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r-modules: update list of broken builds to avoid Hydra errors

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This commit is contained in:
Peter Simons 2015-11-18 12:38:37 +01:00
parent a5c168db4e
commit d7e6a46770
1 changed files with 74 additions and 0 deletions
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pkgs/development/r-modules/default.nix
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@ -764,28 +764,37 @@ let
"backShift" # broken build "backShift" # broken build
"BAGS" # build is broken "BAGS" # build is broken
"ballgown" # depends on broken package Rsamtools-1.21.8 "ballgown" # depends on broken package Rsamtools-1.21.8
"bamdit"
"bamsignals" # build is broken "bamsignals" # build is broken
"BANOVA"
"bapred" # depends on broken package r-lme4-1.1-9 "bapred" # depends on broken package r-lme4-1.1-9
"bartMachine" # depends on broken package nlopt-2.4.2 "bartMachine" # depends on broken package nlopt-2.4.2
"Basic4Cseq" # depends on broken package Rsamtools-1.21.8 "Basic4Cseq" # depends on broken package Rsamtools-1.21.8
"bayescount"
"bayesDem" # depends on broken package nlopt-2.4.2 "bayesDem" # depends on broken package nlopt-2.4.2
"bayesLife" # depends on broken package nlopt-2.4.2 "bayesLife" # depends on broken package nlopt-2.4.2
"BayesMed"
"bayesmix"
"BayesPeak" # broken build "BayesPeak" # broken build
"bayesPop" # depends on broken package nlopt-2.4.2 "bayesPop" # depends on broken package nlopt-2.4.2
"Bayesthresh" # depends on broken package nlopt-2.4.2 "Bayesthresh" # depends on broken package nlopt-2.4.2
"bayou" # broken build "bayou" # broken build
"baySeq" # broken build "baySeq" # broken build
"BaySIC"
"BBCAnalyzer" # depends on broken package r-Rsamtools-1.21.18 "BBCAnalyzer" # depends on broken package r-Rsamtools-1.21.18
"BBRecapture" # depends on broken package nlopt-2.4.2 "BBRecapture" # depends on broken package nlopt-2.4.2
"BCA" # depends on broken package nlopt-2.4.2 "BCA" # depends on broken package nlopt-2.4.2
"BcDiag" # broken build "BcDiag" # broken build
"BCRANK" # broken build "BCRANK" # broken build
"bcrypt"
"beadarray" # broken build "beadarray" # broken build
"beadarrayFilter" # broken build "beadarrayFilter" # broken build
"beadarrayMSV" # broken build "beadarrayMSV" # broken build
"beadarraySNP" # broken build "beadarraySNP" # broken build
"BEAT" # depends on broken package Rsamtools-1.21.8 "BEAT" # depends on broken package Rsamtools-1.21.8
"BEDMatrix" # broken build
"bedr" # broken build "bedr" # broken build
"BEST"
"betr" # broken build "betr" # broken build
"bgmm" # depends on broken package nlopt-2.4.2 "bgmm" # depends on broken package nlopt-2.4.2
"bgx" # depends on broken package affyio-1.37.0 "bgx" # depends on broken package affyio-1.37.0
@ -825,9 +834,11 @@ let
"blme" # depends on broken package nlopt-2.4.2 "blme" # depends on broken package nlopt-2.4.2
"bmd" # depends on broken package nlopt-2.4.2 "bmd" # depends on broken package nlopt-2.4.2
"bmem" # depends on broken package nlopt-2.4.2 "bmem" # depends on broken package nlopt-2.4.2
"bmeta" # depends on broken package r-R2jags-0.5-7
"BMhyd" # broken build "BMhyd" # broken build
"bnclassify" # broken build "bnclassify" # broken build
"bootnet" # depends on broken package nlopt-2.4.2 "bootnet" # depends on broken package nlopt-2.4.2
"boral"
"boss" # depends on broken package nlopt-2.4.2 "boss" # depends on broken package nlopt-2.4.2
"BradleyTerry2" # depends on broken package nlopt-2.4.2 "BradleyTerry2" # depends on broken package nlopt-2.4.2
"BrailleR" # broken build "BrailleR" # broken build
@ -839,6 +850,7 @@ let
"BRugs" # build is broken "BRugs" # build is broken
