch = "6";
+  tweak = "2";
 
   subdir = "${major}.${minor}.${patch}";
 
@@ -12,6 +12,6 @@ rec {
 
   src = fetchurl {
     url = "http://download.documentfoundation.org/libreoffice/src/${subdir}/libreoffice-${version}.tar.xz";
-    sha256 = "006kn1m5d6c1skgc1scc0gssin922raca2psjv887alplhia6mlp";
+    sha256 = "0w1myl4l1qhdkwqb3b52xld1sq45xyg8b45q40l6a50iccwy6j9x";
   };
 }

pkgs/applications/office/libreoffice/still.nix

@@ -42,14 +42,14 @@ let
 
     translations = fetchSrc {
       name = "translations";
-      sha256 = "0lv3jbnzzkr7nbivsl9jm9b4m9mxvngbmhz6yasblhi0m9ifkxmb";
+      sha256 = "0w77mkxmhxx4qjwdwb8bipcdb4pkvkg202mxbbjrv0aj09k6dhvk";
     };
 
     # TODO: dictionaries
 
     help = fetchSrc {
       name = "help";
-      sha256 = "1d29ppdkhhy5x8cric0l872x607ng02bnp2gvv5ck3blb759q68i";
+      sha256 = "12xqzp005dhbh618g3zb30vj7rdmccdqj6ix10jlk0clk66n9kf0";
     };
 
   };

pkgs/applications/science/biology/bedtools/default.nix

@@ -0,0 +1,25 @@
+{stdenv, fetchFromGitHub, zlib, python}:
+
+stdenv.mkDerivation rec {
+  name = "bedtools-${version}";
+  version = "2.26.0";
+
+  src = fetchFromGitHub {
+    owner = "arq5x";
+    repo = "bedtools2";
+    rev = "v${version}";
+    sha256 = "1j2ia68rmcw3qksjm5gvv1cb84bh76vmln59mvncr2an23f5a3ss";
+  };
+
+  buildInputs = [ zlib python ];
+  buildPhase = "make prefix=$out SHELL=${stdenv.shell} -j $NIX_BUILD_CORES";
+  installPhase = "make prefix=$out SHELL=${stdenv.shell} install";
+
+  meta = with stdenv.lib; {
+    description = "A powerful toolset for genome arithmetic.";
+    license = licenses.gpl2;
+    homepage = https://bedtools.readthedocs.io/en/latest/;
+    maintainers = with maintainers; [ jbedo ];
+    platforms = platforms.unix;
+  };
+}

pkgs/applications/science/biology/picard-tools/default.nix

@@ -0,0 +1,30 @@
+{stdenv, fetchurl, jre, makeWrapper}:
+
+stdenv.mkDerivation rec {
+  name = "picard-tools-${version}";
+  version = "2.7.1";
+
+  src = fetchurl {
+    url = "https://github.com/broadinstitute/picard/releases/download/${version}/picard.jar";
+    sha256 = "0rcfcvy9zacqmh7nyqlm93hzsx6gfygmcf8d2p02h5l69gvygnb9";
+  };
+
+  buildInputs = [ jre makeWrapper ];
+
+  phases = [ "installPhase" ];
+
+  installPhase = ''
+    mkdir -p $out/libexec/picard
+    cp $src $out/libexec/picard/picard.jar
+    mkdir -p $out/bin
+    makeWrapper ${jre}/bin/java $out/bin/picard --add-flags "-jar $out/libexec/picard/picard.jar"
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Tools for high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.";
+    license = licenses.mit;
+    homepage = https://broadinstitute.github.io/picard/;
+    maintainers = with maintainers; [ jbedo ];
+    platforms = platforms.all;
+  };
+}

pkgs/applications/science/biology/platypus/default.nix

@@ -0,0 +1,38 @@
+{stdenv, fetchFromGitHub, python27, htslib, zlib, makeWrapper}:
+
+let python = python27.withPackages (ps: with ps; [ cython ]);
+
+in stdenv.mkDerivation rec {
+  name = "platypus-unstable-${version}";
+  version = "2017-03-07";
+
+  src = fetchFromGitHub {
+    owner = "andyrimmer";
+    repo = "Platypus";
+    rev = "cbbd914";
+    sha256 = "0xgj3pl7n4c12j5pp5qyjfk4rsvb5inwzrpcbhdf3br5f3mmdsb9";
+  };
+
+  buildInputs = [ htslib python zlib makeWrapper ];
+
+  buildPhase = ''
+    patchShebangs .
+    make
+  '';
+
+  installPhase = ''
+    mkdir -p $out/libexec/platypus
+    cp -r ./* $out/libexec/platypus
+
+    mkdir -p $out/bin
+    makeWrapper ${python}/bin/python $out/bin/platypus --add-flags "$out/libexec/platypus/bin/Platypus.py"
+  '';
+
+  meta = with stdenv.lib; {
+    description = "The Platypus variant caller";
+    license = licenses.gpl3;
+    homepage = https://github.com/andyrimmer/Platypus;
+    maintainers = with maintainers; [ jbedo ];
+    platforms = platforms.unix;
+  };
+}

pkgs/applications/science/biology/snpeff/default.nix

@@ -0,0 +1,31 @@
+{stdenv, fetchurl, jre, unzip, makeWrapper}:
+
+stdenv.mkDerivation rec {
+  name = "snpeff-${version}";
+  version = "4.3i";
+
+  src = fetchurl {
+    url = "mirror://sourceforge/project/snpeff/snpEff_latest_core.zip";
+    sha256 = "0i1slg201c8yjfr4wrg4xcgzwi0c8b9l3fb1i73fphq6q6zdblzb";
+  };
+
+  buildInputs = [ unzip jre makeWrapper ];
+
+  installPhase = ''
+    mkdir -p $out/libexec/snpeff
+    cp *.jar *.config $out/libexec/snpeff
+
+    mkdir -p $out/bin
+    makeWrapper ${jre}/bin/java $out/bin/snpeff --add-flags "-jar $out/libexec/snpeff/snpEff.jar"
+    makeWrapper ${jre}/bin/java $out/bin/snpsift --add-flags "-jar $out/libexec/snpeff/SnpSift.jar"
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Genetic variant annotation and effect prediction toolbox.";
+    license = licenses.lgpl3;
+    homepage = http://snpeff.sourceforge.net/;
+    maintainers = with maintainers; [ jbedo ];
+    platforms = platforms.all;
+  };
+
+}

pkgs/applications/science/biology/varscan/default.nix

@@ -0,0 +1,36 @@
+{stdenv, fetchurl, jre, makeWrapper}:
+
+stdenv.mkDerivation rec {
+  name = "varscan-${version}";
+  version = "2.4.2";
+
+  src = fetchurl {
+    url = "https://github.com/dkoboldt/varscan/releases/download/${version}/VarScan.v${version}.jar";
+    sha256 = "0cfhshinyqgwc6i7zf8lhbfybyly2x5anrz824zyvdhzz5i69zrl";
+  };
+
+  buildInputs = [ jre makeWrapper ];
+
+  phases = [ "installPhase" ];
+
+  installPhase = ''
+    mkdir -p $out/libexec/varscan
+    cp $src $out/libexec/varscan/varscan.jar
+    mkdir -p $out/bin
+    makeWrapper ${jre}/bin/java $out/bin/varscan --add-flags "-jar $out/libexec/varscan/varscan.jar"
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Variant calling and somatic mutation/CNV detection for next-generation sequencing data";
+    # VarScan 2 is free for non-commercial use by academic,
+    # government, and non-profit/not-for-profit institutions. A
+    # commercial version of the software is available, and licensed
+    # through the Office of Technology Management at Washington
+    # University School of Medicine.
+    license = licenses.unfree;
+    homepage = https://github.com/dkoboldt/varscan;
+    maintainers = with maintainers; [ jbedo ];
+    platforms = platforms.all;
+  };
+
+}

pkgs/applications/science/electronics/verilator/default.nix

@@ -12,6 +12,10 @@ stdenv.mkDerivation rec {
   enableParallelBuilding = true;
   buildInputs = [ perl flex_2_6_1 bison ];
 
+  postInstall = ''
+    sed -i -e '3a\#!/usr/bin/env perl' -e '1,3d' $out/bin/{verilator,verilator_coverage,verilator_profcfunc}
+  '';
+
   meta = {
     description = "Fast and robust (System)Verilog simulator/compiler";
     homepage    = "http://www.veripool.org/wiki/verilator";

pkgs/applications/science/misc/gplates/default.nix

@@ -1,5 +1,5 @@
 { stdenv, fetchurl, qt4, qwt6_qt4, mesa, glew, gdal_1_11, cgal
-, proj, boost159, cmake, python2, doxygen, graphviz, gmp }:
+, proj, boost, cmake, python2, doxygen, graphviz, gmp }:
 
 stdenv.mkDerivation rec {
   name = "gplates-${version}";
@@ -15,7 +15,7 @@ stdenv.mkDerivation rec {
   ];
 
   buildInputs = [
-    qt4 qwt6_qt4 mesa glew gdal_1_11 cgal proj boost159 cmake python2
+    qt4 qwt6_qt4 mesa glew gdal_1_11 cgal proj boost cmake python2
     doxygen graphviz gmp
   ];
 

pkgs/applications/version-management/gitkraken/default.nix

@@ -0,0 +1,74 @@
+{stdenv, lib, libXcomposite, libgnome_keyring, makeWrapper, udev, curl, alsaLib
+  ,libXfixes, atk, gtk2, libXrender, pango, gnome2, cairo, freetype, fontconfig
+  ,libX11, libXi, libXext, libXcursor, glib, libXScrnSaver, libxkbfile, libXtst
+  ,nss, nspr, cups, fetchurl, expat, gdk_pixbuf, libXdamage, libXrandr, dbus
+}:
+
+stdenv.mkDerivation rec {
+  name = "gitkraken-${version}";
+  version = "2.1.0";
+
+  src = fetchurl {
+    url = "https://release.gitkraken.com/linux/v${version}.tar.gz";
+    sha256 = "56b5657f5c13fa1d8f6b7b9331194cbc8c48c0b913e5f0fb561d0e9af82f7999";
+  };
+
+  libPath = stdenv.lib.makeLibraryPath [
+    stdenv.cc.cc.lib
+    curl
+    udev
+    libX11
+    libXext
+    libXcursor
+    libXi
+    glib
+    libXScrnSaver
+    libxkbfile
+    libXtst
+    nss
+    nspr
+    cups
+    alsaLib
+    expat
+    gdk_pixbuf
+    dbus
+    libXdamage
+    libXrandr
+    atk
+    pango
+    cairo
+    freetype
+    fontconfig
+    libXcomposite
+    libXfixes
+    libXrender
+    gtk2
+    gnome2.GConf
+    libgnome_keyring
+  ];
+
+  phases = [ "unpackPhase" "installPhase" ];
+
+  buildInputs = [ makeWrapper ];
+
+  installPhase = ''
+    mkdir -p "$out/opt/gitkraken"
+    cp -r ./* "$out/opt/gitkraken"
+    fixupPhase
+    patchelf --set-interpreter $(cat $NIX_CC/nix-support/dynamic-linker) \
+             --set-rpath "$libPath:$out/opt/gitkraken" "$out/opt/gitkraken/gitkraken"
+    wrapProgram $out/opt/gitkraken/gitkraken \
+      --prefix LD_PRELOAD : "${stdenv.lib.makeLibraryPath [ curl ]}/libcurl.so.4" \
+      --prefix LD_PRELOAD : "${stdenv.lib.makeLibraryPath [ libgnome_keyring ]}/libgnome-keyring.so.0"
+    mkdir "$out/bin"
+    ln -s "$out/opt/gitkraken/gitkraken" "$out/bin/gitkraken"
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://www.gitkraken.com/;
+    description = "The downright luxurious and most popular Git client for Windows, Mac & Linux";
+    license = licenses.unfree;
+    platforms = platforms.linux;
+    maintainers = [ ];
+  };
+}

pkgs/applications/video/smplayer/default.nix

@@ -1,11 +1,11 @@
 { stdenv, fetchurl, qmakeHook, qtscript }:
 
 stdenv.mkDerivation rec {
-  name = "smplayer-17.2.0";
+  name = "smplayer-17.3.0";
 
   src = fetchurl {
     url = "mirror://sourceforge/smplayer/${name}.tar.bz2";
-    sha256 = "05nqwpyh3zlyzip7chs711sz97cgijb92h44cd5aqbwbx06hihdd";
+    sha256 = "0yv7725kr3dq02mcanc07sapirx6s73l4b6d13nzvq5rkwr8crmj";
   };
 
   buildInputs = [ qtscript ];

pkgs/applications/virtualization/qemu/default.nix

@@ -9,7 +9,9 @@
 , pulseSupport ? !stdenv.isDarwin, libpulseaudio
 , sdlSupport ? !stdenv.isDarwin, SDL
 , vncSupport ? true, libjpeg, libpng
-, spiceSupport ? !stdenv.isDarwin, spice, spice_protocol, usbredir
+, spiceSupport ? !stdenv.isDarwin, spice, spice_protocol
+, usbredirSupport ? spiceSupport, usbredir
+, xenSupport ? false, xen
 , x86Only ? false
 , nixosTestRunner ? false
 }:
@@ -24,6 +26,7 @@ in
 
 stdenv.mkDerivation rec {
   name = "qemu-"
+    + stdenv.lib.optionalString xenSupport "xen-"
     + stdenv.lib.optionalString x86Only "x86-only-"
     + stdenv.lib.optionalString nixosTestRunner "for-vm-tests-"
     + version;
@@ -44,8 +47,10 @@ stdenv.mkDerivation rec {
     ++ optionals pulseSupport [ libpulseaudio ]
     ++ optionals sdlSupport [ SDL ]
     ++ optionals vncSupport [ libjpeg libpng ]
-    ++ optionals spiceSupport [ spice_protocol spice usbredir ]
-    ++ optionals stdenv.isLinux [ alsaLib libaio libcap_ng libcap attr ];
+    ++ optionals spiceSupport [ spice_protocol spice ]
+    ++ optionals usbredirSupport [ usbredir ]
+    ++ optionals stdenv.isLinux [ alsaLib libaio libcap_ng libcap attr ]
+    ++ optionals xenSupport [ xen ];
 
   enableParallelBuilding = true;
 
@@ -95,9 +100,11 @@ stdenv.mkDerivation rec {
     ++ optional numaSupport "--enable-numa"
     ++ optional seccompSupport "--enable-seccomp"
     ++ optional spiceSupport "--enable-spice"
+    ++ optional usbredirSupport "--enable-usb-redir"
     ++ optional x86Only "--target-list=i386-softmmu,x86_64-softmmu"
     ++ optional stdenv.isDarwin "--enable-cocoa"
-    ++ optional stdenv.isLinux "--enable-linux-aio";
+    ++ optional stdenv.isLinux "--enable-linux-aio"
+    ++ optional xenSupport "--enable-xen";
 
   postFixup =
     ''

pkgs/applications/virtualization/xen/0000-fix-install-python.patch

@@ -0,0 +1,16 @@
+tools/python/install-wrap script brakes shebangs patching, disable
+
+diff --git a/tools/Rules.mk b/tools/Rules.mk
+index 87a56dc..a7da869 100644
+--- a/tools/Rules.mk
++++ b/tools/Rules.mk
+@@ -90,8 +90,7 @@ CFLAGS += $(CFLAGS-y)
+ 
+ CFLAGS += $(EXTRA_CFLAGS_XEN_TOOLS)
+ 
+-INSTALL_PYTHON_PROG = \
+-	$(XEN_ROOT)/tools/python/install-wrap "$(PYTHON_PATH)" $(INSTALL_PROG)
++INSTALL_PYTHON_PROG = $(INSTALL_PROG)
+ 
+ %.opic: %.c
+ 	$(CC) $(CPPFLAGS) -DPIC $(CFLAGS) $(CFLAGS_$*.opic) -fPIC -c -o $@ $< $(APPEND_CFLAGS)

pkgs/applications/virtualization/xen/0000-fix-ipxe-src.patch

@@ -0,0 +1,27 @@
+hack to make etherboot use prefetched ipxe
+
+diff --git a/tools/firmware/etherboot/Makefile b/tools/firmware/etherboot/Makefile
+index a0578d2..64428a0 100644
+--- a/tools/firmware/etherboot/Makefile
++++ b/tools/firmware/etherboot/Makefile
+@@ -16,6 +16,7 @@ IPXE_TARBALL_URL ?= $(XEN_EXTFILES_URL)/ipxe-git-$(IPXE_GIT_TAG).tar.gz
+ 
+ D=ipxe
+ T=ipxe.tar.gz
++G=ipxe.git
+ 
+ ROMS = $(addprefix $D/src/bin/, $(addsuffix .rom, $(ETHERBOOT_NICS)))
+ 
+@@ -36,9 +37,9 @@ $T:
+ 	fi
+ 	mv _$T $T
+ 
+-$D/src/arch/i386/Makefile: $T Config
+-	rm -rf $D
+-	gzip -dc $T | tar xf -
++$D/src/arch/i386/Makefile: $G Config
++	mkdir $D
++	cp -a $G/* $D
+ 	for i in $$(cat patches/series) ; do                 \
+ 	    patch -d $D -p1 --quiet <patches/$$i || exit 1 ; \
+ 	done

pkgs/applications/virtualization/xen/4.5.nix

@@ -1,152 +1,237 @@
-{ callPackage, fetchurl, fetchpatch, fetchgit, ... } @ args:
+{ stdenv, callPackage, fetchurl, fetchpatch, fetchgit
+, withInternalQemu ? true
+, withInternalTraditionalQemu ? true
+, withInternalSeabios ? true
+, withSeabios ? !withInternalSeabios, seabios ? null
+, withInternalOVMF ? false # FIXME: tricky to build
+, withOVMF ? false, OVMF
+, withLibHVM ? true
+
+# qemu
+, udev, pciutils, xorg, SDL, pixman, acl, glusterfs, spice_protocol, usbredir
+, alsaLib
+, ... } @ args:
+
+assert withInternalSeabios -> !withSeabios;
+assert withInternalOVMF -> !withOVMF;
+
+with stdenv.lib;
+
+# Patching XEN? Check the XSAs at
+# https://xenbits.xen.org/xsa/
+# and try applying all the ones we don't have yet.
 
 let
-  # Xen 4.5.5
-  #
-  # Patching XEN? Check the XSAs and try applying all the ones we
-  # don't have yet.
-  #
-  # XSAs at: https://xenbits.xen.org/xsa/
-  xenConfig = rec {
-    version = "4.5.5";
+  xsaPatch = { name , sha256 }: (fetchpatch {
+    url = "https://xenbits.xen.org/xsa/xsa${name}.patch";
+    inherit sha256;
+  });
 
-    xsaPatch = { name , sha256 }: (fetchpatch {
-      url = "https://xenbits.xen.org/xsa/xsa${name}.patch";
-      inherit sha256;
-    });
+  qemuDeps = [
+    udev pciutils xorg.libX11 SDL pixman acl glusterfs spice_protocol usbredir
+    alsaLib
+  ];
+in
 
