From 08a7427ee1637ace1811f7303ffb81549b79bc9b Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 19 Mar 2021 21:39:08 +0000
Subject: [PATCH 01/16] sc-im: 0.7.0 -> 0.8.0

---
 pkgs/applications/misc/sc-im/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/sc-im/default.nix b/pkgs/applications/misc/sc-im/default.nix
index 0ae7a5c1ec0..833d1403d24 100644
--- a/pkgs/applications/misc/sc-im/default.nix
+++ b/pkgs/applications/misc/sc-im/default.nix
@@ -1,14 +1,14 @@
 { lib, stdenv, fetchFromGitHub, yacc, ncurses, libxml2, libzip, libxls, pkg-config }:
 
 stdenv.mkDerivation rec {
-  version = "0.7.0";
+  version = "0.8.0";
   pname = "sc-im";
 
   src = fetchFromGitHub {
     owner = "andmarti1424";
     repo = "sc-im";
     rev = "v${version}";
-    sha256 = "0xi0n9qzby012y2j7hg4fgcwyly698sfi4i9gkvy0q682jihprbk";
+    sha256 = "sha256-/eG2BdkyfEGoSzPu6jT+Bn1RZTGT1D3etGj1tYchm1M=";
   };
 
   nativeBuildInputs = [ pkg-config ];

From 49f8234fb4c055bf32aeca7481a2e225647c6a52 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?= <dev@schuetz-co.de>
Date: Sat, 20 Mar 2021 12:35:55 +0100
Subject: [PATCH 02/16] sc-im: modernize expression and support gnuplot

---
 pkgs/applications/misc/sc-im/default.nix | 53 +++++++++++++++---------
 1 file changed, 33 insertions(+), 20 deletions(-)

diff --git a/pkgs/applications/misc/sc-im/default.nix b/pkgs/applications/misc/sc-im/default.nix
index 833d1403d24..ad25e4f8b1c 100644
--- a/pkgs/applications/misc/sc-im/default.nix
+++ b/pkgs/applications/misc/sc-im/default.nix
@@ -1,8 +1,20 @@
-{ lib, stdenv, fetchFromGitHub, yacc, ncurses, libxml2, libzip, libxls, pkg-config }:
+{ lib
+, stdenv
+, fetchFromGitHub
+, makeWrapper
+, pkg-config
+, which
+, yacc
+, gnuplot
+, libxls
+, libxml2
+, libzip
+, ncurses
+}:
 
 stdenv.mkDerivation rec {
-  version = "0.8.0";
   pname = "sc-im";
+  version = "0.8.0";
 
   src = fetchFromGitHub {
     owner = "andmarti1424";
@@ -11,33 +23,34 @@ stdenv.mkDerivation rec {
     sha256 = "sha256-/eG2BdkyfEGoSzPu6jT+Bn1RZTGT1D3etGj1tYchm1M=";
   };
 
-  nativeBuildInputs = [ pkg-config ];
-  buildInputs = [ yacc ncurses libxml2 libzip libxls ];
+  sourceRoot = "${src.name}/src";
 
-  buildPhase = ''
-    cd src
+  nativeBuildInputs = [
+    makeWrapper
+    pkg-config
+    which
+    yacc
+  ];
 
-    sed 's/LDLIBS += -lm/& -lncurses/' -i Makefile
+  buildInputs = [
+    gnuplot
+    libxls
+    libxml2
+    libzip
+    ncurses
+  ];
 
-    sed -e "\|^prefix  = /usr/local|   s|/usr/local|$out|" \
-        -e "\|^#LDLIBS += -lxlsreader| s|^#||            " \
-        -e "\|^#CFLAGS += -DXLS|       s|^#||            " \
-        -i Makefile
+  makeFlags = [ "prefix=${placeholder "out"}" ];
 
-    make
-    export DESTDIR=$out
-  '';
-
-  installPhase = ''
-    make install prefix=
+  postInstall = ''
+    wrapProgram "$out/bin/sc-im" --prefix PATH : "${lib.makeBinPath [ gnuplot ]}"
   '';
 
   meta = with lib; {
     homepage = "https://github.com/andmarti1424/sc-im";
-    description = "SC-IM - Spreadsheet Calculator Improvised - SC fork";
+    description = "An ncurses spreadsheet program for terminal";
     license = licenses.bsdOriginal;
-    maintainers = [ ];
+    maintainers = with maintainers; [ dotlambda ];
     platforms = platforms.unix;
   };
-
 }

From 4e9627f8b13f00a4d219bda00d02cced3d80ff3a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?= <dev@schuetz-co.de>
Date: Sat, 20 Mar 2021 13:59:02 +0100
Subject: [PATCH 03/16] sc-im: make default colors readable on dark background

---
 pkgs/applications/misc/sc-im/default.nix | 15 +++++++++++++++
 1 file changed, 15 insertions(+)

diff --git a/pkgs/applications/misc/sc-im/default.nix b/pkgs/applications/misc/sc-im/default.nix
index ad25e4f8b1c..523dc6aab83 100644
--- a/pkgs/applications/misc/sc-im/default.nix
+++ b/pkgs/applications/misc/sc-im/default.nix
@@ -1,6 +1,7 @@
 { lib
 , stdenv
 , fetchFromGitHub
+, fetchpatch
 , makeWrapper
 , pkg-config
 , which
@@ -25,6 +26,20 @@ stdenv.mkDerivation rec {
 
   sourceRoot = "${src.name}/src";
 
