diff --git a/.editorconfig b/.editorconfig index 66a23a20577..d8a320e495c 100644 --- a/.editorconfig +++ b/.editorconfig @@ -65,9 +65,7 @@ trim_trailing_whitespace = unset [gemset.nix] insert_final_newline = unset -[node-{composition,packages}.nix] -insert_final_newline = unset -[node-packages-generated.nix] +[node-{composition,packages,packages-generated}.nix] insert_final_newline = unset [nixos/modules/services/networking/ircd-hybrid/*.{conf,in}] @@ -76,9 +74,6 @@ trim_trailing_whitespace = unset [nixos/tests/systemd-networkd-vrf.nix] trim_trailing_whitespace = unset -[pkgs/applications/editors/emacs-modes/recipes-archive-melpa.json] -indent_size = unset - [pkgs/build-support/dotnetenv/Wrapper/**] end_of_line = unset insert_final_newline = unset @@ -91,12 +86,8 @@ trim_trailing_whitespace = unset end_of_line = unset insert_final_newline = unset -[pkgs/development/lisp-modules/quicklisp-to-nix.nix] -indent_size = unset - [pkgs/development/haskell-modules/hackage-packages.nix] indent_style = unset -indent_size = unset trim_trailing_whitespace = unset [pkgs/development/mobile/androidenv/generated/{addons,packages}.nix] @@ -106,7 +97,6 @@ trim_trailing_whitespace = unset insert_final_newline = unset [pkgs/servers/dict/wordnet_structures.py] -indent_size = unset trim_trailing_whitespace = unset [pkgs/tools/misc/timidity/timidity.cfg] @@ -118,6 +108,3 @@ trim_trailing_whitespace = unset [pkgs/top-level/emscripten-packages.nix] trim_trailing_whitespace = unset - -[pkgs/top-level/perl-packages.nix] -indent_size = unset diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS index 556dcd770ca..7d6d7205a14 100644 --- a/.github/CODEOWNERS +++ b/.github/CODEOWNERS @@ -96,8 +96,8 @@ /pkgs/development/ruby-modules @alyssais # Rust -/pkgs/development/compilers/rust @Mic92 @LnL7 -/pkgs/build-support/rust @andir +/pkgs/development/compilers/rust @Mic92 @LnL7 @zowoq +/pkgs/build-support/rust @andir @zowoq # Darwin-related /pkgs/stdenv/darwin @NixOS/darwin-maintainers @@ -192,6 +192,7 @@ /nixos/tests/php @NixOS/php /pkgs/build-support/build-pecl.nix @NixOS/php /pkgs/development/interpreters/php @NixOS/php +/pkgs/development/php-packages @NixOS/php /pkgs/top-level/php-packages.nix @NixOS/php # Podman, CRI-O modules and related diff --git a/.github/CONTRIBUTING.md b/.github/CONTRIBUTING.md index fd2a6073df6..8ec9d535332 100644 --- a/.github/CONTRIBUTING.md +++ b/.github/CONTRIBUTING.md @@ -53,10 +53,10 @@ For package version upgrades and such a one-line commit message is usually suffi Follow these steps to backport a change into a release branch in compliance with the [commit policy](https://nixos.org/nixpkgs/manual/#submitting-changes-stable-release-branches). 1. Take note of the commits in which the change was introduced into `master` branch. -2. Check out the target _release branch_, e.g. `release-20.03`. Do not use a _channel branch_ like `nixos-20.03` or `nixpkgs-20.03`. +2. Check out the target _release branch_, e.g. `release-20.09`. Do not use a _channel branch_ like `nixos-20.09` or `nixpkgs-20.09`. 3. Create a branch for your change, e.g. `git checkout -b backport`. 4. When the reason to backport is not obvious from the original commit message, use `git cherry-pick -xe ` and add a reason. Otherwise use `git cherry-pick -x `. That's fine for minor version updates that only include security and bug fixes, commits that fixes an otherwise broken package or similar. Please also ensure the commits exists on the master branch; in the case of squashed or rebased merges, the commit hash will change and the new commits can be found in the merge message at the bottom of the master pull request. -5. Push to GitHub and open a backport pull request. Make sure to select the release branch (e.g. `release-20.03`) as the target branch of the pull request, and link to the pull request in which the original change was comitted to `master`. The pull request title should be the commit title with the release version as prefix, e.g. `[20.03]`. +5. Push to GitHub and open a backport pull request. Make sure to select the release branch (e.g. `release-20.09`) as the target branch of the pull request, and link to the pull request in which the original change was comitted to `master`. The pull request title should be the commit title with the release version as prefix, e.g. `[20.09]`. ## Reviewing contributions diff --git a/.github/STALE-BOT.md b/.github/STALE-BOT.md new file mode 100644 index 00000000000..3b1599baebf --- /dev/null +++ b/.github/STALE-BOT.md @@ -0,0 +1,34 @@ +# Stale bot information + +- Thanks for your contribution! +- To remove the stale label, just leave a new comment. +- _How to find the right people to ping?_ → [`git blame`](https://git-scm.com/docs/git-blame) to the rescue! (or GitHub's history and blame buttons.) +- You can always ask for help on [our Discourse Forum](https://discourse.nixos.org/) or on the [#nixos IRC channel](https://webchat.freenode.net/#nixos). + +## Suggestions for PRs + +1. If it is unfinished but you plan to finish it, please mark it as a draft. +2. If you don't expect to work on it any time soon, closing it with a short comment may encourage someone else to pick up your work. +3. To get things rolling again, rebase the PR against the target branch and address valid comments. +4. If you need a review to move forward, ask in [the Discourse thread for PRs that need help](https://discourse.nixos.org/t/prs-in-distress/3604). +5. If all you need is a merge, check the git history to find and [request reviews](https://docs.github.com/en/github/collaborating-with-issues-and-pull-requests/requesting-a-pull-request-review) from people who usually merge related contributions. + +## Suggestions for issues + +1. If it is resolved (either for you personally, or in general), please consider closing it. +2. If this might still be an issue, but you are not interested in promoting its resolution, please consider closing it while encouraging others to take over and reopen an issue if they care enough. +3. If you still have interest in resolving it, try to ping somebody who you believe might have an interest in the topic. Consider discussing the problem in [our Discourse Forum](https://discourse.nixos.org/). +4. As with all open source projects, your best option is to submit a Pull Request that addresses this issue. We :heart: this attitude! + +**Memorandum on closing issues** + +Don't be afraid to close an issue that holds valuable information. Closed issues stay in the system for people to search, read, cross-reference, or even reopen--nothing is lost! Closing obsolete issues is an important way to help maintainers focus their time and effort. + +## Useful GitHub search queries + +- [Open PRs with any stale-bot interaction](https://github.com/NixOS/nixpkgs/pulls?q=is%3Apr+is%3Aopen+commenter%3Aapp%2Fstale+) +- [Open PRs with any stale-bot interaction and `2.status: stale`](https://github.com/NixOS/nixpkgs/pulls?q=is%3Apr+is%3Aopen+commenter%3Aapp%2Fstale+label%3A%222.status%3A+stale%22) +- [Open PRs with any stale-bot interaction and NOT `2.status: stale`](https://github.com/NixOS/nixpkgs/pulls?q=is%3Apr+is%3Aopen+commenter%3Aapp%2Fstale+-label%3A%222.status%3A+stale%22+) +- [Open Issues with any stale-bot interaction](https://github.com/NixOS/nixpkgs/issues?q=is%3Aissue+is%3Aopen+commenter%3Aapp%2Fstale+) +- [Open Issues with any stale-bot interaction and `2.status: stale`](https://github.com/NixOS/nixpkgs/issues?q=is%3Aissue+is%3Aopen+commenter%3Aapp%2Fstale+label%3A%222.status%3A+stale%22+) +- [Open Issues with any stale-bot interaction and NOT `2.status: stale`](https://github.com/NixOS/nixpkgs/issues?q=is%3Aissue+is%3Aopen+commenter%3Aapp%2Fstale+-label%3A%222.status%3A+stale%22+) diff --git a/.github/stale.yml b/.github/stale.yml index 606d5637cc5..b5e6ec93baf 100644 --- a/.github/stale.yml +++ b/.github/stale.yml @@ -1,41 +1,10 @@ # Configuration for probot-stale - https://github.com/probot/stale -# Number of days of inactivity before an issue becomes stale daysUntilStale: 180 -# Number of days of inactivity before a stale issue is closed daysUntilClose: false -# Issues with these labels will never be considered stale exemptLabels: - "1.severity: security" -# Label to use when marking an issue as stale + - "2.status: never-stale" staleLabel: "2.status: stale" -# Comment to post when marking an issue as stale. Set to `false` to disable -pulls: - markComment: | - Hello, I'm a bot and I thank you in the name of the community for your contributions. - - Nixpkgs is a busy repository, and unfortunately sometimes PRs get left behind for too long. Nevertheless, we'd like to help committers reach the PRs that are still important. This PR has had no activity for 180 days, and so I marked it as stale, but you can rest assured it will never be closed by a non-human. - - If this is still important to you and you'd like to remove the stale label, we ask that you leave a comment. Your comment can be as simple as "still important to me". But there's a bit more you can do: - - If you received an approval by an unprivileged maintainer and you are just waiting for a merge, you can @ mention someone with merge permissions and ask them to help. You might be able to find someone relevant by using [Git blame](https://git-scm.com/docs/git-blame) on the relevant files, or via [GitHub's web interface](https://docs.github.com/en/github/managing-files-in-a-repository/tracking-changes-in-a-file). You can see if someone's a member of the [nixpkgs-committers](https://github.com/orgs/NixOS/teams/nixpkgs-committers) team, by hovering with the mouse over their username on the web interface, or by searching them directly on [the list](https://github.com/orgs/NixOS/teams/nixpkgs-committers). - - If your PR wasn't reviewed at all, it might help to find someone who's perhaps a user of the package or module you are changing, or alternatively, ask once more for a review by the maintainer of the package/module this is about. If you don't know any, you can use [Git blame](https://git-scm.com/docs/git-blame) on the relevant files, or [GitHub's web interface](https://docs.github.com/en/github/managing-files-in-a-repository/tracking-changes-in-a-file) to find someone who touched the relevant files in the past. - - If your PR has had reviews and nevertheless got stale, make sure you've responded to all of the reviewer's requests / questions. Usually when PR authors show responsibility and dedication, reviewers (privileged or not) show dedication as well. If you've pushed a change, it's possible the reviewer wasn't notified about your push via email, so you can always [officially request them for a review](https://docs.github.com/en/github/collaborating-with-issues-and-pull-requests/requesting-a-pull-request-review), or just @ mention them and say you've addressed their comments. - - Lastly, you can always ask for help at [our Discourse Forum](https://discourse.nixos.org/), or more specifically, [at this thread](https://discourse.nixos.org/t/prs-in-distress/3604) or at [#nixos' IRC channel](https://webchat.freenode.net/#nixos). - -issues: - markComment: | - Hello, I'm a bot and I thank you in the name of the community for opening this issue. - - To help our human contributors focus on the most-relevant reports, I check up on old issues to see if they're still relevant. This issue has had no activity for 180 days, and so I marked it as stale, but you can rest assured it will never be closed by a non-human. - - The community would appreciate your effort in checking if the issue is still valid. If it isn't, please close it. - - If the issue persists, and you'd like to remove the stale label, you simply need to leave a comment. Your comment can be as simple as "still important to me". If you'd like it to get more attention, you can ask for help by searching for maintainers and people that previously touched related code and @ mention them in a comment. You can use [Git blame](https://git-scm.com/docs/git-blame) or [GitHub's web interface](https://docs.github.com/en/github/managing-files-in-a-repository/tracking-changes-in-a-file) on the relevant files to find them. - - Lastly, you can always ask for help at [our Discourse Forum](https://discourse.nixos.org/) or at [#nixos' IRC channel](https://webchat.freenode.net/#nixos). - -# Comment to post when closing a stale issue. Set to `false` to disable +markComment: | + I marked this as stale due to inactivity. → [More info](https://github.com/NixOS/nixpkgs/blob/master/.github/STALE-BOT.md) closeComment: false diff --git a/.github/workflows/editorconfig.yml b/.github/workflows/editorconfig.yml index 7f1808d35f2..d61882c5040 100644 --- a/.github/workflows/editorconfig.yml +++ b/.github/workflows/editorconfig.yml @@ -14,7 +14,7 @@ jobs: - name: Fetch editorconfig-checker if: env.GIT_DIFF env: - ECC_VERSION: "2.1.0" + ECC_VERSION: "2.2.0" ECC_URL: "https://github.com/editorconfig-checker/editorconfig-checker/releases/download" run: | curl -sSf -O -L -C - "$ECC_URL/$ECC_VERSION/ec-linux-amd64.tar.gz" && \ diff --git a/README.md b/README.md index d1187b37280..70d50e5efcd 100644 --- a/README.md +++ b/README.md @@ -46,9 +46,9 @@ Nixpkgs and NixOS are built and tested by our continuous integration system, [Hydra](https://hydra.nixos.org/). * [Continuous package builds for unstable/master](https://hydra.nixos.org/jobset/nixos/trunk-combined) -* [Continuous package builds for the NixOS 20.03 release](https://hydra.nixos.org/jobset/nixos/release-20.03) +* [Continuous package builds for the NixOS 20.09 release](https://hydra.nixos.org/jobset/nixos/release-20.09) * [Tests for unstable/master](https://hydra.nixos.org/job/nixos/trunk-combined/tested#tabs-constituents) -* [Tests for the NixOS 20.03 release](https://hydra.nixos.org/job/nixos/release-20.03/tested#tabs-constituents) +* [Tests for the NixOS 20.09 release](https://hydra.nixos.org/job/nixos/release-20.09/tested#tabs-constituents) Artifacts successfully built with Hydra are published to cache at https://cache.nixos.org/. When successful build and test criteria are diff --git a/doc/builders/packages/opengl.xml b/doc/builders/packages/opengl.xml index 5f4433a2884..dfd64b18858 100644 --- a/doc/builders/packages/opengl.xml +++ b/doc/builders/packages/opengl.xml @@ -4,6 +4,6 @@ OpenGL - Packages that use OpenGL have NixOS desktop as their primary target. The current solution for loading the GPU-specific drivers is based on libglvnd and looks for the driver implementation in LD_LIBRARY_PATH. If you are using a non-NixOS GNU/Linux/X11 desktop with free software video drivers, consider launching OpenGL-dependent programs from Nixpkgs with Nixpkgs versions of libglvnd and mesa_drivers in LD_LIBRARY_PATH. For proprietary video drivers you might have luck with also adding the corresponding video driver package. + Packages that use OpenGL have NixOS desktop as their primary target. The current solution for loading the GPU-specific drivers is based on libglvnd and looks for the driver implementation in LD_LIBRARY_PATH. If you are using a non-NixOS GNU/Linux/X11 desktop with free software video drivers, consider launching OpenGL-dependent programs from Nixpkgs with Nixpkgs versions of libglvnd and mesa.drivers in LD_LIBRARY_PATH. For proprietary video drivers you might have luck with also adding the corresponding video driver package. diff --git a/doc/contributing/coding-conventions.xml b/doc/contributing/coding-conventions.xml index fcb6501f615..e587275a638 100644 --- a/doc/contributing/coding-conventions.xml +++ b/doc/contributing/coding-conventions.xml @@ -522,6 +522,16 @@ args.stdenv.mkDerivation (args // { + + + If it’s a terminal emulator: + + + + applications/terminal-emulators (e.g. alacritty or rxvt or termite) + + + If it’s for video playback / editing: diff --git a/doc/languages-frameworks/haskell.section.md b/doc/languages-frameworks/haskell.section.md index cba4d0561b0..67318a5b746 100644 --- a/doc/languages-frameworks/haskell.section.md +++ b/doc/languages-frameworks/haskell.section.md @@ -3,1092 +3,11 @@ title: User's Guide for Haskell in Nixpkgs author: Peter Simons date: 2015-06-01 --- + # Haskell - -## How to install Haskell packages - -Nixpkgs distributes build instructions for all Haskell packages registered on -[Hackage](http://hackage.haskell.org/), but strangely enough normal Nix package -lookups don't seem to discover any of them, except for the default version of ghc, cabal-install, and stack: -``` -$ nix-env -i alex -error: selector ‘alex’ matches no derivations -$ nix-env -qa ghc -ghc-7.10.2 -``` - -The Haskell package set is not registered in the top-level namespace because it -is *huge*. If all Haskell packages were visible to these commands, then -name-based search/install operations would be much slower than they are now. We -avoided that by keeping all Haskell-related packages in a separate attribute -set called `haskellPackages`, which the following command will list: -``` -$ nix-env -f "" -qaP -A haskellPackages -haskellPackages.a50 a50-0.5 -haskellPackages.AAI AAI-0.2.0.1 -haskellPackages.abacate abacate-0.0.0.0 -haskellPackages.abc-puzzle abc-puzzle-0.2.1 -haskellPackages.abcBridge abcBridge-0.15 -haskellPackages.abcnotation abcnotation-1.9.0 -haskellPackages.abeson abeson-0.1.0.1 -[... some 14000 entries omitted ...] -``` - -To install any of those packages into your profile, refer to them by their -attribute path (first column): -```shell -nix-env -f "" -iA haskellPackages.Allure ... -``` - -The attribute path of any Haskell packages corresponds to the name of that -particular package on Hackage: the package `cabal-install` has the attribute -`haskellPackages.cabal-install`, and so on. (Actually, this convention causes -trouble with packages like `3dmodels` and `4Blocks`, because these names are -invalid identifiers in the Nix language. The issue of how to deal with these -rare corner cases is currently unresolved.) - -Haskell packages whose Nix name (second column) begins with a `haskell-` prefix -are packages that provide a library whereas packages without that prefix -provide just executables. Libraries may provide executables too, though: the -package `haskell-pandoc`, for example, installs both a library and an -application. You can install and use Haskell executables just like any other -program in Nixpkgs, but using Haskell libraries for development is a bit -trickier and we'll address that subject in great detail in section [How to -create a development environment](#how-to-create-a-development-environment). - -Attribute paths are deterministic inside of Nixpkgs, but the path necessary to -reach Nixpkgs varies from system to system. We dodged that problem by giving -`nix-env` an explicit `-f ""` parameter, but if you call `nix-env` -without that flag, then chances are the invocation fails: -``` -$ nix-env -iA haskellPackages.cabal-install -error: attribute ‘haskellPackages’ in selection path - ‘haskellPackages.cabal-install’ not found -``` - -On NixOS, for example, Nixpkgs does *not* exist in the top-level namespace by -default. To figure out the proper attribute path, it's easiest to query for the -path of a well-known Nixpkgs package, i.e.: -``` -$ nix-env -qaP coreutils -nixos.coreutils coreutils-8.23 -``` - -If your system responds like that (most NixOS installations will), then the -attribute path to `haskellPackages` is `nixos.haskellPackages`. Thus, if you -want to use `nix-env` without giving an explicit `-f` flag, then that's the way -to do it: -```shell -nix-env -qaP -A nixos.haskellPackages -nix-env -iA nixos.haskellPackages.cabal-install -``` - -Our current default compiler is GHC 8.8.x and the `haskellPackages` set -contains packages built with that particular version. Nixpkgs contains the last -three major releases of GHC and there is a whole family of package sets -available that defines Hackage packages built with each of those compilers, -too: -```shell -nix-env -f "" -qaP -A haskell.packages.ghc865 -nix-env -f "" -qaP -A haskell.packages.ghc8101 -``` - -The name `haskellPackages` is really just a synonym for -`haskell.packages.ghc882`, because we prefer that package set internally and -recommend it to our users as their default choice, but ultimately you are free -to compile your Haskell packages with any GHC version you please. The following -command displays the complete list of available compilers: -``` -$ nix-env -f "" -qaP -A haskell.compiler -haskell.compiler.ghc8101 ghc-8.10.1 -haskell.compiler.integer-simple.ghc8101 ghc-8.10.1 -haskell.compiler.ghcHEAD ghc-8.11.20200505 -haskell.compiler.integer-simple.ghcHEAD ghc-8.11.20200505 -haskell.compiler.ghc822Binary ghc-8.2.2-binary -haskell.compiler.ghc844 ghc-8.4.4 -haskell.compiler.ghc863Binary ghc-8.6.3-binary -haskell.compiler.ghc865 ghc-8.6.5 -haskell.compiler.integer-simple.ghc865 ghc-8.6.5 -haskell.compiler.ghc882 ghc-8.8.2 -haskell.compiler.integer-simple.ghc882 ghc-8.8.2 -haskell.compiler.ghc883 ghc-8.8.3 -haskell.compiler.integer-simple.ghc883 ghc-8.8.3 -haskell.compiler.ghcjs ghcjs-8.6.0.1 -``` - -We have no package sets for `jhc` or `uhc` yet, unfortunately, but for every -version of GHC listed above, there exists a package set based on that compiler. -Also, the attributes `haskell.compiler.ghcXYC` and -`haskell.packages.ghcXYC.ghc` are synonymous for the sake of convenience. - -## How to create a development environment - -### How to install a compiler - -A simple development environment consists of a Haskell compiler and one or both -of the tools `cabal-install` and `stack`. We saw in section -[How to install Haskell packages](#how-to-install-haskell-packages) how you can install those programs into your -user profile: -```shell -nix-env -f "" -iA haskellPackages.ghc haskellPackages.cabal-install -``` - -Instead of the default package set `haskellPackages`, you can also use the more -precise name `haskell.compiler.ghc7102`, which has the advantage that it refers -to the same GHC version regardless of what Nixpkgs considers "default" at any -given time. - -Once you've made those tools available in `$PATH`, it's possible to build -Hackage packages the same way people without access to Nix do it all the time: -```shell -cabal get lens-4.11 && cd lens-4.11 -cabal install -j --dependencies-only -cabal configure -cabal build -``` - -If you enjoy working with Cabal sandboxes, then that's entirely possible too: -just execute the command -```shell -cabal sandbox init -``` -before installing the required dependencies. - -The `nix-shell` utility makes it easy to switch to a different compiler -version; just enter the Nix shell environment with the command -```shell -nix-shell -p haskell.compiler.ghc784 -``` -to bring GHC 7.8.4 into `$PATH`. Alternatively, you can use Stack instead of -`nix-shell` directly to select compiler versions and other build tools -per-project. It uses `nix-shell` under the hood when Nix support is turned on. -See [How to build a Haskell project using Stack](#how-to-build-a-haskell-project-using-stack). - -If you're using `cabal-install`, re-running `cabal configure` inside the spawned -shell switches your build to use that compiler instead. If you're working on -a project that doesn't depend on any additional system libraries outside of GHC, -then it's even sufficient to just run the `cabal configure` command inside of -the shell: -```shell -nix-shell -p haskell.compiler.ghc784 --command "cabal configure" -``` - -Afterwards, all other commands like `cabal build` work just fine in any shell -environment, because the configure phase recorded the absolute paths to all -required tools like GHC in its build configuration inside of the `dist/` -directory. Please note, however, that `nix-collect-garbage` can break such an -environment because the Nix store paths created by `nix-shell` aren't "alive" -anymore once `nix-shell` has terminated. If you find that your Haskell builds -no longer work after garbage collection, then you'll have to re-run `cabal -configure` inside of a new `nix-shell` environment. - -### How to install a compiler with libraries - -GHC expects to find all installed libraries inside of its own `lib` directory. -This approach works fine on traditional Unix systems, but it doesn't work for -Nix, because GHC's store path is immutable once it's built. We cannot install -additional libraries into that location. As a consequence, our copies of GHC -don't know any packages except their own core libraries, like `base`, -`containers`, `Cabal`, etc. - -We can register additional libraries to GHC, however, using a special build -function called `ghcWithPackages`. That function expects one argument: a -function that maps from an attribute set of Haskell packages to a list of -packages, which determines the libraries known to that particular version of -GHC. For example, the Nix expression `ghcWithPackages (pkgs: [pkgs.mtl])` -generates a copy of GHC that has the `mtl` library registered in addition to -its normal core packages: -``` -$ nix-shell -p "haskellPackages.ghcWithPackages (pkgs: [pkgs.mtl])" - -[nix-shell:~]$ ghc-pkg list mtl -/nix/store/zy79...-ghc-7.10.2/lib/ghc-7.10.2/package.conf.d: - mtl-2.2.1 -``` - -This function allows users to define their own development environment by means -of an override. After adding the following snippet to `~/.config/nixpkgs/config.nix`, -```nix -{ - packageOverrides = super: let self = super.pkgs; in - { - myHaskellEnv = self.haskell.packages.ghc7102.ghcWithPackages - (haskellPackages: with haskellPackages; [ - # libraries - arrows async cgi criterion - # tools - cabal-install haskintex - ]); - }; -} -``` -it's possible to install that compiler with `nix-env -f "" -iA -myHaskellEnv`. If you'd like to switch that development environment to a -different version of GHC, just replace the `ghc7102` bit in the previous -definition with the appropriate name. Of course, it's also possible to define -any number of these development environments! (You can't install two of them -into the same profile at the same time, though, because that would result in -file conflicts.) - -The generated `ghc` program is a wrapper script that re-directs the real -GHC executable to use a new `lib` directory --- one that we specifically -constructed to contain all those packages the user requested: -``` -$ cat $(type -p ghc) -#! /nix/store/xlxj...-bash-4.3-p33/bin/bash -e -export NIX_GHC=/nix/store/19sm...-ghc-7.10.2/bin/ghc -export NIX_GHCPKG=/nix/store/19sm...-ghc-7.10.2/bin/ghc-pkg -export NIX_GHC_DOCDIR=/nix/store/19sm...-ghc-7.10.2/share/doc/ghc/html -export NIX_GHC_LIBDIR=/nix/store/19sm...-ghc-7.10.2/lib/ghc-7.10.2 -exec /nix/store/j50p...-ghc-7.10.2/bin/ghc "-B$NIX_GHC_LIBDIR" "$@" -``` - -The variables `$NIX_GHC`, `$NIX_GHCPKG`, etc. point to the *new* store path -`ghcWithPackages` constructed specifically for this environment. The last line -of the wrapper script then executes the real `ghc`, but passes the path to the -new `lib` directory using GHC's `-B` flag. - -The purpose of those environment variables is to work around an impurity in the -popular [ghc-paths](http://hackage.haskell.org/package/ghc-paths) library. That -library promises to give its users access to GHC's installation paths. Only, -the library can't possible know that path when it's compiled, because the path -GHC considers its own is determined only much later, when the user configures -it through `ghcWithPackages`. So we [patched -ghc-paths](https://github.com/NixOS/nixpkgs/blob/master/pkgs/development/haskell-modules/patches/ghc-paths-nix.patch) -to return the paths found in those environment variables at run-time rather -than trying to guess them at compile-time. - -To make sure that mechanism works properly all the time, we recommend that you -set those variables to meaningful values in your shell environment, too, i.e. -by adding the following code to your `~/.bashrc`: -```bash -if type >/dev/null 2>&1 -p ghc; then - eval "$(egrep ^export "$(type -p ghc)")" -fi -``` - -If you are certain that you'll use only one GHC environment which is located in -your user profile, then you can use the following code, too, which has the -advantage that it doesn't contain any paths from the Nix store, i.e. those -settings always remain valid even if a `nix-env -u` operation updates the GHC -environment in your profile: -```bash -if [ -e ~/.nix-profile/bin/ghc ]; then - export NIX_GHC="$HOME/.nix-profile/bin/ghc" - export NIX_GHCPKG="$HOME/.nix-profile/bin/ghc-pkg" - export NIX_GHC_DOCDIR="$HOME/.nix-profile/share/doc/ghc/html" - export NIX_GHC_LIBDIR="$HOME/.nix-profile/lib/ghc-$($NIX_GHC --numeric-version)" -fi -``` - -### How to install a compiler with libraries, hoogle and documentation indexes - -If you plan to use your environment for interactive programming, not just -compiling random Haskell code, you might want to replace `ghcWithPackages` in -all the listings above with `ghcWithHoogle`. - -This environment generator not only produces an environment with GHC and all -the specified libraries, but also generates a `hoogle` and `haddock` indexes -for all the packages, and provides a wrapper script around `hoogle` binary that -uses all those things. A precise name for this thing would be -"`ghcWithPackagesAndHoogleAndDocumentationIndexes`", which is, regrettably, too -long and scary. - -For example, installing the following environment -```nix -{ - packageOverrides = super: let self = super.pkgs; in - { - myHaskellEnv = self.haskellPackages.ghcWithHoogle - (haskellPackages: with haskellPackages; [ - # libraries - arrows async cgi criterion - # tools - cabal-install haskintex - ]); - }; -} -``` -allows one to browse module documentation index [not too dissimilar to -this](https://downloads.haskell.org/~ghc/latest/docs/html/libraries/index.html) -for all the specified packages and their dependencies by directing a browser of -choice to `~/.nix-profile/share/doc/hoogle/index.html` (or -`/run/current-system/sw/share/doc/hoogle/index.html` in case you put it in -`environment.systemPackages` in NixOS). - -After you've marveled enough at that try adding the following to your -`~/.ghc/ghci.conf` -``` -:def hoogle \s -> return $ ":! hoogle search -cl --count=15 \"" ++ s ++ "\"" -:def doc \s -> return $ ":! hoogle search -cl --info \"" ++ s ++ "\"" -``` -and test it by typing into `ghci`: -``` -:hoogle a -> a -:doc a -> a -``` - -Be sure to note the links to `haddock` files in the output. With any modern and -properly configured terminal emulator you can just click those links to -navigate there. - -Finally, you can run -```shell -hoogle server --local -p 8080 -``` -and navigate to http://localhost:8080/ for your own local -[Hoogle](https://www.haskell.org/hoogle/). The `--local` flag makes the hoogle -server serve files from your nix store over http, without the flag it will use -`file://` URIs. Note, however, that Firefox and possibly other browsers -disallow navigation from `http://` to `file://` URIs for security reasons, -which might be quite an inconvenience. Versions before v5 did not have this -flag. See -[this page](http://kb.mozillazine.org/Links_to_local_pages_do_not_work) for -workarounds. - -For NixOS users there's a service which runs this exact command for you. -Specify the `packages` you want documentation for and the `haskellPackages` set -you want them to come from. Add the following to `configuration.nix`. - -```nix -services.hoogle = { - enable = true; - packages = (hpkgs: with hpkgs; [text cryptonite]); - haskellPackages = pkgs.haskellPackages; -}; -``` - -### How to build a Haskell project using Stack - -[Stack](http://haskellstack.org) is a popular build tool for Haskell projects. -It has first-class support for Nix. Stack can optionally use Nix to -automatically select the right version of GHC and other build tools to build, -test and execute apps in an existing project downloaded from somewhere on the -Internet. Pass the `--nix` flag to any `stack` command to do so, e.g. -```shell -git clone --recurse-submodules https://github.com/yesodweb/wai.git -cd wai -stack --nix build -``` - -If you want `stack` to use Nix by default, you can add a `nix` section to the -`stack.yaml` file, as explained in the [Stack documentation][stack-nix-doc]. For -example: -```yaml -nix: - enable: true - packages: [pkgconfig zeromq zlib] -``` - -The example configuration snippet above tells Stack to create an ad hoc -environment for `nix-shell` as in the below section, in which the `pkgconfig`, -`zeromq` and `zlib` packages from Nixpkgs are available. All `stack` commands -will implicitly be executed inside this ad hoc environment. - -Some projects have more sophisticated needs. For examples, some ad hoc -environments might need to expose Nixpkgs packages compiled in a certain way, or -with extra environment variables. In these cases, you'll need a `shell` field -instead of `packages`: -```yaml -nix: - enable: true - shell-file: shell.nix -``` - -For more on how to write a `shell.nix` file see the below section. You'll need -to express a derivation. Note that Nixpkgs ships with a convenience wrapper -function around `mkDerivation` called `haskell.lib.buildStackProject` to help you -create this derivation in exactly the way Stack expects. However for this to work -you need to disable the sandbox, which you can do by using `--option sandbox relaxed` -or `--option sandbox false` to the Nix command. All of the same inputs -as `mkDerivation` can be provided. For example, to build a Stack project that -including packages that link against a version of the R library compiled with -special options turned on: -```nix -with (import { }); - -let R = pkgs.R.override { enableStrictBarrier = true; }; -in -haskell.lib.buildStackProject { - name = "HaskellR"; - buildInputs = [ R zeromq zlib ]; -} -``` - -You can select a particular GHC version to compile with by setting the -`ghc` attribute as an argument to `buildStackProject`. Better yet, let -Stack choose what GHC version it wants based on the snapshot specified -in `stack.yaml` (only works with Stack >= 1.1.3): -```nix -{nixpkgs ? import { }, ghc ? nixpkgs.ghc}: - -with nixpkgs; - -let R = pkgs.R.override { enableStrictBarrier = true; }; -in -haskell.lib.buildStackProject { - name = "HaskellR"; - buildInputs = [ R zeromq zlib ]; - inherit ghc; -} -``` - -[stack-nix-doc]: http://docs.haskellstack.org/en/stable/nix_integration.html - -### How to create ad hoc environments for `nix-shell` - -The easiest way to create an ad hoc development environment is to run -`nix-shell` with the appropriate GHC environment given on the command-line: -```shell -nix-shell -p "haskellPackages.ghcWithPackages (pkgs: with pkgs; [mtl pandoc])" -``` - -For more sophisticated use-cases, however, it's more convenient to save the -desired configuration in a file called `shell.nix` that looks like this: -```nix -{ nixpkgs ? import {}, compiler ? "ghc7102" }: -let - inherit (nixpkgs) pkgs; - ghc = pkgs.haskell.packages.${compiler}.ghcWithPackages (ps: with ps; [ - monad-par mtl - ]); -in -pkgs.stdenv.mkDerivation { - name = "my-haskell-env-0"; - buildInputs = [ ghc ]; - shellHook = "eval $(egrep ^export ${ghc}/bin/ghc)"; -} -``` - -Now run `nix-shell` --- or even `nix-shell --pure` --- to enter a shell -environment that has the appropriate compiler in `$PATH`. If you use `--pure`, -then add all other packages that your development environment needs into the -`buildInputs` attribute. If you'd like to switch to a different compiler -version, then pass an appropriate `compiler` argument to the expression, i.e. -`nix-shell --argstr compiler ghc784`. - -If you need such an environment because you'd like to compile a Hackage package -outside of Nix --- i.e. because you're hacking on the latest version from Git ----, then the package set provides suitable nix-shell environments for you -already! Every Haskell package has an `env` attribute that provides a shell -environment suitable for compiling that particular package. If you'd like to -hack the `lens` library, for example, then you just have to check out the -source code and enter the appropriate environment: -``` -$ cabal get lens-4.11 && cd lens-4.11 -Downloading lens-4.11... -Unpacking to lens-4.11/ - -$ nix-shell "" -A haskellPackages.lens.env -[nix-shell:/tmp/lens-4.11]$ -``` - -At point, you can run `cabal configure`, `cabal build`, and all the other -development commands. Note that you need `cabal-install` installed in your -`$PATH` already to use it here --- the `nix-shell` environment does not provide -it. - -## How to create Nix builds for your own private Haskell packages - -If your own Haskell packages have build instructions for Cabal, then you can -convert those automatically into build instructions for Nix using the -`cabal2nix` utility, which you can install into your profile by running -`nix-env -i cabal2nix`. - -### How to build a stand-alone project - -For example, let's assume that you're working on a private project called -`foo`. To generate a Nix build expression for it, change into the project's -top-level directory and run the command: -```shell -cabal2nix . > foo.nix -``` -Then write the following snippet into a file called `default.nix`: -```nix -{ nixpkgs ? import {}, compiler ? "ghc7102" }: -nixpkgs.pkgs.haskell.packages.${compiler}.callPackage ./foo.nix { } -``` - -Finally, store the following code in a file called `shell.nix`: -```nix -{ nixpkgs ? import {}, compiler ? "ghc7102" }: -(import ./default.nix { inherit nixpkgs compiler; }).env -``` - -At this point, you can run `nix-build` to have Nix compile your project and -install it into a Nix store path. The local directory will contain a symlink -called `result` after `nix-build` returns that points into that location. Of -course, passing the flag `--argstr compiler ghc763` allows switching the build -to any version of GHC currently supported. - -Furthermore, you can call `nix-shell` to enter an interactive development -environment in which you can use `cabal configure` and `cabal build` to develop -your code. That environment will automatically contain a proper GHC derivation -with all the required libraries registered as well as all the system-level -libraries your package might need. - -If your package does not depend on any system-level libraries, then it's -sufficient to run -```shell -nix-shell --command "cabal configure" -``` -once to set up your build. `cabal-install` determines the absolute paths to all -resources required for the build and writes them into a config file in the -`dist/` directory. Once that's done, you can run `cabal build` and any other -command for that project even outside of the `nix-shell` environment. This -feature is particularly nice for those of us who like to edit their code with -an IDE, like Emacs' `haskell-mode`, because it's not necessary to start Emacs -inside of nix-shell just to make it find out the necessary settings for -building the project; `cabal-install` has already done that for us. - -If you want to do some quick-and-dirty hacking and don't want to bother setting -up a `default.nix` and `shell.nix` file manually, then you can use the -`--shell` flag offered by `cabal2nix` to have it generate a stand-alone -`nix-shell` environment for you. With that feature, running -```shell -cabal2nix --shell . > shell.nix -nix-shell --command "cabal configure" -``` -is usually enough to set up a build environment for any given Haskell package. -You can even use that generated file to run `nix-build`, too: -```shell -nix-build shell.nix -``` - -### How to build projects that depend on each other - -If you have multiple private Haskell packages that depend on each other, then -you'll have to register those packages in the Nixpkgs set to make them visible -for the dependency resolution performed by `callPackage`. First of all, change -into each of your projects top-level directories and generate a `default.nix` -file with `cabal2nix`: -```shell -cd ~/src/foo && cabal2nix . > default.nix -cd ~/src/bar && cabal2nix . > default.nix -``` -Then edit your `~/.config/nixpkgs/config.nix` file to register those builds in the -default Haskell package set: -```nix -{ - packageOverrides = super: let self = super.pkgs; in - { - haskellPackages = super.haskellPackages.override { - overrides = self: super: { - foo = self.callPackage ../src/foo {}; - bar = self.callPackage ../src/bar {}; - }; - }; - }; -} -``` -Once that's accomplished, `nix-env -f "" -qA haskellPackages` will -show your packages like any other package from Hackage, and you can build them -```shell -nix-build "" -A haskellPackages.foo -``` -or enter an interactive shell environment suitable for building them: -```shell -nix-shell "" -A haskellPackages.bar.env -``` - -## Miscellaneous Topics - -### How to build with profiling enabled - -Every Haskell package set takes a function called `overrides` that you can use -to manipulate the package as much as you please. One useful application of this -feature is to replace the default `mkDerivation` function with one that enables -library profiling for all packages. To accomplish that add the following -snippet to your `~/.config/nixpkgs/config.nix` file: -```nix -{ - packageOverrides = super: let self = super.pkgs; in - { - profiledHaskellPackages = self.haskellPackages.override { - overrides = self: super: { - mkDerivation = args: super.mkDerivation (args // { - enableLibraryProfiling = true; - }); - }; - }; - }; -} -``` -Then, replace instances of `haskellPackages` in the `cabal2nix`-generated -`default.nix` or `shell.nix` files with `profiledHaskellPackages`. - -### How to override package versions in a compiler-specific package set - -Nixpkgs provides the latest version of -[`ghc-events`](http://hackage.haskell.org/package/ghc-events), which is 0.4.4.0 -at the time of this writing. This is fine for users of GHC 7.10.x, but GHC -7.8.4 cannot compile that binary. Now, one way to solve that problem is to -register an older version of `ghc-events` in the 7.8.x-specific package set. -The first step is to generate Nix build instructions with `cabal2nix`: -```shell -cabal2nix cabal://ghc-events-0.4.3.0 > ~/.nixpkgs/ghc-events-0.4.3.0.nix -``` -Then add the override in `~/.config/nixpkgs/config.nix`: -```nix -{ - packageOverrides = super: let self = super.pkgs; in - { - haskell = super.haskell // { - packages = super.haskell.packages // { - ghc784 = super.haskell.packages.ghc784.override { - overrides = self: super: { - ghc-events = self.callPackage ./ghc-events-0.4.3.0.nix {}; - }; - }; - }; - }; - }; -} -``` - -This code is a little crazy, no doubt, but it's necessary because the intuitive -version -```nix -{ # ... - - haskell.packages.ghc784 = super.haskell.packages.ghc784.override { - overrides = self: super: { - ghc-events = self.callPackage ./ghc-events-0.4.3.0.nix {}; - }; - }; -} -``` -doesn't do what we want it to: that code replaces the `haskell` package set in -Nixpkgs with one that contains only one entry,`packages`, which contains only -one entry `ghc784`. This override loses the `haskell.compiler` set, and it -loses the `haskell.packages.ghcXYZ` sets for all compilers but GHC 7.8.4. To -avoid that problem, we have to perform the convoluted little dance from above, -iterating over each step in hierarchy. - -Once it's accomplished, however, we can install a variant of `ghc-events` -that's compiled with GHC 7.8.4: -```shell -nix-env -f "" -iA haskell.packages.ghc784.ghc-events -``` -Unfortunately, it turns out that this build fails again while executing the -test suite! Apparently, the release archive on Hackage is missing some data -files that the test suite requires, so we cannot run it. We accomplish that by -re-generating the Nix expression with the `--no-check` flag: -```shell -cabal2nix --no-check cabal://ghc-events-0.4.3.0 > ~/.nixpkgs/ghc-events-0.4.3.0.nix -``` -Now the builds succeeds. - -Of course, in the concrete example of `ghc-events` this whole exercise is not -an ideal solution, because `ghc-events` can analyze the output emitted by any -version of GHC later than 6.12 regardless of the compiler version that was used -to build the `ghc-events` executable, so strictly speaking there's no reason to -prefer one built with GHC 7.8.x in the first place. However, for users who -cannot use GHC 7.10.x at all for some reason, the approach of downgrading to an -older version might be useful. - -### How to override packages in all compiler-specific package sets - -In the previous section we learned how to override a package in a single -compiler-specific package set. You may have some overrides defined that you want -to use across multiple package sets. To accomplish this you could use the -technique that we learned in the previous section by repeating the overrides for -all the compiler-specific package sets. For example: - -```nix -{ - packageOverrides = super: let self = super.pkgs; in - { - haskell = super.haskell // { - packages = super.haskell.packages // { - ghc784 = super.haskell.packages.ghc784.override { - overrides = self: super: { - my-package = ...; - my-other-package = ...; - }; - }; - ghc822 = super.haskell.packages.ghc784.override { - overrides = self: super: { - my-package = ...; - my-other-package = ...; - }; - }; - ... - }; - }; - }; -} -``` - -However there's a more convenient way to override all compiler-specific package -sets at once: - -```nix -{ - packageOverrides = super: let self = super.pkgs; in - { - haskell = super.haskell // { - packageOverrides = self: super: { - my-package = ...; - my-other-package = ...; - }; - }; - }; -} -``` - -### How to specify source overrides for your Haskell package - -When starting a Haskell project you can use `developPackage` -to define a derivation for your package at the `root` path -as well as source override versions for Hackage packages, like so: - -```nix -# default.nix -{ compilerVersion ? "ghc842" }: -let - # pinning nixpkgs using new Nix 2.0 builtin `fetchGit` - pkgs = import (fetchGit (import ./version.nix)) { }; - compiler = pkgs.haskell.packages."${compilerVersion}"; - pkg = compiler.developPackage { - root = ./.; - source-overrides = { - # Let's say the GHC 8.4.2 haskellPackages uses 1.6.0.0 and your test suite is incompatible with >= 1.6.0.0 - HUnit = "1.5.0.0"; - }; - }; -in pkg -``` - -This could be used in place of a simplified `stack.yaml` defining a Nix -derivation for your Haskell package. - -As you can see this allows you to specify only the source version found on -Hackage and nixpkgs will take care of the rest. - -You can also specify `buildInputs` for your Haskell derivation for packages -that directly depend on external libraries like so: - -```nix -# default.nix -{ compilerVersion ? "ghc842" }: -let - # pinning nixpkgs using new Nix 2.0 builtin `fetchGit` - pkgs = import (fetchGit (import ./version.nix)) { }; - compiler = pkgs.haskell.packages."${compilerVersion}"; - pkg = compiler.developPackage { - root = ./.; - source-overrides = { - HUnit = "1.5.0.0"; # Let's say the GHC 8.4.2 haskellPackages uses 1.6.0.0 and your test suite is incompatible with >= 1.6.0.0 - }; - }; - # in case your package source depends on any libraries directly, not just transitively. - buildInputs = [ zlib ]; -in pkg.overrideAttrs(attrs: { - buildInputs = attrs.buildInputs ++ buildInputs; -}) -``` - -Notice that you will need to override (via `overrideAttrs` or similar) the -derivation returned by the `developPackage` Nix lambda as there is no `buildInputs` -named argument you can pass directly into the `developPackage` lambda. - -### How to recover from GHC's infamous non-deterministic library ID bug - -GHC and distributed build farms don't get along well: - - - https://ghc.haskell.org/trac/ghc/ticket/4012 - -When you see an error like this one -``` -package foo-0.7.1.0 is broken due to missing package -text-1.2.0.4-98506efb1b9ada233bb5c2b2db516d91 -``` -then you have to download and re-install `foo` and all its dependents from -scratch: -```shell -nix-store -q --referrers /nix/store/*-haskell-text-1.2.0.4 \ - | xargs -L 1 nix-store --repair-path -``` - -If you're using additional Hydra servers other than `hydra.nixos.org`, then it -might be necessary to purge the local caches that store data from those -machines to disable these binary channels for the duration of the previous -command, i.e. by running: -```shell -rm ~/.cache/nix/binary-cache*.sqlite -``` - -### Builds on Darwin fail with `math.h` not found - -Users of GHC on Darwin have occasionally reported that builds fail, because the -compiler complains about a missing include file: -``` -fatal error: 'math.h' file not found -``` -The issue has been discussed at length in [ticket -6390](https://github.com/NixOS/nixpkgs/issues/6390), and so far no good -solution has been proposed. As a work-around, users who run into this problem -can configure the environment variables -```shell -export NIX_CFLAGS_COMPILE="-idirafter /usr/include" -export NIX_CFLAGS_LINK="-L/usr/lib" -``` -in their `~/.bashrc` file to avoid the compiler error. - -### Builds using Stack complain about missing system libraries - -``` --- While building package zlib-0.5.4.2 using: - runhaskell -package=Cabal-1.22.4.0 -clear-package-db [... lots of flags ...] -Process exited with code: ExitFailure 1 -Logs have been written to: /home/foo/src/stack-ide/.stack-work/logs/zlib-0.5.4.2.log - -Configuring zlib-0.5.4.2... -Setup.hs: Missing dependency on a foreign library: -* Missing (or bad) header file: zlib.h -This problem can usually be solved by installing the system package that -provides this library (you may need the "-dev" version). If the library is -already installed but in a non-standard location then you can use the flags ---extra-include-dirs= and --extra-lib-dirs= to specify where it is. -If the header file does exist, it may contain errors that are caught by the C -compiler at the preprocessing stage. In this case you can re-run configure -with the verbosity flag -v3 to see the error messages. -``` - -When you run the build inside of the nix-shell environment, the system -is configured to find `libz.so` without any special flags -- the compiler -and linker "just know" how to find it. Consequently, Cabal won't record -any search paths for `libz.so` in the package description, which means -that the package works fine inside of nix-shell, but once you leave the -shell the shared object can no longer be found. That issue is by no -means specific to Stack: you'll have that problem with any other -Haskell package that's built inside of nix-shell but run outside of that -environment. - -You can remedy this issue in several ways. The easiest is to add a `nix` section -to the `stack.yaml` like the following: -```yaml -nix: - enable: true - packages: [ zlib ] -``` - -Stack's Nix support knows to add `${zlib.out}/lib` and `${zlib.dev}/include` -as an `--extra-lib-dirs` and `extra-include-dirs`, respectively. -Alternatively, you can achieve the same effect by hand. First of all, run -``` -$ nix-build --no-out-link "" -A zlib -/nix/store/alsvwzkiw4b7ip38l4nlfjijdvg3fvzn-zlib-1.2.8 -``` -to find out the store path of the system's zlib library. Now, you can - - 1. add that path (plus a "/lib" suffix) to your `$LD_LIBRARY_PATH` - environment variable to make sure your system linker finds `libz.so` - automatically. It's no pretty solution, but it will work. - - 2. As a variant of (1), you can also install any number of system - libraries into your user's profile (or some other profile) and point - `$LD_LIBRARY_PATH` to that profile instead, so that you don't have to - list dozens of those store paths all over the place. - - 3. The solution I prefer is to call stack with an appropriate - --extra-lib-dirs flag like so: - ```shell - stack --extra-lib-dirs=/nix/store/alsvwzkiw4b7ip38l4nlfjijdvg3fvzn-zlib-1.2.8/lib build - ``` - -Typically, you'll need `--extra-include-dirs` as well. It's possible -to add those flag to the project's `stack.yaml` or your user's -global `~/.stack/global/stack.yaml` file so that you don't have to -specify them manually every time. But again, you're likely better off -using Stack's Nix support instead. - -The same thing applies to `cabal configure`, of course, if you're -building with `cabal-install` instead of Stack. - -### Creating statically linked binaries - -There are two levels of static linking. The first option is to configure the -build with the Cabal flag `--disable-executable-dynamic`. In Nix expressions, -this can be achieved by setting the attribute: -``` -enableSharedExecutables = false; -``` -That gives you a binary with statically linked Haskell libraries and -dynamically linked system libraries. - -To link both Haskell libraries and system libraries statically, the additional -flags `--ghc-option=-optl=-static --ghc-option=-optl=-pthread` need to be used. -In Nix, this is accomplished with: -``` -configureFlags = [ "--ghc-option=-optl=-static" "--ghc-option=-optl=-pthread" ]; -``` - -It's important to realize, however, that most system libraries in Nix are -built as shared libraries only, i.e. there is just no static library -available that Cabal could link! - -### Building GHC with integer-simple - -By default GHC implements the Integer type using the -[GNU Multiple Precision Arithmetic (GMP) library](https://gmplib.org/). -The implementation can be found in the -[integer-gmp](http://hackage.haskell.org/package/integer-gmp) package. - -A potential problem with this is that GMP is licensed under the -[GNU Lesser General Public License (LGPL)](https://www.gnu.org/copyleft/lesser.html), -a kind of "copyleft" license. According to the terms of the LGPL, paragraph 5, -you may distribute a program that is designed to be compiled and dynamically -linked with the library under the terms of your choice (i.e., commercially) but -if your program incorporates portions of the library, if it is linked -statically, then your program is a "derivative"--a "work based on the -library"--and according to paragraph 2, section c, you "must cause the whole of -the work to be licensed" under the terms of the LGPL (including for free). - -The LGPL licensing for GMP is a problem for the overall licensing of binary -programs compiled with GHC because most distributions (and builds) of GHC use -static libraries. (Dynamic libraries are currently distributed only for macOS.) -The LGPL licensing situation may be worse: even though -[The Glasgow Haskell Compiler License](https://www.haskell.org/ghc/license) -is essentially a "free software" license (BSD3), according to -paragraph 2 of the LGPL, GHC must be distributed under the terms of the LGPL! - -To work around these problems GHC can be build with a slower but LGPL-free -alternative implementation for Integer called -[integer-simple](http://hackage.haskell.org/package/integer-simple). - -To get a GHC compiler build with `integer-simple` instead of `integer-gmp` use -the attribute: `haskell.compiler.integer-simple."${ghcVersion}"`. -For example: -``` -$ nix-build -E '(import {}).haskell.compiler.integer-simple.ghc802' -... -$ result/bin/ghc-pkg list | grep integer - integer-simple-0.1.1.1 -``` -The following command displays the complete list of GHC compilers build with `integer-simple`: -``` -$ nix-env -f "" -qaP -A haskell.compiler.integer-simple -haskell.compiler.integer-simple.ghc7102 ghc-7.10.2 -haskell.compiler.integer-simple.ghc7103 ghc-7.10.3 -haskell.compiler.integer-simple.ghc722 ghc-7.2.2 -haskell.compiler.integer-simple.ghc742 ghc-7.4.2 -haskell.compiler.integer-simple.ghc783 ghc-7.8.3 -haskell.compiler.integer-simple.ghc784 ghc-7.8.4 -haskell.compiler.integer-simple.ghc801 ghc-8.0.1 -haskell.compiler.integer-simple.ghc802 ghc-8.0.2 -haskell.compiler.integer-simple.ghcHEAD ghc-8.1.20170106 -``` - -To get a package set supporting `integer-simple` use the attribute: -`haskell.packages.integer-simple."${ghcVersion}"`. For example -use the following to get the `scientific` package build with `integer-simple`: -```shell -nix-build -A haskell.packages.integer-simple.ghc802.scientific -``` - -### Quality assurance - -The `haskell.lib` library includes a number of functions for checking for -various imperfections in Haskell packages. It's useful to apply these functions -to your own Haskell packages and integrate that in a Continuous Integration -server like [hydra](https://nixos.org/hydra/) to assure your packages maintain a -minimum level of quality. This section discusses some of these functions. - -#### failOnAllWarnings - -Applying `haskell.lib.failOnAllWarnings` to a Haskell package enables the -`-Wall` and `-Werror` GHC options to turn all warnings into build failures. - -#### buildStrictly - -Applying `haskell.lib.buildStrictly` to a Haskell package calls -`failOnAllWarnings` on the given package to turn all warnings into build -failures. Additionally the source of your package is gotten from first invoking -`cabal sdist` to ensure all needed files are listed in the Cabal file. - -#### checkUnusedPackages - -Applying `haskell.lib.checkUnusedPackages` to a Haskell package invokes -the [packunused](http://hackage.haskell.org/package/packunused) tool on the -package. `packunused` complains when it finds packages listed as build-depends -in the Cabal file which are redundant. For example: - -``` -$ nix-build -E 'let pkgs = import {}; in pkgs.haskell.lib.checkUnusedPackages {} pkgs.haskellPackages.scientific' -these derivations will be built: - /nix/store/3lc51cxj2j57y3zfpq5i69qbzjpvyci1-scientific-0.3.5.1.drv -... -detected package components -~~~~~~~~~~~~~~~~~~~~~~~~~~~ - - - library - - testsuite(s): test-scientific - - benchmark(s): bench-scientific* - -(component names suffixed with '*' are not configured to be built) - -library -~~~~~~~ - -The following package dependencies seem redundant: - - - ghc-prim-0.5.0.0 - -testsuite(test-scientific) -~~~~~~~~~~~~~~~~~~~~~~~~~~ - -no redundant packages dependencies found - -builder for ‘/nix/store/3lc51cxj2j57y3zfpq5i69qbzjpvyci1-scientific-0.3.5.1.drv’ failed with exit code 1 -error: build of ‘/nix/store/3lc51cxj2j57y3zfpq5i69qbzjpvyci1-scientific-0.3.5.1.drv’ failed -``` - -As you can see, `packunused` finds out that although the testsuite component has -no redundant dependencies the library component of `scientific-0.3.5.1` depends -on `ghc-prim` which is unused in the library. - -### Using hackage2nix with nixpkgs - -Hackage package derivations are found in the -[`hackage-packages.nix`](https://github.com/NixOS/nixpkgs/blob/master/pkgs/development/haskell-modules/hackage-packages.nix) -file within `nixpkgs` and are used as the initial package set for -`haskellPackages`. The `hackage-packages.nix` file is not meant to be edited -by hand, but rather autogenerated by [`hackage2nix`](https://github.com/NixOS/cabal2nix/tree/master/hackage2nix), -which by default uses the [`configuration-hackage2nix.yaml`](https://github.com/NixOS/nixpkgs/blob/master/pkgs/development/haskell-modules/configuration-hackage2nix.yaml) -file to generate all the derivations. - -To modify the contents `configuration-hackage2nix.yaml`, follow the -instructions on [`hackage2nix`](https://github.com/NixOS/cabal2nix/tree/master/hackage2nix). - -## Other resources - - - The Youtube video [Nix Loves Haskell](https://www.youtube.com/watch?v=BsBhi_r-OeE) - provides an introduction into Haskell NG aimed at beginners. The slides are - available at http://cryp.to/nixos-meetup-3-slides.pdf and also -- in a form - ready for cut & paste -- at - https://github.com/NixOS/cabal2nix/blob/master/doc/nixos-meetup-3-slides.md. - - - Another Youtube video is [Escaping Cabal Hell with Nix](https://www.youtube.com/watch?v=mQd3s57n_2Y), - which discusses the subject of Haskell development with Nix but also provides - a basic introduction to Nix as well, i.e. it's suitable for viewers with - almost no prior Nix experience. - - - Oliver Charles wrote a very nice [Tutorial how to develop Haskell packages with Nix](http://wiki.ocharles.org.uk/Nix). - - - The *Journey into the Haskell NG infrastructure* series of postings - describe the new Haskell infrastructure in great detail: - - - [Part 1](https://nixos.org/nix-dev/2015-January/015591.html) - explains the differences between the old and the new code and gives - instructions how to migrate to the new setup. - - - [Part 2](https://nixos.org/nix-dev/2015-January/015608.html) - looks in-depth at how to tweak and configure your setup by means of - overrides. - - - [Part 3](https://nixos.org/nix-dev/2015-April/016912.html) - describes the infrastructure that keeps the Haskell package set in Nixpkgs - up-to-date. +The documentation for the Haskell infrastructure is published at +. The source code for that +site lives in the `doc/` sub-directory of the +[`cabal2nix` Git repository](https://github.com/NixOS/cabal2nix) +and changes can be submitted there. diff --git a/doc/languages-frameworks/vim.section.md b/doc/languages-frameworks/vim.section.md index 8e4826232e1..84ad567e8c2 100644 --- a/doc/languages-frameworks/vim.section.md +++ b/doc/languages-frameworks/vim.section.md @@ -265,6 +265,20 @@ To add a new plugin, run `./update.py --add "[owner]/[name]"`. **NOTE**: This sc Finally, there are some plugins that are also packaged in nodePackages because they have Javascript-related build steps, such as running webpack. Those plugins are not listed in `vim-plugin-names` or managed by `update.py` at all, and are included separately in `overrides.nix`. Currently, all these plugins are related to the `coc.nvim` ecosystem of Language Server Protocol integration with vim/neovim. +## Updating plugins in nixpkgs + +Run the update script with a GitHub API token that has at least `public_repo` access. Running the script without the token is likely to result in rate-limiting (429 errors). For steps on creating an API token, please refer to [GitHub's token documentation](https://docs.github.com/en/free-pro-team@latest/github/authenticating-to-github/creating-a-personal-access-token). + +```sh +GITHUB_API_TOKEN=my_token ./pkgs/misc/vim-plugins/update.py +``` + +Alternatively, set the number of processes to a lower count to avoid rate-limiting. + +```sh +./pkgs/misc/vim-plugins/update.py --proc 1 +``` + ## Important repositories - [vim-pi](https://bitbucket.org/vimcommunity/vim-pi) is a plugin repository diff --git a/doc/stdenv/stdenv.xml b/doc/stdenv/stdenv.xml index fc586b06fde..4c069b57edd 100644 --- a/doc/stdenv/stdenv.xml +++ b/doc/stdenv/stdenv.xml @@ -1833,6 +1833,19 @@ addEnvHooks "$hostOffset" myBashFunction + + + move-systemd-user-units.sh + + + + This setup hook moves any systemd user units installed in the lib + subdirectory into share. In addition, a link is provided from share to + lib for compatibility. This is needed for systemd to find user services + when installed into the user profile. + + + set-source-date-epoch-to-latest.sh diff --git a/lib/debug.nix b/lib/debug.nix index 2879f72ed2b..ea6aed60ab4 100644 --- a/lib/debug.nix +++ b/lib/debug.nix @@ -14,9 +14,25 @@ */ { lib }: let - inherit (builtins) trace isAttrs isList isInt - head substring attrNames; - inherit (lib) id elem isFunction; + inherit (lib) + isInt + attrNames + isList + isAttrs + substring + addErrorContext + attrValues + concatLists + concatStringsSep + const + elem + generators + head + id + isDerivation + isFunction + mapAttrs + trace; in rec { @@ -94,7 +110,7 @@ rec { trace: { a = { b = {…}; }; } => null */ - traceSeqN = depth: x: y: with lib; + traceSeqN = depth: x: y: let snip = v: if isList v then noQuotes "[…]" v else if isAttrs v then noQuotes "{…}" v else v; @@ -149,7 +165,7 @@ rec { */ runTests = # Tests to run - tests: lib.concatLists (lib.attrValues (lib.mapAttrs (name: test: + tests: concatLists (attrValues (mapAttrs (name: test: let testsToRun = if tests ? tests then tests.tests else []; in if (substring 0 4 name == "test" || elem name testsToRun) && ((testsToRun == []) || elem name tests.tests) @@ -176,9 +192,9 @@ rec { + "and will be removed in the next release. " + "Please use more specific concatenation " + "for your uses (`lib.concat(Map)StringsSep`)." ) - (lib.concatStringsSep "; " (map (x: "${x}=") (attrNames a))); + (concatStringsSep "; " (map (x: "${x}=") (attrNames a))); - showVal = with lib; + showVal = trace ( "Warning: `showVal` is deprecated " + "and will be removed in the next release, " + "please use `traceSeqN`" ) @@ -226,7 +242,7 @@ rec { trace ( "Warning: `addErrorContextToAttrs` is deprecated " + "and will be removed in the next release. " + "Please use `builtins.addErrorContext` directly." ) - (lib.mapAttrs (a: v: lib.addErrorContext "while evaluating ${a}" v) attrs); + (mapAttrs (a: v: addErrorContext "while evaluating ${a}" v) attrs); # example: (traceCallXml "myfun" id 3) will output something like # calling myfun arg 1: 3 result: 3 diff --git a/lib/default.nix b/lib/default.nix index 44076d29517..d2239d26ead 100644 --- a/lib/default.nix +++ b/lib/default.nix @@ -9,7 +9,7 @@ let lib = makeExtensible (self: let callLibs = file: import file { lib = self; }; - in with self; { + in { # often used, or depending on very little trivial = callLibs ./trivial.nix; @@ -54,7 +54,7 @@ let filesystem = callLibs ./filesystem.nix; # back-compat aliases - platforms = systems.doubles; + platforms = self.systems.doubles; # linux kernel configuration kernel = callLibs ./kernel.nix; @@ -63,14 +63,14 @@ let deepSeq elem elemAt filter genericClosure genList getAttr hasAttr head isAttrs isBool isInt isList isString length lessThan listToAttrs pathExists readFile replaceStrings seq - stringLength sub substring tail; - inherit (trivial) id const pipe concat or and bitAnd bitOr bitXor - bitNot boolToString mergeAttrs flip mapNullable inNixShell min max + stringLength sub substring tail trace; + inherit (self.trivial) id const pipe concat or and bitAnd bitOr bitXor + bitNot boolToString mergeAttrs flip mapNullable inNixShell isFloat min max importJSON importTOML warn info showWarnings nixpkgsVersion version mod compare splitByAndCompare functionArgs setFunctionArgs isFunction toHexString toBaseDigits; - inherit (fixedPoints) fix fix' converge extends composeExtensions + inherit (self.fixedPoints) fix fix' converge extends composeExtensions makeExtensible makeExtensibleWithCustomName; - inherit (attrsets) attrByPath hasAttrByPath setAttrByPath + inherit (self.attrsets) attrByPath hasAttrByPath setAttrByPath getAttrFromPath attrVals attrValues getAttrs catAttrs filterAttrs filterAttrsRecursive foldAttrs collect nameValuePair mapAttrs mapAttrs' mapAttrsToList mapAttrsRecursive mapAttrsRecursiveCond @@ -79,13 +79,13 @@ let recursiveUpdate matchAttrs overrideExisting getOutput getBin getLib getDev getMan chooseDevOutputs zipWithNames zip recurseIntoAttrs dontRecurseIntoAttrs; - inherit (lists) singleton forEach foldr fold foldl foldl' imap0 imap1 + inherit (self.lists) singleton forEach foldr fold foldl foldl' imap0 imap1 concatMap flatten remove findSingle findFirst any all count optional optionals toList range partition zipListsWith zipLists reverseList listDfs toposort sort naturalSort compareLists take drop sublist last init crossLists unique intersectLists subtractLists mutuallyExclusive groupBy groupBy'; - inherit (strings) concatStrings concatMapStrings concatImapStrings + inherit (self.strings) concatStrings concatMapStrings concatImapStrings intersperse concatStringsSep concatMapStringsSep concatImapStringsSep makeSearchPath makeSearchPathOutput makeLibraryPath makeBinPath optionalString @@ -97,19 +97,19 @@ let nameFromURL enableFeature enableFeatureAs withFeature withFeatureAs fixedWidthString fixedWidthNumber isStorePath toInt readPathsFromFile fileContents; - inherit (stringsWithDeps) textClosureList textClosureMap + inherit (self.stringsWithDeps) textClosureList textClosureMap noDepEntry fullDepEntry packEntry stringAfter; - inherit (customisation) overrideDerivation makeOverridable + inherit (self.customisation) overrideDerivation makeOverridable callPackageWith callPackagesWith extendDerivation hydraJob makeScope; - inherit (meta) addMetaAttrs dontDistribute setName updateName + inherit (self.meta) addMetaAttrs dontDistribute setName updateName appendToName mapDerivationAttrset setPrio lowPrio lowPrioSet hiPrio hiPrioSet; - inherit (sources) pathType pathIsDirectory cleanSourceFilter + inherit (self.sources) pathType pathIsDirectory cleanSourceFilter cleanSource sourceByRegex sourceFilesBySuffices commitIdFromGitRepo cleanSourceWith pathHasContext canCleanSource pathIsRegularFile pathIsGitRepo; - inherit (modules) evalModules unifyModuleSyntax + inherit (self.modules) evalModules unifyModuleSyntax applyIfFunction mergeModules mergeModules' mergeOptionDecls evalOptionValue mergeDefinitions pushDownProperties dischargeProperties filterOverrides @@ -119,21 +119,21 @@ let mkAliasAndWrapDefinitions fixMergeModules mkRemovedOptionModule mkRenamedOptionModule mkMergedOptionModule mkChangedOptionModule mkAliasOptionModule doRename; - inherit (options) isOption mkEnableOption mkSinkUndeclaredOptions + inherit (self.options) isOption mkEnableOption mkSinkUndeclaredOptions mergeDefaultOption mergeOneOption mergeEqualOption getValues getFiles optionAttrSetToDocList optionAttrSetToDocList' scrubOptionValue literalExample showOption showFiles unknownModule mkOption; - inherit (types) isType setType defaultTypeMerge defaultFunctor + inherit (self.types) isType setType defaultTypeMerge defaultFunctor isOptionType mkOptionType; - inherit (asserts) + inherit (self.asserts) assertMsg assertOneOf; - inherit (debug) addErrorContextToAttrs traceIf traceVal traceValFn + inherit (self.debug) addErrorContextToAttrs traceIf traceVal traceValFn traceXMLVal traceXMLValMarked traceSeq traceSeqN traceValSeq traceValSeqFn traceValSeqN traceValSeqNFn traceShowVal traceShowValMarked showVal traceCall traceCall2 traceCall3 traceValIfNot runTests testAllTrue traceCallXml attrNamesToStr; - inherit (misc) maybeEnv defaultMergeArg defaultMerge foldArgs + inherit (self.misc) maybeEnv defaultMergeArg defaultMerge foldArgs maybeAttrNullable maybeAttr ifEnable checkFlag getValue checkReqs uniqList uniqListExt condConcat lazyGenericClosure innerModifySumArgs modifySumArgs innerClosePropagation @@ -143,7 +143,7 @@ let mergeAttrsByFuncDefaultsClean mergeAttrBy fakeHash fakeSha256 fakeSha512 nixType imap; - inherit (versions) + inherit (self.versions) splitVersion; }); in lib diff --git a/lib/filesystem.nix b/lib/filesystem.nix index fc35a1a72c6..0a1275e547c 100644 --- a/lib/filesystem.nix +++ b/lib/filesystem.nix @@ -42,4 +42,16 @@ type = (builtins.readDir parent).${base} or null; in file == /. || type == "directory"; in go (if isDir then file else parent); + + + # listFilesRecursive: Path -> [ Path ] + # + # Given a directory, return a flattened list of all files within it recursively. + listFilesRecursive = dir: lib.flatten (lib.mapAttrsToList (name: type: + if type == "directory" then + lib.filesystem.listFilesRecursive (dir + "/${name}") + else + dir + "/${name}" + ) (builtins.readDir dir)); + } diff --git a/lib/lists.nix b/lib/lists.nix index f424946c72c..6c97e0686aa 100644 --- a/lib/lists.nix +++ b/lib/lists.nix @@ -1,9 +1,9 @@ # General list operations. { lib }: -with lib.trivial; let inherit (lib.strings) toInt; + inherit (lib.trivial) compare min; in rec { diff --git a/lib/modules.nix b/lib/modules.nix index df3a2ad17e5..d2d35dbaae5 100644 --- a/lib/modules.nix +++ b/lib/modules.nix @@ -1,12 +1,53 @@ { lib }: -with lib.lists; -with lib.strings; -with lib.trivial; -with lib.attrsets; -with lib.options; -with lib.debug; -with lib.types; +let + inherit (lib) + all + any + attrByPath + attrNames + catAttrs + concatLists + concatMap + count + elem + filter + findFirst + flip + foldl + foldl' + getAttrFromPath + head + id + imap1 + isAttrs + isBool + isFunction + isString + length + mapAttrs + mapAttrsToList + mapAttrsRecursiveCond + min + optional + optionalAttrs + optionalString + recursiveUpdate + reverseList sort + setAttrByPath + toList + types + warn + ; + inherit (lib.options) + isOption + mkOption + showDefs + showFiles + showOption + unknownModule + ; +in rec { @@ -616,7 +657,7 @@ rec { fixupOptionType = loc: opt: let options = opt.options or - (throw "Option `${showOption loc'}' has type optionSet but has no option attribute, in ${showFiles opt.declarations}."); + (throw "Option `${showOption loc}' has type optionSet but has no option attribute, in ${showFiles opt.declarations}."); f = tp: let optionSetIn = type: (tp.name == type) && (tp.functor.wrapped.name == "optionSet"); in @@ -719,7 +760,7 @@ rec { mkRemovedOptionModule [ "boot" "loader" "grub" "bootDevice" ] "" - causes a warning if the user defines boot.loader.grub.bootDevice. + causes a assertion if the user defines boot.loader.grub.bootDevice. replacementInstructions is a string that provides instructions on how to achieve the same functionality without the removed option, diff --git a/lib/options.nix b/lib/options.nix index 5b7482c8093..87cd8b79796 100644 --- a/lib/options.nix +++ b/lib/options.nix @@ -1,11 +1,40 @@ # Nixpkgs/NixOS option handling. { lib }: -with lib.trivial; -with lib.lists; -with lib.attrsets; -with lib.strings; - +let + inherit (lib) + all + collect + concatLists + concatMap + elemAt + filter + foldl' + head + isAttrs + isBool + isDerivation + isFunction + isInt + isList + isString + length + mapAttrs + optional + optionals + take + ; + inherit (lib.attrsets) + optionalAttrs + ; + inherit (lib.strings) + concatMapStrings + concatStringsSep + ; + inherit (lib.types) + mkOptionType + ; +in rec { /* Returns true when the given argument is an option @@ -110,7 +139,7 @@ rec { # Return early if we only have one element # This also makes it work for functions, because the foldl' below would try # to compare the first element with itself, which is false for functions - else if length defs == 1 then (elemAt defs 0).value + else if length defs == 1 then (head defs).value else (foldl' (first: def: if def.value != first.value then throw "The option `${showOption loc}' has conflicting definition values:${showDefs [ first def ]}" diff --git a/lib/sources.nix b/lib/sources.nix index 776fcc32052..702a0ef8892 100644 --- a/lib/sources.nix +++ b/lib/sources.nix @@ -1,16 +1,33 @@ # Functions for copying sources to the Nix store. { lib }: +let + inherit (builtins) + hasContext + match + readDir + storeDir + tryEval + ; + inherit (lib) + filter + getAttr + isString + pathExists + readFile + split + ; +in rec { # Returns the type of a path: regular (for file), symlink, or directory - pathType = p: with builtins; getAttr (baseNameOf p) (readDir (dirOf p)); + pathType = p: getAttr (baseNameOf p) (readDir (dirOf p)); # Returns true if the path exists and is a directory, false otherwise - pathIsDirectory = p: if builtins.pathExists p then (pathType p) == "directory" else false; + pathIsDirectory = p: if pathExists p then (pathType p) == "directory" else false; # Returns true if the path exists and is a regular file, false otherwise - pathIsRegularFile = p: if builtins.pathExists p then (pathType p) == "regular" else false; + pathIsRegularFile = p: if pathExists p then (pathType p) == "regular" else false; # Bring in a path as a source, filtering out all Subversion and CVS # directories, as well as backup files (*~). @@ -19,8 +36,8 @@ rec { (baseName == ".git" || type == "directory" && (baseName == ".svn" || baseName == "CVS" || baseName == ".hg")) || # Filter out editor backup / swap files. lib.hasSuffix "~" baseName || - builtins.match "^\\.sw[a-z]$" baseName != null || - builtins.match "^\\..*\\.sw[a-z]$" baseName != null || + match "^\\.sw[a-z]$" baseName != null || + match "^\\..*\\.sw[a-z]$" baseName != null || # Filter out generates files. lib.hasSuffix ".o" baseName || @@ -89,7 +106,7 @@ rec { in lib.cleanSourceWith { filter = (path: type: let relPath = lib.removePrefix (toString origSrc + "/") (toString path); - in lib.any (re: builtins.match re relPath != null) regexes); + in lib.any (re: match re relPath != null) regexes); inherit src; }; @@ -102,13 +119,12 @@ rec { in type == "directory" || lib.any (ext: lib.hasSuffix ext base) exts; in cleanSourceWith { inherit filter; src = path; }; - pathIsGitRepo = path: (builtins.tryEval (commitIdFromGitRepo path)).success; + pathIsGitRepo = path: (tryEval (commitIdFromGitRepo path)).success; # Get the commit id of a git repo # Example: commitIdFromGitRepo commitIdFromGitRepo = let readCommitFromFile = file: path: - with builtins; let fileName = toString path + "/" + file; packedRefsName = toString path + "/packed-refs"; absolutePath = base: path: @@ -145,11 +161,11 @@ rec { # packed-refs file, so we have to grep through it: then let fileContent = readFile packedRefsName; - matchRef = builtins.match "([a-z0-9]+) ${file}"; - isRef = s: builtins.isString s && (matchRef s) != null; + matchRef = match "([a-z0-9]+) ${file}"; + isRef = s: isString s && (matchRef s) != null; # there is a bug in libstdc++ leading to stackoverflow for long strings: # https://github.com/NixOS/nix/issues/2147#issuecomment-659868795 - refs = builtins.filter isRef (builtins.split "\n" fileContent); + refs = filter isRef (split "\n" fileContent); in if refs == [] then throw ("Could not find " + file + " in " + packedRefsName) else lib.head (matchRef (lib.head refs)) @@ -157,7 +173,7 @@ rec { else throw ("Not a .git directory: " + path); in readCommitFromFile "HEAD"; - pathHasContext = builtins.hasContext or (lib.hasPrefix builtins.storeDir); + pathHasContext = builtins.hasContext or (lib.hasPrefix storeDir); canCleanSource = src: src ? _isLibCleanSourceWith || !(pathHasContext (toString src)); } diff --git a/lib/strings-with-deps.nix b/lib/strings-with-deps.nix index e3336983428..7b88b018da5 100644 --- a/lib/strings-with-deps.nix +++ b/lib/strings-with-deps.nix @@ -41,10 +41,15 @@ Usage: [1] maybe this behaviour should be removed to keep things simple (?) */ -with lib.lists; -with lib.attrsets; -with lib.strings; - +let + inherit (lib) + concatStringsSep + head + isAttrs + listToAttrs + tail + ; +in rec { /* !!! The interface of this function is kind of messed up, since diff --git a/lib/strings.nix b/lib/strings.nix index 9fa9f023561..f62ff6679ef 100644 --- a/lib/strings.nix +++ b/lib/strings.nix @@ -8,7 +8,29 @@ in rec { - inherit (builtins) stringLength substring head tail isString replaceStrings; + inherit (builtins) + compareVersions + elem + elemAt + filter + fromJSON + head + isInt + isList + isString + match + parseDrvName + readFile + replaceStrings + split + storeDir + stringLength + substring + tail + toJSON + typeOf + unsafeDiscardStringContext + ; /* Concatenate a list of strings. @@ -120,7 +142,7 @@ rec { subDir: # List of base paths paths: - concatStringsSep ":" (map (path: path + "/" + subDir) (builtins.filter (x: x != null) paths)); + concatStringsSep ":" (map (path: path + "/" + subDir) (filter (x: x != null) paths)); /* Construct a Unix-style search path by appending the given `subDir` to the specified `output` of each of the packages. If no @@ -313,7 +335,17 @@ rec { escapeNixString "hello\${}\n" => "\"hello\\\${}\\n\"" */ - escapeNixString = s: escape ["$"] (builtins.toJSON s); + escapeNixString = s: escape ["$"] (toJSON s); + + /* Turn a string into an exact regular expression + + Type: string -> string + + Example: + escapeRegex "[^a-z]*" + => "\\[\\^a-z]\\*" + */ + escapeRegex = escape (stringToCharacters "\\[{()^$?*+|."); /* Quotes a string if it can't be used as an identifier directly. @@ -327,7 +359,7 @@ rec { */ escapeNixIdentifier = s: # Regex from https://github.com/NixOS/nix/blob/d048577909e383439c2549e849c5c2f2016c997e/src/libexpr/lexer.l#L91 - if builtins.match "[a-zA-Z_][a-zA-Z0-9_'-]*" s != null + if match "[a-zA-Z_][a-zA-Z0-9_'-]*" s != null then s else escapeNixString s; # Obsolete - use replaceStrings instead. @@ -386,8 +418,6 @@ rec { /* Cut a string with a separator and produces a list of strings which were separated by this separator. - NOTE: this function is not performant and should never be used. - Example: splitString "." "foo.bar.baz" => [ "foo" "bar" "baz" ] @@ -396,26 +426,11 @@ rec { */ splitString = _sep: _s: let - sep = addContextFrom _s _sep; - s = addContextFrom _sep _s; - sepLen = stringLength sep; - sLen = stringLength s; - lastSearch = sLen - sepLen; - startWithSep = startAt: - substring startAt sepLen s == sep; - - recurse = index: startAt: - let cutUntil = i: [(substring startAt (i - startAt) s)]; in - if index <= lastSearch then - if startWithSep index then - let restartAt = index + sepLen; in - cutUntil index ++ recurse restartAt restartAt - else - recurse (index + 1) startAt - else - cutUntil sLen; + sep = builtins.unsafeDiscardStringContext _sep; + s = builtins.unsafeDiscardStringContext _s; + splits = builtins.filter builtins.isString (builtins.split (escapeRegex sep) s); in - recurse 0 0; + map (v: addContextFrom _sep (addContextFrom _s v)) splits; /* Return a string without the specified prefix, if the prefix matches. @@ -473,7 +488,7 @@ rec { versionOlder "1.1" "1.1" => false */ - versionOlder = v1: v2: builtins.compareVersions v2 v1 == 1; + versionOlder = v1: v2: compareVersions v2 v1 == 1; /* Return true if string v1 denotes a version equal to or newer than v2. @@ -499,7 +514,7 @@ rec { */ getName = x: let - parse = drv: (builtins.parseDrvName drv).name; + parse = drv: (parseDrvName drv).name; in if isString x then parse x else x.pname or (parse x.name); @@ -516,7 +531,7 @@ rec { */ getVersion = x: let - parse = drv: (builtins.parseDrvName drv).version; + parse = drv: (parseDrvName drv).version; in if isString x then parse x else x.version or (parse x.name); @@ -534,7 +549,7 @@ rec { let components = splitString "/" url; filename = lib.last components; - name = builtins.head (splitString sep filename); + name = head (splitString sep filename); in assert name != filename; name; /* Create an --{enable,disable}- string that can be passed to @@ -624,14 +639,14 @@ rec { */ floatToString = float: let result = toString float; - precise = float == builtins.fromJSON result; + precise = float == fromJSON result; in if precise then result else lib.warn "Imprecise conversion from float to string ${result}" result; /* Check whether a value can be coerced to a string */ isCoercibleToString = x: - builtins.elem (builtins.typeOf x) [ "path" "string" "null" "int" "float" "bool" ] || - (builtins.isList x && lib.all isCoercibleToString x) || + elem (typeOf x) [ "path" "string" "null" "int" "float" "bool" ] || + (isList x && lib.all isCoercibleToString x) || x ? outPath || x ? __toString; @@ -650,8 +665,8 @@ rec { isStorePath = x: if isCoercibleToString x then let str = toString x; in - builtins.substring 0 1 str == "/" - && dirOf str == builtins.storeDir + substring 0 1 str == "/" + && dirOf str == storeDir else false; @@ -669,8 +684,8 @@ rec { */ # Obviously, it is a bit hacky to use fromJSON this way. toInt = str: - let may_be_int = builtins.fromJSON str; in - if builtins.isInt may_be_int + let may_be_int = fromJSON str; in + if isInt may_be_int then may_be_int else throw "Could not convert ${str} to int."; @@ -692,10 +707,10 @@ rec { readPathsFromFile = lib.warn "lib.readPathsFromFile is deprecated, use a list instead" (rootPath: file: let - lines = lib.splitString "\n" (builtins.readFile file); + lines = lib.splitString "\n" (readFile file); removeComments = lib.filter (line: line != "" && !(lib.hasPrefix "#" line)); relativePaths = removeComments lines; - absolutePaths = builtins.map (path: rootPath + "/${path}") relativePaths; + absolutePaths = map (path: rootPath + "/${path}") relativePaths; in absolutePaths); @@ -709,7 +724,7 @@ rec { fileContents ./version => "1.0" */ - fileContents = file: removeSuffix "\n" (builtins.readFile file); + fileContents = file: removeSuffix "\n" (readFile file); /* Creates a valid derivation name from a potentially invalid one. @@ -727,13 +742,13 @@ rec { sanitizeDerivationName = string: lib.pipe string [ # Get rid of string context. This is safe under the assumption that the # resulting string is only used as a derivation name - builtins.unsafeDiscardStringContext + unsafeDiscardStringContext # Strip all leading "." - (x: builtins.elemAt (builtins.match "\\.*(.*)" x) 0) + (x: elemAt (match "\\.*(.*)" x) 0) # Split out all invalid characters # https://github.com/NixOS/nix/blob/2.3.2/src/libstore/store-api.cc#L85-L112 # https://github.com/NixOS/nix/blob/2242be83c61788b9c0736a92bb0b5c7bbfc40803/nix-rust/src/store/path.rs#L100-L125 - (builtins.split "[^[:alnum:]+._?=-]+") + (split "[^[:alnum:]+._?=-]+") # Replace invalid character ranges with a "-" (concatMapStrings (s: if lib.isList s then "-" else s)) # Limit to 211 characters (minus 4 chars for ".drv") diff --git a/lib/systems/examples.nix b/lib/systems/examples.nix index 5403f73405c..87c05a0b052 100644 --- a/lib/systems/examples.nix +++ b/lib/systems/examples.nix @@ -179,8 +179,8 @@ rec { iphone64 = { config = "aarch64-apple-ios"; # config = "aarch64-apple-darwin14"; - sdkVer = "12.4"; - xcodeVer = "10.3"; + sdkVer = "13.2"; + xcodeVer = "11.3.1"; xcodePlatform = "iPhoneOS"; useiOSPrebuilt = true; platform = {}; @@ -189,8 +189,8 @@ rec { iphone32 = { config = "armv7a-apple-ios"; # config = "arm-apple-darwin10"; - sdkVer = "12.4"; - xcodeVer = "10.3"; + sdkVer = "13.2"; + xcodeVer = "11.3.1"; xcodePlatform = "iPhoneOS"; useiOSPrebuilt = true; platform = {}; @@ -199,8 +199,8 @@ rec { iphone64-simulator = { config = "x86_64-apple-ios"; # config = "x86_64-apple-darwin14"; - sdkVer = "12.4"; - xcodeVer = "10.3"; + sdkVer = "13.2"; + xcodeVer = "11.3.1"; xcodePlatform = "iPhoneSimulator"; useiOSPrebuilt = true; platform = {}; @@ -209,8 +209,8 @@ rec { iphone32-simulator = { config = "i686-apple-ios"; # config = "i386-apple-darwin11"; - sdkVer = "12.4"; - xcodeVer = "10.3"; + sdkVer = "13.2"; + xcodeVer = "11.3.1"; xcodePlatform = "iPhoneSimulator"; useiOSPrebuilt = true; platform = {}; diff --git a/lib/tests/misc.nix b/lib/tests/misc.nix index 3a6db53c276..6175f15819a 100644 --- a/lib/tests/misc.nix +++ b/lib/tests/misc.nix @@ -154,6 +154,20 @@ runTests { expected = [ "2001" "db8" "0" "0042" "" "8a2e" "370" "" ]; }; + testSplitStringsRegex = { + expr = strings.splitString "\\[{}]()^$?*+|." "A\\[{}]()^$?*+|.B"; + expected = [ "A" "B" ]; + }; + + testSplitStringsDerivation = { + expr = take 3 (strings.splitString "/" (derivation { + name = "name"; + builder = "builder"; + system = "system"; + })); + expected = ["" "nix" "store"]; + }; + testSplitVersionSingle = { expr = versions.splitVersion "1"; expected = [ "1" ]; diff --git a/lib/types.nix b/lib/types.nix index e9e45dc25c7..ee891f8231b 100644 --- a/lib/types.nix +++ b/lib/types.nix @@ -1,12 +1,65 @@ # Definitions related to run-time type checking. Used in particular # to type-check NixOS configurations. { lib }: -with lib.lists; -with lib.attrsets; -with lib.options; -with lib.trivial; -with lib.strings; + let + inherit (lib) + elem + flip + functionArgs + isAttrs + isBool + isDerivation + isFloat + isFunction + isInt + isList + isString + isStorePath + setFunctionArgs + toDerivation + toList + ; + inherit (lib.lists) + all + concatLists + count + elemAt + filter + foldl' + head + imap1 + last + length + tail + unique + ; + inherit (lib.attrsets) + attrNames + filterAttrs + hasAttr + mapAttrs + optionalAttrs + zipAttrsWith + ; + inherit (lib.options) + getFiles + getValues + mergeDefaultOption + mergeEqualOption + mergeOneOption + showFiles + showOption + ; + inherit (lib.strings) + concatMapStringsSep + concatStringsSep + escapeNixString + isCoercibleToString + ; + inherit (lib.trivial) + boolToString + ; inherit (lib.modules) mergeDefinitions; outer_types = @@ -270,7 +323,7 @@ rec { name = "attrs"; description = "attribute set"; check = isAttrs; - merge = loc: foldl' (res: def: mergeAttrs res def.value) {}; + merge = loc: foldl' (res: def: res // def.value) {}; emptyValue = { value = {}; }; }; @@ -499,7 +552,7 @@ rec { show = v: if builtins.isString v then ''"${v}"'' else if builtins.isInt v then builtins.toString v - else if builtins.isBool v then if v then "true" else "false" + else if builtins.isBool v then boolToString v else ''<${builtins.typeOf v}>''; in mkOptionType rec { diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix index 5500d5f49dc..d81993d5966 100644 --- a/maintainers/maintainer-list.nix +++ b/maintainers/maintainer-list.nix @@ -520,6 +520,12 @@ githubId = 293191; name = "Andres Loeh"; }; + andresilva = { + email = "andre.beat@gmail.com"; + github = "andresilva"; + githubId = 123550; + name = "André Silva"; + }; andrestylianos = { email = "andre.stylianos@gmail.com"; github = "andrestylianos"; @@ -1297,10 +1303,12 @@ name = "Vladimir Serov"; keys = [ # compare with https://keybase.io/cab404 - { longkeyid = "1BB96810926F4E715DEF567E6BA7C26C3FDF7BB3"; + { + longkeyid = "1BB96810926F4E715DEF567E6BA7C26C3FDF7BB3"; fingerprint = "rsa3072/0xCBDECF658C38079E"; } - { longkeyid = "1EBC648C64D6045463013B3EB7EFFC271D55DB8A"; + { + longkeyid = "1EBC648C64D6045463013B3EB7EFFC271D55DB8A"; fingerprint = "ed25519/0xB7EFFC271D55DB8A"; } ]; @@ -1425,10 +1433,12 @@ githubId = 2054509; name = "Constantine Evans"; keys = [ - { longkeyid = "rsa4096/0xB67DB1D20A93A9F9"; + { + longkeyid = "rsa4096/0xB67DB1D20A93A9F9"; fingerprint = "32B1 6EE7 DBA5 16DE 526E 4C5A B67D B1D2 0A93 A9F9"; } - { longkeyid = "rsa4096/0x1A1D58B86AE2AABD"; + { + longkeyid = "rsa4096/0x1A1D58B86AE2AABD"; fingerprint = "669C 1D24 5A87 DB34 6BE4 3216 1A1D 58B8 6AE2 AABD"; } ]; @@ -2163,6 +2173,12 @@ githubId = 8852888; name = "David Izquierdo"; }; + djanatyn = { + email = "djanatyn@gmail.com"; + github = "djanatyn"; + githubId = 523628; + name = "Jonathan Strickland"; + }; Dje4321 = { email = "dje4321@gmail.com"; github = "dje4321"; @@ -2729,6 +2745,12 @@ githubId = 1847524; name = "Evan Stoll"; }; + evax = { + email = "nixos@evax.fr"; + github = "evax"; + githubId = 599997; + name = "evax"; + }; evck = { email = "eric@evenchick.com"; github = "ericevenchick"; @@ -3425,6 +3447,12 @@ githubId = 2405974; name = "Sébastian Méric de Bellefon"; }; + henrikolsson = { + email = "henrik@fixme.se"; + github = "henrikolsson"; + githubId = 982322; + name = "Henrik Olsson"; + }; henrytill = { email = "henrytill@gmail.com"; github = "henrytill"; @@ -3933,6 +3961,16 @@ githubId = 2736480; name = "Johannes Frankenau"; }; + jfroche = { + name = "Jean-François Roche"; + email = "jfroche@pyxel.be"; + github = "jfroche"; + githubId = 207369; + keys = [{ + longkeyid = "dsa1024/0xD1D09DE169EA19A0"; + fingerprint = "7EB1 C02A B62B B464 6D7C E4AE D1D0 9DE1 69EA 19A0"; + }]; + }; jgeerds = { email = "jascha@geerds.org"; github = "jgeerds"; @@ -4234,6 +4272,12 @@ githubId = 1786438; name = "Jonas Schievink"; }; + jshcmpbll = { + email = "me@joshuadcampbell.com"; + github = "jshcmpbll"; + githubId = 16374374; + name = "Joshua Campbell"; + }; jtcoolen = { email = "jtcoolen@pm.me"; name = "Julien Coolen"; @@ -4333,7 +4377,7 @@ name = "Jeff Zellner"; }; kaction = { - name = "Dmitry Bogatov"; + name = "Dmitry Bogatov"; email = "KAction@disroot.org"; github = "kaction"; githubId = 44864956; @@ -5645,12 +5689,6 @@ githubId = 1387206; name = "Mike Sperber"; }; - mildlyincompetent = { - email = "nix@kch.dev"; - github = "mildlyincompetent"; - githubId = 19479662; - name = "Kajetan Champlewski"; - }; millerjason = { email = "mailings-github@millerjason.com"; github = "millerjason"; @@ -5985,6 +6023,12 @@ githubId = 788953; name = "Matthijs Steen"; }; + mstrangfeld = { + email = "marvin@strangfeld.io"; + github = "mstrangfeld"; + githubId = 36842980; + name = "Marvin Strangfeld"; + }; mt-caret = { email = "mtakeda.enigsol@gmail.com"; github = "mt-caret"; @@ -6389,6 +6433,12 @@ githubId = 4728903; name = "Owen Lynch"; }; + omasanori = { + email = "167209+omasanori@users.noreply.github.com"; + github = "omasanori"; + githubId = 167209; + name = "Masanori Ogino"; + }; omnipotententity = { email = "omnipotententity@gmail.com"; github = "omnipotententity"; @@ -6954,7 +7004,7 @@ purcell = { email = "steve@sanityinc.com"; github = "purcell"; - githubId = 5636; + githubId = 5636; name = "Steve Purcell"; }; puzzlewolf = { @@ -7223,10 +7273,12 @@ github = "rissson"; githubId = 18313093; keys = [ - { longkeyid = "rsa4096/0xF6FD87B15C263EC9"; + { + longkeyid = "rsa4096/0xF6FD87B15C263EC9"; fingerprint = "8A0E 6A7C 08AB B9DE 67DE 2A13 F6FD 87B1 5C26 3EC9"; } - { longkeyid = "ed25519/0xBBB7A6801DF1E03F"; + { + longkeyid = "ed25519/0xBBB7A6801DF1E03F"; fingerprint = "C0A7 A9BB 115B C857 4D75 EA99 BBB7 A680 1DF1 E03F"; } ]; @@ -7401,6 +7453,12 @@ githubId = 1387224; name = "Richard Szibele"; }; + rtburns-jpl = { + email = "rtburns@jpl.nasa.gov"; + github = "rtburns-jpl"; + githubId = 47790121; + name = "Ryan Burns"; + }; rtreffer = { email = "treffer+nixos@measite.de"; github = "rtreffer"; @@ -8300,7 +8358,7 @@ name = "Szczyp"; }; szlend = { - email = "pub+nix@zlender.si"; + email = "pub.nix@zlender.si"; github = "szlend"; githubId = 7301807; name = "Simon Žlender"; @@ -9186,6 +9244,12 @@ email = "kirill.wedens@gmail.com"; name = "wedens"; }; + wheelsandmetal = { + email = "jakob@schmutz.co.uk"; + github = "wheelsandmetal"; + githubId = 13031455; + name = "Jakob Schmutz"; + }; WhittlesJr = { email = "alex.joseph.whitt@gmail.com"; github = "WhittlesJr"; @@ -9254,6 +9318,12 @@ githubId = 1322287; name = "William O'Hanley"; }; + wolfangaukang = { + email = "liquid.query960@4wrd.cc"; + github = "wolfangaukang"; + githubId = 8378365; + name = "P. R. d. O."; + }; womfoo = { email = "kranium@gikos.net"; github = "womfoo"; @@ -9496,6 +9566,12 @@ githubId = 568532; name = "Christian Zagrodnick"; }; + zakame = { + email = "zakame@zakame.net"; + github = "zakame"; + githubId = 110625; + name = "Zak B. Elep"; + }; zalakain = { email = "ping@umazalakain.info"; github = "umazalakain"; @@ -9582,6 +9658,12 @@ githubId = 1069303; name = "Kim Simmons"; }; + zopieux = { + email = "zopieux@gmail.com"; + github = "zopieux"; + githubId = 81353; + name = "Alexandre Macabies"; + }; zowoq = { email = "59103226+zowoq@users.noreply.github.com"; github = "zowoq"; @@ -9673,7 +9755,7 @@ name = "Asad Saeeduddin"; }; ngerstle = { - name = "Nicholas Gerstle"; + name = "Nicholas Gerstle"; email = "ngerstle@gmail.com"; github = "ngerstle"; githubId = 1023752; @@ -9798,4 +9880,10 @@ github = "hloeffler"; githubId = 6627191; }; + wilsonehusin = { + name = "Wilson E. Husin"; + email = "wilsonehusin@gmail.com"; + github = "wilsonehusin"; + githubId = 14004487; + }; } diff --git a/maintainers/scripts/hydra-eval-failures.py b/maintainers/scripts/hydra-eval-failures.py index 0f738c5427b..b7518b12857 100755 --- a/maintainers/scripts/hydra-eval-failures.py +++ b/maintainers/scripts/hydra-eval-failures.py @@ -1,5 +1,5 @@ #!/usr/bin/env nix-shell -#!nix-shell -i python3 -p 'python3.withPackages(ps: with ps; [ requests pyquery click ])' +#!nix-shell -i python3 -p "python3.withPackages(ps: with ps; [ requests pyquery click ])" # To use, just execute this script with --help to display help. diff --git a/nixos/doc/manual/README b/nixos/doc/manual/README index 587f6275197..120c127d7af 100644 --- a/nixos/doc/manual/README +++ b/nixos/doc/manual/README @@ -1,12 +1,3 @@ -To build the manual, you need Nix installed on your system (no need -for NixOS). To install Nix, follow the instructions at +Moved to: ./contributing-to-this-manual.xml. Link: - https://nixos.org/nix/download.html - -When you have Nix on your system, in the root directory of the project -(i.e., `nixpkgs`), run: - - nix-build nixos/release.nix -A manual.x86_64-linux - -When this command successfully finishes, it will tell you where the -manual got generated. +https://nixos.org/manual/nixos/unstable/#chap-contributing diff --git a/nixos/doc/manual/configuration/user-mgmt.xml b/nixos/doc/manual/configuration/user-mgmt.xml index cbec83814c9..e83e7b75ef5 100644 --- a/nixos/doc/manual/configuration/user-mgmt.xml +++ b/nixos/doc/manual/configuration/user-mgmt.xml @@ -38,7 +38,7 @@ assigned by setting the user's hashedPassword option. A hashed password can be generated using mkpasswd -m - sha-512 after installing the mkpasswd package. + sha-512. A user ID (uid) is assigned automatically. You can also specify a uid diff --git a/nixos/doc/manual/contributing-to-this-manual.xml b/nixos/doc/manual/contributing-to-this-manual.xml new file mode 100644 index 00000000000..9820e75fc33 --- /dev/null +++ b/nixos/doc/manual/contributing-to-this-manual.xml @@ -0,0 +1,22 @@ + + Contributing to this documentation + + The DocBook sources of NixOS' manual are in the +nixos/doc/manual subdirectory of the Nixpkgs repository. + + + You can quickly check your edits with the following: + + +$ cd /path/to/nixpkgs/nixos/doc/manual +$ nix-build nixos/release.nix -A manual.x86_64-linux + + + If the build succeeds, the manual will be in + ./result/share/doc/nixos/index.html. + + diff --git a/nixos/doc/manual/development/meta-attributes.xml b/nixos/doc/manual/development/meta-attributes.xml index c626ef30e9d..c40be0a50c3 100644 --- a/nixos/doc/manual/development/meta-attributes.xml +++ b/nixos/doc/manual/development/meta-attributes.xml @@ -57,7 +57,7 @@ linkend="ch-configuration"/>. Changes to a module documentation have to be checked to not break building the NixOS manual: -$ nix-build nixos/release.nix -A manual +$ nix-build nixos/release.nix -A manual.x86_64-linux diff --git a/nixos/doc/manual/development/running-nixos-tests-interactively.xml b/nixos/doc/manual/development/running-nixos-tests-interactively.xml index a11a9382764..a6044d5f89e 100644 --- a/nixos/doc/manual/development/running-nixos-tests-interactively.xml +++ b/nixos/doc/manual/development/running-nixos-tests-interactively.xml @@ -9,7 +9,7 @@ The test itself can be run interactively. This is particularly useful when developing or debugging a test: -$ nix-build nixos/tests/login.nix -A driver +$ nix-build nixos/tests/login.nix -A driverInteractive $ ./result/bin/nixos-test-driver starting VDE switch for network 1 > @@ -30,7 +30,7 @@ starting VDE switch for network 1 To just start and experiment with the VMs, run: -$ nix-build nixos/tests/login.nix -A driver +$ nix-build nixos/tests/login.nix -A driverInteractive $ ./result/bin/nixos-run-vms The script nixos-run-vms starts the virtual machines diff --git a/nixos/doc/manual/installation/upgrading.xml b/nixos/doc/manual/installation/upgrading.xml index 08780051d5f..15ba5db9a37 100644 --- a/nixos/doc/manual/installation/upgrading.xml +++ b/nixos/doc/manual/installation/upgrading.xml @@ -14,7 +14,7 @@ Stable channels, such as nixos-20.03. + xlink:href="https://nixos.org/channels/nixos-20.09">nixos-20.09. These only get conservative bug fixes and package upgrades. For instance, a channel update may cause the Linux kernel on your system to be upgraded from 4.19.34 to 4.19.38 (a minor bug fix), but not from @@ -38,7 +38,7 @@ Small channels, such as nixos-20.03-small + xlink:href="https://nixos.org/channels/nixos-20.09-small">nixos-20.09-small or nixos-unstable-small. @@ -63,8 +63,8 @@ When you first install NixOS, you’re automatically subscribed to the NixOS channel that corresponds to your installation source. For instance, if you - installed from a 20.03 ISO, you will be subscribed to the - nixos-20.03 channel. To see which NixOS channel you’re + installed from a 20.09 ISO, you will be subscribed to the + nixos-20.09 channel. To see which NixOS channel you’re subscribed to, run the following as root: # nix-channel --list | grep nixos @@ -75,13 +75,13 @@ nixos https://nixos.org/channels/nixos-unstable # nix-channel --add https://nixos.org/channels/channel-name nixos (Be sure to include the nixos parameter at the end.) For - instance, to use the NixOS 20.03 stable channel: + instance, to use the NixOS 20.09 stable channel: -# nix-channel --add https://nixos.org/channels/nixos-20.03 nixos +# nix-channel --add https://nixos.org/channels/nixos-20.09 nixos If you have a server, you may want to use the “small” channel instead: -# nix-channel --add https://nixos.org/channels/nixos-20.03-small nixos +# nix-channel --add https://nixos.org/channels/nixos-20.09-small nixos And if you want to live on the bleeding edge: @@ -132,7 +132,7 @@ nixos https://nixos.org/channels/nixos-unstable kernel, initrd or kernel modules. You can also specify a channel explicitly, e.g. - = https://nixos.org/channels/nixos-20.03; + = https://nixos.org/channels/nixos-20.09; diff --git a/nixos/doc/manual/manual.xml b/nixos/doc/manual/manual.xml index 18a67a2dd94..db9e7313831 100644 --- a/nixos/doc/manual/manual.xml +++ b/nixos/doc/manual/manual.xml @@ -19,5 +19,6 @@ + diff --git a/nixos/doc/manual/release-notes/rl-2009.xml b/nixos/doc/manual/release-notes/rl-2009.xml index d9ff51ae3df..01f113198eb 100644 --- a/nixos/doc/manual/release-notes/rl-2009.xml +++ b/nixos/doc/manual/release-notes/rl-2009.xml @@ -3,8 +3,11 @@ xmlns:xi="http://www.w3.org/2001/XInclude" version="5.0" xml:id="sec-release-20.09"> - Release 20.09 (“Nightingale”, 2020.09/??) + Release 20.09 (“Nightingale”, 2020.10/27) + + Support is planned until the end of April 2021, handing over to 21.03. +
Highlights - In addition to numerous new and upgraded packages, this release has the + In addition to 7349 new, 14442 updated, and 8181 removed packages, this release has the following highlights: - Support is planned until the end of April 2021, handing over to 21.03. + Core version changes: - - - GNOME desktop environment was upgraded to 3.36, see its release notes. - - - - The Cinnamon desktop environment (v4.6) has been added. services.xserver.desktopManager.cinnamon.enable = true; to try it out! - Remember that, with any new feature it's possible you could run into issues, so please send all support requests to github.com/NixOS/nixpkgs to notify the maintainers. - + + + + gcc: 9.2.0 -> 9.3.0 + + + + + glibc: 2.30 -> 2.31 + + + + + linux: still defaults to 5.4.x, all supported kernels available + + + + + mesa: 19.3.5 -> 20.1.7 + + + - Quickly configure a complete, private, self-hosted video - conferencing solution with the new Jitsi Meet module. + Desktop Environments: + + + + plasma5: 5.17.5 -> 5.18.5 + + + + + kdeApplications: 19.12.3 -> 20.08.1 + + + + + gnome3: 3.34 -> 3.36, see its release notes + + + + + cinnamon: added at 4.6 + + + + + NixOS now distributes an official GNOME ISO + + + + + + + + Programming Languages and Frameworks: + + + + + + Agda ecosystem was heavily reworked (see more details below) + + + + + PHP now defaults to PHP 7.4, updated from 7.3 + + + + + PHP 7.2 is no longer supported due to upstream not supporting this version for the entire lifecycle of the 20.09 release + + + + + Python 3 now defaults to Python 3.8 instead of 3.7 + + + + + Python 3.5 reached its upstream EOL at the end of September 2020: it + has been removed from the list of available packages + + + + + + + + Databases and Service Monitoring: + + + + + MariaDB has been updated to 10.4, MariaDB Galera to 26.4. Please read the related upgrade instructions under backwards incompatibilities before upgrading. + + + + + Zabbix now defaults to 5.0, updated from 4.4. Please read related sections under backwards compatibilities before upgrading. + + + + + + + + Major module changes: + + + + + Quickly configure a complete, private, self-hosted video + conferencing solution with the new Jitsi Meet module. + + + + + Two new options, authorizedKeysCommand + and authorizedKeysCommandUser, have + been added to the openssh module. If you have AuthorizedKeysCommand + in your services.openssh.extraConfig you should + make use of these new options instead. + + + + + There is a new module for Podman (virtualisation.podman), a drop-in replacement for the Docker command line. + + + + + The new virtualisation.containers module manages configuration shared by the CRI-O and Podman modules. + + + + + Declarative Docker containers are renamed from docker-containers to virtualisation.oci-containers.containers. + This is to make it possible to use podman instead of docker. + + + + + The new option documentation.man.generateCaches + has been added to automatically generate the man-db caches, which are needed by utilities + like whatis and apropos. The caches are generated during the build of + the NixOS configuration: since this can be expensive when a large number of packages are installed, the + feature is disabled by default. + + + + + services.postfix.sslCACert was replaced by services.postfix.tlsTrustedAuthorities which now defaults to system certificate authorities. + + + + + The various documented workarounds to use steam have been converted to a module. programs.steam.enable enables steam, controller support and the workarounds. + + + + + Support for built-in LCDs in various pieces of Logitech hardware (keyboards and USB speakers). hardware.logitech.lcd.enable enables support for all hardware supported by the g15daemon project. + + + + + The GRUB module gained support for basic password protection, which + allows to restrict non-default entries in the boot menu to one or more + users. The users and passwords are defined via the option + . + Note: Password support is only available in GRUB version 2. + + + + + + + + NixOS module changes: + + + + + The NixOS module system now supports freeform modules as a mix between types.attrsOf and types.submodule. These allow you to explicitly declare a subset of options while still permitting definitions without an associated option. See for how to use them. + + + + + Following its deprecation in 20.03, the Perl NixOS test driver has been removed. + All remaining tests have been ported to the Python test framework. + Code outside nixpkgs using make-test.nix or + testing.nix needs to be ported to + make-test-python.nix and + testing-python.nix respectively. + + + + + Subordinate GID and UID mappings are now set up automatically for all normal users. + This will make container tools like Podman work as non-root users out of the box. + + + + + + +
+ +
+ New Services + + + In addition to 1119 new, 118 updated, and 476 removed options; 61 new modules were added since the last release: + + + + + + Hardware: + + + + + adds easy support of system76 firmware + + + + + loads uinput kernel module + + + + + enable good defaults for HiDPI displays + + + + + support for Wooting keyboards + + + + + xpadneo driver for Xbox One wireless controllers + + + - maxx package removed along with services.xserver.desktopManager.maxx module. - Please migrate to cdesktopenv and services.xserver.desktopManager.cde module. + Programs: + + + + enable hamster time tracking + + + + + adds easy enablement of steam and related system configuration + + + - We now distribute a GNOME ISO. + Security: + + + + alternative to sudo, allows non-root users to execute commands as root + + + + + add Trusted Platform Module 2 support + + + - PHP now defaults to PHP 7.4, updated from 7.3. + System: + + + + start an OpenVPN client during initrd boot + + + - PHP 7.2 is no longer supported due to upstream not supporting this version for the entire lifecycle of the 20.09 release. + Virtualization: + + + + use nixos-containers + + + + + run OCI (Docker) containers + + + + + daemonless container engine + + + + - Python 3 now defaults to Python 3.8 instead of 3.7. - - - - - Python 3.5 has reached its upstream EOL at the end of September 2020: it - has been removed from the list of available packages. - - - - - Two new options, authorizedKeysCommand - and authorizedKeysCommandUser, have - been added to the openssh module. If you have AuthorizedKeysCommand - in your services.openssh.extraConfig you should - make use of these new options instead. - - - - - There is a new module for Podman(virtualisation.podman), a drop-in replacement for the Docker command line. - - - - - The new virtualisation.containers module manages configuration shared by the CRI-O and Podman modules. - - - - - Declarative Docker containers are renamed from docker-containers to virtualisation.oci-containers.containers. - This is to make it possible to use podman instead of docker. + Services: + + + + Anki sync server + + + + + Subtitle manager for Sonarr and Radarr + + + + + Biboumi XMPP gateway to IRC + + + + + Blockbook-frontend, a service for the Trezor wallet + + + + + Wayland cage service + + + + + IRC daemon, which can be accessed throught the browser + + + + + Tool for coordinating volunteers and shifts on large events + + + + + text-expander written in rust + + + + + Folding@home client + + + + + Web-based team code collaboration tool + + + + + Matrix bot + + + + + xow as a systemd service + + + + + Hercules CI build agent + + + + + Jitsi Conference Focus, component of Jitsi Meet + + + + + A web file repository + + + + + Secure, simple and scalable video conferences + + + + + Jitsi Videobridge, a WebRTC compatible router + + + + + Jupyterhub development server + + + + + Lightweight Kubernetes distribution + + + + + Magic Wormhole Mailbox Server + + + + + Parental Control support + + + + + Matrix and Discord bridge + + + + + Matrix-Telegram puppeting/relaybot bridge + + + + + Japanese DTV Tuner Server Service + + + + + Molly-Brown Gemini server + + + + + Mullvad VPN daemon + + + + + Namecoin to DNS bridge + + + + + NextDNS to DoH Proxy service + + + + + Google storage bucket to be used as a nix store + + + + + OneDrive sync service + + + + + Pastebin-like service + + + + + Manage network booting of machines + + + + + Privacy authentication server + + + + + Quorum blockchain daemon + + + + + RobustIRC bridge + + + + + Generate RSS and Atom feeds + + + + + rTorrent service + + + + + SmartDNS DNS server + + + + + SOGo groupware + + + + + Teeworlds game server + + + + + torque computing node + + + + + torque server + + + + + A total uptime service + + + + + X11 remote server + + + + + Wasabi backend service + + + + + Yubikey agent + + + + + Zigbee to MQTT bridge + + + + + + +
+ +
+ Backward Incompatibilities + + + When upgrading from a previous release, please be aware of the following + incompatible changes: + + + MariaDB has been updated to 10.4, MariaDB Galera to 26.4. @@ -144,36 +660,7 @@ GRANT ALL PRIVILEGES ON *.* TO 'mysql'@'localhost' WITH GRANT OPTION; from the default of mysql to a different user please change 'mysql'@'localhost' to the corresponding user instead. - - - The new option documentation.man.generateCaches - has been added to automatically generate the man-db caches, which are needed by utilities - like whatis and apropos. The caches are generated during the build of - the NixOS configuration: since this can be expensive when a large number of packages are installed, the - feature is disabled by default. - - - - - services.postfix.sslCACert was replaced by services.postfix.tlsTrustedAuthorities which now defaults to system certificate authorities. - - - - - Subordinate GID and UID mappings are now set up automatically for all normal users. - This will make container tools like Podman work as non-root users out of the box. - - - - - The various documented workarounds to use steam have been converted to a module. programs.steam.enable enables steam, controller support and the workarounds. - - - - - Support for built-in LCDs in various pieces of Logitech hardware (keyboards and USB speakers). hardware.logitech.lcd.enable enables support for all hardware supported by the g15daemon project. - - + Zabbix now defaults to 5.0, updated from 4.4. Please carefully read through @@ -208,72 +695,13 @@ GRANT ALL PRIVILEGES ON *.* TO 'mysql'@'localhost' WITH GRANT OPTION; - - - The NixOS module system now supports freeform modules as a mix between types.attrsOf and types.submodule. These allow you to explicitly declare a subset of options while still permitting definitions without an associated option. See for how to use them. - - - - - The GRUB module gained support for basic password protection, which - allows to restrict non-default entries in the boot menu to one or more - users. The users and passwords are defined via the option - . - Note: Password support is only avaiable in GRUB version 2. - - - - - Following its deprecation in 20.03, the Perl NixOS test driver has been removed. - All remaining tests have been ported to the Python test framework. - Code outside nixpkgs using make-test.nix or - testing.nix needs to be ported to - make-test-python.nix and - testing-python.nix respectively. - - - -
-
- New Services - - - The following new services were added since the last release: - - - - There is a new module that provides doas, a lighter alternative to sudo with many of the same features. - - - - - Hercules CI Agent is a specialized build agent for projects built with Nix. See the options and setup. + maxx package removed along with services.xserver.desktopManager.maxx module. + Please migrate to cdesktopenv and services.xserver.desktopManager.cde module. - - -
- -
- Backward Incompatibilities - - - When upgrading from a previous release, please be aware of the following - incompatible changes: - - - The matrix-synapse module no longer includes optional dependencies by default, they have to be added through the plugins option. @@ -300,7 +728,7 @@ GRANT ALL PRIVILEGES ON *.* TO 'mysql'@'localhost' WITH GRANT OPTION; It can still be enabled by providing phantomJsSupport = true to the package instantiation: { services.grafana.package = pkgs.grafana.overrideAttrs (oldAttrs: rec { - phantomJsSupport = false; + phantomJsSupport = true; }); } @@ -643,6 +1071,13 @@ systemd.services.nginx.serviceConfig.ReadWritePaths = [ "/var/www" ]; In the resilio module, has been changed to listen to [::1] instead of 0.0.0.0. + + + sslh has been updated to version + 1.21. The ssl probe must be + renamed to tls in . + + Users of OpenAFS 1.6 must @@ -1102,6 +1537,8 @@ services.transmission.settings.rpc-bind-address = "0.0.0.0"; nextcloud18 before upgrading to nextcloud19 since Nextcloud doesn't support upgrades across multiple major versions. + + The nixos-run-vms script now deletes the previous run machines states on test startup. You can use the @@ -1181,7 +1618,7 @@ services.transmission.settings.rpc-bind-address = "0.0.0.0"; nixpkgs. It was a work in progress to package the Deepin Desktop Environment (DDE), including libraries, tools and applications, and it was still - missing a service to lauch the desktop environment. It has shown + missing a service to launch the desktop environment. It has shown to no longer be a feasible goal due to reasons discussed in issue #94870. The package netease-cloud-music has also been @@ -1226,4 +1663,131 @@ services.transmission.settings.rpc-bind-address = "0.0.0.0";
+ +
+ Contributions + + I, Jonathan Ringer, would like to thank the following individuals for their work on nixpkgs. This release could not be done without the hard work of the NixOS community. There were 31282 contributions across 1313 contributors. + + + + Top contributors to NixOS/Nixpkgs from the 20.03 release to the 20.09 release: + + + + 2288 Mario Rodas + + + + + 1837 Frederik Rietdijk + + + + + 946 Jörg Thalheim + + + + + 925 Maximilian Bosch + + + + + 687 Jonathan Ringer + + + + + 651 Jan Tojnar + + + + + 622 Daniël de Kok + + + + + 605 WORLDofPEACE + + + + + 597 Florian Klink + + + + + 528 José Romildo Malaquias + + + + + + + Top contributors to stabilizing this release (Zero Hydra Failures period): + + + + 281 volth + + + + + 101 Robert Scott + + + + + 86 Tim Steinbach + + + + + 76 WORLDofPEACE + + + + + 49 Maximilian Bosch + + + + + 42 Thomas Tuegel + + + + + 37 Doron Behar + + + + + 36 Vladimír Čunát + + + + + 27 Jonathan Ringer + + + + + 27 Maciej Krüger + + + + + + I, Jonathan Ringer, would also like to personally thank @WORLDofPEACE for their help in mentoring me on the release process. Special thanks also goes to Thomas Tuegel for helping immensely with stabilizing Qt, KDE, and Plasma5; I would also like to thank Robert Scott for his numerous fixes and pull request reviews. + + +
diff --git a/nixos/doc/manual/release-notes/rl-2103.xml b/nixos/doc/manual/release-notes/rl-2103.xml index dd91bf44c12..374ea1cbd16 100644 --- a/nixos/doc/manual/release-notes/rl-2103.xml +++ b/nixos/doc/manual/release-notes/rl-2103.xml @@ -65,10 +65,21 @@ - The option has been renamed to - . The path of font directory - has also been changed to /run/current-system/sw/share/X11/fonts, - for consistency with other X11 resources. + If the services.dbus module is enabled, then + the user D-Bus session is now always socket activated. The + associated options services.dbus.socketActivated + and services.xserver.startDbusSession have + therefore been removed and you will receive a warning if + they are present in your configuration. This change makes the + user D-Bus session available also for non-graphical logins. + + + + + The option has been renamed to + . The path of font directory + has also been changed to /run/current-system/sw/share/X11/fonts, + for consistency with other X11 resources. @@ -82,6 +93,22 @@ kicad/default.nix. + + + The socket for the pdns-recursor module was moved from /var/lib/pdns-recursor + to /run/pdns-recursor to match upstream. + + + + + PowerDNS has been updated from 4.2.x to 4.3.x. Please + be sure to review the Upgrade Notes + provided by upstream before upgrading. Worth specifically noting is that the service now runs + entirely as a dedicated pdns user, instead of starting as root + and dropping privileges, as well as the default socket-dir location changing from + /var/lib/powerdns to /run/pdns. + + diff --git a/nixos/lib/build-vms.nix b/nixos/lib/build-vms.nix index b1575fc13bb..ebbb0296bef 100644 --- a/nixos/lib/build-vms.nix +++ b/nixos/lib/build-vms.nix @@ -18,9 +18,6 @@ rec { inherit pkgs; - qemu = pkgs.qemu_test; - - # Build a virtual network from an attribute set `{ machine1 = # config1; ... machineN = configN; }', where `machineX' is the # hostname and `configX' is a NixOS system configuration. Each @@ -39,7 +36,6 @@ rec { [ ../modules/virtualisation/qemu-vm.nix ../modules/testing/test-instrumentation.nix # !!! should only get added for automated test runs { key = "no-manual"; documentation.nixos.enable = false; } - { key = "qemu"; system.build.qemu = qemu; } { key = "nodes"; _module.args.nodes = nodes; } ] ++ optional minimal ../modules/testing/minimal-kernel.nix; }; diff --git a/nixos/lib/test-driver/test-driver.py b/nixos/lib/test-driver/test-driver.py index 156392ad1e3..68bd35dd98e 100644 --- a/nixos/lib/test-driver/test-driver.py +++ b/nixos/lib/test-driver/test-driver.py @@ -110,7 +110,6 @@ def create_vlan(vlan_nr: str) -> Tuple[str, str, "subprocess.Popen[bytes]", Any] pty_master, pty_slave = pty.openpty() vde_process = subprocess.Popen( ["vde_switch", "-s", vde_socket, "--dirmode", "0700"], - bufsize=1, stdin=pty_slave, stdout=subprocess.PIPE, stderr=subprocess.PIPE, @@ -748,7 +747,6 @@ class Machine: self.process = subprocess.Popen( self.script, - bufsize=1, stdin=subprocess.DEVNULL, stdout=subprocess.PIPE, stderr=subprocess.STDOUT, diff --git a/nixos/lib/testing-python.nix b/nixos/lib/testing-python.nix index 498f97336c0..13abfb9a111 100644 --- a/nixos/lib/testing-python.nix +++ b/nixos/lib/testing-python.nix @@ -3,13 +3,13 @@ # Use a minimal kernel? , minimal ? false # Ignored -, config ? {} +, config ? { } # !!! See comment about args in lib/modules.nix -, specialArgs ? {} +, specialArgs ? { } # Modules to add to each VM -, extraConfigurations ? [] }: +, extraConfigurations ? [ ] +}: -with import ./build-vms.nix { inherit system pkgs minimal specialArgs extraConfigurations; }; with pkgs; rec { @@ -17,40 +17,41 @@ rec { inherit pkgs; - testDriver = let - testDriverScript = ./test-driver/test-driver.py; - in stdenv.mkDerivation { - name = "nixos-test-driver"; + mkTestDriver = + let + testDriverScript = ./test-driver/test-driver.py; + in + qemu_pkg: stdenv.mkDerivation { + name = "nixos-test-driver"; - nativeBuildInputs = [ makeWrapper ]; - buildInputs = [ (python3.withPackages (p: [ p.ptpython ])) ]; - checkInputs = with python3Packages; [ pylint black mypy ]; + nativeBuildInputs = [ makeWrapper ]; + buildInputs = [ (python3.withPackages (p: [ p.ptpython ])) ]; + checkInputs = with python3Packages; [ pylint black mypy ]; - dontUnpack = true; + dontUnpack = true; - preferLocalBuild = true; + preferLocalBuild = true; - doCheck = true; - checkPhase = '' - mypy --disallow-untyped-defs \ - --no-implicit-optional \ - --ignore-missing-imports ${testDriverScript} - pylint --errors-only ${testDriverScript} - black --check --diff ${testDriverScript} - ''; - - installPhase = - '' - mkdir -p $out/bin - cp ${testDriverScript} $out/bin/nixos-test-driver - chmod u+x $out/bin/nixos-test-driver - # TODO: copy user script part into this file (append) - - wrapProgram $out/bin/nixos-test-driver \ - --prefix PATH : "${lib.makeBinPath [ qemu_test vde2 netpbm coreutils ]}" \ + doCheck = true; + checkPhase = '' + mypy --disallow-untyped-defs \ + --no-implicit-optional \ + --ignore-missing-imports ${testDriverScript} + pylint --errors-only ${testDriverScript} + black --check --diff ${testDriverScript} ''; - }; + installPhase = + '' + mkdir -p $out/bin + cp ${testDriverScript} $out/bin/nixos-test-driver + chmod u+x $out/bin/nixos-test-driver + # TODO: copy user script part into this file (append) + + wrapProgram $out/bin/nixos-test-driver \ + --prefix PATH : "${lib.makeBinPath [ qemu_pkg vde2 netpbm coreutils ]}" \ + ''; + }; # Run an automated test suite in the given virtual network. # `driver' is the script that runs the network. @@ -73,11 +74,10 @@ rec { { testScript , enableOCR ? false , name ? "unnamed" - # Skip linting (mainly intended for faster dev cycles) + # Skip linting (mainly intended for faster dev cycles) , skipLint ? false , ... } @ t: - let # A standard store path to the vm monitor is built like this: # /tmp/nix-build-vm-test-run-$name.drv-0/vm-state-machine/monitor @@ -86,25 +86,7 @@ rec { maxTestNameLen = 50; testNameLen = builtins.stringLength name; - testDriverName = with builtins; - if testNameLen > maxTestNameLen then - abort ("The name of the test '${name}' must not be longer than ${toString maxTestNameLen} " + - "it's currently ${toString testNameLen} characters long.") - else - "nixos-test-driver-${name}"; - nodes = buildVirtualNetwork ( - t.nodes or (if t ? machine then { machine = t.machine; } else { })); - - testScript' = - # Call the test script with the computed nodes. - if lib.isFunction testScript - then testScript { inherit nodes; } - else testScript; - - vlans = map (m: m.config.virtualisation.vlans) (lib.attrValues nodes); - - vms = map (m: m.config.system.build.vm) (lib.attrValues nodes); ocrProg = tesseract4.override { enableLanguages = [ "eng" ]; }; @@ -113,72 +95,124 @@ rec { # Generate convenience wrappers for running the test driver # interactively with the specified network, and for starting the # VMs from the command line. - driver = let warn = if skipLint then lib.warn "Linting is disabled!" else lib.id; in warn (runCommand testDriverName - { buildInputs = [ makeWrapper]; - testScript = testScript'; - preferLocalBuild = true; - testName = name; - } - '' - mkdir -p $out/bin + mkDriver = qemu_pkg: + let + build-vms = import ./build-vms.nix { + inherit system pkgs minimal specialArgs; + extraConfigurations = extraConfigurations ++ (pkgs.lib.optional (qemu_pkg != null) + { + virtualisation.qemu.package = qemu_pkg; + } + ); + }; - echo -n "$testScript" > $out/test-script - ${lib.optionalString (!skipLint) '' - ${python3Packages.black}/bin/black --check --diff $out/test-script - ''} + # FIXME: get this pkg from the module system + testDriver = mkTestDriver (if qemu_pkg == null then pkgs.qemu_test else qemu_pkg); - ln -s ${testDriver}/bin/nixos-test-driver $out/bin/ - vms=($(for i in ${toString vms}; do echo $i/bin/run-*-vm; done)) - wrapProgram $out/bin/nixos-test-driver \ - --add-flags "''${vms[*]}" \ - ${lib.optionalString enableOCR - "--prefix PATH : '${ocrProg}/bin:${imagemagick_tiff}/bin'"} \ - --run "export testScript=\"\$(${coreutils}/bin/cat $out/test-script)\"" \ - --set VLANS '${toString vlans}' - ln -s ${testDriver}/bin/nixos-test-driver $out/bin/nixos-run-vms - wrapProgram $out/bin/nixos-run-vms \ - --add-flags "''${vms[*]}" \ - ${lib.optionalString enableOCR "--prefix PATH : '${ocrProg}/bin'"} \ - --set tests 'start_all(); join_all();' \ - --set VLANS '${toString vlans}' \ - ${lib.optionalString (builtins.length vms == 1) "--set USE_SERIAL 1"} - ''); # " + nodes = build-vms.buildVirtualNetwork ( + t.nodes or (if t ? machine then { machine = t.machine; } else { }) + ); + vlans = map (m: m.config.virtualisation.vlans) (lib.attrValues nodes); + vms = map (m: m.config.system.build.vm) (lib.attrValues nodes); + + testScript' = + # Call the test script with the computed nodes. + if lib.isFunction testScript + then testScript { inherit nodes; } + else testScript; + + testDriverName = with builtins; + if testNameLen > maxTestNameLen then + abort + ("The name of the test '${name}' must not be longer than ${toString maxTestNameLen} " + + "it's currently ${toString testNameLen} characters long.") + else + "nixos-test-driver-${name}"; + + warn = if skipLint then lib.warn "Linting is disabled!" else lib.id; + in + warn (runCommand testDriverName + { + buildInputs = [ makeWrapper ]; + testScript = testScript'; + preferLocalBuild = true; + testName = name; + passthru = { + inherit nodes; + }; + } + '' + mkdir -p $out/bin + + echo -n "$testScript" > $out/test-script + ${lib.optionalString (!skipLint) '' + ${python3Packages.black}/bin/black --check --diff $out/test-script + ''} + + ln -s ${testDriver}/bin/nixos-test-driver $out/bin/ + vms=($(for i in ${toString vms}; do echo $i/bin/run-*-vm; done)) + wrapProgram $out/bin/nixos-test-driver \ + --add-flags "''${vms[*]}" \ + ${lib.optionalString enableOCR + "--prefix PATH : '${ocrProg}/bin:${imagemagick_tiff}/bin'"} \ + --run "export testScript=\"\$(${coreutils}/bin/cat $out/test-script)\"" \ + --set VLANS '${toString vlans}' + ln -s ${testDriver}/bin/nixos-test-driver $out/bin/nixos-run-vms + wrapProgram $out/bin/nixos-run-vms \ + --add-flags "''${vms[*]}" \ + ${lib.optionalString enableOCR "--prefix PATH : '${ocrProg}/bin'"} \ + --set tests 'start_all(); join_all();' \ + --set VLANS '${toString vlans}' \ + ${lib.optionalString (builtins.length vms == 1) "--set USE_SERIAL 1"} + ''); # " passMeta = drv: drv // lib.optionalAttrs (t ? meta) { - meta = (drv.meta or {}) // t.meta; + meta = (drv.meta or { }) // t.meta; }; + driver = mkDriver null; + driverInteractive = mkDriver pkgs.qemu; + test = passMeta (runTests driver); - nodeNames = builtins.attrNames nodes; + nodeNames = builtins.attrNames driver.nodes; invalidNodeNames = lib.filter - (node: builtins.match "^[A-z_]([A-z0-9_]+)?$" node == null) nodeNames; + (node: builtins.match "^[A-z_]([A-z0-9_]+)?$" node == null) + nodeNames; in - if lib.length invalidNodeNames > 0 then - throw '' - Cannot create machines out of (${lib.concatStringsSep ", " invalidNodeNames})! - All machines are referenced as python variables in the testing framework which will break the - script when special characters are used. + if lib.length invalidNodeNames > 0 then + throw '' + Cannot create machines out of (${lib.concatStringsSep ", " invalidNodeNames})! + All machines are referenced as python variables in the testing framework which will break the + script when special characters are used. - Please stick to alphanumeric chars and underscores as separation. - '' - else - test // { - inherit nodes driver test; - }; + Please stick to alphanumeric chars and underscores as separation. + '' + else + test // { + inherit test driver driverInteractive; + inherit (driver) nodes; + }; runInMachine = { drv , machine , preBuild ? "" , postBuild ? "" + , qemu ? pkgs.qemu_test , ... # ??? }: let - vm = buildVM { } - [ machine - { key = "run-in-machine"; + build-vms = import ./build-vms.nix { + inherit system pkgs minimal specialArgs extraConfigurations; + }; + + vm = build-vms.buildVM { } + [ + machine + { + key = "run-in-machine"; networking.hostName = "client"; nix.readOnlyStore = false; virtualisation.writableStore = false; @@ -221,20 +255,20 @@ rec { unset xchg export tests='${testScript}' - ${testDriver}/bin/nixos-test-driver ${vm.config.system.build.vm}/bin/run-*-vm + ${mkTestDriver qemu}/bin/nixos-test-driver --keep-vm-state ${vm.config.system.build.vm}/bin/run-*-vm ''; # */ in - lib.overrideDerivation drv (attrs: { - requiredSystemFeatures = [ "kvm" ]; - builder = "${bash}/bin/sh"; - args = ["-e" vmRunCommand]; - origArgs = attrs.args; - origBuilder = attrs.builder; - }); + lib.overrideDerivation drv (attrs: { + requiredSystemFeatures = [ "kvm" ]; + builder = "${bash}/bin/sh"; + args = [ "-e" vmRunCommand ]; + origArgs = attrs.args; + origBuilder = attrs.builder; + }); - runInMachineWithX = { require ? [], ... } @ args: + runInMachineWithX = { require ? [ ], ... } @ args: let client = { ... }: @@ -250,13 +284,13 @@ rec { services.xserver.windowManager.icewm.enable = true; }; in - runInMachine ({ - machine = client; - preBuild = - '' - client.wait_for_x() - ''; - } // args); + runInMachine ({ + machine = client; + preBuild = + '' + client.wait_for_x() + ''; + } // args); simpleTest = as: (makeTest as).test; diff --git a/nixos/modules/config/fonts/fontdir.nix b/nixos/modules/config/fonts/fontdir.nix index 264d73ebafa..c4bd3a077d3 100644 --- a/nixos/modules/config/fonts/fontdir.nix +++ b/nixos/modules/config/fonts/fontdir.nix @@ -8,7 +8,7 @@ let x11Fonts = pkgs.runCommand "X11-fonts" { preferLocalBuild = true; } '' mkdir -p "$out/share/X11/fonts" - font_regexp='.*\.\(ttf\|otf\|pcf\|pfa\|pfb\|bdf\)\(\.gz\)?' + font_regexp='.*\.\(ttf\|ttc\|otf\|pcf\|pfa\|pfb\|bdf\)\(\.gz\)?' find ${toString config.fonts.fonts} -regex "$font_regexp" \ -exec ln -sf -t "$out/share/X11/fonts" '{}' \; cd "$out/share/X11/fonts" diff --git a/nixos/modules/config/no-x-libs.nix b/nixos/modules/config/no-x-libs.nix index 941ab78f863..c3120c2bf30 100644 --- a/nixos/modules/config/no-x-libs.nix +++ b/nixos/modules/config/no-x-libs.nix @@ -30,11 +30,12 @@ with lib; cairo = super.cairo.override { x11Support = false; }; dbus = super.dbus.override { x11Support = false; }; networkmanager-fortisslvpn = super.networkmanager-fortisslvpn.override { withGnome = false; }; + networkmanager-iodine = super.networkmanager-iodine.override { withGnome = false; }; networkmanager-l2tp = super.networkmanager-l2tp.override { withGnome = false; }; networkmanager-openconnect = super.networkmanager-openconnect.override { withGnome = false; }; networkmanager-openvpn = super.networkmanager-openvpn.override { withGnome = false; }; + networkmanager-sstp = super.networkmanager-vpnc.override { withGnome = false; }; networkmanager-vpnc = super.networkmanager-vpnc.override { withGnome = false; }; - networkmanager-iodine = super.networkmanager-iodine.override { withGnome = false; }; gobject-introspection = super.gobject-introspection.override { x11Support = false; }; qemu = super.qemu.override { gtkSupport = false; spiceSupport = false; sdlSupport = false; }; })); diff --git a/nixos/modules/config/system-path.nix b/nixos/modules/config/system-path.nix index 67305e8499c..c65fa1a684f 100644 --- a/nixos/modules/config/system-path.nix +++ b/nixos/modules/config/system-path.nix @@ -33,6 +33,7 @@ let pkgs.ncurses pkgs.netcat config.programs.ssh.package + pkgs.mkpasswd pkgs.procps pkgs.su pkgs.time @@ -142,6 +143,7 @@ in "/share/kservices5" "/share/kservicetypes5" "/share/kxmlgui5" + "/share/systemd" ]; system.path = pkgs.buildEnv { diff --git a/nixos/modules/config/users-groups.nix b/nixos/modules/config/users-groups.nix index 1bb1317a8e8..72285fe631d 100644 --- a/nixos/modules/config/users-groups.nix +++ b/nixos/modules/config/users-groups.nix @@ -35,8 +35,7 @@ let ''; hashedPasswordDescription = '' - To generate a hashed password install the mkpasswd - package and run mkpasswd -m sha-512. + To generate a hashed password run mkpasswd -m sha-512. If set to an empty string (""), this user will be able to log in without being asked for a password (but not via remote @@ -139,6 +138,20 @@ let ''; }; + pamMount = mkOption { + type = with types; attrsOf str; + default = {}; + description = '' + Attributes for user's entry in + pam_mount.conf.xml. + Useful attributes might include path, + options, fstype, and server. + See + for more information. + ''; + }; + shell = mkOption { type = types.either types.shellPackage types.path; default = pkgs.shadow; diff --git a/nixos/modules/hardware/rtl-sdr.nix b/nixos/modules/hardware/rtl-sdr.nix new file mode 100644 index 00000000000..77c8cb59a3d --- /dev/null +++ b/nixos/modules/hardware/rtl-sdr.nix @@ -0,0 +1,20 @@ +{ config, lib, pkgs, ... }: + +let + cfg = config.hardware.rtl-sdr; + +in { + options.hardware.rtl-sdr = { + enable = lib.mkEnableOption '' + Enables rtl-sdr udev rules and ensures 'plugdev' group exists. + This is a prerequisite to using devices supported by rtl-sdr without + being root, since rtl-sdr USB descriptors will be owned by plugdev + through udev. + ''; + }; + + config = lib.mkIf cfg.enable { + services.udev.packages = [ pkgs.rtl-sdr ]; + users.groups.plugdev = {}; + }; +} diff --git a/nixos/modules/hardware/video/nvidia.nix b/nixos/modules/hardware/video/nvidia.nix index 2acb891f1a9..d1cf7d05c1b 100644 --- a/nixos/modules/hardware/video/nvidia.nix +++ b/nixos/modules/hardware/video/nvidia.nix @@ -235,7 +235,7 @@ in hardware.opengl.extraPackages32 = optional offloadCfg.enable nvidia_libs32; environment.systemPackages = [ nvidia_x11.bin nvidia_x11.settings ] - ++ filter (p: p != null) [ nvidia_x11.persistenced ]; + ++ optionals nvidiaPersistencedEnabled [ nvidia_x11.persistenced ]; systemd.packages = optional cfg.powerManagement.enable nvidia_x11.out; diff --git a/nixos/modules/i18n/input-method/default.xml b/nixos/modules/i18n/input-method/default.xml index e15f6669081..73911059f8a 100644 --- a/nixos/modules/i18n/input-method/default.xml +++ b/nixos/modules/i18n/input-method/default.xml @@ -252,8 +252,8 @@ i18n.inputMethod = { Hime is an extremely easy-to-use input method framework. It is lightweight, stable, powerful and supports many commonly used input methods, including - Cangjie, Zhuyin, Dayi, Rank, Shrimp, Greek, Japanese Anthy, Korean Pinyin, - Latin Alphabet, Rancang hunting birds, cool music, etc... + Cangjie, Zhuyin, Dayi, Rank, Shrimp, Greek, Korean Pinyin, Latin Alphabet, + etc... diff --git a/nixos/modules/i18n/input-method/hime.nix b/nixos/modules/i18n/input-method/hime.nix index a1b346a0f84..8482130db3e 100644 --- a/nixos/modules/i18n/input-method/hime.nix +++ b/nixos/modules/i18n/input-method/hime.nix @@ -1,23 +1,9 @@ -{ config, pkgs, ... }: +{ config, pkgs, lib, ... }: with lib; { - options = { - i18n.inputMethod.hime = { - enableChewing = mkOption { - type = with types; nullOr bool; - default = null; - description = "enable chewing input method"; - }; - enableAnthy = mkOption { - type = with types; nullOr bool; - default = null; - description = "enable anthy input method"; - }; - }; - }; - config = mkIf (config.i18n.inputMethod.enabled == "hime") { + i18n.inputMethod.package = pkgs.hime; environment.variables = { GTK_IM_MODULE = "hime"; QT_IM_MODULE = "hime"; diff --git a/nixos/modules/installer/cd-dvd/installation-cd-graphical-gnome.nix b/nixos/modules/installer/cd-dvd/installation-cd-graphical-gnome.nix index 8c98691116d..803bae4212e 100644 --- a/nixos/modules/installer/cd-dvd/installation-cd-graphical-gnome.nix +++ b/nixos/modules/installer/cd-dvd/installation-cd-graphical-gnome.nix @@ -9,7 +9,14 @@ with lib; isoImage.edition = "gnome"; - services.xserver.desktopManager.gnome3.enable = true; + services.xserver.desktopManager.gnome3 = { + # Add firefox to favorite-apps + favoriteAppsOverride = '' + [org.gnome.shell] + favorite-apps=[ 'firefox.desktop', 'org.gnome.Geary.desktop', 'org.gnome.Calendar.desktop', 'org.gnome.Music.desktop', 'org.gnome.Photos.desktop', 'org.gnome.Nautilus.desktop' ] + ''; + enable = true; + }; services.xserver.displayManager = { gdm = { diff --git a/nixos/modules/installer/tools/nix-fallback-paths.nix b/nixos/modules/installer/tools/nix-fallback-paths.nix index a15a2dbadb8..bd70bd20013 100644 --- a/nixos/modules/installer/tools/nix-fallback-paths.nix +++ b/nixos/modules/installer/tools/nix-fallback-paths.nix @@ -1,6 +1,6 @@ { - x86_64-linux = "/nix/store/4vz8sh9ngx34ivi0bw5hlycxdhvy5hvz-nix-2.3.7"; - i686-linux = "/nix/store/dzxkg9lpp60bjmzvagns42vqlz3yq5kx-nix-2.3.7"; - aarch64-linux = "/nix/store/cfvf8nl8mwyw817by5y8zd3s8pnf5m9f-nix-2.3.7"; - x86_64-darwin = "/nix/store/5ira7xgs92inqz1x8l0n1wci4r79hnd0-nix-2.3.7"; + x86_64-linux = "/nix/store/qxayqjmlpqnmwg5yfsjjayw220ls8i2r-nix-2.3.8"; + i686-linux = "/nix/store/5834psaay75048jp6d07liqh4j0v1swd-nix-2.3.8"; + aarch64-linux = "/nix/store/pic90a5fxvifz05jzkd0zak21f9mjin6-nix-2.3.8"; + x86_64-darwin = "/nix/store/cjx3f8z12wlayp5983kli2a52ipi8jz2-nix-2.3.8"; } diff --git a/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix b/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix index 0c9f8522cc1..e49ceba2424 100644 --- a/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix +++ b/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix @@ -15,4 +15,4 @@ with import ../../../../lib/testing-python.nix { pkgs = import ../../../../.. { inherit system config; }; }; -(makeTest { inherit nodes; testScript = ""; }).driver +(makeTest { inherit nodes; testScript = ""; }).driverInteractive diff --git a/nixos/modules/installer/tools/nixos-generate-config.pl b/nixos/modules/installer/tools/nixos-generate-config.pl index 54b84521bdf..44f4c44a56c 100644 --- a/nixos/modules/installer/tools/nixos-generate-config.pl +++ b/nixos/modules/installer/tools/nixos-generate-config.pl @@ -625,6 +625,10 @@ EOF my $networkingDhcpConfig = generateNetworkingDhcpConfig(); + (my $desktopConfiguration = <nixos-generate-config - saves to /etc/nixos/configuration.nix. + options.system.nixos-generate-config = { + configuration = mkOption { + internal = true; + type = types.str; + description = '' + The NixOS module that nixos-generate-config + saves to /etc/nixos/configuration.nix. - This is an internal option. No backward compatibility is guaranteed. - Use at your own risk! + This is an internal option. No backward compatibility is guaranteed. + Use at your own risk! - Note that this string gets spliced into a Perl script. The perl - variable $bootLoaderConfig can be used to - splice in the boot loader configuration. - ''; + Note that this string gets spliced into a Perl script. The perl + variable $bootLoaderConfig can be used to + splice in the boot loader configuration. + ''; + }; + + desktopConfiguration = mkOption { + internal = true; + type = types.str; + default = ""; + description = '' + Text to preseed the desktop configuration that nixos-generate-config + saves to /etc/nixos/configuration.nix. + + This is an internal option. No backward compatibility is guaranteed. + Use at your own risk! + + Note that this string gets spliced into a Perl script. The perl + variable $bootLoaderConfig can be used to + splice in the boot loader configuration. + ''; + }; }; config = { - system.nixos-generate-config.configuration = mkDefault '' # Edit this configuration file to define what should be installed on # your system. Help is available in the configuration.nix(5) man page @@ -113,6 +131,9 @@ in # networking.hostName = "nixos"; # Define your hostname. # networking.wireless.enable = true; # Enables wireless support via wpa_supplicant. + # Set your time zone. + # time.timeZone = "Europe/Amsterdam"; + $networkingDhcpConfig # Configure network proxy if necessary # networking.proxy.default = "http://user:password\@proxy:port/"; @@ -125,13 +146,32 @@ in # keyMap = "us"; # }; - # Set your time zone. - # time.timeZone = "Europe/Amsterdam"; + $desktopConfiguration + # Configure keymap in X11 + # services.xserver.layout = "us"; + # services.xserver.xkbOptions = "eurosign:e"; + + # Enable CUPS to print documents. + # services.printing.enable = true; + + # Enable sound. + # sound.enable = true; + # hardware.pulseaudio.enable = true; + + # Enable touchpad support (enabled default in most desktopManager). + # services.xserver.libinput.enable = true; + + # Define a user account. Don't forget to set a password with ‘passwd’. + # users.users.jane = { + # isNormalUser = true; + # extraGroups = [ "wheel" ]; # Enable ‘sudo’ for the user. + # }; # List packages installed in system profile. To search, run: # \$ nix search wget # environment.systemPackages = with pkgs; [ # wget vim + # firefox # ]; # Some programs need SUID wrappers, can be configured further or are @@ -140,7 +180,6 @@ in # programs.gnupg.agent = { # enable = true; # enableSSHSupport = true; - # pinentryFlavor = "gnome3"; # }; # List services that you want to enable: @@ -154,31 +193,6 @@ in # Or disable the firewall altogether. # networking.firewall.enable = false; - # Enable CUPS to print documents. - # services.printing.enable = true; - - # Enable sound. - # sound.enable = true; - # hardware.pulseaudio.enable = true; - - # Enable the X11 windowing system. - # services.xserver.enable = true; - # services.xserver.layout = "us"; - # services.xserver.xkbOptions = "eurosign:e"; - - # Enable touchpad support. - # services.xserver.libinput.enable = true; - - # Enable the KDE Desktop Environment. - # services.xserver.displayManager.sddm.enable = true; - # services.xserver.desktopManager.plasma5.enable = true; - - # Define a user account. Don't forget to set a password with ‘passwd’. - # users.users.jane = { - # isNormalUser = true; - # extraGroups = [ "wheel" ]; # Enable ‘sudo’ for the user. - # }; - # This value determines the NixOS release from which the default # settings for stateful data, like file locations and database versions # on your system were taken. It‘s perfectly fine and recommended to leave diff --git a/nixos/modules/misc/ids.nix b/nixos/modules/misc/ids.nix index 81d5d04fa5e..4e0f8ba718e 100644 --- a/nixos/modules/misc/ids.nix +++ b/nixos/modules/misc/ids.nix @@ -297,7 +297,7 @@ in headphones = 266; couchpotato = 267; gogs = 268; - pdns-recursor = 269; + #pdns-recursor = 269; # dynamically allocated as of 2020-20-18 #kresd = 270; # switched to "knot-resolver" with dynamic ID rpc = 271; geoip = 272; @@ -468,7 +468,7 @@ in #minecraft = 114; # unused vault = 115; #ripped = 116; # unused - #murmur = 117; # unused + murmur = 117; foundationdb = 118; newrelic = 119; starbound = 120; diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix index 78cfb737177..aa3b71a6124 100644 --- a/nixos/modules/module-list.nix +++ b/nixos/modules/module-list.nix @@ -59,6 +59,7 @@ ./hardware/pcmcia.nix ./hardware/printers.nix ./hardware/raid/hpsa.nix + ./hardware/rtl-sdr.nix ./hardware/steam-hardware.nix ./hardware/system-76.nix ./hardware/tuxedo-keyboard.nix @@ -79,6 +80,7 @@ ./hardware/xpadneo.nix ./i18n/input-method/default.nix ./i18n/input-method/fcitx.nix + ./i18n/input-method/hime.nix ./i18n/input-method/ibus.nix ./i18n/input-method/nabi.nix ./i18n/input-method/uim.nix @@ -171,6 +173,7 @@ ./programs/wavemon.nix ./programs/waybar.nix ./programs/wireshark.nix + ./programs/wshowkeys.nix ./programs/x2goserver.nix ./programs/xfs_quota.nix ./programs/xonsh.nix diff --git a/nixos/modules/programs/chromium.nix b/nixos/modules/programs/chromium.nix index 3f042913619..b727f850a94 100644 --- a/nixos/modules/programs/chromium.nix +++ b/nixos/modules/programs/chromium.nix @@ -29,7 +29,7 @@ in page. To install a chromium extension not included in the chrome web store, append to the extension id a semicolon ";" followed by a URL pointing to an Update Manifest XML file. See - ExtensionInstallForcelist + ExtensionInstallForcelist for additional details. ''; default = []; diff --git a/nixos/modules/programs/ssmtp.nix b/nixos/modules/programs/ssmtp.nix index 15d2750c193..98ff21bd37f 100644 --- a/nixos/modules/programs/ssmtp.nix +++ b/nixos/modules/programs/ssmtp.nix @@ -1,6 +1,6 @@ # Configuration for `ssmtp', a trivial mail transfer agent that can # replace sendmail/postfix on simple systems. It delivers email -# directly to an SMTP server defined in its configuration file, wihout +# directly to an SMTP server defined in its configuration file, without # queueing mail locally. { config, lib, pkgs, ... }: diff --git a/nixos/modules/programs/vim.nix b/nixos/modules/programs/vim.nix index fe0e7f2c6d6..9f46dff2a29 100644 --- a/nixos/modules/programs/vim.nix +++ b/nixos/modules/programs/vim.nix @@ -14,10 +14,20 @@ in { using the EDITOR environment variable. ''; }; + + package = mkOption { + type = types.package; + default = pkgs.vim; + defaultText = "pkgs.vim"; + example = "pkgs.vimHugeX"; + description = '' + vim package to use. + ''; + }; }; config = mkIf cfg.defaultEditor { - environment.systemPackages = [ pkgs.vim ]; - environment.variables = { EDITOR = mkOverride 900 "vim"; }; + environment.systemPackages = [ cfg.package ]; + environment.variables = { EDITOR = mkOverride 900 "vim"; }; }; } diff --git a/nixos/modules/programs/wshowkeys.nix b/nixos/modules/programs/wshowkeys.nix new file mode 100644 index 00000000000..09b008af1d5 --- /dev/null +++ b/nixos/modules/programs/wshowkeys.nix @@ -0,0 +1,22 @@ +{ config, lib, pkgs, ... }: + +with lib; + +let + cfg = config.programs.wshowkeys; +in { + meta.maintainers = with maintainers; [ primeos ]; + + options = { + programs.wshowkeys = { + enable = mkEnableOption '' + wshowkeys (displays keypresses on screen on supported Wayland + compositors). It requires root permissions to read input events, but + these permissions are dropped after startup''; + }; + }; + + config = mkIf cfg.enable { + security.wrappers.wshowkeys.source = "${pkgs.wshowkeys}/bin/wshowkeys"; + }; +} diff --git a/nixos/modules/security/acme.nix b/nixos/modules/security/acme.nix index 5732620f290..47f6bead7c3 100644 --- a/nixos/modules/security/acme.nix +++ b/nixos/modules/security/acme.nix @@ -63,7 +63,7 @@ let script = with builtins; concatStringsSep "\n" (mapAttrsToList (cert: data: '' for fixpath in /var/lib/acme/${escapeShellArg cert} /var/lib/acme/.lego/${escapeShellArg cert}; do if [ -d "$fixpath" ]; then - chmod -R 750 "$fixpath" + chmod -R u=rwX,g=rX,o= "$fixpath" chown -R acme:${data.group} "$fixpath" fi done @@ -271,7 +271,7 @@ let mv domainhash.txt certificates/ chmod 640 certificates/* - chmod -R 700 accounts/* + chmod -R u=rwX,g=,o= accounts/* # Group might change between runs, re-apply it chown 'acme:${data.group}' certificates/* diff --git a/nixos/modules/security/pam.nix b/nixos/modules/security/pam.nix index a20d0a243a8..a517f9e51ce 100644 --- a/nixos/modules/security/pam.nix +++ b/nixos/modules/security/pam.nix @@ -318,6 +318,42 @@ let ''; }; + gnupg = { + enable = mkOption { + type = types.bool; + default = false; + description = '' + If enabled, pam_gnupg will attempt to automatically unlock the + user's GPG keys with the login password via + gpg-agent. The keygrips of all keys to be + unlocked should be written to ~/.pam-gnupg, + and can be queried with gpg -K --with-keygrip. + Presetting passphrases must be enabled by adding + allow-preset-passphrase in + ~/.gnupg/gpg-agent.conf. + ''; + }; + + noAutostart = mkOption { + type = types.bool; + default = false; + description = '' + Don't start gpg-agent if it is not running. + Useful in conjunction with starting gpg-agent as + a systemd user service. + ''; + }; + + storeOnly = mkOption { + type = types.bool; + default = false; + description = '' + Don't send the password immediately after login, but store for PAM + session. + ''; + }; + }; + text = mkOption { type = types.nullOr types.lines; description = "Contents of the PAM service file."; @@ -386,6 +422,7 @@ let || cfg.enableKwallet || cfg.enableGnomeKeyring || cfg.googleAuthenticator.enable + || cfg.gnupg.enable || cfg.duoSecurity.enable)) '' auth required pam_unix.so ${optionalString cfg.allowNullPassword "nullok"} ${optionalString cfg.nodelay "nodelay"} likeauth ${optionalString config.security.pam.enableEcryptfs @@ -397,6 +434,10 @@ let " kwalletd=${pkgs.kdeFrameworks.kwallet.bin}/bin/kwalletd5")} ${optionalString cfg.enableGnomeKeyring "auth optional ${pkgs.gnome3.gnome-keyring}/lib/security/pam_gnome_keyring.so"} + ${optionalString cfg.gnupg.enable + "auth optional ${pkgs.pam_gnupg}/lib/security/pam_gnupg.so" + + optionalString cfg.gnupg.storeOnly " store-only" + } ${optionalString cfg.googleAuthenticator.enable "auth required ${pkgs.googleAuthenticator}/lib/security/pam_google_authenticator.so no_increment_hotp"} ${optionalString cfg.duoSecurity.enable @@ -472,6 +513,10 @@ let " kwalletd=${pkgs.kdeFrameworks.kwallet.bin}/bin/kwalletd5")} ${optionalString (cfg.enableGnomeKeyring) "session optional ${pkgs.gnome3.gnome-keyring}/lib/security/pam_gnome_keyring.so auto_start"} + ${optionalString cfg.gnupg.enable + "session optional ${pkgs.pam_gnupg}/lib/security/pam_gnupg.so" + + optionalString cfg.gnupg.noAutostart " no-autostart" + } ${optionalString (config.virtualisation.lxc.lxcfs.enable) "session optional ${pkgs.lxc}/lib/security/pam_cgfs.so -c all"} ''); diff --git a/nixos/modules/security/pam_mount.nix b/nixos/modules/security/pam_mount.nix index 77e22a96b55..89211bfbde4 100644 --- a/nixos/modules/security/pam_mount.nix +++ b/nixos/modules/security/pam_mount.nix @@ -39,8 +39,16 @@ in environment.etc."security/pam_mount.conf.xml" = { source = let - extraUserVolumes = filterAttrs (n: u: u.cryptHomeLuks != null) config.users.users; - userVolumeEntry = user: "\n"; + extraUserVolumes = filterAttrs (n: u: u.cryptHomeLuks != null || u.pamMount != {}) config.users.users; + mkAttr = k: v: ''${k}="${v}"''; + userVolumeEntry = user: let + attrs = { + user = user.name; + path = user.cryptHomeLuks; + mountpoint = user.home; + } // user.pamMount; + in + "\n"; in pkgs.writeText "pam_mount.conf.xml" '' diff --git a/nixos/modules/security/systemd-confinement.nix b/nixos/modules/security/systemd-confinement.nix index 2927d424a8a..afb81a2b56b 100644 --- a/nixos/modules/security/systemd-confinement.nix +++ b/nixos/modules/security/systemd-confinement.nix @@ -160,7 +160,7 @@ in { + " the 'users.users' option instead as this combination is" + " currently not supported."; } - { assertion = !cfg.serviceConfig.ProtectSystem or false; + { assertion = cfg.serviceConfig ? ProtectSystem -> cfg.serviceConfig.ProtectSystem == false; message = "${whatOpt "ProtectSystem"}. ProtectSystem is not compatible" + " with service confinement as it fails to remount /usr within" + " our chroot. Please disable the option."; diff --git a/nixos/modules/services/admin/salt/master.nix b/nixos/modules/services/admin/salt/master.nix index c6b1b0cc0bd..cb803d323bb 100644 --- a/nixos/modules/services/admin/salt/master.nix +++ b/nixos/modules/services/admin/salt/master.nix @@ -59,5 +59,5 @@ in }; }; - meta.maintainers = with lib.maintainers; [ aneeshusa ]; + meta.maintainers = with lib.maintainers; [ Flakebi ]; } diff --git a/nixos/modules/services/backup/syncoid.nix b/nixos/modules/services/backup/syncoid.nix index fff119c2cf0..e72e3fa59cf 100644 --- a/nixos/modules/services/backup/syncoid.nix +++ b/nixos/modules/services/backup/syncoid.nix @@ -4,6 +4,15 @@ with lib; let cfg = config.services.syncoid; + + # Extract pool names of local datasets (ones that don't contain "@") that + # have the specified type (either "source" or "target") + getPools = type: unique (map (d: head (builtins.match "([^/]+).