-    name = "xen-${version}";
+callPackage (import ./generic.nix (rec {
+  version = "4.5.5";
 
-    src = fetchurl {
-      url = "http://bits.xensource.com/oss-xen/release/${version}/${name}.tar.gz";
-      sha256 = "1y74ms4yc3znf8jc3fgyq94va2y0pf7jh8m9pfqnpgklywqnw8g2";
-    };
-
-    # Sources needed to build the xen tools and tools/firmware.
-    firmwareGits =
-      [
-        { git = { name = "seabios";
-                  url = https://xenbits.xen.org/git-http/seabios.git;
-                  rev = "rel-1.7.5";
-                  sha256 = "0jk54ybhmw97pzyhpm6jr2x99f702kbn0ipxv5qxcbynflgdazyb";
-                };
-          patches = [ ./0000-qemu-seabios-enable-ATA_DMA.patch ];
-        }
-      ];
-
-    toolsGits =
-      [
-        { git = { name = "qemu-xen";
-                  url = https://xenbits.xen.org/git-http/qemu-xen.git;
-                  rev = "refs/tags/qemu-xen-${version}";
-                  sha256 = "014s755slmsc7xzy7qhk9i3kbjr2grxb5yznjp71dl6xxfvnday2";
-                };
-          patches = [
-            (xsaPatch {
-              name = "197-4.5-qemuu";
-              sha256 = "09gp980qdlfpfmxy0nk7ncyaa024jnrpzx9gpq2kah21xygy5myx";
-            })
-            (xsaPatch {
-              name = "208-qemuu-4.7";
-              sha256 = "0z9b1whr8rp2riwq7wndzcnd7vw1ckwx0vbk098k2pcflrzppgrb";
-            })
-            (xsaPatch {
-              name = "209-qemuu";
-              sha256 = "05df4165by6pzxrnizkw86n2f77k9i1g4fqqpws81ycb9ng4jzin";
-            })
-          ];
-        }
-        { git = { name = "qemu-xen-traditional";
-                  url = https://xenbits.xen.org/git-http/qemu-xen-traditional.git;
-                  # rev = "28c21388c2a32259cff37fc578684f994dca8c9f";
-                  rev = "refs/tags/xen-${version}";
-                  sha256 = "0n0ycxlf1wgdjkdl8l2w1i0zzssk55dfv67x8i6b2ima01r0k93r";
-                };
-          patches = [
-            (xsaPatch {
-              name = "197-4.5-qemut";
-              sha256 = "17l7npw00gyhqzzaqamwm9cawfvzm90zh6jjyy95dmqbh7smvy79";
-            })
-            (xsaPatch {
-              name = "199-trad";
-              sha256 = "0dfw6ciycw9a9s97sbnilnzhipnzmdm9f7xcfngdjfic8cqdcv42";
-            })
-            (xsaPatch {
-              name = "208-qemut";
-              sha256 = "0960vhchixp60j9h2lawgbgzf6mpcdk440kblk25a37bd6172l54";
-            })
-            (xsaPatch {
-              name = "209-qemut";
-              sha256 = "1hq8ghfzw6c47pb5vf9ngxwgs8slhbbw6cq7gk0nam44rwvz743r";
-            })
-          ];
-        }
-        { git = { name = "xen-libhvm";
-                  url = https://github.com/ts468/xen-libhvm;
-                  rev = "442dcc4f6f4e374a51e4613532468bd6b48bdf63";
-                  sha256 = "9ba97c39a00a54c154785716aa06691d312c99be498ebbc00dc3769968178ba8";
-                };
-          description = ''
-            Helper library for reading ACPI and SMBIOS firmware values
-            from the host system for use with the HVM guest firmware
-            pass-through feature in Xen.
-            '';
-          #license = licenses.bsd2;
-        }
-      ];
-
-      xenPatches = [ ./0001-libxl-Spice-image-compression-setting-support-for-up.patch
-                     ./0002-libxl-Spice-streaming-video-setting-support-for-upst.patch
-                     ./0003-Add-qxl-vga-interface-support-for-upstream-qem.patch
-                     (xsaPatch {
-                       name = "190-4.5";
-                       sha256 = "0f8pw38kkxky89ny3ic5h26v9zsjj9id89lygx896zc3w1klafqm";
-                     })
-                     (xsaPatch {
-                       name = "191-4.6";
-                       sha256 = "1wl1ndli8rflmc44pkp8cw4642gi8z7j7gipac8mmlavmn3wdqhg";
-                     })
-                     (xsaPatch {
-                       name = "192-4.5";
-                       sha256 = "0m8cv0xqvx5pdk7fcmaw2vv43xhl62plyx33xqj48y66x5z9lxpm";
-                     })
-                     (xsaPatch {
-                       name = "193-4.5";
-                       sha256 = "0k9mykhrpm4rbjkhv067f6s05lqmgnldcyb3vi8cl0ndlyh66lvr";
-                     })
-                     (xsaPatch {
-                       name = "195";
-                       sha256 = "0m0g953qnjy2knd9qnkdagpvkkgjbk3ydgajia6kzs499dyqpdl7";
-                     })
-                     (xsaPatch {
-                       name = "196-0001-x86-emul-Correct-the-IDT-entry-calculation-in-inject";
-                       sha256 = "0z53nzrjvc745y26z1qc8jlg3blxp7brawvji1hx3s74n346ssl6";
-                     })
-                     (xsaPatch {
-                       name = "196-0002-x86-svm-Fix-injection-of-software-interrupts";
-                       sha256 = "11cqvr5jn2s92wsshpilx9qnfczrd9hnyb5aim6qwmz3fq3hrrkz";
-                     })
-                     (xsaPatch {
-                       name = "198";
-                       sha256 = "0d1nndn4p520c9xa87ixnyks3mrvzcri7c702d6mm22m8ansx6d9";
-                     })
-                     (xsaPatch {
-                       name = "200-4.6";
-                       sha256 = "0k918ja83470iz5k4vqi15293zjvz2dipdhgc9sy9rrhg4mqncl7";
-                     })
-                     (xsaPatch {
-                       name = "202-4.6";
-                       sha256 = "0nnznkrvfbbc8z64dr9wvbdijd4qbpc0wz2j5vpmx6b32sm7932f";
-                     })
-                     (xsaPatch {
-                       name = "204-4.5";
-                       sha256 = "083z9pbdz3f532fnzg7n2d5wzv6rmqc0f4mvc3mnmkd0rzqw8vcp";
-                     })
-                     (xsaPatch {
-                       name = "207";
-                       sha256 = "0wdlhijmw9mdj6a82pyw1rwwiz605dwzjc392zr3fpb2jklrvibc";
-                     })
-                   ];
+  src = fetchurl {
+    url = "http://bits.xensource.com/oss-xen/release/${version}/xen-${version}.tar.gz";
+    sha256 = "1y74ms4yc3znf8jc3fgyq94va2y0pf7jh8m9pfqnpgklywqnw8g2";
   };
 
-in callPackage ./generic.nix (args // { xenConfig=xenConfig; })
+  # Sources needed to build tools and firmwares.
+  xenfiles = optionalAttrs withInternalQemu {
+    "qemu-xen" = {
+      src = fetchgit {
+        url = https://xenbits.xen.org/git-http/qemu-xen.git;
+        rev = "refs/tags/qemu-xen-${version}";
+        sha256 = "014s755slmsc7xzy7qhk9i3kbjr2grxb5yznjp71dl6xxfvnday2";
+      };
+      buildInputs = qemuDeps;
+      patches = [
+        (xsaPatch {
+          name = "197-4.5-qemuu";
+          sha256 = "09gp980qdlfpfmxy0nk7ncyaa024jnrpzx9gpq2kah21xygy5myx";
+        })
+        (xsaPatch {
+          name = "208-qemuu-4.7";
+          sha256 = "0z9b1whr8rp2riwq7wndzcnd7vw1ckwx0vbk098k2pcflrzppgrb";
+        })
+        (xsaPatch {
+          name = "209-qemuu/0001-display-cirrus-ignore-source-pitch-value-as-needed-i";
+          sha256 = "1xvxzsrsq05fj6szjlpbgg4ia3cw54dn5g7xzq1n1dymbhv606m0";
+        })
+        (xsaPatch {
+          name = "209-qemuu/0002-cirrus-add-blit_is_unsafe-call-to-cirrus_bitblt_cput";
+          sha256 = "0avxqs9922qjfsxxlk7bh10432a526j2yyykhags8dk1bzxkpxwv";
+        })
+      ];
+      meta.description = "Xen's fork of upstream Qemu";
+    };
+  } // optionalAttrs withInternalTraditionalQemu {
+    "qemu-xen-traditional" = {
+      src = fetchgit {
+        url = https://xenbits.xen.org/git-http/qemu-xen-traditional.git;
+        rev = "refs/tags/xen-${version}";
+        sha256 = "0n0ycxlf1wgdjkdl8l2w1i0zzssk55dfv67x8i6b2ima01r0k93r";
+      };
+      buildInputs = qemuDeps;
+      patches = [
+        (xsaPatch {
+          name = "197-4.5-qemut";
+          sha256 = "17l7npw00gyhqzzaqamwm9cawfvzm90zh6jjyy95dmqbh7smvy79";
+        })
+        (xsaPatch {
+          name = "199-trad";
+          sha256 = "0dfw6ciycw9a9s97sbnilnzhipnzmdm9f7xcfngdjfic8cqdcv42";
+        })
+        (xsaPatch {
+          name = "208-qemut";
+          sha256 = "0960vhchixp60j9h2lawgbgzf6mpcdk440kblk25a37bd6172l54";
+        })
+        (xsaPatch {
+          name = "209-qemut";
+          sha256 = "1hq8ghfzw6c47pb5vf9ngxwgs8slhbbw6cq7gk0nam44rwvz743r";
+        })
+      ];
+      postPatch = ''
+        substituteInPlace xen-hooks.mak \
+          --replace /usr/include/pci ${pciutils}/include/pci
+      '';
+      meta.description = "Xen's fork of upstream Qemu that uses old device model";
+    };
+  } // optionalAttrs withInternalSeabios {
+    "firmware/seabios-dir-remote" = {
+      src = fetchgit {
+        url = https://xenbits.xen.org/git-http/seabios.git;
+        rev = "e51488c5f8800a52ac5c8da7a31b85cca5cc95d2";
+        #rev = "rel-1.7.5";
+        sha256 = "0jk54ybhmw97pzyhpm6jr2x99f702kbn0ipxv5qxcbynflgdazyb";
+      };
+      patches = [ ./0000-qemu-seabios-enable-ATA_DMA.patch ];
+      meta.description = "Xen's fork of Seabios";
+    };
+  } // optionalAttrs withInternalOVMF {
+    "firmware/ovmf-dir-remote" = {
+      src = fetchgit {
+        url = https://xenbits.xen.org/git-http/ovmf.git;
+        rev = "cb9a7ebabcd6b8a49dc0854b2f9592d732b5afbd";
+        sha256 = "07zmdj90zjrzip74fvd4ss8n8njk6cim85s58mc6snxmqqv7gmcq";
+      };
+      meta.description = "Xen's fork of OVMF";
+    };
+  } // {
+    # TODO: patch Xen to make this optional?
+    "firmware/etherboot/ipxe.git" = {
+      src = fetchgit {
+        url = https://git.ipxe.org/ipxe.git;
+        rev = "9a93db3f0947484e30e753bbd61a10b17336e20e";
+        sha256 = "1ga3h1b34q0cl9azj7j9nswn7mfcs3cgfjdihrm5zkp2xw2hpvr6";
+      };
+      meta.description = "Xen's fork of iPXE";
+    };
+  } // optionalAttrs withLibHVM {
+    "xen-libhvm-dir-remote" = {
+      src = fetchgit {
+        name = "xen-libhvm";
+        url = https://github.com/ts468/xen-libhvm;
+        rev = "442dcc4f6f4e374a51e4613532468bd6b48bdf63";
+        sha256 = "9ba97c39a00a54c154785716aa06691d312c99be498ebbc00dc3769968178ba8";
+      };
+      buildPhase = ''
+        make
+        cd biospt
+        cc -Wall -g -D_LINUX -Wstrict-prototypes biospt.c -o biospt -I../libhvm -L../libhvm -lxenhvm
+      '';
+      installPhase = ''
+        make install
+        cp biospt/biospt $out/bin/
+      '';
+      meta = {
+        description = ''
+          Helper library for reading ACPI and SMBIOS firmware values
+          from the host system for use with the HVM guest firmware
+          pass-through feature in Xen'';
+        license = licenses.bsd2;
+      };
+    };
+  };
+
+  configureFlags = []
+    ++ optional (!withInternalQemu) "--with-system-qemu" # use qemu from PATH
+    ++ optional (withInternalTraditionalQemu) "--enable-qemu-traditional"
+    ++ optional (!withInternalTraditionalQemu) "--disable-qemu-traditional"
+
+    ++ optional (withSeabios) "--with-system-seabios=${seabios}"
+    ++ optional (!withInternalSeabios && !withSeabios) "--disable-seabios"
+
+    ++ optional (withOVMF) "--with-system-ovmf=${OVMF}"
+    ++ optional (withInternalOVMF) "--enable-ovmf";
+
+  patches =
+    [ ./0001-libxl-Spice-image-compression-setting-support-for-up.patch
+      ./0002-libxl-Spice-streaming-video-setting-support-for-upst.patch
+      ./0003-Add-qxl-vga-interface-support-for-upstream-qem.patch
+      (xsaPatch {
+        name = "190-4.5";
+        sha256 = "0f8pw38kkxky89ny3ic5h26v9zsjj9id89lygx896zc3w1klafqm";
+      })
+      (xsaPatch {
+        name = "191-4.6";
+        sha256 = "1wl1ndli8rflmc44pkp8cw4642gi8z7j7gipac8mmlavmn3wdqhg";
+      })
+      (xsaPatch {
+        name = "192-4.5";
+        sha256 = "0m8cv0xqvx5pdk7fcmaw2vv43xhl62plyx33xqj48y66x5z9lxpm";
+      })
+      (xsaPatch {
+        name = "193-4.5";
+        sha256 = "0k9mykhrpm4rbjkhv067f6s05lqmgnldcyb3vi8cl0ndlyh66lvr";
+      })
+      (xsaPatch {
+        name = "195";
+        sha256 = "0m0g953qnjy2knd9qnkdagpvkkgjbk3ydgajia6kzs499dyqpdl7";
+      })
+      (xsaPatch {
+        name = "196-0001-x86-emul-Correct-the-IDT-entry-calculation-in-inject";
+        sha256 = "0z53nzrjvc745y26z1qc8jlg3blxp7brawvji1hx3s74n346ssl6";
+      })
+      (xsaPatch {
+        name = "196-0002-x86-svm-Fix-injection-of-software-interrupts";
+        sha256 = "11cqvr5jn2s92wsshpilx9qnfczrd9hnyb5aim6qwmz3fq3hrrkz";
+      })
+      (xsaPatch {
+        name = "198";
+        sha256 = "0d1nndn4p520c9xa87ixnyks3mrvzcri7c702d6mm22m8ansx6d9";
+      })
+      (xsaPatch {
+        name = "200-4.6";
+        sha256 = "0k918ja83470iz5k4vqi15293zjvz2dipdhgc9sy9rrhg4mqncl7";
+      })
+      (xsaPatch {
+        name = "202-4.6";
+        sha256 = "0nnznkrvfbbc8z64dr9wvbdijd4qbpc0wz2j5vpmx6b32sm7932f";
+      })
+      (xsaPatch {
+        name = "204-4.5";
+        sha256 = "083z9pbdz3f532fnzg7n2d5wzv6rmqc0f4mvc3mnmkd0rzqw8vcp";
+      })
+      (xsaPatch {
+        name = "207";
+        sha256 = "0wdlhijmw9mdj6a82pyw1rwwiz605dwzjc392zr3fpb2jklrvibc";
+      })
+    ];
+
+  # Fix build on Glibc 2.24.
+  NIX_CFLAGS_COMPILE = "-Wno-error=deprecated-declarations";
+
+  postPatch = ''
+    # Avoid a glibc >= 2.25 deprecation warnings that get fatal via -Werror.
+    sed 1i'#include <sys/sysmacros.h>' \
+      -i tools/blktap2/control/tap-ctl-allocate.c \
+      -i tools/libxl/libxl_device.c
+  '';
+
+})) args

pkgs/applications/virtualization/xen/generic.nix

@@ -1,188 +1,219 @@
-{ stdenv, fetchurl, which, zlib, pkgconfig, SDL, openssl
-, libuuid, gettext, ncurses, dev86, iasl, pciutils, bzip2
-, lvm2, utillinux, procps, texinfo, perl, python2Packages
-, glib, bridge-utils, xorg, pixman, iproute, udev, bison
-, flex, cmake, ocamlPackages, figlet, libaio, yajl
-, checkpolicy, transfig, glusterfs, acl, fetchgit, xz, spice
-, spice_protocol, usbredir, alsaLib, quilt
+config:
+{ stdenv, cmake, pkgconfig, which
+
+# Xen
+, bison, bzip2, checkpolicy, dev86, figlet, flex, gettext, glib
+, iasl, libaio, libiconv, libuuid, ncurses, openssl, perl
+, python2Packages
+# python2Packages.python
+, xz, yajl, zlib
+
+# Xen Optional
+, ocamlPackages
+
+# Scripts
 , coreutils, gawk, gnused, gnugrep, diffutils, multipath-tools
-, inetutils, iptables, openvswitch, nbd, drbd, xenConfig
-, xenserverPatched ? false, ... }:
+, iproute, inetutils, iptables, bridge-utils, openvswitch, nbd, drbd
+, lvm2, utillinux, procps
+
+# Documentation
+# python2Packages.markdown
+, transfig, ghostscript, texinfo, pandoc
+
+, ...} @ args:
 
 with stdenv.lib;
 
 let
+  #TODO: fix paths instead
+  scriptEnvPath = concatMapStringsSep ":" (x: "${x}/bin") [
+    which perl
+    coreutils gawk gnused gnugrep diffutils utillinux multipath-tools
+    iproute inetutils iptables bridge-utils openvswitch nbd drbd
+  ];
 
-  libDir = if stdenv.is64bit then "lib64" else "lib";
+  withXenfiles = f: concatStringsSep "\n" (mapAttrsToList f config.xenfiles);
 