+  # make default colors readable on dark background
+  patches = [
+    (fetchpatch {
+      url = "https://github.com/andmarti1424/sc-im/commit/78d2fdaaf2c578691e68fb5bd773803cb967ddba.patch";
+      sha256 = "09716zsqa9qdsj2qpkji8wlzsmp9gl66ggvrg7lmrwwnvli2zn2w";
+    })
+    (fetchpatch {
+      url = "https://github.com/andmarti1424/sc-im/commit/f29d6605c8170febcec0dea7bda9613bee3b7011.patch";
+      sha256 = "1zs1sb23g0k6lig4d0qdzq1wdhcdzl424ch567zyjl191lyhsjyg";
+    })
+  ];
+
+  patchFlags = [ "-p2" ];
+
   nativeBuildInputs = [
     makeWrapper
     pkg-config

From 3ced681d2ce92c9cdc4725f912e5220013e96584 Mon Sep 17 00:00:00 2001
From: Flakebi <flakebi@t-online.de>
Date: Mon, 15 Mar 2021 23:49:53 +0100
Subject: [PATCH 04/16] kakounePlugins: update

---
 .../editors/kakoune/plugins/generated.nix     | 26 +++++++++----------
 1 file changed, 13 insertions(+), 13 deletions(-)

diff --git a/pkgs/applications/editors/kakoune/plugins/generated.nix b/pkgs/applications/editors/kakoune/plugins/generated.nix
index 3ea3ea51478..ab3f9460fae 100644
--- a/pkgs/applications/editors/kakoune/plugins/generated.nix
+++ b/pkgs/applications/editors/kakoune/plugins/generated.nix
@@ -29,24 +29,24 @@ let
 
   connect-kak = buildKakounePluginFrom2Nix {
     pname = "connect-kak";
-    version = "2021-02-13";
+    version = "2021-02-24";
     src = fetchFromGitHub {
       owner = "alexherbo2";
       repo = "connect.kak";
-      rev = "0858c0e50c6ca6d214fb088f052385a242548e83";
-      sha256 = "1w4pwybg3v916hcyc49gz0blygv54ivv81x8fxp44ck0sy98idr3";
+      rev = "a536605a208149eed58986bda54f3dda215dfe61";
+      sha256 = "1svw64zk28sn271vjyzvq21zaln13vnx59rxnxah6adq8n5nkr4a";
     };
     meta.homepage = "https://github.com/alexherbo2/connect.kak/";
   };
 
   fzf-kak = buildKakounePluginFrom2Nix {
     pname = "fzf-kak";
-    version = "2021-01-27";
+    version = "2021-03-15";
     src = fetchFromGitHub {
       owner = "andreyorst";
       repo = "fzf.kak";
-      rev = "e10de405e2a98e910d0808059200d206ba80f865";
-      sha256 = "1hbsm1k8k0cgv7gxqicvnl22n2lb1plhkanniggk694gll22lq68";
+      rev = "4e6c9a857511fccdbbc835a1c9acb205b6486a4c";
+      sha256 = "0syhhdlsm7vg6hcd2n2acag9g562z49rbb5smh5p2gnplhmp93i0";
     };
     meta.homepage = "https://github.com/andreyorst/fzf.kak/";
   };
@@ -149,23 +149,23 @@ let
 
   powerline-kak = buildKakounePluginFrom2Nix {
     pname = "powerline-kak";
-    version = "2021-02-15";
+    version = "2021-02-25";
     src = fetchFromGitHub {
-      owner = "jdugan6240";
+      owner = "andreyorst";
       repo = "powerline.kak";
-      rev = "322a760daa099d519ff50d14c29b27f3e2af00d1";
-      sha256 = "0mb8f8p6g75p05ifp45i0gbq2mib8c8giz7r1xfd0yrwspp4aksc";
+      rev = "64ad98b6c85e63345563671b043960464d51c4b0";
+      sha256 = "09w2sk19qi64hgsyg4gb407vyppnlgk272mqbinz2r3apy6szkl3";
     };
-    meta.homepage = "https://github.com/jdugan6240/powerline.kak/";
+    meta.homepage = "https://github.com/andreyorst/powerline.kak/";
   };
 
   prelude-kak = buildKakounePluginFrom2Nix {
     pname = "prelude-kak";
-    version = "2020-09-06";
+    version = "2021-02-24";
     src = fetchFromGitHub {
       owner = "alexherbo2";
       repo = "prelude.kak";
-      rev = "f1e0f4d5cb62a36924e3f8ba6824d6aed8c19d23";
+      rev = "5dbdc020c546032885c1fdb463e366cc89fc15ad";
       sha256 = "1pncr8azqvl2z9yvzhc68p1s9fld8cvak8yz88zgrp5ypx2cxl8c";
     };
     meta.homepage = "https://github.com/alexherbo2/prelude.kak/";