"BSgenome" # depends on broken package Rsamtools-1.21.8 "BSgenome" # depends on broken package Rsamtools-1.21.8
"bsseq" # broken build "bsseq" # broken build
"BTSPAS"
"BubbleTree" # depends on broken package r-biovizBase-1.17.2 "BubbleTree" # depends on broken package r-biovizBase-1.17.2
"bumphunter" # depends on broken package Rsamtools-1.21.8 "bumphunter" # depends on broken package Rsamtools-1.21.8
"CADFtest" # depends on broken package nlopt-2.4.2 "CADFtest" # depends on broken package nlopt-2.4.2
@ -863,6 +875,7 @@ let
"categoryCompare" # depends on broken package Category-2.35.1 "categoryCompare" # depends on broken package Category-2.35.1
"Causata" # broken build "Causata" # broken build
"CCpop" # depends on broken package nlopt-2.4.2 "CCpop" # depends on broken package nlopt-2.4.2
"CCTpack"
"cdcfluview" # broken build "cdcfluview" # broken build
"cellHTS2" # depends on broken package Category-2.35.1 "cellHTS2" # depends on broken package Category-2.35.1
"cellHTS" # broken build "cellHTS" # broken build
@ -893,6 +906,7 @@ let
"chromDraw" # broken build "chromDraw" # broken build
"ChromHeatMap" # depends on broken package Rsamtools-1.21.8 "ChromHeatMap" # depends on broken package Rsamtools-1.21.8
"classGraph" # broken build "classGraph" # broken build
"classify"
"ClassifyR" # broken build "ClassifyR" # broken build
"cleanUpdTSeq" # depends on broken package Rsamtools-1.21.8 "cleanUpdTSeq" # depends on broken package Rsamtools-1.21.8
"cleaver" # broken build "cleaver" # broken build
@ -957,6 +971,7 @@ let
"CRISPRseek" # depends on broken package Rsamtools-1.21.8 "CRISPRseek" # depends on broken package Rsamtools-1.21.8
"crlmm" # depends on broken package affyio-1.37.0 "crlmm" # depends on broken package affyio-1.37.0
"crmn" # broken build "crmn" # broken build
"crmPack" # depends on broken package r-rjags-4-4
"Crossover" # Build Is Broken "Crossover" # Build Is Broken
"CrypticIBDcheck" # depends on broken package nlopt-2.4.2 "CrypticIBDcheck" # depends on broken package nlopt-2.4.2
"CSAR" # broken build "CSAR" # broken build
@ -979,7 +994,9 @@ let
"dbConnect" # broken build "dbConnect" # broken build
"DBKGrad" # depends on broken package rpanel-1.1-3 "DBKGrad" # depends on broken package rpanel-1.1-3
"dcGOR" # broken build "dcGOR" # broken build
"dcmle"
"ddCt" # broken build "ddCt" # broken build
"DDD" # depends on broken package r-phytools-0.5-00
"ddgraph" # broken build "ddgraph" # broken build
"ddst" # broken build "ddst" # broken build
"DECIPHER" # broken build "DECIPHER" # broken build
@ -1036,6 +1053,7 @@ let
"dyebias" # broken build "dyebias" # broken build
"dynlm" # depends on broken package nlopt-2.4.2 "dynlm" # depends on broken package nlopt-2.4.2
"easyanova" # depends on broken package nlopt-2.4.2 "easyanova" # depends on broken package nlopt-2.4.2
"EasyMARK"
"easyRNASeq" # depends on broken package Rsamtools-1.21.8 "easyRNASeq" # depends on broken package Rsamtools-1.21.8
"EBarrays" # broken build "EBarrays" # broken build
"EBcoexpress" # broken build "EBcoexpress" # broken build
@ -1101,6 +1119,7 @@ let
"FIACH" # broken build "FIACH" # broken build
"FindMyFriends" # broken build "FindMyFriends" # broken build
"FISHalyseR" # broken build "FISHalyseR" # broken build
"fishmethods" # depends on broken package r-lme4-1.1-10
"flagme" # depends on broken package mzR-2.3.1 "flagme" # depends on broken package mzR-2.3.1
"flipflop" # broken build "flipflop" # broken build
"flowBeads" # broken build "flowBeads" # broken build
@ -1112,6 +1131,7 @@ let
"flowClust" # broken build "flowClust" # broken build
"flowCore" # broken build "flowCore" # broken build
"flowDensity" # depends on broken package nlopt-2.4.2 "flowDensity" # depends on broken package nlopt-2.4.2