-  # Sources needed to build the tools
-  # These sources are already rather old and probably do not change frequently
-  xenExtfiles = [
-      { url = http://xenbits.xensource.com/xen-extfiles/ipxe-git-9a93db3f0947484e30e753bbd61a10b17336e20e.tar.gz;
-        sha256 = "0p206zaxlhda60ci33h9gipi5gm46fvvsm6k5c0w7b6cjg0yhb33";
-      }
-    ];
-
-  scriptEnvPath = stdenv.lib.concatStrings (stdenv.lib.intersperse ":" (map (x: "${x}/bin")
-    [ coreutils gawk gnused gnugrep which perl diffutils utillinux multipath-tools
-      iproute inetutils iptables bridge-utils openvswitch nbd drbd ]));
+  withTools = a: f: withXenfiles (name: x: optionalString (hasAttr a x) ''
+    echo "processing ${name}"
+    __do() {
+      cd "tools/${name}"
+      ${f name x}
+    }
+    ( __do )
+  '');
 in
 
+stdenv.mkDerivation (rec {
+  inherit (config) version;
 
-
-stdenv.mkDerivation {
-  inherit (xenConfig) name version src;
+  name = "xen-${version}";
 
   dontUseCmakeConfigure = true;
 
-  buildInputs =
-    [ which zlib pkgconfig SDL openssl libuuid gettext ncurses
-      dev86 iasl pciutils bzip2 xz texinfo perl yajl
-      python2Packages.python python2Packages.wrapPython
-      glib bridge-utils pixman iproute udev bison xorg.libX11
-      flex ocamlPackages.ocaml ocamlPackages.findlib figlet libaio
-      checkpolicy python2Packages.markdown transfig
-      glusterfs acl cmake spice spice_protocol usbredir
-      alsaLib quilt
-    ];
-
   hardeningDisable = [ "stackprotector" "fortify" "pic" ];
 
-  patches = stdenv.lib.optionals ((xenserverPatched == false) && (builtins.hasAttr "xenPatches" xenConfig)) xenConfig.xenPatches;
+  buildInputs = [
+    cmake pkgconfig which
+
+    # Xen
+    bison bzip2 checkpolicy dev86 figlet flex gettext glib iasl libaio
+    libiconv libuuid ncurses openssl perl python2Packages.python xz yajl zlib
+
+    # oxenstored
+    ocamlPackages.findlib ocamlPackages.ocaml
+
+    # Python fixes
+    python2Packages.wrapPython
+
+    # Documentation
+    python2Packages.markdown transfig ghostscript texinfo pandoc
+
+    # Others
+  ] ++ (concatMap (x: x.buildInputs or []) (attrValues config.xenfiles))
+    ++ (config.buildInputs or []);
+
+  prePatch = ''
+    ### Generic fixes
+
+    # Xen's stubdoms, tools and firmwares need various sources that
+    # are usually fetched at build time using wget and git. We can't
+    # have that, so we prefetch them in nix-expression and setup
+    # fake wget and git for debugging purposes.
+
+    mkdir fake-bin
+
+    # Fake git: just print what it wants and die
+    cat > fake-bin/wget << EOF
+    #!/bin/sh -e
+    echo ===== FAKE WGET: Not fetching \$*
+    [ -e \$3 ]
+    EOF
+
+    # Fake git: just print what it wants and die
+    cat > fake-bin/git << EOF
+    #!/bin/sh
+    echo ===== FAKE GIT: Not cloning \$*
+    [ -e \$3 ]
+    EOF
+
+    chmod +x fake-bin/*
+    export PATH=$PATH:$PWD/fake-bin
+
+    # Remove in-tree qemu stuff in case we build from a tar-ball
+    rm -rf tools/qemu-xen tools/qemu-xen-traditional
+
+    # Fix shebangs, mainly for build-scipts
+    # We want to do this before getting prefetched stuff to speed things up
+    # (prefetched stuff has lots of files)
+    find . -type f | xargs sed -i 's@/usr/bin/\(python\|perl\)@/usr/bin/env \1@g'
+    find . -type f | xargs sed -i 's@/bin/bash@/bin/sh@g'
+
+    # Get prefetched stuff
+    ${withXenfiles (name: x: ''
+      echo "${x.src} -> tools/${name}"
+      cp -r ${x.src} tools/${name}
+      chmod -R +w tools/${name}
+    '')}
+  '';
+
+  patches = [ ./0000-fix-ipxe-src.patch
+              ./0000-fix-install-python.patch ]
+         ++ (config.patches or []);
 
   postPatch = ''
-      ${stdenv.lib.optionalString ((xenserverPatched == true) && (builtins.hasAttr "xenserverPatches" xenConfig)) xenConfig.xenserverPatches}
+    ### Hacks
 
-      # Xen's tools and firmares need various git repositories that it
-      # usually checks out at time using git.  We can't have that.
-      ${flip concatMapStrings xenConfig.toolsGits (x: let src = fetchgit x.git; in ''
-        cp -r ${src} tools/${src.name}-dir-remote
-        chmod -R +w tools/${src.name}-dir-remote
-      '' + stdenv.lib.optionalString (builtins.hasAttr "patches" x) ''
-        ( cd tools/${src.name}-dir-remote; ${concatStringsSep "; " (map (p: "patch -p1 < ${p}") x.patches)} )
-      '')}
-      ${flip concatMapStrings xenConfig.firmwareGits (x: let src = fetchgit x.git; in ''
-        cp -r ${src} tools/firmware/${src.name}-dir-remote
-        chmod -R +w tools/firmware/${src.name}-dir-remote
-      '' + stdenv.lib.optionalString (builtins.hasAttr "patches" x) ''
-        ( cd tools/firmware/${src.name}-dir-remote; ${concatStringsSep "; " (map (p: "patch -p1 < ${p}") x.patches)} )
-      '')}
+    # Work around a bug in our GCC wrapper: `gcc -MF foo -v' doesn't
+    # print the GCC version number properly.
+    substituteInPlace xen/Makefile \
+      --replace '$(CC) $(CFLAGS) -v' '$(CC) -v'
 
-      # Xen's stubdoms and firmwares need various sources that are usually fetched
-      # at build time using wget. We can't have that, so we prefetch Xen's ext_files.
-      mkdir xen_ext_files
-      ${flip concatMapStrings xenExtfiles (x: let src = fetchurl x; in ''
-        cp ${src} xen_ext_files/${src.name}
-      '')}
+    # Hack to get `gcc -m32' to work without having 32-bit Glibc headers.
+    mkdir -p tools/include/gnu
+    touch tools/include/gnu/stubs-32.h
 
-      # Avoid a glibc >= 2.25 deprecation warnings that get fatal via -Werror.
-      sed 1i'#include <sys/sysmacros.h>' \
-        -i tools/blktap2/control/tap-ctl-allocate.c \
-        -i tools/libxl/libxl_device.c
+    ### Fixing everything else
+
+    substituteInPlace tools/libfsimage/common/fsimage_plugin.c \
+      --replace /usr $out
+
+    substituteInPlace tools/blktap2/lvm/lvm-util.c \
+      --replace /usr/sbin/vgs ${lvm2}/bin/vgs \
+      --replace /usr/sbin/lvs ${lvm2}/bin/lvs
+
+    substituteInPlace tools/misc/xenpvnetboot \
+      --replace /usr/sbin/mount ${utillinux}/bin/mount \
+      --replace /usr/sbin/umount ${utillinux}/bin/umount
+
+    substituteInPlace tools/xenmon/xenmon.py \
+      --replace /usr/bin/pkill ${procps}/bin/pkill
+
+    substituteInPlace tools/xenstat/Makefile \
+      --replace /usr/include/curses.h ${ncurses.dev}/include/curses.h
+
+    # TODO: use this as a template and support our own if-up scripts instead?
+    substituteInPlace tools/hotplug/Linux/xen-backend.rules.in \
+      --replace "@XEN_SCRIPT_DIR@" $out/etc/xen/scripts
+
+    # blktap is not provided by xen, but by xapi
+    sed -i '/blktap/d' tools/hotplug/Linux/xen-backend.rules.in
+
+    ${withTools "patches" (name: x: ''
+      ${concatMapStringsSep "\n" (p: ''
+        echo "# Patching with ${p}"
+        patch -p1 < ${p}
+      '') x.patches}
+    '')}
+
+    ${withTools "postPatch" (name: x: x.postPatch)}
+
+    ${config.postPatch or ""}
   '';
 
-  preConfigure = ''
-    # Fake wget: copy prefetched downloads instead
-    mkdir wget
-    echo "#!/bin/sh" > wget/wget
-    echo "echo ===== Not fetching \$*, copy pre-fetched file instead" >> wget/wget
-    echo "cp \$4 \$3" >> wget/wget
-    chmod +x wget/wget
-    export PATH=$PATH:$PWD/wget
-    export EXTRA_QEMUU_CONFIGURE_ARGS="--enable-spice --enable-usb-redir --enable-linux-aio"
-  '';
-
-  # https://github.com/NixOS/nixpkgs/issues/13590
-  configureFlags = ["--disable-stubdom"];
-
-  postConfigure =
-    ''
-      substituteInPlace tools/libfsimage/common/fsimage_plugin.c \
-        --replace /usr $out
-
-      substituteInPlace tools/blktap2/lvm/lvm-util.c \
-        --replace /usr/sbin/vgs ${lvm2}/sbin/vgs \
-        --replace /usr/sbin/lvs ${lvm2}/sbin/lvs
-
-      substituteInPlace tools/xenmon/xenmon.py \
-        --replace /usr/bin/pkill ${procps}/bin/pkill
-
-      substituteInPlace tools/xenstat/Makefile \
-        --replace /usr/include/curses.h ${ncurses.dev}/include/curses.h
-
-      substituteInPlace tools/qemu-xen-traditional/xen-hooks.mak \
-        --replace /usr/include/pci ${pciutils}/include/pci
-
-      substituteInPlace tools/qemu-xen-traditional-dir-remote/xen-hooks.mak \
-        --replace /usr/include/pci ${pciutils}/include/pci
-
-      substituteInPlace tools/hotplug/Linux/xen-backend.rules \
-        --replace /etc/xen/scripts $out/etc/xen/scripts
-
-      # blktap is not provided by xen, but by xapi
-      sed -i '/blktap/d' tools/hotplug/Linux/xen-backend.rules
-
-      # Work around a bug in our GCC wrapper: `gcc -MF foo -v' doesn't
-      # print the GCC version number properly.
-      substituteInPlace xen/Makefile \
-        --replace '$(CC) $(CFLAGS) -v' '$(CC) -v'
-
-      # Allow the location of the xendomains config file to be
-      # overriden at runtime.
-      substituteInPlace tools/hotplug/Linux/init.d/xendomains \
-        --replace 'XENDOM_CONFIG=/etc/sysconfig/xendomains' "" \
-        --replace 'XENDOM_CONFIG=/etc/default/xendomains' "" \
-        --replace /etc/xen/scripts/hotplugpath.sh $out/etc/xen/scripts/hotplugpath.sh \
-        --replace /bin/ls ls
-
-      substituteInPlace tools/hotplug/Linux/xendomains \
-        --replace /bin/ls ls
-
-      # Hack to get `gcc -m32' to work without having 32-bit Glibc headers.
-      mkdir -p tools/include/gnu
-      touch tools/include/gnu/stubs-32.h
-    '';
-
-  # Fix build on Glibc 2.24.
-  NIX_CFLAGS_COMPILE = "-Wno-error=deprecated-declarations";
-
   # TODO: Flask needs more testing before enabling it by default.
   #makeFlags = "XSM_ENABLE=y FLASK_ENABLE=y PREFIX=$(out) CONFIG_DIR=/etc XEN_EXTFILES_URL=\\$(XEN_ROOT)/xen_ext_files ";
-  makeFlags = "PREFIX=$(out) CONFIG_DIR=/etc XEN_EXTFILES_URL=\\$(XEN_ROOT)/xen_ext_files ";
+  makeFlags = [ "PREFIX=$(out) CONFIG_DIR=/etc" "XEN_SCRIPT_DIR=/etc/xen/scripts" ]
+           ++ (config.makeFlags or []);
 
   buildFlags = "xen tools";
 
-  postBuild =
-    ''
-      make -C docs man-pages
+  postBuild = ''
+    make -C docs man-pages
 
-      (cd tools/xen-libhvm-dir-remote; make)
-      (cd tools/xen-libhvm-dir-remote/biospt; cc -Wall -g -D_LINUX -Wstrict-prototypes biospt.c -o biospt -I../libhvm -L../libhvm -lxenhvm)
-    '';
+    ${withTools "buildPhase" (name: x: x.buildPhase)}
+  '';
 
-  installPhase =
-    ''
-      mkdir -p $out $out/share
-      cp -prvd dist/install/nix/store/*/* $out/
-      cp -prvd dist/install/boot $out/boot
-      cp -prvd dist/install/etc $out
-      cp -dR docs/man1 docs/man5 $out/share/man/
-      wrapPythonPrograms
-      substituteInPlace $out/etc/xen/scripts/hotplugpath.sh --replace SBINDIR=\"$out/sbin\" SBINDIR=\"$out/bin\"
+  installPhase = ''
+    mkdir -p $out $out/share
+    cp -prvd dist/install/nix/store/*/* $out/
+    cp -prvd dist/install/boot $out/boot
+    cp -prvd dist/install/etc $out
+    cp -dR docs/man1 docs/man5 $out/share/man/
 
-      shopt -s extglob
-      for i in $out/etc/xen/scripts/!(*.sh); do
-        sed -i "2s@^@export PATH=$out/bin:${scriptEnvPath}\n@" $i
-      done
+    ${withTools "installPhase" (name: x: x.installPhase)}
 
-      (cd tools/xen-libhvm-dir-remote; make install)
-      cp tools/xen-libhvm-dir-remote/biospt/biospt $out/bin/.
-    '';
+    # Hack
+    substituteInPlace $out/etc/xen/scripts/hotplugpath.sh \
+      --replace SBINDIR=\"$out/sbin\" SBINDIR=\"$out/bin\"
+
+    wrapPythonPrograms
+
+    shopt -s extglob
+    for i in $out/etc/xen/scripts/!(*.sh); do
+      sed -i "2s@^@export PATH=$out/bin:${scriptEnvPath}\n@" $i
+    done
+  '';
 
   meta = {
     homepage = http://www.xen.org/;
-    description = "Xen hypervisor and management tools for Dom0";
+    description = "Xen hypervisor and related components"
+                + optionalString (args ? meta && args.meta ? description)
+                                 " (${args.meta.description})";
+    longDescription = (args.meta.longDescription or "")
+                    + "\nIncludes:\n"
+                    + withXenfiles (name: x: ''* ${name}: ${x.meta.description or "(No description)"}.'');
     platforms = [ "x86_64-linux" ];
-    maintainers = with stdenv.lib.maintainers; [ eelco tstrobel ];
+    maintainers = with stdenv.lib.maintainers; [ eelco tstrobel oxij ];
   };
-}
+} // removeAttrs config [ "xenfiles" "buildInputs" "patches" "postPatch" "meta" ])

pkgs/applications/virtualization/xen/packages.nix

@@ -0,0 +1,64 @@
+{ callPackage
+, stdenv, overrideCC, gcc49
+}:
+
+# TODO on new Xen version: generalize this to generate [vanilla slim
+# light] for each ./<version>.nix.
+
+rec {
+
+  xen_4_5-vanilla = callPackage ./4.5.nix {
+    # At the very least included seabios and etherboot need gcc49,
+    # so we have to build all of it with gcc49.
+    stdenv = overrideCC stdenv gcc49;
+
+    meta = {
+      description = "vanilla";
+      longDescription = ''
+        Vanilla version of Xen. Uses forks of Qemu and Seabios bundled
+        with Xen. This gives vanilla experince, but wastes space and
+        build time: typical NixOS setup that runs lots of VMs will
+        build three different versions of Qemu when using this (two
+        forks and upstream).
+      '';
+    };
+  };
+
+  xen_4_5-slim = xen_4_5-vanilla.override {
+    withInternalQemu = false;
+    withInternalTraditionalQemu = true;
+    withInternalSeabios = false;
+    withSeabios = true;
+
+    meta = {
+      description = "slim";
+      longDescription = ''
+        Slimmed-down version of Xen that reuses nixpkgs packages as
+        much as possible. Different parts may get out of sync, but
+        this builds faster and uses less space than vanilla. Use with
+        `qemu_xen` from nixpkgs.
+      '';
+    };
+  };
+
+  xen_4_5-light = xen_4_5-vanilla.override {
+    withInternalQemu = false;
+    withInternalTraditionalQemu = false;
+    withInternalSeabios = false;
+    withSeabios = true;
+
+    meta = {
+      description = "light";
+      longDescription = ''
+        Slimmed-down version of Xen without `qemu-traditional` (you
+        don't need it if you don't know what it is). Use with
+        `qemu_xen-light` from nixpkgs.
+      '';
+    };
+  };
+
+  xen-vanilla = xen_4_5-vanilla;
+  xen-slim = xen_4_5-slim;
+  xen-light = xen_4_5-light;
+
+}

pkgs/desktops/gnome-2/platform/gtkglextmm/default.nix

@@ -28,9 +28,8 @@ stdenv.mkDerivation rec {
 
   meta = {
     description = "C++ wrappers for GtkGLExt";
-
     license = stdenv.lib.licenses.lgpl2Plus;
-
     platforms = stdenv.lib.platforms.linux;
+    broken = true;
   };
 }

pkgs/development/compilers/fsharp/default.nix

@@ -42,6 +42,6 @@ stdenv.mkDerivation rec {
     homepage = "http://fsharp.org/";
     license = stdenv.lib.licenses.asl20;
     maintainers = with stdenv.lib.maintainers; [ thoughtpolice raskin ];
-    platforms = with stdenv.lib.platforms; linux;
+    platforms = with stdenv.lib.platforms; unix;
   };
 }

pkgs/development/compilers/llvm/4/clang/default.nix

@@ -6,7 +6,7 @@ let
     name = "clang-${version}";
 
     unpackPhase = ''
-      unpackFile ${fetch "cfe" "1lsdyrz82vyrsc7k0ah1zmzzan61s5kakxrkxgfbmklp3pclfkwp"}
+      unpackFile ${fetch "cfe" "062n17mfsn85dx3qy1qvq8rfxi7hcbr2nj70v2dah3xmy28i3yaq"}
       mv cfe-${version}* clang
       sourceRoot=$PWD/clang
       unpackFile ${clang-tools-extra_src}

pkgs/development/compilers/llvm/4/default.nix

@@ -3,7 +3,7 @@ let
   callPackage = newScope (self // { inherit stdenv isl release_version version fetch; });
 
   release_version = "4.0.0";
-  rc = "rc3";
+  rc = "rc4";
   version = "${release_version}${rc}";
 
   fetch = name: sha256: fetchurl {
@@ -13,8 +13,8 @@ let
     inherit sha256;
   };
 
-  compiler-rt_src = fetch "compiler-rt" "0jfqhz95cp15c5688c6l9mr12s0qp86milpcrjlc93dc2jy08ba5";
-  clang-tools-extra_src = fetch "clang-tools-extra" "1c9c507w3f5vm153rdd0kmzvv2ski6z439izk01zf5snfwkqxkq8";
+  compiler-rt_src = fetch "compiler-rt" "1bxz2z9mxbx7211xfgsn5inwvpz53d1cqg76h8166dsli27xwkjm";
+  clang-tools-extra_src = fetch "clang-tools-extra" "0zkgnnv3srqxf44q4a5n3wpizf71mlq8w5rnwfwhdx777k94s5nx";
 
   self = {
     llvm = callPackage ./llvm.nix {

pkgs/development/compilers/llvm/4/libc++/default.nix

@@ -3,7 +3,7 @@
 stdenv.mkDerivation rec {
   name = "libc++-${version}";
 