From 188b23fb323baf0f05e021cc2adf40f83bce3f58 Mon Sep 17 00:00:00 2001
From: Flakebi <flakebi@t-online.de>
Date: Mon, 15 Mar 2021 23:49:55 +0100
Subject: [PATCH 05/16] kakounePlugins: resolve github repository redirects

---
 pkgs/applications/editors/kakoune/plugins/generated.nix   | 8 ++++----
 .../editors/kakoune/plugins/kakoune-plugin-names          | 6 +++---
 2 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/pkgs/applications/editors/kakoune/plugins/generated.nix b/pkgs/applications/editors/kakoune/plugins/generated.nix
index ab3f9460fae..4fada31a0f5 100644
--- a/pkgs/applications/editors/kakoune/plugins/generated.nix
+++ b/pkgs/applications/editors/kakoune/plugins/generated.nix
@@ -31,12 +31,12 @@ let
     pname = "connect-kak";
     version = "2021-02-24";
     src = fetchFromGitHub {
-      owner = "alexherbo2";
+      owner = "kakounedotcom";
       repo = "connect.kak";
       rev = "a536605a208149eed58986bda54f3dda215dfe61";
       sha256 = "1svw64zk28sn271vjyzvq21zaln13vnx59rxnxah6adq8n5nkr4a";
     };
-    meta.homepage = "https://github.com/alexherbo2/connect.kak/";
+    meta.homepage = "https://github.com/kakounedotcom/connect.kak/";
   };
 
   fzf-kak = buildKakounePluginFrom2Nix {
@@ -163,12 +163,12 @@ let
     pname = "prelude-kak";
     version = "2021-02-24";
     src = fetchFromGitHub {
-      owner = "alexherbo2";
+      owner = "kakounedotcom";
       repo = "prelude.kak";
       rev = "5dbdc020c546032885c1fdb463e366cc89fc15ad";
       sha256 = "1pncr8azqvl2z9yvzhc68p1s9fld8cvak8yz88zgrp5ypx2cxl8c";
     };
-    meta.homepage = "https://github.com/alexherbo2/prelude.kak/";
+    meta.homepage = "https://github.com/kakounedotcom/prelude.kak/";
   };
 
   replace-mode-kak = buildKakounePluginFrom2Nix {
diff --git a/pkgs/applications/editors/kakoune/plugins/kakoune-plugin-names b/pkgs/applications/editors/kakoune/plugins/kakoune-plugin-names
index 6cd856cb6c2..b1874146089 100644
--- a/pkgs/applications/editors/kakoune/plugins/kakoune-plugin-names
+++ b/pkgs/applications/editors/kakoune/plugins/kakoune-plugin-names
@@ -1,16 +1,16 @@
 alexherbo2/auto-pairs.kak
-alexherbo2/connect.kak
-alexherbo2/prelude.kak
 alexherbo2/replace-mode.kak
 alexherbo2/sleuth.kak
 andreyorst/fzf.kak
+andreyorst/powerline.kak
 danr/kakoune-easymotion
 Delapouite/kakoune-buffers
 Delapouite/kakoune-registers
 enricozb/tabs.kak@main
 greenfork/active-window.kak
-jdugan6240/powerline.kak
 kakoune-editor/kakoune-extra-filetypes
+kakounedotcom/connect.kak
+kakounedotcom/prelude.kak
 listentolist/kakoune-rainbow
 mayjs/openscad.kak
 occivink/kakoune-buffer-switcher

From 04184cd64f5c38cb5a9f882d2026f8663e6742c8 Mon Sep 17 00:00:00 2001
From: Flakebi <flakebi@t-online.de>
Date: Mon, 22 Mar 2021 22:56:44 +0100
Subject: [PATCH 06/16] scripts.pluginupdate: write final newline

json.dump does not write any newline, so the final newline in the file
is missing.
---
 maintainers/scripts/pluginupdate.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/maintainers/scripts/pluginupdate.py b/maintainers/scripts/pluginupdate.py
index 9ac1ccffb78..00a205313be 100644
--- a/maintainers/scripts/pluginupdate.py
+++ b/maintainers/scripts/pluginupdate.py
@@ -416,6 +416,7 @@ def rewrite_input(
                 }
         with open(deprecated, "w") as f:
             json.dump(deprecations, f, indent=4, sort_keys=True)
+            f.write("\n")
 
     lines = sorted(lines, key=str.casefold)
 

From 36497c2fde743f300b54920901ae308d57cb2863 Mon Sep 17 00:00:00 2001
From: Andrei Pampu <pampu.s.andrei@gmail.com>
Date: Wed, 24 Mar 2021 10:18:33 +0200
Subject: [PATCH 07/16] radarr: 0.2.0.1504 -> 3.0.2.4552

