diff --git a/pkgs/development/python-modules/palettable/default.nix b/pkgs/development/python-modules/palettable/default.nix new file mode 100644 index 00000000000..6b2113352b4 --- /dev/null +++ b/pkgs/development/python-modules/palettable/default.nix @@ -0,0 +1,25 @@ +{ stdenv, buildPythonPackage, fetchPypi, pytest }: + +buildPythonPackage rec { + pname = "palettable"; + version = "3.1.1"; + + src = fetchPypi { + inherit pname version; + sha256 = "0685b223a236bb7e2a900ef7a855ccf9a4027361c8acf400f3b350ea51870f80"; + }; + + checkInputs = [ pytest ]; + + checkPhase = '' + pytest + ''; + + meta = with stdenv.lib; { + description = "A library of color palettes"; + homepage = https://jiffyclub.github.io/palettable/; + license = licenses.mit; + maintainers = with maintainers; [ psyanticy ]; + }; +} + diff --git a/pkgs/development/python-modules/phonopy/default.nix b/pkgs/development/python-modules/phonopy/default.nix new file mode 100644 index 00000000000..57ddeeeb8ec --- /dev/null +++ b/pkgs/development/python-modules/phonopy/default.nix @@ -0,0 +1,27 @@ +{ stdenv, buildPythonPackage, python, fetchPypi, numpy, pyyaml, matplotlib, h5py }: + +buildPythonPackage rec { + pname = "phonopy"; + version = "1.13.2.13"; + + src = fetchPypi { + inherit pname version; + sha256 = "23970ecdf698e743f9204711e8edfbb33c97667f5f88c7bda3322abbc91d0682"; + }; + + propagatedBuildInputs = [ numpy pyyaml matplotlib h5py ]; + + checkPhase = '' + cd test/phonopy + ${python.interpreter} -m unittest discover -b + cd ../.. + ''; + + meta = with stdenv.lib; { + description = "A package for phonon calculations at harmonic and quasi-harmonic levels"; + homepage = https://atztogo.github.io/phonopy/; + license = licenses.bsd0; + maintainers = with maintainers; [ psyanticy ]; + }; +} + diff --git a/pkgs/development/python-modules/pymatgen/default.nix b/pkgs/development/python-modules/pymatgen/default.nix new file mode 100644 index 00000000000..874f7bfa308 --- /dev/null +++ b/pkgs/development/python-modules/pymatgen/default.nix @@ -0,0 +1,25 @@ +{ stdenv, buildPythonPackage, fetchPypi, glibcLocales, numpy, pydispatcher, sympy, requests, monty, ruamel_yaml, six, scipy, tabulate, enum34, matplotlib, palettable, spglib, pandas }: + +buildPythonPackage rec { + pname = "pymatgen"; + version = "2018.6.27"; + + src = fetchPypi { + inherit pname version; + sha256 = "8078af7fda4f9a07f1e389ffe08de3511213acdf9fb2ed9f9ffe89b9b12b8568"; + }; + + nativeBuildInputs = [ glibcLocales ]; + propagatedBuildInputs = [ numpy pydispatcher sympy requests monty ruamel_yaml six scipy tabulate enum34 matplotlib palettable spglib pandas ]; + + # No tests in pypi tarball. + doCheck = false; + + meta = with stdenv.lib; { + description = "A robust materials analysis code that defines core object representations for structures and molecules"; + homepage = http://pymatgen.org/; + license = licenses.mit; + maintainers = with maintainers; [ psyanticy ]; + }; +} + diff --git a/pkgs/development/python-modules/sumo/default.nix b/pkgs/development/python-modules/sumo/default.nix new file mode 100644 index 00000000000..1b82f1a4010 --- /dev/null +++ b/pkgs/development/python-modules/sumo/default.nix @@ -0,0 +1,24 @@ +{ stdenv, buildPythonPackage, fetchFromGitHub, numpy, scipy, spglib, pymatgen, h5py, matplotlib, seekpath, phonopy }: + +buildPythonPackage rec { + pname = "sumo"; + version = "1.0.9"; + + # No tests in Pypi tarball + src = fetchFromGitHub { + owner = "SMTG-UCL"; + repo = "sumo"; + rev = "v${version}"; + sha256 = "1zw86qp9ycw2k0anw6pzvwgd3zds0z2cwy0s663zhiv9mnb5hx1n"; + }; + + propagatedBuildInputs = [ numpy scipy spglib pymatgen h5py matplotlib seekpath phonopy ]; + + meta = with stdenv.lib; { + description = "Toolkit for plotting and analysis of ab initio solid-state calculation data"; + homepage = https://github.com/SMTG-UCL/sumo; + license = licenses.mit; + maintainers = with maintainers; [ psyanticy ]; + }; +} + diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 28cb0509e97..614736ce744 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -340,12 +340,16 @@ in { outcome = callPackage ../development/python-modules/outcome {}; + palettable = callPackage ../development/python-modules/palettable { }; + pdf2image = callPackage ../development/python-modules/pdf2image { }; pdfminer = callPackage ../development/python-modules/pdfminer_six { }; pdfx = callPackage ../development/python-modules/pdfx { }; + phonopy = callPackage ../development/python-modules/phonopy { }; + plantuml = callPackage ../tools/misc/plantuml { }; Pmw = callPackage ../development/python-modules/Pmw { }; @@ -420,6 +424,8 @@ in { }; pykerberos = callPackage ../development/python-modules/pykerberos { }; + + pymatgen = callPackage ../development/python-modules/pymatgen { }; pynisher = callPackage ../development/python-modules/pynisher { }; @@ -499,6 +505,8 @@ in { spglib = callPackage ../development/python-modules/spglib { }; + sumo = callPackage ../development/python-modules/sumo { }; + supervise_api = callPackage ../development/python-modules/supervise_api { }; syncserver = callPackage ../development/python-modules/syncserver {};