-  src = fetch "libcxx" "15l6bcmwczspbqcq4m2lmzb23g11axr9m8dayn25iys26nn00q43";
+  src = fetch "libcxx" "052fc91y8084830ajfm8nkc0vghafhnfl7l89b68qsyz3ra93i3l";
 
   postUnpack = ''
     unpackFile ${libcxxabi.src}

pkgs/development/compilers/llvm/4/libc++abi.nix

@@ -3,7 +3,7 @@
 stdenv.mkDerivation {
   name = "libc++abi-${version}";
 
-  src = fetch "libcxxabi" "1frj1wz780xcwq77icfclnw6q4c8bkkdzkqsrmfjv9963kjylsy5";
+  src = fetch "libcxxabi" "02z8d0q42wfmnnd0rd1yg2x4y50rfrv1k9rq00a86b6803dc7p45";
 
   buildInputs = [ cmake ] ++ stdenv.lib.optional (!stdenv.isDarwin && !stdenv.isFreeBSD) libunwind;
 

pkgs/development/compilers/llvm/4/lld.nix

@@ -10,7 +10,7 @@
 stdenv.mkDerivation {
   name = "lld-${version}";
 
-  src = fetch "lld" "0kmyp7iyf4f76wgy87jczkyhvzhlwfydvxgggl74z0x89xgry745";
+  src = fetch "lld" "00wy4qczh4s6g49sbfmyk21845zx5qc2qpm39bznqz8ynpnh4phc";
 
   buildInputs = [ cmake llvm ];
 

pkgs/development/compilers/llvm/4/lldb.nix

@@ -17,7 +17,7 @@
 stdenv.mkDerivation {
   name = "lldb-${version}";
 
-  src = fetch "lldb" "1qr0ky7llwgjgx1pzkp3pnz32nb6f7lvg8qg6rp5axhgpkx54hz7";
+  src = fetch "lldb" "14dy1j48nw10w8brkpmla2vjjwfr1mrsl9wfabjfx1j85ywp3h69";
 
   patchPhase = ''
     # Fix up various paths that assume llvm and clang are installed in the same place

pkgs/development/compilers/llvm/4/llvm.nix

@@ -21,7 +21,7 @@
 }:
 
 let
-  src = fetch "llvm" "0ic3y9gaissi6ixyj9x1c0pq69wfbl2svhprp33av0b58f7wj9v7";
+  src = fetch "llvm" "1ljb5y5wgypk3sy8zcd5qdgsm5hw8vl7cy6874mbf4gnk9k809b1";
   shlib = if stdenv.isDarwin then "dylib" else "so";
 
   # Used when creating a version-suffixed symlink of libLLVM.dylib
@@ -50,12 +50,19 @@ in stdenv.mkDerivation rec {
   # 10.9. This is a temporary measure until nixpkgs darwin support is
   # updated.
   postPatch = stdenv.lib.optionalString stdenv.isDarwin ''
-        sed -i 's/os_trace(\(.*\)");$/printf(\1\\n");/g' ./projects/compiler-rt/lib/sanitizer_common/sanitizer_mac.cc
+    sed -i 's/os_trace(\(.*\)");$/printf(\1\\n");/g' ./projects/compiler-rt/lib/sanitizer_common/sanitizer_mac.cc
   ''
   # Patch llvm-config to return correct library path based on --link-{shared,static}.
   + stdenv.lib.optionalString (enableSharedLibraries) ''
     substitute '${./llvm-outputs.patch}' ./llvm-outputs.patch --subst-var lib
     patch -p1 < ./llvm-outputs.patch
+  ''
+  # Remove broken tests: (https://bugs.llvm.org//show_bug.cgi?id=31610)
+  + ''
+    rm test/CodeGen/AMDGPU/invalid-opencl-version-metadata1.ll
+    rm test/CodeGen/AMDGPU/invalid-opencl-version-metadata2.ll
+    rm test/CodeGen/AMDGPU/invalid-opencl-version-metadata3.ll
+    rm test/CodeGen/AMDGPU/runtime-metadata.ll
   '';
 
   # hacky fix: created binaries need to be run before installation
@@ -85,6 +92,14 @@ in stdenv.mkDerivation rec {
     rm -fR $out
 
     paxmark m bin/{lli,llvm-rtdyld}
+    paxmark m unittests/ExecutionEngine/MCJIT/MCJITTests
+    paxmark m unittests/ExecutionEngine/Orc/OrcJITTests
+    paxmark m unittests/Support/SupportTests
+    paxmark m bin/lli-child-target
+  '';
+
+  preCheck = ''
+    export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$PWD/lib
   '';
 
   postInstall = ""
@@ -103,6 +118,10 @@ in stdenv.mkDerivation rec {
     ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${release_version}.dylib
   '';
 
+  doCheck = stdenv.isLinux;
+
+  checkTarget = "check-all";
+
   enableParallelBuilding = true;
 
   passthru.src = src;

pkgs/development/compilers/rust/bootstrap.nix

@@ -12,7 +12,7 @@ let
     then "i686-apple-darwin"
     else if stdenv.system == "x86_64-darwin"
     then "x86_64-apple-darwin"
-    else abort "missing boostrap url for platform ${stdenv.system}";
+    else throw "missing bootstrap url for platform ${stdenv.system}";
 
   # fetch hashes by running `print-hashes.sh 1.14.0`
   bootstrapHash =
@@ -24,7 +24,7 @@ let
     then "fe1b3d67329a22d67e3b8db8858a43022e2e746dde60ef4a2db3f2cac16ea9bd"
     else if stdenv.system == "x86_64-darwin"
     then "3381341524b0184da5ed2cdcddc2a25e2e335e87f1cf676f64d98ee5e6479f20"
-    else throw "missing boostrap hash for platform ${stdenv.system}";
+    else throw "missing bootstrap hash for platform ${stdenv.system}";
 
   needsPatchelf = stdenv.isLinux;
 

pkgs/development/compilers/rust/nightlyBin.nix

@@ -5,12 +5,12 @@ let
 
   platform = if stdenv.system == "x86_64-linux"
     then "x86_64-unknown-linux-gnu"
-    else abort "missing boostrap url for platform ${stdenv.system}";
+    else throw "missing bootstrap url for platform ${stdenv.system}";
 
   bootstrapHash =
     if stdenv.system == "x86_64-linux"
     then "1v7jvwigb29m15wilzcrk5jmlpaccpzbkhlzf7z5qw08320gvc91"
-    else throw "missing boostrap hash for platform ${stdenv.system}";
+    else throw "missing bootstrap hash for platform ${stdenv.system}";
 
   needsPatchelf = stdenv.isLinux;
 

pkgs/development/compilers/sbcl/default.nix

@@ -9,11 +9,11 @@
 
 stdenv.mkDerivation rec {
   name    = "sbcl-${version}";
-  version = "1.3.14";
+  version = "1.3.15";
 
   src = fetchurl {
     url    = "mirror://sourceforge/project/sbcl/sbcl/${version}/${name}-source.tar.bz2";
-    sha256 = "1jnwsv8bdkrrg1w0gkjx9nb8sw3if38sna40davrx0rxadc3v5mz";
+    sha256 = "11db8pkv3i8ajyb295dh9nl0niyrkh9gjqv4vlaa1dl1vzck5ddi";
   };
 
   patchPhase = ''

pkgs/development/haskell-modules/configuration-common.nix

@@ -875,4 +875,6 @@ self: super: {
   # https://github.com/cartazio/arithmoi/issues/49
   arithmoi = overrideCabal super.arithmoi (drv: { doCheck = !pkgs.stdenv.isi686; });
 
+  # https://github.com/danidiaz/streaming-eversion/issues/1
+  streaming-eversion = dontCheck super.streaming-eversion;
 }

pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix

@@ -202,7 +202,7 @@ self: super: {
   hoauth2 = overrideCabal super.hoauth2 (drv: { testDepends = (drv.testDepends or []) ++ [ self.wai self.warp ]; });
   hslogger = addBuildDepend super.hslogger self.HUnit;
   intervals = addBuildDepends super.intervals (with self; [doctest QuickCheck]);
-  lens = addBuildDepends super.lens (with self; [doctest generic-deriving nats simple-reflect]);
+  lens = addBuildDepend super.lens self.generic-deriving;
   optparse-applicative = addBuildDepend super.optparse-applicative self.semigroups;
   QuickCheck = addBuildDepend super.QuickCheck self.semigroups;
   semigroups = addBuildDepends super.semigroups (with self; [hashable tagged text unordered-containers]);

pkgs/development/haskell-modules/configuration-hackage2nix.yaml

@@ -38,7 +38,7 @@ core-packages:
 
 default-package-overrides:
   - store < 0.4.1               # https://github.com/fpco/store/issues/104
-  # LTS Haskell 8.3
+  # LTS Haskell 8.4
   - abstract-deque ==0.3
   - abstract-par ==0.3.3
   - AC-Vector ==2.3.2
@@ -171,7 +171,7 @@ default-package-overrides:
   - arrow-list ==0.7
   - ascii-progress ==0.3.3.0
   - asciidiagram ==1.3.3
-  - asn1-encoding ==0.9.4
+  - asn1-encoding ==0.9.5
   - asn1-parse ==0.9.4
   - asn1-types ==0.3.2
   - async ==2.1.1
@@ -207,7 +207,7 @@ default-package-overrides:
   - base58string ==0.10.0
   - base64-bytestring ==1.0.0.1
   - base64-string ==0.2
-  - basic-prelude ==0.6.1
+  - basic-prelude ==0.6.1.1
   - bcrypt ==0.0.10
   - benchpress ==0.2.2.9
   - bencode ==0.6.0.0
@@ -326,7 +326,7 @@ default-package-overrides:
   - cheapskate ==0.1.0.5
   - cheapskate-highlight ==0.1.0.0
   - cheapskate-lucid ==0.1.0.0
-  - check-email ==1.0
+  - check-email ==1.0.2
   - checkers ==0.4.6
   - chell ==0.4.0.1
   - choice ==0.2.0
@@ -345,7 +345,7 @@ default-package-overrides:
   - clash-systemverilog ==0.7
   - clash-verilog ==0.7
   - clash-vhdl ==0.7
-  - classy-prelude ==1.2.0
+  - classy-prelude ==1.2.0.1
   - classy-prelude-conduit ==1.2.0
   - classy-prelude-yesod ==1.2.0
   - clay ==0.12.1
@@ -407,7 +407,7 @@ default-package-overrides:
   - cookie ==0.4.2.1
   - countable ==1.0
   - courier ==0.1.1.4
-  - cpphs ==1.20.3
+  - cpphs ==1.20.4
   - cprng-aes ==0.6.1
   - cpu ==0.1.2
   - cpuinfo ==0.1.0.1
@@ -612,8 +612,8 @@ default-package-overrides:
   - feed ==0.3.12.0
   - FenwickTree ==0.1.2.1
   - fft ==0.1.8.4
-  - fgl ==5.5.3.0
-  - fgl-arbitrary ==0.2.0.2
+  - fgl ==5.5.3.1
+  - fgl-arbitrary ==0.2.0.3
   - file-embed ==0.0.10
   - file-modules ==0.1.2.4
   - filecache ==0.2.9
@@ -860,6 +860,7 @@ default-package-overrides:
   - happstack-server-tls ==7.1.6.2
   - happy ==1.19.5
   - harp ==0.4.2
+  - hasbolt ==0.1.1.1
   - hashable ==1.2.5.0
   - hashable-time ==0.2
   - hashmap ==1.3.2
@@ -1089,7 +1090,7 @@ default-package-overrides:
   - interpolatedstring-perl6 ==1.0.0
   - IntervalMap ==0.5.2.0
   - intervals ==0.7.2
-  - intro ==0.1.0.8
+  - intro ==0.1.0.10
   - invariant ==0.4
   - invertible ==0.2.0.2
   - io-choice ==0.0.6
@@ -1105,7 +1106,7 @@ default-package-overrides:
   - IPv6Addr ==0.6.3
   - irc ==0.6.1.0
   - irc-client ==0.4.4.1
-  - irc-conduit ==0.2.2.0
+  - irc-conduit ==0.2.2.1
   - irc-ctcp ==0.1.3.0
   - irc-dcc ==2.0.0
   - islink ==0.1.0.0
@@ -1164,7 +1165,7 @@ default-package-overrides:
   - language-javascript ==0.6.0.9
   - language-lua2 ==0.1.0.5
   - language-nix ==2.1.0.1
-  - language-puppet ==1.3.5.1
+  - language-puppet ==1.3.6
   - language-python ==0.5.4
   - language-thrift ==0.10.0.0
   - large-hashable ==0.1.0.3
@@ -1223,7 +1224,7 @@ default-package-overrides:
   - loop ==0.3.0
   - lrucache ==1.2.0.0
   - lrucaching ==0.3.1
-  - lucid ==2.9.7
+  - lucid ==2.9.8.1
   - lucid-svg ==0.7.0.0
   - lzma-conduit ==1.1.3.1
   - machines ==0.6.1
@@ -1259,6 +1260,7 @@ default-package-overrides:
   - metrics ==0.4.0.1
   - MFlow ==0.4.6.0
   - mfsolve ==0.3.2.0
+  - microbench ==0.1
   - microformats2-parser ==1.0.1.6
   - microlens ==0.4.7.0
   - microlens-aeson ==2.2.0
@@ -1293,10 +1295,10 @@ default-package-overrides:
   - monad-par ==0.3.4.8
   - monad-par-extras ==0.3.3
   - monad-parallel ==0.7.2.2
-  - monad-peel ==0.2.1.1
+  - monad-peel ==0.2.1.2
   - monad-primitive ==0.1
   - monad-products ==4.0.1
-  - monad-skeleton ==0.1.2.2
+  - monad-skeleton ==0.1.3
   - monad-time ==0.2
   - monad-unlift ==0.2.0
   - monad-unlift-ref ==0.2.0
@@ -1309,7 +1311,7 @@ default-package-overrides:
   - MonadRandom ==0.5.1
   - monads-tf ==0.1.0.3
   - mongoDB ==2.1.1.1
-  - mono-traversable ==1.0.1.3
+  - mono-traversable ==1.0.2
   - mono-traversable-instances ==0.1.0.0
   - monoid-extras ==0.4.2
   - monoid-subclasses ==0.4.3.1
@@ -1646,7 +1648,7 @@ default-package-overrides:
   - rest-types ==1.14.1.1
   - rest-wai ==0.2.0.1
   - result ==0.2.6.0
-  - rethinkdb ==2.2.0.8
+  - rethinkdb ==2.2.0.9
   - rethinkdb-client-driver ==0.0.23
   - retry ==0.7.4.2
   - rev-state ==0.1.2
@@ -1703,7 +1705,7 @@ default-package-overrides:
   - servant-docs ==0.9.1.1
   - servant-elm ==0.4.0.1
   - servant-foreign ==0.9.1.1
-  - servant-js ==0.9.2
+  - servant-js ==0.9.3
   - servant-JuicyPixels ==0.3.0.2
   - servant-lucid ==0.7.1
   - servant-mock ==0.8.1.1
@@ -1813,7 +1815,7 @@ default-package-overrides:
   - storable-endian ==0.2.6
   - storable-record ==0.0.3.1
   - Strafunski-StrategyLib ==5.0.0.10
-  - stratosphere ==0.4.0
+  - stratosphere ==0.4.1
   - streaming ==0.1.4.5
   - streaming-bytestring ==0.1.4.6
   - streaming-commons ==0.1.17
@@ -1831,6 +1833,10 @@ default-package-overrides:
   - stringable ==0.1.3
   - stringbuilder ==0.5.0
   - stringsearch ==0.3.6.6
+  - stripe-core ==2.2.1
+  - stripe-haskell ==2.2.1
+  - stripe-http-streams ==2.2.1
+  - stripe-tests ==2.2.1
   - strive ==3.0.2
   - stylish-haskell ==0.7.1.0
   - success ==0.2.6
@@ -1863,7 +1869,7 @@ default-package-overrides:
   - tar-conduit ==0.1.0
   - tardis ==0.4.1.0
   - tasty ==0.11.2
-  - tasty-ant-xml ==1.0.4
+  - tasty-ant-xml ==1.0.5
   - tasty-auto ==0.1.0.2
   - tasty-dejafu ==0.3.0.2
   - tasty-discover ==1.1.0
@@ -2017,7 +2023,7 @@ default-package-overrides:
   - Unixutils ==1.54.1
   - unlit ==0.4.0.0
   - unordered-containers ==0.2.7.2
-  - uri-bytestring ==0.2.3.0
+  - uri-bytestring ==0.2.3.1
   - uri-encode ==1.5.0.5
   - uri-templater ==0.2.1.0
   - url ==2.1.3
@@ -2172,27 +2178,27 @@ default-package-overrides:
   - Yampa ==0.10.5
   - YampaSynth ==0.2
   - yes-precure5-command ==5.5.3
-  - yesod ==1.4.4
-  - yesod-auth ==1.4.16
+  - yesod ==1.4.5
+  - yesod-auth ==1.4.17
   - yesod-auth-account ==1.4.3
   - yesod-auth-basic ==0.1.0.2
   - yesod-auth-hashdb ==1.6.0.1
-  - yesod-bin ==1.5.1
-  - yesod-core ==1.4.31
-  - yesod-eventsource ==1.4.0.1
+  - yesod-bin ==1.5.2
+  - yesod-core ==1.4.32
+  - yesod-eventsource ==1.4.1
   - yesod-fay ==0.8.0
-  - yesod-form ==1.4.10
+  - yesod-form ==1.4.11
   - yesod-form-richtext ==0.1.0.0
   - yesod-gitrepo ==0.2.1.0
   - yesod-gitrev ==0.1.0.0
   - yesod-newsfeed ==1.6
-  - yesod-persistent ==1.4.1.1
+  - yesod-persistent ==1.4.2
   - yesod-sitemap ==1.4.0.1
-  - yesod-static ==1.5.1.1
+  - yesod-static ==1.5.2
   - yesod-static-angular ==0.1.8
   - yesod-table ==2.0.3
-  - yesod-test ==1.5.4.1
-  - yesod-websockets ==0.2.5
+  - yesod-test ==1.5.5
+  - yesod-websockets ==0.2.6
   - yi-core ==0.13.5
   - yi-frontend-vty ==0.13.5
   - yi-fuzzy-open ==0.13.5
@@ -2209,7 +2215,7 @@ default-package-overrides:
   - yjtools ==0.9.18
   - zero ==0.1.4
   - zeromq4-haskell ==0.6.5
-  - zip ==0.1.8
+  - zip ==0.1.9
   - zip-archive ==0.3.0.5
   - zippers ==0.2.2
   - zlib ==0.6.1.2

pkgs/development/haskell-modules/configuration-nix.nix

@@ -420,10 +420,16 @@ self: super: builtins.intersectAttrs super {
   # tests require git
   hapistrano = addBuildTool super.hapistrano pkgs.git;
 