Use dotnet core instead of mono, change license to gpl3Only, add test passthru and create update script
---
 pkgs/servers/radarr/default.nix | 39 ++++++++++++++++++++++--------
 pkgs/servers/radarr/update.sh   | 42 +++++++++++++++++++++++++++++++++
 2 files changed, 71 insertions(+), 10 deletions(-)
 create mode 100755 pkgs/servers/radarr/update.sh

diff --git a/pkgs/servers/radarr/default.nix b/pkgs/servers/radarr/default.nix
index ae019515627..47edb29723e 100644
--- a/pkgs/servers/radarr/default.nix
+++ b/pkgs/servers/radarr/default.nix
@@ -1,12 +1,26 @@
-{ lib, stdenv, fetchurl, mono, libmediainfo, sqlite, curl, makeWrapper }:
+{ lib, stdenv, fetchurl, mono, libmediainfo, sqlite, curl, makeWrapper, icu, dotnetCorePackages, openssl, nixosTests }:
 
-stdenv.mkDerivation rec {
+let
+  os = if stdenv.isDarwin then "osx" else "linux";
+  arch = {
+    x86_64-linux = "x64";
+    aarch64-linux = "arm64";
+    x86_64-darwin = "x64";
+  }."${stdenv.hostPlatform.system}" or (throw "Unsupported system: ${stdenv.hostPlatform.system}");
+
+  hash = {
+    x64-linux_hash = "sha256-bTh+Z5w5ZkL2iPteStqVcoFDGZIbpVjuXn20TZsfgtY=";
+    arm64-linux_hash = "sha256-aIzVSIRuGNiIFJPToXCQwYsbICKuPtwKATnQhkxvJuA=";
+    x64-osx_hash = "sha256-FxRSAJvRQya2x1kei6yRceGcyQ2mCaFveyeMGw0Jqw4=";
+  }."${arch}-${os}_hash";
+
+in stdenv.mkDerivation rec {
   pname = "radarr";
-  version = "0.2.0.1504";
+  version = "3.0.2.4552";
 
   src = fetchurl {
-    url = "https://github.com/Radarr/Radarr/releases/download/v${version}/Radarr.develop.${version}.linux.tar.gz";
-    sha256 = "1h7pqn39vxd0vr1fwrnvfpxv5vhh4zcr0s8h0zvgplay2z6b6bvb";
+    url = "https://github.com/Radarr/Radarr/releases/download/v${version}/Radarr.master.${version}.${os}-core-${arch}.tar.gz";
+    sha256 = hash;
   };
 
   nativeBuildInputs = [ makeWrapper ];
@@ -15,17 +29,22 @@ stdenv.mkDerivation rec {
     mkdir -p $out/{bin,share/${pname}-${version}}
     cp -r * $out/share/${pname}-${version}/.
 
-    makeWrapper "${mono}/bin/mono" $out/bin/Radarr \
-      --add-flags "$out/share/${pname}-${version}/Radarr.exe" \
+    makeWrapper "${dotnetCorePackages.netcore_3_1}/bin/dotnet" $out/bin/Radarr \
+      --add-flags "$out/share/${pname}-${version}/Radarr.dll" \
       --prefix LD_LIBRARY_PATH : ${lib.makeLibraryPath [
-          curl sqlite libmediainfo ]}
+        curl sqlite libmediainfo mono openssl icu ]}
   '';
 
+  passthru = {
+    updateScript = ./update.sh;
+    tests.smoke-test = nixosTests.radarr;
+  };
+
   meta = with lib; {
     description = "A Usenet/BitTorrent movie downloader";
     homepage = "https://radarr.video/";
-    license = licenses.gpl3;
+    license = licenses.gpl3Only;
     maintainers = with maintainers; [ edwtjo purcell ];
-    platforms = platforms.all;
+    platforms = [ "x86_64-linux" "aarch64-linux" "x86_64-darwin" ];
   };
 }
diff --git a/pkgs/servers/radarr/update.sh b/pkgs/servers/radarr/update.sh
new file mode 100755
index 00000000000..ad5364ec721
--- /dev/null
+++ b/pkgs/servers/radarr/update.sh
@@ -0,0 +1,42 @@
+#!/usr/bin/env nix-shell
+#!nix-shell -i bash -p curl nix-prefetch jq
+
+set -e
+
+dirname="$(dirname "$0")"
+
+updateHash()
+{
+    version=$1
+    arch=$2
+    os=$3
+
+    hashKey="${arch}-${os}_hash"
+
+    url="https://github.com/Radarr/Radarr/releases/download/v$version/Radarr.master.$version.$os-core-$arch.tar.gz"
+    hash=$(nix-prefetch-url --type sha256 $url)
+    sriHash="$(nix to-sri --type sha256 $hash)"
+
+    sed -i "s/$hashKey = \"[a-zA-Z0-9\/+-=]*\";/$hashKey = \"$sriHash\";/g" "$dirname/default.nix"
+}
+
+updateVersion()
+{
+    sed -i "s/version = \"[0-9.]*\";/version = \"$1\";/g" "$dirname/default.nix"
+}
+
+currentVersion=$(cd $dirname && nix eval --raw '(with import ../../.. {}; radarr.version)')
+
+latestTag=$(curl https://api.github.com/repos/Radarr/Radarr/releases/latest | jq -r ".tag_name")
+latestVersion="$(expr $latestTag : 'v\(.*\)')"
+
+if [[ "$currentVersion" == "$latestVersion" ]]; then
+    echo "Radarr is up-to-date: ${currentVersion}"
+    exit 0
+fi
+
+updateVersion $latestVersion
+
+updateHash $latestVersion x64 linux
+updateHash $latestVersion arm64 linux
+updateHash $latestVersion x64 osx

