From 62f4ded8d2ac537cb9755c390c7526f2933f72c2 Mon Sep 17 00:00:00 2001
From: Tom Hunger <tehunger@gmail.com>
Date: Sat, 23 Sep 2017 16:12:44 +0100
Subject: [PATCH 1/3] bokeh: 0.12.7 -> 0.12.9

---
 pkgs/development/python-modules/bokeh/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/python-modules/bokeh/default.nix b/pkgs/development/python-modules/bokeh/default.nix
index 43c176a09ec..a1ae95e6d5d 100644
--- a/pkgs/development/python-modules/bokeh/default.nix
+++ b/pkgs/development/python-modules/bokeh/default.nix
@@ -34,11 +34,11 @@
 buildPythonPackage rec {
   pname = "bokeh";
   name = "${pname}${version}";
-  version = "0.12.7";
+  version = "0.12.9";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2c42c95bf1a418c758dbff8446b4f5e5fc72ac10ea5da4e6b5010067396d0880";
+    sha256 = "00jx3yycy6fziihz45hwj1dsh520h3vmypp28mw0877rxpxl2yxg";
   };
 
   disabled = isPyPy;
@@ -79,4 +79,4 @@ buildPythonPackage rec {
     homepage = "http://github.com/bokeh/bokeh";
     license = lib.licenses.bsd3;
   };
-}
\ No newline at end of file
+}

From 8cc240af22eb57284df4b5bca3c9f3332aa96025 Mon Sep 17 00:00:00 2001
From: Tom Hunger <tehunger@gmail.com>
Date: Sat, 23 Sep 2017 16:39:04 +0100
Subject: [PATCH 2/3] flake8-future-import: Add patch to fix tests.

---
 .../flake8-future-import/default.nix               | 14 +++++++++++++-
 1 file changed, 13 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/flake8-future-import/default.nix b/pkgs/development/python-modules/flake8-future-import/default.nix
index f00c1fe2166..2ece8ba85ab 100644
--- a/pkgs/development/python-modules/flake8-future-import/default.nix
+++ b/pkgs/development/python-modules/flake8-future-import/default.nix
@@ -1,4 +1,5 @@
-{ lib, fetchFromGitHub, buildPythonPackage, python, flake8, six }:
+{ lib, fetchFromGitHub, buildPythonPackage, python, flake8, six,
+  fetchurl }:
 
 buildPythonPackage rec {
   pname = "flake8-future-import";
@@ -11,6 +12,17 @@ buildPythonPackage rec {
     rev = version;
     sha256 = "0622bdcfa588m7g8igag6hf4rhjdwh74yfnrjwlxw4vlqhg344k4";
   };
+
+  patches = [
+    # Tests in 0.4.3 are broken. We can remove this patch after
+    # the next release.
+    (fetchurl {
+      url = "https://github.com/xZise/flake8-future-import/commit/b4f5a06b22c574fb5270574d1420715667768d5c.patch";
+      sha256 = "06n9ggz9p9kiwjb3vmaj44pm5vi4nhgzjfn7i730m85xn67xzmyn";
+    })
+  ];
+
+
   propagatedBuildInputs = [ flake8 six ];
   meta = {
     homepage = https://github.com/xZise/flake8-future-import;

From 83e48f770bcdbbe2479c8424a3a91adf620b2784 Mon Sep 17 00:00:00 2001
From: Tom Hunger <tehunger@gmail.com>
Date: Sun, 24 Sep 2017 14:40:19 +0100
Subject: [PATCH 3/3] xarray: Add upstream patch to fix tests. (#28643)

---
 pkgs/development/python-modules/xarray/default.nix | 10 ++++++++++
 1 file changed, 10 insertions(+)

diff --git a/pkgs/development/python-modules/xarray/default.nix b/pkgs/development/python-modules/xarray/default.nix
index 7b9712dfd02..1215e613f6f 100644
--- a/pkgs/development/python-modules/xarray/default.nix
+++ b/pkgs/development/python-modules/xarray/default.nix
@@ -5,6 +5,7 @@
 , numpy
 , pandas
 , python
+, fetchurl
 }:
 
 buildPythonPackage rec {
@@ -17,6 +18,15 @@ buildPythonPackage rec {
     sha256 = "f649a41d43b5a6c64bdcbd57e994932656b689f9593a86dd0be95778a2b47494";
   };
 
+  # Temporary patch until next release (later than 0.9.6) to fix
+  # a broken test case.
+  patches = [
+    (fetchurl {
+      url = "https://github.com/pydata/xarray/commit/726c6a3638ecf95889c541d84e892a106c2f2f92.patch";
+      sha256 = "1i2hsj5v5qlvqfj48vyn9931yndsf4k4wrk3qpqpywh32s7r007b";
+    })
+  ];
+
   buildInputs = [ pytest ];
   propagatedBuildInputs = [numpy pandas];