*" d)) ( + # Filter local datasets + filter (d: !hasInfix "@" d) + # Get datasets of the specified type + (catAttrs type (attrValues cfg.commands)) + )); in { # Interface @@ -26,14 +35,25 @@ in { user = mkOption { type = types.str; - default = "root"; + default = "syncoid"; example = "backup"; description = '' - The user for the service. Sudo or ZFS privilege delegation must be - configured to use a user other than root. + The user for the service. ZFS privilege delegation will be + automatically configured for any local pools used by syncoid if this + option is set to a user other than root. The user will be given the + "hold" and "send" privileges on any pool that has datasets being sent + and the "create", "mount", "receive", and "rollback" privileges on + any pool that has datasets being received. ''; }; + group = mkOption { + type = types.str; + default = "syncoid"; + example = "backup"; + description = "The group for the service."; + }; + sshKey = mkOption { type = types.nullOr types.path; # Prevent key from being copied to store @@ -150,6 +170,18 @@ in { # Implementation config = mkIf cfg.enable { + users = { + users = mkIf (cfg.user == "syncoid") { + syncoid = { + group = cfg.group; + isSystemUser = true; + }; + }; + groups = mkIf (cfg.group == "syncoid") { + syncoid = {}; + }; + }; + systemd.services.syncoid = { description = "Syncoid ZFS synchronization service"; script = concatMapStringsSep "\n" (c: lib.escapeShellArgs @@ -160,10 +192,22 @@ in { ++ c.extraArgs ++ [ "--sendoptions" c.sendOptions "--recvoptions" c.recvOptions + "--no-privilege-elevation" c.source c.target ])) (attrValues cfg.commands); after = [ "zfs.target" ]; - serviceConfig.User = cfg.user; + serviceConfig = { + ExecStartPre = (map (pool: lib.escapeShellArgs [ + "+/run/booted-system/sw/bin/zfs" "allow" + cfg.user "hold,send" pool + ]) (getPools "source")) ++ + (map (pool: lib.escapeShellArgs [ + "+/run/booted-system/sw/bin/zfs" "allow" + cfg.user "create,mount,receive,rollback" pool + ]) (getPools "target")); + User = cfg.user; + Group = cfg.group; + }; startAt = cfg.interval; }; }; diff --git a/nixos/modules/services/continuous-integration/hydra/default.nix b/nixos/modules/services/continuous-integration/hydra/default.nix index 502a5898a5d..252ca17006d 100644 --- a/nixos/modules/services/continuous-integration/hydra/default.nix +++ b/nixos/modules/services/continuous-integration/hydra/default.nix @@ -37,8 +37,6 @@ let haveLocalDB = cfg.dbi == localDB; - inherit (config.system) stateVersion; - hydra-package = let makeWrapperArgs = concatStringsSep " " (mapAttrsToList (key: value: "--set \"${key}\" \"${value}\"") hydraEnv); @@ -96,7 +94,8 @@ in package = mkOption { type = types.package; - defaultText = "pkgs.hydra"; + default = pkgs.hydra-unstable; + defaultText = "pkgs.hydra-unstable"; description = "The Hydra package."; }; @@ -225,34 +224,6 @@ in config = mkIf cfg.enable { - warnings = optional (cfg.package.migration or false) '' - You're currently deploying an older version of Hydra which is needed to - make some required database changes[1]. As soon as this is done, it's recommended - to run `hydra-backfill-ids` and set `services.hydra.package` to `pkgs.hydra-unstable` - after that. - - [1] https://github.com/NixOS/hydra/pull/711 - ''; - - services.hydra.package = with pkgs; - mkDefault ( - if pkgs ? hydra - then throw '' - The Hydra package doesn't exist anymore in `nixpkgs`! It probably exists - due to an overlay. To upgrade Hydra, you need to take two steps as some - bigger changes in the database schema were implemented recently[1]. You first - need to deploy `pkgs.hydra-migration`, run `hydra-backfill-ids` on the server - and then deploy `pkgs.hydra-unstable`. - - If you want to use `pkgs.hydra` from your overlay, please set `services.hydra.package` - explicitly to `pkgs.hydra` and make sure you know what you're doing. - - [1] https://github.com/NixOS/hydra/pull/711 - '' - else if versionOlder stateVersion "20.03" then hydra-migration - else hydra-unstable - ); - users.groups.hydra = { gid = config.ids.gids.hydra; }; diff --git a/nixos/modules/services/continuous-integration/jenkins/default.nix b/nixos/modules/services/continuous-integration/jenkins/default.nix index 1477c471f8a..cdc3b4b5c58 100644 --- a/nixos/modules/services/continuous-integration/jenkins/default.nix +++ b/nixos/modules/services/continuous-integration/jenkins/default.nix @@ -86,8 +86,8 @@ in { }; packages = mkOption { - default = [ pkgs.stdenv pkgs.git pkgs.jdk config.programs.ssh.package pkgs.nix ]; - defaultText = "[ pkgs.stdenv pkgs.git pkgs.jdk config.programs.ssh.package pkgs.nix ]"; + default = [ pkgs.stdenv pkgs.git pkgs.jdk11 config.programs.ssh.package pkgs.nix ]; + defaultText = "[ pkgs.stdenv pkgs.git pkgs.jdk11 config.programs.ssh.package pkgs.nix ]"; type = types.listOf types.package; description = '' Packages to add to PATH for the jenkins process. @@ -207,7 +207,7 @@ in { # For reference: https://wiki.jenkins.io/display/JENKINS/JenkinsLinuxStartupScript script = '' - ${pkgs.jdk}/bin/java ${concatStringsSep " " cfg.extraJavaOptions} -jar ${cfg.package}/webapps/jenkins.war --httpListenAddress=${cfg.listenAddress} \ + ${pkgs.jdk11}/bin/java ${concatStringsSep " " cfg.extraJavaOptions} -jar ${cfg.package}/webapps/jenkins.war --httpListenAddress=${cfg.listenAddress} \ --httpPort=${toString cfg.port} \ --prefix=${cfg.prefix} \ -Djava.awt.headless=true \ diff --git a/nixos/modules/services/desktops/flatpak.nix b/nixos/modules/services/desktops/flatpak.nix index 7da92cc9f26..d0f6b66328a 100644 --- a/nixos/modules/services/desktops/flatpak.nix +++ b/nixos/modules/services/desktops/flatpak.nix @@ -15,6 +15,18 @@ in { options = { services.flatpak = { enable = mkEnableOption "flatpak"; + + guiPackages = mkOption { + internal = true; + type = types.listOf types.package; + default = []; + example = literalExample "[ pkgs.gnome3.gnome-software ]"; + description = '' + Packages that provide an interface for flatpak + (like gnome-software) that will be automatically available + to all users when flatpak is enabled. + ''; + }; }; }; @@ -28,7 +40,7 @@ in { } ]; - environment.systemPackages = [ pkgs.flatpak ]; + environment.systemPackages = [ pkgs.flatpak ] ++ cfg.guiPackages; services.dbus.packages = [ pkgs.flatpak ]; diff --git a/nixos/modules/services/desktops/pipewire.nix b/nixos/modules/services/desktops/pipewire.nix index 5aee59cfdcc..5179cbaf6bc 100644 --- a/nixos/modules/services/desktops/pipewire.nix +++ b/nixos/modules/services/desktops/pipewire.nix @@ -5,8 +5,22 @@ with lib; let cfg = config.services.pipewire; - packages = with pkgs; [ pipewire ]; + enable32BitAlsaPlugins = cfg.alsa.support32Bit + && pkgs.stdenv.isx86_64 + && pkgs.pkgsi686Linux.pipewire != null; + # The package doesn't output to $out/lib/pipewire directly so that the + # overlays can use the outputs to replace the originals in FHS environments. + # + # This doesn't work in general because of missing development information. + jack-libs = pkgs.runCommand "jack-libs" {} '' + mkdir -p "$out/lib" + ln -s "${pkgs.pipewire.jack}/lib" "$out/lib/pipewire" + ''; + pulse-libs = pkgs.runCommand "pulse-libs" {} '' + mkdir -p "$out/lib" + ln -s "${pkgs.pipewire.pulse}/lib" "$out/lib/pipewire" + ''; in { meta = { @@ -25,17 +39,67 @@ in { Automatically run pipewire when connections are made to the pipewire socket. ''; }; + + alsa = { + enable = mkEnableOption "ALSA support"; + support32Bit = mkEnableOption "32-bit ALSA support on 64-bit systems"; + }; + + jack = { + enable = mkEnableOption "JACK audio emulation"; + }; + + pulse = { + enable = mkEnableOption "PulseAudio emulation"; + }; }; }; ###### implementation config = mkIf cfg.enable { - environment.systemPackages = packages; + assertions = [ + { + assertion = cfg.pulse.enable -> !config.hardware.pulseaudio.enable; + message = "PipeWire based PulseAudio emulation doesn't use the PulseAudio service"; + } + { + assertion = cfg.jack.enable -> !config.services.jack.jackd.enable; + message = "PIpeWire based JACK emulation doesn't use the JACK service"; + } + ]; - systemd.packages = packages; + environment.systemPackages = [ pkgs.pipewire ] + ++ lib.optional cfg.jack.enable jack-libs + ++ lib.optional cfg.pulse.enable pulse-libs; + systemd.packages = [ pkgs.pipewire ]; + + # PipeWire depends on DBUS but doesn't list it. Without this booting + # into a terminal results in the service crashing with an error. systemd.user.sockets.pipewire.wantedBy = lib.mkIf cfg.socketActivation [ "sockets.target" ]; - }; + systemd.user.services.pipewire.bindsTo = [ "dbus.service" ]; + services.udev.packages = [ pkgs.pipewire ]; + # If any paths are updated here they must also be updated in the package test. + sound.extraConfig = mkIf cfg.alsa.enable '' + pcm_type.pipewire { + libs.native = ${pkgs.pipewire.lib}/lib/alsa-lib/libasound_module_pcm_pipewire.so ; + ${optionalString enable32BitAlsaPlugins + "libs.32Bit = ${pkgs.pkgsi686Linux.pipewire.lib}/lib/alsa-lib/libasound_module_pcm_pipewire.so ;"} + } + pcm.!default { + @func getenv + vars [ PCM ] + default "plug:pipewire" + playback_mode "-1" + capture_mode "-1" + } + ''; + environment.etc."alsa/conf.d/50-pipewire.conf" = mkIf cfg.alsa.enable { + source = "${pkgs.pipewire}/share/alsa/alsa.conf.d/50-pipewire.conf"; + }; + environment.sessionVariables.LD_LIBRARY_PATH = + lib.optional (cfg.jack.enable || cfg.pulse.enable) "/run/current-system/sw/lib/pipewire"; + }; } diff --git a/nixos/modules/services/hardware/undervolt.nix b/nixos/modules/services/hardware/undervolt.nix index 054ffa35050..9c2f78a755d 100644 --- a/nixos/modules/services/hardware/undervolt.nix +++ b/nixos/modules/services/hardware/undervolt.nix @@ -3,7 +3,12 @@ with lib; let cfg = config.services.undervolt; - cliArgs = lib.cli.toGNUCommandLineShell {} { + + mkPLimit = limit: window: + if (isNull limit && isNull window) then null + else assert asserts.assertMsg (!isNull limit && !isNull window) "Both power limit and window must be set"; + "${toString limit} ${toString window}"; + cliArgs = lib.cli.toGNUCommandLine {} { inherit (cfg) verbose temp @@ -21,6 +26,9 @@ let temp-bat = cfg.tempBat; temp-ac = cfg.tempAc; + + power-limit-long = mkPLimit cfg.p1.limit cfg.p1.window; + power-limit-short = mkPLimit cfg.p2.limit cfg.p2.window; }; in { @@ -104,6 +112,40 @@ in ''; }; + p1.limit = mkOption { + type = with types; nullOr int; + default = null; + description = '' + The P1 Power Limit in Watts. + Both limit and window must be set. + ''; + }; + p1.window = mkOption { + type = with types; nullOr (oneOf [ float int ]); + default = null; + description = '' + The P1 Time Window in seconds. + Both limit and window must be set. + ''; + }; + + p2.limit = mkOption { + type = with types; nullOr int; + default = null; + description = '' + The P2 Power Limit in Watts. + Both limit and window must be set. + ''; + }; + p2.window = mkOption { + type = with types; nullOr (oneOf [ float int ]); + default = null; + description = '' + The P2 Time Window in seconds. + Both limit and window must be set. + ''; + }; + useTimer = mkOption { type = types.bool; default = false; @@ -133,7 +175,7 @@ in serviceConfig = { Type = "oneshot"; Restart = "no"; - ExecStart = "${pkgs.undervolt}/bin/undervolt ${cliArgs}"; + ExecStart = "${pkgs.undervolt}/bin/undervolt ${toString cliArgs}"; }; }; diff --git a/nixos/modules/services/mail/rspamd.nix b/nixos/modules/services/mail/rspamd.nix index aacdbe2aeed..86a3f52107d 100644 --- a/nixos/modules/services/mail/rspamd.nix +++ b/nixos/modules/services/mail/rspamd.nix @@ -153,7 +153,7 @@ let ${concatStringsSep "\n" (mapAttrsToList (name: value: let includeName = if name == "rspamd_proxy" then "proxy" else name; - tryOverride = if value.extraConfig == "" then "true" else "false"; + tryOverride = boolToString (value.extraConfig == ""); in '' worker "${value.type}" { type = "${value.type}"; diff --git a/nixos/modules/services/misc/jellyfin.nix b/nixos/modules/services/misc/jellyfin.nix index 0493dadea94..6a47dc3628f 100644 --- a/nixos/modules/services/misc/jellyfin.nix +++ b/nixos/modules/services/misc/jellyfin.nix @@ -45,6 +45,46 @@ in CacheDirectory = "jellyfin"; ExecStart = "${cfg.package}/bin/jellyfin --datadir '/var/lib/${StateDirectory}' --cachedir '/var/cache/${CacheDirectory}'"; Restart = "on-failure"; + + # Security options: + + NoNewPrivileges = true; + + AmbientCapabilities = ""; + CapabilityBoundingSet = ""; + + # ProtectClock= adds DeviceAllow=char-rtc r + DeviceAllow = ""; + + LockPersonality = true; + + PrivateTmp = true; + PrivateDevices = true; + PrivateUsers = true; + + ProtectClock = true; + ProtectControlGroups = true; + ProtectHostname = true; + ProtectKernelLogs = true; + ProtectKernelModules = true; + ProtectKernelTunables = true; + + RemoveIPC = true; + + RestrictNamespaces = true; + # AF_NETLINK needed because Jellyfin monitors the network connection + RestrictAddressFamilies = [ "AF_NETLINK" "AF_INET" "AF_INET6" ]; + RestrictRealtime = true; + RestrictSUIDSGID = true; + + SystemCallArchitectures = "native"; + SystemCallErrorNumber = "EPERM"; + SystemCallFilter = [ + "@system-service" + + "~@chown" "~@cpu-emulation" "~@debug" "~@keyring" "~@memlock" "~@module" + "~@obsolete" "~@privileged" "~@setuid" + ]; }; }; diff --git a/nixos/modules/services/misc/nix-daemon.nix b/nixos/modules/services/misc/nix-daemon.nix index 2680b1cc0d3..ed05882a634 100644 --- a/nixos/modules/services/misc/nix-daemon.nix +++ b/nixos/modules/services/misc/nix-daemon.nix @@ -45,7 +45,7 @@ let trusted-substituters = ${toString cfg.trustedBinaryCaches} trusted-public-keys = ${toString cfg.binaryCachePublicKeys} auto-optimise-store = ${boolToString cfg.autoOptimiseStore} - require-sigs = ${if cfg.requireSignedBinaryCaches then "true" else "false"} + require-sigs = ${boolToString cfg.requireSignedBinaryCaches} trusted-users = ${toString cfg.trustedUsers} allowed-users = ${toString cfg.allowedUsers} ${optionalString (!cfg.distributedBuilds) '' diff --git a/nixos/modules/services/monitoring/prometheus/exporters.nix b/nixos/modules/services/monitoring/prometheus/exporters.nix index 1233e5cdd1a..a4aa470f5bc 100644 --- a/nixos/modules/services/monitoring/prometheus/exporters.nix +++ b/nixos/modules/services/monitoring/prometheus/exporters.nix @@ -43,6 +43,7 @@ let "postgres" "redis" "rspamd" + "rtl_433" "snmp" "surfboard" "tor" @@ -224,6 +225,8 @@ in services.prometheus.exporters.minio.minioAccessSecret = mkDefault config.services.minio.secretKey; })] ++ [(mkIf config.services.rspamd.enable { services.prometheus.exporters.rspamd.url = mkDefault "http://localhost:11334/stat"; + })] ++ [(mkIf config.services.prometheus.exporters.rtl_433.enable { + hardware.rtl-sdr.enable = mkDefault true; })] ++ [(mkIf config.services.nginx.enable { systemd.services.prometheus-nginx-exporter.after = [ "nginx.service" ]; systemd.services.prometheus-nginx-exporter.requires = [ "nginx.service" ]; diff --git a/nixos/modules/services/monitoring/prometheus/exporters/rtl_433.nix b/nixos/modules/services/monitoring/prometheus/exporters/rtl_433.nix new file mode 100644 index 00000000000..01e420db389 --- /dev/null +++ b/nixos/modules/services/monitoring/prometheus/exporters/rtl_433.nix @@ -0,0 +1,78 @@ +{ config, lib, pkgs, options }: + +let + cfg = config.services.prometheus.exporters.rtl_433; +in +{ + port = 9550; + + extraOpts = let + mkMatcherOptionType = field: description: with lib.types; + listOf (submodule { + options = { + name = lib.mkOption { + type = str; + description = "Name to match."; + }; + "${field}" = lib.mkOption { + type = int; + inherit description; + }; + location = lib.mkOption { + type = str; + description = "Location to match."; + }; + }; + }); + in + { + rtl433Flags = lib.mkOption { + type = lib.types.str; + default = "-C si"; + example = "-C si -R 19"; + description = '' + Flags passed verbatim to rtl_433 binary. + Having -C si (the default) is recommended since only Celsius temperatures are parsed. + ''; + }; + channels = lib.mkOption { + type = mkMatcherOptionType "channel" "Channel to match."; + default = []; + example = [ + { name = "Acurite"; channel = 6543; location = "Kitchen"; } + ]; + description = '' + List of channel matchers to export. + ''; + }; + ids = lib.mkOption { + type = mkMatcherOptionType "id" "ID to match."; + default = []; + example = [ + { name = "Nexus"; id = 1; location = "Bedroom"; } + ]; + description = '' + List of ID matchers to export. + ''; + }; + }; + + serviceOpts = { + serviceConfig = { + # rtl-sdr udev rules make supported USB devices +rw by plugdev. + SupplementaryGroups = "plugdev"; + ExecStart = let + matchers = (map (m: + "--channel_matcher '${m.name},${toString m.channel},${m.location}'" + ) cfg.channels) ++ (map (m: + "--id_matcher '${m.name},${toString m.id},${m.location}'" + ) cfg.ids); in '' + ${pkgs.prometheus-rtl_433-exporter}/bin/rtl_433_prometheus \ + -listen ${cfg.listenAddress}:${toString cfg.port} \ + -subprocess "${pkgs.rtl_433}/bin/rtl_433 -F json ${cfg.rtl433Flags}" \ + ${lib.concatStringsSep " \\\n " matchers} \ + ${lib.concatStringsSep " \\\n " cfg.extraFlags} + ''; + }; + }; +} diff --git a/nixos/modules/services/networking/avahi-daemon.nix b/nixos/modules/services/networking/avahi-daemon.nix index 2900c37f990..0b7d5575c11 100644 --- a/nixos/modules/services/networking/avahi-daemon.nix +++ b/nixos/modules/services/networking/avahi-daemon.nix @@ -86,7 +86,8 @@ in ipv6 = mkOption { type = types.bool; - default = false; + default = config.networking.enableIPv6; + defaultText = "config.networking.enableIPv6"; description = "Whether to use IPv6."; }; diff --git a/nixos/modules/services/networking/babeld.nix b/nixos/modules/services/networking/babeld.nix index e62c74d0069..90395dbd3c5 100644 --- a/nixos/modules/services/networking/babeld.nix +++ b/nixos/modules/services/networking/babeld.nix @@ -87,9 +87,37 @@ in description = "Babel routing daemon"; after = [ "network.target" ]; wantedBy = [ "multi-user.target" ]; - serviceConfig.ExecStart = "${pkgs.babeld}/bin/babeld -c ${configFile}"; + serviceConfig = { + ExecStart = "${pkgs.babeld}/bin/babeld -c ${configFile} -I /run/babeld/babeld.pid -S /var/lib/babeld/state"; + CapabilityBoundingSet = [ "CAP_NET_ADMIN" ]; + IPAddressAllow = [ "fe80::/64" "ff00::/8" "::1/128" "127.0.0.0/8" ]; + IPAddressDeny = "any"; + LockPersonality = true; + NoNewPrivileges = true; + MemoryDenyWriteExecute = true; + ProtectSystem = "strict"; + ProtectClock = true; + ProtectKernelTunables = false; # Couldn't write sysctl: Read-only file system + ProtectKernelModules = true; + ProtectKernelLogs = true; + ProtectControlGroups = true; + RestrictAddressFamilies = [ "AF_NETLINK" "AF_INET6" ]; + RestrictNamespaces = true; + RestrictRealtime = true; + RestrictSUIDSGID = true; + RemoveIPC = true; + ProtectHome = true; + ProtectHostname = true; + PrivateMounts = true; + PrivateTmp = true; + PrivateDevices = true; + PrivateUsers = false; # kernel_route(ADD): Operation not permitted + SystemCallArchitectures = "native"; + SystemCallFilter = [ "@system-service" ]; + UMask = "0177"; + RuntimeDirectory = "babeld"; + StateDirectory = "babeld"; + }; }; - }; - } diff --git a/nixos/modules/services/networking/blockbook-frontend.nix b/nixos/modules/services/networking/blockbook-frontend.nix index dde24522756..ca323e495ec 100644 --- a/nixos/modules/services/networking/blockbook-frontend.nix +++ b/nixos/modules/services/networking/blockbook-frontend.nix @@ -158,15 +158,21 @@ let type = types.attrs; default = {}; example = literalExample '' { - alternative_estimate_fee = "whatthefee-disabled"; - alternative_estimate_fee_params = "{\"url\": \"https://whatthefee.io/data.json\", \"periodSeconds\": 60}"; - fiat_rates = "coingecko"; - fiat_rates_params = "{\"url\": \"https://api.coingecko.com/api/v3\", \"coin\": \"bitcoin\", \"periodSeconds\": 60}"; - coin_shortcut = "BTC"; - coin_label = "Bitcoin"; - xpub_magic = 76067358; - xpub_magic_segwit_p2sh = 77429938; - xpub_magic_segwit_native = 78792518; + "alternative_estimate_fee" = "whatthefee-disabled"; + "alternative_estimate_fee_params" = "{\"url\": \"https://whatthefee.io/data.json\", \"periodSeconds\": 60}"; + "fiat_rates" = "coingecko"; + "fiat_rates_params" = "{\"url\": \"https://api.coingecko.com/api/v3\", \"coin\": \"bitcoin\", \"periodSeconds\": 60}"; + "coin_shortcut" = "BTC"; + "coin_label" = "Bitcoin"; + "parse" = true; + "subversion" = ""; + "address_format" = ""; + "xpub_magic" = 76067358; + "xpub_magic_segwit_p2sh" = 77429938; + "xpub_magic_segwit_native" = 78792518; + "mempool_workers" = 8; + "mempool_sub_workers" = 2; + "block_addresses_to_keep" = 300; }''; description = '' Additional configurations to be appended to coin.conf. diff --git a/nixos/modules/services/networking/dnscrypt-wrapper.nix b/nixos/modules/services/networking/dnscrypt-wrapper.nix index b9333cd19a2..ee7e9b0454d 100644 --- a/nixos/modules/services/networking/dnscrypt-wrapper.nix +++ b/nixos/modules/services/networking/dnscrypt-wrapper.nix @@ -55,7 +55,10 @@ let rotateKeys = '' # check if keys are not expired keyValid() { - fingerprint=$(dnscrypt-wrapper --show-provider-publickey | awk '{print $(NF)}') + fingerprint=$(dnscrypt-wrapper \ + --show-provider-publickey \ + --provider-publickey-file=${publicKey} \ + | awk '{print $(NF)}') dnscrypt-proxy --test=${toString (cfg.keys.checkInterval + 1)} \ --resolver-address=127.0.0.1:${toString cfg.port} \ --provider-name=${cfg.providerName} \ diff --git a/nixos/modules/services/networking/mosquitto.nix b/nixos/modules/services/networking/mosquitto.nix index d2feb93e2b7..4a85b3956da 100644 --- a/nixos/modules/services/networking/mosquitto.nix +++ b/nixos/modules/services/networking/mosquitto.nix @@ -123,12 +123,33 @@ in ''; }; + passwordFile = mkOption { + type = with types; uniq (nullOr str); + example = "/path/to/file"; + default = null; + description = '' + Specifies the path to a file containing the + clear text password for the MQTT user. + ''; + }; + hashedPassword = mkOption { type = with types; uniq (nullOr str); default = null; description = '' Specifies the hashed password for the MQTT User. - overrides . + To generate hashed password install mosquitto + package and use mosquitto_passwd. + ''; + }; + + hashedPasswordFile = mkOption { + type = with types; uniq (nullOr str); + example = "/path/to/file"; + default = null; + description = '' + Specifies the path to a file containing the + hashed password for the MQTT user. To generate hashed password install mosquitto package and use mosquitto_passwd. ''; @@ -190,6 +211,13 @@ in config = mkIf cfg.enable { + assertions = mapAttrsToList (name: cfg: { + assertion = length (filter (s: s != null) (with cfg; [ + password passwordFile hashedPassword hashedPasswordFile + ])) <= 1; + message = "Cannot set more than one password option"; + }) cfg.users; + systemd.services.mosquitto = { description = "Mosquitto MQTT Broker Daemon"; wantedBy = [ "multi-user.target" ]; @@ -210,7 +238,11 @@ in touch ${cfg.dataDir}/passwd '' + concatStringsSep "\n" ( mapAttrsToList (n: c: - if c.hashedPassword != null then + if c.hashedPasswordFile != null then + "echo '${n}:'$(cat '${c.hashedPasswordFile}') >> ${cfg.dataDir}/passwd" + else if c.passwordFile != null then + "${pkgs.mosquitto}/bin/mosquitto_passwd -b ${cfg.dataDir}/passwd ${n} $(cat '${c.passwordFile}')" + else if c.hashedPassword != null then "echo '${n}:${c.hashedPassword}' >> ${cfg.dataDir}/passwd" else optionalString (c.password != null) "${pkgs.mosquitto}/bin/mosquitto_passwd -b ${cfg.dataDir}/passwd ${n} '${c.password}'" diff --git a/nixos/modules/services/networking/murmur.nix b/nixos/modules/services/networking/murmur.nix index b384f436861..c6e5649ec47 100644 --- a/nixos/modules/services/networking/murmur.nix +++ b/nixos/modules/services/networking/murmur.nix @@ -278,6 +278,10 @@ in home = "/var/lib/murmur"; createHome = true; uid = config.ids.uids.murmur; + group = "murmur"; + }; + users.groups.murmur = { + gid = config.ids.gids.murmur; }; systemd.services.murmur = { @@ -300,6 +304,7 @@ in RuntimeDirectory = "murmur"; RuntimeDirectoryMode = "0700"; User = "murmur"; + Group = "murmur"; }; }; }; diff --git a/nixos/modules/services/networking/networkmanager.nix b/nixos/modules/services/networking/networkmanager.nix index 17c549d42c3..201a51ff70b 100644 --- a/nixos/modules/services/networking/networkmanager.nix +++ b/nixos/modules/services/networking/networkmanager.nix @@ -15,6 +15,7 @@ let networkmanager-openconnect networkmanager-openvpn networkmanager-vpnc + networkmanager-sstp ] ++ optional (!delegateWireless && !enableIwd) wpa_supplicant; delegateWireless = config.networking.wireless.enable == true && cfg.unmanaged != []; @@ -386,6 +387,9 @@ in { "NetworkManager/VPN/nm-iodine-service.name".source = "${networkmanager-iodine}/lib/NetworkManager/VPN/nm-iodine-service.name"; + + "NetworkManager/VPN/nm-sstp-service.name".source = + "${networkmanager-sstp}/lib/NetworkManager/VPN/nm-sstp-service.name"; } // optionalAttrs (cfg.appendNameservers != [] || cfg.insertNameservers != []) { diff --git a/nixos/modules/services/networking/pdns-recursor.nix b/nixos/modules/services/networking/pdns-recursor.nix index 6ff181377fc..a326eccfd65 100644 --- a/nixos/modules/services/networking/pdns-recursor.nix +++ b/nixos/modules/services/networking/pdns-recursor.nix @@ -3,9 +3,6 @@ with lib; let - dataDir = "/var/lib/pdns-recursor"; - username = "pdns-recursor"; - cfg = config.services.pdns-recursor; oneOrMore = type: with types; either type (listOf type); @@ -21,7 +18,7 @@ let else if builtins.isList val then (concatMapStringsSep "," serialize val) else ""; - configFile = pkgs.writeText "recursor.conf" + configDir = pkgs.writeTextDir "recursor.conf" (concatStringsSep "\n" (flip mapAttrsToList cfg.settings (name: val: "${name}=${serialize val}"))); @@ -173,45 +170,30 @@ in { serve-rfc1918 = cfg.serveRFC1918; lua-config-file = pkgs.writeText "recursor.lua" cfg.luaConfig; + daemon = false; + write-pid = false; log-timestamp = false; disable-syslog = true; }; - users.users.${username} = { - home = dataDir; - createHome = true; - uid = config.ids.uids.pdns-recursor; + systemd.packages = [ pkgs.pdns-recursor ]; + + systemd.services.pdns-recursor = { + wantedBy = [ "multi-user.target" ]; + + serviceConfig = { + ExecStart = [ "" "${pkgs.pdns-recursor}/bin/pdns_recursor --config-dir=${configDir}" ]; + }; + }; + + users.users.pdns-recursor = { + isSystemUser = true; + group = "pdns-recursor"; description = "PowerDNS Recursor daemon user"; }; - systemd.services.pdns-recursor = { - unitConfig.Documentation = "man:pdns_recursor(1) man:rec_control(1)"; - description = "PowerDNS recursive server"; - wantedBy = [ "multi-user.target" ]; - after = [ "network.target" ]; + users.groups.pdns-recursor = {}; - serviceConfig = { - User = username; - Restart ="on-failure"; - RestartSec = "5"; - PrivateTmp = true; - PrivateDevices = true; - AmbientCapabilities = "cap_net_bind_service"; - ExecStart = ''${pkgs.pdns-recursor}/bin/pdns_recursor \ - --config-dir=${dataDir} \ - --socket-dir=${dataDir} - ''; - }; - - preStart = '' - # Link configuration file into recursor home directory - configPath=${dataDir}/recursor.conf - if [ "$(realpath $configPath)" != "${configFile}" ]; then - rm -f $configPath - ln -s ${configFile} $configPath - fi - ''; - }; }; imports = [ diff --git a/nixos/modules/services/networking/powerdns.nix b/nixos/modules/services/networking/powerdns.nix index ba05e15389f..8cae61b8354 100644 --- a/nixos/modules/services/networking/powerdns.nix +++ b/nixos/modules/services/networking/powerdns.nix @@ -8,42 +8,40 @@ let in { options = { services.powerdns = { - enable = mkEnableOption "Powerdns domain name server"; + enable = mkEnableOption "PowerDNS domain name server"; extraConfig = mkOption { type = types.lines; default = "launch=bind"; description = '' - Extra lines to be added verbatim to pdns.conf. - Powerdns will chroot to /var/lib/powerdns. - So any file, powerdns is supposed to be read, - should be in /var/lib/powerdns and needs to specified - relative to the chroot. + PowerDNS configuration. Refer to + + for details on supported values. ''; }; }; }; - config = mkIf config.services.powerdns.enable { + config = mkIf cfg.enable { + + systemd.packages = [ pkgs.powerdns ]; + systemd.services.pdns = { - unitConfig.Documentation = "man:pdns_server(1) man:pdns_control(1)"; - description = "Powerdns name server"; wantedBy = [ "multi-user.target" ]; - after = ["network.target" "mysql.service" "postgresql.service" "openldap.service"]; + after = [ "network.target" "mysql.service" "postgresql.service" "openldap.service" ]; serviceConfig = { - Restart="on-failure"; - RestartSec="1"; - StartLimitInterval="0"; - PrivateDevices=true; - CapabilityBoundingSet="CAP_CHOWN CAP_NET_BIND_SERVICE CAP_SETGID CAP_SETUID CAP_SYS_CHROOT"; - NoNewPrivileges=true; - ExecStartPre = "${pkgs.coreutils}/bin/mkdir -p /var/lib/powerdns"; - ExecStart = "${pkgs.powerdns}/bin/pdns_server --setuid=nobody --setgid=nogroup --chroot=/var/lib/powerdns --socket-dir=/ --daemon=no --guardian=no --disable-syslog --write-pid=no --config-dir=${configDir}"; - ProtectSystem="full"; - ProtectHome=true; - RestrictAddressFamilies="AF_UNIX AF_INET AF_INET6"; + ExecStart = [ "" "${pkgs.powerdns}/bin/pdns_server --config-dir=${configDir} --guardian=no --daemon=no --disable-syslog --log-timestamp=no --write-pid=no" ]; }; }; + + users.users.pdns = { + isSystemUser = true; + group = "pdns"; + description = "PowerDNS"; + }; + + users.groups.pdns = {}; + }; } diff --git a/nixos/modules/services/networking/prosody.nix b/nixos/modules/services/networking/prosody.nix index a6c1cb0f479..e7a7aa700be 100644 --- a/nixos/modules/services/networking/prosody.nix +++ b/nixos/modules/services/networking/prosody.nix @@ -261,7 +261,7 @@ let toLua = x: if builtins.isString x then ''"${x}"'' - else if builtins.isBool x then (if x == true then "true" else "false") + else if builtins.isBool x then boolToString x else if builtins.isInt x then toString x else if builtins.isList x then ''{ ${lib.concatStringsSep ", " (map (n: toLua n) x) } }'' else throw "Invalid Lua value"; diff --git a/nixos/modules/services/networking/ssh/sshd.nix b/nixos/modules/services/networking/ssh/sshd.nix index 5365b8b9b10..1b745931c4f 100644 --- a/nixos/modules/services/networking/ssh/sshd.nix +++ b/nixos/modules/services/networking/ssh/sshd.nix @@ -269,6 +269,7 @@ in kexAlgorithms = mkOption { type = types.listOf types.str; default = [ + "curve25519-sha256" "curve25519-sha256@libssh.org" "diffie-hellman-group-exchange-sha256" ]; @@ -279,7 +280,7 @@ in Defaults to recommended settings from both and - + ''; }; @@ -300,7 +301,7 @@ in Defaults to recommended settings from both and - + ''; }; @@ -321,7 +322,7 @@ in Defaults to recommended settings from both and - + ''; }; diff --git a/nixos/modules/services/networking/sslh.nix b/nixos/modules/services/networking/sslh.nix index 0921febba66..4c2740d2019 100644 --- a/nixos/modules/services/networking/sslh.nix +++ b/nixos/modules/services/networking/sslh.nix @@ -31,7 +31,7 @@ let { name: "openvpn"; host: "localhost"; port: "1194"; probe: "builtin"; }, { name: "xmpp"; host: "localhost"; port: "5222"; probe: "builtin"; }, { name: "http"; host: "localhost"; port: "80"; probe: "builtin"; }, - { name: "ssl"; host: "localhost"; port: "443"; probe: "builtin"; }, + { name: "tls"; host: "localhost"; port: "443"; probe: "builtin"; }, { name: "anyprot"; host: "localhost"; port: "443"; probe: "builtin"; } ); ''; diff --git a/nixos/modules/services/security/fail2ban.nix b/nixos/modules/services/security/fail2ban.nix index 3f84f9c2560..cf0d72d5c53 100644 --- a/nixos/modules/services/security/fail2ban.nix +++ b/nixos/modules/services/security/fail2ban.nix @@ -282,12 +282,12 @@ in services.fail2ban.jails.DEFAULT = '' ${optionalString cfg.bantime-increment.enable '' # Bantime incremental - bantime.increment = ${if cfg.bantime-increment.enable then "true" else "false"} + bantime.increment = ${boolToString cfg.bantime-increment.enable} bantime.maxtime = ${cfg.bantime-increment.maxtime} bantime.factor = ${cfg.bantime-increment.factor} bantime.formula = ${cfg.bantime-increment.formula} bantime.multipliers = ${cfg.bantime-increment.multipliers} - bantime.overalljails = ${if cfg.bantime-increment.overalljails then "true" else "false"} + bantime.overalljails = ${boolToString cfg.bantime-increment.overalljails} ''} # Miscellaneous options ignoreip = 127.0.0.1/8 ${optionalString config.networking.enableIPv6 "::1"} ${concatStringsSep " " cfg.ignoreIP} diff --git a/nixos/modules/services/security/usbguard.nix b/nixos/modules/services/security/usbguard.nix index 16a90da5231..71fd71a2cab 100644 --- a/nixos/modules/services/security/usbguard.nix +++ b/nixos/modules/services/security/usbguard.nix @@ -19,13 +19,13 @@ let PresentDevicePolicy=${cfg.presentDevicePolicy} PresentControllerPolicy=${cfg.presentControllerPolicy} InsertedDevicePolicy=${cfg.insertedDevicePolicy} - RestoreControllerDeviceState=${if cfg.restoreControllerDeviceState then "true" else "false"} + RestoreControllerDeviceState=${boolToString cfg.restoreControllerDeviceState} # this does not seem useful for endusers to change DeviceManagerBackend=uevent IPCAllowedUsers=${concatStringsSep " " cfg.IPCAllowedUsers} IPCAllowedGroups=${concatStringsSep " " cfg.IPCAllowedGroups} IPCAccessControlFiles=/var/lib/usbguard/IPCAccessControl.d/ - DeviceRulesWithPort=${if cfg.deviceRulesWithPort then "true" else "false"} + DeviceRulesWithPort=${boolToString cfg.deviceRulesWithPort} # HACK: that way audit logs still land in the journal AuditFilePath=/dev/null ''; diff --git a/nixos/modules/services/system/dbus.nix b/nixos/modules/services/system/dbus.nix index 4a60fec1ca8..f8d909a4a3c 100644 --- a/nixos/modules/services/system/dbus.nix +++ b/nixos/modules/services/system/dbus.nix @@ -1,6 +1,6 @@ # D-Bus configuration and system bus daemon. -{ config, lib, pkgs, ... }: +{ config, lib, options, pkgs, ... }: with lib; @@ -18,7 +18,6 @@ let in { - ###### interface options = { @@ -53,10 +52,11 @@ in }; socketActivated = mkOption { - type = types.bool; - default = false; + type = types.nullOr types.bool; + default = null; + visible = false; description = '' - Make the user instance socket activated. + Removed option, do not use. ''; }; }; @@ -65,6 +65,14 @@ in ###### implementation config = mkIf cfg.enable { + warnings = optional (cfg.socketActivated != null) ( + let + files = showFiles options.services.dbus.socketActivated.files; + in + "The option 'services.dbus.socketActivated' in ${files} no longer has" + + " any effect and can be safely removed: the user D-Bus session is" + + " now always socket activated." + ); environment.systemPackages = [ pkgs.dbus.daemon pkgs.dbus ]; @@ -108,7 +116,7 @@ in reloadIfChanged = true; restartTriggers = [ configDir ]; }; - sockets.dbus.wantedBy = mkIf cfg.socketActivated [ "sockets.target" ]; + sockets.dbus.wantedBy = [ "sockets.target" ]; }; environment.pathsToLink = [ "/etc/dbus-1" "/share/dbus-1" ]; diff --git a/nixos/modules/services/web-apps/engelsystem.nix b/nixos/modules/services/web-apps/engelsystem.nix index 899582a2030..2e755ae9d52 100644 --- a/nixos/modules/services/web-apps/engelsystem.nix +++ b/nixos/modules/services/web-apps/engelsystem.nix @@ -10,7 +10,7 @@ in { default = false; example = true; description = '' - Whether to enable engelsystem, an online tool for coordinating helpers + Whether to enable engelsystem, an online tool for coordinating volunteers and shifts on large events. ''; type = lib.types.bool; diff --git a/nixos/modules/services/web-apps/icingaweb2/icingaweb2.nix b/nixos/modules/services/web-apps/icingaweb2/icingaweb2.nix index d9ad7e9e3d3..eea49bda283 100644 --- a/nixos/modules/services/web-apps/icingaweb2/icingaweb2.nix +++ b/nixos/modules/services/web-apps/icingaweb2/icingaweb2.nix @@ -167,8 +167,8 @@ in { services.phpfpm.pools = mkIf (cfg.pool == "${poolName}") { ${poolName} = { user = "icingaweb2"; + phpPackage = pkgs.php.withExtensions ({ enabled, all }: [ all.imagick ] ++ enabled); phpOptions = '' - extension = ${pkgs.phpPackages.imagick}/lib/php/extensions/imagick.so date.timezone = "${cfg.timezone}" ''; settings = mapAttrs (name: mkDefault) { diff --git a/nixos/modules/services/web-apps/shiori.nix b/nixos/modules/services/web-apps/shiori.nix index 1817a203935..9083ddfa220 100644 --- a/nixos/modules/services/web-apps/shiori.nix +++ b/nixos/modules/services/web-apps/shiori.nix @@ -37,11 +37,60 @@ in { description = "Shiori simple bookmarks manager"; wantedBy = [ "multi-user.target" ]; + environment.SHIORI_DIR = "/var/lib/shiori"; + serviceConfig = { ExecStart = "${package}/bin/shiori serve --address '${address}' --port '${toString port}'"; + DynamicUser = true; - Environment = "SHIORI_DIR=/var/lib/shiori"; StateDirectory = "shiori"; + # As the RootDirectory + RuntimeDirectory = "shiori"; + + # Security options + + BindReadOnlyPaths = [ + "/nix/store" + + # For SSL certificates, and the resolv.conf + "/etc" + ]; + + CapabilityBoundingSet = ""; + + DeviceAllow = ""; + + LockPersonality = true; + + MemoryDenyWriteExecute = true; + + PrivateDevices = true; + PrivateUsers = true; + + ProtectClock = true; + ProtectControlGroups = true; + ProtectHome = true; + ProtectHostname = true; + ProtectKernelLogs = true; + ProtectKernelModules = true; + ProtectKernelTunables = true; + + RestrictNamespaces = true; + RestrictAddressFamilies = [ "AF_INET" "AF_INET6" ]; + RestrictRealtime = true; + RestrictSUIDSGID = true; + + RootDirectory = "/run/shiori"; + + SystemCallArchitectures = "native"; + SystemCallErrorNumber = "EPERM"; + SystemCallFilter = [ + "@system-service" + + "~@chown" "~@cpu-emulation" "~@debug" "~@ipc" "~@keyring" "~@memlock" + "~@module" "~@obsolete" "~@privileged" "~@process" "~@raw-io" + "~@resources" "~@setuid" + ]; }; }; }; diff --git a/nixos/modules/services/web-servers/nginx/default.nix b/nixos/modules/services/web-servers/nginx/default.nix index 39bcb14e5af..631e92fd6e9 100644 --- a/nixos/modules/services/web-servers/nginx/default.nix +++ b/nixos/modules/services/web-servers/nginx/default.nix @@ -34,7 +34,6 @@ let proxy_set_header X-Forwarded-Proto $scheme; proxy_set_header X-Forwarded-Host $host; proxy_set_header X-Forwarded-Server $host; - proxy_set_header Accept-Encoding ""; ''; upstreamConfig = toString (flip mapAttrsToList cfg.upstreams (name: upstream: '' @@ -87,7 +86,7 @@ let ''} ssl_protocols ${cfg.sslProtocols}; - ssl_ciphers ${cfg.sslCiphers}; + ${optionalString (cfg.sslCiphers != null) "ssl_ciphers ${cfg.sslCiphers};"} ${optionalString (cfg.sslDhparam != null) "ssl_dhparam ${cfg.sslDhparam};"} ${optionalString (cfg.recommendedTlsSettings) '' @@ -488,7 +487,7 @@ in }; sslCiphers = mkOption { - type = types.str; + type = types.nullOr types.str; # Keep in sync with https://ssl-config.mozilla.org/#server=nginx&config=intermediate default = "ECDHE-ECDSA-AES128-GCM-SHA256:ECDHE-RSA-AES128-GCM-SHA256:ECDHE-ECDSA-AES256-GCM-SHA384:ECDHE-RSA-AES256-GCM-SHA384:ECDHE-ECDSA-CHACHA20-POLY1305:ECDHE-RSA-CHACHA20-POLY1305:DHE-RSA-AES128-GCM-SHA256:DHE-RSA-AES256-GCM-SHA384"; description = "Ciphers to choose from when negotiating TLS handshakes."; diff --git a/nixos/modules/services/x11/desktop-managers/gnome3.nix b/nixos/modules/services/x11/desktop-managers/gnome3.nix index acccbdb9950..9dfac56c7fe 100644 --- a/nixos/modules/services/x11/desktop-managers/gnome3.nix +++ b/nixos/modules/services/x11/desktop-managers/gnome3.nix @@ -17,6 +17,11 @@ let ''; }; + defaultFavoriteAppsOverride = '' + [org.gnome.shell] + favorite-apps=[ 'org.gnome.Geary.desktop', 'org.gnome.Calendar.desktop', 'org.gnome.Music.desktop', 'org.gnome.Photos.desktop', 'org.gnome.Nautilus.desktop' ] + ''; + nixos-gsettings-desktop-schemas = let defaultPackages = with pkgs; [ gsettings-desktop-schemas gnome3.gnome-shell ]; in @@ -42,8 +47,7 @@ let [org.gnome.desktop.screensaver] picture-uri='file://${pkgs.nixos-artwork.wallpapers.simple-dark-gray-bottom.gnomeFilePath}' - [org.gnome.shell] - favorite-apps=[ 'org.gnome.Epiphany.desktop', 'org.gnome.Geary.desktop', 'org.gnome.Music.desktop', 'org.gnome.Photos.desktop', 'org.gnome.Nautilus.desktop', 'org.gnome.Software.desktop' ] + ${cfg.favoriteAppsOverride} ${cfg.extraGSettingsOverrides} EOF @@ -123,6 +127,17 @@ in apply = list: list ++ [ pkgs.gnome3.gnome-shell pkgs.gnome3.gnome-shell-extensions ]; }; + favoriteAppsOverride = mkOption { + internal = true; # this is messy + default = defaultFavoriteAppsOverride; + type = types.lines; + example = literalExample '' + [org.gnome.shell] + favorite-apps=[ 'firefox.desktop', 'org.gnome.Calendar.desktop' ] + ''; + description = "List of desktop files to put as favorite apps into gnome-shell. These need to be installed somehow globally."; + }; + extraGSettingsOverrides = mkOption { default = ""; type = types.lines; @@ -179,6 +194,14 @@ in config = mkMerge [ (mkIf (cfg.enable || flashbackEnabled) { + # Seed our configuration into nixos-generate-config + system.nixos-generate-config.desktopConfiguration = '' + # Enable the GNOME 3 Desktop Environment. + services.xserver.enable = true; + services.xserver.displayManager.gdm.enable = true; + services.xserver.desktopManager.gnome3.enable = true; + ''; + services.gnome3.core-os-services.enable = true; services.gnome3.core-shell.enable = true; services.gnome3.core-utilities.enable = mkDefault true; @@ -207,6 +230,11 @@ in # If gnome3 is installed, build vim for gtk3 too. nixpkgs.config.vim.gui = "gtk3"; + + # Install gnome-software if flatpak is enabled + services.flatpak.guiPackages = [ + pkgs.gnome3.gnome-software + ]; }) (mkIf flashbackEnabled { @@ -389,7 +417,6 @@ in gnome-music gnome-photos gnome-screenshot - gnome-software gnome-system-monitor gnome-weather nautilus diff --git a/nixos/modules/services/x11/desktop-managers/pantheon.nix b/nixos/modules/services/x11/desktop-managers/pantheon.nix index e67e216f90d..cf02a71248b 100644 --- a/nixos/modules/services/x11/desktop-managers/pantheon.nix +++ b/nixos/modules/services/x11/desktop-managers/pantheon.nix @@ -180,7 +180,6 @@ in gtk3.out hicolor-icon-theme lightlocker - nixos-artwork.wallpapers.simple-dark-gray onboard qgnomeplatform shared-mime-info diff --git a/nixos/modules/services/x11/desktop-managers/plasma5.nix b/nixos/modules/services/x11/desktop-managers/plasma5.nix index e48b5f23b58..ad0385ddeed 100644 --- a/nixos/modules/services/x11/desktop-managers/plasma5.nix +++ b/nixos/modules/services/x11/desktop-managers/plasma5.nix @@ -184,6 +184,14 @@ in config = mkMerge [ (mkIf cfg.enable { + # Seed our configuration into nixos-generate-config + system.nixos-generate-config.desktopConfiguration = '' + # Enable the Plasma 5 Desktop Environment. + services.xserver.enable = true; + services.xserver.displayManager.sddm.enable = true; + services.xserver.desktopManager.plasma5.enable = true; + ''; + services.xserver.desktopManager.session = singleton { name = "plasma5"; bgSupport = true; diff --git a/nixos/modules/services/x11/display-managers/default.nix b/nixos/modules/services/x11/display-managers/default.nix index 8ac7a9e66c6..6945a241f92 100644 --- a/nixos/modules/services/x11/display-managers/default.nix +++ b/nixos/modules/services/x11/display-managers/default.nix @@ -37,13 +37,6 @@ let . /etc/profile cd "$HOME" - ${optionalString cfg.startDbusSession '' - if test -z "$DBUS_SESSION_BUS_ADDRESS"; then - /run/current-system/systemd/bin/systemctl --user start dbus.socket - export `/run/current-system/systemd/bin/systemctl --user show-environment | grep '^DBUS_SESSION_BUS_ADDRESS'` - fi - ''} - ${optionalString cfg.displayManager.job.logToJournal '' if [ -z "$_DID_SYSTEMD_CAT" ]; then export _DID_SYSTEMD_CAT=1 @@ -482,11 +475,10 @@ in [dms wms] ); - # Make xsessions and wayland sessions installed at - # /run/current-system/sw/share as some programs - # have behavior that depends on them being installed - environment.systemPackages = [ - cfg.displayManager.sessionData.desktops + # Make xsessions and wayland sessions available in XDG_DATA_DIRS + # as some programs have behavior that depends on them being present + environment.sessionVariables.XDG_DATA_DIRS = [ + "${cfg.displayManager.sessionData.desktops}/share" ]; }; diff --git a/nixos/modules/services/x11/display-managers/gdm.nix b/nixos/modules/services/x11/display-managers/gdm.nix index eae70a57c78..25b424e485f 100644 --- a/nixos/modules/services/x11/display-managers/gdm.nix +++ b/nixos/modules/services/x11/display-managers/gdm.nix @@ -264,7 +264,7 @@ in # presented and there's a little delay. environment.etc."gdm/custom.conf".text = '' [daemon] - WaylandEnable=${if cfg.gdm.wayland then "true" else "false"} + WaylandEnable=${boolToString cfg.gdm.wayland} ${optionalString cfg.autoLogin.enable ( if cfg.gdm.autoLogin.delay > 0 then '' TimedLoginEnable=true diff --git a/nixos/modules/services/x11/display-managers/lightdm.nix b/nixos/modules/services/x11/display-managers/lightdm.nix index 143785db0b4..2dafee9e36e 100644 --- a/nixos/modules/services/x11/display-managers/lightdm.nix +++ b/nixos/modules/services/x11/display-managers/lightdm.nix @@ -308,6 +308,7 @@ in home = "/var/lib/lightdm"; group = "lightdm"; uid = config.ids.uids.lightdm; + shell = pkgs.bash; }; systemd.tmpfiles.rules = [ diff --git a/nixos/modules/services/x11/display-managers/sddm.nix b/nixos/modules/services/x11/display-managers/sddm.nix index e63bb2e4453..4040b903426 100644 --- a/nixos/modules/services/x11/display-managers/sddm.nix +++ b/nixos/modules/services/x11/display-managers/sddm.nix @@ -55,10 +55,10 @@ let XauthPath=${pkgs.xorg.xauth}/bin/xauth DisplayCommand=${Xsetup} DisplayStopCommand=${Xstop} - EnableHidpi=${if cfg.enableHidpi then "true" else "false"} + EnableHidpi=${boolToString cfg.enableHidpi} [Wayland] - EnableHidpi=${if cfg.enableHidpi then "true" else "false"} + EnableHidpi=${boolToString cfg.enableHidpi} SessionDir=${dmcfg.sessionData.desktops}/share/wayland-sessions ${optionalString dmcfg.autoLogin.enable '' diff --git a/nixos/modules/services/x11/xserver.nix b/nixos/modules/services/x11/xserver.nix index 1bbcd4ca2ab..55d3e742ef7 100644 --- a/nixos/modules/services/x11/xserver.nix +++ b/nixos/modules/services/x11/xserver.nix @@ -152,6 +152,9 @@ in ./desktop-managers/default.nix (mkRemovedOptionModule [ "services" "xserver" "startGnuPGAgent" ] "See the 16.09 release notes for more information.") + (mkRemovedOptionModule + [ "services" "xserver" "startDbusSession" ] + "The user D-Bus session is now always socket activated and this option can safely be removed.") (mkRemovedOptionModule ["services" "xserver" "useXFS" ] "Use services.xserver.fontPath instead of useXFS") ]; @@ -299,14 +302,6 @@ in description = "DPI resolution to use for X server."; }; - startDbusSession = mkOption { - type = types.bool; - default = true; - description = '' - Whether to start a new DBus session when you log in with dbus-launch. - ''; - }; - updateDbusEnvironment = mkOption { type = types.bool; default = false; diff --git a/nixos/modules/system/boot/grow-partition.nix b/nixos/modules/system/boot/grow-partition.nix index 71a86c74772..be70c4ad9c8 100644 --- a/nixos/modules/system/boot/grow-partition.nix +++ b/nixos/modules/system/boot/grow-partition.nix @@ -23,7 +23,7 @@ with lib; copy_bin_and_libs ${pkgs.utillinux}/sbin/sfdisk copy_bin_and_libs ${pkgs.utillinux}/sbin/lsblk - substitute "${pkgs.cloud-utils}/bin/.growpart-wrapped" "$out/bin/growpart" \ + substitute "${pkgs.cloud-utils.guest}/bin/.growpart-wrapped" "$out/bin/growpart" \ --replace "${pkgs.bash}/bin/sh" "/bin/sh" \ --replace "awk" "gawk" \ --replace "sed" "gnused" diff --git a/nixos/modules/system/boot/initrd-network.nix b/nixos/modules/system/boot/initrd-network.nix index ec794d6eb01..2a7417ed371 100644 --- a/nixos/modules/system/boot/initrd-network.nix +++ b/nixos/modules/system/boot/initrd-network.nix @@ -32,8 +32,8 @@ let fi if [ -n "$dns" ]; then rm -f /etc/resolv.conf - for i in $dns; do - echo "nameserver $dns" >> /etc/resolv.conf + for server in $dns; do + echo "nameserver $server" >> /etc/resolv.conf done fi fi diff --git a/nixos/modules/system/boot/loader/systemd-boot/systemd-boot-builder.py b/nixos/modules/system/boot/loader/systemd-boot/systemd-boot-builder.py index 65c7b825f85..97e824fe629 100644 --- a/nixos/modules/system/boot/loader/systemd-boot/systemd-boot-builder.py +++ b/nixos/modules/system/boot/loader/systemd-boot/systemd-boot-builder.py @@ -200,9 +200,7 @@ def main(): else: # Update bootloader to latest if needed systemd_version = subprocess.check_output(["@systemd@/bin/bootctl", "--version"], universal_newlines=True).split()[1] - # Ideally this should use check_output as well, but as a temporary - # work-around for #97433 we ignore any errors. - sdboot_status = subprocess.run(["@systemd@/bin/bootctl", "--path=@efiSysMountPoint@", "status"], universal_newlines=True, stdout=subprocess.PIPE).stdout + sdboot_status = subprocess.check_output(["@systemd@/bin/bootctl", "--path=@efiSysMountPoint@", "status"], universal_newlines=True) # See status_binaries() in systemd bootctl.c for code which generates this m = re.search("^\W+File:.*/EFI/(BOOT|systemd)/.*\.efi \(systemd-boot (\d+)\)$", diff --git a/nixos/modules/system/boot/networkd.nix b/nixos/modules/system/boot/networkd.nix index 47689b2a470..3b01bc00baf 100644 --- a/nixos/modules/system/boot/networkd.nix +++ b/nixos/modules/system/boot/networkd.nix @@ -648,11 +648,13 @@ let "RapidCommit" "ForceDHCPv6PDOtherInformation" "PrefixDelegationHint" + "RouteMetric" ]) (assertValueOneOf "UseDNS" boolValues) (assertValueOneOf "UseNTP" boolValues) (assertValueOneOf "RapidCommit" boolValues) (assertValueOneOf "ForceDHCPv6PDOtherInformation" boolValues) + (assertInt "RouteMetric") ]; sectionDHCPServer = checkUnitConfig "DHCPServer" [ diff --git a/nixos/modules/testing/test-instrumentation.nix b/nixos/modules/testing/test-instrumentation.nix index c0ec76e8a3a..be5fa88b8ad 100644 --- a/nixos/modules/testing/test-instrumentation.nix +++ b/nixos/modules/testing/test-instrumentation.nix @@ -45,13 +45,22 @@ with import ../../lib/qemu-flags.nix { inherit pkgs; }; systemd.services."serial-getty@${qemuSerialDevice}".enable = false; systemd.services."serial-getty@hvc0".enable = false; - # Only use a serial console, no TTY. - # NOTE: optionalAttrs - # test-instrumentation.nix appears to be used without qemu-vm.nix, so - # we avoid defining consoles if not possible. - # TODO: refactor such that test-instrumentation can import qemu-vm - # or declare virtualisation.qemu.console option in a module that's always imported - virtualisation = lib.optionalAttrs (options ? virtualisation.qemu.consoles) { qemu.consoles = [ qemuSerialDevice ]; }; + # Only set these settings when the options exist. Some tests (e.g. those + # that do not specify any nodes, or an empty attr set as nodes) will not + # have the QEMU module loaded and thuse these options can't and should not + # be set. + virtualisation = lib.optionalAttrs (options ? virtualisation.qemu) { + qemu = { + # Only use a serial console, no TTY. + # NOTE: optionalAttrs + # test-instrumentation.nix appears to be used without qemu-vm.nix, so + # we avoid defining consoles if not possible. + # TODO: refactor such that test-instrumentation can import qemu-vm + # or declare virtualisation.qemu.console option in a module that's always imported + consoles = [ qemuSerialDevice ]; + package = lib.mkDefault pkgs.qemu_test; + }; + }; boot.initrd.preDeviceCommands = '' @@ -116,6 +125,10 @@ with import ../../lib/qemu-flags.nix { inherit pkgs; }; users.users.root.initialHashedPassword = mkOverride 150 ""; services.xserver.displayManager.job.logToJournal = true; + + # Make sure we use the Guest Agent from the QEMU package for testing + # to reduce the closure size required for the tests. + services.qemuGuest.package = pkgs.qemu_test.ga; }; } diff --git a/nixos/modules/virtualisation/ec2-amis.nix b/nixos/modules/virtualisation/ec2-amis.nix index 24de8cf1afb..4d9c391e046 100644 --- a/nixos/modules/virtualisation/ec2-amis.nix +++ b/nixos/modules/virtualisation/ec2-amis.nix @@ -329,5 +329,24 @@ let self = { "20.03".ap-east-1.hvm-ebs = "ami-0d18fdd309cdefa86"; "20.03".sa-east-1.hvm-ebs = "ami-09859378158ae971d"; - latest = self."20.03"; + # 20.09.1465.9a0b14b097d + "20.09".eu-west-1.hvm-ebs = "ami-0d90f16418e3c364c"; + "20.09".eu-west-2.hvm-ebs = "ami-0635ec0780ea57cfe"; + "20.09".eu-west-3.hvm-ebs = "ami-0714e94352f2eabb9"; + "20.09".eu-central-1.hvm-ebs = "ami-0979d39762a4d2a02"; + "20.09".eu-north-1.hvm-ebs = "ami-0b14e273185c66e9b"; + "20.09".us-east-1.hvm-ebs = "ami-0f8b063ac3f2d9645"; + "20.09".us-east-2.hvm-ebs = "ami-0959202a0393fdd0c"; + "20.09".us-west-1.hvm-ebs = "ami-096d50833b785478b"; + "20.09".us-west-2.hvm-ebs = "ami-0fc31031df0df6104"; + "20.09".ca-central-1.hvm-ebs = "ami-0787786a38cde3905"; + "20.09".ap-southeast-1.hvm-ebs = "ami-0b3f693d3a2a0b9ae"; + "20.09".ap-southeast-2.hvm-ebs = "ami-02471872bc876b610"; + "20.09".ap-northeast-1.hvm-ebs = "ami-06505fd2bf44a59a7"; + "20.09".ap-northeast-2.hvm-ebs = "ami-0754b4c014eea1e8a"; + "20.09".ap-south-1.hvm-ebs = "ami-05100e32242ae65a6"; + "20.09".ap-east-1.hvm-ebs = "ami-045288859a39de009"; + "20.09".sa-east-1.hvm-ebs = "ami-0a937748db48fb00d"; + + latest = self."20.09"; }; in self diff --git a/nixos/modules/virtualisation/qemu-guest-agent.nix b/nixos/modules/virtualisation/qemu-guest-agent.nix index 665224e35d8..6a735f451a7 100644 --- a/nixos/modules/virtualisation/qemu-guest-agent.nix +++ b/nixos/modules/virtualisation/qemu-guest-agent.nix @@ -12,6 +12,11 @@ in { default = false; description = "Whether to enable the qemu guest agent."; }; + package = mkOption { + type = types.package; + default = pkgs.qemu.ga; + description = "The QEMU guest agent package."; + }; }; config = mkIf cfg.enable ( @@ -25,7 +30,7 @@ in { systemd.services.qemu-guest-agent = { description = "Run the QEMU Guest Agent"; serviceConfig = { - ExecStart = "${pkgs.qemu.ga}/bin/qemu-ga"; + ExecStart = "${cfg.package}/bin/qemu-ga"; Restart = "always"; RestartSec = 0; }; diff --git a/nixos/modules/virtualisation/qemu-vm.nix b/nixos/modules/virtualisation/qemu-vm.nix index 42e43f5ee02..191d7c758c0 100644 --- a/nixos/modules/virtualisation/qemu-vm.nix +++ b/nixos/modules/virtualisation/qemu-vm.nix @@ -14,10 +14,11 @@ with import ../../lib/qemu-flags.nix { inherit pkgs; }; let - qemu = config.system.build.qemu or pkgs.qemu_test; cfg = config.virtualisation; + qemu = cfg.qemu.package; + consoles = lib.concatMapStringsSep " " (c: "console=${c}") cfg.qemu.consoles; driveOpts = { ... }: { @@ -401,6 +402,14 @@ in }; virtualisation.qemu = { + package = + mkOption { + type = types.package; + default = pkgs.qemu; + example = "pkgs.qemu_test"; + description = "QEMU package to use."; + }; + options = mkOption { type = types.listOf types.unspecified; diff --git a/nixos/modules/virtualisation/vagrant-guest.nix b/nixos/modules/virtualisation/vagrant-guest.nix new file mode 100644 index 00000000000..263b1ebca08 --- /dev/null +++ b/nixos/modules/virtualisation/vagrant-guest.nix @@ -0,0 +1,58 @@ +# Minimal configuration that vagrant depends on + +{ config, pkgs, ... }: +let + # Vagrant uses an insecure shared private key by default, but we + # don't use the authorizedKeys attribute under users because it should be + # removed on first boot and replaced with a random one. This script sets + # the correct permissions and installs the temporary key if no + # ~/.ssh/authorized_keys exists. + install-vagrant-ssh-key = pkgs.writeScriptBin "install-vagrant-ssh-key" '' + #!${pkgs.runtimeShell} + if [ ! -e ~/.ssh/authorized_keys ]; then + mkdir -m 0700 -p ~/.ssh + echo "ssh-rsa AAAAB3NzaC1yc2EAAAABIwAAAQEA6NF8iallvQVp22WDkTkyrtvp9eWW6A8YVr+kz4TjGYe7gHzIw+niNltGEFHzD8+v1I2YJ6oXevct1YeS0o9HZyN1Q9qgCgzUFtdOKLv6IedplqoPkcmF0aYet2PkEDo3MlTBckFXPITAMzF8dJSIFo9D8HfdOV0IAdx4O7PtixWKn5y2hMNG0zQPyUecp4pzC6kivAIhyfHilFR61RGL+GPXQ2MWZWFYbAGjyiYJnAmCP3NOTd0jMZEnDkbUvxhMmBYSdETk1rRgm+R4LOzFUGaHqHDLKLX+FIPKcF96hrucXzcWyLbIbEgE98OHlnVYCzRdK8jlqm8tehUc9c9WhQ== vagrant insecure public key" >> ~/.ssh/authorized_keys + chmod 0600 ~/.ssh/authorized_keys + fi + ''; +in +{ + # Enable the OpenSSH daemon. + services.openssh.enable = true; + + # Packages used by Vagrant + environment.systemPackages = with pkgs; [ + findutils + iputils + nettools + netcat + nfs-utils + rsync + ]; + + users.extraUsers.vagrant = { + isNormalUser = true; + createHome = true; + description = "Vagrant user account"; + extraGroups = [ "users" "wheel" ]; + home = "/home/vagrant"; + password = "vagrant"; + useDefaultShell = true; + uid = 1000; + }; + + systemd.services.install-vagrant-ssh-key = { + description = "Vagrant SSH key install (if needed)"; + after = [ "fs.target" ]; + wants = [ "fs.target" ]; + wantedBy = [ "multi-user.target" ]; + serviceConfig = { + ExecStart = "${install-vagrant-ssh-key}/bin/install-vagrant-ssh-key"; + User = "vagrant"; + # So it won't be (needlessly) restarted: + RemainAfterExit = true; + }; + }; + + security.sudo.wheelNeedsPassword = false; +} diff --git a/nixos/modules/virtualisation/vagrant-virtualbox-image.nix b/nixos/modules/virtualisation/vagrant-virtualbox-image.nix new file mode 100644 index 00000000000..2a921894ab6 --- /dev/null +++ b/nixos/modules/virtualisation/vagrant-virtualbox-image.nix @@ -0,0 +1,60 @@ +# Vagrant + VirtualBox + +{ config, pkgs, ... }: + +{ + imports = [ + ./vagrant-guest.nix + ./virtualbox-image.nix + ]; + + virtualbox.params = { + audio = "none"; + audioin = "off"; + audioout = "off"; + usb = "off"; + usbehci = "off"; + }; + sound.enable = false; + documentation.man.enable = false; + documentation.nixos.enable = false; + + users.extraUsers.vagrant.extraGroups = [ "vboxsf" ]; + + # generate the box v1 format which is much easier to generate + # https://www.vagrantup.com/docs/boxes/format.html + system.build.vagrantVirtualbox = pkgs.runCommand + "virtualbox-vagrant.box" + {} + '' + mkdir workdir + cd workdir + + # 1. create that metadata.json file + echo '{"provider":"virtualbox"}' > metadata.json + + # 2. create a default Vagrantfile config + cat < Vagrantfile + Vagrant.configure("2") do |config| + config.vm.base_mac = "0800275F0936" + end + VAGRANTFILE + + # 3. add the exported VM files + tar xvf ${config.system.build.virtualBoxOVA}/*.ova + + # 4. move the ovf to the fixed location + mv *.ovf box.ovf + + # 5. generate OVF manifest file + rm *.mf + touch box.mf + for fname in *; do + checksum=$(sha256sum $fname | cut -d' ' -f 1) + echo "SHA256($fname)= $checksum" >> box.mf + done + + # 6. compress everything back together + tar --owner=0 --group=0 --sort=name --numeric-owner -czf $out . + ''; +} diff --git a/nixos/tests/all-tests.nix b/nixos/tests/all-tests.nix index 6564a958d5b..9ffeba27a7f 100644 --- a/nixos/tests/all-tests.nix +++ b/nixos/tests/all-tests.nix @@ -150,7 +150,6 @@ in hostname = handleTest ./hostname.nix {}; hound = handleTest ./hound.nix {}; hydra = handleTest ./hydra {}; - hydra-db-migration = handleTest ./hydra/db-migration.nix {}; i3wm = handleTest ./i3wm.nix {}; icingaweb2 = handleTest ./icingaweb2.nix {}; iftop = handleTest ./iftop.nix {}; diff --git a/nixos/tests/avahi.nix b/nixos/tests/avahi.nix index 66cff3009f7..c1a9114a40f 100644 --- a/nixos/tests/avahi.nix +++ b/nixos/tests/avahi.nix @@ -2,10 +2,11 @@ , config ? {} , pkgs ? import ../.. { inherit system config; } # bool: whether to use networkd in the tests -, networkd ? false }: +, networkd ? false +} @ args: # Test whether `avahi-daemon' and `libnss-mdns' work as expected. -import ./make-test-python.nix ({ ... } : { +import ./make-test-python.nix { name = "avahi"; meta = with pkgs.stdenv.lib.maintainers; { maintainers = [ eelco ]; @@ -75,4 +76,4 @@ import ./make-test-python.nix ({ ... } : { two.succeed("avahi-browse -r -t _ssh._tcp | tee out >&2") two.succeed("test `wc -l < out` -gt 0") ''; -}) +} args diff --git a/nixos/tests/bitcoind.nix b/nixos/tests/bitcoind.nix index 09f3e4a6ec0..9068b29b8e5 100644 --- a/nixos/tests/bitcoind.nix +++ b/nixos/tests/bitcoind.nix @@ -31,16 +31,16 @@ import ./make-test-python.nix ({ pkgs, ... }: { machine.wait_for_unit("bitcoind-testnet.service") machine.wait_until_succeeds( - 'curl --user rpc:rpc --data-binary \'{"jsonrpc": "1.0", "id":"curltest", "method": "getblockchaininfo", "params": [] }\' -H \'content-type: text/plain;\' localhost:8332 | grep \'"chain":"main"\' ' + 'curl --fail --user rpc:rpc --data-binary \'{"jsonrpc": "1.0", "id":"curltest", "method": "getblockchaininfo", "params": [] }\' -H \'content-type: text/plain;\' localhost:8332 | grep \'"chain":"main"\' ' ) machine.wait_until_succeeds( - 'curl --user rpc2:rpc2 --data-binary \'{"jsonrpc": "1.0", "id":"curltest", "method": "getblockchaininfo", "params": [] }\' -H \'content-type: text/plain;\' localhost:8332 | grep \'"chain":"main"\' ' + 'curl --fail --user rpc2:rpc2 --data-binary \'{"jsonrpc": "1.0", "id":"curltest", "method": "getblockchaininfo", "params": [] }\' -H \'content-type: text/plain;\' localhost:8332 | grep \'"chain":"main"\' ' ) machine.wait_until_succeeds( - 'curl --user rpc:rpc --data-binary \'{"jsonrpc": "1.0", "id":"curltest", "method": "getblockchaininfo", "params": [] }\' -H \'content-type: text/plain;\' localhost:18332 | grep \'"chain":"test"\' ' + 'curl --fail --user rpc:rpc --data-binary \'{"jsonrpc": "1.0", "id":"curltest", "method": "getblockchaininfo", "params": [] }\' -H \'content-type: text/plain;\' localhost:18332 | grep \'"chain":"test"\' ' ) machine.wait_until_succeeds( - 'curl --user rpc2:rpc2 --data-binary \'{"jsonrpc": "1.0", "id":"curltest", "method": "getblockchaininfo", "params": [] }\' -H \'content-type: text/plain;\' localhost:18332 | grep \'"chain":"test"\' ' + 'curl --fail --user rpc2:rpc2 --data-binary \'{"jsonrpc": "1.0", "id":"curltest", "method": "getblockchaininfo", "params": [] }\' -H \'content-type: text/plain;\' localhost:18332 | grep \'"chain":"test"\' ' ) ''; }) diff --git a/nixos/tests/caddy.nix b/nixos/tests/caddy.nix index 445a7fa6b0b..f2de34ff2da 100644 --- a/nixos/tests/caddy.nix +++ b/nixos/tests/caddy.nix @@ -57,11 +57,13 @@ import ./make-test-python.nix ({ pkgs, ... }: { def check_etag(url): etag = webserver.succeed( - "curl -v '{}' 2>&1 | sed -n -e \"s/^< [Ee][Tt][Aa][Gg]: *//p\"".format(url) + "curl --fail -v '{}' 2>&1 | sed -n -e \"s/^< [Ee][Tt][Aa][Gg]: *//p\"".format( + url + ) ) etag = etag.replace("\r\n", " ") http_code = webserver.succeed( - "curl --silent --show-error -o /dev/null -w \"%{{http_code}}\" --head -H 'If-None-Match: {}' {}".format( + "curl --fail --silent --show-error -o /dev/null -w \"%{{http_code}}\" --head -H 'If-None-Match: {}' {}".format( etag, url ) ) diff --git a/nixos/tests/cadvisor.nix b/nixos/tests/cadvisor.nix index 60c04f14780..664aa3ad876 100644 --- a/nixos/tests/cadvisor.nix +++ b/nixos/tests/cadvisor.nix @@ -19,16 +19,16 @@ import ./make-test-python.nix ({ pkgs, ... } : { testScript = '' start_all() machine.wait_for_unit("cadvisor.service") - machine.succeed("curl http://localhost:8080/containers/") + machine.succeed("curl -f http://localhost:8080/containers/") influxdb.wait_for_unit("influxdb.service") # create influxdb database influxdb.succeed( - 'curl -XPOST http://localhost:8086/query --data-urlencode "q=CREATE DATABASE root"' + 'curl -f -XPOST http://localhost:8086/query --data-urlencode "q=CREATE DATABASE root"' ) influxdb.wait_for_unit("cadvisor.service") - influxdb.succeed("curl http://localhost:8080/containers/") + influxdb.succeed("curl -f http://localhost:8080/containers/") ''; }) diff --git a/nixos/tests/certmgr.nix b/nixos/tests/certmgr.nix index ef32f54400e..8f5b8948779 100644 --- a/nixos/tests/certmgr.nix +++ b/nixos/tests/certmgr.nix @@ -11,7 +11,7 @@ let file = { group = "nginx"; owner = "nginx"; - path = "/tmp/${host}-ca.pem"; + path = "/var/ssl/${host}-ca.pem"; }; label = "www_ca"; profile = "three-month"; @@ -20,13 +20,13 @@ let certificate = { group = "nginx"; owner = "nginx"; - path = "/tmp/${host}-cert.pem"; + path = "/var/ssl/${host}-cert.pem"; }; private_key = { group = "nginx"; mode = "0600"; owner = "nginx"; - path = "/tmp/${host}-key.pem"; + path = "/var/ssl/${host}-key.pem"; }; request = { CN = host; @@ -57,6 +57,8 @@ let services.cfssl.enable = true; systemd.services.cfssl.after = [ "cfssl-init.service" "networking.target" ]; + systemd.tmpfiles.rules = [ "d /var/ssl 777 root root" ]; + systemd.services.cfssl-init = { description = "Initialize the cfssl CA"; wantedBy = [ "multi-user.target" ]; @@ -87,8 +89,8 @@ let enable = true; virtualHosts = lib.mkMerge (map (host: { ${host} = { - sslCertificate = "/tmp/${host}-cert.pem"; - sslCertificateKey = "/tmp/${host}-key.pem"; + sslCertificate = "/var/ssl/${host}-cert.pem"; + sslCertificateKey = "/var/ssl/${host}-key.pem"; extraConfig = '' ssl_protocols TLSv1 TLSv1.1 TLSv1.2; ''; @@ -124,16 +126,18 @@ in }; testScript = '' machine.wait_for_unit("cfssl.service") - machine.wait_until_succeeds("ls /tmp/decl.example.org-ca.pem") - machine.wait_until_succeeds("ls /tmp/decl.example.org-key.pem") - machine.wait_until_succeeds("ls /tmp/decl.example.org-cert.pem") - machine.wait_until_succeeds("ls /tmp/imp.example.org-ca.pem") - machine.wait_until_succeeds("ls /tmp/imp.example.org-key.pem") - machine.wait_until_succeeds("ls /tmp/imp.example.org-cert.pem") + machine.wait_until_succeeds("ls /var/ssl/decl.example.org-ca.pem") + machine.wait_until_succeeds("ls /var/ssl/decl.example.org-key.pem") + machine.wait_until_succeeds("ls /var/ssl/decl.example.org-cert.pem") + machine.wait_until_succeeds("ls /var/ssl/imp.example.org-ca.pem") + machine.wait_until_succeeds("ls /var/ssl/imp.example.org-key.pem") + machine.wait_until_succeeds("ls /var/ssl/imp.example.org-cert.pem") machine.wait_for_unit("nginx.service") assert 1 < int(machine.succeed('journalctl -u nginx | grep "Starting Nginx" | wc -l')) - machine.succeed("curl --cacert /tmp/imp.example.org-ca.pem https://imp.example.org") - machine.succeed("curl --cacert /tmp/decl.example.org-ca.pem https://decl.example.org") + machine.succeed("curl --cacert /var/ssl/imp.example.org-ca.pem https://imp.example.org") + machine.succeed( + "curl --cacert /var/ssl/decl.example.org-ca.pem https://decl.example.org" + ) ''; }; diff --git a/nixos/tests/cfssl.nix b/nixos/tests/cfssl.nix index e291fc285fb..170f09d9b76 100644 --- a/nixos/tests/cfssl.nix +++ b/nixos/tests/cfssl.nix @@ -38,7 +38,7 @@ import ./make-test-python.nix ({ pkgs, ...} : { testScript = let cfsslrequest = with pkgs; writeScript "cfsslrequest" '' - curl -X POST -H "Content-Type: application/json" -d @${csr} \ + curl -f -X POST -H "Content-Type: application/json" -d @${csr} \ http://localhost:8888/api/v1/cfssl/newkey | ${cfssl}/bin/cfssljson /tmp/certificate ''; csr = pkgs.writeText "csr.json" (builtins.toJSON { diff --git a/nixos/tests/cloud-init.nix b/nixos/tests/cloud-init.nix index aafa6e24e84..a127be6dd85 100644 --- a/nixos/tests/cloud-init.nix +++ b/nixos/tests/cloud-init.nix @@ -7,6 +7,9 @@ with import ../lib/testing-python.nix { inherit system pkgs; }; with pkgs.lib; let + inherit (import ./ssh-keys.nix pkgs) + snakeOilPrivateKey snakeOilPublicKey; + metadataDrive = pkgs.stdenv.mkDerivation { name = "metadata"; buildCommand = '' @@ -18,13 +21,19 @@ let - content: | cloudinit path: /tmp/cloudinit-write-file + + users: + - default + - name: nixos + ssh_authorized_keys: + - "${snakeOilPublicKey}" EOF cat << EOF > $out/iso/meta-data instance-id: iid-local01 local-hostname: "test" public-keys: - - "should be a key!" + - "${snakeOilPublicKey}" EOF ${pkgs.cdrkit}/bin/genisoimage -volid cidata -joliet -rock -o $out/metadata.iso $out/iso ''; @@ -34,19 +43,40 @@ in makeTest { meta = with pkgs.stdenv.lib.maintainers; { maintainers = [ lewo ]; }; - machine = - { ... }: - { - virtualisation.qemu.options = [ "-cdrom" "${metadataDrive}/metadata.iso" ]; - services.cloud-init.enable = true; - }; + machine = { ... }: + { + virtualisation.qemu.options = [ "-cdrom" "${metadataDrive}/metadata.iso" ]; + services.cloud-init.enable = true; + services.openssh.enable = true; + networking.hostName = ""; + }; testScript = '' - machine.start() - machine.wait_for_unit("cloud-init.service") - machine.succeed("cat /tmp/cloudinit-write-file | grep -q 'cloudinit'") + machine.wait_for_unit("cloud-init.service") + machine.succeed("cat /tmp/cloudinit-write-file | grep -q 'cloudinit'") - machine.wait_until_succeeds( - "cat /root/.ssh/authorized_keys | grep -q 'should be a key!'" - ) + # install snakeoil ssh key and provision .ssh/config file + machine.succeed("mkdir -p ~/.ssh") + machine.succeed( + "cat ${snakeOilPrivateKey} > ~/.ssh/id_snakeoil" + ) + machine.succeed("chmod 600 ~/.ssh/id_snakeoil") + + machine.wait_for_unit("sshd.service") + + # we should be able to log in as the root user, as well as the created nixos user + machine.succeed( + "ssh -o UserKnownHostsFile=/dev/null -o StrictHostKeyChecking=no -o IdentityFile=~/.ssh/id_snakeoil root@localhost 'true'" + ) + machine.succeed( + "ssh -o UserKnownHostsFile=/dev/null -o StrictHostKeyChecking=no -o IdentityFile=~/.ssh/id_snakeoil nixos@localhost 'true'" + ) + + # test changing hostname via cloud-init worked + assert ( + machine.succeed( + "ssh -o UserKnownHostsFile=/dev/null -o StrictHostKeyChecking=no -o IdentityFile=~/.ssh/id_snakeoil nixos@localhost 'hostname'" + ).strip() + == "test" + ) ''; } diff --git a/nixos/tests/common/acme/server/README.md b/nixos/tests/common/acme/server/README.md new file mode 100644 index 00000000000..9de2b2c7102 --- /dev/null +++ b/nixos/tests/common/acme/server/README.md @@ -0,0 +1,21 @@ +# Fake Certificate Authority for ACME testing + +This will set up a test node running [pebble](https://github.com/letsencrypt/pebble) +to serve ACME certificate requests. + +## "Snake oil" certs + +The snake oil certs are hard coded into the repo for reasons explained [here](https://github.com/NixOS/nixpkgs/pull/91121#discussion_r505410235). +The root of the issue is that Nix will hash the derivation based on the arguments +to mkDerivation, not the output. [Minica](https://github.com/jsha/minica) will +always generate a random certificate even if the arguments are unchanged. As a +result, it's possible to end up in a situation where the cached and local +generated certs mismatch and cause issues with testing. + +To generate new certificates, run the following commands: + +```bash +nix-build generate-certs.nix +cp result/* . +rm result +``` diff --git a/nixos/tests/common/acme/server/acme.test.cert.pem b/nixos/tests/common/acme/server/acme.test.cert.pem new file mode 100644 index 00000000000..76b0d916a81 --- /dev/null +++ b/nixos/tests/common/acme/server/acme.test.cert.pem @@ -0,0 +1,19 @@ +-----BEGIN CERTIFICATE----- +MIIDLDCCAhSgAwIBAgIIRDAN3FHH//IwDQYJKoZIhvcNAQELBQAwIDEeMBwGA1UE +AxMVbWluaWNhIHJvb3QgY2EgNzg3NDZmMB4XDTIwMTAyMTEzMjgzNloXDTIyMTEy +MDEzMjgzNlowFDESMBAGA1UEAxMJYWNtZS50ZXN0MIIBIjANBgkqhkiG9w0BAQEF +AAOCAQ8AMIIBCgKCAQEAo8XjMVUaljcaqQ5MFhfPuQgSwdyXEUbpSHz+5yPkE0h9 +Z4Xu5BJF1Oq7h5ggCtadVsIspiY6Jm6aWDOjlh4myzW5UNBNUG3OPEk50vmmHFeH +pImHO/d8yb33QoF9VRcTZs4tuJYg7l9bSs4jNG72vYvv2YiGAcmjJcsmAZIfniCN +Xf/LjIm+Cxykn+Vo3UuzO1w5/iuofdgWO/aZxMezmXUivlL3ih4cNzCJei8WlB/l +EnHrkcy3ogRmmynP5zcz7vmGIJX2ji6dhCa4Got5B7eZK76o2QglhQXqPatG0AOY +H+RfQfzKemqPG5om9MgJtwFtTOU1LoaiBw//jXKESQIDAQABo3YwdDAOBgNVHQ8B +Af8EBAMCBaAwHQYDVR0lBBYwFAYIKwYBBQUHAwEGCCsGAQUFBwMCMAwGA1UdEwEB +/wQCMAAwHwYDVR0jBBgwFoAU+8IZlLV/Qp5CXqpXMLvtxWlxcJwwFAYDVR0RBA0w +C4IJYWNtZS50ZXN0MA0GCSqGSIb3DQEBCwUAA4IBAQB0pe8I5/VDkB5VMgQB2GJV +GKzyigfWbVez9uLmqMj9PPP/zzYKSYeq+91aMuOZrnH7NqBxSTwanULkmqAmhbJJ +YkXw+FlFekf9FyxcuArzwzzNZDSGcjcdXpN8S2K1qkBd00iSJF9kU7pdZYCIKR20 +QirdBrELEfsJ3GU62a6N3a2YsrisZUvq5TbjGJDcytAtt+WG3gmV7RInLdFfPwbw +bEHPCnx0uiV0nxLjd/aVT+RceVrFQVt4hR99jLoMlBitSKluZ1ljsrpIyroBhQT0 +pp/pVi6HJdijG0fsPrC325NEGAwcpotLUhczoeM/rffKJd54wLhDkfYxOyRZXivs +-----END CERTIFICATE----- diff --git a/nixos/tests/common/acme/server/acme.test.key.pem b/nixos/tests/common/acme/server/acme.test.key.pem new file mode 100644 index 00000000000..741df99a372 --- /dev/null +++ b/nixos/tests/common/acme/server/acme.test.key.pem @@ -0,0 +1,27 @@ +-----BEGIN RSA PRIVATE KEY----- +MIIEowIBAAKCAQEAo8XjMVUaljcaqQ5MFhfPuQgSwdyXEUbpSHz+5yPkE0h9Z4Xu +5BJF1Oq7h5ggCtadVsIspiY6Jm6aWDOjlh4myzW5UNBNUG3OPEk50vmmHFeHpImH +O/d8yb33QoF9VRcTZs4tuJYg7l9bSs4jNG72vYvv2YiGAcmjJcsmAZIfniCNXf/L +jIm+Cxykn+Vo3UuzO1w5/iuofdgWO/aZxMezmXUivlL3ih4cNzCJei8WlB/lEnHr +kcy3ogRmmynP5zcz7vmGIJX2ji6dhCa4Got5B7eZK76o2QglhQXqPatG0AOYH+Rf +QfzKemqPG5om9MgJtwFtTOU1LoaiBw//jXKESQIDAQABAoIBADox/2FwVFo8ioS4 +R+Ex5OZjMAcjU6sX/516jTmlT05q2+UFerYgqB/YqXqtW/V9/brulN8VhmRRuRbO +grq9TBu5o3hMDK0f18EkZB/MBnLbx594H033y6gEkPBZAyhRYtuNOEH3VwxdZhtW +1Lu1EoiYSUqLcNMBy6+KWJ8GRaXyacMYBlj2lMHmyzkA/t1+2mwTGC3lT6zN0F5Y +E5umXOxsn6Tb6q3KM9O5IvtmMMKpgj4HIHZLZ6j40nNgHwGRaAv4Sha/vx0DeBw3 +6VlNiTTPdShEkhESlM5/ocqTfI92VHJpM5gkqTYOWBi2aKIPfAopXoqoJdWl4pQ/ +NCFIu2ECgYEAzntNKIcQtf0ewe0/POo07SIFirvz6jVtYNMTzeQfL6CoEjYArJeu +Vzc4wEQfA4ZFVerBb1/O6M449gI3zex1PH4AX0h8q8DSjrppK1Jt2TnpVh97k7Gg +Tnat/M/yW3lWYkcMVJJ3AYurXLFTT1dYP0HvBwZN04yInrEcPNXKfmcCgYEAywyJ +51d4AE94PrANathKqSI/gk8sP+L1gzylZCcUEAiGk/1r45iYB4HN2gvWbS+CvSdp +F7ShlDWrTaNh2Bm1dgTjc4pWb4J+CPy/KN2sgLwIuM4+ZWIZmEDcio6khrM/gNqK +aR7xUsvWsqU26O84woY/xR8IHjSNF7cFWE1H2c8CgYEAt6SSi2kVQ8dMg84uYE8t +o3qO00U3OycpkOQqyQQLeKC62veMwfRl6swCfX4Y11mkcTXJtPTRYd2Ia8StPUkB +PDwUuKoPt/JXUvoYb59wc7M+BIsbrdBdc2u6cw+/zfutCNuH6/AYSBeg4WAVaIuW +wSwzG1xP+8cR+5IqOzEqWCECgYATweeVTCyQEyuHJghYMi2poXx+iIesu7/aAkex +pB/Oo5W8xrb90XZRnK7UHbzCqRHWqAQQ23Gxgztk9ZXqui2vCzC6qGZauV7cLwPG +zTMg36sVmHP314DYEM+k59ZYiQ6P0jQPoIQo407D2VGrfsOOIhQIcUmP7tsfyJ5L +hlGMfwKBgGq4VNnnuX8I5kl03NpaKfG+M8jEHmVwtI9RkPTCCX9bMjeG0cDxqPTF +TRkf3r8UWQTZ5QfAfAXYAOlZvmGhHjSembRbXMrMdi3rGsYRSrQL6n5NHnORUaMy +FCWo4gyAnniry7tx9dVNgmHmbjEHuQnf8AC1r3dibRCjvJWUiQ8H +-----END RSA PRIVATE KEY----- diff --git a/nixos/tests/common/acme/server/ca.cert.pem b/nixos/tests/common/acme/server/ca.cert.pem new file mode 100644 index 00000000000..5c33e879b67 --- /dev/null +++ b/nixos/tests/common/acme/server/ca.cert.pem @@ -0,0 +1,20 @@ +-----BEGIN CERTIFICATE----- +MIIDSzCCAjOgAwIBAgIIeHRvRrNvbGQwDQYJKoZIhvcNAQELBQAwIDEeMBwGA1UE +AxMVbWluaWNhIHJvb3QgY2EgNzg3NDZmMCAXDTIwMTAyMTEzMjgzNloYDzIxMjAx +MDIxMTMyODM2WjAgMR4wHAYDVQQDExVtaW5pY2Egcm9vdCBjYSA3ODc0NmYwggEi +MA0GCSqGSIb3DQEBAQUAA4IBDwAwggEKAoIBAQCrNTzVLDJOKtGYGLU98EEcLKps +tXHCLC6G54LKbEcU80fn+ArX8qsPSHyhdXQkcYjq6Vh/EDJ1TctyRSnvAjwyG4Aa +1Zy1QFc/JnjMjvzimCkUc9lQ+wkLwHSM/KGwR1cGjmtQ/EMClZTA0NwulJsXMKVz +bd5asXbq/yJTQ5Ww25HtdNjwRQXTvB7r3IKcY+DsED9CvFvC9oG/ZhtZqZuyyRdC +kFUrrv8WNUDkWSN+lMR6xMx8v0583IN6f11IhX0b+svK98G81B2eswBdkzvVyv9M +unZBO0JuJG8sdM502KhWLmzBC1ZbvgUBF9BumDRpMFH4DCj7+qQ2taWeGyc7AgMB +AAGjgYYwgYMwDgYDVR0PAQH/BAQDAgKEMB0GA1UdJQQWMBQGCCsGAQUFBwMBBggr +BgEFBQcDAjASBgNVHRMBAf8ECDAGAQH/AgEAMB0GA1UdDgQWBBT7whmUtX9CnkJe +qlcwu+3FaXFwnDAfBgNVHSMEGDAWgBT7whmUtX9CnkJeqlcwu+3FaXFwnDANBgkq +hkiG9w0BAQsFAAOCAQEARMe1wKmF33GjEoLLw0oDDS4EdAv26BzCwtrlljsEtwQN +95oSzUNd6o4Js7WCG2o543OX6cxzM+yju8TES3+vJKDgsbNMU0bWCv//tdrb0/G8 +OkU3Kfi5q4fOauZ1pqGv/pXdfYhZ5ieB/zwis3ykANe5JfB0XqwCb1Vd0C3UCIS2 +NPKngRwNSzphIsbzfvxGDkdM1enuGl5CVyDhrwTMqGaJGDSOv6U5jKFxKRvigqTN +Ls9lPmT5NXYETduWLBR3yUIdH6kZXrcozZ02B9vjOB2Cv4RMDc+9eM30CLIWpf1I +097e7JkhzxFhfC/bMMt3P1FeQc+fwH91wdBmNi7tQw== +-----END CERTIFICATE----- diff --git a/nixos/tests/common/acme/server/ca.key.pem b/nixos/tests/common/acme/server/ca.key.pem new file mode 100644 index 00000000000..ed46f5dccf4 --- /dev/null +++ b/nixos/tests/common/acme/server/ca.key.pem @@ -0,0 +1,27 @@ +-----BEGIN RSA PRIVATE KEY----- +MIIEowIBAAKCAQEAqzU81SwyTirRmBi1PfBBHCyqbLVxwiwuhueCymxHFPNH5/gK +1/KrD0h8oXV0JHGI6ulYfxAydU3LckUp7wI8MhuAGtWctUBXPyZ4zI784pgpFHPZ +UPsJC8B0jPyhsEdXBo5rUPxDApWUwNDcLpSbFzClc23eWrF26v8iU0OVsNuR7XTY +8EUF07we69yCnGPg7BA/QrxbwvaBv2YbWambsskXQpBVK67/FjVA5FkjfpTEesTM +fL9OfNyDen9dSIV9G/rLyvfBvNQdnrMAXZM71cr/TLp2QTtCbiRvLHTOdNioVi5s +wQtWW74FARfQbpg0aTBR+Awo+/qkNrWlnhsnOwIDAQABAoIBAA3ykVkgd5ysmlSU +trcsCnHcJaojgff6l3PACoSpG4VWaGY6a8+54julgRm6MtMBONFCX0ZCsImj484U +Wl0xRmwil2YYPuL5MeJgJPktMObY1IfpBCw3tz3w2M3fiuCMf0d2dMGtO1xLiUnH ++hgFXTkfamsj6ThkOrbcQBSebeRxbKM5hqyCaQoieV+0IJnyxUVq/apib8N50VsH +SHd4oqLUuEZgg6N70+l5DpzedJUb4nrwS/KhUHUBgnoPItYBCiGPmrwLk7fUhPs6 +kTDqJDtc/xW/JbjmzhWEpVvtumcC/OEKULss7HLdeQqwVBrRQkznb0M9AnSra3d0 +X11/Y4ECgYEA3FC8SquLPFb2lHK4+YbJ4Ac6QVWeYFEHiZ0Rj+CmONmjcAvOGLPE +SblRLm3Nbrkxbm8FF6/AfXa/rviAKEVPs5xqGfSDw/3n1uInPcmShiBCLwM/jHH5 +NeVG+R5mTg5zyQ/pQMLWRcs+Ail+ZAnZuoGpW3Cdc8OtCUYFQ7XB6nsCgYEAxvBJ +zFxcTtsDzWbMWXejugQiUqJcEbKWwEfkRbf3J2rAVO2+EFr7LxdRfN2VwPiTQcWc +LnN2QN+ouOjqBMTh3qm5oQY+TLLHy86k9g1k0gXWkMRQgP2ZdfWH1HyrwjLUgLe1 +VezFN7N1azgy6xFkInAAvuA4loxElZNvkGBgekECgYA/Xw26ILvNIGqO6qzgQXAh ++5I7JsiGheg4IjDiBMlrQtbrLMoceuD0H9UFGNplhel9DXwWgxxIOncKejpK2x0A +2fX+/0FDh+4+9hA5ipiV8gN3iGSoHkSDxy5yC9d7jlapt+TtFt4Rd1OfxZWwatDw +/8jaH3t6yAcmyrhK8KYVrwKBgAE5KwsBqmOlvyE9N5Z5QN189wUREIXfVkP6bTHs +jq2EX4hmKdwJ4y+H8i1VY31bSfSGlY5HkXuWpH/2lrHO0CDBZG3UDwADvWzIaYVF +0c/kz0v2mRQh+xaZmus4lQnNrDbaalgL666LAPbW0qFVaws3KxoBYPe0BxvwWyhF +H3LBAoGBAKRRNsq2pWQ8Gqxc0rVoH0FlexU9U2ci3lsLmgEB0A/o/kQkSyAxaRM+ +VdKp3sWfO8o8lX5CVQslCNBSjDTNcat3Co4NEBLg6Xv1yKN/WN1GhusnchP9szsP +oU47gC89QhUyWSd6vvr2z2NG9C3cACxe4dhDSHQcE4nHSldzCKv2 +-----END RSA PRIVATE KEY----- diff --git a/nixos/tests/common/acme/server/default.nix b/nixos/tests/common/acme/server/default.nix index cea10c16900..1c3bfdf76b7 100644 --- a/nixos/tests/common/acme/server/default.nix +++ b/nixos/tests/common/acme/server/default.nix @@ -51,10 +51,7 @@ # that it has to be started _before_ the ACME service. { config, pkgs, lib, ... }: let - testCerts = import ./snakeoil-certs.nix { - minica = pkgs.minica; - mkDerivation = pkgs.stdenv.mkDerivation; - }; + testCerts = import ./snakeoil-certs.nix; domain = testCerts.domain; resolver = let diff --git a/nixos/tests/common/acme/server/generate-certs.nix b/nixos/tests/common/acme/server/generate-certs.nix new file mode 100644 index 00000000000..cd8fe0dffca --- /dev/null +++ b/nixos/tests/common/acme/server/generate-certs.nix @@ -0,0 +1,29 @@ +# Minica can provide a CA key and cert, plus a key +# and cert for our fake CA server's Web Front End (WFE). +{ + pkgs ? import {}, + minica ? pkgs.minica, + mkDerivation ? pkgs.stdenv.mkDerivation +}: +let + conf = import ./snakeoil-certs.nix; + domain = conf.domain; +in mkDerivation { + name = "test-certs"; + buildInputs = [ minica ]; + phases = [ "buildPhase" "installPhase" ]; + + buildPhase = '' + minica \ + --ca-key ca.key.pem \ + --ca-cert ca.cert.pem \ + --domains ${domain} + ''; + + installPhase = '' + mkdir -p $out + mv ca.*.pem $out/ + mv ${domain}/key.pem $out/${domain}.key.pem + mv ${domain}/cert.pem $out/${domain}.cert.pem + ''; +} diff --git a/nixos/tests/common/acme/server/snakeoil-certs.nix b/nixos/tests/common/acme/server/snakeoil-certs.nix index 4b6a38b8fa3..11c3f7fc929 100644 --- a/nixos/tests/common/acme/server/snakeoil-certs.nix +++ b/nixos/tests/common/acme/server/snakeoil-certs.nix @@ -1,37 +1,13 @@ -# Minica can provide a CA key and cert, plus a key -# and cert for our fake CA server's Web Front End (WFE). -{ minica, mkDerivation }: let domain = "acme.test"; - - selfSignedCertData = mkDerivation { - name = "test-certs"; - buildInputs = [ minica ]; - phases = [ "buildPhase" "installPhase" ]; - - buildPhase = '' - mkdir ca - minica \ - --ca-key ca/key.pem \ - --ca-cert ca/cert.pem \ - --domains ${domain} - chmod 600 ca/* - chmod 640 ${domain}/*.pem - ''; - - installPhase = '' - mkdir -p $out - mv ${domain} ca $out/ - ''; - }; in { inherit domain; ca = { - cert = "${selfSignedCertData}/ca/cert.pem"; - key = "${selfSignedCertData}/ca/key.pem"; + cert = ./ca.cert.pem; + key = ./ca.key.pem; }; "${domain}" = { - cert = "${selfSignedCertData}/${domain}/cert.pem"; - key = "${selfSignedCertData}/${domain}/key.pem"; + cert = ./. + "/${domain}.cert.pem"; + key = ./. + "/${domain}.key.pem"; }; } diff --git a/nixos/tests/convos.nix b/nixos/tests/convos.nix index b4ff1188fd8..af2758c857d 100644 --- a/nixos/tests/convos.nix +++ b/nixos/tests/convos.nix @@ -25,6 +25,6 @@ in machine.wait_for_unit("convos") machine.wait_for_open_port("${toString port}") machine.succeed("journalctl -u convos | grep -q 'Listening at.*${toString port}'") - machine.succeed("curl http://localhost:${toString port}/") + machine.succeed("curl -f http://localhost:${toString port}/") ''; }) diff --git a/nixos/tests/corerad.nix b/nixos/tests/corerad.nix index 37a1e90477a..638010f92f4 100644 --- a/nixos/tests/corerad.nix +++ b/nixos/tests/corerad.nix @@ -80,7 +80,7 @@ import ./make-test-python.nix ( ), "SLAAC temporary address was not configured on client after router advertisement" with subtest("Verify HTTP debug server is configured"): - out = router.succeed("curl localhost:9430/metrics") + out = router.succeed("curl -f localhost:9430/metrics") assert ( "corerad_build_info" in out diff --git a/nixos/tests/docker-edge.nix b/nixos/tests/docker-edge.nix index 96de885a554..703179eef19 100644 --- a/nixos/tests/docker-edge.nix +++ b/nixos/tests/docker-edge.nix @@ -43,7 +43,7 @@ import ./make-test-python.nix ({ pkgs, ...} : { docker.fail("sudo -u noprivs docker ps") docker.succeed("docker stop sleeping") - # Must match version twice to ensure client and server versions are correct - docker.succeed('[ $(docker version | grep ${pkgs.docker-edge.version} | wc -l) = "2" ]') + # Must match version 4 times to ensure client and server git commits and versions are correct + docker.succeed('[ $(docker version | grep ${pkgs.docker-edge.version} | wc -l) = "4" ]') ''; }) diff --git a/nixos/tests/docker-tools.nix b/nixos/tests/docker-tools.nix index edb9aec62db..c1c41b0fc11 100644 --- a/nixos/tests/docker-tools.nix +++ b/nixos/tests/docker-tools.nix @@ -115,7 +115,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { "docker load --input='${examples.nginx}'", "docker run --name nginx -d -p 8000:80 ${examples.nginx.imageName}", ) - docker.wait_until_succeeds("curl http://localhost:8000/") + docker.wait_until_succeeds("curl -f http://localhost:8000/") docker.succeed( "docker rm --force nginx", "docker rmi '${examples.nginx.imageName}'", ) diff --git a/nixos/tests/ferm.nix b/nixos/tests/ferm.nix index a73c9ce739c..112b5f19a7d 100644 --- a/nixos/tests/ferm.nix +++ b/nixos/tests/ferm.nix @@ -56,6 +56,7 @@ import ./make-test-python.nix ({ pkgs, ...} : { start_all() client.wait_for_unit("network-online.target") + server.wait_for_unit("network-online.target") server.wait_for_unit("ferm.service") server.wait_for_unit("nginx.service") server.wait_until_succeeds("ss -ntl | grep -q 80") diff --git a/nixos/tests/go-neb.nix b/nixos/tests/go-neb.nix index d9e5db0b4a5..531ab5a6671 100644 --- a/nixos/tests/go-neb.nix +++ b/nixos/tests/go-neb.nix @@ -34,7 +34,7 @@ import ./make-test-python.nix ({ pkgs, ... }: start_all() server.wait_for_unit("go-neb.service") server.wait_until_succeeds( - "curl -L http://localhost:4050/services/hooks/d2lraXBlZGlhX3NlcnZpY2U" + "curl -fL http://localhost:4050/services/hooks/d2lraXBlZGlhX3NlcnZpY2U" ) server.wait_until_succeeds( "journalctl -eu go-neb -o cat | grep -q service_id=wikipedia_service" diff --git a/nixos/tests/hadoop/hdfs.nix b/nixos/tests/hadoop/hdfs.nix index 85aaab34b15..f1f98ed42eb 100644 --- a/nixos/tests/hadoop/hdfs.nix +++ b/nixos/tests/hadoop/hdfs.nix @@ -48,7 +48,7 @@ import ../make-test-python.nix ({...}: { datanode.wait_for_open_port(9866) datanode.wait_for_open_port(9867) - namenode.succeed("curl http://namenode:9870") - datanode.succeed("curl http://datanode:9864") + namenode.succeed("curl -f http://namenode:9870") + datanode.succeed("curl -f http://datanode:9864") ''; }) diff --git a/nixos/tests/hadoop/yarn.nix b/nixos/tests/hadoop/yarn.nix index 2264ecaff15..01077245d39 100644 --- a/nixos/tests/hadoop/yarn.nix +++ b/nixos/tests/hadoop/yarn.nix @@ -40,7 +40,7 @@ import ../make-test-python.nix ({...}: { nodemanager.wait_for_open_port(8042) nodemanager.wait_for_open_port(8041) - resourcemanager.succeed("curl http://localhost:8088") - nodemanager.succeed("curl http://localhost:8042") + resourcemanager.succeed("curl -f http://localhost:8088") + nodemanager.succeed("curl -f http://localhost:8042") ''; }) diff --git a/nixos/tests/haproxy.nix b/nixos/tests/haproxy.nix index ffb77c052a2..2c3878131b6 100644 --- a/nixos/tests/haproxy.nix +++ b/nixos/tests/haproxy.nix @@ -39,9 +39,9 @@ import ./make-test-python.nix ({ pkgs, ...}: { machine.wait_for_unit("multi-user.target") machine.wait_for_unit("haproxy.service") machine.wait_for_unit("httpd.service") - assert "We are all good!" in machine.succeed("curl -k http://localhost:80/index.txt") + assert "We are all good!" in machine.succeed("curl -fk http://localhost:80/index.txt") assert "haproxy_process_pool_allocated_bytes" in machine.succeed( - "curl -k http://localhost:80/metrics" + "curl -fk http://localhost:80/metrics" ) with subtest("reload"): @@ -49,7 +49,7 @@ import ./make-test-python.nix ({ pkgs, ...}: { # wait some time to ensure the following request hits the reloaded haproxy machine.sleep(5) assert "We are all good!" in machine.succeed( - "curl -k http://localhost:80/index.txt" + "curl -fk http://localhost:80/index.txt" ) ''; }) diff --git a/nixos/tests/hitch/default.nix b/nixos/tests/hitch/default.nix index 904d12619d7..8a2193e75f2 100644 --- a/nixos/tests/hitch/default.nix +++ b/nixos/tests/hitch/default.nix @@ -28,6 +28,6 @@ import ../make-test-python.nix ({ pkgs, ... }: machine.wait_for_unit("multi-user.target") machine.wait_for_unit("hitch.service") machine.wait_for_open_port(443) - assert "We are all good!" in machine.succeed("curl -k https://localhost:443/index.txt") + assert "We are all good!" in machine.succeed("curl -fk https://localhost:443/index.txt") ''; }) diff --git a/nixos/tests/hound.nix b/nixos/tests/hound.nix index 27c65abdf27..b8b10022bd9 100644 --- a/nixos/tests/hound.nix +++ b/nixos/tests/hound.nix @@ -53,7 +53,7 @@ import ./make-test-python.nix ({ pkgs, ... } : { machine.wait_for_unit("hound.service") machine.wait_for_open_port(6080) machine.wait_until_succeeds( - "curl http://127.0.0.1:6080/api/v1/search\?stats\=fosho\&repos\=\*\&rng=%3A20\&q\=hi\&files\=\&i=nope | grep 'Filename' | grep 'hello'" + "curl -f http://127.0.0.1:6080/api/v1/search\?stats\=fosho\&repos\=\*\&rng=%3A20\&q\=hi\&files\=\&i=nope | grep 'Filename' | grep 'hello'" ) ''; }) diff --git a/nixos/tests/hydra/db-migration.nix b/nixos/tests/hydra/db-migration.nix deleted file mode 100644 index ca65e2e66aa..00000000000 --- a/nixos/tests/hydra/db-migration.nix +++ /dev/null @@ -1,92 +0,0 @@ -{ system ? builtins.currentSystem -, pkgs ? import ../../.. { inherit system; } -, ... -}: - -let inherit (import ./common.nix { inherit system; }) baseConfig; in - -with import ../../lib/testing-python.nix { inherit system pkgs; }; -with pkgs.lib; - -{ mig = makeTest { - name = "hydra-db-migration"; - meta = with pkgs.stdenv.lib.maintainers; { - maintainers = [ ma27 ]; - }; - - nodes = { - original = { pkgs, lib, ... }: { - imports = [ baseConfig ]; - - # An older version of Hydra before the db change - # for testing purposes. - services.hydra.package = pkgs.hydra-migration.overrideAttrs (old: { - inherit (old) pname; - version = "2020-02-06"; - src = pkgs.fetchFromGitHub { - owner = "NixOS"; - repo = "hydra"; - rev = "2b4f14963b16b21ebfcd6b6bfa7832842e9b2afc"; - sha256 = "16q0cffcsfx5pqd91n9k19850c1nbh4vvbd9h8yi64ihn7v8bick"; - }; - }); - }; - - migration_phase1 = { pkgs, lib, ... }: { - imports = [ baseConfig ]; - services.hydra.package = pkgs.hydra-migration; - }; - - finished = { pkgs, lib, ... }: { - imports = [ baseConfig ]; - services.hydra.package = pkgs.hydra-unstable; - }; - }; - - testScript = { nodes, ... }: let - next = nodes.migration_phase1.config.system.build.toplevel; - finished = nodes.finished.config.system.build.toplevel; - in '' - original.start() - original.wait_for_unit("multi-user.target") - original.wait_for_unit("postgresql.service") - original.wait_for_unit("hydra-init.service") - original.require_unit_state("hydra-queue-runner.service") - original.require_unit_state("hydra-evaluator.service") - original.require_unit_state("hydra-notify.service") - original.succeed("hydra-create-user admin --role admin --password admin") - original.wait_for_open_port(3000) - original.succeed("create-trivial-project.sh") - original.wait_until_succeeds( - 'curl -L -s http://localhost:3000/build/1 -H "Accept: application/json" | jq .buildstatus | xargs test 0 -eq' - ) - - out = original.succeed("su -l postgres -c 'psql -d hydra <<< \"\\d+ builds\" -A'") - assert "jobset_id" not in out - - original.succeed( - "${next}/bin/switch-to-configuration test >&2" - ) - original.wait_for_unit("hydra-init.service") - - out = original.succeed("su -l postgres -c 'psql -d hydra <<< \"\\d+ builds\" -A'") - assert "jobset_id|integer|||" in out - - original.succeed("hydra-backfill-ids") - - original.succeed( - "${finished}/bin/switch-to-configuration test >&2" - ) - original.wait_for_unit("hydra-init.service") - - out = original.succeed("su -l postgres -c 'psql -d hydra <<< \"\\d+ builds\" -A'") - assert "jobset_id|integer||not null|" in out - - original.wait_until_succeeds( - 'curl -L -s http://localhost:3000/build/1 -H "Accept: application/json" | jq .buildstatus | xargs test 0 -eq' - ) - - original.shutdown() - ''; - }; -} diff --git a/nixos/tests/hydra/default.nix b/nixos/tests/hydra/default.nix index 2336e4033d6..e91a1cd3359 100644 --- a/nixos/tests/hydra/default.nix +++ b/nixos/tests/hydra/default.nix @@ -11,7 +11,7 @@ let inherit (import ./common.nix { inherit system; }) baseConfig; hydraPkgs = { - inherit (pkgs) hydra-migration hydra-unstable; + inherit (pkgs) hydra-unstable; }; makeHydraTest = with pkgs.lib; name: package: makeTest { diff --git a/nixos/tests/installed-tests/default.nix b/nixos/tests/installed-tests/default.nix index 889a00d4b56..50ca8ad2b50 100644 --- a/nixos/tests/installed-tests/default.nix +++ b/nixos/tests/installed-tests/default.nix @@ -101,5 +101,6 @@ in libxmlb = callInstalledTest ./libxmlb.nix {}; malcontent = callInstalledTest ./malcontent.nix {}; ostree = callInstalledTest ./ostree.nix {}; + pipewire = callInstalledTest ./pipewire.nix {}; xdg-desktop-portal = callInstalledTest ./xdg-desktop-portal.nix {}; } diff --git a/nixos/tests/installed-tests/pipewire.nix b/nixos/tests/installed-tests/pipewire.nix new file mode 100644 index 00000000000..f4154b5d2fd --- /dev/null +++ b/nixos/tests/installed-tests/pipewire.nix @@ -0,0 +1,5 @@ +{ pkgs, lib, makeInstalledTest, ... }: + +makeInstalledTest { + tested = pkgs.pipewire; +} diff --git a/nixos/tests/leaps.nix b/nixos/tests/leaps.nix index ac0c602d445..ec5b69a7629 100644 --- a/nixos/tests/leaps.nix +++ b/nixos/tests/leaps.nix @@ -26,7 +26,7 @@ import ./make-test-python.nix ({ pkgs, ... }: server.wait_for_open_port(6666) client.wait_for_unit("network.target") assert "leaps" in client.succeed( - "${pkgs.curl}/bin/curl http://server:6666/leaps/" + "${pkgs.curl}/bin/curl -f http://server:6666/leaps/" ) ''; }) diff --git a/nixos/tests/limesurvey.nix b/nixos/tests/limesurvey.nix index 7228fcb8331..dad807fb733 100644 --- a/nixos/tests/limesurvey.nix +++ b/nixos/tests/limesurvey.nix @@ -20,7 +20,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { machine.wait_for_unit("phpfpm-limesurvey.service") assert "The following surveys are available" in machine.succeed( - "curl http://example.local/" + "curl -f http://example.local/" ) ''; }) diff --git a/nixos/tests/mailcatcher.nix b/nixos/tests/mailcatcher.nix index 2ef38544fe0..a55fba8a995 100644 --- a/nixos/tests/mailcatcher.nix +++ b/nixos/tests/mailcatcher.nix @@ -24,7 +24,7 @@ import ./make-test-python.nix ({ lib, ... }: 'echo "this is the body of the email" | mail -s "subject" root@example.org' ) assert "this is the body of the email" in machine.succeed( - "curl http://localhost:1080/messages/1.source" + "curl -f http://localhost:1080/messages/1.source" ) ''; }) diff --git a/nixos/tests/matrix-synapse.nix b/nixos/tests/matrix-synapse.nix index 9ca80872176..6c8f1e188d5 100644 --- a/nixos/tests/matrix-synapse.nix +++ b/nixos/tests/matrix-synapse.nix @@ -77,12 +77,12 @@ in { start_all() serverpostgres.wait_for_unit("matrix-synapse.service") serverpostgres.wait_until_succeeds( - "curl -L --cacert ${ca_pem} https://localhost:8448/" + "curl --fail -L --cacert ${ca_pem} https://localhost:8448/" ) serverpostgres.require_unit_state("postgresql.service") serversqlite.wait_for_unit("matrix-synapse.service") serversqlite.wait_until_succeeds( - "curl -L --cacert ${ca_pem} https://localhost:8448/" + "curl --fail -L --cacert ${ca_pem} https://localhost:8448/" ) serversqlite.succeed("[ -e /var/lib/matrix-synapse/homeserver.db ]") ''; diff --git a/nixos/tests/mediawiki.nix b/nixos/tests/mediawiki.nix index 008682310cf..702fefefa16 100644 --- a/nixos/tests/mediawiki.nix +++ b/nixos/tests/mediawiki.nix @@ -22,7 +22,7 @@ import ./make-test-python.nix ({ pkgs, lib, ... }: { machine.wait_for_unit("phpfpm-mediawiki.service") - page = machine.succeed("curl -L http://localhost/") + page = machine.succeed("curl -fL http://localhost/") assert "MediaWiki has been installed" in page ''; }) diff --git a/nixos/tests/metabase.nix b/nixos/tests/metabase.nix index 1450a4e9086..65619cc793a 100644 --- a/nixos/tests/metabase.nix +++ b/nixos/tests/metabase.nix @@ -15,6 +15,6 @@ import ./make-test-python.nix ({ pkgs, ... }: { start_all() machine.wait_for_unit("metabase.service") machine.wait_for_open_port(3000) - machine.wait_until_succeeds("curl -L http://localhost:3000/setup | grep Metabase") + machine.wait_until_succeeds("curl -fL http://localhost:3000/setup | grep Metabase") ''; }) diff --git a/nixos/tests/morty.nix b/nixos/tests/morty.nix index 64c5a27665d..ff30b7c072b 100644 --- a/nixos/tests/morty.nix +++ b/nixos/tests/morty.nix @@ -24,7 +24,7 @@ import ./make-test-python.nix ({ pkgs, ... }: '' mortyProxyWithKey.wait_for_unit("default.target") mortyProxyWithKey.wait_for_open_port(3001) - mortyProxyWithKey.succeed("curl -L 127.0.0.1:3001 | grep MortyProxy") + mortyProxyWithKey.succeed("curl -fL 127.0.0.1:3001 | grep MortyProxy") ''; }) diff --git a/nixos/tests/neo4j.nix b/nixos/tests/neo4j.nix index 32ee7f501b8..8329e5630d7 100644 --- a/nixos/tests/neo4j.nix +++ b/nixos/tests/neo4j.nix @@ -15,6 +15,6 @@ import ./make-test-python.nix { master.wait_for_unit("neo4j") master.wait_for_open_port(7474) - master.succeed("curl http://localhost:7474/") + master.succeed("curl -f http://localhost:7474/") ''; } diff --git a/nixos/tests/nixos-generate-config.nix b/nixos/tests/nixos-generate-config.nix index 6c83ccecc70..5daa55a8abb 100644 --- a/nixos/tests/nixos-generate-config.nix +++ b/nixos/tests/nixos-generate-config.nix @@ -7,8 +7,16 @@ import ./make-test-python.nix ({ lib, ... } : { { config, pkgs, ... }: { imports = [ ./hardware-configuration.nix ]; $bootLoaderConfig + $desktopConfiguration } ''; + + system.nixos-generate-config.desktopConfiguration = '' + # DESKTOP + # services.xserver.enable = true; + # services.xserver.displayManager.gdm.enable = true; + # services.xserver.desktopManager.gnome3.enable = true; + ''; }; testScript = '' start_all() @@ -18,9 +26,17 @@ import ./make-test-python.nix ({ lib, ... } : { # Test if the configuration really is overridden machine.succeed("grep 'OVERRIDDEN' /etc/nixos/configuration.nix") + # Test if desktop configuration really is overridden + machine.succeed("grep 'DESKTOP' /etc/nixos/configuration.nix") + # Test of if the Perl variable $bootLoaderConfig is spliced correctly: machine.succeed( "grep 'boot\\.loader\\.grub\\.enable = true;' /etc/nixos/configuration.nix" ) + + # Test if the Perl variable $desktopConfiguration is spliced correctly + machine.succeed( + "grep 'services\\.xserver\\.desktopManager\\.gnome3\\.enable = true;' /etc/nixos/configuration.nix" + ) ''; }) diff --git a/nixos/tests/nzbget.nix b/nixos/tests/nzbget.nix index 12d8ed6ea8d..b39c9b035e6 100644 --- a/nixos/tests/nzbget.nix +++ b/nixos/tests/nzbget.nix @@ -21,7 +21,7 @@ import ./make-test-python.nix ({ pkgs, ...} : { server.wait_for_unit("network.target") server.wait_for_open_port(6789) assert "This file is part of nzbget" in server.succeed( - "curl -s -u nzbget:tegbzn6789 http://127.0.0.1:6789" + "curl -f -s -u nzbget:tegbzn6789 http://127.0.0.1:6789" ) server.succeed( "${pkgs.nzbget}/bin/nzbget -n -o Control_iP=127.0.0.1 -o Control_port=6789 -o Control_password=tegbzn6789 -V" diff --git a/nixos/tests/oci-containers.nix b/nixos/tests/oci-containers.nix index bb6c019f07c..0dfc7ffb276 100644 --- a/nixos/tests/oci-containers.nix +++ b/nixos/tests/oci-containers.nix @@ -32,7 +32,7 @@ let start_all() ${backend}.wait_for_unit("${backend}-nginx.service") ${backend}.wait_for_open_port(8181) - ${backend}.wait_until_succeeds("curl http://localhost:8181 | grep Hello") + ${backend}.wait_until_succeeds("curl -f http://localhost:8181 | grep Hello") ''; }; diff --git a/nixos/tests/osrm-backend.nix b/nixos/tests/osrm-backend.nix index db67a5a589f..4067d5b1a23 100644 --- a/nixos/tests/osrm-backend.nix +++ b/nixos/tests/osrm-backend.nix @@ -48,10 +48,10 @@ in { machine.wait_for_unit("osrm.service") machine.wait_for_open_port(${toString port}) assert "Boulevard Rainier III" in machine.succeed( - "curl --silent '${query}' | jq .waypoints[0].name" + "curl --fail --silent '${query}' | jq .waypoints[0].name" ) assert "Avenue de la Costa" in machine.succeed( - "curl --silent '${query}' | jq .waypoints[1].name" + "curl --fail --silent '${query}' | jq .waypoints[1].name" ) ''; }) diff --git a/nixos/tests/paperless.nix b/nixos/tests/paperless.nix index 355e7041d3f..fb83e6f976d 100644 --- a/nixos/tests/paperless.nix +++ b/nixos/tests/paperless.nix @@ -23,14 +23,14 @@ import ./make-test-python.nix ({ lib, ... } : { with subtest("Service gets ready"): machine.wait_for_unit("paperless-server.service") # Wait until server accepts connections - machine.wait_until_succeeds("curl -s localhost:28981") + machine.wait_until_succeeds("curl -fs localhost:28981") with subtest("Test document is consumed"): machine.wait_until_succeeds( - "(($(curl -s localhost:28981/api/documents/ | jq .count) == 1))" + "(($(curl -fs localhost:28981/api/documents/ | jq .count) == 1))" ) assert "2005-10-16" in machine.succeed( - "curl -s localhost:28981/api/documents/ | jq '.results | .[0] | .created'" + "curl -fs localhost:28981/api/documents/ | jq '.results | .[0] | .created'" ) ''; }) diff --git a/nixos/tests/peerflix.nix b/nixos/tests/peerflix.nix index 37628604d49..6e534dedc47 100644 --- a/nixos/tests/peerflix.nix +++ b/nixos/tests/peerflix.nix @@ -18,6 +18,6 @@ import ./make-test-python.nix ({ pkgs, ...} : { start_all() peerflix.wait_for_unit("peerflix.service") - peerflix.wait_until_succeeds("curl localhost:9000") + peerflix.wait_until_succeeds("curl -f localhost:9000") ''; }) diff --git a/nixos/tests/php/fpm.nix b/nixos/tests/php/fpm.nix index 513abd94373..9ad515ebdde 100644 --- a/nixos/tests/php/fpm.nix +++ b/nixos/tests/php/fpm.nix @@ -43,7 +43,7 @@ import ../make-test-python.nix ({pkgs, lib, ...}: { machine.wait_for_unit("phpfpm-foobar.service") # Check so we get an evaluated PHP back - response = machine.succeed("curl -vvv -s http://127.0.0.1:80/") + response = machine.succeed("curl -fvvv -s http://127.0.0.1:80/") assert "PHP Version ${pkgs.php.version}" in response, "PHP version not detected" # Check so we have database and some other extensions loaded diff --git a/nixos/tests/php/httpd.nix b/nixos/tests/php/httpd.nix index 1092e0ecadd..27ea7a24e3a 100644 --- a/nixos/tests/php/httpd.nix +++ b/nixos/tests/php/httpd.nix @@ -21,7 +21,7 @@ import ../make-test-python.nix ({pkgs, lib, ...}: { machine.wait_for_unit("httpd.service") # Check so we get an evaluated PHP back - response = machine.succeed("curl -vvv -s http://127.0.0.1:80/") + response = machine.succeed("curl -fvvv -s http://127.0.0.1:80/") assert "PHP Version ${pkgs.php.version}" in response, "PHP version not detected" # Check so we have database and some other extensions loaded diff --git a/nixos/tests/php/pcre.nix b/nixos/tests/php/pcre.nix index 3dd0964e60f..3ea19304bff 100644 --- a/nixos/tests/php/pcre.nix +++ b/nixos/tests/php/pcre.nix @@ -32,7 +32,7 @@ in import ../make-test-python.nix ({lib, ...}: { '' machine.wait_for_unit("httpd.service") # Ensure php evaluation by matching on the var_dump syntax - response = machine.succeed("curl -vvv -s http://127.0.0.1:80/index.php") + response = machine.succeed("curl -fvvv -s http://127.0.0.1:80/index.php") expected = 'string(${toString (builtins.stringLength testString)}) "${testString}"' assert expected in response, "Does not appear to be able to use subgroups." ''; diff --git a/nixos/tests/powerdns.nix b/nixos/tests/powerdns.nix index 75d71315e64..d025934ad2b 100644 --- a/nixos/tests/powerdns.nix +++ b/nixos/tests/powerdns.nix @@ -1,13 +1,65 @@ -import ./make-test-python.nix ({ pkgs, ... }: { +# This test runs PowerDNS authoritative server with the +# generic MySQL backend (gmysql) to connect to a +# MariaDB server using UNIX sockets authentication. + +import ./make-test-python.nix ({ pkgs, lib, ... }: { name = "powerdns"; nodes.server = { ... }: { services.powerdns.enable = true; - environment.systemPackages = [ pkgs.dnsutils ]; + services.powerdns.extraConfig = '' + launch=gmysql + gmysql-user=pdns + ''; + + services.mysql = { + enable = true; + package = pkgs.mariadb; + ensureDatabases = [ "powerdns" ]; + ensureUsers = lib.singleton + { name = "pdns"; + ensurePermissions = { "powerdns.*" = "ALL PRIVILEGES"; }; + }; + }; + + environment.systemPackages = with pkgs; + [ dnsutils powerdns mariadb ]; }; testScript = '' - server.wait_for_unit("pdns") - server.succeed("dig version.bind txt chaos \@127.0.0.1") + import re + + with subtest("PowerDNS database exists"): + server.wait_for_unit("mysql") + server.succeed("echo 'SHOW DATABASES;' | sudo -u pdns mysql -u pdns >&2") + + with subtest("Loading the MySQL schema works"): + server.succeed( + "sudo -u pdns mysql -u pdns -D powerdns <" + "${pkgs.powerdns}/share/doc/pdns/schema.mysql.sql" + ) + + with subtest("PowerDNS server starts"): + server.wait_for_unit("pdns") + server.succeed("dig version.bind txt chaos @127.0.0.1 >&2") + + with subtest("Adding an example zone works"): + # Extract configuration file needed by pdnsutil + unit = server.succeed("systemctl cat pdns") + conf = re.search("(--config-dir=[^ ]+)", unit).group(1) + pdnsutil = "sudo -u pdns pdnsutil " + conf + server.succeed(f"{pdnsutil} create-zone example.com ns1.example.com") + server.succeed(f"{pdnsutil} add-record example.com ns1 A 192.168.1.2") + + with subtest("Querying the example zone works"): + reply = server.succeed("dig +noall +answer ns1.example.com @127.0.0.1") + assert ( + "192.168.1.2" in reply + ), f"""" + The reply does not contain the expected IP address: + Expected: + ns1.example.com. 3600 IN A 192.168.1.2 + Reply: + {reply}""" ''; }) diff --git a/nixos/tests/prometheus-exporters.nix b/nixos/tests/prometheus-exporters.nix index ad2fff2b01f..2553f5dcf74 100644 --- a/nixos/tests/prometheus-exporters.nix +++ b/nixos/tests/prometheus-exporters.nix @@ -563,6 +563,37 @@ let ''; }; + rtl_433 = { + exporterConfig = { + enable = true; + }; + metricProvider = { + # Mock rtl_433 binary to return a dummy metric stream. + nixpkgs.overlays = [ (self: super: { + rtl_433 = self.runCommand "rtl_433" {} '' + mkdir -p "$out/bin" + cat < "$out/bin/rtl_433" + #!/bin/sh + while true; do + printf '{"time" : "2020-04-26 13:37:42", "model" : "zopieux", "id" : 55, "channel" : 3, "temperature_C" : 18.000}\n' + sleep 4 + done + EOF + chmod +x "$out/bin/rtl_433" + ''; + }) ]; + }; + exporterTest = '' + wait_for_unit("prometheus-rtl_433-exporter.service") + wait_for_open_port(9550) + wait_until_succeeds( + "curl -sSf localhost:9550/metrics | grep -q '{}'".format( + 'rtl_433_temperature_celsius{channel="3",id="55",location="",model="zopieux"} 18' + ) + ) + ''; + }; + snmp = { exporterConfig = { enable = true; diff --git a/nixos/tests/prometheus.nix b/nixos/tests/prometheus.nix index af2aa66a552..de1d10aa7ca 100644 --- a/nixos/tests/prometheus.nix +++ b/nixos/tests/prometheus.nix @@ -193,13 +193,13 @@ in import ./make-test-python.nix { # Check if prometheus responds to requests: prometheus.wait_for_unit("prometheus.service") prometheus.wait_for_open_port(${toString queryPort}) - prometheus.succeed("curl -s http://127.0.0.1:${toString queryPort}/metrics") + prometheus.succeed("curl -sf http://127.0.0.1:${toString queryPort}/metrics") # Let's test if pushing a metric to the pushgateway succeeds: prometheus.wait_for_unit("pushgateway.service") prometheus.succeed( "echo 'some_metric 3.14' | " - + "curl --data-binary \@- " + + "curl -f --data-binary \@- " + "http://127.0.0.1:${toString pushgwPort}/metrics/job/some_job" ) diff --git a/nixos/tests/sanoid.nix b/nixos/tests/sanoid.nix index 284b38932cc..66ddaad60ea 100644 --- a/nixos/tests/sanoid.nix +++ b/nixos/tests/sanoid.nix @@ -38,7 +38,7 @@ in { services.syncoid = { enable = true; - sshKey = "/root/.ssh/id_ecdsa"; + sshKey = "/var/lib/syncoid/id_ecdsa"; commonArgs = [ "--no-sync-snap" ]; commands."pool/test".target = "root@target:pool/test"; }; @@ -69,11 +69,12 @@ in { "udevadm settle", ) - source.succeed("mkdir -m 700 /root/.ssh") source.succeed( - "cat '${snakeOilPrivateKey}' > /root/.ssh/id_ecdsa" + "mkdir -m 700 -p /var/lib/syncoid", + "cat '${snakeOilPrivateKey}' > /var/lib/syncoid/id_ecdsa", + "chmod 600 /var/lib/syncoid/id_ecdsa", + "chown -R syncoid:syncoid /var/lib/syncoid/", ) - source.succeed("chmod 600 /root/.ssh/id_ecdsa") source.succeed("touch /tmp/mnt/test.txt") source.systemctl("start --wait sanoid.service") diff --git a/nixos/tests/service-runner.nix b/nixos/tests/service-runner.nix index 39ae66fe111..55fbbb72934 100644 --- a/nixos/tests/service-runner.nix +++ b/nixos/tests/service-runner.nix @@ -29,7 +29,7 @@ import ./make-test-python.nix ({ pkgs, ... }: { """ ) machine.wait_for_open_port(80) - machine.succeed(f"curl {url}") + machine.succeed(f"curl -f {url}") machine.succeed("kill -INT $(cat my-nginx.pid)") machine.wait_for_closed_port(80) ''; diff --git a/nixos/tests/spacecookie.nix b/nixos/tests/spacecookie.nix index 6eff32a2e75..5b5022a7427 100644 --- a/nixos/tests/spacecookie.nix +++ b/nixos/tests/spacecookie.nix @@ -32,7 +32,7 @@ in ${gopherHost}.wait_for_unit("spacecookie.service") client.wait_for_unit("network.target") - fileResponse = client.succeed("curl -s gopher://${gopherHost}//${fileName}") + fileResponse = client.succeed("curl -f -s gopher://${gopherHost}//${fileName}") # the file response should return our created file exactly if not (fileResponse == "${fileContent}\n"): @@ -41,7 +41,7 @@ in # sanity check on the directory listing: we serve a directory and a file # via gopher, so the directory listing should have exactly two entries, # one with gopher file type 0 (file) and one with file type 1 (directory). - dirResponse = client.succeed("curl -s gopher://${gopherHost}") + dirResponse = client.succeed("curl -f -s gopher://${gopherHost}") dirEntries = [l[0] for l in dirResponse.split("\n") if len(l) > 0] dirEntries.sort() diff --git a/nixos/tests/sslh.nix b/nixos/tests/sslh.nix index 2a800aa52d0..17094606e8e 100644 --- a/nixos/tests/sslh.nix +++ b/nixos/tests/sslh.nix @@ -78,6 +78,6 @@ import ./make-test-python.nix { server.succeed(f"grep '{ip}' /tmp/foo{arg}") # check that http through sslh works - assert client.succeed(f"curl {arg} http://server:443").strip() == "hello world" + assert client.succeed(f"curl -f {arg} http://server:443").strip() == "hello world" ''; } diff --git a/nixos/tests/sympa.nix b/nixos/tests/sympa.nix index 280691f7cb4..eb38df180a7 100644 --- a/nixos/tests/sympa.nix +++ b/nixos/tests/sympa.nix @@ -30,7 +30,7 @@ import ./make-test-python.nix ({ pkgs, lib, ... }: { machine.wait_for_unit("sympa.service") machine.wait_for_unit("wwsympa.service") assert "Mailing lists service" in machine.succeed( - "curl --insecure -L http://localhost/" + "curl --fail --insecure -L http://localhost/" ) ''; }) diff --git a/nixos/tests/syncthing-relay.nix b/nixos/tests/syncthing-relay.nix index cd72ef1cbe1..c144bf7fca3 100644 --- a/nixos/tests/syncthing-relay.nix +++ b/nixos/tests/syncthing-relay.nix @@ -19,7 +19,7 @@ import ./make-test-python.nix ({ lib, pkgs, ... }: { machine.wait_for_open_port(12346) out = machine.succeed( - "curl -sS http://localhost:12346/status | jq -r '.options.\"provided-by\"'" + "curl -sSf http://localhost:12346/status | jq -r '.options.\"provided-by\"'" ) assert "nixos-test" in out ''; diff --git a/nixos/tests/syncthing.nix b/nixos/tests/syncthing.nix index 9e2a8e01e3f..ac9df5e50c8 100644 --- a/nixos/tests/syncthing.nix +++ b/nixos/tests/syncthing.nix @@ -25,7 +25,7 @@ import ./make-test-python.nix ({ lib, pkgs, ... }: { "xmllint --xpath 'string(configuration/gui/apikey)' %s/config.xml" % confdir ).strip() oldConf = host.succeed( - "curl -Ss -H 'X-API-Key: %s' 127.0.0.1:8384/rest/system/config" % APIKey + "curl -Ssf -H 'X-API-Key: %s' 127.0.0.1:8384/rest/system/config" % APIKey ) conf = json.loads(oldConf) conf["devices"].append({"deviceID": deviceID, "id": name}) @@ -39,7 +39,7 @@ import ./make-test-python.nix ({ lib, pkgs, ... }: { ) newConf = json.dumps(conf) host.succeed( - "curl -Ss -H 'X-API-Key: %s' 127.0.0.1:8384/rest/system/config -d %s" + "curl -Ssf -H 'X-API-Key: %s' 127.0.0.1:8384/rest/system/config -d %s" % (APIKey, shlex.quote(newConf)) ) diff --git a/nixos/tests/trac.nix b/nixos/tests/trac.nix index 7953f8d41f7..af7182d1e18 100644 --- a/nixos/tests/trac.nix +++ b/nixos/tests/trac.nix @@ -14,6 +14,6 @@ import ./make-test-python.nix ({ pkgs, ... }: { start_all() machine.wait_for_unit("trac.service") machine.wait_for_open_port(8000) - machine.wait_until_succeeds("curl -L http://localhost:8000/ | grep 'Trac Powered'") + machine.wait_until_succeeds("curl -fL http://localhost:8000/ | grep 'Trac Powered'") ''; }) diff --git a/nixos/tests/trezord.nix b/nixos/tests/trezord.nix index b7b3dd31942..7c8370f409e 100644 --- a/nixos/tests/trezord.nix +++ b/nixos/tests/trezord.nix @@ -14,6 +14,6 @@ import ./make-test-python.nix ({ pkgs, ... }: { start_all() machine.wait_for_unit("trezord.service") machine.wait_for_open_port(21325) - machine.wait_until_succeeds("curl -L http://localhost:21325/status/ | grep Version") + machine.wait_until_succeeds("curl -fL http://localhost:21325/status/ | grep Version") ''; }) diff --git a/nixos/tests/trickster.nix b/nixos/tests/trickster.nix index 713ac8f0b2f..e32f919a1ad 100644 --- a/nixos/tests/trickster.nix +++ b/nixos/tests/trickster.nix @@ -19,19 +19,19 @@ import ./make-test-python.nix ({ pkgs, ... }: { prometheus.wait_for_unit("prometheus.service") prometheus.wait_for_open_port(9090) prometheus.wait_until_succeeds( - "curl -L http://localhost:9090/metrics | grep 'promhttp_metric_handler_requests_total{code=\"500\"} 0'" + "curl -fL http://localhost:9090/metrics | grep 'promhttp_metric_handler_requests_total{code=\"500\"} 0'" ) trickster.wait_for_unit("trickster.service") trickster.wait_for_open_port(8082) trickster.wait_for_open_port(9090) trickster.wait_until_succeeds( - "curl -L http://localhost:8082/metrics | grep 'promhttp_metric_handler_requests_total{code=\"500\"} 0'" + "curl -fL http://localhost:8082/metrics | grep 'promhttp_metric_handler_requests_total{code=\"500\"} 0'" ) trickster.wait_until_succeeds( - "curl -L http://prometheus:9090/metrics | grep 'promhttp_metric_handler_requests_total{code=\"500\"} 0'" + "curl -fL http://prometheus:9090/metrics | grep 'promhttp_metric_handler_requests_total{code=\"500\"} 0'" ) trickster.wait_until_succeeds( - "curl -L http://localhost:9090/metrics | grep 'promhttp_metric_handler_requests_total{code=\"500\"} 0'" + "curl -fL http://localhost:9090/metrics | grep 'promhttp_metric_handler_requests_total{code=\"500\"} 0'" ) ''; }) diff --git a/nixos/tests/upnp.nix b/nixos/tests/upnp.nix index a7d837ea070..046c0a56b2a 100644 --- a/nixos/tests/upnp.nix +++ b/nixos/tests/upnp.nix @@ -90,7 +90,7 @@ in client1.succeed("upnpc -a ${internalClient1Address} 9000 9000 TCP") client1.wait_for_unit("httpd") - client2.wait_until_succeeds("curl http://${externalRouterAddress}:9000/") + client2.wait_until_succeeds("curl -f http://${externalRouterAddress}:9000/") ''; }) diff --git a/nixos/tests/uwsgi.nix b/nixos/tests/uwsgi.nix index 78a87147f55..7f4945a8803 100644 --- a/nixos/tests/uwsgi.nix +++ b/nixos/tests/uwsgi.nix @@ -33,6 +33,6 @@ import ./make-test-python.nix ({ pkgs, ... }: machine.wait_for_unit("multi-user.target") machine.wait_for_unit("uwsgi.service") machine.wait_for_open_port(8000) - assert "Hello World" in machine.succeed("curl -v 127.0.0.1:8000") + assert "Hello World" in machine.succeed("curl -fv 127.0.0.1:8000") ''; }) diff --git a/nixos/tests/victoriametrics.nix b/nixos/tests/victoriametrics.nix index 73ef8b72861..fff8d7005da 100644 --- a/nixos/tests/victoriametrics.nix +++ b/nixos/tests/victoriametrics.nix @@ -19,9 +19,11 @@ import ./make-test-python.nix ({ pkgs, ...} : { # write some points and run simple query out = one.succeed( - "curl -d 'measurement,tag1=value1,tag2=value2 field1=123,field2=1.23' -X POST 'http://localhost:8428/write'" + "curl -f -d 'measurement,tag1=value1,tag2=value2 field1=123,field2=1.23' -X POST 'http://localhost:8428/write'" + ) + cmd = ( + """curl -f -s -G 'http://localhost:8428/api/v1/export' -d 'match={__name__!=""}'""" ) - cmd = """curl -s -G 'http://localhost:8428/api/v1/export' -d 'match={__name__!=""}'""" # data takes a while to appear one.wait_until_succeeds(f"[[ $({cmd} | wc -l) -ne 0 ]]") out = one.succeed(cmd) diff --git a/nixos/tests/web-servers/unit-php.nix b/nixos/tests/web-servers/unit-php.nix index 2a0a5bdaa5d..033036ee766 100644 --- a/nixos/tests/web-servers/unit-php.nix +++ b/nixos/tests/web-servers/unit-php.nix @@ -47,7 +47,7 @@ in { machine.wait_for_unit("unit.service") # Check so we get an evaluated PHP back - response = machine.succeed("curl -vvv -s http://127.0.0.1:9074/") + response = machine.succeed("curl -f -vvv -s http://127.0.0.1:9074/") assert "PHP Version ${pkgs.unit.usedPhp74.version}" in response, "PHP version not detected" # Check so we have database and some other extensions loaded diff --git a/nixos/tests/wordpress.nix b/nixos/tests/wordpress.nix index b7449859f7e..5d740502bb5 100644 --- a/nixos/tests/wordpress.nix +++ b/nixos/tests/wordpress.nix @@ -40,7 +40,7 @@ import ./make-test-python.nix ({ pkgs, ... }: with subtest("website returns welcome screen"): for site_name in site_names: - assert "Welcome to the famous" in machine.succeed(f"curl -L {site_name}") + assert "Welcome to the famous" in machine.succeed(f"curl -fL {site_name}") with subtest("wordpress-init went through"): for site_name in site_names: diff --git a/pkgs/applications/audio/asunder/default.nix b/pkgs/applications/audio/asunder/default.nix index 998535a8eb0..610085a137a 100644 --- a/pkgs/applications/audio/asunder/default.nix +++ b/pkgs/applications/audio/asunder/default.nix @@ -12,11 +12,11 @@ with stdenv.lib; stdenv.mkDerivation rec { - version = "2.9.6"; + version = "2.9.7"; pname = "asunder"; src = fetchurl { url = "http://littlesvr.ca/asunder/releases/${pname}-${version}.tar.bz2"; - sha256 = "1ycnd82lh7qy1pcbngd4b41s16j9hnm2kyfrncg4cwr3bfk7yg7a"; + sha256 = "1x3l308ss0iqhz90qyjb94gyd8b4piyrm2nzjmg5kf049k9prjf1"; }; nativeBuildInputs = [ intltool makeWrapper pkgconfig ]; diff --git a/pkgs/applications/audio/cantata/default.nix b/pkgs/applications/audio/cantata/default.nix index df19ac94228..85806ca9a0d 100644 --- a/pkgs/applications/audio/cantata/default.nix +++ b/pkgs/applications/audio/cantata/default.nix @@ -31,7 +31,7 @@ assert withReplaygain -> withTaglib; assert withLibVlc -> withHttpStream; let - version = "2.4.1"; + version = "2.4.2"; pname = "cantata"; fstat = x: fn: "-DENABLE_" + fn + "=" + (if x then "ON" else "OFF"); fstats = x: map (fstat x); @@ -47,7 +47,7 @@ in mkDerivation { owner = "CDrummond"; repo = "cantata"; rev = "v${version}"; - sha256 = "0ix7xp352bziwz31mw79y7wxxmdn6060p8ry2px243ni1lz1qx1c"; + sha256 = "15qfx9bpfdplxxs08inwf2j8kvf7g5cln5sv1wj1l2l41vbf1mjr"; }; patches = [ diff --git a/pkgs/applications/audio/cava/default.nix b/pkgs/applications/audio/cava/default.nix index 26cc8cd78da..a92a5325f16 100644 --- a/pkgs/applications/audio/cava/default.nix +++ b/pkgs/applications/audio/cava/default.nix @@ -3,7 +3,7 @@ stdenv.mkDerivation rec { pname = "cava"; - version = "0.7.2"; + version = "0.7.3"; buildInputs = [ alsaLib @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { owner = "karlstav"; repo = "cava"; rev = version; - sha256 = "1chc08spjf5i17n8y48aqzdxsj8vvf0r2l62ldw2pqgw60dacvs1"; + sha256 = "04j5hb29hivcbk542sfsx9m57dbnj2s6qpvy9fs488zvgjbgxrai"; }; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/applications/audio/cozy-audiobooks/default.nix b/pkgs/applications/audio/cozy-audiobooks/default.nix index a5947bd37f1..1a78b783f53 100644 --- a/pkgs/applications/audio/cozy-audiobooks/default.nix +++ b/pkgs/applications/audio/cozy-audiobooks/default.nix @@ -20,7 +20,7 @@ python3Packages.buildPythonApplication rec { format = "other"; # no setup.py pname = "cozy"; - version = "0.6.7"; + version = "0.7.2"; # Temporary fix # See https://github.com/NixOS/nixpkgs/issues/57029 @@ -31,7 +31,7 @@ python3Packages.buildPythonApplication rec { owner = "geigi"; repo = pname; rev = version; - sha256 = "0f8dyqj6111czn8spgsnic1fqs3kimjwl1b19mw55fa924b9bhsa"; + sha256 = "0fmbddi4ga0bppwg3rm3yjmf7jgqc6zfslmavnr1pglbzkjhy9fs"; }; nativeBuildInputs = [ @@ -55,18 +55,23 @@ python3Packages.buildPythonApplication rec { ]); propagatedBuildInputs = with python3Packages; [ - gst-python - pygobject3 + apsw + cairo dbus-python - mutagen - peewee + distro + gst-python magic + mutagen + packaging + peewee + pygobject3 + pytz + requests ]; postPatch = '' - chmod +x data/meson_post_install.py - patchShebangs data/meson_post_install.py - substituteInPlace cozy/magic/magic.py --replace "ctypes.util.find_library('magic')" "'${file}/lib/libmagic${stdenv.hostPlatform.extensions.sharedLibrary}'" + chmod +x meson/post_install.py + patchShebangs meson/post_install.py ''; postInstall = '' diff --git a/pkgs/applications/audio/csound/csound-qt/default.nix b/pkgs/applications/audio/csound/csound-qt/default.nix index 895609d3c02..e6060c056cc 100644 --- a/pkgs/applications/audio/csound/csound-qt/default.nix +++ b/pkgs/applications/audio/csound/csound-qt/default.nix @@ -41,7 +41,7 @@ stdenv.mkDerivation rec { ]; meta = with stdenv.lib; { - description = "CsoundQt is a frontend for Csound with editor, integrated help, widgets and other features."; + description = "CsoundQt is a frontend for Csound with editor, integrated help, widgets and other features"; homepage = "https://csoundqt.github.io/"; license = licenses.gpl2; platforms = platforms.linux; diff --git a/pkgs/applications/audio/ecasound/default.nix b/pkgs/applications/audio/ecasound/default.nix index 13c48fc12af..adb6f6b7427 100644 --- a/pkgs/applications/audio/ecasound/default.nix +++ b/pkgs/applications/audio/ecasound/default.nix @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { buildInputs = [ alsaLib audiofile libjack2 liblo liboil libsamplerate libsndfile lilv lv2 ]; meta = { - description = "Ecasound is a software package designed for multitrack audio processing"; + description = "Software package designed for multitrack audio processing"; license = with stdenv.lib.licenses; [ gpl2 lgpl21 ]; homepage = "http://nosignal.fi/ecasound/"; }; diff --git a/pkgs/applications/audio/eflite/default.nix b/pkgs/applications/audio/eflite/default.nix index f9a579512ca..30a35501771 100644 --- a/pkgs/applications/audio/eflite/default.nix +++ b/pkgs/applications/audio/eflite/default.nix @@ -37,7 +37,7 @@ stdenv.mkDerivation rec { meta = { homepage = "http://eflite.sourceforge.net"; - description = "EFlite is a speech server for screen readers"; + description = "Speech server for screen readers"; longDescription = '' EFlite is a speech server for Emacspeak and other screen readers that allows them to interface with Festival Lite, diff --git a/pkgs/applications/audio/faust/faust2jack.nix b/pkgs/applications/audio/faust/faust2jack.nix index 0f703704961..dd4cdd29c66 100644 --- a/pkgs/applications/audio/faust/faust2jack.nix +++ b/pkgs/applications/audio/faust/faust2jack.nix @@ -2,7 +2,7 @@ , gtk2 , jack2Full , alsaLib -, opencv2 +, opencv , libsndfile , which }: @@ -20,7 +20,7 @@ faust.wrapWithBuildEnv { gtk2 jack2Full alsaLib - opencv2 + opencv libsndfile which ]; diff --git a/pkgs/applications/audio/faust/faust2jaqt.nix b/pkgs/applications/audio/faust/faust2jaqt.nix index 753208c54c2..76e4b5ce8db 100644 --- a/pkgs/applications/audio/faust/faust2jaqt.nix +++ b/pkgs/applications/audio/faust/faust2jaqt.nix @@ -1,6 +1,5 @@ { faust , jack2Full -, opencv2 , qt4 , libsndfile , alsaLib @@ -18,7 +17,6 @@ faust.wrapWithBuildEnv { propagatedBuildInputs = [ jack2Full - opencv2 qt4 libsndfile alsaLib diff --git a/pkgs/applications/audio/ft2-clone/default.nix b/pkgs/applications/audio/ft2-clone/default.nix index bcdc1fe719c..4eae53e0542 100644 --- a/pkgs/applications/audio/ft2-clone/default.nix +++ b/pkgs/applications/audio/ft2-clone/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "ft2-clone"; - version = "1.31"; + version = "1.36"; src = fetchFromGitHub { owner = "8bitbubsy"; repo = "ft2-clone"; rev = "v${version}"; - sha256 = "02j876d4xmbdmqairrs5190dzdm3k4s5hi3g9wvx62cxnnw7igha"; + sha256 = "0hsgzh7s2qgl8ah8hzmhfl74v5y8wc7f6z8ly9026h5r6pb09id0"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/audio/geonkick/default.nix b/pkgs/applications/audio/geonkick/default.nix index e32bef008d9..0da00d31972 100644 --- a/pkgs/applications/audio/geonkick/default.nix +++ b/pkgs/applications/audio/geonkick/default.nix @@ -1,14 +1,15 @@ -{ stdenv, fetchFromGitLab, cmake, pkg-config, redkite, libsndfile, rapidjson, libjack2, lv2, libX11, cairo }: +{ stdenv, fetchFromGitLab, cmake, pkg-config, redkite, libsndfile, rapidjson +, libjack2, lv2, libX11, cairo }: stdenv.mkDerivation rec { pname = "geonkick"; - version = "2.3.8"; + version = "2.4.0"; src = fetchFromGitLab { owner = "iurie-sw"; repo = pname; rev = "v${version}"; - sha256 = "07809yy2q7dd6fcp0yndlg1vw2ca2zisnsplb3xrxvzdvrqlw910"; + sha256 = "1ibsfyzkvzijv929p91db56gaxm582b7nikbn10wbbjvv4f46mmj"; }; nativeBuildInputs = [ cmake pkg-config ]; @@ -16,13 +17,16 @@ stdenv.mkDerivation rec { buildInputs = [ redkite libsndfile rapidjson libjack2 lv2 libX11 cairo ]; # https://github.com/iurie-sw/geonkick/issues/120 - cmakeFlags = [ "-DGKICK_REDKITE_SDK_PATH=${redkite}" "-DCMAKE_INSTALL_LIBDIR=lib" ]; + cmakeFlags = [ + "-DGKICK_REDKITE_SDK_PATH=${redkite}" + "-DCMAKE_INSTALL_LIBDIR=lib" + ]; - meta = { + meta = with stdenv.lib; { homepage = "https://gitlab.com/iurie-sw/geonkick"; description = "A free software percussion synthesizer"; - license = stdenv.lib.licenses.gpl3Plus; - platforms = stdenv.lib.platforms.linux; - maintainers = [ stdenv.lib.maintainers.magnetophon ]; + license = licenses.gpl3Plus; + platforms = platforms.linux; + maintainers = [ maintainers.magnetophon ]; }; } diff --git a/pkgs/applications/audio/gspeech/default.nix b/pkgs/applications/audio/gspeech/default.nix index 920c06038fe..21a4d6748be 100644 --- a/pkgs/applications/audio/gspeech/default.nix +++ b/pkgs/applications/audio/gspeech/default.nix @@ -63,7 +63,7 @@ python3.pkgs.buildPythonApplication rec { strictDeps = false; meta = with lib; { - description = "A minimal GUI for the Text To Speech 'Svox Pico'. Read clipboard or selected text in different languages and manage it : pause, stop, replay."; + description = "A minimal GUI for the Text To Speech 'Svox Pico'. Read clipboard or selected text in different languages and manage it : pause, stop, replay"; homepage = "https://github.com/mothsART/gSpeech"; maintainers = with maintainers; [ mothsart ]; license = licenses.gpl3; diff --git a/pkgs/applications/audio/jamin/default.nix b/pkgs/applications/audio/jamin/default.nix index a9b423320a0..57caf4672d3 100644 --- a/pkgs/applications/audio/jamin/default.nix +++ b/pkgs/applications/audio/jamin/default.nix @@ -2,11 +2,12 @@ , makeWrapper, pkgconfig, perlPackages }: -stdenv.mkDerivation { - name = "jamin-0.95.0"; +stdenv.mkDerivation rec { + version = "0.95.0"; + name = "jamin-${version}"; src = fetchurl { - url = "mirror://sourceforge/jamin/jamin-0.95.0.tar.gz"; + url = "mirror://sourceforge/jamin/jamin-${version}.tar.gz"; sha256 = "0g5v74cm0q3p3pzl6xmnp4rqayaymfli7c6z8s78h9rgd24fwbvn"; }; diff --git a/pkgs/applications/audio/mamba/default.nix b/pkgs/applications/audio/mamba/default.nix index 6229cb3a80d..23a94668ded 100644 --- a/pkgs/applications/audio/mamba/default.nix +++ b/pkgs/applications/audio/mamba/default.nix @@ -5,6 +5,7 @@ , fluidsynth , libX11 , libjack2 +, alsaLib , liblo , libsigcxx , libsmf @@ -12,18 +13,18 @@ stdenv.mkDerivation rec { pname = "mamba"; - version = "1.5"; + version = "1.6"; src = fetchFromGitHub { owner = "brummer10"; repo = "Mamba"; rev = "v${version}"; - sha256 = "1l74ckqqrccgsdy430pfsbv4fbzny7zivx399bi2jk1lv06p4h9a"; + sha256 = "02w47347cbfqxybh908ww5ifd9jcns8v0msycq59y9q7x0a2h6fh"; fetchSubmodules = true; }; nativeBuildInputs = [ pkg-config ]; - buildInputs = [ cairo fluidsynth libX11 libjack2 liblo libsigcxx libsmf ]; + buildInputs = [ cairo fluidsynth libX11 libjack2 alsaLib liblo libsigcxx libsmf ]; makeFlags = [ "PREFIX=$(out)" ]; diff --git a/pkgs/applications/audio/mellowplayer/default.nix b/pkgs/applications/audio/mellowplayer/default.nix index a117611fdfa..26736ea3e8a 100644 --- a/pkgs/applications/audio/mellowplayer/default.nix +++ b/pkgs/applications/audio/mellowplayer/default.nix @@ -62,7 +62,7 @@ mkDerivation rec { meta = with lib; { inherit (qtbase.meta) platforms; - description = "Cloud music integration for your desktop."; + description = "Cloud music integration for your desktop"; homepage = "https://gitlab.com/ColinDuquesnoy/MellowPlayer"; license = licenses.gpl2; maintainers = with maintainers; [ kalbasit ]; diff --git a/pkgs/applications/audio/mopidy/default.nix b/pkgs/applications/audio/mopidy/default.nix index 23322ca5663..fc532482cba 100644 --- a/pkgs/applications/audio/mopidy/default.nix +++ b/pkgs/applications/audio/mopidy/default.nix @@ -14,9 +14,7 @@ let mopidy-gmusic = callPackage ./gmusic.nix { }; - mopidy-local-images = callPackage ./local-images.nix { }; - - mopidy-local-sqlite = callPackage ./local-sqlite.nix { }; + mopidy-local = callPackage ./local.nix { }; mopidy-spotify = callPackage ./spotify.nix { }; diff --git a/pkgs/applications/audio/mopidy/iris.nix b/pkgs/applications/audio/mopidy/iris.nix index 467ba6fe3f7..48f955fd713 100644 --- a/pkgs/applications/audio/mopidy/iris.nix +++ b/pkgs/applications/audio/mopidy/iris.nix @@ -1,4 +1,4 @@ -{ stdenv, python3Packages, mopidy, mopidy-local-images }: +{ stdenv, python3Packages, mopidy }: python3Packages.buildPythonApplication rec { pname = "Mopidy-Iris"; diff --git a/pkgs/applications/audio/mopidy/local-images.nix b/pkgs/applications/audio/mopidy/local-images.nix deleted file mode 100644 index 085fe855e8a..00000000000 --- a/pkgs/applications/audio/mopidy/local-images.nix +++ /dev/null @@ -1,32 +0,0 @@ -{ stdenv, fetchFromGitHub, pythonPackages, mopidy, gobject-introspection }: - -pythonPackages.buildPythonApplication rec { - pname = "mopidy-local-images"; - version = "1.0.0"; - - src = fetchFromGitHub { - owner = "mopidy"; - repo = "mopidy-local-images"; - rev = "v${version}"; - sha256 = "0gdqxws0jish50mmi57mlqcs659wrllzv00czl18niz94vzvyc0d"; - }; - - buildInputs = [ gobject-introspection ]; - - checkInputs = [ - pythonPackages.mock - ]; - - propagatedBuildInputs = [ - mopidy - pythonPackages.pykka - pythonPackages.uritools - ]; - - meta = with stdenv.lib; { - homepage = "https://github.com/mopidy/mopidy-local-images"; - description = "Mopidy local library proxy extension for handling embedded album art"; - license = licenses.asl20; - maintainers = [ maintainers.rvolosatovs ]; - }; -} diff --git a/pkgs/applications/audio/mopidy/local-sqlite.nix b/pkgs/applications/audio/mopidy/local-sqlite.nix deleted file mode 100644 index 23e01c02a0f..00000000000 --- a/pkgs/applications/audio/mopidy/local-sqlite.nix +++ /dev/null @@ -1,25 +0,0 @@ -{ stdenv, fetchFromGitHub, pythonPackages, mopidy }: - -pythonPackages.buildPythonApplication rec { - pname = "mopidy-local-sqlite"; - version = "1.0.0"; - - src = fetchFromGitHub { - owner = "mopidy"; - repo = "mopidy-local-sqlite"; - rev = "v${version}"; - sha256 = "1fjd9ydbfwd1n9b9zw8zjn4l7c5hpam2n0xs51pjkjn82m3zq9zv"; - }; - - propagatedBuildInputs = [ - mopidy - pythonPackages.uritools - ]; - - meta = with stdenv.lib; { - homepage = "https://github.com/mopidy/mopidy-local-sqlite"; - description = "Mopidy SQLite local library extension"; - license = licenses.asl20; - maintainers = [ maintainers.rvolosatovs ]; - }; -} diff --git a/pkgs/applications/audio/mopidy/local.nix b/pkgs/applications/audio/mopidy/local.nix new file mode 100644 index 00000000000..43554280565 --- /dev/null +++ b/pkgs/applications/audio/mopidy/local.nix @@ -0,0 +1,30 @@ +{ lib +, mopidy +, python3Packages +}: + +python3Packages.buildPythonApplication rec { + pname = "Mopidy-Local"; + version = "3.1.1"; + + src = python3Packages.fetchPypi { + inherit pname version; + sha256 = "13m0iz14lyplnpm96gfpisqvv4n89ls30kmkg21z7v238lm0h19j"; + }; + + propagatedBuildInputs = [ + mopidy + python3Packages.uritools + ]; + + checkInputs = [ + python3Packages.pytestCheckHook + ]; + + meta = with lib; { + homepage = "https://github.com/mopidy/mopidy-local"; + description = "Mopidy extension for playing music from your local music archive"; + license = licenses.asl20; + maintainers = with maintainers; [ ruuda ]; + }; +} diff --git a/pkgs/applications/audio/mopidy/mopidy.nix b/pkgs/applications/audio/mopidy/mopidy.nix index 28216020b78..eb5672fe135 100644 --- a/pkgs/applications/audio/mopidy/mopidy.nix +++ b/pkgs/applications/audio/mopidy/mopidy.nix @@ -16,13 +16,24 @@ pythonPackages.buildPythonApplication rec { nativeBuildInputs = [ wrapGAppsHook ]; buildInputs = with gst_all_1; [ - gst-plugins-base gst-plugins-good gst-plugins-ugly gst-plugins-bad - glib-networking gobject-introspection + glib-networking + gst-plugins-bad + gst-plugins-base + gst-plugins-good + gst-plugins-ugly ]; - propagatedBuildInputs = with pythonPackages; [ - gst-python pygobject3 pykka tornado requests setuptools - ] ++ stdenv.lib.optional (!stdenv.isDarwin) dbus-python; + propagatedBuildInputs = [ + gobject-introspection + ] ++ (with pythonPackages; [ + gst-python + pygobject3 + pykka + requests + setuptools + tornado + ] ++ stdenv.lib.optional (!stdenv.isDarwin) dbus-python + ); # There are no tests doCheck = false; diff --git a/pkgs/applications/audio/mopidy/mpris.nix b/pkgs/applications/audio/mopidy/mpris.nix index 16fbfab380b..1c6d841a34e 100644 --- a/pkgs/applications/audio/mopidy/mpris.nix +++ b/pkgs/applications/audio/mopidy/mpris.nix @@ -2,12 +2,12 @@ python3Packages.buildPythonApplication rec { pname = "mopidy-mpris"; - version = "3.0.1"; + version = "3.0.2"; src = python3Packages.fetchPypi { inherit version; pname = "Mopidy-MPRIS"; - sha256 = "0qk46aq5r92qgkldzl41x09naww1gv92l4c4hknyl7yymyvm9lr2"; + sha256 = "0mmdaikw00f43gzjdbvlcvzff6yppm7v8mv012r79adzd992q9y0"; }; propagatedBuildInputs = [ @@ -18,7 +18,7 @@ python3Packages.buildPythonApplication rec { doCheck = false; meta = with stdenv.lib; { - homepage = https://www.mopidy.com/; + homepage = "https://www.mopidy.com/"; description = "Mopidy extension for controlling Mopidy through D-Bus using the MPRIS specification"; license = licenses.asl20; maintainers = [ maintainers.nickhu ]; diff --git a/pkgs/applications/audio/mopidy/musicbox-webclient.nix b/pkgs/applications/audio/mopidy/musicbox-webclient.nix index b0abefd7a1f..d628e5894a2 100644 --- a/pkgs/applications/audio/mopidy/musicbox-webclient.nix +++ b/pkgs/applications/audio/mopidy/musicbox-webclient.nix @@ -2,13 +2,13 @@ pythonPackages.buildPythonApplication rec { pname = "mopidy-musicbox-webclient"; - version = "2.3.0"; + version = "2.4.0"; src = fetchFromGitHub { owner = "pimusicbox"; repo = "mopidy-musicbox-webclient"; rev = "v${version}"; - sha256 = "1jcfrwsi7axiph3jplqzmcqia9pc46xb2yf13d8h6lnh3h49rwvz"; + sha256 = "0784s32pap9rbki3f0f7swaf6946sdv4xzidns13jmw9ilifk5z4"; }; propagatedBuildInputs = [ mopidy ]; diff --git a/pkgs/applications/audio/mopidy/tunein.nix b/pkgs/applications/audio/mopidy/tunein.nix index 569d08fb4a0..9ab03232052 100644 --- a/pkgs/applications/audio/mopidy/tunein.nix +++ b/pkgs/applications/audio/mopidy/tunein.nix @@ -20,7 +20,7 @@ python3Packages.buildPythonApplication rec { pythonImportsCheck = [ "mopidy_tunein.tunein" ]; meta = with stdenv.lib; { - description = "Mopidy extension for playing music from tunein."; + description = "Mopidy extension for playing music from tunein"; homepage = "https://github.com/kingosticks/mopidy-tunein"; license = licenses.asl20; maintainers = with maintainers; [ hexa ]; diff --git a/pkgs/applications/audio/ncspot/default.nix b/pkgs/applications/audio/ncspot/default.nix index 2fcbf82107d..60fb40c5f74 100644 --- a/pkgs/applications/audio/ncspot/default.nix +++ b/pkgs/applications/audio/ncspot/default.nix @@ -14,16 +14,16 @@ let in rustPlatform.buildRustPackage rec { pname = "ncspot"; - version = "0.2.2"; + version = "0.2.4"; src = fetchFromGitHub { owner = "hrkfdn"; repo = "ncspot"; rev = "v${version}"; - sha256 = "1i17pidw2hylijwfn96f2bnswfxxwdln2ydsq8b1q4hfzfbxlfk2"; + sha256 = "0vdg1ybzfj7xg8nmrb8q9vr8bpwcs52730v9v0413wjyxb7hcll2"; }; - cargoSha256 = "1cpy4wrj9dz2crva4p18f8hzym73x4m2mcfds4ppri4ir7qg29dr"; + cargoSha256 = "0afaxx8dv7jn48934ba0r8kd1h8l3k00sl83v07a1xqmfcmil2qf"; cargoBuildFlags = [ "--no-default-features" "--features" "${lib.concatStringsSep "," features}" ]; diff --git a/pkgs/applications/audio/opustags/default.nix b/pkgs/applications/audio/opustags/default.nix new file mode 100644 index 00000000000..8e5546aec8b --- /dev/null +++ b/pkgs/applications/audio/opustags/default.nix @@ -0,0 +1,24 @@ +{ stdenv, lib, cmake, pkgconfig, libogg, fetchFromGitHub, libiconv }: +stdenv.mkDerivation rec { + pname = "opustags"; + version = "1.4.0"; + + src = fetchFromGitHub { + owner = "fmang"; + repo = "opustags"; + rev = version; + sha256 = "1y0czl72paawy342ff9ickaamkih43k59yfcdw7bnddypyfa7nbg"; + }; + + buildInputs = [ libogg ]; + + nativeBuildInputs = [ cmake pkgconfig ] ++ lib.optional stdenv.isDarwin libiconv; + + meta = with lib; { + homepage = "https://github.com/fmang/opustags"; + description = "Ogg Opus tags editor"; + platforms = platforms.all; + maintainers = [ maintainers.kmein ]; + license = licenses.bsd3; + }; +} diff --git a/pkgs/applications/audio/orca-c/default.nix b/pkgs/applications/audio/orca-c/default.nix index 3a4f4b2ce2b..74c74578beb 100644 --- a/pkgs/applications/audio/orca-c/default.nix +++ b/pkgs/applications/audio/orca-c/default.