From 1ab59fc7164179306b508c7669d9899180cfa62d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?= <dev@schuetz-co.de>
Date: Wed, 24 Mar 2021 19:52:27 +0100
Subject: [PATCH 08/16] igraph: 0.8.5 -> 0.9.1

---
 pkgs/development/libraries/igraph/default.nix | 100 +++++++++++++++---
 1 file changed, 88 insertions(+), 12 deletions(-)

diff --git a/pkgs/development/libraries/igraph/default.nix b/pkgs/development/libraries/igraph/default.nix
index b98588eb410..bcd0fcee92c 100644
--- a/pkgs/development/libraries/igraph/default.nix
+++ b/pkgs/development/libraries/igraph/default.nix
@@ -1,20 +1,43 @@
-{ stdenv, lib, fetchFromGitHub,
-  pkg-config, autoreconfHook,
-  flex, yacc, zlib, libxml2 }:
+{ stdenv
+, lib
+, fetchFromGitHub
+, fetchpatch
+, arpack
+, bison
+, blas
+, cmake
+, flex
+, fop
+, glpk
+, gmp
+, lapack
+, libxml2
+, libxslt
+, pkg-config
+, python3
+, sourceHighlight
+, suitesparse
+, xmlto
+}:
 
 stdenv.mkDerivation rec {
   pname = "igraph";
-  version = "0.8.5";
+  version = "0.9.1";
 
   src = fetchFromGitHub {
     owner = "igraph";
     repo = pname;
     rev = version;
-    sha256 = "0cb0kp6mpmgz74kbymqw4xxads8ff7jh0n59dsm76xy6nn8hpqcz";
+    sha256 = "sha256-i6Zg6bfHZ9NHwqCouX9m9YqD0VtiWW8DEkxS0hdUyIE=";
   };
 
-  nativeBuildInputs = [ pkg-config autoreconfHook ];
-  buildInputs = [ flex yacc zlib libxml2 ];
+  patches = [
+    (fetchpatch {
+      name = "pkg-config-paths.patch";
+      url = "https://github.com/igraph/igraph/commit/980521cc948777df471893f7b6de8f3e3916a3c0.patch";
+      sha256 = "0mbq8v5h90c3dhgmyjazjvva3rn57qhnv7pkc9hlbqdln9gpqg0g";
+    })
+  ];
 
   # Normally, igraph wants us to call bootstrap.sh, which will call
   # tools/getversion.sh. Instead, we're going to put the version directly
@@ -22,16 +45,69 @@ stdenv.mkDerivation rec {
   # bootstrap. ~ C.
   postPatch = ''
     echo "${version}" > IGRAPH_VERSION
+  '' + lib.optionalString stdenv.isAarch64 ''
+    # https://github.com/igraph/igraph/issues/1694
+    substituteInPlace tests/CMakeLists.txt \
+      --replace "igraph_scg_grouping3" "" \
+      --replace "igraph_scg_semiprojectors2" ""
   '';
 
+  outputs = [ "out" "dev" "doc" ];
+
+  nativeBuildInputs = [
+    cmake
+    fop
+    libxml2
+    libxslt
+    pkg-config
+    python3
+    sourceHighlight
+    xmlto
+  ];
+
+  buildInputs = [
+    arpack
+    bison
+    blas
+    flex
+    glpk
+    gmp
+    lapack
+    libxml2
+    suitesparse
+  ];
+
+  cmakeFlags = [
+    "-DIGRAPH_USE_INTERNAL_BLAS=OFF"
+    "-DIGRAPH_USE_INTERNAL_LAPACK=OFF"
+    "-DIGRAPH_USE_INTERNAL_ARPACK=OFF"
+    "-DIGRAPH_USE_INTERNAL_GLPK=OFF"
+    "-DIGRAPH_USE_INTERNAL_CXSPARSE=OFF"
+    "-DIGRAPH_USE_INTERNAL_GMP=OFF"
+    "-DIGRAPH_GLPK_SUPPORT=ON"
+    "-DIGRAPH_GRAPHML_SUPPORT=ON"
+    "-DIGRAPH_ENABLE_LTO=ON"
+    "-DIGRAPH_ENABLE_TLS=ON"
+    "-DBUILD_SHARED_LIBS=ON"
+  ];
+
   doCheck = true;
 
-  meta = {
+  preCheck = ''
+    # needed to find libigraph.so
+    export LD_LIBRARY_PATH="$PWD/src"
+  '';
+
+  postInstall = ''
+    mkdir -p "$out/share"
+    cp -r doc "$out/share"
+  '';
+
+  meta = with lib; {
     description = "The network analysis package";
     homepage = "https://igraph.org/";
-    license = lib.licenses.gpl2;
-    # NB: Known to fail tests on aarch64.
-    platforms = [ "x86_64-linux" ] ++ lib.platforms.darwin;
-    maintainers = [ lib.maintainers.MostAwesomeDude ];
+    license = licenses.gpl2Plus;
+    platforms = platforms.all;
+    maintainers = with maintainers; [ MostAwesomeDude dotlambda ];
   };
 }

