Merge master into staging-next

pkgs/development/python-modules/ajpy/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "ajpy";
-  version = "0.0.4";
+  version = "0.0.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0a5f62b765f59ffc37e759d3f343de16cd782cc4e9e8be09c73b71dfbe383d9b";
+    sha256 = "173wm207zyi86m2ms7vscakdi4mmjqfxqsdx1gn0j9nn0gsf241h";
   };
 
   # ajpy doesn't have tests

pkgs/development/python-modules/astropy/default.nix

@@ -10,13 +10,13 @@
 
 buildPythonPackage rec {
   pname = "astropy";
-  version = "4.0";
+  version = "4.0.1.post1";
 
   disabled = !isPy3k; # according to setup.py
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "404200e0baa84de09ac563ad9ccab3817e9b9669d0025cee74a8752f4bc2771b";
+    sha256 = "1da4xj793ldck29aajyb514wpz330cml26f3gdp45jj531n4lc2w";
   };
 
   nativeBuildInputs = [ astropy-helpers ];

pkgs/development/python-modules/configargparse/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "ConfigArgParse";
-  version = "1.0";
+  version = "1.2.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0cvinm7bb03qfjpq2zhfacm0qs4ip4378nvya8x41p4wpi2q4dxz";
+    sha256 = "1p1pzpf5qpf80bfxsx1mbw9blyhhypjvhl3i60pbmhfmhvlpplgd";
   };
 
   # no tests in tarball

pkgs/development/python-modules/cvxopt/default.nix

@@ -18,13 +18,13 @@ assert (!blas.isILP64) && (!lapack.isILP64);
 
 buildPythonPackage rec {
   pname = "cvxopt";
-  version = "1.2.4";
+  version = "1.2.5";
 
   disabled = isPyPy; # hangs at [translation:info]
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1h9g79gxpgpy6xciqyypihw5q4ngp322lpkka1nkwk0ysybfsp7s";
+    sha256 = "0widrfxr0x0cyg72ibkv7fdzkvmf5mllchq1x4fs2a36plv8rv4l";
   };
 
   buildInputs = [ blas lapack ];

pkgs/development/python-modules/dash-core-components/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "dash_core_components";
-  version = "1.9.0";
+  version = "1.9.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1wr6989hq7q9vyh1qqdpbp8igk9rfca4phfpaim3nnk4swvm5m75";
+    sha256 = "0mi608d4q4clx5ikblqni5v67k051k894q0w5asa3jj1v0agawpa";
   };
 
   # No tests in archive

pkgs/development/python-modules/deprecated/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "Deprecated";
-  version = "1.2.8";
+  version = "1.2.9";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "029mr75wgah0z1ilsf3vf3dmjn65y4fy1jgq5qny2qsb9hvwbblw";
+    sha256 = "1k7c5kkh8jxxqdm0cbcvmhn3mwj0rcjwapwbzmm5r04n78lpvwqc";
   };
 
   propagatedBuildInputs = [ wrapt ];

pkgs/development/python-modules/dparse/default.nix

@@ -0,0 +1,23 @@
+{ lib, buildPythonPackage, fetchPypi, isPy27, pytest, toml, pyyaml }:
+
+buildPythonPackage rec {
+  pname = "dparse";
+  version = "0.5.1";
+  disabled = isPy27;
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "a1b5f169102e1c894f9a7d5ccf6f9402a836a5d24be80a986c7ce9eaed78f367";
+  };
+
+  propagatedBuildInputs = [ toml pyyaml ];
+
+  checkInputs = [ pytest ];
+
+  meta = with lib; {
+    description = "A parser for Python dependency files";
+    homepage = "https://github.com/pyupio/safety";
+    license = licenses.mit;
+    maintainers = with maintainers; [ thomasdesr ];
+  };
+}

pkgs/development/python-modules/elementpath/default.nix

@@ -1,7 +1,7 @@
 { lib, buildPythonPackage, fetchFromGitHub, isPy27 }:
 
 buildPythonPackage rec {
-  version = "1.4.3";
+  version = "1.4.4";
   pname = "elementpath";
   disabled = isPy27; # uses incompatible class syntax
 