+  # This propagates this to everything depending on haskell-gi-base
+  haskell-gi-base = addBuildDepend super.haskell-gi-base pkgs.gobjectIntrospection;
+
   # requires webkitgtk API version 3 (webkitgtk 2.4 is the latest webkit supporting that version)
   gi-javascriptcore = super.gi-javascriptcore.override { webkitgtk = pkgs.webkitgtk24x; };
   gi-webkit = super.gi-webkit.override { webkit = pkgs.webkitgtk24x; };
 
+  # Requires gi-javascriptcore API version 4
+  gi-webkit2 = super.gi-webkit2.override { gi-javascriptcore = self.gi-javascriptcore_4_0_11; };
+
   # requires valid, writeable $HOME
   hatex-guide = overrideCabal super.hatex-guide (drv: {
     preConfigure = ''

pkgs/development/haskell-modules/generic-builder.nix

@@ -1,5 +1,5 @@
 { stdenv, fetchurl, ghc, pkgconfig, glibcLocales, coreutils, gnugrep, gnused
-, jailbreak-cabal, hscolour, cpphs, nodePackages
+, jailbreak-cabal, hscolour, cpphs
 }: let isCross = (ghc.cross or null) != null; in
 
 { pname

pkgs/development/haskell-modules/hackage-packages.nix

@@ -2873,6 +2873,17 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "Compactable" = callPackage
+    ({ mkDerivation, base, containers, transformers, vector }:
+     mkDerivation {
+       pname = "Compactable";
+       version = "0.1.0.2";
+       sha256 = "402a4d9c2fd28c9d780f094d112858f38600cf73bbdddf9baaac580912cd3f3e";
+       libraryHaskellDepends = [ base containers transformers vector ];
+       description = "A generalization for containers that can be stripped of Nothing";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "Concurrent-Cache" = callPackage
     ({ mkDerivation, base }:
      mkDerivation {
@@ -20896,8 +20907,8 @@ self: {
      }:
      mkDerivation {
        pname = "affection";
-       version = "0.0.0.4";
-       sha256 = "31d82e66df577e34b0b96a70111d61918db70db93b3b0a66ce4e27c661688a58";
+       version = "0.0.0.5";
+       sha256 = "4d5f2d6257d6dcb6fe7b1658bead8e0c48451414d434d44e5492709b81ac43e7";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -33658,6 +33669,26 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "boltzmann-samplers" = callPackage
+    ({ mkDerivation, ad, base, containers, hashable, hmatrix, ieee754
+     , MonadRandom, mtl, QuickCheck, transformers, unordered-containers
+     , vector
+     }:
+     mkDerivation {
+       pname = "boltzmann-samplers";
+       version = "0.1.0.0";
+       sha256 = "5707065a83cb30223ffedbd740ac07d3d879bb0895ba7666d23d659e3b69883f";
+       revision = "1";
+       editedCabalFile = "203beaed2fdb6bbbd42cfa264f9fe1ef2ba4a69f4c92a85864317ffdd43a6a03";
+       libraryHaskellDepends = [
+         ad base containers hashable hmatrix ieee754 MonadRandom mtl
+         QuickCheck transformers unordered-containers vector
+       ];
+       homepage = "https://github.com/Lysxia/boltzmann-samplers#readme";
+       description = "Uniform random generators";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "bond" = callPackage
     ({ mkDerivation, aeson, aeson-pretty, async, base, bytestring
      , cmdargs, derive, Diff, directory, filepath, HUnit, monad-loops
@@ -34511,8 +34542,8 @@ self: {
     ({ mkDerivation, base, bson, template-haskell, text, th-lift }:
      mkDerivation {
        pname = "bson-mapping";
-       version = "0.1.5.0";
-       sha256 = "ba8ec4df8362c67e3da032399e92ddc94a6ddbd80232e2566648de0b5d53085a";
+       version = "0.1.5.1";
+       sha256 = "3f8eeb235b75a265bbc32b0fd808319144096d306f9bf1ed4434a28dd24facde";
        libraryHaskellDepends = [
          base bson template-haskell text th-lift
        ];
@@ -41194,20 +41225,20 @@ self: {
 
   "clit" = callPackage
     ({ mkDerivation, aeson, ansi-wl-pprint, authenticate-oauth, base
-     , bytestring, data-default, http-client, http-client-tls
+     , bytestring, data-default, directory, http-client, http-client-tls
      , http-types, lens, megaparsec, MissingH, optparse-applicative
      , split, text
      }:
      mkDerivation {
        pname = "clit";
-       version = "0.3.0.3";
-       sha256 = "963a5a636ded2f1f7ac7a6b4b4af8a38403ecda4913e12b36719ee57c1a27925";
+       version = "0.3.1.0";
+       sha256 = "1e8f6dfb1c868b979722ec855b8b75165a61bf41a210a2c29a408573c9bc8085";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
          aeson ansi-wl-pprint authenticate-oauth base bytestring
-         data-default http-client http-client-tls http-types lens megaparsec
-         MissingH optparse-applicative split text
+         data-default directory http-client http-client-tls http-types lens
+         megaparsec MissingH optparse-applicative split text
        ];
        executableHaskellDepends = [ base ];
        homepage = "https://github.com/vmchale/command-line-tweeter#readme";
@@ -58120,8 +58151,8 @@ self: {
     ({ mkDerivation, base, mtl }:
      mkDerivation {
        pname = "effin";
-       version = "0.3.0.1";
-       sha256 = "2e6a4a183d3626ab2509e7e80461efaeeb7327fa41fe3883f7e4163e9bec9365";
+       version = "0.3.0.2";
+       sha256 = "dd09e453c57987990865d8ff3b5e8ff26035a6087a31b5ecb4d1c3dfd785f014";
        libraryHaskellDepends = [ base mtl ];
        homepage = "https://github.com/YellPika/effin";
        description = "A Typeable-free implementation of extensible effects";
@@ -60658,6 +60689,26 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "eve" = callPackage
+    ({ mkDerivation, base, containers, data-default, free, hspec
+     , hspec-core, lens, mtl, pipes, pipes-concurrency, pipes-parse
+     }:
+     mkDerivation {
+       pname = "eve";
+       version = "0.1.0";
+       sha256 = "18cc10498a3c663fed847eaa5caf910f613cca4c817e05a3e884b077b2122ed9";
+       libraryHaskellDepends = [
+         base containers data-default free lens mtl pipes pipes-concurrency
+         pipes-parse
+       ];
+       testHaskellDepends = [
+         base data-default hspec hspec-core lens mtl
+       ];
+       homepage = "https://github.com/ChrisPenner/eve#readme";
+       description = "An extensible event framework";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "event" = callPackage
     ({ mkDerivation, base, containers, semigroups, transformers }:
      mkDerivation {
@@ -64053,8 +64104,8 @@ self: {
      }:
      mkDerivation {
        pname = "fix-imports";
-       version = "1.0.4";
-       sha256 = "46da19d982e3470bd28e55f895c3fc6e6e80a6b98f1014f32755b8601cc61e49";
+       version = "1.0.5";
+       sha256 = "0b072eec7895d3514276c2a25d6d56665dbabb46b13c22aeb5f560459216de05";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
@@ -64957,8 +65008,8 @@ self: {
      }:
      mkDerivation {
        pname = "fltkhs";
-       version = "0.5.1.2";
-       sha256 = "30a8f7229bb16ccd72bdefddf67d4ef23e9c87e200207dfdf944b737dd49a71d";
+       version = "0.5.1.3";
+       sha256 = "391f97abb8acac97b82d3b8a3ee3d62e2f76b566c01be2dff8835932fd85ae29";
        isLibrary = true;
        isExecutable = true;
        setupHaskellDepends = [ base Cabal directory filepath ];
@@ -66560,6 +66611,27 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "freer-effects" = callPackage
+    ({ mkDerivation, base, criterion, free, hlint, mtl, QuickCheck
+     , tasty, tasty-hunit, tasty-quickcheck
+     }:
+     mkDerivation {
+       pname = "freer-effects";
+       version = "0.3.0.0";
+       sha256 = "06b67cabe8141468a0bc55d6f39918fd0a037992e760411d116a36a22586d57f";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [ base ];
+       executableHaskellDepends = [ base ];
+       testHaskellDepends = [
+         base hlint QuickCheck tasty tasty-hunit tasty-quickcheck
+       ];
+       benchmarkHaskellDepends = [ base criterion free mtl ];
+       homepage = "https://github.com/IxpertaSolutions/freer-effects";
+       description = "Implementation of effect system for Haskell";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "freesect" = callPackage
     ({ mkDerivation, array, base, cpphs, directory, mtl, parallel
      , pretty, random, syb
@@ -68242,8 +68314,8 @@ self: {
      }:
      mkDerivation {
        pname = "general-games";
-       version = "1.0.1";
-       sha256 = "ce6805d308b6aed79de4c55ea6b4d1edd7ce0a536df9131d1aef2f1f7e1221a6";
+       version = "1.0.2";
+       sha256 = "1415c6cb8a2d37322e7568ae53ffca5d658aed6e47bbbefa5c59ed88c09b384e";
        libraryHaskellDepends = [
          base monad-loops MonadRandom random random-shuffle
        ];
@@ -68475,6 +68547,19 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "generic-random_0_4_1_0" = callPackage
+    ({ mkDerivation, base, boltzmann-samplers, QuickCheck }:
+     mkDerivation {
+       pname = "generic-random";
+       version = "0.4.1.0";
+       sha256 = "cad16f88436384b5157b1ba09d7931f2d31a60c46bab4669659bff7936032ee2";
+       libraryHaskellDepends = [ base boltzmann-samplers QuickCheck ];
+       homepage = "http://github.com/lysxia/generic-random";
+       description = "Generic random generators";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "generic-records" = callPackage
     ({ mkDerivation, base }:
      mkDerivation {
@@ -70291,14 +70376,14 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
-  "ghcjs-hplay_0_4_1" = callPackage
+  "ghcjs-hplay_0_4_2" = callPackage
     ({ mkDerivation, base, bytestring, containers, directory
      , ghcjs-perch, mtl, transformers, transient, transient-universe
      }:
      mkDerivation {
        pname = "ghcjs-hplay";
-       version = "0.4.1";
-       sha256 = "0589b76f6411abcf05a61a3f2b9d2d25064d5c1140dabf14b4a5d6aca0162b2b";
+       version = "0.4.2";
+       sha256 = "abab4f37c8168fca3c9c82b3349ac817c0771b6b09cc09a1eb6cce46bd0bdc2d";
        libraryHaskellDepends = [
          base bytestring containers directory ghcjs-perch mtl transformers
          transient transient-universe
@@ -76091,10 +76176,8 @@ self: {
      }:
      mkDerivation {
        pname = "google-maps-geocoding";
-       version = "0.1.0.0";
-       sha256 = "375204744bebde75f9d249dc535d6b3199b342c6e68e452b7af4a3ac55521ef5";
-       revision = "1";
-       editedCabalFile = "293782aef4b6465cfe154b1601db24c5720a444c802f5a454fa06f04f0549614";
+       version = "0.1.0.1";
+       sha256 = "58cd8efd50ebeaf4a5630f4548065c1e05ce6a39367d9ccaa0e1ccc67be3f531";
        libraryHaskellDepends = [
          aeson base http-client servant servant-client text
        ];
@@ -102520,8 +102603,8 @@ self: {
        pname = "imperative-edsl";
        version = "0.7";
        sha256 = "1a207736fb6b84e5316bbbe95593b464fe7f155db65e89fbac78b59d0e05f5f7";
-       revision = "1";
-       editedCabalFile = "c7ce36becbcecf66151a8b850abb7a19752aa0dfd68922198dd53ed95470b57c";
+       revision = "2";
+       editedCabalFile = "c0d206bbb494b14bb4f2bbcbab994dc65fde03edb3f898d3ede7492578774f97";
        libraryHaskellDepends = [
          array base BoundedChan containers data-default-class deepseq
          directory exception-transformers ghc-prim language-c-quote
@@ -106293,6 +106376,18 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "javascript-extras" = callPackage
+    ({ mkDerivation, base }:
+     mkDerivation {
+       pname = "javascript-extras";
+       version = "0.1.0.0";
+       sha256 = "cf74b6c2be87ee5bc96b5ff47335a8eb2d879d7ec83bf6c83be609293f40f4be";
+       libraryHaskellDepends = [ base ];
+       homepage = "https://github.com/louispan/javascript-extras#readme";
+       description = "Extra javascript functions when using GHCJS";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "javasf" = callPackage
     ({ mkDerivation, base, binary, bytestring, directory, doctest
      , filepath, language-java-classfile, QuickCheck
@@ -110783,6 +110878,32 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "language-c-quote_0_11_7_2" = callPackage
+    ({ mkDerivation, alex, array, base, bytestring, containers
+     , exception-mtl, exception-transformers, filepath, happy
+     , haskell-src-meta, HUnit, mainland-pretty, mtl, srcloc, syb
+     , symbol, template-haskell, test-framework, test-framework-hunit
+     }:
+     mkDerivation {
+       pname = "language-c-quote";
+       version = "0.11.7.2";
+       sha256 = "5654187eaa82afe2b7ad959436b35c561fa5bc5b68af5624ab204e9db3591508";
+       libraryHaskellDepends = [
+         array base bytestring containers exception-mtl
+         exception-transformers filepath haskell-src-meta mainland-pretty
+         mtl srcloc syb symbol template-haskell
+       ];
+       libraryToolDepends = [ alex happy ];
+       testHaskellDepends = [
+         base bytestring HUnit mainland-pretty srcloc symbol test-framework
+         test-framework-hunit
+       ];
+       homepage = "http://www.drexel.edu/~mainland/";
+       description = "C/CUDA/OpenCL/Objective-C quasiquoting library";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "language-cil" = callPackage
     ({ mkDerivation, base, bool-extras }:
      mkDerivation {
@@ -118345,6 +118466,19 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "mainland-pretty_0_5_0_0" = callPackage
+    ({ mkDerivation, base, containers, srcloc, text }:
+     mkDerivation {
+       pname = "mainland-pretty";
+       version = "0.5.0.0";
+       sha256 = "0666eb8e8005d42c00b49177eeb07518f578d2cb0f891aa7be6c44bd88428d43";
+       libraryHaskellDepends = [ base containers srcloc text ];
+       homepage = "https://github.com/mainland/mainland-pretty";
+       description = "Pretty printing designed for printing source code";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "majordomo" = callPackage
     ({ mkDerivation, base, bytestring, cmdargs, monad-loops, old-locale
      , threads, time, unix, zeromq-haskell
@@ -119321,8 +119455,8 @@ self: {
      }:
      mkDerivation {
        pname = "marvin";
-       version = "0.2.2";
-       sha256 = "87c5aa6059c7dbf6c8d20d31d3a242bc68aa888313453448ca520f726272dbbb";
+       version = "0.2.3";
+       sha256 = "79f439662bd8acd8ab528f29fad7ec73517edcf198fc29dc693c35100110553d";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -119587,6 +119721,23 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {eng = null; mat = null; mx = null;};
 
+  "matplotlib" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, process, tasty
+     , tasty-hunit, temporary
+     }:
+     mkDerivation {
+       pname = "matplotlib";
+       version = "0.1.0.0";
+       sha256 = "8001811170e201741eca52a0926c78810f451b104cc1ef055779b1b7351dee0d";
+       libraryHaskellDepends = [
+         aeson base bytestring process temporary
+       ];
+       testHaskellDepends = [ base tasty tasty-hunit temporary ];
+       homepage = "https://github.com/abarbu/matplotlib-haskell";
+       description = "Bindings to Matplotlib; a Python plotting library";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "matrices" = callPackage
     ({ mkDerivation, base, criterion, deepseq, primitive, tasty
      , tasty-hunit, tasty-quickcheck, vector
@@ -136351,6 +136502,41 @@ self: {
        maintainers = with stdenv.lib.maintainers; [ psibi ];
      }) {};
 
+  "persistent_2_6_1" = callPackage
+    ({ mkDerivation, aeson, attoparsec, base, base64-bytestring
+     , blaze-html, blaze-markup, bytestring, conduit, containers
+     , exceptions, fast-logger, hspec, http-api-data, lifted-base
+     , monad-control, monad-logger, mtl, old-locale, path-pieces
+     , resource-pool, resourcet, scientific, silently, tagged
+     , template-haskell, text, time, transformers, transformers-base
+     , unordered-containers, vector
+     }:
+     mkDerivation {
+       pname = "persistent";
+       version = "2.6.1";
+       sha256 = "c79e0f6e7b727dcae0c7c541f1d47eb8fb0b9e9c55d2478a476a4aca8e405f7e";
+       libraryHaskellDepends = [
+         aeson attoparsec base base64-bytestring blaze-html blaze-markup
+         bytestring conduit containers exceptions fast-logger http-api-data
+         lifted-base monad-control monad-logger mtl old-locale path-pieces
+         resource-pool resourcet scientific silently tagged template-haskell
+         text time transformers transformers-base unordered-containers
+         vector
+       ];
+       testHaskellDepends = [
+         aeson attoparsec base base64-bytestring blaze-html bytestring
+         conduit containers fast-logger hspec http-api-data lifted-base
+         monad-control monad-logger mtl old-locale path-pieces resource-pool
+         resourcet scientific tagged template-haskell text time transformers
+         unordered-containers vector
+       ];
+       homepage = "http://www.yesodweb.com/book/persistent";
+       description = "Type-safe, multi-backend data serialization";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+       maintainers = with stdenv.lib.maintainers; [ psibi ];
+     }) {};
+
   "persistent-audit" = callPackage
     ({ mkDerivation, aeson, attoparsec, base, bytestring
      , getopt-generics, hashable, hspec, mongoDB, persistent
@@ -136532,6 +136718,26 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "persistent-mysql_2_6_0_1" = callPackage
+    ({ mkDerivation, aeson, base, blaze-builder, bytestring, conduit
+     , containers, monad-control, monad-logger, mysql, mysql-simple
+     , persistent, resource-pool, resourcet, text, transformers
+     }:
+     mkDerivation {
+       pname = "persistent-mysql";
+       version = "2.6.0.1";
+       sha256 = "6c7b1805517c084ed971bcb78f12e7ebc87339389660ac470473a2ed49894cbe";
+       libraryHaskellDepends = [
+         aeson base blaze-builder bytestring conduit containers
+         monad-control monad-logger mysql mysql-simple persistent
+         resource-pool resourcet text transformers
+       ];
+       homepage = "http://www.yesodweb.com/book/persistent";
+       description = "Backend for the persistent library using MySQL database server";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "persistent-odbc" = callPackage
     ({ mkDerivation, aeson, base, bytestring, conduit, containers
      , convertible, HDBC, HDBC-odbc, monad-control, monad-logger
@@ -136588,6 +136794,28 @@ self: {
        maintainers = with stdenv.lib.maintainers; [ psibi ];
      }) {};
 