From 5c3da3f7add7454b3ec06976f9e42cbe633f6477 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?= <dev@schuetz-co.de>
Date: Wed, 24 Mar 2021 20:03:47 +0100
Subject: [PATCH 09/16] python3Packages.python-igraph: 0.8.3 -> 0.9.1

---
 .../python-modules/python-igraph/default.nix  | 52 +++++++++++++------
 1 file changed, 37 insertions(+), 15 deletions(-)

diff --git a/pkgs/development/python-modules/python-igraph/default.nix b/pkgs/development/python-modules/python-igraph/default.nix
index 728d47b1f96..8e90ce5190f 100644
--- a/pkgs/development/python-modules/python-igraph/default.nix
+++ b/pkgs/development/python-modules/python-igraph/default.nix
@@ -1,32 +1,54 @@
-{ buildPythonPackage, fetchPypi, lib, isPy3k
-, pkg-config, igraph
-, texttable }:
+{ lib
+, buildPythonPackage
+, pythonOlder
+, fetchFromGitHub
+, pkg-config
+, igraph
+, texttable
+, python
+}:
 
 buildPythonPackage rec {
   pname = "python-igraph";
-  version = "0.8.3";
-  disabled = !isPy3k; # fails to build
+  version = "0.9.1";
 
-  nativeBuildInputs = [ pkg-config ];
-  buildInputs = [ igraph ];
-  propagatedBuildInputs = [ texttable ];
+  disabled = pythonOlder "3.6";
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "e1f27622eddeb2bd5fdcbadb41ef048e884790bb050f9627c086dc609d0f1236";
+  src = fetchFromGitHub {
+    owner = "igraph";
+    repo = "python-igraph";
+    rev = version;
+    sha256 = "1ldyzza25zvwh144lw8x856z76s8gfvnbdm56fcmwkvm7aj81npw";
   };
 
+  nativeBuildInputs = [
+    pkg-config
+  ];
+
+  buildInputs = [
+    igraph
+    igraph.dev
+  ];
+
+  propagatedBuildInputs = [
+    texttable
+  ];
+
   # NB: We want to use our igraph, not vendored igraph, but even with
   # pkg-config on the PATH, their custom setup.py still needs to be explicitly
   # told to do it. ~ C.
   setupPyGlobalFlags = [ "--use-pkg-config" ];
 
-  doCheck = !isPy3k;
+  checkPhase = ''
+    ${python.interpreter} -m unittest
+  '';
 
-  meta = {
+  pythonImportsCheck = [ "igraph" ];
+
+  meta = with lib; {
     description = "High performance graph data structures and algorithms";
     homepage = "https://igraph.org/python/";
-    license = lib.licenses.gpl2;
-    maintainers = [ lib.maintainers.MostAwesomeDude ];
+    license = licenses.gpl2Plus;
+    maintainers = with maintainers; [ MostAwesomeDude dotlambda ];
   };
 }

From a49e2d27f6397f63f946a00d4cdace0e0aec627c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Eduardo=20S=C3=A1nchez=20Mu=C3=B1oz?= <esm@eduardosm.net>
Date: Thu, 25 Mar 2021 19:05:55 +0100
Subject: [PATCH 10/16] vistafonts: fix build

Build was previously failing with
```
/build/file: no valid cabinets found
```

Additonaly, a faster download mirror is used. The downloaded file is not identical to the one from the previous mirror, but the produced result is unchanged.
---
 pkgs/data/fonts/vista-fonts/default.nix | 24 +++++++++++++++---------
 1 file changed, 15 insertions(+), 9 deletions(-)

diff --git a/pkgs/data/fonts/vista-fonts/default.nix b/pkgs/data/fonts/vista-fonts/default.nix
index 20b5b673ccf..ca2ae302b3e 100644
--- a/pkgs/data/fonts/vista-fonts/default.nix
+++ b/pkgs/data/fonts/vista-fonts/default.nix
@@ -1,14 +1,22 @@
-{ lib, fetchzip, cabextract }:
+{ lib, stdenvNoCC, fetchurl, cabextract }:
 
-fetchzip {
-  name = "vista-fonts-1";
+stdenvNoCC.mkDerivation {
+  pname = "vista-fonts";
+  version = "1";
 
-  url = "https://web.archive.org/web/20171225132744/http://download.microsoft.com/download/E/6/7/E675FFFC-2A6D-4AB0-B3EB-27C9F8C8F696/PowerPointViewer.exe";
+  src = fetchurl {
+    url = "mirror://sourceforge/mscorefonts2/cabs/PowerPointViewer.exe";
+    sha256 = "07vhjdw8iip7gxk6wvp4myhvbn9619g10j9qvpbzz4ihima57ry4";
+  };
 
-  postFetch = ''
-    ${cabextract}/bin/cabextract --lowercase --filter ppviewer.cab $downloadedFile
-    ${cabextract}/bin/cabextract --lowercase --filter '*.TTF' ppviewer.cab
+  nativeBuildInputs = [ cabextract ];
 