@@ -9,7 +9,7 @@ buildPythonPackage rec {
     owner = "sissaschool";
     repo = "elementpath";
     rev = "v${version}";
-    sha256 = "18gqqdsrdlgwn93xnxy6ifxrk7ppaimijinflphxia2qcm8czkgf";
+    sha256 = "1z7403ykfdb2zy6g4qcbjm87ibpi0k59dgmz1px7z7wy5p2vknxw";
   };
 
   # avoid circular dependency with xmlschema which directly depends on this

pkgs/development/python-modules/feedgenerator/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "feedgenerator";
-  version = "1.9";
+  version = "1.9.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "01mirwkm7xfx539hmvj7g9da1j51gw5lsx74dr0glizskjm5vq2s";
+    sha256 = "0m6fjnrx3sd0bm6pnbhxxx5ywlwqh8bx0lka386kj28mg3fmm2m2";
   };
 
   buildInputs = [ glibcLocales ];

pkgs/development/python-modules/gensim/default.nix

@@ -11,12 +11,12 @@
 
 buildPythonPackage rec {
   pname = "gensim";
-  version = "3.8.2";
+  version = "3.8.3";
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1x9gvz954h10wgq02wybi21llwwjj9r1gal2qr82q7g1h9g0dqs6";
+    sha256 = "0rx37vnjspjl45v7bj123xwsjfgbwv91v8zpqpli8lgpf42xnskq";
   };
 
   propagatedBuildInputs = [ smart_open numpy six scipy ];

pkgs/development/python-modules/goocalendar/default.nix

@@ -14,13 +14,13 @@ with stdenv.lib;
 
 buildPythonPackage rec {
   pname = "GooCalendar";
-  version = "0.7.0";
+  version = "0.7.1";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "14m05pi1vwl7i8iv1wvc0r3450dlivsh85f4cyny08l869cr9lf1";
+    sha256 = "1ccvw1w7xinl574h16hqs6dh3fkpm5n1jrqwjqz3ignxvli5sr38";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/grequests/default.nix

@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "grequests";
-  version = "0.4.0";
+  version = "0.6.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8aeccc15e60ec65c7e67ee32e9c596ab2196979815497f85cf863465a1626490";
+    sha256 = "0rpnim3ppxjdsaa869h1jdimcyc66mamcs593rd7brk8cq68kv3x";
   };
 
   # No tests in archive

pkgs/development/python-modules/guessit/default.nix

@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "guessit";
-  version = "3.1.0";
+  version = "3.1.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2dcd3f2acaf6c1a864f903f084ddd6a6b753f3107ae864355d7c8c1e9cb205b2";
+    sha256 = "1c530pb0h34z0ziym256qps21b8mh533ia1lcnx9wqwx9rnqriki";
   };
 
   # Tests require more packages.

pkgs/development/python-modules/hdbscan/default.nix

@@ -12,11 +12,11 @@
 
 buildPythonPackage rec {
   pname = "hdbscan";
-  version = "0.8.25";
+  version = "0.8.26";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "17mi4nlifaygfw3n5ark5mfzx71pjxz3h6l455sh0i5mzh6czk4j";
+    sha256 = "0zlj2y42f0hrklviv21j9m895259ad8273dxgh7b44702781r9l1";
   };
 
   checkInputs = [ nose ];

pkgs/development/python-modules/hg-evolve/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "hg-evolve";
-  version = "9.3.0";
+  version = "9.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1jqlckibf7wwrg7syx6mzqz6zsipmsl474rfpmin6j6axh4cdpn7";
+    sha256 = "0d3gd8k0p6n2flcf7kny1zjvrbbrwbbq4lq82ah6gvnbvllxm4hj";
   };
 
   doCheck = false;

pkgs/development/python-modules/hstspreload/default.nix

@@ -6,14 +6,14 @@
 
 buildPythonPackage rec {
   pname = "hstspreload";
-  version = "2020.3.31";
+  version = "2020.5.5";
   disabled = isPy27;
 
   src = fetchFromGitHub {
     owner = "sethmlarson";
     repo = pname;
     rev = version;
-    sha256 = "12hncxzawvdsrssl350xxn1byfm1firgd3ziqfll4xhhw403jaa9";
+    sha256 = "0n3wp2ihjaxlq002rv141766cx4wgk0amg1cb6v30zp0m4054w7d";
   };
 