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation { ''; meta = with stdenv.lib; { - description = "An esoteric programming language designed to quickly create procedural sequencers."; + description = "An esoteric programming language designed to quickly create procedural sequencers"; homepage = "https://github.com/hundredrabbits/Orca-c"; license = licenses.mit; platforms = platforms.all; diff --git a/pkgs/applications/audio/padthv1/default.nix b/pkgs/applications/audio/padthv1/default.nix index c5d20d965b9..29ef027f2f2 100644 --- a/pkgs/applications/audio/padthv1/default.nix +++ b/pkgs/applications/audio/padthv1/default.nix @@ -1,15 +1,15 @@ -{ stdenv, fetchurl, pkgconfig, libjack2, alsaLib, libsndfile, liblo, lv2, qt5, fftw, mkDerivation }: +{ stdenv, fetchurl, pkgconfig, libjack2, alsaLib, libsndfile, liblo, lv2, qt5, fftwFloat, mkDerivation }: mkDerivation rec { pname = "padthv1"; - version = "0.9.16"; + version = "0.9.17"; src = fetchurl { url = "mirror://sourceforge/padthv1/${pname}-${version}.tar.gz"; - sha256 = "1f2v60dpja0rnml60g463fjiz0f84v32yjwpvr56z79h1i6fssmv"; + sha256 = "098fk8fwcgssnfr1gilqg8g17zvch62lrn3rqsswpzbr3an5adb3"; }; - buildInputs = [ libjack2 alsaLib libsndfile liblo lv2 qt5.qtbase qt5.qttools fftw ]; + buildInputs = [ libjack2 alsaLib libsndfile liblo lv2 qt5.qtbase qt5.qttools fftwFloat ]; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/applications/audio/picard/default.nix b/pkgs/applications/audio/picard/default.nix index d8c927be268..cf8523b4ef7 100644 --- a/pkgs/applications/audio/picard/default.nix +++ b/pkgs/applications/audio/picard/default.nix @@ -12,13 +12,13 @@ let ; in pythonPackages.buildPythonApplication rec { pname = "picard"; - version = "2.4.4"; + version = "2.5"; src = fetchFromGitHub { owner = "metabrainz"; repo = pname; rev = "release-${version}"; - sha256 = "0iw2v37j70881v0a2rjp2miq97nscq04x1ysk1dqmi1b9hi0y17q"; + sha256 = "02px6r086pyhpf6wia876c73bgr4xa4pyx2yykv6j74zyp5wig3z"; }; nativeBuildInputs = [ gettext qt5.wrapQtAppsHook qt5.qtbase ] diff --git a/pkgs/applications/audio/picoloop/default.nix b/pkgs/applications/audio/picoloop/default.nix index 1dc9c70af87..69052988f26 100644 --- a/pkgs/applications/audio/picoloop/default.nix +++ b/pkgs/applications/audio/picoloop/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { SDL2_image SDL2_ttf alsaLib - libjack2 + libjack2 ]; sourceRoot = "source/picoloop"; @@ -42,7 +42,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "Picoloop is a synth and a stepsequencer (a clone of the famous nanoloop)."; + description = "A synth and a stepsequencer (a clone of the famous nanoloop)"; homepage = "https://github.com/yoyz/picoloop"; platforms = platforms.linux; license = licenses.bsd3; diff --git a/pkgs/applications/audio/plexamp/default.nix b/pkgs/applications/audio/plexamp/default.nix index 36462aa28bc..27738245231 100644 --- a/pkgs/applications/audio/plexamp/default.nix +++ b/pkgs/applications/audio/plexamp/default.nix @@ -30,7 +30,7 @@ in appimageTools.wrapType2 { ''; meta = with lib; { - description = "A beautiful Plex music player for audiophiles, curators, and hipsters."; + description = "A beautiful Plex music player for audiophiles, curators, and hipsters"; homepage = "https://plexamp.com/"; license = licenses.unfree; maintainers = with maintainers; [ killercup ]; diff --git a/pkgs/applications/audio/puddletag/default.nix b/pkgs/applications/audio/puddletag/default.nix index 56fcdcc94cd..55cde08fe87 100644 --- a/pkgs/applications/audio/puddletag/default.nix +++ b/pkgs/applications/audio/puddletag/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, python3Packages, chromaprint }: +{ stdenv, fetchFromGitHub, python3Packages, wrapQtAppsHook, chromaprint }: python3Packages.buildPythonApplication rec { pname = "puddletag"; @@ -13,6 +13,8 @@ python3Packages.buildPythonApplication rec { sourceRoot = "source/source"; + nativeBuildInputs = [ wrapQtAppsHook ]; + propagatedBuildInputs = [ chromaprint ] ++ (with python3Packages; [ configobj mutagen @@ -20,9 +22,13 @@ python3Packages.buildPythonApplication rec { pyqt5 ]); - doCheck = false; # there are no tests + preFixup = '' + makeWrapperArgs+=("''${qtWrapperArgs[@]}") + ''; - dontStrip = true; # we are not generating any binaries + doCheck = false; # there are no tests + + dontStrip = true; # we are not generating any binaries meta = with stdenv.lib; { description = "An audio tag editor similar to the Windows program, Mp3tag"; @@ -30,6 +36,5 @@ python3Packages.buildPythonApplication rec { license = licenses.gpl3; maintainers = with maintainers; [ peterhoeg ]; platforms = platforms.linux; - broken = true; # Needs Qt wrapping }; } diff --git a/pkgs/applications/audio/pulseaudio-ctl/default.nix b/pkgs/applications/audio/pulseaudio-ctl/default.nix index 125dafc132e..6cabdc6534d 100644 --- a/pkgs/applications/audio/pulseaudio-ctl/default.nix +++ b/pkgs/applications/audio/pulseaudio-ctl/default.nix @@ -32,7 +32,7 @@ in stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "Control pulseaudio volume from the shell or mapped to keyboard shortcuts. No need for alsa-utils."; + description = "Control pulseaudio volume from the shell or mapped to keyboard shortcuts. No need for alsa-utils"; homepage = "https://bbs.archlinux.org/viewtopic.php?id=124513"; license = licenses.mit; maintainers = with maintainers; [ peterhoeg ]; diff --git a/pkgs/applications/audio/qmidinet/default.nix b/pkgs/applications/audio/qmidinet/default.nix index 479a8a2bb04..9b9b84850dc 100644 --- a/pkgs/applications/audio/qmidinet/default.nix +++ b/pkgs/applications/audio/qmidinet/default.nix @@ -1,12 +1,12 @@ { mkDerivation, lib, fetchurl, pkgconfig, qtbase, qttools, alsaLib, libjack2 }: mkDerivation rec { - version = "0.6.2"; + version = "0.6.3"; pname = "qmidinet"; src = fetchurl { url = "mirror://sourceforge/qmidinet/${pname}-${version}.tar.gz"; - sha256 = "0siqzyhwg3l9av7jbca3bqdww7xspjlpi9ya4mkj211xc3a3a1d6"; + sha256 = "04jbvnf6yp9l0bhl1ym6zqkmaz8c2az3flq7qgflaxzj3isns1p1"; }; hardeningDisable = [ "format" ]; diff --git a/pkgs/applications/audio/sayonara/default.nix b/pkgs/applications/audio/sayonara/default.nix index c4258174500..722333134d9 100644 --- a/pkgs/applications/audio/sayonara/default.nix +++ b/pkgs/applications/audio/sayonara/default.nix @@ -1,12 +1,12 @@ { mkDerivation , cmake -, fetchgit +, fetchFromGitLab , gst_all_1 , lib , libpulseaudio , ninja , pcre -, pkgconfig +, pkg-config , qtbase , qttools , taglib @@ -15,34 +15,16 @@ mkDerivation rec { pname = "sayonara-player"; - version = "1.5.1-stable5"; + version = "1.6.0-beta6"; - src = fetchgit { - url = "https://git.sayonara-player.com/sayonara.git"; + src = fetchFromGitLab { + owner = "luciocarreras"; + repo = "sayonara-player"; rev = version; - sha256 = "13l7r3gaszrkyf4z8rdijfzxvcnilax4ki2mcm30wqk8d4g4qdzj"; + sha256 = "sha256-SbJS0DQvbW++CNXbuDHQxFlLRb1kTtDdIdHOqu0YxeQ="; }; - # all this can go with version 1.5.2 - postPatch = '' - # if we don't delete this, sayonara will look here instead of the provided taglib - rm -r src/3rdParty/taglib - - for f in \ - src/DBus/DBusNotifications.cpp \ - src/Gui/Resources/Icons/CMakeLists.txt \ - src/Utils/Utils.cpp \ - test/Util/FileHelperTest.cpp \ - ; do - - substituteInPlace $f --replace /usr $out - done - - substituteInPlace src/Components/Shutdown/Shutdown.cpp \ - --replace /usr/bin/systemctl systemctl - ''; - - nativeBuildInputs = [ cmake ninja pkgconfig qttools ]; + nativeBuildInputs = [ cmake ninja pkg-config qttools ]; buildInputs = [ libpulseaudio diff --git a/pkgs/applications/audio/spectmorph/default.nix b/pkgs/applications/audio/spectmorph/default.nix index d8209dad02d..ece6689a9d0 100644 --- a/pkgs/applications/audio/spectmorph/default.nix +++ b/pkgs/applications/audio/spectmorph/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { pname = "spectmorph"; - version = "0.5.1"; + version = "0.5.2"; src = fetchurl { url = "http://spectmorph.org/files/releases/${pname}-${version}.tar.bz2"; - sha256 = "06jrfx5g9c56swxn78lix0gyrjkhi21l9wqs56knp8iqcgfi3m0s"; + sha256 = "0yrq7mknhk096wfsx0q3b6wwa2w5la0rxa113di26rrrw136xl1f"; }; buildInputs = [ libjack2 lv2 glib qt5.qtbase libao cairo libsndfile fftwFloat ]; diff --git a/pkgs/applications/audio/strawberry/default.nix b/pkgs/applications/audio/strawberry/default.nix index d6428e40312..fa6ee383c9e 100644 --- a/pkgs/applications/audio/strawberry/default.nix +++ b/pkgs/applications/audio/strawberry/default.nix @@ -35,13 +35,13 @@ mkDerivation rec { pname = "strawberry"; - version = "0.7.2"; + version = "0.8.2"; src = fetchFromGitHub { owner = "jonaski"; repo = pname; rev = version; - sha256 = "sha256-YUR9SDiRV/gJKx4H1cgdDnKGulTQPVP7MpHyihUEgqg="; + sha256 = "sha256-tJcpjviCXA1Y/PX1jlXphXZZMWBAAg3kdbsj41tmunE="; }; buildInputs = [ diff --git a/pkgs/applications/audio/wolf-shaper/default.nix b/pkgs/applications/audio/wolf-shaper/default.nix index 7d42a3c4e7b..ca16d60bea8 100644 --- a/pkgs/applications/audio/wolf-shaper/default.nix +++ b/pkgs/applications/audio/wolf-shaper/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "wolf-shaper"; - version = "0.1.7"; + version = "0.1.8"; src = fetchFromGitHub { owner = "pdesaulniers"; repo = "wolf-shaper"; rev = "v${version}"; - sha256 = "0lllgcbnnh1m95bp29hh17x170hl7170zizjrvy892qfkn36830d"; + sha256 = "1j9xmh1nkf45ay1c5dz2g165qvrwlanzcq6mvb3nfxar265drd9q"; fetchSubmodules = true; }; diff --git a/pkgs/applications/audio/xtuner/default.nix b/pkgs/applications/audio/xtuner/default.nix new file mode 100644 index 00000000000..57ce3ab1511 --- /dev/null +++ b/pkgs/applications/audio/xtuner/default.nix @@ -0,0 +1,39 @@ +{ stdenv +, fetchFromGitHub +, pkg-config +, cairo +, libX11 +, libjack2 +, liblo +, libsigcxx +, zita-resampler +, fftwFloat +}: + +stdenv.mkDerivation rec { + pname = "xtuner"; + version = "1.0"; + + src = fetchFromGitHub { + owner = "brummer10"; + repo = "XTuner"; + rev = "v${version}"; + sha256 = "1i5chfnf3hcivwzni9z6cn9pb68qmwsx8bf4z7d29a5vig8kbhrv"; + fetchSubmodules = true; + }; + + nativeBuildInputs = [ pkg-config ]; + buildInputs = [ cairo libX11 libjack2 liblo libsigcxx zita-resampler fftwFloat ]; + + makeFlags = [ "PREFIX=$(out)" ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + homepage = "https://github.com/brummer10/XTuner"; + description = "Tuner for Jack Audio Connection Kit"; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ magnetophon ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/audio/zam-plugins/default.nix b/pkgs/applications/audio/zam-plugins/default.nix index a34773513d9..edcc70f9912 100644 --- a/pkgs/applications/audio/zam-plugins/default.nix +++ b/pkgs/applications/audio/zam-plugins/default.nix @@ -1,14 +1,15 @@ -{ stdenv, fetchgit , boost, libX11, libGL, liblo, libjack2, ladspaH, lv2, pkgconfig, rubberband, libsndfile, fftwFloat, libsamplerate }: +{ stdenv, fetchFromGitHub, boost, libX11, libGL, liblo, libjack2, ladspaH, lv2, pkgconfig, rubberband, libsndfile, fftwFloat, libsamplerate }: -stdenv.mkDerivation { +stdenv.mkDerivation rec { pname = "zam-plugins"; - version = "3.12"; + version = "3.13"; - src = fetchgit { - url = "https://github.com/zamaudio/zam-plugins.git"; - deepClone = true; - rev = "87fdee6e87dbee75c1088e2327ea59c1ab1522e4"; - sha256 = "0kz0xygff3ca1v9nqi0dvrzy9whbzqxrls5b7hydi808d795893n"; + src = fetchFromGitHub { + owner = "zamaudio"; + repo = pname; + rev = version; + sha256 = "02blg0iqich4vx5z1ahj6avkh83yqszdiq83p9jd5qwm0i4llqjq"; + fetchSubmodules = true; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/applications/blockchains/bitcoin-unlimited.nix b/pkgs/applications/blockchains/bitcoin-unlimited.nix index fe39b955a28..f8988af683d 100644 --- a/pkgs/applications/blockchains/bitcoin-unlimited.nix +++ b/pkgs/applications/blockchains/bitcoin-unlimited.nix @@ -7,13 +7,13 @@ with stdenv.lib; stdenv.mkDerivation rec { name = "bitcoin" + (toString (optional (!withGui) "d")) + "-unlimited-" + version; - version = "1.8.0.0"; + version = "1.9.0.1"; src = fetchFromGitHub { owner = "bitcoinunlimited"; repo = "bitcoinunlimited"; rev = "BCHunlimited${version}"; - sha256 = "01qi15li5x9fvhsmvx7ai5fz6yzqqd3r9yv7081h75jn0nxai49q"; + sha256 = "018a22zbvjqky0whizmgxzscmna0sh2xqgyw02yjk8qj4yi0zp8c"; }; nativeBuildInputs = [ pkgconfig autoreconfHook python3 ] diff --git a/pkgs/applications/blockchains/ergo/default.nix b/pkgs/applications/blockchains/ergo/default.nix index a61df3e91bd..706acebba55 100644 --- a/pkgs/applications/blockchains/ergo/default.nix +++ b/pkgs/applications/blockchains/ergo/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "ergo"; - version = "3.3.3"; + version = "3.3.5"; src = fetchurl { url = "https://github.com/ergoplatform/ergo/releases/download/v${version}/ergo-${version}.jar"; - sha256 = "1lsqshpbc5p5qm8kic8a90xmvd2zx2s7jf613j9ng4h3hh75wbff"; + sha256 = "0bxzpwwb42bppqli3zggx3lah7g6kwmy6k6k6dinypj6x0bafqcg"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/applications/blockchains/exodus/default.nix b/pkgs/applications/blockchains/exodus/default.nix index af49bb9121f..0c0b6a24301 100644 --- a/pkgs/applications/blockchains/exodus/default.nix +++ b/pkgs/applications/blockchains/exodus/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchurl, unzip, glib, systemd, nss, nspr, gtk3-x11, gnome2, +{ stdenv, lib, fetchurl, unzip, glib, systemd, nss, nspr, gtk3-x11, pango, atk, cairo, gdk-pixbuf, xorg, xorg_sys_opengl, utillinux, alsaLib, dbus, at-spi2-atk, cups, vivaldi-ffmpeg-codecs, libpulseaudio, at-spi2-core }: @@ -36,7 +36,7 @@ stdenv.mkDerivation rec { nss nspr gtk3-x11 - gnome2.pango + pango atk cairo gdk-pixbuf diff --git a/pkgs/applications/blockchains/go-ethereum.nix b/pkgs/applications/blockchains/go-ethereum.nix index 20778fc986b..8e932195067 100644 --- a/pkgs/applications/blockchains/go-ethereum.nix +++ b/pkgs/applications/blockchains/go-ethereum.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "go-ethereum"; - version = "1.9.22"; + version = "1.9.23"; src = fetchFromGitHub { owner = "ethereum"; repo = pname; rev = "v${version}"; - sha256 = "08i31xil2lygfcn2igsvn4hpg8xnf8l6g914f78hgl4wj6v1dja9"; + sha256 = "0w65sln5l3sxwzxwjvyaial0m1kxhivhw8xwl5faxxxlk50rs4wm"; }; runVend = true; diff --git a/pkgs/applications/blockchains/ledger-live-desktop/default.nix b/pkgs/applications/blockchains/ledger-live-desktop/default.nix index 323b9936af5..3bd379ce27c 100644 --- a/pkgs/applications/blockchains/ledger-live-desktop/default.nix +++ b/pkgs/applications/blockchains/ledger-live-desktop/default.nix @@ -2,12 +2,12 @@ let pname = "ledger-live-desktop"; - version = "2.9.0"; + version = "2.14.0"; name = "${pname}-${version}"; src = fetchurl { url = "https://github.com/LedgerHQ/${pname}/releases/download/v${version}/${pname}-${version}-linux-x86_64.AppImage"; - sha256 = "1ajpmsq4h37w3jzcxijg3myp3mvgbrjis6jrz1cl79m78ripb6cy"; + sha256 = "057g77nd8qxi8dw9sp7x068wsxmrpnsdfrca876f0bpw7lpb0bqq"; }; appimageContents = appimageTools.extractType2 { @@ -30,7 +30,8 @@ in appimageTools.wrapType2 rec { description = "Wallet app for Ledger Nano S and Ledger Blue"; homepage = "https://www.ledger.com/live"; license = licenses.mit; - maintainers = with maintainers; [ thedavidmeister nyanloutre ]; + maintainers = with maintainers; [ thedavidmeister nyanloutre RaghavSood ]; platforms = [ "x86_64-linux" ]; }; } + diff --git a/pkgs/applications/blockchains/monero-gui/default.nix b/pkgs/applications/blockchains/monero-gui/default.nix index 776d51ca6bd..8cd03f34286 100644 --- a/pkgs/applications/blockchains/monero-gui/default.nix +++ b/pkgs/applications/blockchains/monero-gui/default.nix @@ -27,13 +27,13 @@ in stdenv.mkDerivation rec { pname = "monero-gui"; - version = "0.17.0.1"; + version = "0.17.1.1"; src = fetchFromGitHub { owner = "monero-project"; repo = "monero-gui"; rev = "v${version}"; - sha256 = "1i9a3ampppyzsl4sllbqlr3w43sjpb3fdfxhb1j4n49p8g0jzmf3"; + sha256 = "0aqhp4rmqsgwjb875kgh6qwz0wyyiag1fksyic9cnhgg5j5y95nx"; }; nativeBuildInputs = [ @@ -65,9 +65,6 @@ stdenv.mkDerivation rec { substituteInPlace src/version.js.in \ --replace '@VERSION_TAG_GUI@' '${version}' - # remove this line on the next release - rm cmake/Version.cmake - # use monerod from the monero package substituteInPlace src/daemon/DaemonManager.cpp \ --replace 'QApplication::applicationDirPath() + "' '"${monero}/bin' @@ -78,10 +75,7 @@ stdenv.mkDerivation rec { 'add_subdirectory(monero EXCLUDE_FROM_ALL)' ''; - cmakeFlags = [ - "-DCMAKE_INSTALL_PREFIX=$out/bin" - "-DARCH=${arch}" - ]; + cmakeFlags = [ "-DARCH=${arch}" ]; desktopItem = makeDesktopItem { name = "monero-wallet-gui"; diff --git a/pkgs/applications/blockchains/monero/default.nix b/pkgs/applications/blockchains/monero/default.nix index 935040bc7bb..29acbd0f37b 100644 --- a/pkgs/applications/blockchains/monero/default.nix +++ b/pkgs/applications/blockchains/monero/default.nix @@ -17,25 +17,18 @@ assert trezorSupport -> all (x: x!=null) [ libusb1 protobuf python3 ]; stdenv.mkDerivation rec { pname = "monero"; - version = "0.17.0.1"; + version = "0.17.1.1"; src = fetchFromGitHub { owner = "monero-project"; repo = "monero"; rev = "v${version}"; - sha256 = "1v0phvg5ralli4dr09a60nq032xqlci5d6v4zfq8304vgrn1ffgp"; + sha256 = "18x27dm24k04vx0yz57zi02rk0wrmbn4wr8alqf48dq6z9wr0fhp"; fetchSubmodules = true; }; patches = [ ./use-system-libraries.patch - - # This fixes a bug in the monero-gui build system, - # remove it once the PR has been merged - (fetchpatch { - url = "https://github.com/monero-project/monero/pull/6867.patch"; - sha256 = "0nxa6861df1fadrm9bmhqf2g6mljgr4jndsbxqp7g501hv9z51j3"; - }) ]; postPatch = '' diff --git a/pkgs/applications/blockchains/polkadot/default.nix b/pkgs/applications/blockchains/polkadot/default.nix index a919a305419..45cecf7e9fb 100644 --- a/pkgs/applications/blockchains/polkadot/default.nix +++ b/pkgs/applications/blockchains/polkadot/default.nix @@ -1,37 +1,43 @@ -{ stdenv +{ clang , fetchFromGitHub +, lib +, llvmPackages +, protobuf , rustPlatform -, pkgconfig -, openssl }: - rustPlatform.buildRustPackage rec { pname = "polkadot"; - version = "0.2.17"; + version = "0.8.25"; src = fetchFromGitHub { owner = "paritytech"; - # N.B. In 2018, the thing that was "polkadot" was split off into its own - # repo, so if this package is ever updated it should be changed to - # paritytech/polkadot, as per comment here: - # https://github.com/paritytech/polkadot#note - repo = "substrate"; - rev = "19f4f4d4df3bb266086b4e488739f73d3d5e588c"; - sha256 = "0v7g03rbml2afw0splmyjh9nqpjg0ldjw09hyc0jqd3qlhgxiiyj"; + repo = "polkadot"; + rev = "v${version}"; + sha256 = "1jdklmysr25rlwgx7pz0jw66j1w60h98kqghzjhr90zhynzh39lz"; }; - cargoSha256 = "1h5v7c7xi2r2wzh1pj6xidrg7dx23w3rjm88mggpq7574arijk4i"; + cargoSha256 = "08yfafrspkd1g1mhlfwngbknkxjkyymbcga8n2rdsk7mz0hm0vgy"; - buildInputs = [ pkgconfig openssl openssl.dev ]; + cargoPatches = [ ./substrate-wasm-builder-runner.patch ]; - meta = with stdenv.lib; { + nativeBuildInputs = [ clang ]; + + LIBCLANG_PATH = "${llvmPackages.libclang}/lib"; + PROTOC = "${protobuf}/bin/protoc"; + + # NOTE: We don't build the WASM runtimes since this would require a more + # complicated rust environment setup. The resulting binary is still useful for + # live networks since those just use the WASM blob from the network chainspec. + BUILD_DUMMY_WASM_BINARY = 1; + + # We can't run the test suite since we didn't compile the WASM runtimes. + doCheck = false; + + meta = with lib; { description = "Polkadot Node Implementation"; homepage = "https://polkadot.network"; license = licenses.gpl3; - maintainers = [ maintainers.akru ]; + maintainers = with maintainers; [ akru andresilva RaghavSood ]; platforms = platforms.linux; - # Last attempt at building this was on v0.7.22 - # https://github.com/paritytech/polkadot/releases - broken = true; }; } diff --git a/pkgs/applications/blockchains/polkadot/substrate-wasm-builder-runner.patch b/pkgs/applications/blockchains/polkadot/substrate-wasm-builder-runner.patch new file mode 100644 index 00000000000..7d84965dcea --- /dev/null +++ b/pkgs/applications/blockchains/polkadot/substrate-wasm-builder-runner.patch @@ -0,0 +1,25 @@ +diff --git a/Cargo.lock b/Cargo.lock +index 5e7c4a14..bb67aada 100644 +--- a/Cargo.lock ++++ b/Cargo.lock +@@ -8642,8 +8642,7 @@ dependencies = [ + [[package]] + name = "substrate-wasm-builder-runner" + version = "1.0.6" +-source = "registry+https://github.com/rust-lang/crates.io-index" +-checksum = "d2a965994514ab35d3893e9260245f2947fd1981cdd4fffd2c6e6d1a9ce02e6a" ++source = "git+https://github.com/paritytech/substrate#647ad15565d7c35ecf00b73b12cccad9858780b9" + + [[package]] + name = "subtle" +diff --git a/Cargo.toml b/Cargo.toml +index 78047a1a..2d571f8e 100644 +--- a/Cargo.toml ++++ b/Cargo.toml +@@ -112,3 +112,6 @@ polkadot = { path = "/usr/bin/polkadot" } + + [package.metadata.rpm.files] + "../scripts/packaging/polkadot.service" = { path = "/usr/lib/systemd/system/polkadot.service", mode = "644" } ++ ++[patch.crates-io] ++substrate-wasm-builder-runner = { git = "https://github.com/paritytech/substrate", branch = "master" } diff --git a/pkgs/applications/blockchains/sumokoin.nix b/pkgs/applications/blockchains/sumokoin.nix index ad65da057ae..beb294d2dfe 100644 --- a/pkgs/applications/blockchains/sumokoin.nix +++ b/pkgs/applications/blockchains/sumokoin.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; meta = with lib; { - description = "Sumokoin is a fork of Monero and a truely fungible cryptocurrency"; + description = "A fork of Monero and a truely fungible cryptocurrency"; homepage = "https://www.sumokoin.org/"; license = licenses.bsd3; maintainers = with maintainers; [ fpletz ]; diff --git a/pkgs/applications/editors/android-studio/default.nix b/pkgs/applications/editors/android-studio/default.nix index e8d8eb90026..3a5bc63e1c3 100644 --- a/pkgs/applications/editors/android-studio/default.nix +++ b/pkgs/applications/editors/android-studio/default.nix @@ -19,9 +19,9 @@ let sha256Hash = "sha256-qbxmR9g8DSKzcP09bJuc+am79BSXWG39UQxFEb1bZ88="; }; latestVersion = { # canary & dev - version = "4.2.0.13"; # "Android Studio 4.2 Canary 13" - build = "202.6863838"; - sha256Hash = "sha256-avkRelP5/sDXW7pdVrOknmb3PtR6XQEmQXivZFljpLc="; + version = "4.2.0.15"; # "Android Studio 4.2 Canary 15" + build = "202.6922807"; + sha256Hash = "sha256-PXFNnPSJbdp9NtkMDR3Vq+vpWqd85Io2FmXPhRLRk/8="; }; in { # Attributes are named by their corresponding release channels diff --git a/pkgs/applications/editors/code-browser/default.nix b/pkgs/applications/editors/code-browser/default.nix index 11476cae702..ed11298c621 100644 --- a/pkgs/applications/editors/code-browser/default.nix +++ b/pkgs/applications/editors/code-browser/default.nix @@ -40,7 +40,7 @@ stdenv.mkDerivation rec { ++ stdenv.lib.optionals withQt [ "UI=qt" ] ++ stdenv.lib.optionals withGtk [ "UI=gtk" ]; meta = with stdenv.lib; { - description = "Folding text editor, designed to hierarchically structure any kind of text file and especially source code."; + description = "Folding text editor, designed to hierarchically structure any kind of text file and especially source code"; homepage = "https://tibleiz.net/code-browser/"; license = licenses.gpl2; platforms = platforms.x86_64; diff --git a/pkgs/applications/editors/cudatext/default.nix b/pkgs/applications/editors/cudatext/default.nix index a1af859af81..af3f087dae2 100644 --- a/pkgs/applications/editors/cudatext/default.nix +++ b/pkgs/applications/editors/cudatext/default.nix @@ -30,22 +30,21 @@ let deps = lib.mapAttrs (name: spec: fetchFromGitHub { - owner = "Alexey-T"; repo = name; - inherit (spec) rev sha256; + inherit (spec) owner rev sha256; } ) (builtins.fromJSON (builtins.readFile ./deps.json)); in stdenv.mkDerivation rec { pname = "cudatext"; - version = "1.111.0"; + version = "1.115.0"; src = fetchFromGitHub { owner = "Alexey-T"; repo = "CudaText"; rev = version; - sha256 = "1ai0g8fmw4m237dqh5dkr8w9qqricyvp49ijz2ivvmg9dsdfzjfp"; + sha256 = "0q7gfpzc97fvyvabjdb9a4d3c2qhm4zf5bqgnsj73vkly80kgww8"; }; patches = [ @@ -74,6 +73,7 @@ stdenv.mkDerivation rec { cp -r --no-preserve=mode ${dep} ${name} '') deps) + '' lazbuild --lazarusdir=${lazarus}/share/lazarus --pcp=./lazarus --ws=${widgetset} \ + bgrabitmap/bgrabitmap/bgrabitmappack.lpk \ EncConv/encconv/encconv_package.lpk \ ATBinHex-Lazarus/atbinhex/atbinhex_package.lpk \ ATFlatControls/atflatcontrols/atflatcontrols_package.lpk \ diff --git a/pkgs/applications/editors/cudatext/deps.json b/pkgs/applications/editors/cudatext/deps.json index 9c3270bb28a..02418d25842 100644 --- a/pkgs/applications/editors/cudatext/deps.json +++ b/pkgs/applications/editors/cudatext/deps.json @@ -1,42 +1,57 @@ { "EncConv": { + "owner": "Alexey-T", "rev": "2020.06.15", "sha256": "07dpvq3ppfq3b70i1smkf7vwdlzq8qnxs3fk94hi9h1z36bz2rw3" }, "ATBinHex-Lazarus": { + "owner": "Alexey-T", "rev": "2020.09.05", "sha256": "022yx5vic4hnc9lz53wvr4h7hf0h71801dzlilj55x5mf8p59072" }, "ATFlatControls": { - "rev": "2020.08.23", - "sha256": "1axzwiz5h62v11ncynxcg431dfbky9pwyha7cd6kpizjdjagfklw" + "owner": "Alexey-T", + "rev": "2020.09.20", + "sha256": "09svn8yyqp6znvfpcxrsybkclh828h5rvah7nhbhk7nrfzj8i63x" }, "ATSynEdit": { - "rev": "2020.09.05", - "sha256": "0qn0fp7rbi48f3nrysb0knkd7a3a6pl5w72yf95g5iibal4zrib2" + "owner": "Alexey-T", + "rev": "2020.10.12", + "sha256": "07vznwwfa3c1jr1cd32yppw0mmmm1ja9bmsxhxlcbnc2nb30n9zr" }, "ATSynEdit_Cmp": { - "rev": "2020.09.05", - "sha256": "1bd25zc97001b7lg0bvi8va9mazkr6jih6d2ddkabcxcnsj0dxnq" + "owner": "Alexey-T", + "rev": "2020.10.11", + "sha256": "11vx685i85izp7wzb34dalcwlkmkbz1vzva5j9cf2yz1jff1v4qw" }, "EControl": { - "rev": "2020.09.05", - "sha256": "1n7s1zkhrr216gqdqvq6wq0n3jq7s78mwpi5s5j8054p0fak1ywi" + "owner": "Alexey-T", + "rev": "2020.10.04", + "sha256": "0ypbaca3y5biw2207yh3x5p28gm8g51qf7glm5622w3cgbrf9mdq" }, "ATSynEdit_Ex": { - "rev": "2020.09.05", - "sha256": "17y2cx5syj3jvrszjgdyf1p6vilp2qgaggz4y8yqnz99cvd0shs7" + "owner": "Alexey-T", + "rev": "2020.10.04", + "sha256": "0z66cm9pgdi7whqaim6hva4aa08zrr1881n1fal7lnz6wlla824k" }, "Python-for-Lazarus": { + "owner": "Alexey-T", "rev": "2020.07.31", "sha256": "0qbs51h6gw8qd3h06kwy1j7db35shbg7r2rayrhvvw0vzr9n330j" }, "Emmet-Pascal": { + "owner": "Alexey-T", "rev": "2020.09.05", "sha256": "0qfiirxnk5g3whx8y8hp54ch3h6gkkd01yf79m95bwar5qvdfybg" }, "CudaText-lexers": { + "owner": "Alexey-T", "rev": "2020.08.10", "sha256": "1gzs2psyfhb9si1qyacxzfjb3dz2v255hv7y4jlkbxdxv0kckqr6" + }, + "bgrabitmap": { + "owner": "bgrabitmap", + "rev": "v11.2.4", + "sha256": "1zk88crfn07md16wg6af4i8nlx4ikkhxq9gfk49jirwimgwbf1md" } } diff --git a/pkgs/applications/editors/cudatext/dont-check-update.patch b/pkgs/applications/editors/cudatext/dont-check-update.patch index 44912160b26..5c896bc046c 100644 --- a/pkgs/applications/editors/cudatext/dont-check-update.patch +++ b/pkgs/applications/editors/cudatext/dont-check-update.patch @@ -1,8 +1,8 @@ diff --git i/app/formmain.pas w/app/formmain.pas -index 8c1131680..6c6c0043f 100644 +index f6f37febb..cf993d75e 100644 --- i/app/formmain.pas +++ w/app/formmain.pas -@@ -2135,6 +2135,7 @@ begin +@@ -2156,6 +2156,7 @@ begin false {$endif}; *) diff --git a/pkgs/applications/editors/geany/default.nix b/pkgs/applications/editors/geany/default.nix index d3cc3624419..d56e5acc71b 100644 --- a/pkgs/applications/editors/geany/default.nix +++ b/pkgs/applications/editors/geany/default.nix @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { pname = "geany"; - version = "1.36"; + version = "1.37"; outputs = [ "out" "dev" "doc" "man" ]; src = fetchurl { url = "https://download.geany.org/${pname}-${version}.tar.bz2"; - sha256 = "0gnm17cr4rf3pmkf0axz4a0fxwnvp55ji0q0lzy88yqbshyxv14i"; + sha256 = "dde52584823b769c56704c27dbedddb7a6bbaf4eacb9587d10bbc387816e3d51"; }; nativeBuildInputs = [ diff --git a/pkgs/applications/editors/glow/default.nix b/pkgs/applications/editors/glow/default.nix index 7af1287d8c1..1dc140f3e09 100644 --- a/pkgs/applications/editors/glow/default.nix +++ b/pkgs/applications/editors/glow/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "glow"; - version = "1.0.1"; + version = "1.1.0"; src = fetchFromGitHub { owner = "charmbracelet"; repo = "glow"; rev = "v${version}"; - sha256 = "05scgdivb0hf0lfznikn20b6pgb479jhs24hgf5f5i60v37v930y"; + sha256 = "016psbm93ni81k87i9gx3cjr59j1fmpq5x8vz0ydabczzdshd1py"; }; - vendorSha256 = "180g6d9w3lfmxj4843kqvq4ikg8lwmwprgfxdgz1lzvjmbfjj3g9"; + vendorSha256 = "0gvlbj8b5sqk93ahg4b2krwrmr8ljz7cah77fxaxcd98apap0pw6"; doCheck = false; diff --git a/pkgs/applications/editors/jetbrains/default.nix b/pkgs/applications/editors/jetbrains/default.nix index d54513971a8..9fbab346907 100644 --- a/pkgs/applications/editors/jetbrains/default.nix +++ b/pkgs/applications/editors/jetbrains/default.nix @@ -268,12 +268,12 @@ in clion = buildClion rec { name = "clion-${version}"; - version = "2020.2.3"; /* updated by script */ + version = "2020.2.4"; /* updated by script */ description = "C/C++ IDE. New. Intelligent. Cross-platform"; license = stdenv.lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/cpp/CLion-${version}.tar.gz"; - sha256 = "1kdlmdsfxmwks3rk2dzm5q30vwzpxcwzpyjsir122k36xnqvaqxq"; /* updated by script */ + sha256 = "0xkra8l3ga8qsmzbvfisn99lxm5wxa8c4d4jzljjwn8855bs20a3"; /* updated by script */ }; wmClass = "jetbrains-clion"; update-channel = "CLion RELEASE"; # channel's id as in http://www.jetbrains.com/updates/updates.xml @@ -307,12 +307,12 @@ in idea-community = buildIdea rec { name = "idea-community-${version}"; - version = "2020.2.2"; /* updated by script */ + version = "2020.2.3"; /* updated by script */ description = "Integrated Development Environment (IDE) by Jetbrains, community edition"; license = stdenv.lib.licenses.asl20; src = fetchurl { url = "https://download.jetbrains.com/idea/ideaIC-${version}.tar.gz"; - sha256 = "0kbn9q7fvhrzb1w6l8i2nv4cx8qrj74jp7fidj9yk8vkv9lfijg6"; /* updated by script */ + sha256 = "092swkz7l1p3asrna6fxj6j324sh7pdbgzrlapdwka8kq9y40ajz"; /* updated by script */ }; wmClass = "jetbrains-idea-ce"; update-channel = "IntelliJ IDEA RELEASE"; @@ -320,12 +320,12 @@ in idea-ultimate = buildIdea rec { name = "idea-ultimate-${version}"; - version = "2020.2.2"; /* updated by script */ + version = "2020.2.3"; /* updated by script */ description = "Integrated Development Environment (IDE) by Jetbrains, requires paid license"; license = stdenv.lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/idea/ideaIU-${version}-no-jbr.tar.gz"; - sha256 = "1196zrcbgrr9271kjrzd2mzvhvxd7hkr1d2a4ij4h8f97qmsd6r6"; /* updated by script */ + sha256 = "1416ikna169d2hx77yd0bb8hpxkpnf27jgyq5yrgla1w6h1fp1p0"; /* updated by script */ }; wmClass = "jetbrains-idea"; update-channel = "IntelliJ IDEA RELEASE"; @@ -333,12 +333,12 @@ in mps = buildMps rec { name = "mps-${version}"; - version = "2020.2"; /* updated by script */ + version = "2020.2.2"; /* updated by script */ description = "Create your own domain-specific language"; license = stdenv.lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/mps/2020.2/MPS-${version}.tar.gz"; - sha256 = "06c0yv9vvz0y5njh1sghn7ijpn1d81mxsyk5xjpj29bvvg511pjs"; /* updated by script */ + sha256 = "1a09yahky8ii2dypj69m89c3yh7akn7sa74n0j0mff7r46ad421y"; /* updated by script */ }; wmClass = "jetbrains-mps"; update-channel = "MPS RELEASE"; @@ -346,12 +346,12 @@ in phpstorm = buildPhpStorm rec { name = "phpstorm-${version}"; - version = "2020.2.1"; /* updated by script */ + version = "2020.2.3"; /* updated by script */ description = "Professional IDE for Web and PHP developers"; license = stdenv.lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/webide/PhpStorm-${version}.tar.gz"; - sha256 = "14hz6w5lgn8ddscicm4s9xhi07j5adsq0bmyr8amzmj5q6jgw4p9"; /* updated by script */ + sha256 = "0bdxmxml6337cdpb2amhdqlvxicng50cgzlnmiw0wqnmwj5ihpih"; /* updated by script */ }; wmClass = "jetbrains-phpstorm"; update-channel = "PhpStorm RELEASE"; @@ -359,12 +359,12 @@ in pycharm-community = buildPycharm rec { name = "pycharm-community-${version}"; - version = "2020.2.2"; /* updated by script */ + version = "2020.2.3"; /* updated by script */ description = "PyCharm Community Edition"; license = stdenv.lib.licenses.asl20; src = fetchurl { url = "https://download.jetbrains.com/python/${name}.tar.gz"; - sha256 = "1a1vhlc2q5n3dxli0x6ppxx3mgary4gpakcxdp9nylmixjzjph6v"; /* updated by script */ + sha256 = "0wqhcag32fxqxg6aml2a3d0rpds0d48rgbcl7cp0ah8xj6x72047"; /* updated by script */ }; wmClass = "jetbrains-pycharm-ce"; update-channel = "PyCharm RELEASE"; @@ -372,12 +372,12 @@ in pycharm-professional = buildPycharm rec { name = "pycharm-professional-${version}"; - version = "2020.2.2"; /* updated by script */ + version = "2020.2.3"; /* updated by script */ description = "PyCharm Professional Edition"; license = stdenv.lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/python/${name}.tar.gz"; - sha256 = "0v64f5sbv1639d6fjg0shfgdy40f1xc2zbn0jqfrx6xmkg7wgsz9"; /* updated by script */ + sha256 = "0g7bki4bzi3a1w3rlwik2w0ma10xb4g450qxm4fr4fp8dy2xaysc"; /* updated by script */ }; wmClass = "jetbrains-pycharm"; update-channel = "PyCharm RELEASE"; @@ -385,12 +385,12 @@ in rider = buildRider rec { name = "rider-${version}"; - version = "2020.2.3"; /* updated by script */ + version = "2020.2.4"; /* updated by script */ description = "A cross-platform .NET IDE based on the IntelliJ platform and ReSharper"; license = stdenv.lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/rider/JetBrains.Rider-${version}.tar.gz"; - sha256 = "01namzd29chj975w3awanlzf38hh30cfjzyljqfkp6y3djn0if1r"; /* updated by script */ + sha256 = "1anl48ifv5ayqn876dqckxc1b5fw1271pvamzf1vvk501wv6dpaf"; /* updated by script */ }; wmClass = "jetbrains-rider"; update-channel = "Rider RELEASE"; @@ -398,12 +398,12 @@ in ruby-mine = buildRubyMine rec { name = "ruby-mine-${version}"; - version = "2020.2.2"; /* updated by script */ + version = "2020.2.3"; /* updated by script */ description = "The Most Intelligent Ruby and Rails IDE"; license = stdenv.lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/ruby/RubyMine-${version}.tar.gz"; - sha256 = "11v26hpf891nq5vj8i0ad4shhzpy8b7rvyrkr3l29dwfnd83lgpz"; /* updated by script */ + sha256 = "03f1z7xhz90j9l8xp3il115yvb15kda0i6ba5ndhby7nf52vnphk"; /* updated by script */ }; wmClass = "jetbrains-rubymine"; update-channel = "RubyMine RELEASE"; @@ -411,12 +411,12 @@ in webstorm = buildWebStorm rec { name = "webstorm-${version}"; - version = "2020.2.2"; /* updated by script */ + version = "2020.2.3"; /* updated by script */ description = "Professional IDE for Web and JavaScript development"; license = stdenv.lib.licenses.unfree; src = fetchurl { url = "https://download.jetbrains.com/webstorm/WebStorm-${version}.tar.gz"; - sha256 = "1w17cf0qj0vyizkzj1frcmi52q5qxbf31msg8df38wy2l8r0b928"; /* updated by script */ + sha256 = "1c60k38ai63s4779fs55vaiswfc6bi7ki6p96hrmmkrnpzgsipg5"; /* updated by script */ }; wmClass = "jetbrains-webstorm"; update-channel = "WebStorm RELEASE"; diff --git a/pkgs/applications/editors/kibi/default.nix b/pkgs/applications/editors/kibi/default.nix index 85ad49a01d6..7945dedc52e 100644 --- a/pkgs/applications/editors/kibi/default.nix +++ b/pkgs/applications/editors/kibi/default.nix @@ -5,15 +5,15 @@ rustPlatform.buildRustPackage rec { pname = "kibi"; - version = "0.2.0"; + version = "0.2.1"; - cargoSha256 = "0zyqzb3k4ak7h58zjbg9b32hz1vgbbn9i9l85j4vd4aw8mhsz0n9"; + cargoSha256 = "1cbiidq0w5f9ynb09b6828p7p7y5xhpgz47n2jsl8mp96ydhy5lv"; src = fetchFromGitHub { owner = "ilai-deutel"; repo = "kibi"; rev = "v${version}"; - sha256 = "1cqnzw6gpsmrqcz82zn1x5i6najcr3i7shj0wnqzpwppff9a6yac"; + sha256 = "1x5bvvq33380k2qhs1bwz3f9zl5q1sl7iic47pxfkzv24bpjnypb"; }; meta = with stdenv.lib; { diff --git a/pkgs/applications/editors/kile/default.nix b/pkgs/applications/editors/kile/default.nix index fa25252fc6f..1f1e43d196c 100644 --- a/pkgs/applications/editors/kile/default.nix +++ b/pkgs/applications/editors/kile/default.nix @@ -52,7 +52,7 @@ mkDerivation rec { propagatedUserEnvPkgs = [ konsole ]; meta = { - description = "Kile is a user friendly TeX/LaTeX authoring tool for the KDE desktop environment"; + description = "User-friendly TeX/LaTeX authoring tool for the KDE desktop environment"; homepage = "https://www.kde.org/applications/office/kile/"; maintainers = with lib.maintainers; [ fridh ]; license = lib.licenses.gpl2Plus; diff --git a/pkgs/applications/editors/marker/default.nix b/pkgs/applications/editors/marker/default.nix new file mode 100644 index 00000000000..758cb0c30eb --- /dev/null +++ b/pkgs/applications/editors/marker/default.nix @@ -0,0 +1,49 @@ +{ stdenv +, fetchFromGitHub +, meson +, ninja +, pkg-config +, wrapGAppsHook +, gtk3 +, gtksourceview +, gtkspell3 +, webkitgtk +, pandoc +}: + +stdenv.mkDerivation rec { + pname = "marker"; + version = "2020.04.04"; + + src = fetchFromGitHub { + owner = "fabiocolacio"; + repo = "Marker"; + rev = "${version}"; + fetchSubmodules = true; + sha256 = "1iy7izyprf050bix8am1krqivgyxnhx3jm775v8f80cgbqxy7m5r"; + }; + + nativeBuildInputs = [ + meson + ninja + pkg-config + wrapGAppsHook + ]; + + buildInputs = [ + gtk3 + gtksourceview + gtkspell3 + webkitgtk + pandoc + ]; + + meta = with stdenv.lib; { + homepage = "https://fabiocolacio.github.io/Marker/"; + description = "Markdown editor for the Linux desktop"; + maintainers = with maintainers; [ trepetti ]; + license = licenses.gpl3Plus; + platforms = platforms.linux; + changelog = "https://github.com/fabiocolacio/Marker/releases/tag/${version}"; + }; +} diff --git a/pkgs/applications/editors/micro/default.nix b/pkgs/applications/editors/micro/default.nix index ffef5d5fdde..f3506b0cb98 100644 --- a/pkgs/applications/editors/micro/default.nix +++ b/pkgs/applications/editors/micro/default.nix @@ -1,40 +1,33 @@ -{ stdenv, buildGoPackage, fetchFromGitHub, installShellFiles }: +{ lib, buildGoModule, fetchFromGitHub, installShellFiles }: -buildGoPackage rec { +buildGoModule rec { pname = "micro"; - version = "2.0.7"; - - goPackagePath = "github.com/zyedidia/micro"; + version = "2.0.8"; src = fetchFromGitHub { owner = "zyedidia"; repo = pname; rev = "v${version}"; - sha256 = "07ck1a9arklic3p0z50wcg608cvpba1kljvlfb4fljr6jhv5cmkb"; - fetchSubmodules = true; + sha256 = "1b51fvc9hrjfl8acr3yybp66xfll7d43412qwi76wxwarn06gkci"; }; nativeBuildInputs = [ installShellFiles ]; subPackages = [ "cmd/micro" ]; - buildFlagsArray = let t = "${goPackagePath}/internal/util"; in '' - -ldflags= - -X ${t}.Version=${version} - -X ${t}.CommitHash=${src.rev} - ''; + vendorSha256 = "19iqvl63g9y6gkzfmv87rrgj4c4y6ngh467ss94rzrhaybj2b2d8"; - goDeps = ./deps.nix; + buildFlagsArray = [ "-ldflags=-s -w -X github.com/zyedidia/micro/v2/internal/util.Version=${version} -X github.com/zyedidia/micro/v2/internal/util.CommitHash=${src.rev}" ]; postInstall = '' - installManPage $src/assets/packaging/micro.1 + installManPage assets/packaging/micro.1 + install -Dt $out/share/applications assets/packaging/micro.desktop ''; - meta = with stdenv.lib; { + meta = with lib; { homepage = "https://micro-editor.github.io"; description = "Modern and intuitive terminal-based text editor"; license = licenses.mit; maintainers = with maintainers; [ dtzWill ]; }; } - diff --git a/pkgs/applications/editors/micro/deps.nix b/pkgs/applications/editors/micro/deps.nix deleted file mode 100644 index d1cb91c2959..00000000000 --- a/pkgs/applications/editors/micro/deps.nix +++ /dev/null @@ -1,345 +0,0 @@ -# file generated from go.mod using vgo2nix (https://github.com/adisbladis/vgo2nix) -[ - { - goPackagePath = "github.com/blang/semver"; - fetch = { - type = "git"; - url = "https://github.com/blang/semver"; - rev = "v3.5.1"; - sha256 = "13ws259bwcibkclbr82ilhk6zadm63kxklxhk12wayklj8ghhsmy"; - }; - } - { - goPackagePath = "github.com/chzyer/logex"; - fetch = { - type = "git"; - url = "https://github.com/chzyer/logex"; - rev = "v1.1.10"; - sha256 = "08pbjj3wx9acavlwyr055isa8a5hnmllgdv5k6ra60l5y1brmlq4"; - }; - } - { - goPackagePath = "github.com/chzyer/readline"; - fetch = { - type = "git"; - url = "https://github.com/chzyer/readline"; - rev = "2972be24d48e"; - sha256 = "104q8dazj8yf6b089jjr82fy9h1g80zyyzvp3g8b44a7d8ngjj6r"; - }; - } - { - goPackagePath = "github.com/chzyer/test"; - fetch = { - type = "git"; - url = "https://github.com/chzyer/test"; - rev = "a1ea475d72b1"; - sha256 = "0rns2aqk22i9xsgyap0pq8wi4cfaxsri4d9q6xxhhyma8jjsnj2k"; - }; - } - { - goPackagePath = "github.com/davecgh/go-spew"; - fetch = { - type = "git"; - url = "https://github.com/davecgh/go-spew"; - rev = "v1.1.1"; - sha256 = "0hka6hmyvp701adzag2g26cxdj47g21x6jz4sc6jjz1mn59d474y"; - }; - } - { - goPackagePath = "github.com/dustin/go-humanize"; - fetch = { - type = "git"; - url = "https://github.com/dustin/go-humanize"; - rev = "v1.0.0"; - sha256 = "1kqf1kavdyvjk7f8kx62pnm7fbypn9z1vbf8v2qdh3y7z7a0cbl3"; - }; - } - { - goPackagePath = "github.com/gdamore/encoding"; - fetch = { - type = "git"; - url = "https://github.com/gdamore/encoding"; - rev = "v1.0.0"; - sha256 = "1vmm5zll92i2fm4ajqx0gyx0p9j36496x5nabi3y0x7h0inv0pk9"; - }; - } - { - goPackagePath = "github.com/go-errors/errors"; - fetch = { - type = "git"; - url = "https://github.com/go-errors/errors"; - rev = "v1.0.1"; - sha256 = "0rznpknk19rxkr7li6dqs52c26pjazp69lh493l4ny4sxn5922lp"; - }; - } - { - goPackagePath = "github.com/kballard/go-shellquote"; - fetch = { - type = "git"; - url = "https://github.com/kballard/go-shellquote"; - rev = "95032a82bc51"; - sha256 = "1rspvmnsikdq95jmx3dykxd4k1rmgl98ryjrysvl0cf18hl1vq80"; - }; - } - { - goPackagePath = "github.com/kr/pretty"; - fetch = { - type = "git"; - url = "https://github.com/kr/pretty"; - rev = "v0.1.0"; - sha256 = "18m4pwg2abd0j9cn5v3k2ksk9ig4vlwxmlw9rrglanziv9l967qp"; - }; - } - { - goPackagePath = "github.com/kr/pty"; - fetch = { - type = "git"; - url = "https://github.com/kr/pty"; - rev = "v1.1.1"; - sha256 = "0383f0mb9kqjvncqrfpidsf8y6ns5zlrc91c6a74xpyxjwvzl2y6"; - }; - } - { - goPackagePath = "github.com/kr/text"; - fetch = { - type = "git"; - url = "https://github.com/kr/text"; - rev = "v0.1.0"; - sha256 = "1gm5bsl01apvc84bw06hasawyqm4q84vx1pm32wr9jnd7a8vjgj1"; - }; - } - { - goPackagePath = "github.com/lucasb-eyer/go-colorful"; - fetch = { - type = "git"; - url = "https://github.com/lucasb-eyer/go-colorful"; - rev = "v1.0.3"; - sha256 = "12bgz6dxbb2ki1g3x7fg9ipsjgfkd58fp7cdpv63h4kvlj2n7j69"; - }; - } - { - goPackagePath = "github.com/mattn/go-isatty"; - fetch = { - type = "git"; - url = "https://github.com/mattn/go-isatty"; - rev = "v0.0.11"; - sha256 = "0h671sv7hfprja495kavazkalkx7xzaqksjh13brcnwq67ijrali"; - }; - } - { - goPackagePath = "github.com/mattn/go-runewidth"; - fetch = { - type = "git"; - url = "https://github.com/mattn/go-runewidth"; - rev = "v0.0.7"; - sha256 = "1snr8mk63vz2h44knq26dm81p83887v7kb09iywqmx0nqzngih66"; - }; - } - { - goPackagePath = "github.com/mitchellh/go-homedir"; - fetch = { - type = "git"; - url = "https://github.com/mitchellh/go-homedir"; - rev = "v1.1.0"; - sha256 = "0ydzkipf28hwj2bfxqmwlww47khyk6d152xax4bnyh60f4lq3nx1"; - }; - } - { - goPackagePath = "github.com/pmezard/go-difflib"; - fetch = { - type = "git"; - url = "https://github.com/pmezard/go-difflib"; - rev = "v1.0.0"; - sha256 = "0c1cn55m4rypmscgf0rrb88pn58j3ysvc2d0432dp3c6fqg6cnzw"; - }; - } - { - goPackagePath = "github.com/robertkrimen/otto"; - fetch = { - type = "git"; - url = "https://github.com/robertkrimen/otto"; - rev = "c382bd3c16ff"; - sha256 = "043y6l647snsz71mdy84s2d3kn22aj6rbqd6c1vd8absvamqhlxa"; - }; - } - { - goPackagePath = "github.com/sergi/go-diff"; - fetch = { - type = "git"; - url = "https://github.com/sergi/go-diff"; - rev = "v1.1.0"; - sha256 = "0ir8ali2vx0j7pipmlfd6k8c973akyy2nmbjrf008fm800zcp7z2"; - }; - } - { - goPackagePath = "github.com/stretchr/objx"; - fetch = { - type = "git"; - url = "https://github.com/stretchr/objx"; - rev = "v0.1.0"; - sha256 = "19ynspzjdynbi85xw06mh8ad5j0qa1vryvxjgvbnyrr8rbm4vd8w"; - }; - } - { - goPackagePath = "github.com/stretchr/testify"; - fetch = { - type = "git"; - url = "https://github.com/stretchr/testify"; - rev = "v1.4.0"; - sha256 = "187i5g88sxfy4vxpm7dw1gwv29pa2qaq475lxrdh5livh69wqfjb"; - }; - } - { - goPackagePath = "github.com/xo/terminfo"; - fetch = { - type = "git"; - url = "https://github.com/xo/terminfo"; - rev = "454e5b68f9e8"; - sha256 = "0xvjb09nwbanp7ja4560pwb6b2xr9h0axyr7f5clgncca2k4f1pd"; - }; - } - { - goPackagePath = "github.com/yuin/gopher-lua"; - fetch = { - type = "git"; - url = "https://github.com/yuin/gopher-lua"; - rev = "ab39c6098bdb"; - sha256 = "13b0rrpv3988qw8rq6z7npajn1my059ybhafi5mxff9jw09k9sja"; - }; - } - { - goPackagePath = "github.com/zyedidia/clipboard"; - fetch = { - type = "git"; - url = "https://github.com/zyedidia/clipboard"; - rev = "v1.0.3"; - sha256 = "134vnx0r51f08b37yaymlxlfl14qv6r8yzgqz7dxxn1zw9197b3q"; - }; - } - { - goPackagePath = "github.com/zyedidia/glob"; - fetch = { - type = "git"; - url = "https://github.com/zyedidia/glob"; - rev = "dd4023a66dc3"; - sha256 = "1vqw4xbqq6j8p5m7mwxvb448w69vjvgzx0ndsfzdh2cxfirwp3y7"; - }; - } - { - goPackagePath = "github.com/zyedidia/highlight"; - fetch = { - type = "git"; - url = "https://github.com/zyedidia/highlight"; - rev = "201131ce5cf5"; - sha256 = "0blaynf32swmqddx2hcrifrfssj9c04kwnbdy42h3kzxihrwz4ps"; - }; - } - { - goPackagePath = "github.com/zyedidia/json5"; - fetch = { - type = "git"; - url = "https://github.com/zyedidia/json5"; - rev = "2da050b1a98d"; - sha256 = "1sgydazf3npr788b4w17ydmlh3fd1zmpriv9b69967ww90ckh2kz"; - }; - } - { - goPackagePath = "github.com/zyedidia/poller"; - fetch = { - type = "git"; - url = "https://github.com/zyedidia/poller"; - rev = "v1.0.1"; - sha256 = "10cjrqfk1j0l55bdbpm7kv4mqc665pngc8avai0p9chq03y2654g"; - }; - } - { - goPackagePath = "github.com/zyedidia/pty"; - fetch = { - type = "git"; - url = "https://github.com/zyedidia/pty"; - rev = "v2.0.0"; - sha256 = "1n946ld8y2v2wfbwsxv8rfaicxbw3w8pk11ryc8iybmw7hkmmf79"; - }; - } - { - goPackagePath = "github.com/zyedidia/tcell"; - fetch = { - type = "git"; - url = "https://github.com/zyedidia/tcell"; - rev = "v2.0.2"; - sha256 = "0fr7zm6zcir2bjll5ycdxy9m98gjr3ins7mzmqpd46b3njzbl75z"; - }; - } - { - goPackagePath = "github.com/zyedidia/terminal"; - fetch = { - type = "git"; - url = "https://github.com/zyedidia/terminal"; - rev = "533c623e2415"; - sha256 = "16l628f3zgl5yp9z5zkfy2hyl2sckw4d6mg3iqv2jjvh4i8yhrsm"; - }; - } - { - goPackagePath = "golang.org/x/sys"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/sys"; - rev = "33540a1f6037"; - sha256 = "0fjcv0vzvi6za0b4xmnk3932pr9f9gczzf03y0kgq3ry9rqg169y"; - }; - } - { - goPackagePath = "golang.org/x/text"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/text"; - rev = "v0.3.2"; - sha256 = "0flv9idw0jm5nm8lx25xqanbkqgfiym6619w575p7nrdh0riqwqh"; - }; - } - { - goPackagePath = "golang.org/x/tools"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/tools"; - rev = "90fa682c2a6e"; - sha256 = "03ic2xsy51jw9749wl7gszdbz99iijbd2bckgygl6cm9w5m364ak"; - }; - } - { - goPackagePath = "gopkg.in/check.v1"; - fetch = { - type = "git"; - url = "https://gopkg.in/check.v1"; - rev = "41f04d3bba15"; - sha256 = "0vfk9czmlxmp6wndq8k17rhnjxal764mxfhrccza7nwlia760pjy"; - }; - } - { - goPackagePath = "gopkg.in/sourcemap.v1"; - fetch = { - type = "git"; - url = "https://gopkg.in/sourcemap.v1"; - rev = "v1.0.5"; - sha256 = "08rf2dl13hbnm3fq2cm0nnsspy9fhf922ln23cz5463cv7h62as4"; - }; - } - { - goPackagePath = "gopkg.in/yaml.v2"; - fetch = { - type = "git"; - url = "https://gopkg.in/yaml.v2"; - rev = "v2.2.7"; - sha256 = "0k5xcwkd3wmcx54isk7ck9cwp8fapfhyqdz3f13kxp77cxqizazj"; - }; - } - { - goPackagePath = "layeh.com/gopher-luar"; - fetch = { - type = "git"; - url = "https://github.com/layeh/gopher-luar"; - rev = "v1.0.7"; - sha256 = "1rdbni3q7zajmiy62ccvbfgqjzppk5212wpwks2ba726hvyf85mj"; - }; - } -] diff --git a/pkgs/applications/editors/neovim/utils.nix b/pkgs/applications/editors/neovim/utils.nix new file mode 100644 index 00000000000..1c49f6e0fbe --- /dev/null +++ b/pkgs/applications/editors/neovim/utils.nix @@ -0,0 +1,163 @@ +{ lib +, vimUtils +, nodejs +, neovim-unwrapped +, bundlerEnv +, ruby +, pythonPackages +, python3Packages +, writeText +, wrapNeovimUnstable +}: +let + # returns everything needed for the caller to wrap its own neovim: + # - the generated content of the future init.vim + # - the arguments to wrap neovim with + # The caller is responsible for writing the init.vim and adding it to the wrapped + # arguments (["-u" writeText "init.vim" GENERATEDRC)]). + # This makes it possible to write the config anywhere: on a per-project basis + # .nvimrc or in $XDG_CONFIG_HOME/nvim/init.vim to avoid sideeffects. + # Indeed, note that wrapping with `-u init.vim` has sideeffects like .nvimrc wont be loaded + # anymore, $MYVIMRC wont be set etc + makeNeovimConfig = + { + withPython2 ? false + /* the function you would have passed to python.withPackages */ + , extraPython2Packages ? (_: [ ]) + , withPython3 ? true + /* the function you would have passed to python3.withPackages */ + , extraPython3Packages ? (_: [ ]) + , withNodeJs ? false + , withRuby ? true + + # same values as in vimUtils.vimrcContent + , configure ? { } + + # for forward compability, when adding new environments, haskell etc. + , ... + }: + let + rubyEnv = bundlerEnv { + name = "neovim-ruby-env"; + gemdir = ./ruby_provider; + postBuild = '' + ln -sf ${ruby}/bin/* $out/bin + ''; + }; + + + requiredPlugins = vimUtils.requiredPlugins configure; + getDeps = attrname: map (plugin: plugin.${attrname} or (_: [ ])); + + pluginPython2Packages = getDeps "pythonDependencies" requiredPlugins; + python2Env = pythonPackages.python.withPackages (ps: + [ ps.pynvim ] + ++ (extraPython2Packages ps) + ++ (lib.concatMap (f: f ps) pluginPython2Packages)); + + pluginPython3Packages = getDeps "python3Dependencies" requiredPlugins; + python3Env = python3Packages.python.withPackages (ps: + [ ps.pynvim ] + ++ (extraPython3Packages ps) + ++ (lib.concatMap (f: f ps) pluginPython3Packages)); + + + # Mapping a boolean argument to a key that tells us whether to add or not to + # add to nvim's 'embedded rc' this: + # let g:_host_prog=$out/bin/nvim- + # Or this: + # let g:loaded_${prog}_provider=1 + # While the latter tells nvim that this provider is not available + hostprog_check_table = { + node = withNodeJs; + python = withPython2; + python3 = withPython3; + ruby = withRuby; + }; + ## Here we calculate all of the arguments to the 1st call of `makeWrapper` + # We start with the executable itself NOTE we call this variable "initial" + # because if configure != {} we need to call makeWrapper twice, in order to + # avoid double wrapping, see comment near finalMakeWrapperArgs + makeWrapperArgs = + let + binPath = lib.makeBinPath (lib.optionals withRuby [ rubyEnv ] ++ lib.optionals withNodeJs [ nodejs ]); + + flags = lib.concatLists (lib.mapAttrsToList ( + prog: withProg: [ + "--cmd" (genProviderSettings prog withProg) + ] + ) + hostprog_check_table); + in + [ + "--argv0" "$0" "--add-flags" (lib.escapeShellArgs flags) + ] ++ lib.optionals withRuby [ + "--set" "GEM_HOME" "${rubyEnv}/${rubyEnv.ruby.gemPath}" + ] ++ lib.optionals (binPath != "") [ + "--suffix" "PATH" ":" binPath + ]; + + manifestRc = vimUtils.vimrcContent (configure // { customRC = ""; }); + neovimRcContent = vimUtils.vimrcContent configure; + in + { + wrapperArgs = makeWrapperArgs; + inherit neovimRcContent; + inherit manifestRc; + inherit rubyEnv; + inherit python2Env; + inherit python3Env; + }; + + genProviderSettings = prog: withProg: + if withProg then + "let g:${prog}_host_prog='${placeholder "out"}/bin/nvim-${prog}'" + else + "let g:loaded_${prog}_provider=1" + ; + + # to keep backwards compatibility + legacyWrapper = neovim: { + extraMakeWrapperArgs ? [] + , withPython ? true + /* the function you would have passed to python.withPackages */ + , extraPythonPackages ? (_: []) + /* the function you would have passed to python.withPackages */ + , withPython3 ? true, extraPython3Packages ? (_: []) + , withNodeJs ? false + , withRuby ? true + , vimAlias ? false + , viAlias ? false + , configure ? {} + }: + let + /* for compatibility with passing extraPythonPackages as a list; added 2018-07-11 */ + compatFun = funOrList: (if builtins.isList funOrList then + (_: lib.warn "passing a list as extraPythonPackages to the neovim wrapper is deprecated, pass a function as to python.withPackages instead" funOrList) + else funOrList); + + res = makeNeovimConfig { + withPython2 = withPython; + extraPythonPackages = compatFun extraPythonPackages; + inherit withPython3; + extraPython3Packages = compatFun extraPython3Packages; + inherit withNodeJs withRuby; + + inherit configure; + }; + in + wrapNeovimUnstable neovim (res // { + wrapperArgs = res.wrapperArgs + ++ [ + "--add-flags" "-u ${writeText "init.vim" res.neovimRcContent}" + ] + ++ (if builtins.isList extraMakeWrapperArgs then extraMakeWrapperArgs + else lib.warn "Passing a string as extraMakeWrapperArgs to the neovim wrapper is + deprecated, please use a list instead") + ; + }); +in +{ + inherit makeNeovimConfig; + inherit legacyWrapper; +} diff --git a/pkgs/applications/editors/neovim/wrapper.nix b/pkgs/applications/editors/neovim/wrapper.nix index e3c03c92e58..06ef920e276 100644 --- a/pkgs/applications/editors/neovim/wrapper.nix +++ b/pkgs/applications/editors/neovim/wrapper.nix @@ -1,5 +1,6 @@ { stdenv, symlinkJoin, lib, makeWrapper , vimUtils +, writeText , bundlerEnv, ruby , nodejs , nodePackages @@ -12,124 +13,41 @@ neovim: let wrapper = { - extraMakeWrapperArgs ? "" - , withPython ? true, extraPythonPackages ? (_: []) /* the function you would have passed to python.withPackages */ - , withPython3 ? true, extraPython3Packages ? (_: []) /* the function you would have passed to python.withPackages */ + # should contain all args but the binary + wrapperArgs ? [] + , manifestRc ? null + , withPython2 ? true, python2Env ? null + , withPython3 ? true, python3Env ? null , withNodeJs? false - , withRuby ? true + , withRuby ? true, rubyEnv ? null , vimAlias ? false , viAlias ? false - , configure ? {} + , ... }: let - rubyEnv = bundlerEnv { - name = "neovim-ruby-env"; - gemdir = ./ruby_provider; - postBuild = '' - ln -sf ${ruby}/bin/* $out/bin - ''; - }; - - /* for compatibility with passing extraPythonPackages as a list; added 2018-07-11 */ - compatFun = funOrList: (if builtins.isList funOrList then - (_: lib.warn "passing a list as extraPythonPackages to the neovim wrapper is deprecated, pass a function as to python.withPackages instead" funOrList) - else funOrList); - extraPythonPackagesFun = compatFun extraPythonPackages; - extraPython3PackagesFun = compatFun extraPython3Packages; - - requiredPlugins = vimUtils.requiredPlugins configure; - getDeps = attrname: map (plugin: plugin.${attrname} or (_:[])); - - pluginPythonPackages = getDeps "pythonDependencies" requiredPlugins; - pythonEnv = pythonPackages.python.withPackages(ps: - [ ps.pynvim ] - ++ (extraPythonPackagesFun ps) - ++ (concatMap (f: f ps) pluginPythonPackages)); - - pluginPython3Packages = getDeps "python3Dependencies" requiredPlugins; - python3Env = python3Packages.python.withPackages (ps: - [ ps.pynvim ] - ++ (extraPython3PackagesFun ps) - ++ (concatMap (f: f ps) pluginPython3Packages)); - - binPath = makeBinPath (optionals withRuby [rubyEnv] ++ optionals withNodeJs [nodejs]); - - # Mapping a boolean argument to a key that tells us whether to add or not to - # add to nvim's 'embedded rc' this: - # - # let g:_host_prog=$out/bin/nvim- - # - # Or this: - # - # let g:loaded_${prog}_provider=1 - # - # While the later tells nvim that this provider is not available - # - hostprog_check_table = { - node = withNodeJs; - python = withPython; - python3 = withPython3; - ruby = withRuby; - }; - ## Here we calculate all of the arguments to the 1st call of `makeWrapper` - # We start with the executable itself NOTE we call this variable "initial" - # because if configure != {} we need to call makeWrapper twice, in order to - # avoid double wrapping, see comment near finalMakeWrapperArgs - initialMakeWrapperArgs = - let - flags = lib.concatLists (lib.mapAttrsToList ( - prog: - withProg: - [ - "--cmd" - (if withProg then - "let g:${prog}_host_prog='${placeholder "out"}/bin/nvim-${prog}'" - else - "let g:loaded_${prog}_provider=1" - ) - ] - ) hostprog_check_table); - in [ - "${neovim}/bin/nvim" "${placeholder "out"}/bin/nvim" - "--argv0" "$0" - "--add-flags" (lib.escapeShellArgs flags) - ] ++ lib.optionals withRuby [ - "--set" "GEM_HOME" "${rubyEnv}/${rubyEnv.ruby.gemPath}" - ] ++ lib.optionals (binPath != "") [ - "--suffix" "PATH" ":" binPath - ]; # If configure != {}, we can't generate the rplugin.vim file with e.g # NVIM_SYSTEM_RPLUGIN_MANIFEST *and* NVIM_RPLUGIN_MANIFEST env vars set in # the wrapper. That's why only when configure != {} (tested both here and # when postBuild is evaluated), we call makeWrapper once to generate a # wrapper with most arguments we need, excluding those that cause problems to # generate rplugin.vim, but still required for the final wrapper. - finalMakeWrapperArgs = initialMakeWrapperArgs - # this relies on a patched neovim, see - # https://github.com/neovim/neovim/issues/9413 - ++ lib.optionals (configure != {}) [ - "--set" "NVIM_SYSTEM_RPLUGIN_MANIFEST" "${placeholder "out"}/rplugin.vim" - "--add-flags" "-u ${vimUtils.vimrcFile configure}" - ] - ; + finalMakeWrapperArgs = + [ "${neovim}/bin/nvim" "${placeholder "out"}/bin/nvim" ] ++ wrapperArgs ++ + [ "--set" "NVIM_SYSTEM_RPLUGIN_MANIFEST" "${placeholder "out"}/rplugin.vim" ]; in symlinkJoin { name = "neovim-${stdenv.lib.getVersion neovim}"; # Remove the symlinks created by symlinkJoin which we need to perform # extra actions upon - postBuild = '' - rm $out/bin/nvim - makeWrapper ${lib.escapeShellArgs initialMakeWrapperArgs} ${extraMakeWrapperArgs} - '' - + lib.optionalString stdenv.isLinux '' + postBuild = lib.optionalString stdenv.isLinux '' rm $out/share/applications/nvim.desktop substitute ${neovim}/share/applications/nvim.desktop $out/share/applications/nvim.desktop \ --replace 'TryExec=nvim' "TryExec=$out/bin/nvim" \ --replace 'Name=Neovim' 'Name=WrappedNeovim' '' - + optionalString withPython '' - makeWrapper ${pythonEnv}/bin/python $out/bin/nvim-python --unset PYTHONPATH + + optionalString withPython2 '' + makeWrapper ${python2Env}/bin/python $out/bin/nvim-python --unset PYTHONPATH '' + optionalString withPython3 '' makeWrapper ${python3Env}/bin/python3 $out/bin/nvim-python3 --unset PYTHONPATH @@ -146,9 +64,14 @@ let + optionalString viAlias '' ln -s $out/bin/nvim $out/bin/vi '' - + optionalString (configure != {}) '' + + optionalString (manifestRc != null) (let + manifestWrapperArgs = + [ "${neovim}/bin/nvim" "${placeholder "out"}/bin/nvim-wrapper" ] ++ wrapperArgs; + in '' echo "Generating remote plugin manifest" export NVIM_RPLUGIN_MANIFEST=$out/rplugin.vim + makeWrapper ${lib.escapeShellArgs manifestWrapperArgs} + # Some plugins assume that the home directory is accessible for # initializing caches, temporary files, etc. Even if the plugin isn't # actively used, it may throw an error as soon as Neovim is launched @@ -164,8 +87,8 @@ let # (swap/viminfo) and redirect errors to stderr. # Only display the log on error since it will contain a few normally # irrelevant messages. - if ! $out/bin/nvim \ - -u ${vimUtils.vimrcFile (configure // { customRC = ""; })} \ + if ! $out/bin/nvim-wrapper \ + -u ${writeText "manifest.vim" manifestRc} \ -i NONE -n \ -E -V1rplugins.log -s \ +UpdateRemotePlugins +quit! > outfile 2>&1; then @@ -173,7 +96,11 @@ let echo -e "\nGenerating rplugin.vim failed!" exit 1 fi - makeWrapper ${lib.escapeShellArgs finalMakeWrapperArgs} ${extraMakeWrapperArgs} + rm "${placeholder "out"}/bin/nvim-wrapper" + '') + + '' + rm $out/bin/nvim + makeWrapper ${lib.escapeShellArgs finalMakeWrapperArgs} ''; paths = [ neovim ]; diff --git a/pkgs/applications/editors/texmacs/default.nix b/pkgs/applications/editors/texmacs/default.nix index 91e2427a6c8..aeef43e3f0b 100644 --- a/pkgs/applications/editors/texmacs/default.nix +++ b/pkgs/applications/editors/texmacs/default.nix @@ -1,5 +1,5 @@ -{ stdenv, callPackage, - fetchurl, guile_1_8, qt4, xmodmap, which, makeWrapper, freetype, +{ lib, mkDerivation, callPackage, fetchurl, fetchpatch, + guile_1_8, qtbase, xmodmap, which, freetype, libjpeg, sqlite, tex ? null, @@ -16,23 +16,30 @@ let pname = "TeXmacs"; - version = "1.99.11"; + version = "1.99.13"; common = callPackage ./common.nix { inherit tex extraFonts chineseFonts japaneseFonts koreanFonts; }; in -stdenv.mkDerivation { +mkDerivation { name = "${pname}-${version}"; src = fetchurl { url = "https://www.texmacs.org/Download/ftp/tmftp/source/TeXmacs-${version}-src.tar.gz"; - sha256 = "12bp0f34izzqimz49lfpgf4lyz3h45s9xbmk8v6zsawdjki76alg"; + sha256 = "Aq0cS47QqmFQHelxRjANeJlgXCXagnYRykpAq7wHqbQ="; }; - cmakeFlags = [ - # Texmacs' cmake build as of writing defaults to Qt5, - # but we haven't updated to that yet. - "-DTEXMACS_GUI=Qt4" + patches = [ + # Minor patch for Qt 5.15 support, should be included in next release. + (fetchpatch { + url = "https://github.com/texmacs/texmacs/commit/3cf56af92326b74538f5e943928199ba6e963d0b.patch"; + sha256 = "+OBQmnKgvQZZkLx6ea773Dwq0o7L92Sex/kcVUhmg6Q="; + }) + # Fix returned version, lets hope they remember to bump the version next release. + (fetchpatch { + url = "https://github.com/texmacs/texmacs/commit/da5b67005d2fc31bb32ea1ead882c26af12d8cbb.patch"; + sha256 = "czMgdraQErrdvN83jY76P673L52BpQkDwntmKvF0Ykg="; + }) ]; enableParallelBuilding = true; @@ -40,8 +47,7 @@ stdenv.mkDerivation { nativeBuildInputs = [ cmake pkgconfig ]; buildInputs = [ guile_1_8 - qt4 - makeWrapper + qtbase ghostscriptX freetype libjpeg @@ -51,18 +57,26 @@ stdenv.mkDerivation { ]; NIX_LDFLAGS = "-lz"; - postInstall = "wrapProgram $out/bin/texmacs --suffix PATH : " + - (if ghostscriptX == null then "" else "${ghostscriptX}/bin:") + - (if aspell == null then "" else "${aspell}/bin:") + - (if tex == null then "" else "${tex}/bin:") + - (if git == null then "" else "${git}/bin:") + - (if python3 == null then "" else "${python3}/bin:") + - "${xmodmap}/bin:${which}/bin"; + qtWrapperArgs = [ + "--suffix" "PATH" ":" (lib.makeBinPath [ + xmodmap + which + ghostscriptX + aspell + tex + git + python3 + ]) + ]; + + postFixup = '' + wrapQtApp $out/bin/texmacs + ''; inherit (common) postPatch; meta = common.meta // { - maintainers = [ stdenv.lib.maintainers.roconnor ]; - platforms = stdenv.lib.platforms.gnu ++ stdenv.lib.platforms.linux; # arbitrary choice + maintainers = [ lib.maintainers.roconnor ]; + platforms = lib.platforms.gnu ++ lib.platforms.linux; # arbitrary choice }; } diff --git a/pkgs/applications/editors/textadept/default.nix b/pkgs/applications/editors/textadept/default.nix index bb771c89010..0456d013bbb 100644 --- a/pkgs/applications/editors/textadept/default.nix +++ b/pkgs/applications/editors/textadept/default.nix @@ -1,6 +1,7 @@ { lib, stdenv, fetchhg, fetchurl, gtk2, glib, pkgconfig, unzip, ncurses, zip }: + stdenv.mkDerivation rec { - version = "10.2"; + version = "10.8"; pname = "textadept"; nativeBuildInputs = [ pkgconfig ]; @@ -11,7 +12,7 @@ stdenv.mkDerivation rec { src = fetchhg { url = "http://foicica.com/hg/textadept"; rev = "textadept_${version}"; - sha256 = "0fai8xqddkkprmbf0cf8wwgv7ccfdb1iyim30nppm2m16whkc8fl"; + sha256 = "sha256-dEZSx2tuHTWYhk9q5iGlrWTAvDvKaM8HaHwXcFcv33s="; }; preConfigure = @@ -19,10 +20,6 @@ stdenv.mkDerivation rec { "ln -s ${fetchurl params} $PWD/src/${name}" ) (import ./deps.nix)) + '' - # work around trying to download stuff in `make deps` - function wget() { true; } - export -f wget - cd src make deps ''; @@ -31,12 +28,17 @@ stdenv.mkDerivation rec { make curses ''; + preInstall = '' + mkdir -p $out/share/applications + mkdir -p $out/share/pixmaps + ''; + postInstall = '' make curses install PREFIX=$out MAKECMDGOALS=curses ''; makeFlags = [ - "PREFIX=$(out)" + "PREFIX=$(out) WGET=true PIXMAPS_DIR=$(out)/share/pixmaps" ]; meta = with stdenv.lib; { diff --git a/pkgs/applications/editors/textadept/deps.nix b/pkgs/applications/editors/textadept/deps.nix index 80306191ff1..3ab778dddb2 100644 --- a/pkgs/applications/editors/textadept/deps.nix +++ b/pkgs/applications/editors/textadept/deps.nix @@ -1,23 +1,23 @@ { - "542782a4df7d.zip" = { - url = "http://foicica.com/hg/scintilla/archive/542782a4df7d.zip"; - sha256 = "1qwxxcj86z9y7ij05j60lcp1awy2c9ck0vnn9z6c732sqjza0zx5"; + "99fa62b828ee.zip" = { + url = "http://foicica.com/hg/scintilla/archive/99fa62b828ee.zip"; + sha256 = "sha256-QO4iGhx72CfB1/0Pp/Qab92qm98VZn/EkrHZGndoHVc="; }; "lua-5.3.5.tar.gz" = { url = "http://www.lua.org/ftp/lua-5.3.5.tar.gz"; sha256 = "1b2qn2rv96nmbm6zab4l877bd4zq7wpwm8drwjiy2ih4jqzysbhc"; }; - "lpeg-1.0.0.tar.gz" = { - url = "http://www.inf.puc-rio.br/~roberto/lpeg/lpeg-1.0.0.tar.gz"; - sha256 = "13mz18s359wlkwm9d9iqlyyrrwjc6iqfpa99ai0icam2b3khl68h"; + "lpeg-1.0.2.tar.gz" = { + url = "http://www.inf.puc-rio.br/~roberto/lpeg/lpeg-1.0.2.tar.gz"; + sha256 = "sha256-SNZldgUbbHg4j6rQm3BJMJMmRYj80PJY3aqxzdShX/4="; }; - "v_1_6_3.zip" = { - url = "https://github.com/keplerproject/luafilesystem/archive/v_1_6_3.zip"; - sha256 = "044s125im2irb4i42nnc5shvjj25fp4vsdbzd6b0va5igj0f6h4y"; + "v1_7_0_2.zip" = { + url = "https://github.com/keplerproject/luafilesystem/archive/v1_7_0_2.zip"; + sha256 = "sha256-kXSriR8dOStCpYeyr7c3+VZez4qGDS5aK/9FeFj1hHg="; }; - "6435a42450c7.zip" = { - url = "http://foicica.com/hg/gtdialog/archive/6435a42450c7.zip"; - sha256 = "1vxn89sif3qccksb6x5iprysqhjg69g7nyxlgrg31q397dmsg1ym"; + "db67f8a489e8.zip" = { + url = "http://foicica.com/hg/gtdialog/archive/db67f8a489e8.zip"; + sha256 = "sha256-UIvjbDrg3jyz7t2tm4y1zzH/TG6Kqaz3LE5y2U6OHuM="; }; "cdk-5.0-20150928.tgz" = { url = "http://invisible-mirror.net/archives/cdk/cdk-5.0-20150928.tgz"; diff --git a/pkgs/applications/editors/vscode/update-vscode.sh b/pkgs/applications/editors/vscode/update-vscode.sh old mode 100644 new mode 100755 index 5066a8e4182..4974eb7e436 --- a/pkgs/applications/editors/vscode/update-vscode.sh +++ b/pkgs/applications/editors/vscode/update-vscode.sh @@ -1,6 +1,11 @@ #!/usr/bin/env nix-shell #!nix-shell -i bash -p curl gnugrep gnused gawk +# Update script for the vscode versions and hashes. +# Usually doesn't need to be called by hand, +# but is called by a bot: https://github.com/samuela/nixpkgs-upkeep/actions +# Call it by hand if the bot fails to automatically update the versions. + set -eou pipefail ROOT="$(dirname "$(readlink -f "$0")")" diff --git a/pkgs/applications/editors/vscode/update-vscodium.sh b/pkgs/applications/editors/vscode/update-vscodium.sh index 0e8ce6da5a0..0ddab6063ca 100755 --- a/pkgs/applications/editors/vscode/update-vscodium.sh +++ b/pkgs/applications/editors/vscode/update-vscodium.sh @@ -1,6 +1,11 @@ #!/usr/bin/env nix-shell #!nix-shell -i bash -p curl gnugrep gnused gawk +# Update script for the vscode versions and hashes. +# Usually doesn't need to be called by hand, +# but is called by a bot: https://github.com/samuela/nixpkgs-upkeep/actions +# Call it by hand if the bot fails to automatically update the versions. + set -eou pipefail ROOT="$(dirname "$(readlink -f "$0")")" diff --git a/pkgs/applications/editors/vscode/vscode.nix b/pkgs/applications/editors/vscode/vscode.nix index 6d87551a453..528a0496d91 100644 --- a/pkgs/applications/editors/vscode/vscode.nix +++ b/pkgs/applications/editors/vscode/vscode.nix @@ -11,8 +11,8 @@ let archive_fmt = if system == "x86_64-darwin" then "zip" else "tar.gz"; sha256 = { - x86_64-linux = "12nrv037an4f6h8hrbmysc0lk5wm492hywa7lp64n4d308zg5567"; - x86_64-darwin = "1z22hn2ngx2x5l9h6zsblpyzr85lyjzv2ayplscbgaa9ff52l429"; + x86_64-linux = "0mpb4641icr3z89y2rlh5anli40p1f48sl5xagr7h3nb5c84k10x"; + x86_64-darwin = "1azmc79zf72007qc1xndp9wdkd078mvqgv35hf231q7kdi6wzxcp"; }.${system}; in callPackage ./generic.nix rec { @@ -21,7 +21,7 @@ in # Please backport all compatible updates to the stable release. # This is important for the extension ecosystem. - version = "1.50.0"; + version = "1.50.1"; pname = "vscode"; executableName = "code" + lib.optionalString isInsiders "-insiders"; diff --git a/pkgs/applications/editors/vscode/vscodium.nix b/pkgs/applications/editors/vscode/vscodium.nix index 4e640f04a4f..650e88a260b 100644 --- a/pkgs/applications/editors/vscode/vscodium.nix +++ b/pkgs/applications/editors/vscode/vscodium.nix @@ -11,8 +11,8 @@ let archive_fmt = if system == "x86_64-darwin" then "zip" else "tar.gz"; sha256 = { - x86_64-linux = "19y25yfkls53w4qlmipfvjig7zykgwx1010ny58k339fv181vdyq"; - x86_64-darwin = "1ak3pfvwdg51hcv2kyqpnhzkl7k23k5qk197sf6rv02kgwan7pxl"; + x86_64-linux = "1sarih1yah69ympp12bmgyb0y9ybrxasppb47l58w05iz1wpn6v0"; + x86_64-darwin = "1pj041kccj2i77v223i86xxqj9bg88k0sfbshm7qiynwyj9p05ji"; }.${system}; sourceRoot = { @@ -27,7 +27,7 @@ in # Please backport all compatible updates to the stable release. # This is important for the extension ecosystem. - version = "1.49.3"; + version = "1.50.1"; pname = "vscodium"; executableName = "codium"; diff --git a/pkgs/applications/gis/grass/default.nix b/pkgs/applications/gis/grass/default.nix index 420f57bb93f..c1b7841dc58 100644 --- a/pkgs/applications/gis/grass/default.nix +++ b/pkgs/applications/gis/grass/default.nix @@ -3,6 +3,8 @@ , proj, gdal, geos, sqlite, postgresql, libmysqlclient, python2Packages, libLAS, proj-datumgrid }: +let inherit (stdenv) lib; in + stdenv.mkDerivation rec { name = "grass"; version = "7.6.1"; @@ -42,7 +44,7 @@ stdenv.mkDerivation rec { "--with-postgres-libs=${postgresql.lib}/lib/" # it complains about missing libmysqld but doesn't really seem to need it "--with-mysql" - "--with-mysql-includes=${libmysqlclient}/include/mysql" + "--with-mysql-includes=${lib.getDev libmysqlclient}/include/mysql" "--with-mysql-libs=${libmysqlclient}/lib/mysql" "--with-blas" "--with-liblas=${libLAS}/bin/liblas-config" diff --git a/pkgs/applications/graphics/cloudcompare/default.nix b/pkgs/applications/graphics/cloudcompare/default.nix index 209a6a4753b..26fabc364ba 100644 --- a/pkgs/applications/graphics/cloudcompare/default.nix +++ b/pkgs/applications/graphics/cloudcompare/default.nix @@ -18,17 +18,17 @@ mkDerivation rec { pname = "cloudcompare"; - version = "2.11.0"; + version = "2.11.2"; src = fetchFromGitHub { owner = "CloudCompare"; repo = "CloudCompare"; rev = "v${version}"; - sha256 = "02ahhhivgb9k1aygw1m35wdvhaizag1r98mb0r6zzrs5p4y64wlb"; + sha256 = "0sb2h08iaf6zrf54sg6ql6wm63q5vq0kpd3gffdm26z8w6j6wv3s"; # As of writing includes (https://github.com/CloudCompare/CloudCompare/blob/a1c589c006fc325e8b560c77340809b9c7e7247a/.gitmodules): # * libE57Format # * PoissonRecon - # In > 2.11 it will also contain + # In a future version it will also contain # * CCCoreLib fetchSubmodules = true; }; @@ -53,7 +53,7 @@ mkDerivation rec { ]; cmakeFlags = [ - # TODO: This will become -DCCCORELIB_USE_TBB=ON in > 2.11.0, see + # TODO: This will become -DCCCORELIB_USE_TBB=ON in a future version, see # https://github.com/CloudCompare/CloudCompare/commit/f5a0c9fd788da26450f3fa488b2cf0e4a08d255f "-DCOMPILE_CC_CORE_LIB_WITH_TBB=ON" "-DOPTION_USE_DXF_LIB=ON" diff --git a/pkgs/applications/graphics/drawio/default.nix b/pkgs/applications/graphics/drawio/default.nix index 5a5ce5d8b21..5c76e523c02 100644 --- a/pkgs/applications/graphics/drawio/default.nix +++ b/pkgs/applications/graphics/drawio/default.nix @@ -11,11 +11,11 @@ stdenv.mkDerivation rec { pname = "drawio"; - version = "13.7.3"; + version = "13.7.9"; src = fetchurl { url = "https://github.com/jgraph/drawio-desktop/releases/download/v${version}/draw.io-x86_64-${version}.rpm"; - sha256 = "14wcj9jbpv1rg0g7djihzzq088aj96mwys4rc9540ajbkbbm9d36"; + sha256 = "1h0baxh9gvshdfqb77x5m8v95lw4lw4djj3gwrna0jjpfhmcs4vq"; }; nativeBuildInputs = [ diff --git a/pkgs/applications/graphics/feh/default.nix b/pkgs/applications/graphics/feh/default.nix index 82128f81353..467e593025e 100644 --- a/pkgs/applications/graphics/feh/default.nix +++ b/pkgs/applications/graphics/feh/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchurl, makeWrapper , xorg, imlib2, libjpeg, libpng , curl, libexif, jpegexiforient, perlPackages -, enableAutoreload ? true }: +, enableAutoreload ? !stdenv.hostPlatform.isDarwin }: with stdenv.lib; diff --git a/pkgs/applications/graphics/freecad/default.nix b/pkgs/applications/graphics/freecad/default.nix index f9322add5c0..3a5d36dfac1 100644 --- a/pkgs/applications/graphics/freecad/default.nix +++ b/pkgs/applications/graphics/freecad/default.nix @@ -9,13 +9,13 @@ let pythonPackages = python3Packages; in mkDerivation rec { pname = "freecad-unstable"; - version = "2020-09-25"; + version = "2020-10-17"; src = fetchFromGitHub { owner = "FreeCAD"; repo = "FreeCAD"; - rev = "7616153b3c31ace006169cdc2fdafab484498858"; - sha256 = "1vffvzv3gkndfj2k8ik0afyk9rgngnr4aai5py66qd63qd7kmxch"; + rev = "f3bdaaa55a6c03b297924c40819d23e4603fa55b"; + sha256 = "1q1iy4i9k65v8z7h8a6r4bf5ycn124jp26xwp0xwbar4gnkx2jiq"; }; nativeBuildInputs = [ @@ -32,6 +32,7 @@ in mkDerivation rec { libGLU libXmu qtbase qttools qtwebengine qtxmlpatterns ] ++ (with pythonPackages; [ matplotlib pycollada shiboken2 pyside2 pyside2-tools pivy python boost + GitPython # for addon manager ]); cmakeFlags = [ diff --git a/pkgs/applications/graphics/freecad/stable.nix b/pkgs/applications/graphics/freecad/stable.nix deleted file mode 100644 index 657caeca8b3..00000000000 --- a/pkgs/applications/graphics/freecad/stable.nix +++ /dev/null @@ -1,85 +0,0 @@ -{ stdenv, mkDerivation, fetchFromGitHub, fetchpatch, cmake, ninja, coin3d, -xercesc, ode, eigen, qtbase, qttools, qtwebkit, wrapQtAppsHook, -opencascade-occt, gts, hdf5, vtk, medfile, zlib, python3Packages, swig, -gfortran, libXmu, soqt, libf2c, libGLU, makeWrapper, pkgconfig, mpi ? null }: - -assert mpi != null; - -let - pythonPackages = python3Packages; -in mkDerivation rec { - pname = "freecad"; - version = "0.18.4"; - - src = fetchFromGitHub { - owner = "FreeCAD"; - repo = "FreeCAD"; - rev = version; - sha256 = "1phs9a0px5fnzpyx930cz39p5dis0f0yajxzii3c3sazgkzrd55s"; - }; - - nativeBuildInputs = [ - cmake - ninja - pkgconfig - pythonPackages.pyside2-tools - wrapQtAppsHook - ]; - - buildInputs = [ - cmake coin3d xercesc ode eigen opencascade-occt gts - zlib swig gfortran soqt libf2c makeWrapper mpi vtk hdf5 medfile - libGLU libXmu qtbase qttools qtwebkit - ] ++ (with pythonPackages; [ - matplotlib pycollada shiboken2 pyside2 pyside2-tools pivy python boost - ]); - - # Fix missing app icon on Wayland. Has been upstreamed and should be safe to - # remove in versions >= 0.19 - patches = [ - (fetchpatch { - url = "https://github.com/FreeCAD/FreeCAD/commit/c4d2a358ca125d51d059dfd72dcbfba326196dfc.patch"; - sha256 = "0yqc9zrxgi2c2xcidm8wh7a9yznkphqvjqm9742qm5fl20p8gl4h"; - }) - ]; - - cmakeFlags = [ - "-DBUILD_QT5=ON" - "-DSHIBOKEN_INCLUDE_DIR=${pythonPackages.shiboken2}/include" - "-DSHIBOKEN_LIBRARY=Shiboken2::libshiboken" - ("-DPYSIDE_INCLUDE_DIR=${pythonPackages.pyside2}/include" - + ";${pythonPackages.pyside2}/include/PySide2/QtCore" - + ";${pythonPackages.pyside2}/include/PySide2/QtWidgets" - + ";${pythonPackages.pyside2}/include/PySide2/QtGui" - ) - "-DPYSIDE_LIBRARY=PySide2::pyside2" - ]; - - # This should work on both x86_64, and i686 linux - preBuild = '' - export NIX_LDFLAGS="-L${gfortran.cc}/lib64 -L${gfortran.cc}/lib $NIX_LDFLAGS"; - ''; - - # Their main() removes PYTHONPATH=, and we rely on it. - preConfigure = '' - sed '/putenv("PYTHONPATH/d' -i src/Main/MainGui.cpp - - qtWrapperArgs+=(--prefix PYTHONPATH : "$PYTHONPATH") - ''; - - qtWrapperArgs = [ - "--set COIN_GL_NO_CURRENT_CONTEXT_CHECK 1" - ]; - - postFixup = '' - mv $out/share/doc $out - ''; - - meta = with stdenv.lib; { - description = "General purpose Open Source 3D CAD/MCAD/CAx/CAE/PLM modeler"; - homepage = "https://www.freecadweb.org/"; - license = licenses.lgpl2Plus; - maintainers = with maintainers; [ viric gebner ]; - platforms = platforms.linux; - }; -} diff --git a/pkgs/applications/graphics/gnuclad/default.nix b/pkgs/applications/graphics/gnuclad/default.nix index fcb4bdb5374..c36d576cc8e 100644 --- a/pkgs/applications/graphics/gnuclad/default.nix +++ b/pkgs/applications/graphics/gnuclad/default.nix @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://launchpad.net/gnuclad"; - description = "gnuclad tries to help the environment by creating trees. It's primary use will be generating cladogram trees for the GNU/Linux distro timeline project."; + description = "gnuclad tries to help the environment by creating trees. Its primary use will be generating cladogram trees for the GNU/Linux distro timeline project"; license = licenses.gpl3Plus; maintainers = with maintainers; [ mog ]; platforms = platforms.linux; diff --git a/pkgs/applications/graphics/hydrus/default.nix b/pkgs/applications/graphics/hydrus/default.nix new file mode 100644 index 00000000000..556e5e30f3a --- /dev/null +++ b/pkgs/applications/graphics/hydrus/default.nix @@ -0,0 +1,112 @@ +{ stdenv +, fetchFromGitHub +, lzma +, qt5 +, wrapQtAppsHook +, miniupnpc_2 +, swftools +, pythonPackages +}: + +pythonPackages.buildPythonPackage { + pname = "hydrus"; + version = "413"; + format = "other"; + + src = fetchFromGitHub { + owner = "hydrusnetwork"; + repo = "hydrus"; + rev = "9fbed11bef499e01a6799b298bea7d0967d30430"; + sha256 = "1dl7qpzmlxl376lzm0chmwvf4nl55wz6fwcsw0ikb33rm8r33gq4"; + }; + + nativeBuildInputs = [ + wrapQtAppsHook + ]; + + propagatedBuildInputs = with pythonPackages; [ + beautifulsoup4 + html5lib + lxml + numpy + opencv4 + pillow + psutil + pyopenssl + pyyaml + requests + send2trash + service-identity + twisted + lz4 + lzma + pysocks + matplotlib + qtpy + pyside2 + ]; + + checkInputs = with pythonPackages; [ nose httmock ]; + + # most tests are failing, presumably because we are not using test.py + checkPhase = '' + nosetests $src/hydrus/test \ + -e TestClientAPI \ + -e TestClientConstants \ + -e TestClientDaemons \ + -e TestClientData \ + -e TestClientDB \ + -e TestClientDBDuplicates \ + -e TestClientDBTags \ + -e TestClientImageHandling \ + -e TestClientImportOptions \ + -e TestClientListBoxes \ + -e TestClientMigration \ + -e TestClientNetworking \ + -e TestClientTags \ + -e TestClientThreading \ + -e TestDialogs \ + -e TestFunctions \ + -e TestHydrusNATPunch \ + -e TestHydrusSerialisable \ + -e TestHydrusServer \ + -e TestHydrusSessions \ + -e TestServer \ + ''; + + extraOutputsToLink = [ "doc" ]; + + postPatch = '' + sed 's;os\.path\.join(\sHC\.BIN_DIR,.*;"${miniupnpc_2}/bin/upnpc";' \ + -i ./hydrus/core/HydrusNATPunch.py + + sed 's;os\.path\.join(\sHC\.BIN_DIR,.*;"${swftools}/bin/swfrender";' \ + -i ./hydrus/core/HydrusFlashHandling.py + ''; + + #doCheck = true; + + installPhase = '' + # Move the hydrus module and related directories + mkdir -p $out/${pythonPackages.python.sitePackages} + mv {hydrus,static} $out/${pythonPackages.python.sitePackages} + mv help $out/doc/ + + # install the hydrus binaries + mkdir -p $out/bin + install -m0755 server.py $out/bin/hydrus-server + install -m0755 client.py $out/bin/hydrus-client + ''; + + dontWrapQtApps = true; + preFixup = '' + makeWrapperArgs+=("''${qtWrapperArgs[@]}") + ''; + + meta = with stdenv.lib; { + description = "Danbooru-like image tagging and searching system for the desktop"; + license = licenses.wtfpl; + homepage = "https://hydrusnetwork.github.io/hydrus/"; + maintainers = [ maintainers.evanjs ]; + }; +} diff --git a/pkgs/applications/graphics/imv/default.nix b/pkgs/applications/graphics/imv/default.nix index 276c2cd3d7e..faf74873058 100644 --- a/pkgs/applications/graphics/imv/default.nix +++ b/pkgs/applications/graphics/imv/default.nix @@ -1,8 +1,23 @@ -{ stdenv, fetchFromGitHub -, freeimage, fontconfig, pkgconfig -, asciidoc, docbook_xsl, libxslt, cmocka -, librsvg, pango, libxkbcommon, wayland -, libGLU, icu +{ asciidoc +, cmocka +, docbook_xsl +, fetchFromGitHub +, fontconfig +, freeimage +, icu +, libGLU +, libheif +, libjpeg_turbo +, libpng +, librsvg +, libtiff +, libxkbcommon +, libxslt +, netsurf +, pango +, pkgconfig +, stdenv +, wayland }: stdenv.mkDerivation rec { @@ -10,37 +25,31 @@ stdenv.mkDerivation rec { version = "4.1.0"; src = fetchFromGitHub { - owner = "eXeC64"; - repo = "imv"; - rev = "v${version}"; + owner = "eXeC64"; + repo = "imv"; + rev = "v${version}"; sha256 = "0gk8g178i961nn3bls75a8qpv6wvfvav6hd9lxca1skaikd33zdx"; }; - preBuild = '' - # Version is 4.0.1, but Makefile was not updated - sed -i 's/echo v4\.0\.0/echo v4.0.1/' Makefile - ''; - - nativeBuildInputs = [ - asciidoc - cmocka - docbook_xsl - libxslt - ]; + nativeBuildInputs = [ asciidoc cmocka docbook_xsl libxslt ]; buildInputs = [ freeimage + icu libGLU + libjpeg_turbo librsvg libxkbcommon + netsurf.libnsgif pango pkgconfig wayland - icu ]; installFlags = [ "PREFIX=$(out)" "CONFIGPREFIX=$(out)/etc" ]; + makeFlags = [ "BACKEND_LIBJPEG=yes" "BACKEND_LIBNSGIF=yes" ]; + postFixup = '' # The `bin/imv` script assumes imv-wayland or imv-x11 in PATH, # so we have to fix those to the binaries we installed into the /nix/store @@ -53,9 +62,9 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "A command line image viewer for tiling window managers"; - homepage = "https://github.com/eXeC64/imv"; - license = licenses.gpl2; + homepage = "https://github.com/eXeC64/imv"; + license = licenses.gpl2; maintainers = with maintainers; [ rnhmjoj markus1189 ]; - platforms = platforms.all; + platforms = platforms.all; }; } diff --git a/pkgs/applications/graphics/krita/default.nix b/pkgs/applications/graphics/krita/default.nix index 95a3e1e0928..6ffe7f3c4fa 100644 --- a/pkgs/applications/graphics/krita/default.nix +++ b/pkgs/applications/graphics/krita/default.nix @@ -10,11 +10,11 @@ mkDerivation rec { pname = "krita"; - version = "4.3.0"; + version = "4.4.0"; src = fetchurl { url = "https://download.kde.org/stable/${pname}/${version}/${pname}-${version}.tar.xz"; - sha256 = "19qlpp9ds60bab73pwi64dq1zn4zn2hcdkrxhjr1j438mc4pflsd"; + sha256 = "0ydmxql8iym62q0nqwn9mnb94jz1nh84i6bni0mgzwjk8p4zfzw3"; }; # *somtimes* fails with can't find ui_manager.h, also see https://github.com/NixOS/nixpkgs/issues/35359 diff --git a/pkgs/applications/graphics/lightburn/default.nix b/pkgs/applications/graphics/lightburn/default.nix index 7fcec93446d..da5caeff3a0 100644 --- a/pkgs/applications/graphics/lightburn/default.nix +++ b/pkgs/applications/graphics/lightburn/default.nix @@ -40,7 +40,7 @@ stdenv.mkDerivation rec { ''; meta = { - description = "LightBurn is layout, editing, and control software for your laser cutter."; + description = "Layout, editing, and control software for your laser cutter"; homepage = "https://lightburnsoftware.com/"; license = stdenv.lib.licenses.unfree; maintainers = with stdenv.lib.maintainers; [ q3k ]; diff --git a/pkgs/applications/graphics/meshlab/default.nix b/pkgs/applications/graphics/meshlab/default.nix index 75940fdc45b..50962d54eb2 100644 --- a/pkgs/applications/graphics/meshlab/default.nix +++ b/pkgs/applications/graphics/meshlab/default.nix @@ -87,7 +87,7 @@ mkDerivation rec { enableParallelBuilding = true; meta = { - description = "A system for processing and editing 3D triangular meshes."; + description = "A system for processing and editing 3D triangular meshes"; homepage = "https://www.meshlab.net/"; license = lib.licenses.gpl3; maintainers = with lib.maintainers; [ viric ]; diff --git a/pkgs/applications/graphics/vuescan/default.nix b/pkgs/applications/graphics/vuescan/default.nix new file mode 100644 index 00000000000..142e8f0b69f --- /dev/null +++ b/pkgs/applications/graphics/vuescan/default.nix @@ -0,0 +1,107 @@ +{ stdenv +, fetchurl +, gnutar +, autoPatchelfHook +, glibc +, gtk2 +, xorg +, libgudev +, undmg +}: + +let + inherit (stdenv.hostPlatform) system; + throwSystem = throw "Unsupported system: ${system}"; + + pname = "vuescan"; + + # Minor versions are released using the same file name + version = "9.7"; + versionString = builtins.replaceStrings ["."] [""] version; + + src = let + base = "https://www.hamrick.com/files/"; + in { + x86_64-darwin = fetchurl { + url = "${base}/vuex64${versionString}.dmg"; + sha256 = "045ihd2pj0zmzjfwn2qmv5114yvs9vf6mw6sf4x3hwcdmpk40sfh"; + }; + i686-darwin = fetchurl { + url = "${base}/vuex32${versionString}.dmg"; + sha256 = "0nny1jm3s1nr7xm03mcy3zgxvslznnvc8a5gn93gjww6gwg9rcn6"; + }; + x86_64-linux = fetchurl { + url = "${base}/vuex64${versionString}.tgz"; + sha256 = "0jkj92w3y66dcxwq3kkg7vhqxljwf9dqs563xbkh1r7piyjfwycm"; + }; + i686-linux = fetchurl { + url = "${base}/vuex32${versionString}.tgz"; + sha256 = "03qac9c0sg21jwz91nzzwk3ml8byv06ay9wiq00dl62nmhs20r5m"; + }; + aarch64-linux = fetchurl { + url = "${base}/vuea64${versionString}.tgz"; + sha256 = "17viy7kcb78j0p3ik99psabmkgpwpmgvk96wjhn9aar48gpyr1wj"; + }; + armv6l-linux = fetchurl { + url = "${base}/vuea32${versionString}.tgz"; + sha256 = "0m7sp18bdf2l2yf3q3z6c3i0bm4mq2h4ndm6qfvyknip0h11gv7i"; + }; + }.${system} or throwSystem; + + meta = with stdenv.lib; { + description = "Scanner software supporting a wide range of devices"; + homepage = "https://hamrick.com/"; + license = licenses.unfree; + maintainers = with maintainers; [ evax ]; + platforms = [ + "x86_64-darwin" "i686-darwin" + "x86_64-linux" "i686-linux" + "aarch64-linux" "armv6l-linux" + ]; + }; + + linux = stdenv.mkDerivation rec { + inherit pname version src meta; + + # Stripping the binary breaks the license form + dontStrip = true; + + nativeBuildInputs = [ + gnutar + autoPatchelfHook + ]; + + buildInputs = [ + glibc + gtk2 + xorg.libSM + libgudev + ]; + + unpackPhase = '' + tar xfz $src + ''; + + installPhase = '' + install -m755 -D VueScan/vuescan $out/bin/vuescan + ''; + }; + + darwin = stdenv.mkDerivation { + inherit pname version src meta; + + nativeBuildInputs = [ undmg ]; + + sourceRoot = { + x86_64-darwin = "vuex64${versionString}.dmg"; + i686-darwin = "vuex32${versionString}.dmg"; + }.${system} or throwSystem; + + installPhase = '' + mkdir -p $out/Applications/VueScan.app + cp -R . $out/Applications/VueScan.app + ''; + }; +in if stdenv.isDarwin + then darwin + else linux diff --git a/pkgs/applications/graphics/write_stylus/default.nix b/pkgs/applications/graphics/write_stylus/default.nix index 8396ce72e50..3c2ad8f4fab 100644 --- a/pkgs/applications/graphics/write_stylus/default.nix +++ b/pkgs/applications/graphics/write_stylus/default.nix @@ -53,7 +53,7 @@ mkDerivation rec { meta = with stdenv.lib; { homepage = "http://www.styluslabs.com/"; - description = "Write is a word processor for handwriting."; + description = "Write is a word processor for handwriting"; platforms = platforms.linux; license = stdenv.lib.licenses.unfree; maintainers = with maintainers; [ oyren ]; diff --git a/pkgs/applications/graphics/xournalpp/default.nix b/pkgs/applications/graphics/xournalpp/default.nix index ba396bfd92c..da453b42678 100644 --- a/pkgs/applications/graphics/xournalpp/default.nix +++ b/pkgs/applications/graphics/xournalpp/default.nix @@ -22,13 +22,13 @@ stdenv.mkDerivation rec { pname = "xournalpp"; - version = "1.0.18"; + version = "1.0.19"; src = fetchFromGitHub { owner = "xournalpp"; repo = pname; rev = version; - sha256 = "0a9ygbmd4dwgck3k8wsrm2grynqa0adb12wwspzmzvpisbadffjy"; + sha256 = "05nx4cmrka6hwdn7r91yy4h46qpa9k7iy9dkgaq3hrkh9z3fxlkq"; }; nativeBuildInputs = [ cmake gettext pkgconfig wrapGAppsHook ]; @@ -54,8 +54,8 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Xournal++ is a handwriting Notetaking software with PDF annotation support"; - homepage = "https://github.com/xournalpp/xournalpp"; - license = licenses.gpl2; + homepage = "https://xournalpp.github.io/"; + license = licenses.gpl2Plus; maintainers = with maintainers; [ andrew-d sikmir ]; platforms = platforms.linux; }; diff --git a/pkgs/applications/kde/bomber.nix b/pkgs/applications/kde/bomber.nix index c3f47780259..f42a6a01871 100644 --- a/pkgs/applications/kde/bomber.nix +++ b/pkgs/applications/kde/bomber.nix @@ -7,7 +7,7 @@ mkDerivation { name = "bomber"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.bomber"; - description = "Bomber is a single player arcade game"; + description = "A single player arcade game"; longDescription = '' Bomber is a single player arcade game. The player is invading various cities in a plane that is decreasing in height. diff --git a/pkgs/applications/kde/default.nix b/pkgs/applications/kde/default.nix index 9622404c456..4713c9ecf49 100644 --- a/pkgs/applications/kde/default.nix +++ b/pkgs/applications/kde/default.nix @@ -107,6 +107,7 @@ let kcharselect = callPackage ./kcharselect.nix {}; kcolorchooser = callPackage ./kcolorchooser.nix {}; kdebugsettings = callPackage ./kdebugsettings.nix {}; + kdeconnect-kde = callPackage ./kdeconnect-kde.nix {}; kdegraphics-mobipocket = callPackage ./kdegraphics-mobipocket.nix {}; kdegraphics-thumbnailers = callPackage ./kdegraphics-thumbnailers.nix {}; kdenetwork-filesharing = callPackage ./kdenetwork-filesharing.nix {}; diff --git a/pkgs/applications/kde/fetch.sh b/pkgs/applications/kde/fetch.sh index 90e1cf43f6b..dc023c57a7e 100644 --- a/pkgs/applications/kde/fetch.sh +++ b/pkgs/applications/kde/fetch.sh @@ -1 +1 @@ -WGET_ARGS=(http://download.kde.org/stable/release-service/20.08.1/src) +WGET_ARGS=(http://download.kde.org/stable/release-service/20.08.2/src) diff --git a/pkgs/applications/kde/granatier.nix b/pkgs/applications/kde/granatier.nix index f0b7cde5b2c..c02fa0fef2e 100644 --- a/pkgs/applications/kde/granatier.nix +++ b/pkgs/applications/kde/granatier.nix @@ -7,7 +7,7 @@ mkDerivation { name = "granatier"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.granatier"; - description = "Granatier is a clone of the classic Bomberman game"; + description = "Clone of the classic Bomberman game"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/kalzium.nix b/pkgs/applications/kde/kalzium.nix index 5bb51a6b4e1..cf579caa9cc 100644 --- a/pkgs/applications/kde/kalzium.nix +++ b/pkgs/applications/kde/kalzium.nix @@ -4,7 +4,7 @@ mkDerivation { name = "kalzium"; meta = with lib; { homepage = "https://kde.org/applications/en/utilities/org.kde.kalzium"; - description = "Kalzium is a program that shows you the Periodic Table of Elements"; + description = "Program that shows you the Periodic Table of Elements"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/kapman.nix b/pkgs/applications/kde/kapman.nix index 68af796dda4..5f4cc40138c 100644 --- a/pkgs/applications/kde/kapman.nix +++ b/pkgs/applications/kde/kapman.nix @@ -4,7 +4,7 @@ mkDerivation { name = "kapman"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.kapman"; - description = "Kapman is a clone of the well known game Pac-Man"; + description = "Clone of the well known game Pac-Man"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/katomic.nix b/pkgs/applications/kde/katomic.nix index a1d0f12b6a1..2690cfc0589 100644 --- a/pkgs/applications/kde/katomic.nix +++ b/pkgs/applications/kde/katomic.nix @@ -4,7 +4,7 @@ mkDerivation { name = "katomic"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.katomic"; - description = "KAtomic is a fun educational game built around molecular geometry"; + description = "Fun educational game built around molecular geometry"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/kblackbox.nix b/pkgs/applications/kde/kblackbox.nix index 669c089df80..ce0d8e36b91 100644 --- a/pkgs/applications/kde/kblackbox.nix +++ b/pkgs/applications/kde/kblackbox.nix @@ -4,7 +4,7 @@ mkDerivation { name = "kblackbox"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.kblackbox"; - description = "KBlackbox is a game of hide and seek played on a grid of boxes"; + description = "Game of hide and seek played on a grid of boxes"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/kblocks.nix b/pkgs/applications/kde/kblocks.nix index 1dedabb2a08..a11a6e25744 100644 --- a/pkgs/applications/kde/kblocks.nix +++ b/pkgs/applications/kde/kblocks.nix @@ -4,7 +4,7 @@ mkDerivation { name = "kblocks"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.kblocks"; - description = "KBlocks is the classic falling blocks game"; + description = "Classic falling blocks game"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/kbounce.nix b/pkgs/applications/kde/kbounce.nix index a24d2155180..b67e3ce0217 100644 --- a/pkgs/applications/kde/kbounce.nix +++ b/pkgs/applications/kde/kbounce.nix @@ -4,7 +4,7 @@ mkDerivation { name = "kbounce"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.kbounce"; - description = "KBounce is a single player arcade game with the elements of puzzle"; + description = "Single player arcade game with the elements of puzzle"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/misc/kdeconnect/default.nix b/pkgs/applications/kde/kdeconnect-kde.nix similarity index 64% rename from pkgs/applications/misc/kdeconnect/default.nix rename to pkgs/applications/kde/kdeconnect-kde.nix index 31e919e3770..83e54d1fa80 100644 --- a/pkgs/applications/misc/kdeconnect/default.nix +++ b/pkgs/applications/kde/kdeconnect-kde.nix @@ -1,39 +1,32 @@ { mkDerivation -, lib -, fetchurl -, fetchpatch , extra-cmake-modules +, fetchpatch , kcmutils , kconfigwidgets , kdbusaddons , kdoctools -, kiconthemes , ki18n -, knotifications -, qca-qt5 -, libfakekey -, libXtst -, qtx11extras -, qtmultimedia -, qtgraphicaleffects -, sshfs -, makeWrapper -, kwayland +, kiconthemes , kio -, kpeoplevcard -, kpeople , kirigami2 +, knotifications +, kpeople +, kpeoplevcard +, kwayland +, lib +, libXtst +, libfakekey +, makeWrapper , pulseaudio-qt +, qca-qt5 +, qtgraphicaleffects +, qtmultimedia +, qtx11extras +, sshfs }: -mkDerivation rec { - pname = "kdeconnect"; - version = "20.08.1"; - - src = fetchurl { - url = "https://download.kde.org/stable/release-service/${version}/src/${pname}-kde-${version}.tar.xz"; - sha256 = "0s76djgpx08jfmh99c7kx18mnr3w7bv4hdra120nicq89mmy7gwf"; - }; +mkDerivation { + name = "kdeconnect-kde"; patches = [ # https://invent.kde.org/network/kdeconnect-kde/-/merge_requests/328 @@ -44,39 +37,36 @@ mkDerivation rec { ]; buildInputs = [ - libfakekey - libXtst - qtmultimedia - qtgraphicaleffects - pulseaudio-qt - kpeoplevcard - kpeople - kirigami2 - ki18n - kiconthemes kcmutils kconfigwidgets kdbusaddons - knotifications - qca-qt5 - qtx11extras - makeWrapper - kwayland + ki18n + kiconthemes kio + kirigami2 + knotifications + kpeople + kpeoplevcard + kwayland + libXtst + libfakekey + pulseaudio-qt + qca-qt5 + qtgraphicaleffects + qtmultimedia + qtx11extras ]; - nativeBuildInputs = [ extra-cmake-modules kdoctools ]; + nativeBuildInputs = [ extra-cmake-modules kdoctools makeWrapper ]; - postInstall = '' - wrapProgram $out/libexec/kdeconnectd --prefix PATH : ${lib.makeBinPath [ sshfs ]} - ''; - - enableParallelBuilding = true; + qtWrapperArgs = [ + "--prefix PATH : ${lib.makeBinPath [ sshfs ]}" + ]; meta = with lib; { description = "KDE Connect provides several features to integrate your phone and your computer"; - homepage = "https://community.kde.org/KDEConnect"; - license = with licenses; [ gpl2 ]; + homepage = "https://community.kde.org/KDEConnect"; + license = with licenses; [ gpl2 ]; maintainers = with maintainers; [ fridh ]; }; } diff --git a/pkgs/applications/kde/kdiamond.nix b/pkgs/applications/kde/kdiamond.nix index 26cd731beaf..6c124f9450e 100644 --- a/pkgs/applications/kde/kdiamond.nix +++ b/pkgs/applications/kde/kdiamond.nix @@ -4,7 +4,7 @@ mkDerivation { name = "kdiamond"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.kdiamond"; - description = "KDiamond is a single player puzzle game"; + description = "A single player puzzle game"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/kfloppy.nix b/pkgs/applications/kde/kfloppy.nix index 525520c159b..a8747047f42 100644 --- a/pkgs/applications/kde/kfloppy.nix +++ b/pkgs/applications/kde/kfloppy.nix @@ -4,7 +4,7 @@ mkDerivation { name = "kfloppy"; meta = with lib; { homepage = "https://kde.org/applications/en/utilities/org.kde.kfloppy"; - description = "KFloppy is a utility to format 3.5\" and 5.25\" floppy disks"; + description = "Utility to format 3.5\" and 5.25\" floppy disks"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/klettres.nix b/pkgs/applications/kde/klettres.nix index e8e0a0aa59a..aaddceb7bd6 100644 --- a/pkgs/applications/kde/klettres.nix +++ b/pkgs/applications/kde/klettres.nix @@ -4,7 +4,7 @@ mkDerivation { name = "klettres"; meta = with lib; { homepage = "https://kde.org/applications/en/utilities/org.kde.klettres"; - description = "KLettres is an application specially designed to help the user to learn an alphabet"; + description = "An application specially designed to help the user to learn an alphabet"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/klines.nix b/pkgs/applications/kde/klines.nix index c6ad883dd63..7fadf409bd3 100644 --- a/pkgs/applications/kde/klines.nix +++ b/pkgs/applications/kde/klines.nix @@ -4,7 +4,7 @@ mkDerivation { name = "klines"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.klines"; - description = "KLines is a simple but highly addictive one player game"; + description = "A simple but highly addictive one player game"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/kmag.nix b/pkgs/applications/kde/kmag.nix index 701d8dbf130..fdac690cf22 100644 --- a/pkgs/applications/kde/kmag.nix +++ b/pkgs/applications/kde/kmag.nix @@ -4,7 +4,7 @@ mkDerivation { name = "kmag"; meta = with lib; { homepage = "https://kde.org/applications/en/utilities/org.kde.kmag"; - description = "KMag is a small utility for Linux to magnify a part of the screen"; + description = "A small Linux utility to magnify a part of the screen"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/kmines.nix b/pkgs/applications/kde/kmines.nix index 9314cca4a23..edf3114244b 100644 --- a/pkgs/applications/kde/kmines.nix +++ b/pkgs/applications/kde/kmines.nix @@ -4,7 +4,7 @@ mkDerivation { name = "kmines"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.kmines"; - description = "KMines is a classic Minesweeper game"; + description = "A classic Minesweeper game"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/knetwalk.nix b/pkgs/applications/kde/knetwalk.nix index 88d08b56bb1..f34bb84f0a0 100644 --- a/pkgs/applications/kde/knetwalk.nix +++ b/pkgs/applications/kde/knetwalk.nix @@ -4,7 +4,7 @@ mkDerivation { name = "knetwalk"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.knetwalk"; - description = "KNetWalk is a single player logic game"; + description = "A single player logic game"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/knights.nix b/pkgs/applications/kde/knights.nix index ee5c37e2e94..8b71493ff18 100644 --- a/pkgs/applications/kde/knights.nix +++ b/pkgs/applications/kde/knights.nix @@ -4,7 +4,7 @@ mkDerivation { name = "knights"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.knights"; - description = "KNights is a chess game"; + description = "A chess game"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/kollision.nix b/pkgs/applications/kde/kollision.nix index 3c0c814cd15..6cb9995459a 100644 --- a/pkgs/applications/kde/kollision.nix +++ b/pkgs/applications/kde/kollision.nix @@ -4,7 +4,7 @@ mkDerivation { name = "kollision"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.kollision"; - description = "Kollision is a casual game"; + description = "A casual game"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/kreversi.nix b/pkgs/applications/kde/kreversi.nix index 77ac4f05c8a..9f4be46738b 100644 --- a/pkgs/applications/kde/kreversi.nix +++ b/pkgs/applications/kde/kreversi.nix @@ -4,7 +4,7 @@ mkDerivation { name = "kreversi"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.kreversi"; - description = "KReversi is a simple one player strategy game played against the computer"; + description = "A simple one player strategy game played against the computer"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/kshisen.nix b/pkgs/applications/kde/kshisen.nix index 7909ed8b2a3..5be17bb8ee0 100644 --- a/pkgs/applications/kde/kshisen.nix +++ b/pkgs/applications/kde/kshisen.nix @@ -4,7 +4,7 @@ mkDerivation { name = "kshisen"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.kshisen"; - description = "KShisen is a solitaire-like game played using the standard set of Mahjong tiles"; + description = "A solitaire-like game played using the standard set of Mahjong tiles"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/ksquares.nix b/pkgs/applications/kde/ksquares.nix index 94a639a0d37..12d989befe1 100644 --- a/pkgs/applications/kde/ksquares.nix +++ b/pkgs/applications/kde/ksquares.nix @@ -4,7 +4,7 @@ mkDerivation { name = "ksquares"; meta = with lib; { homepage = "https://kde.org/applications/en/games/org.kde.ksquares"; - description = "KSquares is a game of Dots and Boxes"; + description = "A game of Dots and Boxes"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/kteatime.nix b/pkgs/applications/kde/kteatime.nix index a69cb991acc..812a13aa118 100644 --- a/pkgs/applications/kde/kteatime.nix +++ b/pkgs/applications/kde/kteatime.nix @@ -4,7 +4,7 @@ mkDerivation { name = "kteatime"; meta = with lib; { homepage = "https://kde.org/applications/en/utilities/org.kde.kteatime"; - description = "KTeaTime is a handy timer for steeping tea"; + description = "A handy timer for steeping tea"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/ktimer.nix b/pkgs/applications/kde/ktimer.nix index aa755f35ce4..bdb8f2c687b 100644 --- a/pkgs/applications/kde/ktimer.nix +++ b/pkgs/applications/kde/ktimer.nix @@ -4,7 +4,7 @@ mkDerivation { name = "ktimer"; meta = with lib; { homepage = "https://kde.org/applications/en/utilities/org.kde.ktimer"; - description = "KTimer is a little tool to execute programs after some time"; + description = "A little tool to execute programs after some time"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/kturtle.nix b/pkgs/applications/kde/kturtle.nix index e16c86dc136..c495b16fef7 100644 --- a/pkgs/applications/kde/kturtle.nix +++ b/pkgs/applications/kde/kturtle.nix @@ -4,7 +4,7 @@ mkDerivation { name = "kturtle"; meta = with lib; { homepage = "https://kde.org/applications/en/utilities/org.kde.kturtle"; - description = "KTurtle is an educational programming environment for learning how to program"; + description = "An educational programming environment for learning how to program"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/kwave.nix b/pkgs/applications/kde/kwave.nix index 349787d000b..78a3d9ab4a5 100644 --- a/pkgs/applications/kde/kwave.nix +++ b/pkgs/applications/kde/kwave.nix @@ -5,7 +5,7 @@ mkDerivation { name = "kwave"; meta = with lib; { homepage = "https://kde.org/applications/en/multimedia/org.kde.kwave"; - description = "KWave is a simple media player"; + description = "A simple media player"; maintainers = with maintainers; [ freezeboy ]; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/kde/okular.nix b/pkgs/applications/kde/okular.nix index 3bcdb9ca842..288b2ceb807 100644 --- a/pkgs/applications/kde/okular.nix +++ b/pkgs/applications/kde/okular.nix @@ -4,7 +4,7 @@ breeze-icons, chmlib ? null, discount, djvulibre, ebook_tools, kactivities, karchive, kbookmarks, kcompletion, kconfig, kconfigwidgets, kcoreaddons, kdbusaddons, kdegraphics-mobipocket, kiconthemes, kjs, khtml, kio, kparts, - kpty, kwallet, kwindowsystem, libkexiv2, libspectre, libzip, phonon, poppler, + kpty, kpurpose, kwallet, kwindowsystem, libkexiv2, libspectre, libzip, phonon, poppler, qca-qt5, qtdeclarative, qtsvg, threadweaver, kcrash }: @@ -14,7 +14,7 @@ mkDerivation { buildInputs = [ breeze-icons discount djvulibre ebook_tools kactivities karchive kbookmarks kcompletion kconfig kconfigwidgets kcoreaddons kdbusaddons - kdegraphics-mobipocket kiconthemes kjs khtml kio kparts kpty kwallet + kdegraphics-mobipocket kiconthemes kjs khtml kio kparts kpty kpurpose kwallet kwindowsystem libkexiv2 libspectre libzip phonon poppler qca-qt5 qtdeclarative qtsvg threadweaver kcrash ] ++ lib.optional (!stdenv.isAarch64) chmlib; diff --git a/pkgs/applications/kde/srcs.nix b/pkgs/applications/kde/srcs.nix index 5bcb48acc18..6966c07ec0a 100644 --- a/pkgs/applications/kde/srcs.nix +++ b/pkgs/applications/kde/srcs.nix @@ -4,1731 +4,1731 @@ { akonadi = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/akonadi-20.08.1.tar.xz"; - sha256 = "f930de5fae376f138e87c6d67357ab799a3397d865b55c50f771b4427d85f495"; - name = "akonadi-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/akonadi-20.08.2.tar.xz"; + sha256 = "d3a4b3b3f543734ad5428ca0e573b8dbf9e05f42d51e1aab39b5b5266c16be7d"; + name = "akonadi-20.08.2.tar.xz"; }; }; akonadi-calendar = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/akonadi-calendar-20.08.1.tar.xz"; - sha256 = "896ec2523203022bf70e23897d59b64c8bfffad4ead5b6756555ab34a4047ef5"; - name = "akonadi-calendar-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/akonadi-calendar-20.08.2.tar.xz"; + sha256 = "20173d00dc764f6a1e8e0b433d96b982ceadcb17e9bd067caf2967fd5440eb51"; + name = "akonadi-calendar-20.08.2.tar.xz"; }; }; akonadi-calendar-tools = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/akonadi-calendar-tools-20.08.1.tar.xz"; - sha256 = "21ccc2e1090eeda1eba0c29ab51c3bae1e8f57aedead569c4ed7995f5ad6cffc"; - name = "akonadi-calendar-tools-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/akonadi-calendar-tools-20.08.2.tar.xz"; + sha256 = "2069cc3a12f0da3f10181c13d19b1048d8f2e0c0f4a4e14309a7e6f08aa74ab9"; + name = "akonadi-calendar-tools-20.08.2.tar.xz"; }; }; akonadiconsole = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/akonadiconsole-20.08.1.tar.xz"; - sha256 = "077ee646babbc4ca4075505d3dd830f4f5b8b1253617228e96f565fe23bcaad9"; - name = "akonadiconsole-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/akonadiconsole-20.08.2.tar.xz"; + sha256 = "dc03a1986b6e7af0d26af927009d567da1e1835cc2bb5cc1b5732ffca3ecde9d"; + name = "akonadiconsole-20.08.2.tar.xz"; }; }; akonadi-contacts = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/akonadi-contacts-20.08.1.tar.xz"; - sha256 = "eee775960345ec0ca13b0550bb56fb6875867921fa7b9412a2c4b0dfb8ab4366"; - name = "akonadi-contacts-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/akonadi-contacts-20.08.2.tar.xz"; + sha256 = "e4a2696e0e0cf69926d34f160a4581131a1da8244355787564b75dec06db1b30"; + name = "akonadi-contacts-20.08.2.tar.xz"; }; }; akonadi-import-wizard = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/akonadi-import-wizard-20.08.1.tar.xz"; - sha256 = "d895c866a05f0a55ca8f2d852ed0ae3fdc13aa160cbcbaf9f1017443458d9526"; - name = "akonadi-import-wizard-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/akonadi-import-wizard-20.08.2.tar.xz"; + sha256 = "639d72ae3d32f681ddb046a87d625871b485785602cf35b817e89004def4dc5e"; + name = "akonadi-import-wizard-20.08.2.tar.xz"; }; }; akonadi-mime = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/akonadi-mime-20.08.1.tar.xz"; - sha256 = "3c7a57f798a7db1e1aebc3162c20f58a0fb9ed9e703078344ef1de215c73ff0b"; - name = "akonadi-mime-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/akonadi-mime-20.08.2.tar.xz"; + sha256 = "5699a1d44a9812c9530bc61af5822ff34a573b168d72230cd8261c05065c06e3"; + name = "akonadi-mime-20.08.2.tar.xz"; }; }; akonadi-notes = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/akonadi-notes-20.08.1.tar.xz"; - sha256 = "afc0cdba349f0b2edece44221a7c3c532d07251ec51f05994e83a1d79c4f50fc"; - name = "akonadi-notes-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/akonadi-notes-20.08.2.tar.xz"; + sha256 = "4897ca92d6b68f75254e1c419438275a94fa678c9f062dcd91c0267129886ca7"; + name = "akonadi-notes-20.08.2.tar.xz"; }; }; akonadi-search = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/akonadi-search-20.08.1.tar.xz"; - sha256 = "db305bfc55535d8812d84a119e4dcf04e7b87c345e7ac3a884469cbf55abca83"; - name = "akonadi-search-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/akonadi-search-20.08.2.tar.xz"; + sha256 = "618400950fa44f0c578ab51c3b311a47e0b2df47203f754e50bcc363201a9fc7"; + name = "akonadi-search-20.08.2.tar.xz"; }; }; akregator = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/akregator-20.08.1.tar.xz"; - sha256 = "21751a5a14b188649caeeb19cbcef877dd00548a29c073f8694e227d951c7a00"; - name = "akregator-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/akregator-20.08.2.tar.xz"; + sha256 = "4de4bd31dede5c09e0eb9e14d1da1d1979409eb1e28df5f95963086d4a49edc9"; + name = "akregator-20.08.2.tar.xz"; }; }; analitza = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/analitza-20.08.1.tar.xz"; - sha256 = "91c691df8be52255db9387549c6392ad2c5358c12e805f3a96520e2aa0c147de"; - name = "analitza-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/analitza-20.08.2.tar.xz"; + sha256 = "2fad01bf48199e3671559ec9a619f0d590af331922899c793f96fc90860ec487"; + name = "analitza-20.08.2.tar.xz"; }; }; ark = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/ark-20.08.1.tar.xz"; - sha256 = "32e8546b186b88efc9d4688e02def0b6225d921f9b92cfcd328417f09ec0f725"; - name = "ark-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/ark-20.08.2.tar.xz"; + sha256 = "ec061ac07687b5a3541af293e3bc2aa7bedcfe0ef38ba6e57e2704068a726ffc"; + name = "ark-20.08.2.tar.xz"; }; }; artikulate = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/artikulate-20.08.1.tar.xz"; - sha256 = "b626a6a38f6eb50d64607032d5b100351c4242e40a4a13cdce4769e188ee361a"; - name = "artikulate-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/artikulate-20.08.2.tar.xz"; + sha256 = "66545d85e25aa67816deea4b2b89b485181458a5bc117dad9588671d8b48b41c"; + name = "artikulate-20.08.2.tar.xz"; }; }; audiocd-kio = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/audiocd-kio-20.08.1.tar.xz"; - sha256 = "7662849929c96d1745ce4ac7ddc931be2eff5e3cc755f2cd959b4d3f4b20b9b0"; - name = "audiocd-kio-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/audiocd-kio-20.08.2.tar.xz"; + sha256 = "5f38c549fe8c3a4659ac8291c223327b765834e7668bc15a96047e20cdb11f01"; + name = "audiocd-kio-20.08.2.tar.xz"; }; }; baloo-widgets = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/baloo-widgets-20.08.1.tar.xz"; - sha256 = "9f48cb2f1b45e46828b1656abaeb60e836650015c07277ec52bea053d0058958"; - name = "baloo-widgets-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/baloo-widgets-20.08.2.tar.xz"; + sha256 = "e1d14b8dba911ebc1cee76dbcd44fa200418ba959d86ce567093b5fc3b700a07"; + name = "baloo-widgets-20.08.2.tar.xz"; }; }; blinken = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/blinken-20.08.1.tar.xz"; - sha256 = "53b30435ea0d83f713ecb53219173aa55c0d11194830972734a4acc9a5a28c5a"; - name = "blinken-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/blinken-20.08.2.tar.xz"; + sha256 = "c6e74033ab8ece83618c5cda0ab3cf327514b8e2e6b0e9daf484ce88f671a65e"; + name = "blinken-20.08.2.tar.xz"; }; }; bomber = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/bomber-20.08.1.tar.xz"; - sha256 = "a4b2f5dcce7e125da30bef6bcc9746b67f8451d2040696714686dd618d80a96c"; - name = "bomber-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/bomber-20.08.2.tar.xz"; + sha256 = "27c226b31bcdbbda0c9e304e428ca7451614c397a038e830f8052c381dae7215"; + name = "bomber-20.08.2.tar.xz"; }; }; bovo = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/bovo-20.08.1.tar.xz"; - sha256 = "5d5ee817a73de0deef6b7c35a798bda02c6d15e9dd0e7379a13c23c0832fe0d1"; - name = "bovo-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/bovo-20.08.2.tar.xz"; + sha256 = "936cab24a13900765f0c5a5afb6f155cb5a05bdb067f86b77e33af5f0e4c37d2"; + name = "bovo-20.08.2.tar.xz"; }; }; calendarsupport = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/calendarsupport-20.08.1.tar.xz"; - sha256 = "38d6e695725c8484e1492d431144a0ecd1b66535bc07ac77e1f0eb1499d8fc32"; - name = "calendarsupport-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/calendarsupport-20.08.2.tar.xz"; + sha256 = "83bcdd36689f762363a95b688b9377a3335b4fd58ad1d5efad36ad2b0cf7cc10"; 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+ version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/mbox-importer-20.08.1.tar.xz"; - sha256 = "262c8805539b7c766099c6287d1dbf88161afe6d32c1c6821ebe63cff4fe3b71"; - name = "mbox-importer-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/mbox-importer-20.08.2.tar.xz"; + sha256 = "3b3bee33683c534974255616f3b2f3baebf85363b2c24bbee9cc195ddf35ca9a"; + name = "mbox-importer-20.08.2.tar.xz"; }; }; messagelib = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/messagelib-20.08.1.tar.xz"; - sha256 = "fc41124e905456a3c5227ca6154dc3e77620e307458fbb19f5421cbfb04523b3"; - name = "messagelib-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/messagelib-20.08.2.tar.xz"; + sha256 = "5cf3a3f2b6473e60a7c2af10aa4eb1cfba25a4786132ee87b657b0dafb9f5028"; + name = "messagelib-20.08.2.tar.xz"; }; }; minuet = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/minuet-20.08.1.tar.xz"; - sha256 = "a640025550337f415f7bfaaad7f6ef7de667dd054131be2c313d894c3f6703ea"; - name = "minuet-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/minuet-20.08.2.tar.xz"; + sha256 = "24383168e2a0b7b319ecb37e2b1f3b039ad790a7e0f49385657f049565f1ef84"; + name = "minuet-20.08.2.tar.xz"; }; }; okular = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/okular-20.08.1.tar.xz"; - sha256 = "77b5d8e410a2a008ea63f60a561f99053ec07d92da6ee3afaeefd977aadebd83"; - name = "okular-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/okular-20.08.2.tar.xz"; + sha256 = "6f1885ed8050a55bb2cbf05089b452f555852e003ec7fe89fe472c0dbc92e65b"; + name = "okular-20.08.2.tar.xz"; }; }; palapeli = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/palapeli-20.08.1.tar.xz"; - sha256 = "31b847caa89b998dfa580553d96c656b05f2d85fdd88f0ba71e953762cefac90"; - name = "palapeli-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/palapeli-20.08.2.tar.xz"; + sha256 = "a31b0db2f3e77eac8f527d26f8ed0400fe5bcdb3a3970b925f14886bd1bcd63e"; + name = "palapeli-20.08.2.tar.xz"; }; }; parley = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/parley-20.08.1.tar.xz"; - sha256 = "9617a90c2d4f9ab5d928febc6bcd10c9023dcc10e9f1202bfb97b77019948f0c"; - name = "parley-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/parley-20.08.2.tar.xz"; + sha256 = "cf2f00925730d8baec66d422f058e4b3e979678e79c57898ceffd8650720bda6"; + name = "parley-20.08.2.tar.xz"; }; }; picmi = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/picmi-20.08.1.tar.xz"; - sha256 = "027e37a2c9dcf828684a0f8ffdcfc6451a2bd62976c10d990e471fa0f5ba97c3"; - name = "picmi-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/picmi-20.08.2.tar.xz"; + sha256 = "35f2bf3d8375618f97aee01c8f2421521b2cd5c11d7b14fc9a376026d74c82a5"; + name = "picmi-20.08.2.tar.xz"; }; }; pimcommon = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/pimcommon-20.08.1.tar.xz"; - sha256 = "58a33349bf932076f6be343ae64e23f146e2a6a96e3af8ce68dbd752f2c80dd9"; - name = "pimcommon-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/pimcommon-20.08.2.tar.xz"; + sha256 = "cba9e66153d36debe3f046363af7ff40a4ba263f33bfe20c7ec10b5bf9183deb"; + name = "pimcommon-20.08.2.tar.xz"; }; }; pim-data-exporter = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/pim-data-exporter-20.08.1.tar.xz"; - sha256 = "54092763e4b951f4e90a217c876107900e0706da68ca5517184e5da258ae95ec"; - name = "pim-data-exporter-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/pim-data-exporter-20.08.2.tar.xz"; + sha256 = "54b09a3f763004c805cc0dce8ab2e665116b7ef29419f22ad413aa250dcb4ac0"; + name = "pim-data-exporter-20.08.2.tar.xz"; }; }; pim-sieve-editor = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/pim-sieve-editor-20.08.1.tar.xz"; - sha256 = "f788038796f226bfe426835fc6f186e23f2c7f9fda8316dfa6af307d6936d4ad"; - name = "pim-sieve-editor-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/pim-sieve-editor-20.08.2.tar.xz"; + sha256 = "e8c590a0fddc5292172115b11fb75c5f847347079100617dbf321875642d7098"; + name = "pim-sieve-editor-20.08.2.tar.xz"; }; }; poxml = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/poxml-20.08.1.tar.xz"; - sha256 = "9f4bcafc664532706fe634ce8b0f410619d5e3c285526a7b61969155d75bbad2"; - name = "poxml-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/poxml-20.08.2.tar.xz"; + sha256 = "67d260349489e92ebce20253f9a3ccde5bb75eb13eb4d1a08a86c18c82e4a2a9"; + name = "poxml-20.08.2.tar.xz"; }; }; print-manager = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/print-manager-20.08.1.tar.xz"; - sha256 = "52d41ca3ae69e6e8e1eb4ddf1d516868dc436e81779053efdea5e3819545ca5b"; - name = "print-manager-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/print-manager-20.08.2.tar.xz"; + sha256 = "de21f8c428198b906f4ae438d6ced8d707b12c15578409c2aa2f7b2f73feb990"; + name = "print-manager-20.08.2.tar.xz"; }; }; rocs = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/rocs-20.08.1.tar.xz"; - sha256 = "3c5f764f06f6f5b7c68523be4fdd37e75b2249e0b15001bc39e55051d9e271ef"; - name = "rocs-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/rocs-20.08.2.tar.xz"; + sha256 = "2d8efd62b89dd36033bb3d818c82fee67e6efa2d2bb98dda0d4eab13baaee485"; + name = "rocs-20.08.2.tar.xz"; }; }; signon-kwallet-extension = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/signon-kwallet-extension-20.08.1.tar.xz"; - sha256 = "10a0ea806dc63cbf6c6d4794fe596c68355bccb3e08370d70ce7a8e95af448a5"; - name = "signon-kwallet-extension-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/signon-kwallet-extension-20.08.2.tar.xz"; + sha256 = "a271f4d09511171dcf1ebcdaf0b7205f9ee6a75b20ef0801f36d136f7b4a70dd"; + name = "signon-kwallet-extension-20.08.2.tar.xz"; }; }; spectacle = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/spectacle-20.08.1.tar.xz"; - sha256 = "4a01b5ef41901ff2e83bb517c2e96a978188b98cb62243eb541a317f57a2bd69"; - name = "spectacle-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/spectacle-20.08.2.tar.xz"; + sha256 = "9a467ea3b05981d588d39573cca375636b825ad8cab8a36ce48dbbc12425ab0d"; + name = "spectacle-20.08.2.tar.xz"; }; }; step = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/step-20.08.1.tar.xz"; - sha256 = "6e04930963676b1bfa55ee095914c7491a61bf3963c45ed4157f868175ee6605"; - name = "step-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/step-20.08.2.tar.xz"; + sha256 = "a52e4b6f281ba1a7afd4ab3ac7307080464147c4052ee222399135fe61ac7958"; + name = "step-20.08.2.tar.xz"; }; }; svgpart = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/svgpart-20.08.1.tar.xz"; - sha256 = "206c3741464f959ffbaea09bc918fc3e88f32fcf12928cd8c399ab44d4b1f228"; - name = "svgpart-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/svgpart-20.08.2.tar.xz"; + sha256 = "3a46b5bd9acf5372f73b602d155517f0dff47f3337bd8a46a580aae7480dd771"; + name = "svgpart-20.08.2.tar.xz"; }; }; sweeper = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/sweeper-20.08.1.tar.xz"; - sha256 = "722c25de8cc74fe7e8310d47a7e794f32e935331f89d4f5249fd045a83ce0431"; - name = "sweeper-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/sweeper-20.08.2.tar.xz"; + sha256 = "0c255ef15c1e32eb561b26f5b73a6c154730be583efbc5ee713aaed17de14091"; + name = "sweeper-20.08.2.tar.xz"; }; }; umbrello = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/umbrello-20.08.1.tar.xz"; - sha256 = "d980d67f8a878e01cd3af5499aa843df703f20cdecca8a14b59d87d13c747328"; - name = "umbrello-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/umbrello-20.08.2.tar.xz"; + sha256 = "0357b44646c750253e3e7ee323b9e49e854c4c8cdf340eb5a11b2d42edfc4cd7"; + name = "umbrello-20.08.2.tar.xz"; }; }; yakuake = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/yakuake-20.08.1.tar.xz"; - sha256 = "6768a360a3d79080e6e53821460ed27f6c2e47fa11077bbec3213d85385d6fac"; - name = "yakuake-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/yakuake-20.08.2.tar.xz"; + sha256 = "8a0aa3a97a9fdc781887a6cb6480cba5079cf8aacd3345b63f5eb6be4d91665a"; + name = "yakuake-20.08.2.tar.xz"; }; }; zeroconf-ioslave = { - version = "20.08.1"; + version = "20.08.2"; src = fetchurl { - url = "${mirror}/stable/release-service/20.08.1/src/zeroconf-ioslave-20.08.1.tar.xz"; - sha256 = "ca1685a22922057ba89510d71a11218bf47db0d0313aec2b55aca21932564866"; - name = "zeroconf-ioslave-20.08.1.tar.xz"; + url = "${mirror}/stable/release-service/20.08.2/src/zeroconf-ioslave-20.08.2.tar.xz"; + sha256 = "0ad34f8361ee3ecd669e396265135b534239994d3bec5e9e6a43b7b7bf5c04e4"; + name = "zeroconf-ioslave-20.08.2.tar.xz"; }; }; } diff --git a/pkgs/applications/misc/ArchiSteamFarm/default.nix b/pkgs/applications/misc/ArchiSteamFarm/default.nix index 86947c0bd66..8e55090e4c1 100644 --- a/pkgs/applications/misc/ArchiSteamFarm/default.nix +++ b/pkgs/applications/misc/ArchiSteamFarm/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "ArchiSteamFarm"; - version = "4.3.0.6"; + version = "4.3.1.0"; src = fetchurl { url = "https://github.com/JustArchiNET/ArchiSteamFarm/releases/download/${version}/ASF-generic.zip"; - sha256 = "1i8cb9j1dk2ikrdr11gah48wrsmw52gj70pv7yml1pzb435madm8"; + sha256 = "1q28byshh4wkfsfdb0sfdqq9a5da9k7i4nagsfpk0fzyajvzd4lx"; }; nativeBuildInputs = [ unzip makeWrapper jq ]; diff --git a/pkgs/applications/misc/archiver/default.nix b/pkgs/applications/misc/archiver/default.nix index fed1dc48470..aec0b9d5118 100644 --- a/pkgs/applications/misc/archiver/default.nix +++ b/pkgs/applications/misc/archiver/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "archiver"; - version = "3.3.2"; + version = "3.4.0"; src = fetchFromGitHub { owner = "mholt"; repo = pname; rev = "v${version}"; - sha256 = "1fi86g27c660g3mv9c5rfm0mmvh5q08704c19xnvrpwlg65glqrz"; + sha256 = "16jawybywqfkp68035bnf206a2w4khjw239saa429a21lxrfyk4a"; }; - vendorSha256 = "1rqhra3rfarq8f750zszkrm0jcsxa4sjbfpmcdlj5z000df699zq"; + vendorSha256 = "0m89ibj3dm58j49d99dhkn0ryivnianxz7lkpkvhs0cdbzzc02az"; buildFlagsArray = [ "-ldflags=-s -w -X main.version=${version} -X main.commit=${src.rev} -X main.date=unknown" ]; diff --git a/pkgs/applications/misc/barrier/default.nix b/pkgs/applications/misc/barrier/default.nix index 28b65d2b58b..f08b33f0985 100644 --- a/pkgs/applications/misc/barrier/default.nix +++ b/pkgs/applications/misc/barrier/default.nix @@ -5,13 +5,14 @@ mkDerivation rec { pname = "barrier"; - version = "2.3.2"; + version = "2.3.3"; src = fetchFromGitHub { owner = "debauchee"; repo = pname; rev = "v${version}"; - sha256 = "1gbg3p7c0vcsdzsjj1ssx6k8xpj3rpyvais12266f0xvnbvihczd"; + sha256 = "11vqkzpcjiv3pq6ps022223j6skgm1d23dj18n4a5nsf53wsvvp4"; + fetchSubmodules = true; }; buildInputs = [ curl xorg.libX11 xorg.libXext xorg.libXtst avahiWithLibdnssdCompat qtbase ]; diff --git a/pkgs/applications/misc/batsignal/default.nix b/pkgs/applications/misc/batsignal/default.nix index 56c508eaca9..77eb32166fe 100644 --- a/pkgs/applications/misc/batsignal/default.nix +++ b/pkgs/applications/misc/batsignal/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "batsignal"; - version = "1.1.2"; + version = "1.1.3"; src = fetchFromGitHub { owner = "electrickite"; repo = "batsignal"; rev = "${version}"; - sha256 = "0ss5dw7wpqsf96dig6r7x4fhf6brmjdy54jyyf5nk1h9kzw4d69r"; + sha256 = "12hj0j18db34x0xzgj6xmhvxm966d05z0rl3d9rlrcd2q96lilwf"; }; buildInputs = [ libnotify glib ]; diff --git a/pkgs/applications/misc/birdtray/default.nix b/pkgs/applications/misc/birdtray/default.nix index 8eb6a168721..df12d2b9f8f 100644 --- a/pkgs/applications/misc/birdtray/default.nix +++ b/pkgs/applications/misc/birdtray/default.nix @@ -12,13 +12,13 @@ mkDerivation rec { pname = "birdtray"; - version = "1.8.1"; + version = "1.9.0"; src = fetchFromGitHub { owner = "gyunaev"; repo = pname; - rev = version; - sha256 = "15l8drdmamq1dpqpj0h9ajj2r5vcs23cx421drvhfgs6bqlzd1hl"; + rev = "v${version}"; + sha256 = "1469ng6zk0qx0qfsihrnlz1j9i1wk0hx4vqdaplz9mdpyxvmlryk"; }; patches = [ diff --git a/pkgs/applications/misc/blugon/default.nix b/pkgs/applications/misc/blugon/default.nix index 896daa27f7c..9aa8d3da39a 100644 --- a/pkgs/applications/misc/blugon/default.nix +++ b/pkgs/applications/misc/blugon/default.nix @@ -13,6 +13,12 @@ stdenv.mkDerivation rec { buildInputs = [ python3 libX11 libXrandr ]; + # Remove at next release + # https://github.com/jumper149/blugon/commit/d262cd05 + postPatch = '' + sed -i 's,CC = gcc,CC ?= gcc,g' backends/scg/Makefile + ''; + makeFlags = [ "PREFIX=$(out)" ]; meta = with stdenv.lib; { diff --git a/pkgs/applications/misc/calcurse/default.nix b/pkgs/applications/misc/calcurse/default.nix index 9f55975764f..a3cad7d9f2e 100644 --- a/pkgs/applications/misc/calcurse/default.nix +++ b/pkgs/applications/misc/calcurse/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "calcurse"; - version = "4.6.0"; + version = "4.7.0"; src = fetchurl { url = "https://calcurse.org/files/${pname}-${version}.tar.gz"; - sha256 = "0hzhdpkkn75jlymanwzl69hrrf1pw29hrchr11wlxqjpl43h62gs"; + sha256 = "0dc4bka2l9z03bnlygsnl06l1zi2wbn29rkc02b13x2kdab7arpg"; }; buildInputs = [ ncurses gettext python3 python3Packages.wrapPython ]; diff --git a/pkgs/applications/misc/clipcat/default.nix b/pkgs/applications/misc/clipcat/default.nix new file mode 100644 index 00000000000..244770e138f --- /dev/null +++ b/pkgs/applications/misc/clipcat/default.nix @@ -0,0 +1,64 @@ +{ lib, fetchFromGitHub, installShellFiles, rustPlatform, rustfmt, xorg +, pkgconfig, llvmPackages, clang, protobuf, python3 }: + +rustPlatform.buildRustPackage rec { + pname = "clipcat"; + version = "0.4.19"; + + src = fetchFromGitHub { + owner = "xrelkd"; + repo = pname; + rev = "v${version}"; + sha256 = "1lhnm521qqy3aw2iyk1dv4yc5ms0c5x5iipx96bz6v6y0cnmf4kw"; + }; + + cargoSha256 = "04iflyvz8g53z658rkxafiyi2m9kzxwl3p1xgkjq7vacmz5jk15c"; + + LIBCLANG_PATH = "${llvmPackages.libclang}/lib"; + + # needed for internal protobuf c wrapper library + PROTOC = "${protobuf}/bin/protoc"; + PROTOC_INCLUDE = "${protobuf}/include"; + + nativeBuildInputs = [ + pkgconfig + + clang + llvmPackages.libclang + + rustfmt + protobuf + + python3 + + installShellFiles + ]; + buildInputs = [ xorg.libxcb ]; + + cargoBuildFlags = [ "--features=all" ]; + + postInstall = '' + installShellCompletion --bash --name clipcatd completions/bash-completion/completions/clipcatd + installShellCompletion --fish --name clipcatd.fish completions/fish/completions/clipcatd.fish + installShellCompletion --zsh --name _clipcatd completions/zsh/site-functions/_clipcatd + + installShellCompletion --bash --name clipcatctl completions/bash-completion/completions/clipcatctl + installShellCompletion --fish --name clipcatctl.fish completions/fish/completions/clipcatctl.fish + installShellCompletion --zsh --name _clipcatctl completions/zsh/site-functions/_clipcatctl + + installShellCompletion --bash --name clipcat-menu completions/bash-completion/completions/clipcat-menu + installShellCompletion --fish --name clipcat-menu.fish completions/fish/completions/clipcat-menu.fish + installShellCompletion --zsh --name _clipcat-menu completions/zsh/site-functions/_clipcat-menu + + installShellCompletion --bash --name clipcat-notify completions/bash-completion/completions/clipcat-notify + installShellCompletion --fish --name clipcat-notify.fish completions/fish/completions/clipcat-notify.fish + installShellCompletion --zsh --name _clipcat-notify completions/zsh/site-functions/_clipcat-notify + ''; + + meta = with lib; { + description = "Clipboard Manager written in Rust Programming Language"; + license = licenses.gpl3; + platforms = platforms.linux; + maintainers = with maintainers; [ xrelkd ]; + }; +} diff --git a/pkgs/applications/misc/copyq/default.nix b/pkgs/applications/misc/copyq/default.nix index 7cf89a74e10..de1dacd50c2 100644 --- a/pkgs/applications/misc/copyq/default.nix +++ b/pkgs/applications/misc/copyq/default.nix @@ -5,13 +5,13 @@ mkDerivation rec { pname = "CopyQ"; - version = "3.12.0"; + version = "3.13.0"; src = fetchFromGitHub { owner = "hluk"; repo = "CopyQ"; rev = "v${version}"; - sha256 = "04jidibf0b80c5vd659pz2wibmggjyyj9yz2bw7j4g84hwraksxb"; + sha256 = "0qssyavx0dkgsyj2myqg8n7sih8niy960nyb1yknsbjm37iqraah"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/misc/corectrl/default.nix b/pkgs/applications/misc/corectrl/default.nix new file mode 100644 index 00000000000..cee390d064d --- /dev/null +++ b/pkgs/applications/misc/corectrl/default.nix @@ -0,0 +1,74 @@ +{ stdenv +, fetchFromGitLab +, extra-cmake-modules +, botan2 +, karchive +, kauth +, libdrm +, mesa-demos +, procps +, utillinux +, vulkan-tools +, qtbase +, qtcharts +, qtquickcontrols2 +, qtsvg +, qttools +, qtxmlpatterns +, wrapQtAppsHook +} : + +stdenv.mkDerivation rec{ + pname = "corectrl"; + version = "1.1.1"; + + src = fetchFromGitLab { + owner = "corectrl"; + repo = "corectrl"; + rev = "v${version}"; + sha256 = "sha256-YQDrxPqCa3OzNKd3UiAffqqvOrgbXmDFJGjYPetolyY="; + }; + + nativeBuildInputs = [ + extra-cmake-modules + wrapQtAppsHook + ]; + buildInputs = [ + botan2 + karchive + kauth + libdrm + mesa-demos + procps + utillinux + vulkan-tools + qtbase + qtcharts + qtquickcontrols2 + qtsvg + qttools + qtxmlpatterns + ]; + + runtimeDeps = [ mesa-demos vulkan-tools ]; + binPath = stdenv.lib.makeBinPath runtimeDeps; + + dontWrapQtApps = true; + + postInstall = '' + wrapQtApp $out/bin/corectrl --prefix PATH ":" ${binPath} + ''; + + meta = with stdenv.lib; { + homepage = "https://gitlab.com/corectrl/corectrl/"; + description = "Control your computer hardware via application profiles"; + longDescription = '' + CoreCtrl is a Free and Open Source GNU/Linux application that allows you + to control with ease your computer hardware using application profiles. It + aims to be flexible, comfortable and accessible to regular users. + ''; + license = licenses.gpl3Plus; + platforms = platforms.linux; + }; +} +# TODO: report upstream that libdrm is not detected at configure time diff --git a/pkgs/applications/misc/dbeaver/default.nix b/pkgs/applications/misc/dbeaver/default.nix index c5cd4fa6c7e..547a6056685 100644 --- a/pkgs/applications/misc/dbeaver/default.nix +++ b/pkgs/applications/misc/dbeaver/default.nix @@ -7,7 +7,7 @@ stdenv.mkDerivation rec { pname = "dbeaver-ce"; - version = "7.2.2"; + version = "7.2.3"; desktopItem = makeDesktopItem { name = "dbeaver"; @@ -30,7 +30,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://dbeaver.io/files/${version}/dbeaver-ce-${version}-linux.gtk.x86_64.tar.gz"; - sha256 = "08dm10smmzrpsc4vc5p3p6fbkg6a5r1sgmbdgr2ihkbk28gylfh0"; + sha256 = "sha256-XYAe+e9zK/fvxBJ2Caz9/95++JzIQykXj8953IocDZU="; }; installPhase = '' diff --git a/pkgs/applications/misc/dockbarx/default.nix b/pkgs/applications/misc/dockbarx/default.nix index 97510bc3b45..463f7db6b0c 100644 --- a/pkgs/applications/misc/dockbarx/default.nix +++ b/pkgs/applications/misc/dockbarx/default.nix @@ -30,7 +30,7 @@ pythonPackages.buildPythonApplication rec { meta = with stdenv.lib; { homepage = "https://launchpad.net/dockbar/"; - description = "DockBarX is a lightweight taskbar / panel replacement for Linux which works as a stand-alone dock"; + description = "Lightweight taskbar / panel replacement for Linux which works as a stand-alone dock"; license = licenses.gpl3; platforms = platforms.linux; maintainers = [ maintainers.volth ]; diff --git a/pkgs/applications/misc/doing/default.nix b/pkgs/applications/misc/doing/default.nix index 48e45328f67..e539cf3ae19 100644 --- a/pkgs/applications/misc/doing/default.nix +++ b/pkgs/applications/misc/doing/default.nix @@ -11,7 +11,7 @@ bundlerEnv { passthru.updateScript = bundlerUpdateScript "doing"; meta = with lib; { - description = "A command line tool for keeping track of what you’re doing and tracking what you’ve done."; + description = "A command line tool for keeping track of what you’re doing and tracking what you’ve done"; longDescription = '' doing is a basic CLI for adding and listing "what was I doing" reminders in a TaskPaper-formatted text file. It allows for multiple diff --git a/pkgs/applications/misc/dstask/default.nix b/pkgs/applications/misc/dstask/default.nix index d5c02f69552..0eeb0d9cab6 100644 --- a/pkgs/applications/misc/dstask/default.nix +++ b/pkgs/applications/misc/dstask/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "dstask"; - version = "0.21"; + version = "0.23"; src = fetchFromGitHub { owner = "naggie"; repo = pname; rev = "v${version}"; - sha256 = "0af85rs4s0wfnibdhn28qycvy90aafkczccs5vyh36y7cnyhvgkl"; + sha256 = "15hr0ivwvm2lzpi8l5y5a3hya3i7r85pxna961m24gd4f8gs4cjl"; }; # Set vendorSha256 to null because dstask vendors its dependencies (meaning diff --git a/pkgs/applications/misc/electron-cash/default.nix b/pkgs/applications/misc/electron-cash/default.nix index 12362823cc5..fe263dd6692 100644 --- a/pkgs/applications/misc/electron-cash/default.nix +++ b/pkgs/applications/misc/electron-cash/default.nix @@ -3,13 +3,13 @@ python3Packages.buildPythonApplication rec { pname = "electron-cash"; - version = "4.1.1"; + version = "4.2.0"; src = fetchFromGitHub { owner = "Electron-Cash"; repo = "Electron-Cash"; rev = version; - sha256 = "1fllz2s20lg4hrppzmnlgjy9mrq7gaq66l2apb3vz1avzvsjw3gm"; + sha256 = "0ixsx4224jilc5zis6wbsbxqxv10mm5sksrzq15xp30zz0bzb6md"; }; propagatedBuildInputs = with python3Packages; [ @@ -48,7 +48,7 @@ python3Packages.buildPythonApplication rec { checkPhase = '' unset HOME - pytest lib/tests + pytest electroncash/tests ''; postInstall = '' diff --git a/pkgs/applications/misc/fslint/default.nix b/pkgs/applications/misc/fslint/default.nix index f6e1071ac5e..1f2ec280549 100644 --- a/pkgs/applications/misc/fslint/default.nix +++ b/pkgs/applications/misc/fslint/default.nix @@ -32,7 +32,7 @@ in stdenv.mkDerivation rec { ''; meta = with lib; { - description = "A utility to find and clean various forms of lint on a filesystem."; + description = "A utility to find and clean various forms of lint on a filesystem"; homepage = "https://www.pixelbeat.org/fslint/"; license = licenses.gpl2Plus; maintainers = [ maintainers.dasj19 ]; diff --git a/pkgs/applications/misc/fsv/default.nix b/pkgs/applications/misc/fsv/default.nix index 8b6898958d3..ff556621f9a 100644 --- a/pkgs/applications/misc/fsv/default.nix +++ b/pkgs/applications/misc/fsv/default.nix @@ -20,7 +20,7 @@ in stdenv.mkDerivation rec { version = "0.9-1"; src = fetchFromGitHub { - owner = "mcuelenaere"; + owner = "mcuelenaere"; repo = "fsv"; rev = "${pname}-${version}"; sha256 = "0n09jd7yqj18mx6zqbg7kab4idg5llr15g6avafj74fpg1h7iimj"; @@ -35,7 +35,7 @@ in stdenv.mkDerivation rec { buildInputs = [ file gtk2 libGLU gtkglarea ]; meta = with stdenv.lib; { - description = "fsv is a file system visualizer in cyberspace"; + description = "File system visualizer in cyberspace"; longDescription = '' fsv (pronounced eff-ess-vee) is a file system visualizer in cyberspace. It lays out files and directories in three dimensions, geometrically diff --git a/pkgs/applications/misc/gallery-dl/default.nix b/pkgs/applications/misc/gallery-dl/default.nix index ffe7d4ec47d..8135dce4d7a 100644 --- a/pkgs/applications/misc/gallery-dl/default.nix +++ b/pkgs/applications/misc/gallery-dl/default.nix @@ -2,11 +2,11 @@ python3Packages.buildPythonApplication rec { pname = "gallery_dl"; - version = "1.15.1"; + version = "1.15.2"; src = python3Packages.fetchPypi { inherit pname version; - sha256 = "1pysh0gz3f3dxk5bfkzaii4myrgik396mf6vlks50inpbnslmqsl"; + sha256 = "0f2d1ixg0ir7ispxxggv378dc0m55k9y19075swf893maxf07f35"; }; propagatedBuildInputs = with python3Packages; [ requests ]; @@ -15,6 +15,7 @@ python3Packages.buildPythonApplication rec { pytestFlagsArray = [ # requires network access "--ignore=test/test_results.py" + "--ignore=test/test_downloader.py" ]; meta = { diff --git a/pkgs/applications/misc/geoipupdate/default.nix b/pkgs/applications/misc/geoipupdate/default.nix index ee6ed27ddda..1f2c275b13d 100644 --- a/pkgs/applications/misc/geoipupdate/default.nix +++ b/pkgs/applications/misc/geoipupdate/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "geoipupdate"; - version = "4.3.0"; + version = "4.5.0"; src = fetchFromGitHub { owner = "maxmind"; repo = "geoipupdate"; rev = "v${version}"; - sha256 = "08h14bf4z2gx9sy34jpi2pvxv3i8g9ypl222hzdjsp2ixhl0jia9"; + sha256 = "0lhz7i4lprsik3s41y19vphsyc29vz6cbxikmvkmy6xjn40khjfr"; }; - vendorSha256 = "0q4byhvs1c1xm4qjvs2vyf98vdv121qn0z51arcf7k4ayrys5xcx"; + vendorSha256 = "1f858k8cl0dgiw124jv0p9jhi9aqxnc3nmc7hksw70fla2nzjrv0"; doCheck = false; diff --git a/pkgs/applications/misc/gmtp/default.nix b/pkgs/applications/misc/gmtp/default.nix index 5ed69e7bc69..c568afac31e 100644 --- a/pkgs/applications/misc/gmtp/default.nix +++ b/pkgs/applications/misc/gmtp/default.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation { ''; meta = { - description = "A simple MP3 and Media player client for UNIX and UNIX like systems."; + description = "A simple MP3 and Media player client for UNIX and UNIX like systems"; homepage = "https://gmtp.sourceforge.io"; platforms = stdenv.lib.platforms.linux; maintainers = [ ]; diff --git a/pkgs/applications/misc/go-jira/default.nix b/pkgs/applications/misc/go-jira/default.nix index 8b3ca1e2d8d..001f3d1de4c 100644 --- a/pkgs/applications/misc/go-jira/default.nix +++ b/pkgs/applications/misc/go-jira/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "go-jira"; - version = "1.0.24"; + version = "1.0.27"; src = fetchFromGitHub { rev = "v${version}"; owner = "go-jira"; repo = "jira"; - sha256 = "1qpimh39hsg75mb32hlvxmd7jj5b0cmhdkqz3dizfcnidllr3grd"; + sha256 = "1sw56aqghfxh88mfchf0nvqld0x7w22jfwx13pd24slxv1iag1nb"; }; - vendorSha256 = "18jwxnkv94lsxfv57ga519knxm077cc8chp5c992ipk58a04nv18"; + vendorSha256 = "0d64gkkzfm6hbgqaibj26fpaqnjs50p1675ycrshdhn6blb5mbxg"; doCheck = false; diff --git a/pkgs/applications/misc/googler/default.nix b/pkgs/applications/misc/googler/default.nix index de93dc6f43e..1eca26d7be0 100644 --- a/pkgs/applications/misc/googler/default.nix +++ b/pkgs/applications/misc/googler/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "googler"; - version = "4.2"; + version = "4.3.1"; src = fetchFromGitHub { owner = "jarun"; repo = pname; rev = "v${version}"; - sha256 = "0c480wzc7q4pks1f6mnayr580c73jhzshliz4hgznzc7zwcdf41w"; + sha256 = "04wa0mlbfjnzwham2dpd9lch7800js4vp3ikgjl4qnwilvr1lw74"; }; buildInputs = [ python ]; @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://github.com/jarun/googler"; description = "Google Search, Google Site Search, Google News from the terminal"; - license = licenses.gpl3; + license = licenses.gpl3Plus; maintainers = with maintainers; [ koral filalex77 ]; platforms = python.meta.platforms; }; diff --git a/pkgs/applications/misc/grsync/default.nix b/pkgs/applications/misc/grsync/default.nix index 8d17ff09204..e1c9902c6ae 100644 --- a/pkgs/applications/misc/grsync/default.nix +++ b/pkgs/applications/misc/grsync/default.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { ]; meta = with stdenv.lib; { - description = "Grsync is used to synchronize folders, files and make backups"; + description = "Synchronize folders, files and make backups"; homepage = "http://www.opbyte.it/grsync/"; license = licenses.gpl1; platforms = platforms.linux; diff --git a/pkgs/applications/misc/gsimplecal/default.nix b/pkgs/applications/misc/gsimplecal/default.nix index e83e349b21c..158a7fc8fc6 100644 --- a/pkgs/applications/misc/gsimplecal/default.nix +++ b/pkgs/applications/misc/gsimplecal/default.nix @@ -9,6 +9,10 @@ stdenv.mkDerivation rec { sha256 = "1sa05ifjp41xipfspk5n6l3wzpzmp3i45q88l01p4l6k6drsq336"; }; + postPatch = '' + sed -ie '/sys\/sysctl.h/d' src/Unique.cpp + ''; + enableParallelBuilding = true; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/applications/misc/heimer/default.nix b/pkgs/applications/misc/heimer/default.nix index 19034c1dc76..2a443303e20 100644 --- a/pkgs/applications/misc/heimer/default.nix +++ b/pkgs/applications/misc/heimer/default.nix @@ -2,13 +2,13 @@ mkDerivation rec { pname = "heimer"; - version = "1.19.0"; + version = "1.20.0"; src = fetchFromGitHub { owner = "juzzlin"; repo = pname; rev = version; - sha256 = "18paabqfxz49fahdi4fs5z870aynmyfj3xw8q768qffgc26zhl3m"; + sha256 = "01pgmwq539a0z7xsgx60vz6hmnr0c72xp6apx75qkvjsqbwmzhjh"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/misc/hugo/default.nix b/pkgs/applications/misc/hugo/default.nix index 37965fd6e3e..72ebefb98e7 100644 --- a/pkgs/applications/misc/hugo/default.nix +++ b/pkgs/applications/misc/hugo/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "hugo"; - version = "0.75.1"; + version = "0.76.5"; src = fetchFromGitHub { owner = "gohugoio"; repo = pname; rev = "v${version}"; - sha256 = "1c3l3q2xkibl1lz2mbvhgj94s6d9g5nakhpzj252s3m3cgk4w5wh"; + sha256 = "0p7zz9cif1vihhs21nvh4n3y1p2cwpga59rilpam7yvza4nzx7ay"; }; - vendorSha256 = "0gdd8fqd4mwg69wj8dxmm5wh1pjhdc189l2gy6njgpmwh93xbvdg"; + vendorSha256 = "0kiqy8n2df52gsgsbmr96rph8lpnw06g622123hlwk7kqg0z9ifh"; doCheck = false; @@ -22,7 +22,7 @@ buildGoModule rec { subPackages = [ "." ]; meta = with stdenv.lib; { - description = "A fast and modern static website engine."; + description = "A fast and modern static website engine"; homepage = "https://gohugo.io"; license = licenses.asl20; maintainers = with maintainers; [ schneefux filalex77 Frostman ]; diff --git a/pkgs/applications/misc/icesl/default.nix b/pkgs/applications/misc/icesl/default.nix index 7b642dffa50..b3e7e53774d 100644 --- a/pkgs/applications/misc/icesl/default.nix +++ b/pkgs/applications/misc/icesl/default.nix @@ -30,7 +30,7 @@ stdenv.mkDerivation rec { ''; meta = with lib; { - description = "IceSL is a GPU-accelerated procedural modeler and slicer for 3D printing."; + description = "GPU-accelerated procedural modeler and slicer for 3D printing"; homepage = "http://shapeforge.loria.fr/icesl/index.html"; license = licenses.inria-icesl; platforms = [ "i686-linux" "x86_64-linux" ]; diff --git a/pkgs/applications/misc/ipmiview/default.nix b/pkgs/applications/misc/ipmiview/default.nix index e46df5d59e0..851022899d9 100644 --- a/pkgs/applications/misc/ipmiview/default.nix +++ b/pkgs/applications/misc/ipmiview/default.nix @@ -13,12 +13,12 @@ stdenv.mkDerivation rec { pname = "IPMIView"; - version = "2.16.0"; - buildVersion = "190815"; + version = "2.17.0"; + buildVersion = "200505"; src = fetchurl { url = "https://www.supermicro.com/wftp/utility/IPMIView/Linux/IPMIView_${version}_build.${buildVersion}_bundleJRE_Linux_x64.tar.gz"; - sha256 = "0qw9zfnj0cyvab7ndamlw2y0gpczjhh1jkz8340kl42r2xmhkvpl"; + sha256 = "0ba0694krj2q77zwdn22v2qzjdy52a7ryhgc3m51s7p17ahigz97"; }; nativeBuildInputs = [ patchelf makeWrapper ]; @@ -32,6 +32,7 @@ stdenv.mkDerivation rec { patchelf --set-rpath "${stdenv.lib.makeLibraryPath [ libX11 libXext libXrender libXtst libXi ]}" ./jre/lib/amd64/libawt_xawt.so patchelf --set-rpath "${stdenv.lib.makeLibraryPath [ freetype ]}" ./jre/lib/amd64/libfontmanager.so patchelf --set-rpath "${gcc-unwrapped.lib}/lib" ./libiKVM64.so + patchelf --set-rpath "${gcc-unwrapped.lib}/lib" ./libiKVM_v11_64.so patchelf --set-rpath "${gcc.cc}/lib:$out/jre/lib/amd64/jli" --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" ./jre/bin/java patchelf --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" ./BMCSecurity/${stunnelBinary} ''; @@ -41,7 +42,7 @@ stdenv.mkDerivation rec { exec = "IPMIView"; desktopName = name; genericName = "Supermicro BMC manager"; - categories = "Network;Configuration"; + categories = "Network"; }; installPhase = '' @@ -60,7 +61,7 @@ stdenv.mkDerivation rec { --add-flags "-jar $out/IPMIView20.jar" \ --run 'WORK_DIR=''${XDG_DATA_HOME:-~/.local/share}/ipmiview mkdir -p $WORK_DIR - ln -snf '$out'/iKVM.jar '$out'/libiKVM* '$out'/libSharedLibrary* $WORK_DIR + ln -snf '$out'/iKVM.jar '$out'/iKVM_ssl.jar '$out'/libiKVM* '$out'/libSharedLibrary* $WORK_DIR cd $WORK_DIR' ''; diff --git a/pkgs/applications/misc/j4-dmenu-desktop/default.nix b/pkgs/applications/misc/j4-dmenu-desktop/default.nix index c20fa4ed9d9..2b1b093fd35 100644 --- a/pkgs/applications/misc/j4-dmenu-desktop/default.nix +++ b/pkgs/applications/misc/j4-dmenu-desktop/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "j4-dmenu-desktop"; - version = "2.17"; + version = "2.18"; src = fetchFromGitHub { owner = "enkore"; repo = pname; rev = "r${version}"; - sha256 = "0v23fimkn83dcm5p53y2ymhklff3kwppxhf75sm8xmswrzkixpgc"; + sha256 = "1gxpgifzy0hnpd0ymw3r32amzr32z3bgb90ldjzl438p6h1q0i26"; }; postPatch = '' diff --git a/pkgs/applications/misc/jotta-cli/default.nix b/pkgs/applications/misc/jotta-cli/default.nix index 70ca28b4678..a924bd181c0 100644 --- a/pkgs/applications/misc/jotta-cli/default.nix +++ b/pkgs/applications/misc/jotta-cli/default.nix @@ -5,10 +5,10 @@ let in stdenv.mkDerivation rec { pname = "jotta-cli"; - version = "0.6.24251"; + version = "0.7.33634"; src = fetchzip { url = "https://repo.jotta.us/archives/linux/${arch}/jotta-cli-${version}_linux_${arch}.tar.gz"; - sha256 = "0f26fg5fqpz0f6jxp72cj5f2kf76jah5iaqlqsl87250y0hm330g"; + sha256 = "0apbdk4fvmn52w9qyh6hvpk3k0sa810jvvndpsbysnlmi7gv5w62"; stripRoot = false; }; diff --git a/pkgs/applications/misc/kanboard/default.nix b/pkgs/applications/misc/kanboard/default.nix index 4f84420330d..ebe31b10c60 100644 --- a/pkgs/applications/misc/kanboard/default.nix +++ b/pkgs/applications/misc/kanboard/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "kanboard"; - version = "1.2.15"; + version = "1.2.16"; src = fetchFromGitHub { owner = "kanboard"; repo = "kanboard"; rev = "v${version}"; - sha256 = "0lib2qlc8a59i9dak0g1j5hymwbq9vhflp5srhcjislxypfvrizs"; + sha256 = "1nps7xcw1gp7kfdp13wyj2sprc8hn5iamdb0xj4202qygpzm63wq"; }; dontBuild = true; diff --git a/pkgs/applications/misc/keepassx/community.nix b/pkgs/applications/misc/keepassx/community.nix index f0131712b23..f718ab4d804 100644 --- a/pkgs/applications/misc/keepassx/community.nix +++ b/pkgs/applications/misc/keepassx/community.nix @@ -40,13 +40,13 @@ with stdenv.lib; stdenv.mkDerivation rec { pname = "keepassxc"; - version = "2.6.1"; + version = "2.6.2"; src = fetchFromGitHub { owner = "keepassxreboot"; repo = "keepassxc"; rev = version; - sha256 = "0wgn0glmcxaa670bpxh7n7abjlxcx4h1rl1169cmah0ddxnxnxpq"; + sha256 = "032dzywvwpclhsl3n1pq2m9gyxqpg0gkci6axbvbs7bn82wznc4h"; }; NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.cc.isClang [ diff --git a/pkgs/applications/misc/keeweb/default.nix b/pkgs/applications/misc/keeweb/default.nix new file mode 100644 index 00000000000..159f034b853 --- /dev/null +++ b/pkgs/applications/misc/keeweb/default.nix @@ -0,0 +1,65 @@ +{ stdenv, fetchurl, appimageTools, undmg, libsecret }: +let + inherit (stdenv.hostPlatform) system; + throwSystem = throw "Unsupported system: ${system}"; + + pname = "keeweb"; + version = "1.15.7"; + name = "${pname}-${version}"; + + suffix = { + x86_64-linux = "linux.AppImage"; + x86_64-darwin = "mac.dmg"; + }.