+  unpackPhase = ''
+    cabextract --lowercase --filter ppviewer.cab $src
+    cabextract --lowercase --filter '*.TTF' ppviewer.cab
+  '';
+
+  installPhase = ''
     mkdir -p $out/share/fonts/truetype
     cp *.ttf $out/share/fonts/truetype
 
@@ -21,8 +29,6 @@ fetchzip {
     done
   '';
 
-  sha256 = "sha256-x7JSXS9Q1fzlJTVR+MAS3f2+cmo/H0s1qkY9FPjx2zI=";
-
   meta = {
     description = "Some TrueType fonts from Microsoft Windows Vista (Calibri, Cambria, Candara, Consolas, Constantia, Corbel)";
     homepage = "http://www.microsoft.com/typography/ClearTypeFonts.mspx";

From a82ecfbde29afba45b0c23fac0c7450a30ad4451 Mon Sep 17 00:00:00 2001
From: xfnw <xfnw@riseup.net>
Date: Fri, 26 Mar 2021 16:58:22 -0400
Subject: [PATCH 11/16] maintainers: add xfnw

---
 maintainers/maintainer-list.nix | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index 309cd5eb963..4765c05b98c 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -10268,6 +10268,12 @@
     githubId = 36407913;
     name = "Uli Baum";
   };
+  xfnw = {
+    email = "xfnw+nixos@riseup.net";
+    github = "xfnw";
+    githubId = 66233223;
+    name = "Owen";
+  };
   xfix = {
     email = "konrad@borowski.pw";
     github = "xfix";

From 96b9e5353e6f88368ab4121b52035858d5d4eac5 Mon Sep 17 00:00:00 2001
From: xfnw <xfnw@riseup.net>
Date: Fri, 26 Mar 2021 16:58:40 -0400
Subject: [PATCH 12/16] catgirl: init at 1.6

---
 .../networking/irc/catgirl/default.nix        | 23 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 25 insertions(+)
 create mode 100644 pkgs/applications/networking/irc/catgirl/default.nix

diff --git a/pkgs/applications/networking/irc/catgirl/default.nix b/pkgs/applications/networking/irc/catgirl/default.nix
new file mode 100644
index 00000000000..871dcc84c1d
--- /dev/null
+++ b/pkgs/applications/networking/irc/catgirl/default.nix
@@ -0,0 +1,23 @@
+{ ctags, fetchurl, lib, libressl, man, ncurses, pkg-config, stdenv }:
+
+stdenv.mkDerivation rec {
+  pname = "catgirl";
+  version = "1.6";
+
+  src = fetchurl {
+    url = "https://git.causal.agency/catgirl/snapshot/${pname}-${version}.tar.gz";
+    sha256 = "0shg02zidqqmvywqqsaazlgg9rd5lhhrvjx6n0lzmdfaawxywciv";
+  };
+
+  nativeBuildInputs = [ ctags pkg-config ];
+  buildInputs = [ libressl man ncurses ];
+  strictDeps = true;
+
+  meta = with lib; {
+    homepage = "https://git.causal.agency/catgirl/about/";
+    license = licenses.gpl3Plus;
+    description = "A TLS-only terminal IRC client";
+    platforms = platforms.unix;
+    maintainers = with maintainers; [ xfnw ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index f9e9f1faa66..250b112425c 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21641,6 +21641,8 @@ in
 
   catfs = callPackage ../os-specific/linux/catfs { };
 
+  catgirl = callPackage ../applications/networking/irc/catgirl { };
+
   catimg = callPackage ../tools/misc/catimg { };
 
   catt = callPackage ../applications/video/catt { };

From ae4fac9f4b727d44ecdc92045abbb934e80cf901 Mon Sep 17 00:00:00 2001
From: Michael Francis <edude03@gmail.com>
Date: Fri, 26 Mar 2021 17:04:37 -0400
Subject: [PATCH 13/16] Use minimal git for fetching gems

---
 pkgs/development/ruby-modules/gem/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/ruby-modules/gem/default.nix b/pkgs/development/ruby-modules/gem/default.nix
index 02af8eaa967..20667988548 100644
--- a/pkgs/development/ruby-modules/gem/default.nix
+++ b/pkgs/development/ruby-modules/gem/default.nix
@@ -18,7 +18,7 @@
 # Normal gem packages can be used outside of bundler; a binstub is created in
 # $out/bin.
 