+  "persistent-postgresql_2_6_1" = callPackage
+    ({ mkDerivation, aeson, base, blaze-builder, bytestring, conduit
+     , containers, monad-control, monad-logger, persistent
+     , postgresql-libpq, postgresql-simple, resource-pool, resourcet
+     , text, time, transformers
+     }:
+     mkDerivation {
+       pname = "persistent-postgresql";
+       version = "2.6.1";
+       sha256 = "0cdfb492faa3a69ec69f06bb3c17ee6c36399f406e02a2ff16086f45bed6f870";
+       libraryHaskellDepends = [
+         aeson base blaze-builder bytestring conduit containers
+         monad-control monad-logger persistent postgresql-libpq
+         postgresql-simple resource-pool resourcet text time transformers
+       ];
+       homepage = "http://www.yesodweb.com/book/persistent";
+       description = "Backend for the persistent library using postgresql";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+       maintainers = with stdenv.lib.maintainers; [ psibi ];
+     }) {};
+
   "persistent-protobuf" = callPackage
     ({ mkDerivation, base, bytestring, persistent, protocol-buffers
      , protocol-buffers-descriptor, template-haskell, text
@@ -136708,6 +136936,34 @@ self: {
        maintainers = with stdenv.lib.maintainers; [ psibi ];
      }) {};
 
+  "persistent-sqlite_2_6_2" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, conduit, containers
+     , hspec, microlens-th, monad-control, monad-logger, old-locale
+     , persistent, persistent-template, resource-pool, resourcet
+     , temporary, text, time, transformers, unordered-containers
+     }:
+     mkDerivation {
+       pname = "persistent-sqlite";
+       version = "2.6.2";
+       sha256 = "6136c471fc81869cf0fde2049defb9c82698e3c0048d1321c3eda01046b985bf";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         aeson base bytestring conduit containers microlens-th monad-control
+         monad-logger old-locale persistent resource-pool resourcet text
+         time transformers unordered-containers
+       ];
+       testHaskellDepends = [
+         base hspec persistent persistent-template temporary text time
+         transformers
+       ];
+       homepage = "http://www.yesodweb.com/book/persistent";
+       description = "Backend for the persistent library using sqlite3";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+       maintainers = with stdenv.lib.maintainers; [ psibi ];
+     }) {};
+
   "persistent-template" = callPackage
     ({ mkDerivation, aeson, aeson-compat, base, bytestring, containers
      , ghc-prim, hspec, http-api-data, monad-control, monad-logger
@@ -136734,6 +136990,31 @@ self: {
        maintainers = with stdenv.lib.maintainers; [ psibi ];
      }) {};
 
+  "persistent-template_2_5_2" = callPackage
+    ({ mkDerivation, aeson, aeson-compat, base, bytestring, containers
+     , ghc-prim, hspec, http-api-data, monad-control, monad-logger
+     , path-pieces, persistent, QuickCheck, tagged, template-haskell
+     , text, transformers, unordered-containers
+     }:
+     mkDerivation {
+       pname = "persistent-template";
+       version = "2.5.2";
+       sha256 = "de695b008158f9ae66d103fc33f89c098ebcf59337367063d9f4f816a58b4011";
+       libraryHaskellDepends = [
+         aeson aeson-compat base bytestring containers ghc-prim
+         http-api-data monad-control monad-logger path-pieces persistent
+         tagged template-haskell text transformers unordered-containers
+       ];
+       testHaskellDepends = [
+         aeson base bytestring hspec persistent QuickCheck text transformers
+       ];
+       homepage = "http://www.yesodweb.com/book/persistent";
+       description = "Type-safe, non-relational, multi-backend persistence";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+       maintainers = with stdenv.lib.maintainers; [ psibi ];
+     }) {};
+
   "persistent-vector" = callPackage
     ({ mkDerivation, base, containers, criterion, deepseq, QuickCheck
      , test-framework, test-framework-quickcheck2
@@ -141984,6 +142265,8 @@ self: {
        pname = "primitive";
        version = "0.6.2.0";
        sha256 = "b8e8d70213e22b3fab0e0d11525c02627489618988fdc636052ca0adce282ae1";
+       revision = "1";
+       editedCabalFile = "a67c9da25c0d15971f8dc06c119cae4a0180a7216c0a3a3d6e52357d2f7ac134";
        libraryHaskellDepends = [ base ghc-prim transformers ];
        testHaskellDepends = [ base ghc-prim ];
        homepage = "https://github.com/haskell/primitive";
@@ -149006,8 +149289,8 @@ self: {
      }:
      mkDerivation {
        pname = "regex";
-       version = "0.3.0.0";
-       sha256 = "f0f8c9722a601edfc2fb7963956f331f3dd1e1655fafb07758aad6defea579de";
+       version = "0.5.0.0";
+       sha256 = "422392384ce3986d1c5627b30c8dc9dfb05fe41044820739d11da51ff1a8c27f";
        libraryHaskellDepends = [
          array base base-compat bytestring containers hashable heredoc
          regex-base regex-pcre-builtin regex-tdfa regex-tdfa-text
@@ -149165,8 +149448,8 @@ self: {
      }:
      mkDerivation {
        pname = "regex-examples";
-       version = "0.3.0.0";
-       sha256 = "c274ffacf3eeecb9e9530d07fd44dd0539c8225923ae0cb82b5d48ad6333903b";
+       version = "0.5.0.0";
+       sha256 = "bfc94f67d1723fd833247512549aa2e0a9d18070aaf9409feaef87388a48a1bb";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
@@ -159666,6 +159949,32 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "shell-conduit_4_6_0" = callPackage
+    ({ mkDerivation, async, base, bytestring, conduit, conduit-extra
+     , control-monad-loop, directory, filepath, hspec
+     , hspec-expectations, monad-control, monads-tf, process, resourcet
+     , semigroups, split, template-haskell, text, transformers
+     , transformers-base, unix
+     }:
+     mkDerivation {
+       pname = "shell-conduit";
+       version = "4.6.0";
+       sha256 = "9ce6230efb78589b5b28dd82396d73afbc832bbb8213f51c28ab6c946a9a12a1";
+       libraryHaskellDepends = [
+         async base bytestring conduit conduit-extra control-monad-loop
+         directory filepath monad-control monads-tf process resourcet
+         semigroups split template-haskell text transformers
+         transformers-base unix
+       ];
+       testHaskellDepends = [
+         base hspec hspec-expectations template-haskell
+       ];
+       homepage = "https://github.com/psibi/shell-conduit";
+       description = "Write shell scripts with Conduit";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "shell-escape" = callPackage
     ({ mkDerivation, base, binary, bytestring, containers, vector }:
      mkDerivation {
@@ -166267,6 +166576,34 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "stache_0_2_1" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, containers, criterion
+     , deepseq, directory, exceptions, file-embed, filepath, hspec
+     , hspec-megaparsec, megaparsec, mtl, template-haskell, text
+     , unordered-containers, vector, yaml
+     }:
+     mkDerivation {
+       pname = "stache";
+       version = "0.2.1";
+       sha256 = "f25c0a913cca7ae0056d8030e5351da809bdff53afef80d863c1ecaa0dbbd00f";
+       libraryHaskellDepends = [
+         aeson base bytestring containers deepseq directory exceptions
+         filepath megaparsec mtl template-haskell text unordered-containers
+         vector
+       ];
+       testHaskellDepends = [
+         aeson base bytestring containers file-embed hspec hspec-megaparsec
+         megaparsec text yaml
+       ];
+       benchmarkHaskellDepends = [
+         aeson base criterion deepseq megaparsec text
+       ];
+       homepage = "https://github.com/stackbuilders/stache";
+       description = "Mustache templates for Haskell";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "stack" = callPackage
     ({ mkDerivation, aeson, annotated-wl-pprint, ansi-terminal, async
      , attoparsec, base, base-compat, base16-bytestring
@@ -178733,6 +179070,24 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "transient-universe-tls" = callPackage
+    ({ mkDerivation, base, bytestring, certificate, cprng-aes
+     , data-default, network, tls, transient, transient-universe
+     , x509-store
+     }:
+     mkDerivation {
+       pname = "transient-universe-tls";
+       version = "0.1.0.0";
+       sha256 = "9f4b345602de7a3652fdcebb787c66017697ef6e0f16a47e59cda3c42cbd8467";
+       libraryHaskellDepends = [
+         base bytestring certificate cprng-aes data-default network tls
+         transient transient-universe x509-store
+       ];
+       homepage = "http://github.com/transient-haskell/transient-universe-tls";
+       description = "transient with secure communications";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "translatable-intset" = callPackage
     ({ mkDerivation, base, fingertree }:
      mkDerivation {
@@ -188859,6 +189214,29 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "websockets-rpc" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, containers, exceptions
+     , mtl, QuickCheck, quickcheck-instances, stm, tasty
+     , tasty-quickcheck, text, unordered-containers, wai-transformers
+     , websockets
+     }:
+     mkDerivation {
+       pname = "websockets-rpc";
+       version = "0.0.0";
+       sha256 = "e8a97330230f178fede76701fd2335fe18f48a124bd020c4be8120fa75ddf5bb";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         aeson base bytestring containers exceptions mtl QuickCheck stm text
+         unordered-containers wai-transformers websockets
+       ];
+       testHaskellDepends = [
+         aeson base QuickCheck quickcheck-instances tasty tasty-quickcheck
+       ];
+       description = "Simple streaming RPC mechanism using WebSockets";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "websockets-snap" = callPackage
     ({ mkDerivation, base, bytestring, bytestring-builder, io-streams
      , mtl, snap-core, snap-server, websockets

pkgs/development/haskell-modules/lib.nix

@@ -76,6 +76,14 @@ rec {
     fixupPhase = ":";
   });
 
+  # link executables statically against haskell libs to reduce closure size
+  justStaticExecutables = drv: overrideCabal drv (drv: {
+    enableSharedExecutables = false;
+    isLibrary = false;
+    doHaddock = false;
+    postFixup = "rm -rf $out/lib $out/nix-support $out/share/doc";
+  });
+
   buildFromSdist = pkg: pkgs.lib.overrideDerivation pkg (drv: {
     unpackPhase = let src = sdistTarball pkg; tarname = "${pkg.pname}-${pkg.version}"; in ''
       echo "Source tarball is at ${src}/${tarname}.tar.gz"

pkgs/development/interpreters/racket/default.nix

@@ -1,7 +1,7 @@
 { stdenv, fetchurl, makeFontsConf, makeWrapper
 , cairo, coreutils, fontconfig, freefont_ttf
-, glib, gmp, gtk2, libffi, libjpeg, libpng
-, libtool, mpfr, openssl, pango, poppler
+, glib, gmp, gtk2, libedit, libffi, libjpeg
+, libpng, libtool, mpfr, openssl, pango, poppler
 , readline, sqlite
 , disableDocs ? true
 }:
@@ -18,6 +18,7 @@ let
     glib
     gmp
     gtk2
+    libedit
     libjpeg
     libpng
     mpfr

pkgs/development/libraries/botan/2.0.nix

@@ -0,0 +1,10 @@
+{ callPackage, ... } @ args:
+
+callPackage ./generic.nix (args // {
+  baseVersion = "2.0";
+  revision = "1";
+  sha256 = "02sf6qghgs1lmprx715dnyll1rmqcjb9q6s50n20li8idlqysf51";
+  postPatch = ''
+    sed -e 's@lang_flags "@&--std=c++11 @' -i src/build-data/cc/{gcc,clang}.txt
+  '';
+})

pkgs/development/libraries/botan/2.0.upstream

@@ -0,0 +1,10 @@
+url http://botan.randombit.net/download.html
+version_link 'Botan-[0-9]+[.][0-9]*[02468]([.][0-9]+)?[.](tgz|tbz|tbz2|tar[.]bz2)$'
+ensure_version
+attribute_name botan2
+do_overwrite(){
+  ensure_hash
+  set_var_value sha256 $CURRENT_HASH
+  set_var_value baseVersion ${CURRENT_VERSION%.*}
+  set_var_value revision ${CURRENT_VERSION##*.}
+}

pkgs/development/libraries/eigen/3.3.nix

@@ -1,7 +1,7 @@
 {stdenv, fetchurl, cmake}:
 
 let
-  version = "3.3.1";
+  version = "3.3.3";
 in
 stdenv.mkDerivation {
   name = "eigen-${version}";
@@ -9,7 +9,7 @@ stdenv.mkDerivation {
   src = fetchurl {
     url = "http://bitbucket.org/eigen/eigen/get/${version}.tar.gz";
     name = "eigen-${version}.tar.gz";
-    sha256 = "141axgv5kykq7125scisjvnfcdx7qcj8n8zlk7g09r7fhqgjr79w";
+    sha256 = "0pz7k8kd9nydmsj2prjs67apixipl6pll3f0cjy0y3bvlazqr1wl";
   };
   
   nativeBuildInputs = [ cmake ];

pkgs/development/libraries/eigen/default.nix

@@ -1,7 +1,7 @@
 {stdenv, fetchurl, cmake}:
 
 let
-  version = "3.2.5";
+  version = "3.2.10";
 in
 stdenv.mkDerivation {
   name = "eigen-${version}";
@@ -9,10 +9,14 @@ stdenv.mkDerivation {
   src = fetchurl {
     url = "http://bitbucket.org/eigen/eigen/get/${version}.tar.gz";
     name = "eigen-${version}.tar.gz";
-    sha256 = "1vjixip19lwfia2bjpjwm09j7l20ry75493i6mjsk9djszj61agi";
+    sha256 = "00l52y7m276gh8wjkqqcxz6x687azrm7a70s3iraxnpy9bxa9y04";
   };
   
   nativeBuildInputs = [ cmake ];
+
+  postInstall = ''
+    sed -e '/Cflags:/s@''${prefix}@@' -i "$out"/share/pkgconfig/eigen3.pc
+  '';
   
   meta = with stdenv.lib; {
     description = "C++ template library for linear algebra: vectors, matrices, and related algorithms";

pkgs/development/libraries/harfbuzz/default.nix

@@ -5,7 +5,7 @@
 }:
 
 let
-  version = "1.4.2";
+  version = "1.4.4";
   inherit (stdenv.lib) optional optionals optionalString;
 in
 
@@ -14,7 +14,7 @@ stdenv.mkDerivation {
 
   src = fetchurl {
     url = "http://www.freedesktop.org/software/harfbuzz/release/harfbuzz-${version}.tar.bz2";
-    sha256 = "1cxpkhrjd20fwfysyxmi9rjvvggxlbzlyrs39p1dw3q0mg7ls8wg";
+    sha256 = "0mfj37qr8fw9mzsvk4296fq8vzq909mwlkl2xrjfrfvc8z5gilim";
   };
 
   outputs = [ "out" "dev" ];

pkgs/development/libraries/icu/57.nix

@@ -0,0 +1,64 @@
+{ stdenv, fetchurl, fetchpatch, fixDarwinDylibNames }:
+
+let
+  pname = "icu4c";
+  version = "57.1";
+in
+stdenv.mkDerivation ({
+  name = pname + "-" + version;
+
+  src = fetchurl {
+    url = "http://download.icu-project.org/files/${pname}/${version}/${pname}-"
+      + (stdenv.lib.replaceChars ["."] ["_"] version) + "-src.tgz";
+    sha256 = "10cmkqigxh9f73y7q3p991q6j8pph0mrydgj11w1x6wlcp5ng37z";
+  };
+
+  outputs = [ "out" "dev" ];
+  outputBin = "dev";
+
+  # FIXME: This fixes dylib references in the dylibs themselves, but
+  # not in the programs in $out/bin.
+  buildInputs = stdenv.lib.optional stdenv.isDarwin fixDarwinDylibNames;
+
+  postUnpack = ''
+    sourceRoot=''${sourceRoot}/source
+    echo Source root reset to ''${sourceRoot}
+  '';
+
+  # This pre/postPatch shenanigans is to handle that the patches expect
+  # to be outside of `source`.
+  prePatch = ''
+    pushd ..
+  '';
+  postPatch = ''
+    popd
+  '';
+
+  patches = [
+  ];
+
+  preConfigure = ''
+    sed -i -e "s|/bin/sh|${stdenv.shell}|" configure
+  '';
+
+  configureFlags = "--disable-debug" +
+    stdenv.lib.optionalString (stdenv.isFreeBSD || stdenv.isDarwin) " --enable-rpath";
+
+  # remove dependency on bootstrap-tools in early stdenv build
+  postInstall = stdenv.lib.optionalString stdenv.isDarwin ''
+    sed -i 's/INSTALL_CMD=.*install/INSTALL_CMD=install/' $out/lib/icu/${version}/pkgdata.inc
+  '';
+
+  postFixup = ''moveToOutput lib/icu "$dev" '';
+
+  enableParallelBuilding = true;
+
+  meta = with stdenv.lib; {
+    description = "Unicode and globalization support library";
+    homepage = http://site.icu-project.org/;
+    maintainers = with maintainers; [ raskin urkud ];
+    platforms = platforms.all;
+  };
+} // (if stdenv.isArm then {
+  patches = [ ./0001-Disable-LDFLAGSICUDT-for-Linux.patch ];
+} else {}))

pkgs/development/libraries/icu/default.nix

@@ -2,7 +2,7 @@
 
 let
   pname = "icu4c";
-  version = "57.1";
+  version = "58.2";
 in
 stdenv.mkDerivation ({
   name = pname + "-" + version;
@@ -10,7 +10,7 @@ stdenv.mkDerivation ({
   src = fetchurl {
     url = "http://download.icu-project.org/files/${pname}/${version}/${pname}-"
       + (stdenv.lib.replaceChars ["."] ["_"] version) + "-src.tgz";
-    sha256 = "10cmkqigxh9f73y7q3p991q6j8pph0mrydgj11w1x6wlcp5ng37z";
+    sha256 = "036shcb3f8bm1lynhlsb4kpjm9s9c2vdiir01vg216rs2l8482ib";
   };
 
   outputs = [ "out" "dev" ];
@@ -35,26 +35,6 @@ stdenv.mkDerivation ({
   '';
 
   patches = [
-    (fetchpatch {
-      url = "https://sources.debian.net/data/main/i/icu/57.1-5/debian/patches/CVE-2014-6585.patch";
-      sha256 = "1s8kqax444pqf5chwxvgsx1n1dx7v74h34fqh08fyq57mcjnpj4d";
-    })
-    (fetchpatch {
-      url = "https://sources.debian.net/data/main/i/icu/57.1-5/debian/patches/CVE-2015-4760.patch";
-      sha256 = "08gawyqbylk28i9pxv9vsw2drdpd6i97q0aml4nmv2xyb1ala0wp";
-    })
-    (fetchpatch {
-      url = "https://sources.debian.net/data/main/i/icu/57.1-5/debian/patches/CVE-2016-0494.patch";
-      sha256 = "1741s8lpmnizjprzk3xb7zkm5fznzgk8hhlrs8a338c18nalvxay";
-    })
-    (fetchpatch {
-      url = "https://sources.debian.net/data/main/i/icu/57.1-5/debian/patches/CVE-2016-6293.patch";
-      sha256 = "01h4xcss1vmsr60ijkv4lxsgvspwimyss61zp9nq4xd5i3kk1f4b";
-    })
-    (fetchpatch {
-      url = "https://sources.debian.net/data/main/i/icu/57.1-5/debian/patches/CVE-2016-7415.patch";
-      sha256 = "01d070h8d7rkj55ac8isr64m999bv5znc8vnxa7aajglsfidzs2r";
-    })
   ];
 
   preConfigure = ''

pkgs/development/libraries/libp11/default.nix

@@ -1,17 +1,17 @@
-{stdenv, fetchurl, libtool, openssl, pkgconfig}:
+{ stdenv, fetchFromGitHub, autoreconfHook, libtool, openssl, pkgconfig }:
 
 stdenv.mkDerivation rec {
   name = "libp11-0.2.7";
-  
-  src = fetchurl {
-    urls = [
-      "http://www.opensc-project.org/files/libp11/${name}.tar.gz"
-      "http://www.openadk.org/distfiles/${name}.tar.gz"
-    ];
-    sha256 = "0kaz5qafaxm0ycywmajl166c29fh9cz89b8i043jqsbxlpzf4hdp";
+
+  src = fetchFromGitHub {
+    owner = "OpenSC";
+    repo = "libp11";
+    rev = name;
+    sha256 = "0llw69kcb6nvz7zzkb9nyfyhc2s972q68sqciabqxwxljr09c411";
   };
-  
-  buildInputs = [ libtool openssl pkgconfig ];
+
+  nativeBuildInputs = [ autoreconfHook pkgconfig libtool ];
+  buildInputs = [ openssl ];
 
   meta = {
     homepage = http://www.opensc-project.org/libp11/;

pkgs/development/libraries/libpcap/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, flex, bison }:
+{ stdenv, fetchurl, fetchpatch, flex, bison }:
 
 stdenv.mkDerivation rec {
   name = "libpcap-1.8.1";
@@ -21,6 +21,13 @@ stdenv.mkDerivation rec {
     substituteInPlace configure --replace " -arch i386" ""
   '';
 