${system} or throwSystem; + + src = fetchurl { + url = "https://github.com/keeweb/keeweb/releases/download/v${version}/KeeWeb-${version}.${suffix}"; + sha256 = { + x86_64-linux = "0cy0avl0m07xs523xm0rzsmifl28sv4rjb2jj3x492qmr2v64ckk"; + x86_64-darwin = "0r8c3zi0ibj0bb0gfc1axfn0y4qpjqfr0xpcxf810d65kaz6wic4"; + }.${system} or throwSystem; + }; + + appimageContents = appimageTools.extract { + inherit name src; + }; + + meta = with stdenv.lib; { + description = "Free cross-platform password manager compatible with KeePass"; + homepage = "https://keeweb.info/"; + license = licenses.mit; + maintainers = with maintainers; [ sikmir ]; + platforms = [ "x86_64-linux" "x86_64-darwin" ]; + }; + + linux = appimageTools.wrapType2 rec { + inherit name src meta; + + extraPkgs = pkgs: with pkgs; [ libsecret ]; + + extraInstallCommands = '' + mv $out/bin/{${name},${pname}} + install -Dm644 ${appimageContents}/keeweb.desktop -t $out/share/applications + install -Dm644 ${appimageContents}/keeweb.png -t $out/share/icons/hicolor/256x256/apps + install -Dm644 ${appimageContents}/usr/share/mime/keeweb.xml -t $out/share/mime + substituteInPlace $out/share/applications/keeweb.desktop \ + --replace 'Exec=AppRun' 'Exec=${pname}' + ''; + }; + + darwin = stdenv.mkDerivation { + inherit pname version src meta; + + nativeBuildInputs = [ undmg ]; + + sourceRoot = "KeeWeb.app"; + + installPhase = '' + mkdir -p $out/Applications/KeeWeb.app + cp -R . $out/Applications/KeeWeb.app + ''; + }; +in +if stdenv.isDarwin +then darwin +else linux diff --git a/pkgs/applications/misc/krusader/default.nix b/pkgs/applications/misc/krusader/default.nix index ab13c4989d9..585dfe3e04f 100644 --- a/pkgs/applications/misc/krusader/default.nix +++ b/pkgs/applications/misc/krusader/default.nix @@ -4,25 +4,23 @@ karchive, kconfig, kcrash, kguiaddons, kinit, kparts, kwindowsystem }: -let +mkDerivation rec { pname = "krusader"; version = "2.7.2"; -in mkDerivation rec { - pname = "krusader"; - inherit version; src = fetchurl { url = "mirror://kde/stable/${pname}/${version}/${pname}-${version}.tar.xz"; sha256 = "02b1jz5a7cjr13v6c7fczrhs1xmg1krnva5fxk8x2bf4nd1rm8s1"; }; + nativeBuildInputs = [ extra-cmake-modules kdoctools wrapGAppsHook ]; + + propagatedBuildInputs = [ karchive kconfig kcrash kguiaddons kinit kparts kwindowsystem ]; + meta = with lib; { description = "Norton/Total Commander clone for KDE"; - license = licenses.gpl2; homepage = "http://www.krusader.org"; + license = licenses.gpl2Only; maintainers = with maintainers; [ sander turion ]; }; - - nativeBuildInputs = [ extra-cmake-modules kdoctools wrapGAppsHook ]; - propagatedBuildInputs = [ karchive kconfig kcrash kguiaddons kinit kparts kwindowsystem ]; } diff --git a/pkgs/applications/misc/libosmocore/default.nix b/pkgs/applications/misc/libosmocore/default.nix index 2bd8bfa99bc..8b36d384e15 100644 --- a/pkgs/applications/misc/libosmocore/default.nix +++ b/pkgs/applications/misc/libosmocore/default.nix @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; meta = with stdenv.lib; { - description = "libosmocore"; + description = "Set of Osmocom core libraries"; homepage = "https://github.com/osmocom/libosmocore"; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/misc/mapproxy/default.nix b/pkgs/applications/misc/mapproxy/default.nix index 5676aef2360..41ae683548d 100644 --- a/pkgs/applications/misc/mapproxy/default.nix +++ b/pkgs/applications/misc/mapproxy/default.nix @@ -56,7 +56,7 @@ buildPythonApplication rec { # https://github.com/NixOS/nixpkgs/pull/56480 doCheck = false; meta = with lib; { - description = "MapProxy is an open source proxy for geospatial data"; + description = "Open source proxy for geospatial data"; homepage = "https://mapproxy.org/"; license = licenses.asl20; maintainers = with maintainers; [ rakesh4g ]; diff --git a/pkgs/applications/misc/marktext/default.nix b/pkgs/applications/misc/marktext/default.nix index e7600752ce2..83a7aabaef7 100644 --- a/pkgs/applications/misc/marktext/default.nix +++ b/pkgs/applications/misc/marktext/default.nix @@ -32,7 +32,7 @@ appimageTools.wrapType2 rec { extraInstallCommands = "mv $out/bin/${name} $out/bin/${pname}"; meta = with lib; { - description = "A simple and elegant markdown editor, available for Linux, macOS and Windows."; + description = "A simple and elegant markdown editor, available for Linux, macOS and Windows"; homepage = "https://marktext.app"; license = licenses.mit; maintainers = with maintainers; [ nh2 ]; diff --git a/pkgs/applications/misc/mediainfo-gui/default.nix b/pkgs/applications/misc/mediainfo-gui/default.nix index 96833bb25d3..b3e23f2245c 100644 --- a/pkgs/applications/misc/mediainfo-gui/default.nix +++ b/pkgs/applications/misc/mediainfo-gui/default.nix @@ -2,11 +2,11 @@ , desktop-file-utils, libSM, imagemagick }: stdenv.mkDerivation rec { - version = "20.08"; + version = "20.09"; pname = "mediainfo-gui"; src = fetchurl { url = "https://mediaarea.net/download/source/mediainfo/${version}/mediainfo_${version}.tar.xz"; - sha256 = "1baf2dj5s3g1x4ssqli1b2r1203syk42m09zhp36qcinmfixv11l"; + sha256 = "0rqg9z7s5bk7vlvjrs4gackzg7ib05a0dffi2ihsjf5a7kw7wcir"; }; nativeBuildInputs = [ autoreconfHook pkgconfig ]; diff --git a/pkgs/applications/misc/mediainfo/default.nix b/pkgs/applications/misc/mediainfo/default.nix index 09f20a9ba5d..0fd3826f4e5 100644 --- a/pkgs/applications/misc/mediainfo/default.nix +++ b/pkgs/applications/misc/mediainfo/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, autoreconfHook, pkgconfig, libzen, libmediainfo, zlib }: stdenv.mkDerivation rec { - version = "20.08"; + version = "20.09"; pname = "mediainfo"; src = fetchurl { url = "https://mediaarea.net/download/source/mediainfo/${version}/mediainfo_${version}.tar.xz"; - sha256 = "1baf2dj5s3g1x4ssqli1b2r1203syk42m09zhp36qcinmfixv11l"; + sha256 = "0rqg9z7s5bk7vlvjrs4gackzg7ib05a0dffi2ihsjf5a7kw7wcir"; }; nativeBuildInputs = [ autoreconfHook pkgconfig ]; diff --git a/pkgs/applications/misc/navi/default.nix b/pkgs/applications/misc/navi/default.nix index 1965a8ad5ec..7553b078ef6 100644 --- a/pkgs/applications/misc/navi/default.nix +++ b/pkgs/applications/misc/navi/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "navi"; - version = "2.12.0"; + version = "2.12.1"; src = fetchFromGitHub { owner = "denisidoro"; repo = "navi"; rev = "v${version}"; - sha256 = "0izmf4flwwn2h1wwpsnghb6rd494lj63hhsky1v9v6l1l641had4"; + sha256 = "1vrj8ad004h6jgmcb56f3f19s4xk6gvcpwysj78bxzgpa1998r3r"; }; - cargoSha256 = "19xv9kbmxbp84lj8ycifsdr7sw9vhwgla7cdmrvlhayiq5r04xd7"; + cargoSha256 = "0yifgcf2pfszzny523ax7pb9a5r3012nynbnhdqg0j1ia1pdymf3"; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/applications/misc/nwg-launchers/default.nix b/pkgs/applications/misc/nwg-launchers/default.nix index fc8cf3ee02e..d14d4d43e83 100644 --- a/pkgs/applications/misc/nwg-launchers/default.nix +++ b/pkgs/applications/misc/nwg-launchers/default.nix @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { pname = "nwg-launchers"; - version = "0.3.3"; + version = "0.4.0"; src = fetchFromGitHub { owner = "nwg-piotr"; repo = pname; rev = "v${version}"; - sha256 = "1p1bwsn7l4vp7y183735pgsfbh7dssdfn0wjzacl4s87arjdcgvb"; + sha256 = "0r0wj4w3jj3l56z1lx6ypkzz4fsgx4vzqbvs95661l8q362pndzw"; }; nativeBuildInputs = [ diff --git a/pkgs/applications/misc/obsidian/default.nix b/pkgs/applications/misc/obsidian/default.nix index 4e53657a747..8d6669917e7 100644 --- a/pkgs/applications/misc/obsidian/default.nix +++ b/pkgs/applications/misc/obsidian/default.nix @@ -30,12 +30,12 @@ let in stdenv.mkDerivation rec { pname = "obsidian"; - version = "0.9.1"; + version = "0.9.4"; src = fetchurl { url = "https://github.com/obsidianmd/obsidian-releases/releases/download/v${version}/obsidian-${version}.asar.gz"; - sha256 = "1skilcqfawvvyj9dnacsmlls55cqq6a4hzz9is165cwkyab185c5"; + sha256 = "0qahgm9gf4sap28wy7cxbf41h8zldplbwxnv8shyajbkxn108g5p"; }; nativeBuildInputs = [ makeWrapper graphicsmagick ]; @@ -65,7 +65,7 @@ in stdenv.mkDerivation rec { meta = with lib; { description = - "Obsidian is a powerful knowledge base that works on top of a local folder of plain text Markdown files"; + "A powerful knowledge base that works on top of a local folder of plain text Markdown files"; homepage = "https://obsidian.md"; license = licenses.obsidian; maintainers = with maintainers; [ conradmearns zaninime ]; diff --git a/pkgs/applications/misc/octoprint/plugins.nix b/pkgs/applications/misc/octoprint/plugins.nix index 514ac859c77..366b3866dfd 100644 --- a/pkgs/applications/misc/octoprint/plugins.nix +++ b/pkgs/applications/misc/octoprint/plugins.nix @@ -13,49 +13,111 @@ self: super: let in { inherit buildPlugin; - # Deprecated alias - m3d-fio = self.m33-fio; # added 2016-08-13 + abl-expert = buildPlugin rec { + pname = "ABL_Expert"; + version = "0.6"; - m33-fio = buildPlugin rec { - pname = "M33-Fio"; - version = "1.21"; - - src = fetchFromGitHub { - owner = "donovan6000"; - repo = "M33-Fio"; - rev = "V${version}"; - sha256 = "1la3611kkqn8yiwjn6cizc45ri8pnk6ckld1na4nk6mqk88jvjq7"; + src = fetchgit { + url = "https://framagit.org/razer/Octoprint_ABL_Expert/"; + rev = version; + sha256 = "0ij3rvdwya1sbymwm5swlh2j4jagb6fal945g88zrzh5xf26hzjh"; }; - patches = [ - ./m33-fio-one-library.patch - ]; + meta = with stdenv.lib; { + description = "Marlin auto bed leveling control, mesh correction, and z probe handling"; + homepage = "https://framagit.org/razer/Octoprint_ABL_Expert/"; + license = licenses.agpl3; + maintainers = with maintainers; [ WhittlesJr ]; + }; + }; - postPatch = '' - rm -rf octoprint_m33fio/static/libraries/* - ( - cd 'shared library source' - make - ) - ''; + bedlevelvisualizer = buildPlugin rec { + pname = "BedLevelVisualizer"; + version = "0.1.15"; + + src = fetchFromGitHub { + owner = "jneilliii"; + repo = "OctoPrint-${pname}"; + rev = version; + sha256 = "1bq39fnarnpk8phxfbpx6l4n9anf358z1cgid5r89nadmn2a0cny"; + }; + + propagatedBuildInputs = with super; [ numpy ]; meta = with stdenv.lib; { - description = "OctoPrint plugin for the Micro 3D printer"; - homepage = "https://github.com/donovan6000/M33-Fio"; - license = licenses.gpl3; - maintainers = with maintainers; [ abbradar ]; + description = "Displays 3D mesh of bed topography report"; + homepage = "https://github.com/jneilliii/OctoPrint-BedLevelVisualizer"; + license = licenses.agpl3; + maintainers = with maintainers; [ lovesegfault ]; + }; + }; + + curaenginelegacy = buildPlugin rec { + pname = "CuraEngineLegacy"; + version = "1.1.1"; + + src = fetchFromGitHub { + owner = "OctoPrint"; + repo = "OctoPrint-${pname}"; + rev = version; + sha256 = "1a7pxlmj1a7blkv97sn1k390pbjcxx2860011pbjcdnli74zpvv5"; + }; + + meta = with stdenv.lib; { + description = "Plugin for slicing via Cura Legacy from within OctoPrint"; + homepage = "https://github.com/OctoPrint/OctoPrint-CuraEngineLegacy"; + license = licenses.agpl3; + maintainers = with maintainers; [ gebner ]; + }; + }; + + displaylayerprogress = buildPlugin rec { + pname = "OctoPrint-DisplayLayerProgress"; + version = "1.24.0"; + + src = fetchFromGitHub { + owner = "OllisGit"; + repo = pname; + rev = version; + sha256 = "1lbivg3rcjzv8zqvp8n8gcaczxdm7gvd5ihjb6jq0fgf958lv59n"; + }; + + meta = with stdenv.lib; { + description = "OctoPrint-Plugin that sends the current progress of a print via M117 command"; + homepage = "https://github.com/OllisGit/OctoPrint-DisplayLayerProgress"; + license = licenses.agpl3; + maintainers = with maintainers; [ j0hax ]; + }; + }; + + gcodeeditor = buildPlugin rec { + pname = "GcodeEditor"; + version = "0.2.9"; + + src = fetchFromGitHub { + owner = "ieatacid"; + repo = "OctoPrint-${pname}"; + rev = version; + sha256 = "1yjj9lmxbzmzrn7gahw9lj7554fphalbjjp8ns0rr9py3rshwxkm"; + }; + + meta = with stdenv.lib; { + description = "Edit gcode on OctoPrint"; + homepage = "https://github.com/ieatacid/OctoPrint-GcodeEditor"; + license = licenses.agpl3; + maintainers = with maintainers; [ WhittlesJr ]; }; }; mqtt = buildPlugin rec { pname = "MQTT"; - version = "0.8.6"; + version = "0.8.7"; src = fetchFromGitHub { owner = "OctoPrint"; repo = "OctoPrint-MQTT"; rev = version; - sha256 = "0y1jnfplcy8mh3szrfbbvngl02j49cbdizglrfsry4fvqg50zjxd"; + sha256 = "0k82h7wafbcqdvk5wjw4dp9lydwszfj1lf8vvymwbqdn7pf5h0dy"; }; propagatedBuildInputs = with super; [ paho-mqtt ]; @@ -68,77 +130,30 @@ in { }; }; - titlestatus = buildPlugin rec { - pname = "TitleStatus"; - version = "0.0.4"; + printtimegenius = buildPlugin rec { + pname = "PrintTimeGenius"; + version = "2.2.6"; src = fetchFromGitHub { - owner = "MoonshineSG"; - repo = "OctoPrint-TitleStatus"; - rev = version; - sha256 = "1l78xrabn5hcly2mgxwi17nwgnp2s6jxi9iy4wnw8k8icv74ag7k"; - }; - - meta = with stdenv.lib; { - description = "Show printers status in window title"; - homepage = "https://github.com/MoonshineSG/OctoPrint-TitleStatus"; - license = licenses.agpl3; - maintainers = with maintainers; [ abbradar ]; - }; - }; - - stlviewer = buildPlugin rec { - pname = "STLViewer"; - version = "0.4.2"; - - src = fetchFromGitHub { - owner = "jneilliii"; - repo = "OctoPrint-STLViewer"; - rev = version; - sha256 = "0mkvh44fn2ch4z2avsdjwi1rp353ylmk9j5fln4x7rx8ph8y7g2b"; - }; - - meta = with stdenv.lib; { - description = "A simple stl viewer tab for OctoPrint"; - homepage = "https://github.com/jneilliii/Octoprint-STLViewer"; - license = licenses.agpl3; - maintainers = with maintainers; [ abbradar ]; - }; - }; - - curaenginelegacy = buildPlugin rec { - pname = "CuraEngineLegacy"; - version = "1.0.2"; - - src = fetchFromGitHub { - owner = "OctoPrint"; + owner = "eyal0"; repo = "OctoPrint-${pname}"; rev = version; - sha256 = "1cdb276wfyf3wcfj5g3migd6b6aqmkrxncrqjfcfx4j4k3xac965"; + sha256 = "04zfgd3x3lbriyzwhpqnwdcfdm19fsqgsb7l2ix5d0ssmqxwg2r6"; }; + preConfigure = '' + # PrintTimeGenius ships with marlin-calc binaries for multiple architectures + rm */analyzers/marlin-calc* + sed 's@"{}.{}".format(binary_base_name, machine)@"${pkgs.marlin-calc}/bin/marlin-calc"@' -i */analyzers/analyze_progress.py + ''; + + patches = [ + ./printtimegenius-logging.patch + ]; + meta = with stdenv.lib; { - description = "Plugin for slicing via Cura Legacy from within OctoPrint"; - homepage = "https://github.com/OctoPrint/OctoPrint-CuraEngineLegacy"; - license = licenses.agpl3; - maintainers = with maintainers; [ gebner ]; - }; - }; - - touchui = buildPlugin rec { - pname = "TouchUI"; - version = "0.3.14"; - - src = fetchFromGitHub { - owner = "BillyBlaze"; - repo = "OctoPrint-${pname}"; - rev = version; - sha256 = "033b9nk3kpnmjw9nggcaxy39hcgfviykcy2cx0j6m411agvmqbzf"; - }; - - meta = with stdenv.lib; { - description = "Touch friendly interface for a small TFT module or phone for OctoPrint"; - homepage = "https://github.com/BillyBlaze/OctoPrint-TouchUI"; + description = "Better print time estimation for OctoPrint"; + homepage = "https://github.com/eyal0/OctoPrint-PrintTimeGenius"; license = licenses.agpl3; maintainers = with maintainers; [ gebner ]; }; @@ -168,81 +183,15 @@ in { }; }; - printtimegenius = buildPlugin rec { - pname = "PrintTimeGenius"; - version = "2.2.1"; - - src = fetchFromGitHub { - owner = "eyal0"; - repo = "OctoPrint-${pname}"; - rev = version; - sha256 = "1dr93vbpxgxw3b1q4rwam8f4dmiwr5vnfr9796g6jx8xkpfzzy1h"; - }; - - preConfigure = '' - # PrintTimeGenius ships with marlin-calc binaries for multiple architectures - rm */analyzers/marlin-calc* - sed 's@"{}.{}".format(binary_base_name, machine)@"${pkgs.marlin-calc}/bin/marlin-calc"@' -i */analyzers/analyze_progress.py - ''; - - patches = [ - ./printtimegenius-logging.patch - ]; - - meta = with stdenv.lib; { - description = "Better print time estimation for OctoPrint"; - homepage = "https://github.com/eyal0/OctoPrint-PrintTimeGenius"; - license = licenses.agpl3; - maintainers = with maintainers; [ gebner ]; - }; - }; - - abl-expert = buildPlugin rec { - pname = "ABL_Expert"; - version = "2019-12-21"; - - src = fetchgit { - url = "https://framagit.org/razer/Octoprint_ABL_Expert/"; - rev = "f11fbe05088ad618bfd9d064ac3881faec223f33"; - sha256 = "026r4prkyvwzxag5pv36455q7s3gaig37nmr2nbvhwq3d2lbi5s4"; - }; - - meta = with stdenv.lib; { - description = "Marlin auto bed leveling control, mesh correction, and z probe handling"; - homepage = "https://framagit.org/razer/Octoprint_ABL_Expert/"; - license = licenses.agpl3; - maintainers = with maintainers; [ WhittlesJr ]; - }; - }; - - gcodeeditor = buildPlugin rec { - pname = "GcodeEditor"; - version = "0.2.6"; - - src = fetchFromGitHub { - owner = "ieatacid"; - repo = "OctoPrint-${pname}"; - rev = version; - sha256 = "0c6p78r3vd6ys3kld308pyln09zjbr9yif1ljvcx6wlml2i5l1vh"; - }; - - meta = with stdenv.lib; { - description = "Edit gcode on OctoPrint"; - homepage = "https://github.com/ieatacid/OctoPrint-GcodeEditor"; - license = licenses.agpl3; - maintainers = with maintainers; [ WhittlesJr ]; - }; - }; - simpleemergencystop = buildPlugin rec { pname = "SimpleEmergencyStop"; - version = "0.2.5"; + version = "1.0.3"; src = fetchFromGitHub { owner = "Sebclem"; repo = "OctoPrint-${pname}"; rev = version; - sha256 = "10wadv09wv2h96igvq3byw9hz1si82n3c7v5y0ii3j7hm2d06y8p"; + sha256 = "0hhh5grmn32abkix1b9fr1d0pcpdi2r066iypcxdxcza9qzwjiyi"; }; meta = with stdenv.lib; { @@ -253,22 +202,79 @@ in { }; }; - displaylayerprogress = buildPlugin rec { - pname = "OctoPrint-DisplayLayerProgress"; - version = "1.24.0"; + stlviewer = buildPlugin rec { + pname = "STLViewer"; + version = "0.4.2"; src = fetchFromGitHub { - owner = "OllisGit"; - repo = pname; + owner = "jneilliii"; + repo = "OctoPrint-STLViewer"; rev = version; - sha256 = "1lbivg3rcjzv8zqvp8n8gcaczxdm7gvd5ihjb6jq0fgf958lv59n"; + sha256 = "0mkvh44fn2ch4z2avsdjwi1rp353ylmk9j5fln4x7rx8ph8y7g2b"; }; meta = with stdenv.lib; { - description = "OctoPrint-Plugin that sends the current progress of a print via M117 command"; - homepage = "https://github.com/OllisGit/OctoPrint-DisplayLayerProgress"; + description = "A simple stl viewer tab for OctoPrint"; + homepage = "https://github.com/jneilliii/Octoprint-STLViewer"; license = licenses.agpl3; - maintainers = with maintainers; [ j0hax ]; + maintainers = with maintainers; [ abbradar ]; + }; + }; + + themeify = buildPlugin rec { + pname = "Themeify"; + version = "1.2.2"; + + src = fetchFromGitHub { + owner = "Birkbjo"; + repo = "Octoprint-${pname}"; + rev = "v${version}"; + sha256 = "0j1qs6kyh947npdy7pqda25fjkqinpas3sy0qyscqlxi558lhvx2"; + }; + + meta = with stdenv.lib; { + description = "Beautiful themes for OctoPrint"; + homepage = "https://github.com/birkbjo/OctoPrint-Themeify"; + license = licenses.agpl3; + maintainers = with maintainers; [ lovesegfault ]; + }; + }; + + titlestatus = buildPlugin rec { + pname = "TitleStatus"; + version = "0.0.5"; + + src = fetchFromGitHub { + owner = "MoonshineSG"; + repo = "OctoPrint-TitleStatus"; + rev = version; + sha256 = "10nxjrixg0i6n6x8ghc1ndshm25c97bvkcis5j9kmlkkzs36i2c6"; + }; + + meta = with stdenv.lib; { + description = "Show printers status in window title"; + homepage = "https://github.com/MoonshineSG/OctoPrint-TitleStatus"; + license = licenses.agpl3; + maintainers = with maintainers; [ abbradar ]; + }; + }; + + touchui = buildPlugin rec { + pname = "TouchUI"; + version = "0.3.16"; + + src = fetchFromGitHub { + owner = "BillyBlaze"; + repo = "OctoPrint-${pname}"; + rev = version; + sha256 = "1jlqjirc4ygl4k7jp93l2h6b18jap3mzz8sf2g61j9w0kgv9l365"; + }; + + meta = with stdenv.lib; { + description = "Touch friendly interface for a small TFT module or phone for OctoPrint"; + homepage = "https://github.com/BillyBlaze/OctoPrint-TouchUI"; + license = licenses.agpl3; + maintainers = with maintainers; [ gebner ]; }; }; @@ -293,13 +299,13 @@ in { octoprint-dashboard = buildPlugin rec { pname = "OctoPrint-Dashboard"; - version = "1.15.1"; + version = "1.15.2"; src = fetchFromGitHub { owner = "StefanCohen"; repo = pname; rev = version; - sha256 = "1psk069g8xdpgbzmna51dh978vrildh33dn7kbbi5y31ry5c3gx6"; + sha256 = "0p94jwd7kagh3sixhcrqmsgbay4aaf9l1pgyi2b45jym8pvld5n4"; }; meta = with stdenv.lib; { diff --git a/pkgs/applications/misc/ola/default.nix b/pkgs/applications/misc/ola/default.nix index 7682b56e4d6..a9f12d572c8 100644 --- a/pkgs/applications/misc/ola/default.nix +++ b/pkgs/applications/misc/ola/default.nix @@ -37,7 +37,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; meta = with stdenv.lib; { - description = "A framework for controlling entertainment lighting equipment."; + description = "A framework for controlling entertainment lighting equipment"; homepage = "https://www.openlighting.org/ola/"; maintainers = with maintainers; [ globin ]; license = with licenses; [ lgpl21 gpl2Plus ]; diff --git a/pkgs/applications/misc/opentx/default.nix b/pkgs/applications/misc/opentx/default.nix index a117ecc06a9..6bdcd0da1fc 100644 --- a/pkgs/applications/misc/opentx/default.nix +++ b/pkgs/applications/misc/opentx/default.nix @@ -6,13 +6,13 @@ mkDerivation rec { pname = "opentx"; - version = "2.3.9"; + version = "2.3.10"; src = fetchFromGitHub { owner = "opentx"; repo = "opentx"; rev = "release/${version}"; - sha256 = "0kh3jdy1pgvns8lrncf61ayaq0hmsv41j8xv4r4rf17zyvjl0qph"; + sha256 = "1pp3k1802gl1rji98clv17wj0619dliq821mpi4446lk22q692yq"; }; enableParallelBuilding = true; diff --git a/pkgs/applications/misc/orpie/default.nix b/pkgs/applications/misc/orpie/default.nix index d869b093955..2bf102fee25 100644 --- a/pkgs/applications/misc/orpie/default.nix +++ b/pkgs/applications/misc/orpie/default.nix @@ -1,21 +1,30 @@ -{ stdenv, fetchurl, ocamlPackages, ncurses, gsl }: +{ lib, fetchFromGitHub, ocamlPackages }: -stdenv.mkDerivation rec { +ocamlPackages.buildDunePackage rec { pname = "orpie"; - version = "1.5.2"; + version = "1.6.1"; - src = fetchurl { - url = "http://pessimization.com/software/orpie/${pname}-${version}.tar.gz"; - sha256 = "0v9xgpcf186ni55rkmx008msyszw0ypd6rd98hgwpih8yv3pymfy"; + src = fetchFromGitHub { + owner = "pelzlpj"; + repo = pname; + rev = "release-${version}"; + sha256 = "1rx2nl6cdv609pfymnbq53pi3ql5fr4kda8x10ycd9xq2gc4f21g"; }; - buildInputs = [ ncurses gsl ] ++ (with ocamlPackages; [ ocaml camlp4 ]); + preConfigure = '' + patchShebangs scripts + substituteInPlace scripts/compute_prefix \ + --replace '"topfind"' \ + '"${ocamlPackages.findlib}/lib/ocaml/${ocamlPackages.ocaml.version}/site-lib/topfind"' + export PREFIX=$out + ''; + + buildInputs = with ocamlPackages; [ curses camlp5 num gsl ]; meta = { - homepage = "https://github.com/pelzlpj/orpie"; - description = "A fullscreen RPN calculator for the console"; - license = stdenv.lib.licenses.gpl2; - platforms = stdenv.lib.platforms.all; - maintainers = with stdenv.lib.maintainers; [ obadz ]; + inherit (src.meta) homepage; + description = "A Curses-based RPN calculator"; + license = lib.licenses.gpl3Only; + maintainers = with lib.maintainers; [ obadz ]; }; } diff --git a/pkgs/applications/misc/osm2xmap/default.nix b/pkgs/applications/misc/osm2xmap/default.nix index e5838dc1bbe..1c893336498 100644 --- a/pkgs/applications/misc/osm2xmap/default.nix +++ b/pkgs/applications/misc/osm2xmap/default.nix @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://github.com/sembruk/osm2xmap"; - description = "Converter from OpenStreetMap data format to OpenOrienteering Mapper format."; + description = "Converter from OpenStreetMap data format to OpenOrienteering Mapper format"; license = licenses.gpl3; maintainers = [ maintainers.mpickering ]; platforms = with stdenv.lib.platforms; linux; diff --git a/pkgs/applications/misc/peaclock/default.nix b/pkgs/applications/misc/peaclock/default.nix new file mode 100644 index 00000000000..e824bbaf583 --- /dev/null +++ b/pkgs/applications/misc/peaclock/default.nix @@ -0,0 +1,24 @@ +{ stdenv, fetchFromGitHub, cmake, libpthreadstubs, icu }: + +stdenv.mkDerivation rec { + pname = "peaclock"; + version = "0.4.3"; + + src = fetchFromGitHub { + owner = "octobanana"; + repo = pname; + rev = version; + sha256 = "1582vgslhpgbvcd7ipgf1d1razrvgpq1f93q069yr2bbk6xn8i16"; + }; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ libpthreadstubs icu ]; + + meta = with stdenv.lib; { + description = "A clock, timer, and stopwatch for the terminal"; + homepage = "https://octobanana.com/software/peaclock"; + license = licenses.mit; + platforms = platforms.unix; + maintainers = with maintainers; [ djanatyn ]; + }; +} diff --git a/pkgs/applications/misc/plasma-applet-volumewin7mixer/default.nix b/pkgs/applications/misc/plasma-applet-volumewin7mixer/default.nix index 15dd7222b28..820048bdd6b 100644 --- a/pkgs/applications/misc/plasma-applet-volumewin7mixer/default.nix +++ b/pkgs/applications/misc/plasma-applet-volumewin7mixer/default.nix @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { buildInputs = [ plasma-framework kwindowsystem plasma-pa ]; meta = with stdenv.lib; { - description = "A fork of the default volume plasmoid with a Windows 7 theme (vertical sliders)."; + description = "A fork of the default volume plasmoid with a Windows 7 theme (vertical sliders)"; homepage = "https://github.com/Zren/plasma-applet-volumewin7mixer"; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/applications/misc/polar-bookshelf/default.nix b/pkgs/applications/misc/polar-bookshelf/default.nix index fc86b2e885d..cd309797aa3 100644 --- a/pkgs/applications/misc/polar-bookshelf/default.nix +++ b/pkgs/applications/misc/polar-bookshelf/default.nix @@ -1,29 +1,29 @@ { stdenv, lib, makeWrapper, fetchurl , dpkg, wrapGAppsHook, autoPatchelfHook -, gtk3, cairo, gnome2, atk, gdk-pixbuf, glib +, gtk3, cairo, pango, atk, gdk-pixbuf, glib , at-spi2-atk, dbus, libX11, libxcb, libXi , libXcursor, libXdamage, libXrandr, libXcomposite , libXext, libXfixes, libXrender, libXtst, libXScrnSaver , nss, nspr, alsaLib, cups, fontconfig, expat -, libudev0-shim, glibc, curl, openssl, libnghttp2, gnome3 }: +, libudev0-shim, glibc, curl, openssl, libnghttp2, gsettings-desktop-schemas }: stdenv.mkDerivation rec { pname = "polar-bookshelf"; - version = "1.13.10"; + version = "2.0.42"; # fetching a .deb because there's no easy way to package this Electron app src = fetchurl { - url = "https://github.com/burtonator/polar-bookshelf/releases/download/v${version}/polar-bookshelf-${version}-amd64.deb"; - sha256 = "1bxcyf6n2m5x1z8ic6kzskinyyc6lh6nj0bycbwc524n6ms5j99p"; + url = "https://github.com/burtonator/polar-bookshelf/releases/download/v${version}/polar-desktop-app-${version}-amd64.deb"; + hash = "sha256-JyO71wyE6b0iHAYs/6/WbG+OdUVUUPpJla+ZUzg0Gng="; }; buildInputs = [ - gnome3.gsettings_desktop_schemas + gsettings-desktop-schemas glib gtk3 cairo - gnome2.pango + pango atk gdk-pixbuf at-spi2-atk @@ -64,16 +64,15 @@ stdenv.mkDerivation rec { mkdir -p $out/bin mkdir -p $out/lib - mv opt/Polar\ Bookshelf/* $out/share/polar-bookshelf + mv opt/Polar/* $out/share/polar-bookshelf mv $out/share/polar-bookshelf/*.so $out/lib mv usr/share/* $out/share/ - ln -s $out/share/polar-bookshelf/polar-bookshelf $out/bin/polar-bookshelf + ln -s $out/share/polar-bookshelf/polar-desktop-app $out/bin/polar-desktop-app - # Correct desktop file `Exec` - substituteInPlace $out/share/applications/polar-bookshelf.desktop \ - --replace "/opt/Polar Bookshelf/polar-bookshelf" "$out/bin/polar-bookshelf" + substituteInPlace $out/share/applications/polar-desktop-app.desktop \ + --replace "/opt/Polar/polar-desktop-app" "$out/bin/polar-desktop-app" ''; preFixup = '' diff --git a/pkgs/applications/misc/prusa-slicer/super-slicer.nix b/pkgs/applications/misc/prusa-slicer/super-slicer.nix index e2ef645e70a..2bc59e855a0 100644 --- a/pkgs/applications/misc/prusa-slicer/super-slicer.nix +++ b/pkgs/applications/misc/prusa-slicer/super-slicer.nix @@ -3,7 +3,7 @@ }: let appname = "SuperSlicer"; - version = "2.2.53.1"; + version = "2.2.54.2"; pname = "super-slicer"; description = "PrusaSlicer fork with more features and faster development cycle"; override = super: { @@ -12,7 +12,7 @@ let src = fetchFromGitHub { owner = "supermerill"; repo = "SuperSlicer"; - sha256 = "sha256-CAhwmQ63N/XJYToTnIV84lNnjDGNbkmYPzNKNL/wVxs="; + sha256 = "sha256-ThmsxFXI1uReK+JwpHrIWzHpBdIOP77kDjv+QaK+Azk="; rev = version; }; @@ -23,8 +23,7 @@ let postInstall = '' mkdir -p "$out/share/pixmaps/" - # Change slic3r++ to SuperSlicer at the next release! - ln -s "$out/share/slic3r++/icons/Slic3r.png" "$out/share/pixmaps/${appname}.png" + ln -s "$out/share/SuperSlicer/icons/Slic3r.png" "$out/share/pixmaps/${appname}.png" mkdir -p "$out/share/applications" cp "$desktopItem"/share/applications/* "$out/share/applications/" ''; diff --git a/pkgs/applications/misc/qlcplus/default.nix b/pkgs/applications/misc/qlcplus/default.nix index 77a24413bdd..b47d8feecf7 100644 --- a/pkgs/applications/misc/qlcplus/default.nix +++ b/pkgs/applications/misc/qlcplus/default.nix @@ -36,7 +36,7 @@ mkDerivation rec { ''; meta = with stdenv.lib; { - description = "A free and cross-platform software to control DMX or analog lighting systems like moving heads, dimmers, scanners etc."; + description = "A free and cross-platform software to control DMX or analog lighting systems like moving heads, dimmers, scanners etc"; maintainers = [ maintainers.globin ]; license = licenses.asl20; platforms = platforms.all; diff --git a/pkgs/applications/misc/razergenie/default.nix b/pkgs/applications/misc/razergenie/default.nix index 9042ab38e75..ac0f373dc93 100644 --- a/pkgs/applications/misc/razergenie/default.nix +++ b/pkgs/applications/misc/razergenie/default.nix @@ -27,8 +27,8 @@ in stdenv.mkDerivation { ]; mesonFlags = [ - "-Denable_experimental=${if enableExperimental then "true" else "false"}" - "-Dinclude_matrix_discovery=${if includeMatrixDiscovery then "true" else "false"}" + "-Denable_experimental=${lib.boolToString enableExperimental}" + "-Dinclude_matrix_discovery=${lib.boolToString includeMatrixDiscovery}" ]; meta = with lib; { diff --git a/pkgs/applications/misc/rsibreak/default.nix b/pkgs/applications/misc/rsibreak/default.nix index 432cbfb9b69..9f765793dc9 100644 --- a/pkgs/applications/misc/rsibreak/default.nix +++ b/pkgs/applications/misc/rsibreak/default.nix @@ -20,7 +20,7 @@ in mkDerivation rec { propagatedBuildInputs = [ knotifyconfig kidletime kwindowsystem ktextwidgets kcrash ]; meta = with lib; { - description = "RSIBreak takes care of your health and regularly breaks your work to avoid repetitive strain injury (RSI)"; + description = "Takes care of your health and regularly breaks your work to avoid repetitive strain injury (RSI)"; license = licenses.gpl2; homepage = "https://www.kde.org/applications/utilities/rsibreak/"; maintainers = with maintainers; [ vandenoever ]; diff --git a/pkgs/applications/misc/sakura/default.nix b/pkgs/applications/misc/sakura/default.nix deleted file mode 100644 index 89a4cf25b8d..00000000000 --- a/pkgs/applications/misc/sakura/default.nix +++ /dev/null @@ -1,36 +0,0 @@ -{ stdenv, fetchurl, cmake, pkgconfig, gtk3, perl, vte, pcre2, glib , makeWrapper }: - -stdenv.mkDerivation rec { - pname = "sakura"; - version = "3.7.0"; - - src = fetchurl { - url = "https://launchpad.net/sakura/trunk/${version}/+download/${pname}-${version}.tar.gz"; - sha256 = "15gskj5yv5qs3cj4ps43735kfx2nzjlhq4dk9ghirl8lvhhxsm5m"; - }; - - nativeBuildInputs = [ cmake perl pkgconfig ]; - - buildInputs = [ makeWrapper gtk3 vte pcre2 glib ]; - - # Wrapper sets path to gsettings-schemata so sakura knows where to find colorchooser, fontchooser ... - postInstall = "wrapProgram $out/bin/sakura --suffix XDG_DATA_DIRS : ${gtk3}/share/gsettings-schemas/${gtk3.name}/"; - - meta = with stdenv.lib; { - description = "A terminal emulator based on GTK and VTE"; - homepage = "https://www.pleyades.net/david/projects/sakura"; - license = licenses.gpl2; - maintainers = with maintainers; [ astsmtl codyopel ]; - platforms = platforms.linux; - longDescription = '' - sakura is a terminal emulator based on GTK and VTE. It's a terminal - emulator with few dependencies, so you don't need a full GNOME desktop - installed to have a decent terminal emulator. Current terminal emulators - based on VTE are gnome-terminal, XFCE Terminal, TermIt and a small - sample program included in the vte sources. The differences between - sakura and the last one are that it uses a notebook to provide several - terminals in one window and adds a contextual menu with some basic - options. No more no less. - ''; - }; -} diff --git a/pkgs/applications/misc/ssw/default.nix b/pkgs/applications/misc/ssw/default.nix index 24b7953fe3d..7e1e4025810 100644 --- a/pkgs/applications/misc/ssw/default.nix +++ b/pkgs/applications/misc/ssw/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "ssw"; - version = "0.3"; + version = "0.6"; src = fetchurl { url = "https://alpha.gnu.org/gnu/ssw/spread-sheet-widget-${version}.tar.gz"; - sha256 = "1h93yyh2by6yrmkwqg38nd5knids05k5nqzcihc1hdwgzg3c4b8y"; + sha256 = "08ck9l697xg8vpya5h07raq837i4pqxjqzx30vhscq4xpps2b8kj"; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/applications/misc/syncthingtray/default.nix b/pkgs/applications/misc/syncthingtray/default.nix index c45ea27c425..bb4b3ac90ce 100644 --- a/pkgs/applications/misc/syncthingtray/default.nix +++ b/pkgs/applications/misc/syncthingtray/default.nix @@ -20,14 +20,14 @@ }: mkDerivation rec { - version = "0.11.0"; + version = "1.0.0"; pname = "syncthingtray"; src = fetchFromGitHub { owner = "Martchus"; repo = "syncthingtray"; rev = "v${version}"; - sha256 = "1lpjrij6y8l738hd7bfig0piglqinnqbadidzw9k0nm53bh4pqrr"; + sha256 = "sha256-mB23UOUrOfEmbFfVsAXyi3iod0NAfp/sl7Gkklqfmbo="; }; buildInputs = [ qtbase cpp-utilities qtutilities ] diff --git a/pkgs/applications/misc/teleprompter/default.nix b/pkgs/applications/misc/teleprompter/default.nix index 37b3f10329b..96265356ead 100644 --- a/pkgs/applications/misc/teleprompter/default.nix +++ b/pkgs/applications/misc/teleprompter/default.nix @@ -1,15 +1,15 @@ -{ lib, stdenv, fetchurl, electron_4, makeDesktopItem, makeWrapper, nodePackages, autoPatchelfHook}: +{ lib, stdenv, fetchurl, electron_10, makeDesktopItem, makeWrapper, nodePackages, autoPatchelfHook}: let - electron = electron_4; + electron = electron_10; in stdenv.mkDerivation rec { pname = "teleprompter"; - version = "2.3.4"; + version = "2.4.0"; src = fetchurl { - url = "mirror://sourceforge/teleprompter-imaginary-films/imaginary-${pname}-${version}-64bit.tar.gz"; - sha256 = "084ml2l3qg46bsazaapyxdx4zavvxp0j4ycsdpdwk3f94g9xb120"; + url = "https://github.com/ImaginarySense/Imaginary-Teleprompter-Electron/releases/download/${lib.versions.majorMinor version}/imaginary-teleprompter-${version}.tar.gz"; + sha256 = "bgdtK8l5d26avv1WUw9cfOgZrIL1q/a9890Ams4yidQ="; }; dontBuild = true; @@ -36,7 +36,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "The most complete, free, teleprompter app on the web"; - license = [ licenses.gpl3 ]; + license = [ licenses.gpl3Plus ]; homepage = "https://github.com/ImaginarySense/Teleprompter-Core"; platforms = platforms.linux; maintainers = with maintainers; [ Scriptkiddi ]; diff --git a/pkgs/applications/misc/tzupdate/default.nix b/pkgs/applications/misc/tzupdate/default.nix index 5c2b1312faf..8a18948da24 100644 --- a/pkgs/applications/misc/tzupdate/default.nix +++ b/pkgs/applications/misc/tzupdate/default.nix @@ -5,11 +5,11 @@ let in buildPythonApplication rec { pname = "tzupdate"; - version = "2.0.0"; + version = "2.1.0"; src = fetchPypi { inherit pname version; - sha256 = "12jvyza9pfhazkzq94nizacknnp32lf7kalrjmpz1z2bqqxhx0fm"; + sha256 = "5b55795c390e4ccc90e649c8cc387447daaf30a21d68f7196b49824cbcba8adc"; }; propagatedBuildInputs = [ requests ]; diff --git a/pkgs/applications/misc/upwork/default.nix b/pkgs/applications/misc/upwork/default.nix index 3757c8ce3bb..5d4247f3869 100644 --- a/pkgs/applications/misc/upwork/default.nix +++ b/pkgs/applications/misc/upwork/default.nix @@ -6,16 +6,16 @@ stdenv.mkDerivation rec { pname = "upwork"; - version = "5.3.3-883"; + version = "5.4.7.1"; src = fetchurl { - url = "https://updates-desktopapp.upwork.com/binaries/v5_3_3_883_1f817bc1fefd44e7/upwork_5.3.3.883_amd64.deb"; - sha256 = "072zns79w4h46bvbj23rvr8i12sf2l378ry0z3hchwcimkrph9wx"; + url = "https://updates-desktopapp.upwork.com/binaries/v5_4_7_1_81f361962c74427d/${pname}_5.4.7.1_amd64.deb"; + sha256 = "c443724d37bca942ca126b8b207846a5adb94a92ff9490370f2fe055feee347b"; }; dontWrapGApps = true; - nativeBuildInputs = [ + nativeBuildInputs = [ dpkg wrapGAppsHook autoPatchelfHook @@ -50,6 +50,6 @@ stdenv.mkDerivation rec { description = "Online freelancing platform desktop application for time tracking"; homepage = "https://www.upwork.com/ab/downloads/"; license = licenses.unfree; - maintainers = with maintainers; [ zakkor ]; + maintainers = with maintainers; [ zakkor wolfangaukang ]; }; -} \ No newline at end of file +} diff --git a/pkgs/applications/misc/visidata/default.nix b/pkgs/applications/misc/visidata/default.nix index 4cecf07f0fa..e23df96efed 100644 --- a/pkgs/applications/misc/visidata/default.nix +++ b/pkgs/applications/misc/visidata/default.nix @@ -11,16 +11,17 @@ , pandas , pyshp , setuptools +, withPcap ? true, dpkt ? null, dnslib ? null }: buildPythonApplication rec { pname = "visidata"; - version = "1.5.2"; + version = "2.0.1"; src = fetchFromGitHub { owner = "saulpw"; repo = "visidata"; rev = "v${version}"; - sha256 = "19gs8i6chrrwibz706gib5sixx1cjgfzh7v011kp3izcrn524mc0"; + sha256 = "sha256-AkGU9p00y+psBS/fL2YLyQYRSMOp1aPs21E9bpN9z0M="; }; propagatedBuildInputs = [ @@ -34,7 +35,7 @@ buildPythonApplication rec { pandas pyshp setuptools - ]; + ] ++ lib.optionals withPcap [ dpkt dnslib ]; doCheck = false; diff --git a/pkgs/applications/misc/wordnet/default.nix b/pkgs/applications/misc/wordnet/default.nix index 1f0414838ad..f681923978b 100644 --- a/pkgs/applications/misc/wordnet/default.nix +++ b/pkgs/applications/misc/wordnet/default.nix @@ -1,4 +1,4 @@ -{stdenv, fetchurl, tcl, tk, xlibsWrapper, makeWrapper}: +{ stdenv, fetchurl, tcl, tk, Cocoa, xlibsWrapper, makeWrapper }: stdenv.mkDerivation rec { version = "3.0"; @@ -8,7 +8,8 @@ stdenv.mkDerivation rec { sha256 = "08pgjvd2vvmqk3h641x63nxp7wqimb9r30889mkyfh2agc62sjbc"; }; - buildInputs = [tcl tk xlibsWrapper makeWrapper]; + buildInputs = [ tcl tk xlibsWrapper makeWrapper ] + ++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa ]; hardeningDisable = [ "format" ]; diff --git a/pkgs/applications/misc/xmenu/default.nix b/pkgs/applications/misc/xmenu/default.nix index 0904d1d048f..ecbb205c98e 100644 --- a/pkgs/applications/misc/xmenu/default.nix +++ b/pkgs/applications/misc/xmenu/default.nix @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { postPatch = "sed -i \"s:/usr/local:$out:\" config.mk"; meta = with stdenv.lib; { - description = "XMenu is a menu utility for X"; + description = "A menu utility for X"; homepage = "https://github.com/phillbush/xmenu"; license = licenses.publicDomain; maintainers = with maintainers; [ neonfuz ]; diff --git a/pkgs/applications/misc/xmrig/proxy.nix b/pkgs/applications/misc/xmrig/proxy.nix index 39cd5020409..a166ca3b50a 100644 --- a/pkgs/applications/misc/xmrig/proxy.nix +++ b/pkgs/applications/misc/xmrig/proxy.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "xmrig-proxy"; - version = "5.11.0"; + version = "6.3.0"; src = fetchFromGitHub { owner = "xmrig"; repo = "xmrig-proxy"; rev = "v${version}"; - sha256 = "0wwvsmanvcn0kbb5zqrj8786yg9rmdbink6rsnsm7ifak1iwvls9"; + sha256 = "1jh527bcl74018jd0qi32y4pcgmnbm21dyfhj4kg0j0ip15mx9j6"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/misc/xsuspender/default.nix b/pkgs/applications/misc/xsuspender/default.nix index 55ecd358c6c..02559691f4d 100644 --- a/pkgs/applications/misc/xsuspender/default.nix +++ b/pkgs/applications/misc/xsuspender/default.nix @@ -27,7 +27,7 @@ stdenv.mkDerivation rec { ''; meta = { - description = "Auto-suspend inactive X11 applications."; + description = "Auto-suspend inactive X11 applications"; homepage = "https://kernc.github.io/xsuspender/"; license = licenses.wtfpl; maintainers = with maintainers; [ offline ]; diff --git a/pkgs/applications/misc/yarssr/default.nix b/pkgs/applications/misc/yarssr/default.nix index c5489b8b981..805c708ea00 100644 --- a/pkgs/applications/misc/yarssr/default.nix +++ b/pkgs/applications/misc/yarssr/default.nix @@ -56,7 +56,7 @@ stdenv.mkDerivation { meta = with stdenv.lib; { homepage = "https://github.com/tsyrogit/zxcvbn-c"; - description = "A fork of Yarssr (a RSS reader for the GNOME Tray) from http://yarssr.sf.net with various fixes."; + description = "A fork of Yarssr (a RSS reader for the GNOME Tray) from http://yarssr.sf.net with various fixes"; license = licenses.gpl1; platforms = platforms.linux; maintainers = with maintainers; [ xurei ]; diff --git a/pkgs/applications/networking/Sylk/default.nix b/pkgs/applications/networking/Sylk/default.nix index 818ec5d2a6a..164e2b1ea79 100644 --- a/pkgs/applications/networking/Sylk/default.nix +++ b/pkgs/applications/networking/Sylk/default.nix @@ -2,7 +2,7 @@ let pname = "Sylk"; - version = "2.9.0"; + version = "2.9.1"; in appimageTools.wrapType2 rec { @@ -10,7 +10,7 @@ appimageTools.wrapType2 rec { src = fetchurl { url = "http://download.ag-projects.com/Sylk/Sylk-${version}-x86_64.AppImage"; - hash = "sha256-vhLZkU4MNAlITsJD+xYPDxeimGw6nHn/Rb5nu35uOfQ="; + hash = "sha256-Y1FR1tYZTxhMFn6NL578otitmOsngMJBPK/9cpCqE/Q="; }; profile = '' diff --git a/pkgs/applications/networking/browsers/amfora/default.nix b/pkgs/applications/networking/browsers/amfora/default.nix index 2772cb6d987..eaea5f12b87 100644 --- a/pkgs/applications/networking/browsers/amfora/default.nix +++ b/pkgs/applications/networking/browsers/amfora/default.nix @@ -13,6 +13,11 @@ buildGoModule rec { vendorSha256 = "10f3bh3r3jc1185r8r1ihg8rprdpl8qwg5b6wqwsda96ydkbpi2b"; + postInstall = '' + sed -i "s:amfora:$out/bin/amfora:" amfora.desktop + install -Dm644 amfora.desktop -t $out/share/applications + ''; + doCheck = false; meta = with lib; { diff --git a/pkgs/applications/networking/browsers/brave/default.nix b/pkgs/applications/networking/browsers/brave/default.nix index ceceffb8da0..fc4b5521b0d 100644 --- a/pkgs/applications/networking/browsers/brave/default.nix +++ b/pkgs/applications/networking/browsers/brave/default.nix @@ -86,11 +86,11 @@ in stdenv.mkDerivation rec { pname = "brave"; - version = "1.12.112"; + version = "1.15.76"; src = fetchurl { url = "https://github.com/brave/brave-browser/releases/download/v${version}/brave-browser_${version}_amd64.deb"; - sha256 = "0nvxmz1wrr6cfyhbnrfjsy9szbjmvjl6080pgkp25xa8rcql5gmb"; + sha256 = "3b054584c2272a9eeb9029f754cabaf4804db295fd0e6b84ead680b08af38d48"; }; dontConfigure = true; diff --git a/pkgs/applications/networking/browsers/chromium/README.md b/pkgs/applications/networking/browsers/chromium/README.md new file mode 100644 index 00000000000..5b7c9fe5504 --- /dev/null +++ b/pkgs/applications/networking/browsers/chromium/README.md @@ -0,0 +1,66 @@ +# Maintainers + +- TODO: We need more maintainers: + - https://github.com/NixOS/nixpkgs/issues/78450 + - If you just want to help out without becoming a maintainer: + - Look for open Nixpkgs issues or PRs related to Chromium + - Make your own PRs (but please try to make reviews as easy as possible) +- Primary maintainer (responsible for updating Chromium): @primeos +- Testers (test all stable channel updates) + - `nixos-unstable`: + - `x86_64`: @danielfullmer + - `aarch64`: @thefloweringash + - Stable channel: + - `x86_64`: @Frostman +- Other relevant packages: + - `chromiumBeta` and `chromiumDev`: For testing purposes (not build on Hydra) + - `google-chrome`, `google-chrome-beta`, `google-chrome-dev`: Updated via + Chromium's `upstream-info.json` + - `ungoogled-chromium`: Based on `chromium` (the expressions are regularly + copied over and patched accordingly) + +# Upstream links + +- Source code: https://source.chromium.org/chromium/chromium/src +- Bugs: https://bugs.chromium.org/p/chromium/issues/list +- Release updates: https://chromereleases.googleblog.com/ + - Available as Atom or RSS feed (filter for + "Stable Channel Update for Desktop") + - Channel overview: https://omahaproxy.appspot.com/ + - Release schedule: https://chromiumdash.appspot.com/schedule + +# Updating Chromium + +Simply run `./pkgs/applications/networking/browsers/chromium/update.py` to +update `upstream-info.json`. After updates it is important to test at least +`nixosTests.chromium` (or basic manual testing) and `google-chrome` (which +reuses `upstream-info.json`). + +## Backports + +All updates are considered security critical and should be ported to the stable +channel ASAP. When there is a new stable release the old one should receive +security updates for roughly one month. After that it is important to mark +Chromium as insecure (see 69e4ae56c4b for an example; it is important that the +tested job still succeeds and that all browsers that use `upstream-info.json` +are marked as insecure). + +## Major version updates + +Unfortunately, Chromium regularly breaks on major updates and might need +various patches. Either due to issues with the Nix build sandbox (e.g. we cannot +fetch dependencies via the network and do not use standard FHS paths) or due to +missing upstream fixes that need to be backported. + +Good sources for such patches and other hints: +- https://github.com/archlinux/svntogit-packages/tree/packages/chromium/trunk +- https://gitweb.gentoo.org/repo/gentoo.git/tree/www-client/chromium +- https://src.fedoraproject.org/rpms/chromium/tree/master + +If the build fails immediately due to unknown compiler flags this usually means +that a new major release of LLVM is required. + +## Beta and Dev channels + +Those channels are only used to test and fix builds in advance. They may be +broken at times and must not delay stable channel updates. diff --git a/pkgs/applications/networking/browsers/chromium/browser.nix b/pkgs/applications/networking/browsers/chromium/browser.nix index 3d87325984b..c44968a4126 100644 --- a/pkgs/applications/networking/browsers/chromium/browser.nix +++ b/pkgs/applications/networking/browsers/chromium/browser.nix @@ -77,18 +77,11 @@ mkChromiumDerivation (base: rec { of source code for Google Chrome (which has some additional features). ''; homepage = "https://www.chromium.org/"; - maintainers = with maintainers; [ bendlas thefloweringash primeos ]; - # Overview of the maintainer roles: - # nixos-unstable: - # - TODO: Need a new maintainer for x86_64 [0] - # - @thefloweringash: aarch64 - # - @primeos: Provisional maintainer (x86_64) - # Stable channel: - # - TODO (need someone to test backports [0]) - # [0]: https://github.com/NixOS/nixpkgs/issues/78450 + maintainers = with maintainers; [ primeos thefloweringash bendlas ]; # See README.md license = if enableWideVine then licenses.unfree else licenses.bsd3; platforms = platforms.linux; hydraPlatforms = if channel == "stable" then ["aarch64-linux" "x86_64-linux"] else []; - timeout = 172800; # 48 hours + timeout = 172800; # 48 hours (increased from the Hydra default of 10h) + broken = channel == "dev"; # Blocked on https://bugs.chromium.org/p/chromium/issues/detail?id=1141896 }; }) diff --git a/pkgs/applications/networking/browsers/chromium/common.nix b/pkgs/applications/networking/browsers/chromium/common.nix index 7de238dae8e..60aca90a95e 100644 --- a/pkgs/applications/networking/browsers/chromium/common.nix +++ b/pkgs/applications/networking/browsers/chromium/common.nix @@ -5,7 +5,7 @@ , libevent, expat, libjpeg, snappy , libpng, libcap , xdg_utils, yasm, nasm, minizip, libwebp -, libusb1, pciutils, nss, re2, zlib +, libusb1, pciutils, nss, re2 , python2Packages, perl, pkgconfig , nspr, systemd, kerberos @@ -46,8 +46,6 @@ buildFun: with stdenv.lib; -# see http://www.linuxfromscratch.org/blfs/view/cvs/xsoft/chromium.html - let jre = jre8; # TODO: remove override https://github.com/NixOS/nixpkgs/pull/89731 @@ -63,7 +61,7 @@ let mkGnFlags = let # Serialize Nix types into GN types according to this document: - # https://chromium.googlesource.com/chromium/src/+/master/tools/gn/docs/language.md + # https://source.chromium.org/gn/gn/+/master:docs/language.md mkGnString = value: "\"${escape ["\"" "$" "\\"] value}\""; sanitize = value: if value == true then "true" @@ -75,6 +73,7 @@ let toFlag = key: value: "${key}=${sanitize value}"; in attrs: concatStringsSep " " (attrValues (mapAttrs toFlag attrs)); + # https://source.chromium.org/chromium/chromium/src/+/master:build/linux/unbundle/replace_gn_files.py gnSystemLibraries = [ "ffmpeg" "flac" @@ -85,9 +84,6 @@ let "opus" "snappy" "zlib" - # "re2" # fails with linker errors - # "harfbuzz-ng" # in versions over 63 harfbuzz and freetype are being built together - # so we can't build with one from system and other from source ]; opusWithCustomModes = libopus.override { @@ -99,11 +95,9 @@ let libevent expat libjpeg snappy libpng libcap xdg_utils minizip libwebp - libusb1 re2 zlib + libusb1 re2 ffmpeg libxslt libxml2 nasm - # harfbuzz # in versions over 63 harfbuzz and freetype are being built together - # so we can't build with one from system and other from source ]; # build paths and release info @@ -132,6 +126,7 @@ let }; nativeBuildInputs = [ + llvmPackages.lldClang.bintools ninja which python2Packages.python perl pkgconfig python2Packages.ply python2Packages.jinja2 nodejs gnutar python2Packages.setuptools @@ -154,29 +149,33 @@ let ++ optionals useOzone [ libdrm wayland mesa_drivers libxkbcommon ]; patches = [ - ./patches/remove-webp-include-69.patch - ./patches/no-build-timestamps.patch - ./patches/widevine-79.patch - # Unfortunately, chromium regularly breaks on major updates and - # then needs various patches backported in order to be compiled with GCC. - # Good sources for such patches and other hints: - # - https://gitweb.gentoo.org/repo/gentoo.git/plain/www-client/chromium/ - # - https://git.archlinux.org/svntogit/packages.git/tree/trunk?h=packages/chromium - # - https://github.com/chromium/chromium/search?q=GCC&s=committer-date&type=Commits - # - # ++ optionals (channel == "dev") [ ( githubPatch "" "0000000000000000000000000000000000000000000000000000000000000000" ) ] + ./patches/no-build-timestamps.patch # Optional patch to use SOURCE_DATE_EPOCH in compute_build_timestamp.py (should be upstreamed) + ./patches/widevine-79.patch # For bundling Widevine (DRM), might be replaceable via bundle_widevine_cdm=true in gnFlags # ++ optional (versionRange "68" "72") ( githubPatch "" "0000000000000000000000000000000000000000000000000000000000000000" ) - ] ++ optionals (useVaapi) [ + ] ++ optionals (useVaapi && versionRange "86" "87") [ # Check for enable-accelerated-video-decode on Linux: (githubPatch "54deb9811ca9bd2327def5c05ba6987b8c7a0897" "11jvxjlkzz1hm0pvfyr88j7z3zbwzplyl5idkx92l2lzv4459c8d") ]; postPatch = '' + # remove unused third-party + for lib in ${toString gnSystemLibraries}; do + if [ -d "third_party/$lib" ]; then + find "third_party/$lib" -type f \ + \! -path "third_party/$lib/chromium/*" \ + \! -path "third_party/$lib/google/*" \ + \! -path "third_party/harfbuzz-ng/utils/hb_scoped.h" \ + \! -regex '.*\.\(gn\|gni\|isolate\)' \ + -delete + fi + done + # Required for patchShebangs (unsupported interpreter directive, basename: invalid option -- '*', etc.): - substituteInPlace native_client/SConstruct \ - --replace "#! -*- python -*-" "" - substituteInPlace third_party/harfbuzz-ng/src/src/update-unicode-tables.make \ - --replace "/usr/bin/env -S make -f" "/usr/bin/make -f" + substituteInPlace native_client/SConstruct --replace "#! -*- python -*-" "" + if [ -e third_party/harfbuzz-ng/src/src/update-unicode-tables.make ]; then + substituteInPlace third_party/harfbuzz-ng/src/src/update-unicode-tables.make \ + --replace "/usr/bin/env -S make -f" "/usr/bin/make -f" + fi # We want to be able to specify where the sandbox is via CHROME_DEVEL_SANDBOX substituteInPlace sandbox/linux/suid/client/setuid_sandbox_host.cc \ @@ -204,48 +203,26 @@ let sed -i -e '/libpci_loader.*Load/s!"\(libpci\.so\)!"${pciutils}/lib/\1!' \ gpu/config/gpu_info_collector_linux.cc - sed -i -re 's/([^:])\<(isnan *\()/\1std::\2/g' \ - chrome/browser/ui/webui/engagement/site_engagement_ui.cc - - sed -i -e '/#include/ { - i #include - :l; n; bl - }' gpu/config/gpu_control_list.cc - # Allow to put extensions into the system-path. sed -i -e 's,/usr,/run/current-system/sw,' chrome/common/chrome_paths.cc patchShebangs . # use our own nodejs mkdir -p third_party/node/linux/node-linux-x64/bin - ln -s $(which node) third_party/node/linux/node-linux-x64/bin/node + ln -s "$(command -v node)" third_party/node/linux/node-linux-x64/bin/node + + # Allow building against system libraries in official builds + sed -i 's/OFFICIAL_BUILD/GOOGLE_CHROME_BUILD/' tools/generate_shim_headers/generate_shim_headers.py - # remove unused third-party - # in third_party/crashpad third_party/zlib contains just a header-adapter - for lib in ${toString gnSystemLibraries}; do - find -type f -path "*third_party/$lib/*" \ - \! -path "*third_party/crashpad/crashpad/third_party/zlib/*" \ - \! -path "*third_party/$lib/chromium/*" \ - \! -path "*third_party/$lib/google/*" \ - \! -path "*base/third_party/icu/*" \ - \! -path "*base/third_party/libevent/*" \ - \! -regex '.*\.\(gn\|gni\|isolate\|py\)' \ - -delete - done '' + optionalString stdenv.isAarch64 '' substituteInPlace build/toolchain/linux/BUILD.gn \ --replace 'toolprefix = "aarch64-linux-gnu-"' 'toolprefix = ""' - '' + optionalString stdenv.cc.isClang '' - mkdir -p third_party/llvm-build/Release+Asserts/bin - ln -s ${stdenv.cc}/bin/clang third_party/llvm-build/Release+Asserts/bin/clang - ln -s ${stdenv.cc}/bin/clang++ third_party/llvm-build/Release+Asserts/bin/clang++ - ln -s ${llvmPackages.llvm}/bin/llvm-ar third_party/llvm-build/Release+Asserts/bin/llvm-ar ''; gnFlags = mkGnFlags ({ - use_lld = false; - use_gold = true; - gold_path = "${stdenv.cc}/bin"; + custom_toolchain = "//build/toolchain/linux/unbundle:default"; + host_toolchain = "//build/toolchain/linux/unbundle:default"; + is_official_build = true; is_debug = false; proprietary_codecs = false; @@ -304,8 +281,7 @@ let # This is to ensure expansion of $out. libExecPath="${libExecPath}" - python build/linux/unbundle/replace_gn_files.py \ - --system-libraries ${toString gnSystemLibraries} + python build/linux/unbundle/replace_gn_files.py --system-libraries ${toString gnSystemLibraries} ${gnChromium}/bin/gn gen --args=${escapeShellArg gnFlags} out/Release | tee gn-gen-outputs.txt # Fail if `gn gen` contains a WARNING. @@ -320,15 +296,8 @@ let NIX_CFLAGS_COMPILE = "-Wno-unknown-warning-option"; buildPhase = let - # Build paralelism: on Hydra the build was frequently running into memory - # exhaustion, and even other users might be running into similar issues. - # -j is halved to avoid memory problems, and -l is slightly increased - # so that the build gets slight preference before others - # (it will often be on "critical path" and at risk of timing out) buildCommand = target: '' - ninja -C "${buildPath}" \ - -j$(( ($NIX_BUILD_CORES+1) / 2 )) -l$(( $NIX_BUILD_CORES+1 )) \ - "${target}" + ninja -C "${buildPath}" -j$NIX_BUILD_CORES -l$NIX_BUILD_CORES "${target}" ( source chrome/installer/linux/common/installer.include PACKAGE=$packageName diff --git a/pkgs/applications/networking/browsers/chromium/default.nix b/pkgs/applications/networking/browsers/chromium/default.nix index e4bde512227..f83cb1d209d 100644 --- a/pkgs/applications/networking/browsers/chromium/default.nix +++ b/pkgs/applications/networking/browsers/chromium/default.nix @@ -14,7 +14,6 @@ , proprietaryCodecs ? true , enablePepperFlash ? false , enableWideVine ? false -, useVaapi ? false # Deprecated, use enableVaapi instead! , enableVaapi ? false # Disabled by default due to unofficial support , useOzone ? false , cupsSupport ? true @@ -47,6 +46,7 @@ let }); } // lib.optionalAttrs (lib.versionAtLeast upstream-info.version "87") { useOzone = true; # YAY: https://chromium-review.googlesource.com/c/chromium/src/+/2382834 \o/ + useVaapi = !stdenv.isAarch64; # TODO: Might be best to not set use_vaapi anymore (default is fine) gnChromium = gn.overrideAttrs (oldAttrs: { version = "2020-08-17"; src = fetchgit { @@ -147,13 +147,6 @@ let '' else browser; - optionalVaapiFlags = if useVaapi # TODO: Remove after 20.09: - then throw '' - Chromium's useVaapi was replaced by enableVaapi and you don't need to pass - "--ignore-gpu-blacklist" anymore (also no rebuilds are required anymore). - '' else lib.optionalString - (enableVaapi) - "--add-flags --enable-accelerated-video-decode"; in stdenv.mkDerivation { name = "chromium${suffix}-${version}"; inherit version; @@ -180,7 +173,7 @@ in stdenv.mkDerivation { eval makeWrapper "${browserBinary}" "$out/bin/chromium" \ --add-flags ${escapeShellArg (escapeShellArg commandLineArgs)} \ - ${optionalVaapiFlags} \ + ${lib.optionalString enableVaapi "--add-flags --enable-accelerated-video-decode"} \ ${concatMapStringsSep " " getWrapperFlags chromium.plugins.enabled} ed -v -s "$out/bin/chromium" << EOF diff --git a/pkgs/applications/networking/browsers/chromium/patches/remove-webp-include-69.patch b/pkgs/applications/networking/browsers/chromium/patches/remove-webp-include-69.patch deleted file mode 100644 index 07572cf7ee9..00000000000 --- a/pkgs/applications/networking/browsers/chromium/patches/remove-webp-include-69.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- a/third_party/blink/renderer/platform/image-encoders/image_encoder.cc -+++ b/third_party/blink/renderer/platform/image-encoders/image_encoder.cc -@@ -13,7 +13,7 @@ - - #include "jpeglib.h" // for JPEG_MAX_DIMENSION - --#include "third_party/libwebp/src/webp/encode.h" // for WEBP_MAX_DIMENSION -+#define WEBP_MAX_DIMENSION 16383 - - namespace blink { - diff --git a/pkgs/applications/networking/browsers/chromium/plugins.nix b/pkgs/applications/networking/browsers/chromium/plugins.nix index 530a4c8a4ae..c725f87d3a2 100644 --- a/pkgs/applications/networking/browsers/chromium/plugins.nix +++ b/pkgs/applications/networking/browsers/chromium/plugins.nix @@ -44,11 +44,11 @@ let flash = stdenv.mkDerivation rec { pname = "flashplayer-ppapi"; - version = "32.0.0.433"; + version = "32.0.0.445"; src = fetchzip { url = "https://fpdownload.adobe.com/pub/flashplayer/pdc/${version}/flash_player_ppapi_linux.x86_64.tar.gz"; - sha256 = "1wfwnmai6wnwi6cfxwqix6n471jjyl6nc7p67sa7cfqwg16b53kx"; + sha256 = "1r9vd210d2qp501q40pjx60mzah08rg0f8jk5rpp52ddajwggalv"; stripRoot = false; }; diff --git a/pkgs/applications/networking/browsers/chromium/upstream-info.json b/pkgs/applications/networking/browsers/chromium/upstream-info.json index 9ea7182b96d..5fded39c749 100644 --- a/pkgs/applications/networking/browsers/chromium/upstream-info.json +++ b/pkgs/applications/networking/browsers/chromium/upstream-info.json @@ -1,17 +1,17 @@ { "stable": { - "version": "86.0.4240.75", - "sha256": "1ddw4p9zfdzhi5hrd8x14k4w326znljzprnpfi2f917rlpnl2ynx", - "sha256bin64": "17isxkd80rccqim6izzl08vw4yr52qsk6djp1rmhhijzg9rsvghz" + "version": "86.0.4240.111", + "sha256": "05y7lwr89awkhvgmwkx3br9j4ap2aypg2wsc0nz8mi7kxc1dnyzj", + "sha256bin64": "10aqiiydw4i3jxnw8xxdgkgcqbfqc67n1fbrg40y54kg0v5dz8l6" }, "beta": { - "version": "86.0.4240.75", - "sha256": "1ddw4p9zfdzhi5hrd8x14k4w326znljzprnpfi2f917rlpnl2ynx", - "sha256bin64": "16snxdka5bkbvybx6x0dzgfbfaifv0jcc1dcny6vlqqp2fmb2v39" + "version": "87.0.4280.27", + "sha256": "0w0asxj7jlsw69cssfia8km4q9cx1c2mliks2rmhf4jk0hsghasm", + "sha256bin64": "1lsx4mhy8nachfb8c9f3mrx5nqw2bi046dqirb4lnv7y80jjjs1k" }, "dev": { - "version": "87.0.4278.0", - "sha256": "1ywmv4iwn2as7vk2n0pslnmr300fl5y809ynxiw5xqcx9j6i8w85", - "sha256bin64": "15dvwvk6l6n7l04085hr48hlvsijypasyk7d8iq3s6cxai3wx4cl" + "version": "88.0.4298.4", + "sha256": "0ka11gmpkyrmifajaxm66c16hrj3xakdvhjqg04slyp2sv0nlhrl", + "sha256bin64": "0768y31jqbl1znp7yp6mvl5j12xl1nwjkh2l8zdga81q0wz52hh6" } } diff --git a/pkgs/applications/networking/browsers/firefox-bin/mozilla.asc b/pkgs/applications/networking/browsers/firefox-bin/mozilla.asc new file mode 100644 index 00000000000..dc58eb8d56a Binary files /dev/null and b/pkgs/applications/networking/browsers/firefox-bin/mozilla.asc differ diff --git a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix index 57d1b54937e..0ae220a75f2 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix @@ -1,965 +1,965 @@ { - version = "81.0.2"; + version = "82.0"; sources = [ - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/ach/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/ach/firefox-82.0.tar.bz2"; locale = "ach"; arch = "linux-x86_64"; - sha256 = "2027512d879c1606c68adc4705936273ae7416125e0da24e31fb6381884c8bc3"; + sha256 = "beebf265e84b2bd961dcedaf82ed0cb6b89ef9ea37a0ec7ce1e6abfb78c44b23"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/af/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/af/firefox-82.0.tar.bz2"; locale = "af"; arch = "linux-x86_64"; - sha256 = "17afbd113ef486b0d584cdf40dfa602a0a489e6674e9e326b311f8adc0537951"; + sha256 = "c58bc5dab361ccc70a94268e1dcb444524145ab9f53a6aa3b186dd806ac111bf"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/an/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/an/firefox-82.0.tar.bz2"; locale = "an"; arch = "linux-x86_64"; - sha256 = "d3d6217063881911fb42aaceae4faf51c0a7d5fdad1c79c97238bb05a1498d25"; + sha256 = "75092675363111128ab808211747276c2cadae6a4ea5c8b28807acebb73cf733"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/ar/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/ar/firefox-82.0.tar.bz2"; locale = "ar"; arch = "linux-x86_64"; - sha256 = "d47411a35c37b4ade51e83b5e222b6b8e776fc1b7c4be025310a8fc34ce9c357"; + sha256 = "52adca504f18d6adfb02f346622a5b2b7e417cd6f243c566b79a01014efca53f"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/ast/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/ast/firefox-82.0.tar.bz2"; locale = "ast"; arch = "linux-x86_64"; - sha256 = "43ab6cc595bdb0d821c0a94c5e7d099f7be598c98dc96b1a3b5df5e7403ef7a3"; + sha256 = "fa4133422e8d1969c111e7d066f51710f3b53b7e5e3a88de5dd84b8e6faaea89"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/az/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/az/firefox-82.0.tar.bz2"; locale = "az"; arch = "linux-x86_64"; - sha256 = "b326bf5956c540bbfd6e03498cde99462b04a5833b56b9246fdfa48b49737056"; + sha256 = "0adc103451ac0d6671f62f3e1940d8d1fb5a6ed2544d015de9a02d75ffaca02c"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/be/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/be/firefox-82.0.tar.bz2"; locale = "be"; arch = "linux-x86_64"; - sha256 = "6bcb3e79504c685a440768eae2b07cdd5c6bae488c272e5990229ad942eb56dc"; + sha256 = "df27f72cc733bac439ed3dba89443286dfb2ca3af4efa33db161964c84293223"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/bg/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/bg/firefox-82.0.tar.bz2"; locale = "bg"; arch = "linux-x86_64"; - sha256 = "9182efef254942eb23ed1d5eb18babd6ea10f3c7998307e4f86847bce6141088"; + sha256 = "34190a84296246c3aa159067a9d575be628963c5c2e193512b8754524fa94503"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/bn/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/bn/firefox-82.0.tar.bz2"; locale = "bn"; arch = "linux-x86_64"; - sha256 = "a1619499d5d994dfc23af432a68722230a7342a06af35fa1af14ac441134a8ae"; + sha256 = "5eadf29b34dad12f373e675d349f093562b7e38a817f7faa76fcad273ababe2d"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/br/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/br/firefox-82.0.tar.bz2"; locale = "br"; arch = "linux-x86_64"; - sha256 = "ee6efdf5347fee8faaf007b13d442cd848b23d14ddfff0d089d4ac47b679aba9"; + sha256 = "53c6f9a4c5185ebf62c087dbe78163dcd46fe8bd3bf764a133a37116dbdf96a0"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/bs/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/bs/firefox-82.0.tar.bz2"; locale = "bs"; arch = "linux-x86_64"; - sha256 = "08f44244b8d29551af6ac20b8b3e046ea39d3f0bd69a43533e8c4779488fcb86"; + sha256 = "260419497fa79e176558f0a5ee43e1bf717ec4782742969bbaaea39cba04c908"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/ca-valencia/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/ca-valencia/firefox-82.0.tar.bz2"; locale = "ca-valencia"; arch = "linux-x86_64"; - sha256 = "b6c44812577fc2f295732aaf33ebb68f3b588bec85fe9d54310bebb80ae821e3"; + sha256 = "b2de05d651de2096559b9c40c75212baeff759632aabe70fa9c82283b5ae02d2"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/ca/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/ca/firefox-82.0.tar.bz2"; locale = "ca"; arch = "linux-x86_64"; - sha256 = "6ef86ef2e82bb3ff74b68239681b804fdb8f5f3e89894b9e0860973d7cc85ea8"; + sha256 = "bb3ce2ca6c6d536bdabab8ad549623aaf287a6b7dc708a7888961d8aa72271a1"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/cak/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/cak/firefox-82.0.tar.bz2"; locale = "cak"; arch = "linux-x86_64"; - sha256 = "b468e0390aac3751a25cb8d2d130242a39e58c50dcdac2e8eb61e5a421d15bf2"; + sha256 = "8c918ef50f2e1db8e5e51420e6dcf6fad0a4f3f4e7054b9f3292a98ee804cfe9"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/cs/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/cs/firefox-82.0.tar.bz2"; locale = "cs"; arch = "linux-x86_64"; - sha256 = "7d8a3069e54914cf46b990377a0b192969aadfd214e9fd01e0d6bad711b4ea03"; + sha256 = "b8a4557ce44275e471e028c7fdac7259914cea670116991dfffb3a85fd111149"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/cy/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/cy/firefox-82.0.tar.bz2"; locale = "cy"; arch = "linux-x86_64"; - sha256 = "c0b8ccb2471594187ef865cea477c364299314672dbd332f795044e988545c52"; + sha256 = "45f3438b6218655c26ef846923af9860b5957f0cd1f3f0407a2aa80c20b54519"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/da/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/da/firefox-82.0.tar.bz2"; locale = "da"; arch = "linux-x86_64"; - sha256 = "c7620a8177276045ddaecd4ee6223ce06f8dea52f6a1f530c3e69d8d90e2a794"; + sha256 = "d015f6abed9728bdf06b922ba9edae3272950dc795cef120179ed21ed633b136"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/de/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/de/firefox-82.0.tar.bz2"; locale = "de"; arch = "linux-x86_64"; - sha256 = "6ef5723267a6e5668b49111756b6b3f1435f765c4a69fe84e5e5a9a91160188c"; + sha256 = "29748fa89f1b0995f23cddec986379c9ddd89fc158d56591288eedd3345e52ef"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/dsb/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/dsb/firefox-82.0.tar.bz2"; locale = "dsb"; arch = "linux-x86_64"; - sha256 = "d92e94a8a8a9b91b273b1be46690b9bf1100d05dc66be4a7148bcd1561079ffe"; + sha256 = "cae1494636a96530e01c58d8a8914c2f2866eee16f96356dc89dd4cf98b67fe6"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/el/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/el/firefox-82.0.tar.bz2"; locale = "el"; arch = "linux-x86_64"; - sha256 = "5db2868fde7014b576f77afe3a2a003bc877ef1cb223f152f6a938e56e1d56c9"; + sha256 = "28b09aed5ae0f9d7454d4e43955675535b7bcaf6a79d157aec1f3dc3fd6b922f"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/en-CA/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/en-CA/firefox-82.0.tar.bz2"; locale = "en-CA"; arch = "linux-x86_64"; - sha256 = "38d64b0a790ce2d8b64ea2b4a4968010c265fbf138ab22e78abb332204b78808"; + sha256 = "d9fd41938262b2b43f91898b6509e11095ff851e249f066de4728d1c53edc1e2"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/en-GB/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/en-GB/firefox-82.0.tar.bz2"; locale = "en-GB"; arch = "linux-x86_64"; - sha256 = "a87201313bcf05887515ef8895fdf12824be3f60202e33cd033da4e68f3f88be"; + sha256 = "45385629837dca1afd1d9e6cf24aa3a656c180350e86740a47896cea612af934"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-x86_64/en-US/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-x86_64/en-US/firefox-82.0.tar.bz2"; 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locale = "rm"; arch = "linux-i686"; - sha256 = "25796de47983159ba7f95847b66d6f382492f8b00f0e7bc16476712daada071f"; + sha256 = "a825c9319954997f285370b4f13e20fe1b0eda62621b71570b2d7606e5a5668c"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/ro/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/ro/firefox-82.0.tar.bz2"; locale = "ro"; arch = "linux-i686"; - sha256 = "6a454aa97f70e4ec91755caad76fc4f21f13d66faf26190404cc2a2ef8b837a1"; + sha256 = "df1de4c7dd186bd8b6558c6c4e902a1721ad3f73a40dd5163b82e98323931436"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/ru/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/ru/firefox-82.0.tar.bz2"; locale = "ru"; arch = "linux-i686"; - sha256 = "2e1f6b8ea95b4a98d9880bdb1f61ccad792e4fe3517dd780a52c5eed5b72adad"; + sha256 = "4c02fa376103c6fb69f2610045a5f922a6a305b11f92899e9d7f42725cfe9ad2"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/si/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/si/firefox-82.0.tar.bz2"; locale = "si"; arch = "linux-i686"; - sha256 = "c75763f6d6bca7f86be911039a9efd686d8fb011bfcccdac056e2a12243947f4"; + sha256 = "bc429d437ede468610dfb4f807d7107a6a0f60b32c425d61cf13cbfb4f1aceed"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/sk/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/sk/firefox-82.0.tar.bz2"; locale = "sk"; arch = "linux-i686"; - sha256 = "0968c66cde907b5e61ce70b1dc1244687069dfde28921a9043d0ccd55182aca7"; + sha256 = "6e6620e108c4e6c0acafec1921ec4d99912dd0ca4d36d62cc5bef6127ca04c33"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/sl/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/sl/firefox-82.0.tar.bz2"; locale = "sl"; arch = "linux-i686"; - sha256 = "cc585166dbbf6baf0dbe2b9ceda53671738436c43d2af55a0672c37eb942add6"; + sha256 = "7aa6392e83496ebfba7b5ea4576aab2d28088c88558d88af74a588954bc5af20"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/son/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/son/firefox-82.0.tar.bz2"; locale = "son"; arch = "linux-i686"; - sha256 = "911d5fe53e9aa4937f3a697ee1e57b53b87e1ed92a6231086653e03ffd864411"; + sha256 = "3134725ede0ba297dc895b3682cc6ecf73931c0779a0fc979166f2ed652b6d4e"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/sq/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/sq/firefox-82.0.tar.bz2"; locale = "sq"; arch = "linux-i686"; - sha256 = "d7ba2423fc741867add3d76c5b13768f0415f001f8f947c664610c06cd7736b2"; + sha256 = "33d3a6bcdcfb199360770c677849e064d3727f3629b34f9913faccd5f173c6bb"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/sr/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/sr/firefox-82.0.tar.bz2"; locale = "sr"; arch = "linux-i686"; - sha256 = "456e1cdc8d8c0a0fdf39730ff2a812f8bd7a2b61d94312494fadf1d4957bd593"; + sha256 = "b9ea179cc648bfb7688e5b21a0a5d128bd0247171b9e9114459a4ed7fe352281"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/sv-SE/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/sv-SE/firefox-82.0.tar.bz2"; locale = "sv-SE"; arch = "linux-i686"; - sha256 = "040f71f4cf9ca2d01c1c0dfe4a44389f41da0e2a595a827fe88e36a0013cc979"; + sha256 = "18227f53b7317262270f4ed973b080649d3011ea52ab434d56a09e91d750c8e3"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/ta/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/ta/firefox-82.0.tar.bz2"; locale = "ta"; arch = "linux-i686"; - sha256 = "488cf25e731096c5ee1458f11adbe0c4b3cf3a665437827f2b27d79e5ca805dd"; + sha256 = "8c70c66802d6966e04462f934bfe16c94007209b4b6ecccbfe1cc044cd3c19d0"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/te/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/te/firefox-82.0.tar.bz2"; locale = "te"; arch = "linux-i686"; - sha256 = "c79f19c5c2ec4e48a257bb98d4121fd95f284f97f7af4212adbb2663964b1c53"; + sha256 = "c36cd994a88688e3af5360f24bdc6a69960723bc2dd196f3d42ab8d6099abbfb"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/th/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/th/firefox-82.0.tar.bz2"; locale = "th"; arch = "linux-i686"; - sha256 = "4e27f5646e4d62ad70ebfc93a9603c3527ef570307ec4a8408f03bc9f72c662a"; + sha256 = "2ded98d2d5957ee42c665a1789ae4fbc549af60a08adf1e51baf7022db5f03cb"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/tl/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/tl/firefox-82.0.tar.bz2"; locale = "tl"; arch = "linux-i686"; - sha256 = "71c81c3b5f77364367aad6e004d4d455b01e7d3bbb21cd9c3e5fd7dfdb661f36"; + sha256 = "14135d1ae961084d7979bb3ee13fa50bb2f59d8ea9fe18400084aedcd6ca5388"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/tr/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/tr/firefox-82.0.tar.bz2"; locale = "tr"; arch = "linux-i686"; - sha256 = "3257a340958e658be49f4f2982e8feb8e932532a251e98b236406d370d873275"; + sha256 = "4ac2f0a8729427e508f9aaf3c6606145b84ea47009724a1d07c3182fbeb4678b"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/trs/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/trs/firefox-82.0.tar.bz2"; locale = "trs"; arch = "linux-i686"; - sha256 = "914af864af7d51d31abdbec4a1112828d51ffd83ee6a39bbf9f5ec0223ae4ef9"; + sha256 = "c7bf44d74cead7b7a5d44bb16331a113d8fb630c0bfa9740045ecc5d6858a099"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/uk/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/uk/firefox-82.0.tar.bz2"; locale = "uk"; arch = "linux-i686"; - sha256 = "7cff7f0f3d6b586c19d9370e78e6e0ab50a99af62b40de7a44318f5ca929db59"; + sha256 = "7a796554c241f21c16573f20b2b1907a4f7af4cccf441739b9826e2140f640cf"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/ur/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/ur/firefox-82.0.tar.bz2"; locale = "ur"; arch = "linux-i686"; - sha256 = "b1d17f6434fb7b44576c29e6d1b2c2b3944e27fc8b3aaecf9739c4a653ecd865"; + sha256 = "8d5bdda725bad1479c32a18504fb584ac290f94e994b4c00a0686bb09bfb6913"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/uz/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/uz/firefox-82.0.tar.bz2"; locale = "uz"; arch = "linux-i686"; - sha256 = "3cdd2f764c88fe4a85bd32728f4ff47eb452e14c506f38f891added89fd45a0a"; + sha256 = "699bf3bd19bc7f4f213791ef2bd7ce8db0693928be611b952c6c8b34861efae1"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/vi/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/vi/firefox-82.0.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha256 = "ce2a5cac99bb86adc793ac6c980432a3c1c1bd6150df856088b0cc49cd8b618c"; + sha256 = "731e97ab6e96cf3da549b1cd954fbd4c48112ba12792bf1b94f9ce5628505c47"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/xh/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/xh/firefox-82.0.tar.bz2"; locale = "xh"; arch = "linux-i686"; - sha256 = "a943db84bba8823112738999cb31dafd20d076de62bc44ac9e2b8f2a793ab283"; + sha256 = "0078f3303b80aa63b1f664c49255077632729a5461b74a875e8cfb0ce3a23bb9"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/zh-CN/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/zh-CN/firefox-82.0.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha256 = "23a2662b2844e45cacb038f8fcc1a2647d1b03df6d7ff346c8600c08f6772dcb"; + sha256 = "fe9cb3a43e12c64aa12e40e8f52651e1c4ef09a52bbb51a3492acf8a535172c1"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/81.0.2/linux-i686/zh-TW/firefox-81.0.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/82.0/linux-i686/zh-TW/firefox-82.0.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha256 = "dfb5d0725fe50346dc551c407d38574a696e8f10373de73d47252ec283d1b256"; + sha256 = "020b7887120b134c127d444b59a5ce052fffd7653fffacaec9b0e4902e86158a"; } ]; } diff --git a/pkgs/applications/networking/browsers/firefox-bin/update.nix b/pkgs/applications/networking/browsers/firefox-bin/update.nix index 03815a70332..018bf04cb57 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/update.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/update.nix @@ -23,8 +23,10 @@ in writeScript "update-${name}" '' set -eux pushd ${basePath} + HOME=`mktemp -d` export GNUPGHOME=`mktemp -d` - gpg --keyserver hkps://gpg.mozilla.org --recv-keys 14F26682D0916CDD81E37B6D61B7B526D98F0353 + + gpg --import ${./mozilla.asc} tmpfile=`mktemp` url=${baseUrl} @@ -53,7 +55,7 @@ in writeScript "update-${name}" '' # this is a list of sha256 and tarballs for both arches # Upstream files contains python repr strings like b'somehash', hence the sed dance - shasums=`cat $HOME/shasums | sed -E s/"b'([a-f0-9]{64})'?(.*)"/'\1\2'/` + shasums=`cat $HOME/shasums | sed -E s/"b'([a-f0-9]{64})'?(.*)"/'\1\2'/ | grep tar.bz2` cat > $tmpfile < !waylandSupport || !webrtcSupport -> throw "pipewireSupport requires both wayland and webrtc support."; +assert ltoSupport -> stdenv.isDarwin -> throw "LTO is broken on Darwin (see PR#19312)."; let flag = tf: x: [(if tf then "--enable-${x}" else "--disable-${x}")]; @@ -87,9 +91,20 @@ let then "/Applications/${binaryNameCapitalized}.app/Contents/MacOS" else "/bin"; + # Darwin's stdenv provides the default llvmPackages version, match that since + # clang LTO on Darwin is broken so the stdenv is not being changed. + llvmPackages = if stdenv.isDarwin + then buildPackages.llvmPackages + else buildPackages.llvmPackages_10; + + # When LTO for Darwin is fixed, the following will need updating as lld + # doesn't work on it. For now it is fine since ltoSupport implies no Darwin. + buildStdenv = if ltoSupport + then overrideCC stdenv llvmPackages.lldClang + else stdenv; in -stdenv.mkDerivation ({ +buildStdenv.mkDerivation ({ name = "${pname}-unwrapped-${ffversion}"; version = ffversion; @@ -131,11 +146,18 @@ stdenv.mkDerivation ({ ++ lib.optional pulseaudioSupport libpulseaudio # only headers are needed ++ lib.optional gtk3Support gtk3 ++ lib.optional gssSupport kerberos + ++ lib.optional ltoSupport llvmPackages.libunwind ++ lib.optionals waylandSupport [ libxkbcommon ] ++ lib.optionals pipewireSupport [ pipewire ] - ++ lib.optionals stdenv.isDarwin [ CoreMedia ExceptionHandling Kerberos - AVFoundation MediaToolbox CoreLocation - Foundation libobjc AddressBook cups ]; + ++ lib.optionals (lib.versionAtLeast ffversion "82") [ gnum4 ] + ++ lib.optionals buildStdenv.isDarwin [ CoreMedia ExceptionHandling Kerberos + AVFoundation MediaToolbox CoreLocation + Foundation libobjc AddressBook cups ]; + + NIX_LDFLAGS = lib.optionalString ltoSupport '' + -rpath ${placeholder "out"}/lib/${binaryName} + -rpath ${llvmPackages.libunwind.out}/lib + ''; NIX_CFLAGS_COMPILE = toString [ "-I${glib.dev}/include/gio-unix-2.0" @@ -179,7 +201,7 @@ stdenv.mkDerivation ({ which ] ++ lib.optional gtk3Support wrapGAppsHook - ++ lib.optionals stdenv.isDarwin [ xcbuild rsync ] + ++ lib.optionals buildStdenv.isDarwin [ xcbuild rsync ] ++ extraNativeBuildInputs; preConfigure = '' @@ -197,12 +219,12 @@ stdenv.mkDerivation ({ # included we need to look in a few places. # TODO: generalize this process for other use-cases. - BINDGEN_CFLAGS="$(< ${stdenv.cc}/nix-support/libc-crt1-cflags) \ - $(< ${stdenv.cc}/nix-support/libc-cflags) \ - $(< ${stdenv.cc}/nix-support/cc-cflags) \ - $(< ${stdenv.cc}/nix-support/libcxx-cxxflags) \ - ${lib.optionalString stdenv.cc.isClang "-idirafter ${stdenv.cc.cc}/lib/clang/${lib.getVersion stdenv.cc.cc}/include"} \ - ${lib.optionalString stdenv.cc.isGNU "-isystem ${stdenv.cc.cc}/include/c++/${lib.getVersion stdenv.cc.cc} -isystem ${stdenv.cc.cc}/include/c++/${lib.getVersion stdenv.cc.cc}/${stdenv.hostPlatform.config}"} \ + BINDGEN_CFLAGS="$(< ${buildStdenv.cc}/nix-support/libc-crt1-cflags) \ + $(< ${buildStdenv.cc}/nix-support/libc-cflags) \ + $(< ${buildStdenv.cc}/nix-support/cc-cflags) \ + $(< ${buildStdenv.cc}/nix-support/libcxx-cxxflags) \ + ${lib.optionalString buildStdenv.cc.isClang "-idirafter ${buildStdenv.cc.cc}/lib/clang/${lib.getVersion buildStdenv.cc.cc}/include"} \ + ${lib.optionalString buildStdenv.cc.isGNU "-isystem ${buildStdenv.cc.cc}/include/c++/${lib.getVersion buildStdenv.cc.cc} -isystem ${buildStdenv.cc.cc}/include/c++/${lib.getVersion buildStdenv.cc.cc}/${buildStdenv.hostPlatform.config}"} \ $NIX_CFLAGS_COMPILE" echo "ac_add_options BINDGEN_CFLAGS='$BINDGEN_CFLAGS'" >> $MOZCONFIG @@ -236,11 +258,20 @@ stdenv.mkDerivation ({ "--enable-jemalloc" "--enable-default-toolkit=${default-toolkit}" "--with-libclang-path=${llvmPackages.libclang}/lib" - "--with-clang-path=${llvmPackages.clang}/bin/clang" "--with-system-nspr" "--with-system-nss" ] - ++ lib.optional (stdenv.isDarwin) "--disable-xcode-checks" + ++ lib.optional (buildStdenv.isDarwin) "--disable-xcode-checks" + ++ lib.optional (!ltoSupport) "--with-clang-path=${llvmPackages.clang}/bin/clang" + # LTO is done using clang and lld on Linux. + # Darwin needs to use the default linker as lld is not supported (yet?): + # https://bugzilla.mozilla.org/show_bug.cgi?id=1538724 + # elf-hack is broken when using clang+lld: + # https://bugzilla.mozilla.org/show_bug.cgi?id=1482204 + ++ lib.optionals ltoSupport [ + "--enable-lto" + "--disable-elf-hack" + ] ++ lib.optional (ltoSupport && !buildStdenv.isDarwin) "--enable-linker=lld" ++ flag alsaSupport "alsa" ++ flag pulseaudioSupport "pulseaudio" @@ -270,12 +301,12 @@ stdenv.mkDerivation ({ enableParallelBuilding = true; doCheck = false; # "--disable-tests" above - installPhase = if stdenv.isDarwin then '' + installPhase = if buildStdenv.isDarwin then '' mkdir -p $out/Applications cp -LR dist/${binaryNameCapitalized}.app $out/Applications '' else null; - postInstall = lib.optionalString stdenv.isLinux '' + postInstall = lib.optionalString buildStdenv.isLinux '' # Remove SDK cruft. FIXME: move to a separate output? rm -rf $out/share/idl $out/include $out/lib/${binaryName}-devel-* @@ -283,7 +314,7 @@ stdenv.mkDerivation ({ gappsWrapperArgs+=(--argv0 "$out/bin/.${binaryName}-wrapped") ''; - postFixup = lib.optionalString stdenv.isLinux '' + postFixup = lib.optionalString buildStdenv.isLinux '' # Fix notifications. LibXUL uses dlopen for this, unfortunately; see #18712. patchelf --set-rpath "${lib.getLib libnotify }/lib:$(patchelf --print-rpath "$out"/lib/${binaryName}*/libxul.so)" \ @@ -302,6 +333,7 @@ stdenv.mkDerivation ({ version = ffversion; isFirefox3Like = true; gtk = gtk2; + inherit alsaSupport; inherit nspr; inherit ffmpegSupport; inherit gssSupport; diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix index 115588c226f..79391887608 100644 --- a/pkgs/applications/networking/browsers/firefox/packages.nix +++ b/pkgs/applications/networking/browsers/firefox/packages.nix @@ -7,10 +7,10 @@ in rec { firefox = common rec { pname = "firefox"; - ffversion = "81.0.2"; + ffversion = "82.0"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${ffversion}/source/firefox-${ffversion}.source.tar.xz"; - sha512 = "1szsj7rwpn7ggiavvnc38a75ip0r3p5bgr2kvy2hq7519abzmr3z49jg4alpsy1ndkfylvh28zjw9h5xys0bvs40f33ps90j60z8gla"; + sha512 = "3lbvlb6yggd5v0pkr0x6j350jc5dpclqz7bv4i06r97a5ijdgfc7c6y605966hvw24v17byxr120xc7a39ikl1wnls7a9gyzyqcwyw8"; }; patches = [ @@ -36,10 +36,10 @@ rec { firefox-esr-78 = common rec { pname = "firefox-esr"; - ffversion = "78.3.1esr"; + ffversion = "78.4.0esr"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${ffversion}/source/firefox-${ffversion}.source.tar.xz"; - sha512 = "10a7xfp396n81aj17fbl1b1jr8gbn5ild2ig5cfz6r5ff3wfbjs3x0iqrlwqnjfdqq2pw19k2yrv91iwymd8jwjj4p35xsfivgn0a0n"; + sha512 = "13640ssp1nq9dsfv8jqfw2paqk3wzwc4r47mvbhb4l9h990gzzb2chhlcjq066b7r3q9s0nq3iyk847vzi7z1yvhrhsnzfgk9g9gpnr"; }; patches = [ diff --git a/pkgs/applications/networking/browsers/firefox/wrapper.nix b/pkgs/applications/networking/browsers/firefox/wrapper.nix index 424c45d305e..9c8625495b2 100644 --- a/pkgs/applications/networking/browsers/firefox/wrapper.nix +++ b/pkgs/applications/networking/browsers/firefox/wrapper.nix @@ -2,7 +2,7 @@ ## various stuff that can be plugged in , flashplayer, hal-flash -, ffmpeg, xorg, libpulseaudio, libcanberra-gtk2, libglvnd +, ffmpeg, xorg, alsaLib, libpulseaudio, libcanberra-gtk2, libglvnd , gnome3/*.gnome-shell*/ , browserpass, chrome-gnome-shell, uget-integrator, plasma-browser-integration, bukubrow , tridactyl-native @@ -39,6 +39,7 @@ let enableAdobeFlash = cfg.enableAdobeFlash or false; ffmpegSupport = browser.ffmpegSupport or false; gssSupport = browser.gssSupport or false; + alsaSupport = browser.alsaSupport or false; plugins = let @@ -76,6 +77,7 @@ let (with xorg; [ stdenv.cc libX11 libXxf86dga libXxf86vm libXext libXt alsaLib zlib ]) ++ lib.optional (enableAdobeFlash && (cfg.enableAdobeFlashDRM or false)) hal-flash ++ lib.optional (config.pulseaudio or true) libpulseaudio + ++ lib.optional alsaSupport alsaLib ++ pkcs11Modules; gtk_modules = [ libcanberra-gtk2 ]; diff --git a/pkgs/applications/networking/browsers/google-chrome/default.nix b/pkgs/applications/networking/browsers/google-chrome/default.nix index fb261c28607..727090a4c5c 100644 --- a/pkgs/applications/networking/browsers/google-chrome/default.nix +++ b/pkgs/applications/networking/browsers/google-chrome/default.nix @@ -150,7 +150,10 @@ in stdenv.mkDerivation { description = "A freeware web browser developed by Google"; homepage = "https://www.google.com/chrome/browser/"; license = licenses.unfree; - maintainers = [ maintainers.msteen ]; + maintainers = with maintainers; [ primeos msteen ]; + # Note from primeos: By updating Chromium I also update Google Chrome and + # will try to merge PRs and respond to issues but I'm not actually using + # Google Chrome. msteen is the actual user/maintainer. platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix index 247b2457b5a..3affcba863c 100644 --- a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix +++ b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix @@ -74,7 +74,7 @@ let in stdenv.mkDerivation rec { pname = "flashplayer"; - version = "32.0.0.433"; + version = "32.0.0.445"; src = fetchurl { url = @@ -85,14 +85,14 @@ stdenv.mkDerivation rec { sha256 = if debug then if arch == "x86_64" then - "18hr026743swpdjjk7cg3hnpw2ws3q246xnkb326lyvv90wqlfni" + "0jn1g8k8fkikhi0xlcsx5a43lxrj6ynwbxn55b17wacsqw20b9ii" else - "1yhyirii6rmnk420imaa160r9akarb3jrrlyas5a8d2y65gya71g" + "104af8sy0qq45agg3lpjwn1cp8lhpcjiim6gqn4cymcfp8d7ngg0" else if arch == "x86_64" then - "0k80i98zkpf6r46y1aw2zg1dsgbirg6rc8q21vycpvln395jq0pf" + "1dd52nhnl3f1d7r82gq28scna5qr39gpfqkgrhzd6cxd2vnhnhjn" else - "1qw6hjwv9y7qr333k4nlpd7fwyzbsk833sx2slfgjfhsbipr7p3r"; + "09ayb637cyf5x06xmhvad2znss7ak7r4n8z3wq7qmn0pmjdsa5a3"; }; nativeBuildInputs = [ unzip ]; diff --git a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix index 996d298df58..75c97cdd341 100644 --- a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix +++ b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix @@ -50,7 +50,7 @@ stdenv.mkDerivation { pname = "flashplayer-standalone"; - version = "32.0.0.433"; + version = "32.0.0.445"; src = fetchurl { url = @@ -60,9 +60,9 @@ stdenv.mkDerivation { "https://fpdownload.macromedia.com/pub/flashplayer/updaters/32/flash_player_sa_linux.x86_64.tar.gz"; sha256 = if debug then - "1ys523wwhvj96jph435lnyp07qzg9f70j349l7ggwgg96rflalpf" + "0iqmdd222mjsf3rdbcm4z974i5q9y4i5agnhn039k0hpydi4zdcr" else - "1ycw2amis7yvidc6q87gls6rb305p89pr7mhzknc10v0nh34781m"; + "07vz17zhwh31phccpbmwgfa3fdb2f7bnc3sf66ipsw1xcqgncpsx"; }; nativeBuildInputs = [ unzip ]; diff --git a/pkgs/applications/networking/browsers/next/default.nix b/pkgs/applications/networking/browsers/next/default.nix deleted file mode 100644 index e03f918a587..00000000000 --- a/pkgs/applications/networking/browsers/next/default.nix +++ /dev/null @@ -1,95 +0,0 @@ -{ stdenv -, fetchFromGitHub -, lispPackages -, sbcl -, callPackage -}: - -let - - # This is the wrapped webkitgtk platform port that we hardcode into the Lisp Core. - # See https://github.com/atlas-engineer/next/tree/master/ports#next-platform-ports - next-gtk-webkit = callPackage ./next-gtk-webkit.nix {}; - -in - -stdenv.mkDerivation rec { - pname = "next"; - version = "1.5.0"; - - src = fetchFromGitHub { - owner = "atlas-engineer"; - repo = "next"; - rev = version; - sha256 = "1gqkp185wcwaxr8py90hqk44nqjblrrdwvig19gizrbzr2gx2zhy"; - }; - - nativeBuildInputs = [ - sbcl - ] ++ (with lispPackages; [ - prove-asdf - trivial-features - ]); - - buildInputs = with lispPackages; [ - alexandria - bordeaux-threads - cl-annot - cl-ansi-text - cl-css - cl-json - cl-markup - cl-ppcre - cl-ppcre-unicode - cl-prevalence - closer-mop - dbus - dexador - ironclad - local-time - log4cl - lparallel - mk-string-metrics - parenscript - plump - quri - serapeum - sqlite - str - swank - trivia - trivial-clipboard - trivial-types - unix-opts - ]; - - # This reference is unfortunately not detected by Nix - propagatedBuildInputs = [ next-gtk-webkit ]; - - prePatch = '' - substituteInPlace source/ports/gtk-webkit.lisp \ - --replace "next-gtk-webkit" "${next-gtk-webkit}/bin/next-gtk-webkit" - ''; - - buildPhase = '' - common-lisp.sh --eval "(require :asdf)" \ - --eval "(asdf:load-asd (truename \"next.asd\") :name \"next\")" \ - --eval '(asdf:make :next)' \ - --quit - ''; - - installPhase = '' - install -D -m0755 next $out/bin/next - ''; - - # Stripping destroys the generated SBCL image - dontStrip = true; - - meta = with stdenv.lib; { - description = "Infinitely extensible web-browser (with Lisp development files using WebKitGTK platform port)"; - homepage = "https://next.atlas.engineer"; - license = licenses.bsd3; - maintainers = [ maintainers.lewo ]; - platforms = [ "x86_64-linux" ]; - }; -} diff --git a/pkgs/applications/networking/browsers/next/next-gtk-webkit.nix b/pkgs/applications/networking/browsers/next/next-gtk-webkit.nix deleted file mode 100644 index 316913be000..00000000000 --- a/pkgs/applications/networking/browsers/next/next-gtk-webkit.nix +++ /dev/null @@ -1,54 +0,0 @@ -# https://github.com/atlas-engineer/next/tree/master/ports/gtk-webkit - -{ stdenv -, pkg-config -, next -, webkitgtk -, gtk3 -, glib -, gsettings-desktop-schemas -, glib-networking -, gst_all_1 -, wrapGAppsHook -}: - -stdenv.mkDerivation rec { - pname = "next-gtk-webkit"; - inherit (next) src version; - - nativeBuildInputs = [ - pkg-config - wrapGAppsHook - ]; - - buildInputs = [ - glib - glib-networking - gsettings-desktop-schemas - gtk3 - webkitgtk - gst_all_1.gstreamer - gst_all_1.gst-libav - gst_all_1.gst-plugins-base - gst_all_1.gst-plugins-good - gst_all_1.gst-plugins-bad - gst_all_1.gst-plugins-ugly - ]; - - makeFlags = [ - "gtk-webkit" - "PREFIX=${placeholder "out"}" - ]; - - installTargets = [ - "install-gtk-webkit" - ]; - - meta = with stdenv.lib; { - description = "Infinitely extensible web-browser (user interface only)"; - homepage = "https://next.atlas.engineer"; - license = licenses.bsd3; - maintainers = [ maintainers.lewo ]; - platforms = [ "x86_64-linux" ]; - }; -} diff --git a/pkgs/applications/networking/browsers/nyxt/default.nix b/pkgs/applications/networking/browsers/nyxt/default.nix new file mode 100644 index 00000000000..ff99b1c21dd --- /dev/null +++ b/pkgs/applications/networking/browsers/nyxt/default.nix @@ -0,0 +1,57 @@ +{ stdenv, lib, lispPackages, sbcl +, makeWrapper, wrapGAppsHook, gst_all_1 +, glib, gdk-pixbuf, cairo +, mime-types, pango, gtk3 +, glib-networking, gsettings-desktop-schemas +, xclip, notify-osd, enchant +}: + +stdenv.mkDerivation rec { + pname = "nyxt"; + inherit (lispPackages.nyxt.meta) version; + + src = lispPackages.nyxt; + + nativeBuildInputs = [ makeWrapper wrapGAppsHook ]; + gstBuildInputs = with gst_all_1; [ + gstreamer gst-libav + gst-plugins-base + gst-plugins-good + gst-plugins-bad + gst-plugins-ugly + ]; + buildInputs = [ + glib gdk-pixbuf cairo + mime-types pango gtk3 + glib-networking gsettings-desktop-schemas + xclip notify-osd enchant + ] ++ gstBuildInputs; + + GST_PLUGIN_SYSTEM_PATH_1_0 = lib.concatMapStringsSep ":" (p: "${p}/lib/gstreamer-1.0") gstBuildInputs; + + dontWrapGApps = true; + installPhase = '' + mkdir -p $out/share/applications/ + sed "s/VERSION/$version/" $src/lib/common-lisp/nyxt/assets/nyxt.desktop > $out/share/applications/nyxt.desktop + for i in 16 32 128 256 512; do + mkdir -p "$out/share/icons/hicolor/''${i}x''${i}/apps/" + cp -f $src/lib/common-lisp/nyxt/assets/nyxt_''${i}x''${i}.png "$out/share/icons/hicolor/''${i}x''${i}/apps/nyxt.png" + done + + mkdir -p $out/bin && makeWrapper $src/bin/nyxt $out/bin/nyxt \ + --prefix GST_PLUGIN_SYSTEM_PATH_1_0 : "${GST_PLUGIN_SYSTEM_PATH_1_0}" \ + --argv0 nyxt "''${gappsWrapperArgs[@]}" + ''; + + checkPhase = '' + $out/bin/nyxt -h + ''; + + meta = with stdenv.lib; { + description = "Infinitely extensible web-browser (with Lisp development files using WebKitGTK platform port)"; + homepage = "https://nyxt.atlas.engineer"; + license = licenses.bsd3; + maintainers = with maintainers; [ lewo ]; + platforms = [ "x86_64-linux" ]; + }; +} diff --git a/pkgs/applications/networking/browsers/qutebrowser/default.nix b/pkgs/applications/networking/browsers/qutebrowser/default.nix index 69ca08e990c..84a6f7b92fa 100644 --- a/pkgs/applications/networking/browsers/qutebrowser/default.nix +++ b/pkgs/applications/networking/browsers/qutebrowser/default.nix @@ -12,12 +12,12 @@ assert withMediaPlayback -> gst_all_1 != null; let python3Packages = python3.pkgs; pdfjs = let - version = "2.4.456"; + version = "2.6.347"; in fetchzip rec { name = "pdfjs-${version}"; url = "https://github.com/mozilla/pdf.js/releases/download/v${version}/${name}-dist.zip"; - sha256 = "02hpy96pi06gdq2s7n56ycm34d6d3gf8ly22y366np5vpwmc29rx"; + sha256 = "0d016fyg81cq464li01xlkf9rxrb3rpsvmk5gh9m4d5yzmcakkfm"; stripRoot = false; }; @@ -31,12 +31,12 @@ let in mkDerivationWith python3Packages.buildPythonApplication rec { pname = "qutebrowser"; - version = "1.13.1"; + version = "1.14.0"; # the release tarballs are different from the git checkout! src = fetchurl { url = "https://github.com/qutebrowser/qutebrowser/releases/download/v${version}/${pname}-${version}.tar.gz"; - sha256 = "1n72dvrv4dch4i07lsis76p7g16a039fwx8rk7w8q9f60wgqb5i8"; + sha256 = "0jip413yvyhdaywz0iadc32aaanjnhbx1d1vwzx3z1xbgc4i9svn"; }; # Needs tox diff --git a/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix b/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix index d8a2e042993..d362e4c9b25 100644 --- a/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix +++ b/pkgs/applications/networking/browsers/tor-browser-bundle-bin/default.nix @@ -91,23 +91,22 @@ let fteLibPath = makeLibraryPath [ stdenv.cc.cc gmp ]; # Upstream source - version = "10.0"; + version = "10.0.2"; lang = "en-US"; srcs = { x86_64-linux = fetchurl { url = "https://dist.torproject.org/torbrowser/${version}/tor-browser-linux64-${version}_${lang}.tar.xz"; - sha256 = "1l2rfknffnh6hsi16dzps1wav5s723vyk57fzv9y5vjmbcbf7l2l"; + sha256 = "sha256-JBJDMC44VSh1ekXPxsVvFk5nOB8Ro4UGtD32pG1weP8="; }; i686-linux = fetchurl { url = "https://dist.torproject.org/torbrowser/${version}/tor-browser-linux32-${version}_${lang}.tar.xz"; - sha256 = "0x80w02ckb6mznrm1gjdpkxk9yf2rdcl16ljjglivq358a309cl2"; + sha256 = "sha256-EanW2Q8TtCPY5FSp8zfgBXMte9+RfKE24fu8ROtArK0="; }; }; in - stdenv.mkDerivation rec { pname = "tor-browser-bundle-bin"; inherit version; diff --git a/pkgs/applications/networking/browsers/ungoogled-chromium/common.nix b/pkgs/applications/networking/browsers/ungoogled-chromium/common.nix index 421d6bb745a..3df8fb3afdb 100644 --- a/pkgs/applications/networking/browsers/ungoogled-chromium/common.nix +++ b/pkgs/applications/networking/browsers/ungoogled-chromium/common.nix @@ -352,15 +352,8 @@ let NIX_CFLAGS_COMPILE = "-Wno-unknown-warning-option"; buildPhase = let - # Build paralelism: on Hydra the build was frequently running into memory - # exhaustion, and even other users might be running into similar issues. - # -j is halved to avoid memory problems, and -l is slightly increased - # so that the build gets slight preference before others - # (it will often be on "critical path" and at risk of timing out) buildCommand = target: '' - ninja -C "${buildPath}" \ - -j$(( ($NIX_BUILD_CORES+1) / 2 )) -l$(( $NIX_BUILD_CORES+1 )) \ - "${target}" + ninja -C "${buildPath}" -j$NIX_BUILD_CORES -l$NIX_BUILD_CORES "${target}" ( source chrome/installer/linux/common/installer.include PACKAGE=$packageName diff --git a/pkgs/applications/networking/browsers/ungoogled-chromium/plugins.nix b/pkgs/applications/networking/browsers/ungoogled-chromium/plugins.nix index 530a4c8a4ae..c725f87d3a2 100644 --- a/pkgs/applications/networking/browsers/ungoogled-chromium/plugins.nix +++ b/pkgs/applications/networking/browsers/ungoogled-chromium/plugins.nix @@ -44,11 +44,11 @@ let flash = stdenv.mkDerivation rec { pname = "flashplayer-ppapi"; - version = "32.0.0.433"; + version = "32.0.0.445"; src = fetchzip { url = "https://fpdownload.adobe.com/pub/flashplayer/pdc/${version}/flash_player_ppapi_linux.x86_64.tar.gz"; - sha256 = "1wfwnmai6wnwi6cfxwqix6n471jjyl6nc7p67sa7cfqwg16b53kx"; + sha256 = "1r9vd210d2qp501q40pjx60mzah08rg0f8jk5rpp52ddajwggalv"; stripRoot = false; }; diff --git a/pkgs/applications/networking/c14/default.nix b/pkgs/applications/networking/c14/default.nix index afd9aa53ac6..58d9d026f97 100644 --- a/pkgs/applications/networking/c14/default.nix +++ b/pkgs/applications/networking/c14/default.nix @@ -14,7 +14,7 @@ buildGoPackage rec { }; meta = with stdenv.lib; { - description = "C14 is designed for data archiving & long-term backups."; + description = "C14 is designed for data archiving & long-term backups"; homepage = "https://www.online.net/en/storage/c14-cold-storage"; license = licenses.mit; maintainers = with maintainers; [ apeyroux ]; diff --git a/pkgs/applications/networking/cloudflared/default.nix b/pkgs/applications/networking/cloudflared/default.nix index 96767f63653..47e2cc04b39 100644 --- a/pkgs/applications/networking/cloudflared/default.nix +++ b/pkgs/applications/networking/cloudflared/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "cloudflared"; - version = "2020.6.1"; + version = "2020.10.0"; src = fetchFromGitHub { owner = "cloudflare"; repo = "cloudflared"; rev = version; - sha256 = "09jdgpglm4v7pivx8016zzdvj0xkdhaa8xl71p2akc2jn8i8i6gb"; + sha256 = "1ssmyll13pf19fxq34iw4x7ps8p4mcg9nwlx00hp5sahhwx4iz01"; }; vendorSha256 = null; diff --git a/pkgs/applications/networking/cluster/argo/default.nix b/pkgs/applications/networking/cluster/argo/default.nix index 72c3955f90f..49b45308ce3 100644 --- a/pkgs/applications/networking/cluster/argo/default.nix +++ b/pkgs/applications/networking/cluster/argo/default.nix @@ -19,16 +19,16 @@ let in buildGoModule rec { pname = "argo"; - version = "2.10.1"; + version = "2.11.6"; src = fetchFromGitHub { owner = "argoproj"; repo = "argo"; rev = "v${version}"; - sha256 = "1k023rq4p0hvq5famxm83csp3zsijrki8myk6v83xyfigwxc8sia"; + sha256 = "1vlz1f4hyzgz1x9xgzlmpnbjba8xyhpx9ybia0pwilfg7mwfq92r"; }; - vendorSha256 = "0fqdxs3r4249qxlc9cac0lpbqf2aifkcah07v0cckb9rxfyiwhjz"; + vendorSha256 = "1ca0ssvbi4vrsn9ljc783hnh9bmf5p8nr1lz5wm8g3gbrrrf1ray"; doCheck = false; diff --git a/pkgs/applications/networking/cluster/atlantis/default.nix b/pkgs/applications/networking/cluster/atlantis/default.nix index d3e18ce691f..15c5f0e97c4 100644 --- a/pkgs/applications/networking/cluster/atlantis/default.nix +++ b/pkgs/applications/networking/cluster/atlantis/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "atlantis"; - version = "0.15.0"; + version = "0.15.1"; src = fetchFromGitHub { owner = "runatlantis"; repo = "atlantis"; rev = "v${version}"; - sha256 = "0nb0dm4yn6f5pw7clgb2d1khcwcxiidqyc0sdh38wwqg0zyil0cz"; + sha256 = "0xxg48f28ac7x6kap6w1hgsimdc604ivkck4dx7p5p7xd3s7gld5"; }; vendorSha256 = null; diff --git a/pkgs/applications/networking/cluster/docker-machine/default.nix b/pkgs/applications/networking/cluster/docker-machine/default.nix index a801a122374..93f5a85c33a 100644 --- a/pkgs/applications/networking/cluster/docker-machine/default.nix +++ b/pkgs/applications/networking/cluster/docker-machine/default.nix @@ -25,7 +25,7 @@ buildGoPackage rec { meta = with stdenv.lib; { homepage = "https://docs.docker.com/machine/"; - description = "Docker Machine is a tool that lets you install Docker Engine on virtual hosts, and manage Docker Engine on the hosts."; + description = "Docker Machine is a tool that lets you install Docker Engine on virtual hosts, and manage Docker Engine on the hosts"; license = licenses.asl20; maintainers = with maintainers; [ offline tailhook ]; platforms = platforms.unix; diff --git a/pkgs/applications/networking/cluster/docker-machine/hyperkit.nix b/pkgs/applications/networking/cluster/docker-machine/hyperkit.nix index a9cdbf79077..d05b34cd7de 100644 --- a/pkgs/applications/networking/cluster/docker-machine/hyperkit.nix +++ b/pkgs/applications/networking/cluster/docker-machine/hyperkit.nix @@ -15,7 +15,7 @@ buildGoModule rec { meta = with lib; { homepage = "https://minikube.sigs.k8s.io/docs/drivers/hyperkit"; - description = "HyperKit driver for docker-machine."; + description = "HyperKit driver for docker-machine"; license = licenses.asl20; maintainers = with maintainers; [ atkinschang ]; platforms = platforms.darwin; diff --git a/pkgs/applications/networking/cluster/docker-machine/kvm.nix b/pkgs/applications/networking/cluster/docker-machine/kvm.nix index 9352ba69da8..024572ec3db 100644 --- a/pkgs/applications/networking/cluster/docker-machine/kvm.nix +++ b/pkgs/applications/networking/cluster/docker-machine/kvm.nix @@ -20,7 +20,7 @@ buildGoPackage rec { meta = with stdenv.lib; { homepage = "https://github.com/dhiltgen/docker-machine-kvm"; - description = "KVM driver for docker-machine."; + description = "KVM driver for docker-machine"; license = licenses.asl20; maintainers = with maintainers; [ offline ]; platforms = platforms.unix; diff --git a/pkgs/applications/networking/cluster/docker-machine/kvm2.nix b/pkgs/applications/networking/cluster/docker-machine/kvm2.nix index 172370d25e9..9ef43bed2ee 100644 --- a/pkgs/applications/networking/cluster/docker-machine/kvm2.nix +++ b/pkgs/applications/networking/cluster/docker-machine/kvm2.nix @@ -19,7 +19,7 @@ buildGoModule rec { meta = with lib; { homepage = "https://minikube.sigs.k8s.io/docs/drivers/kvm2"; - description = "KVM2 driver for docker-machine."; + description = "KVM2 driver for docker-machine"; license = licenses.asl20; maintainers = with maintainers; [ tadfisher atkinschang ]; platforms = platforms.linux; diff --git a/pkgs/applications/networking/cluster/docker-machine/xhyve.nix b/pkgs/applications/networking/cluster/docker-machine/xhyve.nix index 8c63a70b6d6..a740d0486db 100644 --- a/pkgs/applications/networking/cluster/docker-machine/xhyve.nix +++ b/pkgs/applications/networking/cluster/docker-machine/xhyve.nix @@ -31,7 +31,7 @@ buildGoPackage rec { meta = with stdenv.lib; { homepage = "https://github.com/machine-drivers/docker-machine-driver-xhyve"; - description = "Xhyve driver for docker-machine."; + description = "Xhyve driver for docker-machine"; license = licenses.bsd3; maintainers = with maintainers; [ periklis ]; platforms = platforms.darwin; diff --git a/pkgs/applications/networking/cluster/fluxctl/default.nix b/pkgs/applications/networking/cluster/fluxctl/default.nix index 44e21de0a03..fe45b9ccb40 100644 --- a/pkgs/applications/networking/cluster/fluxctl/default.nix +++ b/pkgs/applications/networking/cluster/fluxctl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "fluxctl"; - version = "1.20.2"; + version = "1.21.0"; src = fetchFromGitHub { owner = "weaveworks"; repo = "flux"; rev = version; - sha256 = "1a44lmrvi5f9jr04rblhcsg3zvqzvdp9wyw4m4h4scsqp5g7dfb7"; + sha256 = "007i6kb80142v19w2dm3667sskcvdp1ilg3q3f9gjgr9c5nrg1m2"; }; - vendorSha256 = "1yzh6iglrzd43yqs1b6qh1i62b6qaz3232lgxyg3gmc81p0i5kr0"; + vendorSha256 = "01v4x2mk5jglnigq0iic52f84vzx56zh46i7v2wlq8ninj8y1k0x"; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/applications/networking/cluster/helm/default.nix b/pkgs/applications/networking/cluster/helm/default.nix index 7a5ecc5c80d..a0daba8d8f2 100644 --- a/pkgs/applications/networking/cluster/helm/default.nix +++ b/pkgs/applications/networking/cluster/helm/default.nix @@ -2,15 +2,15 @@ buildGoModule rec { pname = "helm"; - version = "3.3.4"; + version = "3.4.0"; src = fetchFromGitHub { owner = "helm"; repo = "helm"; rev = "v${version}"; - sha256 = "1b719kzchgis4imscgf6i7dvc1mq3ymgh5ganpb89kcs88qw3szj"; + sha256 = "1z5s8c6yrc1v2y54lx2mbyz31schzpaz2r304m0wwxhn06p43sl0"; }; - vendorSha256 = "0f8a0psvic923rh13f5041p7hr6w8dy9qxdw3l195yky5cf3fj6w"; + vendorSha256 = "0vcvmbvfmj0bi5msjhy9qcqabiscjpfqpnb1lxy49mshs902qc14"; doCheck = false; diff --git a/pkgs/applications/networking/cluster/helmfile/default.nix b/pkgs/applications/networking/cluster/helmfile/default.nix index 785a454fea2..f8c7ce2254e 100644 --- a/pkgs/applications/networking/cluster/helmfile/default.nix +++ b/pkgs/applications/networking/cluster/helmfile/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "helmfile"; - version = "0.130.1"; + version = "0.132.1"; src = fetchFromGitHub { owner = "roboll"; repo = "helmfile"; rev = "v${version}"; - sha256 = "14k3281sxin4ki78f2v75nyky1jxyhyq5aw06mhdp0w5ql9b02m4"; + sha256 = "03i9pl3iwqk5az73qm9rxdq8c5nd9l4w3c28yk55bfgpwpnxcwjc"; }; - vendorSha256 = "1k3aamsm97w22pdip2916a5f619rvnif7s8g6815pzsapgnpp4qp"; + vendorSha256 = "0r4p4nwhmxg06qyf86gd2g61l4r1mlpblh4vhsc1shbz9iigykzi"; doCheck = false; diff --git a/pkgs/applications/networking/cluster/helmsman/default.nix b/pkgs/applications/networking/cluster/helmsman/default.nix index 19c7234e11b..d4f1e82d511 100644 --- a/pkgs/applications/networking/cluster/helmsman/default.nix +++ b/pkgs/applications/networking/cluster/helmsman/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "helmsman"; - version = "3.4.4"; + version = "3.4.6"; src = fetchFromGitHub { owner = "Praqma"; repo = "helmsman"; rev = "v${version}"; - sha256 = "01vjghak2szif0p82kall5jw7mbfh4fg7fcjkblmic7l0vlqhfac"; + sha256 = "018bkl6q6q8njv9qy87affs0g6c716vmhcqv2czv8qz454hn7i5h"; }; vendorSha256 = "05vnysr5r3hbayss1pyifgp989kjw81h95iack8ady62k6ys5njl"; diff --git a/pkgs/applications/networking/cluster/jx/default.nix b/pkgs/applications/networking/cluster/jx/default.nix index 5199bbfaf33..72b365d01b4 100644 --- a/pkgs/applications/networking/cluster/jx/default.nix +++ b/pkgs/applications/networking/cluster/jx/default.nix @@ -35,7 +35,7 @@ buildGoModule rec { ''; meta = with lib; { - description = "JX is a command line tool for installing and using Jenkins X."; + description = "Command line tool for installing and using Jenkins X"; homepage = "https://jenkins-x.io"; longDescription = '' Jenkins X provides automated CI+CD for Kubernetes with Preview diff --git a/pkgs/applications/networking/cluster/k3s/default.nix b/pkgs/applications/networking/cluster/k3s/default.nix index aed60bbfe85..ae98fbbcc2d 100644 --- a/pkgs/applications/networking/cluster/k3s/default.nix +++ b/pkgs/applications/networking/cluster/k3s/default.nix @@ -9,6 +9,7 @@ , buildGoPackage , git , runc +, kmod , libseccomp , pkgconfig , ethtool @@ -150,7 +151,7 @@ let ''; meta = { - description = "The various binaries that get packaged into the final k3s binary."; + description = "The various binaries that get packaged into the final k3s binary"; license = licenses.asl20; homepage = "https://k3s.io"; maintainers = [ maintainers.euank ]; @@ -211,7 +212,7 @@ let ''; meta = { - description = "The k3s go binary which is used by the final wrapped output below."; + description = "The k3s go binary which is used by the final wrapped output below"; license = licenses.asl20; homepage = "https://k3s.io"; maintainers = [ maintainers.euank ]; @@ -226,6 +227,7 @@ stdenv.mkDerivation rec { # https://github.com/kubernetes/kubernetes/issues/26093#issuecomment-237202494 # Note the list in that issue is stale and some aren't relevant for k3s. k3sRuntimeDeps = [ + kmod socat iptables iproute @@ -257,7 +259,7 @@ stdenv.mkDerivation rec { ''; meta = { - description = "A lightweight Kubernetes distribution."; + description = "A lightweight Kubernetes distribution"; license = licenses.asl20; homepage = "https://k3s.io"; maintainers = [ maintainers.euank ]; diff --git a/pkgs/applications/networking/cluster/k9s/default.nix b/pkgs/applications/networking/cluster/k9s/default.nix index c365bf1e7a9..575bc5a5062 100644 --- a/pkgs/applications/networking/cluster/k9s/default.nix +++ b/pkgs/applications/networking/cluster/k9s/default.nix @@ -23,7 +23,7 @@ buildGoModule rec { doCheck = false; meta = with stdenv.lib; { - description = "Kubernetes CLI To Manage Your Clusters In Style."; + description = "Kubernetes CLI To Manage Your Clusters In Style"; homepage = "https://github.com/derailed/k9s"; license = licenses.asl20; maintainers = with maintainers; [ Gonzih markus1189 ]; diff --git a/pkgs/applications/networking/cluster/kops/default.nix b/pkgs/applications/networking/cluster/kops/default.nix index baf10e273fb..a81c33a84bb 100644 --- a/pkgs/applications/networking/cluster/kops/default.nix +++ b/pkgs/applications/networking/cluster/kops/default.nix @@ -64,8 +64,8 @@ rec { }; kops_1_18 = mkKops rec { - version = "1.18.1"; - sha256 = "0jw23vmq2v9czxyansggq4fapz1bcaclmxpw6na4dsn8zcssz320"; + version = "1.18.2"; + sha256 = "17na83j6sfhk69w9ssvicc0xd1904z952ad3zzbpha50lcy6nlhp"; rev = "v${version}"; }; } diff --git a/pkgs/applications/networking/cluster/kpt/default.nix b/pkgs/applications/networking/cluster/kpt/default.nix index a380cc200d9..9b43f143bdc 100644 --- a/pkgs/applications/networking/cluster/kpt/default.nix +++ b/pkgs/applications/networking/cluster/kpt/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kpt"; - version = "0.34.0"; + version = "0.35.0"; src = fetchFromGitHub { owner = "GoogleContainerTools"; repo = pname; rev = "v${version}"; - sha256 = "1x4g45sq8licjcccvad6w1yb9h2z2cc2xbpp073j1pafnqwmrswq"; + sha256 = "0pk4j809hh4hkr58wx42vyzcn2g7l2lb60f4j1837hkk3rwrxkpm"; }; - vendorSha256 = "1vpljhqbvwv3a7k4c7p3n4ixh32f8hp9cqj8jz03mzqlmf60pyfs"; + vendorSha256 = "0c5ycyjhzz18ny544ddrag39la0fl0d3zrbbv8szb5jx87jx67jj"; subPackages = [ "." ]; diff --git a/pkgs/applications/networking/cluster/kube-router/default.nix b/pkgs/applications/networking/cluster/kube-router/default.nix index d967c741fca..8e20093f5b2 100644 --- a/pkgs/applications/networking/cluster/kube-router/default.nix +++ b/pkgs/applications/networking/cluster/kube-router/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { pname = "kube-router"; - version = "1.0.1"; + version = "1.1.0"; goPackagePath = "github.com/cloudnativelabs/kube-router"; @@ -10,7 +10,7 @@ buildGoPackage rec { owner = "cloudnativelabs"; repo = pname; rev = "v${version}"; - sha256 = "00bypaccv8q9xdcz6vlvl1qxqxqssl21bs4nkd1a6q8b4jpl339z"; + sha256 = "0nsd371w667qhgiygxcg4kmynwldb0pbip6x03rc7j854hg8l7k0"; }; buildFlagsArray = '' diff --git a/pkgs/applications/networking/cluster/kubernetes/default.nix b/pkgs/applications/networking/cluster/kubernetes/default.nix index 691effa3923..a56db433194 100644 --- a/pkgs/applications/networking/cluster/kubernetes/default.nix +++ b/pkgs/applications/networking/cluster/kubernetes/default.nix @@ -15,13 +15,13 @@ with lib; stdenv.mkDerivation rec { pname = "kubernetes"; - version = "1.19.1"; + version = "1.19.3"; src = fetchFromGitHub { owner = "kubernetes"; repo = "kubernetes"; rev = "v${version}"; - sha256 = "1wnlw2rl14q7cb8shhldbavdamvl3w3mlfvymwfvmvxfxzhrjlaq"; + sha256 = "0fpkgrykkjmkrh327g6zf3r6s39bnv5w1wlqsvvzyp2zsswgw81v"; }; nativeBuildInputs = [ removeReferencesTo makeWrapper which go rsync go-bindata ]; diff --git a/pkgs/applications/networking/cluster/kubeseal/default.nix b/pkgs/applications/networking/cluster/kubeseal/default.nix index 0bd1967aec8..51b53ed8fa1 100644 --- a/pkgs/applications/networking/cluster/kubeseal/default.nix +++ b/pkgs/applications/networking/cluster/kubeseal/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "kubeseal"; - version = "0.12.5"; + version = "0.12.6"; src = fetchFromGitHub { owner = "bitnami-labs"; repo = "sealed-secrets"; rev = "v${version}"; - sha256 = "135ls3ngdz43qx6a49faczs2vdmccalsgak2hg0rairpy2jxym37"; + sha256 = "0h8v751jf8hws8zcai6vfsk5vmq6f9kwz2dg79l6xa0dfc2rv4zf"; }; vendorSha256 = null; diff --git a/pkgs/applications/networking/cluster/kubespy/default.nix b/pkgs/applications/networking/cluster/kubespy/default.nix index e71e598e23d..fa0e62c53fe 100644 --- a/pkgs/applications/networking/cluster/kubespy/default.nix +++ b/pkgs/applications/networking/cluster/kubespy/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kubespy"; - version = "0.5.1"; + version = "0.6.0"; src = fetchFromGitHub { rev = "v${version}"; owner = "pulumi"; repo = "kubespy"; - sha256 = "1p0qmn6458pa9la6zkvyrkgs2rhzfwsk9m3rk5fkmcfbh7b031r8"; + sha256 = "1xrwhxw2y0zpzsxp1rlm1wd0aqw6jda5ai5y1ards5djqsbsv87g"; }; - vendorSha256 = "0q85is01cbgxflnqdvxc9w5iqdizgvsc44h8z21j712bm2w7blqq"; + vendorSha256 = "0ajhbjs9ijpxp3svvj7pjiac78ps7vkqmqrizq18mllsry0m9pcl"; doCheck = false; diff --git a/pkgs/applications/networking/cluster/linkerd/default.nix b/pkgs/applications/networking/cluster/linkerd/default.nix index 70aeb784159..63e4e59ff45 100644 --- a/pkgs/applications/networking/cluster/linkerd/default.nix +++ b/pkgs/applications/networking/cluster/linkerd/default.nix @@ -18,7 +18,7 @@ buildGoModule { subPackages = [ "cli/cmd" ]; meta = with stdenv.lib; { - description = "A service mesh for Kubernetes and beyond."; + description = "A service mesh for Kubernetes and beyond"; homepage = "https://linkerd.io/"; license = licenses.asl20; maintainers = with maintainers; [ Gonzih ]; diff --git a/pkgs/applications/networking/cluster/minikube/default.nix b/pkgs/applications/networking/cluster/minikube/default.nix index 9a661263062..299c1fb523c 100644 --- a/pkgs/applications/networking/cluster/minikube/default.nix +++ b/pkgs/applications/networking/cluster/minikube/default.nix @@ -11,9 +11,9 @@ buildGoModule rec { pname = "minikube"; - version = "1.13.1"; + version = "1.14.1"; - vendorSha256 = "09bcp7pqbs9j06z1glpad70dqlsnrf69vn75l00bdjknbrvbzrb9"; + vendorSha256 = "057mlmja3mygfdf0cp0bcm0chq7s30bjcs5hqacwl6c79ivrjf89"; doCheck = false; @@ -21,7 +21,7 @@ buildGoModule rec { owner = "kubernetes"; repo = "minikube"; rev = "v${version}"; - sha256 = "1x4x40nwcdshxzpg22v8nlzaprz1c6sizam47mwvqmb53p9qv90q"; + sha256 = "000i30qsjx1h2x6b8vb5piq9lhjrz5hj9wza7gxsrzsf2z9rhryg"; }; nativeBuildInputs = [ go-bindata installShellFiles pkg-config which ]; diff --git a/pkgs/applications/networking/cluster/prow/default.nix b/pkgs/applications/networking/cluster/prow/default.nix index 60e79ed6690..b1ea88a11a3 100644 --- a/pkgs/applications/networking/cluster/prow/default.nix +++ b/pkgs/applications/networking/cluster/prow/default.nix @@ -52,7 +52,7 @@ buildGoModule rec { ]; meta = with lib; { - description = "Prow is a Kubernetes based CI/CD system"; + description = "A Kubernetes based CI/CD system"; longDescription = '' Prow is a Kubernetes based CI/CD system. Jobs can be triggered by various types of events and report their status to many different services. In diff --git a/pkgs/applications/networking/cluster/sonobuoy/default.nix b/pkgs/applications/networking/cluster/sonobuoy/default.nix index 32dbced0a46..c111f7eccfe 100644 --- a/pkgs/applications/networking/cluster/sonobuoy/default.nix +++ b/pkgs/applications/networking/cluster/sonobuoy/default.nix @@ -1,13 +1,13 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub }: # SHA of ${version} for the tool's help output -let rev = "c9c2a461cd3397909fe6e45ff71836347ef89fd8"; +let rev = "e03f9ee353717ccc5f58c902633553e34b2fe46a"; in -buildGoPackage rec { +buildGoModule rec { pname = "sonobuoy"; - version = "0.16.1"; + version = "0.19.0"; - goPackagePath = "github.com/heptio/sonobuoy"; + goPackagePath = "github.com/vmware-tanzu/sonobuoy"; buildFlagsArray = let t = goPackagePath; @@ -19,12 +19,16 @@ buildGoPackage rec { ''; src = fetchFromGitHub { - sha256 = "14qc5a7jbr403wjpk6pgpb94i72yx647sg9srz07q6drq650kyfv"; + sha256 = "1gw58a30akidk15wk8kk7f8lsyqr1q180j6fzr4462ahwxdbjgkr"; rev = "v${version}"; repo = "sonobuoy"; owner = "vmware-tanzu"; }; + vendorSha256 = "1kxzd4czv8992y7y47la5jjrbhk76sxcj3v5sx0k4xplgki7np6i"; + + subPackages = [ "." ]; + meta = with lib; { description = '' Diagnostic tool that makes it easier to understand the @@ -38,6 +42,6 @@ buildGoPackage rec { homepage = "https://sonobuoy.io"; license = licenses.asl20; - maintainers = with maintainers; [ carlosdagos saschagrunert ]; + maintainers = with maintainers; [ carlosdagos saschagrunert wilsonehusin ]; }; } diff --git a/pkgs/applications/networking/cluster/tektoncd-cli/default.nix b/pkgs/applications/networking/cluster/tektoncd-cli/default.nix new file mode 100644 index 00000000000..1e2a21d4667 --- /dev/null +++ b/pkgs/applications/networking/cluster/tektoncd-cli/default.nix @@ -0,0 +1,47 @@ +{ lib, buildGoModule, fetchFromGitHub, installShellFiles }: + +buildGoModule rec { + pname = "tektoncd-cli"; + version = "0.13.1"; + + src = fetchFromGitHub { + owner = "tektoncd"; + repo = "cli"; + rev = "v${version}"; + sha256 = "0cjih8h64wwdp022pn70xqxafdk34z2y2ipxb86dlf2zdrf9xv53"; + }; + + vendorSha256 = null; + + doCheck = false; + + nativeBuildInputs = [ installShellFiles ]; + + buildPhase = '' + make bin/tkn + ''; + + installPhase = '' + install bin/tkn -Dt $out/bin + + mkdir -p "$out/share/man/man1" + cp docs/man/man1/* "$out/share/man/man1" + + # TODO: Move to enhanced installShellCompletion when merged: PR #83630 + $out/bin/tkn completion bash > tkn.bash + $out/bin/tkn completion zsh > _tkn + installShellCompletion tkn.bash --zsh _tkn + ''; + + meta = with lib; { + description = "The Tekton Pipelines cli project provides a CLI for interacting with Tekton"; + homepage = "https://tekton.dev"; + longDescription = '' + The Tekton Pipelines cli project provides a CLI for interacting with Tekton! + For your convenience, it is recommended that you install the Tekton CLI, tkn, together with the core component of Tekton, Tekton Pipelines. + ''; + license = licenses.asl20; + maintainers = with maintainers; [ jk mstrangfeld ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/applications/networking/cluster/terraform-providers/cloudfoundry/default.nix b/pkgs/applications/networking/cluster/terraform-providers/cloudfoundry/default.nix new file mode 100644 index 00000000000..7e807d2ed5c --- /dev/null +++ b/pkgs/applications/networking/cluster/terraform-providers/cloudfoundry/default.nix @@ -0,0 +1,29 @@ +{ stdenv, buildGoModule, fetchFromGitHub }: + +buildGoModule rec { + pname = "terraform-provider-cloudfoundry"; + version = "0.12.6"; + + src = fetchFromGitHub { + owner = "cloudfoundry-community"; + repo = pname; + rev = "v${version}"; + sha256 = "0n5ybpzk6zkrnd9vpmbjlkm8fdp7nbfr046wih0jk72pmiyrcygi"; + }; + + vendorSha256 = "01lfsd9aw9w3kr1a2a5b7ac6d8jaij83lhxl4y4qsnjlqk86fbxq"; + + # needs a running cloudfoundry + doCheck = false; + + postInstall = "mv $out/bin/terraform-provider-cloudfoundry{,_v${version}}"; + + passthru = { provider-source-address = "registry.terraform.io/cloudfoundry-community/cloudfoundry"; }; + + meta = with stdenv.lib; { + homepage = "https://github.com/cloudfoundry-community/terraform-provider-cloudfoundry"; + description = "Terraform provider for cloudfoundry"; + license = licenses.mpl20; + maintainers = with maintainers; [ ris ]; + }; +} diff --git a/pkgs/applications/networking/cluster/terraform-providers/default.nix b/pkgs/applications/networking/cluster/terraform-providers/default.nix index 73fc6df024e..a75500c8eb3 100644 --- a/pkgs/applications/networking/cluster/terraform-providers/default.nix +++ b/pkgs/applications/networking/cluster/terraform-providers/default.nix @@ -149,8 +149,19 @@ let ''; }); + # provider was moved to the `vultr` organization, but kept the old references: + # https://github.com/vultr/terraform-provider-vultr/pull/67 + # this override should be removed as soon as new version (>1.4.1) is released. + vultr = automated-providers.vultr.overrideAttrs (attrs: { + prePatch = attrs.prePatch or "" + '' + substituteInPlace go.mod --replace terraform-providers/terraform-provider-vultr vultr/terraform-provider-vultr + substituteInPlace main.go --replace terraform-providers/terraform-provider-vultr vultr/terraform-provider-vultr + ''; + }); + # Packages that don't fit the default model ansible = callPackage ./ansible {}; + cloudfoundry = callPackage ./cloudfoundry {}; elasticsearch = callPackage ./elasticsearch {}; gandi = callPackage ./gandi {}; keycloak = callPackage ./keycloak {}; diff --git a/pkgs/applications/networking/cluster/terraform-providers/providers.json b/pkgs/applications/networking/cluster/terraform-providers/providers.json index c49f4cd2b1b..29bbac6f70b 100644 --- a/pkgs/applications/networking/cluster/terraform-providers/providers.json +++ b/pkgs/applications/networking/cluster/terraform-providers/providers.json @@ -328,9 +328,9 @@ "github": { "owner": "terraform-providers", "repo": "terraform-provider-github", - "rev": "v2.8.0", - "sha256": "11aw9wqnayl786hvbgnb9ijijaipaggj18vkn5y0kcj2v4dwq4wg", - "version": "2.8.0" + "rev": "v3.1.0", + "sha256": "1xl4fd1lfbn1vnrdmg2xljnv8hy6rmf0iv7g8pzbnzbvj2pi7w3b", + "version": "3.1.0" }, "gitlab": { "owner": "terraform-providers", @@ -934,6 +934,14 @@ "sha256": "1cl83afm00fflsd3skynjvncid3r74fkxfznrs1v8qypcg1j79g1", "version": "0.18.0" }, + "time": { + "owner": "hashicorp", + "provider-source-address": "registry.terraform.io/hashicorp/time", + "repo": "terraform-provider-time", + "rev": "v0.6.0", + "sha256": "0fb81hisjicib9rzbn51jqfrchyjd3hzq98adnf22cbra8wlnxlm", + "version": "0.6.0" + }, "tls": { "owner": "hashicorp", "provider-source-address": "registry.terraform.io/hashicorp/tls", @@ -1014,11 +1022,11 @@ "version": "0.1.0" }, "vultr": { - "owner": "terraform-providers", + "owner": "vultr", "repo": "terraform-provider-vultr", - "rev": "v1.3.0", - "sha256": "0swc2fvp83d6w0cqvyxs346c756wr48xbn8m8jqkmma5s4ab2y4k", - "version": "1.3.0" + "rev": "v1.4.1", + "sha256": "1jx9p4bwpa5zxig6gfk4akfsnbivvyhwcw8id2ch2ga9a67pwald", + "version": "1.4.1" }, "wavefront": { "owner": "terraform-providers", diff --git a/pkgs/applications/networking/cluster/terraform/default.nix b/pkgs/applications/networking/cluster/terraform/default.nix index 6153eaa145c..b73f24ed47d 100644 --- a/pkgs/applications/networking/cluster/terraform/default.nix +++ b/pkgs/applications/networking/cluster/terraform/default.nix @@ -157,8 +157,8 @@ in rec { }); terraform_0_13 = pluggable (generic { - version = "0.13.4"; - sha256 = "1yvcz14q82v9jq4b9knn6wgnhlhrsz2ncvxv4lh9y1avn56chsqc"; + version = "0.13.5"; + sha256 = "1fnydzm5h65pdy2gkq403sllx05cvpldkdzdpcy124ywljb4x9d8"; patches = [ ./provider-path.patch ]; passthru = { inherit plugins; }; }); diff --git a/pkgs/applications/networking/cluster/terragrunt/default.nix b/pkgs/applications/networking/cluster/terragrunt/default.nix index e8b602b8a80..e3f2adacfb2 100644 --- a/pkgs/applications/networking/cluster/terragrunt/default.nix +++ b/pkgs/applications/networking/cluster/terragrunt/default.nix @@ -1,35 +1,33 @@ -{ stdenv, lib, buildGoModule, fetchFromGitHub, terraform, makeWrapper }: +{ lib, buildGoModule, fetchFromGitHub, makeWrapper, terraform }: buildGoModule rec { pname = "terragrunt"; - version = "0.23.40"; + version = "0.25.5"; - src = fetchFromGitHub { + src = fetchFromGitHub { owner = "gruntwork-io"; repo = pname; rev = "v${version}"; - sha256 = "0gd2g1nl8dgj24mzk4qymcwnp6prbi3qxj863rkpi3k32zy2iw4k"; + sha256 = "19rsnhws4cvssxjmm22j746jck0wzrhwi24hnlwxkdaaw92yd36l"; }; - vendorSha256 = "0f466qn5vp74mwx9s4rcbw1x793w8hr5dcf2c12sgshya1bxs4nl"; + vendorSha256 = "0l85jx02dj9qvxs8l0ln5fln8vssi0fisblm5i1scz9x4a1jqg9n"; doCheck = false; buildInputs = [ makeWrapper ]; - preBuild = '' - buildFlagsArray+=("-ldflags" "-X main.VERSION=v${version}") - ''; + buildFlagsArray = [ "-ldflags=" "-X main.VERSION=v${version}" ]; postInstall = '' wrapProgram $out/bin/terragrunt \ --set TERRAGRUNT_TFPATH ${lib.getBin terraform.full}/bin/terraform ''; - meta = with stdenv.lib; { - description = "A thin wrapper for Terraform that supports locking for Terraform state and enforces best practices."; + meta = with lib; { + description = "A thin wrapper for Terraform that supports locking for Terraform state and enforces best practices"; homepage = "https://github.com/gruntwork-io/terragrunt/"; license = licenses.mit; - maintainers = with maintainers; [ peterhoeg ]; + maintainers = with maintainers; [ peterhoeg jk ]; }; } diff --git a/pkgs/applications/networking/dnscontrol/default.nix b/pkgs/applications/networking/dnscontrol/default.nix index 8fb14ae3b14..4d27ad5361f 100644 --- a/pkgs/applications/networking/dnscontrol/default.nix +++ b/pkgs/applications/networking/dnscontrol/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "dnscontrol"; - version = "3.3.0"; + version = "3.4.2"; src = fetchFromGitHub { owner = "StackExchange"; repo = pname; rev = "v${version}"; - sha256 = "0lldkx906imwm8mxcfafpanbgaqh0sdm3zdkwkn7j0nmngyncx9p"; + sha256 = "0bvvh68k2xjmmwafwdsijf3yb4ff9wbsl2ibad627l1y4js5615z"; }; - vendorSha256 = "16cc6hb2iwh1zwrrnb7s4dqxqhaj67gq3gfr5xvh5kqafd685hvx"; + vendorSha256 = "05nwfxqgkpbv5i0365wpsnnaq528a7srycd1dsdlssz1cy7i0d31"; subPackages = [ "." ]; diff --git a/pkgs/applications/networking/feedreaders/rss2email/default.nix b/pkgs/applications/networking/feedreaders/rss2email/default.nix index 977b71ebc50..0a28f9e074c 100644 --- a/pkgs/applications/networking/feedreaders/rss2email/default.nix +++ b/pkgs/applications/networking/feedreaders/rss2email/default.nix @@ -37,7 +37,7 @@ buildPythonApplication rec { ''; meta = with lib; { - description = "A tool that converts RSS/Atom newsfeeds to email."; + description = "A tool that converts RSS/Atom newsfeeds to email"; homepage = "https://pypi.python.org/pypi/rss2email"; license = licenses.gpl2; maintainers = with maintainers; [ jb55 Profpatsch ekleog ]; diff --git a/pkgs/applications/networking/google-drive-ocamlfuse/default.nix b/pkgs/applications/networking/google-drive-ocamlfuse/default.nix index ac6ad4f22fe..b9b1c1f54a9 100644 --- a/pkgs/applications/networking/google-drive-ocamlfuse/default.nix +++ b/pkgs/applications/networking/google-drive-ocamlfuse/default.nix @@ -1,25 +1,27 @@ -{ stdenv, buildDunePackage, fetchFromGitHub -, ocamlfuse, gapi_ocaml, ocaml_sqlite3 +{ lib, buildDunePackage, fetchFromGitHub +, ocaml_extlib, ocamlfuse, gapi_ocaml, ocaml_sqlite3 }: buildDunePackage rec { pname = "google-drive-ocamlfuse"; - version = "0.7.21"; + version = "0.7.22"; + + useDune2 = true; src = fetchFromGitHub { owner = "astrada"; repo = "google-drive-ocamlfuse"; rev = "v${version}"; - sha256 = "0by3qnjrr1mbxyl2n99zggx8dxnqlicsq2b2hhhxb2d0k8qn47sw"; + sha256 = "027j1r2iy8vnbqs8bv893f0909yk5312ki5p3zh2pdz6s865h750"; }; - buildInputs = [ ocamlfuse gapi_ocaml ocaml_sqlite3 ]; + buildInputs = [ ocaml_extlib ocamlfuse gapi_ocaml ocaml_sqlite3 ]; meta = { - homepage = "http://gdfuse.forge.ocamlcore.org/"; + inherit (src.meta) homepage; description = "A FUSE-based file system backed by Google Drive, written in OCaml"; - license = stdenv.lib.licenses.mit; - platforms = stdenv.lib.platforms.linux; - maintainers = with stdenv.lib.maintainers; [ obadz ]; + license = lib.licenses.mit; + platforms = lib.platforms.linux; + maintainers = with lib.maintainers; [ obadz ]; }; } diff --git a/pkgs/applications/networking/ids/snort/default.nix b/pkgs/applications/networking/ids/snort/default.nix index 0e0e1a55a18..7529e233e13 100644 --- a/pkgs/applications/networking/ids/snort/default.nix +++ b/pkgs/applications/networking/ids/snort/default.nix @@ -1,16 +1,20 @@ -{stdenv, pkgconfig, luajit, openssl, fetchurl, libpcap, pcre, libdnet, daq, zlib, flex, bison, makeWrapper}: +{stdenv, pkgconfig, luajit, openssl, fetchurl, libpcap, pcre, libdnet, daq, zlib, flex, bison, makeWrapper +, libtirpc +}: stdenv.mkDerivation rec { version = "2.9.16.1"; pname = "snort"; - + src = fetchurl { name = "${pname}-${version}.tar.gz"; url = "https://snort.org/downloads/archive/snort/${pname}-${version}.tar.gz"; sha256 = "13lzvjli6kbsnkd7lf0rm71l2mnz38pxk76ia9yrjb6clfhlbb73"; }; - - buildInputs = [ makeWrapper pkgconfig luajit openssl libpcap pcre libdnet daq zlib flex bison ]; + + buildInputs = [ makeWrapper pkgconfig luajit openssl libpcap pcre libdnet daq zlib flex bison libtirpc ]; + + NIX_CFLAGS_COMPILE = [ "-I${libtirpc.dev}/include/tirpc" ]; enableParallelBuilding = true; @@ -24,7 +28,7 @@ stdenv.mkDerivation rec { postInstall = '' wrapProgram $out/bin/snort --add-flags "--daq-dir ${daq}/lib/daq --dynamic-preprocessor-lib-dir $out/lib/snort_dynamicpreprocessor/ --dynamic-engine-lib-dir $out/lib/snort_dynamicengine" ''; - + meta = { description = "Network intrusion prevention and detection system (IDS/IPS)"; homepage = "https://www.snort.org"; diff --git a/pkgs/applications/networking/instant-messengers/bitlbee-facebook/default.nix b/pkgs/applications/networking/instant-messengers/bitlbee-facebook/default.nix index 07e7b74a43c..1a8110acacb 100644 --- a/pkgs/applications/networking/instant-messengers/bitlbee-facebook/default.nix +++ b/pkgs/applications/networking/instant-messengers/bitlbee-facebook/default.nix @@ -3,13 +3,13 @@ with stdenv.lib; stdenv.mkDerivation rec { pname = "bitlbee-facebook"; - version = "1.2.0"; + version = "1.2.1"; src = fetchFromGitHub { rev = "v${version}"; owner = "bitlbee"; repo = "bitlbee-facebook"; - sha256 = "11068zhb1v55b1x0nhjc4f3p0glccxpcyk5c1630hfdzkj7vyqhn"; + sha256 = "1yjhjhk3jzjip13lq009vlg84lm2lzwhac5jy0aq3vkcz6rp94rc"; }; nativeBuildInputs = [ autoconf automake libtool pkgconfig ]; diff --git a/pkgs/applications/networking/instant-messengers/bluejeans/default.nix b/pkgs/applications/networking/instant-messengers/bluejeans/default.nix index f8bcdc4bef7..8b634834058 100644 --- a/pkgs/applications/networking/instant-messengers/bluejeans/default.nix +++ b/pkgs/applications/networking/instant-messengers/bluejeans/default.nix @@ -39,11 +39,12 @@ stdenv.mkDerivation rec { pname = "bluejeans"; - version = "2.4.0"; + version = "2.17.0"; + buildNumber = "11"; src = fetchurl { - url = "https://swdl.bluejeans.com/desktop-app/linux/${version}/BlueJeans.rpm"; - sha256 = "180hc854ngwfn6y6nsrfn74rv78cxhq6sgshrca5zqv6wq3l98g0"; + url = "https://swdl.bluejeans.com/desktop-app/linux/${version}/BlueJeans_${version}.${buildNumber}.rpm"; + sha256 = "1h5jbnp5bwy6bpma9a1ia08v7bpz09fm66jsip470k1r7vjjwa68"; }; nativeBuildInputs = [ rpmextract makeWrapper ]; diff --git a/pkgs/applications/networking/instant-messengers/element/element-desktop-package.json b/pkgs/applications/networking/instant-messengers/element/element-desktop-package.json index 287c864d392..364f5a25d0a 100644 --- a/pkgs/applications/networking/instant-messengers/element/element-desktop-package.json +++ b/pkgs/applications/networking/instant-messengers/element/element-desktop-package.json @@ -2,7 +2,7 @@ "name": "element-desktop", "productName": "Element", "main": "src/electron-main.js", - "version": "1.7.9", + "version": "1.7.12", "description": "A feature-rich client for Matrix.org", "author": "Element", "repository": { @@ -62,7 +62,7 @@ }, "build": { "appId": "im.riot.app", - "electronVersion": "10.1.1", + "electronVersion": "10.1.3", "files": [ "package.json", { diff --git a/pkgs/applications/networking/instant-messengers/element/element-desktop-yarndeps.nix b/pkgs/applications/networking/instant-messengers/element/element-desktop-yarndeps.nix index 2a611aa630a..21374014c88 100644 --- a/pkgs/applications/networking/instant-messengers/element/element-desktop-yarndeps.nix +++ b/pkgs/applications/networking/instant-messengers/element/element-desktop-yarndeps.nix @@ -4394,11 +4394,11 @@ }; } { - name = "npm_user_validate___npm_user_validate_1.0.0.tgz"; + name = "npm_user_validate___npm_user_validate_1.0.1.tgz"; path = fetchurl { - name = "npm_user_validate___npm_user_validate_1.0.0.tgz"; - url = "https://registry.yarnpkg.com/npm-user-validate/-/npm-user-validate-1.0.0.tgz"; - sha1 = "8ceca0f5cea04d4e93519ef72d0557a75122e951"; + name = "npm_user_validate___npm_user_validate_1.0.1.tgz"; + url = "https://registry.yarnpkg.com/npm-user-validate/-/npm-user-validate-1.0.1.tgz"; + sha1 = "31428fc5475fe8416023f178c0ab47935ad8c561"; }; } { diff --git a/pkgs/applications/networking/instant-messengers/element/element-desktop.nix b/pkgs/applications/networking/instant-messengers/element/element-desktop.nix index 5b537b2b7bf..b31841c5e79 100644 --- a/pkgs/applications/networking/instant-messengers/element/element-desktop.nix +++ b/pkgs/applications/networking/instant-messengers/element/element-desktop.nix @@ -8,12 +8,12 @@ let executableName = "element-desktop"; - version = "1.7.9"; + version = "1.7.12"; src = fetchFromGitHub { owner = "vector-im"; repo = "riot-desktop"; rev = "v${version}"; - sha256 = "0hk9y6zzabfdi35fqzl9987d98a6k74fi0mzmhhvhvvpj8i1ldrn"; + sha256 = "08d9llrglap5bbicdkbdl9l71wba2kkyhdyd0a4iqdz3l2jvv698"; }; electron = electron_9; diff --git a/pkgs/applications/networking/instant-messengers/element/element-web.nix b/pkgs/applications/networking/instant-messengers/element/element-web.nix index 25e62423eae..0d3e771630f 100644 --- a/pkgs/applications/networking/instant-messengers/element/element-web.nix +++ b/pkgs/applications/networking/instant-messengers/element/element-web.nix @@ -12,11 +12,11 @@ let in stdenv.mkDerivation rec { pname = "element-web"; - version = "1.7.9"; + version = "1.7.12"; src = fetchurl { url = "https://github.com/vector-im/riot-web/releases/download/v${version}/riot-v${version}.tar.gz"; - sha256 = "00ch486npqgrwmgfd7bsi6wb9ac6dpv08n13lygn45gha37l1kx1"; + sha256 = "173hdg09cw13vqh0lvz6kl0mq4i3rsacjxhspkpydh2qd1g3hjrs"; }; installPhase = '' diff --git a/pkgs/applications/networking/instant-messengers/ferdi/default.nix b/pkgs/applications/networking/instant-messengers/ferdi/default.nix index e0f56e2783d..190050d8327 100644 --- a/pkgs/applications/networking/instant-messengers/ferdi/default.nix +++ b/pkgs/applications/networking/instant-messengers/ferdi/default.nix @@ -9,7 +9,7 @@ mkFranzDerivation rec { sha256 = "0i24vcnq4iz5amqmn2fgk92ff9x9y7fg8jhc3g6ksvmcfly7af3k"; }; meta = with stdenv.lib; { - description = "Ferdi allows you to combine your favorite messaging services into one application"; + description = "Combine your favorite messaging services into one application"; homepage = "https://getferdi.com/"; license = licenses.free; maintainers = [ maintainers.davidtwco ]; diff --git a/pkgs/applications/networking/instant-messengers/gajim/default.nix b/pkgs/applications/networking/instant-messengers/gajim/default.nix index 2ee017dfdba..eef24f75f15 100644 --- a/pkgs/applications/networking/instant-messengers/gajim/default.nix +++ b/pkgs/applications/networking/instant-messengers/gajim/default.nix @@ -60,6 +60,9 @@ python3.pkgs.buildPythonApplication rec { ${python3.interpreter} setup.py test ''; + # necessary for wrapGAppsHook + strictDeps = false; + meta = { homepage = "http://gajim.org/"; description = "Jabber client written in PyGTK"; diff --git a/pkgs/applications/networking/instant-messengers/gomuks/default.nix b/pkgs/applications/networking/instant-messengers/gomuks/default.nix index c98fd9e8040..00134e2597b 100644 --- a/pkgs/applications/networking/instant-messengers/gomuks/default.nix +++ b/pkgs/applications/networking/instant-messengers/gomuks/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "gomuks"; - version = "0.2.0"; + version = "0.2.1"; src = fetchFromGitHub { owner = "tulir"; repo = pname; rev = "v" + version; - sha256 = "0sf1nqwimxqql8wm6763jyc5rclhd4zxgg9gfi0qvg5ccm1r1z5q"; + sha256 = "0xa4ch4p48w6sd0f4s1sp0hl1w4fvzhff7w2ar19ki0ydy5g368n"; }; - vendorSha256 = "sha256:0n9mwbzjkvlljlns7sby8nb9gm4vj0v4idp1zxv5xssqr5qalihf"; + vendorSha256 = "1rhvwk8bdbbffhx2d03a8p9jc5c8v3pi7kw1dmyyngz6p7wq1g0x"; doCheck = false; diff --git a/pkgs/applications/networking/instant-messengers/mirage/default.nix b/pkgs/applications/networking/instant-messengers/mirage/default.nix index 1101d6f9b06..0aa2dbf889b 100644 --- a/pkgs/applications/networking/instant-messengers/mirage/default.nix +++ b/pkgs/applications/networking/instant-messengers/mirage/default.nix @@ -47,7 +47,7 @@ mkDerivation rec { ''; meta = with lib; { - description = "A fancy, customizable, keyboard-operable Qt/QML+Python Matrix chat client for encrypted and decentralized communication."; + description = "A fancy, customizable, keyboard-operable Qt/QML+Python Matrix chat client for encrypted and decentralized communication"; homepage = "https://github.com/mirukana/mirage"; license = licenses.lgpl3; maintainers = with maintainers; [ colemickens ]; diff --git a/pkgs/applications/networking/instant-messengers/pantalaimon/default.nix b/pkgs/applications/networking/instant-messengers/pantalaimon/default.nix index a751501376f..3b1fb255b6e 100644 --- a/pkgs/applications/networking/instant-messengers/pantalaimon/default.nix +++ b/pkgs/applications/networking/instant-messengers/pantalaimon/default.nix @@ -56,7 +56,7 @@ buildPythonApplication rec { ''; meta = with lib; { - description = "An end-to-end encryption aware Matrix reverse proxy daemon."; + description = "An end-to-end encryption aware Matrix reverse proxy daemon"; homepage = "https://github.com/matrix-org/pantalaimon"; license = licenses.asl20; maintainers = with maintainers; [ valodim ]; diff --git a/pkgs/applications/networking/instant-messengers/psi/default.nix b/pkgs/applications/networking/instant-messengers/psi/default.nix index c1984a218c8..9f841f50dac 100644 --- a/pkgs/applications/networking/instant-messengers/psi/default.nix +++ b/pkgs/applications/networking/instant-messengers/psi/default.