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Merge pull request #10710 from datakurre/datakurre-irkernel

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r-modules: init IRkernel packages
This commit is contained in:
Peter Simons 2015-10-30 14:21:29 +01:00
commit c9e3a8facc
3 changed files with 20 additions and 4 deletions
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9
pkgs/development/r-modules/default.nix
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@ -33,7 +33,7 @@ let
meta.broken = broken; meta.broken = broken;
}); });
# Templates for generating Bioconductor and CRAN packages # Templates for generating Bioconductor, CRAN and IRkernel packages
# from the name, version, sha256, and optional per-package arguments above # from the name, version, sha256, and optional per-package arguments above
# #
deriveBioc = mkDerive { deriveBioc = mkDerive {
@ -47,6 +47,10 @@ let
"mirror://cran/src/contrib/00Archive/${name}/${name}_${version}.tar.gz" "mirror://cran/src/contrib/00Archive/${name}/${name}_${version}.tar.gz"
]; ];
}; };
deriveIRkernel = mkDerive {
mkHomepage = name: "http://irkernel.github.io/";
mkUrls = {name, version}: [ "http://irkernel.github.io/src/contrib/${name}_${version}.tar.gz" ];
};
# Overrides package definitions with nativeBuildInputs. # Overrides package definitions with nativeBuildInputs.
# For example, # For example,
@ -206,7 +210,8 @@ let
# packages in `_self` may depends on overridden packages. # packages in `_self` may depends on overridden packages.
self = (defaultOverrides _self self) // overrides; self = (defaultOverrides _self self) // overrides;
_self = import ./bioc-packages.nix { inherit self; derive = deriveBioc; } // _self = import ./bioc-packages.nix { inherit self; derive = deriveBioc; } //
import ./cran-packages.nix { inherit self; derive = deriveCran; }; import ./cran-packages.nix { inherit self; derive = deriveCran; } //
import ./irkernel-packages.nix { inherit self; derive = deriveIRkernel; };
# tweaks for the individual packages and "in self" follow # tweaks for the individual packages and "in self" follow

4
pkgs/development/r-modules/generate-r-packages.R
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@ -1,17 +1,17 @@
#!/usr/bin/env Rscript #!/usr/bin/env Rscript
library(data.table) library(data.table)
library(parallel) library(parallel)
cl <- makeCluster(10) cl <- makeCluster(10)
mirrorType <- commandArgs(trailingOnly=TRUE)[1] mirrorType <- commandArgs(trailingOnly=TRUE)[1]
stopifnot(mirrorType %in% c("bioc","cran")) stopifnot(mirrorType %in% c("bioc","cran", "irkernel"))
packagesFile <- paste(mirrorType, 'packages.nix', sep='-') packagesFile <- paste(mirrorType, 'packages.nix', sep='-')
readFormatted <- as.data.table(read.table(skip=6, sep='"', text=head(readLines(packagesFile), -1))) readFormatted <- as.data.table(read.table(skip=6, sep='"', text=head(readLines(packagesFile), -1)))
mirrorUrls <- list( bioc="http://bioconductor.statistik.tu-dortmund.de/packages/3.2/bioc/src/contrib/" mirrorUrls <- list( bioc="http://bioconductor.statistik.tu-dortmund.de/packages/3.2/bioc/src/contrib/"
, cran="http://cran.r-project.org/src/contrib/" , cran="http://cran.r-project.org/src/contrib/"
, irkernel="http://irkernel.github.io/src/contrib/"
) )
mirrorUrl <- mirrorUrls[mirrorType][[1]] mirrorUrl <- mirrorUrls[mirrorType][[1]]
knownPackages <- lapply(mirrorUrls, function(url) as.data.table(available.packages(url, filters=c("R_version", "OS_type", "duplicates")))) knownPackages <- lapply(mirrorUrls, function(url) as.data.table(available.packages(url, filters=c("R_version", "OS_type", "duplicates"))))

11
pkgs/development/r-modules/irkernel-packages.nix Normal file
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@ -0,0 +1,11 @@
# This file is generated from generate-r-packages.R. DO NOT EDIT.
# Execute the following command to update the file.
#
# Rscript generate-r-packages.R irkernel >new && mv new irkernel-packages.nix
{ self, derive }: with self; {
IRdisplay = derive { name="IRdisplay"; version="0.3"; sha256="0aa7v3x6s9jd5kzwfh4659gm3dqkmadbk40a0jdpm856mf9r5w6s"; depends=[base64enc repr]; };
IRkernel = derive { name="IRkernel"; version="0.5"; sha256="0v9f01j1ysadq2f8d4mpbimrspj7051cncl0rd1n97rb8wlb9rrf"; depends=[digest evaluate IRdisplay jsonlite repr rzmq uuid]; };
repr = derive { name="repr"; version="0.4"; sha256="1mhvslkxr5nkxiijapzm29jpmjnhhjs1v9s84xvhqpxlcav8dsn6"; depends=[]; };
rzmq = derive { name="rzmq"; version="0.7.7"; sha256="0cds9wsbfb7lhgfjjfisv1i3905ny7x3i2wbb1rcih03ba4a1ij3"; depends=[]; };
}