   # tests require network connection

pkgs/development/python-modules/hvac/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "hvac";
-  version = "0.10.0";
+  version = "0.10.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0s0705lk3i1srsjxqhqv9sc2m54fj8lbflxz9gyxf4igxaa6vj1f";
+    sha256 = "1fcd2psvkfsqy45iygm59rzhb7qkbgv3c1dk3x3jvhy6a1ls4kkq";
   };
 
   propagatedBuildInputs = [ requests six ];

pkgs/development/python-modules/icalendar/default.nix

@@ -7,12 +7,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "4.0.5";
+  version = "4.0.6";
   pname = "icalendar";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "14ynjj65kfmlcvpb7k097w789wvxncd3cr3xz5m1jz9yl9v6vv5q";
+    sha256 = "17wpvngxv9q333ng3hm4k1qhiafmzipr7l2liwny7ar24qiyfvvy";
   };
 
   buildInputs = [ setuptools ];

pkgs/development/python-modules/identify/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "identify";
-  version = "1.4.13";
+  version = "1.4.15";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "12adarxndb9f5kgbfch9644h86jhbf6vc1d5c5iiqnjqws9n495b";
+    sha256 = "1w6vy3nk28xhnamnmh7ddawprmb1ri2yw5s9lphmpq2hpfbqvh93";
   };
 
   # Tests not included in PyPI tarball

pkgs/development/python-modules/immutables/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "immutables";
-  version = "0.11";
+  version = "0.12";
   disabled = pythonOlder "3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d6850578a0dc6530ac19113cfe4ddc13903df635212d498f176fe601a8a5a4a3";
+    sha256 = "12i8r5z0y6ya850fwl2r4hig5hyli8skvjmgylapxa4zbr13fqmc";
   };
 
   meta = {

pkgs/development/python-modules/internetarchive/default.nix

@@ -1,22 +1,37 @@
-{ buildPythonPackage, fetchFromGitHub, pytest, six, clint, pyyaml, docopt
-, requests, jsonpatch, args, schema, responses, backports_csv, isPy3k
-, lib, glibcLocales, setuptools }:
+{ buildPythonPackage
+, fetchFromGitHub
+, pytest
+, six
+, tqdm
+, pyyaml
+, docopt
+, requests
+, jsonpatch
+, args
+, schema
+, responses
+, backports_csv
+, isPy3k
+, lib
+, glibcLocales
+, setuptools
+}:
 
 buildPythonPackage rec {
   pname = "internetarchive";
-  version = "1.9.0";
+  version = "1.9.3";
 
   # Can't use pypi, data files for tests missing
   src = fetchFromGitHub {
     owner = "jjjake";
     repo = "internetarchive";
     rev = "v${version}";
-    sha256 = "1h344c04ipzld4s7xk8d84f80samjjlgzvv3y8zsv0n1c895gymb";
+    sha256 = "19av6cpps2qldfl3wb9mcirs1a48a4466m1v9k9yhdznqi4zb0ji";
   };
 
   propagatedBuildInputs = [
     six
-    clint
+    tqdm
     pyyaml
     docopt
     requests
@@ -24,8 +39,7 @@ buildPythonPackage rec {
     args
     schema
     setuptools
-    backports_csv
-  ];
+  ] ++ lib.optionals (!isPy3k) [ backports_csv ];
 
   checkInputs = [ pytest responses glibcLocales ];
 
@@ -37,8 +51,9 @@ buildPythonPackage rec {
   '';
 
   meta = with lib; {
-    description = "A python wrapper for the various Internet Archive APIs";
+    description = "A Python and Command-Line Interface to Archive.org";
     homepage = "https://github.com/jjjake/internetarchive";
     license = licenses.agpl3;
+    maintainers = [ maintainers.marsam ];
   };
 }

pkgs/development/python-modules/ipydatawidgets/default.nix

@@ -0,0 +1,42 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, isPy27
+, pytest
+, pytestcov
+, nbval
+, ipywidgets
+, numpy
+, six
+, traittypes
+}:
+
+buildPythonPackage rec {
+  pname = "ipydatawidgets";
+  version = "4.0.1";
+
+  disabled = isPy27;
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1h7cppy959q6x5rvkdjhzxhqh57s37i2xsish5rfavcqbp2xgk4g";
+  };
+
+  propagatedBuildInputs = [
+    ipywidgets
+    numpy
+    six
+    traittypes
+  ];
+
+  checkInputs = [ pytest pytestcov nbval ];
+
+  checkPhase = "pytest ipydatawidgets/tests";
+
+  meta = {
+    description = "Widgets to help facilitate reuse of large datasets across different widgets";
+    homepage = "https://github.com/vidartf/ipydatawidgets";
+    license = lib.licenses.bsd3;
+    maintainers = with lib.maintainers; [ bcdarwin ];
+  };
+}