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { ]; enableParallelBuilding = true; meta = with stdenv.lib; { - description = "Psi, an XMPP (Jabber) client"; + description = "An XMPP (Jabber) client"; maintainers = [ maintainers.raskin ]; license = licenses.gpl2; platforms = stdenv.lib.platforms.linux; diff --git a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix index 85f71fd0ebc..5603ff13b19 100644 --- a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix @@ -25,7 +25,7 @@ let else ""); in stdenv.mkDerivation rec { pname = "signal-desktop"; - version = "1.36.3"; # Please backport all updates to the stable channel. + version = "1.37.2"; # Please backport all updates to the stable channel. # All releases have a limited lifetime and "expire" 90 days after the release. # When releases "expire" the application becomes unusable until an update is # applied. The expiration date for the current release can be extracted with: @@ -35,7 +35,7 @@ in stdenv.mkDerivation rec { src = fetchurl { url = "https://updates.signal.org/desktop/apt/pool/main/s/signal-desktop/signal-desktop_${version}_amd64.deb"; - sha256 = "1b75b5li0im2mwskkf1xsa6sjprl56isvcz2iy1gc48bambc72pc"; + sha256 = "0n4g2fh1ibw6fl5vbnnchx2vafasqrq8rl9w0ch7lai665zkxsk3"; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/instant-messengers/skypeforlinux/default.nix b/pkgs/applications/networking/instant-messengers/skypeforlinux/default.nix index bc5fa0e1f12..b7aa2d845b1 100644 --- a/pkgs/applications/networking/instant-messengers/skypeforlinux/default.nix +++ b/pkgs/applications/networking/instant-messengers/skypeforlinux/default.nix @@ -7,7 +7,7 @@ let # Please keep the version x.y.0.z and do not update to x.y.76.z because the # source of the latter disappears much faster. - version = "8.64.0.81"; + version = "8.65.0.78"; rpath = stdenv.lib.makeLibraryPath [ alsaLib @@ -65,7 +65,7 @@ let "https://mirror.cs.uchicago.edu/skype/pool/main/s/skypeforlinux/skypeforlinux_${version}_amd64.deb" "https://web.archive.org/web/https://repo.skype.com/deb/pool/main/s/skypeforlinux/skypeforlinux_${version}_amd64.deb" ]; - sha256 = "0p6sp45kabm97p3hp3wp087b3k42m26ji99kzhpsz3n9vzjiczjh"; + sha256 = "04qcpz3w2clpa23axh0xx68rm792d2l029r3wy1hfzbxd51z09lh"; } else throw "Skype for linux is not supported on ${stdenv.hostPlatform.system}"; diff --git a/pkgs/applications/networking/instant-messengers/spectral/default.nix b/pkgs/applications/networking/instant-messengers/spectral/default.nix index 23659e8a6c9..b0819ade4f3 100644 --- a/pkgs/applications/networking/instant-messengers/spectral/default.nix +++ b/pkgs/applications/networking/instant-messengers/spectral/default.nix @@ -31,7 +31,7 @@ in stdenv.mkDerivation rec { ++ stdenv.lib.optional stdenv.hostPlatform.isDarwin qtmacextras; meta = with stdenv.lib; { - description = "A glossy cross-platform Matrix client."; + description = "A glossy cross-platform Matrix client"; homepage = "https://spectral.im"; license = licenses.gpl3; platforms = with platforms; linux ++ darwin; diff --git a/pkgs/applications/networking/instant-messengers/ssh-chat/default.nix b/pkgs/applications/networking/instant-messengers/ssh-chat/default.nix index 5806a269104..e964c654c70 100644 --- a/pkgs/applications/networking/instant-messengers/ssh-chat/default.nix +++ b/pkgs/applications/networking/instant-messengers/ssh-chat/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { pname = "ssh-chat"; - version = "1.9"; + version = "1.10"; goPackagePath = "github.com/shazow/ssh-chat"; @@ -10,7 +10,7 @@ buildGoPackage rec { owner = "shazow"; repo = "ssh-chat"; rev = "v${version}"; - sha256 = "04yszan6a7x9498s80xymf7wd10530yjrxcdw4czbplyhjdigxlg"; + sha256 = "e4COAyheY+mE5zltR1Ms2OJ3I8iG/N1CZ6D7I9PDW5U="; }; goDeps = ./deps.nix; diff --git a/pkgs/applications/networking/instant-messengers/teams/default.nix b/pkgs/applications/networking/instant-messengers/teams/default.nix index d58e27cc62b..f1a2c137ad2 100644 --- a/pkgs/applications/networking/instant-messengers/teams/default.nix +++ b/pkgs/applications/networking/instant-messengers/teams/default.nix @@ -15,11 +15,11 @@ stdenv.mkDerivation rec { pname = "teams"; - version = "1.3.00.16851"; + version = "1.3.00.25560"; src = fetchurl { url = "https://packages.microsoft.com/repos/ms-teams/pool/main/t/teams/teams_${version}_amd64.deb"; - sha256 = "1mp4xq224nwv2ckb5zd7iv3yvkg3gv6mk9dvx3f60jgain7qr0r3"; + sha256 = "0kpcd9q6v2qh0dzddykisdbi3djbxj2rl70wchlzrb6bx95hkzmc"; }; nativeBuildInputs = [ dpkg autoPatchelfHook wrapGAppsHook ]; @@ -50,6 +50,10 @@ stdenv.mkDerivation rec { --replace /usr/bin/ $out/bin/ ln -s $out/opt/teams/teams $out/bin/ + + # Work-around screen sharing bug + # https://docs.microsoft.com/en-us/answers/questions/42095/sharing-screen-not-working-anymore-bug.html + rm $out/opt/teams/resources/app.asar.unpacked/node_modules/slimcore/bin/rect-overlay ''; dontAutoPatchelf = true; diff --git a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix index 7e932d74abc..379922ee585 100644 --- a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix @@ -1,5 +1,5 @@ -{ mkDerivation, lib, fetchurl, fetchsvn -, pkgconfig, cmake, ninja, python3, wrapGAppsHook, wrapQtAppsHook +{ mkDerivation, lib, fetchurl, callPackage +, pkgconfig, cmake, ninja, python3, wrapGAppsHook, wrapQtAppsHook, removeReferencesTo , qtbase, qtimageformats, gtk3, libsForQt5, enchant2, lz4, xxHash , dee, ffmpeg, openalSoft, minizip, libopus, alsaLib, libpulseaudio, range-v3 , tl-expected, hunspell @@ -17,14 +17,17 @@ with lib; # - https://git.alpinelinux.org/aports/tree/testing/telegram-desktop/APKBUILD # - https://github.com/void-linux/void-packages/blob/master/srcpkgs/telegram-desktop/template -mkDerivation rec { +let + tg_owt = callPackage ./tg_owt.nix {}; + +in mkDerivation rec { pname = "telegram-desktop"; - version = "2.3.0"; + version = "2.4.4"; # Telegram-Desktop with submodules src = fetchurl { url = "https://github.com/telegramdesktop/tdesktop/releases/download/v${version}/tdesktop-${version}-full.tar.gz"; - sha256 = "0yga4p36jrc5m3d8q2y2g0505c2v540w5hgcscapl4xj9hyb21dw"; + sha256 = "09lhikaybf57rki62miqcaxxrdg1ni2rj9aj4w9mrbzdv849fyc8"; }; postPatch = '' @@ -38,12 +41,13 @@ mkDerivation rec { dontWrapGApps = true; dontWrapQtApps = true; - nativeBuildInputs = [ pkgconfig cmake ninja python3 wrapGAppsHook wrapQtAppsHook ]; + nativeBuildInputs = [ pkgconfig cmake ninja python3 wrapGAppsHook wrapQtAppsHook removeReferencesTo ]; buildInputs = [ qtbase qtimageformats gtk3 libsForQt5.libdbusmenu enchant2 lz4 xxHash dee ffmpeg openalSoft minizip libopus alsaLib libpulseaudio range-v3 tl-expected hunspell + tg_owt # TODO: Shouldn't be required: pcre xorg.libpthreadstubs xorg.libXdmcp utillinux libselinux libsepol epoxy at-spi2-core libXtst ]; @@ -55,12 +59,6 @@ mkDerivation rec { # We're allowed to used the API ID of the Snap package: "-DTDESKTOP_API_ID=611335" "-DTDESKTOP_API_HASH=d524b414d21f4d37f08684c1df41ac9c" - "-DDESKTOP_APP_USE_PACKAGED_RLOTTIE=OFF" - "-DDESKTOP_APP_USE_PACKAGED_VARIANT=OFF" - "-DDESKTOP_APP_USE_PACKAGED_GSL=OFF" - "-DTDESKTOP_DISABLE_REGISTER_CUSTOM_SCHEME=ON" - "-DTDESKTOP_USE_PACKAGED_TGVOIP=OFF" - "-DDESKTOP_APP_DISABLE_WEBRTC_INTEGRATION=ON" #"-DDESKTOP_APP_SPECIAL_TARGET=\"\"" # TODO: Error when set to "": Bad special target '""' "-DTDESKTOP_LAUNCHER_BASENAME=telegramdesktop" # Note: This is the default ]; @@ -82,6 +80,9 @@ mkDerivation rec { # TODO: Package mapbox-variant postFixup = '' + # Nuke refs to `tg_owt` which is introduced by `__FILE__` in headers. + remove-references-to -t ${tg_owt} $out/bin/telegram-desktop + # This is necessary to run Telegram in a pure environment. # We also use gappsWrapperArgs from wrapGAppsHook. wrapProgram $out/bin/telegram-desktop \ @@ -93,6 +94,10 @@ mkDerivation rec { -e "s,'XDG-RUNTIME-DIR',\"\''${XDG_RUNTIME_DIR:-/run/user/\$(id --user)}\"," ''; + passthru = { + inherit tg_owt; + }; + meta = { description = "Telegram Desktop messaging app"; longDescription = '' diff --git a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/tg_owt-install.patch b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/tg_owt-install.patch new file mode 100644 index 00000000000..bc8a23eb31e --- /dev/null +++ b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/tg_owt-install.patch @@ -0,0 +1,159 @@ +diff --git a/CMakeLists.txt b/CMakeLists.txt +index 6fbc0da..6cbff3c 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -1856,3 +1856,41 @@ configure_file( + "${CMAKE_CURRENT_BINARY_DIR}/tg_owtConfig.cmake" + COPYONLY + ) ++ ++install( ++TARGETS ++ tg_owt ++ libabsl ++ libopenh264 ++ libpffft ++ librnnoise ++ libsrtp ++ libusrsctp ++ libvpx ++ ${vpx_export} ++ libwebrtcbuild ++ libyuv ++ ${platform_export} ++EXPORT tg_owtTargets ++RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} ++ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR} ++LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR} ++INCLUDES DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} ++) ++ ++install( ++ DIRECTORY ${CMAKE_CURRENT_LIST_DIR}/src/ ++ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} ++ FILES_MATCHING PATTERN "*.h" ++) ++ ++install( ++ EXPORT tg_owtTargets ++ NAMESPACE tg_owt:: ++ DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/tg_owt ++) ++ ++install( ++ FILES ${CMAKE_CURRENT_BINARY_DIR}/tg_owtConfig.cmake ++ DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/tg_owt ++) +diff --git a/cmake/libabsl.cmake b/cmake/libabsl.cmake +index 2fb3b8c..4a4f85b 100644 +--- a/cmake/libabsl.cmake ++++ b/cmake/libabsl.cmake +@@ -123,5 +123,6 @@ PRIVATE + + target_include_directories(libabsl + PUBLIC +- ${libabsl_loc} ++ $ ++ $ + ) +diff --git a/cmake/libpffft.cmake b/cmake/libpffft.cmake +index a6ceb3e..435d3a3 100644 +--- a/cmake/libpffft.cmake ++++ b/cmake/libpffft.cmake +@@ -24,5 +24,6 @@ endif() + + target_include_directories(libpffft + PUBLIC +- ${libpffft_loc} ++ $ ++ $ + ) +diff --git a/cmake/libsrtp.cmake b/cmake/libsrtp.cmake +index 57c54b5..26b3466 100644 +--- a/cmake/libsrtp.cmake ++++ b/cmake/libsrtp.cmake +@@ -30,6 +30,8 @@ PRIVATE + + target_include_directories(libsrtp + PUBLIC +- ${libsrtp_loc}/include +- ${libsrtp_loc}/crypto/include ++ $ ++ $ ++ $ ++ $ + ) +diff --git a/cmake/libusrsctp.cmake b/cmake/libusrsctp.cmake +index caa0529..38d2ef6 100644 +--- a/cmake/libusrsctp.cmake ++++ b/cmake/libusrsctp.cmake +@@ -67,6 +67,8 @@ endif() + + target_include_directories(libusrsctp + PUBLIC +- ${third_party_loc}/usrsctp/usrsctplib +- ${libusrsctp_loc} ++ $ ++ $ ++ $ ++ $ + ) +diff --git a/cmake/libvpx.cmake b/cmake/libvpx.cmake +index e192e7e..78cf25b 100644 +--- a/cmake/libvpx.cmake ++++ b/cmake/libvpx.cmake +@@ -68,6 +68,11 @@ else() + set(ASM_SUFFIX ".asm.S") + endif() + ++foreach(dir ${include_directories}) ++ string(REPLACE ${libvpx_loc} include/third_party/libvpx install_include_dir ${dir}) ++ list(APPEND install_include_directories ${install_include_dir}) ++endforeach() ++ + function(add_sublibrary postfix) + add_library(libvpx_${postfix} OBJECT) + init_feature_target(libvpx_${postfix} ${postfix}) +@@ -75,6 +80,8 @@ function(add_sublibrary postfix) + target_include_directories(libvpx_${postfix} + PRIVATE + ${include_directories} ++ "$" ++ "$" + ) + set(sources_list ${ARGV}) + list(REMOVE_AT sources_list 0) +@@ -725,5 +732,6 @@ endif() + + target_include_directories(libvpx + PUBLIC +- ${include_directories} ++ "$" ++ "$" + ) +diff --git a/cmake/libwebrtcbuild.cmake b/cmake/libwebrtcbuild.cmake +index c3520b8..9b4b543 100644 +--- a/cmake/libwebrtcbuild.cmake ++++ b/cmake/libwebrtcbuild.cmake +@@ -44,5 +44,6 @@ endif() + + target_include_directories(libwebrtcbuild + INTERFACE +- ${webrtc_loc} ++ $ ++ $ + ) +diff --git a/cmake/libyuv.cmake b/cmake/libyuv.cmake +index ebfc6f0..18e70ef 100644 +--- a/cmake/libyuv.cmake ++++ b/cmake/libyuv.cmake +@@ -126,7 +126,8 @@ endif() + + target_include_directories(libyuv + PUBLIC +- ${libyuv_loc}/include ++ $ ++ $ + ) + + target_compile_definitions(libyuv diff --git a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/tg_owt.nix b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/tg_owt.nix new file mode 100644 index 00000000000..47e9b6787e3 --- /dev/null +++ b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/tg_owt.nix @@ -0,0 +1,26 @@ +{ lib, stdenv, fetchFromGitHub, cmake, ninja, yasm +, pkg-config, libjpeg, openssl, libopus, ffmpeg, alsaLib, libpulseaudio +}: + +let + rev = "c73a4718cbff7048373a63db32068482e5fd11ef"; + sha256 = "0nr20mvvmmg8ii8f2rljd7iv2szplcfjn40rpy6llkmf705mwr1k"; + +in stdenv.mkDerivation { + pname = "tg_owt"; + version = "git-${rev}"; + + src = fetchFromGitHub { + owner = "desktop-app"; + repo = "tg_owt"; + inherit rev sha256; + }; + + patches = [ ./tg_owt-install.patch ]; + + nativeBuildInputs = [ pkg-config cmake ninja yasm ]; + + buildInputs = [ libjpeg openssl libopus ffmpeg alsaLib libpulseaudio ]; + + meta.license = lib.licenses.bsd3; +} diff --git a/pkgs/applications/networking/instant-messengers/zoom-us/default.nix b/pkgs/applications/networking/instant-messengers/zoom-us/default.nix index 3109db89ff3..6c072118bc8 100644 --- a/pkgs/applications/networking/instant-messengers/zoom-us/default.nix +++ b/pkgs/applications/networking/instant-messengers/zoom-us/default.nix @@ -15,11 +15,11 @@ assert pulseaudioSupport -> libpulseaudio != null; let inherit (stdenv.lib) concatStringsSep makeBinPath optional; - version = "5.3.469451.0927"; + version = "5.4.53350.1027"; srcs = { x86_64-linux = fetchurl { url = "https://zoom.us/client/${version}/zoom_x86_64.tar.xz"; - sha256 = "0qb9jx2zd5p6jk1g0xmh1f6xlf4gfl38ns6ixpc653qfimy8b0av"; + sha256 = "11va3px42y81bwy10mxm7mk0kf2sni9gwb422pq9djck2dgchw5x"; }; }; diff --git a/pkgs/applications/networking/irc/communi/default.nix b/pkgs/applications/networking/irc/communi/default.nix index 6cb6f2c2ef6..f3a840e23d0 100644 --- a/pkgs/applications/networking/irc/communi/default.nix +++ b/pkgs/applications/networking/irc/communi/default.nix @@ -19,16 +19,17 @@ stdenv.mkDerivation rec { preConfigure = '' export QMAKEFEATURES=${libcommuni}/features - qmakeFlags="$qmakeFlags \ - COMMUNI_INSTALL_PREFIX=$out \ - COMMUNI_INSTALL_BINS=$out/bin \ - COMMUNI_INSTALL_PLUGINS=$out/lib/communi/plugins \ - COMMUNI_INSTALL_ICONS=$out/share/icons/hicolor \ - COMMUNI_INSTALL_DESKTOP=$out/share/applications \ - COMMUNI_INSTALL_THEMES=$out/share/communi/themes - " ''; + qmakeFlags = [ + "COMMUNI_INSTALL_PREFIX=${placeholder "out"}" + "COMMUNI_INSTALL_BINS=${placeholder "out"}/bin" + "COMMUNI_INSTALL_PLUGINS=${placeholder "out"}/lib/communi/plugins" + "COMMUNI_INSTALL_ICONS=${placeholder "out"}/share/icons/hicolor" + "COMMUNI_INSTALL_DESKTOP=${placeholder "out"}/share/applications" + "COMMUNI_INSTALL_THEMES=${placeholder "out"}/share/communi/themes" + ]; + postInstall = stdenv.lib.optionalString stdenv.isLinux '' substituteInPlace "$out/share/applications/communi.desktop" \ --replace "/usr/bin" "$out/bin" diff --git a/pkgs/applications/networking/mailreaders/aerc/default.nix b/pkgs/applications/networking/mailreaders/aerc/default.nix index 9a607b54b9c..45d41839a1c 100644 --- a/pkgs/applications/networking/mailreaders/aerc/default.nix +++ b/pkgs/applications/networking/mailreaders/aerc/default.nix @@ -54,7 +54,7 @@ buildGoModule rec { ''; meta = with stdenv.lib; { - description = "aerc is an email client for your terminal"; + description = "An email client for your terminal"; homepage = "https://aerc-mail.org/"; maintainers = with maintainers; [ tadeokondrak ]; license = licenses.mit; diff --git a/pkgs/applications/networking/mailreaders/alpine/default.nix b/pkgs/applications/networking/mailreaders/alpine/default.nix index a85e4e4d04c..83c2f3ca7ac 100644 --- a/pkgs/applications/networking/mailreaders/alpine/default.nix +++ b/pkgs/applications/networking/mailreaders/alpine/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { pname = "alpine"; - version = "2.23"; + version = "2.24"; src = fetchurl { url = "http://alpine.x10host.com/alpine/release/src/${pname}-${version}.tar.xz"; - sha256 = "0yqzm56lqgg8v66m09vqxjvpclli4pql5xj8zg7mynq0bhhn2fkr"; + sha256 = "1vxw19nx10y7nx01d9i6gah2f3y5r2idbq56l13bdqi91bx9y6k5"; }; buildInputs = [ diff --git a/pkgs/applications/networking/mailreaders/evolution/evolution-ews/default.nix b/pkgs/applications/networking/mailreaders/evolution/evolution-ews/default.nix index 26d8fb1aab8..d3f5988b474 100644 --- a/pkgs/applications/networking/mailreaders/evolution/evolution-ews/default.nix +++ b/pkgs/applications/networking/mailreaders/evolution/evolution-ews/default.nix @@ -40,7 +40,7 @@ stdenv.mkDerivation rec { }; meta = with stdenv.lib; { - description = "Evolution connector for Microsoft Exchange Server protocols."; + description = "Evolution connector for Microsoft Exchange Server protocols"; homepage = "https://gitlab.gnome.org/GNOME/evolution-ews"; license = "LGPL-2.1-only OR LGPL-3.0-only"; # https://gitlab.gnome.org/GNOME/evolution-ews/issues/111 maintainers = [ maintainers.dasj19 ]; diff --git a/pkgs/applications/networking/mailreaders/inboxer/default.nix b/pkgs/applications/networking/mailreaders/inboxer/default.nix index 189ac1e6aae..a11e5763699 100644 --- a/pkgs/applications/networking/mailreaders/inboxer/default.nix +++ b/pkgs/applications/networking/mailreaders/inboxer/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, binutils, patchelf, makeWrapper -, expat, xorg, gdk-pixbuf, glib, gnome2, cairo, atk, freetype +, expat, xorg, gdk-pixbuf, glib, gnome2, cairo, atk, freetype, pango , fontconfig, dbus, nss, nspr, gtk2-x11, alsaLib, cups, libpulseaudio, udev }: stdenv.mkDerivation rec { @@ -51,7 +51,7 @@ stdenv.mkDerivation rec { xorg.libxcb gdk-pixbuf glib - gnome2.pango + pango gnome2.GConf expat stdenv.cc.cc.lib diff --git a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix index 71f4f52af43..3ffd171295c 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix @@ -1,665 +1,665 @@ { - version = "78.3.2"; + version = "78.4.0"; sources = [ - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-x86_64/af/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-x86_64/af/thunderbird-78.4.0.tar.bz2"; locale = "af"; arch = "linux-x86_64"; - sha256 = "928a2aa2fefa53f088ca8122010732bf12ad660e6bd434cfa8062fd9450d6886"; + sha256 = "589fe4c9a7ceffb4d027f493e0b074647bb958a62046deef5b8268fd43e6aae9"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-x86_64/ar/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-x86_64/ar/thunderbird-78.4.0.tar.bz2"; locale = "ar"; arch = "linux-x86_64"; - sha256 = "fd7cda5dadb0233067e6ac1c19ea556fa0d4503ff04c0acaf75532bc149eabca"; + sha256 = "b94d46899a7458f9c94849db71975e0028004bf93d5b0695a454fbac24a41ec6"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-x86_64/ast/thunderbird-78.3.2.tar.bz2"; 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} - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/ja/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/ja/thunderbird-78.4.0.tar.bz2"; locale = "ja"; arch = "linux-i686"; - sha256 = "f4bd7f453e97f8647c95be13b9141d3a5ae9616c656da89af9805825105d0b38"; + sha256 = "ad1f9e091cfd66683964f8d683653b3134068174daf24fe061aad00d0c864176"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/ka/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/ka/thunderbird-78.4.0.tar.bz2"; locale = "ka"; arch = "linux-i686"; - sha256 = "d7bb492589f676319711227edcf413e0a8605b0361a107bb0bf57081f640ebce"; + sha256 = "9074e7b2eb10943f6b87e79be9ec9ae706eeb4300c85ffe456bb34f11798b81a"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/kab/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/kab/thunderbird-78.4.0.tar.bz2"; locale = "kab"; arch = "linux-i686"; - sha256 = "7f963664d38d0d8798bbcded7472cba761b8c0c87a83bb3829f5ca725151674f"; + sha256 = "7b7d17a26dc9914d46de8959c08d56ed92b263d3eae383ca71d45a1b37a9650f"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/kk/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/kk/thunderbird-78.4.0.tar.bz2"; locale = "kk"; arch = "linux-i686"; - sha256 = "9c95f44d25b57fd09c45b65ce5d4dd19d9ffb3c1999fb240376b152f1427e631"; + sha256 = "b38db92efa1b4bc1067eeee7eaf7307d6e86e6c6d3f4dd1b81496768c981d5af"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/ko/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/ko/thunderbird-78.4.0.tar.bz2"; locale = "ko"; arch = "linux-i686"; - sha256 = "f887280432dcef0606612e8abc1b7d7ff0b63776ead6d3c12c8be6d5f114c8cf"; + sha256 = "951a2e6e2cae525618646f8f054d127b32a535028930eeb3be7dfd2720c4ccea"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/lt/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/lt/thunderbird-78.4.0.tar.bz2"; locale = "lt"; arch = "linux-i686"; - sha256 = "08e427b38c00dc46c0f6cb4ea856f4b62ad8478cfdc75b24e4cfd453b6ad4e15"; + sha256 = "5e76866c25f63aa283e54c871e1014a10e4ecdb8182ca6bc3ac1d16a344ae8f8"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/ms/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/ms/thunderbird-78.4.0.tar.bz2"; locale = "ms"; arch = "linux-i686"; - sha256 = "dae2e31ee21de7d7bf4bc5bc3f45ce1f4ca650b7f45e47b7ae8d6c09800fb35a"; + sha256 = "74e28f4ed81a233bd8aa721515667b31e83f7a6d6bad0aaef421f1f1e4b0c4c9"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/nb-NO/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/nb-NO/thunderbird-78.4.0.tar.bz2"; locale = "nb-NO"; arch = "linux-i686"; - sha256 = "58199dcfbebbdcc122308140c128d56c6ca464e477c76c8ec39d22c6c444b6a9"; + sha256 = "4cfa6097b0879de04314773d96d3e03aee3b7e1680e97cee3dbb6fca9e4010ca"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/nl/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/nl/thunderbird-78.4.0.tar.bz2"; locale = "nl"; arch = "linux-i686"; - sha256 = "c62325f5e2718f9e28554a7df99c3c68376d9c8208a62345a913e176e0388510"; + sha256 = "e097065367e8bcaa331803c779ff71e43dfa7dcc5b516fd5d73f60b1c614c7a0"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/nn-NO/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/nn-NO/thunderbird-78.4.0.tar.bz2"; locale = "nn-NO"; arch = "linux-i686"; - sha256 = "f560d924bf9d267f231ff0869c0770d2216690f8944df79b417f1d53dc814bd5"; + sha256 = "e3bc6a3754f13db3dc5f70c3fd9b70b4250be494a47c7d20546dccb57b914ae5"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/pa-IN/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/pa-IN/thunderbird-78.4.0.tar.bz2"; locale = "pa-IN"; arch = "linux-i686"; - sha256 = "bbb256675969e68bfd0595dbe6a1c3096622f8fb818d08759e7c3d1648745b32"; + sha256 = "80a785335bd49d5d0e8c669a7d548c0e077c413c184eb50133aaf5790fe1148a"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/pl/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/pl/thunderbird-78.4.0.tar.bz2"; locale = "pl"; arch = "linux-i686"; - sha256 = "a6fbe42f3a0be3e4e3df2156d668e1ac83c2e58abdf55ddce1469a90e2cec9dc"; + sha256 = "bc20f221babef7c3a3992d57ab5a3afcad12faa0263ff8978c96a1267af54c28"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/pt-BR/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/pt-BR/thunderbird-78.4.0.tar.bz2"; locale = "pt-BR"; arch = "linux-i686"; - sha256 = "bbf82582f1c9b214e4f47bb1f4cc03a0df32d779a2d2f752bef3329540c321a0"; + sha256 = "6dd040a2046c418d51bd7103d93a50b58e3345de5ed0c8917c0a8a8c7bf87c7c"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/pt-PT/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/pt-PT/thunderbird-78.4.0.tar.bz2"; locale = "pt-PT"; arch = "linux-i686"; - sha256 = "3a5b00fd0a85cd5f613a8a98d8f41e8419335a9012e9f933e2adc7d2431e584a"; + sha256 = "45f67266e6af96dccae07d6db4f5d62c3d6d26e1a76e4951f08591c664122359"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/rm/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/rm/thunderbird-78.4.0.tar.bz2"; locale = "rm"; arch = "linux-i686"; - sha256 = "3f3ff94e6cffa497146590b7efa57e6051ff8b815fac50e3339eff1c7ec51e8b"; + sha256 = "1d53a7290332375212c0d58af23265d59502bce1a6a4629b56bc86d048be65a9"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/ro/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/ro/thunderbird-78.4.0.tar.bz2"; locale = "ro"; arch = "linux-i686"; - sha256 = "a9968a9b3e0c1323f9d08dc7efe31d77f0f5dacceceba1f9cdb737340b4a74c1"; + sha256 = "de3e5496ce5b8c4dff6fcbcf2b8a47b0c81d026fb5334e2668b8f9fc293c5216"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/ru/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/ru/thunderbird-78.4.0.tar.bz2"; locale = "ru"; arch = "linux-i686"; - sha256 = "e02d0d2b19787892b80ee987665e59129fd84d3f9c4e3cd139589cb41d25ae7a"; + sha256 = "838b9a02684541ef7df67a23b9966282ff9d8b12b64dfcbcfea8e8381b24951a"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/si/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/si/thunderbird-78.4.0.tar.bz2"; locale = "si"; arch = "linux-i686"; - sha256 = "bfd849787426abcdfdfc97933e4e9bb4360a96d1912d6c5f7f1ac6cd4d9370df"; + sha256 = "202f815bdf7538d50f4770e601d10c8a1ffddb042a3c7dfd1a1b65e9b5dc5ec6"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/sk/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/sk/thunderbird-78.4.0.tar.bz2"; locale = "sk"; arch = "linux-i686"; - sha256 = "855560f2af08f0ee27c658cbf755973b7333604c731d9442418e75fc1bf50fa2"; + sha256 = "44c5aa3723919798493e7f43c927ac48891eecf94a69c79b86be107984e9e068"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/sl/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/sl/thunderbird-78.4.0.tar.bz2"; locale = "sl"; arch = "linux-i686"; - sha256 = "6f40769e00da9228e806304edc63e5730126937dbec77bc91d92e27ff28c0c15"; + sha256 = "2d5125d9625f916788265db46ee1fb47ace3b6099dae26ecb734aecf36160949"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/sq/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/sq/thunderbird-78.4.0.tar.bz2"; locale = "sq"; arch = "linux-i686"; - sha256 = "067738a24e3f541d8e8c4515570ea61c5f17e95bcc4f61aff29db7e43f916106"; + sha256 = "2aa337b0fd8ccfe86feadef605ca863499f21c3ca7f194121064fc060d5a3de7"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/sr/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/sr/thunderbird-78.4.0.tar.bz2"; locale = "sr"; arch = "linux-i686"; - sha256 = "f067575a282cf0e59e87b9b6eed247d697249e181febe1713bde8555adc17cbd"; + sha256 = "fe690670c6702ed63684eac68a3f3f29f12bd27af7d34c63af768e0362a1eb11"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/sv-SE/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/sv-SE/thunderbird-78.4.0.tar.bz2"; locale = "sv-SE"; arch = "linux-i686"; - sha256 = "c7c80cea8b8196da0bd13de4320715f14cce50a1bb9d5a529dc6c1ad48ec9535"; + sha256 = "74525ce44ca330e8fd29785842992c62cf3b5494675ec9a8148ea14d945fcaae"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/th/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/th/thunderbird-78.4.0.tar.bz2"; locale = "th"; arch = "linux-i686"; - sha256 = "667fc7175767cd7383cfe29e0774d5b302cead6670edc28032aadf1404d4ffbe"; + sha256 = "0503e2ed79dae95302bf2d9d8055589ed1ca511c16c35a9b84445548a7a306d4"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/tr/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/tr/thunderbird-78.4.0.tar.bz2"; locale = "tr"; arch = "linux-i686"; - sha256 = "b41831259a05028054c80378f30cd3edd8b1cee012d7045b34d2a62f38ea4980"; + sha256 = "c4b14f4f22549c66f5f445a2ad5826d0e90332c9d76783851078625245625bbb"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/uk/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/uk/thunderbird-78.4.0.tar.bz2"; locale = "uk"; arch = "linux-i686"; - sha256 = "c7ec76e5052c7a0b91a37bfa889a23c43503a5da5d672af2faf529e3bb626adf"; + sha256 = "cf06114027f9bf14ef506fe37e6a7ef6a1cbdb201cde061a754c82d9b3ef0c39"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/uz/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/uz/thunderbird-78.4.0.tar.bz2"; locale = "uz"; arch = "linux-i686"; - sha256 = "c6b95124196c7865cc2d4f04a32e3bccad4a6d57ec8c9b4a4477f6cef2cc8d69"; + sha256 = "c805d88694b105412f05dd840e038edfef90b4a48b5a79b0bac5b5575d50a14a"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/vi/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/vi/thunderbird-78.4.0.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha256 = "e20fce086298932fa45bf8627a2306e160395e9302b7c5b48092a8dbd2f78f2f"; + sha256 = "ca30574d981964eed7c3a100dd76f90c518a24d7dcde74f0790ede4a0a8d3285"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/zh-CN/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/zh-CN/thunderbird-78.4.0.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha256 = "b5a9e98af41d24d12ab111356c035769c71ddd3d9a79a959584d4ae11ca8f706"; + sha256 = "6cb1566d330e36b03e86bcfe96ad887fee511ba314167d235facba6c47871688"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.3.2/linux-i686/zh-TW/thunderbird-78.3.2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/78.4.0/linux-i686/zh-TW/thunderbird-78.4.0.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha256 = "9978aa31d4ef744921e43a116cdc2deead358f7db368ee64e90d37119819a4fc"; + sha256 = "7af0d92565a54bef6c962dd8b9b100198e2cac8d47ede749bade87c30d5ee37b"; } ]; } diff --git a/pkgs/applications/networking/mailreaders/thunderbird/default.nix b/pkgs/applications/networking/mailreaders/thunderbird/default.nix index dc2916eea87..7494c113805 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird/default.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird/default.nix @@ -70,13 +70,13 @@ assert waylandSupport -> gtk3Support == true; stdenv.mkDerivation rec { pname = "thunderbird"; - version = "78.3.2"; + version = "78.4.0"; src = fetchurl { url = "mirror://mozilla/thunderbird/releases/${version}/source/thunderbird-${version}.source.tar.xz"; sha512 = - "3c5b9400k3nrlabr2cvm5s3nz4ngy9qnz0j44mczh67v5xsmxi1hks8dx75s8sbbhnzmg0id4vlxfwd7i259p2xc039nkzkahmfn2wc"; + "04b6n3gsan0a5abh371ws3c3rry4dcb3c6rbqmcxkzrdjg2xr5vn6xhlg3dgl3l01p0hp1xqpckj8g5yb2dq2x07xgg1hnyhs9aadh5"; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/mkchromecast/default.nix b/pkgs/applications/networking/mkchromecast/default.nix new file mode 100644 index 00000000000..34f5be71ef3 --- /dev/null +++ b/pkgs/applications/networking/mkchromecast/default.nix @@ -0,0 +1,84 @@ +{ stdenv +, fetchFromGitHub +, python3Packages +, sox +, flac +, lame +, wrapQtAppsHook +, ffmpeg +, vorbis-tools +, pulseaudio +, nodejs +, youtube-dl +, opusTools +, gst_all_1 +}: +let packages = [ + vorbis-tools + sox + flac + lame + opusTools + gst_all_1.gstreamer + nodejs + ffmpeg + youtube-dl +] ++ stdenv.lib.optionals stdenv.isLinux [ pulseaudio ]; + +in +python3Packages.buildPythonApplication rec { + pname = "mkchromecast-unstable"; + version = "2020-10-17"; + + src = fetchFromGitHub rec { + owner = "muammar"; + repo = "mkchromecast"; + rev = "eb9da74d887acd70ed179e6e4c0cbed4ff83de04"; + sha256 = "1l565n3rmyghc4vzh80gazvdks1i97j1h94x33pkmxxlf9a9rncj"; + }; + + propagatedBuildInputs = with python3Packages; [ + PyChromecast + psutil + mutagen + flask + netifaces + requests + pyqt5 + ]; + + postPatch = '' + substituteInPlace setup.py \ + --replace 'platform.system() == "Darwin"' 'False' \ + --replace 'platform.system() == "Linux"' 'True' + ''; + + nativeBuildInputs = [ wrapQtAppsHook ]; + + # Relies on an old version (0.7.7) of PyChromecast unavailable in Nixpkgs. + # Is also I/O bound and impure, testing an actual device, so we disable. + doCheck = false; + + dontWrapQtApps = true; + + makeWrapperArgs = [ + "\${qtWrapperArgs[@]}" + "--prefix PATH : ${stdenv.lib.makeBinPath packages}" + ]; + + postInstall = '' + substituteInPlace $out/lib/${python3Packages.python.libPrefix}/site-packages/mkchromecast/video.py \ + --replace '/usr/share/mkchromecast/nodejs/' '${placeholder "out"}/share/mkchromecast/nodejs/' + '' + stdenv.lib.optionalString stdenv.isDarwin '' + install -Dm 755 -t $out/bin bin/audiodevice + substituteInPlace $out/lib/${python3Packages.python.libPrefix}/site-packages/mkchromecast/audio_devices.py \ + --replace './bin/audiodevice' '${placeholder "out"}/bin/audiodevice' + ''; + + meta = with stdenv.lib; { + homepage = "https://mkchromecast.com/"; + description = "Cast macOS and Linux Audio/Video to your Google Cast and Sonos Devices"; + license = licenses.mit; + maintainers = with maintainers; [ shou ]; + }; +} diff --git a/pkgs/applications/networking/mullvad-vpn/default.nix b/pkgs/applications/networking/mullvad-vpn/default.nix index aa7aaab29ac..52adbca18b1 100644 --- a/pkgs/applications/networking/mullvad-vpn/default.nix +++ b/pkgs/applications/networking/mullvad-vpn/default.nix @@ -41,11 +41,11 @@ in stdenv.mkDerivation rec { pname = "mullvad-vpn"; - version = "2020.5"; + version = "2020.6"; src = fetchurl { url = "https://www.mullvad.net/media/app/MullvadVPN-${version}_amd64.deb"; - sha256 = "131z6qlpjwxcn5a62f1f147f2z1xg185jmr0vbin8h0dwa1182vn"; + sha256 = "0d9rv874avx86jppl1dky0nfq1633as0z8yz3h3f69nhmcbwhlr3"; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/mumble/default.nix b/pkgs/applications/networking/mumble/default.nix index c205f18e366..fd2fb4a8fb7 100644 --- a/pkgs/applications/networking/mumble/default.nix +++ b/pkgs/applications/networking/mumble/default.nix @@ -133,14 +133,14 @@ let } source; source = rec { - version = "1.3.2"; + version = "1.3.3"; # Needs submodules src = fetchFromGitHub { owner = "mumble-voip"; repo = "mumble"; rev = version; - sha256 = "1ljn7h7dr9iyhvq7rdh0prl7hzn9d2hhnxv0ni6dha6f7d9qbfy6"; + sha256 = "1jaq5bl5gdpzd4pskpcd2j93g2w320znn4s8ck8f4jz5f46da1bj"; fetchSubmodules = true; }; }; diff --git a/pkgs/applications/networking/nym/default.nix b/pkgs/applications/networking/nym/default.nix index 4dfe1dc5492..d85266f68d6 100644 --- a/pkgs/applications/networking/nym/default.nix +++ b/pkgs/applications/networking/nym/default.nix @@ -9,16 +9,25 @@ rustPlatform.buildRustPackage rec { pname = "nym"; - version = "0.7.0"; + version = "0.8.1"; src = fetchFromGitHub { owner = "nymtech"; repo = "nym"; rev = "v${version}"; - sha256 = "05bxrpqwwf9spydac0q8sly65q8f1nk13i5fy3p5adr1phzxdnr8"; + sha256 = "0wzk9qzjyax73lfjbbag412vw1fgk2wmhhry5hdlvdbkim42m5bn"; }; - cargoSha256 = "0mh8cwia86bm68b0wcrmnsq1af5cp6kj1j81nwxb03awnqpxc34n"; + # fix outdated Cargo.lock + cargoPatches = [ (writeText "fix-nym-cargo-lock.patch" '' + --- a/Cargo.lock + +++ b/Cargo.lock + @@ -1826 +1826 @@ + -version = "0.8.0" + +version = "0.8.1" + '') ]; + + cargoSha256 = "0zr5nzmglmvn6xfqgvipbzy8nw5cl3nf7zjmghkqdwi6zj9p9272"; nativeBuildInputs = [ pkgconfig ]; @@ -26,20 +35,6 @@ rustPlatform.buildRustPackage rec { checkType = "debug"; - /* - Nym's test presence::converting_mixnode_presence_into_topology_mixnode::it_returns_resolved_ip_on_resolvable_hostname tries to resolve nymtech.net. - Since there is no external DNS resolution available in the build sandbox, we point cargo and its children (that's what we remove the 'unsetenv' call for) to a hosts file in which we statically resolve nymtech.net. - */ - preCheck = '' - export LD_PRELOAD=${libredirect.overrideAttrs (drv: { - postPatch = "sed -i -e /unsetenv/d libredirect.c"; - })}/lib/libredirect.so - export NIX_REDIRECTS=/etc/hosts=${writeText "nym_resolve_test_hosts" "127.0.0.1 nymtech.net"} - ''; - - postCheck = "unset NIX_REDIRECTS LD_PRELOAD"; - - passthru.updateScript = ./update.sh; meta = with lib; { diff --git a/pkgs/applications/networking/omping/default.nix b/pkgs/applications/networking/omping/default.nix index dc52d767438..33d5a5f5111 100644 --- a/pkgs/applications/networking/omping/default.nix +++ b/pkgs/applications/networking/omping/default.nix @@ -27,7 +27,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; meta = with stdenv.lib; { - description = "Open Multicast Ping (omping) is a tool for testing IPv4/IPv6 multicast connectivity on a LAN."; + description = "Open Multicast Ping (omping) is a tool for testing IPv4/IPv6 multicast connectivity on a LAN"; license = licenses.mit; platforms = platforms.unix; inherit (src.meta) homepage; diff --git a/pkgs/applications/networking/p2p/magnetico/default.nix b/pkgs/applications/networking/p2p/magnetico/default.nix index b8c1991c88f..44084daf9c0 100644 --- a/pkgs/applications/networking/p2p/magnetico/default.nix +++ b/pkgs/applications/networking/p2p/magnetico/default.nix @@ -23,7 +23,7 @@ buildGoModule rec { ''; meta = with lib; { - description = "Autonomous (self-hosted) BitTorrent DHT search engine suite."; + description = "Autonomous (self-hosted) BitTorrent DHT search engine suite"; homepage = "https://github.com/boramalper/magnetico"; license = licenses.agpl3; badPlatforms = platforms.darwin; diff --git a/pkgs/applications/networking/p2p/opentracker/default.nix b/pkgs/applications/networking/p2p/opentracker/default.nix index ed44ff24fec..82480b1ed21 100644 --- a/pkgs/applications/networking/p2p/opentracker/default.nix +++ b/pkgs/applications/networking/p2p/opentracker/default.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation { homepage = "https://erdgeist.org/arts/software/opentracker/"; license = licenses.beerware; platforms = platforms.linux; - description = "Bittorrent tracker project which aims for minimal resource usage and is intended to run at your wlan router."; + description = "Bittorrent tracker project which aims for minimal resource usage and is intended to run at your wlan router"; maintainers = with maintainers; [ makefu ]; }; } diff --git a/pkgs/applications/networking/p2p/transmission-remote-cli/default.nix b/pkgs/applications/networking/p2p/transmission-remote-cli/default.nix deleted file mode 100644 index 7c6e35752a0..00000000000 --- a/pkgs/applications/networking/p2p/transmission-remote-cli/default.nix +++ /dev/null @@ -1,26 +0,0 @@ -{ stdenv, fetchurl, pythonPackages }: - -stdenv.mkDerivation rec { - pname = "transmission-remote-cli"; - version = "1.7.1"; - - src = fetchurl { - url = "https://github.com/fagga/transmission-remote-cli/archive/v${version}.tar.gz"; - sha256 = "1y0hkpcjf6jw9xig8yf484hbhy63nip0pkchx401yxj81m25l4z9"; - }; - - buildInputs = with pythonPackages; [ python wrapPython ]; - - installPhase = '' - install -D transmission-remote-cli $out/bin/transmission-remote-cli - install -D transmission-remote-cli.1 $out/share/man/man1/transmission-remote-cli.1 - wrapPythonPrograms - ''; - - meta = { - description = "Curses interface for the Transmission BitTorrent daemon"; - homepage = "https://github.com/fagga/transmission-remote-cli"; - license = stdenv.lib.licenses.gpl3Plus; - platforms = stdenv.lib.platforms.unix; - }; -} diff --git a/pkgs/applications/networking/p2p/tremc/default.nix b/pkgs/applications/networking/p2p/tremc/default.nix index 37f2a3584ee..485366afe93 100644 --- a/pkgs/applications/networking/p2p/tremc/default.nix +++ b/pkgs/applications/networking/p2p/tremc/default.nix @@ -10,15 +10,15 @@ let optional stdenv.isDarwin pbcopy ); in -python3Packages.buildPythonPackage rec { - version = "0.9.1"; +python3Packages.buildPythonApplication rec { pname = "tremc"; + version = "0.9.2"; src = fetchFromGitHub { owner = "tremc"; repo = pname; - rev = "0.9.1"; - sha256 = "1yhwvlcyv1s830p5a7q5x3mkb3mbvr5cn5nh7y62l5b6iyyynlvm"; + rev = version; + sha256 = "1fqspp2ckafplahgba54xmx0sjidx1pdzyjaqjhz0ivh98dkx2n5"; }; buildInputs = with python3Packages; [ @@ -44,6 +44,6 @@ python3Packages.buildPythonPackage rec { meta = with stdenv.lib; { description = "Curses interface for transmission"; homepage = "https://github.com/tremc/tremc"; - license = licenses.gpl3; + license = licenses.gpl3Plus; }; } diff --git a/pkgs/applications/networking/protonvpn-gui/default.nix b/pkgs/applications/networking/protonvpn-gui/default.nix index 38ffb42aaf8..c2d7fbd10b1 100644 --- a/pkgs/applications/networking/protonvpn-gui/default.nix +++ b/pkgs/applications/networking/protonvpn-gui/default.nix @@ -77,7 +77,7 @@ in python3Packages.buildPythonApplication rec { ''; meta = with lib; { - description = "Linux GUI for ProtonVPN, written in Python."; + description = "Linux GUI for ProtonVPN, written in Python"; homepage = "https://github.com/ProtonVPN/linux-gui"; maintainers = with maintainers; [ offline ]; license = licenses.gpl3; diff --git a/pkgs/applications/networking/super-productivity/default.nix b/pkgs/applications/networking/super-productivity/default.nix index 7a70375e42c..3c4c0f0df3c 100644 --- a/pkgs/applications/networking/super-productivity/default.nix +++ b/pkgs/applications/networking/super-productivity/default.nix @@ -97,7 +97,7 @@ in stdenv.mkDerivation { dontStrip = true; meta = with stdenv.lib; { - description = "To Do List / Time Tracker with Jira Integration."; + description = "To Do List / Time Tracker with Jira Integration"; homepage = "https://super-productivity.com"; license = licenses.mit; platforms = [ "x86_64-linux" ]; diff --git a/pkgs/applications/networking/sync/rclone/default.nix b/pkgs/applications/networking/sync/rclone/default.nix index bd68531db19..bf9be1b103d 100644 --- a/pkgs/applications/networking/sync/rclone/default.nix +++ b/pkgs/applications/networking/sync/rclone/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "rclone"; - version = "1.53.1"; + version = "1.53.2"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "1yi6n5ip680ydqhz8fnd0igr8dy7zzhpx37mdgahsfac7cwf6k0q"; + sha256 = "0ns55b6s4zdw94jlialps3knclghj9xqx84ff8hyrl9ksq02kd3w"; }; vendorSha256 = "1l4iz31k1pylvf0zrp4nhxna70s1ma4981x6q1s3dhszjxil5c88"; diff --git a/pkgs/applications/networking/sync/rsync/base.nix b/pkgs/applications/networking/sync/rsync/base.nix index a0522dfe820..da00b4cbc2e 100644 --- a/pkgs/applications/networking/sync/rsync/base.nix +++ b/pkgs/applications/networking/sync/rsync/base.nix @@ -1,16 +1,16 @@ { stdenv, fetchurl }: rec { - version = "3.1.3"; + version = "3.2.3"; src = fetchurl { # signed with key 0048 C8B0 26D4 C96F 0E58 9C2F 6C85 9FB1 4B96 A8C5 url = "mirror://samba/rsync/src/rsync-${version}.tar.gz"; - sha256 = "1h0011dj6jgqpgribir4anljjv7bbrdcs8g91pbsmzf5zr75bk2m"; + sha256 = "03p5dha9g9krq61mdbcrjkpz5nglri0009ks2vs9k97f9i83rk5y"; }; upstreamPatchTarball = fetchurl { # signed with key 0048 C8B0 26D4 C96F 0E58 9C2F 6C85 9FB1 4B96 A8C5 url = "mirror://samba/rsync/rsync-patches-${version}.tar.gz"; - sha256 = "167vk463bb3xl9c4gsbxms111dk1ip7pq8y361xc0xfa427q9hhd"; + sha256 = "1wj21v57v135n6fnmlm2dxmb9lhrrg62jgkggldp1gb7d6s4arny"; }; meta = with stdenv.lib; { diff --git a/pkgs/applications/networking/sync/rsync/default.nix b/pkgs/applications/networking/sync/rsync/default.nix index 41a2d1e0db3..7f384846c96 100644 --- a/pkgs/applications/networking/sync/rsync/default.nix +++ b/pkgs/applications/networking/sync/rsync/default.nix @@ -1,8 +1,18 @@ { stdenv, fetchurl, perl, libiconv, zlib, popt -, enableACLs ? !(stdenv.isDarwin || stdenv.isSunOS || stdenv.isFreeBSD) -, acl ? null, enableCopyDevicesPatch ? false, nixosTests }: +, enableACLs ? !(stdenv.isDarwin || stdenv.isSunOS || stdenv.isFreeBSD), acl ? null +, enableLZ4 ? true, lz4 ? null +, enableOpenSSL ? true, openssl ? null +, enableXXHash ? true, xxHash ? null +, enableZstd ? true, zstd ? null +, enableCopyDevicesPatch ? false +, nixosTests +}: assert enableACLs -> acl != null; +assert enableLZ4 -> lz4 != null; +assert enableOpenSSL -> openssl != null; +assert enableXXHash -> xxHash != null; +assert enableZstd -> zstd != null; let base = import ./base.nix { inherit stdenv fetchurl; }; @@ -17,10 +27,23 @@ stdenv.mkDerivation rec { srcs = [mainSrc] ++ stdenv.lib.optional enableCopyDevicesPatch patchesSrc; patches = stdenv.lib.optional enableCopyDevicesPatch "./patches/copy-devices.diff"; - buildInputs = [libiconv zlib popt] ++ stdenv.lib.optional enableACLs acl; + buildInputs = [libiconv zlib popt] + ++ stdenv.lib.optional enableACLs acl + ++ stdenv.lib.optional enableZstd zstd + ++ stdenv.lib.optional enableLZ4 lz4 + ++ stdenv.lib.optional enableOpenSSL openssl + ++ stdenv.lib.optional enableXXHash xxHash; nativeBuildInputs = [perl]; - configureFlags = ["--with-nobody-group=nogroup"]; + configureFlags = ["--with-nobody-group=nogroup"] + # Work around issue with cross-compilation: + # configure.sh: error: cannot run test program while cross compiling + # Remove once 3.2.4 or more recent is released. + # The following PR should fix the cross-compilation issue. + # Test using `nix-build -A pkgsCross.aarch64-multiplatform.rsync`. + # https://github.com/WayneD/rsync/commit/b7fab6f285ff0ff3816b109a8c3131b6ded0b484 + ++ stdenv.lib.optional (stdenv.hostPlatform != stdenv.buildPlatform) "--enable-simd=no" + ; passthru.tests = { inherit (nixosTests) rsyncd; }; diff --git a/pkgs/applications/networking/tcpkali/default.nix b/pkgs/applications/networking/tcpkali/default.nix index a7142542238..fae3bde72f0 100644 --- a/pkgs/applications/networking/tcpkali/default.nix +++ b/pkgs/applications/networking/tcpkali/default.nix @@ -11,6 +11,9 @@ stdenv.mkDerivation rec { rev = "v${version}"; sha256 = "09ky3cccaphcqc6nhfs00pps99lasmzc2pf5vk0gi8hlqbbhilxf"; }; + postPatch = '' + sed -ie '/sys\/sysctl\.h/d' src/tcpkali_syslimits.c + ''; nativeBuildInputs = [ autoreconfHook ]; buildInputs = [ bison]; meta = { diff --git a/pkgs/applications/networking/tsung/default.nix b/pkgs/applications/networking/tsung/default.nix index 6f5a3f3ec16..7b142249687 100644 --- a/pkgs/applications/networking/tsung/default.nix +++ b/pkgs/applications/networking/tsung/default.nix @@ -37,7 +37,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "http://tsung.erlang-projects.org/"; - description = "A high-performance benchmark framework for various protocols including HTTP, XMPP, LDAP, etc."; + description = "A high-performance benchmark framework for various protocols including HTTP, XMPP, LDAP, etc"; longDescription = '' Tsung is a distributed load testing tool. It is protocol-independent and can currently be used to stress HTTP, WebDAV, SOAP, PostgreSQL, MySQL, diff --git a/pkgs/applications/office/fava/default.nix b/pkgs/applications/office/fava/default.nix index b33d978ee0b..d6b404f9db7 100644 --- a/pkgs/applications/office/fava/default.nix +++ b/pkgs/applications/office/fava/default.nix @@ -5,11 +5,11 @@ let in buildPythonApplication rec { pname = "fava"; - version = "1.15"; + version = "1.16"; src = fetchPypi { inherit pname version; - sha256 = "037fhimfjiqay28wg7hd5sm7r0935ynw9d905iszn965ihr1qsgz"; + sha256 = "436b6f9441a638f8028729c2a39c28433f7878c2af6ddb9bfccaeea9ea3086e1"; }; checkInputs = [ python3.pkgs.pytest ]; diff --git a/pkgs/applications/office/gnucash/cmake_check_symbol_exists.patch b/pkgs/applications/office/gnucash/cmake_check_symbol_exists.patch deleted file mode 100644 index 5e0ae68e17c..00000000000 --- a/pkgs/applications/office/gnucash/cmake_check_symbol_exists.patch +++ /dev/null @@ -1,12 +0,0 @@ -Index: gnucash-3.6/gnucash/register/register-gnome/CMakeLists.txt -=================================================================== ---- gnucash-3.6.orig/gnucash/register/register-gnome/CMakeLists.txt -+++ gnucash-3.6/gnucash/register/register-gnome/CMakeLists.txt -@@ -1,6 +1,7 @@ - add_subdirectory(test) - - #GTK before 3.14 didn't have GDK_MODIFIER_INTENT_DEFAULT_MOD_MASK -+include(CheckSymbolExists) - check_symbol_exists(GDK_MODIFIER_INTENT_DEFAULT_MOD_MASK gdk/gdktypes.h have_mod_mask) - if (NOT have_mod_mask) - if (MAC_INTEGRATION) diff --git a/pkgs/applications/office/gnucash/default.nix b/pkgs/applications/office/gnucash/default.nix index 641d400886f..29a96aac5c4 100644 --- a/pkgs/applications/office/gnucash/default.nix +++ b/pkgs/applications/office/gnucash/default.nix @@ -25,11 +25,11 @@ in stdenv.mkDerivation rec { pname = "gnucash"; - version = "3.10"; + version = "4.2"; src = fetchurl { url = "mirror://sourceforge/gnucash/${pname}-${version}.tar.bz2"; - sha256 = "05kgg7mhizndwn7icnarqk3c19xrzfawf90y9nb3jdm6fv1741xn"; + sha256 = "020k1mm909dcgs52ls4v7xx3yn8gqazi9awyr81l6y7pkq1spn2n"; }; nativeBuildInputs = [ pkgconfig makeWrapper cmake gtest ]; @@ -46,8 +46,6 @@ stdenv.mkDerivation rec { # glib-2.62 deprecations NIX_CFLAGS_COMPILE = "-DGLIB_DISABLE_DEPRECATION_WARNINGS"; - patches = [ ./cmake_check_symbol_exists.patch ]; - postPatch = '' patchShebangs . ''; diff --git a/pkgs/applications/office/grisbi/default.nix b/pkgs/applications/office/grisbi/default.nix index d4f08b141a6..812218d0a38 100644 --- a/pkgs/applications/office/grisbi/default.nix +++ b/pkgs/applications/office/grisbi/default.nix @@ -30,7 +30,7 @@ stdenv.mkDerivation rec { ]; meta = with stdenv.lib; { - description = "A personnal accounting application."; + description = "A personnal accounting application"; longDescription = '' Grisbi is an application written by French developers, so it perfectly respects French accounting rules. Grisbi can manage multiple accounts, diff --git a/pkgs/applications/office/gtg/default.nix b/pkgs/applications/office/gtg/default.nix index 9fccd574eb1..2cc3e8eb922 100644 --- a/pkgs/applications/office/gtg/default.nix +++ b/pkgs/applications/office/gtg/default.nix @@ -61,7 +61,7 @@ python3Packages.buildPythonApplication rec { checkPhase = "python3 ../run-tests"; meta = with stdenv.lib; { - description = " A personal tasks and TODO-list items organizer."; + description = " A personal tasks and TODO-list items organizer"; longDescription = '' "Getting Things GNOME" (GTG) is a personal tasks and ToDo list organizer inspired by the "Getting Things Done" (GTD) methodology. GTG is intended to help you track everything you need to do and need to know, from small tasks to large projects. diff --git a/pkgs/applications/office/paperless/python-modules/default.nix b/pkgs/applications/office/paperless/python-modules/default.nix index 40a496312fa..4c5510ebb74 100644 --- a/pkgs/applications/office/paperless/python-modules/default.nix +++ b/pkgs/applications/office/paperless/python-modules/default.nix @@ -1,6 +1,6 @@ pyPkgs: fetchFromGitHub: { - django_2_0 = pyPkgs.django_2_2.overridePythonAttrs (old: rec { + django_2_0 = pyPkgs.django_2.overridePythonAttrs (old: rec { version = "2.0.12"; src = pyPkgs.fetchPypi { inherit (old) pname; diff --git a/pkgs/applications/office/portfolio/default.nix b/pkgs/applications/office/portfolio/default.nix index b3538dd2b71..e186b3e3ce5 100644 --- a/pkgs/applications/office/portfolio/default.nix +++ b/pkgs/applications/office/portfolio/default.nix @@ -24,11 +24,11 @@ let in stdenv.mkDerivation rec { pname = "PortfolioPerformance"; - version = "0.48.1"; + version = "0.49.0"; src = fetchurl { url = "https://github.com/buchen/portfolio/releases/download/${version}/PortfolioPerformance-${version}-linux.gtk.x86_64.tar.gz"; - sha256 = "0xhxp4iglggv6rqwsg0xjn8z46v910rj372abkaviwa3cqzf7gdb"; + sha256 = "1b3dll6ljkj2wyiy3ns9cgxqgjjr60dfrqrbbwdbndqj4pzfvbyf"; }; nativeBuildInputs = [ @@ -58,7 +58,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "A simple tool to calculate the overall performance of an investment portfolio."; + description = "A simple tool to calculate the overall performance of an investment portfolio"; homepage = "https://www.portfolio-performance.info/"; license = licenses.epl10; maintainers = with maintainers; [ elohmeier oyren ]; diff --git a/pkgs/applications/office/softmaker/generic.nix b/pkgs/applications/office/softmaker/generic.nix index c1e25ecb00e..56f3cb74363 100644 --- a/pkgs/applications/office/softmaker/generic.nix +++ b/pkgs/applications/office/softmaker/generic.nix @@ -5,7 +5,10 @@ # For fixing up execution of /bin/ls, which is necessary for # product unlocking. -, coreutils +, coreutils, libredirect + + # Extra utilities used by the SoftMaker applications. +, gnugrep, utillinux, which , pname, version, edition, suiteName, src, archive @@ -52,7 +55,26 @@ in stdenv.mkDerivation { runHook postUnpack ''; - installPhase = '' + installPhase = let + # SoftMaker/FreeOffice collects some system information upon + # unlocking the product. But in doing so, it attempts to execute + # /bin/ls. If the execve syscall fails, the whole unlock + # procedure fails. This works around that by rewriting /bin/ls + # to the proper path. + # + # In addition, it expects some common utilities (which, whereis) + # to be in the path. + # + # SoftMaker Office restarts itself upon some operations, such + # changing the theme and unlocking. Unfortunately, we do not + # have control over its environment then and it will fail + # with an error. + extraWrapperArgs = '' + --set LD_PRELOAD "${libredirect}/lib/libredirect.so" \ + --set NIX_REDIRECTS "/bin/ls=${coreutils}/bin/ls" \ + --prefix PATH : "${stdenv.lib.makeBinPath [ coreutils gnugrep utillinux which ]}" + ''; + in '' runHook preInstall mkdir -p $out/share @@ -61,9 +83,12 @@ in stdenv.mkDerivation { # Wrap rather than symlinking, so that the programs can determine # their resource path. mkdir -p $out/bin - makeWrapper $out/share/${pname}${edition}/planmaker $out/bin/${pname}-planmaker - makeWrapper $out/share/${pname}${edition}/presentations $out/bin/${pname}-presentations - makeWrapper $out/share/${pname}${edition}/textmaker $out/bin/${pname}-textmaker + makeWrapper $out/share/${pname}${edition}/planmaker $out/bin/${pname}-planmaker \ + ${extraWrapperArgs} + makeWrapper $out/share/${pname}${edition}/presentations $out/bin/${pname}-presentations \ + ${extraWrapperArgs} + makeWrapper $out/share/${pname}${edition}/textmaker $out/bin/${pname}-textmaker \ + ${extraWrapperArgs} for size in 16 32 48 64 96 128 256 512 1024; do mkdir -p $out/share/icons/hicolor/''${size}x''${size}/apps diff --git a/pkgs/applications/office/trilium/default.nix b/pkgs/applications/office/trilium/default.nix index 3d577a8852e..217f1fd85d6 100644 --- a/pkgs/applications/office/trilium/default.nix +++ b/pkgs/applications/office/trilium/default.nix @@ -1,7 +1,7 @@ { stdenv, nixosTests, fetchurl, autoPatchelfHook, atomEnv, makeWrapper, makeDesktopItem, gtk3, wrapGAppsHook, zlib, libxkbfile }: let - description = "Trilium Notes is a hierarchical note taking application with focus on building large personal knowledge bases."; + description = "Trilium Notes is a hierarchical note taking application with focus on building large personal knowledge bases"; desktopItem = makeDesktopItem { name = "Trilium"; exec = "trilium"; diff --git a/pkgs/applications/office/zanshin/default.nix b/pkgs/applications/office/zanshin/default.nix index 18e76297496..e3b9408ed96 100644 --- a/pkgs/applications/office/zanshin/default.nix +++ b/pkgs/applications/office/zanshin/default.nix @@ -1,10 +1,18 @@ -{ - mkDerivation, lib, - fetchurl, - extra-cmake-modules, - qtbase, boost, - akonadi-calendar, akonadi-notes, akonadi-search, kidentitymanagement, kontactinterface, kldap, - krunner, kwallet, kcalendarcore +{ mkDerivation +, lib +, fetchurl +, extra-cmake-modules +, qtbase +, boost +, akonadi-calendar +, akonadi-notes +, akonadi-search +, kidentitymanagement +, kontactinterface +, kldap +, krunner +, kwallet +, kcalendarcore }: mkDerivation rec { @@ -21,9 +29,17 @@ mkDerivation rec { ]; buildInputs = [ - qtbase boost - akonadi-calendar akonadi-notes akonadi-search kidentitymanagement kontactinterface kldap - krunner kwallet kcalendarcore + qtbase + boost + akonadi-calendar + akonadi-notes + akonadi-search + kidentitymanagement + kontactinterface + kldap + krunner + kwallet + kcalendarcore ]; meta = with lib; { @@ -32,5 +48,6 @@ mkDerivation rec { maintainers = with maintainers; [ zraexy ]; platforms = platforms.linux; license = licenses.gpl2Plus; + broken = true; }; } diff --git a/pkgs/applications/radio/aldo/default.nix b/pkgs/applications/radio/aldo/default.nix index df52531a518..83bb520272e 100644 --- a/pkgs/applications/radio/aldo/default.nix +++ b/pkgs/applications/radio/aldo/default.nix @@ -1,14 +1,19 @@ -{ stdenv, fetchurl, libao }: +{ stdenv, fetchgit, libao, autoreconfHook }: -stdenv.mkDerivation rec { +let pname = "aldo"; - version = "0.7.7"; + version = "0.7.8"; +in stdenv.mkDerivation { + inherit pname version; - src = fetchurl { - url = "mirror://savannah/${pname}/${pname}-${version}.tar.bz2"; - sha256 = "14lzgldqzbbzydsy1cai3wln3hpyj1yhj8ji3wygyzr616fq9f7i"; + src = fetchgit { + url = "git://git.savannah.gnu.org/${pname}.git"; + rev = "v${version}"; + sha256 = "0swvdq0pw1msy40qkpn1ar9kacqjyrw2azvf2fy38y0svyac8z2i"; }; + nativeBuildInputs = [ autoreconfHook ]; + buildInputs = [ libao ]; meta = with stdenv.lib; { diff --git a/pkgs/applications/radio/fldigi/default.nix b/pkgs/applications/radio/fldigi/default.nix index af93b7ee65d..3811c8fd6f2 100644 --- a/pkgs/applications/radio/fldigi/default.nix +++ b/pkgs/applications/radio/fldigi/default.nix @@ -2,12 +2,12 @@ libsamplerate, libpulseaudio, libXinerama, gettext, pkgconfig, alsaLib }: stdenv.mkDerivation rec { - version = "4.1.14"; + version = "4.1.15"; pname = "fldigi"; src = fetchurl { url = "mirror://sourceforge/${pname}/${pname}-${version}.tar.gz"; - sha256 = "0hr6xbv01xf7z4r2jxxhn8xjdmca2198q4m9glh4877dllvfq6xj"; + sha256 = "1fzbcv2dgg6byb2l8m2d6i69yn0a44pq52mpmms756jdf6z622i6"; }; buildInputs = [ libXinerama gettext hamlib fltk14 libjpeg libpng portaudio diff --git a/pkgs/applications/radio/gqrx/default.nix b/pkgs/applications/radio/gqrx/default.nix index 33b858799e2..786e463686f 100644 --- a/pkgs/applications/radio/gqrx/default.nix +++ b/pkgs/applications/radio/gqrx/default.nix @@ -9,13 +9,13 @@ assert pulseaudioSupport -> libpulseaudio != null; mkDerivation rec { pname = "gqrx"; - version = "2.12.1"; + version = "2.13.2"; src = fetchFromGitHub { owner = "csete"; repo = "gqrx"; rev = "v${version}"; - sha256 = "00alf3q6y313xpx6p7v43vqsphd2x4am4q362lw21bcy9wc4jidw"; + sha256 = "1lcy9gqb1x9fwq550bywj7h66rdacq5893wsax1p7qvqa27d945b"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/radio/noaa-apt/default.nix b/pkgs/applications/radio/noaa-apt/default.nix index 55703ea44d6..a81f2ea8f7d 100644 --- a/pkgs/applications/radio/noaa-apt/default.nix +++ b/pkgs/applications/radio/noaa-apt/default.nix @@ -13,13 +13,13 @@ rustPlatform.buildRustPackage rec { pname = "noaa-apt"; - version = "1.2.0"; + version = "1.3.0"; src = fetchFromGitHub { owner = "martinber"; repo = "noaa-apt"; rev = "v${version}"; - sha256 = "0fqki4a9c54rixdz5bpswvn433f9saw6yazgw4av3xdd7g2fdvvj"; + sha256 = "0fmbg6lw7lmm402hzddpzgi7y9mc6kic14x8rif7fampk20mv3ms"; }; nativeBuildInputs = [ @@ -36,7 +36,7 @@ rustPlatform.buildRustPackage rec { pango ]; - cargoSha256 = "1pzcq31inazmc9cz31fspzqkp0lpkjid8ai3g17sin1pfzby5jlh"; + cargoSha256 = "0w4rbbz8lsh31xkgibzndiic47690nfcjrn1411dskf7ali6djy8"; preBuild = '' # Used by macro pointing to resource location at compile time. @@ -55,10 +55,11 @@ rustPlatform.buildRustPackage rec { ''; meta = with lib; { - description = "NOAA APT image decoder."; + description = "NOAA APT image decoder"; homepage = "http://noaa-apt.mbernardi.com.ar/"; license = licenses.gpl3Only; maintainers = with maintainers; [ trepetti ]; + platforms = platforms.all; changelog = "https://github.com/martinber/noaa-apt/releases/tag/v${version}"; }; } diff --git a/pkgs/applications/radio/rtl-sdr/default.nix b/pkgs/applications/radio/rtl-sdr/default.nix index 8fb5154ff78..7e044296b02 100644 --- a/pkgs/applications/radio/rtl-sdr/default.nix +++ b/pkgs/applications/radio/rtl-sdr/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchgit, cmake, pkgconfig, libusb1 }: +{ stdenv, fetchgit, fetchpatch, cmake, pkgconfig, libusb1 }: stdenv.mkDerivation rec { pname = "rtl-sdr"; @@ -10,6 +10,12 @@ stdenv.mkDerivation rec { sha256 = "0lmvsnb4xw4hmz6zs0z5ilsah5hjz29g1s0050n59fllskqr3b8k"; }; + patches = [ (fetchpatch { + name = "hardened-udev-rules.patch"; + url = "https://osmocom.org/projects/rtl-sdr/repository/revisions/b2814731563be4d5a0a68554ece6454a2c63af12/diff?format=diff"; + sha256 = "0ns740s2rys4glq4la4bh0sxfv1mn61yfjns2yllhx70rsb2fqrn"; + }) ]; + nativeBuildInputs = [ pkgconfig cmake ]; buildInputs = [ libusb1 ]; diff --git a/pkgs/applications/radio/urh/default.nix b/pkgs/applications/radio/urh/default.nix index 730b679ba61..008697211f7 100644 --- a/pkgs/applications/radio/urh/default.nix +++ b/pkgs/applications/radio/urh/default.nix @@ -5,13 +5,13 @@ python3Packages.buildPythonApplication rec { pname = "urh"; - version = "2.8.8"; + version = "2.8.9"; src = fetchFromGitHub { owner = "jopohl"; repo = pname; rev = "v${version}"; - sha256 = "0knymy85n9kxj364jpxjc4v9c238b00nl40rafi1ripkqx36bsfv"; + sha256 = "0axzqyljbmpc4c9bnqmdrrz5la5r9qynp49fig645xyxs87vq6b0"; }; nativeBuildInputs = [ qt5.wrapQtAppsHook ]; diff --git a/pkgs/applications/science/biology/bedtools/default.nix b/pkgs/applications/science/biology/bedtools/default.nix index 332e06ea0cf..f92e912f680 100644 --- a/pkgs/applications/science/biology/bedtools/default.nix +++ b/pkgs/applications/science/biology/bedtools/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { installPhase = "make prefix=$out SHELL=${stdenv.shell} CXX=${cxx} CC=${cc} install"; meta = with stdenv.lib; { - description = "A powerful toolset for genome arithmetic."; + description = "A powerful toolset for genome arithmetic"; license = licenses.gpl2; homepage = "https://bedtools.readthedocs.io/en/latest/"; maintainers = with maintainers; [ jbedo ]; diff --git a/pkgs/applications/science/biology/dcm2niix/default.nix b/pkgs/applications/science/biology/dcm2niix/default.nix index 59b173ac98c..cfd1206f231 100644 --- a/pkgs/applications/science/biology/dcm2niix/default.nix +++ b/pkgs/applications/science/biology/dcm2niix/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { buildInputs = [ libyamlcpp ]; meta = with stdenv.lib; { - description = "dcm2niix DICOM to NIfTI converter"; + description = "DICOM to NIfTI converter"; longDescription = '' dcm2niix is a designed to convert neuroimaging data from the DICOM format to the NIfTI format. diff --git a/pkgs/applications/science/biology/deeptools/default.nix b/pkgs/applications/science/biology/deeptools/default.nix index 8787c96e5b0..efa246a277f 100644 --- a/pkgs/applications/science/biology/deeptools/default.nix +++ b/pkgs/applications/science/biology/deeptools/default.nix @@ -4,11 +4,11 @@ with python.pkgs; buildPythonApplication rec { pname = "deepTools"; - version = "3.4.1"; + version = "3.5.0"; src = fetchPypi { inherit pname version; - sha256 = "05zw9gk17hz08hns5lnhn7l13idg9jdz4gdba6m6gbr84yz149gs"; + sha256 = "1a14a29e60be13eac11bd204dab9aef73cd72fe56a94c587333f21087584c0d8"; }; propagatedBuildInputs = [ diff --git a/pkgs/applications/science/biology/delly/default.nix b/pkgs/applications/science/biology/delly/default.nix index a6c45f8aa44..6acdc53544c 100644 --- a/pkgs/applications/science/biology/delly/default.nix +++ b/pkgs/applications/science/biology/delly/default.nix @@ -1,25 +1,16 @@ { stdenv, fetchpatch, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }: -let - htslibPatch = fetchpatch { - url = "https://github.com/dellytools/delly/commit/0e5c710b0c5ea790bb39699d4cbd49cf4fb86f14.diff"; - sha256 = "09bz1qqvzhdzm99hf9zgrv80kq9jlr1m2mdvx96p2hk5lpnbdl7y"; - excludes = [ "src/htslib" ]; - }; - -in stdenv.mkDerivation rec { +stdenv.mkDerivation rec { pname = "delly"; - version = "0.8.2"; + version = "0.8.5"; src = fetchFromGitHub { owner = "dellytools"; repo = pname; rev = "v${version}"; - sha256 = "14bkmixz7737xj192ww96s3a20zc7xs7r04db8avw3ggi3i1s1cs"; + sha256 = "1af1y20hd8x2yvix0gjvx038w7chf4fiyr68ny5yvrx5b2gw0vbq"; }; - patches = [ htslibPatch ]; - buildInputs = [ zlib htslib bzip2 lzma ncurses boost ]; EBROOTHTSLIB = htslib; @@ -34,7 +25,7 @@ in stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Structural variant caller for mapped DNA sequenced data"; - license = licenses.gpl3; + license = licenses.bsd3; maintainers = with maintainers; [ scalavision ]; platforms = platforms.linux; longDescription = '' diff --git a/pkgs/applications/science/biology/kallisto/default.nix b/pkgs/applications/science/biology/kallisto/default.nix index 5a1bb187886..014ae14cc79 100644 --- a/pkgs/applications/science/biology/kallisto/default.nix +++ b/pkgs/applications/science/biology/kallisto/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = false; meta = with stdenv.lib; { - description = "Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data"; + description = "Program for quantifying abundances of transcripts from RNA-Seq data"; homepage = "https://pachterlab.github.io/kallisto"; license = licenses.bsd2; platforms = platforms.linux; diff --git a/pkgs/applications/science/biology/lumpy/default.nix b/pkgs/applications/science/biology/lumpy/default.nix new file mode 100644 index 00000000000..04512e8e372 --- /dev/null +++ b/pkgs/applications/science/biology/lumpy/default.nix @@ -0,0 +1,47 @@ +{ stdenv, fetchFromGitHub, htslib, zlib, curl, openssl, samblaster, sambamba +, samtools, hexdump, python2Packages, which }: + +let + python = + python2Packages.python.withPackages (pkgs: with pkgs; [ pysam numpy ]); + +in stdenv.mkDerivation rec { + pname = "lumpy"; + version = "0.3.0"; + + src = fetchFromGitHub { + owner = "arq5x"; + repo = "lumpy-sv"; + rev = version; + sha256 = "0azhzvmh9az9jcq0xprlzdz6w16azgszv4kshb903bwbnqirmk18"; + }; + + nativeBuildInputs = [ which ]; + buildInputs = + [ htslib zlib curl openssl python samblaster sambamba samtools hexdump ]; + + preConfigure = '' + patchShebangs ./. + + # Use Nix htslib over bundled version + sed -i 's/lumpy_filter: htslib/lumpy_filter:/' Makefile + sed -i 's|../../lib/htslib/libhts.a|-lhts|' src/filter/Makefile + ''; + + # Upstream's makefile doesn't have an install target + installPhase = '' + mkdir -p $out + cp -r bin $out + cp -r scripts $out + sed -i 's|/build/source|'$out'|' $out/bin/lumpyexpress.config + ''; + + meta = with stdenv.lib; { + description = "Probabilistic structural variant caller"; + homepage = "https://github.com/arq5x/lumpy-sv"; + maintainers = with maintainers; [ jbedo ]; + license = licenses.mit; + platforms = [ "x86_64-linux" ]; + }; + +} diff --git a/pkgs/applications/science/biology/mosdepth/default.nix b/pkgs/applications/science/biology/mosdepth/default.nix index 1ce6357d2e8..d0f98719fa1 100644 --- a/pkgs/applications/science/biology/mosdepth/default.nix +++ b/pkgs/applications/science/biology/mosdepth/default.nix @@ -37,7 +37,7 @@ in stdenv.mkDerivation rec { installPhase = "install -Dt $out/bin mosdepth"; meta = with stdenv.lib; { - description = "fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing."; + description = "fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing"; license = licenses.mit; homepage = "https://github.com/brentp/mosdepth"; maintainers = with maintainers; [ jbedo ]; diff --git a/pkgs/applications/science/biology/sambamba/default.nix b/pkgs/applications/science/biology/sambamba/default.nix new file mode 100644 index 00000000000..7e33a661218 --- /dev/null +++ b/pkgs/applications/science/biology/sambamba/default.nix @@ -0,0 +1,31 @@ +{ stdenv, fetchFromGitHub, python3, which, dmd, ldc, zlib }: + +stdenv.mkDerivation rec { + pname = "sambamba"; + version = "0.7.1"; + + src = fetchFromGitHub { + owner = "biod"; + repo = "sambamba"; + rev = "v${version}"; + sha256 = "0k5wy06zrbsc40x6answgz7rz2phadyqwlhi9nqxbfqanbg9kq20"; + fetchSubmodules = true; + }; + + nativeBuildInputs = [ which python3 dmd ldc ]; + buildInputs = [ zlib ]; + + # Upstream's install target is broken; copy manually + installPhase = '' + mkdir -p $out/bin + cp bin/sambamba-${version} $out/bin/sambamba + ''; + + meta = with stdenv.lib; { + description = "SAM/BAM processing tool"; + homepage = "https://lomereiter.github.io/sambamba/"; + maintainers = with maintainers; [ jbedo ]; + license = with licenses; gpl2; + platforms = platforms.x86_64; + }; +} diff --git a/pkgs/applications/science/biology/samblaster/default.nix b/pkgs/applications/science/biology/samblaster/default.nix new file mode 100644 index 00000000000..7795ba23736 --- /dev/null +++ b/pkgs/applications/science/biology/samblaster/default.nix @@ -0,0 +1,26 @@ +{ stdenv, fetchFromGitHub }: + +stdenv.mkDerivation rec { + pname = "samblaster"; + version = "0.1.24"; + + src = fetchFromGitHub { + owner = "GregoryFaust"; + repo = "samblaster"; + rev = "v.${version}"; + sha256 = "0iv2ddfw8363vb2x8gr3p8g88whb6mb9m0pf71i2cqsbv6jghap7"; + }; + + installPhase = '' + mkdir -p $out/bin + cp samblaster $out/bin + ''; + + meta = with stdenv.lib; { + description = "Tool for marking duplicates and extracting discordant/split reads from SAM/BAM files"; + maintainers = with maintainers; [ jbedo ]; + license = licenses.mit; + homepage = "https://github.com/GregoryFaust/samblaster"; + platforms = platforms.x86_64; + }; +} diff --git a/pkgs/applications/science/biology/snpeff/default.nix b/pkgs/applications/science/biology/snpeff/default.nix index c68fcfada33..941f107a580 100644 --- a/pkgs/applications/science/biology/snpeff/default.nix +++ b/pkgs/applications/science/biology/snpeff/default.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "Genetic variant annotation and effect prediction toolbox."; + description = "Genetic variant annotation and effect prediction toolbox"; license = licenses.lgpl3; homepage = "http://snpeff.sourceforge.net/"; maintainers = with maintainers; [ jbedo ]; diff --git a/pkgs/applications/science/chemistry/openmolcas/default.nix b/pkgs/applications/science/chemistry/openmolcas/default.nix index 0d74e784d77..8bc62da3a31 100644 --- a/pkgs/applications/science/chemistry/openmolcas/default.nix +++ b/pkgs/applications/science/chemistry/openmolcas/default.nix @@ -7,7 +7,7 @@ assert blas.implementation == "openblas" && lapack.implementation == "openblas"; let - version = "19.11"; + version = "20.10"; gitLabRev = "v${version}"; python = python3.withPackages (ps : with ps; [ six pyparsing ]); @@ -20,18 +20,13 @@ in stdenv.mkDerivation { owner = "Molcas"; repo = "OpenMolcas"; rev = gitLabRev; - sha256 = "1wwqhkyyi7pw5x1ghnp83ir17zl5jsj7phhqxapybyi3bmg0i00q"; + sha256 = "1w8av44dx5r9yp2xhf9ypdrhappvk984wrd5pa1ww0qv6j2446ic"; }; - patches = [ (fetchpatch { - name = "Fix-MPI-INT-size"; # upstream patch, fixes a Fortran compiler error - url = "https://gitlab.com/Molcas/OpenMolcas/commit/860e3350523f05ab18e49a428febac8a4297b6e4.patch"; - sha256 = "0h96h5ikbi5l6ky41nkxmxfhjiykkiifq7vc2s3fdy1r1siv09sb"; - }) (fetchpatch { - name = "fix-cisandbox"; # upstream patch, fixes a Fortran compiler error - url = "https://gitlab.com/Molcas/OpenMolcas/commit/d871590c8ce4689cd94cdbbc618954c65589393d.patch"; - sha256 = "0dgz1w2rkglnis76spai3m51qa72j4bz6ppnk5zmzrr6ql7gwpgg"; - })]; + patches = [ + # Required to handle openblas multiple outputs + ./openblasPath.patch +]; nativeBuildInputs = [ perl cmake texlive.combined.scheme-minimal makeWrapper ]; buildInputs = [ @@ -55,7 +50,7 @@ in stdenv.mkDerivation { "-DTOOLS=ON" "-DHDF5=ON" "-DFDE=ON" - "-DOPENBLASROOT=${openblas}" + "-DOPENBLASROOT=${openblas.dev}" ]; GAROOT=globalarrays; diff --git a/pkgs/applications/science/chemistry/openmolcas/openblasPath.patch b/pkgs/applications/science/chemistry/openmolcas/openblasPath.patch new file mode 100644 index 00000000000..e47adcc3e9a --- /dev/null +++ b/pkgs/applications/science/chemistry/openmolcas/openblasPath.patch @@ -0,0 +1,12 @@ +diff --git a/CMakeLists.txt b/CMakeLists.txt +index 276ae4e2..db13e6e3 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -1507,7 +1507,6 @@ if (LINALG STREQUAL "OpenBLAS") + NAMES openblas + PATHS ${OPENBLASROOT} + PATH_SUFFIXES lib +- NO_DEFAULT_PATH + ) + + if (NOT LIBOPENBLAS) diff --git a/pkgs/applications/science/electronics/flatcam/default.nix b/pkgs/applications/science/electronics/flatcam/default.nix index 247f99485bb..360c6df7fe6 100644 --- a/pkgs/applications/science/electronics/flatcam/default.nix +++ b/pkgs/applications/science/electronics/flatcam/default.nix @@ -48,7 +48,7 @@ python3Packages.buildPythonApplication rec { ''; meta = with lib; { - description = "2-D post processing for PCB fabrication on CNC routers."; + description = "2-D post processing for PCB fabrication on CNC routers"; homepage = "https://bitbucket.org/jpcgt/flatcam"; license = licenses.mit; maintainers = with maintainers; [ trepetti ]; diff --git a/pkgs/applications/science/electronics/kicad/default.nix b/pkgs/applications/science/electronics/kicad/default.nix index 7bf45a8fc54..7290503311d 100644 --- a/pkgs/applications/science/electronics/kicad/default.nix +++ b/pkgs/applications/science/electronics/kicad/default.nix @@ -197,13 +197,13 @@ stdenv.mkDerivation rec { "--prefix XDG_DATA_DIRS : ${cups}/share" "--prefix GIO_EXTRA_MODULES : ${gnome3.dconf}/lib/gio/modules" - "--set KISYSMOD ${footprints}/share/kicad/modules" - "--set KICAD_SYMBOL_DIR ${symbols}/share/kicad/library" - "--set KICAD_TEMPLATE_DIR ${templates}/share/kicad/template" + "--set-default KISYSMOD ${footprints}/share/kicad/modules" + "--set-default KICAD_SYMBOL_DIR ${symbols}/share/kicad/library" + "--set-default KICAD_TEMPLATE_DIR ${templates}/share/kicad/template" "--prefix KICAD_TEMPLATE_DIR : ${symbols}/share/kicad/template" "--prefix KICAD_TEMPLATE_DIR : ${footprints}/share/kicad/template" ] - ++ optionals (with3d) [ "--set KISYS3DMOD ${packages3d}/share/kicad/modules/packages3d" ] + ++ optionals (with3d) [ "--set-default KISYS3DMOD ${packages3d}/share/kicad/modules/packages3d" ] ++ optionals (withNgspice) [ "--prefix LD_LIBRARY_PATH : ${libngspice}/lib" ] # infinisil's workaround for #39493 diff --git a/pkgs/applications/science/electronics/nanovna-saver/default.nix b/pkgs/applications/science/electronics/nanovna-saver/default.nix new file mode 100644 index 00000000000..62bda91e500 --- /dev/null +++ b/pkgs/applications/science/electronics/nanovna-saver/default.nix @@ -0,0 +1,51 @@ +{ lib, mkDerivationWith, wrapQtAppsHook, python3Packages, fetchFromGitHub +, qtbase }: + +let + version = "0.3.7"; + pname = "nanovna-saver"; + +in mkDerivationWith python3Packages.buildPythonApplication { + inherit pname version; + + src = fetchFromGitHub { + owner = "NanoVNA-Saver"; + repo = pname; + rev = "v${version}"; + sha256 = "0c22ckyypg91gfb2sdc684msw28nnb6r8cq3b362gafvv00a35mi"; + }; + + nativeBuildInputs = [ wrapQtAppsHook ]; + + propagatedBuildInputs = with python3Packages; [ + cython + scipy_1_4 + pyqt5 + pyserial + numpy + ]; + + doCheck = false; + + dontWrapGApps = true; + dontWrapQtApps = true; + + postFixup = '' + wrapProgram $out/bin/NanoVNASaver \ + "''${gappsWrapperArgs[@]}" \ + "''${qtWrapperArgs[@]}" + ''; + + meta = with lib; { + homepage = "https://github.com/NanoVNA-Saver/nanovna-saver"; + description = + "A tool for reading, displaying and saving data from the NanoVNA"; + longDescription = '' + A multiplatform tool to save Touchstone files from the NanoVNA, sweep + frequency spans in segments to gain more than 101 data points, and + generally display and analyze the resulting data. + ''; + license = licenses.gpl3Only; + maintainers = with maintainers; [ zaninime ]; + }; +} diff --git a/pkgs/applications/science/electronics/openhantek6022/default.nix b/pkgs/applications/science/electronics/openhantek6022/default.nix index ad8fa3c7a7a..acdac346fd3 100644 --- a/pkgs/applications/science/electronics/openhantek6022/default.nix +++ b/pkgs/applications/science/electronics/openhantek6022/default.nix @@ -2,13 +2,13 @@ mkDerivation rec { pname = "openhantek6022"; - version = "3.1.2"; + version = "3.1.3"; src = fetchFromGitHub { owner = "OpenHantek"; repo = "OpenHantek6022"; rev = version; - sha256 = "104j7d3i5y6jd20c2z3l10sr6sgdy8iki3g9mlwhddnr8x6nzc03"; + sha256 = "1n4l8ks5808d99zj1vj0ck0v1lb9s7iv3ahww7ximbf9iha39pbm"; }; nativeBuildInputs = [ cmake makeWrapper ]; diff --git a/pkgs/applications/science/logic/btor2tools/default.nix b/pkgs/applications/science/logic/btor2tools/default.nix index 714ab49524b..34c0dac2a17 100644 --- a/pkgs/applications/science/logic/btor2tools/default.nix +++ b/pkgs/applications/science/logic/btor2tools/default.nix @@ -27,7 +27,7 @@ stdenv.mkDerivation rec { description = "A generic parser and tool package for the BTOR2 format"; homepage = "https://github.com/Boolector/btor2tools"; license = licenses.mit; - platforms = platforms.linux; + platforms = platforms.unix; maintainers = with maintainers; [ thoughtpolice ]; }; } diff --git a/pkgs/applications/science/logic/coq/default.nix b/pkgs/applications/science/logic/coq/default.nix index 946cba41b14..9b7e007ce50 100644 --- a/pkgs/applications/science/logic/coq/default.nix +++ b/pkgs/applications/science/logic/coq/default.nix @@ -109,7 +109,7 @@ self = stdenv.mkDerivation { nativeBuildInputs = [ pkgconfig ] ++ stdenv.lib.optional (!versionAtLeast "8.6") gnumake42 ; - buildInputs = [ ncurses ocamlPackages.ocaml ocamlPackages.findlib ] + buildInputs = [ ncurses ] ++ stdenv.lib.optional (!versionAtLeast "8.10") ocamlPackages.camlp5 ++ stdenv.lib.optional (!versionAtLeast "8.12") ocamlPackages.num ++ stdenv.lib.optionals buildIde @@ -117,7 +117,10 @@ self = stdenv.mkDerivation { then [ ocamlPackages.lablgtk3-sourceview3 glib gnome3.defaultIconTheme wrapGAppsHook ] else [ ocamlPackages.lablgtk ]); - propagatedBuildInputs = stdenv.lib.optional (versionAtLeast "8.12") ocamlPackages.num; + propagatedBuildInputs = [ ocamlPackages.ocaml ocamlPackages.findlib ] + ++ stdenv.lib.optional (versionAtLeast "8.12") ocamlPackages.num; + + propagatedUserEnvPkgs = [ ocamlPackages.ocaml ocamlPackages.findlib ]; postPatch = '' UNAME=$(type -tp uname) diff --git a/pkgs/applications/science/logic/coq2html/default.nix b/pkgs/applications/science/logic/coq2html/default.nix index 2e56eda893e..e53e8e7392c 100644 --- a/pkgs/applications/science/logic/coq2html/default.nix +++ b/pkgs/applications/science/logic/coq2html/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchgit, ocaml }: -let +let version = "20170720"; in @@ -22,7 +22,7 @@ stdenv.mkDerivation { ''; meta = with stdenv.lib; { - description = "coq2html is an HTML documentation generator for Coq source files"; + description = "HTML documentation generator for Coq source files"; longDescription = '' coq2html is an HTML documentation generator for Coq source files. It is an alternative to the standard coqdoc documentation generator diff --git a/pkgs/applications/science/logic/cryptoverif/default.nix b/pkgs/applications/science/logic/cryptoverif/default.nix index 6877060d36d..28295ea2892 100644 --- a/pkgs/applications/science/logic/cryptoverif/default.nix +++ b/pkgs/applications/science/logic/cryptoverif/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "cryptoverif"; - version = "2.01pl1"; + version = "2.03pl1"; src = fetchurl { url = "http://prosecco.gforge.inria.fr/personal/bblanche/cryptoverif/cryptoverif${version}.tar.gz"; - sha256 = "1bkmrv3wsy8mwhrxd3z3br9zgv37c2w6443rm4s9jl0aphcgnbiw"; + sha256 = "0q7qa1qm7mbky3m36445gdmgmkb9mrhrdsk7mmwn8fzw0rfc6z00"; }; buildInputs = [ ocaml ]; diff --git a/pkgs/applications/science/logic/lean/default.nix b/pkgs/applications/science/logic/lean/default.nix index 32a75cabc13..eae2e384df4 100644 --- a/pkgs/applications/science/logic/lean/default.nix +++ b/pkgs/applications/science/logic/lean/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "lean"; - version = "3.19.0"; + version = "3.21.0"; src = fetchFromGitHub { owner = "leanprover-community"; repo = "lean"; rev = "v${version}"; - sha256 = "1dybq6104vc62x620izgblfd8dqc4ynaiw8ml07km78lq38anm6v"; + sha256 = "1c7f2x6hdamjkr50761gcb5mg8hhlc75k1mf18vn1k9zsy1gxlgz"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/science/logic/ott/default.nix b/pkgs/applications/science/logic/ott/default.nix index ecc253a64d9..48ad63eaa99 100644 --- a/pkgs/applications/science/logic/ott/default.nix +++ b/pkgs/applications/science/logic/ott/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { postInstall = "opaline -prefix $out"; meta = { - description = "Ott: tool for the working semanticist"; + description = "A tool for the working semanticist"; longDescription = '' Ott is a tool for writing definitions of programming languages and calculi. It takes as input a definition of a language syntax and diff --git a/pkgs/applications/science/machine-learning/labelimg/default.nix b/pkgs/applications/science/machine-learning/labelimg/default.nix index 05c56b0b095..18c304e8316 100644 --- a/pkgs/applications/science/machine-learning/labelimg/default.nix +++ b/pkgs/applications/science/machine-learning/labelimg/default.nix @@ -28,7 +28,7 @@ makeWrapperArgs+=("''${qtWrapperArgs[@]}") ''; meta = with stdenv.lib; { - description = "LabelImg is a graphical image annotation tool and label object bounding boxes in images"; + description = "A graphical image annotation tool and label object bounding boxes in images"; homepage = "https://github.com/tzutalin/labelImg"; license = licenses.mit; platforms = platforms.linux; diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix index 717b240c1cc..25ee66e8f75 100644 --- a/pkgs/applications/science/math/R/default.nix +++ b/pkgs/applications/science/math/R/default.nix @@ -12,11 +12,11 @@ assert (!blas.isILP64) && (!lapack.isILP64); stdenv.mkDerivation rec { - name = "R-4.0.2"; + name = "R-4.0.3"; src = fetchurl { url = "https://cran.r-project.org/src/base/R-4/${name}.tar.gz"; - sha256 = "0xdy3dy2bzdiba8z94hjykyra8si8a5q15s0bri7c26scjrymg6k"; + sha256 = "03cypg2qf7v9mq9mr9alz9w5y9m5kdgwbc97bp26pyymg253m609"; }; dontUseImakeConfigure = true; diff --git a/pkgs/applications/science/math/bliss/default.nix b/pkgs/applications/science/math/bliss/default.nix index 361b0884662..9ab90134aad 100644 --- a/pkgs/applications/science/math/bliss/default.nix +++ b/pkgs/applications/science/math/bliss/default.nix @@ -22,14 +22,14 @@ stdenv.mkDerivation rec { installPhase = '' mkdir -p $out/bin $out/share/doc/bliss $out/lib $out/include/bliss - mv bliss $out/bin + mv bliss $out/bin mv html/* COPYING* $out/share/doc/bliss mv *.a $out/lib mv *.h *.hh $out/include/bliss ''; meta = with stdenv.lib; { - description = "bliss is an open source tool for computing automorphism groups and canonical forms of graphs. It has both a command line user interface as well as C++ and C programming language APIs."; + description = "An open source tool for computing automorphism groups and canonical forms of graphs. It has both a command line user interface as well as C++ and C programming language APIs"; homepage = "http://www.tcs.hut.fi/Software/bliss/"; license = licenses.lgpl3; platforms = [ "i686-linux" "x86_64-linux" ]; diff --git a/pkgs/applications/science/math/gfan/default.nix b/pkgs/applications/science/math/gfan/default.nix index adac92f376c..7e2a4625d30 100644 --- a/pkgs/applications/science/math/gfan/default.nix +++ b/pkgs/applications/science/math/gfan/default.nix @@ -8,11 +8,15 @@ stdenv.mkDerivation rec { sha256 = "02pihqb1lb76a0xbfwjzs1cd6ay3ldfxsm8dvsbl6qs3vkjxax56"; }; - patchPhase = stdenv.lib.optionalString stdenv.cc.isClang '' + patches = [ + ./gfan-0.6.2-cddlib-prefix.patch + ]; + + postPatch = stdenv.lib.optionalString stdenv.cc.isClang '' substituteInPlace Makefile --replace "-fno-guess-branch-probability" "" ''; - buildFlags = [ "CC=cc" "CXX=c++" "cddnoprefix=1" ]; + buildFlags = [ "CC=cc" "CXX=c++" ]; installFlags = [ ''PREFIX=$(out)'' ]; buildInputs = [ gmp mpir cddlib ]; diff --git a/pkgs/applications/science/math/gfan/gfan-0.6.2-cddlib-prefix.patch b/pkgs/applications/science/math/gfan/gfan-0.6.2-cddlib-prefix.patch new file mode 100644 index 00000000000..8a96a991cf7 --- /dev/null +++ b/pkgs/applications/science/math/gfan/gfan-0.6.2-cddlib-prefix.patch @@ -0,0 +1,55 @@ +diff -ru gfan0.6.2.orig/src/app_librarytest.cpp gfan0.6.2/src/app_librarytest.cpp +--- gfan0.6.2.orig/src/app_librarytest.cpp 2020-10-19 08:41:27.981863500 +0900 ++++ gfan0.6.2/src/app_librarytest.cpp 2020-10-19 08:42:44.551863500 +0900 +@@ -12,8 +12,8 @@ + #include "setoper.h" + #include "cdd.h" + #else +-#include "cdd/setoper.h" +-#include "cdd/cdd.h" ++#include "cddlib/setoper.h" ++#include "cddlib/cdd.h" + #endif + #include + #include +diff -ru gfan0.6.2.orig/src/gfanlib_zcone.cpp gfan0.6.2/src/gfanlib_zcone.cpp +--- gfan0.6.2.orig/src/gfanlib_zcone.cpp 2020-10-19 08:41:27.981863500 +0900 ++++ gfan0.6.2/src/gfanlib_zcone.cpp 2020-10-19 08:42:44.571863500 +0900 +@@ -16,8 +16,8 @@ + #include "setoper.h" + #include "cdd.h" + #else +-#include "cdd/setoper.h" +-#include "cdd/cdd.h" ++#include "cddlib/setoper.h" ++#include "cddlib/cdd.h" + #endif + //} + +@@ -52,8 +52,8 @@ + "dd_free_global_constants()\n" + "in your deinitialisation code (only available for cddlib version>=094d).\n" + "This requires the header includes:\n" +- "#include \"cdd/setoper.h\"\n" +- "#include \"cdd/cdd.h\"\n" ++ "#include \"cddlib/setoper.h\"\n" ++ "#include \"cddlib/cdd.h\"\n" + "\n" + "Alternatively, you may call gfan:initializeCddlibIfRequired() and deinitializeCddlibIfRequired()\n" + "if gfanlib is the only code using cddlib. If at some point cddlib is no longer required by gfanlib\n" +diff -ru gfan0.6.2.orig/src/lp_cdd.cpp gfan0.6.2/src/lp_cdd.cpp +--- gfan0.6.2.orig/src/lp_cdd.cpp 2020-10-19 08:41:27.991863500 +0900 ++++ gfan0.6.2/src/lp_cdd.cpp 2020-10-19 08:42:44.571863500 +0900 +@@ -5,9 +5,9 @@ + #include "cdd.h" + #include "cdd_f.h" + #else +-#include "cdd/setoper.h" +-#include "cdd/cdd.h" +-#include "cdd/cdd_f.h" ++#include "cddlib/setoper.h" ++#include "cddlib/cdd.h" ++#include "cddlib/cdd_f.h" + #endif + //} + #include "termorder.h" diff --git a/pkgs/applications/science/math/maxima/5.41.nix b/pkgs/applications/science/math/maxima/5.41.nix deleted file mode 100644 index 829dffc6116..00000000000 --- a/pkgs/applications/science/math/maxima/5.41.nix +++ /dev/null @@ -1,102 +0,0 @@ -{ stdenv, fetchurl, fetchpatch, sbcl, texinfo, perl, python, makeWrapper, rlwrap ? null -, tk ? null, gnuplot ? null, ecl ? null, ecl-fasl ? false -}: - -let - name = "maxima"; - # old version temporarily kept for sage, see discussion at - # https://github.com/NixOS/nixpkgs/commit/82254747af35f3e0e0d6f78023ded3a81e25331b - version = "5.41.0"; - - searchPath = - stdenv.lib.makeBinPath - (stdenv.lib.filter (x: x != null) [ sbcl ecl rlwrap tk gnuplot ]); -in -stdenv.mkDerivation ({ - inherit version; - name = "${name}-${version}"; - - src = fetchurl { - url = "mirror://sourceforge/${name}/${name}-${version}.tar.gz"; - sha256 = "0x0n81z0s4pl8nwpf7ivlsbvsdphm9w42250g7qdkizl0132by6s"; - }; - - buildInputs = stdenv.lib.filter (x: x != null) [ - sbcl ecl texinfo perl python makeWrapper - ]; - - postInstall = '' - # Make sure that maxima can find its runtime dependencies. - for prog in "$out/bin/"*; do - wrapProgram "$prog" --prefix PATH ":" "$out/bin:${searchPath}" - done - # Move emacs modules and documentation into the right place. - mkdir -p $out/share/emacs $out/share/doc - ln -s ../maxima/${version}/emacs $out/share/emacs/site-lisp - ln -s ../maxima/${version}/doc $out/share/doc/maxima - '' - + (stdenv.lib.optionalString ecl-fasl '' - cp src/binary-ecl/maxima.fas* "$out/lib/maxima/${version}/binary-ecl/" - '') - ; - - patches = [ - # fix path to info dir (see https://trac.sagemath.org/ticket/11348) - (fetchpatch { - url = "https://git.sagemath.org/sage.git/plain/build/pkgs/maxima/patches/infodir.patch?id=07d6c37d18811e2b377a9689790a7c5e24da16ba"; - sha256 = "09v64n60f7i6frzryrj0zd056lvdpms3ajky4f9p6kankhbiv21x"; - }) - - # fix https://sourceforge.net/p/maxima/bugs/2596/ - (fetchpatch { - url = "https://git.sagemath.org/sage.git/plain/build/pkgs/maxima/patches/matrixexp.patch?id=07d6c37d18811e2b377a9689790a7c5e24da16ba"; - sha256 = "06961hn66rhjijfvyym21h39wk98sfxhp051da6gz0n9byhwc6zg"; - }) - - # undo https://sourceforge.net/p/maxima/code/ci/f5e9b0f7eb122c4e48ea9df144dd57221e5ea0ca, see see https://trac.sagemath.org/ticket/13364#comment:93 - (fetchpatch { - url = "https://git.sagemath.org/sage.git/plain/build/pkgs/maxima/patches/undoing_true_false_printing_patch.patch?id=07d6c37d18811e2b377a9689790a7c5e24da16ba"; - sha256 = "0fvi3rcjv6743sqsbgdzazy9jb6r1p1yq63zyj9fx42wd1hgf7yx"; - }) - - # upstream bug https://sourceforge.net/p/maxima/bugs/2520/ (not fixed) - # introduced in https://trac.sagemath.org/ticket/13364 - (fetchpatch { - url = "https://git.sagemath.org/sage.git/plain/build/pkgs/maxima/patches/0001-taylor2-Avoid-blowing-the-stack-when-diff-expand-isn.patch?id=07d6c37d18811e2b377a9689790a7c5e24da16ba"; - sha256 = "0xa0b6cr458zp7lc7qi0flv5ar0r3ivsqhjl0c3clv86di2y522d"; - }) - ] ++ stdenv.lib.optionals ecl-fasl [ - # build fasl, needed for ECL support - (fetchpatch { - url = "https://git.sagemath.org/sage.git/plain/build/pkgs/maxima/patches/maxima.system.patch?id=07d6c37d18811e2b377a9689790a7c5e24da16ba"; - sha256 = "18zafig8vflhkr80jq2ivk46k92dkszqlyq8cfmj0b2vcfjwwbar"; - }) - # There are some transient test failures. I hope this disables all those tests. - # If those test failures ever happen in the non-ecl version, that should be - # reportetd upstream. - ./known-ecl-failures.patch - ]; - - # Failures in the regression test suite won't abort the build process. We run - # the suite only so that potential errors show up in the build log. See also: - # https://sourceforge.net/tracker/?func=detail&aid=3365831&group_id=4933&atid=104933. - doCheck = true; - - enableParallelBuilding = true; - - meta = { - description = "Computer algebra system"; - homepage = "http://maxima.sourceforge.net"; - license = stdenv.lib.licenses.gpl2; - - longDescription = '' - Maxima is a fairly complete computer algebra system written in - lisp with an emphasis on symbolic computation. It is based on - DOE-MACSYMA and licensed under the GPL. Its abilities include - symbolic integration, 3D plotting, and an ODE solver. - ''; - - platforms = stdenv.lib.platforms.unix; - maintainers = [ stdenv.lib.maintainers.peti ]; - }; -}) diff --git a/pkgs/applications/science/math/maxima/known-ecl-failures.patch b/pkgs/applications/science/math/maxima/known-ecl-failures.patch deleted file mode 100644 index f1d612d993e..00000000000 --- a/pkgs/applications/science/math/maxima/known-ecl-failures.patch +++ /dev/null @@ -1,21 +0,0 @@ -diff --git a/tests/testsuite.lisp b/tests/testsuite.lisp -index 45a81f4..36c35b8 100644 ---- a/tests/testsuite.lisp -+++ b/tests/testsuite.lisp -@@ -25,13 +25,14 @@ - ((mlist simp) "rtest10" 24 25) - ((mlist) "rtest11" #+(or gcl cmucl ccl64) 158 #+(or gcl cmucl ccl64) 174 #+gcl 175) - "rtest13" "rtest13s" -- "rtest14" -+ ;; "rtest14" ;; some tests sometimes fail with ecl, hard to reproduce. Observed failing: 250, 267, 297, 307, 310, 312, 315, 319 - "rtest15" - ;; ccl versions 1.11 and earlier fail test 50. Mark it as a - ;; known failure. Presumably 1.12 will have this fixed. - ((mlist simp) "rtest16" #+ccl 50) - "rtestode" "rtestode_zp" -- "rtest3" "rtest8" -+ "rtest3" -+ ((mlist simp) "rtest8" 104) ;; fails with ecl - ((mlist simp) "rtest12" 76 78) - "rexamples" - ((mlist simp) "rtesthyp" 105 112 113 123 124 128) diff --git a/pkgs/applications/science/math/rofi-calc/default.nix b/pkgs/applications/science/math/rofi-calc/default.nix index 40b2711ff65..ebf2d2f0475 100644 --- a/pkgs/applications/science/math/rofi-calc/default.nix +++ b/pkgs/applications/science/math/rofi-calc/default.nix @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { pname = "rofi-calc"; - version = "1.8"; + version = "1.9"; src = fetchFromGitHub { owner = "svenstaro"; repo = pname; rev = "v${version}"; - sha256 = "0vwb9c3xvd2cms6cw8j8parg7w4bsxvvrd1wgggr8sz2p8rrvy5p"; + sha256 = "ZGY4ZtAG/ZnEnC80modZBV4RdRQElbkjeoKCEFVrncE="; }; nativeBuildInputs = [ @@ -48,7 +48,7 @@ stdenv.mkDerivation rec { homepage = "https://github.com/svenstaro/rofi-calc"; license = licenses.mit; maintainers = with maintainers; [ luc65r albakham ]; - platforms = [ "x86_64-linux" "x86_64-darwin" ]; + platforms = with platforms; linux; }; } diff --git a/pkgs/applications/science/misc/openmodelica/default.nix b/pkgs/applications/science/misc/openmodelica/default.nix index 50d4dcc1a9f..268ae53401f 100644 --- a/pkgs/applications/science/misc/openmodelica/default.nix +++ b/pkgs/applications/science/misc/openmodelica/default.nix @@ -45,7 +45,7 @@ stdenv.mkDerivation { ''; meta = with stdenv.lib; { - description = "OpenModelica is an open-source Modelica-based modeling and simulation environment"; + description = "An open-source Modelica-based modeling and simulation environment"; homepage = "https://openmodelica.org"; license = licenses.gpl3; maintainers = with maintainers; [ smironov ]; diff --git a/pkgs/applications/science/physics/elmerfem/default.nix b/pkgs/applications/science/physics/elmerfem/default.nix index 46cc32fa168..a76fe3a7277 100644 --- a/pkgs/applications/science/physics/elmerfem/default.nix +++ b/pkgs/applications/science/physics/elmerfem/default.nix @@ -40,7 +40,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://elmerfem.org/"; - description = "A finite element software for multiphysical problems."; + description = "A finite element software for multiphysical problems"; platforms = platforms.unix; maintainers = [ maintainers.wulfsta ]; license = licenses.lgpl21; diff --git a/pkgs/applications/science/physics/sherpa/default.nix b/pkgs/applications/science/physics/sherpa/default.nix index a672272e9e6..93e402ec3ce 100644 --- a/pkgs/applications/science/physics/sherpa/default.nix +++ b/pkgs/applications/science/physics/sherpa/default.nix @@ -9,6 +9,10 @@ stdenv.mkDerivation rec { sha256 = "1iwa17s8ipj6a2b8zss5csb1k5y9s5js38syvq932rxcinbyjsl4"; }; + postPatch = '' + sed -ie '/sys\/sysctl.h/d' ATOOLS/Org/Run_Parameter.C + ''; + buildInputs = [ gfortran sqlite lhapdf rivet ]; enableParallelBuilding = true; diff --git a/pkgs/applications/science/physics/xfitter/default.nix b/pkgs/applications/science/physics/xfitter/default.nix index b992851e40a..cbb097350c7 100644 --- a/pkgs/applications/science/physics/xfitter/default.nix +++ b/pkgs/applications/science/physics/xfitter/default.nix @@ -1,4 +1,6 @@ -{ stdenv, fetchurl, apfel, apfelgrid, applgrid, blas, gfortran, lhapdf, lapack, libyaml, lynx, mela, root5, qcdnum, which }: +{ stdenv, fetchurl, apfel, apfelgrid, applgrid, blas, gfortran, lhapdf, lapack, libyaml, lynx +, mela, root5, qcdnum, which, libtirpc +}: stdenv.mkDerivation rec { pname = "xfitter"; @@ -37,7 +39,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ gfortran which ]; buildInputs = - [ apfel apfelgrid applgrid blas lhapdf lapack mela root5 qcdnum ] + [ apfel apfelgrid applgrid blas lhapdf lapack mela root5 qcdnum libtirpc ] # pdf2yaml requires fmemopen and open_memstream which are not readily available on Darwin ++ stdenv.lib.optional (!stdenv.isDarwin) libyaml ; @@ -47,6 +49,9 @@ stdenv.mkDerivation rec { hardeningDisable = [ "format" ]; + NIX_CFLAGS_COMPILE = [ "-I${libtirpc.dev}/include/tirpc" ]; + NIX_LDFLAGS = [ "-ltirpc" ]; + meta = with stdenv.lib; { description = "The xFitter project is an open source QCD fit framework ready to extract PDFs and assess the impact of new data"; license = licenses.gpl3; diff --git a/pkgs/applications/science/programming/scyther/default.nix b/pkgs/applications/science/programming/scyther/default.nix index 5cfe081072a..ca6b57de611 100644 --- a/pkgs/applications/science/programming/scyther/default.nix +++ b/pkgs/applications/science/programming/scyther/default.nix @@ -13,7 +13,7 @@ let }; meta = with lib; { - description = "Scyther is a tool for the automatic verification of security protocols."; + description = "A tool for the automatic verification of security protocols"; homepage = "https://www.cs.ox.ac.uk/people/cas.cremers/scyther/"; license = licenses.gpl2; maintainers = with maintainers; [ infinisil ]; diff --git a/pkgs/applications/science/robotics/mavproxy/default.nix b/pkgs/applications/science/robotics/mavproxy/default.nix index c354dad8042..9c7166afc2a 100644 --- a/pkgs/applications/science/robotics/mavproxy/default.nix +++ b/pkgs/applications/science/robotics/mavproxy/default.nix @@ -3,11 +3,11 @@ buildPythonApplication rec { pname = "MAVProxy"; - version = "1.8.19"; + version = "1.8.22"; src = fetchPypi { inherit pname version; - sha256 = "1rbq2nm01212rp5xbl8p8kjl2mpgfppkwjsq3lnfw1v6g0m4359h"; + sha256 = "87d7f9c0b8f4f1db3ce3521f67cd244fe3b89ffead797e92f35a7f71bbe8b958"; }; propagatedBuildInputs = [ diff --git a/pkgs/applications/system/glances/default.nix b/pkgs/applications/system/glances/default.nix index 6b77914539c..b0bd5cc8b15 100644 --- a/pkgs/applications/system/glances/default.nix +++ b/pkgs/applications/system/glances/default.nix @@ -4,6 +4,7 @@ , bottle, pysnmp , hddtemp , netifaces # IP module +, py-cpuinfo }: buildPythonApplication rec { @@ -41,6 +42,7 @@ buildPythonApplication rec { psutil pysnmp setuptools + py-cpuinfo ] ++ lib.optional stdenv.isLinux hddtemp; preConfigure = '' diff --git a/pkgs/applications/misc/alacritty/default.nix b/pkgs/applications/terminal-emulators/alacritty/default.nix similarity index 100% rename from pkgs/applications/misc/alacritty/default.nix rename to pkgs/applications/terminal-emulators/alacritty/default.nix diff --git a/pkgs/applications/misc/aminal/default.nix b/pkgs/applications/terminal-emulators/aminal/default.nix similarity index 100% rename from pkgs/applications/misc/aminal/default.nix rename to pkgs/applications/terminal-emulators/aminal/default.nix diff --git a/pkgs/applications/misc/cool-retro-term/default.nix b/pkgs/applications/terminal-emulators/cool-retro-term/default.nix similarity index 100% rename from pkgs/applications/misc/cool-retro-term/default.nix rename to pkgs/applications/terminal-emulators/cool-retro-term/default.nix diff --git a/pkgs/applications/misc/eterm/default.nix b/pkgs/applications/terminal-emulators/eterm/default.nix similarity index 100% rename from pkgs/applications/misc/eterm/default.nix rename to pkgs/applications/terminal-emulators/eterm/default.nix diff --git a/pkgs/applications/misc/evilvte/default.nix b/pkgs/applications/terminal-emulators/evilvte/default.nix similarity index 100% rename from pkgs/applications/misc/evilvte/default.nix rename to pkgs/applications/terminal-emulators/evilvte/default.nix diff --git a/pkgs/applications/misc/foot/default.nix b/pkgs/applications/terminal-emulators/foot/default.nix similarity index 89% rename from pkgs/applications/misc/foot/default.nix rename to pkgs/applications/terminal-emulators/foot/default.nix index 02909ee1f2f..3d95f7c5772 100644 --- a/pkgs/applications/misc/foot/default.nix +++ b/pkgs/applications/terminal-emulators/foot/default.nix @@ -5,12 +5,12 @@ stdenv.mkDerivation rec { pname = "foot"; - version = "1.4.4"; + version = "1.5.1"; src = fetchgit { url = "https://codeberg.org/dnkl/foot.git"; - rev = "${version}"; - sha256 = "1cr4sz075v18clh8nlvgyxlbvfkhbsg0qrqgnclip5rwa24ry1lg"; + rev = version; + sha256 = "sha256-GAk2qkrgCNILJOeRcn1NT4t3w+R6WFTZ1goOhBEwKwc="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/misc/guake/default.nix b/pkgs/applications/terminal-emulators/guake/default.nix similarity index 100% rename from pkgs/applications/misc/guake/default.nix rename to pkgs/applications/terminal-emulators/guake/default.nix diff --git a/pkgs/applications/misc/havoc/default.nix b/pkgs/applications/terminal-emulators/havoc/default.nix similarity index 100% rename from pkgs/applications/misc/havoc/default.nix rename to pkgs/applications/terminal-emulators/havoc/default.nix diff --git a/pkgs/applications/misc/hyper/default.nix b/pkgs/applications/terminal-emulators/hyper/default.nix similarity index 100% rename from pkgs/applications/misc/hyper/default.nix rename to pkgs/applications/terminal-emulators/hyper/default.nix diff --git a/pkgs/applications/misc/iterm2/default.nix b/pkgs/applications/terminal-emulators/iterm2/default.nix similarity index 100% rename from pkgs/applications/misc/iterm2/default.nix rename to pkgs/applications/terminal-emulators/iterm2/default.nix diff --git a/pkgs/applications/misc/iterm2/disable_updates.patch b/pkgs/applications/terminal-emulators/iterm2/disable_updates.patch similarity index 100% rename from pkgs/applications/misc/iterm2/disable_updates.patch rename to pkgs/applications/terminal-emulators/iterm2/disable_updates.patch diff --git a/pkgs/applications/misc/kitty/default.nix b/pkgs/applications/terminal-emulators/kitty/default.nix similarity index 100% rename from pkgs/applications/misc/kitty/default.nix rename to pkgs/applications/terminal-emulators/kitty/default.nix diff --git a/pkgs/applications/misc/kitty/fix-paths.patch b/pkgs/applications/terminal-emulators/kitty/fix-paths.patch similarity index 100% rename from pkgs/applications/misc/kitty/fix-paths.patch rename to pkgs/applications/terminal-emulators/kitty/fix-paths.patch diff --git a/pkgs/applications/misc/lilyterm/default.nix b/pkgs/applications/terminal-emulators/lilyterm/default.nix similarity index 100% rename from pkgs/applications/misc/lilyterm/default.nix rename to pkgs/applications/terminal-emulators/lilyterm/default.nix diff --git a/pkgs/applications/misc/lxterminal/default.nix b/pkgs/applications/terminal-emulators/lxterminal/default.nix similarity index 100% rename from pkgs/applications/misc/lxterminal/default.nix rename to pkgs/applications/terminal-emulators/lxterminal/default.nix diff --git a/pkgs/applications/misc/lxterminal/respect-xml-catalog-files-var.patch b/pkgs/applications/terminal-emulators/lxterminal/respect-xml-catalog-files-var.patch similarity index 100% rename from pkgs/applications/misc/lxterminal/respect-xml-catalog-files-var.patch rename to pkgs/applications/terminal-emulators/lxterminal/respect-xml-catalog-files-var.patch diff --git a/pkgs/applications/misc/microcom/default.nix b/pkgs/applications/terminal-emulators/microcom/default.nix similarity index 100% rename from pkgs/applications/misc/microcom/default.nix rename to pkgs/applications/terminal-emulators/microcom/default.nix diff --git a/pkgs/applications/misc/mlterm/default.nix b/pkgs/applications/terminal-emulators/mlterm/default.nix similarity index 100% rename from pkgs/applications/misc/mlterm/default.nix rename to pkgs/applications/terminal-emulators/mlterm/default.nix diff --git a/pkgs/applications/misc/mrxvt/default.nix b/pkgs/applications/terminal-emulators/mrxvt/default.nix similarity index 100% rename from pkgs/applications/misc/mrxvt/default.nix rename to pkgs/applications/terminal-emulators/mrxvt/default.nix diff --git a/pkgs/applications/misc/nimmm/default.nix b/pkgs/applications/terminal-emulators/nimmm/default.nix similarity index 100% rename from pkgs/applications/misc/nimmm/default.nix rename to pkgs/applications/terminal-emulators/nimmm/default.nix diff --git a/pkgs/applications/misc/roxterm/default.nix b/pkgs/applications/terminal-emulators/roxterm/default.nix similarity index 100% rename from pkgs/applications/misc/roxterm/default.nix rename to pkgs/applications/terminal-emulators/roxterm/default.nix diff --git a/pkgs/applications/misc/rxvt-unicode-plugins/default.nix b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/default.nix similarity index 100% rename from pkgs/applications/misc/rxvt-unicode-plugins/default.nix rename to pkgs/applications/terminal-emulators/rxvt-unicode-plugins/default.nix diff --git a/pkgs/applications/misc/rxvt-unicode-plugins/urxvt-autocomplete-all-the-things/default.nix b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-autocomplete-all-the-things/default.nix similarity index 100% rename from pkgs/applications/misc/rxvt-unicode-plugins/urxvt-autocomplete-all-the-things/default.nix rename to pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-autocomplete-all-the-things/default.nix diff --git a/pkgs/applications/misc/rxvt-unicode-plugins/urxvt-bidi/default.nix b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-bidi/default.nix similarity index 100% rename from pkgs/applications/misc/rxvt-unicode-plugins/urxvt-bidi/default.nix rename to pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-bidi/default.nix diff --git a/pkgs/applications/misc/rxvt-unicode-plugins/urxvt-font-size/default.nix b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-font-size/default.nix similarity index 100% rename from pkgs/applications/misc/rxvt-unicode-plugins/urxvt-font-size/default.nix rename to pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-font-size/default.nix diff --git a/pkgs/applications/misc/rxvt-unicode-plugins/urxvt-perl/default.nix b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-perl/default.nix similarity index 100% rename from pkgs/applications/misc/rxvt-unicode-plugins/urxvt-perl/default.nix rename to pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-perl/default.nix diff --git a/pkgs/applications/misc/rxvt-unicode-plugins/urxvt-perls/default.nix b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-perls/default.nix similarity index 100% rename from pkgs/applications/misc/rxvt-unicode-plugins/urxvt-perls/default.nix rename to pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-perls/default.nix diff --git a/pkgs/applications/misc/rxvt-unicode-plugins/urxvt-resize-font/default.nix b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-resize-font/default.nix similarity index 100% rename from pkgs/applications/misc/rxvt-unicode-plugins/urxvt-resize-font/default.nix rename to pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-resize-font/default.nix diff --git a/pkgs/applications/misc/rxvt-unicode-plugins/urxvt-tabbedex/default.nix b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-tabbedex/default.nix similarity index 100% rename from pkgs/applications/misc/rxvt-unicode-plugins/urxvt-tabbedex/default.nix rename to pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-tabbedex/default.nix diff --git a/pkgs/applications/misc/rxvt-unicode-plugins/urxvt-theme-switch/default.nix b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-theme-switch/default.nix similarity index 100% rename from pkgs/applications/misc/rxvt-unicode-plugins/urxvt-theme-switch/default.nix rename to pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-theme-switch/default.nix diff --git a/pkgs/applications/misc/rxvt-unicode-plugins/urxvt-vtwheel/default.nix b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-vtwheel/default.nix similarity index 99% rename from pkgs/applications/misc/rxvt-unicode-plugins/urxvt-vtwheel/default.nix rename to pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-vtwheel/default.nix index aebbedacef6..eb520f38bed 100644 --- a/pkgs/applications/misc/rxvt-unicode-plugins/urxvt-vtwheel/default.nix +++ b/pkgs/applications/terminal-emulators/rxvt-unicode-plugins/urxvt-vtwheel/default.nix @@ -9,7 +9,7 @@ stdenv.mkDerivation { rev = "36d3e861664aeae36a45f96100f10f8fe2218035"; sha256 = "1h3vrsbli5q9kr84j5ijbivlhpwlh3l8cv233pg362v2zz4ja8i7"; }; - + installPhase = '' sed -i 's|#! perl|#! ${perl}/bin/perl|g' vtwheel mkdir -p $out/lib/urxvt/perl @@ -23,5 +23,5 @@ stdenv.mkDerivation { maintainers = with maintainers; [ danbst ]; platforms = with platforms; unix; }; - + } diff --git a/pkgs/applications/misc/rxvt-unicode/default.nix b/pkgs/applications/terminal-emulators/rxvt-unicode/default.nix similarity index 100% rename from pkgs/applications/misc/rxvt-unicode/default.nix rename to pkgs/applications/terminal-emulators/rxvt-unicode/default.nix diff --git a/pkgs/applications/misc/rxvt-unicode/patches/256-color-resources.patch b/pkgs/applications/terminal-emulators/rxvt-unicode/patches/256-color-resources.patch similarity index 100% rename from pkgs/applications/misc/rxvt-unicode/patches/256-color-resources.patch rename to pkgs/applications/terminal-emulators/rxvt-unicode/patches/256-color-resources.patch diff --git a/pkgs/applications/misc/rxvt-unicode/patches/9.06-font-width.patch b/pkgs/applications/terminal-emulators/rxvt-unicode/patches/9.06-font-width.patch similarity index 100% rename from pkgs/applications/misc/rxvt-unicode/patches/9.06-font-width.patch rename to pkgs/applications/terminal-emulators/rxvt-unicode/patches/9.06-font-width.patch diff --git a/pkgs/applications/misc/rxvt-unicode/patches/makefile-phony.patch b/pkgs/applications/terminal-emulators/rxvt-unicode/patches/makefile-phony.patch similarity index 100% rename from pkgs/applications/misc/rxvt-unicode/patches/makefile-phony.patch rename to pkgs/applications/terminal-emulators/rxvt-unicode/patches/makefile-phony.patch diff --git a/pkgs/applications/misc/rxvt-unicode/wrapper.nix b/pkgs/applications/terminal-emulators/rxvt-unicode/wrapper.nix similarity index 99% rename from pkgs/applications/misc/rxvt-unicode/wrapper.nix rename to pkgs/applications/terminal-emulators/rxvt-unicode/wrapper.nix index 38978799b5a..b03acb99530 100644 --- a/pkgs/applications/misc/rxvt-unicode/wrapper.nix +++ b/pkgs/applications/terminal-emulators/rxvt-unicode/wrapper.nix @@ -29,7 +29,7 @@ let # This provides simple way to customize urxvt using # the `.override` mechanism. wrapper = { configure, ... }: - let + let config = configure { inherit availablePlugins; }; plugins = config.plugins or (builtins.attrValues availablePlugins); extraDeps = config.extraDeps or [ ]; diff --git a/pkgs/applications/misc/rxvt/default.nix b/pkgs/applications/terminal-emulators/rxvt/default.nix similarity index 100% rename from pkgs/applications/misc/rxvt/default.nix rename to pkgs/applications/terminal-emulators/rxvt/default.nix diff --git a/pkgs/applications/terminal-emulators/sakura/default.nix b/pkgs/applications/terminal-emulators/sakura/default.nix new file mode 100644 index 00000000000..7cccec3b72f --- /dev/null +++ b/pkgs/applications/terminal-emulators/sakura/default.nix @@ -0,0 +1,50 @@ +{ stdenv +, fetchurl +, cmake +, pkgconfig +, gtk3 +, perl +, vte +, pcre2 +, glib +, makeWrapper +}: + +stdenv.mkDerivation rec { + pname = "sakura"; + version = "3.7.1"; + + src = fetchurl { + url = "https://launchpad.net/${pname}/trunk/${version}/+download/${pname}-${version}.tar.bz2"; + sha256 = "sha256-cppODnUKQpS9kFkkOqxU3yqAElAVn8VQtQsP4Carkos="; + }; + + nativeBuildInputs = [ cmake perl pkgconfig makeWrapper ]; + + buildInputs = [ gtk3 vte pcre2 glib ]; + + # Set path to gsettings-schemata so sakura knows + # where to find colorchooser, fontchooser etc. + postInstall = '' + wrapProgram $out/bin/sakura \ + --suffix XDG_DATA_DIRS : ${gtk3}/share/gsettings-schemas/${gtk3.name}/ + ''; + + meta = with stdenv.lib; { + homepage = "https://www.pleyades.net/david/projects/sakura"; + description = "A terminal emulator based on GTK and VTE"; + longDescription = '' + sakura is a terminal emulator based on GTK and VTE. It's a terminal + emulator with few dependencies, so you don't need a full GNOME desktop + installed to have a decent terminal emulator. Current terminal emulators + based on VTE are gnome-terminal, XFCE Terminal, TermIt and a small + sample program included in the vte sources. The differences between + sakura and the last one are that it uses a notebook to provide several + terminals in one window and adds a contextual menu with some basic + options. No more no less. + ''; + license = licenses.gpl2Only; + maintainers = with maintainers; [ astsmtl codyopel AndersonTorres ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/misc/st/default.nix b/pkgs/applications/terminal-emulators/st/default.nix similarity index 100% rename from pkgs/applications/misc/st/default.nix rename to pkgs/applications/terminal-emulators/st/default.nix diff --git a/pkgs/applications/misc/st/xst.nix b/pkgs/applications/terminal-emulators/st/xst.nix similarity index 100% rename from pkgs/applications/misc/st/xst.nix rename to pkgs/applications/terminal-emulators/st/xst.nix diff --git a/pkgs/applications/misc/stupidterm/default.nix b/pkgs/applications/terminal-emulators/stupidterm/default.nix similarity index 100% rename from pkgs/applications/misc/stupidterm/default.nix rename to pkgs/applications/terminal-emulators/stupidterm/default.nix diff --git a/pkgs/applications/misc/terminator/default.nix b/pkgs/applications/terminal-emulators/terminator/default.nix similarity index 100% rename from pkgs/applications/misc/terminator/default.nix rename to pkgs/applications/terminal-emulators/terminator/default.nix diff --git a/pkgs/applications/misc/terminus/default.nix b/pkgs/applications/terminal-emulators/terminus/default.nix similarity index 100% rename from pkgs/applications/misc/terminus/default.nix rename to pkgs/applications/terminal-emulators/terminus/default.nix diff --git a/pkgs/applications/misc/termite/add_errno_header.patch b/pkgs/applications/terminal-emulators/termite/add_errno_header.patch similarity index 100% rename from pkgs/applications/misc/termite/add_errno_header.patch rename to pkgs/applications/terminal-emulators/termite/add_errno_header.patch diff --git a/pkgs/applications/misc/termite/default.nix b/pkgs/applications/terminal-emulators/termite/default.nix similarity index 100% rename from pkgs/applications/misc/termite/default.nix rename to pkgs/applications/terminal-emulators/termite/default.nix diff --git a/pkgs/applications/misc/termite/remove_ldflags_macos.patch b/pkgs/applications/terminal-emulators/termite/remove_ldflags_macos.patch similarity index 100% rename from pkgs/applications/misc/termite/remove_ldflags_macos.patch rename to pkgs/applications/terminal-emulators/termite/remove_ldflags_macos.patch diff --git a/pkgs/applications/misc/termite/url_regexp_trailing.patch b/pkgs/applications/terminal-emulators/termite/url_regexp_trailing.patch similarity index 100% rename from pkgs/applications/misc/termite/url_regexp_trailing.patch rename to pkgs/applications/terminal-emulators/termite/url_regexp_trailing.patch diff --git a/pkgs/applications/misc/termite/wrapper.nix b/pkgs/applications/terminal-emulators/termite/wrapper.nix similarity index 100% rename from pkgs/applications/misc/termite/wrapper.nix rename to pkgs/applications/terminal-emulators/termite/wrapper.nix diff --git a/pkgs/applications/misc/termonad/default.nix b/pkgs/applications/terminal-emulators/termonad/default.nix similarity index 100% rename from pkgs/applications/misc/termonad/default.nix rename to pkgs/applications/terminal-emulators/termonad/default.nix diff --git a/pkgs/applications/misc/tilda/default.nix b/pkgs/applications/terminal-emulators/tilda/default.nix similarity index 100% rename from pkgs/applications/misc/tilda/default.nix rename to pkgs/applications/terminal-emulators/tilda/default.nix diff --git a/pkgs/applications/misc/tilix/default.nix b/pkgs/applications/terminal-emulators/tilix/default.nix similarity index 100% rename from pkgs/applications/misc/tilix/default.nix rename to pkgs/applications/terminal-emulators/tilix/default.nix diff --git a/pkgs/applications/terminal-emulators/wayst/default.nix b/pkgs/applications/terminal-emulators/wayst/default.nix new file mode 100644 index 00000000000..99ee326aebf --- /dev/null +++ b/pkgs/applications/terminal-emulators/wayst/default.nix @@ -0,0 +1,91 @@ +{ stdenv +, lib +, fetchFromGitHub +, pkgconfig +, freetype +, fontconfig +, libGL +, libX11 +, libXrandr +, libxcb +, libxkbcommon +, utf8proc +, wayland + +, libnotify +, xdg_utils +, makeDesktopItem +}: + +let + desktopItem = makeDesktopItem { + desktopName = "Wayst"; + name = "wayst"; + exec = "wayst"; + icon = "wayst"; + terminal = "false"; + categories = "System;TerminalEmulator"; + comment = "A simple terminal emulator"; + extraEntries = '' + GenericName=Terminal + Keywords=wayst;terminal; + ''; + }; +in +stdenv.mkDerivation rec { + pname = "wayst"; + version = "unstable-2020-10-12"; + + src = fetchFromGitHub { + owner = "91861"; + repo = pname; + rev = "b8c7ca00a785a748026ed1ba08bf3d19916ced18"; + hash = "sha256-wHAU1yxukxApzhLLLctZ/AYqF7t21HQc5omPBZyxra0="; + }; + + makeFlags = [ "INSTALL_DIR=\${out}/bin" ]; + + nativeBuildInputs = [ pkgconfig ]; + + buildInputs = [ + fontconfig + libX11 + freetype + libGL + libxcb + libxkbcommon + libXrandr + utf8proc + wayland + ]; + + # This patch forces the Makefile to use utf8proc + # The makefile relies on ldconfig to find the utf8proc libraries + # which is not possible on nixpkgs + patches = [ ./utf8proc.patch ]; + + postPatch = '' + substituteInPlace src/settings.c \ + --replace xdg-open ${xdg_utils}/bin/xdg-open + substituteInPlace src/main.c \ + --replace notify-send ${libnotify}/bin/notify-send + ''; + + preInstall = '' + mkdir -p $out/bin + ''; + + postInstall = '' + mkdir -p $out/share/applications + ln -s ${desktopItem}/share/applications/* $out/share/applications + install -D icons/wayst.svg $out/share/icons/hicolor/scalable/apps/wayst.svg + ''; + + meta = with lib; { + description = "A simple terminal emulator"; + homepage = "https://github.com/91861/wayst"; + license = licenses.mit; + platforms = platforms.linux; + maintainers = with maintainers; [ berbiche ]; + }; +} diff --git a/pkgs/applications/terminal-emulators/wayst/utf8proc.patch b/pkgs/applications/terminal-emulators/wayst/utf8proc.patch new file mode 100644 index 00000000000..0923c5dbe18 --- /dev/null +++ b/pkgs/applications/terminal-emulators/wayst/utf8proc.patch @@ -0,0 +1,24 @@ +commit caa5a6bed31937f2d1b322da204e11eae57a720f +Author: Nicolas Berbiche +Date: Tue Oct 20 18:14:44 2020 -0400 + + PATCH: use nixpkgs utf8proc + + This patch forces the Makefile to use utf8proc from `buildInputs`. + The Makefile relies on ldconfig to find the utf8proc libraries, + which is not possible with nixpkgs. + +diff --git a/Makefile b/Makefile +index caccdf7..90b11ea 100644 +--- a/Makefile ++++ b/Makefile +@@ -29,7 +29,7 @@ else + LDFLAGS = -O2 -flto + endif + +-ifeq ($(shell ldconfig -p | grep libutf8proc.so > /dev/null || echo fail),fail) ++ifeq (false,fail) + $(info libutf8proc not found. Support for language-specific combining characters and unicode normalization will be disabled.) + CFLAGS += -DNOUTF8PROC + else + diff --git a/pkgs/applications/misc/x3270/default.nix b/pkgs/applications/terminal-emulators/x3270/default.nix similarity index 100% rename from pkgs/applications/misc/x3270/default.nix rename to pkgs/applications/terminal-emulators/x3270/default.nix diff --git a/pkgs/applications/misc/xterm/default.nix b/pkgs/applications/terminal-emulators/xterm/default.nix similarity index 100% rename from pkgs/applications/misc/xterm/default.nix rename to pkgs/applications/terminal-emulators/xterm/default.nix diff --git a/pkgs/applications/misc/xterm/sixel-256.support.patch b/pkgs/applications/terminal-emulators/xterm/sixel-256.support.patch similarity index 100% rename from pkgs/applications/misc/xterm/sixel-256.support.patch rename to pkgs/applications/terminal-emulators/xterm/sixel-256.support.patch diff --git a/pkgs/applications/misc/xtermcontrol/default.nix b/pkgs/applications/terminal-emulators/xtermcontrol/default.nix similarity index 100% rename from pkgs/applications/misc/xtermcontrol/default.nix rename to pkgs/applications/terminal-emulators/xtermcontrol/default.nix diff --git a/pkgs/applications/misc/yaft/default.nix b/pkgs/applications/terminal-emulators/yaft/default.nix similarity index 100% rename from pkgs/applications/misc/yaft/default.nix rename to pkgs/applications/terminal-emulators/yaft/default.nix diff --git a/pkgs/applications/version-management/git-and-tools/default.nix b/pkgs/applications/version-management/git-and-tools/default.nix index 130ace63b4b..bb317b83c8d 100644 --- a/pkgs/applications/version-management/git-and-tools/default.nix +++ b/pkgs/applications/version-management/git-and-tools/default.nix @@ -34,6 +34,8 @@ let gh = callPackage ./gh { }; + ghorg = callPackage ./ghorg { }; + ghq = callPackage ./ghq { }; git = appendToName "minimal" gitBase; @@ -239,6 +241,8 @@ let transcrypt = callPackage ./transcrypt { }; + git-vanity-hash = callPackage ./git-vanity-hash { }; + ydiff = pkgs.python3.pkgs.toPythonApplication pkgs.python3.pkgs.ydiff; } // lib.optionalAttrs (config.allowAliases or true) (with self; { diff --git a/pkgs/applications/version-management/git-and-tools/gh/default.nix b/pkgs/applications/version-management/git-and-tools/gh/default.nix index e59ca6ac899..4fe805f752c 100644 --- a/pkgs/applications/version-management/git-and-tools/gh/default.nix +++ b/pkgs/applications/version-management/git-and-tools/gh/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "gh"; - version = "1.1.0"; + version = "1.2.0"; src = fetchFromGitHub { owner = "cli"; repo = "cli"; rev = "v${version}"; - sha256 = "1jf1y6135p30dlr42fnl0w7782fczizq8yya4bsd6xf66bcq0zzn"; + sha256 = "17hbgi1jh4p07r4p5mr7w7p01i6zzr28mn5i4jaki7p0jwfqbvvi"; }; - vendorSha256 = "12ka5x5m4h8dfpcdhfjc5lz6bm8pzfqkbhs9j3a8w08xsi93dvdz"; + vendorSha256 = "0ybbwbw4vdsxdq4w75s1i0dqad844sfgs69b3vlscwfm6g3i9h51"; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/applications/version-management/git-and-tools/ghorg/default.nix b/pkgs/applications/version-management/git-and-tools/ghorg/default.nix new file mode 100644 index 00000000000..fc2e660fa7a --- /dev/null +++ b/pkgs/applications/version-management/git-and-tools/ghorg/default.nix @@ -0,0 +1,37 @@ +{ stdenv, buildGoModule, fetchFromGitHub }: + +buildGoModule rec { + pname = "ghorg"; + version = "1.4.0"; + + src = fetchFromGitHub { + owner = "gabrie30"; + repo = "ghorg"; + rev = "${version}"; + sha256 = "0diwndkckv6fga45j9zngizycn5m71r67cziv0zrx6c66ssbj49w"; + }; + + doCheck = false; + vendorSha256 = null; + + subPackages = [ "." ]; + + buildFlagsArray = [ "-ldflags=-s -w -X main.version=${version}" ]; + + meta = with stdenv.lib; { + description = "Quickly clone an entire org/users repositories into one directory"; + longDescription = '' + ghorg allows you to quickly clone all of an orgs, or users repos into a + single directory. This can be useful in many situations including + - Searching an orgs/users codebase with ack, silver searcher, grep etc.. + - Bash scripting + - Creating backups + - Onboarding + - Performing Audits + ''; + homepage = "https://github.com/gabrie30/ghorg"; + license = licenses.asl20; + maintainers = with maintainers; [ vidbina ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/applications/version-management/git-and-tools/git-absorb/default.nix b/pkgs/applications/version-management/git-and-tools/git-absorb/default.nix index 18703403138..46a6f817417 100644 --- a/pkgs/applications/version-management/git-and-tools/git-absorb/default.nix +++ b/pkgs/applications/version-management/git-and-tools/git-absorb/default.nix @@ -2,20 +2,20 @@ rustPlatform.buildRustPackage rec { pname = "git-absorb"; - version = "0.6.4"; + version = "0.6.5"; src = fetchFromGitHub { owner = "tummychow"; repo = pname; rev = "refs/tags/${version}"; - sha256 = "01hf9hbrigqn4qcz6jmprp7by9nh55k1r2d11g7sil5fpw6m2j9k"; + sha256 = "12ih0gm07ddi86jy612f029nzav345v57pjajyy9lw017g6n6mjb"; }; nativeBuildInputs = [ installShellFiles ]; buildInputs = stdenv.lib.optionals stdenv.isDarwin [ libiconv Security ]; - cargoSha256 = "04dkfjb6pxqaalw2y6yli9q58g8x8ppfmibivpvqifk8r8dhkdqp"; + cargoSha256 = "0x2zcw0bpwqimvbb5xj8xawvl4jcvk5lj0y2mm5ncbdapzyqdsb2"; postInstall = '' installManPage Documentation/git-absorb.1 diff --git a/pkgs/applications/version-management/git-and-tools/git-vanity-hash/default.nix b/pkgs/applications/version-management/git-and-tools/git-vanity-hash/default.nix new file mode 100644 index 00000000000..839acc5cca5 --- /dev/null +++ b/pkgs/applications/version-management/git-and-tools/git-vanity-hash/default.nix @@ -0,0 +1,27 @@ +{ stdenv, fetchFromGitHub, rustPlatform }: + +rustPlatform.buildRustPackage rec { + pname = "git-vanity-hash"; + version = "2020-02-26-unstable"; + + src = fetchFromGitHub { + owner = "prasmussen"; + repo = "git-vanity-hash"; + rev = "000004122124005af8d118a3f379bfc6ecc1e7c7"; + sha256 = "1wf342zawbphlzvji0yba0qg4f6v67h81nhxqcsir132jv397ma7"; + }; + + cargoSha256 = "0mbdis1kxmgj3wlgznr9bqf5yv0jwlj2f63gr5c99ja0ijccp99h"; + + postInstall = '' + mkdir -p $out/share/doc/git-vanity-hash + cp README.md $out/share/doc/git-vanity-hash + ''; + + meta = with stdenv.lib; { + homepage = "https://github.com/prasmussen/git-vanity-hash"; + description = "Tool for creating commit hashes with a specific prefix"; + license = [ licenses.mit ]; + maintainers = [ maintainers.kaction ]; + }; +} diff --git a/pkgs/applications/version-management/git-and-tools/git/default.nix b/pkgs/applications/version-management/git-and-tools/git/default.nix index b0042b2ee9e..7e40366142a 100644 --- a/pkgs/applications/version-management/git-and-tools/git/default.nix +++ b/pkgs/applications/version-management/git-and-tools/git/default.nix @@ -155,12 +155,6 @@ stdenv.mkDerivation { ln -s $out/share/git/contrib/completion/git-completion.bash $out/share/bash-completion/completions/git mkdir -p $out/etc/bash_completion.d ln -s $out/share/git/contrib/completion/git-prompt.sh $out/etc/bash_completion.d/ - mkdir -p $out/share/zsh/site-functions - ln -s $out/share/git/contrib/completion/git-completion.zsh $out/share/zsh/site-functions/_git - - # Patch the zsh completion script so it can find the Bash completion script. - sed -i -e "/locations=(/a \${"\t\t"}'$out/share/git/contrib/completion/git-completion.bash'" \ - $out/share/git/contrib/completion/git-completion.zsh # grep is a runtime dependency, need to patch so that it's found substituteInPlace $out/libexec/git-core/git-sh-setup \ diff --git a/pkgs/applications/version-management/git-and-tools/gitstatus/default.nix b/pkgs/applications/version-management/git-and-tools/gitstatus/default.nix index 5b7dbc521f6..47d095b0f1c 100644 --- a/pkgs/applications/version-management/git-and-tools/gitstatus/default.nix +++ b/pkgs/applications/version-management/git-and-tools/gitstatus/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "gitstatus"; - version = "1.3.0"; + version = "1.3.1"; src = fetchFromGitHub { owner = "romkatv"; repo = "gitstatus"; rev = "v${version}"; - sha256 = "0zan1sa8c24hpqwj66y9srd4n15f4nk64fc5jrd4smgfgn22wph8"; + sha256 = "03zaywncds7pjrl07rvdf3fh39gnp2zfvgsf0afqwv317sgmgpzf"; }; buildInputs = [ (callPackage ./romkatv_libgit2.nix {}) ]; diff --git a/pkgs/applications/version-management/git-and-tools/gitstatus/romkatv_libgit2.nix b/pkgs/applications/version-management/git-and-tools/gitstatus/romkatv_libgit2.nix index 2f99c88a37b..9c74fa35752 100644 --- a/pkgs/applications/version-management/git-and-tools/gitstatus/romkatv_libgit2.nix +++ b/pkgs/applications/version-management/git-and-tools/gitstatus/romkatv_libgit2.nix @@ -16,7 +16,7 @@ libgit2.overrideAttrs (oldAttrs: { src = fetchFromGitHub { owner = "romkatv"; repo = "libgit2"; - rev = "tag-005f77dca6dbe8788e55139fa1199fc94cc04f9a"; - sha256 = "1h5bnisk4ljdpfzlv8g41m8js9841xyjhfywc5cn8pmyv58c50il"; + rev = "tag-82cefe2b42300224ad3c148f8b1a569757cc617a"; + sha256 = "1vhnqynqyxizzkq1h5dfjm75f0jm5637jh0gypwqqz2yjqrscza0"; }; }) diff --git a/pkgs/applications/version-management/git-and-tools/gitui/default.nix b/pkgs/applications/version-management/git-and-tools/gitui/default.nix index 25985ef0a23..6aad5b78fb6 100644 --- a/pkgs/applications/version-management/git-and-tools/gitui/default.nix +++ b/pkgs/applications/version-management/git-and-tools/gitui/default.nix @@ -1,24 +1,26 @@ -{ stdenv, rustPlatform, fetchFromGitHub, libiconv, Security }: - +{ stdenv, rustPlatform, fetchFromGitHub, libiconv, xorg, python3, Security }: rustPlatform.buildRustPackage rec { pname = "gitui"; - version = "0.9.1"; + version = "0.10.1"; src = fetchFromGitHub { owner = "extrawurst"; repo = pname; rev = "v${version}"; - sha256 = "0lxpdwpxizc4bczh5cl2x2xbbdam3fakvgcbbrdh43czgjwb4ds1"; + sha256 = "1ifwbi6nydh66z6cprjmz2qvy9z52rj9jg2xf054i249gy955hah"; }; - cargoSha256 = "14x0m3pq4gapgqaljxdwmr5pk9h209ls95an9xgrq0dj6apyimgx"; + cargoSha256 = "1454dn7k1fc4yxhbcmx0z3hj9d9srnlc2k1qp707h1vq46ib1rsf"; - buildInputs = stdenv.lib.optionals stdenv.isDarwin [ libiconv Security ]; + nativeBuildInputs = [ python3 ]; + buildInputs = [ ] + ++ stdenv.lib.optional stdenv.isLinux xorg.libxcb + ++ stdenv.lib.optionals stdenv.isDarwin [ libiconv Security ]; meta = with stdenv.lib; { description = "Blazing fast terminal-ui for git written in rust"; homepage = "https://github.com/extrawurst/gitui"; license = licenses.mit; - maintainers = with maintainers; [ filalex77 ]; + maintainers = with maintainers; [ filalex77 yanganto ]; }; } diff --git a/pkgs/applications/version-management/git-review/default.nix b/pkgs/applications/version-management/git-review/default.nix index c7702cfa195..d0bbca15ea1 100644 --- a/pkgs/applications/version-management/git-review/default.nix +++ b/pkgs/applications/version-management/git-review/default.nix @@ -1,6 +1,6 @@ -{ stdenv, fetchFromGitHub, pythonPackages} : +{ lib, fetchurl, buildPythonApplication, pbr, requests, setuptools }: -pythonPackages.buildPythonApplication rec { +buildPythonApplication rec { pname = "git-review"; version = "1.28.0"; @@ -8,21 +8,20 @@ pythonPackages.buildPythonApplication rec { # upstream repository (and we are installing from tarball instead) PBR_VERSION = version; - src = fetchFromGitHub { - owner = "openstack-infra"; - repo = pname; - rev = version; - sha256 = "1hgw1dkl94m3idv4izc7wf2j7al2c7nnsqywy7g53nzkv9pfv47s"; + src = fetchurl { + url = "https://opendev.org/opendev/${pname}/archive/${version}.tar.gz"; + sha256 = "1y1jzb0hlprynwwr4q5y4x06641qrhj0k69mclabnmhfam9g8ygm"; }; - propagatedBuildInputs = with pythonPackages; [ pbr requests setuptools ]; + propagatedBuildInputs = [ pbr requests setuptools ]; # Don't do tests because they require gerrit which is not packaged doCheck = false; - meta = { - homepage = "https://github.com/openstack-infra/git-review"; + meta = with lib; { + homepage = "https://opendev.org/opendev/git-review"; description = "Tool to submit code to Gerrit"; - license = stdenv.lib.licenses.asl20; + license = licenses.asl20; + maintainers = with maintainers; [ metadark ]; }; } diff --git a/pkgs/applications/version-management/git-up/default.nix b/pkgs/applications/version-management/git-up/default.nix index faed3d25a8a..2a0a97771cb 100644 --- a/pkgs/applications/version-management/git-up/default.nix +++ b/pkgs/applications/version-management/git-up/default.nix @@ -28,7 +28,7 @@ pythonPackages.buildPythonApplication rec { meta = with stdenv.lib; { homepage = "https://github.com/msiemens/PyGitUp"; - description = "A git pull replacement that rebases all local branches when pulling."; + description = "A git pull replacement that rebases all local branches when pulling"; license = licenses.mit; maintainers = with maintainers; [ peterhoeg ]; platforms = platforms.all; diff --git a/pkgs/applications/version-management/gitoxide/default.nix b/pkgs/applications/version-management/gitoxide/default.nix index b6b9c7e5660..0b9d29bd525 100644 --- a/pkgs/applications/version-management/gitoxide/default.nix +++ b/pkgs/applications/version-management/gitoxide/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "gitoxide"; - version = "0.4.0"; + version = "0.4.3"; src = fetchFromGitHub { owner = "Byron"; repo = "gitoxide"; rev = "v${version}"; - sha256 = "0sx3z9l9n9qq2zj91pgm7znhxjsj59zvwms3aivfglhawwj3iwyj"; + sha256 = "0ap5ih4s99c4ah95mcafqsvy4yhfqab6vg1c6ydzfa4czczgcxff"; }; - cargoSha256 = "0ykkh86p4csi0v3pb2idjk94w9m32a34a5qrvna7ml5yz84m8hva"; + cargoSha256 = "0vj7g2jhvd5d37rcq02hval9axpciwyqyd10z2a0bsvw0r4bh943"; nativeBuildInputs = [ pkg-config ]; buildInputs = [ openssl ]; diff --git a/pkgs/applications/version-management/nbstripout/default.nix b/pkgs/applications/version-management/nbstripout/default.nix index 07f9b442a74..3bea6d89334 100644 --- a/pkgs/applications/version-management/nbstripout/default.nix +++ b/pkgs/applications/version-management/nbstripout/default.nix @@ -2,7 +2,7 @@ with python.pkgs; buildPythonApplication rec { - version = "0.3.7"; + version = "0.3.9"; pname = "nbstripout"; # Mercurial should be added as a build input but because it's a Python @@ -14,7 +14,7 @@ buildPythonApplication rec { src = fetchPypi { inherit pname version; - sha256 = "13w2zhw8vrfv6637bw5ygygj1dky55fvvncz11hq0abwkkzb3wb2"; + sha256 = "b46dddbf78b8b137176bc72729124e378242ef9ce93af63f6e0a8c4850c972e7"; }; # for some reason, darwin uses /bin/sh echo native instead of echo binary, so diff --git a/pkgs/applications/version-management/p4/default.nix b/pkgs/applications/version-management/p4/default.nix index 3a397b5bf87..fd369601c6c 100644 --- a/pkgs/applications/version-management/p4/default.nix +++ b/pkgs/applications/version-management/p4/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "p4"; - version = "2020.1.1991450"; + version = "2020.1.2007551"; src = fetchurl { url = "https://cdist2.perforce.com/perforce/r20.1/bin.linux26x86_64/helix-core-server.tgz"; - sha256 = "0nhcxhwx3scx6vf7i2bc8j0b1l57lmq9bfy1cfbfbqasd3an721k"; + sha256 = "0ly9b838zrpp6841fzapizdd3xmria55bwfrh2j29qwxiwzqj80y"; }; sourceRoot = "."; diff --git a/pkgs/applications/version-management/sparkleshare/default.nix b/pkgs/applications/version-management/sparkleshare/default.nix index ef61d518a1e..8f77fdbe54c 100644 --- a/pkgs/applications/version-management/sparkleshare/default.nix +++ b/pkgs/applications/version-management/sparkleshare/default.nix @@ -81,7 +81,7 @@ stdenv.mkDerivation rec { ''; meta = { - description = "Share and collaborate by syncing with any Git repository instantly. Linux, macOS, and Windows."; + description = "Share and collaborate by syncing with any Git repository instantly. Linux, macOS, and Windows"; homepage = "https://sparkleshare.org"; license = lib.licenses.gpl3; maintainers = with lib.maintainers; [ kevincox ]; diff --git a/pkgs/applications/video/bombono/default.nix b/pkgs/applications/video/bombono/default.nix index 2ae3722fff2..05ba5ef19be 100644 --- a/pkgs/applications/video/bombono/default.nix +++ b/pkgs/applications/video/bombono/default.nix @@ -1,54 +1,80 @@ -{ stdenv, fetchFromGitHub, wrapGAppsHook, gtk2, boost, gtkmm2, scons, -mjpegtools, libdvdread, dvdauthor, gettext, dvdplusrwtools, libxmlxx, ffmpeg_3, -enca, pkgconfig, fetchpatch }: +{ stdenv +, fetchFromGitHub +, pkgconfig +, fetchpatch +, scons +, boost +, dvdauthor +, dvdplusrwtools +, enca +, ffmpeg_3 +, gettext +, gtk2 +, gtkmm2 +, libdvdread +, libxmlxx +, mjpegtools +, wrapGAppsHook +}: -let fetchPatchFromAur = {name, sha256}: -fetchpatch { - inherit name sha256; - url = "https://aur.archlinux.org/cgit/aur.git/plain/${name}?h=e6cc6bc80c672aaa1a2260abfe8823da299a192c"; -}; in +let + fetchPatchFromAur = {name, sha256}: + fetchpatch { + inherit name sha256; + url = "https://aur.archlinux.org/cgit/aur.git/plain/${name}?h=e6cc6bc80c672aaa1a2260abfe8823da299a192c"; + }; +in stdenv.mkDerivation rec { pname = "bombono"; version = "1.2.4"; + src = fetchFromGitHub { - owner = "muravjov"; + owner = "bombono-dvd"; repo = "bombono-dvd"; rev = version; - sha256 = "1lz1vik6abn1i1pvxhm55c9g47nxxv755wb2ijszwswwrwgvq5b9"; + sha256 = "sha256-aRW8H8+ca/61jGLxUs7u3R7yEiulwr5viMEuZWbc4dM="; }; patches = [ (fetchpatch { name = "bombono-dvd-1.2.4-scons3.patch"; url = "https://svnweb.mageia.org/packages/cauldron/bombono-dvd/current/SOURCES/bombono-dvd-1.2.4-scons-python3.patch?revision=1447925&view=co&pathrev=1484457"; - sha256 = "081116d0if6s2r1rgqfr1n5gl3kpvzk01pf4v2k7gg2rnid83qp4"; + sha256 = "sha256-5OKBWrRZvHem2MTdAObfdw76ig3Z4ZdDFtq4CJoJISA="; }) ] ++ (map fetchPatchFromAur [ - {name="fix_ffmpeg_codecid.patch"; sha256="1asfc0lqzk4gjssrvjmsi1xr53ygnsx2sh7c8yzp5r3j2bagxhp7";} - {name="fix_ptr2bool_cast.patch"; sha256="0iqzrmbg38ikh4x9cmx0v0rnm7a9lcq0kd8sh1z9yfmnz71qqahg";} - {name="fix_c++11_literal_warnings.patch"; sha256="1zbf12i77p0j0090pz5lzg4a7kyahahzqssybv7vi0xikwvw57w9";} - {name="autoptr2uniqueptr.patch"; sha256="0a3wvwfplmqvi8fnj929y85z3h1iq7baaz2d4v08h1q2wbmakqdm";} - {name="fix_deprecated_boost_api.patch"; sha256="184gdz3w95ihhsd8xscpwvq77xd4il47kvmv6wslax77xyw50gm8";} - {name="fix_throw_specifications.patch"; sha256="1f5gi3qwm843hsxvijq7sjy0s62xm7rnr1vdp7f242fi0ldq6c1n";} - {name="fix_operator_ambiguity.patch"; sha256="0r4scsbsqfg6wgzsbfxxpckamvgyrida0n1ypg1klx24pk5dc7n7";} - {name="fix_ffmpeg30.patch"; sha256="1irva7a9bpbzs60ga8ypa3la9y84i5rz20jnd721qmfqp2yip8dw";} + {name="fix_ffmpeg_codecid.patch"; sha256="sha256-58L+1BJy5HK/R+xALbq2z4+Se4i6yp21lo/MjylgTqs=";} + {name="fix_ptr2bool_cast.patch"; sha256="sha256-DyqMw/m2Op9+gBq1CTCjSZ1qM9igV5Y6gTOi8VbNH0c=";} + {name="fix_c++11_literal_warnings.patch"; sha256="sha256-iZ/CN5+xg7jPXl5r/KGCys+jyPu0/AsSABLcc6IIbv0=";} + {name="autoptr2uniqueptr.patch"; sha256="sha256-teGp6uICB4jAJk18pdbBMcDxC/JJJGkdihtXeh3ffCg=";} + {name="fix_deprecated_boost_api.patch"; sha256="sha256-qD5QuO/ndEU1N7vueQiNpPVz8OaX6Y6ahjCWxMdvj6A=";} + {name="fix_throw_specifications.patch"; sha256="sha256-NjCDGwXRCSLcuW2HbPOpXRgNvNQHy7i7hoOgyvGIr7g=";} + {name="fix_operator_ambiguity.patch"; sha256="sha256-xx7WyrxEdDrDuz5YoFrM/u2qJru9u6X/4+Y5rJdmmmQ=";} + {name="fix_ffmpeg30.patch"; sha256="sha256-vKEbvbjYVRzEaVYC8XOJBPmk6FDXI/WA0X/dldRRO8c=";} ]); nativeBuildInputs = [ wrapGAppsHook scons pkgconfig gettext ]; buildInputs = [ - gtk2 gtkmm2 mjpegtools libdvdread dvdauthor boost dvdplusrwtools - libxmlxx ffmpeg_3 enca - ]; + boost + dvdauthor + dvdplusrwtools + enca + ffmpeg_3 + gtk2 + gtkmm2 + libdvdread + libxmlxx + mjpegtools + ]; prefixKey = "PREFIX="; enableParallelBuilding = true; - meta = { + meta = with stdenv.lib; { description = "a DVD authoring program for personal computers"; - homepage = "http://www.bombono.org/"; - license = stdenv.lib.licenses.gpl2; - maintainers = with stdenv.lib.maintainers; [ symphorien ]; + homepage = "https://www.bombono.org/"; + license = licenses.gpl2Only; + maintainers = with maintainers; [ symphorien ]; }; } diff --git a/pkgs/applications/video/kodi/default.nix b/pkgs/applications/video/kodi/default.nix index 56788ae4f10..fcbb546a1fa 100644 --- a/pkgs/applications/video/kodi/default.nix +++ b/pkgs/applications/video/kodi/default.nix @@ -3,7 +3,7 @@ , libgcrypt, libgpgerror, libunistring , boost, avahi, lame, autoreconfHook , gettext, pcre-cpp, yajl, fribidi, which -, openssl, gperf, tinyxml2, taglib, libssh, swig, jre +, openssl, gperf, tinyxml2, taglib, libssh, swig, jre_headless , libxml2, systemd , alsaLib, libGLU, libGL, glew, fontconfig, freetype, ftgl , libjpeg, libpng, libtiff @@ -211,7 +211,7 @@ in stdenv.mkDerivation { which pkgconfig gnumake autoconf automake libtool # still needed for some components. Check if that is the case with 19.0 - jre yasm gettext python2Packages.python flatbuffers + jre_headless yasm gettext python2Packages.python flatbuffers # for TexturePacker giflib zlib libpng libjpeg lzo diff --git a/pkgs/applications/video/lightworks/default.nix b/pkgs/applications/video/lightworks/default.nix index da413915e37..97e5e67aaec 100644 --- a/pkgs/applications/video/lightworks/default.nix +++ b/pkgs/applications/video/lightworks/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, dpkg, makeWrapper, buildFHSUserEnv -, gtk3, gdk-pixbuf, cairo, libjpeg_original, glib, gnome2, libGLU +, gtk3, gdk-pixbuf, cairo, libjpeg_original, glib, pango, libGLU , nvidia_cg_toolkit, zlib, openssl, portaudio }: let @@ -10,7 +10,7 @@ let cairo libjpeg_original glib - gnome2.pango + pango libGLU nvidia_cg_toolkit zlib diff --git a/pkgs/applications/video/mjpg-streamer/default.nix b/pkgs/applications/video/mjpg-streamer/default.nix index d1efae4a924..b6856f1a18e 100644 --- a/pkgs/applications/video/mjpg-streamer/default.nix +++ b/pkgs/applications/video/mjpg-streamer/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation { meta = with stdenv.lib; { homepage = "https://github.com/jacksonliam/mjpg-streamer"; - description = "MJPG-streamer takes JPGs from Linux-UVC compatible webcams, filesystem or other input plugins and streams them as M-JPEG via HTTP to webbrowsers, VLC and other software"; + description = "Takes JPGs from Linux-UVC compatible webcams, filesystem or other input plugins and streams them as M-JPEG via HTTP to webbrowsers, VLC and other software"; platforms = platforms.linux; license = licenses.gpl2; maintainers = with maintainers; [ gebner ]; diff --git a/pkgs/applications/video/mkclean/default.nix b/pkgs/applications/video/mkclean/default.nix index 4a3cbc81b35..36cd2206070 100644 --- a/pkgs/applications/video/mkclean/default.nix +++ b/pkgs/applications/video/mkclean/default.nix @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "mkclean is a command line tool to clean and optimize Matroska (.mkv / .mka / .mks / .mk3d) and WebM (.webm / .weba) files that have already been muxed."; + description = "Command line tool to clean and optimize Matroska (.mkv / .mka / .mks / .mk3d) and WebM (.webm / .weba) files that have already been muxed"; homepage = "https://www.matroska.org"; license = licenses.bsdOriginal; maintainers = with maintainers; [ chrisaw ]; diff --git a/pkgs/applications/video/mkvtoolnix/default.nix b/pkgs/applications/video/mkvtoolnix/default.nix index fa68c58f5af..77bacea2a23 100644 --- a/pkgs/applications/video/mkvtoolnix/default.nix +++ b/pkgs/applications/video/mkvtoolnix/default.nix @@ -13,13 +13,13 @@ with stdenv.lib; stdenv.mkDerivation rec { pname = "mkvtoolnix"; - version = "50.0.0"; + version = "51.0.0"; src = fetchFromGitLab { owner = "mbunkus"; repo = "mkvtoolnix"; rev = "release-${version}"; - sha256 = "001i206lwxjyrp406svv4zpb1pliac3f4k5zhzgkjbk2dzj85pyd"; + sha256 = "06k2slgac0fhgypmdriwdc5s09mry22vxk316ixfj5sv3irwn7wc"; }; nativeBuildInputs = [ diff --git a/pkgs/applications/video/obs-studio/default.nix b/pkgs/applications/video/obs-studio/default.nix index c8d70c72fba..0d0fce279bb 100644 --- a/pkgs/applications/video/obs-studio/default.nix +++ b/pkgs/applications/video/obs-studio/default.nix @@ -39,13 +39,13 @@ let in mkDerivation rec { pname = "obs-studio"; - version = "26.0.0"; + version = "26.0.2"; src = fetchFromGitHub { owner = "obsproject"; repo = "obs-studio"; rev = version; - sha256 = "09y57b3c88szl3wyx3cxq8jrm3pfnyg2n25hxl1ynkq3rgaavdq2"; + sha256 = "1d502f80whh686mvq0yn6zpa5nvmnlzxwp5sjz43vpbbvhpbrdqj"; }; nativeBuildInputs = [ addOpenGLRunpath cmake pkgconfig ]; diff --git a/pkgs/applications/video/obs-studio/obs-ndi.nix b/pkgs/applications/video/obs-studio/obs-ndi.nix index f22ddd39ee4..a250a365ac6 100644 --- a/pkgs/applications/video/obs-studio/obs-ndi.nix +++ b/pkgs/applications/video/obs-studio/obs-ndi.nix @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { pname = "obs-ndi"; - version = "4.7.1"; + version = "4.9.1"; nativeBuildInputs = [ cmake ]; buildInputs = [ obs-studio qtbase ndi ]; @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { owner = "Palakis"; repo = "obs-ndi"; rev = version; - sha256 = "040fkbf3f3qgqcrd3072y3zrjb4fwga8zr10jym744xd7bgyylqh"; + sha256 = "1y3xdqp55jayhg4sinwiwpk194zc4f4jf0abz647x2fprsk9jz7s"; }; patches = [ ./fix-search-path.patch ./hardcode-ndi-path.patch ]; @@ -34,7 +34,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Network A/V plugin for OBS Studio"; homepage = "https://github.com/Palakis/obs-ndi"; - maintainers = with maintainers; [ peti ]; + maintainers = with maintainers; [ peti jshcmpbll ]; license = licenses.gpl2; platforms = with platforms; linux; }; diff --git a/pkgs/applications/video/obs-studio/wlrobs.nix b/pkgs/applications/video/obs-studio/wlrobs.nix index 99486a9ccc0..14bc80dd388 100644 --- a/pkgs/applications/video/obs-studio/wlrobs.nix +++ b/pkgs/applications/video/obs-studio/wlrobs.nix @@ -7,7 +7,7 @@ # ln -s ~/.nix-profile/share/obs/obs-plugins/wlrobs/bin/64bit/libwlrobs.so ~/.config/obs-studio/plugins/wlrobs/bin/64bit { stdenv, fetchhg, wayland, obs-studio , meson, ninja, pkgconfig, libX11 -, dmabufSupport ? false, libdrm ? null, libGL ? null}: +, dmabufSupport ? false, libdrm ? null, libGL ? null, lib}: assert dmabufSupport -> libdrm != null && libGL != null; @@ -29,7 +29,7 @@ stdenv.mkDerivation { ''; mesonFlags = [ - "-Duse_dmabuf=${if dmabufSupport then "true" else "false"}" + "-Duse_dmabuf=${lib.boolToString dmabufSupport}" ]; meta = with stdenv.lib; { diff --git a/pkgs/applications/video/pitivi/default.nix b/pkgs/applications/video/pitivi/default.nix index b1c1dd285e2..ee07a5c7cc8 100644 --- a/pkgs/applications/video/pitivi/default.nix +++ b/pkgs/applications/video/pitivi/default.nix @@ -147,6 +147,12 @@ in python3Packages.buildPythonApplication rec { mv data/org.pitivi.Pitivi-mime.xml data/org.pitivi.Pitivi-mime.xml.in ''; + # Fixes error + # Couldn’t recognize the image file format for file ".../share/pitivi/pixmaps/asset-proxied.svg" + # at startup, see https://github.com/NixOS/nixpkgs/issues/56943 + # and https://github.com/NixOS/nixpkgs/issues/89691#issuecomment-714398705. + strictDeps = false; + passthru = { updateScript = gnome3.updateScript { packageName = "pitivi"; diff --git a/pkgs/applications/video/plex-mpv-shim/default.nix b/pkgs/applications/video/plex-mpv-shim/default.nix index 993bdd67b0d..16e6cd826ec 100644 --- a/pkgs/applications/video/plex-mpv-shim/default.nix +++ b/pkgs/applications/video/plex-mpv-shim/default.nix @@ -15,7 +15,7 @@ buildPythonApplication rec { meta = with stdenv.lib; { homepage = "https://github.com/iwalton3/plex-mpv-shim"; - description = "Allows casting of videos to MPV via the Plex mobile and web app."; + description = "Allows casting of videos to MPV via the Plex mobile and web app"; license = licenses.mit; }; } diff --git a/pkgs/applications/video/streamlink-twitch-gui/bin.nix b/pkgs/applications/video/streamlink-twitch-gui/bin.nix index 251f495b7e1..1c955a36f34 100644 --- a/pkgs/applications/video/streamlink-twitch-gui/bin.nix +++ b/pkgs/applications/video/streamlink-twitch-gui/bin.nix @@ -1,6 +1,6 @@ { autoPatchelfHook, fetchurl, lib, makeDesktopItem, makeWrapper, stdenv, wrapGAppsHook , at-spi2-core, atk, alsaLib, cairo, cups, dbus, expat, gcc-unwrapped -, gdk-pixbuf, glib, gnome2, gtk3-x11, libudev0-shim, libuuid, nss, nspr, xorg +, gdk-pixbuf, glib, pango, gtk3-x11, libudev0-shim, libuuid, nss, nspr, xorg , streamlink }: let @@ -40,7 +40,7 @@ stdenv.mkDerivation rec { gcc-unwrapped gdk-pixbuf glib - gnome2.pango + pango gtk3-x11 nss nspr diff --git a/pkgs/applications/video/webtorrent_desktop/default.nix b/pkgs/applications/video/webtorrent_desktop/default.nix index ef50dad86bc..961cb403f13 100644 --- a/pkgs/applications/video/webtorrent_desktop/default.nix +++ b/pkgs/applications/video/webtorrent_desktop/default.nix @@ -85,7 +85,7 @@ ''; meta = with stdenv.lib; { - description = "Streaming torrent app for Mac, Windows, and Linux."; + description = "Streaming torrent app for Mac, Windows, and Linux"; homepage = "https://webtorrent.io/desktop"; license = licenses.mit; maintainers = [ maintainers.flokli ]; diff --git a/pkgs/applications/video/xawtv/0001-Fix-build-for-glibc-2.32.patch b/pkgs/applications/video/xawtv/0001-Fix-build-for-glibc-2.32.patch new file mode 100644 index 00000000000..227559f1f91 --- /dev/null +++ b/pkgs/applications/video/xawtv/0001-Fix-build-for-glibc-2.32.patch @@ -0,0 +1,63 @@ +From 009c426ab37ef7f8d9d8e30f45096225203d694a Mon Sep 17 00:00:00 2001 +From: Maximilian Bosch +Date: Tue, 11 Aug 2020 11:27:21 +0200 +Subject: [PATCH] Fix build for glibc-2.32 + +The `sys_siglist`-array has been removed. Instead, `strsignal` should be +used. +--- + console/fbtools.c | 2 +- + console/record.c | 2 +- + x11/rootv.c | 4 ++-- + 3 files changed, 4 insertions(+), 4 deletions(-) + +diff --git a/console/fbtools.c b/console/fbtools.c +index 9f876df..07739ff 100644 +--- a/console/fbtools.c ++++ b/console/fbtools.c +@@ -520,6 +520,6 @@ fb_catch_exit_signals(void) + + /* cleanup */ + fb_cleanup(); +- fprintf(stderr,"Oops: %s\n",sys_siglist[termsig]); ++ fprintf(stderr,"Oops: %s\n",strsignal(termsig)); + exit(42); + } +diff --git a/console/record.c b/console/record.c +index 685221b..90f0c85 100644 +--- a/console/record.c ++++ b/console/record.c +@@ -429,7 +429,7 @@ ctrlc(int signal) + { + if (verbose) + fprintf(stderr,"\n%s - exiting\n", +- sys_siglist[signal]); ++ strsignal(signal)); + stop = 1; + } + +diff --git a/x11/rootv.c b/x11/rootv.c +index 60a8406..4bf458b 100644 +--- a/x11/rootv.c ++++ b/x11/rootv.c +@@ -133,7 +133,7 @@ catch_sig(int signal) + termsig = signal; + if (verbose) + fprintf(stderr,"received signal %d [%s]\n", +- termsig,sys_siglist[termsig]); ++ termsig,strsignal(termsig)); + } + + static void usage(FILE *fp) +@@ -422,7 +422,7 @@ main(int argc, char *argv[]) + } + if (verbose && termsig) + fprintf(stderr,"exiting on signal %d [%s]\n", +- termsig,sys_siglist[termsig]); ++ termsig,strsignal(termsig)); + if (do_mute && have_mute) + XvSetPortAttribute(dpy,port,XV_MUTE,1); + XvStopVideo(dpy,port,win); +-- +2.25.4 + diff --git a/pkgs/applications/video/xawtv/default.nix b/pkgs/applications/video/xawtv/default.nix index a82ea044407..ee2f811cb4a 100644 --- a/pkgs/applications/video/xawtv/default.nix +++ b/pkgs/applications/video/xawtv/default.nix @@ -26,6 +26,10 @@ stdenv.mkDerivation rec { sha256 = "055p0wia0xsj073l8mg4ifa6m81dmv6p45qyh99brramq5iylfy5"; }; + patches = [ + ./0001-Fix-build-for-glibc-2.32.patch + ]; + buildInputs = [ ncurses libjpeg diff --git a/pkgs/applications/virtualization/docker/default.nix b/pkgs/applications/virtualization/docker/default.nix index a1d48b0588a..4d6f53ceb5d 100644 --- a/pkgs/applications/virtualization/docker/default.nix +++ b/pkgs/applications/virtualization/docker/default.nix @@ -29,15 +29,20 @@ rec { patches = []; }); - docker-containerd = containerd.overrideAttrs (oldAttrs: { + docker-containerd = let + withlibseccomp = lib.versionAtLeast version "19.03"; + in containerd.overrideAttrs (oldAttrs: { name = "docker-containerd-${version}"; inherit version; src = fetchFromGitHub { - owner = "docker"; + owner = "containerd"; repo = "containerd"; rev = containerdRev; sha256 = containerdSha256; }; + # This should be removed once Docker uses containerd >=1.4 + nativeBuildInputs = oldAttrs.nativeBuildInputs ++ lib.optional withlibseccomp pkgconfig; + buildInputs = oldAttrs.buildInputs ++ lib.optional withlibseccomp libseccomp; }); docker-tini = tini.overrideAttrs (oldAttrs: { @@ -210,13 +215,14 @@ rec { }; docker_19_03 = makeOverridable dockerGen rec { - version = "19.03.12"; + version = "19.03.13"; rev = "v${version}"; - sha256 = "0i5xr8q3yjrz5zsjcq63v4g1mzqpingjr1hbf9amk14484i2wkw7"; + sha256 = "139qqy8jiz1phnngknpa7c1nk9iqwd3hcc9as8x50p1vnycwzr3f"; runcRev = "dc9208a3303feef5b3839f4323d9beb36df0a9dd"; # v1.0.0-rc10 runcSha256 = "0pi3rvj585997m4z9ljkxz2z9yxf9p2jr0pmqbqrc7bc95f5hagk"; - containerdRev = "7ad184331fa3e55e52b890ea95e65ba581ae3429"; # v1.2.13 - containerdSha256 = "1rac3iak3jpz57yarxc72bxgxvravwrl0j6s6w2nxrmh2m3kxqzn"; + # Note: Once all packaged Docker versions use containerd <=1.2 or >=1.4 remove the libseccomp and pkgconfig inputs above + containerdRev = "8fba4e9a7d01810a393d5d25a3621dc101981175"; # v1.3.7 + containerdSha256 = "10zy507ajslizicagb64dvbs7wmw0j4x3hdhygbdh4g2nv3mgjb7"; tiniRev = "fec3683b971d9c3ef73f284f176672c44b448662"; # v0.18.0 tiniSha256 = "1h20i3wwlbd8x4jr2gz68hgklh0lb0jj7y5xk1wvr8y58fip1rdn"; }; diff --git a/pkgs/applications/virtualization/open-vm-tools/default.nix b/pkgs/applications/virtualization/open-vm-tools/default.nix index df9a89293f2..033fe79368b 100644 --- a/pkgs/applications/virtualization/open-vm-tools/default.nix +++ b/pkgs/applications/virtualization/open-vm-tools/default.nix @@ -1,18 +1,18 @@ { stdenv, lib, fetchFromGitHub, makeWrapper, autoreconfHook, - fuse, libmspack, openssl, pam, xercesc, icu, libdnet, procps, + fuse, libmspack, openssl, pam, xercesc, icu, libdnet, procps, libtirpc, rpcsvc-proto, libX11, libXext, libXinerama, libXi, libXrender, libXrandr, libXtst, pkgconfig, glib, gdk-pixbuf-xlib, gtk3, gtkmm3, iproute, dbus, systemd, which, withX ? true }: stdenv.mkDerivation rec { pname = "open-vm-tools"; - version = "11.1.0"; + version = "11.1.5"; src = fetchFromGitHub { owner = "vmware"; repo = "open-vm-tools"; rev = "stable-${version}"; - sha256 = "1wyiz8j5b22ajrr1fh9cn55lsgd5g13q0i8wvk2a0yw0vaw1883s"; + sha256 = "0i8p28hd5wgiay4lgmd9fid5ickwygy6w3xpfzzy8v9z04xc5bg7"; }; sourceRoot = "${src.name}/open-vm-tools"; @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { outputs = [ "out" "dev" ]; nativeBuildInputs = [ autoreconfHook makeWrapper pkgconfig ]; - buildInputs = [ fuse glib icu libdnet libmspack openssl pam procps xercesc ] + buildInputs = [ fuse glib icu libdnet libmspack libtirpc openssl pam procps rpcsvc-proto xercesc ] ++ lib.optionals withX [ gdk-pixbuf-xlib gtk3 gtkmm3 libX11 libXext libXinerama libXi libXrender libXrandr libXtst ]; patches = [ diff --git a/pkgs/applications/virtualization/qemu/default.nix b/pkgs/applications/virtualization/qemu/default.nix index 535f8371153..3c867205799 100644 --- a/pkgs/applications/virtualization/qemu/default.nix +++ b/pkgs/applications/virtualization/qemu/default.nix @@ -1,17 +1,19 @@ { stdenv, fetchurl, fetchpatch, python, zlib, pkgconfig, glib -, ncurses, perl, pixman, vde2, alsaLib, texinfo, flex +, perl, pixman, vde2, alsaLib, texinfo, flex , bison, lzo, snappy, libaio, gnutls, nettle, curl , makeWrapper , attr, libcap, libcap_ng , CoreServices, Cocoa, Hypervisor, rez, setfile , numaSupport ? stdenv.isLinux && !stdenv.isAarch32, numactl , seccompSupport ? stdenv.isLinux, libseccomp -, pulseSupport ? !stdenv.isDarwin, libpulseaudio -, sdlSupport ? !stdenv.isDarwin, SDL2 -, gtkSupport ? !stdenv.isDarwin && !xenSupport, gtk3, gettext, vte, wrapGAppsHook -, vncSupport ? true, libjpeg, libpng -, smartcardSupport ? true, libcacard -, spiceSupport ? !stdenv.isDarwin, spice, spice-protocol +, alsaSupport ? stdenv.lib.hasSuffix "linux" stdenv.hostPlatform.system && !nixosTestRunner +, pulseSupport ? !stdenv.isDarwin && !nixosTestRunner, libpulseaudio +, sdlSupport ? !stdenv.isDarwin && !nixosTestRunner, SDL2 +, gtkSupport ? !stdenv.isDarwin && !xenSupport && !nixosTestRunner, gtk3, gettext, vte, wrapGAppsHook +, vncSupport ? !nixosTestRunner, libjpeg, libpng +, smartcardSupport ? !nixosTestRunner, libcacard +, spiceSupport ? !stdenv.isDarwin && !nixosTestRunner, spice, spice-protocol +, ncursesSupport ? !nixosTestRunner, ncurses , usbredirSupport ? spiceSupport, usbredir , xenSupport ? false, xen , cephSupport ? false, ceph @@ -29,7 +31,7 @@ with stdenv.lib; let - audio = optionalString (hasSuffix "linux" stdenv.hostPlatform.system) "alsa," + audio = optionalString alsaSupport "alsa," + optionalString pulseSupport "pa," + optionalString sdlSupport "sdl,"; @@ -50,10 +52,11 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ python python.pkgs.sphinx pkgconfig flex bison ] ++ optionals gtkSupport [ wrapGAppsHook ]; buildInputs = - [ zlib glib ncurses perl pixman + [ zlib glib perl pixman vde2 texinfo makeWrapper lzo snappy gnutls nettle curl ] + ++ optionals ncursesSupport [ ncurses ] ++ optionals stdenv.isDarwin [ CoreServices Cocoa Hypervisor rez setfile ] ++ optionals seccompSupport [ libseccomp ] ++ optionals numaSupport [ numactl ] diff --git a/pkgs/applications/virtualization/seabios/default.nix b/pkgs/applications/virtualization/seabios/default.nix index d95f759783d..cd03759045a 100644 --- a/pkgs/applications/virtualization/seabios/default.nix +++ b/pkgs/applications/virtualization/seabios/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { pname = "seabios"; - version = "1.13.0"; + version = "1.14.0"; src = fetchurl { url = "https://www.seabios.org/downloads/${pname}-${version}.tar.gz"; - sha256 = "00z7vdahpxa37irlf8ld350dp6z9qfyfb56vbfqr319hsv13srrp"; + sha256 = "1zc1brgafbbf5hmdr1qc1p859cabpz73l8sklq83xa4sn9icqw7b"; }; buildInputs = [ iasl python ]; diff --git a/pkgs/applications/virtualization/virt-manager/default.nix b/pkgs/applications/virtualization/virt-manager/default.nix index 952a30b139c..9673e93d0cc 100644 --- a/pkgs/applications/virtualization/virt-manager/default.nix +++ b/pkgs/applications/virtualization/virt-manager/default.nix @@ -2,7 +2,7 @@ , wrapGAppsHook, gtk-vnc, vte, avahi, dconf , gobject-introspection, libvirt-glib, system-libvirt , gsettings-desktop-schemas, glib, libosinfo, gnome3 -, gtksourceview4 +, gtksourceview4, docutils , spiceSupport ? true, spice-gtk ? null , cpio, e2fsprogs, findutils, gzip }: @@ -11,16 +11,17 @@ with stdenv.lib; python3Packages.buildPythonApplication rec { pname = "virt-manager"; - version = "2.2.1"; + version = "3.1.0"; src = fetchurl { url = "http://virt-manager.org/download/sources/virt-manager/${pname}-${version}.tar.gz"; - sha256 = "06ws0agxlip6p6n3n43knsnjyd91gqhh2dadgc33wl9lx1k8vn6g"; + sha256 = "0al34lxlywqnj98hdm72a38zk8ns91wkqgrc3h1mhv1kikd8pjfc"; }; nativeBuildInputs = [ intltool file gobject-introspection # for setup hook populating GI_TYPELIB_PATH + docutils ]; buildInputs = [ diff --git a/pkgs/applications/virtualization/virtualbox/default.nix b/pkgs/applications/virtualization/virtualbox/default.nix index c320eca0bbe..e80edf72677 100644 --- a/pkgs/applications/virtualization/virtualbox/default.nix +++ b/pkgs/applications/virtualization/virtualbox/default.nix @@ -23,8 +23,7 @@ let buildType = "release"; # Use maintainers/scripts/update.nix to update the version and all related hashes or # change the hashes in extpack.nix and guest-additions/default.nix as well manually. - version = "6.1.14"; - tarballVersion = "${version}a"; + version = "6.1.16"; iasl' = iasl.overrideAttrs (old: rec { inherit (old) pname; @@ -40,8 +39,8 @@ in stdenv.mkDerivation { inherit version; src = fetchurl { - url = "https://download.virtualbox.org/virtualbox/${version}/VirtualBox-${tarballVersion}.tar.bz2"; - sha256 = "16f3cb83ab3c4dacf2a9d3cc638cbd18db23767828bba6b8ba1c1b57abeb6aef"; + url = "https://download.virtualbox.org/virtualbox/${version}/VirtualBox-${version}.tar.bz2"; + sha256 = "49c1990da16d8a3d5bda8cdb961ec8195a901e67e4c79aea44c1521a5fc2f9f1"; }; outputs = [ "out" "modsrc" ]; diff --git a/pkgs/applications/virtualization/virtualbox/extpack.nix b/pkgs/applications/virtualization/virtualbox/extpack.nix index 03b3be7e96e..302f2b5945a 100644 --- a/pkgs/applications/virtualization/virtualbox/extpack.nix +++ b/pkgs/applications/virtualization/virtualbox/extpack.nix @@ -12,7 +12,7 @@ fetchurl rec { # Manually sha256sum the extensionPack file, must be hex! # Thus do not use `nix-prefetch-url` but instead plain old `sha256sum`. # Checksums can also be found at https://www.virtualbox.org/download/hashes/${version}/SHA256SUMS - let value = "b224e796e886b19bce69f0aaedf6ca82bad0ca29c61fb0ed86166efb84356942"; + let value = "9802482b77b95a954cb5111793da10d009009a4e9a9c4eaa4bd1ae5dafe9db46"; in assert (builtins.stringLength value) == 64; value; meta = { diff --git a/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix b/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix index 3937d70e869..180970d51da 100644 --- a/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix +++ b/pkgs/applications/virtualization/virtualbox/guest-additions/default.nix @@ -27,7 +27,7 @@ in stdenv.mkDerivation rec { src = fetchurl { url = "http://download.virtualbox.org/virtualbox/${version}/VBoxGuestAdditions_${version}.iso"; - sha256 = "dd9f176abb89043c01cea7ec7e20130e76db71bd83beafeb2dc5858d4c9c86cd"; + sha256 = "88db771a5efd7c048228e5c1e0b8fba56542e9d8c1b75f7af5b0c4cf334f0584"; }; KERN_DIR = "${kernel.dev}/lib/modules/${kernel.modDirVersion}/build"; diff --git a/pkgs/applications/window-managers/i3/layout-manager.nix b/pkgs/applications/window-managers/i3/layout-manager.nix index f4c2a53b7a2..c91b1d31b95 100644 --- a/pkgs/applications/window-managers/i3/layout-manager.nix +++ b/pkgs/applications/window-managers/i3/layout-manager.nix @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://github.com/klaxalk/i3-layout-manager"; - description = "Saving, loading and managing layouts for i3wm."; + description = "Saving, loading and managing layouts for i3wm"; license = licenses.mit; platforms = platforms.linux; maintainers = with maintainers; [ ]; diff --git a/pkgs/applications/window-managers/i3/lock-fancy.nix b/pkgs/applications/window-managers/i3/lock-fancy.nix index 9b9b2dea132..c71ed04e48d 100644 --- a/pkgs/applications/window-managers/i3/lock-fancy.nix +++ b/pkgs/applications/window-managers/i3/lock-fancy.nix @@ -32,7 +32,7 @@ stdenv.mkDerivation rec { cp icons/lock*.png $out/share/i3lock-fancy/icons ''; meta = with stdenv.lib; { - description = "i3lock is a bash script that takes a screenshot of the desktop, blurs the background and adds a lock icon and text."; + description = "i3lock is a bash script that takes a screenshot of the desktop, blurs the background and adds a lock icon and text"; homepage = "https://github.com/meskarune/i3lock-fancy"; maintainers = with maintainers; [ ]; license = licenses.mit; diff --git a/pkgs/applications/window-managers/i3/wmfocus.nix b/pkgs/applications/window-managers/i3/wmfocus.nix index c4e22546d1c..5c9f2b77953 100644 --- a/pkgs/applications/window-managers/i3/wmfocus.nix +++ b/pkgs/applications/window-managers/i3/wmfocus.nix @@ -3,16 +3,16 @@ rustPlatform.buildRustPackage rec { pname = "wmfocus"; - version = "1.1.3"; + version = "1.1.5"; src = fetchFromGitHub { owner = "svenstaro"; repo = pname; - rev = version; - sha256 = "17qdsqp9072yr7rcm6g1h620rff95ldawr8ldpkbjmkh0rc86skn"; + rev = "v${version}"; + sha256 = "09xffklpz62h6yiksxdlv3a9s1z0wr3ax9syl399avwdmq3c0y49"; }; - cargoSha256 = "1nsdvzrsgprwq7lsvfpymqslhggdzfk3840y8x92qjb0l2g4jhw1"; + cargoSha256 = "0rczas6sgcppacz48xx7sarkvc4s2sgcdz6c661d7vcry1y46xms"; nativeBuildInputs = [ python3 pkgconfig ]; buildInputs = [ cairo libxkbcommon xorg.xcbutilkeysyms ]; diff --git a/pkgs/applications/window-managers/leftwm/default.nix b/pkgs/applications/window-managers/leftwm/default.nix index 06ebd7e0e92..e2b3e4a55a4 100644 --- a/pkgs/applications/window-managers/leftwm/default.nix +++ b/pkgs/applications/window-managers/leftwm/default.nix @@ -26,7 +26,7 @@ rustPlatform.buildRustPackage rec { ''; meta = with stdenv.lib; { - description = "Leftwm - A tiling window manager for the adventurer"; + description = "A tiling window manager for the adventurer"; homepage = "https://github.com/leftwm/leftwm"; license = licenses.mit; platforms = platforms.linux; diff --git a/pkgs/applications/window-managers/qtile/default.nix b/pkgs/applications/window-managers/qtile/default.nix index eccf5c163a8..280ec067658 100644 --- a/pkgs/applications/window-managers/qtile/default.nix +++ b/pkgs/applications/window-managers/qtile/default.nix @@ -34,7 +34,18 @@ python37Packages.buildPythonApplication rec { nativeBuildInputs = [ pkgconfig ]; buildInputs = [ glib libxcb cairo pango python37Packages.xcffib ]; - pythonPath = with python37Packages; [ xcffib cairocffi-xcffib setuptools setuptools_scm ]; + pythonPath = with python37Packages; [ + xcffib + cairocffi-xcffib + setuptools + setuptools_scm + dateutil + dbus-python + mpd2 + psutil + pyxdg + pygobject3 + ]; postInstall = '' wrapProgram $out/bin/qtile \ diff --git a/pkgs/build-support/build-bazel-package/default.nix b/pkgs/build-support/build-bazel-package/default.nix index 4d22a329e41..10a331bcc9e 100644 --- a/pkgs/build-support/build-bazel-package/default.nix +++ b/pkgs/build-support/build-bazel-package/default.nix @@ -9,7 +9,7 @@ let in args@{ - name + name ? "${args.pname}-${args.version}" , bazel ? bazelPkg , bazelFlags ? [] , bazelBuildFlags ? [] diff --git a/pkgs/build-support/libredirect/libredirect.c b/pkgs/build-support/libredirect/libredirect.c index e7f74c736ab..c8d6956a6bf 100644 --- a/pkgs/build-support/libredirect/libredirect.c +++ b/pkgs/build-support/libredirect/libredirect.c @@ -121,6 +121,13 @@ FILE * fopen(const char * path, const char * mode) return fopen_real(rewrite(path, buf), mode); } +FILE * __nss_files_fopen(const char * path) +{ + FILE * (*__nss_files_fopen_real) (const char *) = dlsym(RTLD_NEXT, "__nss_files_fopen"); + char buf[PATH_MAX]; + return __nss_files_fopen_real(rewrite(path, buf)); +} + FILE * fopen64(const char * path, const char * mode) { FILE * (*fopen64_real) (const char *, const char *) = dlsym(RTLD_NEXT, "fopen64"); diff --git a/pkgs/build-support/make-desktopitem/default.nix b/pkgs/build-support/make-desktopitem/default.nix index 8355a5ad29b..8e51dc1b848 100644 --- a/pkgs/build-support/make-desktopitem/default.nix +++ b/pkgs/build-support/make-desktopitem/default.nix @@ -1,50 +1,60 @@ { lib, runCommandLocal, desktop-file-utils }: -{ name +# See https://specifications.freedesktop.org/desktop-entry-spec/desktop-entry-spec-latest.html +{ name # The name of the desktop file , type ? "Application" , exec , icon ? null , comment ? null -, terminal ? "false" -, desktopName +, terminal ? false +, desktopName # The name of the application , genericName ? null , mimeType ? null , categories ? null , startupNotify ? null -, extraEntries ? null +, extraDesktopEntries ? {} # Extra key-value pairs to add to the [Desktop Entry] section. This may override other values +, extraEntries ? "" # Extra configuration. Will be appended to the end of the file and may thus contain extra sections , fileValidation ? true # whether to validate resulting desktop file. }: let - optionalEntriesList = [{k="Icon"; v=icon;} - {k="Comment"; v=comment;} - {k="GenericName"; v=genericName;} - {k="MimeType"; v=mimeType;} - {k="Categories"; v=categories;} - {k="StartupNotify"; v=startupNotify;}]; + # like builtins.toString, but null -> null instead of null -> "" + nullableToString = value: if value == null then null + else if builtins.isBool value then lib.boolToString value + else builtins.toString value; - valueNotNull = {k, v}: v != null; - entriesToKeep = builtins.filter valueNotNull optionalEntriesList; + # The [Desktop entry] section of the desktop file, as attribute set. + mainSection = { + "Type" = toString type; + "Exec" = nullableToString exec; + "Icon" = nullableToString icon; + "Comment" = nullableToString comment; + "Terminal" = nullableToString terminal; + "Name" = toString desktopName; + "GenericName" = nullableToString genericName; + "MimeType" = nullableToString mimeType; + "Categories" = nullableToString categories; + "StartupNotify" = nullableToString startupNotify; + } // extraDesktopEntries; - mkEntry = {k, v}: k + "=" + v; - optionalEntriesString = lib.concatMapStringsSep "\n" mkEntry entriesToKeep; + # Map all entries to a list of lines + desktopFileStrings = + ["[Desktop Entry]"] + ++ builtins.filter + (v: v != null) + (lib.mapAttrsToList + (name: value: if value != null then "${name}=${value}" else null) + mainSection + ) + ++ (if extraEntries == "" then [] else ["${extraEntries}"]); in runCommandLocal "${name}.desktop" {} - '' + ('' mkdir -p "$out/share/applications" cat > "$out/share/applications/${name}.desktop" < $out - ${pkgs.gixy}/bin/gixy $out + awk -f ${awkFormatNginx} "$textPath" | sed '/^\s*$/d' > $out + gixy $out ''; # writePerl takes a name an attributeset with libraries and some perl sourcecode and diff --git a/pkgs/data/fonts/cozette/default.nix b/pkgs/data/fonts/cozette/default.nix index a5bc752c4ca..3550facfc11 100644 --- a/pkgs/data/fonts/cozette/default.nix +++ b/pkgs/data/fonts/cozette/default.nix @@ -19,7 +19,7 @@ fetchzip rec { ''; meta = with lib; { - description = "A bitmap programming font optimized for coziness."; + description = "A bitmap programming font optimized for coziness"; homepage = "https://github.com/slavfox/cozette"; license = licenses.mit; platforms = platforms.all; diff --git a/pkgs/data/fonts/eunomia/default.nix b/pkgs/data/fonts/eunomia/default.nix index e68f528ff38..272649582c3 100644 --- a/pkgs/data/fonts/eunomia/default.nix +++ b/pkgs/data/fonts/eunomia/default.nix @@ -19,7 +19,7 @@ fetchzip { meta = with lib; { homepage = "http://dotcolon.net/font/eunomia/"; - description = "A futuristic decorative font."; + description = "A futuristic decorative font"; platforms = platforms.all; maintainers = with maintainers; [ leenaars ]; license = licenses.ofl; diff --git a/pkgs/data/fonts/f5_6/default.nix b/pkgs/data/fonts/f5_6/default.nix index 175648198ce..112111faa3d 100644 --- a/pkgs/data/fonts/f5_6/default.nix +++ b/pkgs/data/fonts/f5_6/default.nix @@ -19,7 +19,7 @@ fetchzip { meta = with lib; { homepage = "http://dotcolon.net/font/${pname}/"; - description = "A weighted decorative font."; + description = "A weighted decorative font"; platforms = platforms.all; maintainers = with maintainers; [ leenaars ]; license = licenses.ofl; diff --git a/pkgs/data/fonts/ferrum/default.nix b/pkgs/data/fonts/ferrum/default.nix index fe40252ab23..3f122d22daf 100644 --- a/pkgs/data/fonts/ferrum/default.nix +++ b/pkgs/data/fonts/ferrum/default.nix @@ -19,7 +19,7 @@ fetchzip { meta = with lib; { homepage = "http://dotcolon.net/font/${pname}/"; - description = "A decorative font."; + description = "A decorative font"; platforms = platforms.all; maintainers = with maintainers; [ leenaars ]; license = licenses.cc0; diff --git a/pkgs/data/fonts/fixedsys-excelsior/default.nix b/pkgs/data/fonts/fixedsys-excelsior/default.nix index c8d2d1c2a9e..4222b802d55 100644 --- a/pkgs/data/fonts/fixedsys-excelsior/default.nix +++ b/pkgs/data/fonts/fixedsys-excelsior/default.nix @@ -21,7 +21,7 @@ in fetchurl rec { sha256 = "32d6f07f1ff08c764357f8478892b2ba5ade23427af99759f34a0ba24bcd2e37"; meta = { - description = "Pan-unicode version of Fixedsys, a classic DOS font."; + description = "Pan-unicode version of Fixedsys, a classic DOS font"; homepage = "http://www.fixedsysexcelsior.com/"; platforms = stdenv.lib.platforms.all; license = stdenv.lib.licenses.publicDomain; diff --git a/pkgs/data/fonts/jetbrains-mono/default.nix b/pkgs/data/fonts/jetbrains-mono/default.nix index b198486327d..e3ac0a1f320 100644 --- a/pkgs/data/fonts/jetbrains-mono/default.nix +++ b/pkgs/data/fonts/jetbrains-mono/default.nix @@ -1,20 +1,18 @@ { lib, fetchzip }: let - version = "2.002"; + version = "2.200"; in fetchzip { name = "JetBrainsMono-${version}"; url = "https://github.com/JetBrains/JetBrainsMono/releases/download/v${version}/JetBrainsMono-${version}.zip"; - sha256 = "018lhxi9m8aprls6cnpndzdg5snijwzm22m2pxxi6zcqxrcxh8vb"; + sha256 = "16v914ph9sgdz3w56yz9f26zpj2lpxjb6ppnphxlmbllh68z1fh4"; postFetch = '' mkdir -p $out/share/fonts unzip -j $downloadedFile \*.ttf -d $out/share/fonts/truetype - unzip -j $downloadedFile \*.eot -d $out/share/fonts/eot - unzip -j $downloadedFile \*.woff -d $out/share/fonts/woff unzip -j $downloadedFile \*.woff2 -d $out/share/fonts/woff2 ''; diff --git a/pkgs/data/fonts/joypixels/default.nix b/pkgs/data/fonts/joypixels/default.nix index 1b107f9cb82..c19a55400fc 100644 --- a/pkgs/data/fonts/joypixels/default.nix +++ b/pkgs/data/fonts/joypixels/default.nix @@ -1,24 +1,103 @@ -{ stdenv, fetchurl }: +{ stdenv +, fetchurl +, config +, acceptLicense ? config.joypixels.acceptLicense or false +}: + +let + inherit (stdenv.hostPlatform.parsed) kernel; + + systemSpecific = { + darwin = rec { + systemTag = "nix-darwin"; + capitalized = systemTag; + fontFile = "JoyPixels-SBIX.ttf"; + }; + }.