-{ lib, fetchurl, fetchgit, makeWrapper, git, darwin
+{ lib, fetchurl, fetchgit, makeWrapper, gitMinimal, darwin
 , ruby, bundler
 } @ defs:
 
@@ -89,7 +89,7 @@ stdenv.mkDerivation ((builtins.removeAttrs attrs ["source"]) // {
 
   buildInputs = [
     ruby makeWrapper
-  ] ++ lib.optionals (type == "git") [ git ]
+  ] ++ lib.optionals (type == "git") [ gitMinimal ]
     ++ lib.optionals (type != "gem") [ bundler ]
     ++ lib.optional stdenv.isDarwin darwin.libobjc
     ++ buildInputs;

From 8887f4655e035c7d20f8d1443b0446ceb721d0a2 Mon Sep 17 00:00:00 2001
From: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Date: Fri, 26 Mar 2021 18:32:26 -0400
Subject: [PATCH 14/16] snakemake: 5.28.0 -> 6.0.5

---
 pkgs/applications/science/misc/snakemake/default.nix | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/science/misc/snakemake/default.nix b/pkgs/applications/science/misc/snakemake/default.nix
index edf26f7ec23..b2afc4701a5 100644
--- a/pkgs/applications/science/misc/snakemake/default.nix
+++ b/pkgs/applications/science/misc/snakemake/default.nix
@@ -2,13 +2,14 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "snakemake";
-  version = "5.28.0";
+  version = "6.0.5";
 
   propagatedBuildInputs = with python3Packages; [
     appdirs
     ConfigArgParse
     datrie
     docutils
+    filelock
     GitPython
     jsonschema
     nbformat
@@ -17,19 +18,20 @@ python3Packages.buildPythonApplication rec {
     pyyaml
     ratelimiter
     requests
+    smart_open
     toposort
     wrapt
   ];
 
   src = python3Packages.fetchPypi {
     inherit pname version;
-    sha256 = "2367ce91baf7f8fa7738d33aff9670ffdf5410bbac49aeb209f73b45a3425046";
+    sha256 = "9441169034cce46086a8b45486d75175db645b932e766d28fed312ec837792d3";
   };
 
   doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json
 
   meta = with lib; {
-    homepage = "https://snakemake.readthedocs.io";
+    homepage = "https://snakemake.github.io";
     license = licenses.mit;
     description = "Python-based execution environment for make-like workflows";
     longDescription = ''

From 4f173f616d3e8900a711f33dd62a8290791da8f8 Mon Sep 17 00:00:00 2001
From: Fabian Affolter <mail@fabian-affolter.ch>
Date: Sat, 27 Mar 2021 01:17:21 +0100
Subject: [PATCH 15/16] zgrab2: init at 20210327-17a5257

---
 pkgs/tools/security/zgrab2/default.nix | 28 ++++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix        |  4 +++-
 2 files changed, 31 insertions(+), 1 deletion(-)
 create mode 100644 pkgs/tools/security/zgrab2/default.nix

diff --git a/pkgs/tools/security/zgrab2/default.nix b/pkgs/tools/security/zgrab2/default.nix
new file mode 100644
index 00000000000..b8863a6a94e
--- /dev/null
+++ b/pkgs/tools/security/zgrab2/default.nix
@@ -0,0 +1,28 @@
+{ lib
+, buildGoModule
+, fetchFromGitHub
+}:
+
+buildGoModule rec {
+  pname = "zgrab2";
+  version = "20210327-${lib.strings.substring 0 7 rev}";
+  rev = "17a5257565c758e2b817511d15476d330be0a17a";
+
+  src = fetchFromGitHub {
+    owner = "zmap";
+    repo = pname;
+    inherit rev;
+    sha256 = "1hxk2jggj8lww97lwmks46i001p5ycnxnck8yya6d0fd3ayxvw2w";
+  };
+
+  vendorSha256 = "1s0azy5b5hi5h24vs6a9f1n70l980vkid28ihqh10zq6ajmds2z3";
+
+  subPackages = [ "cmd/zgrab2" ];
+
+  meta = with lib; {
+    description = "Web application scanner";
+    homepage = "https://github.com/zmap/zgrab2";
+    license = with licenses; [ asl20 isc ];
+    maintainers = with maintainers; [ fab ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index d53d3750606..f43920301c7 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -26692,7 +26692,9 @@ in
     autoconf = buildPackages.autoconf269;
   };
 
-  zgrviewer = callPackage ../applications/graphics/zgrviewer {};
+  zgrab2 = callPackage ../tools/security/zgrab2 { };
+
+  zgrviewer = callPackage ../applications/graphics/zgrviewer { };
 
   zgv = callPackage ../applications/graphics/zgv {
    # Enable the below line for terminal display. Note

From d696e4b875d25821a12abc43f50cc62905abe4fe Mon Sep 17 00:00:00 2001
From: InLaw <marsweb@gmx.de>
Date: Sat, 27 Mar 2021 02:51:18 +0100
Subject: [PATCH 16/16] add pname into python-modules/mxnet (#117101)

* add pname into python-modules/mxnet

Signed-off-by: P33_ae <marsweb@gmx.de>

* Update pkgs/development/python-modules/mxnet/default.nix

Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
---
 pkgs/development/python-modules/mxnet/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/mxnet/default.nix b/pkgs/development/python-modules/mxnet/default.nix
index 2ad3b9fd6df..47f4d80ad92 100644
--- a/pkgs/development/python-modules/mxnet/default.nix
+++ b/pkgs/development/python-modules/mxnet/default.nix
@@ -9,7 +9,7 @@
 }:
 
 buildPythonPackage {
-  inherit (pkgs.mxnet) name version src meta;
+  inherit (pkgs.mxnet) pname version src meta;
 
   buildInputs = [ pkgs.mxnet ];
   propagatedBuildInputs = [ requests numpy graphviz ];