"flowDiv" # depends on broken package r-flowCore-1.35.11
"flowFit" # broken build "flowFit" # broken build
"flowFP" # broken build "flowFP" # broken build
"flowMatch" # broken build "flowMatch" # broken build
@ -1142,6 +1162,7 @@ let
"fulltext" # broken build "fulltext" # broken build
"FunciSNP" # depends on broken package snpStats-1.19.0 "FunciSNP" # depends on broken package snpStats-1.19.0
"FunctionalNetworks" # Build Is Broken "FunctionalNetworks" # Build Is Broken
"funcy" # depends on broken package r-car-2.1-0
"fxregime" # depends on broken package nlopt-2.4.2 "fxregime" # depends on broken package nlopt-2.4.2
"gaga" # broken build "gaga" # broken build
"gage" # broken build "gage" # broken build
@ -1156,6 +1177,8 @@ let
"gcmr" # depends on broken package nlopt-2.4.2 "gcmr" # depends on broken package nlopt-2.4.2
"gcrma" # depends on broken package affyio-1.37.0 "gcrma" # depends on broken package affyio-1.37.0
"GDAtools" # depends on broken package nlopt-2.4.2 "GDAtools" # depends on broken package nlopt-2.4.2
"gdtools" # broken build
"gemtc"
"GeneAnswers" # broken build "GeneAnswers" # broken build
"GENE_E" # depends on broken package rhdf5-2.13.1 "GENE_E" # depends on broken package rhdf5-2.13.1
"GeneExpressionSignature" # depends on broken package annaffy-1.41.1 "GeneExpressionSignature" # depends on broken package annaffy-1.41.1
@ -1194,6 +1217,7 @@ let
"GEOquery" # broken build "GEOquery" # broken build
"GEOsearch" # broken build "GEOsearch" # broken build
"GEOsubmission" # depends on broken package affyio-1.37.0 "GEOsubmission" # depends on broken package affyio-1.37.0
"GERGM"
"gespeR" # depends on broken package Category-2.35.1 "gespeR" # depends on broken package Category-2.35.1
"GEWIST" # depends on broken package nlopt-2.4.2 "GEWIST" # depends on broken package nlopt-2.4.2
"GExMap" # broken build "GExMap" # broken build
@ -1210,6 +1234,7 @@ let
"gmapR" # depends on broken package Rsamtools-1.21.8 "gmapR" # depends on broken package Rsamtools-1.21.8
"gmatrix" # depends on broken package cudatoolkit-5.5.22 "gmatrix" # depends on broken package cudatoolkit-5.5.22
"gMCP" # build is broken "gMCP" # build is broken
"gmum_r" # broken build
"GOexpress" # broken build "GOexpress" # broken build
"GOFunction" # build is broken "GOFunction" # build is broken
"GOGANPA" # depends on broken package WGCNA-1.47 "GOGANPA" # depends on broken package WGCNA-1.47
@ -1219,6 +1244,7 @@ let
"GOSemSim" # Build Is Broken "GOSemSim" # Build Is Broken
"goseq" # build is broken "goseq" # build is broken
"GOSim" # depends on broken package topGO-2.21.0 "GOSim" # depends on broken package topGO-2.21.0
"Goslate" # depends on broken package r-PythonInR-0.1-2
"GOstats" # depends on broken package AnnotationForge-1.11.3 "GOstats" # depends on broken package AnnotationForge-1.11.3
"GOTHiC" # depends on broken package Rsamtools-1.21.8 "GOTHiC" # depends on broken package Rsamtools-1.21.8
"goTools" # build is broken "goTools" # build is broken
@ -1270,6 +1296,7 @@ let
"HEM" # broken build "HEM" # broken build
"heplots" # depends on broken package nlopt-2.4.2 "heplots" # depends on broken package nlopt-2.4.2
"hiAnnotator" # depends on broken package Rsamtools-1.21.8 "hiAnnotator" # depends on broken package Rsamtools-1.21.8
"HiCfeat" # depends on broken package r-GenomeInfoDb-1.5.16
"HiDimMaxStable" # broken build "HiDimMaxStable" # broken build
"hierGWAS" "hierGWAS"
"HierO" # Build Is Broken "HierO" # Build Is Broken
@ -1283,6 +1310,7 @@ let
"HiTC" # depends on broken package Rsamtools-1.21.8 "HiTC" # depends on broken package Rsamtools-1.21.8
"HLMdiag" # depends on broken package nlopt-2.4.2 "HLMdiag" # depends on broken package nlopt-2.4.2
"HMMcopy" # broken build "HMMcopy" # broken build