pkgs/development/python-modules/ipykernel/default.nix

@@ -15,11 +15,11 @@
 
 buildPythonPackage rec {
   pname = "ipykernel";
-  version = "5.1.4";
+  version = "5.2.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "7f1f01df22f1229c8879501057877ccaf92a3b01c1d00db708aad5003e5f9238";
+    sha256 = "1a3hr7wx3ywwskr99hgp120dw9ab1vmcaxdixlsbd9bg6ly3fdr9";
   };
 
   propagatedBuildInputs = [ ipython jupyter_client traitlets tornado ];

pkgs/development/python-modules/javaproperties/default.nix

@@ -5,14 +5,14 @@
 }:
 
 buildPythonPackage rec {
-  version = "0.5.2";
+  version = "0.7.0";
   pname = "javaproperties";
 
   src = fetchFromGitHub {
     owner = "jwodder";
     repo = pname;
     rev = "v${version}";
-    sha256 = "14hrp94cjj44yldf3k71wbq88cmlf01dfadi53gcirnsa56ddz5d";
+    sha256 = "14dlzwr4gxlbgjy012i4pqs2rn2rmp21w8n1k1wwjkf26mcvrq5s";
   };
 
   propagatedBuildInputs = [ six ];

pkgs/development/python-modules/jc/default.nix

@@ -1,23 +1,23 @@
 { stdenv
 , buildPythonPackage
-, fetchPypi,
-  ruamel_yaml
-, ifconfig-parser
+, fetchPypi
+, ruamel_yaml
 , xmltodict
+, pygments
 , isPy27
 }:
 
 buildPythonPackage rec {
   pname = "jc";
-  version = "1.9.3";
+  version = "1.10.7";
   disabled = isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1hg6h3ag4pbilpmqylnj7dflz7avk3w8ngmk6psfqrizizwx0hnj";
+    sha256 = "198vsnh6j0nv9d7msnvw6qr1bzf0nffjsz7clm11bs7fh3ri3qxp";
   };
 
-  propagatedBuildInputs = [ ruamel_yaml ifconfig-parser xmltodict ];
+  propagatedBuildInputs = [ ruamel_yaml xmltodict pygments ];
 
   meta = with stdenv.lib; {
     description = "This tool serializes the output of popular command line tools and filetypes to structured JSON output.";

pkgs/development/python-modules/jsonrpclib-pelix/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "jsonrpclib-pelix";
-  version = "0.4.0";
+  version = "0.4.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1pimyq95w99ik5av96j0n9i6n12mr9kk0y28jnrq0555d7hmii8r";
+    sha256 = "006yvxw6xv6qzcqpxm8jcf21gmdn0z4vp8njdbvk023mmq05k3h4";
   };
 
   doCheck = false; # test_suite="tests" in setup.py but no tests in pypi.

pkgs/development/python-modules/jupyter_client/5.nix

@@ -0,0 +1,39 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, traitlets
+, jupyter_core
+, pyzmq
+, dateutil
+, isPyPy
+, py
+, tornado
+}:
+
+buildPythonPackage rec {
+  pname = "jupyter_client";
+  version = "5.3.4";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "60e6faec1031d63df57f1cc671ed673dced0ed420f4377ea33db37b1c188b910";
+  };
+
+  propagatedBuildInputs = [
+    traitlets
+    jupyter_core
+    pyzmq
+    dateutil
+    tornado
+  ] ++ lib.optional isPyPy py;
+
+  # Circular dependency with ipykernel
+  doCheck = false;
+
+  meta = {
+    description = "Jupyter protocol implementation and client libraries";
+    homepage = "https://jupyter.org/";
+    license = lib.licenses.bsd3;
+    maintainers = with lib.maintainers; [ fridh ];
+  };
+}

pkgs/development/python-modules/nbformat/2.nix

@@ -12,11 +12,11 @@
 
 buildPythonPackage rec {
   pname = "nbformat";
-  version = "5.0.4";
+  version = "4.4.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "562de41fc7f4f481b79ab5d683279bf3a168858268d4387b489b7b02be0b324a";
+    sha256 = "f7494ef0df60766b7cabe0a3651556345a963b74dbc16bc7c18479041170d402";
   };
 
