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Merge pull request #46745 from xeji/p/dendropy

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pythonPackages.dendropy: fix build
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Jörg Thalheim 2018-09-16 22:25:20 +01:00 committed by GitHub
commit dd0c2cf9e1
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1 changed files with 14 additions and 10 deletions
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pkgs/development/python-modules/dendropy/default.nix
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@ -1,29 +1,33 @@
{ lib { lib
, pkgs , pkgs
, buildPythonPackage , buildPythonPackage
, fetchPypi , fetchFromGitHub
, pytest
}: }:
buildPythonPackage rec { buildPythonPackage rec {
pname = "DendroPy"; pname = "DendroPy";
version = "4.4.0"; version = "4.4.0";
src = fetchPypi { # tests are incorrectly packaged in pypi version
inherit pname version; src = fetchFromGitHub {
sha256 = "f0a0e2ce78b3ed213d6c1791332d57778b7f63d602430c1548a5d822acf2799c"; owner = "jeetsukumaran";
repo = pname;
rev = "v${version}";
sha256 = "097hfyv2kaf4x92i4rjx0paw2cncxap48qivv8zxng4z7nhid0x9";
}; };
prePatch = ''
# Test removed/disabled and reported upstream: https://github.com/jeetsukumaran/DendroPy/issues/74
rm -f dendropy/test/test_dataio_nexml_reader_tree_list.py
'';
preCheck = '' preCheck = ''
# Needed for unicode python tests # Needed for unicode python tests
export LC_ALL="en_US.UTF-8" export LC_ALL="en_US.UTF-8"
cd tests # to find the 'support' module
''; '';
checkInputs = [ pkgs.glibcLocales ]; checkInputs = [ pytest pkgs.glibcLocales ];
checkPhase = ''
pytest -k 'not test_dataio_nexml_reader_tree_list and not test_pscores_with'
'';
meta = { meta = {
homepage = http://dendropy.org/; homepage = http://dendropy.org/;