"homomorpheR" # broken build
"hopach" # broken build "hopach" # broken build
"hpcwld" # broken build "hpcwld" # broken build
"hpoPlot" # broken build "hpoPlot" # broken build
@ -1340,11 +1368,14 @@ let
"IsoGene" # depends on broken package affyio-1.37.0 "IsoGene" # depends on broken package affyio-1.37.0
"IsoGeneGUI" # depends on broken package affyio-1.37.0 "IsoGeneGUI" # depends on broken package affyio-1.37.0
"ITALICS" # depends on broken package oligo-1.33.0 "ITALICS" # depends on broken package oligo-1.33.0
"ITEMAN" # depends on broken package r-car-2.1-0
"iteRates" # broken build "iteRates" # broken build
"iterativeBMA" # broken build "iterativeBMA" # broken build
"iterpc" # broken build "iterpc" # broken build
"IUPS"
"IVAS" # depends on broken package nlopt-2.4.2 "IVAS" # depends on broken package nlopt-2.4.2
"ivpack" # depends on broken package nlopt-2.4.2 "ivpack" # depends on broken package nlopt-2.4.2
"jagsUI"
"JAGUAR" # depends on broken package nlopt-2.4.2 "JAGUAR" # depends on broken package nlopt-2.4.2
"jetset" "jetset"
"jmosaics" # broken build "jmosaics" # broken build
@ -1362,6 +1393,8 @@ let
"ktspair" # broken build "ktspair" # broken build
"kza" # broken build "kza" # broken build
"kzft" # broken build "kzft" # broken build
"LANDD" # depends on broken package r-GOSemSim-1.27.4
"LaplaceDeconv" # depends on broken package r-orthopolynom-1.0-5
"lapmix" # broken build "lapmix" # broken build
"lawn" # depends on broken package V8-0.6 "lawn" # depends on broken package V8-0.6
"ldamatch" # broken build "ldamatch" # broken build
@ -1373,9 +1406,12 @@ let
"lessR" # depends on broken package nlopt-2.4.2 "lessR" # depends on broken package nlopt-2.4.2
"lfe" # build is broken "lfe" # build is broken
"lgcp" # depends on broken package rpanel-1.1-3 "lgcp" # depends on broken package rpanel-1.1-3
"Libra" # broken build
"limmaGUI" # depends on broken package affyio-1.37.0 "limmaGUI" # depends on broken package affyio-1.37.0
"LinRegInteractive" # depends on broken package rpanel-1.1-3 "LinRegInteractive" # depends on broken package rpanel-1.1-3
"LiquidAssociation" # build is broken "LiquidAssociation" # build is broken
"lira"
"littler" # broken build
"lmdme" # build is broken "lmdme" # build is broken
"lme4" # depends on broken package nlopt-2.4.2 "lme4" # depends on broken package nlopt-2.4.2
"LMERConvenienceFunctions" # depends on broken package nlopt-2.4.2 "LMERConvenienceFunctions" # depends on broken package nlopt-2.4.2
@ -1383,6 +1419,7 @@ let
"LMGene" # depends on broken package affyio-1.37.0 "LMGene" # depends on broken package affyio-1.37.0
"lmSupport" # depends on broken package nlopt-2.4.2 "lmSupport" # depends on broken package nlopt-2.4.2
"LogisticDx" # depends on broken package nlopt-2.4.2 "LogisticDx" # depends on broken package nlopt-2.4.2
"LOGIT" # depends on broken package r-caret-6.0-58
"logitT" # depends on broken package affyio-1.37.0 "logitT" # depends on broken package affyio-1.37.0
"LOLA" # broken build "LOLA" # broken build
"longpower" # depends on broken package nlopt-2.4.2 "longpower" # depends on broken package nlopt-2.4.2
@ -1395,6 +1432,7 @@ let
"M3D" # depends on broken package Rsamtools-1.21.8 "M3D" # depends on broken package Rsamtools-1.21.8
"maanova" # broken build "maanova" # broken build
"macat" # broken build "macat" # broken build
"maGUI" # depends on broken package r-affy-1.47.1
"maigesPack" # broken build "maigesPack" # broken build
"MAIT" # depends on broken package nlopt-2.4.2 "MAIT" # depends on broken package nlopt-2.4.2
"makecdfenv" # depends on broken package affyio-1.37.0 "makecdfenv" # depends on broken package affyio-1.37.0
@ -1441,8 +1479,10 @@ let
"metagene" # depends on broken package Rsamtools-1.21.8 "metagene" # depends on broken package Rsamtools-1.21.8