${kernel.name} or rec { + systemTag = "nixos"; + capitalized = "NixOS"; + fontFile = "joypixels-android.ttf"; + }; + + joypixels-free-license = with systemSpecific; { + spdxId = "LicenseRef-JoyPixels-Free-6.0"; + fullName = "JoyPixels Free License Agreement 6.0"; + url = "https://cdn.joypixels.com/distributions/${systemTag}/license/free-license.pdf"; + free = false; + }; + + joypixels-license-appendix = with systemSpecific; { + spdxId = "LicenseRef-JoyPixels-NixOS-Appendix"; + fullName = "JoyPixels ${capitalized} License Appendix"; + url = "https://cdn.joypixels.com/distributions/${systemTag}/appendix/joypixels-license-appendix.pdf"; + free = false; + }; + + throwLicense = throw '' + Use of the JoyPixels font requires acceptance of the license. + - ${joypixels-free-license.fullName} [1] + - ${joypixels-license-appendix.fullName} [2] + + You can express acceptance by setting acceptLicense to true in your + configuration. Note that this is not a free license so it requires allowing + unfree licenses. + + configuration.nix: + nixpkgs.config.allowUnfree = true; + nixpkgs.config.joypixels.acceptLicense = true; + + config.nix: + allowUnfree = true; + joypixels.acceptLicense = true; + + [1]: ${joypixels-free-license.url} + [2]: ${joypixels-license-appendix.url} + ''; + +in stdenv.mkDerivation rec { pname = "joypixels"; version = "6.0.0"; - src = fetchurl { - url = "https://cdn.joypixels.com/arch-linux/font/${version}/joypixels-android.ttf"; - sha256 = "1vxqsqs93g4jyp01r47lrpcm0fmib2n1vysx32ksmfxmprimb75s"; - }; + src = assert !acceptLicense -> throwLicense; + with systemSpecific; fetchurl { + name = fontFile; + url = "https://cdn.joypixels.com/distributions/${systemTag}/font/${version}/${fontFile}"; + sha256 = { + darwin = "1s1dibgpv4lc9cwbgykgwjxxhg2rbn5g9fyd10r6apj9xhfn8cyn"; + }.${kernel.name} or "1vxqsqs93g4jyp01r47lrpcm0fmib2n1vysx32ksmfxmprimb75s"; + }; dontUnpack = true; - installPhase = '' - install -Dm644 $src $out/share/fonts/truetype/joypixels.ttf + installPhase = with systemSpecific; '' + runHook preInstall + + install -Dm644 $src $out/share/fonts/truetype/${fontFile} + + runHook postInstall ''; meta = with stdenv.lib; { - description = "Emoji as a Service (formerly EmojiOne)"; - homepage = "https://www.joypixels.com/"; - license = licenses.unfree; - maintainers = with maintainers; [ jtojnar ]; + description = "The finest emoji you can use legally (formerly EmojiOne)"; + longDescription = '' + New for 2020! JoyPixels 6.0 includes 3,342 originally crafted icon + designs and is 100% Unicode 13 compatible. We offer the largest selection + of files ranging from png, svg, iconjar, sprites, and fonts. + ''; + homepage = "https://www.joypixels.com/fonts"; + license = + let + free-license = joypixels-free-license; + appendix = joypixels-license-appendix; + in with systemSpecific; { + spdxId = "LicenseRef-JoyPixels-Free-6.0-with-${capitalized}-Appendix"; + fullName = "${free-license.fullName} with ${appendix.fullName}"; + url = free-license.url; + appendixUrl = appendix.url; + free = false; + }; + maintainers = with maintainers; [ toonn jtojnar ]; }; } diff --git a/pkgs/data/fonts/julia-mono/default.nix b/pkgs/data/fonts/julia-mono/default.nix index c6bcdfd3b2a..8774913c83c 100644 --- a/pkgs/data/fonts/julia-mono/default.nix +++ b/pkgs/data/fonts/julia-mono/default.nix @@ -1,14 +1,14 @@ { lib, fetchzip }: let - version = "0.018"; + version = "0.022"; in fetchzip { name = "JuliaMono-${version}"; url = "https://github.com/cormullion/juliamono/releases/download/v${version}/JuliaMono.zip"; - sha256 = "0ss79a9gymbhih5pgjkg1mipmk0qsvqqwlkqcdm9fz87d7kfhby3"; + sha256 = "sha256-/MVT6n842sSiuPZNYxN3q1vn6yvMvmcTEDyvAd2GikA="; postFetch = '' - mkdir -p $out/share/fonts + mkdir -p $out/share/fonts/truetype unzip -j $downloadedFile \*.ttf -d $out/share/fonts/truetype ''; diff --git a/pkgs/data/fonts/lmmath/default.nix b/pkgs/data/fonts/lmmath/default.nix index a66bd48c897..0530141317b 100644 --- a/pkgs/data/fonts/lmmath/default.nix +++ b/pkgs/data/fonts/lmmath/default.nix @@ -15,7 +15,7 @@ in fetchzip rec { sha256 = "05k145bxgxjh7i9gx1ahigxfpc2v2vwzsy2mc41jvvg51kjr8fnn"; meta = with lib; { - description = "The Latin Modern Math (LM Math) font completes the modernization of the Computer Modern family of typefaces designed and programmed by Donald E. Knuth."; + description = "The Latin Modern Math (LM Math) font completes the modernization of the Computer Modern family of typefaces designed and programmed by Donald E. Knuth"; homepage = "http://www.gust.org.pl/projects/e-foundry/lm-math"; # "The Latin Modern Math font is licensed under the GUST Font License (GFL), # which is a free license, legally equivalent to the LaTeX Project Public diff --git a/pkgs/data/fonts/merriweather/default.nix b/pkgs/data/fonts/merriweather/default.nix index 1768c44bc03..d1b3359df26 100644 --- a/pkgs/data/fonts/merriweather/default.nix +++ b/pkgs/data/fonts/merriweather/default.nix @@ -27,7 +27,7 @@ stdenvNoCC.mkDerivation rec { meta = with lib; { homepage = "https://github.com/SorkinType/Merriweather"; - description = "Merriweather was designed to be a text face that is pleasant to read on screens"; + description = "A text face designed to be pleasant to read on screens"; license = licenses.ofl; platforms = platforms.all; maintainers = with maintainers; [ emily ]; diff --git a/pkgs/data/fonts/open-sans/default.nix b/pkgs/data/fonts/open-sans/default.nix index e92f7580252..ecca50537f1 100644 --- a/pkgs/data/fonts/open-sans/default.nix +++ b/pkgs/data/fonts/open-sans/default.nix @@ -9,7 +9,7 @@ in fetchFromGitLab { domain = "salsa.debian.org"; owner = "fonts-team"; repo = "fonts-open-sans"; - rev = "debian%2F1.11-1"; # URL-encoded form of "debian/1.11-1" tag + rev = "debian/1.11-1"; postFetch = '' tar xf $downloadedFile --strip=1 mkdir -p $out/share/fonts/truetype diff --git a/pkgs/data/fonts/vegur/default.nix b/pkgs/data/fonts/vegur/default.nix index af6c00e32c8..2f03dac3914 100644 --- a/pkgs/data/fonts/vegur/default.nix +++ b/pkgs/data/fonts/vegur/default.nix @@ -18,7 +18,7 @@ in fetchzip { meta = with lib; { homepage = "http://dotcolon.net/font/vegur/"; - description = "A humanist sans serif font."; + description = "A humanist sans serif font"; platforms = platforms.all; maintainers = [ maintainers.samueldr ]; license = licenses.cc0; diff --git a/pkgs/data/icons/luna-icons/default.nix b/pkgs/data/icons/luna-icons/default.nix index 3125df5fe1c..2cbf1c50632 100644 --- a/pkgs/data/icons/luna-icons/default.nix +++ b/pkgs/data/icons/luna-icons/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "luna-icons"; - version = "2020-08-09"; + version = "0.6"; src = fetchFromGitHub { owner = "darkomarko42"; repo = pname; - rev = "d32aacabcc018212c460833327e1b54a716a5a23"; - sha256 = "1f1ypxcvmd97afn7612i8gxmbrj80vx45vqrrh3n0p65jw5lg7zc"; + rev = version; + sha256 = "1lm7ws7in8cjjl38c7xw67jr42d717kk5kkfac7rprk0z7pb104l"; }; nativeBuildInputs = [ @@ -36,7 +36,7 @@ stdenv.mkDerivation rec { cp -a Luna* $out/share/icons for theme in $out/share/icons/*; do - gtk-update-icon-cache $theme + gtk-update-icon-cache "$theme" done runHook postInstall diff --git a/pkgs/data/misc/conway_polynomials/default.nix b/pkgs/data/misc/conway_polynomials/default.nix index 48b538fe183..f51d2293a7e 100644 --- a/pkgs/data/misc/conway_polynomials/default.nix +++ b/pkgs/data/misc/conway_polynomials/default.nix @@ -35,7 +35,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "Contains a small database of Conway polynomials."; + description = "Contains a small database of Conway polynomials"; license = licenses.gpl2; platforms = platforms.all; maintainers = with maintainers; [ timokau ]; diff --git a/pkgs/data/misc/hackage/default.nix b/pkgs/data/misc/hackage/default.nix index d390445f315..c9950d9fcd1 100644 --- a/pkgs/data/misc/hackage/default.nix +++ b/pkgs/data/misc/hackage/default.nix @@ -1,6 +1,6 @@ { fetchurl }: fetchurl { - url = "https://github.com/commercialhaskell/all-cabal-hashes/archive/cc32e957fbe01d248c9a0e99253fadb37fd3adfa.tar.gz"; - sha256 = "121n26r3sm55ycwh6m71n4823c5af3hfpc497g4prf1j2n4yh2dl"; + url = "https://github.com/commercialhaskell/all-cabal-hashes/archive/197a82b352062bfeeefd4b62bfec19dd51a3728d.tar.gz"; + sha256 = "11c9a67j421vf6a7vvh280gsmssf49rxqnamdp1n9iljkhlfh5z1"; } diff --git a/pkgs/data/themes/arc/default.nix b/pkgs/data/themes/arc/default.nix index 66be070bdf4..bbbfbe7fe5c 100644 --- a/pkgs/data/themes/arc/default.nix +++ b/pkgs/data/themes/arc/default.nix @@ -2,7 +2,7 @@ , fetchFromGitHub , sassc , autoreconfHook -, pkgconfig +, pkg-config , gtk3 , gnome3 , gtk-engine-murrine @@ -13,18 +13,18 @@ stdenv.mkDerivation rec { pname = "arc-theme"; - version = "20200819"; + version = "20201013"; src = fetchFromGitHub { owner = "jnsh"; repo = pname; rev = version; - sha256 = "1l5sc4r5jp3526r4p32fszny0cw6pkb45cp424hq0s0k344z9px6"; + sha256 = "1x2l1mwjx68dwf3jb1i90c1q8nqsl1wf2zggcn8im6590k5yv39s"; }; nativeBuildInputs = [ autoreconfHook - pkgconfig + pkg-config sassc optipng inkscape @@ -56,7 +56,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Flat theme with transparent elements for GTK 3, GTK 2 and Gnome Shell"; homepage = "https://github.com/jnsh/arc-theme"; - license = licenses.gpl3; + license = licenses.gpl3Only; platforms = platforms.linux; maintainers = with maintainers; [ simonvandel romildo ]; }; diff --git a/pkgs/data/themes/lounge/default.nix b/pkgs/data/themes/lounge/default.nix index cda1a4e7d0b..a62ff72db6f 100644 --- a/pkgs/data/themes/lounge/default.nix +++ b/pkgs/data/themes/lounge/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "lounge-gtk-theme"; - version = "1.22"; + version = "1.24"; src = fetchFromGitHub { owner = "monday15"; repo = pname; rev = version; - sha256 = "1y1wkfsv2zrxqcqr53lmr9743mvzcy4swi5j6sxmk1aykx6ccs1p"; + sha256 = "0ima0aa5j296xn4y0d1zj6vcdrdpnihqdidj7bncxzgbnli1vazs"; }; nativeBuildInputs = [ meson ninja sassc gtk3 ]; diff --git a/pkgs/data/themes/marwaita-ubuntu/default.nix b/pkgs/data/themes/marwaita-ubuntu/default.nix new file mode 100644 index 00000000000..0241748bc43 --- /dev/null +++ b/pkgs/data/themes/marwaita-ubuntu/default.nix @@ -0,0 +1,46 @@ +{ stdenv +, fetchFromGitHub +, gdk-pixbuf +, gtk-engine-murrine +, gtk_engines +, librsvg +}: + +stdenv.mkDerivation rec { + pname = "marwaita-ubuntu"; + version = "1.5"; + + src = fetchFromGitHub { + owner = "darkomarko42"; + repo = pname; + rev = version; + sha256 = "0mld78s6gl5kfsdaqa7xs5mvfng9600pd2d9sp2b2q5axx7wjay5"; + }; + + buildInputs = [ + gdk-pixbuf + gtk_engines + librsvg + ]; + + propagatedUserEnvPkgs = [ + gtk-engine-murrine + ]; + + dontBuild = true; + + installPhase = '' + runHook preInstall + mkdir -p $out/share/themes + cp -a Marwaita* $out/share/themes + runHook postInstall + ''; + + meta = with stdenv.lib; { + description = "Ubuntu Style of Marwaita GTK theme"; + homepage = "https://www.pling.com/p/1352833/"; + license = licenses.gpl3Only; + platforms = platforms.unix; + maintainers = [ maintainers.romildo ]; + }; +} diff --git a/pkgs/data/themes/matcha/default.nix b/pkgs/data/themes/matcha/default.nix index bc077669550..7ed6acb2800 100644 --- a/pkgs/data/themes/matcha/default.nix +++ b/pkgs/data/themes/matcha/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "matcha-gtk-theme"; - version = "2020-10-05"; + version = "2020-10-23"; src = fetchFromGitHub { owner = "vinceliuice"; repo = pname; rev = version; - sha256 = "0pkgpipffwxphn16p6r911mbhqhjyk60svirxzm2phlhxl0ddwpj"; + sha256 = "125wcvr457lbs8zxp8r18q7gzagp0wbg518iynzmbax8gsjds8w3"; }; buildInputs = [ gdk-pixbuf librsvg ]; diff --git a/pkgs/data/themes/numix-solarized/default.nix b/pkgs/data/themes/numix-solarized/default.nix index ae8a1d7145e..356f7d33b26 100644 --- a/pkgs/data/themes/numix-solarized/default.nix +++ b/pkgs/data/themes/numix-solarized/default.nix @@ -1,33 +1,29 @@ -{ stdenv, fetchFromGitHub, python3, sass, glib, gdk-pixbuf, libxml2, - inkscape, optipng, gtk-engine-murrine -}: +{ stdenv, fetchFromGitHub, python3, sassc, glib, gdk-pixbuf, inkscape, gtk-engine-murrine }: stdenv.mkDerivation rec { - version = "20180913"; + version = "20200910"; pname = "numix-solarized-gtk-theme"; src = fetchFromGitHub { owner = "Ferdi265"; repo = "numix-solarized-gtk-theme"; rev = version; - sha256 = "1kda0lyqi3cxh163fbj8yyi6jj6pf0y980k4s0cmyi3hkh4cqyd5"; + sha256 = "05h1563sy6sfz76jadxsf730mav6bbjsk9xnadv49r16b8n8p9a9"; }; - nativeBuildInputs = [ python3 sass glib gdk-pixbuf libxml2 inkscape optipng ]; + nativeBuildInputs = [ python3 sassc glib gdk-pixbuf inkscape ]; propagatedUserEnvPkgs = [ gtk-engine-murrine ]; postPatch = '' patchShebangs . substituteInPlace Makefile --replace '$(DESTDIR)'/usr $out - substituteInPlace scripts/render-assets.sh \ - --replace /usr/bin/inkscape ${inkscape}/bin/inkscape \ - --replace /usr/bin/optipng ${optipng}/bin/optipng ''; buildPhase = "true"; installPhase = '' + HOME="$NIX_BUILD_ROOT" # shut up inkscape's warnings for theme in *.colors; do make THEME="''${theme/.colors/}" install done diff --git a/pkgs/data/themes/stilo/default.nix b/pkgs/data/themes/stilo/default.nix index ecef868f287..066d122d441 100644 --- a/pkgs/data/themes/stilo/default.nix +++ b/pkgs/data/themes/stilo/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "stilo-themes"; - version = "3.36-2"; + version = "3.36-3"; src = fetchFromGitHub { owner = "lassekongo83"; repo = pname; rev = "v${version}"; - sha256 = "0w4il6rk1f8yjmdxpnzq6zll2jjqbyp9dckxhzxgs4zh8fy9pzvh"; + sha256 = "0haxzqxyfx3rc305w7f744fp2xb6j7yn28ldynnvmm47h7ga3as3"; }; nativeBuildInputs = [ meson ninja sassc ]; @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Minimalistic GTK, gnome shell and Xfce themes"; homepage = "https://github.com/lassekongo83/stilo-themes"; - license = licenses.gpl3; + license = licenses.gpl3Only; platforms = platforms.linux; maintainers = [ maintainers.romildo ]; }; diff --git a/pkgs/desktops/cdesktopenv/default.nix b/pkgs/desktops/cdesktopenv/default.nix index 60ea33ca6ba..7e6b49957b8 100644 --- a/pkgs/desktops/cdesktopenv/default.nix +++ b/pkgs/desktops/cdesktopenv/default.nix @@ -74,5 +74,6 @@ EOF license = licenses.lgpl2; maintainers = [ maintainers.gnidorah ]; platforms = [ "i686-linux" "x86_64-linux" ]; + broken = true; # not compatible with glibc 2.32 }; } diff --git a/pkgs/desktops/cinnamon/cinnamon-desktop/default.nix b/pkgs/desktops/cinnamon/cinnamon-desktop/default.nix index cdb8e6a381f..71eb54ea202 100644 --- a/pkgs/desktops/cinnamon/cinnamon-desktop/default.nix +++ b/pkgs/desktops/cinnamon/cinnamon-desktop/default.nix @@ -17,13 +17,13 @@ stdenv.mkDerivation rec { pname = "cinnamon-desktop"; - version = "4.6.1"; + version = "4.6.4"; src = fetchFromGitHub { owner = "linuxmint"; repo = pname; rev = version; - sha256 = "0299m41vy4kcsi74z793ligvqj8nyy3fbzh6xz89jd8l3p9kgrz8"; + sha256 = "08z5hgc6dwdp9fczm75axwh8q9665iz4y2lxp92xp62r3k0v9fvd"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/desktops/cinnamon/cinnamon-menus/default.nix b/pkgs/desktops/cinnamon/cinnamon-menus/default.nix index bae9615fb9f..9edc1368707 100644 --- a/pkgs/desktops/cinnamon/cinnamon-menus/default.nix +++ b/pkgs/desktops/cinnamon/cinnamon-menus/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "cinnamon-menus"; - version = "4.6.0"; + version = "4.6.1"; src = fetchFromGitHub { owner = "linuxmint"; repo = pname; rev = version; - sha256 = "00jzb3fd96ydi15lrnwnjai12wvka5zlandn9xc61s8iim48lplq"; + sha256 = "1qdaql4mknhzvl2qi1pyw4c820lqb7lg07gblh0wzfk4f7h8hddx"; }; buildInputs = [ diff --git a/pkgs/desktops/cinnamon/cinnamon-session/default.nix b/pkgs/desktops/cinnamon/cinnamon-session/default.nix index 9e142095961..4e9c09f4d73 100644 --- a/pkgs/desktops/cinnamon/cinnamon-session/default.nix +++ b/pkgs/desktops/cinnamon/cinnamon-session/default.nix @@ -27,13 +27,13 @@ stdenv.mkDerivation rec { pname = "cinnamon-session"; - version = "4.6.1"; + version = "4.6.2"; src = fetchFromGitHub { owner = "linuxmint"; repo = pname; rev = version; - sha256 = "13qqi3zqybz00czh0g5nqjx5iwna54cxd7mk9wkp30kj6raa4qca"; + sha256 = "133vpgs0dqr16pvx5wyxhfcargn9wl14z0q99m2pn93hf6zycmsv"; }; patches = [ diff --git a/pkgs/desktops/cinnamon/cinnamon-settings-daemon/default.nix b/pkgs/desktops/cinnamon/cinnamon-settings-daemon/default.nix index 418107673a3..4788af89731 100644 --- a/pkgs/desktops/cinnamon/cinnamon-settings-daemon/default.nix +++ b/pkgs/desktops/cinnamon/cinnamon-settings-daemon/default.nix @@ -28,6 +28,7 @@ , fontconfig , tzdata , nss +, libgudev }: stdenv.mkDerivation rec { @@ -83,6 +84,7 @@ stdenv.mkDerivation rec { xorg.libXfixes fontconfig nss + libgudev ]; nativeBuildInputs = [ diff --git a/pkgs/desktops/cinnamon/cjs/default.nix b/pkgs/desktops/cinnamon/cjs/default.nix index a810bdcc03e..6471d06cd51 100644 --- a/pkgs/desktops/cinnamon/cjs/default.nix +++ b/pkgs/desktops/cinnamon/cjs/default.nix @@ -27,14 +27,14 @@ }: stdenv.mkDerivation rec { - pname = "cjs"; - version = "4.6.0-gjs-1.66.0"; + pname = "cjs-unstable"; + version = "2020-10-19"; src = fetchFromGitHub { - owner = "leigh123linux"; - repo = pname; - rev = "gjs-1.66.0"; - sha256 = "1pccz7h8mwljziflhn04gmfnbl99pvcj1byz1c6zn947v5gqskj1"; + owner = "linuxmint"; + repo = "cjs"; + rev = "befc11adb5ba10681464e6fa81b1a79f108ce61c"; + hash = "sha256-F2t8uKV2r29NxX2+3mYp5x1bug2lwihJZTK1dSS8rPg="; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/desktops/enlightenment/efl/default.nix b/pkgs/desktops/enlightenment/efl/default.nix index 0ba607524ab..f8cb1a1c744 100644 --- a/pkgs/desktops/enlightenment/efl/default.nix +++ b/pkgs/desktops/enlightenment/efl/default.nix @@ -56,11 +56,11 @@ stdenv.mkDerivation rec { pname = "efl"; - version = "1.25.0"; + version = "1.25.1"; src = fetchurl { url = "http://download.enlightenment.org/rel/libs/${pname}/${pname}-${version}.tar.xz"; - sha256 = "0vlmf0rp2qxdl06pdmrd1xdfa10sdz30vnxzc98inpdg1n8iz52k"; + sha256 = "0svybbrvpf6q955y6fclxh3md64z0dgmh0x54x2j60503hhs071m"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/enlightenment/evisum/default.nix b/pkgs/desktops/enlightenment/evisum/default.nix index 7b97d871e60..fef15ce79fe 100644 --- a/pkgs/desktops/enlightenment/evisum/default.nix +++ b/pkgs/desktops/enlightenment/evisum/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "evisum"; - version = "0.5.6"; + version = "0.5.7"; src = fetchurl { url = "https://download.enlightenment.org/rel/apps/${pname}/${pname}-${version}.tar.xz"; - sha256 = "1l8pym7738kncvic5ga03sj9d5igigvmcxa9lbg47z2yvdjwzv97"; + sha256 = "0pm63n3rls8vkjv3awq0f3zlqk33ddql3g0rl2bc46n48g2mcmbd"; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/gnome-3/extensions/material-shell/default.nix b/pkgs/desktops/gnome-3/extensions/material-shell/default.nix index 36de0e0a66a..87869f27d45 100644 --- a/pkgs/desktops/gnome-3/extensions/material-shell/default.nix +++ b/pkgs/desktops/gnome-3/extensions/material-shell/default.nix @@ -1,25 +1,16 @@ -{ stdenv, lib, fetchFromGitHub, gnome3, fetchpatch }: +{ stdenv, lib, fetchFromGitHub, gnome3 }: stdenv.mkDerivation rec { pname = "gnome-shell-extension-material-shell"; - version = "7"; + version = "8"; src = fetchFromGitHub { owner = "material-shell"; repo = "material-shell"; rev = version; - sha256 = "076cv1l5qr5x71przjwvbzx0m91n4z0byc2gc3r48l8vsr2d0hwf"; + sha256 = "08zc6xl2b7k7l5l6afr40ii3gnxxbysan3cqv2s9g614rbsmc62r"; }; - patches = [ - # Fix for https://github.com/material-shell/material-shell/issues/284 - # (Remove this patch when updating to version >= 8) - (fetchpatch { - url = "https://github.com/material-shell/material-shell/commit/fc27489a1ec503a4a5c7cb2f4e1eefa84a7ea2f1.patch"; - sha256 = "0x2skg955c4jqgwbkfhk7plm8bh1qnk66cdds796bzkp3hb5syw8"; - }) - ]; - # This package has a Makefile, but it's used for building a zip for # publication to extensions.gnome.org. Disable the build phase so # installing doesn't build an unnecessary release. diff --git a/pkgs/desktops/gnome-3/games/iagno/default.nix b/pkgs/desktops/gnome-3/games/iagno/default.nix index 0263de1c9b0..06831ecd0a9 100644 --- a/pkgs/desktops/gnome-3/games/iagno/default.nix +++ b/pkgs/desktops/gnome-3/games/iagno/default.nix @@ -1,6 +1,20 @@ -{ stdenv, fetchurl, pkgconfig, gtk3, gnome3, gdk-pixbuf, librsvg, wrapGAppsHook -, itstool, gsound, libxml2 -, meson, ninja, python3, vala, desktop-file-utils +{ stdenv +, fetchurl +, fetchpatch +, pkg-config +, gtk3 +, gnome3 +, gdk-pixbuf +, librsvg +, wrapGAppsHook +, itstool +, gsound +, libxml2 +, meson +, ninja +, python3 +, vala +, desktop-file-utils }: stdenv.mkDerivation rec { @@ -12,13 +26,34 @@ stdenv.mkDerivation rec { sha256 = "1fh2cvyqbz8saf2wij0bz2r9bja2k4gy6fqvbvig4gv0lx66gl29"; }; - nativeBuildInputs = [ - meson ninja python3 vala desktop-file-utils - pkgconfig wrapGAppsHook itstool libxml2 + patches = [ + # Fix build with Meson 0.55 + # https://gitlab.gnome.org/GNOME/iagno/-/issues/16 + (fetchpatch { + url = "https://gitlab.gnome.org/GNOME/iagno/commit/0100bab269f2102f24a6e41202b931da1b6e8dc5.patch"; + sha256 = "ZW75s+bV45ivwA+SKUN7ejSvnXYEo/kYQjDVvFBA/sg="; + }) ]; - buildInputs = [ gtk3 gnome3.adwaita-icon-theme gdk-pixbuf librsvg gsound ]; - enableParallelBuilding = true; + nativeBuildInputs = [ + meson + ninja + python3 + vala + desktop-file-utils + pkg-config + wrapGAppsHook + itstool + libxml2 + ]; + + buildInputs = [ + gtk3 + gnome3.adwaita-icon-theme + gdk-pixbuf + librsvg + gsound + ]; passthru = { updateScript = gnome3.updateScript { @@ -31,7 +66,7 @@ stdenv.mkDerivation rec { homepage = "https://wiki.gnome.org/Apps/Iagno"; description = "Computer version of the game Reversi, more popularly called Othello"; maintainers = teams.gnome.members; - license = licenses.gpl2; + license = licenses.gpl3Plus; platforms = platforms.linux; }; } diff --git a/pkgs/desktops/lxde/core/lxrandr/default.nix b/pkgs/desktops/lxde/core/lxrandr/default.nix index 421c999ea2f..ab109f3c6d4 100644 --- a/pkgs/desktops/lxde/core/lxrandr/default.nix +++ b/pkgs/desktops/lxde/core/lxrandr/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { buildInputs = [ libX11 (if withGtk3 then gtk3 else gtk2) xrandr ]; meta = with stdenv.lib; { - description = "LXRandR is the standard screen manager of LXDE."; + description = "Standard screen manager of LXDE"; homepage = "https://lxde.org/"; license = stdenv.lib.licenses.gpl2; maintainers = with maintainers; [ rawkode ]; diff --git a/pkgs/desktops/pantheon/apps/switchboard-plugs/about/default.nix b/pkgs/desktops/pantheon/apps/switchboard-plugs/about/default.nix index 86db11a3dc3..f174c41abc7 100644 --- a/pkgs/desktops/pantheon/apps/switchboard-plugs/about/default.nix +++ b/pkgs/desktops/pantheon/apps/switchboard-plugs/about/default.nix @@ -1,5 +1,6 @@ { stdenv , fetchFromGitHub +, fetchpatch , nix-update-script , pantheon , substituteAll @@ -47,6 +48,20 @@ stdenv.mkDerivation rec { ]; patches = [ + # Get OS Info from GLib.Environment + # https://github.com/elementary/switchboard-plug-about/pull/128 + (fetchpatch { + url = "https://github.com/elementary/switchboard-plug-about/commit/5ed29988e3a895b2df66e5529df0f12a94d5517c.patch"; + sha256 = "1ipDxnpDZjpSEzZdtOeNe5U+QOXiB5M+hC3yDAsl/rQ="; + }) + + # Use Pretty Name + # https://github.com/elementary/switchboard-plug-about/pull/134 + (fetchpatch { + url = "https://github.com/elementary/switchboard-plug-about/commit/653d131dc8fac10ae7523f2bf6b179ffffa9c0fd.patch"; + sha256 = "AsM49Dc9/yn2tG6fqjfedeOlDXUu+iEoyNUmNYLH+zE="; + }) + (substituteAll { src = ./fix-paths.patch; inherit pciutils; diff --git a/pkgs/desktops/pantheon/apps/switchboard/wrapper.nix b/pkgs/desktops/pantheon/apps/switchboard/wrapper.nix index 67f4105ff3d..7953105951c 100644 --- a/pkgs/desktops/pantheon/apps/switchboard/wrapper.nix +++ b/pkgs/desktops/pantheon/apps/switchboard/wrapper.nix @@ -8,15 +8,18 @@ , plugs # Only useful to disable for development testing. , useDefaultPlugs ? true +, testName ? null }: let selectedPlugs = if plugs == null then switchboardPlugs else plugs ++ (lib.optionals useDefaultPlugs switchboardPlugs); + + testingName = lib.optionalString (testName != null) "${testName}-"; in stdenv.mkDerivation rec { - name = "${switchboard.name}-with-plugs"; + name = "${testingName}${switchboard.name}-with-plugs"; src = null; diff --git a/pkgs/desktops/pantheon/desktop/wingpanel-indicators/bluetooth/default.nix b/pkgs/desktops/pantheon/desktop/wingpanel-indicators/bluetooth/default.nix index 51c87d5f34b..995577b80d0 100644 --- a/pkgs/desktops/pantheon/desktop/wingpanel-indicators/bluetooth/default.nix +++ b/pkgs/desktops/pantheon/desktop/wingpanel-indicators/bluetooth/default.nix @@ -18,13 +18,13 @@ stdenv.mkDerivation rec { pname = "wingpanel-indicator-bluetooth"; - version = "2.1.5"; + version = "unstable-2020-10-01"; src = fetchFromGitHub { owner = "elementary"; repo = pname; - rev = version; - sha256 = "sha256-txEjChutJCse/WjgQEfo+MSeeGWdpHUABGCsAqK6i3o="; + rev = "2b59d646ea0d66ae45dafc851374f24dcd98c064"; + sha256 = "sha256-selp70P+7RhbdHF6iiNmcNbMf/c+B9zZ6nlxwRSZGn4="; }; passthru = { diff --git a/pkgs/desktops/pantheon/desktop/wingpanel-indicators/session/default.nix b/pkgs/desktops/pantheon/desktop/wingpanel-indicators/session/default.nix index 4812e2bc91d..914db6cc8a9 100644 --- a/pkgs/desktops/pantheon/desktop/wingpanel-indicators/session/default.nix +++ b/pkgs/desktops/pantheon/desktop/wingpanel-indicators/session/default.nix @@ -16,28 +16,15 @@ stdenv.mkDerivation rec { pname = "wingpanel-indicator-session"; - version = "2.2.8"; + version = "unstable-2020-09-13"; src = fetchFromGitHub { owner = "elementary"; repo = pname; - rev = version; - sha256 = "sha256-iBbYOeGlv2lUFSK1qcd+4UJlCP/KCtdkx6i73jq6Ngo="; + rev = "e65c95f46adbfd598ad61933394d7bc3c5998278"; + sha256 = "sha256-QKOfgAc6pDQYpETrFunZB6+rF1P8XIf0pjft/t9aWW0="; }; - patches = [ - # build failure in vala 0.48.7 - # https://github.com/elementary/gala/pull/869#issuecomment-657147695 - (fetchpatch { - url = "https://github.com/elementary/wingpanel-indicator-session/commit/ead6971c708eed8b844bd9acd7eed2ab8a97e803.patch"; - sha256 = "1v7w7zdia82d38ycr5zhckaxgf7gr15hsv05cv5khlki8frryn2x"; - }) - (fetchpatch { - url = "https://github.com/elementary/wingpanel-indicator-session/commit/85347e676054635ac878fc542bd057398ca70d3e.patch"; - sha256 = "1vw4zx0qbhxmfzqhdcmwdp4fxvij7n3f5lwcplf5v3k9qsr3wm0n"; - }) - ]; - passthru = { updateScript = nix-update-script { attrPath = "pantheon.${pname}"; diff --git a/pkgs/desktops/xfce/panel-plugins/xfce4-netload-plugin/default.nix b/pkgs/desktops/xfce/panel-plugins/xfce4-netload-plugin/default.nix index 8d258220175..4ee50a07a34 100644 --- a/pkgs/desktops/xfce/panel-plugins/xfce4-netload-plugin/default.nix +++ b/pkgs/desktops/xfce/panel-plugins/xfce4-netload-plugin/default.nix @@ -11,6 +11,6 @@ mkXfceDerivation { buildInputs = [ gtk3 libxfce4ui libxfce4util xfce4-panel xfconf ]; meta = { - description = "Battery plugin for Xfce panel"; + description = "Internet load speed plugin for Xfce4 panel"; }; } diff --git a/pkgs/development/beam-modules/default.nix b/pkgs/development/beam-modules/default.nix index 7fbec79cbd4..a5de4dfb3bb 100644 --- a/pkgs/development/beam-modules/default.nix +++ b/pkgs/development/beam-modules/default.nix @@ -36,7 +36,12 @@ let buildMix = callPackage ./build-mix.nix {}; # BEAM-based languages. - elixir = elixir_1_10; + elixir = elixir_1_11; + + elixir_1_11 = lib.callElixir ../interpreters/elixir/1.11.nix { + inherit erlang; + debugInfo = true; + }; elixir_1_10 = lib.callElixir ../interpreters/elixir/1.10.nix { inherit erlang; diff --git a/pkgs/development/compilers/abcl/default.nix b/pkgs/development/compilers/abcl/default.nix index edcf722f255..f27abda03d1 100644 --- a/pkgs/development/compilers/abcl/default.nix +++ b/pkgs/development/compilers/abcl/default.nix @@ -1,11 +1,11 @@ {stdenv, fetchurl, ant, jre, jdk}: stdenv.mkDerivation rec { pname = "abcl"; - version = "1.7.1"; + version = "1.8.0"; # or fetchFromGitHub(owner,repo,rev) or fetchgit(rev) src = fetchurl { url = "https://common-lisp.net/project/armedbear/releases/${version}/${pname}-src-${version}.tar.gz"; - sha256 = "09wjcjvriagml740krg9nva5v6bsc3sav86dmb55pjvfpsr1846m"; + sha256 = "0wpfj7q9vq2k2mkp2wx2yvrcq0v8229ddyk8viiaizs7msn588ac"; }; configurePhase = '' mkdir nix-tools diff --git a/pkgs/development/compilers/acme/default.nix b/pkgs/development/compilers/acme/default.nix index c5a997ad75b..89c5620f5fc 100644 --- a/pkgs/development/compilers/acme/default.nix +++ b/pkgs/development/compilers/acme/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "A multi-platform cross assembler for 6502/6510/65816 CPUs."; + description = "A multi-platform cross assembler for 6502/6510/65816 CPUs"; homepage = "https://sourceforge.net/projects/acme-crossass/"; license = licenses.gpl2Plus; platforms = platforms.all; diff --git a/pkgs/development/compilers/bs-platform/default.nix b/pkgs/development/compilers/bs-platform/default.nix index 18436bca347..6eb7d50bfc8 100644 --- a/pkgs/development/compilers/bs-platform/default.nix +++ b/pkgs/development/compilers/bs-platform/default.nix @@ -18,7 +18,7 @@ in }; }).overrideAttrs (attrs: { meta = with stdenv.lib; { - description = "A JavaScript backend for OCaml focused on smooth integration and clean generated code."; + description = "A JavaScript backend for OCaml focused on smooth integration and clean generated code"; homepage = "https://bucklescript.github.io"; license = licenses.lgpl3; maintainers = with maintainers; [ turbomack gamb anmonteiro ]; diff --git a/pkgs/development/compilers/chez/default.nix b/pkgs/development/compilers/chez/default.nix index 864ccc5a743..550f754639e 100644 --- a/pkgs/development/compilers/chez/default.nix +++ b/pkgs/development/compilers/chez/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "chez-scheme"; - version = "9.5.2"; + version = "9.5.4"; src = fetchFromGitHub { owner = "cisco"; repo = "ChezScheme"; rev = "refs/tags/v${version}"; - sha256 = "1gsjmsvsj31q5l9bjvm869y7bakrvl41yq94vyqdx8zwcr1bmpjf"; + sha256 = "065dir19cqpn0d1bk9w49wnwzn6qfrgvcqw8da2fdhkafhfcb1bj"; fetchSubmodules = true; }; diff --git a/pkgs/development/compilers/copper/default.nix b/pkgs/development/compilers/copper/default.nix index 4d24c78f25f..67bc786e669 100644 --- a/pkgs/development/compilers/copper/default.nix +++ b/pkgs/development/compilers/copper/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { make BACKEND=elf64 install prefix=$out ''; meta = with stdenv.lib; { - description = "Simple imperative language, statically typed with type inference and genericity."; + description = "Simple imperative language, statically typed with type inference and genericity"; homepage = "https://tibleiz.net/copper/"; license = licenses.bsd2; platforms = platforms.x86_64; diff --git a/pkgs/development/compilers/dtc/default.nix b/pkgs/development/compilers/dtc/default.nix index b7fcbe1c611..0a694e29ee8 100644 --- a/pkgs/development/compilers/dtc/default.nix +++ b/pkgs/development/compilers/dtc/default.nix @@ -13,7 +13,6 @@ stdenv.mkDerivation rec { }; nativeBuildInputs = [ flex bison pkgconfig which ] ++ lib.optionals pythonSupport [ python swig ]; - buildInputs = lib.optionals pythonSupport [ python ]; postPatch = '' patchShebangs pylibfdt/ diff --git a/pkgs/development/compilers/ecl/default.nix b/pkgs/development/compilers/ecl/default.nix index 65f6884cd55..0b37dcf64fc 100644 --- a/pkgs/development/compilers/ecl/default.nix +++ b/pkgs/development/compilers/ecl/default.nix @@ -1,5 +1,6 @@ {stdenv, fetchurl , libtool, autoconf, automake +, texinfo , gmp, mpfr, libffi, makeWrapper , noUnicode ? false , gcc @@ -10,14 +11,13 @@ let s = # Generated upstream information rec { baseName="ecl"; - version="16.1.3"; + version="20.4.24"; name="${baseName}-${version}"; - hash="0m0j24w5d5a9dwwqyrg0d35c0nys16ijb4r0nyk87yp82v38b9bn"; - url="https://common-lisp.net/project/ecl/static/files/release/ecl-16.1.3.tgz"; - sha256="0m0j24w5d5a9dwwqyrg0d35c0nys16ijb4r0nyk87yp82v38b9bn"; + url="https://common-lisp.net/project/ecl/static/files/release/${name}.tgz"; + sha256="01qgdmr54wkj854f69qdm9sybrvd6gd21dpx4askdaaqybnkh237"; }; buildInputs = [ - libtool autoconf automake makeWrapper + libtool autoconf automake texinfo makeWrapper ]; propagatedBuildInputs = [ libffi gmp mpfr gcc @@ -36,7 +36,6 @@ stdenv.mkDerivation { }; patches = [ - ./libffi-3.3-abi.patch ]; configureFlags = [ diff --git a/pkgs/development/compilers/ecl/libffi-3.3-abi.patch b/pkgs/development/compilers/ecl/libffi-3.3-abi.patch deleted file mode 100644 index 0a2b5f4dd56..00000000000 --- a/pkgs/development/compilers/ecl/libffi-3.3-abi.patch +++ /dev/null @@ -1,15 +0,0 @@ -diff --git a/src/c/ffi.d b/src/c/ffi.d -index 8174977a..caa69f39 100644 ---- a/src/c/ffi.d -+++ b/src/c/ffi.d -@@ -133,8 +133,8 @@ static struct { - #elif defined(X86_WIN64) - {@':win64', FFI_WIN64}, - #elif defined(X86_ANY) || defined(X86) || defined(X86_64) -- {@':cdecl', FFI_SYSV}, -- {@':sysv', FFI_SYSV}, -+ {@':cdecl', FFI_UNIX64}, -+ {@':sysv', FFI_UNIX64}, - {@':unix64', FFI_UNIX64}, - #endif - }; diff --git a/pkgs/development/compilers/elm/packages/node-packages.nix b/pkgs/development/compilers/elm/packages/node-packages.nix index a284ef470bb..58c9b9a4e91 100644 --- a/pkgs/development/compilers/elm/packages/node-packages.nix +++ b/pkgs/development/compilers/elm/packages/node-packages.nix @@ -4,13 +4,13 @@ let sources = { - "@babel/cli-7.11.6" = { + "@babel/cli-7.12.1" = { name = "_at_babel_slash_cli"; packageName = "@babel/cli"; - version = "7.11.6"; + version = "7.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/cli/-/cli-7.11.6.tgz"; - sha512 = "+w7BZCvkewSmaRM6H4L2QM3RL90teqEIHDIFXAmrW33+0jhlymnDAEdqVeCZATvxhQuio1ifoGVlJJbIiH9Ffg=="; + url = "https://registry.npmjs.org/@babel/cli/-/cli-7.12.1.tgz"; + sha512 = "eRJREyrfAJ2r42Iaxe8h3v6yyj1wu9OyosaUHW6UImjGf9ahGL9nsFNh7OCopvtcPL8WnEo7tp78wrZaZ6vG9g=="; }; }; "@babel/code-frame-7.0.0" = { @@ -31,31 +31,31 @@ let sha512 = "vG6SvB6oYEhvgisZNFRmRCUkLz11c7rp+tbNTynGqc6mS1d5ATd/sGyV6W0KZZnXRKMTzZDRgQT3Ou9jhpAfUg=="; }; }; - "@babel/compat-data-7.11.0" = { + "@babel/compat-data-7.12.1" = { name = "_at_babel_slash_compat-data"; packageName = "@babel/compat-data"; - version = "7.11.0"; + version = "7.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.11.0.tgz"; - sha512 = "TPSvJfv73ng0pfnEOh17bYMPQbI95+nGWc71Ss4vZdRBHTDqmM9Z8ZV4rYz8Ks7sfzc95n30k6ODIq5UGnXcYQ=="; + url = "https://registry.npmjs.org/@babel/compat-data/-/compat-data-7.12.1.tgz"; + sha512 = "725AQupWJZ8ba0jbKceeFblZTY90McUBWMwHhkFQ9q1zKPJ95GUktljFcgcsIVwRnTnRKlcYzfiNImg5G9m6ZQ=="; }; }; - "@babel/core-7.11.6" = { + "@babel/core-7.12.3" = { name = "_at_babel_slash_core"; packageName = "@babel/core"; - version = "7.11.6"; + version = "7.12.3"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/core/-/core-7.11.6.tgz"; - sha512 = "Wpcv03AGnmkgm6uS6k8iwhIwTrcP0m17TL1n1sy7qD0qelDu4XNeW0dN0mHfa+Gei211yDaLoEe/VlbXQzM4Bg=="; + url = "https://registry.npmjs.org/@babel/core/-/core-7.12.3.tgz"; + sha512 = "0qXcZYKZp3/6N2jKYVxZv0aNCsxTSVCiK72DTiTYZAu7sjg73W0/aynWjMbiGd87EQL4WyA8reiJVh92AVla9g=="; }; }; - "@babel/generator-7.11.6" = { + "@babel/generator-7.12.1" = { name = "_at_babel_slash_generator"; packageName = "@babel/generator"; - version = "7.11.6"; + version = "7.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/generator/-/generator-7.11.6.tgz"; - sha512 = "DWtQ1PV3r+cLbySoHrwn9RWEgKMBLLma4OBQloPRyDYvc5msJM9kvTLo1YnlJd1P/ZuKbdli3ijr5q3FvAF3uA=="; + url = "https://registry.npmjs.org/@babel/generator/-/generator-7.12.1.tgz"; + sha512 = "DB+6rafIdc9o72Yc3/Ph5h+6hUjeOp66pF0naQBgUFFuPqzQwIlPTm3xZR7YNvduIMtkDIj2t21LSQwnbCrXvg=="; }; }; "@babel/helper-annotate-as-pure-7.10.4" = { @@ -76,31 +76,31 @@ let sha512 = "L0zGlFrGWZK4PbT8AszSfLTM5sDU1+Az/En9VrdT8/LmEiJt4zXt+Jve9DCAnQcbqDhCI+29y/L93mrDzddCcg=="; }; }; - "@babel/helper-compilation-targets-7.10.4" = { + "@babel/helper-compilation-targets-7.12.1" = { name = "_at_babel_slash_helper-compilation-targets"; packageName = "@babel/helper-compilation-targets"; - version = "7.10.4"; + version = "7.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-compilation-targets/-/helper-compilation-targets-7.10.4.tgz"; - sha512 = "a3rYhlsGV0UHNDvrtOXBg8/OpfV0OKTkxKPzIplS1zpx7CygDcWWxckxZeDd3gzPzC4kUT0A4nVFDK0wGMh4MQ=="; + url = "https://registry.npmjs.org/@babel/helper-compilation-targets/-/helper-compilation-targets-7.12.1.tgz"; + sha512 = "jtBEif7jsPwP27GPHs06v4WBV0KrE8a/P7n0N0sSvHn2hwUCYnolP/CLmz51IzAW4NlN+HuoBtb9QcwnRo9F/g=="; }; }; - "@babel/helper-create-class-features-plugin-7.10.5" = { + "@babel/helper-create-class-features-plugin-7.12.1" = { name = "_at_babel_slash_helper-create-class-features-plugin"; packageName = "@babel/helper-create-class-features-plugin"; - version = "7.10.5"; + version = "7.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-create-class-features-plugin/-/helper-create-class-features-plugin-7.10.5.tgz"; - sha512 = "0nkdeijB7VlZoLT3r/mY3bUkw3T8WG/hNw+FATs/6+pG2039IJWjTYL0VTISqsNHMUTEnwbVnc89WIJX9Qed0A=="; + url = "https://registry.npmjs.org/@babel/helper-create-class-features-plugin/-/helper-create-class-features-plugin-7.12.1.tgz"; + sha512 = "hkL++rWeta/OVOBTRJc9a5Azh5mt5WgZUGAKMD8JM141YsE08K//bp1unBBieO6rUKkIPyUE0USQ30jAy3Sk1w=="; }; }; - "@babel/helper-create-regexp-features-plugin-7.10.4" = { + "@babel/helper-create-regexp-features-plugin-7.12.1" = { name = "_at_babel_slash_helper-create-regexp-features-plugin"; packageName = "@babel/helper-create-regexp-features-plugin"; - version = "7.10.4"; + version = "7.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-create-regexp-features-plugin/-/helper-create-regexp-features-plugin-7.10.4.tgz"; - sha512 = "2/hu58IEPKeoLF45DBwx3XFqsbCXmkdAay4spVr2x0jYgRxrSNp+ePwvSsy9g6YSaNDcKIQVPXk1Ov8S2edk2g=="; + url = "https://registry.npmjs.org/@babel/helper-create-regexp-features-plugin/-/helper-create-regexp-features-plugin-7.12.1.tgz"; + sha512 = "rsZ4LGvFTZnzdNZR5HZdmJVuXK8834R5QkF3WvcnBhrlVtF0HSIUC6zbreL9MgjTywhKokn8RIYRiq99+DLAxA=="; }; }; "@babel/helper-define-map-7.10.5" = { @@ -112,13 +112,13 @@ let sha512 = "fMw4kgFB720aQFXSVaXr79pjjcW5puTCM16+rECJ/plGS+zByelE8l9nCpV1GibxTnFVmUuYG9U8wYfQHdzOEQ=="; }; }; - "@babel/helper-explode-assignable-expression-7.11.4" = { + "@babel/helper-explode-assignable-expression-7.12.1" = { name = "_at_babel_slash_helper-explode-assignable-expression"; packageName = "@babel/helper-explode-assignable-expression"; - version = "7.11.4"; + version = "7.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-explode-assignable-expression/-/helper-explode-assignable-expression-7.11.4.tgz"; - sha512 = "ux9hm3zR4WV1Y3xXxXkdG/0gxF9nvI0YVmKVhvK9AfMoaQkemL3sJpXw+Xbz65azo8qJiEz2XVDUpK3KYhH3ZQ=="; + url = "https://registry.npmjs.org/@babel/helper-explode-assignable-expression/-/helper-explode-assignable-expression-7.12.1.tgz"; + sha512 = "dmUwH8XmlrUpVqgtZ737tK88v07l840z9j3OEhCLwKTkjlvKpfqXVIZ0wpK3aeOxspwGrf/5AP5qLx4rO3w5rA=="; }; }; "@babel/helper-function-name-7.10.4" = { @@ -148,31 +148,31 @@ let sha512 = "wljroF5PgCk2juF69kanHVs6vrLwIPNp6DLD+Lrl3hoQ3PpPPikaDRNFA+0t81NOoMt2DL6WW/mdU8k4k6ZzuA=="; }; }; - "@babel/helper-member-expression-to-functions-7.11.0" = { + "@babel/helper-member-expression-to-functions-7.12.1" = { name = "_at_babel_slash_helper-member-expression-to-functions"; packageName = "@babel/helper-member-expression-to-functions"; - version = "7.11.0"; + version = "7.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-member-expression-to-functions/-/helper-member-expression-to-functions-7.11.0.tgz"; - sha512 = "JbFlKHFntRV5qKw3YC0CvQnDZ4XMwgzzBbld7Ly4Mj4cbFy3KywcR8NtNctRToMWJOVvLINJv525Gd6wwVEx/Q=="; + url = "https://registry.npmjs.org/@babel/helper-member-expression-to-functions/-/helper-member-expression-to-functions-7.12.1.tgz"; + sha512 = "k0CIe3tXUKTRSoEx1LQEPFU9vRQfqHtl+kf8eNnDqb4AUJEy5pz6aIiog+YWtVm2jpggjS1laH68bPsR+KWWPQ=="; }; }; - "@babel/helper-module-imports-7.10.4" = { + "@babel/helper-module-imports-7.12.1" = { name = "_at_babel_slash_helper-module-imports"; packageName = "@babel/helper-module-imports"; - version = "7.10.4"; + version = "7.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-module-imports/-/helper-module-imports-7.10.4.tgz"; - sha512 = "nEQJHqYavI217oD9+s5MUBzk6x1IlvoS9WTPfgG43CbMEeStE0v+r+TucWdx8KFGowPGvyOkDT9+7DHedIDnVw=="; + url = "https://registry.npmjs.org/@babel/helper-module-imports/-/helper-module-imports-7.12.1.tgz"; + sha512 = "ZeC1TlMSvikvJNy1v/wPIazCu3NdOwgYZLIkmIyAsGhqkNpiDoQQRmaCK8YP4Pq3GPTLPV9WXaPCJKvx06JxKA=="; }; }; - "@babel/helper-module-transforms-7.11.0" = { + "@babel/helper-module-transforms-7.12.1" = { name = "_at_babel_slash_helper-module-transforms"; packageName = "@babel/helper-module-transforms"; - version = "7.11.0"; + version = "7.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-module-transforms/-/helper-module-transforms-7.11.0.tgz"; - sha512 = "02EVu8COMuTRO1TAzdMtpBPbe6aQ1w/8fePD2YgQmxZU4gpNWaL9gK3Jp7dxlkUlUCJOTaSeA+Hrm1BRQwqIhg=="; + url = "https://registry.npmjs.org/@babel/helper-module-transforms/-/helper-module-transforms-7.12.1.tgz"; + sha512 = "QQzehgFAZ2bbISiCpmVGfiGux8YVFXQ0abBic2Envhej22DVXV9nCFaS5hIQbkyo1AdGb+gNME2TSh3hYJVV/w=="; }; }; "@babel/helper-optimise-call-expression-7.10.4" = { @@ -202,40 +202,40 @@ let sha512 = "68kdUAzDrljqBrio7DYAEgCoJHxppJOERHOgOrDN7WjOzP0ZQ1LsSDRXcemzVZaLvjaJsJEESb6qt+znNuENDg=="; }; }; - "@babel/helper-remap-async-to-generator-7.11.4" = { + "@babel/helper-remap-async-to-generator-7.12.1" = { name = "_at_babel_slash_helper-remap-async-to-generator"; packageName = "@babel/helper-remap-async-to-generator"; - version = "7.11.4"; + version = "7.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-remap-async-to-generator/-/helper-remap-async-to-generator-7.11.4.tgz"; - sha512 = "tR5vJ/vBa9wFy3m5LLv2faapJLnDFxNWff2SAYkSE4rLUdbp7CdObYFgI7wK4T/Mj4UzpjPwzR8Pzmr5m7MHGA=="; + url = "https://registry.npmjs.org/@babel/helper-remap-async-to-generator/-/helper-remap-async-to-generator-7.12.1.tgz"; + sha512 = "9d0KQCRM8clMPcDwo8SevNs+/9a8yWVVmaE80FGJcEP8N1qToREmWEGnBn8BUlJhYRFz6fqxeRL1sl5Ogsed7A=="; }; }; - "@babel/helper-replace-supers-7.10.4" = { + "@babel/helper-replace-supers-7.12.1" = { name = "_at_babel_slash_helper-replace-supers"; packageName = "@babel/helper-replace-supers"; - version = "7.10.4"; + version = "7.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-replace-supers/-/helper-replace-supers-7.10.4.tgz"; - sha512 = "sPxZfFXocEymYTdVK1UNmFPBN+Hv5mJkLPsYWwGBxZAxaWfFu+xqp7b6qWD0yjNuNL2VKc6L5M18tOXUP7NU0A=="; + url = "https://registry.npmjs.org/@babel/helper-replace-supers/-/helper-replace-supers-7.12.1.tgz"; + sha512 = "zJjTvtNJnCFsCXVi5rUInstLd/EIVNmIKA1Q9ynESmMBWPWd+7sdR+G4/wdu+Mppfep0XLyG2m7EBPvjCeFyrw=="; }; }; - "@babel/helper-simple-access-7.10.4" = { + "@babel/helper-simple-access-7.12.1" = { name = "_at_babel_slash_helper-simple-access"; packageName = "@babel/helper-simple-access"; - version = "7.10.4"; + version = "7.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-simple-access/-/helper-simple-access-7.10.4.tgz"; - sha512 = "0fMy72ej/VEvF8ULmX6yb5MtHG4uH4Dbd6I/aHDb/JVg0bbivwt9Wg+h3uMvX+QSFtwr5MeItvazbrc4jtRAXw=="; + url = "https://registry.npmjs.org/@babel/helper-simple-access/-/helper-simple-access-7.12.1.tgz"; + sha512 = "OxBp7pMrjVewSSC8fXDFrHrBcJATOOFssZwv16F3/6Xtc138GHybBfPbm9kfiqQHKhYQrlamWILwlDCeyMFEaA=="; }; }; - "@babel/helper-skip-transparent-expression-wrappers-7.11.0" = { + "@babel/helper-skip-transparent-expression-wrappers-7.12.1" = { name = "_at_babel_slash_helper-skip-transparent-expression-wrappers"; packageName = "@babel/helper-skip-transparent-expression-wrappers"; - version = "7.11.0"; + version = "7.12.1"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-skip-transparent-expression-wrappers/-/helper-skip-transparent-expression-wrappers-7.11.0.tgz"; - 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"color-string-1.5.3" = { + "color-string-1.5.4" = { name = "color-string"; packageName = "color-string"; - version = "1.5.3"; + version = "1.5.4"; src = fetchurl { - url = "https://registry.npmjs.org/color-string/-/color-string-1.5.3.tgz"; - sha512 = "dC2C5qeWoYkxki5UAXapdjqO672AM4vZuPGRQfO8b5HKuKGBbKWpITyDYN7TOFKvRW7kOgAn3746clDBMDJyQw=="; + url = "https://registry.npmjs.org/color-string/-/color-string-1.5.4.tgz"; + sha512 = "57yF5yt8Xa3czSEW1jfQDE79Idk0+AkN/4KWad6tbdxUmAs3MvjxlWSWD4deYytcRfoZ9nhKyFl1kj5tBvidbw=="; }; }; "colorette-1.2.1" = { @@ -3325,13 +3334,13 @@ let sha512 = "a+EPoD+uZiNfh+5fxw2nO9QwFa6nJe2Or35fGY6Ipw1R3R4AGz1d1TEZrCegvw2YTmZ0jXirGYlzxxpYSHwpEg=="; }; }; - "css-what-3.4.1" = { + "css-what-3.4.2" = { name = "css-what"; packageName = "css-what"; - version = "3.4.1"; + version = "3.4.2"; src = fetchurl { - url = "https://registry.npmjs.org/css-what/-/css-what-3.4.1.tgz"; - sha512 = "wHOppVDKl4vTAOWzJt5Ek37Sgd9qq1Bmj/T1OjvicWbU5W7ru7Pqbn0Jdqii3Drx/h+dixHKXNhZYx7blthL7g=="; + url = "https://registry.npmjs.org/css-what/-/css-what-3.4.2.tgz"; + sha512 = "ACUm3L0/jiZTqfzRM3Hi9Q8eZqd6IK37mMWPLz9PJxkLWllYeRf+EHUSHYEtFop2Eqytaq1FizFVh7XfBnXCDQ=="; }; }; "cssesc-3.0.0" = { @@ -3865,13 +3874,13 @@ let sha1 = "590c61156b0ae2f4f0255732a158b266bc56b21d"; }; }; - "electron-to-chromium-1.3.576" = { + "electron-to-chromium-1.3.582" = { name = "electron-to-chromium"; packageName = "electron-to-chromium"; - version = "1.3.576"; + version = "1.3.582"; src = fetchurl { - url = "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.3.576.tgz"; - sha512 = "uSEI0XZ//5ic+0NdOqlxp0liCD44ck20OAGyLMSymIWTEAtHKVJi6JM18acOnRgUgX7Q65QqnI+sNncNvIy8ew=="; + url = "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.3.582.tgz"; + sha512 = "0nCJ7cSqnkMC+kUuPs0YgklFHraWGl/xHqtZWWtOeVtyi+YqkoAOMGuZQad43DscXCQI/yizcTa3u6B5r+BLww=="; }; }; "elliptic-6.5.3" = { @@ -4064,13 +4073,13 @@ let sha512 = "f2LZMYl1Fzu7YSBKg+RoROelpOaNrcGmE9AZubeDfrCEia483oW4MI4VyFd5VNHIgQ/7qm1I0wUHK1eJnn2y2w=="; }; }; - "entities-2.0.3" = { + "entities-2.1.0" = { name = "entities"; packageName = "entities"; - version = "2.0.3"; + version = "2.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/entities/-/entities-2.0.3.tgz"; - sha512 = "MyoZ0jgnLvB2X3Lg5HqpFmn1kybDiIfEQmKzTb5apr51Rb+T3KdmMiqa70T+bhGnyv7bQ6WMj2QMHpGMmlrUYQ=="; + url = "https://registry.npmjs.org/entities/-/entities-2.1.0.tgz"; + sha512 = "hCx1oky9PFrJ611mf0ifBLBRW8lUUVRlFolb5gWRfIELabBlbp9xZvrqZLZAs+NxFnbfQoeGd8wDkygjg7U85w=="; }; }; "errno-0.1.7" = { @@ -4127,13 +4136,13 @@ let sha512 = "HBL8I3mIki5C1Cc9QjKUenHtnG0A5/xA8Q/AllRcfiwl2CZFXGK7ddBiCoRwAix4i2KxcQfjtIVcrVbB3vbmwg=="; }; }; - "escalade-3.1.0" = { + "escalade-3.1.1" = { name = "escalade"; packageName = "escalade"; - version = "3.1.0"; + version = "3.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/escalade/-/escalade-3.1.0.tgz"; - sha512 = "mAk+hPSO8fLDkhV7V0dXazH5pDc6MrjBTPyD3VeKzxnVFjH1MIxbCdqGZB9O8+EwWakZs3ZCbDS4IpRt79V1ig=="; + url = "https://registry.npmjs.org/escalade/-/escalade-3.1.1.tgz"; + sha512 = "k0er2gUkLf8O0zKJiAhmkTnJlTvINGv7ygDNPbeIsX/TJjGJZHuh9B2UxbsaEkmlEo9MfhrSzmhIlhRlI2GXnw=="; }; }; "escape-html-1.0.3" = { @@ -4514,13 +4523,13 @@ let sha1 = "3ab1a2d2a62c8bfb431a0c94cb797a2fce27c962"; }; }; - "file-loader-6.1.0" = { + "file-loader-6.1.1" = { name = "file-loader"; packageName = "file-loader"; - version = "6.1.0"; + version = "6.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/file-loader/-/file-loader-6.1.0.tgz"; - sha512 = "26qPdHyTsArQ6gU4P1HJbAbnFTyT2r0pG7czh1GFAd9TZbj0n94wWbupgixZH/ET/meqi2/5+F7DhW4OAXD+Lg=="; + url = "https://registry.npmjs.org/file-loader/-/file-loader-6.1.1.tgz"; + sha512 = "Klt8C4BjWSXYQAfhpYYkG4qHNTna4toMHEbWrI5IuVoxbU6uiDKeKAP99R8mmbJi3lvewn/jQBOgU4+NS3tDQw=="; }; }; "file-uri-to-path-1.0.0" = { @@ -5711,15 +5720,6 @@ let sha512 = "S1zBo1D6zcsyuC6PMmY5+55YMILQ9av8lotMx447Bq6SAgo/sDK6y6uUKmuYhW7eacnIhFfsPmCNYdDzsnnDCg=="; }; }; - "invariant-2.2.4" = { - name = "invariant"; - packageName = "invariant"; - version = "2.2.4"; - src = fetchurl { - url = "https://registry.npmjs.org/invariant/-/invariant-2.2.4.tgz"; - sha512 = "phJfQVBuaJM5raOpJjSfkiD6BpbCE4Ns//LaXl6wGYtUBY83nWS6Rf9tXm2e8VaK60JEjYldbPif/A2B1C2gNA=="; - }; - }; "invert-kv-1.0.0" = { name = "invert-kv"; packageName = "invert-kv"; @@ -6296,13 +6296,13 @@ let sha512 = "DxjtyzOHjObRM+sM1knti6or+eOgcGU4xVSb2HNP1TqO4ahsT+rqZg+nyqHWJSvWgKC5cG3QjGFBqxLghiF/Ig=="; }; }; - "jest-util-26.5.0" = { + "jest-util-26.6.0" = { name = "jest-util"; packageName = "jest-util"; - version = "26.5.0"; + version = "26.6.0"; src = fetchurl { - url = "https://registry.npmjs.org/jest-util/-/jest-util-26.5.0.tgz"; - sha512 = "CSQ0uzE7JdHDCQo3K8jlyWRIF2xNLdpu9nbjo8okGDanaNsF7WonhusFvjOg7QiWn1SThe7wFRh8Jx2ls1Gx4Q=="; + url = "https://registry.npmjs.org/jest-util/-/jest-util-26.6.0.tgz"; + sha512 = "/cUGqcnKeZMjvTQLfJo65nBOEZ/k0RB/8usv2JpfYya05u0XvBmKkIH5o5c4nCh9DD61B1YQjMGGqh1Ha0aXdg=="; }; }; "js-tokens-4.0.0" = { @@ -6602,24 +6602,6 @@ let sha1 = "308accafa0bc483a3867b4b6f2b9506251d1b835"; }; }; - "leven-3.1.0" = { - name = "leven"; - packageName = "leven"; - version = "3.1.0"; - src = fetchurl { - url = "https://registry.npmjs.org/leven/-/leven-3.1.0.tgz"; - sha512 = "qsda+H8jTaUaN/x5vzW2rzc+8Rw4TAQ/4KjB46IwK5VH+IlVeeeje/EoZRpiXvIqjFgK84QffqPztGI3VBLG1A=="; - }; - }; - "levenary-1.1.1" = { - name = "levenary"; - packageName = "levenary"; - version = "1.1.1"; - src = fetchurl { - url = "https://registry.npmjs.org/levenary/-/levenary-1.1.1.tgz"; - sha512 = "mkAdOIt79FD6irqjYSs4rdbnlT5vRonMEvBVPVb3XmevfS8kgRXwfes0dhPdEtzTWD/1eNE/Bm/G1iRt6DcnQQ=="; - }; - }; "line-column-1.0.2" = { name = "line-column"; packageName = "line-column"; @@ -6782,15 +6764,6 @@ let sha512 = "i2sY04nal5jDcagM3FMfG++T69GEEM8CYuOfeOIvmXzOIcwE9a/CJPR0MFM97pYMj/u10lzz7/zd7+qwhrBTqQ=="; }; }; - "loose-envify-1.4.0" = { - name = "loose-envify"; - packageName = "loose-envify"; - version = "1.4.0"; - src = fetchurl { - url = "https://registry.npmjs.org/loose-envify/-/loose-envify-1.4.0.tgz"; - sha512 = "lyuxPGr/Wfhrlem2CL/UcnUc1zcqKAImBDzukY7Y5F/yQiNdko6+fRLevlw1HgMySw7f611UIY408EtxRSoK3Q=="; - }; - }; "lower-case-2.0.1" = { name = "lower-case"; packageName = "lower-case"; @@ -7097,13 +7070,13 @@ let sha512 = "wXqjST+SLt7R009ySCglWBCFpjUygmCIfD790/kVbiGmUgfYGuB14PiTd5DwVxSV4NcYHjzMkoj5LjQZwTQLEA=="; }; }; - "mini-css-extract-plugin-0.11.3" = { + "mini-css-extract-plugin-0.12.0" = { name = "mini-css-extract-plugin"; packageName = "mini-css-extract-plugin"; - version = "0.11.3"; + version = "0.12.0"; src = fetchurl { - url = "https://registry.npmjs.org/mini-css-extract-plugin/-/mini-css-extract-plugin-0.11.3.tgz"; - sha512 = "n9BA8LonkOkW1/zn+IbLPQmovsL0wMb9yx75fMJQZf2X1Zoec9yTZtyMePcyu19wPkmFbzZZA6fLTotpFhQsOA=="; + url = "https://registry.npmjs.org/mini-css-extract-plugin/-/mini-css-extract-plugin-0.12.0.tgz"; + sha512 = "z6PQCe9rd1XUwZ8gMaEVwwRyZlrYy8Ba1gRjFP5HcV51HkXX+XlwZ+a1iAYTjSYwgNBXoNR7mhx79mDpOn5fdw=="; }; }; "minimalistic-assert-1.0.1" = { @@ -7223,13 +7196,13 @@ let sha512 = "vVqVZQyf3WLx2Shd0qJ9xuvqgAyKPLAiqITEtqW0oIUjzo3PePDd6fW9iFz30ef7Ysp/oiWqbhszeGWW2T6Gzw=="; }; }; - "moment-2.29.0" = { + "moment-2.29.1" = { name = "moment"; packageName = "moment"; - version = "2.29.0"; + version = "2.29.1"; src = fetchurl { - url = "https://registry.npmjs.org/moment/-/moment-2.29.0.tgz"; - sha512 = "z6IJ5HXYiuxvFTI6eiQ9dm77uE0gyy1yXNApVHqTcnIKfY9tIwEjlzsZ6u1LQXvVgKeTnv9Xm7NDvJ7lso3MtA=="; + url = "https://registry.npmjs.org/moment/-/moment-2.29.1.tgz"; + sha512 = "kHmoybcPV8Sqy59DwNDY3Jefr64lK/by/da0ViFcuA4DH0vQg5Q6Ze5VimxkfQNSC+Mls/Kx53s7TjP1RhFEDQ=="; }; }; "move-concurrently-1.0.1" = { @@ -7322,13 +7295,13 @@ let sha512 = "nnbWWOkoWyUsTjKrhgD0dcz22mdkSnpYqbEjIm2nhwhuxlSkpywJmBo8h0ZqJdkp73mb90SssHkN4rsRaBAfAA=="; }; }; - "nan-2.14.1" = { + "nan-2.14.2" = { name = "nan"; packageName = "nan"; - version = "2.14.1"; + version = "2.14.2"; src = fetchurl { - url = "https://registry.npmjs.org/nan/-/nan-2.14.1.tgz"; - sha512 = "isWHgVjnFjh2x2yuJ/tj3JbwoHu3UC2dX5G/88Cm24yB6YopVgxvBObDY7n5xW6ExmFhJpSEQqFPvq9zaXc8Jw=="; + url = "https://registry.npmjs.org/nan/-/nan-2.14.2.tgz"; + sha512 = "M2ufzIiINKCuDfBSAUr1vWQ+vuVcA9kqx8JJUsbQi6yf1uGRyb7HfpdfUr5qLXf3B/t8dPvcjhKMmlfnP47EzQ=="; }; }; "nanoid-3.1.12" = { @@ -7430,13 +7403,13 @@ let sha512 = "h/zcD8H9kaDZ9ALUWwlBUDo6TKF8a7qBSCSEGfjTVIYeqsioSKaAX+BN7NgiMGp6iSIXZ3PxgCu8KS3b71YK5Q=="; }; }; - "node-releases-1.1.61" = { + "node-releases-1.1.63" = { name = "node-releases"; packageName = "node-releases"; - version = "1.1.61"; + version = "1.1.63"; src = fetchurl { - url = "https://registry.npmjs.org/node-releases/-/node-releases-1.1.61.tgz"; - sha512 = "DD5vebQLg8jLCOzwupn954fbIiZht05DAZs0k2u8NStSe6h9XdsuIQL8hSRKYiU8WUQRznmSDrKGbv3ObOmC7g=="; + url = "https://registry.npmjs.org/node-releases/-/node-releases-1.1.63.tgz"; + sha512 = "ukW3iCfQaoxJkSPN+iK7KznTeqDGVJatAEuXsJERYHa9tn/KaT5lBdIyxQjLEVTzSkyjJEuQ17/vaEjrOauDkg=="; }; }; "node-watch-0.5.5" = { @@ -8375,13 +8348,13 @@ let sha512 = "3QT8bBJeX/S5zKTTjTCIjRF3If4avAT6kqxcASlTWEtAFCb9NH0OUxNDfgZSWdP5fJnBYCMEWkIFfWeugjzYMg=="; }; }; - "postcss-8.1.1" = { + "postcss-8.1.2" = { name = "postcss"; packageName = "postcss"; - version = "8.1.1"; + version = "8.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/postcss/-/postcss-8.1.1.tgz"; - sha512 = "9DGLSsjooH3kSNjTZUOt2eIj2ZTW0VI2PZ/3My+8TC7KIbH2OKwUlISfDsf63EP4aiRUt3XkEWMWvyJHvJelEg=="; + url = "https://registry.npmjs.org/postcss/-/postcss-8.1.2.tgz"; + sha512 = "mToqEVFq8jF9TFhlIK4HhE34zknFJuNTgqtsr60vUvrWn+9TIYugCwiV1JZRxCuOrej2jjstun1bn4Bc7/1HkA=="; }; }; "postcss-calc-7.0.5" = { @@ -8456,13 +8429,13 @@ let sha512 = "9SiofaZ9CWpQWxOwRh1b/r85KD5y7GgvsNt1056k6OYLvWUun0czCvogfJgylC22uJTwW1KzY3Gz65NZRlvoiQ=="; }; }; - "postcss-loader-4.0.3" = { + "postcss-loader-4.0.4" = { name = "postcss-loader"; packageName = "postcss-loader"; - version = "4.0.3"; + version = "4.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-loader/-/postcss-loader-4.0.3.tgz"; - sha512 = "jHboC/AOnJLPu8/974hODCJ/rNAa2YhhJOclUeuRlAmFpKmEcBY6az8y1ejHyYc2LThzPl8qPRekh2Yz3CiRKA=="; + url = "https://registry.npmjs.org/postcss-loader/-/postcss-loader-4.0.4.tgz"; + sha512 = "pntA9zIR14drQo84yGTjQJg1m7T0DkXR4vXYHBngiRZdJtEeCrojL6lOpqUanMzG375lIJbT4Yug85zC/AJWGw=="; }; }; "postcss-merge-longhand-4.0.11" = { @@ -8753,13 +8726,13 @@ let sha512 = "s1Iam6Gwz3JI5Hweaz4GoCD1WUNUIyzePFy5+Js2hjwGVt2Z79wNN+ZKOZ2vB6C+Xs6njyB84Z1IthQg8d9LxA=="; }; }; - "pretty-error-2.1.1" = { + "pretty-error-2.1.2" = { name = "pretty-error"; packageName = "pretty-error"; - version = "2.1.1"; + version = "2.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/pretty-error/-/pretty-error-2.1.1.tgz"; - sha1 = "5f4f87c8f91e5ae3f3ba87ab4cf5e03b1a17f1a3"; + url = "https://registry.npmjs.org/pretty-error/-/pretty-error-2.1.2.tgz"; + sha512 = "EY5oDzmsX5wvuynAByrmY0P0hcp+QpnAKbJng2A2MPjVKXCxrDSUkzghVJ4ZGPIv+JC4gX8fPUWscC0RtjsWGw=="; }; }; "pretty-format-25.5.0" = { @@ -9167,13 +9140,13 @@ let sha512 = "ZOsfTGkjO2kqeR5Mzr5RYDbTGYneSkdNKX2fOX2P5jF7vMrd/GNnIAUtDldeHHumHUCQ3V05YfWUdxMPAsRu9Q=="; }; }; - "readdirp-3.4.0" = { + "readdirp-3.5.0" = { name = "readdirp"; packageName = "readdirp"; - version = "3.4.0"; + version = "3.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/readdirp/-/readdirp-3.4.0.tgz"; - sha512 = "0xe001vZBnJEK+uKcj8qOhyAKPzIT+gStxWr3LCB0DwcXR5NZJ3IaC+yGnHCYzB/S7ov3m3EEbZI2zeNvX+hGQ=="; + url = "https://registry.npmjs.org/readdirp/-/readdirp-3.5.0.tgz"; + sha512 = "cMhu7c/8rdhkHXWsY+osBhfSy0JikwpHK/5+imo+LpeasTF8ouErHrlYkwT0++njiyuDvc7OFY5T3ukvZ8qmFQ=="; }; }; "recursive-readdir-2.2.2" = { @@ -9329,13 +9302,13 @@ let sha1 = "c24bce2a283adad5bc3f58e0d48249b92379d8ef"; }; }; - "renderkid-2.0.3" = { + "renderkid-2.0.4" = { name = "renderkid"; packageName = "renderkid"; - version = "2.0.3"; + version = "2.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/renderkid/-/renderkid-2.0.3.tgz"; - sha512 = "z8CLQp7EZBPCwCnncgf9C4XAi3WR0dv+uWu/PjIyhhAb5d6IJ/QZqlHFprHeKT+59//V6BNUsLbvN8+2LarxGA=="; + url = "https://registry.npmjs.org/renderkid/-/renderkid-2.0.4.tgz"; + sha512 = "K2eXrSOJdq+HuKzlcjOlGoOarUu5SDguDEhE7+Ah4zuOWL40j8A/oHvLlLob9PSTNvVnBd+/q0Er1QfpEuem5g=="; }; }; "repeat-element-1.1.3" = { @@ -9716,6 +9689,15 @@ let sha512 = "SHiNtMOUGWBQJwzISiVYKu82GiV4QYGePp3odlY1tuKO7gPtphAT5R/py0fA6xtbgLL/RvtJZnU9b8s0F1q0Xg=="; }; }; + "schema-utils-3.0.0" = { + name = "schema-utils"; + packageName = "schema-utils"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/schema-utils/-/schema-utils-3.0.0.tgz"; + sha512 = "6D82/xSzO094ajanoOSbe4YvXWMfn2A//8Y1+MUqFAJul5Bs+yn36xbK9OtNDcRVSBJ9jjeoXftM6CfztsjOAA=="; + }; + }; "select-hose-2.0.0" = { name = "select-hose"; packageName = "select-hose"; @@ -10877,6 +10859,15 @@ let sha1 = "61dbc2d53b69ff6091a12a168fd7d433107e40f1"; }; }; + "ts-debounce-2.0.1" = { + name = "ts-debounce"; + packageName = "ts-debounce"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/ts-debounce/-/ts-debounce-2.0.1.tgz"; + sha512 = "+TztZrH7GnAD5CKxUohIAqIVHLrtivsYT7tZCLeRTCaBMSsfgYwprhA00kB/m0ezvYheOXJQqPfarAvgoayb7A=="; + }; + }; "ts-jest-26.4.1" = { name = "ts-jest"; packageName = "ts-jest"; @@ -10886,22 +10877,22 @@ let sha512 = "F4aFq01aS6mnAAa0DljNmKr/Kk9y4HVZ1m6/rtJ0ED56cuxINGq3Q9eVAh+z5vcYKe5qnTMvv90vE8vUMFxomg=="; }; }; - "ts-union-2.2.1" = { + "ts-union-2.3.0" = { name = "ts-union"; packageName = "ts-union"; - version = "2.2.1"; + version = "2.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/ts-union/-/ts-union-2.2.1.tgz"; - sha512 = "GLHuuu+N+n3mHY8/XzHUbuXf64Xy2nzYUa1/8rNCtkP6pD3mTiSM5OIyxV81ecT33S3i7lbVWdvCtyFmS8rplw=="; + url = "https://registry.npmjs.org/ts-union/-/ts-union-2.3.0.tgz"; + sha512 = "OP+W9WoYvGlOMjc90D6nYz60jU1zQlXAg3VBtuSoMDejY94PaORkya9HtHjaaqqwA4I5/hN38fmKK0nSWj7jPg=="; }; }; - "tslib-1.13.0" = { + "tslib-1.14.1" = { name = "tslib"; packageName = "tslib"; - version = "1.13.0"; + version = "1.14.1"; src = fetchurl { - url = "https://registry.npmjs.org/tslib/-/tslib-1.13.0.tgz"; - sha512 = "i/6DQjL8Xf3be4K/E6Wgpekn5Qasl1usyw++dAA35Ue5orEn65VIxOA+YvNNl9HV3qv70T7CNwjODHZrLwvd1Q=="; + url = "https://registry.npmjs.org/tslib/-/tslib-1.14.1.tgz"; + sha512 = "Xni35NKzjgMrwevysHTCArtLDpPvye8zV/0E4EyYn43P7/7qvQwPh9BGkHewbMulVntbigmcT7rdX3BNo9wRJg=="; }; }; "tsyringe-4.3.0" = { @@ -11183,13 +11174,13 @@ let sha1 = "3838e97cfc60521eb73c525a8e55bfdd9e2e28f1"; }; }; - "url-loader-4.1.0" = { + "url-loader-4.1.1" = { name = "url-loader"; packageName = "url-loader"; - version = "4.1.0"; + version = "4.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/url-loader/-/url-loader-4.1.0.tgz"; - sha512 = "IzgAAIC8wRrg6NYkFIJY09vtktQcsvU8V6HhtQj9PTefbYImzLB1hufqo4m+RyM5N3mLx5BqJKccgxJS+W3kqw=="; + url = "https://registry.npmjs.org/url-loader/-/url-loader-4.1.1.tgz"; + sha512 = "3BTV812+AVHHOJQO8O5MkWgZ5aosP7GnROJwvzLS9hWDj00lZ6Z0wNak423Lp9PBZN05N+Jk/N5Si8jRAlGyWA=="; }; }; "url-parse-1.4.7" = { @@ -11939,13 +11930,13 @@ let sha512 = "o50j0JeToy/4K6OZcaQmW6lyXXKhq7csREXcDwk2omFPJEwUNOVtJKvmDr9EI1fAJZUyZcRF7kxGBWmRXudrCQ=="; }; }; - "yargs-parser-20.2.1" = { + "yargs-parser-20.2.3" = { name = "yargs-parser"; packageName = "yargs-parser"; - version = "20.2.1"; + version = "20.2.3"; src = fetchurl { - url = "https://registry.npmjs.org/yargs-parser/-/yargs-parser-20.2.1.tgz"; - sha512 = "yYsjuSkjbLMBp16eaOt7/siKTjNVjMm3SoJnIg3sEh/JsvqVVDyjRKmaJV4cl+lNIgq6QEco2i3gDebJl7/vLA=="; + url = "https://registry.npmjs.org/yargs-parser/-/yargs-parser-20.2.3.tgz"; + sha512 = "emOFRT9WVHw03QSvN5qor9QQT9+sw5vwxfYweivSMHTcAXPefwVae2FjO7JJjj8hCE4CzPOPeFM83VwT29HCww=="; }; }; "yargs-parser-4.2.1" = { @@ -11979,7 +11970,7 @@ in }; dependencies = [ sources."accepts-1.3.7" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."array-flatten-1.1.1" sources."asn1-0.2.4" sources."assert-plus-1.0.0" @@ -12165,7 +12156,7 @@ in }; dependencies = [ sources."abbrev-1.1.1" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-regex-4.1.0" sources."ansi-styles-3.2.1" sources."anymatch-3.1.1" @@ -12290,7 +12281,7 @@ in sources."minipass-2.9.0" sources."minizlib-1.3.3" sources."mkdirp-0.5.5" - sources."moment-2.29.0" + sources."moment-2.29.1" sources."murmur-hash-js-1.0.0" sources."mustache-3.2.1" sources."nice-try-1.0.5" @@ -12430,7 +12421,7 @@ in ]; }) sources."chalk-3.0.0" - sources."chokidar-3.4.2" + sources."chokidar-3.4.3" sources."clone-response-1.0.2" sources."color-convert-2.0.1" sources."color-name-1.1.4" @@ -12518,7 +12509,7 @@ in sources."range-parser-1.2.1" sources."raw-body-2.4.0" sources."rc-1.2.8" - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."registry-auth-token-4.2.0" sources."registry-url-5.1.0" sources."responselike-1.0.2" @@ -12570,17 +12561,17 @@ in "@elm-tooling/elm-language-server" = nodeEnv.buildNodePackage { name = "_at_elm-tooling_slash_elm-language-server"; packageName = "@elm-tooling/elm-language-server"; - version = "1.12.0"; + version = "1.13.1"; src = fetchurl { - url = "https://registry.npmjs.org/@elm-tooling/elm-language-server/-/elm-language-server-1.12.0.tgz"; - sha512 = "x2Yj/lTUyohViOpRzAh/BzWCsInNCYMDERLVGehX7c5g4DhFLwlT6CSqmQ5LU2twIZW7KEKgCvoQTQ1eZ/ZtTQ=="; + url = "https://registry.npmjs.org/@elm-tooling/elm-language-server/-/elm-language-server-1.13.1.tgz"; + sha512 = "uE80GpQYlec/kJfjZD1LNByhBGpP8XnxIFB5hsCBAK0leGPSfaaqqEQPGZBwiRfssnnIDN7j081txZy0Y3u1Uw=="; }; dependencies = [ sources."@nodelib/fs.scandir-2.1.3" sources."@nodelib/fs.stat-2.0.3" sources."@nodelib/fs.walk-1.2.4" sources."accepts-1.3.7" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."array-flatten-1.1.1" sources."array-union-2.1.0" sources."asn1-0.2.4" @@ -12746,7 +12737,8 @@ in sources."toidentifier-1.0.0" sources."tough-cookie-2.5.0" sources."traverse-chain-0.1.0" - sources."tslib-1.13.0" + sources."ts-debounce-2.0.1" + sources."tslib-1.14.1" sources."tsyringe-4.3.0" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" @@ -12867,7 +12859,7 @@ in sources."pseudomap-1.0.2" sources."pump-3.0.0" sources."range-parser-1.2.1" - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."requires-port-1.0.0" sources."semver-5.7.1" (sources."send-0.17.1" // { @@ -12912,7 +12904,7 @@ in sha512 = "DUzKPNzJb/2ZsPbtHttT5JIKGY1KtT7d9cexSNQI7DppvoEHxZ4nCd5EObv5kjskmC0JkQ5PHmCkIruQsbOdkQ=="; }; dependencies = [ - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-styles-4.3.0" sources."anymatch-3.1.1" sources."asn1-0.2.4" @@ -12932,7 +12924,7 @@ in sources."caseless-0.12.0" sources."chainsaw-0.1.0" sources."chalk-3.0.0" - sources."chokidar-3.4.2" + sources."chokidar-3.4.3" sources."chownr-1.1.4" sources."color-convert-2.0.1" sources."color-name-1.1.4" @@ -12998,7 +12990,7 @@ in sources."psl-1.8.0" sources."punycode-2.1.1" sources."qs-6.5.2" - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."request-2.88.2" sources."request-promise-4.2.6" sources."request-promise-core-1.1.4" @@ -13053,7 +13045,7 @@ in sources."@types/cacheable-request-6.0.1" sources."@types/http-cache-semantics-4.0.0" sources."@types/keyv-3.1.1" - sources."@types/node-14.11.3" + sources."@types/node-14.11.10" sources."@types/responselike-1.0.0" sources."cacheable-lookup-2.0.1" sources."cacheable-request-7.0.1" @@ -13127,7 +13119,7 @@ in sha512 = "dAOv+U9hXZ0IRGx19mkpCAdf5rUwoJWlzFmcR2gvOzE/QjZUSlPh3e0IIDAfGUuEF8DjfE5CTe31fNtIkkd2rQ=="; }; dependencies = [ - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-regex-4.1.0" sources."ansi-styles-3.2.1" sources."anymatch-3.1.1" @@ -13360,63 +13352,59 @@ in create-elm-app = nodeEnv.buildNodePackage { name = "create-elm-app"; packageName = "create-elm-app"; - version = "5.2.1"; + version = "5.9.0"; src = fetchurl { - url = "https://registry.npmjs.org/create-elm-app/-/create-elm-app-5.2.1.tgz"; - sha512 = "gIobIWzQtCcKQH4dcCFzOJebm00j5Yha3s3XiwH0hp5auogbjS9TTLJKFUChF8j6vMlxIHxpCpxTmtPlrcZyvQ=="; + url = "https://registry.npmjs.org/create-elm-app/-/create-elm-app-5.9.0.tgz"; + sha512 = "aZR8Jxb5FUyY8G+eV4Tn7CXMLo00owwEhQ0ugJVR+QgHS3wMtbMhGPtZLIPlm471XsUwncmGDNbL/Oy9MkaclQ=="; }; dependencies = [ - sources."@babel/cli-7.11.6" + sources."@babel/cli-7.12.1" sources."@babel/code-frame-7.10.4" - sources."@babel/compat-data-7.11.0" - (sources."@babel/core-7.11.6" // { - dependencies = [ - sources."debug-4.3.0" - sources."ms-2.1.2" - ]; - }) - sources."@babel/generator-7.11.6" + sources."@babel/compat-data-7.12.1" + sources."@babel/core-7.12.3" + sources."@babel/generator-7.12.1" sources."@babel/helper-annotate-as-pure-7.10.4" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.10.4" - sources."@babel/helper-compilation-targets-7.10.4" - sources."@babel/helper-create-class-features-plugin-7.10.5" - sources."@babel/helper-create-regexp-features-plugin-7.10.4" + sources."@babel/helper-compilation-targets-7.12.1" + sources."@babel/helper-create-class-features-plugin-7.12.1" + sources."@babel/helper-create-regexp-features-plugin-7.12.1" sources."@babel/helper-define-map-7.10.5" - sources."@babel/helper-explode-assignable-expression-7.11.4" + sources."@babel/helper-explode-assignable-expression-7.12.1" sources."@babel/helper-function-name-7.10.4" sources."@babel/helper-get-function-arity-7.10.4" sources."@babel/helper-hoist-variables-7.10.4" - sources."@babel/helper-member-expression-to-functions-7.11.0" - sources."@babel/helper-module-imports-7.10.4" - sources."@babel/helper-module-transforms-7.11.0" + sources."@babel/helper-member-expression-to-functions-7.12.1" + sources."@babel/helper-module-imports-7.12.1" + sources."@babel/helper-module-transforms-7.12.1" sources."@babel/helper-optimise-call-expression-7.10.4" sources."@babel/helper-plugin-utils-7.10.4" sources."@babel/helper-regex-7.10.5" - sources."@babel/helper-remap-async-to-generator-7.11.4" - sources."@babel/helper-replace-supers-7.10.4" - sources."@babel/helper-simple-access-7.10.4" - sources."@babel/helper-skip-transparent-expression-wrappers-7.11.0" + sources."@babel/helper-remap-async-to-generator-7.12.1" + sources."@babel/helper-replace-supers-7.12.1" + sources."@babel/helper-simple-access-7.12.1" + sources."@babel/helper-skip-transparent-expression-wrappers-7.12.1" sources."@babel/helper-split-export-declaration-7.11.0" sources."@babel/helper-validator-identifier-7.10.4" - sources."@babel/helper-wrap-function-7.10.4" - sources."@babel/helpers-7.10.4" + sources."@babel/helper-validator-option-7.12.1" + sources."@babel/helper-wrap-function-7.12.3" + sources."@babel/helpers-7.12.1" sources."@babel/highlight-7.10.4" - sources."@babel/parser-7.11.5" - sources."@babel/plugin-proposal-async-generator-functions-7.10.5" - sources."@babel/plugin-proposal-class-properties-7.10.4" - sources."@babel/plugin-proposal-dynamic-import-7.10.4" - sources."@babel/plugin-proposal-export-namespace-from-7.10.4" - sources."@babel/plugin-proposal-json-strings-7.10.4" - sources."@babel/plugin-proposal-logical-assignment-operators-7.11.0" - sources."@babel/plugin-proposal-nullish-coalescing-operator-7.10.4" - sources."@babel/plugin-proposal-numeric-separator-7.10.4" - sources."@babel/plugin-proposal-object-rest-spread-7.11.0" - sources."@babel/plugin-proposal-optional-catch-binding-7.10.4" - sources."@babel/plugin-proposal-optional-chaining-7.11.0" - sources."@babel/plugin-proposal-private-methods-7.10.4" - sources."@babel/plugin-proposal-unicode-property-regex-7.10.4" + sources."@babel/parser-7.12.3" + sources."@babel/plugin-proposal-async-generator-functions-7.12.1" + sources."@babel/plugin-proposal-class-properties-7.12.1" + sources."@babel/plugin-proposal-dynamic-import-7.12.1" + sources."@babel/plugin-proposal-export-namespace-from-7.12.1" + sources."@babel/plugin-proposal-json-strings-7.12.1" + sources."@babel/plugin-proposal-logical-assignment-operators-7.12.1" + sources."@babel/plugin-proposal-nullish-coalescing-operator-7.12.1" + sources."@babel/plugin-proposal-numeric-separator-7.12.1" + sources."@babel/plugin-proposal-object-rest-spread-7.12.1" + sources."@babel/plugin-proposal-optional-catch-binding-7.12.1" + sources."@babel/plugin-proposal-optional-chaining-7.12.1" + sources."@babel/plugin-proposal-private-methods-7.12.1" + sources."@babel/plugin-proposal-unicode-property-regex-7.12.1" sources."@babel/plugin-syntax-async-generators-7.8.4" - sources."@babel/plugin-syntax-class-properties-7.10.4" + sources."@babel/plugin-syntax-class-properties-7.12.1" sources."@babel/plugin-syntax-dynamic-import-7.8.3" sources."@babel/plugin-syntax-export-namespace-from-7.8.3" sources."@babel/plugin-syntax-json-strings-7.8.3" @@ -13426,51 +13414,46 @@ in sources."@babel/plugin-syntax-object-rest-spread-7.8.3" sources."@babel/plugin-syntax-optional-catch-binding-7.8.3" sources."@babel/plugin-syntax-optional-chaining-7.8.3" - sources."@babel/plugin-syntax-top-level-await-7.10.4" - sources."@babel/plugin-transform-arrow-functions-7.10.4" - sources."@babel/plugin-transform-async-to-generator-7.10.4" - sources."@babel/plugin-transform-block-scoped-functions-7.10.4" - sources."@babel/plugin-transform-block-scoping-7.11.1" - sources."@babel/plugin-transform-classes-7.10.4" - sources."@babel/plugin-transform-computed-properties-7.10.4" - sources."@babel/plugin-transform-destructuring-7.10.4" - sources."@babel/plugin-transform-dotall-regex-7.10.4" - sources."@babel/plugin-transform-duplicate-keys-7.10.4" - sources."@babel/plugin-transform-exponentiation-operator-7.10.4" - sources."@babel/plugin-transform-for-of-7.10.4" - sources."@babel/plugin-transform-function-name-7.10.4" - sources."@babel/plugin-transform-literals-7.10.4" - sources."@babel/plugin-transform-member-expression-literals-7.10.4" - sources."@babel/plugin-transform-modules-amd-7.10.5" - sources."@babel/plugin-transform-modules-commonjs-7.10.4" - sources."@babel/plugin-transform-modules-systemjs-7.10.5" - sources."@babel/plugin-transform-modules-umd-7.10.4" - sources."@babel/plugin-transform-named-capturing-groups-regex-7.10.4" - sources."@babel/plugin-transform-new-target-7.10.4" - sources."@babel/plugin-transform-object-super-7.10.4" - sources."@babel/plugin-transform-parameters-7.10.5" - sources."@babel/plugin-transform-property-literals-7.10.4" - sources."@babel/plugin-transform-regenerator-7.10.4" - sources."@babel/plugin-transform-reserved-words-7.10.4" - sources."@babel/plugin-transform-runtime-7.11.5" - sources."@babel/plugin-transform-shorthand-properties-7.10.4" - sources."@babel/plugin-transform-spread-7.11.0" - sources."@babel/plugin-transform-sticky-regex-7.10.4" - sources."@babel/plugin-transform-template-literals-7.10.5" - sources."@babel/plugin-transform-typeof-symbol-7.10.4" - sources."@babel/plugin-transform-unicode-escapes-7.10.4" - sources."@babel/plugin-transform-unicode-regex-7.10.4" - sources."@babel/preset-env-7.11.5" + sources."@babel/plugin-syntax-top-level-await-7.12.1" + sources."@babel/plugin-transform-arrow-functions-7.12.1" + sources."@babel/plugin-transform-async-to-generator-7.12.1" + sources."@babel/plugin-transform-block-scoped-functions-7.12.1" + sources."@babel/plugin-transform-block-scoping-7.12.1" + sources."@babel/plugin-transform-classes-7.12.1" + sources."@babel/plugin-transform-computed-properties-7.12.1" + sources."@babel/plugin-transform-destructuring-7.12.1" + sources."@babel/plugin-transform-dotall-regex-7.12.1" + sources."@babel/plugin-transform-duplicate-keys-7.12.1" + sources."@babel/plugin-transform-exponentiation-operator-7.12.1" + sources."@babel/plugin-transform-for-of-7.12.1" + sources."@babel/plugin-transform-function-name-7.12.1" + sources."@babel/plugin-transform-literals-7.12.1" + sources."@babel/plugin-transform-member-expression-literals-7.12.1" + sources."@babel/plugin-transform-modules-amd-7.12.1" + sources."@babel/plugin-transform-modules-commonjs-7.12.1" + sources."@babel/plugin-transform-modules-systemjs-7.12.1" + sources."@babel/plugin-transform-modules-umd-7.12.1" + sources."@babel/plugin-transform-named-capturing-groups-regex-7.12.1" + sources."@babel/plugin-transform-new-target-7.12.1" + sources."@babel/plugin-transform-object-super-7.12.1" + sources."@babel/plugin-transform-parameters-7.12.1" + sources."@babel/plugin-transform-property-literals-7.12.1" + sources."@babel/plugin-transform-regenerator-7.12.1" + sources."@babel/plugin-transform-reserved-words-7.12.1" + sources."@babel/plugin-transform-runtime-7.12.1" + sources."@babel/plugin-transform-shorthand-properties-7.12.1" + sources."@babel/plugin-transform-spread-7.12.1" + sources."@babel/plugin-transform-sticky-regex-7.12.1" + sources."@babel/plugin-transform-template-literals-7.12.1" + sources."@babel/plugin-transform-typeof-symbol-7.12.1" + sources."@babel/plugin-transform-unicode-escapes-7.12.1" + sources."@babel/plugin-transform-unicode-regex-7.12.1" + sources."@babel/preset-env-7.12.1" sources."@babel/preset-modules-0.1.4" - sources."@babel/runtime-7.11.2" + sources."@babel/runtime-7.12.1" sources."@babel/template-7.10.4" - (sources."@babel/traverse-7.11.5" // { - dependencies = [ - sources."debug-4.3.0" - sources."ms-2.1.2" - ]; - }) - sources."@babel/types-7.11.5" + sources."@babel/traverse-7.12.1" + sources."@babel/types-7.12.1" sources."@hapi/address-2.1.4" sources."@hapi/bourne-1.3.2" sources."@hapi/hoek-8.5.1" @@ -13484,7 +13467,7 @@ in sources."@types/http-proxy-1.17.4" sources."@types/json-schema-7.0.6" sources."@types/minimatch-3.0.3" - sources."@types/node-14.11.3" + sources."@types/node-14.11.10" sources."@types/parse-json-4.0.0" sources."@types/q-1.5.4" sources."@types/source-list-map-0.1.2" @@ -13527,7 +13510,7 @@ in sources."accepts-1.3.7" sources."acorn-6.4.2" sources."address-1.0.3" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ajv-errors-1.0.1" sources."ajv-keywords-3.5.2" sources."alphanum-sort-1.0.2" @@ -13536,11 +13519,7 @@ in sources."ansi-html-0.0.7" sources."ansi-regex-2.1.1" sources."ansi-styles-3.2.1" - (sources."anymatch-2.0.0" // { - dependencies = [ - sources."normalize-path-2.1.1" - ]; - }) + sources."anymatch-3.1.1" sources."aproba-1.2.0" sources."argparse-1.0.10" sources."arr-diff-4.0.0" @@ -13596,6 +13575,7 @@ in (sources."base-0.11.2" // { dependencies = [ sources."define-property-1.0.0" + sources."isobject-3.0.1" ]; }) sources."base64-js-1.3.1" @@ -13603,7 +13583,7 @@ in sources."bcrypt-pbkdf-1.0.2" sources."big.js-5.2.2" sources."binary-0.3.0" - sources."binary-extensions-1.13.1" + sources."binary-extensions-2.1.0" sources."bindings-1.5.0" sources."binwrap-0.2.2" sources."bluebird-3.7.2" @@ -13611,6 +13591,8 @@ in (sources."body-parser-1.19.0" // { dependencies = [ sources."bytes-3.1.0" + sources."debug-2.6.9" + sources."ms-2.0.0" sources."qs-6.7.0" ]; }) @@ -13621,12 +13603,7 @@ in }) sources."boolbase-1.0.0" sources."brace-expansion-1.1.11" - (sources."braces-2.3.2" // { - dependencies = [ - sources."extend-shallow-2.0.1" - sources."is-extendable-0.1.1" - ]; - }) + sources."braces-3.0.2" sources."brorand-1.1.0" sources."browserify-aes-1.2.0" sources."browserify-cipher-1.0.1" @@ -13652,7 +13629,11 @@ in sources."builtin-status-codes-3.0.0" sources."bytes-3.0.0" sources."cacache-12.0.4" - sources."cache-base-1.0.1" + (sources."cache-base-1.0.1" // { + dependencies = [ + sources."isobject-3.0.1" + ]; + }) sources."call-me-maybe-1.0.1" sources."caller-callsite-2.0.0" sources."caller-path-2.0.0" @@ -13660,7 +13641,7 @@ in sources."camel-case-4.1.1" sources."camelcase-5.3.1" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001143" + sources."caniuse-lite-1.0.30001148" sources."case-sensitive-paths-webpack-plugin-2.3.0" sources."caseless-0.12.0" sources."chainsaw-0.1.0" @@ -13670,7 +13651,11 @@ in ]; }) sources."chardet-0.7.0" - sources."chokidar-2.1.8" + (sources."chokidar-3.4.3" // { + dependencies = [ + sources."glob-parent-5.1.1" + ]; + }) sources."chownr-1.1.4" sources."chrome-trace-event-1.0.2" sources."cipher-base-1.0.4" @@ -13688,6 +13673,7 @@ in ]; }) sources."is-descriptor-0.1.6" + sources."isobject-3.0.1" sources."kind-of-5.1.0" ]; }) @@ -13707,10 +13693,10 @@ in sources."coa-2.0.2" sources."code-point-at-1.1.0" sources."collection-visit-1.0.0" - sources."color-3.1.2" + sources."color-3.1.3" sources."color-convert-1.9.3" sources."color-name-1.1.3" - sources."color-string-1.5.3" + sources."color-string-1.5.4" sources."colorette-1.2.1" sources."colors-1.0.3" sources."combined-stream-1.0.8" @@ -13719,7 +13705,12 @@ in sources."commondir-1.0.1" sources."component-emitter-1.3.0" sources."compressible-2.0.18" - sources."compression-1.7.4" + (sources."compression-1.7.4" // { + dependencies = [ + sources."debug-2.6.9" + sources."ms-2.0.0" + ]; + }) sources."concat-map-0.0.1" sources."concat-stream-1.6.2" sources."connect-history-api-fallback-1.6.0" @@ -13758,7 +13749,7 @@ in sources."css-declaration-sorter-4.0.1" (sources."css-loader-4.3.0" // { dependencies = [ - sources."camelcase-6.0.0" + sources."camelcase-6.1.0" sources."loader-utils-2.0.0" sources."semver-7.3.2" ]; @@ -13788,13 +13779,17 @@ in sources."cycle-1.0.3" sources."cyclist-1.0.1" sources."dashdash-1.14.1" - sources."debug-2.6.9" + sources."debug-4.3.0" sources."decamelize-1.2.0" sources."decode-uri-component-0.2.0" sources."deep-equal-0.2.2" sources."default-gateway-4.2.0" sources."define-properties-1.1.3" - sources."define-property-2.0.2" + (sources."define-property-2.0.2" // { + dependencies = [ + sources."isobject-3.0.1" + ]; + }) (sources."del-4.1.1" // { dependencies = [ (sources."globby-6.1.0" // { @@ -13809,7 +13804,12 @@ in sources."des.js-1.0.1" sources."destroy-1.0.4" sources."detect-node-2.0.4" - sources."detect-port-alt-1.1.6" + (sources."detect-port-alt-1.1.6" // { + dependencies = [ + sources."debug-2.6.9" + sources."ms-2.0.0" + ]; + }) (sources."diffie-hellman-5.0.3" // { dependencies = [ sources."bn.js-4.11.9" @@ -13836,7 +13836,7 @@ in sources."duplexify-3.7.1" sources."ecc-jsbn-0.1.2" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.3.576" + sources."electron-to-chromium-1.3.582" (sources."elliptic-6.5.3" // { dependencies = [ sources."bn.js-4.11.9" @@ -13849,23 +13849,12 @@ in (sources."elm-test-0.19.1-revision4" // { dependencies = [ sources."ansi-styles-4.3.0" - sources."anymatch-3.1.1" - sources."binary-extensions-2.1.0" - sources."braces-3.0.2" sources."chalk-3.0.0" - sources."chokidar-3.4.2" sources."color-convert-2.0.1" sources."color-name-1.1.4" - sources."fill-range-7.0.1" sources."fs-extra-8.1.0" - sources."fsevents-2.1.3" - sources."glob-parent-5.1.1" sources."has-flag-4.0.0" - sources."is-binary-path-2.1.0" - sources."is-number-7.0.0" - sources."readdirp-3.4.0" sources."supports-color-7.2.0" - sources."to-regex-range-5.0.1" ]; }) sources."elm-webpack-loader-6.0.1" @@ -13879,12 +13868,12 @@ in sources."memory-fs-0.5.0" ]; }) - sources."entities-2.0.3" + sources."entities-2.1.0" sources."errno-0.1.7" sources."error-ex-1.3.2" sources."es-abstract-1.18.0-next.1" sources."es-to-primitive-1.2.1" - sources."escalade-3.1.0" + sources."escalade-3.1.1" sources."escape-html-1.0.3" sources."escape-string-regexp-2.0.0" sources."eslint-scope-4.0.3" @@ -13912,6 +13901,7 @@ in }) (sources."expand-brackets-2.1.4" // { dependencies = [ + sources."debug-2.6.9" sources."define-property-0.2.5" sources."extend-shallow-2.0.1" (sources."is-accessor-descriptor-0.1.6" // { @@ -13925,31 +13915,57 @@ in ]; }) sources."is-descriptor-0.1.6" - sources."is-extendable-0.1.1" sources."kind-of-5.1.0" + sources."ms-2.0.0" ]; }) sources."expand-tilde-2.0.2" (sources."express-4.17.1" // { dependencies = [ sources."array-flatten-1.1.1" + sources."debug-2.6.9" + sources."ms-2.0.0" sources."qs-6.7.0" ]; }) sources."extend-3.0.2" - sources."extend-shallow-3.0.2" + (sources."extend-shallow-3.0.2" // { + dependencies = [ + sources."is-extendable-1.0.1" + ]; + }) sources."external-editor-3.1.0" (sources."extglob-2.0.4" // { dependencies = [ sources."define-property-1.0.0" sources."extend-shallow-2.0.1" - sources."is-extendable-0.1.1" ]; }) sources."extsprintf-1.3.0" sources."eyes-0.1.8" sources."fast-deep-equal-3.1.3" - sources."fast-glob-2.2.7" + (sources."fast-glob-2.2.7" // { + dependencies = [ + (sources."braces-2.3.2" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + (sources."fill-range-4.0.0" // { + dependencies = [ + sources."extend-shallow-2.0.1" + ]; + }) + (sources."is-number-3.0.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) + sources."isobject-3.0.1" + sources."micromatch-3.1.10" + sources."to-regex-range-2.1.1" + ]; + }) sources."fast-json-stable-stringify-2.1.0" sources."faye-websocket-0.11.3" sources."figgy-pudding-3.5.2" @@ -13958,20 +13974,21 @@ in sources."escape-string-regexp-1.0.5" ]; }) - (sources."file-loader-6.1.0" // { + (sources."file-loader-6.1.1" // { dependencies = [ sources."loader-utils-2.0.0" + sources."schema-utils-3.0.0" ]; }) sources."file-uri-to-path-1.0.0" sources."filesize-3.6.1" - (sources."fill-range-4.0.0" // { + sources."fill-range-7.0.1" + (sources."finalhandler-1.1.2" // { dependencies = [ - sources."extend-shallow-2.0.1" - sources."is-extendable-0.1.1" + sources."debug-2.6.9" + sources."ms-2.0.0" ]; }) - sources."finalhandler-1.1.2" sources."find-cache-dir-2.1.0" sources."find-elm-dependencies-2.0.4" sources."find-up-3.0.0" @@ -13990,7 +14007,7 @@ in sources."fs-readdir-recursive-1.1.0" sources."fs-write-stream-atomic-1.0.10" sources."fs.realpath-1.0.0" - sources."fsevents-1.2.13" + sources."fsevents-2.1.3" sources."function-bind-1.1.1" sources."gensync-1.0.0-beta.1" sources."get-caller-file-1.0.3" @@ -14030,9 +14047,18 @@ in sources."has-1.0.3" sources."has-flag-3.0.0" sources."has-symbols-1.0.1" - sources."has-value-1.0.0" + (sources."has-value-1.0.0" // { + dependencies = [ + sources."isobject-3.0.1" + ]; + }) (sources."has-values-1.0.0" // { dependencies = [ + (sources."is-number-3.0.0" // { + dependencies = [ + sources."kind-of-3.2.2" + ]; + }) sources."kind-of-4.0.0" ]; }) @@ -14069,15 +14095,7 @@ in }) sources."http-parser-js-0.5.2" sources."http-proxy-1.18.1" - (sources."http-proxy-middleware-0.21.0" // { - dependencies = [ - sources."braces-3.0.2" - sources."fill-range-7.0.1" - sources."is-number-7.0.0" - sources."micromatch-4.0.2" - sources."to-regex-range-5.0.1" - ]; - }) + sources."http-proxy-middleware-0.21.0" sources."http-signature-1.2.0" sources."https-browserify-1.0.0" sources."i-0.3.6" @@ -14105,7 +14123,6 @@ in ]; }) sources."internal-ip-4.3.0" - sources."invariant-2.2.4" sources."invert-kv-1.0.0" sources."ip-1.1.5" sources."ip-regex-2.1.0" @@ -14114,7 +14131,7 @@ in sources."is-accessor-descriptor-1.0.0" sources."is-arguments-1.0.4" sources."is-arrayish-0.2.1" - sources."is-binary-path-1.0.1" + sources."is-binary-path-2.1.0" sources."is-buffer-1.1.6" sources."is-callable-1.2.2" sources."is-color-stop-1.1.0" @@ -14122,22 +14139,22 @@ in sources."is-date-object-1.0.2" sources."is-descriptor-1.0.2" sources."is-directory-0.3.1" - sources."is-extendable-1.0.1" + sources."is-extendable-0.1.1" sources."is-extglob-2.1.1" sources."is-fullwidth-code-point-1.0.0" sources."is-glob-4.0.1" sources."is-negative-zero-2.0.0" - (sources."is-number-3.0.0" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) + sources."is-number-7.0.0" sources."is-obj-2.0.0" sources."is-path-cwd-2.2.0" sources."is-path-in-cwd-2.1.0" sources."is-path-inside-2.1.0" sources."is-plain-obj-1.1.0" - sources."is-plain-object-2.0.4" + (sources."is-plain-object-2.0.4" // { + dependencies = [ + sources."isobject-3.0.1" + ]; + }) sources."is-regex-1.1.1" sources."is-regexp-1.0.0" sources."is-resolvable-1.1.0" @@ -14151,7 +14168,7 @@ in sources."is-wsl-1.1.0" sources."isarray-1.0.0" sources."isexe-2.0.0" - sources."isobject-3.0.1" + sources."isobject-2.1.0" sources."isstream-0.1.2" sources."js-tokens-4.0.0" sources."js-yaml-3.14.0" @@ -14173,13 +14190,7 @@ in sources."klona-2.0.4" sources."last-call-webpack-plugin-3.0.0" sources."lcid-1.0.0" - sources."leven-3.1.0" - sources."levenary-1.1.1" - (sources."line-column-1.0.2" // { - dependencies = [ - sources."isobject-2.1.0" - ]; - }) + sources."line-column-1.0.2" sources."lines-and-columns-1.1.6" (sources."load-json-file-1.1.0" // { dependencies = [ @@ -14201,7 +14212,6 @@ in sources."lodash.templatesettings-4.2.0" sources."lodash.uniq-4.5.0" sources."loglevel-1.7.0" - sources."loose-envify-1.4.0" sources."lower-case-2.0.1" sources."lru-cache-5.1.1" sources."make-dir-2.1.0" @@ -14214,7 +14224,7 @@ in sources."merge-descriptors-1.0.1" sources."merge2-1.4.1" sources."methods-1.1.2" - sources."micromatch-3.1.10" + sources."micromatch-4.0.2" (sources."miller-rabin-4.0.1" // { dependencies = [ sources."bn.js-4.11.9" @@ -14224,7 +14234,7 @@ in sources."mime-db-1.44.0" sources."mime-types-2.1.27" sources."mimic-fn-1.2.0" - (sources."mini-css-extract-plugin-0.11.3" // { + (sources."mini-css-extract-plugin-0.12.0" // { dependencies = [ sources."schema-utils-1.0.0" ]; @@ -14236,16 +14246,20 @@ in sources."minipass-2.9.0" sources."minizlib-1.3.3" sources."mississippi-3.0.0" - sources."mixin-deep-1.3.2" + (sources."mixin-deep-1.3.2" // { + dependencies = [ + sources."is-extendable-1.0.1" + ]; + }) sources."mkdirp-0.5.3" sources."move-concurrently-1.0.1" - sources."ms-2.0.0" + sources."ms-2.1.2" sources."multicast-dns-6.2.3" sources."multicast-dns-service-types-1.1.0" sources."murmur-hash-js-1.0.0" sources."mustache-3.2.1" sources."mute-stream-0.0.8" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."nanoid-3.1.12" sources."nanomatch-1.2.13" sources."ncp-1.0.1" @@ -14268,7 +14282,7 @@ in sources."punycode-1.4.1" ]; }) - sources."node-releases-1.1.61" + sources."node-releases-1.1.63" sources."normalize-package-data-2.5.0" sources."normalize-path-3.0.0" sources."normalize-range-0.1.2" @@ -14299,7 +14313,11 @@ in sources."object-inspect-1.8.0" sources."object-is-1.1.3" sources."object-keys-1.1.1" - sources."object-visit-1.0.1" + (sources."object-visit-1.0.1" // { + dependencies = [ + sources."isobject-3.0.1" + ]; + }) sources."object.assign-4.1.1" (sources."object.entries-1.1.2" // { dependencies = [ @@ -14311,7 +14329,11 @@ in sources."es-abstract-1.17.7" ]; }) - sources."object.pick-1.3.0" + (sources."object.pick-1.3.0" // { + dependencies = [ + sources."isobject-3.0.1" + ]; + }) (sources."object.values-1.1.1" // { dependencies = [ sources."es-abstract-1.17.7" @@ -14383,7 +14405,6 @@ in sources."async-2.6.3" sources."debug-3.2.6" sources."mkdirp-0.5.5" - sources."ms-2.1.2" ]; }) sources."posix-character-classes-0.1.1" @@ -14409,7 +14430,7 @@ in sources."postcss-discard-empty-4.0.1" sources."postcss-discard-overridden-4.0.1" sources."postcss-flexbugs-fixes-4.2.1" - (sources."postcss-loader-4.0.3" // { + (sources."postcss-loader-4.0.4" // { dependencies = [ sources."cosmiconfig-7.0.0" sources."import-fresh-3.2.1" @@ -14417,6 +14438,7 @@ in sources."parse-json-5.1.0" sources."path-type-4.0.0" sources."resolve-from-4.0.0" + sources."schema-utils-3.0.0" sources."semver-7.3.2" ]; }) @@ -14509,7 +14531,7 @@ in }) (sources."postcss-safe-parser-5.0.2" // { dependencies = [ - sources."postcss-8.1.1" + sources."postcss-8.1.2" sources."source-map-0.6.1" ]; }) @@ -14523,7 +14545,7 @@ in sources."postcss-value-parser-4.1.0" sources."prepend-http-1.0.4" sources."pretty-bytes-5.4.1" - sources."pretty-error-2.1.1" + sources."pretty-error-2.1.2" sources."process-0.11.10" sources."process-nextick-args-2.0.1" sources."promise-8.1.0" @@ -14571,11 +14593,13 @@ in sources."browserslist-4.1.1" sources."chalk-2.4.1" sources."cross-spawn-6.0.5" + sources."debug-2.6.9" sources."emojis-list-2.1.0" sources."escape-string-regexp-1.0.5" sources."globby-8.0.1" sources."json5-0.5.1" sources."loader-utils-1.1.0" + sources."ms-2.0.0" sources."path-key-2.0.1" sources."pify-3.0.0" sources."react-error-overlay-5.1.6" @@ -14602,7 +14626,7 @@ in ]; }) sources."readable-stream-2.3.7" - sources."readdirp-2.2.1" + sources."readdirp-3.5.0" sources."recursive-readdir-2.2.2" sources."regenerate-1.4.1" sources."regenerate-unicode-properties-8.2.0" @@ -14623,7 +14647,7 @@ in }) sources."relateurl-0.2.7" sources."remove-trailing-separator-1.1.0" - (sources."renderkid-2.0.3" // { + (sources."renderkid-2.0.4" // { dependencies = [ sources."strip-ansi-3.0.1" ]; @@ -14662,14 +14686,21 @@ in sources."semver-5.7.1" (sources."send-0.17.1" // { dependencies = [ + (sources."debug-2.6.9" // { + dependencies = [ + sources."ms-2.0.0" + ]; + }) sources."ms-2.1.1" ]; }) sources."serialize-javascript-4.0.0" (sources."serve-index-1.9.1" // { dependencies = [ + sources."debug-2.6.9" sources."http-errors-1.6.3" sources."inherits-2.0.3" + sources."ms-2.0.0" sources."setprototypeof-1.1.0" ]; }) @@ -14678,7 +14709,6 @@ in (sources."set-value-2.0.1" // { dependencies = [ sources."extend-shallow-2.0.1" - sources."is-extendable-0.1.1" ]; }) sources."setimmediate-1.0.5" @@ -14696,6 +14726,7 @@ in sources."slash-2.0.0" (sources."snapdragon-0.8.2" // { dependencies = [ + sources."debug-2.6.9" sources."define-property-0.2.5" sources."extend-shallow-2.0.1" (sources."is-accessor-descriptor-0.1.6" // { @@ -14709,13 +14740,14 @@ in ]; }) sources."is-descriptor-0.1.6" - sources."is-extendable-0.1.1" sources."kind-of-5.1.0" + sources."ms-2.0.0" ]; }) (sources."snapdragon-node-2.1.1" // { dependencies = [ sources."define-property-1.0.0" + sources."isobject-3.0.1" ]; }) (sources."snapdragon-util-3.0.1" // { @@ -14733,7 +14765,6 @@ in dependencies = [ sources."debug-3.2.6" sources."eventsource-1.0.7" - sources."ms-2.1.2" ]; }) sources."sort-keys-1.1.2" @@ -14750,16 +14781,9 @@ in sources."spdx-exceptions-2.3.0" sources."spdx-expression-parse-3.0.1" sources."spdx-license-ids-3.0.6" - (sources."spdy-4.0.2" // { - dependencies = [ - sources."debug-4.3.0" - sources."ms-2.1.2" - ]; - }) + sources."spdy-4.0.2" (sources."spdy-transport-3.0.0" // { dependencies = [ - sources."debug-4.3.0" - sources."ms-2.1.2" sources."readable-stream-3.6.0" ]; }) @@ -14838,7 +14862,7 @@ in (sources."svgo-1.3.2" // { dependencies = [ sources."css-select-2.1.0" - sources."css-what-3.4.1" + sources."css-what-3.4.2" sources."domutils-1.7.0" ]; }) @@ -14876,11 +14900,11 @@ in ]; }) sources."to-regex-3.0.2" - sources."to-regex-range-2.1.1" + sources."to-regex-range-5.0.1" sources."toidentifier-1.0.0" sources."tough-cookie-2.5.0" sources."traverse-0.3.9" - sources."tslib-1.13.0" + sources."tslib-1.14.1" sources."tty-browserify-0.0.0" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" @@ -14918,11 +14942,7 @@ in sources."unicode-match-property-ecmascript-1.0.4" sources."unicode-match-property-value-ecmascript-1.2.0" sources."unicode-property-aliases-ecmascript-1.1.0" - (sources."union-value-1.0.1" // { - dependencies = [ - sources."is-extendable-0.1.1" - ]; - }) + sources."union-value-1.0.1" sources."uniq-1.0.1" sources."uniqs-2.0.0" sources."unique-filename-1.1.1" @@ -14938,6 +14958,7 @@ in ]; }) sources."has-values-0.1.4" + sources."isobject-3.0.1" ]; }) sources."unzip-stream-0.3.1" @@ -14949,9 +14970,10 @@ in sources."punycode-1.3.2" ]; }) - (sources."url-loader-4.1.0" // { + (sources."url-loader-4.1.1" // { dependencies = [ sources."loader-utils-2.0.0" + sources."schema-utils-3.0.0" ]; }) sources."url-parse-1.4.7" @@ -14972,26 +14994,38 @@ in sources."vendors-1.0.4" sources."verror-1.10.0" sources."vm-browserify-1.1.2" - (sources."watchpack-1.7.4" // { + sources."watchpack-1.7.4" + (sources."watchpack-chokidar2-2.0.0" // { dependencies = [ - sources."anymatch-3.1.1" - sources."binary-extensions-2.1.0" - sources."braces-3.0.2" - sources."chokidar-3.4.2" - sources."fill-range-7.0.1" - sources."fsevents-2.1.3" - sources."glob-parent-5.1.1" - sources."is-binary-path-2.1.0" - sources."is-number-7.0.0" - sources."readdirp-3.4.0" - sources."to-regex-range-5.0.1" + sources."anymatch-2.0.0" + sources."binary-extensions-1.13.1" + sources."braces-2.3.2" + sources."chokidar-2.1.8" + sources."extend-shallow-2.0.1" + sources."fill-range-4.0.0" + sources."fsevents-1.2.13" + sources."is-binary-path-1.0.1" + sources."is-number-3.0.0" + sources."isobject-3.0.1" + sources."kind-of-3.2.2" + sources."micromatch-3.1.10" + sources."normalize-path-2.1.1" + sources."readdirp-2.2.1" + sources."to-regex-range-2.1.1" ]; }) - sources."watchpack-chokidar2-2.0.0" sources."wbuf-1.7.3" (sources."webpack-4.44.2" // { dependencies = [ + sources."braces-2.3.2" + sources."extend-shallow-2.0.1" + sources."fill-range-4.0.0" + sources."is-number-3.0.0" + sources."isobject-3.0.1" + sources."kind-of-3.2.2" + sources."micromatch-3.1.10" sources."schema-utils-1.0.0" + sources."to-regex-range-2.1.1" ]; }) (sources."webpack-dev-middleware-3.7.2" // { @@ -15002,18 +15036,30 @@ in (sources."webpack-dev-server-3.11.0" // { dependencies = [ sources."ansi-regex-4.1.0" + sources."anymatch-2.0.0" + sources."binary-extensions-1.13.1" + sources."braces-2.3.2" + sources."chokidar-2.1.8" (sources."cliui-5.0.0" // { dependencies = [ sources."strip-ansi-5.2.0" ]; }) - sources."debug-4.3.0" + sources."extend-shallow-2.0.1" + sources."fill-range-4.0.0" + sources."fsevents-1.2.13" sources."get-caller-file-2.0.5" sources."http-proxy-middleware-0.19.1" sources."is-absolute-url-3.0.3" + sources."is-binary-path-1.0.1" sources."is-fullwidth-code-point-2.0.0" - sources."ms-2.1.2" + sources."is-number-3.0.0" + sources."isobject-3.0.1" + sources."kind-of-3.2.2" + sources."micromatch-3.1.10" + sources."normalize-path-2.1.1" sources."opn-5.5.0" + sources."readdirp-2.2.1" sources."require-main-filename-2.0.0" sources."schema-utils-1.0.0" sources."semver-6.3.0" @@ -15024,6 +15070,7 @@ in }) sources."strip-ansi-3.0.1" sources."supports-color-6.1.0" + sources."to-regex-range-2.1.1" sources."which-module-2.0.0" (sources."wrap-ansi-5.1.0" // { dependencies = [ @@ -15114,10 +15161,10 @@ in elm-optimize-level-2 = nodeEnv.buildNodePackage { name = "elm-optimize-level-2"; packageName = "elm-optimize-level-2"; - version = "0.1.3"; + version = "0.1.4"; src = fetchurl { - url = "https://registry.npmjs.org/elm-optimize-level-2/-/elm-optimize-level-2-0.1.3.tgz"; - sha512 = "RC5Pz/U6Hf244j95SIxmO33Cc7XZhj4KYKZCFJYGpeb1YGARciBv2AOikm9pBHErtiKtiJwzEWHBoruhpAZnAQ=="; + url = "https://registry.npmjs.org/elm-optimize-level-2/-/elm-optimize-level-2-0.1.4.tgz"; + sha512 = "3pWWNCurTBfjTfRQViECVUaK+ygwp4gQ0KAPKpYYlGl2KmlBy0JqRcgcSXIgqO4C9Tmeb+20J1qZplCaY/2r/w=="; }; dependencies = [ (sources."@jest/types-25.5.0" // { @@ -15129,8 +15176,8 @@ in sources."@types/istanbul-lib-report-3.0.0" sources."@types/istanbul-reports-1.1.2" sources."@types/jest-26.0.14" - sources."@types/node-14.11.3" - sources."@types/yargs-15.0.7" + sources."@types/node-14.11.10" + sources."@types/yargs-15.0.9" sources."@types/yargs-parser-15.0.0" sources."ansi-regex-5.0.0" sources."ansi-styles-4.3.0" @@ -15170,9 +15217,9 @@ in ]; }) sources."jest-get-type-25.2.6" - (sources."jest-util-26.5.0" // { + (sources."jest-util-26.6.0" // { dependencies = [ - sources."@jest/types-26.5.0" + sources."@jest/types-26.6.0" sources."@types/istanbul-reports-3.0.0" ]; }) @@ -15200,11 +15247,11 @@ in sources."temp-0.9.1" sources."to-regex-range-5.0.1" sources."ts-jest-26.4.1" - sources."ts-union-2.2.1" + sources."ts-union-2.3.0" sources."typescript-3.9.7" sources."which-1.3.1" sources."wrappy-1.0.2" - sources."yargs-parser-20.2.1" + sources."yargs-parser-20.2.3" ]; buildInputs = globalBuildInputs; meta = { diff --git a/pkgs/development/compilers/eql/default.nix b/pkgs/development/compilers/eql/default.nix index aac61912689..ce42c102115 100644 --- a/pkgs/development/compilers/eql/default.nix +++ b/pkgs/development/compilers/eql/default.nix @@ -15,6 +15,9 @@ stdenv.mkDerivation rec { postPatch = '' sed -re 's@[(]in-home "gui/.command-history"[)]@(concatenate '"'"'string (ext:getenv "HOME") "/.eql-gui-command-history")@' -i gui/gui.lisp + + # cl_def_c_function was renamed to ecl_def_c_function in ECL 20.4.24. + find . -type f -exec sed -e 's/\scl_def_c_function(/ ecl_def_c_function(/' -i {} \; ''; buildPhase = '' diff --git a/pkgs/development/compilers/flutter/default.nix b/pkgs/development/compilers/flutter/default.nix index 9b9d1f7481d..baab0583fb0 100644 --- a/pkgs/development/compilers/flutter/default.nix +++ b/pkgs/development/compilers/flutter/default.nix @@ -1,6 +1,9 @@ -{ callPackage }: +{ callPackage, dart }: let + dart_stable = dart.override { version = "2.10.0"; }; + dart_beta = dart.override { version = "2.10.0"; }; + dart_dev = dart.override { version = "2.11.0-161.0.dev"; }; mkFlutter = opts: callPackage (import ./flutter.nix opts) { }; getPatches = dir: let files = builtins.attrNames (builtins.readDir dir); @@ -10,25 +13,28 @@ in { stable = mkFlutter rec { pname = "flutter"; channel = "stable"; - version = "1.17.5"; + version = "1.22.0"; filename = "flutter_linux_${version}-${channel}.tar.xz"; - sha256Hash = "0kapja3nh7dfhjbn2np02wghijrjnpzsv4hz10fj54hs8hdx19di"; + sha256Hash = "0ryrx458ss8ryhmspcfrhjvad2pl46bxh1qk5vzwzhxiqdc79vm8"; patches = getPatches ./patches/stable; + dart = dart_stable; }; beta = mkFlutter rec { - pname = "flutter-beta"; + pname = "flutter"; channel = "beta"; - version = "1.20.0-7.2.pre"; + version = "1.22.0-12.3.pre"; filename = "flutter_linux_${version}-${channel}.tar.xz"; - sha256Hash = "0w89ig5vi4spa95mf08r4vvwni7bzzdlyhvr9sy1a35qmf7j9s6f"; - patches = getPatches ./patches/beta; + sha256Hash = "1axzz137z4lgpa09h7bjf52i6dij6a9wmjbha1182db23r09plzh"; + patches = getPatches ./patches/stable; + dart = dart_beta; }; dev = mkFlutter rec { - pname = "flutter-dev"; + pname = "flutter"; channel = "dev"; - version = "1.21.0-1.0.pre"; + version = "1.23.0-7.0.pre"; filename = "flutter_linux_${version}-${channel}.tar.xz"; - sha256Hash = "14rx89jp6ivk3ai7iwbznkr5q445ndh8fppzbxg520kq10s2208r"; - patches = getPatches ./patches/beta; + sha256Hash = "166qb4qbv051bc71yj7c0vrkamhvzz3fp3mz318qzm947mydwjj5"; + patches = getPatches ./patches/dev; + dart = dart_dev; }; } diff --git a/pkgs/development/compilers/flutter/flutter.nix b/pkgs/development/compilers/flutter/flutter.nix index fad2a646a16..7fda2d616f3 100644 --- a/pkgs/development/compilers/flutter/flutter.nix +++ b/pkgs/development/compilers/flutter/flutter.nix @@ -1,5 +1,5 @@ -{ channel, pname, version, sha256Hash, patches -, filename ? "flutter_linux_v${version}-${channel}.tar.xz" }: +{ channel, pname, version, sha256Hash, patches, dart +, filename ? "flutter_linux_${version}-${channel}.tar.xz"}: { bash, buildFHSUserEnv, cacert, coreutils, git, makeWrapper, runCommand, stdenv , fetchurl, alsaLib, dbus, expat, libpulseaudio, libuuid, libX11, libxcb @@ -72,6 +72,7 @@ let with pkgs; [ bash curl + dart git unzip which @@ -110,8 +111,7 @@ in runCommand drvName { allowSubstitutes = false; passthru = { unwrapped = flutter; }; meta = with stdenv.lib; { - description = - "Flutter is Google's SDK for building mobile, web and desktop with Dart."; + description = "Flutter is Google's SDK for building mobile, web and desktop with Dart"; longDescription = '' Flutter is Google’s UI toolkit for building beautiful, natively compiled applications for mobile, web, and desktop from a single codebase. @@ -119,11 +119,15 @@ in runCommand drvName { homepage = "https://flutter.dev"; license = licenses.bsd3; platforms = [ "x86_64-linux" ]; - maintainers = with maintainers; [ babariviere ]; + maintainers = with maintainers; [ babariviere ericdallo ]; }; } '' mkdir -p $out/bin echo -n "$startScript" > $out/bin/${pname} chmod +x $out/bin/${pname} + + mkdir -p $out/bin/cache/dart-sdk/ + cp -r ${dart}/* $out/bin/cache/dart-sdk/ + ln $out/bin/cache/dart-sdk/bin/dart $out/bin/dart '' diff --git a/pkgs/development/compilers/flutter/patches/beta/disable-auto-update.patch b/pkgs/development/compilers/flutter/patches/dev/disable-auto-update.patch similarity index 88% rename from pkgs/development/compilers/flutter/patches/beta/disable-auto-update.patch rename to pkgs/development/compilers/flutter/patches/dev/disable-auto-update.patch index cd01577cc10..f9ac00d1d32 100644 --- a/pkgs/development/compilers/flutter/patches/beta/disable-auto-update.patch +++ b/pkgs/development/compilers/flutter/patches/dev/disable-auto-update.patch @@ -1,8 +1,8 @@ diff --git a/bin/internal/shared.sh b/bin/internal/shared.sh -index 702bd9ed5..4d4dc94c6 100755 +index 22efe87443..c6954575c5 100644 --- a/bin/internal/shared.sh +++ b/bin/internal/shared.sh -@@ -204,8 +204,6 @@ function shared::execute() { +@@ -212,8 +212,6 @@ function shared::execute() { # FLUTTER_TOOL_ARGS="--enable-asserts $FLUTTER_TOOL_ARGS" # FLUTTER_TOOL_ARGS="$FLUTTER_TOOL_ARGS --observe=65432" @@ -12,10 +12,10 @@ index 702bd9ed5..4d4dc94c6 100755 case "$BIN_NAME" in flutter*) diff --git a/packages/flutter_tools/lib/src/runner/flutter_command_runner.dart b/packages/flutter_tools/lib/src/runner/flutter_command_runner.dart -index 21be933e1..2ea73c4c0 100644 +index fb1616ba96..b973b3fd58 100644 --- a/packages/flutter_tools/lib/src/runner/flutter_command_runner.dart +++ b/packages/flutter_tools/lib/src/runner/flutter_command_runner.dart -@@ -294,13 +294,6 @@ class FlutterCommandRunner extends CommandRunner { +@@ -291,13 +291,6 @@ class FlutterCommandRunner extends CommandRunner { globals.flutterUsage.suppressAnalytics = true; } diff --git a/pkgs/development/compilers/flutter/patches/beta/move-cache.patch b/pkgs/development/compilers/flutter/patches/dev/move-cache.patch similarity index 63% rename from pkgs/development/compilers/flutter/patches/beta/move-cache.patch rename to pkgs/development/compilers/flutter/patches/dev/move-cache.patch index 64950d4476e..eb6ff5cf582 100644 --- a/pkgs/development/compilers/flutter/patches/beta/move-cache.patch +++ b/pkgs/development/compilers/flutter/patches/dev/move-cache.patch @@ -1,21 +1,21 @@ diff --git a/dev/devicelab/lib/framework/runner.dart b/dev/devicelab/lib/framework/runner.dart -index 8e511eefd..fef3cca8b 100644 +index a059a8e992..b664a7070c 100644 --- a/dev/devicelab/lib/framework/runner.dart +++ b/dev/devicelab/lib/framework/runner.dart -@@ -126,7 +126,7 @@ Future cleanupSystem() async { - print('\nTelling Gradle to shut down (JAVA_HOME=$javaHome)'); - final String gradlewBinaryName = Platform.isWindows ? 'gradlew.bat' : 'gradlew'; - final Directory tempDir = Directory.systemTemp.createTempSync('flutter_devicelab_shutdown_gradle.'); -- recursiveCopy(Directory(path.join(flutterDirectory.path, 'bin', 'cache', 'artifacts', 'gradle_wrapper')), tempDir); -+ recursiveCopy(Directory(path.join(globals.fsUtils.homeDirPath, '.cache', 'flutter', 'artifacts', 'gradle_wrapper')), tempDir); - copy(File(path.join(path.join(flutterDirectory.path, 'packages', 'flutter_tools'), 'templates', 'app', 'android.tmpl', 'gradle', 'wrapper', 'gradle-wrapper.properties')), Directory(path.join(tempDir.path, 'gradle', 'wrapper'))); - if (!Platform.isWindows) { - await exec( +@@ -137,7 +137,7 @@ Future cleanupSystem() async { + print('\nTelling Gradle to shut down (JAVA_HOME=$javaHome)'); + final String gradlewBinaryName = Platform.isWindows ? 'gradlew.bat' : 'gradlew'; + final Directory tempDir = Directory.systemTemp.createTempSync('flutter_devicelab_shutdown_gradle.'); +- recursiveCopy(Directory(path.join(flutterDirectory.path, 'bin', 'cache', 'artifacts', 'gradle_wrapper')), tempDir); ++ recursiveCopy(Directory(path.join(globals.fsUtils.homeDirPath, '.cache', 'flutter', 'artifacts', 'gradle_wrapper')), tempDir); + copy(File(path.join(path.join(flutterDirectory.path, 'packages', 'flutter_tools'), 'templates', 'app', 'android.tmpl', 'gradle', 'wrapper', 'gradle-wrapper.properties')), Directory(path.join(tempDir.path, 'gradle', 'wrapper'))); + if (!Platform.isWindows) { + await exec( diff --git a/packages/flutter_tools/lib/src/asset.dart b/packages/flutter_tools/lib/src/asset.dart -index c680de599..480abfb77 100644 +index 36714c5fb4..c0cc049ee1 100644 --- a/packages/flutter_tools/lib/src/asset.dart +++ b/packages/flutter_tools/lib/src/asset.dart -@@ -8,6 +8,7 @@ import 'package:meta/meta.dart'; +@@ -6,6 +6,7 @@ import 'package:meta/meta.dart'; import 'package:package_config/package_config.dart'; import 'package:yaml/yaml.dart'; @@ -23,20 +23,20 @@ index c680de599..480abfb77 100644 import 'base/context.dart'; import 'base/file_system.dart'; import 'base/utils.dart'; -@@ -392,7 +393,7 @@ List<_Asset> _getMaterialAssets(String fontSet) { +@@ -397,7 +398,7 @@ List<_Asset> _getMaterialAssets(String fontSet) { for (final Map font in (family['fonts'] as List).cast>()) { final Uri entryUri = globals.fs.path.toUri(font['asset'] as String); result.add(_Asset( - baseDir: globals.fs.path.join(Cache.flutterRoot, 'bin', 'cache', 'artifacts', 'material_fonts'), -+ baseDir: globals.fs.path.join(globals.fsUtils.homeDirPath, '.cache', 'flutter', 'artifacts', 'material_fonts'), ++ baseDir: globals.fs.path.join(globals.fsUtils.homeDirPath, '.cache', 'flutter', 'artifacts', 'material_fonts'), relativeUri: Uri(path: entryUri.pathSegments.last), entryUri: entryUri, package: null, diff --git a/packages/flutter_tools/lib/src/cache.dart b/packages/flutter_tools/lib/src/cache.dart -index c0946782c..bdbc35cb8 100644 +index aaca036d78..43ff428f8d 100644 --- a/packages/flutter_tools/lib/src/cache.dart +++ b/packages/flutter_tools/lib/src/cache.dart -@@ -202,8 +202,15 @@ class Cache { +@@ -226,8 +226,15 @@ class Cache { return; } assert(_lock == null); @@ -53,7 +53,7 @@ index c0946782c..bdbc35cb8 100644 try { _lock = lockFile.openSync(mode: FileMode.write); } on FileSystemException catch (e) { -@@ -306,7 +313,7 @@ class Cache { +@@ -330,7 +337,7 @@ class Cache { if (_rootOverride != null) { return _fileSystem.directory(_fileSystem.path.join(_rootOverride.path, 'bin', 'cache')); } else { diff --git a/pkgs/development/compilers/flutter/patches/stable/disable-auto-update.patch b/pkgs/development/compilers/flutter/patches/stable/disable-auto-update.patch index c77357ea13c..35ce5b36735 100644 --- a/pkgs/development/compilers/flutter/patches/stable/disable-auto-update.patch +++ b/pkgs/development/compilers/flutter/patches/stable/disable-auto-update.patch @@ -1,24 +1,24 @@ -diff --git a/bin/flutter b/bin/flutter -index cdf974233..1f7de1c1b 100755 ---- a/bin/flutter -+++ b/bin/flutter -@@ -185,8 +185,6 @@ fi - # FLUTTER_TOOL_ARGS="--enable-asserts $FLUTTER_TOOL_ARGS" - # FLUTTER_TOOL_ARGS="$FLUTTER_TOOL_ARGS --observe=65432" +diff --git a/bin/internal/shared.sh b/bin/internal/shared.sh +index 8d613de739..a673466726 100644 +--- a/bin/internal/shared.sh ++++ b/bin/internal/shared.sh +@@ -204,8 +204,6 @@ function shared::execute() { + # FLUTTER_TOOL_ARGS="--enable-asserts $FLUTTER_TOOL_ARGS" + # FLUTTER_TOOL_ARGS="$FLUTTER_TOOL_ARGS --observe=65432" --(upgrade_flutter) 3< "$PROG_NAME" +- upgrade_flutter 7< "$PROG_NAME" - - # FLUTTER_TOOL_ARGS isn't quoted below, because it is meant to be considered as - # separate space-separated args. - "$DART" --packages="$FLUTTER_TOOLS_DIR/.packages" $FLUTTER_TOOL_ARGS "$SNAPSHOT_PATH" "$@" + BIN_NAME="$(basename "$PROG_NAME")" + case "$BIN_NAME" in + flutter*) diff --git a/packages/flutter_tools/lib/src/runner/flutter_command_runner.dart b/packages/flutter_tools/lib/src/runner/flutter_command_runner.dart -index b3e69714f..a9eb76234 100644 +index 8a1a1e29da..778f253358 100644 --- a/packages/flutter_tools/lib/src/runner/flutter_command_runner.dart +++ b/packages/flutter_tools/lib/src/runner/flutter_command_runner.dart -@@ -301,13 +301,6 @@ class FlutterCommandRunner extends CommandRunner { +@@ -293,13 +293,6 @@ class FlutterCommandRunner extends CommandRunner { + globals.flutterUsage.suppressAnalytics = true; } - _checkFlutterCopy(); - try { - await globals.flutterVersion.ensureVersionFile(); - } on FileSystemException catch (e) { diff --git a/pkgs/development/compilers/flutter/patches/stable/move-cache.patch b/pkgs/development/compilers/flutter/patches/stable/move-cache.patch index 64950d4476e..dc77496edb3 100644 --- a/pkgs/development/compilers/flutter/patches/stable/move-cache.patch +++ b/pkgs/development/compilers/flutter/patches/stable/move-cache.patch @@ -1,8 +1,8 @@ diff --git a/dev/devicelab/lib/framework/runner.dart b/dev/devicelab/lib/framework/runner.dart -index 8e511eefd..fef3cca8b 100644 +index d045c83f04..d51973020b 100644 --- a/dev/devicelab/lib/framework/runner.dart +++ b/dev/devicelab/lib/framework/runner.dart -@@ -126,7 +126,7 @@ Future cleanupSystem() async { +@@ -136,7 +136,7 @@ Future cleanupSystem() async { print('\nTelling Gradle to shut down (JAVA_HOME=$javaHome)'); final String gradlewBinaryName = Platform.isWindows ? 'gradlew.bat' : 'gradlew'; final Directory tempDir = Directory.systemTemp.createTempSync('flutter_devicelab_shutdown_gradle.'); @@ -12,7 +12,7 @@ index 8e511eefd..fef3cca8b 100644 if (!Platform.isWindows) { await exec( diff --git a/packages/flutter_tools/lib/src/asset.dart b/packages/flutter_tools/lib/src/asset.dart -index c680de599..480abfb77 100644 +index 8da01315ae..bb8d61d7f2 100644 --- a/packages/flutter_tools/lib/src/asset.dart +++ b/packages/flutter_tools/lib/src/asset.dart @@ -8,6 +8,7 @@ import 'package:meta/meta.dart'; @@ -23,20 +23,20 @@ index c680de599..480abfb77 100644 import 'base/context.dart'; import 'base/file_system.dart'; import 'base/utils.dart'; -@@ -392,7 +393,7 @@ List<_Asset> _getMaterialAssets(String fontSet) { +@@ -399,7 +400,7 @@ List<_Asset> _getMaterialAssets(String fontSet) { for (final Map font in (family['fonts'] as List).cast>()) { final Uri entryUri = globals.fs.path.toUri(font['asset'] as String); result.add(_Asset( - baseDir: globals.fs.path.join(Cache.flutterRoot, 'bin', 'cache', 'artifacts', 'material_fonts'), -+ baseDir: globals.fs.path.join(globals.fsUtils.homeDirPath, '.cache', 'flutter', 'artifacts', 'material_fonts'), ++ baseDir: globals.fs.path.join(globals.fsUtils.homeDirPath, '.cache', 'flutter', 'artifacts', 'material_fonts'), relativeUri: Uri(path: entryUri.pathSegments.last), entryUri: entryUri, package: null, diff --git a/packages/flutter_tools/lib/src/cache.dart b/packages/flutter_tools/lib/src/cache.dart -index c0946782c..bdbc35cb8 100644 +index a35d8f87d0..a40027dc74 100644 --- a/packages/flutter_tools/lib/src/cache.dart +++ b/packages/flutter_tools/lib/src/cache.dart -@@ -202,8 +202,15 @@ class Cache { +@@ -215,8 +215,15 @@ class Cache { return; } assert(_lock == null); @@ -53,7 +53,7 @@ index c0946782c..bdbc35cb8 100644 try { _lock = lockFile.openSync(mode: FileMode.write); } on FileSystemException catch (e) { -@@ -306,7 +313,7 @@ class Cache { +@@ -319,7 +326,7 @@ class Cache { if (_rootOverride != null) { return _fileSystem.directory(_fileSystem.path.join(_rootOverride.path, 'bin', 'cache')); } else { diff --git a/pkgs/development/compilers/fpc/lazarus.nix b/pkgs/development/compilers/fpc/lazarus.nix index 9f50ea9abba..71303305791 100644 --- a/pkgs/development/compilers/fpc/lazarus.nix +++ b/pkgs/development/compilers/fpc/lazarus.nix @@ -98,7 +98,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "Lazarus graphical IDE for the FreePascal language"; + description = "Graphical IDE for the FreePascal language"; homepage = "https://www.lazarus.freepascal.org"; license = licenses.gpl2Plus ; maintainers = with maintainers; [ raskin ]; diff --git a/pkgs/development/compilers/glslang/default.nix b/pkgs/development/compilers/glslang/default.nix index b9d6866cc43..b3364b185da 100644 --- a/pkgs/development/compilers/glslang/default.nix +++ b/pkgs/development/compilers/glslang/default.nix @@ -5,37 +5,67 @@ , python3 , spirv-headers , spirv-tools +, argSpirv-tools ? null +, argSpirv-headers ? null }: +# glslang requires custom versions of spirv-tools and spirb-headers. +# The exact versions are taken from: +# https://github.com/KhronosGroup/glslang/blob/master/known_good.json + +let + localSpirv-tools = if argSpirv-tools == null + then spirv-tools.overrideAttrs (_: { + src = fetchFromGitHub { + owner = "KhronosGroup"; + repo = "SPIRV-Tools"; + rev = "fd8e130510a6b002b28eee5885a9505040a9bdc9"; + sha256 = "00b7xgyrcb2qq63pp3cnw5q1xqx2d9rfn65lai6n6r89s1vh3vg6"; + }; + }) + else argSpirv-tools; + + localSpirv-headers = if argSpirv-headers == null + then spirv-headers.overrideAttrs (_: { + src = fetchFromGitHub { + owner = "KhronosGroup"; + repo = "SPIRV-Headers"; + rev = "f8bf11a0253a32375c32cad92c841237b96696c0"; + sha256 = "1znwjy02dl9rshqzl87rqsv9mfczw7gvwfhcirbl81idahgp4p6l"; + }; + }) + else argSpirv-headers; +in stdenv.mkDerivation rec { pname = "glslang"; - version = "8.13.3559"; + version = "8.13.3743"; src = fetchFromGitHub { owner = "KhronosGroup"; repo = "glslang"; rev = version; - sha256 = "0waamlh2vqh1k40m169294xdlm0iqjkx2vis4qyxfki0r0cnsmnk"; + sha256 = "0d20wfpp2fmbnz1hnsjr9xc62lxpj86ik2qyviqbni0pqj212cry"; }; # These get set at all-packages, keep onto them for child drvs passthru = { - inherit spirv-tools spirv-headers; + spirv-tools = localSpirv-tools; + spirv-headers = localSpirv-headers; }; nativeBuildInputs = [ cmake python3 bison jq ]; enableParallelBuilding = true; postPatch = '' - cp --no-preserve=mode -r "${spirv-tools.src}" External/spirv-tools - ln -s "${spirv-headers.src}" External/spirv-tools/external/spirv-headers + cp --no-preserve=mode -r "${localSpirv-tools.src}" External/spirv-tools + ln -s "${localSpirv-headers.src}" External/spirv-tools/external/spirv-headers ''; # Ensure spirv-headers and spirv-tools match exactly to what is expected preConfigure = '' HEADERS_COMMIT=$(jq -r < known_good.json '.commits|map(select(.name=="spirv-tools/external/spirv-headers"))[0].commit') TOOLS_COMMIT=$(jq -r < known_good.json '.commits|map(select(.name=="spirv-tools"))[0].commit') - if [ "$HEADERS_COMMIT" != "${spirv-headers.src.rev}" ] || [ "$TOOLS_COMMIT" != "${spirv-tools.src.rev}" ]; then + if [ "$HEADERS_COMMIT" != "${localSpirv-headers.src.rev}" ] || [ "$TOOLS_COMMIT" != "${localSpirv-tools.src.rev}" ]; then echo "ERROR: spirv-tools commits do not match expected versions: expected tools at $TOOLS_COMMIT, headers at $HEADERS_COMMIT"; exit 1; fi diff --git a/pkgs/development/compilers/go/1.14.nix b/pkgs/development/compilers/go/1.14.nix index 9c7d70e63e4..e9adb0522c8 100644 --- a/pkgs/development/compilers/go/1.14.nix +++ b/pkgs/development/compilers/go/1.14.nix @@ -36,11 +36,11 @@ in stdenv.mkDerivation rec { pname = "go"; - version = "1.14.9"; + version = "1.14.10"; src = fetchurl { url = "https://dl.google.com/go/go${version}.src.tar.gz"; - sha256 = "0m2581pi1iid39dd0k81r6zypasr8byc6d75nprapg09ri4ci1y6"; + sha256 = "0rfnjl582cm5klv8c2qyyvn26807zn89m5mk282gkc7awfkrjxmk"; }; # perl is used for testing go vet diff --git a/pkgs/development/compilers/go/1.15.nix b/pkgs/development/compilers/go/1.15.nix index ca08ee190c2..8e692dca1e0 100644 --- a/pkgs/development/compilers/go/1.15.nix +++ b/pkgs/development/compilers/go/1.15.nix @@ -36,11 +36,11 @@ in stdenv.mkDerivation rec { pname = "go"; - version = "1.15.2"; + version = "1.15.3"; src = fetchurl { url = "https://dl.google.com/go/go${version}.src.tar.gz"; - sha256 = "0kabkmc3759g5hpsdwh3l8p1fywibnha8c72m8f02lg2rl5rvgr8"; + sha256 = "1228nv4vyzbqv768dl0bimsic47x9yyqld61qbgqqk75f0jn0sl9"; }; # perl is used for testing go vet diff --git a/pkgs/development/compilers/inform7/default.nix b/pkgs/development/compilers/inform7/default.nix index 62bd0142f32..8e5f02e792d 100644 --- a/pkgs/development/compilers/inform7/default.nix +++ b/pkgs/development/compilers/inform7/default.nix @@ -22,7 +22,7 @@ in stdenv.mkDerivation { ''; meta = with stdenv.lib; { - description = "A design system for interactive fiction."; + description = "A design system for interactive fiction"; homepage = "http://inform7.com/"; license = licenses.artistic2; maintainers = with maintainers; [ mbbx6spp ]; diff --git a/pkgs/development/compilers/julia/0.7.nix b/pkgs/development/compilers/julia/0.7.nix deleted file mode 100644 index e0992d80003..00000000000 --- a/pkgs/development/compilers/julia/0.7.nix +++ /dev/null @@ -1,9 +0,0 @@ -import ./shared.nix { - majorVersion = "0"; - minorVersion = "7"; - maintenanceVersion = "0"; - src_sha256 = "1j57569qm2ii8ddzsp08hds2navpk7acdz83kh27dvk44axhwj6f"; - - libuvVersion = "ed3700c849289ed01fe04273a7bf865340b2bd7e"; - libuvSha256 = "137w666zsjw1p0ma3lf94d75hr1q45sgkfmbizkyji2qm57cnxjs"; -} diff --git a/pkgs/development/compilers/julia/1.1.nix b/pkgs/development/compilers/julia/1.1.nix deleted file mode 100644 index 5be34b4c4b4..00000000000 --- a/pkgs/development/compilers/julia/1.1.nix +++ /dev/null @@ -1,9 +0,0 @@ -import ./shared.nix { - majorVersion = "1"; - minorVersion = "1"; - maintenanceVersion = "1"; - src_sha256 = "1yqjd0n42xf9hzxpvc9vysyjj98p42by216jkdqakdy7dkjcmnhq"; - - libuvVersion = "2348256acf5759a544e5ca7935f638d2bc091d60"; - libuvSha256 = "1363f4vqayfcv5zqg07qmzjff56yhad74k16c22ian45lram8mv8"; -} diff --git a/pkgs/development/compilers/llvm/10/lldb.nix b/pkgs/development/compilers/llvm/10/lldb.nix index 47215caa53e..c728efeb2a9 100644 --- a/pkgs/development/compilers/llvm/10/lldb.nix +++ b/pkgs/development/compilers/llvm/10/lldb.nix @@ -43,21 +43,21 @@ stdenv.mkDerivation (rec { darwin.apple_sdk.frameworks.Cocoa ]; - CXXFLAGS = "-fno-rtti"; hardeningDisable = [ "format" ]; cmakeFlags = [ - "-DLLDB_CODESIGN_IDENTITY=" # codesigning makes nondeterministic + "-DLLVM_ENABLE_RTTI=OFF" "-DClang_DIR=${clang-unwrapped}/lib/cmake" "-DLLVM_EXTERNAL_LIT=${lit}/bin/lit" ] ++ stdenv.lib.optionals stdenv.isDarwin [ "-DLLDB_USE_SYSTEM_DEBUGSERVER=ON" + ] ++ stdenv.lib.optionals (!stdenv.isDarwin) [ + "-DLLDB_CODESIGN_IDENTITY=" # codesigning makes nondeterministic ] ++ stdenv.lib.optionals enableManpages [ "-DLLVM_ENABLE_SPHINX=ON" "-DSPHINX_OUTPUT_MAN=ON" "-DSPHINX_OUTPUT_HTML=OFF" - ] -; + ]; enableParallelBuilding = true; diff --git a/pkgs/development/compilers/llvm/11/clang/default.nix b/pkgs/development/compilers/llvm/11/clang/default.nix index 53292ef844b..4f5e20cfe77 100644 --- a/pkgs/development/compilers/llvm/11/clang/default.nix +++ b/pkgs/development/compilers/llvm/11/clang/default.nix @@ -8,7 +8,7 @@ let pname = "clang"; inherit version; - src = fetch "clang" "1p64l5a3x55118nyms1805qbk3r9w37nz1rb7xvbgc9fmyzaffay"; + src = fetch "clang" "02ajkij85966vd150iy246mv16dsaph1kfi0y8wnncp8w6nar5hg"; inherit clang-tools-extra_src; unpackPhase = '' @@ -86,8 +86,6 @@ let passthru = { isClang = true; inherit llvm; - } // stdenv.lib.optionalAttrs (stdenv.targetPlatform.isLinux || (stdenv.cc.isGNU && stdenv.cc.cc ? gcc)) { - gcc = if stdenv.cc.isGNU then stdenv.cc.cc else stdenv.cc.cc.gcc; }; meta = { diff --git a/pkgs/development/compilers/llvm/11/compiler-rt-X86-support-extension.patch b/pkgs/development/compilers/llvm/11/compiler-rt-X86-support-extension.patch new file mode 100644 index 00000000000..f6f9336ad5a --- /dev/null +++ b/pkgs/development/compilers/llvm/11/compiler-rt-X86-support-extension.patch @@ -0,0 +1,23 @@ +diff --git a/lib/builtins/CMakeLists.txt b/lib/builtins/CMakeLists.txt +index 3a66dd9c3fb..7efc85d9f9f 100644 +--- a/lib/builtins/CMakeLists.txt ++++ b/lib/builtins/CMakeLists.txt +@@ -301,6 +301,10 @@ if (NOT MSVC) + i386/umoddi3.S + ) + ++ set(i486_SOURCES ${i386_SOURCES}) ++ set(i586_SOURCES ${i386_SOURCES}) ++ set(i686_SOURCES ${i386_SOURCES}) ++ + if (WIN32) + set(i386_SOURCES + ${i386_SOURCES} +@@ -608,6 +612,7 @@ else () + endif() + + foreach (arch ${BUILTIN_SUPPORTED_ARCH}) ++ message("arch: ${arch}") + if (CAN_TARGET_${arch}) + # For ARM archs, exclude any VFP builtins if VFP is not supported + if (${arch} MATCHES "^(arm|armhf|armv7|armv7s|armv7k|armv7m|armv7em)$") diff --git a/pkgs/development/compilers/llvm/11/compiler-rt.nix b/pkgs/development/compilers/llvm/11/compiler-rt.nix index e0cb712fe61..b8a5fcd5661 100644 --- a/pkgs/development/compilers/llvm/11/compiler-rt.nix +++ b/pkgs/development/compilers/llvm/11/compiler-rt.nix @@ -11,7 +11,7 @@ in stdenv.mkDerivation rec { pname = "compiler-rt"; inherit version; - src = fetch pname "0cpyi5g0wlwyb7gvy47k5rjiipnlhrr3ks4q4rlrlyax6w9dx98n"; + src = fetch pname "0d5j5l8phwqjjscmk8rmqn0i2i0abl537gdbkagl8fjpzy1gyjip"; nativeBuildInputs = [ cmake python3 llvm ]; buildInputs = stdenv.lib.optional stdenv.hostPlatform.isDarwin libcxxabi; @@ -24,6 +24,8 @@ stdenv.mkDerivation rec { "-DCOMPILER_RT_DEFAULT_TARGET_ONLY=ON" "-DCMAKE_C_COMPILER_TARGET=${stdenv.hostPlatform.config}" "-DCMAKE_ASM_COMPILER_TARGET=${stdenv.hostPlatform.config}" + ] ++ stdenv.lib.optionals (stdenv.isDarwin) [ + "-DDARWIN_macosx_OVERRIDE_SDK_VERSION=ON" ] ++ stdenv.lib.optionals (useLLVM || bareMetal || isMusl) [ "-DCOMPILER_RT_BUILD_SANITIZERS=OFF" "-DCOMPILER_RT_BUILD_XRAY=OFF" @@ -47,6 +49,7 @@ stdenv.mkDerivation rec { patches = [ ./compiler-rt-codesign.patch # Revert compiler-rt commit that makes codesign mandatory + ./compiler-rt-X86-support-extension.patch # Add support for i486 i586 i686 by reusing i386 config ]# ++ stdenv.lib.optional stdenv.hostPlatform.isMusl ./sanitizers-nongnu.patch ++ stdenv.lib.optional stdenv.hostPlatform.isAarch32 ./compiler-rt-armv7l.patch; @@ -60,6 +63,8 @@ stdenv.mkDerivation rec { substituteInPlace cmake/builtin-config-ix.cmake \ --replace 'set(X86 i386)' 'set(X86 i386 i486 i586 i686)' '' + stdenv.lib.optionalString stdenv.isDarwin '' + substituteInPlace cmake/builtin-config-ix.cmake \ + --replace 'set(ARM64 arm64 arm64e)' 'set(ARM64)' substituteInPlace cmake/config-ix.cmake \ --replace 'set(COMPILER_RT_HAS_TSAN TRUE)' 'set(COMPILER_RT_HAS_TSAN FALSE)' '' + stdenv.lib.optionalString (useLLVM) '' diff --git a/pkgs/development/compilers/llvm/11/default.nix b/pkgs/development/compilers/llvm/11/default.nix index eb2349f0acd..a404d160695 100644 --- a/pkgs/development/compilers/llvm/11/default.nix +++ b/pkgs/development/compilers/llvm/11/default.nix @@ -1,21 +1,21 @@ -{ lowPrio, newScope, pkgs, stdenv, cmake +{ lowPrio, newScope, pkgs, stdenv, cmake, gccForLibs , libxml2, python3, isl, fetchurl, overrideCC, wrapCCWith, wrapBintoolsWith +, buildPackages , buildLlvmTools # tools, but from the previous stage, for cross , targetLlvmLibraries # libraries, but from the next stage, for cross }: let release_version = "11.0.0"; - candidate = "rc5"; - version = "${release_version}${candidate}"; # differentiating these (variables) is important for RCs + version = "${release_version}"; # differentiating these (variables) is important for RCs targetConfig = stdenv.targetPlatform.config; fetch = name: sha256: fetchurl { - url = "https://github.com/llvm/llvm-project/releases/download/llvmorg-${release_version}-${candidate}/${name}-${version}.src.tar.xz"; + url = "https://github.com/llvm/llvm-project/releases/download/llvmorg-${release_version}/${name}-${version}.src.tar.xz"; inherit sha256; }; - clang-tools-extra_src = fetch "clang-tools-extra" "0slqx5430pc699idabqnq34s9n0y2fq6q8z8hn5wakbi93dal71r"; + clang-tools-extra_src = fetch "clang-tools-extra" "02bcwwn54661madhq4nxc069s7p7pj5gpqi8ww50w3anbpviilzy"; tools = stdenv.lib.makeExtensible (tools: let callPackage = newScope (tools // { inherit stdenv cmake libxml2 python3 isl release_version version fetch; }); @@ -26,8 +26,8 @@ let ln -s "${targetLlvmLibraries.compiler-rt.out}/lib" "$rsrc/lib" ln -s "${targetLlvmLibraries.compiler-rt.out}/share" "$rsrc/share" echo "-resource-dir=$rsrc" >> $out/nix-support/cc-cflags - '' + stdenv.lib.optionalString (stdenv.targetPlatform.isLinux && tools.clang-unwrapped ? gcc && !(stdenv.targetPlatform.useLLVM or false)) '' - echo "--gcc-toolchain=${tools.clang-unwrapped.gcc}" >> $out/nix-support/cc-cflags + '' + stdenv.lib.optionalString (stdenv.targetPlatform.isLinux && !