+  patches = [
+    (fetchpatch {
+      url    = "https://sources.debian.net/data/main/libp/libpcap/1.8.1-3/debian/patches/disable-remote.diff";
+      sha256 = "0dvjax9c0spvq8cdjnkbnm65wlzaml259yragf95kzg611vszfmj";
+    })
+  ];
+
   preInstall = ''mkdir -p $out/bin'';
 
   crossAttrs = {

pkgs/development/libraries/libre/default.nix

@@ -1,10 +1,10 @@
 {stdenv, fetchurl, zlib, openssl}:
 stdenv.mkDerivation rec {
-  version = "0.5.0";
+  version = "0.5.1";
   name = "libre-${version}";
   src=fetchurl {
     url = "http://www.creytiv.com/pub/re-${version}.tar.gz";
-    sha256 = "18msdi5a1ssymz00w21hg6sgacb2lzx0ns31iapvk5hv6l225pd2";
+    sha256 = "1qs6gpflgwic2pp1nplhhyl585h9q0kf74h5z29ajr5ij0j65rsa";
   };
   buildInputs = [zlib openssl];
   makeFlags = [

pkgs/development/libraries/libuv/default.nix

@@ -34,7 +34,10 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  doCheck = true;
+  # These should be turned back on, but see https://github.com/NixOS/nixpkgs/issues/23651
+  # For now the tests are just breaking large swaths of the nixpkgs binary cache for Darwin,
+  # and I'd rather have everything else work at all than have stronger assurance here.
+  doCheck = !stdenv.isDarwin;
 
   meta = with lib; {
     description = "A multi-platform support library with a focus on asynchronous I/O";

pkgs/development/libraries/mpir/default.nix

@@ -1,21 +1,16 @@
-{ stdenv, fetchurl, fetchpatch, m4 }:
+{ stdenv, fetchurl, fetchpatch, m4, which, yasm }:
 
 stdenv.mkDerivation rec {
   name = "mpir-${version}";
-  version = "2.7.2";
+  version = "3.0.0";
 
-  buildInputs = [ m4 ];
+  nativeBuildInputs = [ m4 which yasm ];
 
   src = fetchurl {
     url = "http://mpir.org/mpir-${version}.tar.bz2";
-    sha256 = "1v25dx7cah2vxwzgq78hpzqkryrfxhwx3mcj3jjq3xxljlsw7m57";
+    sha256 = "1fvmhrqdjs925hzr2i8bszm50h00gwsh17p2kn2pi51zrxck9xjj";
   };
 
-  patches = [ (fetchpatch {
-    url = "https://github.com/wbhart/mpir/commit/fdb590023f7ca4b2e881a2e9573718e7ed180f03.patch";
-    sha256 = "152pdqpf8xxr4ky25f9zrvfb66i1wzy6a5b91h4zmpqjdffqf1iw";
-  }) ];
-
   meta = {
     inherit version;
     description = ''A highly optimised library for bignum arithmetic forked from GMP'';

pkgs/development/libraries/nss/default.nix

@@ -9,11 +9,11 @@ let
 
 in stdenv.mkDerivation rec {
   name = "nss-${version}";
-  version = "3.28.1";
+  version = "3.28.3";
 
   src = fetchurl {
-    url = "mirror://mozilla/security/nss/releases/NSS_3_28_1_RTM/src/${name}.tar.gz";
-    sha256 = "58cc0c05c0ed9523e6d820bea74f513538f48c87aac931876e3d3775de1a82ad";
+    url = "mirror://mozilla/security/nss/releases/NSS_3_28_3_RTM/src/${name}.tar.gz";
+    sha256 = "1wrx2ig6yvgywjs25hzy4szgml21hwhd7ds0ghyfybhkiq7lyg6x";
   };
 
   buildInputs = [ nspr perl zlib sqlite ];

pkgs/development/libraries/qt-5/5.7/qtwebengine/default.nix

@@ -35,6 +35,13 @@ qtSubmodule {
     # fix default SSL bundle location
     sed -i -e 's,/cert.pem,/certs/ca-bundle.crt,' src/3rdparty/chromium/third_party/boringssl/src/crypto/x509/x509_def.c
 
+    # Fix library paths
+    sed -i \
+      -e "s,QLibraryInfo::location(QLibraryInfo::DataPath),QLatin1String(\"$out\"),g" \
+      -e "s,QLibraryInfo::location(QLibraryInfo::TranslationsPath),QLatin1String(\"$out/translations\"),g" \
+      -e "s,QLibraryInfo::location(QLibraryInfo::LibraryExecutablesPath),QLatin1String(\"$out/libexec\"),g" \
+      src/core/web_engine_library_info.cpp
+
     configureFlags+="\
         -plugindir $out/lib/qt5/plugins \
         -importdir $out/lib/qt5/imports \

pkgs/development/python-modules/nltk.nix

@@ -0,0 +1,30 @@
+{ fetchurl, buildPythonPackage, isPy33, lib, six, pythonAtLeast, pythonOlder }:
+
+buildPythonPackage rec {
+  name = "nltk-${version}";
+  version = "3.2.2";
+
+  src = fetchurl {
+    url = "mirror://pypi/n/nltk/nltk-${version}.tar.gz";
+    sha256 = "13m8i393h5mhpyvh5rghxxpax3bscv8li3ynwfdiq0kh8wsdndqv";
+  };
+
+  propagatedBuildInputs = [ six ];
+
+  disabled = pythonOlder "2.7" || pythonOlder "3.4" && (pythonAtLeast "3.0");
+
+  # Tests require some data, the downloading of which is impure. It would
+  # probably make sense to make the data another derivation, but then feeding
+  # that into the tests (given that we need nltk itself to download the data,
+  # unless there's an easy way to download it without nltk's downloader) might
+  # be complicated. For now let's just disable the tests and hope for the
+  # best.
+  doCheck = false;
+
+  meta = {
+    description = "Natural Language Processing ToolKit";
+    homepage = http://nltk.org/;
+    license = lib.licenses.asl20;
+    maintainers = with lib.maintainers; [ lheckemann ];
+  };
+}

pkgs/development/python-modules/pyqt/4.x.nix

@@ -1,14 +1,14 @@
 { stdenv, fetchurl, pythonPackages, qt4, pkgconfig, lndir, dbus_libs, makeWrapper }:
 
 let
-  version = "4.11.3";
+  version = "4.12";
   inherit (pythonPackages) mkPythonDerivation python dbus-python sip;
 in mkPythonDerivation {
   name = "PyQt-x11-gpl-${version}";
 
   src = fetchurl {
-    url = "mirror://sourceforge/pyqt/PyQt4/PyQt-${version}/PyQt-x11-gpl-${version}.tar.gz";
-    sha256 = "11jnfjw79s0b0qdd9s6kd69w87vf16dhagbhbmwbmrp2vgf80dw5";
+    url = "mirror://sourceforge/pyqt/PyQt4_gpl_x11-${version}.tar.gz";
+    sha256 = "1nw8r88a5g2d550yvklawlvns8gd5slw53yy688kxnsa65aln79w";
   };
 
   configurePhase = ''

pkgs/development/python-modules/pyqt/5.x.nix

@@ -2,7 +2,7 @@
 , lndir, makeWrapper, qmakeHook }:
 
 let
-  version = "5.6";
+  version = "5.8.1";
   inherit (pythonPackages) mkPythonDerivation python dbus-python sip;
 in mkPythonDerivation {
   name = "PyQt-${version}";
@@ -17,7 +17,7 @@ in mkPythonDerivation {
 
   src = fetchurl {
     url = "mirror://sourceforge/pyqt/PyQt5/PyQt-${version}/PyQt5_gpl-${version}.tar.gz";
-    sha256 = "1qgh42zsr9jppl9k7fcdbhxcd1wrb7wyaj9lng9nxfa19in1lj1f";
+    sha256 = "0biak7l574i2gc8lj1s45skajbxsmmx66nlvs6xaakzkc6r293qy";
   };
 
   buildInputs = [

pkgs/development/python-modules/pyrax.nix

@@ -0,0 +1,33 @@
+{ lib, buildPythonPackage, fetchurl, requests2, novaclient, keyring,
+  rackspace-novaclient, six, isPy3k, pytest, glibcLocales }:
+buildPythonPackage rec {
+  name = "pyrax-1.9.8";
+
+  src = fetchurl {
+    url = "mirror://pypi/p/pyrax/${name}.tar.gz";
+    sha256 = "1x98jzyxnvha81pgx3jpfixljhs7zik89yfp8q06kwpx8ws99nz9";
+  };
+
+  # no good reason given in commit why limited, and seems to work
+  patchPhase = ''
+      substituteInPlace "setup.py"                                     \
+              --replace "python-novaclient==2.27.0" "python-novaclient"
+    '';
+
+  disabled = isPy3k;
+  propagatedBuildInputs = [ requests2 novaclient keyring rackspace-novaclient six ];
+
+  LC_ALL = "en_US.UTF-8";
+  buildInputs = [ pytest glibcLocales ];
+
+  checkPhase = ''
+    py.test tests/unit
+  '';
+
+  meta = {
+    homepage = "https://github.com/rackspace/pyrax";
+    license = lib.licenses.asl20;
+    description = "Python API to interface with Rackspace";
+    maintainers = with lib.maintainers; [ teh ];
+  };
+}

pkgs/development/python-modules/rackspace-novaclient.nix

@@ -0,0 +1,151 @@
+{ buildPythonPackage, fetchurl, isPy3k, requests2, novaclient, six, lib }:
+let
+os-virtual-interfacesv2-python-novaclient-ext = buildPythonPackage rec {
+  name = "os_virtual_interfacesv2_python_novaclient_ext-0.20";
+
+  src = fetchurl {
+    url = "mirror://pypi/o/os-virtual-interfacesv2-python-novaclient-ext/${name}.tar.gz";
+    sha256 = "17a4r8psxmfikgmzh709absbn5jsh1005whibmwhysj9fi0zyfbd";
+  };
+
+  propagatedBuildInputs = [ six novaclient ];
+
+  meta = {
+    homepage = https://github.com/rackerlabs/os_virtual_interfacesv2_ext;
+    license = lib.licenses.asl20;
+    description = "Adds Virtual Interfaces support to python-novaclient";
+  };
+};
+
+ip-associations-python-novaclient-ext = buildPythonPackage rec {
+  name = "ip_associations_python_novaclient_ext-0.2";
+
+  src = fetchurl {
+    url = "mirror://pypi/i/ip_associations_python_novaclient_ext/${name}.tar.gz";
+    sha256 = "0dxfkfjhzskafmb01y8hzbcpvc4cd6fas1s50dzcmg29w4z6qmz4";
+  };
+
+  propagatedBuildInputs = [ six novaclient ];
+
+  meta = {
+    homepage = https://github.com/rackerlabs/ip_associations_python_novaclient_ext;
+    license = lib.licenses.asl20;
+    description = "Adds Rackspace ip_associations support to python-novaclient";
+  };
+};
+
+
+rackspace-auth-openstack = buildPythonPackage rec {
+  name = "rackspace-auth-openstack-1.3";
+
+  src = fetchurl {
+    url = "mirror://pypi/r/rackspace-auth-openstack/${name}.tar.gz";
+    sha256 = "1kaiyvgwmavw2mh0s32yjk70xsziynjdhi01qn9a8kljn7p6kh64";
+  };
+
+  propagatedBuildInputs = [ six novaclient ];
+
+  meta = {
+    homepage = https://pypi.python.org/pypi/rackspace-auth-openstack;
+    license = lib.licenses.asl20;
+    description = "Rackspace Auth Plugin for OpenStack Clients.";
+  };
+};
+rax-default-network-flags-python-novaclient-ext = buildPythonPackage rec {
+  name = "rax_default_network_flags_python_novaclient_ext-0.4.0";
+
+  src = fetchurl {
+    url = "mirror://pypi/r/rax_default_network_flags_python_novaclient_ext/${name}.tar.gz";
+    sha256 = "00b0csb58k6rr1is68bkkw358mms8mmb898bm8bbr8g7j2fz8aw5";
+  };
+
+  propagatedBuildInputs = [ six novaclient ];
+
+  meta = {
+    homepage = https://pypi.python.org/simple/rax-default-network-flags-python-novaclient-ext;
+    license = lib.licenses.asl20;
+    description = "Novaclient Extension for Instance Default Network Flags";
+  };
+};
+os-networksv2-python-novaclient-ext = buildPythonPackage rec {
+  name = "os_networksv2_python_novaclient_ext-0.26";
+
+  src = fetchurl {
+    url = "mirror://pypi/o/os_networksv2_python_novaclient_ext/${name}.tar.gz";
+    sha256 = "06dzqmyrwlq7hla6dk699z18c8v27qr1gxqknimwxlwqdlhpafk1";
+  };
+
+  propagatedBuildInputs = [ six novaclient ];
+
+  meta = {
+    homepage = https://pypi.python.org/pypi/os_networksv2_python_novaclient_ext;
+    license = lib.licenses.asl20;
+    description = "Adds rackspace networks support to python-novaclient";
+  };
+};
+
+rax-scheduled-images-python-novaclient-ext = buildPythonPackage rec {
+  name = "rax_scheduled_images_python_novaclient_ext-0.3.1";
+
+  src = fetchurl {
+    url = "mirror://pypi/r/rax_scheduled_images_python_novaclient_ext/${name}.tar.gz";
+    sha256 = "1nvwjgrkp1p1d27an393qf49pszm1nvqa2ychhbqmp0bnabwyw7i";
+  };
+
+  propagatedBuildInputs = [ six novaclient ];
+
+  meta = {
+    homepage = https://pypi.python.org/pypi/rax_scheduled_images_python_novaclient_ext;
+    license = lib.licenses.asl20;
+    description = "Extends python-novaclient to use RAX-SI, the Rackspace Nova API Scheduled Images extension";
+  };
+};
+
+os-diskconfig-python-novaclient-ext = buildPythonPackage rec {
+  name = "os_diskconfig_python_novaclient_ext-0.1.3";
+
+  src = fetchurl {
+    url = "mirror://pypi/o/os_diskconfig_python_novaclient_ext/${name}.tar.gz";
+    sha256 = "0xayy5nlkgl9yr0inqkwirlmar8pv1id29r59lj70g5plwrr5lg7";
+  };
+
+  propagatedBuildInputs = [ six novaclient ];
+
+  meta = {
+    homepage = https://pypi.python.org/pypi/os_diskconfig_python_novaclient_ext;
+    license = lib.licenses.asl20;
+    description = "Disk Config extension for python-novaclient";
+  };
+};
+
+in
+buildPythonPackage rec {
+  name = "rackspace-novaclient-2.1";
+
+  src = fetchurl {
+    url = "mirror://pypi/r/rackspace-novaclient/${name}.tar.gz";
+    sha256 = "1rzaa328hzm8hs9q99gvjr64x47fmcq4dv4656rzxq5s4gv49z12";
+  };
+
+  disabled = isPy3k;
+  propagatedBuildInputs = [
+    requests2
+    novaclient
+    six
+    # extensions
+    ip-associations-python-novaclient-ext
+    os-diskconfig-python-novaclient-ext
+    os-networksv2-python-novaclient-ext
+    os-virtual-interfacesv2-python-novaclient-ext
+    rackspace-auth-openstack
+    rax-default-network-flags-python-novaclient-ext
+    rax-scheduled-images-python-novaclient-ext
+  ];
+
+  meta = {
+    homepage = https://pypi.python.org/pypi/rackspace-novaclient/;
+    license = lib.licenses.asl20;
+    description = "Metapackage to install python-novaclient and Rackspace extensions";
+    maintainers = with lib.maintainers; [ teh ];
+  };
+}

pkgs/development/python-modules/sip/default.nix

@@ -1,11 +1,11 @@
 { lib, fetchurl, mkPythonDerivation, python, isPyPy }:
 
 if isPyPy then throw "sip not supported for interpreter ${python.executable}" else mkPythonDerivation rec {
-  name = "sip-4.18.1";
+  name = "sip-4.19.1";
 
   src = fetchurl {
     url = "mirror://sourceforge/pyqt/sip/${name}/${name}.tar.gz";
-    sha256 = "1452zy3g0qv4fpd9c0y4gq437kn0xf7bbfniibv5n43zpwnpmklv";
+    sha256 = "501852b8325349031b769d1c03d6eab04f7b9b97f790ec79f3d3d04bf065d83e";
   };
 
   configurePhase = ''

pkgs/development/tools/build-managers/buildbot/default.nix

@@ -1,76 +1,82 @@
-{ stdenv, lib, fetchurl, coreutils, openssh, buildbot-worker, makeWrapper,
-  pythonPackages, gnused, plugins ? [] }:
+{ stdenv, lib, openssh, buildbot-worker, pythonPackages, runCommand, makeWrapper }:
 