   LC_ALL="en_US.utf8";

pkgs/development/python-modules/notebook/2.nix

@@ -25,11 +25,11 @@
 
 buildPythonPackage rec {
   pname = "notebook";
-  version = "6.0.3";
+  version = "5.7.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "47a9092975c9e7965ada00b9a20f0cf637d001db60d241d479f53c0be117ad48";
+    sha256 = "573e0ae650c5d76b18b6e564ba6d21bf321d00847de1d215b418acb64f056eb8";
   };
 
   LC_ALL = "en_US.utf8";

pkgs/development/python-modules/pycontracts/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "PyContracts";
-  version = "1.8.12";
+  version = "1.8.14";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e76adbd832deec28b2045a6094c5bb779a0b2cb1105a23b3efafe723e2c9937a";
+    sha256 = "03q5m595ysjrc9h57m7prrca6b9l4yrzvdijnzxnhd61p7jzbh49";
   };
 
   buildInputs = [ nose ];

pkgs/development/python-modules/qtconsole/default.nix

@@ -10,6 +10,7 @@
 , pygments
 , ipykernel
 , pyqt5
+, qtpy
 }:
 
 buildPythonPackage rec {
@@ -22,7 +23,7 @@ buildPythonPackage rec {
   };
 
   checkInputs = [ nose ] ++ lib.optionals isPy27 [mock];
-  propagatedBuildInputs = [traitlets jupyter_core jupyter_client pygments ipykernel pyqt5];
+  propagatedBuildInputs = [traitlets jupyter_core jupyter_client pygments ipykernel pyqt5 qtpy];
 
   # : cannot connect to X server
   doCheck = false;

pkgs/development/python-modules/safety/default.nix

@@ -0,0 +1,33 @@
+{ lib, buildPythonPackage, fetchPypi, requests, dparse, click, setuptools, pytestCheckHook }:
+
+buildPythonPackage rec {
+  pname = "safety";
+  version = "1.9.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "23bf20690d4400edc795836b0c983c2b4cbbb922233108ff925b7dd7750f00c9";
+  };
+
+  propagatedBuildInputs = [ requests dparse click setuptools ];
+
+  # Disable tests depending on online services
+  checkInputs = [ pytestCheckHook ];
+  dontUseSetuptoolsCheck = true;
+  disabledTests = [
+    "test_check_live"
+    "test_check_live_cached"
+  ];
+
+  preCheck = ''
+    export HOME=$(mktemp -d)
+  '';
+
+  meta = with lib; {
+    description =
+      "Safety checks your installed dependencies for known security vulnerabilities";
+    homepage = "https://github.com/pyupio/safety";
+    license = licenses.mit;
+    maintainers = with maintainers; [ thomasdesr ];
+  };
+}

pkgs/development/python-modules/traittypes/default.nix

@@ -0,0 +1,47 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, fetchpatch
+, isPy27
+, pytest
+, nose
+, numpy
+, scipy
+, pandas
+, xarray
+, traitlets
+}:
+
+buildPythonPackage rec {
+  pname = "traittypes";
+  version = "unstable-2019-06-23";
+
+  disabled = isPy27;
+
+  src = fetchFromGitHub {
+    owner = "jupyter-widgets";
+    repo = pname;
+    rev = "0a030b928991dec732c17a7a1cb13acbcd7650a2";
+    sha256 = "0rlm5krmq6n8yi47dgdsjyrkz3m079pndpbzkz2gx98pb3jd9pjs";
+  };
+
+  patches = [
+    (fetchpatch {
+       name = "fix-intarray-test.patch";
+       url = "https://github.com/minrk/traittypes/commit/a02441e5b259e5858453a853207260c9bd4efbb5.patch";
+       sha256 = "120dsvr5nksizw75z1ah3h38mi399fxbvz5anakica557jahi0aw";
+    })
+  ];
+
+  propagatedBuildInputs = [ traitlets ];
+
+  checkInputs = [ numpy pandas xarray nose pytest ];
+
+  meta = with lib; {
+    description = "Trait types for NumPy, SciPy, XArray, and Pandas";
+    homepage = "https://github.com/jupyter-widgets/traittypes";
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ bcdarwin ];
+  };
+
+}