"metagenomeSeq" # broken build "metagenomeSeq" # broken build
"MetaLandSim" # broken build "MetaLandSim" # broken build
"metamisc"
"metaMix" # build is broken "metaMix" # build is broken
"metaMS" # depends on broken package mzR-2.3.1 "metaMS" # depends on broken package mzR-2.3.1
"MetaPath" # depends on broken package r-Biobase-2.29.1
"metaplus" # depends on broken package nlopt-2.4.2 "metaplus" # depends on broken package nlopt-2.4.2
"metaSEM" # depends on broken package OpenMx-2.2.4 "metaSEM" # depends on broken package OpenMx-2.2.4
"metaSeq" # broken build "metaSeq" # broken build
@ -1489,6 +1529,7 @@ let
"mixlm" # depends on broken package nlopt-2.4.2 "mixlm" # depends on broken package nlopt-2.4.2
"MixMAP" # depends on broken package nlopt-2.4.2 "MixMAP" # depends on broken package nlopt-2.4.2
"MLInterfaces" # broken build "MLInterfaces" # broken build
"mlma" # depends on broken package r-lme4-1.1-10
"mlmRev" # depends on broken package nlopt-2.4.2 "mlmRev" # depends on broken package nlopt-2.4.2
"MLP" # depends on broken package affyio-1.37.0 "MLP" # depends on broken package affyio-1.37.0
"MLSeq" # depends on broken package nlopt-2.4.2 "MLSeq" # depends on broken package nlopt-2.4.2
@ -1500,10 +1541,13 @@ let
"mmnet" # broken build "mmnet" # broken build
"MmPalateMiRNA" # depends on broken package affyio-1.37.0 "MmPalateMiRNA" # depends on broken package affyio-1.37.0
"mogsa" # broken build "mogsa" # broken build
"molaR" # depends on broken package r-geomorph-2.1.7-1
"mongolite" # build is broken "mongolite" # build is broken
"monocle" # build is broken "monocle" # build is broken
"monogeneaGM" # broken build "monogeneaGM" # broken build
"MonoPhy" # depends on broken package r-phytools-0.5-00
"MoPS" # broken build "MoPS" # broken build
"morse"
"mosaic" # depends on broken package nlopt-2.4.2 "mosaic" # depends on broken package nlopt-2.4.2
"mosaics" # broken build "mosaics" # broken build
"motifbreakR" # depends on broken package r-BSgenome-1.37.5 "motifbreakR" # depends on broken package r-BSgenome-1.37.5
@ -1562,6 +1606,7 @@ let
"NGScopy" "NGScopy"
"nhanesA" # broken build "nhanesA" # broken build
"NHPoisson" # depends on broken package nlopt-2.4.2 "NHPoisson" # depends on broken package nlopt-2.4.2
"NIPTeR" # depends on broken package r-Rsamtools-1.21.18
"nloptr" # depends on broken package nlopt-2.4.2 "nloptr" # depends on broken package nlopt-2.4.2
"nlsem" # broken build "nlsem" # broken build
"nlts" # broken build "nlts" # broken build
@ -1587,6 +1632,7 @@ let
"opencpu" # broken build "opencpu" # broken build
"openCyto" # depends on broken package ncdfFlow-2.15.2 "openCyto" # depends on broken package ncdfFlow-2.15.2
"OpenMx" # build is broken "OpenMx" # build is broken
"openssl"
"OperaMate" # depends on broken package Category-2.35.1 "OperaMate" # depends on broken package Category-2.35.1
"oposSOM" # broken build "oposSOM" # broken build
"optBiomarker" # depends on broken package rpanel-1.1-3 "optBiomarker" # depends on broken package rpanel-1.1-3
@ -1639,6 +1685,7 @@ let
"pcalg" # broken build "pcalg" # broken build
"pcaMethods" # broken build "pcaMethods" # broken build
"PCGSE" # broken build "PCGSE" # broken build
"pcnetmeta"
"pcot2" # broken build "pcot2" # broken build
"PCpheno" # depends on broken package Category-2.35.1 "PCpheno" # depends on broken package Category-2.35.1
"PCS" # broken build "PCS" # broken build
@ -1666,6 +1713,7 @@ let
"phytools" # broken build "phytools" # broken build
"piano" # broken build "piano" # broken build
"PICS" # depends on broken package Rsamtools-1.21.8 "PICS" # depends on broken package Rsamtools-1.21.8
"piecewiseSEM" # depends on broken package r-lme4-1.1-10