-pythonPackages.buildPythonApplication (rec {
-  name = "${pname}-${version}";
-  pname = "buildbot";
-  version = "0.9.4";
-  src = fetchurl {
-    url = "mirror://pypi/b/${pname}/${name}.tar.gz";
-    sha256 = "0wklrn4fszac9wi8zw3vbsznwyff6y57cz0i81zvh46skb6n3086";
-  };
-
-  buildInputs = with pythonPackages; [
-    lz4
-    txrequests
-    pyjade
-    boto3
-    moto
-    txgithub
-    mock
-    setuptoolsTrial
-    isort
-    pylint
-    astroid
-    pyflakes
-    openssh
-    buildbot-worker
-    makeWrapper
-    treq
-  ];
-
-  propagatedBuildInputs = with pythonPackages; [
-
-    # core
-    twisted
-    jinja2
-    zope_interface
-    sqlalchemy
-    sqlalchemy_migrate
-    future
-    dateutil
-    txaio
-    autobahn
-    pyjwt
-
-    # tls
-    pyopenssl
-    service-identity
-    idna
-
-    # docs
-    sphinx
-    sphinxcontrib-blockdiag
-    sphinxcontrib-spelling
-    pyenchant
-    docutils
-    ramlfications
-    sphinx-jinja
-
-  ] ++ plugins;
-
-  postPatch = ''
-    ${gnused}/bin/sed -i 's|/usr/bin/tail|${coreutils}/bin/tail|' buildbot/scripts/logwatcher.py
+let
+  withPlugins = plugins: runCommand "wrapped-${package.name}" {
+    buildInputs = [ makeWrapper ] ++ plugins;
+    passthru.withPlugins = moarPlugins: withPlugins (moarPlugins ++ plugins);
+  } ''
+    makeWrapper ${package}/bin/buildbot $out/bin/buildbot --prefix PYTHONPATH : $PYTHONPATH
   '';
 
-  postFixup = ''
-    makeWrapper $out/bin/.buildbot-wrapped $out/bin/buildbot --set PYTHONPATH "$PYTHONPATH"
-  '';
+  package = pythonPackages.buildPythonApplication (rec {
+    name = "${pname}-${version}";
+    pname = "buildbot";
+    version = "0.9.4";
 
-  meta = with stdenv.lib; {
-    homepage = http://buildbot.net/;
-    description = "Continuous integration system that automates the build/test cycle";
-    maintainers = with maintainers; [ nand0p ryansydnor ];
-    license = licenses.gpl2;
-  };
-})
+    src = pythonPackages.fetchPypi {
+      inherit pname version;
+      sha256 = "0wklrn4fszac9wi8zw3vbsznwyff6y57cz0i81zvh46skb6n3086";
+    };
+
+    buildInputs = with pythonPackages; [
+      lz4
+      txrequests
+      pyjade
+      boto3
+      moto
+      txgithub
+      mock
+      setuptoolsTrial
+      isort
+      pylint
+      astroid
+      pyflakes
+      openssh
+      buildbot-worker
+      treq
+    ];
+
+    propagatedBuildInputs = with pythonPackages; [
+
+      # core
+      twisted
+      jinja2
+      zope_interface
+      sqlalchemy
+      sqlalchemy_migrate
+      future
+      dateutil
+      txaio
+      autobahn
+      pyjwt
+
+      # tls
+      pyopenssl
+      service-identity
+      idna
+
+      # docs
+      sphinx
+      sphinxcontrib-blockdiag
+      sphinxcontrib-spelling
+      pyenchant
+      docutils
+      ramlfications
+      sphinx-jinja
+
+    ];
+
+    postPatch = ''
+      substituteInPlace buildbot/scripts/logwatcher.py --replace '/usr/bin/tail' "$(type -P tail)"
+    '';
+
+    passthru = { inherit withPlugins; };
+
+    meta = with stdenv.lib; {
+      homepage = http://buildbot.net/;
+      description = "Continuous integration system that automates the build/test cycle";
+      maintainers = with maintainers; [ nand0p ryansydnor ];
+      license = licenses.gpl2;
+    };
+  });
+in package

pkgs/development/tools/build-managers/buildbot/worker.nix

@@ -1,12 +1,12 @@
-{ stdenv, fetchurl, gnused, coreutils, pythonPackages }:
+{ stdenv, pythonPackages }:
 
 pythonPackages.buildPythonApplication (rec {
   name = "${pname}-${version}";
   pname = "buildbot-worker";
   version = "0.9.4";
 
-  src = fetchurl {
-    url = "mirror://pypi/b/${pname}/${name}.tar.gz";
+  src = pythonPackages.fetchPypi {
+    inherit pname version;
     sha256 = "0rdrr8x7sn2nxl51p6h9ad42s3c28lb6sys84zrg0d7fm4zhv7hj";
   };
 
@@ -14,7 +14,7 @@ pythonPackages.buildPythonApplication (rec {
   propagatedBuildInputs = with pythonPackages; [ twisted future ];
 
   postPatch = ''
-    ${gnused}/bin/sed -i 's|/usr/bin/tail|${coreutils}/bin/tail|' buildbot_worker/scripts/logwatcher.py
+    substituteInPlace buildbot_worker/scripts/logwatcher.py --replace '/usr/bin/tail' "$(type -P tail)"
   '';
 
   meta = with stdenv.lib; {

pkgs/development/tools/database/sqlitebrowser/default.nix

@@ -1,17 +1,28 @@
-{ stdenv, fetchFromGitHub, qt4, sqlite, cmake }:
+{ stdenv, fetchFromGitHub, qt5, sqlite, cmake }:
 
 stdenv.mkDerivation rec {
-  version = "3.8.0";
+  version = "3.9.1";
   name = "sqlitebrowser-${version}";
 
   src = fetchFromGitHub {
     repo   = "sqlitebrowser";
     owner  = "sqlitebrowser";
     rev    = "v${version}";
-    sha256 = "009yaamf6f654dl796f1gmj3rb34d55w87snsfgk33gpy6x19ccp";
+    sha256 = "1s7f2d7wx2i68x60z7wdws3il6m83k5n5w5wyjvr0mz0mih0s150";
   };
 
-  buildInputs = [ qt4 sqlite cmake ];
+  buildInputs = [ qt5.qtbase qt5.qttools sqlite cmake ];
+  
+  enableParallelBuilding = true;
+  
+  cmakeFlags = [ "-DUSE_QT5=TRUE" ];
+  
+  # A regression was introduced in CMakeLists.txt on v3.9.x
+  # See https://github.com/sqlitebrowser/sqlitebrowser/issues/832 and issues/755
+  patchPhase = ''
+    substituteInPlace CMakeLists.txt --replace 'project("DB Browser for SQLite")' 'project(sqlitebrowser)'
+  '';
+
 
   meta = with stdenv.lib; {
     description = "DB Browser for SQLite";
@@ -21,4 +32,3 @@ stdenv.mkDerivation rec {
     platforms = platforms.linux; # can only test on linux
   };
 }
-

pkgs/development/tools/delve/default.nix

@@ -19,5 +19,6 @@ buildGoPackage rec {
     homepage = "https://github.com/derekparker/delve";
     maintainers = with stdenv.lib.maintainers; [ vdemeester ];
     license = stdenv.lib.licenses.mit;
+    platforms = [ "x86_64-linux" ];
   };
 }

pkgs/development/tools/misc/kibana/default.nix

@@ -21,7 +21,7 @@ in stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "https://download.elastic.co/kibana/kibana/${name}-${plat}-${elasticArch}.tar.gz";
-    sha256 = shas."${stdenv.system}";
+    sha256 = shas."${stdenv.system}" or (throw "Unknown architecture");
   };
 
   buildInputs = [ makeWrapper ];

pkgs/games/lgogdownloader/default.nix

@@ -1,20 +1,20 @@
 { stdenv, fetchFromGitHub, cmake, pkgconfig, curl, boost, liboauth, jsoncpp
-, htmlcxx, rhash, tinyxml, help2man }:
+, htmlcxx, rhash, tinyxml-2, help2man }:
 
 stdenv.mkDerivation rec {
   name = "lgogdownloader-${version}";
-  version = "2.28";
+  version = "3.2";
 
   src = fetchFromGitHub {
     owner = "Sude-";
     repo = "lgogdownloader";
     rev = "v${version}";
-    sha256 = "1xn6pfvxz496sj5jiqyzqj6vn6vrzyks9f6xha8g4vy6hkw717ag";
+    sha256 = "0p1zh2l8g4y2z02xj0fndbfhcxgcpwhf5d9izwsdi3yljvqv23np";
   };
 
   nativeBuildInputs = [ cmake pkgconfig help2man ];
 
-  buildInputs = [ curl boost liboauth jsoncpp htmlcxx rhash tinyxml ];
+  buildInputs = [ curl boost liboauth jsoncpp htmlcxx rhash tinyxml-2 ];
 
   meta = {
     homepage = https://github.com/Sude-/lgogdownloader;

pkgs/games/sgt-puzzles/default.nix

@@ -1,6 +1,6 @@
 {stdenv, gtk3, pkgconfig, libX11, perl, fetchurl, automake115x, autoconf}:
 let
-  version = "20161228.7cae89f";
+  version = "20170228.1f613ba";
   buildInputs = [
     gtk3 pkgconfig libX11 perl automake115x autoconf
   ];
@@ -8,7 +8,7 @@ in
 stdenv.mkDerivation {
   src = fetchurl {
    url = "http://www.chiark.greenend.org.uk/~sgtatham/puzzles/puzzles-${version}.tar.gz";
-   sha256 = "0kqy3gdgfjgaqbjl95pnljz44v91i79qphwdp91k0n5alswxwn76";
+   sha256 = "02nqc18fhvxr545wgk55ly61fi0a06q61ljzwadprqxa1n0g0fz5";
   };
   name = "sgt-puzzles-r" + version;
   inherit buildInputs;

pkgs/misc/emulators/mess/default.nix

@@ -6,12 +6,12 @@ let
   version = "139";
 
   mameSrc = fetchurl {
-    url = "http://www.aarongiles.com/mirror/releases/mame0${version}s.zip";
+    url = "https://github.com/mamedev/mame/releases/download/mame0139/mame0${version}s.zip";
     sha256 = "1mpkwxfz38cgxzvlni2y3fxas3b8qmnzj2ik2zzbd8mr622jdp79";
   };
-  
+
   messSrc = fetchurl {
-    url = "http://mess.redump.net/_media/downloads:mess0${version}s.zip";
+    url = "http://www.progettosnaps.net/MESS/src/mess0${version}s.zip";
     name = "mess0139s.zip";
     sha256 = "1v892cg6wn8cdwc8pf1gcqqdb1v1v295r6jw2hf58svwx3h27xyy";
   };
@@ -39,10 +39,11 @@ stdenv.mkDerivation {
       mkdir -p $out/bin
       cp mess* $out/bin/mess 
     '';
-    
+
   meta = {
     homepage = http://www.mess.org/;
     license = "non-commercial";
     description = "Multi Emulator Super System, an emulator of many game consoles and computer systems";
+    broken = true;
   };
 }

pkgs/misc/lilypond/fonts.nix

@@ -24,11 +24,11 @@ let
 
       installPhase = ''
         for f in {otf,supplementary-fonts}/**.{o,t}tf; do
-          install -Dt $out/otf -m755 otf/*
+          install -Dt $out/otf -m755 $f
         done
 
         for f in svg/**.{svg,woff}; do
-          install -Dt $out/svg -m755 svg/*
+          install -Dt $out/svg -m755 $f
         done
       '';
 

pkgs/os-specific/linux/firmware/raspberrypi/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "raspberrypi-firmware-${version}";
-  version = "1.20161020";
+  version = "1.20170303";
 
   src = fetchFromGitHub {
     owner = "raspberrypi";
     repo = "firmware";
     rev = version;
-    sha256 = "073cry7xqrbkn8p1qzl4f3z6jvcbks4i61fz7i2pbwa60vddcp34";
+    sha256 = "1s5dycgix97681vpq7ggpc27n865wgv9npzxvbr2q2bp3ia9mcim";
   };
 
   dontStrip = true;    # Stripping breaks some of the binaries

pkgs/os-specific/linux/kernel/linux-rpi.nix

@@ -1,8 +1,8 @@
 { stdenv, fetchFromGitHub, perl, buildLinux, ... } @ args:
 
 let
-  modDirVersion = "4.4.26";
-  tag = "1.20161020-1";
+  modDirVersion = "4.4.50";
+  tag = "1.20170303";
 in
 stdenv.lib.overrideDerivation (import ./generic.nix (args // rec {
   version = "${modDirVersion}-${tag}";
@@ -11,8 +11,8 @@ stdenv.lib.overrideDerivation (import ./generic.nix (args // rec {
   src = fetchFromGitHub {
     owner = "raspberrypi";
     repo = "linux";
-    rev = "raspberrypi-kernel_${tag}";
-    sha256 = "0y76xrapq7710zzf6sif94xzly72gg505y65lslfirng500ncnv5";
+    rev = "raspberrypi-kernel_${tag}-1";
+    sha256 = "1lvsr8zm8p1ng4b9vq0nkf2gn4gabla8dh6l60vifclqdcq2vwvx";
   };
 
   features.iwlwifi = true;

pkgs/servers/dns/knot-resolver/default.nix

@@ -10,11 +10,11 @@ let
 in
 stdenv.mkDerivation rec {
   name = "knot-resolver-${version}";
-  version = "1.2.3";
+  version = "1.2.4";
 
   src = fetchurl {
     url = "http://secure.nic.cz/files/knot-resolver/${name}.tar.xz";
-    sha256 = "81a773f182112b4e11935223f900cfbcca8624f2c382b1e39a68d7c3db81c921";
+    sha256 = "630b2ad0bfdcf59164957a377adef8b1fddc37a58a7e1d10e76a1b497a30f036";
   };
 
   outputs = [ "out" "dev" ];

pkgs/servers/nosql/apache-jena/binary.nix

@@ -3,10 +3,10 @@ let
   s = # Generated upstream information
   rec {
     baseName="apache-jena";
-    version = "3.1.1";
+    version = "3.2.0";
     name="${baseName}-${version}";
     url="http://archive.apache.org/dist/jena/binaries/apache-jena-${version}.tar.gz";
-    sha256 = "0sxhpasc3qkj1axkccvckv8wiwcc5v6f4yri49inc3sl02pvvanp";
+    sha256 = "0n15mx8lnamkf3a1wlgx5slh6615m14wclv8fzkbb1xqq001c3j4";
   };
   buildInputs = [
     makeWrapper

pkgs/servers/nosql/apache-jena/fuseki-binary.nix

@@ -3,10 +3,10 @@ let
   s = # Generated upstream information
   rec {
     baseName="apache-jena-fuseki";
-    version = "2.4.1";
+    version = "2.5.0";
     name="${baseName}-${version}";
     url="http://archive.apache.org/dist/jena/binaries/apache-jena-fuseki-${version}.tar.gz";
-    sha256 = "01yjpghgz637wwgnk5n9d7kchc3mmrbyrm8fs4rh2hkh66mq3ya4";
+    sha256 = "0qkdpifv30138y7d6vj0dksk4fbgcnwl26dqm89q0d66sc0czfbv";
   };
   buildInputs = [
     makeWrapper

pkgs/servers/nosql/cassandra/1.2.nix

@@ -1,6 +0,0 @@
-{ callPackage, ... } @ args:
-
-callPackage ./generic.nix (args // {
-  version = "1.2.19";
-  sha256 = "0zkq3ggpk8ra2siar43vmrn6lmvn902p1g2lrgb46ak1vii6w30w";
-})

pkgs/servers/nosql/cassandra/2.0.nix

@@ -1,6 +0,0 @@
-{ callPackage, ... } @ args:
-
-callPackage ./generic.nix (args // {
-  version = "2.0.16";
-  sha256 = "1fpvgmakmxy1lnygccpc32q53pa36bwy0lqdvb6hsifkxymdw8y5";
-})

pkgs/tools/X11/primus/default.nix

@@ -20,7 +20,10 @@ let
 
   primus = if useNvidia then primusLib_ else primusLib_.override { nvidia_x11 = null; };
   primus_i686 = if useNvidia then primusLib_i686_ else primusLib_i686_.override { nvidia_x11 = null; };
-  ldPath = lib.makeLibraryPath ([ primus primus.glvnd ] ++ lib.optionals (primusLib_i686 != null) [ primus_i686 primus_i686.glvnd ]);
+  ldPath = lib.makeLibraryPath (lib.filter (x: x != null) (
+    [ primus primus.glvnd ]
+    ++ lib.optionals (primusLib_i686 != null) [ primus_i686 primus_i686.glvnd ]
+  ));
 
 in writeScriptBin "primusrun" ''
   #!${stdenv.shell}

pkgs/tools/admin/salt/pepper/default.nix

@@ -0,0 +1,22 @@
+{ lib
+, fetchurl
+, python2Packages
+}:
+
+python2Packages.buildPythonApplication rec {
+  name = "salt-pepper-${version}";
+  version = "0.5.0";
+  src = fetchurl {
+    url = "https://github.com/saltstack/pepper/releases/download/${version}/${name}.tar.gz";
+    sha256 = "0gf4v5y1kp16i1na4c9qw7cgrpsh21p8ldv9r6b8gdwcxzadxbck";
+  };
+
+  doCheck = false; # no tests available
+
+  meta = with lib; {
+    description = "A CLI front-end to a running salt-api system";
+    homepage = https://github.com/saltstack/pepper;
+    maintainers = [ maintainers.pierrer ];
+    license = licenses.asl20;
+  };
+}

pkgs/tools/filesystems/glusterfs/default.nix

@@ -3,14 +3,13 @@
  , liburcu, attr, makeWrapper, coreutils, gnused, gnugrep, which
 }:
 let 
-  s = # Generated upstream information 
+  s =
   rec {
     baseName="glusterfs";
-    version="3.9.1";
+    version = "3.10.0";
     name="${baseName}-${version}";
-    hash="02p3i1zr0i2fhjhz64wvhdn0z7b6b3hkiqz1bkyhracncspxnvw9";
-    url="http://download.gluster.org/pub/gluster/glusterfs/3.9/3.9.1/glusterfs-3.9.1.tar.gz";
-    sha256="02p3i1zr0i2fhjhz64wvhdn0z7b6b3hkiqz1bkyhracncspxnvw9";
+    url="http://download.gluster.org/pub/gluster/glusterfs/3.10/3.10.0/glusterfs-3.10.0.tar.gz";
+    sha256 = "1svysq55z4sd6bxcdpkxljwis4cnzkknag22ngyr7sgb4bs19c97";
   };
   buildInputs = [
     fuse bison flex_2_5_35 openssl python2 ncurses readline