"PING" # depends on broken package Rsamtools-1.21.8 "PING" # depends on broken package Rsamtools-1.21.8
"pkgDepTools" # broken build "pkgDepTools" # broken build
"plateCore" # depends on broken package ncdfFlow-2.15.2 "plateCore" # depends on broken package ncdfFlow-2.15.2
@ -1693,6 +1741,8 @@ let
"PREDA" # broken build "PREDA" # broken build
"predictionet" # broken build "predictionet" # broken build
"predictmeans" # depends on broken package nlopt-2.4.2 "predictmeans" # depends on broken package nlopt-2.4.2
"preprocomb" # depends on broken package r-caret-6.0-58
"prevalence"
"pRF" # broken build "pRF" # broken build
"prLogistic" # depends on broken package nlopt-2.4.2 "prLogistic" # depends on broken package nlopt-2.4.2
"proBAMr" # depends on broken package Rsamtools-1.21.8 "proBAMr" # depends on broken package Rsamtools-1.21.8
@ -1713,8 +1763,10 @@ let
"PSICQUIC" # broken build "PSICQUIC" # broken build
"ptw" # depends on broken nloptr-1.0.4 "ptw" # depends on broken nloptr-1.0.4
"puma" # depends on broken package affyio-1.37.0 "puma" # depends on broken package affyio-1.37.0
"PurBayes"
"purge" # depends on broken package r-lme4-1.1-9 "purge" # depends on broken package r-lme4-1.1-9
"pvac" # depends on broken package affyio-1.37.0 "pvac" # depends on broken package affyio-1.37.0
"PVAClone"
"pvca" # depends on broken package nlopt-2.4.2 "pvca" # depends on broken package nlopt-2.4.2
"Pviz" # depends on broken package Rsamtools-1.21.8 "Pviz" # depends on broken package Rsamtools-1.21.8
"PWMEnrich" # broken build "PWMEnrich" # broken build
@ -1739,6 +1791,7 @@ let
"QuasiSeq" # broken build "QuasiSeq" # broken build
"QuasR" # depends on broken package Rsamtools-1.21.8 "QuasR" # depends on broken package Rsamtools-1.21.8
"qusage" # broken build "qusage" # broken build
"R2jags"
"R2STATS" # depends on broken package nlopt-2.4.2 "R2STATS" # depends on broken package nlopt-2.4.2
"R3CPET" # depends on broken package Rsamtools-1.21.8 "R3CPET" # depends on broken package Rsamtools-1.21.8
"r3Cseq" # depends on broken package Rsamtools-1.21.8 "r3Cseq" # depends on broken package Rsamtools-1.21.8
@ -1769,6 +1822,7 @@ let
"rcellminer" # broken build "rcellminer" # broken build
"rCGH" # depends on broken package r-affy-1.47.1 "rCGH" # depends on broken package r-affy-1.47.1
"Rchemcpp" # depends on broken package ChemmineR-2.21.7 "Rchemcpp" # depends on broken package ChemmineR-2.21.7
"rchess" # depends on broken package r-V8-0.9
"RchyOptimyx" # broken build "RchyOptimyx" # broken build
"Rcmdr" # depends on broken package nlopt-2.4.2 "Rcmdr" # depends on broken package nlopt-2.4.2
"RcmdrMisc" # depends on broken package nlopt-2.4.2 "RcmdrMisc" # depends on broken package nlopt-2.4.2
@ -1781,6 +1835,7 @@ let
"RcmdrPlugin_EBM" # depends on broken package nlopt-2.4.2 "RcmdrPlugin_EBM" # depends on broken package nlopt-2.4.2
"RcmdrPlugin_EcoVirtual" # depends on broken package nlopt-2.4.2 "RcmdrPlugin_EcoVirtual" # depends on broken package nlopt-2.4.2
"RcmdrPlugin_epack" # depends on broken package nlopt-2.4.2 "RcmdrPlugin_epack" # depends on broken package nlopt-2.4.2
"RcmdrPlugin_Export" # depends on broken package r-Rcmdr-2.2-3
"RcmdrPlugin_EZR" # depends on broken package nlopt-2.4.2 "RcmdrPlugin_EZR" # depends on broken package nlopt-2.4.2
"RcmdrPlugin_FactoMineR" # depends on broken package nlopt-2.4.2 "RcmdrPlugin_FactoMineR" # depends on broken package nlopt-2.4.2
"RcmdrPlugin_HH" # depends on broken package nlopt-2.4.2 "RcmdrPlugin_HH" # depends on broken package nlopt-2.4.2
@ -1859,6 +1914,7 @@ let
"RIPSeeker" # depends on broken package Rsamtools-1.21.8 "RIPSeeker" # depends on broken package Rsamtools-1.21.8
"Risa" # depends on broken package affyio-1.37.0 "Risa" # depends on broken package affyio-1.37.0
"rjade" # depends on broken package V8-0.6 "rjade" # depends on broken package V8-0.6
"rjags"
"rJPSGCS" # build is broken "rJPSGCS" # build is broken
"rLindo" # build is broken "rLindo" # build is broken
"RLRsim" # depends on broken package r-lme4-1.1-9 "RLRsim" # depends on broken package r-lme4-1.1-9
@ -1878,6 +1934,7 @@ let
"RnaSeqSampleSize" # Build Is Broken "RnaSeqSampleSize" # Build Is Broken
"RnavGraph" # build is broken "RnavGraph" # build is broken
"RnBeads" # depends on broken package Rsamtools-1.21.8 "RnBeads" # depends on broken package Rsamtools-1.21.8
"rnetcarto" # broken build
"Rnits" # depends on broken package affyio-1.37.0 "Rnits" # depends on broken package affyio-1.37.0
"rNOMADS" # broken build "rNOMADS" # broken build
"roar" # depends on broken package Rsamtools-1.21.8 "roar" # depends on broken package Rsamtools-1.21.8
@ -1904,6 +1961,7 @@ let
"rqubic" # broken build "rqubic" # broken build
"rr" # depends on broken package nlopt-2.4.2 "rr" # depends on broken package nlopt-2.4.2
"rRDP" # broken build "rRDP" # broken build
"RRreg" # depends on broken package r-lme4-1.1-10
"Rsamtools" # Build Is Broken "Rsamtools" # Build Is Broken
"RSAP" # build is broken "RSAP" # build is broken
"rsbml" # build is broken "rsbml" # build is broken
@ -1911,6 +1969,7 @@ let
"RSDA" # depends on broken package nlopt-2.4.2 "RSDA" # depends on broken package nlopt-2.4.2
"RSeed" # broken build "RSeed" # broken build
"rSFFreader" # depends on broken package Rsamtools-1.21.8 "rSFFreader" # depends on broken package Rsamtools-1.21.8
"Rsomoclu"
"RStoolbox" # depends on broken package r-caret-6.0-52 "RStoolbox" # depends on broken package r-caret-6.0-52
"Rsubread" # Build Is Broken "Rsubread" # Build Is Broken
"RSVSim" # depends on broken package Rsamtools-1.21.8 "RSVSim" # depends on broken package Rsamtools-1.21.8
@ -1978,9 +2037,12 @@ let
"SeqVarTools" # depends on broken package Rsamtools-1.21.8 "SeqVarTools" # depends on broken package Rsamtools-1.21.8
"SGSeq" # depends on broken package Rsamtools-1.21.8 "SGSeq" # depends on broken package Rsamtools-1.21.8
"SharpeR" # broken build "SharpeR" # broken build
"sharx"
"shinyMethyl" # depends on broken package Rsamtools-1.21.8 "shinyMethyl" # depends on broken package Rsamtools-1.21.8
"shinyTANDEM" # depends on broken package rTANDEM-1.9.0 "shinyTANDEM" # depends on broken package rTANDEM-1.9.0
"ShortRead" # depends on broken package Rsamtools-1.21.8 "ShortRead" # depends on broken package Rsamtools-1.21.8
"Shrinkage" # depends on broken package r-multtest-2.25.2
"SIBER"
"SID" # broken build "SID" # broken build
"sigaR" # broken build "sigaR" # broken build
"SigCheck" # broken build "SigCheck" # broken build
@ -1992,9 +2054,11 @@ let
"SimBindProfiles" # depends on broken package affyio-1.37.0 "SimBindProfiles" # depends on broken package affyio-1.37.0
"SIM" # broken build "SIM" # broken build
"similaRpeak" # depends on broken package Rsamtools-1.21.8 "similaRpeak" # depends on broken package Rsamtools-1.21.8
"simmr"
"simpleaffy" # depends on broken package affyio-1.37.0 "simpleaffy" # depends on broken package affyio-1.37.0
"simPop" # depends on broken package r-VIM-4.4.1 "simPop" # depends on broken package r-VIM-4.4.1
"SimRAD" # depends on broken package Rsamtools-1.21.8 "SimRAD" # depends on broken package Rsamtools-1.21.8
"simr" # depends on broken package r-lme4-1.1-10
"SimReg" # broken build "SimReg" # broken build
"simulatorZ" # broken build "simulatorZ" # broken build
"sirt" # depends on broken package nlopt-2.4.2 "sirt" # depends on broken package nlopt-2.4.2
@ -2013,6 +2077,7 @@ let
"snpStatsWriter" # depends on broken package snpStats-1.19.0 "snpStatsWriter" # depends on broken package snpStats-1.19.0
"SNPtools" # depends on broken package Rsamtools-1.21.8 "SNPtools" # depends on broken package Rsamtools-1.21.8
"SOD" # depends on broken package cudatoolkit-5.5.22 "SOD" # depends on broken package cudatoolkit-5.5.22
"sodium" # broken build
"soGGi" # depends on broken package Rsamtools-1.21.8 "soGGi" # depends on broken package Rsamtools-1.21.8
"soilphysics" # depends on broken package rpanel-1.1-3 "soilphysics" # depends on broken package rpanel-1.1-3
"SomatiCA" # broken build "SomatiCA" # broken build
@ -2022,8 +2087,10 @@ let
"SpacePAC" # broken build "SpacePAC" # broken build
"spacom" # depends on broken package nlopt-2.4.2 "spacom" # depends on broken package nlopt-2.4.2
"spade" # broken build "spade" # broken build
"SparseLearner" # depends on broken package r-qgraph-1.3.1
"spdynmod" # broken build "spdynmod" # broken build
"specificity" # depends on broken package nlopt-2.4.2 "specificity" # depends on broken package nlopt-2.4.2
"specmine" # depends on broken package r-caret-6.0-58
"SpeCond" # broken build "SpeCond" # broken build
"SPEM" # broken build "SPEM" # broken build
"SPIA" # broken build "SPIA" # broken build
@ -2045,6 +2112,7 @@ let
"staRank" # depends on broken package Category-2.35.1 "staRank" # depends on broken package Category-2.35.1
"Starr" # depends on broken package affyio-1.37.0 "Starr" # depends on broken package affyio-1.37.0
"STATegRa" # depends on broken package affyio-1.37.0 "STATegRa" # depends on broken package affyio-1.37.0
"StatMethRank"
"Statomica" # broken build "Statomica" # broken build
"stcm" # depends on broken package nlopt-2.4.2 "stcm" # depends on broken package nlopt-2.4.2
"stepp" # depends on broken package nlopt-2.4.2 "stepp" # depends on broken package nlopt-2.4.2
@ -2084,8 +2152,10 @@ let
"TIN" # depends on broken package WGCNA-1.47 "TIN" # depends on broken package WGCNA-1.47
"TitanCNA" # depends on broken package Rsamtools-1.21.8 "TitanCNA" # depends on broken package Rsamtools-1.21.8
"TKF" # broken build "TKF" # broken build
"TLBC" # depends on broken package r-caret-6.0-58
"tmle" # broken build "tmle" # broken build
"tnam" # depends on broken package r-lme4-1.1-9 "tnam" # depends on broken package r-lme4-1.1-9
"tolBasis" # depends on broken package r-polynom-1.3-8
"ToPASeq" # depends on broken package Rsamtools-1.21.8 "ToPASeq" # depends on broken package Rsamtools-1.21.8
"topGO" # build is broken "topGO" # build is broken
"topologyGSA" # depends on broken package Rsamtools-1.21.8 "topologyGSA" # depends on broken package Rsamtools-1.21.8
@ -2144,6 +2214,7 @@ let
"wgsea" # depends on broken package snpStats-1.19.0 "wgsea" # depends on broken package snpStats-1.19.0
"WideLM" # depends on broken package cudatoolkit-5.5.22 "WideLM" # depends on broken package cudatoolkit-5.5.22
"wikipediatrend" # broken build "wikipediatrend" # broken build
"wordbankr" # depends on broken package r-RMySQL-0.10.7
"XBSeq" # broken build "XBSeq" # broken build
"xcms" # depends on broken package mzR-2.3.1 "xcms" # depends on broken package mzR-2.3.1
"XDE" # broken build "XDE" # broken build
@ -2152,8 +2223,11 @@ let
"xps" # build is broken "xps" # build is broken
"XVector" # broken build "XVector" # broken build
"yaqcaffy" # depends on broken package affyio-1.37.0 "yaqcaffy" # depends on broken package affyio-1.37.0
"ZeligChoice" # depends on broken package r-AER-1.2-4
"Zelig" # depends on broken package r-AER-1.2-4
"ZeligMultilevel" # depends on broken package nlopt-2.4.2 "ZeligMultilevel" # depends on broken package nlopt-2.4.2
"zetadiv" # depends on broken package nlopt-2.4.2 "zetadiv" # depends on broken package nlopt-2.4.2
"zoib"
]; ];
otherOverrides = old: new: { otherOverrides = old: new: {