(stdenv.targetPlatform.useLLVM or false)) '' + echo "--gcc-toolchain=${gccForLibs}" >> $out/nix-support/cc-cflags ''; in { @@ -61,7 +61,8 @@ let libstdcxxClang = wrapCCWith rec { cc = tools.clang-unwrapped; - libcxx = null; # libstdcxx is smuggled in with clang.gcc + # libstdcxx is taken from gcc in an ad-hoc way in cc-wrapper. + libcxx = null; extraPackages = [ targetLlvmLibraries.compiler-rt ]; diff --git a/pkgs/development/compilers/llvm/11/libc++/default.nix b/pkgs/development/compilers/llvm/11/libc++/default.nix index 7a7cf06600b..1ce879cccb6 100644 --- a/pkgs/development/compilers/llvm/11/libc++/default.nix +++ b/pkgs/development/compilers/llvm/11/libc++/default.nix @@ -1,33 +1,31 @@ -{ lib, stdenv, fetch, cmake, python3, libcxxabi, fixDarwinDylibNames, version +{ lib, stdenv, fetch, cmake, python3, libcxxabi, llvm, fixDarwinDylibNames, version , enableShared ? true }: stdenv.mkDerivation { pname = "libc++"; inherit version; - src = fetch "libcxx" "1rlp8hx0nmqpx0gxq8hh9kqbkkzfpadx9chm47c38d4lahdksr1v"; + src = fetch "libcxx" "0ylbkcd38zrrz9xmkq9na3d9s8d96hc286dwfwd73wi205lyc7kc"; postUnpack = '' unpackFile ${libcxxabi.src} - export LIBCXXABI_INCLUDE_DIR="$PWD/$(ls -d libcxxabi-${version}*)/include" + mv libcxxabi-* libcxxabi + unpackFile ${llvm.src} + mv llvm-* llvm ''; patches = stdenv.lib.optional stdenv.hostPlatform.isMusl ../../libcxx-0001-musl-hacks.patch; - preConfigure = '' - # Get headers from the cxxabi source so we can see private headers not installed by the cxxabi package - cmakeFlagsArray=($cmakeFlagsArray -DLIBCXX_CXX_ABI_INCLUDE_PATHS="$LIBCXXABI_INCLUDE_DIR") - '' + lib.optionalString stdenv.hostPlatform.isMusl '' + preConfigure = lib.optionalString stdenv.hostPlatform.isMusl '' patchShebangs utils/cat_files.py ''; - nativeBuildInputs = [ cmake ] - ++ stdenv.lib.optional (stdenv.hostPlatform.isMusl || stdenv.hostPlatform.isWasi) python3; - buildInputs = [ libcxxabi ] ++ lib.optional stdenv.isDarwin fixDarwinDylibNames; + nativeBuildInputs = [ cmake python3 ] + ++ lib.optional stdenv.isDarwin fixDarwinDylibNames; + + buildInputs = [ libcxxabi ]; cmakeFlags = [ - "-DLIBCXX_LIBCXXABI_LIB_PATH=${libcxxabi}/lib" - "-DLIBCXX_LIBCPPABI_VERSION=2" "-DLIBCXX_CXX_ABI=libcxxabi" ] ++ stdenv.lib.optional (stdenv.hostPlatform.isMusl || stdenv.hostPlatform.isWasi) "-DLIBCXX_HAS_MUSL_LIBC=1" ++ stdenv.lib.optional (stdenv.hostPlatform.useLLVM or false) "-DLIBCXX_USE_COMPILER_RT=ON" diff --git a/pkgs/development/compilers/llvm/11/libc++abi.nix b/pkgs/development/compilers/llvm/11/libc++abi.nix index ba3b7fd9d92..edf83197d2c 100644 --- a/pkgs/development/compilers/llvm/11/libc++abi.nix +++ b/pkgs/development/compilers/llvm/11/libc++abi.nix @@ -5,7 +5,7 @@ stdenv.mkDerivation { pname = "libc++abi"; inherit version; - src = fetch "libcxxabi" "0214sl9m80hb8v0mdkrwl8l4ca3dvapis23mkld85bnxa8zq2c1q"; + src = fetch "libcxxabi" "05ac7rkjbla03bc0lf92f901dfjgxdvp8cr9fpn59a5p4x27ssaq"; nativeBuildInputs = [ cmake ]; buildInputs = stdenv.lib.optional (!stdenv.isDarwin && !stdenv.isFreeBSD && !stdenv.hostPlatform.isWasm) libunwind; @@ -24,14 +24,15 @@ stdenv.mkDerivation { postUnpack = '' unpackFile ${libcxx.src} + mv libcxx-* libcxx unpackFile ${llvm.src} - cmakeFlags+=" -DLLVM_PATH=$PWD/$(ls -d llvm-*) -DLIBCXXABI_LIBCXX_PATH=$PWD/$(ls -d libcxx-*)" + mv llvm-* llvm '' + stdenv.lib.optionalString stdenv.isDarwin '' export TRIPLE=x86_64-apple-darwin '' + stdenv.lib.optionalString stdenv.hostPlatform.isMusl '' - patch -p1 -d $(ls -d libcxx-*) -i ${../libcxx-0001-musl-hacks.patch} + patch -p1 -d libcxx -i ${../libcxx-0001-musl-hacks.patch} '' + stdenv.lib.optionalString stdenv.hostPlatform.isWasm '' - patch -p1 -d $(ls -d llvm-*) -i ${./libcxxabi-wasm.patch} + patch -p1 -d llvm -i ${./libcxxabi-wasm.patch} ''; installPhase = if stdenv.isDarwin diff --git a/pkgs/development/compilers/llvm/11/libunwind.nix b/pkgs/development/compilers/llvm/11/libunwind.nix index 0fc3fcabb33..5a4492e803f 100644 --- a/pkgs/development/compilers/llvm/11/libunwind.nix +++ b/pkgs/development/compilers/llvm/11/libunwind.nix @@ -4,7 +4,7 @@ stdenv.mkDerivation rec { pname = "libunwind"; inherit version; - src = fetch pname "1xw8y6agnix7qlwh676gm1kbkzh9c1nz7l3vhxjpazbk70biz9mq"; + src = fetch pname "0bwjd2xf51r2apn8p0f9shb6nc8hnqzq1n9gggjvyjmi6cf02mc4"; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/compilers/llvm/11/lld.nix b/pkgs/development/compilers/llvm/11/lld.nix index 364fdb727d0..20eb87c548f 100644 --- a/pkgs/development/compilers/llvm/11/lld.nix +++ b/pkgs/development/compilers/llvm/11/lld.nix @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { pname = "lld"; inherit version; - src = fetch pname "1ibyahcxxckdfwh95f1dzxgcf1fsd0r9rpanm3dnn6nb99mn0is4"; + src = fetch pname "077xyh7sij6mhp4dc4kdcmp9whrpz332fa12rwxnzp3wgd5bxrzg"; nativeBuildInputs = [ cmake ]; buildInputs = [ llvm libxml2 ]; diff --git a/pkgs/development/compilers/llvm/11/lldb.nix b/pkgs/development/compilers/llvm/11/lldb.nix index b7949692145..0ae55d45349 100644 --- a/pkgs/development/compilers/llvm/11/lldb.nix +++ b/pkgs/development/compilers/llvm/11/lldb.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation (rec { pname = "lldb"; inherit version; - src = fetch pname "1v8nvw6rxmi7w3ayjcjan4plb5ryhizc41sras7fza2l7n3cz8iz"; + src = fetch pname "0wic9lyb2la9bkzdc13szkm4f793w1mddp50xvh237iraygw0w45"; patches = [ ./lldb-procfs.patch ]; @@ -43,21 +43,21 @@ stdenv.mkDerivation (rec { darwin.apple_sdk.frameworks.Cocoa ]; - CXXFLAGS = "-fno-rtti"; hardeningDisable = [ "format" ]; cmakeFlags = [ - "-DLLDB_CODESIGN_IDENTITY=" # codesigning makes nondeterministic + "-DLLVM_ENABLE_RTTI=OFF" "-DClang_DIR=${clang-unwrapped}/lib/cmake" "-DLLVM_EXTERNAL_LIT=${lit}/bin/lit" ] ++ stdenv.lib.optionals stdenv.isDarwin [ "-DLLDB_USE_SYSTEM_DEBUGSERVER=ON" + ] ++ stdenv.lib.optionals (!stdenv.isDarwin) [ + "-DLLDB_CODESIGN_IDENTITY=" # codesigning makes nondeterministic ] ++ stdenv.lib.optionals enableManpages [ "-DLLVM_ENABLE_SPHINX=ON" "-DSPHINX_OUTPUT_MAN=ON" "-DSPHINX_OUTPUT_HTML=OFF" - ] -; + ]; enableParallelBuilding = true; diff --git a/pkgs/development/compilers/llvm/11/llvm.nix b/pkgs/development/compilers/llvm/11/llvm.nix index b55ec1f0a10..3f37cac078f 100644 --- a/pkgs/development/compilers/llvm/11/llvm.nix +++ b/pkgs/development/compilers/llvm/11/llvm.nix @@ -32,8 +32,8 @@ in stdenv.mkDerivation (rec { pname = "llvm"; inherit version; - src = fetch pname "1k7i2syqdm29l10di3ws64i02snh9jhd1s2jzgh8565b0vg25wlc"; - polly_src = fetch "polly" "0l0n09f6sy30x825w85v8n7pvya0ciq89r0abv66n8ggwmrk3rnw"; + src = fetch pname "0s94lwil98w7zb7cjrbnxli0z7gklb312pkw74xs1d6zk346hgwi"; + polly_src = fetch "polly" "0h442ivcslr3dv3q3g1nw5avh77f8cxsp6zild1hgspj266xpynw"; unpackPhase = '' unpackFile $src @@ -96,7 +96,7 @@ in stdenv.mkDerivation (rec { ''; # E.g. mesa.drivers use the build-id as a cache key (see #93946): - LDFLAGS = optionalString enableSharedLibraries "-Wl,--build-id=sha1"; + LDFLAGS = optionalString (enableSharedLibraries && !stdenv.isDarwin) "-Wl,--build-id=sha1"; cmakeFlags = with stdenv; [ "-DCMAKE_BUILD_TYPE=${if debugVersion then "Debug" else "Release"}" diff --git a/pkgs/development/compilers/llvm/11/openmp.nix b/pkgs/development/compilers/llvm/11/openmp.nix index 3cc19ad711d..5fd6c62840d 100644 --- a/pkgs/development/compilers/llvm/11/openmp.nix +++ b/pkgs/development/compilers/llvm/11/openmp.nix @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { pname = "openmp"; inherit version; - src = fetch pname "1yq7m0kwnlgq8ni719g9fny0x5wrvm8szp11b3q8zz39rqqyphsz"; + src = fetch pname "0k389d0g9zlfyzh1kpb3i5jdawzpn0hrdxzbjinpvdv7rbw4sw1d"; nativeBuildInputs = [ cmake perl ]; buildInputs = [ llvm ]; diff --git a/pkgs/development/compilers/miranda/default.nix b/pkgs/development/compilers/miranda/default.nix index c3cb854cdf4..55d3976858b 100644 --- a/pkgs/development/compilers/miranda/default.nix +++ b/pkgs/development/compilers/miranda/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchzip, fetchpatch, gcc }: +{ stdenv, lib, fetchzip, fetchpatch }: stdenv.mkDerivation rec { pname = "miranda"; diff --git a/pkgs/development/compilers/mlkit/default.nix b/pkgs/development/compilers/mlkit/default.nix index 6fa58145250..ecb3362e77a 100644 --- a/pkgs/development/compilers/mlkit/default.nix +++ b/pkgs/development/compilers/mlkit/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "mlkit"; - version = "4.5.0"; + version = "4.5.1"; src = fetchFromGitHub { owner = "melsman"; repo = "mlkit"; rev = "v${version}"; - sha256 = "0fc0y40qphn02857fv2dvhwzzsvgixzchx9i6i0x80xfv7z68fbh"; + sha256 = "1zigigp168737vjrw5vijgyw4k1bgz4sr7j3rwlibw52snsh4y1c"; }; nativeBuildInputs = [ autoreconfHook mlton ]; diff --git a/pkgs/development/compilers/mozart/default.nix b/pkgs/development/compilers/mozart/default.nix index 025652c7492..d9ab475880e 100644 --- a/pkgs/development/compilers/mozart/default.nix +++ b/pkgs/development/compilers/mozart/default.nix @@ -79,7 +79,7 @@ in stdenv.mkDerivation rec { ]; meta = { - description = "An open source implementation of Oz 3."; + description = "An open source implementation of Oz 3"; maintainers = [ lib.maintainers.layus ]; license = lib.licenses.bsd2; homepage = "https://mozart.github.io"; diff --git a/pkgs/development/compilers/opa/default.nix b/pkgs/development/compilers/opa/default.nix index c20e0d0ef99..864bb8e1b26 100644 --- a/pkgs/development/compilers/opa/default.nix +++ b/pkgs/development/compilers/opa/default.nix @@ -15,6 +15,8 @@ stdenv.mkDerivation rec { sha256 = "1qs91rq9xrafv2mf2v415k8lv91ab3ycz0xkpjh1mng5ca3pjlf3"; }; + patches = [ ./ocaml-4.03.patch ]; + # Paths so the opa compiler code generation will use the same programs as were # used to build opa. codeGeneratorPaths = stdenv.lib.makeBinPath [ ocamlPackages.ocaml gcc binutils gnumake nodejs ]; @@ -23,7 +25,7 @@ stdenv.mkDerivation rec { patchShebangs . ( cat ./compiler/buildinfos/buildInfos.ml.pre - ./compiler/buildinfos/generate_buildinfos.sh . --release --version ./compiler/buildinfos/version_major.txt + ./compiler/buildinfos/generate_buildinfos.sh . --release --version ./compiler/buildinfos/version_major.txt echo let opa_git_version = ${version} echo 'let opa_git_sha = "xxxx"' cat ./compiler/buildinfos/buildInfos.ml.post @@ -34,6 +36,8 @@ stdenv.mkDerivation rec { done export CAMLP4O=${ocamlPackages.camlp4}/bin/camlp4o export CAMLP4ORF=${ocamlPackages.camlp4}/bin/camlp4orf + export OCAMLBUILD=${ocamlPackages.ocamlbuild}/bin/ocamlbuild + substituteInPlace _tags --replace ', warn_error_A' "" ''; prefixKey = "-prefix "; diff --git a/pkgs/development/compilers/opa/ocaml-4.03.patch b/pkgs/development/compilers/opa/ocaml-4.03.patch new file mode 100644 index 00000000000..5e2a3e2522e --- /dev/null +++ b/pkgs/development/compilers/opa/ocaml-4.03.patch @@ -0,0 +1,35 @@ +--- a/compiler/passes/surfaceAstRenaming.ml ++++ b/compiler/passes/surfaceAstRenaming.ml +@@ -1110,7 +1110,7 @@ let find_opt_local_or_global name all_env = + | None -> find_opt_global name all_env + | v -> v + +-let path_expr_to_module_aux p = function ++let path_expr_to_module_aux p : _ -> _ result = function + | Some (OpenedIdent (tree, ident, path)) -> + (match Tree.get_path_opt tree p with + (* the path is not in the tree, which means a 'dot' access +diff --git a/ocamllib/libbase/baseInt64.mli b/ocamllib/libbase/baseInt64.mli +index fb544706..734437f9 100644 +--- a/ocamllib/libbase/baseInt64.mli ++++ b/ocamllib/libbase/baseInt64.mli +@@ -40,7 +40,9 @@ external shift_right_logical : int64 -> int -> int64 = "%int64_lsr" + external of_int : int -> int64 = "%int64_of_int" + external to_int : int64 -> int = "%int64_to_int" + external of_float : float -> int64 = "caml_int64_of_float" ++ "caml_int64_of_float_unboxed" [@@unboxed] [@@noalloc] + external to_float : int64 -> float = "caml_int64_to_float" ++ "caml_int64_to_float_unboxed" [@@unboxed] [@@noalloc] + external of_int32 : int32 -> int64 = "%int64_of_int32" + external to_int32 : int64 -> int32 = "%int64_to_int32" + external of_nativeint : nativeint -> int64 = "%int64_of_nativeint" +@@ -48,7 +50,9 @@ external to_nativeint : int64 -> nativeint = "%int64_to_nativeint" + external of_string : string -> int64 = "caml_int64_of_string" + val to_string : int64 -> string + external bits_of_float : float -> int64 = "caml_int64_bits_of_float" ++ "caml_int64_bits_of_float_unboxed" [@@unboxed] [@@noalloc] + external float_of_bits : int64 -> float = "caml_int64_float_of_bits" ++ "caml_int64_float_of_bits_unboxed" [@@unboxed] [@@noalloc] + type t = int64 + val compare : t -> t -> int + external format : string -> int64 -> string = "caml_int64_format" diff --git a/pkgs/development/compilers/openjdk/openjfx/11.nix b/pkgs/development/compilers/openjdk/openjfx/11.nix index adb564f7cfe..513f4d968f6 100644 --- a/pkgs/development/compilers/openjdk/openjfx/11.nix +++ b/pkgs/development/compilers/openjdk/openjfx/11.nix @@ -106,7 +106,7 @@ in makePackage { meta = with stdenv.lib; { homepage = "http://openjdk.java.net/projects/openjfx/"; license = licenses.gpl2; - description = "The next-generation Java client toolkit."; + description = "The next-generation Java client toolkit"; maintainers = with maintainers; [ abbradar ]; platforms = [ "i686-linux" "x86_64-linux" ]; }; diff --git a/pkgs/development/compilers/openjdk/openjfx/14.nix b/pkgs/development/compilers/openjdk/openjfx/14.nix index 22b5be7dc69..51512c5afca 100644 --- a/pkgs/development/compilers/openjdk/openjfx/14.nix +++ b/pkgs/development/compilers/openjdk/openjfx/14.nix @@ -108,7 +108,7 @@ in makePackage { meta = with stdenv.lib; { homepage = "http://openjdk.java.net/projects/openjfx/"; license = licenses.gpl2; - description = "The next-generation Java client toolkit."; + description = "The next-generation Java client toolkit"; maintainers = with maintainers; [ abbradar ]; platforms = [ "i686-linux" "x86_64-linux" ]; }; diff --git a/pkgs/development/compilers/picat/default.nix b/pkgs/development/compilers/picat/default.nix index eba45ed8bbf..12a020240c8 100644 --- a/pkgs/development/compilers/picat/default.nix +++ b/pkgs/development/compilers/picat/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation { pname = "picat"; - version = "3.0"; + version = "3.0p2"; src = fetchurl { - url = "http://picat-lang.org/download/picat30_src.tar.gz"; - sha256 = "0ivqp4ifknc019rb975vx5j3rmr69x2f3ig7ybb38wm5zx5mljgg"; + url = "http://picat-lang.org/download/picat30_2_src.tar.gz"; + sha256 = "0sn4fqj2ryalcndx1df5kx5rzb4pfcrza5ljlg9dkfbqv02xgxkd"; }; buildInputs = [ zlib ]; diff --git a/pkgs/development/compilers/ponyc/pony-stable.nix b/pkgs/development/compilers/ponyc/pony-stable.nix index 0a526023902..3c1b2a0f91b 100644 --- a/pkgs/development/compilers/ponyc/pony-stable.nix +++ b/pkgs/development/compilers/ponyc/pony-stable.nix @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { installFlags = [ "prefix=${placeholder "out"}" "install" ]; meta = { - description = "A simple dependency manager for the Pony language."; + description = "A simple dependency manager for the Pony language"; homepage = "https://www.ponylang.org"; license = stdenv.lib.licenses.bsd2; maintainers = with stdenv.lib.maintainers; [ dipinhora kamilchm patternspandemic ]; diff --git a/pkgs/development/compilers/rasm/default.nix b/pkgs/development/compilers/rasm/default.nix index ced0855597c..87dae128f73 100644 --- a/pkgs/development/compilers/rasm/default.nix +++ b/pkgs/development/compilers/rasm/default.nix @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { buildPhase = '' # according to official documentation - cc rasm_v*.c -O2 -lm -lrt -march=native -o rasm + cc rasm_v*.c -O2 -lm -lrt -o rasm ''; installPhase = '' diff --git a/pkgs/development/compilers/rust/1_44.nix b/pkgs/development/compilers/rust/1_44.nix deleted file mode 100644 index 17b93cf88eb..00000000000 --- a/pkgs/development/compilers/rust/1_44.nix +++ /dev/null @@ -1,43 +0,0 @@ -# New rust versions should first go to staging. -# Things to check after updating: -# 1. Rustc should produce rust binaries on x86_64-linux, aarch64-linux and x86_64-darwin: -# i.e. nix-shell -p fd or @GrahamcOfBorg build fd on github -# This testing can be also done by other volunteers as part of the pull -# request review, in case platforms cannot be covered. -# 2. The LLVM version used for building should match with rust upstream. -# 3. Firefox and Thunderbird should still build on x86_64-linux. - -{ stdenv, lib -, buildPackages -, newScope, callPackage -, CoreFoundation, Security -, llvmPackages_5 -, pkgsBuildTarget, pkgsBuildBuild -, makeRustPlatform -} @ args: - -import ./default.nix { - rustcVersion = "1.44.1"; - rustcSha256 = "0ww4z2v3gxgn3zddqzwqya1gln04p91ykbrflnpdbmcd575n8bky"; - - # Note: the version MUST be one version prior to the version we're - # building - bootstrapVersion = "1.43.1"; - - # fetch hashes by running `print-hashes.sh 1.44.1` - bootstrapHashes = { - i686-unknown-linux-gnu = "0626fa8a6a2387021413d740543f7496656d81115e2284e4ef73217128398990"; - x86_64-unknown-linux-gnu = "25cd71b95bba0daef56bad8c943a87368c4185b90983f4412f46e3e2418c0505"; - arm-unknown-linux-gnueabihf = "16b9c4861565a195323d144fd0f54c0ae794ee3d2a867682f8aedbdacaad5a6c"; - armv7-unknown-linux-gnueabihf = "0c32a5958a358a031e6ca52074cfd45256688dc334db315199f5dbbf7562e5b1"; - aarch64-unknown-linux-gnu = "fbb612387a64c9da2869725afffc1f66a72d6e7ba6667ba717cd52c33080b7fb"; - x86_64-apple-darwin = "e1c3e1426a9e615079159d6b619319235e3ca7b395e7603330375bfffcbb7003"; - }; - - selectRustPackage = pkgs: pkgs.rust_1_44; - - rustcPatches = [ - ]; -} - -(builtins.removeAttrs args [ "fetchpatch" ]) diff --git a/pkgs/development/compilers/rust/1_45.nix b/pkgs/development/compilers/rust/1_45.nix index 05db4520f65..94c70880dba 100644 --- a/pkgs/development/compilers/rust/1_45.nix +++ b/pkgs/development/compilers/rust/1_45.nix @@ -11,7 +11,7 @@ , buildPackages , newScope, callPackage , CoreFoundation, Security -, llvmPackages_5 +, llvmPackages , pkgsBuildTarget, pkgsBuildBuild , makeRustPlatform } @ args: diff --git a/pkgs/development/compilers/rust/1_46.nix b/pkgs/development/compilers/rust/1_46.nix new file mode 100644 index 00000000000..c999b346ee6 --- /dev/null +++ b/pkgs/development/compilers/rust/1_46.nix @@ -0,0 +1,45 @@ +# New rust versions should first go to staging. +# Things to check after updating: +# 1. Rustc should produce rust binaries on x86_64-linux, aarch64-linux and x86_64-darwin: +# i.e. nix-shell -p fd or @GrahamcOfBorg build fd on github +# This testing can be also done by other volunteers as part of the pull +# request review, in case platforms cannot be covered. +# 2. The LLVM version used for building should match with rust upstream. +# Check the version number in the src/llvm-project git submodule in: +# https://github.com/rust-lang/rust/blob//.gitmodules +# 3. Firefox and Thunderbird should still build on x86_64-linux. + +{ stdenv, lib +, buildPackages +, newScope, callPackage +, CoreFoundation, Security +, llvmPackages +, pkgsBuildTarget, pkgsBuildBuild +, makeRustPlatform +} @ args: + +import ./default.nix { + rustcVersion = "1.46.0"; + rustcSha256 = "0a17jby2pd050s24cy4dfc0gzvgcl585v3vvyfilniyvjrqknsid"; + + # Note: the version MUST be one version prior to the version we're + # building + bootstrapVersion = "1.45.2"; + + # fetch hashes by running `print-hashes.sh 1.45.2` + bootstrapHashes = { + i686-unknown-linux-gnu = "5b2050dde23152750de89f7e59acaab6bf088d0beb5854c69c9a545fd254b936"; + x86_64-unknown-linux-gnu = "860feed955726a4d96ffe40758a110053326b9ae11c9e1ee059e9c6222f25643"; + arm-unknown-linux-gnueabihf = "ddb5f59bbdef84e0b7c83049461e003ed031dd881a4622365c3d475102535c60"; + armv7-unknown-linux-gnueabihf = "7a556581f87602705f9c89b04cce621cfbba9050b6fbe478166e91d164567531"; + aarch64-unknown-linux-gnu = "151fad66442d28a4e4786753d1afb559c4a3d359081c64769273a31c2f0f4d30"; + x86_64-apple-darwin = "6e8067624ede10aa23081d62e0086c6f42f7228cc0d00fb5ff24d4dac65249d6"; + }; + + selectRustPackage = pkgs: pkgs.rust_1_46; + + rustcPatches = [ + ]; +} + +(builtins.removeAttrs args [ "fetchpatch" ]) diff --git a/pkgs/development/compilers/rust/default.nix b/pkgs/development/compilers/rust/default.nix index fc1af5a3f94..95febd8945d 100644 --- a/pkgs/development/compilers/rust/default.nix +++ b/pkgs/development/compilers/rust/default.nix @@ -10,7 +10,7 @@ , buildPackages , newScope, callPackage , CoreFoundation, Security -, llvmPackages_5 +, llvmPackages , pkgsBuildTarget, pkgsBuildBuild , makeRustPlatform }: rec { @@ -82,10 +82,10 @@ # Use boot package set to break cycle rustPlatform = bootRustPlatform; } // lib.optionalAttrs (stdenv.cc.isClang && stdenv.hostPlatform == stdenv.buildPlatform) { - stdenv = llvmPackages_5.stdenv; - pkgsBuildBuild = pkgsBuildBuild // { targetPackages.stdenv = llvmPackages_5.stdenv; }; - pkgsBuildHost = pkgsBuildBuild // { targetPackages.stdenv = llvmPackages_5.stdenv; }; - pkgsBuildTarget = pkgsBuildTarget // { targetPackages.stdenv = llvmPackages_5.stdenv; }; + stdenv = llvmPackages.stdenv; + pkgsBuildBuild = pkgsBuildBuild // { targetPackages.stdenv = llvmPackages.stdenv; }; + pkgsBuildHost = pkgsBuildBuild // { targetPackages.stdenv = llvmPackages.stdenv; }; + pkgsBuildTarget = pkgsBuildTarget // { targetPackages.stdenv = llvmPackages.stdenv; }; }); rustfmt = self.callPackage ./rustfmt.nix { inherit Security; }; cargo = self.callPackage ./cargo.nix { diff --git a/pkgs/development/compilers/sbcl/2.0.0.nix b/pkgs/development/compilers/sbcl/2.0.9.nix similarity index 97% rename from pkgs/development/compilers/sbcl/2.0.0.nix rename to pkgs/development/compilers/sbcl/2.0.9.nix index 6df98a9a60e..148ecccf131 100644 --- a/pkgs/development/compilers/sbcl/2.0.0.nix +++ b/pkgs/development/compilers/sbcl/2.0.9.nix @@ -11,11 +11,11 @@ stdenv.mkDerivation rec { pname = "sbcl"; - version = "2.0.0"; + version = "2.0.9"; src = fetchurl { url = "mirror://sourceforge/project/sbcl/sbcl/${version}/${pname}-${version}-source.tar.bz2"; - sha256 = "1krgd69cirp4ili2pfsh1a0mfvq722jbknlvmf17qhsxh1b94dlh"; + sha256 = "sha256:17wvrcwgp45z9b6arik31fjnz7908qhr5ackxq1y0gqi1hsh1xy4"; }; buildInputs = [texinfo]; diff --git a/pkgs/development/compilers/sbcl/default.nix b/pkgs/development/compilers/sbcl/default.nix index d4a00f57b6a..3c7fca3c4b0 100644 --- a/pkgs/development/compilers/sbcl/default.nix +++ b/pkgs/development/compilers/sbcl/default.nix @@ -11,11 +11,11 @@ stdenv.mkDerivation rec { pname = "sbcl"; - version = "2.0.2"; + version = "2.0.8"; src = fetchurl { url = "mirror://sourceforge/project/sbcl/sbcl/${version}/${pname}-${version}-source.tar.bz2"; - sha256 = "07pyzdjnhcpqwvr3rrk4i18maqdywbq1qj93fnpx1h4b7dp08r28"; + sha256 = "sha256:1xwrwvps7drrpyw3wg5h3g2qajmkwqs9gz0fdw1ns9adp7vld390"; }; buildInputs = [texinfo]; diff --git a/pkgs/development/compilers/scala/dotty-bare.nix b/pkgs/development/compilers/scala/dotty-bare.nix index 9b060227067..cefa4537c36 100644 --- a/pkgs/development/compilers/scala/dotty-bare.nix +++ b/pkgs/development/compilers/scala/dotty-bare.nix @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "Research platform for new language concepts and compiler technologies for Scala."; + description = "Research platform for new language concepts and compiler technologies for Scala"; longDescription = '' Dotty is a platform to try out new language concepts and compiler technologies for Scala. The focus is mainly on simplification. We remove extraneous syntax (e.g. no XML literals), diff --git a/pkgs/development/compilers/shaderc/default.nix b/pkgs/development/compilers/shaderc/default.nix index e7308973d5c..23532cc8446 100644 --- a/pkgs/development/compilers/shaderc/default.nix +++ b/pkgs/development/compilers/shaderc/default.nix @@ -8,24 +8,24 @@ let glslang = fetchFromGitHub { owner = "KhronosGroup"; repo = "glslang"; - rev = "3ed344dd784ecbbc5855e613786f3a1238823e56"; - sha256 = "00s2arfvw78d9k9fmangqlkvkmkpqzrin3g91vfab4wr8srb09dx"; + rev = "3ee5f2f1d3316e228916788b300d786bb574d337"; + sha256 = "1l5h9d92mzd35pgs0wibqfg7vbl771lwnvdlcsyhf6999khn5dzv"; }; spirv-tools = fetchFromGitHub { owner = "KhronosGroup"; repo = "SPIRV-Tools"; - rev = "323a81fc5e30e43a04e5e22af4cba98ca2a161e6"; - sha256 = "1kwyh95l02w3v1ra55c836wayzw8d0m14ab7wf0ynhhyp3k2p9hv"; + rev = "b63f0e5ed3e818870968ebf6af73317127fd07b0"; + sha256 = "1chv30azfp76nha428ivg4ixrij6d8pxj5kn3jam87gmkmgc9zhm"; }; spirv-headers = fetchFromGitHub { owner = "KhronosGroup"; repo = "SPIRV-Headers"; - rev = "204cd131c42b90d129073719f2766293ce35c081"; - sha256 = "1gp0mlbfccqnalaix97jxsa5i337xyzyr55wgssapy56p0q04wv2"; + rev = "979924c8bc839e4cb1b69d03d48398551f369ce7"; + sha256 = "07vyjlblpm4zhfds612h86lnz0qvrj5qqw5z2zzfa3m9fax7cm85"; }; in stdenv.mkDerivation rec { pname = "shaderc"; - version = "2019.1"; + version = "2020.2"; outputs = [ "out" "lib" "bin" "dev" "static" ]; @@ -33,7 +33,7 @@ in stdenv.mkDerivation rec { owner = "google"; repo = "shaderc"; rev = "v${version}"; - sha256 = "0x514rpignnb4vvl7wmijfakqc59986knjw3dh1zx0ah42xa7x37"; + sha256 = "1sxz8872x3rdlrhmbn83r1vniq4j51jnk0ka3447fq68il4myf1w"; }; patchPhase = '' @@ -52,7 +52,7 @@ in stdenv.mkDerivation rec { meta = with stdenv.lib; { inherit (src.meta) homepage; - description = "A collection of tools, libraries and tests for shader compilation."; + description = "A collection of tools, libraries and tests for shader compilation"; license = [ licenses.asl20 ]; }; } diff --git a/pkgs/development/compilers/stalin/default.nix b/pkgs/development/compilers/stalin/default.nix index 430bc251b4b..e37b207b4f2 100644 --- a/pkgs/development/compilers/stalin/default.nix +++ b/pkgs/development/compilers/stalin/default.nix @@ -37,7 +37,7 @@ stdenv.mkDerivation rec { meta = { homepage = "http://www.ece.purdue.edu/~qobi/software.html"; license = stdenv.lib.licenses.gpl2Plus; - description = "Stalin, an optimizing Scheme compiler"; + description = "An optimizing Scheme compiler"; maintainers = [ ]; platforms = ["i686-linux"]; # doesn't want to work on 64-bit platforms diff --git a/pkgs/development/compilers/swi-prolog/default.nix b/pkgs/development/compilers/swi-prolog/default.nix index 0140bb40111..dadf374d5b6 100644 --- a/pkgs/development/compilers/swi-prolog/default.nix +++ b/pkgs/development/compilers/swi-prolog/default.nix @@ -9,7 +9,7 @@ }: let - version = "8.1.15"; + version = "8.3.9"; packInstall = swiplPath: pack: ''${swiplPath}/bin/swipl -g "pack_install(${pack}, [package_directory(\"${swiplPath}/lib/swipl/pack\"), silent(true), interactive(false)])." -t "halt." ''; @@ -22,7 +22,7 @@ stdenv.mkDerivation { owner = "SWI-Prolog"; repo = "swipl-devel"; rev = "V${version}"; - sha256 = "0czbrscx2s4079nmwvipp9cnwfny16m3fpnp823llm7wyljchgvq"; + sha256 = "0ixb8pc5s7q8q0njs8is1clpvik6jhhdcwnys7m9rpwdzgi10sjz"; fetchSubmodules = true; }; diff --git a/pkgs/development/compilers/swift/default.nix b/pkgs/development/compilers/swift/default.nix index c4144532c58..2cabacadd75 100644 --- a/pkgs/development/compilers/swift/default.nix +++ b/pkgs/development/compilers/swift/default.nix @@ -245,6 +245,10 @@ stdenv.mkDerivation { --replace usr "$PREFIX" substituteInPlace swift-corelibs-xctest/build_script.py \ --replace usr "$PREFIX" + substituteInPlace swift-corelibs-foundation/CoreFoundation/PlugIn.subproj/CFBundle_InfoPlist.c \ + --replace "if !TARGET_OS_ANDROID" "if TARGET_OS_MAC || TARGET_OS_BSD" + substituteInPlace swift-corelibs-foundation/CoreFoundation/PlugIn.subproj/CFBundle_Resources.c \ + --replace "if !TARGET_OS_ANDROID" "if TARGET_OS_MAC || TARGET_OS_BSD" ''; configurePhase = '' diff --git a/pkgs/development/compilers/x11basic/default.nix b/pkgs/development/compilers/x11basic/default.nix index cc4788e3ce0..9bf6b3d2874 100644 --- a/pkgs/development/compilers/x11basic/default.nix +++ b/pkgs/development/compilers/x11basic/default.nix @@ -38,7 +38,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "http://x11-basic.sourceforge.net/"; - description = "A Basic interpreter and compiler with graphics capabilities."; + description = "A Basic interpreter and compiler with graphics capabilities"; license = licenses.gpl2; maintainers = with maintainers; [ edwtjo ]; platforms = platforms.unix; diff --git a/pkgs/development/compilers/yosys/default.nix b/pkgs/development/compilers/yosys/default.nix index c3185ca4e0e..dcb32690eb5 100644 --- a/pkgs/development/compilers/yosys/default.nix +++ b/pkgs/development/compilers/yosys/default.nix @@ -16,13 +16,13 @@ stdenv.mkDerivation rec { pname = "yosys"; - version = "2020.08.22"; + version = "2020.10.20"; src = fetchFromGitHub { owner = "YosysHQ"; repo = "yosys"; - rev = "12132b6850747aec99715fdfa3184fe3ebefa015"; - sha256 = "1v6x1y2f3r8vi7pnkgx374rrv02xgmg9yg23f61n7d1v2rd6y5cc"; + rev = "06347b119b08257eff37cdd10ed802e794c1a3cf"; + sha256 = "07058r8095192gwkiy2yyvj9vxv09fcw9bqi2b39wn85lh5kx2k2"; }; enableParallelBuilding = true; diff --git a/pkgs/development/compilers/zulu/8.nix b/pkgs/development/compilers/zulu/8.nix index 8df1c05d8b8..bea32475f9a 100644 --- a/pkgs/development/compilers/zulu/8.nix +++ b/pkgs/development/compilers/zulu/8.nix @@ -1,6 +1,6 @@ { stdenv, lib, fetchurl, unzip, makeWrapper, setJavaClassPath , zulu, glib, libxml2, libav_0_8, ffmpeg_3, libxslt, libGL, alsaLib -, fontconfig, freetype, gnome2, cairo, gdk-pixbuf, atk, xorg +, fontconfig, freetype, pango, gtk2, cairo, gdk-pixbuf, atk, xorg , swingSupport ? true }: let @@ -16,8 +16,8 @@ let libraries = [ stdenv.cc.libc glib libxml2 libav_0_8 ffmpeg_3 libxslt libGL - xorg.libXxf86vm alsaLib fontconfig freetype gnome2.pango - gnome2.gtk cairo gdk-pixbuf atk + xorg.libXxf86vm alsaLib fontconfig freetype pango + gtk2 cairo gdk-pixbuf atk ] ++ (lib.optionals swingSupport (with xorg; [ xorg.libX11 xorg.libXext xorg.libXtst xorg.libXi xorg.libXp xorg.libXt xorg.libXrender stdenv.cc.cc diff --git a/pkgs/development/compilers/zulu/default.nix b/pkgs/development/compilers/zulu/default.nix index 151a9e5f1d2..73e7bd7d338 100644 --- a/pkgs/development/compilers/zulu/default.nix +++ b/pkgs/development/compilers/zulu/default.nix @@ -1,6 +1,6 @@ { stdenv, lib, fetchurl, unzip, makeWrapper, setJavaClassPath , zulu, glib, libxml2, libav_0_8, ffmpeg_3, libxslt, libGL, alsaLib -, fontconfig, freetype, gnome2, cairo, gdk-pixbuf, atk, xorg, zlib +, fontconfig, freetype, pango, gtk2, cairo, gdk-pixbuf, atk, xorg, zlib , swingSupport ? true }: let @@ -16,8 +16,8 @@ let libraries = [ stdenv.cc.libc glib libxml2 libav_0_8 ffmpeg_3 libxslt libGL - xorg.libXxf86vm alsaLib fontconfig freetype gnome2.pango - gnome2.gtk cairo gdk-pixbuf atk zlib + xorg.libXxf86vm alsaLib fontconfig freetype pango + gtk2 cairo gdk-pixbuf atk zlib ] ++ (lib.optionals swingSupport (with xorg; [ xorg.libX11 xorg.libXext xorg.libXtst xorg.libXi xorg.libXp xorg.libXt xorg.libXrender stdenv.cc.cc diff --git a/pkgs/development/go-modules/generic/default.nix b/pkgs/development/go-modules/generic/default.nix index 7db4992d1d6..1549c83234a 100644 --- a/pkgs/development/go-modules/generic/default.nix +++ b/pkgs/development/go-modules/generic/default.nix @@ -47,10 +47,6 @@ let removeExpr = refs: ''remove-references-to ${lib.concatMapStrings (ref: " -t ${ref}") refs}''; - deleteFlag = if deleteVendor then "true" else "false"; - - vendCommand = if runVend then "${vend}/bin/vend" else "false"; - go-modules = if vendorSha256 != null then go.stdenv.mkDerivation (let modArgs = { name = "${name}-go-modules"; @@ -81,27 +77,26 @@ let buildPhase = args.modBuildPhase or '' runHook preBuild - - if [ ${deleteFlag} == "true" ]; then - if [ ! -d vendor ]; then - echo "vendor folder does not exist, 'deleteVendor' is not needed" - exit 10 - else - rm -rf vendor - fi + '' + lib.optionalString (deleteVendor == true) '' + if [ ! -d vendor ]; then + echo "vendor folder does not exist, 'deleteVendor' is not needed" + exit 10 + else + rm -rf vendor fi - + '' + '' if [ -d vendor ]; then echo "vendor folder exists, please set 'vendorSha256 = null;' in your expression" exit 10 fi - if [ ${vendCommand} != "false" ]; then - echo running vend to rewrite vendor folder - ${vendCommand} - else - go mod vendor - fi + ${if runVend then '' + echo "running 'vend' to rewrite vendor folder" + ${vend}/bin/vend + '' else '' + go mod vendor + ''} + mkdir -p vendor runHook postBuild diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index 559e2879fa6..1e694a8801b 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -77,6 +77,15 @@ self: super: { hinotify = if pkgs.stdenv.isLinux then self.hinotify else self.fsnotify; }; + # Backport fix for bash: compgen: command not found + # which happens in nix-shell when a non-interactive bash is on PATH + # PR to master: https://github.com/pcapriotti/optparse-applicative/pull/408 + optparse-applicative = appendPatch super.optparse-applicative (pkgs.fetchpatch { + name = "optparse-applicative-0.15.1-hercules-ci-compgen.diff"; + url = "https://github.com/hercules-ci/optparse-applicative/compare/0.15.1...hercules-ci:0.15.1-nixpkgs-compgen.diff"; + sha256 = "1bcp6b7gvc8pqbn1n1ybhizkkl5if7hk9ipgl746vk08v0d3xxql"; + }); + # Fix test trying to access /home directory shell-conduit = overrideCabal super.shell-conduit (drv: { postPatch = "sed -i s/home/tmp/ test/Spec.hs"; @@ -137,6 +146,14 @@ self: super: { then addBuildDepend super.halive pkgs.darwin.apple_sdk.frameworks.AppKit else super.halive; + # Test suite fails due golden tests checking text representation + # of normalized dhall expressions, and newer dhall versions format + # differently. + hpack-dhall = + if pkgs.lib.versionOlder "0.5.2" super.hpack-dhall.version + then throw "Drop dontCheck override for hpack-dhall > 0.5.2" + else dontCheck super.hpack-dhall; + barbly = addBuildDepend super.barbly pkgs.darwin.apple_sdk.frameworks.AppKit; # Hakyll's tests are broken on Darwin (3 failures); and they require util-linux @@ -375,7 +392,9 @@ self: super: { tickle = dontCheck super.tickle; tpdb = dontCheck super.tpdb; translatable-intset = dontCheck super.translatable-intset; - trifecta = if pkgs.stdenv.hostPlatform.isAarch64 then dontCheck super.trifecta else super.trifecta; # affected by this bug https://gitlab.haskell.org/ghc/ghc/-/issues/15275#note_295461 + # Aarch64 affected by this bug https://gitlab.haskell.org/ghc/ghc/-/issues/15275#note_295461 + # Darwin https://hydra.nixos.org/build/129070963/nixlog/1 + trifecta = if (pkgs.stdenv.hostPlatform.isAarch64 || pkgs.stdenv.isDarwin) then dontCheck super.trifecta else super.trifecta; ua-parser = dontCheck super.ua-parser; unagi-chan = dontCheck super.unagi-chan; wai-logger = dontCheck super.wai-logger; @@ -675,7 +694,7 @@ self: super: { postPatch = '' substituteInPlace conf.py --replace "'.md': CommonMarkParser," "" ''; - nativeBuildInputs = with pkgs.buildPackages.pythonPackages; [ sphinx recommonmark sphinx_rtd_theme ]; + nativeBuildInputs = with pkgs.buildPackages.python3Packages; [ sphinx recommonmark sphinx_rtd_theme ]; makeFlags = [ "html" ]; installPhase = '' mv _build/html $out @@ -923,7 +942,7 @@ self: super: { dhall-json = generateOptparseApplicativeCompletions ["dhall-to-json" "dhall-to-yaml"] super.dhall-json; dhall-nix = generateOptparseApplicativeCompletion "dhall-to-nix" ( super.dhall-nix.overrideScope (self: super: { - dhall = super.dhall_1_35_0; + dhall = super.dhall_1_36_0; repline = self.repline_0_4_0_0; haskeline = self.haskeline_0_8_1_0; })); @@ -1213,6 +1232,7 @@ self: super: { hie-bios = dontCheck super.hie-bios_0_7_1; lsp-test = dontCheck self.lsp-test_0_11_0_7; })); + implicit-hie-cradle = super.implicit-hie-cradle.override { hie-bios = dontCheck super.hie-bios_0_7_1; }; # hasn‘t bumped upper bounds # upstream: https://github.com/obsidiansystems/which/pull/6 @@ -1305,10 +1325,6 @@ self: super: { # Upstream issue: https://github.com/kowainik/trial/issues/62 trial = doJailbreak super.trial; - # 2020-06-24: Tests are broken in hackage distribution. - # See: https://github.com/kowainik/stan/issues/316 - stan = dontCheck super.stan; - # 2020-06-24: Tests are broken in hackage distribution. # See: https://github.com/robstewart57/rdf4h/issues/39 rdf4h = dontCheck super.rdf4h; @@ -1376,12 +1392,6 @@ self: super: { # https://github.com/jgm/commonmark-hs/issues/55 commonmark-extensions = dontCheck super.commonmark-extensions; - - # 2020-10-11: reflex-dom-pandoc and neuron require skylighting >= 9, which we - # can‘t support, because there is no pandoc release compatible with this. - reflex-dom-pandoc = doJailbreak super.reflex-dom-pandoc; - neuron = doJailbreak super.neuron; - # Testsuite trying to run `which haskeline-examples-Test` haskeline_0_8_1_0 = dontCheck super.haskeline_0_8_1_0; @@ -1453,25 +1463,27 @@ self: super: { cryptonite = doDistribute self.cryptonite_0_27; # We want the latest version of Pandoc. + skylighting = doDistribute super.skylighting_0_10_0_3; + skylighting-core = doDistribute super.skylighting-core_0_10_0_3; hslua = doDistribute self.hslua_1_1_2; jira-wiki-markup = doDistribute self.jira-wiki-markup_1_3_2; - pandoc = doDistribute self.pandoc_2_10_1; - pandoc-citeproc = doDistribute self.pandoc-citeproc_0_17_0_2; - pandoc-types = doDistribute self.pandoc-types_1_21; + pandoc = doDistribute self.pandoc_2_11_0_2; + # jailbreaking pandoc-citeproc because it has not bumped upper bound on pandoc + pandoc-citeproc = doJailbreak (doDistribute self.pandoc-citeproc_0_17_0_2); + pandoc-types = doDistribute self.pandoc-types_1_22; rfc5051 = doDistribute self.rfc5051_0_2; - # Upstream forgot to change the Cabal version bounds in the test suite. - # See: https://github.com/jaspervdj/stylish-haskell/pull/297 - # Will be fixed whenever they next bump the version number - stylish-haskell = appendPatch super.stylish-haskell (pkgs.fetchpatch { - url = "https://github.com/jaspervdj/stylish-haskell/commit/9550aa1cd177aa6fe271d075177109d66a79e67f.patch"; - sha256 = "1ffnbd2s4fx0ylnnlcyyag119yxb32p5r20b38l39lsa0jwv229f"; - }); - # The test suite attempts to read `/etc/resolv.conf`, which doesn't work in the sandbox. domain-auth = dontCheck super.domain-auth; # INSERT NEW OVERRIDES ABOVE THIS LINE + # stack-2.5.1 needs a more current version of pantry to compile + pantry = self.pantry_0_5_1_3; + + # Too tight version bounds, see https://github.com/haskell-hvr/microaeson/pull/4 + microaeson = doJailbreak super.microaeson; + + # haskell-language-server needs a more current version of pantry to compile } // (let inherit (self) hls-ghcide hls-brittany; hlsScopeOverride = self: super: { diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix index 5b476882943..047c5ba481f 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-8.10.x.nix @@ -66,7 +66,7 @@ self: super: { unliftio-core = doJailbreak super.unliftio-core; # Use the latest version to fix the build. - dhall = self.dhall_1_35_0; + dhall = self.dhall_1_36_0; lens = self.lens_4_19_2; optics = self.optics_0_3; optics-core = self.optics-core_0_3_0_1; @@ -129,4 +129,7 @@ self: super: { executableHaskellDepends = drv.executableToolDepends or [] ++ [ self.repline ]; })); + # Break out of "Cabal < 3.2" constraint. + stylish-haskell = doJailbreak super.stylish-haskell; + } diff --git a/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix b/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix index 2a3a0b3bc14..88f935c3b6d 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-9.0.x.nix @@ -43,4 +43,72 @@ self: super: { unix = null; xhtml = null; + # Take the 3.4.x release candidate. + cabal-install = assert super.cabal-install.version == "3.2.0.0"; + overrideCabal super.cabal-install (drv: { + postUnpack = "sourceRoot+=/cabal-install; echo source root reset to $sourceRoot"; + version = "cabal-install-3.4.0.0-rc4"; + editedCabalFile = null; + src = pkgs.fetchgit { + url = "git://github.com/haskell/cabal.git"; + rev = "cabal-install-3.4.0.0-rc4"; + sha256 = "049hllk1d8jid9yg70hmcsdgb0n7hm24p39vavllaahfb0qfimrk"; + }; + }); + + # Jailbreaks & Version Updates + async = doJailbreak super.async; + ChasingBottoms = markBrokenVersion "1.3.1.9" super.ChasingBottoms; + dec = doJailbreak super.dec; + ed25519 = doJailbreak super.ed25519; + hashable = overrideCabal (doJailbreak (dontCheck super.hashable)) (drv: { postPatch = "sed -i -e 's,integer-gmp .*<1.1,integer-gmp < 2,' hashable.cabal"; }); + hashable-time = doJailbreak super.hashable-time; + integer-logarithms = overrideCabal (doJailbreak super.integer-logarithms) (drv: { postPatch = "sed -i -e 's,integer-gmp <1.1,integer-gmp < 2,' integer-logarithms.cabal"; }); + lukko = doJailbreak super.lukko; + parallel = doJailbreak super.parallel; + primitive = doJailbreak super.primitive_0_7_1_0; + regex-posix = doJailbreak super.regex-posix; + resolv = doJailbreak super.resolv; + singleton-bool = doJailbreak super.singleton-bool; + split = doJailbreak super.split; + splitmix = self.splitmix_0_1_0_3; + tar = doJailbreak super.tar; + th-abstraction = self.th-abstraction_0_4_0_0; + time-compat = doJailbreak super.time-compat; + vector = doJailbreak (dontCheck super.vector); + zlib = doJailbreak super.zlib; + + # Apply patches from head.hackage. + alex = appendPatch (dontCheck super.alex) (pkgs.fetchpatch { + url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/master/patches/alex-3.2.5.patch"; + sha256 = "0q8x49k3jjwyspcmidwr6b84s4y43jbf4wqfxfm6wz8x2dxx6nwh"; + }); + doctest = appendPatch (dontCheck (doJailbreak super.doctest_0_17)) (pkgs.fetchpatch { + url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/master/patches/doctest-0.17.patch"; + sha256 = "16s2jcbk9hsww38i2wzxghbf0zpp5dc35hp6rd2n7d4z5xfavp62"; + }); + generic-deriving = appendPatch (doJailbreak super.generic-deriving) (pkgs.fetchpatch { + url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/master/patches/generic-deriving-1.13.1.patch"; + sha256 = "0z85kiwhi5p2wiqwyym0y8q8qrcifp125x5vm0n4482lz41kmqds"; + }); + language-haskell-extract = appendPatch (doJailbreak super.language-haskell-extract) (pkgs.fetchpatch { + url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/master/patches/language-haskell-extract-0.2.4.patch"; + sha256 = "0rgzrq0513nlc1vw7nw4km4bcwn4ivxcgi33jly4a7n3c1r32v1f"; + }); + QuickCheck = appendPatch super.QuickCheck_2_14_1 (pkgs.fetchpatch { + url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/master/patches/QuickCheck-2.14.1.patch"; + sha256 = "0n89nx95w353h4dzala57gb0y7hx4wbkv5igs89dza50p7ybq9an"; + }); + regex-base = appendPatch (doJailbreak super.regex-base) (pkgs.fetchpatch { + url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/master/patches/regex-base-0.94.0.0.patch"; + sha256 = "0k5fglbl7nnhn8400c4cpnflxcbj9p3xi5prl9jfmszr31jwdy5d"; + }); + syb = appendPatch (dontCheck super.syb) (pkgs.fetchpatch { + url = "https://gitlab.haskell.org/ghc/head.hackage/-/raw/master/patches/syb-0.7.1.patch"; + sha256 = "1407r8xv6bfnmpbw7glfh4smi76a2fc9pkq300c3d9f575708zqr"; + }); + + # The test suite depends on ChasingBottoms, which is broken with ghc-9.0.x. + unordered-containers = dontCheck super.unordered-containers; + } diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml index fe19ca322a3..8a2e787038d 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml @@ -72,7 +72,10 @@ default-package-overrides: # gi-gdkx11-4.x requires gtk-4.x, which is still under development and # not yet available in Nixpkgs - gi-gdkx11 < 4 - # LTS Haskell 16.17 + # haskell-language-server 0.5.0.0 doesn't accept newer versions + - fourmolu ==0.2.* + - refinery ==0.2.* + # LTS Haskell 16.19 - abstract-deque ==0.3 - abstract-par ==0.3.3 - AC-Angle ==1.0 @@ -80,7 +83,7 @@ default-package-overrides: - ace ==0.6 - action-permutations ==0.0.0.1 - active ==0.2.0.14 - - ad ==4.4 + - ad ==4.4.1 - adjunctions ==4.4 - adler32 ==0.1.2.0 - advent-of-code-api ==0.2.7.0 @@ -88,7 +91,7 @@ default-package-overrides: - aeson-attoparsec ==0.0.0 - aeson-better-errors ==0.9.1.0 - aeson-casing ==0.2.0.0 - - aeson-combinators ==0.0.2.1 + - aeson-combinators ==0.0.3.0 - aeson-compat ==0.3.9 - aeson-default ==0.9.1.0 - aeson-diff ==1.1.0.9 @@ -298,7 +301,7 @@ default-package-overrides: - bech32 ==1.0.2 - bech32-th ==1.0.2 - bench ==1.0.12 - - benchpress ==0.2.2.14 + - benchpress ==0.2.2.15 - between ==0.11.0.0 - bibtex ==0.1.0.6 - bifunctors ==5.5.7 @@ -378,14 +381,14 @@ default-package-overrides: - bytestring-mmap ==0.2.2 - bytestring-strict-builder ==0.4.5.3 - bytestring-to-vector ==0.3.0.1 - - bytestring-tree-builder ==0.2.7.4 + - bytestring-tree-builder ==0.2.7.5 - bz2 ==1.0.0.1 - bzlib-conduit ==0.3.0.2 - c2hs ==0.28.6 - cabal-appimage ==0.3.0.0 - cabal-debian ==5.0.3 - cabal-doctest ==1.0.8 - - cabal-rpm ==2.0.6 + - cabal-rpm ==2.0.7 - cache ==0.1.3.0 - cacophony ==0.10.1 - calendar-recycling ==0.0.0.1 @@ -489,7 +492,7 @@ default-package-overrides: - concurrent-split ==0.0.1.1 - concurrent-supply ==0.1.8 - cond ==0.4.1.1 - - conduit ==1.3.2.1 + - conduit ==1.3.3 - conduit-algorithms ==0.0.11.0 - conduit-combinators ==1.3.0 - conduit-concurrent-map ==0.1.1 @@ -519,7 +522,7 @@ default-package-overrides: - convertible ==1.1.1.0 - cookie ==0.4.5 - core-data ==0.2.1.8 - - core-program ==0.2.4.5 + - core-program ==0.2.5.0 - core-text ==0.2.3.6 - countable ==1.0 - cpio-conduit ==0.7.0 @@ -603,7 +606,7 @@ default-package-overrides: - data-or ==1.0.0.5 - data-ordlist ==0.4.7.0 - data-ref ==0.0.2 - - data-reify ==0.6.2 + - data-reify ==0.6.3 - data-serializer ==0.3.4.1 - data-textual ==0.3.0.3 - data-tree-print ==0.1.0.2 @@ -620,7 +623,7 @@ default-package-overrides: - declarative ==0.5.3 - deepseq-generics ==0.2.0.0 - deepseq-instances ==0.1.0.1 - - deferred-folds ==0.9.10.1 + - deferred-folds ==0.9.11 - dejafu ==2.3.0.1 - dense-linear-algebra ==0.1.0.0 - depq ==0.4.1.0 @@ -803,7 +806,7 @@ default-package-overrides: - flac-picture ==0.1.2 - flags-applicative ==0.1.0.2 - flat ==0.4.4 - - flat-mcmc ==1.5.1 + - flat-mcmc ==1.5.2 - FloatingHex ==0.4 - floatshow ==0.2.4 - flow ==1.0.21 @@ -1011,7 +1014,7 @@ default-package-overrides: - hasql-pool ==0.5.2 - hasql-transaction ==1.0.0.1 - hasty-hamiltonian ==1.3.3 - - HaTeX ==3.22.2.0 + - HaTeX ==3.22.3.0 - HaXml ==1.25.5 - haxr ==3000.11.4.1 - HCodecs ==0.5.2 @@ -1027,10 +1030,10 @@ default-package-overrides: - hedgehog-fakedata ==0.0.1.3 - hedgehog-fn ==1.0 - hedgehog-quickcheck ==0.1.1 - - hedis ==0.12.14 + - hedis ==0.12.15 - here ==1.2.13 - heredoc ==0.2.0.0 - - heterocephalus ==1.0.5.3 + - heterocephalus ==1.0.5.4 - hexml ==0.3.4 - hexml-lens ==0.2.1 - hexpat ==0.20.13 @@ -1088,11 +1091,11 @@ default-package-overrides: - HSlippyMap ==3.0.1 - hslogger ==1.3.1.0 - hslua ==1.0.3.2 - - hslua-aeson ==1.0.3 + - hslua-aeson ==1.0.3.1 - hslua-module-doclayout ==0.1.0 - - hslua-module-system ==0.2.2 + - hslua-module-system ==0.2.2.1 - hslua-module-text ==0.2.1 - - HsOpenSSL ==0.11.4.19 + - HsOpenSSL ==0.11.4.20 - hsp ==0.10.0 - hspec ==2.7.4 - hspec-attoparsec ==0.1.0.2 @@ -1138,7 +1141,7 @@ default-package-overrides: - http-client-tls ==0.3.5.3 - http-common ==0.8.2.1 - http-conduit ==2.3.7.3 - - http-date ==0.0.9 + - http-date ==0.0.10 - http-directory ==0.1.8 - http-download ==0.2.0.0 - httpd-shed ==0.4.1.1 @@ -1153,7 +1156,7 @@ default-package-overrides: - hunit-dejafu ==2.0.0.4 - hvect ==0.4.0.0 - hvega ==0.9.1.0 - - hw-balancedparens ==0.4.1.0 + - hw-balancedparens ==0.4.1.1 - hw-bits ==0.7.2.1 - hw-conduit ==0.2.1.0 - hw-conduit-merges ==0.2.1.0 @@ -1209,7 +1212,7 @@ default-package-overrides: - influxdb ==1.7.1.6 - ini ==0.4.1 - inj ==1.0 - - inline-c ==0.9.1.2 + - inline-c ==0.9.1.3 - inline-c-cpp ==0.4.0.2 - inliterate ==0.1.0 - insert-ordered-containers ==0.2.3.1 @@ -1244,7 +1247,7 @@ default-package-overrides: - ipynb ==0.1.0.1 - ipython-kernel ==0.10.2.1 - irc ==0.6.1.0 - - irc-client ==1.1.1.1 + - irc-client ==1.1.2.0 - irc-conduit ==0.3.0.4 - irc-ctcp ==0.1.3.0 - isbn ==1.0.0.0 @@ -1648,7 +1651,7 @@ default-package-overrides: - password-instances ==2.0.0.1 - path ==0.7.0 - path-extra ==0.2.0 - - path-io ==1.6.0 + - path-io ==1.6.1 - path-pieces ==0.2.1 - path-text-utf8 ==0.0.1.6 - pathtype ==0.8.1.1 @@ -1855,7 +1858,7 @@ default-package-overrides: - regex-compat ==0.95.2.0 - regex-compat-tdfa ==0.95.1.4 - regex-pcre ==0.95.0.0 - - regex-pcre-builtin ==0.95.1.2.8.43 + - regex-pcre-builtin ==0.95.1.3.8.43 - regex-posix ==0.96.0.0 - regex-tdfa ==1.3.1.0 - regex-with-pcre ==1.1.0.0 @@ -1954,7 +1957,6 @@ default-package-overrides: - serialise ==0.2.3.0 - servant ==0.16.2 - servant-auth ==0.3.2.0 - - servant-auth-docs ==0.2.10.0 - servant-auth-server ==0.4.5.1 - servant-auth-swagger ==0.2.10.0 - servant-blaze ==0.9 @@ -2010,7 +2012,7 @@ default-package-overrides: - signal ==0.1.0.4 - silently ==1.2.5.1 - simple-affine-space ==0.1.1 - - simple-cabal ==0.1.2 + - simple-cabal ==0.1.3 - simple-cmd ==0.2.2 - simple-cmd-args ==0.1.6 - simple-log ==0.9.12 @@ -2097,7 +2099,7 @@ default-package-overrides: - storablevector ==0.2.13.1 - stratosphere ==0.53.0 - streaming ==0.2.3.0 - - streaming-bytestring ==0.1.6 + - streaming-bytestring ==0.1.7 - streaming-commons ==0.2.2.1 - streamly ==0.7.2 - streamly-bytestring ==0.1.2 @@ -2160,9 +2162,9 @@ default-package-overrides: - tar-conduit ==0.3.2 - tardis ==0.4.1.0 - tasty ==1.2.3 - - tasty-ant-xml ==1.1.6 + - tasty-ant-xml ==1.1.7 - tasty-dejafu ==2.0.0.6 - - tasty-discover ==4.2.1 + - tasty-discover ==4.2.2 - tasty-expected-failure ==0.11.1.2 - tasty-golden ==2.3.3.2 - tasty-hedgehog ==1.0.0.2 @@ -2170,7 +2172,7 @@ default-package-overrides: - tasty-hunit ==0.10.0.2 - tasty-kat ==0.0.3 - tasty-leancheck ==0.0.1 - - tasty-lua ==0.2.3 + - tasty-lua ==0.2.3.1 - tasty-program ==1.0.5 - tasty-quickcheck ==0.10.1.1 - tasty-rerun ==1.1.17 @@ -2224,8 +2226,8 @@ default-package-overrides: - th-desugar ==1.10 - th-env ==0.1.0.2 - these ==1.1.1.1 - - these-lens ==1.0.0.1 - - these-optics ==1 + - these-lens ==1.0.1.1 + - these-optics ==1.0.1.1 - th-expand-syns ==0.4.6.0 - th-extras ==0.0.0.4 - th-lift ==0.8.2 @@ -2301,7 +2303,7 @@ default-package-overrides: - type-equality ==1 - type-errors ==0.2.0.0 - type-errors-pretty ==0.0.1.1 - - type-fun ==0.1.1 + - type-fun ==0.1.2 - type-hint ==0.1 - type-level-integers ==0.0.1 - type-level-kv-list ==1.1.0 @@ -2309,7 +2311,7 @@ default-package-overrides: - type-map ==0.1.6.0 - type-natural ==0.8.3.1 - typenums ==0.1.2.1 - - type-of-html ==1.5.1.0 + - type-of-html ==1.5.2.0 - type-of-html-static ==0.1.0.2 - type-operators ==0.2.0.0 - typerep-map ==0.3.3.0 @@ -2328,7 +2330,7 @@ default-package-overrides: - unexceptionalio-trans ==0.5.1 - unicode ==0.0.1.1 - unicode-show ==0.1.0.4 - - unicode-transforms ==0.3.7 + - unicode-transforms ==0.3.7.1 - unification-fd ==0.10.0.1 - union-find ==0.2 - uniplate ==1.6.12 @@ -2359,7 +2361,7 @@ default-package-overrides: - urbit-hob ==0.3.3 - uri-bytestring ==0.3.2.2 - uri-bytestring-aeson ==0.1.0.8 - - uri-encode ==1.5.0.6 + - uri-encode ==1.5.0.7 - url ==2.1.3 - users ==0.5.0.0 - utf8-conversions ==0.1.0.4 @@ -2499,7 +2501,7 @@ default-package-overrides: - xturtle ==0.2.0.0 - xxhash-ffi ==0.2.0.0 - yaml ==0.11.5.0 - - yamlparse-applicative ==0.1.0.1 + - yamlparse-applicative ==0.1.0.2 - yesod ==1.6.1.0 - yesod-auth ==1.6.10 - yesod-auth-fb ==1.10.1 @@ -2875,6 +2877,7 @@ broken-packages: - AC-VanillaArray - AC-Vector - AC-Vector-Fancy + - acc - accelerate - accelerate-arithmetic - accelerate-fftw @@ -2944,6 +2947,7 @@ broken-packages: - aern2-mp - aern2-real - aeson-applicative + - aeson-commit - aeson-decode - aeson-diff-generic - aeson-filthy @@ -3050,6 +3054,9 @@ broken-packages: - aop-prelude - aosd - apart + - apecs-gloss + - apecs-physics + - apecs-physics-gloss - apecs-stm - apelsin - api-builder @@ -3092,6 +3099,7 @@ broken-packages: - arbor-monad-metric-datadog - arbor-postgres - arbtt + - arch-hs - archive-libarchive - archive-tar-bytestring - archiver @@ -3272,6 +3280,7 @@ broken-packages: - Bang - bank-holiday-usa - banwords + - barbies-th - barchart - barcodes-code128 - barecheck @@ -3279,6 +3288,7 @@ broken-packages: - barrie - barrier - barrier-monad + - base-compat-migrate - base-encoding - base-feature-macros - base-generics @@ -3505,6 +3515,7 @@ broken-packages: - blunt - bno055-haskell - bogre-banana + - boilerplate - bolt - boltzmann-brain - bond @@ -3551,6 +3562,7 @@ broken-packages: - brotli-conduit - brotli-streams - browscap + - bsd-sysctl - bson - bson-generic - bson-generics @@ -3565,6 +3577,7 @@ broken-packages: - BufferedSocket - buffet - buffon + - bugsnag-haskell - bugzilla - build - buildable @@ -3613,6 +3626,7 @@ broken-packages: - c10k - c2ats - cabal-audit + - cabal-auto-expose - cabal-bundle-clib - cabal-cache - cabal-cargs @@ -3629,6 +3643,7 @@ broken-packages: - cabal-install-bundle - cabal-install-ghc72 - cabal-install-ghc74 + - cabal-install-parsers - cabal-meta - cabal-mon - cabal-nirvana @@ -3653,6 +3668,7 @@ broken-packages: - cabin - cabocha - cached + - caching - cacophony - cafeteria-prelude - caffegraph @@ -3787,6 +3803,7 @@ broken-packages: - chessIO - chevalier-common - chiasma + - chiphunk - chitauri - Chitra - choose @@ -3852,6 +3869,7 @@ broken-packages: - clckwrks-plugin-mailinglist - clckwrks-plugin-media - clckwrks-plugin-page + - clckwrks-plugin-redirect - clckwrks-theme-bootstrap - clckwrks-theme-clckwrks - clckwrks-theme-geo-bootstrap @@ -3906,6 +3924,7 @@ broken-packages: - cmv - cnc-spec-compiler - co-log + - co-log-polysemy-formatting - co-log-sys - Coadjute - coalpit @@ -4040,6 +4059,7 @@ broken-packages: - confide - config-parser - config-select + - config-value-getopt - ConfigFileTH - Configger - configifier @@ -4226,6 +4246,7 @@ broken-packages: - cuboid - cuckoo - cudd + - curl-runnings - currency-codes - currency-convert - curry-frontend @@ -4235,7 +4256,6 @@ broken-packages: - curve25519 - curves - custom-prelude - - cut-the-crap - CV - cv-combinators - cypher @@ -4444,6 +4464,8 @@ broken-packages: - dhall-check - dhall-docs - dhall-fly + - dhall-nix + - dhall-nixpkgs - dhall-text - dhall-to-cabal - dhall-yaml @@ -4495,6 +4517,7 @@ broken-packages: - dingo-core - dingo-example - dingo-widgets + - diohsc - diophantine - diplomacy - diplomacy-server @@ -4506,6 +4529,7 @@ broken-packages: - directed-cubical - direm - dirfiles + - dirichlet - dirtree - discogs-haskell - discord-gateway @@ -4844,6 +4868,7 @@ broken-packages: - exference - exherbo-cabal - exif + - exiftool - exinst - exinst-aeson - exinst-bytes @@ -5040,6 +5065,7 @@ broken-packages: - flaccuraterip - flamethrower - flamingra + - flashblast - flat - flat-maybe - flatbuffers @@ -5048,6 +5074,7 @@ broken-packages: - flexiwrap - flexiwrap-smallcheck - flickr + - flink-statefulfun - Flippi - flite - float-binstring @@ -5206,6 +5233,7 @@ broken-packages: - funsat - funspection - fused-effects-exceptions + - fused-effects-mwc-random - fused-effects-optics - fused-effects-random - fused-effects-readline @@ -5213,6 +5241,7 @@ broken-packages: - fused-effects-th - fusion - fusion-plugin + - futhark - futun - future - fuzzy-time-gen @@ -5367,6 +5396,7 @@ broken-packages: - gi-gtk-declarative-app-simple - gi-gtk-hs - gi-gtkosxapplication + - gi-gtksheet - gi-handy - gi-poppler - gi-wnck @@ -5548,6 +5578,8 @@ broken-packages: - graphicstools - graphmod-plugin - graphql + - graphql-client + - graphql-engine - graphql-utils - graphql-w-persistent - graphted @@ -5618,6 +5650,7 @@ broken-packages: - haar - habit - hablo + - hablog - HABQT - Hach - hack-contrib @@ -5690,6 +5723,7 @@ broken-packages: - hakyll-filestore - hakyll-images - hakyll-ogmarkup + - hakyll-process - hakyll-R - hakyll-sass - hakyll-series @@ -5707,6 +5741,7 @@ broken-packages: - halma-gui - halma-telegram-bot - halves + - ham - HaMinitel - hampp - hamsql @@ -5816,6 +5851,7 @@ broken-packages: - haskell-bitmex-client - haskell-bitmex-rest - haskell-brainfuck + - haskell-ci - haskell-cnc - haskell-coffee - haskell-compression @@ -6051,6 +6087,7 @@ broken-packages: - hdph-closure - hdr-histogram - HDRUtils + - headed-megaparsec - headergen - heapsort - heart-app @@ -6358,7 +6395,6 @@ broken-packages: - hp2any-graph - hp2any-manager - hpack-convert - - hpack-dhall - hpaco - hpaco-lib - hpage @@ -6613,7 +6649,9 @@ broken-packages: - http-client-request-modifiers - http-client-session - http-client-streams + - http-client-websockets - http-conduit-browser + - http-conduit-downloader - http-directory - http-dispatch - http-enumerator @@ -6858,6 +6896,7 @@ broken-packages: - instapaper-sender - instinct - int-multimap + - intcode - integer-pure - integreat - intel-aes @@ -6951,6 +6990,7 @@ broken-packages: - ixmonad - ixshader - iyql + - j - j2hs - jack-bindings - JackMiniMix @@ -7030,6 +7070,7 @@ broken-packages: - JSONb - jsonextfilter - JsonGrammar + - jsonifier - jsonresume - jsonrpc-conduit - jsons-to-schema @@ -7122,6 +7163,7 @@ broken-packages: - kit - kmeans-par - kmeans-vector + - kmonad - kmp-dfa - knead - knead-arithmetic @@ -7132,6 +7174,7 @@ broken-packages: - korfu - kqueue - kraken + - krank - krapsh - Kriens - krpc @@ -7334,6 +7377,7 @@ broken-packages: - libhbb - libinfluxdb - libjenkins + - libjwt-typed - liblastfm - liblawless - liblinear-enumerator @@ -7498,6 +7542,7 @@ broken-packages: - lol-typing - loli - longboi + - longshot - lookup-tables - loop-effin - loop-while @@ -7506,6 +7551,7 @@ broken-packages: - loopy - lord - lorem + - lorentz - loris - loshadka - lostcities @@ -7518,6 +7564,7 @@ broken-packages: - ls-usb - lscabal - LslPlus + - lsp - lsystem - ltext - lti13 @@ -7606,6 +7653,7 @@ broken-packages: - mangopay - manifold-random - manifolds + - Map - map-exts - mapalgebra - Mapping @@ -7726,7 +7774,6 @@ broken-packages: - Michelangelo - miconix-test - micro-recursion-schemes - - microaeson - microbase - microformats2-parser - microformats2-types @@ -7779,6 +7826,7 @@ broken-packages: - mlist - mltool - mm2 + - mmsyn4 - mmtf - mmtl - mmtl-base @@ -7880,6 +7928,7 @@ broken-packages: - moo - morfette - morfeusz + - morley - morpheus-graphql-cli - morpheus-graphql-client - morphisms-functors @@ -7935,6 +7984,7 @@ broken-packages: - mu-grpc-server - mu-kafka - mu-protobuf + - mu-servant-server - MuCheck - MuCheck-Hspec - MuCheck-HUnit @@ -8025,6 +8075,9 @@ broken-packages: - nagios-plugin-ekg - nakadi-client - named-lock + - named-servant + - named-servant-client + - named-servant-server - namelist - nano-hmac - nano-md5 @@ -8182,7 +8235,9 @@ broken-packages: - NoSlow - not-gloss-examples - notcpp + - nothunks - notifications-tray-icon + - notmuch - notmuch-haskell - notmuch-web - NoTrace @@ -8206,6 +8261,7 @@ broken-packages: - numeric-ranges - numerical - numhask-array + - numhask-free - numhask-hedgehog - numhask-histogram - numhask-prelude @@ -8275,6 +8331,8 @@ broken-packages: - op - opaleye-classy - opaleye-sqlite + - open-adt + - open-adt-tutorial - open-haddock - open-pandoc - open-signals @@ -8310,6 +8368,7 @@ broken-packages: - Operads - operate-do - operational-extra + - oplang - opml-conduit - opn - optima @@ -8339,6 +8398,7 @@ broken-packages: - origami - orizentic - OrPatterns + - orthotope - osc - oscpacking - oset @@ -8519,6 +8579,9 @@ broken-packages: - perfecthash - perhaps - periodic + - periodic-client + - periodic-client-exe + - periodic-server - perm - permutation - permutations @@ -8836,6 +8899,7 @@ broken-packages: - proj4-hs-bindings - project-m36 - projectile + - prolens - prolog - prolog-graph - prolog-graph-lib @@ -8874,6 +8938,7 @@ broken-packages: - pseudo-trie - PTQ - ptr + - ptr-poker - publicsuffixlistcreate - publish - pubnub @@ -8911,6 +8976,7 @@ broken-packages: - puzzle-draw - puzzle-draw-cmdline - pvd + - PyF - pyffi - pyfi - python-pickle @@ -8919,6 +8985,7 @@ broken-packages: - qd - qd-vec - qed + - qhs - qhull-simple - qif - QIO @@ -9078,6 +9145,7 @@ broken-packages: - readpyc - readshp - really-simple-xml-parser + - reanimate - reasonable-lens - record - record-aeson @@ -9101,6 +9169,7 @@ broken-packages: - reenact - Ref - ref + - ref-extras - ref-mtl - refcount - Referees @@ -9291,10 +9360,12 @@ broken-packages: - rng-utils - rob - robin + - roboservant - robots-txt - roc-cluster - roc-cluster-demo - rock + - rocksdb-haskell - rocksdb-query - roku-api - rollbar @@ -9443,6 +9514,7 @@ broken-packages: - scotty-binding-play - scotty-blaze - scotty-fay + - scotty-form - scotty-format - scotty-hastache - scotty-haxl @@ -9520,6 +9592,7 @@ broken-packages: - serv-wai - servant-aeson-specs - servant-auth-cookie + - servant-auth-docs - servant-auth-hmac - servant-auth-token - servant-auth-token-acid @@ -9528,6 +9601,7 @@ broken-packages: - servant-auth-token-persistent - servant-auth-token-rocksdb - servant-avro + - servant-client-js - servant-client-namedargs - servant-csharp - servant-db @@ -9554,6 +9628,7 @@ broken-packages: - servant-matrix-param - servant-namedargs - servant-nix + - servant-openapi3 - servant-pandoc - servant-pool - servant-postgresql @@ -9620,6 +9695,7 @@ broken-packages: - shake-cabal-build - shake-dhall - shake-extras + - shake-futhark - shake-minify - shake-pack - shake-path @@ -9671,8 +9747,10 @@ broken-packages: - sifflet - sifflet-lib - sigma-ij + - signable - signals - signed-multiset + - silkscreen - silvi - simd - simgi @@ -9998,7 +10076,6 @@ broken-packages: - stackage-types - stackage-upload - stackage2nix - - stan - standalone-derive-topdown - standalone-haddock - starling @@ -10037,7 +10114,9 @@ broken-packages: - stgi - STL - STLinkUSB + - stm-actor - stm-chunked-queues + - stm-containers - stm-firehose - stm-promise - stm-stats @@ -10738,6 +10817,7 @@ broken-packages: - Updater - uploadcare - upskirt + - urbit-airlock - ureader - urembed - uri @@ -10790,6 +10870,7 @@ broken-packages: - uuid-aeson - uuid-bytes - uuid-crypto + - uusi - uvector - uvector-algorithms - uxadt @@ -10904,6 +10985,7 @@ broken-packages: - vty-menu - vty-ui - vty-ui-extras + - vulkan-utils - waargonaut - wacom-daemon - waddle @@ -10987,9 +11069,11 @@ broken-packages: - web3 - webapi - webapp + - webauthn - WebBits - WebBits-Html - WebBits-multiplate + - webby - webcloud - WebCont - webcrank @@ -11053,6 +11137,7 @@ broken-packages: - word2vec-model - WordAlignment - wordify + - wordn - WordNet - WordNet-ghc74 - wordpass @@ -11156,6 +11241,7 @@ broken-packages: - xmonad-bluetilebranch - xmonad-contrib-bluetilebranch - xmonad-contrib-gpl + - xmonad-dbus - xmonad-eval - xmonad-vanessa - xmonad-windownames @@ -11334,6 +11420,8 @@ broken-packages: - yu-utils - yuuko - yxdb-utils + - Z-Data + - Z-IO - z3-encoding - z85 - zabt diff --git a/pkgs/development/haskell-modules/configuration-nix.nix b/pkgs/development/haskell-modules/configuration-nix.nix index c946cf6a22b..a74b1eb05cd 100644 --- a/pkgs/development/haskell-modules/configuration-nix.nix +++ b/pkgs/development/haskell-modules/configuration-nix.nix @@ -542,6 +542,7 @@ self: super: builtins.intersectAttrs super { # Break infinite recursion cycle between QuickCheck and splitmix. splitmix = dontCheck super.splitmix; + splitmix_0_1_0_3 = dontCheck super.splitmix_0_1_0_3; # Break infinite recursion cycle between tasty and clock. clock = dontCheck super.clock; @@ -645,6 +646,7 @@ self: super: builtins.intersectAttrs super { # Tests require internet http-download = dontCheck super.http-download; pantry = dontCheck super.pantry; + pantry_0_5_1_3 = dontCheck super.pantry_0_5_1_3; # gtk2hs-buildtools is listed in setupHaskellDepends, but we # need it during the build itself, too. @@ -729,9 +731,10 @@ self: super: builtins.intersectAttrs super { # break infinite recursion with base-orphans primitive = dontCheck super.primitive; + primitive_0_7_1_0 = dontCheck super.primitive_0_7_1_0; cut-the-crap = - let path = pkgs.stdenv.lib.makeBinPath [ pkgs.ffmpeg_3 ]; + let path = pkgs.stdenv.lib.makeBinPath [ pkgs.ffmpeg_3 pkgs.youtube-dl ]; in overrideCabal (addBuildTool super.cut-the-crap pkgs.makeWrapper) (_drv: { postInstall = '' wrapProgram $out/bin/cut-the-crap \ diff --git a/pkgs/development/haskell-modules/generic-builder.nix b/pkgs/development/haskell-modules/generic-builder.nix index afb0087a028..a221ce38c8a 100644 --- a/pkgs/development/haskell-modules/generic-builder.nix +++ b/pkgs/development/haskell-modules/generic-builder.nix @@ -64,6 +64,7 @@ in , patches ? null, patchPhase ? null, prePatch ? "", postPatch ? "" , preConfigure ? null, postConfigure ? null , preBuild ? null, postBuild ? null +, preHaddock ? null, postHaddock ? null , installPhase ? null, preInstall ? null, postInstall ? null , checkPhase ? null, preCheck ? null, postCheck ? null , preFixup ? null, postFixup ? null @@ -658,6 +659,8 @@ stdenv.mkDerivation ({ // optionalAttrs (args ? checkPhase) { inherit checkPhase; } // optionalAttrs (args ? preCheck) { inherit preCheck; } // optionalAttrs (args ? postCheck) { inherit postCheck; } +// optionalAttrs (args ? preHaddock) { inherit preHaddock; } +// optionalAttrs (args ? postHaddock) { inherit postHaddock; } // optionalAttrs (args ? preInstall) { inherit preInstall; } // optionalAttrs (args ? installPhase) { inherit installPhase; } // optionalAttrs (args ? postInstall) { inherit postInstall; } diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index c60cc882e98..f48e90b187b 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -1318,8 +1318,8 @@ self: { }: mkDerivation { pname = "BNFC"; - version = "2.8.3"; - sha256 = "00w8g0kn4sgjyiq4hykkz8k0kl5b5861v7d9g2021vca78gif6wl"; + version = "2.8.4"; + sha256 = "0z84qfpfm402fl0fpxcggr4jz2sn8cqgjy50r6xfx310g7xwdgnd"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ array base ]; @@ -6592,14 +6592,16 @@ self: { ({ mkDerivation, base, base-compat, GLUT, OpenGL, random }: mkDerivation { pname = "FunGEn"; - version = "1.0.1"; - sha256 = "1bal6v1ps8ha5hkz12i20vwypvbcb6s9ykr8yylh4w4ddnsdgh3r"; + version = "1.1.1"; + sha256 = "167bf5p4qcb9wj89x5i5zjjx1f7pmi6s5xbbh43ljhp1f25s9147"; + revision = "1"; + editedCabalFile = "0rgqkr95d2bssmnm4rrkrla7380vgr3isljs8jqglfjy660cynq3"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ base base-compat GLUT OpenGL random ]; executableHaskellDepends = [ base GLUT OpenGL random ]; - description = "A lightweight, cross-platform, OpenGL/GLUT-based game engine"; + description = "A lightweight, cross-platform, OpenGL-based game engine"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; broken = true; @@ -8067,8 +8069,8 @@ self: { }: mkDerivation { pname = "HDBC-postgresql"; - version = "2.3.2.7"; - sha256 = "0mfx172lrhwxx6gbqfqji8m14llng76x0mxksm3s556kakvv1cgg"; + version = "2.3.2.8"; + sha256 = "0c76di7a134xhw5pmzdjasgyqxj6gkjkj45mr4mwfrchgdg4cvil"; isLibrary = true; isExecutable = true; setupHaskellDepends = [ base Cabal ]; @@ -9705,26 +9707,6 @@ self: { }) {}; "HaTeX" = callPackage - ({ mkDerivation, base, bibtex, bytestring, containers, hashable - , matrix, parsec, prettyprinter, QuickCheck, tasty - , tasty-quickcheck, text, transformers - }: - mkDerivation { - pname = "HaTeX"; - version = "3.22.2.0"; - sha256 = "0l2csqvyxl399p6jmp8nkabsn8bh4k94wblh7qbn13q8zrmzmmzp"; - libraryHaskellDepends = [ - base bibtex bytestring containers hashable matrix parsec - prettyprinter QuickCheck text transformers - ]; - testHaskellDepends = [ - base parsec QuickCheck tasty tasty-quickcheck text - ]; - description = "The Haskell LaTeX library"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "HaTeX_3_22_3_0" = callPackage ({ mkDerivation, base, bibtex, bytestring, containers, hashable , matrix, parsec, prettyprinter, QuickCheck, tasty , tasty-quickcheck, text, transformers @@ -9742,7 +9724,6 @@ self: { ]; description = "The Haskell LaTeX library"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "HaTeX-meta" = callPackage @@ -10852,20 +10833,6 @@ self: { }) {Judy = null;}; "HsOpenSSL" = callPackage - ({ mkDerivation, base, bytestring, Cabal, network, openssl, time }: - mkDerivation { - pname = "HsOpenSSL"; - version = "0.11.4.19"; - sha256 = "0iy3qrir13kp1c7a0xwj2ngfwhqxqbc5j0vj5mi0w3arv7w0x6ds"; - setupHaskellDepends = [ base Cabal ]; - libraryHaskellDepends = [ base bytestring network time ]; - librarySystemDepends = [ openssl ]; - testHaskellDepends = [ base bytestring ]; - description = "Partial OpenSSL binding for Haskell"; - license = stdenv.lib.licenses.publicDomain; - }) {inherit (pkgs) openssl;}; - - "HsOpenSSL_0_11_4_20" = callPackage ({ mkDerivation, base, bytestring, Cabal, network, openssl, time }: mkDerivation { pname = "HsOpenSSL"; @@ -10877,7 +10844,6 @@ self: { testHaskellDepends = [ base bytestring ]; description = "Partial OpenSSL binding for Haskell"; license = stdenv.lib.licenses.publicDomain; - hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) openssl;}; "HsOpenSSL-x509-system" = callPackage @@ -13293,6 +13259,8 @@ self: { testHaskellDepends = [ base smallcheck tasty tasty-smallcheck ]; description = "Class of key-value maps"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "MapWith" = callPackage @@ -16368,6 +16336,8 @@ self: { ]; description = "Quasiquotations for a python like interpolated string formater"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "QIO" = callPackage @@ -21914,15 +21884,15 @@ self: { ({ mkDerivation, base, case-insensitive, deepseq, ghc-prim , hashable, hspec, hspec-discover, HUnit, integer-gmp, primitive , QuickCheck, quickcheck-instances, scientific, tagged - , template-haskell, time, unordered-containers, word8 + , template-haskell, unordered-containers, word8 }: mkDerivation { pname = "Z-Data"; - version = "0.1.6.0"; - sha256 = "1mj36swz2fqqch2m08pzy222ml49qvb2nr75sj6v8cmxwis07a5q"; + version = "0.1.8.0"; + sha256 = "1yzavy7y8rdpazxmxfa0b9nw7ijrvafcwi5yv74kkj5m626hcizl"; libraryHaskellDepends = [ base case-insensitive deepseq ghc-prim hashable integer-gmp - primitive QuickCheck scientific tagged template-haskell time + primitive QuickCheck scientific tagged template-haskell unordered-containers ]; libraryToolDepends = [ hspec-discover ]; @@ -21932,19 +21902,22 @@ self: { ]; description = "Array, vector and text"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "Z-IO" = callPackage ({ mkDerivation, base, bytestring, exceptions, hashable, hspec , hspec-discover, HUnit, primitive, QuickCheck - , quickcheck-instances, scientific, stm, time, word8, Z-Data, zlib + , quickcheck-instances, scientific, stm, time, unix-time, word8 + , Z-Data, zlib }: mkDerivation { pname = "Z-IO"; - version = "0.1.3.0"; - sha256 = "0qcnpk2ps2m2s23fv3ydldicz93ad82xadh53wpnwi1m1dh6kjpm"; + version = "0.1.6.1"; + sha256 = "1cd84n434i2l13xziys0rm7wx5iqw2xqydf96yj6fwkaysh3hrps"; libraryHaskellDepends = [ - base exceptions primitive stm time Z-Data + base exceptions primitive stm time unix-time Z-Data ]; libraryToolDepends = [ hspec-discover ]; testHaskellDepends = [ @@ -21953,6 +21926,8 @@ self: { ]; description = "Simple and high performance IO toolkit for Haskell"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "ZEBEDDE" = callPackage @@ -22320,6 +22295,8 @@ self: { benchmarkHaskellDepends = [ criterion rerebase ]; description = "Sequence optimized for monoidal construction and folding"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "accelerate" = callPackage @@ -23863,10 +23840,8 @@ self: { }: mkDerivation { pname = "ad"; - version = "4.4"; - sha256 = "1v7m5nk9aa0sfqfqmv15dq87s2nl7i3v1d5xx0xla9ydhlqizy4x"; - revision = "1"; - editedCabalFile = "1l9515avbn8hc1yc3x9mqxjrl6idjcf4a9wl4m3607n4anc62hlc"; + version = "4.4.1"; + sha256 = "1afpqk0my4n50xvq9f0rhcs8kzy3w1xxjql462xc0mvvhsgp6s6g"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ array base comonad containers data-reify erf free nats reflection @@ -24430,25 +24405,44 @@ self: { }) {}; "aeson-combinators" = callPackage - ({ mkDerivation, aeson, base, bytestring, containers, fail, hspec - , scientific, text, time, time-compat, unordered-containers + ({ mkDerivation, aeson, base, bytestring, containers, doctest, fail + , hspec, scientific, text, time, time-compat, unordered-containers , utf8-string, uuid-types, vector, void }: mkDerivation { pname = "aeson-combinators"; - version = "0.0.2.1"; - sha256 = "1a087940jpbnc2rc7cs4xj6kq1wv7b5ibhaimj7f6jglrn9xjgf0"; + version = "0.0.3.0"; + sha256 = "0x8bk7jxrg8j1zk5047sf5i6fy6hahjzrfnyzgwv1l443z4v445n"; libraryHaskellDepends = [ aeson base bytestring containers fail scientific text time time-compat unordered-containers uuid-types vector void ]; testHaskellDepends = [ - aeson base bytestring hspec text utf8-string + aeson base bytestring doctest hspec text utf8-string ]; description = "Aeson combinators for dead simple JSON decoding"; license = stdenv.lib.licenses.bsd3; }) {}; + "aeson-commit" = callPackage + ({ mkDerivation, aeson, aeson-qq, base, containers, hspec, mtl + , some, tasty, tasty-hspec, text, transformers + }: + mkDerivation { + pname = "aeson-commit"; + version = "1.2"; + sha256 = "09h0gjq9kg1krfsxsy1x697ndi6rajsyqk6j4kkcrq48ynq9vfxr"; + libraryHaskellDepends = [ aeson base mtl text ]; + testHaskellDepends = [ + aeson aeson-qq base containers hspec mtl some tasty tasty-hspec + text transformers + ]; + description = "Parse Aeson data with commitment"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "aeson-compat" = callPackage ({ mkDerivation, aeson, attoparsec, attoparsec-iso8601, base , base-compat, base-orphans, bytestring, containers, exceptions @@ -24515,8 +24509,8 @@ self: { }: mkDerivation { pname = "aeson-deriving"; - version = "0.1.1.1"; - sha256 = "1yqiw8imp30gv3jij4f724yi8mmf6w8fn84kmq9r7yjn7scfz4dj"; + version = "0.1.1.2"; + sha256 = "05mcsask5mhp6gqhch3nnxpcli1j6wax7x9ap1jaypyvq9bi0cxs"; libraryHaskellDepends = [ aeson base regex-tdfa text unordered-containers ]; @@ -24681,8 +24675,8 @@ self: { }: mkDerivation { pname = "aeson-gadt-th"; - version = "0.2.2"; - sha256 = "1nk0897569cldp7fhzc51mj8f93dx3nwk0fxy2pr41wmrbqrxw1k"; + version = "0.2.4"; + sha256 = "0nl9p7q7bfggm7nk8jmqb53qzdr5qwgscpnxy4r7hjvmd4cx6nrm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -26102,16 +26096,17 @@ self: { }) {}; "alfred-margaret" = callPackage - ({ mkDerivation, base, containers, deepseq, hashable, hspec + ({ mkDerivation, aeson, base, containers, deepseq, hashable, hspec , hspec-expectations, primitive, QuickCheck, quickcheck-instances - , text, vector + , text, unordered-containers, vector }: mkDerivation { pname = "alfred-margaret"; - version = "1.0.0.0"; - sha256 = "0dapvcxwwd6ylyqxfjf58jink2rh9i6k1lw1ii6j8jb28qfvy400"; + version = "1.1.1.0"; + sha256 = "1z3plc2a6qnlx1cpb3icw44h3lbspaq2n7djl4pljhb4dm5bflbq"; libraryHaskellDepends = [ - base containers deepseq hashable primitive text vector + aeson base containers deepseq hashable primitive text + unordered-containers vector ]; testHaskellDepends = [ base deepseq hspec hspec-expectations QuickCheck @@ -30273,8 +30268,8 @@ self: { }: mkDerivation { pname = "antiope-athena"; - version = "7.5.1"; - sha256 = "03yy4l5czchq9djxh0yg40vlnynly2wsl5rcj91231n575ndqbij"; + version = "7.5.3"; + sha256 = "0v8qk3v4i8f0bc8mw67km6bly37widk5v94d6paizpkn014c3y0m"; libraryHaskellDepends = [ amazonka amazonka-athena amazonka-core base lens resourcet text unliftio-core @@ -30292,8 +30287,8 @@ self: { ({ mkDerivation, aeson, antiope-s3, avro, base, bytestring, text }: mkDerivation { pname = "antiope-contract"; - version = "7.5.1"; - sha256 = "006i6z7hzz6kkss18wyk2pwmib9ip2z2qwc1r0y3ni1j6kaghbh0"; + version = "7.5.3"; + sha256 = "18ifdaq6z5x3x3fbfbaf86x9wcb4dlgdbdi652a7dyh5kap29a3j"; libraryHaskellDepends = [ aeson antiope-s3 avro base bytestring text ]; @@ -30327,6 +30322,33 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "antiope-core_7_5_3" = callPackage + ({ mkDerivation, aeson, aeson-lens, amazonka, amazonka-core, base + , bytestring, exceptions, generic-lens, hedgehog, hspec + , hspec-discover, http-client, http-types, hw-hspec-hedgehog, lens + , mtl, resourcet, scientific, text, transformers, unliftio-core + }: + mkDerivation { + pname = "antiope-core"; + version = "7.5.3"; + sha256 = "1bzyahw9i098riqlmhymbk0zjg4iz95r0c4mpsrc811wyqdi7f65"; + libraryHaskellDepends = [ + aeson amazonka amazonka-core base bytestring exceptions + generic-lens http-client http-types lens mtl resourcet text + transformers unliftio-core + ]; + testHaskellDepends = [ + aeson aeson-lens amazonka amazonka-core base bytestring exceptions + generic-lens hedgehog hspec http-client http-types + hw-hspec-hedgehog lens mtl resourcet scientific text transformers + unliftio-core + ]; + testToolDepends = [ hspec-discover ]; + description = "Please see the README on Github at "; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "antiope-dynamodb" = callPackage ({ mkDerivation, aeson, amazonka, amazonka-core, amazonka-dynamodb , antiope-core, base, generic-lens, hspec-discover, lens, text @@ -30351,6 +30373,30 @@ self: { broken = true; }) {}; + "antiope-dynamodb_7_5_3" = callPackage + ({ mkDerivation, aeson, amazonka, amazonka-core, amazonka-dynamodb + , antiope-core, base, generic-lens, hspec-discover, lens, text + , unliftio-core, unordered-containers + }: + mkDerivation { + pname = "antiope-dynamodb"; + version = "7.5.3"; + sha256 = "1j9g36c33virrnsqxrggnx2283nw9bp0i256vgq4z92h1z76kfz0"; + libraryHaskellDepends = [ + aeson amazonka amazonka-core amazonka-dynamodb antiope-core base + generic-lens lens text unliftio-core unordered-containers + ]; + testHaskellDepends = [ + amazonka amazonka-core amazonka-dynamodb antiope-core base + generic-lens lens text unliftio-core unordered-containers + ]; + testToolDepends = [ hspec-discover ]; + description = "Please see the README on Github at "; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "antiope-es" = callPackage ({ mkDerivation, aeson, amazonka, amazonka-core , amazonka-elasticsearch, base, bytestring, hspec, hspec-discover @@ -30358,8 +30404,8 @@ self: { }: mkDerivation { pname = "antiope-es"; - version = "7.5.1"; - sha256 = "1ww4bfwqbyrmzb84wy78yqzp3snbq3xlxvhs7vl3ik71bn99abyr"; + version = "7.5.3"; + sha256 = "0w6l22psj5q2p3chvxikywf5ix20sw7qlqgk24rm0ss6ybsfmk2k"; libraryHaskellDepends = [ aeson amazonka amazonka-core amazonka-elasticsearch base bytestring json-stream lens thyme unordered-containers vector @@ -30394,6 +30440,31 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "antiope-messages_7_5_3" = callPackage + ({ mkDerivation, aeson, amazonka, amazonka-core, base, bytestring + , generic-lens, hedgehog, hspec, hspec-discover, hw-hspec-hedgehog + , lens, lens-aeson, monad-loops, network-uri, scientific, text + , unliftio-core + }: + mkDerivation { + pname = "antiope-messages"; + version = "7.5.3"; + sha256 = "1kajbd0f81jamk7cg97zkm9z89m0zlsfklhbfarg3rgiaq28ss2v"; + libraryHaskellDepends = [ + aeson amazonka amazonka-core base bytestring generic-lens lens + lens-aeson monad-loops network-uri text unliftio-core + ]; + testHaskellDepends = [ + aeson amazonka amazonka-core base bytestring generic-lens hedgehog + hspec hw-hspec-hedgehog lens lens-aeson monad-loops network-uri + scientific text unliftio-core + ]; + testToolDepends = [ hspec-discover ]; + description = "Please see the README on Github at "; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "antiope-optparse-applicative" = callPackage ({ mkDerivation, aeson, amazonka, amazonka-core, amazonka-s3, base , hedgehog, hspec, hspec-discover, hw-hspec-hedgehog @@ -30401,8 +30472,8 @@ self: { }: mkDerivation { pname = "antiope-optparse-applicative"; - version = "7.5.1"; - sha256 = "0zmsb9ng46p0plch2q8lh5awbkx7vhg9xl3na1czdk0mdh2hdhxz"; + version = "7.5.3"; + sha256 = "1cmgzkfqszqrngfrpj064cpmkw97pxrmcni3352qyzzicnakww56"; libraryHaskellDepends = [ amazonka amazonka-core amazonka-s3 base optparse-applicative text ]; @@ -30443,6 +30514,35 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "antiope-s3_7_5_3" = callPackage + ({ mkDerivation, aeson, amazonka, amazonka-core, amazonka-s3 + , antiope-core, antiope-messages, attoparsec, base, bytestring + , conduit, conduit-extra, deepseq, dlist, exceptions, generic-lens + , hedgehog, hspec, hspec-discover, http-types, hw-hspec-hedgehog + , lens, mtl, network-uri, resourcet, text, time, unliftio-core + }: + mkDerivation { + pname = "antiope-s3"; + version = "7.5.3"; + sha256 = "1wwh17vzrbg20jmbgf9xdx8vn5qkx8azzczzlyb2s2k3ldlh8s0c"; + libraryHaskellDepends = [ + aeson amazonka amazonka-core amazonka-s3 antiope-core + antiope-messages attoparsec base bytestring conduit conduit-extra + deepseq dlist exceptions generic-lens http-types lens mtl + network-uri resourcet text time unliftio-core + ]; + testHaskellDepends = [ + aeson amazonka amazonka-core amazonka-s3 antiope-core attoparsec + base bytestring conduit conduit-extra exceptions generic-lens + hedgehog hspec http-types hw-hspec-hedgehog lens mtl network-uri + resourcet text time unliftio-core + ]; + testToolDepends = [ hspec-discover ]; + description = "Please see the README on Github at "; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "antiope-shell" = callPackage ({ mkDerivation, aeson, amazonka, amazonka-core, amazonka-s3 , antiope-core, antiope-messages, antiope-s3, attoparsec, base @@ -30453,8 +30553,8 @@ self: { }: mkDerivation { pname = "antiope-shell"; - version = "7.5.1"; - sha256 = "1c68d84ykdamzgybryr474xh826j9b5mh4gn6q3aiapzl5bhh7ym"; + version = "7.5.3"; + sha256 = "1cbvym7ip9vflwjas9fi8izbb6qdrjqq3c8pd7f0ab8a5i7qmbqh"; libraryHaskellDepends = [ aeson amazonka amazonka-core amazonka-s3 antiope-core antiope-messages antiope-s3 attoparsec base bytestring exceptions @@ -30495,6 +30595,30 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "antiope-sns_7_5_3" = callPackage + ({ mkDerivation, aeson, amazonka, amazonka-core, amazonka-sns, base + , bytestring, generic-lens, hedgehog, hspec, hspec-discover + , hw-hspec-hedgehog, lens, text, time, unliftio-core + }: + mkDerivation { + pname = "antiope-sns"; + version = "7.5.3"; + sha256 = "01saqspi2033y423nyw4k0km3ggmypp3zzhkr7ha51r717bj6sii"; + libraryHaskellDepends = [ + aeson amazonka amazonka-core amazonka-sns base bytestring + generic-lens lens text time unliftio-core + ]; + testHaskellDepends = [ + aeson amazonka amazonka-core amazonka-sns base bytestring + generic-lens hedgehog hspec hw-hspec-hedgehog lens text time + unliftio-core + ]; + testToolDepends = [ hspec-discover ]; + description = "Please see the README on Github at "; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "antiope-sqs" = callPackage ({ mkDerivation, aeson, amazonka, amazonka-core, amazonka-sqs, base , bytestring, conduit, generic-lens, hedgehog, hspec @@ -30521,6 +30645,33 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "antiope-sqs_7_5_3" = callPackage + ({ mkDerivation, aeson, amazonka, amazonka-core, amazonka-sqs, base + , bytestring, conduit, generic-lens, hedgehog, hspec + , hspec-discover, hw-hspec-hedgehog, lens, lens-aeson, monad-loops + , mtl, network-uri, split, text, time, unliftio-core + , unordered-containers + }: + mkDerivation { + pname = "antiope-sqs"; + version = "7.5.3"; + sha256 = "18wz0ajnh5hib7srwksbwsyqrnp4slzcd2i30p98gnh1plqgbx5p"; + libraryHaskellDepends = [ + aeson amazonka amazonka-core amazonka-sqs base bytestring conduit + generic-lens lens lens-aeson monad-loops mtl network-uri split text + unliftio-core unordered-containers + ]; + testHaskellDepends = [ + aeson amazonka amazonka-core amazonka-sqs base bytestring conduit + generic-lens hedgehog hspec hw-hspec-hedgehog lens lens-aeson + monad-loops mtl network-uri text time unliftio-core + ]; + testToolDepends = [ hspec-discover ]; + description = "Please see the README on Github at "; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "antiope-swf" = callPackage ({ mkDerivation, amazonka-swf, base, hedgehog, hspec , hspec-discover, hw-hspec-hedgehog, lens, text @@ -30802,6 +30953,8 @@ self: { ]; description = "Simple gloss renderer for apecs"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "apecs-physics" = callPackage @@ -30818,6 +30971,8 @@ self: { ]; description = "2D physics for apecs"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "apecs-physics-gloss" = callPackage @@ -30829,6 +30984,8 @@ self: { libraryHaskellDepends = [ apecs apecs-physics base gloss ]; description = "Gloss rendering for apecs-physics"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "apecs-stm" = callPackage @@ -32079,6 +32236,8 @@ self: { pname = "arbor-postgres"; version = "0.0.5"; sha256 = "0vn3jv60pphjjmhjwn1il3sh886dgdxs47gdiqfrii12hv8rsi21"; + revision = "1"; + editedCabalFile = "0954zfh8rnajywcjipd614axbpqq1r04v2nrrmgyjb3f6bk1y8k9"; libraryHaskellDepends = [ base bytestring generic-lens lens network-uri optparse-applicative postgresql-simple text @@ -32160,8 +32319,8 @@ self: { }: mkDerivation { pname = "arch-hs"; - version = "0.2.0.0"; - sha256 = "08pjfjmj21i1scf4hnhm872wjhkqw9jkk4pgri9yn77kgf76kyf8"; + version = "0.3.0.0"; + sha256 = "068si2cq7557rp86ni5psaig7z89vq38p56743l8yk92i1x1xz9j"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -32180,6 +32339,8 @@ self: { ]; description = "Distribute hackage packages to archlinux"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "archive" = callPackage @@ -33045,12 +33206,12 @@ self: { }) {}; "arrow-list" = callPackage - ({ mkDerivation, base, containers, mtl }: + ({ mkDerivation, base, containers, fail, mtl }: mkDerivation { pname = "arrow-list"; - version = "0.7"; - sha256 = "1n6m77hdkpjd12r0b8fwxiz3jz0j86cplgsk27m2raj86vr3dy1k"; - libraryHaskellDepends = [ base containers mtl ]; + version = "0.7.1"; + sha256 = "11rzpq8mml00amb0hd09bwwhpn199jr8mxp0454ljkpbgqc5jm9s"; + libraryHaskellDepends = [ base containers fail mtl ]; description = "List arrows for Haskell"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; @@ -34900,8 +35061,8 @@ self: { }: mkDerivation { pname = "attoparsec-data"; - version = "1.0.5"; - sha256 = "0wis420lq3bynwjb86sphlhw50d1q9mpm2fnrvpd9a768m1qwiba"; + version = "1.0.5.1"; + sha256 = "1fn28rg79w5kkv3lrmqjcff8fhn1kc2b84vnblr0xqbfdjdbzgp6"; libraryHaskellDepends = [ attoparsec attoparsec-time base bytestring scientific text time uuid @@ -36351,8 +36512,8 @@ self: { }: mkDerivation { pname = "aws-lambda-haskell-runtime"; - version = "3.0.4"; - sha256 = "1rbgi7f1vymh8q6b074z64jlww5gssbzhpam8k8lcgp0zlvm13n1"; + version = "3.0.5"; + sha256 = "07p0lz2hj17n97f2ps59axb4c6416g45m6wcd3hk7jybd6ja8qpr"; libraryHaskellDepends = [ aeson base bytestring case-insensitive http-client http-types path path-io safe-exceptions-checked template-haskell text @@ -36946,13 +37107,13 @@ self: { , free, hashable, hspec, hspec-expectations, lens, monad-control , mtl, neat-interpolation, optparse-applicative, parallel, parsec , posix-pty, pretty, pretty-show, process, QuickCheck, random - , shake, syb, tagged, template, text, time, transformers, unix - , unordered-containers, vector, yaml + , shake, syb, tagged, template, temporary, text, time, transformers + , unix, unordered-containers, vector, yaml }: mkDerivation { pname = "b9"; - version = "3.1.0"; - sha256 = "1jggx5ph7js5r9jck6y2ghlb2il2winz0wg1y01vkp6dc1jpqjd7"; + version = "3.2.0"; + sha256 = "00zsrvqj46a9f7fa8g64xrlmzbwy8gca2bsgvnkv0chzbgn26pjk"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -36961,8 +37122,8 @@ self: { exceptions extensible-effects filepath free hashable hspec hspec-expectations lens monad-control mtl neat-interpolation optparse-applicative parallel parsec posix-pty pretty pretty-show - process QuickCheck random shake syb tagged template text time - transformers unix unordered-containers vector yaml + process QuickCheck random shake syb tagged template temporary text + time transformers unix unordered-containers vector yaml ]; executableHaskellDepends = [ aeson base binary bytestring containers directory @@ -37487,12 +37648,14 @@ self: { ({ mkDerivation, barbies, base, split, template-haskell }: mkDerivation { pname = "barbies-th"; - version = "0.1.4"; - sha256 = "0pzlak3fdbqjs8q5wr11sra3gkjsp2z22b6yy38pmrlzs1phln91"; + version = "0.1.5"; + sha256 = "0bjbvamihrwh4l5zs8fnk2iq98fd1d2xkfbsvp6spfcp1ynqlj6k"; libraryHaskellDepends = [ barbies base split template-haskell ]; testHaskellDepends = [ barbies base ]; description = "Create strippable HKD via TH"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "barbly" = callPackage @@ -37694,6 +37857,8 @@ self: { doHaddock = false; description = "Helps migrating projects to base-compat(-batteries)"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "base-encoding" = callPackage @@ -38968,8 +39133,8 @@ self: { }: mkDerivation { pname = "beam-core"; - version = "0.8.0.0"; - sha256 = "1l71xvmny0nf6fdhsffvfj764h4d97icgc291kfqz25n511b74r8"; + version = "0.9.0.0"; + sha256 = "0ixaxjmgg162ff7srvwmkv5lp1kfb0b6wmrpaz97rsmlpa5vf6ji"; libraryHaskellDepends = [ aeson base bytestring containers dlist free ghc-prim hashable microlens mtl network-uri scientific tagged text time vector @@ -38992,8 +39157,8 @@ self: { }: mkDerivation { pname = "beam-migrate"; - version = "0.4.0.1"; - sha256 = "12c5yibargwrw9z806bik7rly9njq0qa60gsqlh8pbzaaji5fknf"; + version = "0.5.0.0"; + sha256 = "0xrmb5nmn5ffzgcpsjilagz5ppm283kfjvvbnsvpvnh6p6i0xc99"; libraryHaskellDepends = [ aeson base beam-core bytestring containers deepseq dependent-map dependent-sum free ghc-prim hashable haskell-src-exts microlens mtl @@ -39044,16 +39209,16 @@ self: { "beam-postgres" = callPackage ({ mkDerivation, aeson, attoparsec, base, beam-core, beam-migrate - , bytestring, case-insensitive, conduit, directory, filepath, free - , hashable, haskell-src-exts, hedgehog, lifted-base, monad-control - , mtl, network-uri, postgresql-libpq, postgresql-simple, process - , scientific, tagged, tasty, tasty-hunit, temporary, text, time + , bytestring, case-insensitive, conduit, free, hashable + , haskell-src-exts, hedgehog, lifted-base, monad-control, mtl + , network-uri, postgresql-libpq, postgresql-simple, scientific + , tagged, tasty, tasty-hunit, text, time, tmp-postgres , unordered-containers, uuid, uuid-types, vector }: mkDerivation { pname = "beam-postgres"; - version = "0.4.0.0"; - sha256 = "0dxnp6zsyy30vrlv15iw4qwyzwawg468zqqsjnzk9h3g9k9xzj3v"; + version = "0.5.0.0"; + sha256 = "03dd9qzw3b2rqva2pn4iaq5lswn8gb7lrlsa6nmc0bfn1w9i4a7k"; libraryHaskellDepends = [ aeson attoparsec base beam-core beam-migrate bytestring case-insensitive conduit free hashable haskell-src-exts lifted-base @@ -39061,8 +39226,8 @@ self: { scientific tagged text time unordered-containers uuid-types vector ]; testHaskellDepends = [ - base beam-core beam-migrate bytestring directory filepath hedgehog - postgresql-simple process tasty tasty-hunit temporary text uuid + aeson base beam-core beam-migrate bytestring hedgehog + postgresql-simple tasty tasty-hunit text tmp-postgres uuid vector ]; description = "Connection layer between beam and postgres"; license = stdenv.lib.licenses.mit; @@ -39073,16 +39238,21 @@ self: { "beam-sqlite" = callPackage ({ mkDerivation, aeson, attoparsec, base, beam-core, beam-migrate , bytestring, dlist, free, hashable, mtl, network-uri, scientific - , sqlite-simple, text, time, unix + , sqlite-simple, tasty, tasty-expected-failure, tasty-hunit, text + , time, unix }: mkDerivation { pname = "beam-sqlite"; - version = "0.4.0.0"; - sha256 = "09va580nv05xavcrqw9drh86xgqgzl98bvh707xjn1d6wh3miizw"; + version = "0.5.0.0"; + sha256 = "1ng67jspdwp4prfzp9lzhl1g26q9bfpmxpwv0q392y8wwrq6zxrj"; libraryHaskellDepends = [ aeson attoparsec base beam-core beam-migrate bytestring dlist free hashable mtl network-uri scientific sqlite-simple text time unix ]; + testHaskellDepends = [ + base beam-core beam-migrate sqlite-simple tasty + tasty-expected-failure tasty-hunit text time + ]; description = "Beam driver for SQLite"; license = stdenv.lib.licenses.mit; hydraPlatforms = stdenv.lib.platforms.none; @@ -39411,8 +39581,8 @@ self: { ({ mkDerivation, base, bytestring, mtl, time }: mkDerivation { pname = "benchpress"; - version = "0.2.2.14"; - sha256 = "02d4ndwz0xyvfa5j1a4564sfn6fmpf4757dfxr6k20z5vgcdbqih"; + version = "0.2.2.15"; + sha256 = "0bffchlwcyqgbnviqvm01lyj7zldvd3yj9yqnc8150lgxr29kvf9"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base mtl time ]; @@ -40721,16 +40891,17 @@ self: { }) {}; "binaryen" = callPackage - ({ mkDerivation, base, binaryen }: + ({ mkDerivation, base }: mkDerivation { pname = "binaryen"; - version = "0.0.4.0"; - sha256 = "1kgvzn5m2pq7ncid27n68p9axrdganna08wlp8csg9c22jixg7rg"; + version = "0.0.5.0"; + sha256 = "0n3w222k1jbijqgjy1kngwx4hjny7qzw3w2gx82qxycbmm1sb1qg"; libraryHaskellDepends = [ base ]; - librarySystemDepends = [ binaryen ]; + testHaskellDepends = [ base ]; + doHaddock = false; description = "Haskell bindings to binaryen"; license = stdenv.lib.licenses.bsd3; - }) {inherit (pkgs) binaryen;}; + }) {}; "bind-marshal" = callPackage ({ mkDerivation, base, bytestring, containers, deepseq, ghc-prim @@ -44225,6 +44396,8 @@ self: { testToolDepends = [ tasty-discover ]; description = "Generate Haskell boilerplate"; license = stdenv.lib.licenses.gpl3Plus; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "bolt" = callPackage @@ -45650,8 +45823,8 @@ self: { pname = "broadcast-chan"; version = "0.2.1.1"; sha256 = "01r57v2ghfkv37cwh64zs1lrz1rd7is3pa5k7y8h16ws1ddglirg"; - revision = "1"; - editedCabalFile = "1kmnsnyb4gz70bka30l35lgm5k131d8lc1hm4b23aml2yskx3m54"; + revision = "2"; + editedCabalFile = "0zpbfdgxs3b7wx2qgvrs5y01z8lzvww2b7bmyrg5cj6p5xznllk1"; libraryHaskellDepends = [ base transformers unliftio-core ]; benchmarkHaskellDepends = [ async base criterion deepseq stm ]; description = "Closable, fair, single-wakeup channel type that avoids 0 reader space leaks"; @@ -45666,6 +45839,8 @@ self: { pname = "broadcast-chan-conduit"; version = "0.2.1.1"; sha256 = "0w0f4skprhnm1x4vzchkgjgjljzqizpb678251jgj65jsg1mnyfc"; + revision = "1"; + editedCabalFile = "0pk09frf24jg2id13l1nx47wwvf2z4qjqv17y7ji036iwp9xk6nw"; libraryHaskellDepends = [ base broadcast-chan conduit resourcet transformers unliftio-core ]; @@ -45684,6 +45859,8 @@ self: { pname = "broadcast-chan-pipes"; version = "0.2.1"; sha256 = "0yifpd97cihagflmh0xs0wcl541k89hick4h9hh8zrah72g71fqr"; + revision = "1"; + editedCabalFile = "0zz05sc0ny5czzyw71c1fdzlfawjwhznbr8z683bf83821ra5fcv"; libraryHaskellDepends = [ base broadcast-chan pipes pipes-safe ]; testHaskellDepends = [ base broadcast-chan-tests containers foldl pipes pipes-safe @@ -45702,6 +45879,8 @@ self: { pname = "broadcast-chan-tests"; version = "0.2.1.1"; sha256 = "0qx8j9sfky5qvrxrn4is9sja4qh6jh7jahq3zkyyq3a54jkwc8d3"; + revision = "2"; + editedCabalFile = "0dc7drwischhs0k95hjrlssxlqdg3ickrbbrki7wjslmk8k00bki"; libraryHaskellDepends = [ async base broadcast-chan clock containers optparse-applicative paramtree stm tagged tasty tasty-golden tasty-hunit tasty-travis @@ -45928,6 +46107,8 @@ self: { libraryHaskellDepends = [ base ]; description = "Access to the BSD sysctl(3) interface"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "bson" = callPackage @@ -46233,19 +46414,21 @@ self: { "buffet" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, bytestring, cassava , containers, directory, filepath, language-docker, mustache - , optparse-applicative, parsec, random, split, tasty, tasty-hunit - , text, typed-process, unordered-containers, vector, yaml + , optparse-applicative, parsec, prettyprinter, random, split, tasty + , tasty-hunit, text, typed-process, unordered-containers, vector + , yaml }: mkDerivation { pname = "buffet"; - version = "0.4.0"; - sha256 = "04q4k7bfbh41jg869w71wv4idlxbpf48cz2sg5m3ds66wknnhqwq"; + version = "0.5.0"; + sha256 = "0xi5hr51fwksc9983qzgji6p9lhxqfkhnczs6hamddj9glanf183"; isLibrary = false; isExecutable = true; libraryHaskellDepends = [ aeson aeson-pretty base bytestring cassava containers directory filepath language-docker mustache optparse-applicative parsec - random split text typed-process unordered-containers vector yaml + prettyprinter random split text typed-process unordered-containers + vector yaml ]; executableHaskellDepends = [ base ]; testHaskellDepends = [ @@ -46306,12 +46489,12 @@ self: { , case-insensitive, containers, doctest, Glob, hspec, http-client , http-client-tls, http-conduit, http-types, iproute, network , parsec, template-haskell, text, th-lift-instances, time - , ua-parser, unliftio, wai + , ua-parser, unliftio, wai, yaml }: mkDerivation { pname = "bugsnag-haskell"; - version = "0.0.3.1"; - sha256 = "0ka4sj415pn2r2f037hyxw3fwsjzad9g67llm4yx1d3b15zzdxx9"; + version = "0.0.4.0"; + sha256 = "1vmbyyya221f6nkk6j1wxscwcxmh10f0hwsy9ib460d59vf607ym"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -46320,10 +46503,12 @@ self: { template-haskell text th-lift-instances time ua-parser wai ]; testHaskellDepends = [ - aeson aeson-qq base doctest hspec text time unliftio + aeson aeson-qq base doctest hspec text time unliftio yaml ]; description = "Bugsnag error reporter for Haskell"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "bugsnag-hs" = callPackage @@ -46344,20 +46529,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "bugsnag-hs_0_2_0_1" = callPackage - ({ mkDerivation, aeson, auto-update, base, bytestring, hedgehog - , http-client, stm, text, time, unordered-containers + "bugsnag-hs_0_2_0_3" = callPackage + ({ mkDerivation, aeson, base, bytestring, hedgehog, http-client + , text, time, unordered-containers }: mkDerivation { pname = "bugsnag-hs"; - version = "0.2.0.1"; - sha256 = "12s3swamnm9hc3fkwc2qqzr0xz41i0hkgsjmphfsb544r07cfmjn"; + version = "0.2.0.3"; + sha256 = "0jxanklslf0gjw4gb01yz03p2haxmnrmr5wry451lff17azxwlg5"; enableSeparateDataOutput = true; libraryHaskellDepends = [ - aeson auto-update base bytestring http-client stm text time - unordered-containers + aeson base bytestring http-client text time unordered-containers ]; - testHaskellDepends = [ aeson base bytestring hedgehog stm ]; + testHaskellDepends = [ aeson base bytestring hedgehog ]; description = "A Bugsnag client for Haskell"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; @@ -47165,11 +47349,11 @@ self: { }: mkDerivation { pname = "byteslice"; - version = "0.2.3.0"; - sha256 = "1xbsnlryx9ggvp46kv6m0f4hf9vs0bc2ia13jym9aji5rd7qvyfp"; + version = "0.2.4.0"; + sha256 = "0f2dw5kf9gg41ns5hb0aarrv24yqv9cdzgl9hgdcf8jj5j3qj6di"; libraryHaskellDepends = [ - base primitive primitive-addr primitive-unlifted run-st tuples - vector + base bytestring primitive primitive-addr primitive-unlifted run-st + tuples vector ]; testHaskellDepends = [ base bytestring primitive quickcheck-classes tasty tasty-hunit @@ -47611,29 +47795,6 @@ self: { }) {}; "bytestring-tree-builder" = callPackage - ({ mkDerivation, base, base-prelude, bytestring, criterion, deepseq - , QuickCheck, quickcheck-instances, semigroups, tasty, tasty-hunit - , tasty-quickcheck, text - }: - mkDerivation { - pname = "bytestring-tree-builder"; - version = "0.2.7.4"; - sha256 = "1j0jr2xnbqwnl6zwsi07hx9nbw9643xmamp7y3maqhha78h7x4mh"; - libraryHaskellDepends = [ - base base-prelude bytestring semigroups text - ]; - testHaskellDepends = [ - base-prelude bytestring QuickCheck quickcheck-instances tasty - tasty-hunit tasty-quickcheck - ]; - benchmarkHaskellDepends = [ - base-prelude bytestring criterion deepseq - ]; - description = "A very efficient ByteString builder implementation based on the binary tree"; - license = stdenv.lib.licenses.mit; - }) {}; - - "bytestring-tree-builder_0_2_7_5" = callPackage ({ mkDerivation, base, base-prelude, bytestring, criterion, deepseq , QuickCheck, quickcheck-instances, tasty, tasty-hunit , tasty-quickcheck, text @@ -47652,7 +47813,6 @@ self: { ]; description = "A very efficient ByteString builder implementation based on the binary tree"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "bytestring-trie" = callPackage @@ -48154,6 +48314,8 @@ self: { libraryHaskellDepends = [ base Cabal directory extra filepath ]; description = "Build time library that autodetects exposed modules"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "cabal-bounds" = callPackage @@ -48741,24 +48903,25 @@ self: { }: mkDerivation { pname = "cabal-install-parsers"; - version = "0.3.0.1"; - sha256 = "1skv3psqs26m68n5xqsw4jil2f3dz5yv8hmskl58sg0q22mjbspm"; - revision = "1"; - editedCabalFile = "1q89viamcwb49qi8as9pdscsi2a0pkjpfj275ch4rx0qj0vwkr67"; + version = "0.4"; + sha256 = "12z9gz1afra0fqd79j1r9fsdc7k8r6v1saw14l42kd2dqxdjqwcf"; libraryHaskellDepends = [ aeson base base16-bytestring binary binary-instances bytestring Cabal containers cryptohash-sha256 deepseq directory filepath lukko network-uri parsec pretty tar text time transformers ]; testHaskellDepends = [ - ansi-terminal base bytestring Cabal containers directory filepath - pretty tasty tasty-golden tasty-hunit tree-diff + ansi-terminal base base16-bytestring bytestring Cabal containers + directory filepath pretty tar tasty tasty-golden tasty-hunit + tree-diff ]; benchmarkHaskellDepends = [ base bytestring Cabal containers criterion directory filepath ]; description = "Utilities to work with cabal-install files"; license = "GPL-2.0-or-later AND BSD-3-Clause"; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "cabal-lenses" = callPackage @@ -48873,8 +49036,8 @@ self: { }: mkDerivation { pname = "cabal-plan"; - version = "0.7.1.0"; - sha256 = "01hd6wl80j6njlg3h4rxsf5izyx49bs6v1j5756g2pyxc9h4hrs4"; + version = "0.7.2.0"; + sha256 = "118g2ywzgjny57c2iysnj5f7rlriwic3f0k9c54f6bvkc0a3sfi3"; configureFlags = [ "-fexe" ]; isLibrary = true; isExecutable = true; @@ -48925,27 +49088,6 @@ self: { }) {}; "cabal-rpm" = callPackage - ({ mkDerivation, base, bytestring, Cabal, directory, extra - , filepath, http-client, http-client-tls, http-conduit - , optparse-applicative, process, simple-cabal, simple-cmd - , simple-cmd-args, time, unix - }: - mkDerivation { - pname = "cabal-rpm"; - version = "2.0.6"; - sha256 = "1f27arazgv65ripbcjirs4hl5ywr7a7s0vcr5s7jd7176h8dr35b"; - isLibrary = false; - isExecutable = true; - executableHaskellDepends = [ - base bytestring Cabal directory extra filepath http-client - http-client-tls http-conduit optparse-applicative process - simple-cabal simple-cmd simple-cmd-args time unix - ]; - description = "RPM packaging tool for Haskell Cabal-based packages"; - license = stdenv.lib.licenses.gpl3; - }) {}; - - "cabal-rpm_2_0_7" = callPackage ({ mkDerivation, base, bytestring, Cabal, directory, extra , filepath, http-client, http-client-tls, http-conduit , optparse-applicative, process, simple-cabal, simple-cmd @@ -48964,7 +49106,6 @@ self: { ]; description = "RPM packaging tool for Haskell Cabal-based packages"; license = stdenv.lib.licenses.gpl3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "cabal-scripts" = callPackage @@ -49276,6 +49417,8 @@ self: { pname = "cabal2spec"; version = "2.6.2"; sha256 = "0x1r01fk5mch76zindalvmlkfaca4y1x89zw2dm0d46fncsfgdrv"; + revision = "1"; + editedCabalFile = "196j1fga9cqlc0nbxbgl0c3g0ic8sf618whps95zzp58lac9dqak"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base Cabal filepath time ]; @@ -49543,6 +49686,8 @@ self: { ]; description = "Cache combinators"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "cachix" = callPackage @@ -49921,8 +50066,8 @@ self: { }: mkDerivation { pname = "calamity"; - version = "0.1.20.1"; - sha256 = "0nh9x2w8xrmbrkadawq0ab6pvp4v14pr49x18sq9qhi0m922b0p0"; + version = "0.1.21.0"; + sha256 = "0hh3kfcs2wjmkz8ggzshb1535rz13nl1d9yaa73rm2arn73jfsi1"; libraryHaskellDepends = [ aeson async base bytestring colour concurrent-extra containers data-default-class data-flags deepseq deque df1 di-core di-polysemy @@ -50082,8 +50227,8 @@ self: { }: mkDerivation { pname = "call-alloy"; - version = "0.2.0.5"; - sha256 = "1qgvrvb9la7nsx04ql8qvlsavalyimbsc7j6pdc14pmyqnrh3y60"; + version = "0.2.1.0"; + sha256 = "0k75fcrn2r4yk59i8r7qwirg0b9vwga9gmibmj4lznqg44yy2bhi"; libraryHaskellDepends = [ base bytestring containers directory file-embed filepath hashable lens mtl process split trifecta unix @@ -50503,8 +50648,8 @@ self: { }: mkDerivation { pname = "capnp"; - version = "0.6.0.2"; - sha256 = "15dgnrwwsjkf8kis4yknmk6bcxwsyxhabik5j3s0mx4fniabdymc"; + version = "0.6.0.3"; + sha256 = "0zrga41zk41881kr79grdwzl5caawv3khnvpbkhmhfzq3snmnhgd"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -50905,6 +51050,8 @@ self: { pname = "casa-types"; version = "0.0.1"; sha256 = "0f8c4a43rh6zr5cwingxyjfpisipy4x4xc0lpasfjaj4vhjgwqkp"; + revision = "1"; + editedCabalFile = "101hhpwc7nhg2laywv2jnqa3jsjkvbvc30i6cs4srvdv2n87jlcb"; libraryHaskellDepends = [ aeson attoparsec base base16-bytestring bytestring hashable path-pieces persistent text @@ -53475,8 +53622,8 @@ self: { }: mkDerivation { pname = "chessIO"; - version = "0.3.1.2"; - sha256 = "0x79cgngxbrk43f28pprqq85n54cg2i2chhpycdcnkx16iva5bbf"; + version = "0.4.0.0"; + sha256 = "0166hrzpw9hcbcgckyf966nvjyf6caa1h3sdi923m9y32924p65v"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -53595,6 +53742,8 @@ self: { libraryToolDepends = [ c2hs ]; description = "Haskell bindings for Chipmunk2D physics engine"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "chitauri" = callPackage @@ -54140,6 +54289,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "churros" = callPackage + ({ mkDerivation, async, base, containers, doctest, random, stm + , time, unagi-chan + }: + mkDerivation { + pname = "churros"; + version = "0.1.5.0"; + sha256 = "05fb9vmx18dypfw6303y74cbag9vv187w6z402dv4vff35ya4bvh"; + libraryHaskellDepends = [ + async base containers random stm time unagi-chan + ]; + testHaskellDepends = [ + async base containers doctest random stm time unagi-chan + ]; + description = "Channel/Arrow based streaming computation library"; + license = stdenv.lib.licenses.mit; + }) {}; + "cielo" = callPackage ({ mkDerivation, aeson, base, bytestring, convertible, data-default , hspec, http-client, http-types, lens, mtl, pretty-show @@ -54557,6 +54724,32 @@ self: { broken = true; }) {}; + "citeproc" = callPackage + ({ mkDerivation, aeson, attoparsec, base, bytestring + , case-insensitive, containers, data-default, Diff, directory + , file-embed, filepath, mtl, pandoc-types, pretty, rfc5051, safe + , scientific, text, timeit, transformers, uniplate, vector + , xml-conduit + }: + mkDerivation { + pname = "citeproc"; + version = "0.1.0.3"; + sha256 = "10zkkn00b2rm1lfnwdpmbxp82vmzbh69ivsda40kh0x2d8r1rzxp"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson attoparsec base bytestring case-insensitive containers + data-default file-embed filepath pandoc-types rfc5051 safe + scientific text transformers uniplate vector xml-conduit + ]; + testHaskellDepends = [ + aeson base bytestring containers Diff directory filepath mtl pretty + text timeit transformers + ]; + description = "Generates citations and bibliography from CSL styles"; + license = stdenv.lib.licenses.bsd2; + }) {}; + "citeproc-hs" = callPackage ({ mkDerivation, base, bytestring, containers, directory, filepath , hexpat, hs-bibutils, HTTP, json, mtl, network, network-uri @@ -55286,24 +55479,24 @@ self: { , blaze-html, bytestring, cereal, containers, directory, filepath , happstack-authenticate, happstack-hsp, happstack-jmacro , happstack-server, happstack-server-tls, hsp, hsx-jmacro, hsx2hs - , ixset, jmacro, lens, mtl, network, network-uri, old-locale - , openssl, process, random, reform, reform-happstack, reform-hsp - , safecopy, stm, text, time, time-locale-compat + , http-types, ixset, jmacro, lens, mtl, network, network-uri + , old-locale, openssl, process, random, reform, reform-happstack + , reform-hsp, safecopy, stm, text, time, time-locale-compat , unordered-containers, userid, utf8-string, uuid-orphans , uuid-types, vector, web-plugins, web-routes, web-routes-happstack , web-routes-hsp, web-routes-th, xss-sanitize }: mkDerivation { pname = "clckwrks"; - version = "0.26.1"; - sha256 = "1n37gllcgq05wgvq4f10vwz7lll6q8an1gak69m50n6fwx8zpb5i"; + version = "0.26.2.2"; + sha256 = "1m6a043y72da9nyr8x35v5lrh12is49rwarj5dlrm8clp8n987dp"; enableSeparateDataOutput = true; libraryHaskellDepends = [ acid-state aeson aeson-qq attoparsec base blaze-html bytestring cereal containers directory filepath happstack-authenticate happstack-hsp happstack-jmacro happstack-server - happstack-server-tls hsp hsx-jmacro hsx2hs ixset jmacro lens mtl - network network-uri old-locale process random reform + happstack-server-tls hsp hsx-jmacro hsx2hs http-types ixset jmacro + lens mtl network network-uri old-locale process random reform reform-happstack reform-hsp safecopy stm text time time-locale-compat unordered-containers userid utf8-string uuid-orphans uuid-types vector web-plugins web-routes @@ -55451,8 +55644,8 @@ self: { }: mkDerivation { pname = "clckwrks-plugin-media"; - version = "0.6.16.9"; - sha256 = "025zxvb3qynqsl39rnsvfyr7wrpfymmhc120nspd46sv4pvqmgvb"; + version = "0.6.17"; + sha256 = "1yaga5g4r9rngc4f8hz4mndrjd6xnksw2vs916ccx2b5dn6i871c"; enableSeparateDataOutput = true; libraryHaskellDepends = [ acid-state attoparsec base blaze-html cereal clckwrks containers @@ -55476,8 +55669,8 @@ self: { }: mkDerivation { pname = "clckwrks-plugin-page"; - version = "0.4.3.22"; - sha256 = "00ad6ricd8jrjs7l5l2pg3k87x1cjm0x5zlgppzknns4xzjldips"; + version = "0.4.3.23"; + sha256 = "0mk6vz98l2xxhk8w457mbgbcjslnbv34swjrwfjjqk9jhmcnmxss"; libraryHaskellDepends = [ acid-state aeson attoparsec base clckwrks containers directory filepath happstack-hsp happstack-server hsp hsx2hs ixset mtl @@ -55493,14 +55686,40 @@ self: { broken = true; }) {}; + "clckwrks-plugin-redirect" = callPackage + ({ mkDerivation, acid-state, aeson, attoparsec, base, clckwrks + , containers, filepath, happstack-hsp, happstack-server, hsp + , hsx2hs, ixset, mtl, old-locale, random, reform, reform-happstack + , reform-hsp, safecopy, template-haskell, text, uuid, uuid-orphans + , web-plugins, web-routes, web-routes-happstack, web-routes-th + }: + mkDerivation { + pname = "clckwrks-plugin-redirect"; + version = "0.0.1"; + sha256 = "1946m4fxdj8kr7n1q39j2q9j6srdz97srq0fifnk7mil23lw2vyj"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + acid-state aeson attoparsec base clckwrks containers filepath + happstack-hsp happstack-server hsp hsx2hs ixset mtl old-locale + random reform reform-happstack reform-hsp safecopy template-haskell + text uuid uuid-orphans web-plugins web-routes web-routes-happstack + web-routes-th + ]; + description = "support redirects for CMS/Blogging in clckwrks"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "clckwrks-theme-bootstrap" = callPackage ({ mkDerivation, base, clckwrks, happstack-authenticate, hsp , hsx-jmacro, hsx2hs, jmacro, mtl, text, web-plugins }: mkDerivation { pname = "clckwrks-theme-bootstrap"; - version = "0.4.2.3"; - sha256 = "1a00rrb49m358ds408wzm40f6g98w1lnd70rhp4jpkirj94bmaz4"; + version = "0.4.2.4"; + sha256 = "0ay3rb6vfzvb43mwhjzgdf3cp7dcya0l9sl7msns0niak4xmnz1l"; enableSeparateDataOutput = true; libraryHaskellDepends = [ base clckwrks happstack-authenticate hsp hsx-jmacro hsx2hs jmacro @@ -56467,17 +56686,17 @@ self: { }) {inherit (pkgs) clutter; inherit (pkgs) pango;}; "cmaes" = callPackage - ({ mkDerivation, base, doctest, doctest-prop, mtl, process, random + ({ mkDerivation, base, doctest, mtl, process, QuickCheck, random , safe, strict, syb, vector }: mkDerivation { pname = "cmaes"; - version = "0.2.2.1"; - sha256 = "0r0z5rik19sd985hgdy7f00sfpqwlgzbsmkqsiywddi8nqg6qq7m"; + version = "0.2.3"; + sha256 = "1bgyrlqbbq8ff76d6lkig3ajzk2549a7wgvxsdxl76cp3ra323yf"; enableSeparateDataOutput = true; libraryHaskellDepends = [ base mtl process safe strict syb ]; testHaskellDepends = [ - base doctest doctest-prop mtl process random syb vector + base doctest mtl process QuickCheck random syb vector ]; description = "CMA-ES wrapper in Haskell"; license = "unknown"; @@ -56973,6 +57192,31 @@ self: { license = stdenv.lib.licenses.mpl20; }) {}; + "co-log-polysemy-formatting" = callPackage + ({ mkDerivation, ansi-terminal, base, co-log, co-log-core + , co-log-polysemy, formatting, polysemy, polysemy-plugin, text + , time + }: + mkDerivation { + pname = "co-log-polysemy-formatting"; + version = "0.1.0.0"; + sha256 = "17dajk3d23xa1fj8qs896szs00vvwpdgcgjibvkw9mm160yvrlxi"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + ansi-terminal base co-log co-log-core co-log-polysemy formatting + polysemy text time + ]; + executableHaskellDepends = [ + ansi-terminal base co-log co-log-core co-log-polysemy formatting + polysemy polysemy-plugin text time + ]; + description = "A Polysemy logging effect for high quality (unstructured) logs"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "co-log-sys" = callPackage ({ mkDerivation, aeson, base, co-log-core, fmt, microlens , monad-control, mtl, network, universum, unix @@ -57048,8 +57292,8 @@ self: { }: mkDerivation { pname = "cobot-io"; - version = "0.1.3.6"; - sha256 = "0ry01h9vkr5zyiwp60vqb8mp2lfg3yhfbaz0c7jammk034dszkf1"; + version = "0.1.3.8"; + sha256 = "1x3ikycb9v9hmn1j57sddnr50kb3kvnch6w09fsyqzzmbnfc6nys"; libraryHaskellDepends = [ array attoparsec base binary bytestring containers data-msgpack deepseq http-conduit hyraxAbif lens linear mtl split text vector @@ -57377,6 +57621,8 @@ self: { pname = "coercible-subtypes"; version = "0.1.0.0"; sha256 = "1z5fmdgv52x410x2z4gxyac18f98226dymzdvhcvkx7mw2k9q44x"; + revision = "1"; + editedCabalFile = "05bd9lp5jp31ac039vq0p58kr03g5ai3cyymc4ikhbnl3x44hx4d"; libraryHaskellDepends = [ base profunctors ]; description = "Coercible but only in one direction"; license = stdenv.lib.licenses.bsd3; @@ -58448,21 +58694,16 @@ self: { }) {}; "commander-cli" = callPackage - ({ mkDerivation, base, bytestring, commandert, containers - , directory, mtl, process, text, unordered-containers + ({ mkDerivation, base, bytestring, commandert, containers, mtl + , text, unordered-containers }: mkDerivation { pname = "commander-cli"; - version = "0.10.1.1"; - sha256 = "04w8wlbxykp7jl5h76p9pgsg0h3qv94azalhma3f13r3zb5086x6"; - isLibrary = true; - isExecutable = true; + version = "0.10.1.2"; + sha256 = "0hkz657j9rpmda1rr4v7696216xxwjwpzgc5npg5ajhdk74w1vz0"; libraryHaskellDepends = [ base bytestring commandert containers mtl text unordered-containers ]; - executableHaskellDepends = [ - base commandert directory mtl process text - ]; testHaskellDepends = [ base commandert text unordered-containers ]; description = "A command line argument/option parser library"; license = stdenv.lib.licenses.mit; @@ -60436,8 +60677,8 @@ self: { }: mkDerivation { pname = "conduit"; - version = "1.3.2.1"; - sha256 = "0kyl1zspkp14vrgxgc2zpy9rd9h6aa7m9f385sgshysnhbc7hbg5"; + version = "1.3.3"; + sha256 = "0jv3j1dc7iswi3kljn9y3jq7rn2aiq9d1vkn2xdpirc519ckxfnl"; libraryHaskellDepends = [ base bytestring directory exceptions filepath mono-traversable mtl primitive resourcet text transformers unix unliftio-core vector @@ -61355,6 +61596,8 @@ self: { libraryHaskellDepends = [ base config-value text ]; description = "Interface between config-value and System.GetOpt"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "configifier" = callPackage @@ -63396,8 +63639,8 @@ self: { }: mkDerivation { pname = "core-program"; - version = "0.2.4.5"; - sha256 = "1a2zjdywmgniwcj649f43hri55bh30vz2s00r3yqj3gvhhighi86"; + version = "0.2.5.0"; + sha256 = "0bgzlyxcmnn7bscw04v9rljny9wjhcg066nbqk47aphdd6b716dj"; libraryHaskellDepends = [ async base bytestring chronologique core-data core-text directory exceptions filepath fsnotify hashable hourglass mtl prettyprinter @@ -66725,6 +66968,8 @@ self: { ]; description = "A framework for declaratively writing curl based API tests"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "curlhs" = callPackage @@ -67107,39 +67352,39 @@ self: { "cut-the-crap" = callPackage ({ mkDerivation, base, c2hs, exceptions, generic-lens, hspec - , hspec-core, lens, optparse-applicative, pocketsphinx, QuickCheck - , quickcheck-classes, regex-tdfa, shelly, sphinxbase - , system-filepath, temporary, text, time, unliftio-core + , hspec-core, lens, network-uri, optparse-applicative, pocketsphinx + , QuickCheck, quickcheck-classes, random, regex-tdfa, shelly + , sphinxbase, system-filepath, temporary, text, time, unliftio-core }: mkDerivation { pname = "cut-the-crap"; - version = "1.4.2"; - sha256 = "16l8ar38nl2sgsbwjslhxd8z2wyjmdgmi51sic3vvyv7n6b9mr51"; + version = "2.1.1"; + sha256 = "0w0ir436gmh3d9ycdcjyxkgblrah7ij5njqmm44lx1kyhih6bk2x"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base exceptions generic-lens lens optparse-applicative regex-tdfa - shelly system-filepath temporary text time unliftio-core + base exceptions generic-lens lens network-uri optparse-applicative + random regex-tdfa shelly system-filepath temporary text time + unliftio-core ]; libraryPkgconfigDepends = [ pocketsphinx sphinxbase ]; libraryToolDepends = [ c2hs ]; executableHaskellDepends = [ - base exceptions generic-lens lens optparse-applicative regex-tdfa - shelly system-filepath temporary text time unliftio-core + base exceptions generic-lens lens network-uri optparse-applicative + random regex-tdfa shelly system-filepath temporary text time + unliftio-core ]; executablePkgconfigDepends = [ pocketsphinx sphinxbase ]; executableToolDepends = [ c2hs ]; testHaskellDepends = [ - base exceptions generic-lens hspec hspec-core lens - optparse-applicative QuickCheck quickcheck-classes regex-tdfa - shelly system-filepath temporary text time unliftio-core + base exceptions generic-lens hspec hspec-core lens network-uri + optparse-applicative QuickCheck quickcheck-classes random + regex-tdfa shelly system-filepath temporary text time unliftio-core ]; testPkgconfigDepends = [ pocketsphinx sphinxbase ]; testToolDepends = [ c2hs ]; description = "Cuts out uninteresting parts of videos by detecting silences"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; - broken = true; }) {inherit (pkgs) pocketsphinx; inherit (pkgs) sphinxbase;}; "cutter" = callPackage @@ -67483,17 +67728,17 @@ self: { , filepath, FindBin, hashable, haskeline, html, http-conduit , http-types, HUnit, leancheck, memory, mmap, monad-control, mtl , network, network-uri, old-time, parsec, process, QuickCheck - , regex-applicative, regex-compat-tdfa, sandi, split, stm - , system-fileio, system-filepath, tar, temporary, terminfo - , test-framework, test-framework-hunit, test-framework-leancheck + , regex-applicative, regex-compat-tdfa, stm, system-fileio + , system-filepath, tar, temporary, terminfo, test-framework + , test-framework-hunit, test-framework-leancheck , test-framework-quickcheck2, text, time, transformers , transformers-base, unix, unix-compat, utf8-string, vector , zip-archive, zlib }: mkDerivation { pname = "darcs"; - version = "2.16.2"; - sha256 = "1nsmaai4l5zas4v1vk92nvh721dykcxrpd4c2v9bh3wi3n2m45qn"; + version = "2.16.3"; + sha256 = "1bf11ndz6k7fx9bb31l4l6dqfkrld3gxsrrqggcg7d57wa3yw9c9"; configureFlags = [ "-fforce-char8-encoding" "-flibrary" ]; isLibrary = true; isExecutable = true; @@ -67503,16 +67748,16 @@ self: { conduit constraints containers cryptonite data-ordlist directory fgl filepath hashable haskeline html http-conduit http-types memory mmap mtl network network-uri old-time parsec process - regex-applicative regex-compat-tdfa sandi stm tar temporary - terminfo text time transformers unix unix-compat utf8-string vector - zip-archive zlib + regex-applicative regex-compat-tdfa stm tar temporary terminfo text + time transformers unix unix-compat utf8-string vector zip-archive + zlib ]; executableHaskellDepends = [ base ]; testHaskellDepends = [ array async base bytestring cmdargs constraints containers directory exceptions filepath FindBin HUnit leancheck monad-control - mtl process QuickCheck split system-fileio system-filepath - test-framework test-framework-hunit test-framework-leancheck + mtl process QuickCheck system-fileio system-filepath test-framework + test-framework-hunit test-framework-leancheck test-framework-quickcheck2 text time transformers transformers-base unix-compat vector zip-archive ]; @@ -69271,17 +69516,20 @@ self: { }) {}; "data-reify" = callPackage - ({ mkDerivation, base, containers, hashable, unordered-containers + ({ mkDerivation, base, base-compat, containers, hashable, hspec + , hspec-discover, unordered-containers }: mkDerivation { pname = "data-reify"; - version = "0.6.2"; - sha256 = "19mljyx1v86plnwqm5y1livw5qd8cc9z5k1kfchqiiwj1vsq660v"; + version = "0.6.3"; + sha256 = "1sacbil9xn1n2085wpa0dq7ikf1wvh2kkddnvmwsp22ssx059h55"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base containers hashable unordered-containers ]; + testHaskellDepends = [ base base-compat hspec ]; + testToolDepends = [ hspec-discover ]; description = "Reify a recursive data structure into an explicit graph"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -71462,8 +71710,8 @@ self: { }: mkDerivation { pname = "deferred-folds"; - version = "0.9.10.1"; - sha256 = "15lwcc7i7wmi1gkkmak677qw0fnz4a4ldnv842xaimfi64753shv"; + version = "0.9.11"; + sha256 = "02j1akzjdi73l7adlhv49sln5saq2j53pziqwzw6zw0bsf53q00k"; libraryHaskellDepends = [ base bytestring containers foldl hashable primitive transformers unordered-containers vector @@ -73035,7 +73283,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "dhall_1_35_0" = callPackage + "dhall_1_36_0" = callPackage ({ mkDerivation, aeson, aeson-pretty, ansi-terminal, atomic-write , base, bytestring, case-insensitive, cborg, cborg-json, containers , contravariant, cryptonite, data-fix, deepseq, Diff, directory @@ -73054,10 +73302,8 @@ self: { }: mkDerivation { pname = "dhall"; - version = "1.35.0"; - sha256 = "19h0afgxqq9da1apx4xx9p4p0f2r6miivc4l1dkhbbvfk2r5wkw3"; - revision = "2"; - editedCabalFile = "0jfgmh4mh7v2srwvz76zpffhgnrqx9fgrhn2hdsfgrzh95zjx0my"; + version = "1.36.0"; + sha256 = "014bdxmrcxzc2yrk838fxbz521714fk3a7c6idb9065wrfzch1wj"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -73076,11 +73322,12 @@ self: { executableHaskellDepends = [ base ]; testHaskellDepends = [ base bytestring cborg containers data-fix deepseq directory doctest - either filepath foldl generic-random lens-family-core megaparsec - mockery prettyprinter QuickCheck quickcheck-instances scientific - serialise special-values spoon tasty tasty-expected-failure - tasty-hunit tasty-quickcheck tasty-silver template-haskell text - transformers turtle unordered-containers vector + either filepath foldl generic-random http-client http-client-tls + lens-family-core megaparsec mockery prettyprinter QuickCheck + quickcheck-instances scientific serialise special-values spoon + tasty tasty-expected-failure tasty-hunit tasty-quickcheck + tasty-silver template-haskell text transformers turtle + unordered-containers vector ]; benchmarkHaskellDepends = [ base bytestring containers directory gauge text @@ -73114,16 +73361,14 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "dhall-bash_1_0_33" = callPackage + "dhall-bash_1_0_34" = callPackage ({ mkDerivation, base, bytestring, containers, dhall , neat-interpolation, optparse-generic, shell-escape, text }: mkDerivation { pname = "dhall-bash"; - version = "1.0.33"; - sha256 = "0b920cscim2mqcav0yy4s00gcgjqfybvbmfvnnbvarxswknw8z1v"; - revision = "1"; - editedCabalFile = "1r01himc5n19q9675i6i27yrfrx9l362ycsnvk48mcbrbmv1z5lf"; + version = "1.0.34"; + sha256 = "1p1zylrjk80lh8rxpw2z3wyvk9x7q65lwyfwfacx8rrbgzx54riy"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -73166,8 +73411,8 @@ self: { }: mkDerivation { pname = "dhall-docs"; - version = "1.0.1"; - sha256 = "0632l4h72zrddknhha8lz53ynzbdrhb11mvj09qfmr4b1rd01amz"; + version = "1.0.2"; + sha256 = "17l8vwj02lbkqy8p4j7rhmwidrxx1ln375cv8lgwwx4n0fgvmgfc"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -73253,7 +73498,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "dhall-json_1_7_2" = callPackage + "dhall-json_1_7_3" = callPackage ({ mkDerivation, aeson, aeson-pretty, aeson-yaml, ansi-terminal , base, bytestring, containers, dhall, exceptions, filepath , lens-family-core, optparse-applicative, prettyprinter @@ -73262,8 +73507,8 @@ self: { }: mkDerivation { pname = "dhall-json"; - version = "1.7.2"; - sha256 = "189mpnh2fnm1gwc1lvqa3wy9wk2wh8jj3216dvidik545008yvcj"; + version = "1.7.3"; + sha256 = "0as1n4qy0rynmj1y7h39l1lazqarwgizbzsn0g7apixzzdfm53kx"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -73331,7 +73576,7 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "dhall-lsp-server_1_0_10" = callPackage + "dhall-lsp-server_1_0_11" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, bytestring, containers , data-default, dhall, dhall-json, directory, doctest, filepath , haskell-lsp, haskell-lsp-types, hslogger, lens, lens-family-core @@ -73341,8 +73586,8 @@ self: { }: mkDerivation { pname = "dhall-lsp-server"; - version = "1.0.10"; - sha256 = "0z6b3yq8fijxycabwrbqn2z94lb2ak2fmajlxgawyd1723cl2wsb"; + version = "1.0.11"; + sha256 = "0xp4mbk26p22xs5f2bz493yi9ijbiiz1jwmc462yk1bxxz5lbx5n"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -73367,10 +73612,8 @@ self: { }: mkDerivation { pname = "dhall-nix"; - version = "1.1.17"; - sha256 = "1c696f0if218pbmir4rmkb6shcgk9acw5g1iwcb2mslshmncbyfd"; - revision = "1"; - editedCabalFile = "0vdni3cmx3p6a0p587avja4zg6278fmdfv6jh5h4wfx0b7z1sphg"; + version = "1.1.18"; + sha256 = "0d947iz98mkmz7chxcp2402kid711na7xwwx8xzh8jg5lh41sm7w"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -73382,6 +73625,8 @@ self: { ]; description = "Dhall to Nix compiler"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "dhall-nixpkgs" = callPackage @@ -73392,8 +73637,8 @@ self: { }: mkDerivation { pname = "dhall-nixpkgs"; - version = "1.0.1"; - sha256 = "1dw3bygs3da7yfcm5h376ppswv3dcny42yqjy7fabyzw72d4586z"; + version = "1.0.2"; + sha256 = "1r76zbqk2pc5pryrbdj425j6bb86x28pqfkav3kw9kr4703afhni"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -73403,6 +73648,8 @@ self: { ]; description = "Convert Dhall projects to Nix packages"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "dhall-text" = callPackage @@ -73486,7 +73733,7 @@ self: { broken = true; }) {}; - "dhall-yaml_1_2_2" = callPackage + "dhall-yaml_1_2_3" = callPackage ({ mkDerivation, aeson, ansi-terminal, base, bytestring, dhall , dhall-json, exceptions, HsYAML, HsYAML-aeson , optparse-applicative, prettyprinter, prettyprinter-ansi-terminal @@ -73494,8 +73741,8 @@ self: { }: mkDerivation { pname = "dhall-yaml"; - version = "1.2.2"; - sha256 = "1mswyac77p0zpjdfr86x4ddwlnvqz0ibf98hr8q0zm1a9ibds982"; + version = "1.2.3"; + sha256 = "1n42brr1yifb4pyl26960rsm8b1wzw0hvv6mmq8m5ml5av61ymf3"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -75155,6 +75402,8 @@ self: { ]; description = "Gemini client"; license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "diophantine" = callPackage @@ -75464,6 +75713,27 @@ self: { broken = true; }) {}; + "dirichlet" = callPackage + ({ mkDerivation, base, hspec, hspec-discover, log-domain + , math-functions, mwc-random, primitive, vector + }: + mkDerivation { + pname = "dirichlet"; + version = "0.1.0.0"; + sha256 = "173mw8706fjrqdjwrjfcb8g140hp4xdjbpvhvq71f8lj8527b9ia"; + libraryHaskellDepends = [ + base log-domain math-functions mwc-random primitive vector + ]; + testHaskellDepends = [ + base hspec hspec-discover log-domain mwc-random vector + ]; + testToolDepends = [ hspec-discover ]; + description = "Multivariate dirichlet distribution"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "dirstream" = callPackage ({ mkDerivation, base, directory, pipes, pipes-safe, system-fileio , system-filepath, unix @@ -78771,6 +79041,34 @@ self: { broken = true; }) {}; + "dropbox" = callPackage + ({ mkDerivation, aeson, aeson-qq, base, hspec, hspec-core + , http-api-data, http-client-tls, servant, servant-auth + , servant-auth-client, servant-client, servant-client-core, text + }: + mkDerivation { + pname = "dropbox"; + version = "0.0.4"; + sha256 = "1syfzlgjph7nn2231sn0cm3q0f32inc5r9zc95f8kl43qa003zrz"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base http-api-data http-client-tls servant servant-auth + servant-auth-client servant-client servant-client-core text + ]; + executableHaskellDepends = [ + aeson base http-api-data http-client-tls servant servant-auth + servant-auth-client servant-client servant-client-core text + ]; + testHaskellDepends = [ + aeson aeson-qq base hspec hspec-core http-api-data http-client-tls + servant servant-auth servant-auth-client servant-client + servant-client-core text + ]; + description = "Dropbox API client"; + license = stdenv.lib.licenses.mit; + }) {}; + "dropbox-sdk" = callPackage ({ mkDerivation, base, blaze-builder, bytestring, case-insensitive , certificate, conduit, HTTP, http-conduit, http-types, json @@ -78986,6 +79284,28 @@ self: { broken = true; }) {}; + "dsv" = callPackage + ({ mkDerivation, attoparsec, base, bytestring, cassava, containers + , doctest, foldl, hedgehog, pipes, pipes-bytestring, pipes-safe + , safe-exceptions, template-haskell, text, validation, vector + }: + mkDerivation { + pname = "dsv"; + version = "1.0.0.0"; + sha256 = "0fjfpa8qfaiy7wxmq9lsacxywrsqahl8s8wamxfiai7mzq2201gn"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + attoparsec base bytestring cassava containers foldl pipes + pipes-bytestring pipes-safe template-haskell text validation vector + ]; + testHaskellDepends = [ + base bytestring containers doctest foldl hedgehog safe-exceptions + text vector + ]; + description = "DSV (delimiter-separated values)"; + license = stdenv.lib.licenses.mit; + }) {}; + "dtab" = callPackage ({ mkDerivation, alex, array, base, binary, bytestring, containers , data-binary-ieee754, happy, pretty, transformers @@ -79108,8 +79428,8 @@ self: { pname = "dual-game"; version = "0.1.0.1"; sha256 = "1w69d7d2xbpi82n41gq08qdmldh834ka7qwvy159vsac556wwcfg"; - revision = "6"; - editedCabalFile = "10hj6snshirfx6apbrdb2jm45xsgvsis0c7i5a33wwl0lnklxwj2"; + revision = "7"; + editedCabalFile = "04hi455i82y7nf30chnkbvgfz5fzn050nb3r916abr7s205jfzkq"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -80917,17 +81237,21 @@ self: { }) {}; "effet" = callPackage - ({ mkDerivation, base, containers, monad-control, template-haskell - , transformers, transformers-base + ({ mkDerivation, base, containers, hspec, monad-control + , template-haskell, transformers, transformers-base }: mkDerivation { pname = "effet"; - version = "0.2.0.0"; - sha256 = "1fh6pyjalrns01sg1rnz2h462xgcmnj6xfg6xg61cdb4zh5i9gpp"; + version = "0.3.0.2"; + sha256 = "1yy8hpq74bp4ffz7b5h7j9ja6akizl7d3b9n7n42c0iwlzr1hi4s"; libraryHaskellDepends = [ base containers monad-control template-haskell transformers transformers-base ]; + testHaskellDepends = [ + base containers hspec monad-control template-haskell transformers + transformers-base + ]; description = "An Effect System based on Type Classes"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -80982,6 +81306,42 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "egison_4_1_1" = callPackage + ({ mkDerivation, array, base, containers, criterion, directory + , exceptions, filepath, ghc, ghc-paths, Glob, hashable, haskeline + , HUnit, megaparsec, mtl, optparse-applicative, parsec + , parser-combinators, prettyprinter, process, random, regex-tdfa + , split, sweet-egison, test-framework, test-framework-hunit, text + , transformers, unicode-show, unordered-containers, vector + }: + mkDerivation { + pname = "egison"; + version = "4.1.1"; + sha256 = "16z2zp3gjm3gwp884ab86g0vhkxkkfxma0p9h1as5fyc6kvnsdbn"; + isLibrary = true; + isExecutable = true; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + array base containers directory ghc ghc-paths hashable haskeline + megaparsec mtl optparse-applicative parsec parser-combinators + prettyprinter process random regex-tdfa split sweet-egison text + transformers unicode-show unordered-containers vector + ]; + executableHaskellDepends = [ + array base containers directory exceptions filepath ghc ghc-paths + haskeline mtl optparse-applicative parsec prettyprinter process + regex-tdfa split text transformers unordered-containers vector + ]; + testHaskellDepends = [ + base filepath Glob HUnit mtl test-framework test-framework-hunit + transformers + ]; + benchmarkHaskellDepends = [ base criterion ]; + description = "Programming language with non-linear pattern-matching against non-free data"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "egison-pattern-src" = callPackage ({ mkDerivation, base, containers, free, megaparsec, mtl , parser-combinators, prettyprinter, recursion-schemes, tasty @@ -82255,8 +82615,8 @@ self: { }: mkDerivation { pname = "elynx"; - version = "0.4.0"; - sha256 = "0qhq3h1va7pfcz58mkdw690v88jr3ynk2rrwl0s5qdz8xxvs5n3a"; + version = "0.4.1"; + sha256 = "0pz4s53mn1511hda16qi7l28whq05fcyrf1s8ywq42a3mbayw964"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -82276,8 +82636,8 @@ self: { }: mkDerivation { pname = "elynx-markov"; - version = "0.4.0"; - sha256 = "0ikk9xk71xyn1fmhzx59lfyk9skjkvhg19xb2afhcylnbg41f3wz"; + version = "0.4.1"; + sha256 = "1qzyfxzg6qq7ajm7b3v62qqychhzh4ms2677acvzjgvc51syk1fq"; libraryHaskellDepends = [ async attoparsec base bytestring containers elynx-seq hmatrix integration math-functions mwc-random parallel primitive statistics @@ -82296,8 +82656,8 @@ self: { ({ mkDerivation, attoparsec, base, bytestring, hspec }: mkDerivation { pname = "elynx-nexus"; - version = "0.4.0"; - sha256 = "02g67w8xracbasnkha383vz0ls1haxr78ia27k292lx572l17dvv"; + version = "0.4.1"; + sha256 = "0p2kww6fqmfv3bmd5z0c3n8s0rhfbm480jqh16s794xndbbxd15i"; libraryHaskellDepends = [ attoparsec base bytestring ]; testHaskellDepends = [ base hspec ]; description = "Import and export Nexus files"; @@ -82313,8 +82673,8 @@ self: { }: mkDerivation { pname = "elynx-seq"; - version = "0.4.0"; - sha256 = "03dh4rjdgn580niljgrl0cfw5h2mah8q1252jq3jx8349jxgpcmh"; + version = "0.4.1"; + sha256 = "1mdl7fzzax4dn68paxivms96jfxriladbkwkbq6hff1z5xdwvj2h"; libraryHaskellDepends = [ aeson attoparsec base bytestring containers matrices mwc-random parallel primitive vector vector-th-unbox word8 @@ -82337,8 +82697,8 @@ self: { }: mkDerivation { pname = "elynx-tools"; - version = "0.4.0"; - sha256 = "0n8rf7y4qxhx35fhbhj4yc541ydsx8qvy66d11sl5a836gmsv0rr"; + version = "0.4.1"; + sha256 = "0dxhwmpaf9r8kr67sa2kn1i7w06skcl1hvxkcranw0xvijwm8g5r"; libraryHaskellDepends = [ aeson attoparsec base base16-bytestring bytestring cryptohash-sha256 deepseq directory fast-logger hmatrix @@ -82355,23 +82715,23 @@ self: { "elynx-tree" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, comonad , containers, criterion, deepseq, double-conversion, elynx-nexus - , elynx-tools, hspec, math-functions, mwc-random, primitive - , QuickCheck, statistics + , elynx-tools, hspec, math-functions, mwc-random, parallel + , primitive, QuickCheck, statistics }: mkDerivation { pname = "elynx-tree"; - version = "0.4.0"; - sha256 = "1j22gkg1971wrih4gs4bxzkghvd3ddj85s6s5mcqhrfxmdnpsn2c"; + version = "0.4.1"; + sha256 = "1yd2gk0y55vjaw6b2m6cm25qidmznmvhrb3ypr4rb3bg4yck5ydh"; libraryHaskellDepends = [ aeson attoparsec base bytestring comonad containers deepseq - double-conversion elynx-nexus math-functions mwc-random primitive - statistics + double-conversion elynx-nexus math-functions mwc-random parallel + primitive statistics ]; testHaskellDepends = [ attoparsec base bytestring containers elynx-tools hspec QuickCheck ]; benchmarkHaskellDepends = [ - base bytestring criterion elynx-tools + base bytestring criterion deepseq elynx-tools mwc-random parallel ]; description = "Handle phylogenetic trees"; license = stdenv.lib.licenses.gpl3Plus; @@ -83513,6 +83873,26 @@ self: { broken = true; }) {}; + "epi-sim" = callPackage + ({ mkDerivation, aeson, base, bytestring, cassava, hspec + , mwc-random, primitive, statistics, trifecta, vector + }: + mkDerivation { + pname = "epi-sim"; + version = "0.2.2.0"; + sha256 = "17pri7fynx5zi6hacglv2xww41837nrq0d355pv7rkvmqz5f8y3a"; + libraryHaskellDepends = [ + aeson base bytestring cassava hspec mwc-random primitive statistics + trifecta vector + ]; + testHaskellDepends = [ + aeson base bytestring cassava hspec mwc-random primitive statistics + trifecta vector + ]; + description = "A library for simulating epidemics as birth-death processes"; + license = stdenv.lib.licenses.mit; + }) {}; + "epic" = callPackage ({ mkDerivation, array, base, Cabal, directory, mtl, process }: mkDerivation { @@ -85071,8 +85451,8 @@ self: { }: mkDerivation { pname = "eve"; - version = "0.1.8"; - sha256 = "1bhv9mh61f69xff5y8nagri1flc3m87sxx3b17kbxi5d2hhzsaqz"; + version = "0.1.9.0"; + sha256 = "06b2qybglsww0f7wpy2fnmr3l9r5a0aikybd23cjl6ribq86l8y9"; libraryHaskellDepends = [ base containers data-default free lens mtl ]; @@ -86078,6 +86458,8 @@ self: { ]; description = "Haskell bindings to ExifTool"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "exigo-schema" = callPackage @@ -87592,6 +87974,22 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "fakedata-quickcheck" = callPackage + ({ mkDerivation, base, fakedata, hspec, hspec-core, QuickCheck + , random, regex-tdfa, text + }: + mkDerivation { + pname = "fakedata-quickcheck"; + version = "0.1.0"; + sha256 = "0al5brin9bs0553rrw073za4jzw2whrf05yj6h34lmx4kxzciv6s"; + libraryHaskellDepends = [ base fakedata QuickCheck random ]; + testHaskellDepends = [ + base fakedata hspec hspec-core QuickCheck random regex-tdfa text + ]; + description = "Fake a -> Gen a"; + license = stdenv.lib.licenses.mit; + }) {}; + "fakefs" = callPackage ({ mkDerivation, base, containers, exceptions, hspec, mtl , QuickCheck @@ -88103,6 +88501,8 @@ self: { pname = "fastsum"; version = "0.1.1.1"; sha256 = "0j9jd068xgk7nn2ilgdkv1pxngflqqgxz1pnhdssgiih04v8zw5l"; + revision = "1"; + editedCabalFile = "0mmdkpgxlc6fsl5pq8kgdh41h08m86s0y4wnan293h3c74q1xd6x"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -91281,6 +91681,40 @@ self: { broken = true; }) {}; + "flashblast" = callPackage + ({ mkDerivation, aeson, attoparsec, base, co-log-polysemy + , co-log-polysemy-formatting, composite-base, dhall, formatting + , http-conduit, lucid, megaparsec, path, path-dhall-instance + , path-utils, polysemy, polysemy-plugin, polysemy-video + , polysemy-zoo, replace-megaparsec, rio, semialign, subtitleParser + , temporary, these, turtle, unliftio-path, vinyl + }: + mkDerivation { + pname = "flashblast"; + version = "0.0.4.0"; + sha256 = "13n90wkmj69lkyvsw34dhr173m8qfdclkygnh7v5xwdrk5fgpb5s"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson attoparsec base co-log-polysemy co-log-polysemy-formatting + composite-base dhall formatting http-conduit lucid megaparsec path + path-dhall-instance path-utils polysemy polysemy-plugin + polysemy-video polysemy-zoo replace-megaparsec rio semialign + subtitleParser temporary these turtle unliftio-path vinyl + ]; + executableHaskellDepends = [ + aeson attoparsec base co-log-polysemy co-log-polysemy-formatting + composite-base dhall formatting http-conduit lucid megaparsec path + path-dhall-instance path-utils polysemy polysemy-plugin + polysemy-video polysemy-zoo replace-megaparsec rio semialign + subtitleParser temporary these turtle unliftio-path vinyl + ]; + description = "Generate language learning flashcards from video"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "flat" = callPackage ({ mkDerivation, array, base, bytestring, containers, deepseq , dlist, filepath, ghc-prim, hashable, mono-traversable, pretty @@ -91329,8 +91763,8 @@ self: { }: mkDerivation { pname = "flat-mcmc"; - version = "1.5.1"; - sha256 = "1fi18hx6mz7qskhnnjviaghqz0vsbrvglyk16xzj3kywx70hakpb"; + version = "1.5.2"; + sha256 = "13xdmiw96hb0iw87bzyks5bm58rgcv348aj09ax7gy2qjpq969iv"; libraryHaskellDepends = [ base formatting mcmc-types monad-par monad-par-extras mwc-probability pipes primitive text transformers vector @@ -91561,6 +91995,8 @@ self: { libraryToolDepends = [ proto-lens-protoc ]; description = "Flink stateful functions SDK"; license = stdenv.lib.licenses.mpl20; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "flip-cmd" = callPackage @@ -92375,6 +92811,24 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "focus_1_0_1_4" = callPackage + ({ mkDerivation, base, QuickCheck, quickcheck-instances, rerebase + , tasty, tasty-hunit, tasty-quickcheck, transformers + }: + mkDerivation { + pname = "focus"; + version = "1.0.1.4"; + sha256 = "1knaiwnxcl2hrx4b3k954rd5v995gxa48db1z9mp58s646ymlmfl"; + libraryHaskellDepends = [ base transformers ]; + testHaskellDepends = [ + QuickCheck quickcheck-instances rerebase tasty tasty-hunit + tasty-quickcheck + ]; + description = "A general abstraction for manipulating elements of container data structures"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "focuslist" = callPackage ({ mkDerivation, base, Cabal, cabal-doctest, containers, doctest , genvalidity-containers, genvalidity-hspec, hedgehog, lens @@ -93124,6 +93578,27 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "formatting_7_1_1" = callPackage + ({ mkDerivation, base, clock, double-conversion, ghc-prim, hspec + , integer-gmp, old-locale, scientific, text, time, transformers + }: + mkDerivation { + pname = "formatting"; + version = "7.1.1"; + sha256 = "1abqyd2k46vrr8xxk6sgcjfm8h7x3d2hk11p8kypi85zplab4rsp"; + libraryHaskellDepends = [ + base clock double-conversion ghc-prim integer-gmp old-locale + scientific text time transformers + ]; + testHaskellDepends = [ + base clock double-conversion ghc-prim hspec integer-gmp old-locale + scientific text time transformers + ]; + description = "Combinator-based type-safe formatting (like printf() or FORMAT)"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "forml" = callPackage ({ mkDerivation, ansi-terminal, base, bytestring, cereal , containers, directory, file-embed, ghc-prim, GraphSCC, hslogger @@ -93459,6 +93934,35 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "fourmolu_0_3_0_0" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, directory + , dlist, exceptions, filepath, ghc-lib-parser, gitrev, hspec + , hspec-discover, HsYAML, HsYAML-aeson, mtl, optparse-applicative + , path, path-io, syb, text + }: + mkDerivation { + pname = "fourmolu"; + version = "0.3.0.0"; + sha256 = "0v89dvcr8l0swj23kkakc39q6lyxjz90rqgwy7m6a5p6iv3h2wms"; + isLibrary = true; + isExecutable = true; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + aeson base bytestring containers directory dlist exceptions + filepath ghc-lib-parser HsYAML HsYAML-aeson mtl syb text + ]; + executableHaskellDepends = [ + base directory ghc-lib-parser gitrev optparse-applicative text + ]; + testHaskellDepends = [ + base containers filepath hspec path path-io text + ]; + testToolDepends = [ hspec-discover ]; + description = "A formatter for Haskell source code"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "fpco-api" = callPackage ({ mkDerivation, aeson, attoparsec, base, base64-bytestring , blaze-html, bytestring, cereal, containers, data-default, deepseq @@ -95917,6 +96421,8 @@ self: { benchmarkHaskellDepends = [ base fused-effects-random gauge ]; description = "High-quality random number generation as an effect"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "fused-effects-optics" = callPackage @@ -96075,6 +96581,8 @@ self: { pname = "futhark"; version = "0.18.1"; sha256 = "12nbksr3qywqg88cj4yy5z9qnn24cdxjg8ym70bxym8a8m52928c"; + revision = "1"; + editedCabalFile = "0598rwva6svavwka9m6vr1raz1x8wvn9bfvcc7j8kvdh6m6y9w4m"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -96095,6 +96603,8 @@ self: { ]; description = "An optimising compiler for a functional, array-oriented language"; license = stdenv.lib.licenses.isc; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "futhask" = callPackage @@ -96782,12 +97292,12 @@ self: { }) {}; "gasp" = callPackage - ({ mkDerivation, base, binary, containers, mtl }: + ({ mkDerivation, base, binary, containers, mtl, QuickCheck }: mkDerivation { pname = "gasp"; - version = "1.2.0.0"; - sha256 = "0dq867kgil7xp7wqk8ylmx9ninxrqwc375g5l13iskvyz1li7474"; - libraryHaskellDepends = [ base binary containers mtl ]; + version = "1.3.0.0"; + sha256 = "0dhna3mj7mdyk1n0x3barpn5g4hkjl9fnbr403xym1dm8rl7r7hg"; + libraryHaskellDepends = [ base binary containers mtl QuickCheck ]; description = "A framework of algebraic classes"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -99571,20 +100081,20 @@ self: { ({ mkDerivation, base, blaze-svg, bytestring, containers , diagrams-lib, diagrams-svg, filepath, ghc-events, hashable, lens , mtl, optparse-applicative, parsec, regex-base, regex-pcre-builtin - , SVGFonts, template-haskell, th-lift, transformers - , unordered-containers + , SVGFonts, template-haskell, text, th-lift, th-lift-instances + , transformers, unordered-containers }: mkDerivation { pname = "ghc-events-analyze"; - version = "0.2.7"; - sha256 = "01395ncya596fw6il2ddlziwcygvahswx0q9fjy7j7v7jqgzva3x"; + version = "0.2.8"; + sha256 = "1aam80l76dy76b8wbkjnbmxkmbgvczs591yjnbb9rm5bv9ggcb29"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ base blaze-svg bytestring containers diagrams-lib diagrams-svg filepath ghc-events hashable lens mtl optparse-applicative parsec - regex-base regex-pcre-builtin SVGFonts template-haskell th-lift - transformers unordered-containers + regex-base regex-pcre-builtin SVGFonts template-haskell text + th-lift th-lift-instances transformers unordered-containers ]; description = "Analyze and visualize event logs"; license = stdenv.lib.licenses.bsd3; @@ -102105,6 +102615,32 @@ self: { broken = true; }) {gtk-mac-integration-gtk3 = null;}; + "gi-gtksheet" = callPackage + ({ mkDerivation, base, bytestring, Cabal, containers, gi-atk + , gi-cairo, gi-gdk, gi-glib, gi-gobject, gi-gtk, gi-pango, gtksheet + , haskell-gi, haskell-gi-base, haskell-gi-overloading, text + , transformers + }: + mkDerivation { + pname = "gi-gtksheet"; + version = "4.0.1"; + sha256 = "19fyjymh5b1q1ln0nnqwwwf0zsdjy0bfn5nhi133q9j195bhb7l9"; + setupHaskellDepends = [ + base Cabal gi-atk gi-cairo gi-gdk gi-glib gi-gobject gi-gtk + gi-pango haskell-gi + ]; + libraryHaskellDepends = [ + base bytestring containers gi-atk gi-cairo gi-gdk gi-glib + gi-gobject gi-gtk gi-pango haskell-gi haskell-gi-base + haskell-gi-overloading text transformers + ]; + libraryPkgconfigDepends = [ gtksheet ]; + description = "GtkSheet bindings"; + license = stdenv.lib.licenses.lgpl21; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {gtksheet = null;}; + "gi-gtksource" = callPackage ({ mkDerivation, base, bytestring, Cabal, containers, gi-atk , gi-cairo, gi-gdk, gi-gdkpixbuf, gi-gio, gi-glib, gi-gobject @@ -102885,8 +103421,8 @@ self: { }: mkDerivation { pname = "git-brunch"; - version = "1.4.1.0"; - sha256 = "0jq2i115djl5skkjzxxqdkp2rnw6871xn4aj4ryx9mgfnsd6dfgi"; + version = "1.4.2.0"; + sha256 = "0zbbd3hga2qh043xw6igsjk14wh0d3hq5naxich88wg1ig4w28j5"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -103105,8 +103641,8 @@ self: { }: mkDerivation { pname = "git-mediate"; - version = "1.0.8"; - sha256 = "0g81v358vqlfsz5bx8arnzjn0bnjd9k835mn8z0kp4d341z0y8l1"; + version = "1.0.8.1"; + sha256 = "0ry437v01vc3d462zgg0jn113l24lcry5lgdv2y0rmyy6wfq8i7f"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -108029,8 +108565,8 @@ self: { }: mkDerivation { pname = "gopro-plus"; - version = "0.3.1.1"; - sha256 = "0gjdz5c165hk4nbynp3s633kzivq62y3riz45w0l0k2qrirpkd14"; + version = "0.4.1.0"; + sha256 = "1xim8kr58nnpfh1sj66p73alm1l8wwxqafx5b77wc51dwrjyz1p8"; libraryHaskellDepends = [ aeson base bytestring containers exceptions filepath generic-deriving lens lens-aeson mtl random retry text time @@ -108284,8 +108820,8 @@ self: { }: mkDerivation { pname = "gotta-go-fast"; - version = "0.3.0.0"; - sha256 = "067jmp0p21bw7mpsrlpawphjmlq9f85lsfiihp37pvs8sxb36lg9"; + version = "0.3.0.6"; + sha256 = "1cv8l54wg2gsbk7wr0zmw47k9v8vs5dzj4k1wp5b17p3wp92s1av"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -109237,6 +109773,8 @@ self: { ]; description = "A client for Haskell programs to query a GraphQL API"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "graphql-utils" = callPackage @@ -111820,6 +112358,8 @@ self: { executableHaskellDepends = [ base optparse-applicative text ]; description = "A blog system"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "hacanon-light" = callPackage @@ -112979,6 +113519,35 @@ self: { license = stdenv.lib.licenses.gpl3; }) {}; + "hadolint_1_18_2" = callPackage + ({ mkDerivation, aeson, async, base, bytestring, containers + , directory, filepath, gitrev, hspec, HsYAML, HUnit + , language-docker, megaparsec, mtl, optparse-applicative, parallel + , ShellCheck, split, text, void + }: + mkDerivation { + pname = "hadolint"; + version = "1.18.2"; + sha256 = "0ifcnpbc667x7cl44fkdj4j968zpyz57jh8b5givqdnmvw9x8wf5"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson async base bytestring containers directory filepath HsYAML + language-docker megaparsec mtl parallel ShellCheck split text void + ]; + executableHaskellDepends = [ + base containers gitrev language-docker megaparsec + optparse-applicative text + ]; + testHaskellDepends = [ + aeson base bytestring hspec HsYAML HUnit language-docker megaparsec + ShellCheck split text + ]; + description = "Dockerfile Linter JavaScript API"; + license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "hadoop-formats" = callPackage ({ mkDerivation, attoparsec, base, bytestring, filepath, snappy , text, vector @@ -113833,6 +114402,19 @@ self: { broken = true; }) {}; + "hakyll-process" = callPackage + ({ mkDerivation, base, bytestring, hakyll, typed-process }: + mkDerivation { + pname = "hakyll-process"; + version = "0.0.2.0"; + sha256 = "03s51ql10g6vjsrzwxa2jwff4wckp7vf3sg9r6hdsbh30l4720il"; + libraryHaskellDepends = [ base bytestring hakyll typed-process ]; + description = "Hakyll compiler for arbitrary external processes"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "hakyll-sass" = callPackage ({ mkDerivation, aeson-pretty, base, data-default-class, filepath , hakyll, hsass @@ -114229,6 +114811,8 @@ self: { ]; testHaskellDepends = [ base bytestring ]; license = "GPL"; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "hamid" = callPackage @@ -115318,6 +115902,35 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "happstack-server_7_7_0" = callPackage + ({ mkDerivation, base, base64-bytestring, blaze-html, bytestring + , containers, directory, exceptions, extensible-exceptions + , filepath, hslogger, html, HUnit, monad-control, mtl, network + , network-bsd, network-uri, old-locale, parsec, process, semigroups + , sendfile, syb, system-filepath, text, threads, time, transformers + , transformers-base, transformers-compat, unix, utf8-string, xhtml + , zlib + }: + mkDerivation { + pname = "happstack-server"; + version = "7.7.0"; + sha256 = "0jyjnksgwvasnhwwn8scqms1kja4hzlbpn0lmyr6yng5n4989d0x"; + libraryHaskellDepends = [ + base base64-bytestring blaze-html bytestring containers directory + exceptions extensible-exceptions filepath hslogger html + monad-control mtl network network-bsd network-uri old-locale parsec + process semigroups sendfile syb system-filepath text threads time + transformers transformers-base transformers-compat unix utf8-string + xhtml zlib + ]; + testHaskellDepends = [ + base bytestring containers HUnit parsec zlib + ]; + description = "Web related tools and services"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "happstack-server-tls" = callPackage ({ mkDerivation, base, bytestring, extensible-exceptions , happstack-server, hslogger, HsOpenSSL, network, openssl, sendfile @@ -115325,8 +115938,8 @@ self: { }: mkDerivation { pname = "happstack-server-tls"; - version = "7.2.1"; - sha256 = "1cihzjxl1v5sgmaxn8qny8b9yzm7p1gccgy1iaa3dk2jpl07a2dp"; + version = "7.2.1.1"; + sha256 = "0bply7dxz2046h0v0ydkicjvl491k0llapf2shxjqnskjjr5rqnk"; libraryHaskellDepends = [ base bytestring extensible-exceptions happstack-server hslogger HsOpenSSL network sendfile time unix @@ -116992,6 +117605,8 @@ self: { doHaddock = false; description = "Cabal package script generator for Travis-CI"; license = stdenv.lib.licenses.gpl3Plus; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "haskell-cnc" = callPackage @@ -117189,8 +117804,8 @@ self: { ({ mkDerivation, base, syb, template-haskell }: mkDerivation { pname = "haskell-exp-parser"; - version = "0.1.3"; - sha256 = "0cswfpdw6sgmd0fhdpyfi2nk0mhvl8xpv4zfkl9l3wdk5ipbcxdf"; + version = "0.1.4"; + sha256 = "0adz1bazcayyhlwpcqn7nn73pv1mwmagslq0b3mjpgr9wg8lx2ys"; libraryHaskellDepends = [ base template-haskell ]; testHaskellDepends = [ base syb template-haskell ]; description = "Simple parser parser from Haskell to TemplateHaskell expressions"; @@ -119310,8 +119925,8 @@ self: { }: mkDerivation { pname = "haskellish"; - version = "0.2.3"; - sha256 = "188sfmb9rcp0k75x94ld0jv91kxbyfqkk7hnw5wyw8ln5y0fmr3w"; + version = "0.2.3.1"; + sha256 = "0285mk3s1gl0xxwcqd22v800pcg75ml676nzs5pb96ybfniqksl0"; libraryHaskellDepends = [ base containers haskell-src-exts mtl template-haskell ]; @@ -119669,7 +120284,7 @@ self: { license = stdenv.lib.licenses.publicDomain; }) {}; - "haskoin-core_0_15_0" = callPackage + "haskoin-core_0_17_0" = callPackage ({ mkDerivation, aeson, array, base, base16-bytestring, bytestring , cereal, conduit, containers, cryptonite, deepseq, entropy , hashable, hspec, hspec-discover, HUnit, lens, lens-aeson, memory @@ -119679,8 +120294,8 @@ self: { }: mkDerivation { pname = "haskoin-core"; - version = "0.15.0"; - sha256 = "1mvhp7khbjf3wxvgwgdxgbl8ylb4vhgiirq50dwi62p65w75xw1v"; + version = "0.17.0"; + sha256 = "0zsi5390ig611clahj3p2l3h3w7b3lzl3dfiqliihanivlnrmkag"; libraryHaskellDepends = [ aeson array base base16-bytestring bytestring cereal conduit containers cryptonite deepseq entropy hashable hspec memory mtl @@ -119757,7 +120372,7 @@ self: { broken = true; }) {}; - "haskoin-node_0_16_0" = callPackage + "haskoin-node_0_17_0" = callPackage ({ mkDerivation, base, base64, bytestring, cereal, conduit , conduit-extra, containers, data-default, hashable, haskoin-core , hspec, hspec-discover, HUnit, monad-logger, mtl, network, nqe @@ -119767,8 +120382,8 @@ self: { }: mkDerivation { pname = "haskoin-node"; - version = "0.16.0"; - sha256 = "0az8lv5xkbhfff9hq3r0kndz2hp3q6f1h6za85qj8v5755za61c8"; + version = "0.17.0"; + sha256 = "0lgphbjam3ml9j1q39ddv2cwz35vfvmbnxsf570s91ja86lyfbhy"; libraryHaskellDepends = [ base bytestring cereal conduit conduit-extra containers data-default hashable haskoin-core monad-logger mtl network nqe @@ -119848,8 +120463,8 @@ self: { }: mkDerivation { pname = "haskoin-store"; - version = "0.37.5"; - sha256 = "0ac1znif59fzcxcl3nmvrv6v49rzlcgsv138zgjnk7zxarp8alyg"; + version = "0.38.0"; + sha256 = "0hw14mxlz6pbf9694vknypq6q60n8qglixx6sp1h43nqpmc52q8q"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -119890,8 +120505,8 @@ self: { }: mkDerivation { pname = "haskoin-store-data"; - version = "0.37.5"; - sha256 = "1p8hsnwr0h0sbnwg1kwbal36q4bh3s0daz1a5n2c8xal5xdkbdra"; + version = "0.38.0"; + sha256 = "05218mbwdzz61c0d4fwj9pyr69zb4jc9fir2mp7bjfyrnymb08f5"; libraryHaskellDepends = [ aeson base bytestring cereal containers data-default deepseq hashable haskoin-core http-client http-types lens mtl network @@ -120894,8 +121509,8 @@ self: { }: mkDerivation { pname = "hasql-dynamic-statements"; - version = "0.2.0.3"; - sha256 = "06xmqqakwji7qy26srys7i8y3mjbyg5qjgzhs56h64ccbs352i56"; + version = "0.3.1"; + sha256 = "1fs5bfxk0yd2j4iygc8m0nx9hwfmvsxyhdanclass0dxr40pqyhc"; libraryHaskellDepends = [ base bytestring containers hasql hasql-implicits ptr ]; @@ -121666,24 +122281,24 @@ self: { "haxl" = callPackage ({ mkDerivation, aeson, base, binary, bytestring, containers - , deepseq, exceptions, filepath, ghc-prim, hashable, HUnit, pretty - , stm, test-framework, test-framework-hunit, text, time - , transformers, unordered-containers, vector + , deepseq, exceptions, filepath, ghc-prim, hashable, hashtables + , HUnit, pretty, stm, test-framework, test-framework-hunit, text + , time, transformers, unordered-containers, vector }: mkDerivation { pname = "haxl"; - version = "2.1.2.0"; - sha256 = "1lwm9rs9r0qs32n3nw49j3sz41qzq2wxv0a9gpiziaw0sjlk00jy"; + version = "2.3.0.0"; + sha256 = "149k26iaas3sb9qyagzjkb0n86k34nf0r06fyvvqyap1w476fd3c"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson base binary bytestring containers deepseq exceptions filepath - ghc-prim hashable pretty stm text time transformers + ghc-prim hashable hashtables pretty stm text time transformers unordered-containers vector ]; testHaskellDepends = [ aeson base binary bytestring containers deepseq filepath hashable - HUnit test-framework test-framework-hunit text time + hashtables HUnit test-framework test-framework-hunit text time unordered-containers ]; description = "A Haskell library for efficient, concurrent, and concise data access"; @@ -122918,6 +123533,8 @@ self: { ]; description = "More informative parser"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "headergen" = callPackage @@ -123541,8 +124158,8 @@ self: { }: mkDerivation { pname = "hedis"; - version = "0.12.14"; - sha256 = "14qd248ccijakksbaj72nwz8dx8qg4bifla3p0vsm6v96xb2qjbw"; + version = "0.12.15"; + sha256 = "0zkavyx4nbdrwl5sywl2rn9lmakpfw2jgs8sjqzjsnnkbk62i33j"; libraryHaskellDepends = [ async base bytestring bytestring-lexing deepseq errors exceptions HTTP mtl network network-uri resource-pool scanner stm text time @@ -124709,14 +125326,14 @@ self: { }: mkDerivation { pname = "heterocephalus"; - version = "1.0.5.3"; - sha256 = "0kvrv15xm6igd6nkyfij1h982jqpbf61pzinv8jdb4fcjqwf08s7"; + version = "1.0.5.4"; + sha256 = "06fv3bhnj80cjli1v2drkpkmx76i81cpawlci7agcxxd8fd8zplc"; libraryHaskellDepends = [ base blaze-html blaze-markup containers dlist mtl parsec shakespeare template-haskell text transformers ]; testHaskellDepends = [ base doctest Glob ]; - description = "A type-safe template engine for working with popular front end development tools"; + description = "A type-safe template engine for working with front end development tools"; license = stdenv.lib.licenses.mit; }) {}; @@ -128353,8 +128970,8 @@ self: { }: mkDerivation { pname = "hlint"; - version = "3.2"; - sha256 = "0g3ay30dwr2v22bybapryl0ykjyqs5ym1i1p7jfky7lp20ri9x1z"; + version = "3.2.1"; + sha256 = "16r2s65238yaqkiqhc31zwgv5r9743d5qrdwkahn9zpwj0x0sp5f"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -131333,8 +131950,6 @@ self: { ]; description = "hpack's dhalling"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; - broken = true; }) {}; "hpaco" = callPackage @@ -133034,8 +133649,8 @@ self: { }: mkDerivation { pname = "hs-server-starter"; - version = "0.1.1.0"; - sha256 = "1cki3c6fl7yjw9vww4h9vd68dnci5q8f5c1i3ip8kyv53s9rgbi3"; + version = "0.1.2.0"; + sha256 = "05i1arpzs2mrzgbd87k3a6dwsvf5z7r4vwd3m0m34qps3rwlk78m"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base directory network ]; @@ -134976,15 +135591,15 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) lua5_3;}; - "hslua_1_2_0" = callPackage + "hslua_1_3_0" = callPackage ({ mkDerivation, base, bytestring, containers, exceptions, lua5_3 , mtl, QuickCheck, quickcheck-instances, tasty, tasty-hunit , tasty-quickcheck, text }: mkDerivation { pname = "hslua"; - version = "1.2.0"; - sha256 = "0a295zqpbrv8a2hw7msz5p7brlswag16sg08dyz399ij6b7q5x0h"; + version = "1.3.0"; + sha256 = "1dfh1jax6yrk5sf9q8qnq1qgr541xkwwnz9y3q6r8wflvwlj7cal"; configureFlags = [ "-fsystem-lua" "-f-use-pkgconfig" ]; libraryHaskellDepends = [ base bytestring containers exceptions mtl text @@ -135006,8 +135621,8 @@ self: { }: mkDerivation { pname = "hslua-aeson"; - version = "1.0.3"; - sha256 = "0qqcf9km39bmw29d2s5zw91rxgmmm8nqfnfs5hkhmsgh5kvaal5h"; + version = "1.0.3.1"; + sha256 = "0kvsk0lfhg29dy5qlays9xbd5h9as01mcdbdx2ingx94br6d3h5r"; libraryHaskellDepends = [ aeson base hashable hslua scientific text unordered-containers vector @@ -135059,8 +135674,8 @@ self: { }: mkDerivation { pname = "hslua-module-system"; - version = "0.2.2"; - sha256 = "0swl20v40kkh67vn6546a0afjcsq56x3ww854x3pwypxz1p6dyri"; + version = "0.2.2.1"; + sha256 = "0hk2splyasbplnggknjhlb423axc5b32xq8aq8zal4vvwlqhzvf1"; libraryHaskellDepends = [ base containers directory exceptions hslua temporary ]; @@ -135084,14 +135699,14 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "hslua-module-text_0_3_0" = callPackage + "hslua-module-text_0_3_0_1" = callPackage ({ mkDerivation, base, bytestring, hslua, tasty, tasty-hunit , tasty-lua, text }: mkDerivation { pname = "hslua-module-text"; - version = "0.3.0"; - sha256 = "1y15b38r0xiwcwpzsdr8x8i4y8all2jd3z0j7fvny6lsbna2hf7r"; + version = "0.3.0.1"; + sha256 = "1vmd15n905i2pcsx748hz3h9kv5nnv74y663rj57q8mp0b40cbfl"; libraryHaskellDepends = [ base bytestring hslua text ]; testHaskellDepends = [ base hslua tasty tasty-hunit tasty-lua text @@ -135773,6 +136388,8 @@ self: { pname = "hspec-hedgehog"; version = "0.0.1.2"; sha256 = "17gbr4ssnzjk7nvpsnh47av6vd9wz27ax92xvr4jwyw0z7h2wn13"; + revision = "1"; + editedCabalFile = "1qv2gap0775d2zg8wbd3kq4ypziz05qlz5jfisvl3jfd6jzcf2ad"; libraryHaskellDepends = [ base hedgehog hspec hspec-core HUnit QuickCheck splitmix ]; @@ -136746,20 +137363,21 @@ self: { }) {}; "hstar" = callPackage - ({ mkDerivation, archive-libarchive, archive-sig, base, brotli - , bytestring, bz2, cpphs, lz4-hs, lzlib, lzma, lzo - , optparse-applicative, zlib, zstd + ({ mkDerivation, base, brotli, bytestring, bz2, composition-prelude + , cpphs, dir-traverse, libarchive, lz4-hs, lzlib, lzma, lzo + , optparse-applicative, process, zlib, zstd }: mkDerivation { pname = "hstar"; - version = "0.1.0.4"; - sha256 = "1c28xbcg8lmh7zkpl8xpg30niv6adjk8zggwcxi72ylb9z2y3fqr"; + version = "0.1.0.5"; + sha256 = "1cp7g4c38psfb9nlq8481dqazl7shy8zswli7058mgyf2xbalw0y"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; executableHaskellDepends = [ - archive-libarchive archive-sig base brotli bytestring bz2 lz4-hs - lzlib lzma lzo optparse-applicative zlib zstd + base brotli bytestring bz2 composition-prelude dir-traverse + libarchive lz4-hs lzlib lzma lzo optparse-applicative process zlib + zstd ]; executableToolDepends = [ cpphs ]; description = "Haskell version of tar CLI utility"; @@ -138216,6 +138834,8 @@ self: { ]; description = "Glue code for http-client and websockets"; license = stdenv.lib.licenses.cc0; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "http-common" = callPackage @@ -138324,42 +138944,24 @@ self: { }) {}; "http-conduit-downloader" = callPackage - ({ mkDerivation, base, bytestring, conduit, connection - , data-default, HsOpenSSL, http-client, http-conduit, http-types - , mtl, network, network-uri, resourcet, text, time, zlib + ({ mkDerivation, base, bytestring, data-default, HsOpenSSL + , http-client, http-types, network, network-uri, text, time, zlib }: mkDerivation { pname = "http-conduit-downloader"; - version = "1.0.33"; - sha256 = "07pn2p143rfmvax3zx53hlgh0rfynn60g0z6cw6vazrxap4v3pr3"; + version = "1.1.2"; + sha256 = "188rhadf1dya2iyvcvfp1xvnhjmhkf06i606mrkrlmzbds2kb8hh"; libraryHaskellDepends = [ - base bytestring conduit connection data-default HsOpenSSL - http-client http-conduit http-types mtl network network-uri - resourcet text time zlib + base bytestring data-default HsOpenSSL http-client http-types + network network-uri text time zlib ]; description = "HTTP downloader tailored for web-crawler needs"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "http-date" = callPackage - ({ mkDerivation, array, attoparsec, base, bytestring, doctest - , hspec, old-locale, time - }: - mkDerivation { - pname = "http-date"; - version = "0.0.9"; - sha256 = "0dxrlwaqdimgxr8nziyzgqsrg44dl9gxa060cg0k7ndpnlpcbjwa"; - revision = "1"; - editedCabalFile = "0pmmbxcqamyrg71vyfjqi0cvzv8wvnx12mw3yxw7fnqg55fmagy4"; - libraryHaskellDepends = [ array attoparsec base bytestring time ]; - testHaskellDepends = [ - base bytestring doctest hspec old-locale time - ]; - description = "HTTP Date parser/formatter"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "http-date_0_0_10" = callPackage ({ mkDerivation, array, attoparsec, base, bytestring, doctest , hspec, old-locale, time }: @@ -138373,7 +138975,6 @@ self: { ]; description = "HTTP Date parser/formatter"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "http-directory" = callPackage @@ -139773,20 +140374,22 @@ self: { "hurl" = callPackage ({ mkDerivation, async, base, base64-bytestring, bytestring - , connection, containers, directory, filepath, http-client - , http-client-tls, http-types, network-uri, process, text + , containers, directory, filepath, HsOpenSSL, http-client + , http-client-openssl, http-types, io-streams, network-uri + , openssl-streams, process, regex, regex-tdfa, text, time , xml-conduit, zlib }: mkDerivation { pname = "hurl"; - version = "1.4.1.1"; - sha256 = "0h4fzkdpsjsph6685sg78kwvajf7615y8dbcn9n88jwdq6j8j522"; + version = "1.4.2.0"; + sha256 = "19qf4akwx7aazzy86zhkm5z60342hz07msqxir6ism98dd33fpwl"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - async base base64-bytestring bytestring connection containers - directory filepath http-client http-client-tls http-types - network-uri process text xml-conduit zlib + async base base64-bytestring bytestring containers directory + filepath HsOpenSSL http-client http-client-openssl http-types + io-streams network-uri openssl-streams process regex regex-tdfa + text time xml-conduit zlib ]; executableHaskellDepends = [ base directory network-uri ]; description = "Haskell URL resolver"; @@ -140040,46 +140643,6 @@ self: { }) {}; "hw-balancedparens" = callPackage - ({ mkDerivation, base, bytestring, criterion, deepseq, directory - , doctest, doctest-discover, generic-lens, hedgehog, hspec - , hspec-discover, hw-bits, hw-excess, hw-fingertree - , hw-hspec-hedgehog, hw-int, hw-prim, hw-rankselect-base, lens - , mmap, optparse-applicative, transformers, vector - }: - mkDerivation { - pname = "hw-balancedparens"; - version = "0.4.1.0"; - sha256 = "1ddxg00pwjvlrd4zdx9b9y7hm8rgxsxkvzzvwc34p2y75rivp21l"; - revision = "1"; - editedCabalFile = "0mc9lmjc3xrad4jlc9v66078362a791hnrrg9bclg1nq7jicfxgx"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base deepseq hedgehog hspec hw-bits hw-excess hw-fingertree hw-int - hw-prim hw-rankselect-base vector - ]; - executableHaskellDepends = [ - base bytestring generic-lens hw-bits hw-prim lens mmap - optparse-applicative vector - ]; - testHaskellDepends = [ - base directory doctest doctest-discover hedgehog hspec hw-bits - hw-hspec-hedgehog hw-int hw-prim hw-rankselect-base transformers - vector - ]; - testToolDepends = [ doctest-discover hspec-discover ]; - benchmarkHaskellDepends = [ - base criterion deepseq directory generic-lens hedgehog hw-bits - hw-prim lens vector - ]; - doHaddock = false; - description = "Balanced parentheses"; - license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; - broken = true; - }) {}; - - "hw-balancedparens_0_4_1_1" = callPackage ({ mkDerivation, base, bytestring, criterion, deepseq, directory , doctest, doctest-discover, generic-lens, hedgehog, hspec , hspec-discover, hw-bits, hw-excess, hw-fingertree @@ -140492,10 +141055,8 @@ self: { }: mkDerivation { pname = "hw-json"; - version = "1.3.2.1"; - sha256 = "11lf4nxnkk8l25a44g1pkr9j1w03l69gqjgli5yfj6k68lzml7bf"; - revision = "2"; - editedCabalFile = "0ks3aj2xdphq9sp5vsblyz13fmwl5cb402awqy3pz3d21g8fl4sn"; + version = "1.3.2.2"; + sha256 = "03h5zv94ndsz4vh0jql8rg8pl95rbf8xkyzvr3r55i3kpmb85sbg"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -141189,6 +141750,24 @@ self: { broken = true; }) {}; + "hwk" = callPackage + ({ mkDerivation, base, directory, extra, filepath, hint + , simple-cmd-args + }: + mkDerivation { + pname = "hwk"; + version = "0.5"; + sha256 = "1nn8021nf7pwr8r0ffvsr3yjvjgv4f15l7j8s9pisi4n280lv8h0"; + isLibrary = false; + isExecutable = true; + enableSeparateDataOutput = true; + executableHaskellDepends = [ + base directory extra filepath hint simple-cmd-args + ]; + description = "Commandline text processing with Haskell functions"; + license = stdenv.lib.licenses.mit; + }) {}; + "hworker" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, hedis, hspec , hspec-contrib, HUnit, text, time, uuid @@ -142952,8 +143531,8 @@ self: { pname = "identicon-style-squares"; version = "0.1.0.1"; sha256 = "1x456v7fb211f7ciipp2bfn9fvh5w4i34bl5mjw7bkn7hgsaa3x6"; - revision = "2"; - editedCabalFile = "1bi5sn62z23j9n7bxlaz5qiwk52v7sfr70bk0by9vk6nlylli8r1"; + revision = "3"; + editedCabalFile = "0jri78n8xggipikhp6p4l4i2zwjn4fdydbv730w01linfg1h6w68"; libraryHaskellDepends = [ base identicon JuicyPixels polyvariadic ]; @@ -144024,38 +144603,41 @@ self: { }) {}; "imm" = callPackage - ({ mkDerivation, aeson, async, atom-conduit, avro, base-noprelude - , binary, blaze-html, blaze-markup, bytestring, conduit, containers - , dhall, directory, fast-logger, filepath, hashable, microlens - , mime-mail, monad-time, opml-conduit, optparse-applicative, pipes - , pipes-bytestring, prettyprinter, prettyprinter-ansi-terminal - , refined, relude, rss-conduit, safe, safe-exceptions, stm - , stm-chans, text, time, timerep, typed-process, uri-bytestring + ({ mkDerivation, aeson, aeson-pretty, async, atom-conduit + , base-noprelude, beam-core, beam-sqlite, blaze-html, blaze-markup + , bytestring, chronos, co-log, conduit, containers, dhall + , directory, filepath, http-client, http-types, microlens + , mime-mail, monad-time, optparse-applicative, parsec, parsers + , pipes, pipes-bytestring, pipes-http, prettyprinter + , prettyprinter-ansi-terminal, refined, relude, rss-conduit, safe + , safe-exceptions, sqlite-simple, stm, stm-chans, streamly, text + , time, timerep, typed-process, typerep-map, uri-bytestring , xml-conduit, xml-types }: mkDerivation { pname = "imm"; - version = "1.10.0.0"; - sha256 = "0kjh6j1lw4ixgz5jkmaqfxi4rmmd5k2nq4wdr4c0yw26kwvgv003"; + version = "2.0.0.0"; + sha256 = "1qkq80iiv1yql59a8vly1nv36isnh2wkdzxgawjh22xqn9xn0csd"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ - aeson async atom-conduit avro base-noprelude binary conduit - containers dhall directory filepath hashable microlens monad-time - pipes pipes-bytestring prettyprinter prettyprinter-ansi-terminal - refined relude rss-conduit safe-exceptions text time timerep + aeson aeson-pretty atom-conduit base-noprelude conduit containers + dhall directory filepath http-client microlens parsec parsers pipes + pipes-bytestring prettyprinter prettyprinter-ansi-terminal refined + relude rss-conduit safe safe-exceptions text time timerep typed-process uri-bytestring xml-conduit xml-types ]; executableHaskellDepends = [ - aeson async atom-conduit avro base-noprelude blaze-html - blaze-markup bytestring conduit containers dhall directory - fast-logger filepath mime-mail opml-conduit optparse-applicative - pipes pipes-bytestring prettyprinter prettyprinter-ansi-terminal - refined relude rss-conduit safe safe-exceptions stm stm-chans text - time typed-process uri-bytestring xml-conduit xml-types + aeson async base-noprelude beam-core beam-sqlite blaze-html + blaze-markup bytestring chronos co-log conduit containers dhall + directory filepath http-types microlens mime-mail monad-time + optparse-applicative pipes pipes-bytestring pipes-http + prettyprinter prettyprinter-ansi-terminal refined relude safe + safe-exceptions sqlite-simple stm stm-chans streamly text time + typed-process typerep-map uri-bytestring xml-conduit xml-types ]; - description = "Execute arbitrary callbacks for each element of RSS/Atom feeds"; + description = "Execute arbitrary actions for each item from RSS/Atom feeds"; license = stdenv.lib.licenses.cc0; hydraPlatforms = stdenv.lib.platforms.none; broken = true; @@ -144242,8 +144824,8 @@ self: { }: mkDerivation { pname = "implicit-hie"; - version = "0.1.1.0"; - sha256 = "048y1wbwcp1vs4shgfzvcmbgg8fnm0pw2i7a8488b5kshfzf9syb"; + version = "0.1.2.0"; + sha256 = "0scg27iz2yhkfrsj5hw11qi1gdivgnskmcl4v4111zlvyy14lhc9"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -144465,6 +145047,27 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "in-other-words" = callPackage + ({ mkDerivation, async, base, exceptions, hspec, hspec-discover + , monad-control, mtl, stm, transformers, transformers-base + }: + mkDerivation { + pname = "in-other-words"; + version = "0.1.0.0"; + sha256 = "06ipmkbgncsgcq5rfyn0v4plhbbrzrcx3r4xr1f3f6xv760pfyra"; + libraryHaskellDepends = [ + async base exceptions monad-control mtl stm transformers + transformers-base + ]; + testHaskellDepends = [ + async base exceptions hspec monad-control mtl stm transformers + transformers-base + ]; + testToolDepends = [ hspec-discover ]; + description = "A higher-order effect system where the sky's the limit"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "inc-ref" = callPackage ({ mkDerivation, base, stm }: mkDerivation { @@ -145441,8 +146044,8 @@ self: { }: mkDerivation { pname = "inline-c"; - version = "0.9.1.2"; - sha256 = "1lvsjjxnjwfnqlq4i5mz2xizpx052nq25wjgm47302akpjzpym6n"; + version = "0.9.1.3"; + sha256 = "1b2dcyg6b15q5n7k9k391y78wblqlvkrwxr8hbnp0y6x8h8l8ma8"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -145961,6 +146564,8 @@ self: { testHaskellDepends = [ base containers doctest primitive ]; description = "Advent of Code 2019 intcode interpreter"; license = stdenv.lib.licenses.isc; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "integer-gmp_1_0_3_0" = callPackage @@ -147594,26 +148199,6 @@ self: { }) {}; "irc-client" = callPackage - ({ mkDerivation, base, bytestring, conduit, connection, containers - , contravariant, exceptions, irc-conduit, irc-ctcp, mtl - , network-conduit-tls, old-locale, profunctors, stm, stm-chans - , text, time, tls, transformers, x509, x509-store, x509-validation - }: - mkDerivation { - pname = "irc-client"; - version = "1.1.1.1"; - sha256 = "08s1qb9dc6icz9fxfp5swcx817685vj833l8ijpf1gdgyzw6wfdq"; - libraryHaskellDepends = [ - base bytestring conduit connection containers contravariant - exceptions irc-conduit irc-ctcp mtl network-conduit-tls old-locale - profunctors stm stm-chans text time tls transformers x509 - x509-store x509-validation - ]; - description = "An IRC client library"; - license = stdenv.lib.licenses.mit; - }) {}; - - "irc-client_1_1_2_0" = callPackage ({ mkDerivation, base, bytestring, conduit, connection, containers , contravariant, exceptions, irc-conduit, irc-ctcp, mtl , network-conduit-tls, old-locale, profunctors, stm, stm-chans @@ -147631,7 +148216,6 @@ self: { ]; description = "An IRC client library"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "irc-colors" = callPackage @@ -149015,14 +149599,14 @@ self: { }: mkDerivation { pname = "j"; - version = "0.1.0.0"; - sha256 = "1jscbh7riqkfks72xfgqmf04zhr0l8mncnmxmxv53l8v4ymigmvl"; - revision = "1"; - editedCabalFile = "1hx5gz8l12q8kswy59pwyp49a226nxvbg8jkwj746l8wgxp692sy"; + version = "0.1.1.0"; + sha256 = "0a3xl4sr5s7436z8fnjg6vknk7wi202b8ryvswxrv1ks49h2zg8s"; libraryHaskellDepends = [ base bytestring repa unix ]; testHaskellDepends = [ base bytestring repa tasty tasty-hunit ]; description = "J in Haskell"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "j2hs" = callPackage @@ -149952,12 +150536,16 @@ self: { }) {}; "joint" = callPackage - ({ mkDerivation, base, transformers }: + ({ mkDerivation, adjunctions, base, comonad, distributive + , transformers + }: mkDerivation { pname = "joint"; - version = "0.1.7"; - sha256 = "193ygi06hfn1smdhh7fz74lz2gffcvg66cxp6qlvi7m3rbhm1f1l"; - libraryHaskellDepends = [ base transformers ]; + version = "0.1.8"; + sha256 = "174i51nlck81h9pc9jgmd0yj3d6xpvza0i4a8y4f1fpnz1zrqxg5"; + libraryHaskellDepends = [ + adjunctions base comonad distributive transformers + ]; description = "Trying to compose non-composable"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -151285,6 +151873,28 @@ self: { broken = true; }) {}; + "jsonifier" = callPackage + ({ mkDerivation, aeson, base, buffer-builder, bytestring, gauge + , hedgehog, numeric-limits, ptr-poker, rerebase, scientific, text + , text-builder + }: + mkDerivation { + pname = "jsonifier"; + version = "0.1.0.4"; + sha256 = "1fkjib6v9kk5vbw0sh5cb0wr0m3mxf878lcbj3jc0xyalpvz07ni"; + libraryHaskellDepends = [ + base bytestring ptr-poker scientific text + ]; + testHaskellDepends = [ aeson hedgehog numeric-limits rerebase ]; + benchmarkHaskellDepends = [ + aeson buffer-builder gauge rerebase text-builder + ]; + description = "Fast and simple JSON encoding toolkit"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "jsonpath" = callPackage ({ mkDerivation, aeson, aeson-casing, attoparsec, base, bytestring , file-embed, hspec, hspec-attoparsec, hspec-discover, text @@ -152373,8 +152983,8 @@ self: { }: mkDerivation { pname = "katip-datadog"; - version = "0.1.0.0"; - sha256 = "04gj1svwlndid1j0c14q82y42gad40l0wn2mr5mbhc9b921mncsl"; + version = "0.2.0.0"; + sha256 = "0qcbg2nvm2ig02x05invjzdrrdgxcq06gask28vzg6g72qc48ar3"; libraryHaskellDepends = [ aeson base binary bytestring connection katip network resource-pool retry safe-exceptions text time @@ -152399,8 +153009,8 @@ self: { }: mkDerivation { pname = "katip-elasticsearch"; - version = "0.6.0.0"; - sha256 = "05pvmx2p2h34qig392z6k0ar3dk6cc3vgzsvxhijwp5xfja52ha4"; + version = "0.7.0.0"; + sha256 = "0m0snqxnaaqy33vbfyrcnbpc6vls3p8jby69z3wcyb2d5lxwm8d9"; libraryHaskellDepends = [ aeson async base bloodhound bytestring exceptions http-client http-types katip retry safe-exceptions scientific semigroups stm @@ -152833,6 +153443,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "keep-alive" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "keep-alive"; + version = "0.1.1.0"; + sha256 = "1h1x28adh7y561pmmbw064vyz9qx013spkcr8pwg9hjcnzn03yvw"; + libraryHaskellDepends = [ base ]; + testHaskellDepends = [ base ]; + description = "TCP keep alive implementation"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "keera-callbacks" = callPackage ({ mkDerivation, base, mtl }: mkDerivation { @@ -153812,6 +154434,8 @@ self: { executableHaskellDepends = [ base ]; description = "Advanced keyboard remapping utility"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "kmp-dfa" = callPackage @@ -154118,6 +154742,8 @@ self: { ]; description = "Krank checks your code source comments for important markers"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "krapsh" = callPackage @@ -155899,6 +156525,28 @@ self: { license = stdenv.lib.licenses.gpl3; }) {}; + "language-docker_9_1_2" = callPackage + ({ mkDerivation, base, bytestring, containers, data-default-class + , hspec, HUnit, megaparsec, prettyprinter, QuickCheck, split, text + , time + }: + mkDerivation { + pname = "language-docker"; + version = "9.1.2"; + sha256 = "014rb5jf650fhsmc02v4xc60w7v1261ri1w9ig6dw0xjdgxalvbs"; + libraryHaskellDepends = [ + base bytestring containers data-default-class megaparsec + prettyprinter split text time + ]; + testHaskellDepends = [ + base bytestring containers data-default-class hspec HUnit + megaparsec prettyprinter QuickCheck split text time + ]; + description = "Dockerfile parser, pretty-printer and embedded DSL"; + license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "language-dockerfile" = callPackage ({ mkDerivation, aeson, base, bytestring, directory, filepath, free , Glob, hspec, HUnit, mtl, parsec, pretty, process, QuickCheck @@ -157266,8 +157914,8 @@ self: { }: mkDerivation { pname = "launchdarkly-server-sdk"; - version = "2.0.1"; - sha256 = "19jp9809jrh3swvsji5zgbqg4qg5gayv6bj0svq00wyzaisns3dd"; + version = "2.0.2"; + sha256 = "01c42wyjvnd1wp665p2khjsm1apc9kw3gw6mnlwbdgsimhj8v4z0"; libraryHaskellDepends = [ aeson attoparsec base base16-bytestring bytestring bytestring-conversion clock containers cryptohash exceptions extra @@ -158584,14 +159232,15 @@ self: { }: mkDerivation { pname = "lens-filesystem"; - version = "0.0.0.0"; - sha256 = "0295n9hfdq72c1knx170ccfyi93wp09szahb2q5jym0mcryvdls8"; + version = "0.1.0.1"; + sha256 = "0rx5b49ka3281nnwvfmkdnfrv56kvfkl2h45nf54rdgxj11b7v28"; libraryHaskellDepends = [ base directory filepath lens lens-action ]; testHaskellDepends = [ base directory filepath hspec lens lens-action ]; + description = "Lens interface for your filesystem; still a bit experimental"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; broken = true; @@ -158995,6 +159644,28 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "less-arbitrary" = callPackage + ({ mkDerivation, base, containers, generic-arbitrary, hashable, mtl + , QuickCheck, quickcheck-classes, quickcheck-instances, random + , scientific, text, transformers, unordered-containers, vector + }: + mkDerivation { + pname = "less-arbitrary"; + version = "0.1.0.1"; + sha256 = "1hbiwyk49qqqdfglydywj02ycymdb486nv5cp8710gfwh75i29xw"; + libraryHaskellDepends = [ + base containers generic-arbitrary hashable mtl QuickCheck random + scientific text transformers unordered-containers vector + ]; + testHaskellDepends = [ + base containers generic-arbitrary hashable mtl QuickCheck + quickcheck-classes quickcheck-instances random scientific text + transformers unordered-containers vector + ]; + description = "Linear time testing with variant of Arbitrary class that always terminates"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "level-monad" = callPackage ({ mkDerivation, base, fmlist }: mkDerivation { @@ -159614,6 +160285,8 @@ self: { ]; description = "A Haskell implementation of JSON Web Token (JWT)"; license = stdenv.lib.licenses.mpl20; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "liblastfm" = callPackage @@ -162572,19 +163245,20 @@ self: { broken = true; }) {}; - "little-logger_0_2_0" = callPackage + "little-logger_0_3_1" = callPackage ({ mkDerivation, base, co-log, co-log-core, microlens, mtl, tasty - , tasty-hunit, text + , tasty-hunit, text, unliftio-core }: mkDerivation { pname = "little-logger"; - version = "0.2.0"; - sha256 = "0bzfd0s67g074vp274jq83fdl8z2m87qjkslkxvl29bdlrl3w17b"; + version = "0.3.1"; + sha256 = "0iqnidlv7r2kw6764aq3dlvxbmvm1c7qk8jkgbhbpm5g07k97c68"; libraryHaskellDepends = [ - base co-log co-log-core microlens mtl text + base co-log co-log-core microlens mtl text unliftio-core ]; testHaskellDepends = [ base co-log co-log-core microlens mtl tasty tasty-hunit text + unliftio-core ]; description = "Basic logging based on co-log"; license = stdenv.lib.licenses.bsd3; @@ -162607,17 +163281,17 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "little-rio_0_2_1" = callPackage - ({ mkDerivation, base, exceptions, microlens, microlens-mtl, mtl - , primitive, resourcet, unliftio-core + "little-rio_0_2_2" = callPackage + ({ mkDerivation, base, deepseq, exceptions, microlens + , microlens-mtl, mtl, primitive, resourcet, unliftio-core }: mkDerivation { pname = "little-rio"; - version = "0.2.1"; - sha256 = "1fywk5nva88365p9qv866mf1j4jksarv7d9i39m5xxi764wwpzjp"; + version = "0.2.2"; + sha256 = "1cbadsbhhgls6p46gga4l32b0fhmvp6r9mycaj2srsfdcnwkydr9"; libraryHaskellDepends = [ - base exceptions microlens microlens-mtl mtl primitive resourcet - unliftio-core + base deepseq exceptions microlens microlens-mtl mtl primitive + resourcet unliftio-core ]; description = "When you need just the RIO monad"; license = stdenv.lib.licenses.bsd3; @@ -164525,6 +165199,39 @@ self: { broken = true; }) {}; + "longshot" = callPackage + ({ mkDerivation, base, base16-bytestring, blake2, blake3 + , bytestring, containers, cryptohash-sha256, cryptonite, deepseq + , docopt, memory, parallel, tasty, tasty-hunit, tasty-quickcheck + , template-haskell + }: + mkDerivation { + pname = "longshot"; + version = "0.1.0.5"; + sha256 = "1xgdkfykiwzscq91z7xg1dgsh9ma6bg03d82f58r297c7fzivvak"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base base16-bytestring blake2 blake3 bytestring containers + cryptohash-sha256 cryptonite deepseq docopt memory parallel + template-haskell + ]; + executableHaskellDepends = [ + base base16-bytestring blake2 blake3 bytestring containers + cryptohash-sha256 cryptonite deepseq docopt memory parallel + template-haskell + ]; + testHaskellDepends = [ + base base16-bytestring blake2 blake3 bytestring containers + cryptohash-sha256 cryptonite deepseq docopt memory parallel tasty + tasty-hunit tasty-quickcheck template-haskell + ]; + description = "Fast Brute-force search using parallelism"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "lookup-tables" = callPackage ({ mkDerivation, base, primitive, tasty, tasty-hunit , template-haskell @@ -164736,6 +165443,8 @@ self: { ]; description = "EDSL for the Michelson Language"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "loris" = callPackage @@ -164859,8 +165568,8 @@ self: { }: mkDerivation { pname = "lp-diagrams"; - version = "2.1.2"; - sha256 = "0q0qzij6j0nv01hhrd417swyyf5vhgi2m83bmk98dvrd0309l9xl"; + version = "2.1.4"; + sha256 = "035kaj2cawpkd5xry3wkl8slzga4qxklvjw91g9lh179zzpq6skj"; libraryHaskellDepends = [ base containers gasp graphviz labeled-tree lens mtl parsek polynomials-bernstein process reflection text typography-geometry @@ -164976,6 +165685,38 @@ self: { broken = true; }) {}; + "lsp" = callPackage + ({ mkDerivation, aeson, async, attoparsec, base, bytestring + , containers, data-default, dependent-map, directory, filepath + , hashable, hslogger, hspec, hspec-discover, lens, lsp-types, mtl + , network-uri, QuickCheck, quickcheck-instances, random + , rope-utf16-splay, scientific, sorted-list, stm, text, time + , transformers, unliftio-core, unordered-containers, uuid + }: + mkDerivation { + pname = "lsp"; + version = "1.0.0.0"; + sha256 = "05m9kxcf7g2xb4bhbn08bfbf09b8vvvw3nvpcfldpx180yz3n02r"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson async attoparsec base bytestring containers data-default + dependent-map directory filepath hashable hslogger lens lsp-types + mtl network-uri random scientific sorted-list stm text time + transformers unliftio-core unordered-containers uuid + ]; + testHaskellDepends = [ + aeson base bytestring containers data-default directory filepath + hashable hspec lens network-uri QuickCheck quickcheck-instances + rope-utf16-splay sorted-list stm text unordered-containers + ]; + testToolDepends = [ hspec-discover ]; + description = "Haskell library for the Microsoft Language Server Protocol"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "lsp-test" = callPackage ({ mkDerivation, aeson, aeson-pretty, ansi-terminal, async, base , bytestring, conduit, conduit-parse, containers, data-default @@ -165029,6 +165770,27 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "lsp-types" = callPackage + ({ mkDerivation, aeson, base, binary, bytestring, containers + , data-default, deepseq, dependent-sum-template, directory + , filepath, hashable, hslogger, lens, network-uri, rope-utf16-splay + , scientific, some, template-haskell, temporary, text + , unordered-containers + }: + mkDerivation { + pname = "lsp-types"; + version = "1.0.0.0"; + sha256 = "1cf07hdzgh5inskabdyli3zg95grc3qlw9d5xiqf1hwlspsyxis9"; + libraryHaskellDepends = [ + aeson base binary bytestring containers data-default deepseq + dependent-sum-template directory filepath hashable hslogger lens + network-uri rope-utf16-splay scientific some template-haskell + temporary text unordered-containers + ]; + description = "Haskell library for the Microsoft Language Server Protocol, data types"; + license = stdenv.lib.licenses.mit; + }) {}; + "lss" = callPackage ({ mkDerivation, attoparsec, base, containers, directory, filepath , hspec2, language-css, language-css-attoparsec, text, xmlhtml @@ -165288,8 +166050,8 @@ self: { ({ mkDerivation, base, lucid }: mkDerivation { pname = "lucid-cdn"; - version = "0.2.0.1"; - sha256 = "1y1rszg00kb1qpwrccpjv6l0qkn8cpxawks7ylcw8sbs0h824l73"; + version = "0.2.2.0"; + sha256 = "119d92xc047r98pw0phxplm57nc2jdjz6smkas9hr95mck0d16db"; libraryHaskellDepends = [ base lucid ]; description = "Curated list of CDN imports for lucid"; license = stdenv.lib.licenses.mit; @@ -168267,8 +169029,8 @@ self: { }: mkDerivation { pname = "matchable-th"; - version = "0.1.1.0"; - sha256 = "0hmdy38k1il2b0j6bkr3m4f1c8d8rvw21k3rlrd0q345xjx8y8p1"; + version = "0.1.1.1"; + sha256 = "0q6bvdfmdil68van4cmhy6kj2w0x1kf2kgs2f3wzz6m723ach30v"; libraryHaskellDepends = [ base matchable template-haskell th-abstraction ]; @@ -168799,21 +169561,20 @@ self: { , config-ini, connection, containers, data-clist, directory , filepath, gitrev, hashable, Hclip, mattermost-api , mattermost-api-qc, microlens-platform, mtl, network-uri, process - , quickcheck-text, random, semigroups, skylighting-core, split, stm - , stm-delay, strict, string-conversions, tasty, tasty-hunit - , tasty-quickcheck, temporary, text, text-zipper, time - , timezone-olson, timezone-series, transformers, Unique, unix - , unordered-containers, utf8-string, uuid, vector, vty, word-wrap - , xdg-basedir + , random, semigroups, skylighting-core, split, stm, stm-delay + , strict, tasty, tasty-hunit, tasty-quickcheck, temporary, text + , text-zipper, time, timezone-olson, timezone-series, transformers + , Unique, unix, unordered-containers, utf8-string, uuid, vector + , vty, word-wrap, xdg-basedir }: mkDerivation { pname = "matterhorn"; - version = "50200.10.2"; - sha256 = "1yla2wjhv093l3pngbk1ph0sl3ib7qmns2i0c1k8kgxrz4yj2gfb"; - isLibrary = false; + version = "50200.11.0"; + sha256 = "0wvw3wbv2sii1bjc8nmwyb1k0hzixfkfvpkmlkwa2my564vvmgz8"; + isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; - executableHaskellDepends = [ + libraryHaskellDepends = [ aeson aspell-pipe async base base-compat brick brick-skylighting bytestring cheapskate config-ini connection containers data-clist directory filepath gitrev hashable Hclip mattermost-api @@ -168823,14 +169584,11 @@ self: { unordered-containers utf8-string uuid vector vty word-wrap xdg-basedir ]; + executableHaskellDepends = [ base text ]; testHaskellDepends = [ - base base-compat brick bytestring cheapskate checkers config-ini - connection containers directory filepath hashable Hclip - mattermost-api mattermost-api-qc microlens-platform mtl process - quickcheck-text semigroups stm strict string-conversions tasty - tasty-hunit tasty-quickcheck text text-zipper time timezone-olson - timezone-series transformers Unique unordered-containers uuid - vector vty xdg-basedir + base bytestring cheapskate checkers containers mattermost-api + mattermost-api-qc tasty tasty-hunit tasty-quickcheck text time + Unique uuid ]; description = "Terminal client for the Mattermost chat system"; license = stdenv.lib.licenses.bsd3; @@ -168847,8 +169605,8 @@ self: { }: mkDerivation { pname = "mattermost-api"; - version = "50200.8.0"; - sha256 = "1x1wrf7yvwhwfn10207qv5ljpa1jwfm1ck67bwjzh3pcgq0d6x5w"; + version = "50200.9.0"; + sha256 = "08whhlkr3ayimn66lwinvv0ci8zbhk5i7sz1fk5r1dp7mg2jzgig"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -168872,8 +169630,8 @@ self: { }: mkDerivation { pname = "mattermost-api-qc"; - version = "50200.8.0"; - sha256 = "17d914dirzvpg3l4qly56y8y5yv18pc6qxngvi8sl410xnbx5p31"; + version = "50200.9.0"; + sha256 = "0rcbsf5hrp2fd9jqmcr07gg2y0xg4ksasrqfxrc7n4mgw0a409i6"; libraryHaskellDepends = [ base containers mattermost-api QuickCheck text time ]; @@ -169203,8 +169961,8 @@ self: { }: mkDerivation { pname = "mcmc"; - version = "0.2.3"; - sha256 = "14xf8l3ka7s34sa4rs4xsy7h5jxpl3fhsn959dvf17nsv252s6p8"; + version = "0.2.4"; + sha256 = "17ahxp7p1klg1j416gvs76a3x1hii5j0fv80rxfrw0w076gn3yy1"; libraryHaskellDepends = [ aeson base bytestring containers data-default directory double-conversion log-domain microlens mwc-random statistics time @@ -170863,8 +171621,8 @@ self: { }: mkDerivation { pname = "metro"; - version = "0.1.0.3"; - sha256 = "110zxqs79f8bcqx2w6c9h0snsqbzvkixpmzadmpdx13gqz32i73v"; + version = "0.1.0.4"; + sha256 = "1dnfc2nay0n51zkb9fx82yqdi5aj86lmix557w9dd5289v3r0ajb"; libraryHaskellDepends = [ base binary bytestring hashable hslogger mtl transformers unix-time unliftio unordered-containers @@ -171070,8 +171828,8 @@ self: { }: mkDerivation { pname = "micro-gateway"; - version = "1.1.0.0"; - sha256 = "1jb703vcqncxw12cmgmyg63rw6fmfa4mv1685z6vab3xzq7kvxv7"; + version = "1.1.0.1"; + sha256 = "0anph45wr8f9xkn67sssr2jm6dm2h58jzxzxxw2hfcpsqmpvm41z"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -171128,8 +171886,6 @@ self: { ]; description = "A tiny JSON library with light dependency footprint"; license = stdenv.lib.licenses.gpl3; - hydraPlatforms = stdenv.lib.platforms.none; - broken = true; }) {}; "microbase" = callPackage @@ -172225,6 +172981,44 @@ self: { license = stdenv.lib.licenses.asl20; }) {}; + "minio-hs_1_5_3" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, binary, bytestring + , case-insensitive, conduit, conduit-extra, connection, cryptonite + , cryptonite-conduit, digest, directory, exceptions, filepath + , http-client, http-client-tls, http-conduit, http-types, ini + , memory, protolude, QuickCheck, raw-strings-qq, resourcet, retry + , tasty, tasty-hunit, tasty-quickcheck, tasty-smallcheck, text + , time, transformers, unliftio, unliftio-core, unordered-containers + , xml-conduit + }: + mkDerivation { + pname = "minio-hs"; + version = "1.5.3"; + sha256 = "0nbrvkj8dn9m2i60iqk2wmf7fnj8bv4n65r4wxpimwb06yrvrfj2"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base base64-bytestring binary bytestring case-insensitive + conduit conduit-extra connection cryptonite cryptonite-conduit + digest directory exceptions filepath http-client http-client-tls + http-conduit http-types ini memory protolude raw-strings-qq + resourcet retry text time transformers unliftio unliftio-core + unordered-containers xml-conduit + ]; + testHaskellDepends = [ + aeson base base64-bytestring binary bytestring case-insensitive + conduit conduit-extra connection cryptonite cryptonite-conduit + digest directory exceptions filepath http-client http-client-tls + http-conduit http-types ini memory protolude QuickCheck + raw-strings-qq resourcet retry tasty tasty-hunit tasty-quickcheck + tasty-smallcheck text time transformers unliftio unliftio-core + unordered-containers xml-conduit + ]; + description = "A MinIO Haskell Library for Amazon S3 compatible cloud storage"; + license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "minions" = callPackage ({ mkDerivation, ansi-terminal, base, MissingH, process, time }: mkDerivation { @@ -172785,17 +173579,18 @@ self: { "miv" = callPackage ({ mkDerivation, aeson, async, base, concurrent-output, directory , filepath, ghc-prim, hashable, hspec, monad-parallel, process - , text, time, unix-compat, unordered-containers, xdg-basedir, yaml + , SafeSemaphore, text, time, unix-compat, unordered-containers + , xdg-basedir, yaml }: mkDerivation { pname = "miv"; - version = "0.4.2"; - sha256 = "0yhfinygsb2fnjspg87fx447kajrbldhddm24vxl41741xmwjl8a"; + version = "0.4.3"; + sha256 = "0i2ikjr36qdr2i92bapx2p4lq4jvfmzh12b2nslhqq4xnf2fs2ib"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ aeson async base concurrent-output directory filepath ghc-prim - hashable monad-parallel process text time unix-compat + hashable monad-parallel process SafeSemaphore text time unix-compat unordered-containers xdg-basedir yaml ]; testHaskellDepends = [ @@ -173086,8 +173881,8 @@ self: { ({ mkDerivation, base, vector }: mkDerivation { pname = "mmsyn2"; - version = "0.1.8.0"; - sha256 = "1qdbf89i5yx6ag9k4a9scc6wbm765b8zhq0gi12zx0bq75jjz3qz"; + version = "0.2.0.0"; + sha256 = "1lxfl6gr42x9rhy4jpig9hwl0bnbidrv65i8f4fr39ifrx43fgxw"; libraryHaskellDepends = [ base vector ]; description = "The library that can be used for multiple (Ord a) => a -> b transformations"; license = stdenv.lib.licenses.mit; @@ -173121,6 +173916,8 @@ self: { ]; description = "The \"glue\" between electronic tables and GraphViz"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "mmsyn5" = callPackage @@ -176049,6 +176846,8 @@ self: { ]; description = "Developer tools for the Michelson Language"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "morley-prelude" = callPackage @@ -177459,18 +178258,19 @@ self: { "mu-avro" = callPackage ({ mkDerivation, aeson, avro, base, bytestring, containers, deepseq , language-avro, mu-rpc, mu-schema, sop-core, tagged - , template-haskell, text, time, unordered-containers, uuid, vector + , template-haskell, text, time, transformers, unordered-containers + , uuid, vector }: mkDerivation { pname = "mu-avro"; - version = "0.3.0.0"; - sha256 = "0p5j3pzx2b8hj7zn7gdj7xg2n99yhzvbkhbr5cv6jwcd5gpz3pkn"; + version = "0.4.0.1"; + sha256 = "1nbslmb30yys61a5sn8nv7lczcagi4jidrfyw2wfqagkgj3afsyq"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson avro base bytestring containers deepseq language-avro mu-rpc - mu-schema sop-core tagged template-haskell text time + mu-schema sop-core tagged template-haskell text time transformers unordered-containers uuid vector ]; executableHaskellDepends = [ avro base bytestring mu-schema ]; @@ -177482,7 +178282,7 @@ self: { "mu-graphql" = callPackage ({ mkDerivation, aeson, async, attoparsec, base, bytestring - , conduit, graphql-parser, http-types, list-t, mtl, mu-rpc + , conduit, foldl, graphql-parser, http-types, list-t, mtl, mu-rpc , mu-schema, parsers, regex-tdfa, scientific, sop-core, stm , stm-chans, stm-conduit, stm-containers, template-haskell, text , unordered-containers, uuid, wai, wai-extra, wai-websockets, warp @@ -177490,13 +178290,13 @@ self: { }: mkDerivation { pname = "mu-graphql"; - version = "0.3.0.0"; - sha256 = "1371h6w3v10qcmp8zp3mjxfhvknk39qgcn9laslssci4yrrr5a09"; + version = "0.4.0.0"; + sha256 = "0vww6kv76sfi4931265gmbmyd67qlijxwiyl2z0lbcj1gs95j6x2"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ - aeson async attoparsec base bytestring conduit graphql-parser + aeson async attoparsec base bytestring conduit foldl graphql-parser http-types list-t mtl mu-rpc mu-schema parsers scientific sop-core stm stm-chans stm-conduit stm-containers template-haskell text unordered-containers uuid wai wai-websockets warp warp-tls @@ -177516,17 +178316,17 @@ self: { , http2-client, http2-client-grpc, http2-grpc-types, mu-grpc-common , mu-optics, mu-protobuf, mu-rpc, mu-schema, optics-core, sop-core , stm, stm-chans, stm-conduit, template-haskell, text - , th-abstraction + , th-abstraction, tracing }: mkDerivation { pname = "mu-grpc-client"; - version = "0.3.0.0"; - sha256 = "08z92rm1dcr02qwmd92inplzb1hgari0bsmw19xlmkdlsjldj5v0"; + version = "0.4.0.0"; + sha256 = "0j1dn2c95rzm8h6yzw5h5r3yhk5p1i51kx4px668hb3m9wss5qdr"; libraryHaskellDepends = [ async avro base bytestring conduit http2 http2-client http2-client-grpc http2-grpc-types mu-grpc-common mu-optics mu-protobuf mu-rpc mu-schema optics-core sop-core stm stm-chans - stm-conduit template-haskell text th-abstraction + stm-conduit template-haskell text th-abstraction tracing ]; description = "gRPC clients from Mu definitions"; license = stdenv.lib.licenses.asl20; @@ -177541,8 +178341,8 @@ self: { }: mkDerivation { pname = "mu-grpc-common"; - version = "0.3.0.0"; - sha256 = "1ipqzg799lfy2apl3galhgnqqpf5z9nr0dvb9gp9cmv0y9bn3iv6"; + version = "0.4.0.0"; + sha256 = "0rn0gkvxfd8j6ayzixapm3nagjszf50xjr8d59v7vfqh61kwrx83"; libraryHaskellDepends = [ avro base binary bytestring http2-grpc-proto3-wire http2-grpc-types mu-avro mu-protobuf mu-rpc mu-schema @@ -177561,8 +178361,8 @@ self: { }: mkDerivation { pname = "mu-grpc-server"; - version = "0.3.0.0"; - sha256 = "1z8mhychrr5y6zrxg3xx398x221cwyyw7yss8gfn0f5c7j64r693"; + version = "0.4.0.0"; + sha256 = "0wnqalcsj7j2ny999nw818ncy292f3kmmbwc2ci14d43zgrjdi3v"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -177599,6 +178399,21 @@ self: { broken = true; }) {}; + "mu-lens" = callPackage + ({ mkDerivation, base, containers, generic-lens, lens, mu-rpc + , mu-schema, sop-core, text + }: + mkDerivation { + pname = "mu-lens"; + version = "0.3.0.0"; + sha256 = "02awv7xm361wcag5ghv103fa6qid4kfqn5zjw14wcmqvanwy19f4"; + libraryHaskellDepends = [ + base containers generic-lens lens mu-rpc mu-schema sop-core text + ]; + description = "Lenses for @mu-schema@ terms"; + license = stdenv.lib.licenses.asl20; + }) {}; + "mu-optics" = callPackage ({ mkDerivation, base, containers, mu-schema, optics-core, sop-core }: @@ -177628,6 +178443,22 @@ self: { license = stdenv.lib.licenses.asl20; }) {}; + "mu-prometheus" = callPackage + ({ mkDerivation, base, lifted-base, monad-control, mu-rpc + , prometheus-client, text, wai, wai-middleware-prometheus + }: + mkDerivation { + pname = "mu-prometheus"; + version = "0.4.0.0"; + sha256 = "060fx3svjiwzyfifmwrzcvm23xp332yb91fb4hh7whcmi2q415c8"; + libraryHaskellDepends = [ + base lifted-base monad-control mu-rpc prometheus-client text wai + wai-middleware-prometheus + ]; + description = "Metrics support for Mu using Prometheus"; + license = stdenv.lib.licenses.asl20; + }) {}; + "mu-protobuf" = callPackage ({ mkDerivation, base, bytestring, compendium-client, http-client , http2-grpc-proto3-wire, language-protobuf, mu-rpc, mu-schema @@ -177636,8 +178467,8 @@ self: { }: mkDerivation { pname = "mu-protobuf"; - version = "0.3.0.0"; - sha256 = "02wk2bhx6lflgri9fm4dq09yz07xsm82fbxgm130zs7s6015chxf"; + version = "0.4.0.0"; + sha256 = "13323mk6maj4fn1vg98nkb80k1975mqaszbj67a4mr5n2s9vrlz2"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -177656,15 +178487,16 @@ self: { }) {}; "mu-rpc" = callPackage - ({ mkDerivation, base, conduit, mtl, mu-schema, sop-core - , template-haskell, text + ({ mkDerivation, aeson, base, conduit, http-types, mtl, mu-schema + , sop-core, template-haskell, text, wai }: mkDerivation { pname = "mu-rpc"; - version = "0.3.0.0"; - sha256 = "02m19ddp8q3khp8j6cgax24srf6dlpakq2wkjpqsa31vawn06a9g"; + version = "0.4.0.0"; + sha256 = "06aly31vqf4i96p62i7pjp9xr9rwvnrmg31qpvirjzgn6jq5dyk3"; libraryHaskellDepends = [ - base conduit mtl mu-schema sop-core template-haskell text + aeson base conduit http-types mtl mu-schema sop-core + template-haskell text wai ]; description = "Protocol-independent declaration of services and servers"; license = stdenv.lib.licenses.asl20; @@ -177673,20 +178505,58 @@ self: { "mu-schema" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, sop-core , template-haskell, text, th-abstraction, unordered-containers - , vector + , uuid, vector }: mkDerivation { pname = "mu-schema"; - version = "0.3.0.0"; - sha256 = "0b943w2mfrgrc2cgq4vjg1wgyb5ijdqfq9argv0k6i6b3hj97kqg"; + version = "0.3.1.0"; + sha256 = "1kl62ask8cvjimjcb9f3y3vpvk544m3zlzp4jn1yrvbmzn3px0d1"; libraryHaskellDepends = [ aeson base bytestring containers sop-core template-haskell text - th-abstraction unordered-containers vector + th-abstraction unordered-containers uuid vector ]; description = "Format-independent schemas for serialization"; license = stdenv.lib.licenses.asl20; }) {}; + "mu-servant-server" = callPackage + ({ mkDerivation, aeson, async, base, conduit, generic-aeson + , ghc-prim, mtl, mu-rpc, mu-schema, servant, servant-server + , servant-swagger, stm, swagger2, text, utf8-string, warp + }: + mkDerivation { + pname = "mu-servant-server"; + version = "0.4.0.0"; + sha256 = "0iwcrqbldfvjg9g7pq1r9gw8avhrl4m9fxjcr7gbci2fwalx7901"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson async base conduit generic-aeson ghc-prim mtl mu-rpc + mu-schema servant servant-server servant-swagger stm swagger2 + utf8-string + ]; + executableHaskellDepends = [ + aeson base conduit mu-rpc mu-schema servant-server text warp + ]; + description = "Servant servers for Mu definitions"; + license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + + "mu-tracing" = callPackage + ({ mkDerivation, base, containers, mu-rpc, text, tracing-control }: + mkDerivation { + pname = "mu-tracing"; + version = "0.4.0.0"; + sha256 = "0bc6xxhnaswq0pyq9qjhrig978gb25a0gxkhlah7iim5y09fxmaw"; + libraryHaskellDepends = [ + base containers mu-rpc text tracing-control + ]; + description = "Tracing support for Mu"; + license = stdenv.lib.licenses.asl20; + }) {}; + "mucipher" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -178145,8 +179015,8 @@ self: { ({ mkDerivation, base, bytestring, parsec, stringsearch }: mkDerivation { pname = "multipart"; - version = "0.2.0"; - sha256 = "1rw668hxj04zpkfwhjqbd0ph0wy9k2khsrbsni9sxi2px49vnmym"; + version = "0.2.1"; + sha256 = "0p6n4knxpjv70nbl6cmd6x7gkdjsjqp4ya7fz00bfrqp7jvhlivn"; libraryHaskellDepends = [ base bytestring parsec stringsearch ]; description = "Parsers for the HTTP multipart format"; license = stdenv.lib.licenses.bsd3; @@ -180145,6 +181015,8 @@ self: { sha256 = "0ixpm43sgir02a9y8i7rvalxh6h7vlcwgi2hmis0lq0w8pmw5m53"; libraryHaskellDepends = [ base named servant ]; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "named-servant-client" = callPackage @@ -180160,6 +181032,8 @@ self: { ]; description = "client support for named-servant"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "named-servant-server" = callPackage @@ -180175,6 +181049,8 @@ self: { ]; description = "server support for named-servant"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "named-sop" = callPackage @@ -183595,8 +184471,8 @@ self: { }: mkDerivation { pname = "ngx-export-tools"; - version = "0.4.8.0"; - sha256 = "1jw6ny4qnckxyvszislqy079bh6vnq9q0f4wig8n1diljs057waj"; + version = "0.4.9.0"; + sha256 = "0z1b3vzq11ifx3n8pmwary138ccqsfafzpl1nf27094rvr1ijjyn"; libraryHaskellDepends = [ aeson base binary bytestring ngx-export safe template-haskell ]; @@ -183613,8 +184489,8 @@ self: { }: mkDerivation { pname = "ngx-export-tools-extra"; - version = "0.5.5.1"; - sha256 = "0x3c1r0ddbk740182gwv43s2zxr6aj9k6y4npv7vi0fwyxjcqgkj"; + version = "0.5.6.0"; + sha256 = "08a13v1fx7lad7wdibij79vdcbqn10lcb2n6lhzq70097f8a06vm"; libraryHaskellDepends = [ aeson ansi-wl-pprint array base base64 binary bytestring case-insensitive containers ede enclosed-exceptions http-client @@ -184046,8 +184922,8 @@ self: { }: mkDerivation { pname = "nix-thunk"; - version = "0.1.0.0"; - sha256 = "0jg3j78dwq31g18fkmcbn4d8vlmdb0vpnicac2kmg0dwrw64v2gb"; + version = "0.2.0.0"; + sha256 = "1bkdcq4qvgnavpkvfvy6il691wwpw6lyba0hhxzjxbm132q46v2y"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -184059,7 +184935,7 @@ self: { executableHaskellDepends = [ base cli-extras optparse-applicative text ]; - description = "Virtual vendorization with Nix"; + description = "Lightweight dependency management with Nix"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; broken = true; @@ -185070,6 +185946,8 @@ self: { ]; description = "Examine values for unexpected thunks"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "notifications-tray-icon" = callPackage @@ -185116,6 +185994,8 @@ self: { libraryToolDepends = [ c2hs ]; description = "Haskell binding to Notmuch, the mail indexer"; license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {inherit (pkgs) notmuch; inherit (pkgs) talloc;}; "notmuch-haskell" = callPackage @@ -185343,8 +186223,8 @@ self: { }: mkDerivation { pname = "nri-prelude"; - version = "0.1.0.2"; - sha256 = "08m3a4gk66rfzwphpcfkd3z7qbfdkrks0f2wjwz0d3mwj638gnbv"; + version = "0.1.0.4"; + sha256 = "0x8jvrp2kcj9a23g370fj9v6mmp3c3vi05dg3arq1ri5in4y6psa"; libraryHaskellDepends = [ aeson ansi-terminal async auto-update base bytestring concurrent-output containers directory exceptions filepath hedgehog @@ -185902,6 +186782,24 @@ self: { broken = true; }) {}; + "numhask-free" = callPackage + ({ mkDerivation, attoparsec, base, containers, doctest, free + , numhask, text + }: + mkDerivation { + pname = "numhask-free"; + version = "0.0.1"; + sha256 = "1n786zg3sbc9zjr4972b837p459qx8yc1jqh0qlq1yw50yd9ic79"; + libraryHaskellDepends = [ + attoparsec base containers free numhask text + ]; + testHaskellDepends = [ base doctest numhask ]; + description = "See readme.md"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "numhask-hedgehog" = callPackage ({ mkDerivation, base, hedgehog, numhask, numhask-prelude , numhask-space @@ -185980,8 +186878,8 @@ self: { }: mkDerivation { pname = "numhask-space"; - version = "0.6.0"; - sha256 = "0zm64spljv7pvl68b60y7hr46fa82i44j7yk8q6i33nhr78qv7wy"; + version = "0.6.1"; + sha256 = "0kqq2p0j7p7my33lw0alcc6il3chvsaj75cm1py0wa681jfmzxcv"; libraryHaskellDepends = [ adjunctions base containers distributive numhask semigroupoids tdigest text time @@ -187727,6 +188625,8 @@ self: { ]; description = "Open algebraic data types"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "open-adt-tutorial" = callPackage @@ -187746,6 +188646,8 @@ self: { executableHaskellDepends = [ base ]; description = "Open algebraic data type examples"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "open-browser" = callPackage @@ -189011,6 +189913,26 @@ self: { broken = true; }) {}; + "oplang" = callPackage + ({ mkDerivation, base, directory, filepath, optparse-applicative + , parsec, process, text, text-builder, unordered-containers + }: + mkDerivation { + pname = "oplang"; + version = "0.1.0.0"; + sha256 = "09n4nq9wl4n3vfkh9av9i0z6gipsffsb5igs0rlcydii10hjcn89"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + base directory filepath optparse-applicative parsec process text + text-builder unordered-containers + ]; + description = "Compiler for OpLang, an esoteric programming language"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "opml" = callPackage ({ mkDerivation, base, directory, xml }: mkDerivation { @@ -189823,15 +190745,15 @@ self: { }) {}; "ordinal" = callPackage - ({ mkDerivation, base, containers, hspec, hspec-discover - , QuickCheck, regex, template-haskell, text, vector + ({ mkDerivation, base, containers, data-default, hspec + , hspec-discover, QuickCheck, regex, template-haskell, text, vector }: mkDerivation { pname = "ordinal"; - version = "0.2.0.0"; - sha256 = "01ja268zk5pwdjzl5msiycy41zkg66apchjg5g2x4642qmn0rsxd"; + version = "0.3.1.0"; + sha256 = "16y8a4xrrna6cwzy8lvvykdb9jgk5qswrwd8dn7iqgmhqck271x8"; libraryHaskellDepends = [ - base containers regex template-haskell text vector + base containers data-default regex template-haskell text vector ]; testHaskellDepends = [ base hspec QuickCheck text ]; testToolDepends = [ hspec-discover ]; @@ -190143,6 +191065,8 @@ self: { ]; description = "Multidimensional arrays inspired by APL"; license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "os-release" = callPackage @@ -191124,13 +192048,13 @@ self: { maintainers = with stdenv.lib.maintainers; [ peti ]; }) {}; - "pandoc_2_10_1" = callPackage + "pandoc_2_11_0_2" = callPackage ({ mkDerivation, aeson, aeson-pretty, attoparsec, base , base64-bytestring, binary, blaze-html, blaze-markup, bytestring - , case-insensitive, commonmark, commonmark-extensions + , case-insensitive, citeproc, commonmark, commonmark-extensions , commonmark-pandoc, connection, containers, criterion , data-default, deepseq, Diff, directory, doclayout, doctemplates - , emojis, exceptions, executable-path, filepath, Glob + , emojis, exceptions, executable-path, file-embed, filepath, Glob , haddock-library, hslua, hslua-module-system, hslua-module-text , HsYAML, HTTP, http-client, http-client-tls, http-types, ipynb , jira-wiki-markup, JuicyPixels, mtl, network, network-uri @@ -191143,24 +192067,24 @@ self: { }: mkDerivation { pname = "pandoc"; - version = "2.10.1"; - sha256 = "16i2sc5nf2gx5aykbd0jmbjcj2ivj5941bvkdj4dxlvy1adlr2lk"; + version = "2.11.0.2"; + sha256 = "0lnzypad3jfix7h78gk4fvyl0x3n7f77i8bn6dn2lzdsf6wasy8x"; configureFlags = [ "-fhttps" "-f-trypandoc" ]; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson aeson-pretty attoparsec base base64-bytestring binary - blaze-html blaze-markup bytestring case-insensitive commonmark - commonmark-extensions commonmark-pandoc connection containers - data-default deepseq directory doclayout doctemplates emojis - exceptions filepath Glob haddock-library hslua hslua-module-system - hslua-module-text HsYAML HTTP http-client http-client-tls - http-types ipynb jira-wiki-markup JuicyPixels mtl network - network-uri pandoc-types parsec process random safe scientific SHA - skylighting skylighting-core split syb tagsoup temporary texmath - text text-conversions time unicode-transforms unix - unordered-containers xml zip-archive zlib + blaze-html blaze-markup bytestring case-insensitive citeproc + commonmark commonmark-extensions commonmark-pandoc connection + containers data-default deepseq directory doclayout doctemplates + emojis exceptions file-embed filepath Glob haddock-library hslua + hslua-module-system hslua-module-text HsYAML HTTP http-client + http-client-tls http-types ipynb jira-wiki-markup JuicyPixels mtl + network network-uri pandoc-types parsec process random safe + scientific SHA skylighting skylighting-core split syb tagsoup + temporary texmath text text-conversions time unicode-transforms + unix unordered-containers xml zip-archive zlib ]; executableHaskellDepends = [ base ]; testHaskellDepends = [ @@ -191281,8 +192205,8 @@ self: { }: mkDerivation { pname = "pandoc-crossref"; - version = "0.3.8.1"; - sha256 = "15h484xq015jy65mzaqjqyi4ppnqfrdvvj1llmp8k00vb2xcrzrr"; + version = "0.3.8.3"; + sha256 = "0x6l3318g2x3q69drbnk2dkzn8l6c5m0msfnmwzbq6g6952gnsam"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -191586,23 +192510,24 @@ self: { broken = true; }) {}; - "pandoc-plot_0_9_4_0" = callPackage + "pandoc-plot_1_0_0_0" = callPackage ({ mkDerivation, base, bytestring, containers, criterion , data-default, directory, filepath, githash, hashable, hspec - , hspec-expectations, lifted-async, mtl, optparse-applicative - , pandoc, pandoc-types, shakespeare, tagsoup, tasty, tasty-hspec - , tasty-hunit, template-haskell, text, typed-process, yaml + , hspec-expectations, lifted-async, lifted-base, mtl + , optparse-applicative, pandoc, pandoc-types, shakespeare, tagsoup + , tasty, tasty-hspec, tasty-hunit, template-haskell, text + , typed-process, yaml }: mkDerivation { pname = "pandoc-plot"; - version = "0.9.4.0"; - sha256 = "0fa4aka5niydhm3jhiywjycj5hwhsy6nlg0nwy1n459pdr93ivyc"; + version = "1.0.0.0"; + sha256 = "1vls3xvj8zijl6sd698f8jljqslm4jnk07v8vzlm0s2gab2lcgmj"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base bytestring containers data-default directory filepath hashable - lifted-async mtl pandoc pandoc-types shakespeare tagsoup text - typed-process yaml + lifted-async lifted-base mtl pandoc pandoc-types shakespeare + tagsoup text typed-process yaml ]; executableHaskellDepends = [ base containers directory filepath githash optparse-applicative @@ -191826,8 +192751,8 @@ self: { ({ mkDerivation }: mkDerivation { pname = "pandora"; - version = "0.3.0"; - sha256 = "1k9b714rb9cgapn0vgwymrq7ma1lmq6klmlv37c6gqmb1c5k7ijh"; + version = "0.3.1"; + sha256 = "0b6xh5fzxw5v9hh1xjksh2bwzmlnv7wra5l1s9gzfwl623xgh445"; description = "A box of patterns and paradigms"; license = stdenv.lib.licenses.mit; }) {}; @@ -192809,8 +193734,8 @@ self: { pname = "paramtree"; version = "0.1.1.1"; sha256 = "0ls9wzmz5lk7gyl8lx9cjs49zpwhrv955fs5q6ypv7bpbvjbchs1"; - revision = "1"; - editedCabalFile = "0p7zb0xvx88i72garnlihp2q1x5lpsr73jp2qh8lgasy12gy7g0q"; + revision = "2"; + editedCabalFile = "17wyi6q6azm2s04pm1alc183yp01a8qbvj1nymjxdzvrl2dkk2g6"; libraryHaskellDepends = [ base containers ]; testHaskellDepends = [ base bytestring tasty tasty-golden tasty-hunit temporary @@ -193339,8 +194264,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "parsek"; - version = "1.0.2.0"; - sha256 = "05hi14wn6pzhknahyvjkw4cg9qfy20krig2pkx00r4s095zmpqza"; + version = "1.0.4.0"; + sha256 = "090yhbbh2i5lwfwrfml0n54ziy8mz3mgmwnykr4ab06w1ylc2zh4"; libraryHaskellDepends = [ base ]; description = "Parallel Parsing Processes"; license = stdenv.lib.licenses.gpl3; @@ -194096,8 +195021,8 @@ self: { ({ mkDerivation, base, dhall, either, path, text }: mkDerivation { pname = "path-dhall-instance"; - version = "0.2.0.0"; - sha256 = "084vwqp8qmz0llwdfhls4sg9qbyn17mhbsxskjq4cpjk08xp10d5"; + version = "0.2.1.0"; + sha256 = "17igz9936lfivph9rr04075sp7ik5k8byljw2vj0zx8lnznjwn6a"; libraryHaskellDepends = [ base dhall either path text ]; description = "ToDhall and FromDhall instances for Path"; license = stdenv.lib.licenses.mit; @@ -194137,10 +195062,8 @@ self: { }: mkDerivation { pname = "path-io"; - version = "1.6.0"; - sha256 = "0hcdxxwkhdhm59p6x74k1fsgsrqfa100c83cslm1h9ln0anj1r3k"; - revision = "3"; - editedCabalFile = "0rd7svl3jxzqnf8l2h4f7xwlv8av67y85bwmr40954disq714l74"; + version = "1.6.1"; + sha256 = "1qbnjwx72idbqwi5gkhnphf2phdszdf6y1aqf77y17kks3992vmn"; libraryHaskellDepends = [ base containers directory dlist exceptions filepath path temporary time transformers unix-compat @@ -194153,6 +195076,27 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "path-io_1_6_2" = callPackage + ({ mkDerivation, base, containers, directory, dlist, exceptions + , filepath, hspec, path, temporary, time, transformers, unix-compat + }: + mkDerivation { + pname = "path-io"; + version = "1.6.2"; + sha256 = "11mrs0awd343far3rmcphdli65g737haxg7fwx3pl04fgdxfbpdq"; + libraryHaskellDepends = [ + base containers directory dlist exceptions filepath path temporary + time transformers unix-compat + ]; + testHaskellDepends = [ + base directory exceptions filepath hspec path transformers + unix-compat + ]; + description = "Interface to ‘directory’ package for users of ‘path’"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "path-like" = callPackage ({ mkDerivation, base, path }: mkDerivation { @@ -195733,6 +196677,8 @@ self: { ]; description = "Periodic task system haskell client"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "periodic-client-exe" = callPackage @@ -195757,6 +196703,8 @@ self: { ]; description = "Periodic task system haskell client executables"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "periodic-common" = callPackage @@ -195813,6 +196761,8 @@ self: { ]; description = "Periodic task system haskell server"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "perm" = callPackage @@ -197373,8 +198323,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "phonetic-languages-rhythmicity"; - version = "0.1.0.1"; - sha256 = "1qrypqbc9fhnscgxiqr79l25pgphj6wnaw8g4vqpzn3cgw9v70s4"; + version = "0.1.2.0"; + sha256 = "1ljblyk0m1fs3n2gj72w6gs62dxjk5gsn8x6p7fwlwhvaa316wm3"; libraryHaskellDepends = [ base ]; description = "Allows to estimate the rhythmicity metrices for the text (usually, the Ukrainian poetic one)"; license = stdenv.lib.licenses.mit; @@ -201194,8 +202144,8 @@ self: { }: mkDerivation { pname = "polysemy-video"; - version = "0.1.0.1"; - sha256 = "0gpq4105lw24ddp7i4hqc9dnhn9pph4s3p37idfhrmkbyf52y8k8"; + version = "0.1.1.0"; + sha256 = "1f8fzhxjg3cpqb8sdrdl8mx9dwas5l32aw98s5m2p4xv1amnjl39"; libraryHaskellDepends = [ base formatting path path-utils polysemy text turtle ]; @@ -201318,6 +202268,8 @@ self: { pname = "polyvariadic"; version = "0.3.0.4"; sha256 = "17895458cfciv5lkcd26b5a96d9mwklish8xjhn14bd2himyczx0"; + revision = "1"; + editedCabalFile = "1z4wg7cb4akanch7cdmmvr8ibrv7il63gi2mchq8pasqad6150f0"; libraryHaskellDepends = [ base containers ]; testHaskellDepends = [ base ]; description = "Creation and application of polyvariadic functions"; @@ -202273,8 +203225,8 @@ self: { }: mkDerivation { pname = "postgres-websockets"; - version = "0.9.0.0"; - sha256 = "1c7has1vyp8i3my5126m8ciimcyyv4prav94wpl861gz7npdqxym"; + version = "0.10.0.0"; + sha256 = "1rhpv9dams24iy9wpj0v69blr2109xprz7yj1y0ng9cw3bnsrldm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -204349,8 +205301,8 @@ self: { }: mkDerivation { pname = "pretty-diff"; - version = "0.2.0.1"; - sha256 = "0g2n14jrmv994kd3wgyg2p52655s9fa5nibz64pdyj1dfkblg007"; + version = "0.2.0.2"; + sha256 = "0nz6shwyw6pkwd8n4rvix4fn0f5mvxx1xkc6q4k1xrg2ylg73ksv"; libraryHaskellDepends = [ base data-default Diff text ]; testHaskellDepends = [ base data-default Diff tasty tasty-hunit tasty-test-reporter text @@ -206295,14 +207247,14 @@ self: { , optparse-applicative, parallel, parser-combinators, path-pieces , QuickCheck, quickcheck-instances, random, random-shuffle , resourcet, rset, scotty, semigroups, stm, stm-containers - , template-haskell, temporary, text, time, transformers, unix - , unordered-containers, uuid, vector, vector-binary-instances - , websockets, zlib + , template-haskell, temporary, text, text-manipulate, time + , transformers, unix, unordered-containers, uuid, vector + , vector-binary-instances, websockets, zlib }: mkDerivation { pname = "project-m36"; - version = "0.8"; - sha256 = "0rc5vixyaakh9avsn4xwf1phqm1298z8d81xwxllas0wq5cbyvl3"; + version = "0.8.1"; + sha256 = "10by97f23pbl7hdwgc0609qxfyl7fak28n0nvvzb51q282w7f22h"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -206316,8 +207268,8 @@ self: { MonadRandom mtl network-transport network-transport-tcp old-locale optparse-applicative parallel path-pieces QuickCheck quickcheck-instances random-shuffle resourcet rset semigroups stm - stm-containers temporary text time transformers unix - unordered-containers uuid vector vector-binary-instances zlib + stm-containers temporary text text-manipulate time transformers + unix unordered-containers uuid vector vector-binary-instances zlib ]; executableHaskellDepends = [ aeson attoparsec base base64-bytestring binary blaze-html @@ -206421,6 +207373,24 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "prolens" = callPackage + ({ mkDerivation, base, doctest, hedgehog, hspec, hspec-hedgehog + , inspection-testing + }: + mkDerivation { + pname = "prolens"; + version = "0.0.0.0"; + sha256 = "1p4cl83knkvfa11ijw9qb2akz9n8lv9ixawgxwynypygg7vdg9j2"; + libraryHaskellDepends = [ base ]; + testHaskellDepends = [ + base doctest hedgehog hspec hspec-hedgehog inspection-testing + ]; + description = "Profunctor-based lightweight implementation of optics"; + license = stdenv.lib.licenses.mpl20; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "prolog" = callPackage ({ mkDerivation, base, containers, mtl, parsec, syb , template-haskell, th-lift, transformers @@ -206499,16 +207469,16 @@ self: { }) {}; "prolude" = callPackage - ({ mkDerivation, aeson, base, bytestring, mongoDB, safe-exceptions - , scientific, text, time, vector + ({ mkDerivation, aeson, base, bytestring, containers, mongoDB + , safe-exceptions, scientific, text, time, vector }: mkDerivation { pname = "prolude"; - version = "0.0.0.1"; - sha256 = "1qk9i362z5mw5agxqvlpz2yvl5cq485nbfkl1kxanp36bkxigz6c"; + version = "0.0.0.4"; + sha256 = "147kn423jxc4rcb4vbsj7av8pxdz8lgcgblbmrvq821h26vgc1ai"; libraryHaskellDepends = [ - aeson base bytestring mongoDB safe-exceptions scientific text time - vector + aeson base bytestring containers mongoDB safe-exceptions scientific + text time vector ]; description = "ITProTV's custom prelude"; license = stdenv.lib.licenses.mit; @@ -207794,6 +208764,23 @@ self: { broken = true; }) {}; + "ptr-poker" = callPackage + ({ mkDerivation, base, bytestring, gauge, hedgehog, numeric-limits + , rerebase, scientific, text + }: + mkDerivation { + pname = "ptr-poker"; + version = "0.1.1.2"; + sha256 = "06h267z01cvk2sck7ycbi8vssg4985nh7cxx2mw92hiqj1kqp0gp"; + libraryHaskellDepends = [ base bytestring scientific text ]; + testHaskellDepends = [ hedgehog numeric-limits rerebase ]; + benchmarkHaskellDepends = [ gauge rerebase ]; + description = "Pointer poking action construction and composition toolkit"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "pub" = callPackage ({ mkDerivation, base, bytestring, hedis, optparse-generic, pipes , pipes-bytestring, text @@ -208723,15 +209710,15 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "pusher-http-haskell_2_0_0_1" = callPackage + "pusher-http-haskell_2_0_0_2" = callPackage ({ mkDerivation, aeson, base, base16-bytestring, bytestring , cryptonite, hashable, hspec, http-client, http-client-tls , http-types, memory, QuickCheck, text, time, unordered-containers }: mkDerivation { pname = "pusher-http-haskell"; - version = "2.0.0.1"; - sha256 = "05f4p4rnx2gy1f17d83sfpnxrfniq710pyai97gwi4ks3f4avk5a"; + version = "2.0.0.2"; + sha256 = "0ci2wg0y3762n1in8jyw1dpjljdynhl4bfp9506kfkc6ym9j2q1a"; libraryHaskellDepends = [ aeson base base16-bytestring bytestring cryptonite hashable http-client http-client-tls http-types memory text time @@ -208900,6 +209887,25 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "pvar_1_0_0_0" = callPackage + ({ mkDerivation, async, base, deepseq, genvalidity, hspec + , primitive, QuickCheck + }: + mkDerivation { + pname = "pvar"; + version = "1.0.0.0"; + sha256 = "0f28wb89zlddgmh0302x73lphmd6kmx1829yh6kwsz7a6asq79ln"; + revision = "1"; + editedCabalFile = "0r3r7w9x31pimrzmp5fjabgcx8caxf1g0mk9izksw2wnn1anhjix"; + libraryHaskellDepends = [ base deepseq primitive ]; + testHaskellDepends = [ + async base deepseq genvalidity hspec primitive QuickCheck + ]; + description = "Mutable variable with primitive values"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "pvd" = callPackage ({ mkDerivation, array, base, Codec-Image-DevIL, containers , haskell98, libdevil, mtl, network, stm, X11 @@ -209189,6 +210195,8 @@ self: { ]; description = "Command line tool qhs, SQL queries on CSV and TSV files"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "qhull-simple" = callPackage @@ -210435,8 +211443,8 @@ self: { }: mkDerivation { pname = "quickjs-hs"; - version = "0.1.2.2"; - sha256 = "1zis42hsvljrqli9469n9k0h44i79a9v9qcd10agq1gylkhgsmkr"; + version = "0.1.2.3"; + sha256 = "1azd2173hwij0z2qxn4k6fi7bkiyaar0q751z15byhbdzil7pf1d"; libraryHaskellDepends = [ aeson base bytestring containers exceptions inline-c mtl scientific string-conv text time transformers unliftio-core @@ -211198,6 +212206,22 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "radius_0_7_1_0" = callPackage + ({ mkDerivation, base, binary, bytestring, cryptonite, iproute + , lens, memory + }: + mkDerivation { + pname = "radius"; + version = "0.7.1.0"; + sha256 = "1q7dz40n97z5kajn60fszdhq7yb5m33dbd34j94218iqshz844ql"; + libraryHaskellDepends = [ + base binary bytestring cryptonite iproute lens memory + ]; + description = "Remote Authentication Dial In User Service (RADIUS)"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "radix" = callPackage ({ mkDerivation, base, filepath }: mkDerivation { @@ -213783,9 +214807,11 @@ self: { ]; description = "Animation library based on SVGs"; license = stdenv.lib.licenses.publicDomain; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; - "reanimate_1_1_0_0" = callPackage + "reanimate_1_1_1_0" = callPackage ({ mkDerivation, aeson, ansi-terminal, array, attoparsec, base , base64-bytestring, bytestring, cassava, cereal, colour , containers, cryptohash-sha256, cubicbezier, directory, filelock @@ -213800,8 +214826,8 @@ self: { }: mkDerivation { pname = "reanimate"; - version = "1.1.0.0"; - sha256 = "0cqmmdqpfzhqwvjwga2rj94drhrc5g95ji5iia92zzqicr51rfmf"; + version = "1.1.1.0"; + sha256 = "05illhid0nnypkl7znzkmc7b3wc7lmv8jn2sdcj39xr1yr8hji7f"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson ansi-terminal array attoparsec base base64-bytestring @@ -213821,6 +214847,7 @@ self: { description = "Animation library based on SVGs"; license = stdenv.lib.licenses.publicDomain; hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "reanimate-svg" = callPackage @@ -213843,18 +214870,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "reanimate-svg_0_12_2_1" = callPackage + "reanimate-svg_0_13_0_0" = callPackage ({ mkDerivation, attoparsec, base, bytestring, containers, Diff , directory, double-conversion, filepath, hashable, JuicyPixels , lens, linear, mtl, process, QuickCheck, scientific, tasty , tasty-expected-failure, tasty-golden, tasty-hunit , tasty-quickcheck, tasty-rerun, temporary, text, transformers - , vector, xml + , typed-process, vector, xml }: mkDerivation { pname = "reanimate-svg"; - version = "0.12.2.1"; - sha256 = "1rg9zz3qnbjxv1w03jzqs7a2qjkrjm5iz6x4j2j7kh2w8x5x1h24"; + version = "0.13.0.0"; + sha256 = "0fl3rb993zihwm9vyg615x4k17rrqimjfpc7k06mb5dlgkd39f7v"; libraryHaskellDepends = [ attoparsec base bytestring containers double-conversion hashable JuicyPixels lens linear mtl scientific text transformers vector xml @@ -213862,7 +214889,7 @@ self: { testHaskellDepends = [ base bytestring Diff directory filepath linear process QuickCheck tasty tasty-expected-failure tasty-golden tasty-hunit - tasty-quickcheck tasty-rerun temporary text vector + tasty-quickcheck tasty-rerun temporary text typed-process vector ]; description = "SVG file loader and serializer"; license = stdenv.lib.licenses.bsd3; @@ -214676,6 +215703,8 @@ self: { ]; description = "Extra stuff for mutable references"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "ref-fd" = callPackage @@ -214847,6 +215876,23 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "refinery_0_3_0_0" = callPackage + ({ mkDerivation, base, checkers, exceptions, hspec, logict, mmorph + , mtl, QuickCheck + }: + mkDerivation { + pname = "refinery"; + version = "0.3.0.0"; + sha256 = "1bsbnxf75prw153c3k02jk84h3sravdi1c1sl75c7sx4xq81qhlp"; + libraryHaskellDepends = [ base exceptions logict mmorph mtl ]; + testHaskellDepends = [ + base checkers exceptions hspec logict mmorph mtl QuickCheck + ]; + description = "Toolkit for building proof automation systems"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "reflection" = callPackage ({ mkDerivation, base, containers, hspec, hspec-discover , QuickCheck, template-haskell @@ -216000,8 +217046,8 @@ self: { }: mkDerivation { pname = "regex-pcre-builtin"; - version = "0.95.1.2.8.43"; - sha256 = "1bxn8d3g9w1a5q5vcz744yx019d2rd79i07qcjq4jqkjafni1bml"; + version = "0.95.1.3.8.43"; + sha256 = "0n1sbsjch0n5cgv2lhw2yfaxb611mckyg0jpz2kcbyj5hcrvzv3c"; libraryHaskellDepends = [ array base bytestring containers regex-base text ]; @@ -217962,7 +219008,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "req_3_6_0" = callPackage + "req_3_7_0" = callPackage ({ mkDerivation, aeson, authenticate-oauth, base, blaze-builder , bytestring, case-insensitive, connection, exceptions, hspec , hspec-core, hspec-discover, http-api-data, http-client @@ -217972,10 +219018,8 @@ self: { }: mkDerivation { pname = "req"; - version = "3.6.0"; - sha256 = "1ks9iqnnsa8m65ndyblyndb95fc4r4xachq1zrik04adxrdj3b50"; - revision = "1"; - editedCabalFile = "1vr4926n5ac8h4i71q0hqwgf78l7f572wal22ndys3dscvg4a7f1"; + version = "3.7.0"; + sha256 = "1ajak1845dx5vzc7mb5wyh6rilggnm0y5bh93f955zby1mr3mhi1"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson authenticate-oauth base blaze-builder bytestring @@ -218216,24 +219260,27 @@ self: { , doctest, exceptions, ghc, Glob, hlint, hspec, hspec-core , hspec-expectations, lens-aeson, mtl, QuickCheck , quickcheck-instances, rio, tasty, tasty-hspec, tasty-hunit - , tasty-rerun, tasty-smallcheck, text, transformers, world-peace - , yaml + , tasty-rerun, tasty-smallcheck, text, transformers + , transformers-base, world-peace, yaml }: mkDerivation { pname = "rescue"; - version = "0.2.1"; - sha256 = "1rb7apdlpm69695hcpimmyjn5ar8lld8q1hgag86jsww5dfn2mp7"; + version = "0.3.0"; + sha256 = "0lfvd5x845m2by8n67lgcybp22ppf7yxgglcqzwwfmmpa9qnchq2"; libraryHaskellDepends = [ - base exceptions ghc mtl text transformers world-peace + base exceptions ghc mtl text transformers transformers-base + world-peace ]; testHaskellDepends = [ base directory directory-tree doctest exceptions ghc Glob hlint hspec hspec-core hspec-expectations lens-aeson mtl QuickCheck quickcheck-instances rio tasty tasty-hspec tasty-hunit tasty-rerun - tasty-smallcheck text transformers world-peace yaml + tasty-smallcheck text transformers transformers-base world-peace + yaml ]; benchmarkHaskellDepends = [ - base criterion exceptions ghc mtl text transformers world-peace + base criterion exceptions ghc mtl text transformers + transformers-base world-peace ]; description = "More understandable exceptions"; license = stdenv.lib.licenses.asl20; @@ -220420,6 +221467,8 @@ self: { ]; description = "Automatic session-aware servant testing"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "robot" = callPackage @@ -220558,6 +221607,8 @@ self: { ]; description = "Haskell bindings to RocksDB"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {inherit (pkgs) rocksdb;}; "rocksdb-haskell-jprupp" = callPackage @@ -224793,6 +225844,8 @@ self: { ]; description = "Html form validation using `ditto`"; license = stdenv.lib.licenses.gpl2; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "scotty-format" = callPackage @@ -225793,24 +226846,25 @@ self: { license = stdenv.lib.licenses.mit; }) {inherit (pkgs) secp256k1;}; - "secp256k1-haskell_0_4_0" = callPackage + "secp256k1-haskell_0_5_0" = callPackage ({ mkDerivation, base, base16-bytestring, bytestring, cereal , deepseq, entropy, hashable, hspec, hspec-discover, HUnit , monad-par, mtl, QuickCheck, secp256k1, string-conversions - , unliftio + , unliftio-core }: mkDerivation { pname = "secp256k1-haskell"; - version = "0.4.0"; - sha256 = "07hgfrr98g42sia5bssch7lrajx7y6fz98f13ly5rjkm5brw0zba"; + version = "0.5.0"; + sha256 = "18mp6ljqwrymvk5gl7v09xq0r7c2fhkvjfs8gdlzwgql35di5g7d"; libraryHaskellDepends = [ base base16-bytestring bytestring cereal deepseq entropy hashable - QuickCheck string-conversions unliftio + QuickCheck string-conversions unliftio-core ]; libraryPkgconfigDepends = [ secp256k1 ]; testHaskellDepends = [ base base16-bytestring bytestring cereal deepseq entropy hashable - hspec HUnit monad-par mtl QuickCheck string-conversions unliftio + hspec HUnit monad-par mtl QuickCheck string-conversions + unliftio-core ]; testToolDepends = [ hspec-discover ]; description = "Bindings for secp256k1"; @@ -226062,12 +227116,12 @@ self: { }) {}; "selections" = callPackage - ({ mkDerivation, base, bifunctors, comonad, profunctors }: + ({ mkDerivation, base }: mkDerivation { pname = "selections"; - version = "0.2.0.0"; - sha256 = "000hdwdp56pc67j1iw0mc6m74dfim67g16ib4yr7vyilq8rfccb0"; - libraryHaskellDepends = [ base bifunctors comonad profunctors ]; + version = "0.3.0.0"; + sha256 = "0vl7rqrz0p5m7iwymaw3b8l2kbaikwhmkhq82hq79581vj99fdpw"; + libraryHaskellDepends = [ base ]; description = "Combinators for operating with selections over an underlying functor"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -227511,6 +228565,8 @@ self: { testToolDepends = [ hspec-discover ]; description = "servant-docs/servant-auth compatibility"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "servant-auth-hmac" = callPackage @@ -228046,6 +229102,8 @@ self: { ]; description = "A servant client for frontend JavaScript"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "servant-client-namedargs" = callPackage @@ -228254,6 +229312,29 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "servant-docs-simple_0_3_0_0" = callPackage + ({ mkDerivation, aeson, aeson-pretty, base, bytestring, hspec + , hspec-core, ordered-containers, prettyprinter, raw-strings-qq + , servant, text, unordered-containers + }: + mkDerivation { + pname = "servant-docs-simple"; + version = "0.3.0.0"; + sha256 = "0nzlgb3ccycqm3v599hh7k7fk7f8wqj0r2c2ldy9fj1c55h9n8hb"; + libraryHaskellDepends = [ + aeson aeson-pretty base bytestring ordered-containers prettyprinter + servant text unordered-containers + ]; + testHaskellDepends = [ + aeson aeson-pretty base bytestring hspec hspec-core + ordered-containers prettyprinter raw-strings-qq servant text + unordered-containers + ]; + description = "Generate endpoints overview for Servant API"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "servant-ede" = callPackage ({ mkDerivation, aeson, base, bytestring, ede, either, filepath , http-media, http-types, semigroups, servant, servant-server, text @@ -229051,6 +230132,8 @@ self: { testToolDepends = [ hspec-discover ]; description = "Generate a Swagger/OpenAPI/OAS 3.0 specification for your servant API."; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "servant-options" = callPackage @@ -231504,6 +232587,8 @@ self: { ]; description = "Dependency tracking for Futhark"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "shake-google-closure-compiler" = callPackage @@ -233097,6 +234182,8 @@ self: { ]; description = "Deterministic serialisation and signatures with proto-lens support"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "signable-haskell-protoc" = callPackage @@ -233196,11 +234283,13 @@ self: { ({ mkDerivation, base, prettyprinter }: mkDerivation { pname = "silkscreen"; - version = "0.0.0.2"; - sha256 = "0839minsb7n7170xw3qh62sszggh4ap95v06s3d4l7a76s42bmic"; + version = "0.0.0.3"; + sha256 = "0gmp71cipwc0ymydckhvw9g8q3j4pm8cq2la2rbvm0rr9z7c2l40"; libraryHaskellDepends = [ base prettyprinter ]; description = "Prettyprinting transformers"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "silvi" = callPackage @@ -233374,19 +234463,6 @@ self: { }) {}; "simple-cabal" = callPackage - ({ mkDerivation, base, bytestring, Cabal, directory, filepath }: - mkDerivation { - pname = "simple-cabal"; - version = "0.1.2"; - sha256 = "1a834zrj58m7nqvwiwfvqi696dib7h69qlb96vh93zqjn9ndv6hz"; - libraryHaskellDepends = [ - base bytestring Cabal directory filepath - ]; - description = "Cabal file wrapper library"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "simple-cabal_0_1_3" = callPackage ({ mkDerivation, base, bytestring, Cabal, directory, filepath }: mkDerivation { pname = "simple-cabal"; @@ -233397,7 +234473,6 @@ self: { ]; description = "Cabal file wrapper library"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "simple-cmd" = callPackage @@ -235192,14 +236267,14 @@ self: { license = stdenv.lib.licenses.gpl2; }) {}; - "skylighting_0_10_0_2" = callPackage + "skylighting_0_10_0_3" = callPackage ({ mkDerivation, base, binary, blaze-html, bytestring, containers , directory, filepath, pretty-show, skylighting-core, text }: mkDerivation { pname = "skylighting"; - version = "0.10.0.2"; - sha256 = "0m2z4hmv2m6h6kmvn8n3fskwyhq6pj28bjfvs61qg9pnga3xbf26"; + version = "0.10.0.3"; + sha256 = "1fzcvhkzrzf0rlic61fjbz7n9vfxjyc45kn57pw48qdl77shqhga"; configureFlags = [ "-fexecutable" ]; isLibrary = true; isExecutable = true; @@ -235247,7 +236322,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "skylighting-core_0_10_0_2" = callPackage + "skylighting-core_0_10_0_3" = callPackage ({ mkDerivation, aeson, ansi-terminal, attoparsec, base , base64-bytestring, binary, blaze-html, bytestring , case-insensitive, colour, containers, criterion, Diff, directory @@ -235257,8 +236332,8 @@ self: { }: mkDerivation { pname = "skylighting-core"; - version = "0.10.0.2"; - sha256 = "07gdvmz8lvqkzzgnxakx015g2ijmqd2jmni1phz6x79xf9q7s5vw"; + version = "0.10.0.3"; + sha256 = "1c2r0gsy4c5l6m3w0i3zzv1fvaaqzn2636sd0mmzd9a8ncsgyzf6"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -235799,8 +236874,8 @@ self: { }: mkDerivation { pname = "slynx"; - version = "0.4.0"; - sha256 = "10a6nqpr422c80vmzjx1r2wgbhkc2kjn7kvmavc0cx1752wn79kc"; + version = "0.4.1"; + sha256 = "1cmbk2ynyd5il0jlci5jbc2mn4vhwgrbr7041vgivnqg3p5mb1lx"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -240162,17 +241237,17 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "splitmix_0_1_0_1" = callPackage + "splitmix_0_1_0_3" = callPackage ({ mkDerivation, async, base, base-compat, base-compat-batteries , bytestring, clock, containers, criterion, deepseq, HUnit , math-functions, process, random, test-framework - , test-framework-hunit, tf-random, time, vector + , test-framework-hunit, tf-random, vector }: mkDerivation { pname = "splitmix"; - version = "0.1.0.1"; - sha256 = "0ahr3zxx0n9pjxpldrphqx5rhanar6alq3km7qvszipa8r46jjsd"; - libraryHaskellDepends = [ base deepseq time ]; + version = "0.1.0.3"; + sha256 = "0das5n44dhlcv5i233iakx37d17kidqvhrvp6w9nd7hc015ry026"; + libraryHaskellDepends = [ base deepseq ]; testHaskellDepends = [ async base base-compat base-compat-batteries bytestring containers deepseq HUnit math-functions process random test-framework @@ -241321,8 +242396,10 @@ self: { }: mkDerivation { pname = "stack"; - version = "2.3.3"; - sha256 = "1j2z8cgb9c56g39dh5ff2sri3r3vxddy6ymznkywn6d7c1z4j7qs"; + version = "2.5.1"; + sha256 = "1ffbgs5wgdcvvwbg3pkpgih5dqcbw8mpjj2p49fd8f79cfxmjq20"; + revision = "1"; + editedCabalFile = "0k5hapiyq2qv8sn2l2j5sh6w9b8493apwwsbrhpym5m1llxrv29p"; configureFlags = [ "-fdisable-git-info" "-fhide-dependency-versions" "-fsupported-build" @@ -242254,8 +243331,6 @@ self: { doHaddock = false; description = "Haskell STatic ANalyser"; license = stdenv.lib.licenses.mpl20; - hydraPlatforms = stdenv.lib.platforms.none; - broken = true; }) {}; "standalone-derive-topdown" = callPackage @@ -243331,6 +244406,8 @@ self: { testHaskellDepends = [ base hspec mtl stm stm-queue ]; description = "A simplistic actor model based on STM"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "stm-channelize" = callPackage @@ -243404,8 +244481,8 @@ self: { }: mkDerivation { pname = "stm-containers"; - version = "1.1.0.4"; - sha256 = "0mcn4v9gjkqp27xcwvqphiqnaj4grvxpsflhq0rwqp5ymnzlccyl"; + version = "1.2"; + sha256 = "0yhpnxj7v880fy7vgjz5idpqfg2sm4dflp13k7fs0bqqlfv9hkbc"; libraryHaskellDepends = [ base deferred-folds focus hashable list-t stm-hamt transformers ]; @@ -243415,6 +244492,8 @@ self: { ]; description = "Containers for STM"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "stm-delay" = callPackage @@ -243486,6 +244565,18 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "stm-incremental" = callPackage + ({ mkDerivation, base, hspec, stm }: + mkDerivation { + pname = "stm-incremental"; + version = "0.1.0.2"; + sha256 = "0fynnynx395r9mgm40w2nsb661vy9yaj7wxwfz206yrbpwrvd9vz"; + libraryHaskellDepends = [ base stm ]; + testHaskellDepends = [ base hspec stm ]; + description = "A library for constructing incremental computations"; + license = stdenv.lib.licenses.mit; + }) {}; + "stm-io-hooks" = callPackage ({ mkDerivation, array, base, mtl, stm }: mkDerivation { @@ -243549,8 +244640,8 @@ self: { }: mkDerivation { pname = "stm-queue"; - version = "0.1.2.0"; - sha256 = "06l5gavmf4x6vp54p1h27nnm5nnw6f8p82v5np93b25inc67vz4h"; + version = "0.1.2.1"; + sha256 = "0by8jga1wrzzasa442fi61nl5kv88vbl2030gidmgzrzbgf0q8yc"; libraryHaskellDepends = [ base stm ]; testHaskellDepends = [ async base hspec stm ]; benchmarkHaskellDepends = [ @@ -244401,22 +245492,22 @@ self: { "streaming-bytestring" = callPackage ({ mkDerivation, base, bytestring, deepseq, exceptions, mmorph, mtl - , resourcet, smallcheck, streaming, tasty, tasty-smallcheck - , transformers, transformers-base + , resourcet, smallcheck, streaming, tasty, tasty-hunit + , tasty-smallcheck, transformers, transformers-base }: mkDerivation { pname = "streaming-bytestring"; - version = "0.1.6"; - sha256 = "1lsklavhk6wcsgjr2rcwkkv827gnd9spv4zwz5i5zf3njvy27my1"; + version = "0.1.7"; + sha256 = "12fd0aqd6vxm8c6ccgqd99m1hh3z3nb155hairnddzix0v3r8zvd"; libraryHaskellDepends = [ base bytestring deepseq exceptions mmorph mtl resourcet streaming transformers transformers-base ]; testHaskellDepends = [ - base bytestring smallcheck streaming tasty tasty-smallcheck - transformers + base bytestring resourcet smallcheck streaming tasty tasty-hunit + tasty-smallcheck transformers ]; - description = "effectful byte steams, or: bytestring io done right"; + description = "Fast, effectful byte streams"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -246469,6 +247560,17 @@ self: { broken = true; }) {}; + "subG" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "subG"; + version = "0.1.1.1"; + sha256 = "0726w12aqjmbdvqp8lpv68dh4h98bzv13ng41831ljdr76c3lrsy"; + libraryHaskellDepends = [ base ]; + description = "Some extension to the Foldable and Monoid classes"; + license = stdenv.lib.licenses.mit; + }) {}; + "subcategories" = callPackage ({ mkDerivation, base, bytestring, containers, data-default, foldl , hashable, inspection-testing, mono-traversable, pointed @@ -247769,8 +248871,8 @@ self: { }: mkDerivation { pname = "sweet-egison"; - version = "0.1.1.0"; - sha256 = "1zd1l2gbg7dp53d4jzki6k8jqxdvqgy5gl6jdy325hx1fycrixql"; + version = "0.1.1.3"; + sha256 = "0b2rvfgj7l10plgri5ia3l07ip71c9c3259k78z140i57pfjlfh7"; libraryHaskellDepends = [ backtracking base egison-pattern-src egison-pattern-src-th-mode haskell-src-exts haskell-src-meta logict template-haskell @@ -250794,8 +251896,8 @@ self: { }: mkDerivation { pname = "tasty-ant-xml"; - version = "1.1.6"; - sha256 = "13qqpl1prr9dda87dp45mqybay24n8rhxxgvpc9j34kh72g8j5qw"; + version = "1.1.7"; + sha256 = "01br1jqmin3kislw59rdsgl4pggdf8miwddifj654dllfgg148vg"; libraryHaskellDepends = [ base containers directory filepath generic-deriving ghc-prim mtl stm tagged tasty transformers xml @@ -250865,32 +251967,6 @@ self: { }) {}; "tasty-discover" = callPackage - ({ mkDerivation, base, containers, directory, filepath, Glob - , hedgehog, tasty, tasty-hedgehog, tasty-hspec, tasty-hunit - , tasty-quickcheck, tasty-smallcheck - }: - mkDerivation { - pname = "tasty-discover"; - version = "4.2.1"; - sha256 = "0ghxrjkqp4w6i47pvdsd25zs6sj10rw4ybkf0pxr598l8qw5nv5y"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base containers directory filepath Glob - ]; - executableHaskellDepends = [ - base containers directory filepath Glob - ]; - testHaskellDepends = [ - base containers directory filepath Glob hedgehog tasty - tasty-hedgehog tasty-hspec tasty-hunit tasty-quickcheck - tasty-smallcheck - ]; - description = "Test discovery for the tasty framework"; - license = stdenv.lib.licenses.mit; - }) {}; - - "tasty-discover_4_2_2" = callPackage ({ mkDerivation, base, containers, directory, filepath, Glob , hedgehog, tasty, tasty-hedgehog, tasty-hspec, tasty-hunit , tasty-quickcheck, tasty-smallcheck @@ -250914,7 +251990,6 @@ self: { ]; description = "Test discovery for the tasty framework"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "tasty-expected-failure" = callPackage @@ -251281,8 +252356,8 @@ self: { }: mkDerivation { pname = "tasty-lua"; - version = "0.2.3"; - sha256 = "0kpmp51wyqbjv3nsrnybpms7flsl2bznqp8gf27zv2f5kraa77vk"; + version = "0.2.3.1"; + sha256 = "1dw9wbwhyklc2lkpvhj12kdq7kyq6lv9w2586szx3yr5qbpwaggm"; libraryHaskellDepends = [ base bytestring file-embed hslua tasty text ]; @@ -251459,8 +252534,8 @@ self: { }: mkDerivation { pname = "tasty-test-reporter"; - version = "0.1.1.1"; - sha256 = "005sfxxgx4dkxw0bs6b5japx0qvzs95mzz3nvpa2ycy3v25qqaad"; + version = "0.1.1.2"; + sha256 = "1v6s3dd3ynzw0690hz1abi8l2j6zlpfj61g072w176n7is6x7p73"; libraryHaskellDepends = [ ansi-terminal base concurrent-output containers directory filepath junit-xml mtl safe-exceptions stm tagged tasty text @@ -251521,8 +252596,8 @@ self: { pname = "tasty-travis"; version = "0.2.0.2"; sha256 = "0g1qwmr11rgpvm964367mskgrjzbi34lbxzf9c0knx5ij9565gfg"; - revision = "2"; - editedCabalFile = "0m8h9r1cv38sva9k5aws1l4py4xzzmlfwik2avhm8avdr0hl71dk"; + revision = "4"; + editedCabalFile = "10kvalx02kyx2dx6shw00s689hb1qgllpagwy6nxvah6cky438ks"; libraryHaskellDepends = [ base tasty ]; testHaskellDepends = [ base tasty tasty-hunit ]; description = "Fancy Travis CI output for tasty tests"; @@ -253122,8 +254197,8 @@ self: { }: mkDerivation { pname = "termonad"; - version = "4.0.1.0"; - sha256 = "1658xnsb59hpjj692zkd3rc72x10m83sk5irgiryy0b4yqp7s3hg"; + version = "4.0.1.1"; + sha256 = "1vjxq903jws85n6aihmgif1s168afg2v9ixdxri98mzjkww10sgl"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -255498,8 +256573,8 @@ self: { }: mkDerivation { pname = "th-lego"; - version = "0.1.0.3"; - sha256 = "1gzvvxxy77pz9hxgc3hmz87w17kpiwvzzb5d3ncn13zsyc5j1mcx"; + version = "0.1.0.4"; + sha256 = "16pls283c6r4rx9aiyqacfrq5cy8d1q964fnzzk62517nicb9xyv"; libraryHaskellDepends = [ base template-haskell template-haskell-compat-v0208 text ]; @@ -255965,17 +257040,6 @@ self: { }) {}; "these-lens" = callPackage - ({ mkDerivation, base, lens, these }: - mkDerivation { - pname = "these-lens"; - version = "1.0.0.1"; - sha256 = "15c05lgmlfm1pijsa3gfvmrsgmbfl5f7mpzzqasm72ip7y8la696"; - libraryHaskellDepends = [ base lens these ]; - description = "Lenses for These"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "these-lens_1_0_1_1" = callPackage ({ mkDerivation, base, lens, these }: mkDerivation { pname = "these-lens"; @@ -255984,23 +257048,9 @@ self: { libraryHaskellDepends = [ base lens these ]; description = "Lenses for These"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "these-optics" = callPackage - ({ mkDerivation, base, optics-core, these }: - mkDerivation { - pname = "these-optics"; - version = "1"; - sha256 = "0gmsykzcjx5h6dbfny4dw3jrm33ykcw6rpngf5awwdpg3a4cfgi7"; - revision = "4"; - editedCabalFile = "1wdh7l300ckmx72ky0qjgmfv075rnzj78zv5hlgna0f9df7ib3yw"; - libraryHaskellDepends = [ base optics-core these ]; - description = "Optics for These"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "these-optics_1_0_1_1" = callPackage ({ mkDerivation, base, optics-core, these }: mkDerivation { pname = "these-optics"; @@ -256009,7 +257059,6 @@ self: { libraryHaskellDepends = [ base optics-core these ]; description = "Optics for These"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "these-skinny" = callPackage @@ -256954,19 +258003,20 @@ self: { broken = true; }) {}; - "time_1_10" = callPackage - ({ mkDerivation, base, deepseq, QuickCheck, random, tasty - , tasty-hunit, tasty-quickcheck, unix + "time_1_11" = callPackage + ({ mkDerivation, base, criterion, deepseq, QuickCheck, random + , tasty, tasty-hunit, tasty-quickcheck, unix }: mkDerivation { pname = "time"; - version = "1.10"; - sha256 = "1000fhgcvqagvyhm587zf6y9g2ffj517w0hsvvpbzj1sggyjc93s"; + version = "1.11"; + sha256 = "16kmc754gz73plwb7lnk206r9v99va8y4ilbm347h6xmi5z7avp9"; libraryHaskellDepends = [ base deepseq ]; testHaskellDepends = [ base deepseq QuickCheck random tasty tasty-hunit tasty-quickcheck unix ]; + benchmarkHaskellDepends = [ base criterion deepseq ]; description = "A time library"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; @@ -258327,8 +259377,8 @@ self: { }: mkDerivation { pname = "tlynx"; - version = "0.4.0"; - sha256 = "1gsyyw8bvlc15z6hy7cd9w6v6wgjg9ra19w9vp6kajlyzyw5j1kw"; + version = "0.4.1"; + sha256 = "07fql189rm0xc7vx3ch86n5xrhd57zn2h80gxwmr9qaqc5p9b2qp"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -261788,8 +262838,8 @@ self: { }: mkDerivation { pname = "ttn"; - version = "0.1.0.0"; - sha256 = "1jk9jhhf2if199il0brwqzrkf7l1p9rszqk9c717wqhh5niy9aip"; + version = "0.2.0.0"; + sha256 = "1bi8ksidpvncs82s02m7314znj876acz0ia61gxgk7yzm2c7nwq0"; libraryHaskellDepends = [ aeson base bytestring text time timerep ]; @@ -261802,24 +262852,21 @@ self: { }) {}; "ttn-client" = callPackage - ({ mkDerivation, aeson, base, base64-bytestring, binary, bytestring - , cayene-lpp, config-ini, directory, filepath, monad-logger - , mqtt-hs, pretty-simple, stm, text, ttn + ({ mkDerivation, async, base, base64-bytestring, binary, bytestring + , cayene-lpp, config-ini, directory, filepath, net-mqtt + , network-uri, stm, text, time, ttn }: mkDerivation { pname = "ttn-client"; - version = "0.1.0.1"; - sha256 = "1xyk1amfrsyflkrhb3xhdmszi3gcc9srw9d5zcnbdacgkzm3yn1j"; + version = "0.2.0.0"; + sha256 = "1rvnn57hr2yqj383rknnnpy4k073r8i8cjx6fg4xb1ywwk9v3i86"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson base base64-bytestring binary bytestring config-ini directory - filepath monad-logger mqtt-hs pretty-simple stm text ttn - ]; - executableHaskellDepends = [ - aeson base binary bytestring cayene-lpp mqtt-hs pretty-simple stm - text ttn + async base base64-bytestring binary bytestring cayene-lpp + config-ini directory filepath net-mqtt network-uri stm text ttn ]; + executableHaskellDepends = [ base text time ttn ]; description = "TheThingsNetwork client"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; @@ -263196,8 +264243,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "type-fun"; - version = "0.1.1"; - sha256 = "18axaln9ahrn6023pk4ig79d2qimmflikf608vgka4hhi91cfpnz"; + version = "0.1.2"; + sha256 = "1qb9h6x1npq1pc8h7n6ism5a6jccysn76czqym1f69x0qh1jjlay"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base ]; description = "Collection of widely reimplemented type families"; @@ -263491,8 +264538,8 @@ self: { }: mkDerivation { pname = "type-of-html"; - version = "1.5.1.0"; - sha256 = "14bz0gjf6rfnrisffp9lvvyzdimdhdcg5mwy5n9mrzlg4nv5pi2c"; + version = "1.5.2.0"; + sha256 = "0s53panifhmyg5xda78x509jvxpbcw2kqan7y4jxa4nysgz34qhc"; libraryHaskellDepends = [ base bytestring containers double-conversion ghc-prim text ]; @@ -264319,8 +265366,8 @@ self: { }: mkDerivation { pname = "tz"; - version = "0.1.3.4"; - sha256 = "11sg11alwlibnl62bd9s3gvhha8c523625cn6y4x10avv6jv320y"; + version = "0.1.3.5"; + sha256 = "1svqcpcpy5mydkmf42a78khxa053jxbvrbdh5jzprh2b7g0dpvlb"; libraryHaskellDepends = [ base binary bytestring containers data-default deepseq template-haskell time tzdata vector @@ -264358,6 +265405,28 @@ self: { license = stdenv.lib.licenses.asl20; }) {}; + "tzdata_0_2_20201021_0" = callPackage + ({ mkDerivation, base, bytestring, containers, deepseq, HUnit + , test-framework, test-framework-hunit, test-framework-th, unix + , vector + }: + mkDerivation { + pname = "tzdata"; + version = "0.2.20201021.0"; + sha256 = "0bkd7k0q8dflp21hzf71kbqyk0jq279z7sgwlq1pdzs2ggmnrwm9"; + enableSeparateDataOutput = true; + libraryHaskellDepends = [ + base bytestring containers deepseq vector + ]; + testHaskellDepends = [ + base bytestring HUnit test-framework test-framework-hunit + test-framework-th unix + ]; + description = "Time zone database (as files and as a module)"; + license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "u2f" = callPackage ({ mkDerivation, aeson, asn1-encoding, asn1-types, base , base64-bytestring, binary, bytestring, cryptohash, cryptonite @@ -264780,6 +265849,17 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "ukrainian-phonetics-basic" = callPackage + ({ mkDerivation, base, bytestring, mmsyn2, mmsyn5, vector }: + mkDerivation { + pname = "ukrainian-phonetics-basic"; + version = "0.1.1.0"; + sha256 = "0k7lv4lzmkjyfk5r664gmdaqbj08s1kp7n4w8lw7kn7fmxvwkraf"; + libraryHaskellDepends = [ base bytestring mmsyn2 mmsyn5 vector ]; + description = "A library to work with the basic Ukrainian phonetics and syllable segmentation"; + license = stdenv.lib.licenses.mit; + }) {}; + "ulid" = callPackage ({ mkDerivation, base, binary, bytestring, crypto-api, deepseq , format-numbers, hashable, hspec, random, text, time @@ -264900,17 +265980,18 @@ self: { "unbeliever" = callPackage ({ mkDerivation, base, bytestring, core-data, core-program - , core-text, fingertree, gauge, hashable, hspec, safe-exceptions - , text, text-short + , core-text, fingertree, gauge, hashable, hspec, prettyprinter + , safe-exceptions, text, text-short, unordered-containers }: mkDerivation { pname = "unbeliever"; - version = "0.10.0.6"; - sha256 = "08rw2krphvs2z0ic19mfwlz3fcmpnbwbpvp7ks22pasi2zy45sb2"; + version = "0.10.0.7"; + sha256 = "17yjw8lgwm93hhf4rk0npj35h77jfig3ziampdmg5cjhyy2h4sd7"; libraryHaskellDepends = [ base core-data core-program core-text ]; testHaskellDepends = [ base bytestring core-data core-program core-text fingertree - hashable hspec safe-exceptions text text-short + hashable hspec prettyprinter safe-exceptions text text-short + unordered-containers ]; benchmarkHaskellDepends = [ base bytestring core-data core-program core-text gauge text @@ -265127,6 +266208,20 @@ self: { broken = true; }) {}; + "uncaught-exception" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "uncaught-exception"; + version = "0.1.0"; + sha256 = "176xnsfbj9xwha1s03ly7fpirgjkrp74smgrgx16v4wb0r4ifgxn"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base ]; + executableHaskellDepends = [ base ]; + description = "Customize uncaught exception handling"; + license = stdenv.lib.licenses.mpl20; + }) {}; + "uncertain" = callPackage ({ mkDerivation, ad, base, base-compat, containers, free , mwc-random, primitive, transformers @@ -265475,8 +266570,8 @@ self: { }: mkDerivation { pname = "unicode-transforms"; - version = "0.3.7"; - sha256 = "0pgxb4znvr39n0f7y5q0bdajc4l96zsih0a43n90qjlhj9084rp8"; + version = "0.3.7.1"; + sha256 = "1010sahi4mjzqmxqlj3w73rlymbl2370x5vizjqbx7mb86kxzx4f"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base bytestring ghc-prim text ]; @@ -265811,8 +266906,8 @@ self: { ({ mkDerivation, base, vector }: mkDerivation { pname = "uniqueness-periods-vector"; - version = "0.3.0.0"; - sha256 = "139xs292irnsw7574nsrpw5dqsg0g7j71p2jvq6h2bl9wnndsi8b"; + version = "0.3.1.1"; + sha256 = "0nl6rpxsmjw4zsw5x550wlifhrhy4pzkvjxhklb0183n9pl8nkkd"; libraryHaskellDepends = [ base vector ]; description = "Generalization of the uniqueness-periods and uniqueness-periods-general packages functionality"; license = stdenv.lib.licenses.mit; @@ -265822,16 +266917,16 @@ self: { ({ mkDerivation, base, vector }: mkDerivation { pname = "uniqueness-periods-vector-common"; - version = "0.5.0.0"; - sha256 = "1xq5ikwfljbgxh09dp4z3hydz37zqigms9n11bqrmxhq3b6kzk0y"; + version = "0.5.1.1"; + sha256 = "1h7xv3g7rpa2bj7mlydvfn9g14j911jrarpl7665h3rfb6fdq4zq"; libraryHaskellDepends = [ base vector ]; description = "Generalization of the dobutokO-poetry-general package functionality"; license = stdenv.lib.licenses.mit; }) {}; "uniqueness-periods-vector-examples" = callPackage - ({ mkDerivation, base, lists-flines, mmsyn6ukr, parallel - , phonetic-languages-ukrainian, print-info + ({ mkDerivation, base, bytestring, lists-flines, mmsyn6ukr + , parallel, phonetic-languages-ukrainian, print-info , uniqueness-periods-vector, uniqueness-periods-vector-common , uniqueness-periods-vector-filters , uniqueness-periods-vector-general @@ -265840,13 +266935,18 @@ self: { }: mkDerivation { pname = "uniqueness-periods-vector-examples"; - version = "0.11.0.0"; - sha256 = "17ls9n8jdwp888xb5zd4m0f8l5xddc7962aa44wnxlc24gaim436"; - isLibrary = false; + version = "0.13.1.0"; + sha256 = "0z6jglwli11845x4nlk8b3wk4d6j6i1m7jr3vhgri64g34qj1767"; + isLibrary = true; isExecutable = true; + libraryHaskellDepends = [ + base lists-flines uniqueness-periods-vector + uniqueness-periods-vector-common + uniqueness-periods-vector-properties vector + ]; executableHaskellDepends = [ - base lists-flines mmsyn6ukr parallel phonetic-languages-ukrainian - print-info uniqueness-periods-vector + base bytestring lists-flines mmsyn6ukr parallel + phonetic-languages-ukrainian print-info uniqueness-periods-vector uniqueness-periods-vector-common uniqueness-periods-vector-filters uniqueness-periods-vector-general uniqueness-periods-vector-properties @@ -265873,8 +266973,8 @@ self: { }: mkDerivation { pname = "uniqueness-periods-vector-general"; - version = "0.5.0.0"; - sha256 = "1rxv50s8fwvhlz0264ylg8lph4ifdm3gc2by5v8ry8xqclgaxf7l"; + version = "0.5.1.0"; + sha256 = "1abqcxrlchhi5jag6rvaar48ip356p9r1zcndbja72z4dxg9b9q0"; libraryHaskellDepends = [ base print-info uniqueness-periods-vector-common vector ]; @@ -265890,8 +266990,8 @@ self: { }: mkDerivation { pname = "uniqueness-periods-vector-properties"; - version = "0.5.2.0"; - sha256 = "04gg6mcfd27yv2305gmbw1bxcn480933h9cw16lir5swifymbzx5"; + version = "0.5.5.0"; + sha256 = "08pzazvgg0nldybbj1558xvipn3wafqm9491fk2xcrf4na5pc42l"; libraryHaskellDepends = [ base mmsyn6ukr mmsyn7s phonetic-languages-rhythmicity phonetic-languages-ukrainian uniqueness-periods-vector @@ -266556,6 +267656,17 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "unliftio-path" = callPackage + ({ mkDerivation, base, exceptions, path, time, unliftio }: + mkDerivation { + pname = "unliftio-path"; + version = "0.0.2.0"; + sha256 = "1ila58yyk2vfshaz6d5kp4vdcgjrlnwnqnrjm949qlcv36srvzg9"; + libraryHaskellDepends = [ base exceptions path time unliftio ]; + description = "UnliftIO using well-typed Paths"; + license = stdenv.lib.licenses.mit; + }) {}; + "unliftio-pool" = callPackage ({ mkDerivation, base, resource-pool, time, transformers , unliftio-core @@ -267184,6 +268295,24 @@ self: { broken = true; }) {}; + "urbit-airlock" = callPackage + ({ mkDerivation, aeson, base, bytestring, conduit, conduit-extra + , http-client, modern-uri, req, req-conduit, text, uuid + }: + mkDerivation { + pname = "urbit-airlock"; + version = "0.1.0.0"; + sha256 = "1w6mkdx999jxr2c9004cp1n550wjnhj9gvi76nhq5bcibnl62jqw"; + libraryHaskellDepends = [ + aeson base bytestring conduit conduit-extra http-client modern-uri + req req-conduit text uuid + ]; + description = "Talk to Urbit from Haskell"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "urbit-hob" = callPackage ({ mkDerivation, base, bytestring, criterion, deepseq, hspec , hspec-core, murmur3, QuickCheck, text, vector @@ -267324,8 +268453,8 @@ self: { }: mkDerivation { pname = "uri-encode"; - version = "1.5.0.6"; - sha256 = "1w74dqvcl0s26p1s7rszmfj3zphv4bcflpp54iq1kxsrqpd1bbv8"; + version = "1.5.0.7"; + sha256 = "0lj2h701af12539p957rw24bxr07mfqd5r4h52i42f43ax165767"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -268516,6 +269645,8 @@ self: { ]; description = "A program removing all version constraints of dependencies in .cabal file"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "uvector" = callPackage @@ -268810,8 +269941,8 @@ self: { pname = "validated-literals"; version = "0.3.0"; sha256 = "1k77jp19kl7h4v9hl2jhsmbq8dhzl8z9sgkw1jxx1rblm3fszjx1"; - revision = "1"; - editedCabalFile = "1l6b488pnarmx4a1cysbx0lpcx0kvrs4x3bc4sinpnzv0r5az4z4"; + revision = "3"; + editedCabalFile = "0m7iggm5676nayzkj0ip866qg8d4ld6gv38krl02z020m96zax5b"; libraryHaskellDepends = [ base template-haskell ]; testHaskellDepends = [ base bytestring deepseq tasty tasty-hunit tasty-travis @@ -270440,6 +271571,27 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "versions_4_0_1" = callPackage + ({ mkDerivation, base, deepseq, hashable, megaparsec, microlens + , parser-combinators, QuickCheck, tasty, tasty-hunit + , tasty-quickcheck, text + }: + mkDerivation { + pname = "versions"; + version = "4.0.1"; + sha256 = "1s8bnxq3asq4wwgbsfvhkl6yih1sic9v8ylimcxwnvmdlh5ks58a"; + libraryHaskellDepends = [ + base deepseq hashable megaparsec parser-combinators text + ]; + testHaskellDepends = [ + base megaparsec microlens QuickCheck tasty tasty-hunit + tasty-quickcheck text + ]; + description = "Types and parsers for software version numbers"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "vflow-types" = callPackage ({ mkDerivation, aeson, base, bytestring, ip, json-alt , json-autotype, neat-interpolation, QuickCheck, quickcheck-classes @@ -271513,8 +272665,8 @@ self: { ({ mkDerivation, base, bytestring, transformers, vector, vulkan }: mkDerivation { pname = "vulkan"; - version = "3.6.8"; - sha256 = "1rrswgz7djm4zh6qx1f28lkspidip6r0mqkbk8gcfvv7vikz0vxz"; + version = "3.6.10"; + sha256 = "028c6n6f62nnwszb4px5mhg2spqb2z4psm06fbc2r1qw6vpqhxn6"; libraryHaskellDepends = [ base bytestring transformers vector ]; librarySystemDepends = [ vulkan ]; description = "Bindings to the Vulkan graphics API"; @@ -271546,6 +272698,8 @@ self: { ]; description = "Utils for the vulkan package"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "waargonaut" = callPackage @@ -274236,12 +275390,16 @@ self: { }) {}; "web-plugins" = callPackage - ({ mkDerivation, base, containers, mtl, stm, text }: + ({ mkDerivation, base, binary, bytestring, containers, http-types + , mtl, stm, text + }: mkDerivation { pname = "web-plugins"; - version = "0.2.9.1"; - sha256 = "13wbfl8v5milx2s4lyiw4b44gk5syqbaaqwdxz5sclpxs2ilxvq2"; - libraryHaskellDepends = [ base containers mtl stm text ]; + version = "0.4.0"; + sha256 = "1r3bvwlr7p5vfvibw2ghj7nxw4hgapqqpsrhr55ni8ivlrprs9fh"; + libraryHaskellDepends = [ + base binary bytestring containers http-types mtl stm text + ]; description = "dynamic plugin system for web applications"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -274581,6 +275739,8 @@ self: { ]; description = "Web Authentication API"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "webby" = callPackage @@ -274591,8 +275751,8 @@ self: { }: mkDerivation { pname = "webby"; - version = "1.0.0"; - sha256 = "0pz80i94cqk2w07135mw7lmh7yvc3vn8pikav5l8pvq3hcfmhk0g"; + version = "1.0.1"; + sha256 = "00sdw1ly5848f4yq64j4an8w1c83gwry6n8bp7z7csh1y0lz4mm3"; libraryHaskellDepends = [ aeson base binary bytestring formatting http-api-data http-types relude resourcet text unliftio unliftio-core unordered-containers @@ -274605,6 +275765,8 @@ self: { ]; description = "A super-simple web server framework"; license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "webcloud" = callPackage @@ -276543,8 +277705,8 @@ self: { }: mkDerivation { pname = "wolf"; - version = "0.3.47"; - sha256 = "1p6d61zk0yr55f7mk7cv1fyjs23aximsy1ayjknvc3rwsijqx264"; + version = "0.3.48"; + sha256 = "1fg3wxhc37vl54rb2ikr2mpwdnhsmc3zw7111jignwq4q9nb8w5v"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -276804,6 +277966,8 @@ self: { doHaddock = false; description = "arbitrary bit size Words"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; }) {}; "wordpass" = callPackage @@ -279820,6 +280984,22 @@ self: { broken = true; }) {}; + "xmonad-dbus" = callPackage + ({ mkDerivation, base, dbus, utf8-string }: + mkDerivation { + pname = "xmonad-dbus"; + version = "0.1.0.0"; + sha256 = "18phy3wxags8cmgs9bdkhwb4gy8fr72j25b18nk44q8956a3060p"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base dbus utf8-string ]; + executableHaskellDepends = [ base dbus utf8-string ]; + testHaskellDepends = [ base dbus utf8-string ]; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + broken = true; + }) {}; + "xmonad-entryhelper" = callPackage ({ mkDerivation, base, directory, extensible-exceptions, filepath , mtl, process, unix, X11, xmonad, xmonad-contrib @@ -281068,8 +282248,8 @@ self: { }: mkDerivation { pname = "yamlparse-applicative"; - version = "0.1.0.1"; - sha256 = "089s5f3i3yz833g7q2rd55v9hn93cdzprhniymw37qdmhv5jw960"; + version = "0.1.0.2"; + sha256 = "1bzf3kbhccxzg88amyk3ys3bwfi99fhmfa843sxn53nrbgphdw09"; libraryHaskellDepends = [ aeson base bytestring containers optparse-applicative path path-io prettyprinter scientific text unordered-containers validity @@ -281517,6 +282697,8 @@ self: { pname = "yeamer"; version = "0.1.0.5"; sha256 = "0c8yrh43h9qhhdiz0dnrh00frfz0cymzzz9k723jnp03b8994srq"; + revision = "1"; + editedCabalFile = "0ivw54131s99kblah7n0flccb9h6qfiz55ifs2cwjwxxmrs9xi1n"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -282448,6 +283630,44 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "yesod-core_1_6_18_5" = callPackage + ({ mkDerivation, aeson, async, auto-update, base, blaze-html + , blaze-markup, bytestring, case-insensitive, cereal, clientsession + , conduit, conduit-extra, containers, cookie, deepseq, fast-logger + , gauge, hspec, hspec-expectations, http-types, HUnit, memory + , monad-logger, mtl, network, parsec, path-pieces, primitive + , random, resourcet, shakespeare, streaming-commons + , template-haskell, text, time, transformers, unix-compat, unliftio + , unordered-containers, vector, wai, wai-extra, wai-logger, warp + , word8 + }: + mkDerivation { + pname = "yesod-core"; + version = "1.6.18.5"; + sha256 = "11f51x3slqnan07fp2bxswd3y994wccqg48gakdk272i2bcg2vfq"; + libraryHaskellDepends = [ + aeson auto-update base blaze-html blaze-markup bytestring + case-insensitive cereal clientsession conduit conduit-extra + containers cookie deepseq fast-logger http-types memory + monad-logger mtl parsec path-pieces primitive random resourcet + shakespeare template-haskell text time transformers unix-compat + unliftio unordered-containers vector wai wai-extra wai-logger warp + word8 + ]; + testHaskellDepends = [ + async base bytestring clientsession conduit conduit-extra + containers cookie hspec hspec-expectations http-types HUnit network + path-pieces random resourcet shakespeare streaming-commons + template-haskell text transformers unliftio wai wai-extra warp + ]; + benchmarkHaskellDepends = [ + base blaze-html bytestring gauge shakespeare text + ]; + description = "Creation of type-safe, RESTful web applications"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "yesod-crud" = callPackage ({ mkDerivation, base, classy-prelude, containers, MissingH , monad-control, persistent, random, safe, stm, uuid, yesod-core diff --git a/pkgs/development/interpreters/alda/default.nix b/pkgs/development/interpreters/alda/default.nix index 3e5273d6329..b82b0b978f9 100644 --- a/pkgs/development/interpreters/alda/default.nix +++ b/pkgs/development/interpreters/alda/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "alda"; - version = "1.4.2"; + version = "1.4.3"; src = fetchurl { url = "https://github.com/alda-lang/alda/releases/download/${version}/alda"; - sha256 = "1d0412jw37gh1y7i8cmaml8r4sn516i6pxmm8m16yprqmz6glx28"; + sha256 = "1c9rbwb3ga8w7zi0ndqq02hjr4drdw8s509qxxd3fh5vfy6x3qi2"; }; dontUnpack = true; @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "A music programming language for musicians."; + description = "A music programming language for musicians"; homepage = "https://alda.io"; license = licenses.epl10; maintainers = [ maintainers.ericdallo ]; diff --git a/pkgs/development/interpreters/dart/default.nix b/pkgs/development/interpreters/dart/default.nix index 050e7f14979..7d185edb1d1 100644 --- a/pkgs/development/interpreters/dart/default.nix +++ b/pkgs/development/interpreters/dart/default.nix @@ -36,6 +36,10 @@ let url = "${base}/${stable_version}/release/${version}/sdk/dartsdk-linux-${aarch64}-release.zip"; sha256 = "1p66fkdh1kv0ypmadmg67c3y3li3aaf1lahqh2g6r6qrzbh5da2p"; }; + "2.10.0-x86_64-linux" = fetchurl { + url = "${base}/${stable_version}/release/${version}/sdk/dartsdk-linux-${x86_64}-release.zip"; + sha256 = "0dncmsfbwcn3ygflhp83i6z4bvc02fbpaq1vzdzw8xdk3sbynchb"; + }; "2.9.0-4.0.dev-x86_64-linux" = fetchurl { url = "${base}/${dev_version}/release/${version}/sdk/dartsdk-linux-${x86_64}-release.zip"; sha256 = "16d9842fb3qbc0hy0zmimav9zndfkq96glgykj20xssc88qpjk2r"; @@ -48,6 +52,10 @@ let url = "${base}/${dev_version}/release/${version}/sdk/dartsdk-linux-${aarch64}-release.zip"; sha256 = "1x6mlmc4hccmx42k7srhma18faxpxvghjwqahna80508rdpljwgc"; }; + "2.11.0-161.0.dev-x86_64-linux" = fetchurl { + url = "${base}/${dev_version}/release/${version}/sdk/dartsdk-linux-${x86_64}-release.zip"; + sha256 = "05difz4w2fyh2yq5p5pkrqk59jqljlxhc1i6lmy5kihh6z69r12i"; + }; }; in diff --git a/pkgs/development/interpreters/duktape/default.nix b/pkgs/development/interpreters/duktape/default.nix index 53cbbad8e55..8dbfee20641 100644 --- a/pkgs/development/interpreters/duktape/default.nix +++ b/pkgs/development/interpreters/duktape/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { pname = "duktape"; - version = "2.5.0"; + version = "2.6.0"; src = fetchurl { url = "http://duktape.org/duktape-${version}.tar.xz"; - sha256 = "05ln6b2a0s8ynz28armwqs2r5zjyi3cxi0dx6ahnxlqw19b13m43"; + sha256 = "19szwxzvl2g65fw95ggvb8h0ma5bd9vvnnccn59hwnc4dida1x4n"; }; buildPhase = '' diff --git a/pkgs/development/interpreters/elixir/1.11.nix b/pkgs/development/interpreters/elixir/1.11.nix new file mode 100644 index 00000000000..3dcd8c19ba8 --- /dev/null +++ b/pkgs/development/interpreters/elixir/1.11.nix @@ -0,0 +1,9 @@ +{ mkDerivation }: + +# How to obtain `sha256`: +# nix-prefetch-url --unpack https://github.com/elixir-lang/elixir/archive/v${version}.tar.gz +mkDerivation { + version = "1.11.1"; + sha256 = "0czyv98sq9drlvdwv3gw9vnhn8qa3va4xh5vdqpg7m6b93l1r3p1"; + minimumOTPVersion = "21"; +} diff --git a/pkgs/development/interpreters/guile/default.nix b/pkgs/development/interpreters/guile/default.nix index 68df200835f..52a3488d051 100644 --- a/pkgs/development/interpreters/guile/default.nix +++ b/pkgs/development/interpreters/guile/default.nix @@ -38,7 +38,13 @@ libtool libunistring ]; - enableParallelBuilding = true; + # According to Bernhard M. Wiedemann on + # #reproducible-builds on irc.oftc.net, (2020-01-29): they had to + # build Guile without parallel builds to make it reproducible. + # + # re: https://issues.guix.gnu.org/issue/20272 + # re: https://build.opensuse.org/request/show/732638 + enableParallelBuilding = false; patches = [ ./eai_system.patch @@ -109,4 +115,3 @@ ''; }; }) - diff --git a/pkgs/development/interpreters/joker/default.nix b/pkgs/development/interpreters/joker/default.nix index 7f773882d8f..2eb01b37644 100644 --- a/pkgs/development/interpreters/joker/default.nix +++ b/pkgs/development/interpreters/joker/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "joker"; - version = "0.15.6"; + version = "0.15.7"; src = fetchFromGitHub { rev = "v${version}"; owner = "candid82"; repo = "joker"; - sha256 = "1yi9q8ibia6gz6s30i3bjrbmlhj6knrb3d73113dxrs8abi1mkbh"; + sha256 = "01mlizkflajad4759yl60ymibymrvanhc22jaffj50k9b77v97kq"; }; vendorSha256 = "031ban30kx84r54fj9aq96pwkz9nqh4p9yzs4l8i1wqmy52rldvl"; diff --git a/pkgs/development/interpreters/perl/default.nix b/pkgs/development/interpreters/perl/default.nix index a817861f6f3..77dc53cf8b3 100644 --- a/pkgs/development/interpreters/perl/default.nix +++ b/pkgs/development/interpreters/perl/default.nix @@ -36,8 +36,7 @@ let patches = [ # Do not look in /usr etc. for dependencies. - (if (versionOlder version "5.29.6") then ./no-sys-dirs-5.26.patch - else if (versionOlder version "5.31.1") then ./no-sys-dirs-5.29.patch + (if (versionOlder version "5.31.1") then ./no-sys-dirs-5.29.patch else ./no-sys-dirs-5.31.patch) ] ++ optional (versionOlder version "5.29.6") @@ -175,11 +174,11 @@ let priority = 6; # in `buildEnv' (including the one inside `perl.withPackages') the library files will have priority over files in `perl` }; } // optionalAttrs (stdenv.buildPlatform != stdenv.hostPlatform) rec { - crossVersion = "f59d2b6a179760230d925550db78b93c410433e4"; # Sept 22, 2020 + crossVersion = "65e06e238ccb949e8399bdebc6d7fd798c34127b"; # Oct 21, 2020 perl-cross-src = fetchurl { url = "https://github.com/arsv/perl-cross/archive/${crossVersion}.tar.gz"; - sha256 = "1r07waq4ik4gf32c046f27pglwcy5rv9b6whj6497xbxfmaa5562"; + sha256 = "1rk9kbvkj7cl3bvv6cph20f0hcb6y9ijgcd4rxj7aq98fxzvyhxx"; }; depsBuildBuild = [ buildPackages.stdenv.cc makeWrapper ]; @@ -215,7 +214,7 @@ in { perldevel = common { perl = pkgs.perldevel; buildPerl = buildPackages.perldevel; - version = "5.33.2"; - sha256 = "0zrb3d744argzy5idmafk92iprq9qbhzqbg4xj5w2i80sgg41212"; + version = "5.33.3"; + sha256 = "1k9pyy8d3wx8cpp5ss7hjwf9sxgga5gd0x2nq3vnqblkxfna0jsg"; }; } diff --git a/pkgs/development/interpreters/perl/no-sys-dirs-5.26.patch b/pkgs/development/interpreters/perl/no-sys-dirs-5.26.patch deleted file mode 100644 index ad65d1339f3..00000000000 --- a/pkgs/development/interpreters/perl/no-sys-dirs-5.26.patch +++ /dev/null @@ -1,250 +0,0 @@ -diff -ru -x '*~' -x '*.rej' perl-5.20.0-orig/Configure perl-5.20.0/Configure ---- perl-5.20.0-orig/Configure 2014-05-26 15:34:18.000000000 +0200 -+++ perl-5.20.0/Configure 2014-06-25 10:43:35.368285986 +0200 -@@ -106,15 +106,7 @@ - fi - - : Proper PATH setting --paths='/bin /usr/bin /usr/local/bin /usr/ucb /usr/local /usr/lbin' --paths="$paths /opt/bin /opt/local/bin /opt/local /opt/lbin" --paths="$paths /usr/5bin /etc /usr/gnu/bin /usr/new /usr/new/bin /usr/nbin" --paths="$paths /opt/gnu/bin /opt/new /opt/new/bin /opt/nbin" --paths="$paths /sys5.3/bin /sys5.3/usr/bin /bsd4.3/bin /bsd4.3/usr/ucb" --paths="$paths /bsd4.3/usr/bin /usr/bsd /bsd43/bin /opt/ansic/bin /usr/ccs/bin" --paths="$paths /etc /usr/lib /usr/ucblib /lib /usr/ccs/lib" --paths="$paths /sbin /usr/sbin /usr/libexec" --paths="$paths /system/gnu_library/bin" -+paths='' - - for p in $paths - do -@@ -1337,8 +1329,7 @@ - archname='' - : Possible local include directories to search. - : Set locincpth to "" in a hint file to defeat local include searches. --locincpth="/usr/local/include /opt/local/include /usr/gnu/include" --locincpth="$locincpth /opt/gnu/include /usr/GNU/include /opt/GNU/include" -+locincpth="" - : - : no include file wanted by default - inclwanted='' -@@ -1349,17 +1340,12 @@ - - libnames='' - : change the next line if compiling for Xenix/286 on Xenix/386 --xlibpth='/usr/lib/386 /lib/386' -+xlibpth='' - : Possible local library directories to search. --loclibpth="/usr/local/lib /opt/local/lib /usr/gnu/lib" --loclibpth="$loclibpth /opt/gnu/lib /usr/GNU/lib /opt/GNU/lib" -+loclibpth="" - - : general looking path for locating libraries --glibpth="/lib /usr/lib $xlibpth" --glibpth="$glibpth /usr/ccs/lib /usr/ucblib /usr/local/lib" --test -f /usr/shlib/libc.so && glibpth="/usr/shlib $glibpth" --test -f /shlib/libc.so && glibpth="/shlib $glibpth" --test -d /usr/lib64 && glibpth="$glibpth /lib64 /usr/lib64 /usr/local/lib64" -+glibpth="" - - : Private path used by Configure to find libraries. Its value - : is prepended to libpth. This variable takes care of special -@@ -1391,8 +1377,6 @@ - libswanted="$libswanted m crypt sec util c cposix posix ucb bsd BSD" - : We probably want to search /usr/shlib before most other libraries. - : This is only used by the lib/ExtUtils/MakeMaker.pm routine extliblist. --glibpth=`echo " $glibpth " | sed -e 's! /usr/shlib ! !'` --glibpth="/usr/shlib $glibpth" - : Do not use vfork unless overridden by a hint file. - usevfork=false - -@@ -2446,7 +2430,6 @@ - zip - " - pth=`echo $PATH | sed -e "s/$p_/ /g"` --pth="$pth $sysroot/lib $sysroot/usr/lib" - for file in $loclist; do - eval xxx=\$$file - case "$xxx" in -@@ -4936,7 +4919,7 @@ - : Set private lib path - case "$plibpth" in - '') if ./mips; then -- plibpth="$incpath/usr/lib $sysroot/usr/local/lib $sysroot/usr/ccs/lib" -+ plibpth="$incpath/usr/lib" - fi;; - esac - case "$libpth" in -@@ -8600,13 +8583,8 @@ - echo " " - case "$sysman" in - '') -- syspath='/usr/share/man/man1 /usr/man/man1' -- syspath="$syspath /usr/man/mann /usr/man/manl /usr/man/local/man1" -- syspath="$syspath /usr/man/u_man/man1" -- syspath="$syspath /usr/catman/u_man/man1 /usr/man/l_man/man1" -- syspath="$syspath /usr/local/man/u_man/man1 /usr/local/man/l_man/man1" -- syspath="$syspath /usr/man/man.L /local/man/man1 /usr/local/man/man1" -- sysman=`./loc . /usr/man/man1 $syspath` -+ syspath='' -+ sysman='' - ;; - esac - if $test -d "$sysman"; then -@@ -19900,9 +19878,10 @@ - case "$full_ar" in - '') full_ar=$ar ;; - esac -+full_ar=ar - - : Store the full pathname to the sed program for use in the C program --full_sed=$sed -+full_sed=sed - - : see what type gids are declared as in the kernel - echo " " -Only in perl-5.20.0/: Configure.orig -diff -ru -x '*~' -x '*.rej' perl-5.20.0-orig/ext/Errno/Errno_pm.PL perl-5.20.0/ext/Errno/Errno_pm.PL ---- perl-5.20.0-orig/ext/Errno/Errno_pm.PL 2014-05-26 15:34:20.000000000 +0200 -+++ perl-5.20.0/ext/Errno/Errno_pm.PL 2014-06-25 10:31:24.317970047 +0200 -@@ -126,11 +126,7 @@ - if ($dep =~ /(\S+errno\.h)/) { - $file{$1} = 1; - } -- } elsif ($^O eq 'linux' && -- $Config{gccversion} ne '' && -- $Config{gccversion} !~ /intel/i -- # might be using, say, Intel's icc -- ) { -+ } elsif (0) { - # When cross-compiling we may store a path for gcc's "sysroot" option: - my $sysroot = $Config{sysroot} || ''; - # Some Linuxes have weird errno.hs which generate -Only in perl-5.20.0/ext/Errno: Errno_pm.PL.orig -diff -ru -x '*~' -x '*.rej' perl-5.20.0-orig/hints/freebsd.sh perl-5.20.0/hints/freebsd.sh ---- perl-5.20.0-orig/hints/freebsd.sh 2014-01-31 22:55:51.000000000 +0100 -+++ perl-5.20.0/hints/freebsd.sh 2014-06-25 10:25:53.263964680 +0200 -@@ -119,21 +119,21 @@ - objformat=`/usr/bin/objformat` - if [ x$objformat = xaout ]; then - if [ -e /usr/lib/aout ]; then -- libpth="/usr/lib/aout /usr/local/lib /usr/lib" -- glibpth="/usr/lib/aout /usr/local/lib /usr/lib" -+ libpth="" -+ glibpth="" - fi - lddlflags='-Bshareable' - else -- libpth="/usr/lib /usr/local/lib" -- glibpth="/usr/lib /usr/local/lib" -+ libpth="" -+ glibpth="" - ldflags="-Wl,-E " - lddlflags="-shared " - fi - cccdlflags='-DPIC -fPIC' - ;; - *) -- libpth="/usr/lib /usr/local/lib" -- glibpth="/usr/lib /usr/local/lib" -+ libpth="" -+ glibpth="" - ldflags="-Wl,-E " - lddlflags="-shared " - cccdlflags='-DPIC -fPIC' -diff -ru -x '*~' -x '*.rej' perl-5.20.0-orig/hints/linux.sh perl-5.20.0/hints/linux.sh ---- perl-5.20.0-orig/hints/linux.sh 2014-05-26 15:34:20.000000000 +0200 -+++ perl-5.20.0/hints/linux.sh 2014-06-25 10:33:47.354883843 +0200 -@@ -150,25 +150,6 @@ - ;; - esac - --# Ubuntu 11.04 (and later, presumably) doesn't keep most libraries --# (such as -lm) in /lib or /usr/lib. So we have to ask gcc to tell us --# where to look. We don't want gcc's own libraries, however, so we --# filter those out. --# This could be conditional on Unbuntu, but other distributions may --# follow suit, and this scheme seems to work even on rather old gcc's. --# This unconditionally uses gcc because even if the user is using another --# compiler, we still need to find the math library and friends, and I don't --# know how other compilers will cope with that situation. --# Morever, if the user has their own gcc earlier in $PATH than the system gcc, --# we don't want its libraries. So we try to prefer the system gcc --# Still, as an escape hatch, allow Configure command line overrides to --# plibpth to bypass this check. --if [ -x /usr/bin/gcc ] ; then -- gcc=/usr/bin/gcc --else -- gcc=gcc --fi -- - case "$plibpth" in - '') plibpth=`LANG=C LC_ALL=C $gcc $ccflags $ldflags -print-search-dirs | grep libraries | - cut -f2- -d= | tr ':' $trnl | grep -v 'gcc' | sed -e 's:/$::'` -@@ -178,32 +159,6 @@ - ;; - esac - --case "$libc" in --'') --# If you have glibc, then report the version for ./myconfig bug reporting. --# (Configure doesn't need to know the specific version since it just uses --# gcc to load the library for all tests.) --# We don't use __GLIBC__ and __GLIBC_MINOR__ because they --# are insufficiently precise to distinguish things like --# libc-2.0.6 and libc-2.0.7. -- for p in $plibpth -- do -- for trylib in libc.so.6 libc.so -- do -- if $test -e $p/$trylib; then -- libc=`ls -l $p/$trylib | awk '{print $NF}'` -- if $test "X$libc" != X; then -- break -- fi -- fi -- done -- if $test "X$libc" != X; then -- break -- fi -- done -- ;; --esac -- - if ${sh:-/bin/sh} -c exit; then - echo '' - echo 'You appear to have a working bash. Good.' -@@ -367,33 +322,6 @@ - ;; - esac - --# SuSE8.2 has /usr/lib/libndbm* which are ld scripts rather than --# true libraries. The scripts cause binding against static --# version of -lgdbm which is a bad idea. So if we have 'nm' --# make sure it can read the file --# NI-S 2003/08/07 --case "$nm" in -- '') ;; -- *) -- for p in $plibpth -- do -- if $test -r $p/libndbm.so; then -- if $nm $p/libndbm.so >/dev/null 2>&1 ; then -- echo 'Your shared -lndbm seems to be a real library.' -- _libndbm_real=1 -- break -- fi -- fi -- done -- if $test "X$_libndbm_real" = X; then -- echo 'Your shared -lndbm is not a real library.' -- set `echo X "$libswanted "| sed -e 's/ ndbm / /'` -- shift -- libswanted="$*" -- fi -- ;; --esac -- - # Linux on Synology. - if [ -f /etc/synoinfo.conf -a -d /usr/syno ]; then - # Tested on Synology DS213 and DS413 diff --git a/pkgs/development/interpreters/php/default.nix b/pkgs/development/interpreters/php/default.nix index 8286de744ed..dd296eb10d8 100644 --- a/pkgs/development/interpreters/php/default.nix +++ b/pkgs/development/interpreters/php/default.nix @@ -177,7 +177,7 @@ let ++ lib.optional (!cgiSupport) "--disable-cgi" ++ lib.optional (!cliSupport) "--disable-cli" ++ lib.optional fpmSupport "--enable-fpm" - ++ lib.optional pearSupport [ "--with-pear=$(out)/lib/php/pear" "--enable-xml" "--with-libxml" ] + ++ lib.optional pearSupport [ "--with-pear" "--enable-xml" "--with-libxml" ] ++ lib.optionals (pearSupport && (lib.versionOlder version "7.4")) [ "--enable-libxml" "--with-libxml-dir=${libxml2.dev}" diff --git a/pkgs/development/interpreters/python/cpython/3.10/no-ldconfig.patch b/pkgs/development/interpreters/python/cpython/3.10/no-ldconfig.patch new file mode 100644 index 00000000000..a1f9d68eb16 --- /dev/null +++ b/pkgs/development/interpreters/python/cpython/3.10/no-ldconfig.patch @@ -0,0 +1,100 @@ +From 597e73f2a4b2f0b508127931b36d5540d6941823 Mon Sep 17 00:00:00 2001 +From: Frederik Rietdijk +Date: Mon, 28 Aug 2017 09:24:06 +0200 +Subject: [PATCH] Don't use ldconfig + +--- + Lib/ctypes/util.py | 70 ++---------------------------------------------------- + 1 file changed, 2 insertions(+), 68 deletions(-) + +diff --git a/Lib/ctypes/util.py b/Lib/ctypes/util.py +index 5e8b31a854..7b45ce6c15 100644 +--- a/Lib/ctypes/util.py ++++ b/Lib/ctypes/util.py +@@ -94,46 +94,7 @@ elif os.name == "posix": + import re, tempfile + + def _findLib_gcc(name): +- # Run GCC's linker with the -t (aka --trace) option and examine the +- # library name it prints out. The GCC command will fail because we +- # haven't supplied a proper program with main(), but that does not +- # matter. +- expr = os.fsencode(r'[^\(\)\s]*lib%s\.[^\(\)\s]*' % re.escape(name)) +- +- c_compiler = shutil.which('gcc') +- if not c_compiler: +- c_compiler = shutil.which('cc') +- if not c_compiler: +- # No C compiler available, give up +- return None +- +- temp = tempfile.NamedTemporaryFile() +- try: +- args = [c_compiler, '-Wl,-t', '-o', temp.name, '-l' + name] +- +- env = dict(os.environ) +- env['LC_ALL'] = 'C' +- env['LANG'] = 'C' +- try: +- proc = subprocess.Popen(args, +- stdout=subprocess.PIPE, +- stderr=subprocess.STDOUT, +- env=env) +- except OSError: # E.g. bad executable +- return None +- with proc: +- trace = proc.stdout.read() +- finally: +- try: +- temp.close() +- except FileNotFoundError: +- # Raised if the file was already removed, which is the normal +- # behaviour of GCC if linking fails +- pass +- res = re.search(expr, trace) +- if not res: +- return None +- return os.fsdecode(res.group(0)) ++ return None + + + if sys.platform == "sunos5": +@@ -255,34 +216,7 @@ elif os.name == "posix": + else: + + def _findSoname_ldconfig(name): +- import struct +- if struct.calcsize('l') == 4: +- machine = os.uname().machine + '-32' +- else: +- machine = os.uname().machine + '-64' +- mach_map = { +- 'x86_64-64': 'libc6,x86-64', +- 'ppc64-64': 'libc6,64bit', +- 'sparc64-64': 'libc6,64bit', +- 's390x-64': 'libc6,64bit', +- 'ia64-64': 'libc6,IA-64', +- } +- abi_type = mach_map.get(machine, 'libc6') +- +- # XXX assuming GLIBC's ldconfig (with option -p) +- regex = r'\s+(lib%s\.[^\s]+)\s+\(%s' +- regex = os.fsencode(regex % (re.escape(name), abi_type)) +- try: +- with subprocess.Popen(['/sbin/ldconfig', '-p'], +- stdin=subprocess.DEVNULL, +- stderr=subprocess.DEVNULL, +- stdout=subprocess.PIPE, +- env={'LC_ALL': 'C', 'LANG': 'C'}) as p: +- res = re.search(regex, p.stdout.read()) +- if res: +- return os.fsdecode(res.group(1)) +- except OSError: +- pass ++ return None + + def _findLib_ld(name): + # See issue #9998 for why this is needed +-- +2.15.0 + diff --git a/pkgs/development/interpreters/python/default.nix b/pkgs/development/interpreters/python/default.nix index 2ed5ed951d3..a8db9bc9257 100644 --- a/pkgs/development/interpreters/python/default.nix +++ b/pkgs/development/interpreters/python/default.nix @@ -28,6 +28,7 @@ with pkgs; isPy37 = pythonVersion == "3.7"; isPy38 = pythonVersion == "3.8"; isPy39 = pythonVersion == "3.9"; + isPy310 = pythonVersion == "3.10"; isPy2 = lib.strings.substring 0 1 pythonVersion == "2"; isPy3 = lib.strings.substring 0 1 pythonVersion == "3"; isPy3k = isPy3; @@ -94,10 +95,10 @@ in { sourceVersion = { major = "3"; minor = "8"; - patch = "5"; + patch = "6"; suffix = ""; }; - sha256 = "1c43dbv9lvlp3ynqmgdi4rh8q94swanhqarqrdx62zmigpakw073"; + sha256 = "qeC3nSeqBW65zOjWOkJ7X5urFGXe4/lC3P2yWoL0q4o="; inherit (darwin) configd; inherit passthruFun; }; @@ -115,6 +116,19 @@ in { inherit passthruFun; }; + python310 = callPackage ./cpython { + self = python310; + sourceVersion = { + major = "3"; + minor = "10"; + patch = "0"; + suffix = "a1"; + }; + sha256 = "0q59a99w1yad808mx4w6l0j7bk7dbd2kakngbk0w1h9z4dhr8wyv"; + inherit (darwin) configd; + inherit passthruFun; + }; + # Minimal versions of Python (built without optional dependencies) python3Minimal = (python38.override { self = python3Minimal; diff --git a/pkgs/development/interpreters/python/update-python-libraries/update-python-libraries.py b/pkgs/development/interpreters/python/update-python-libraries/update-python-libraries.py index f822cea64da..9054195ab7e 100755 --- a/pkgs/development/interpreters/python/update-python-libraries/update-python-libraries.py +++ b/pkgs/development/interpreters/python/update-python-libraries/update-python-libraries.py @@ -193,9 +193,12 @@ def _get_latest_version_github(package, extension, current_version, target): matches = re.findall(r"^([^0-9]*)", string) return next(iter(matches), "") + # when invoked as an updateScript, UPDATE_NIX_ATTR_PATH will be set + # this allows us to work with packages which live outside of python-modules + attr_path = os.environ.get("UPDATE_NIX_ATTR_PATH", f"python3Packages.{package}") try: homepage = subprocess.check_output( - ["nix", "eval", "-f", f"{NIXPGKS_ROOT}/default.nix", "--raw", f"python3Packages.{package}.src.meta.homepage"])\ + ["nix", "eval", "-f", f"{NIXPGKS_ROOT}/default.nix", "--raw", f"{attr_path}.src.meta.homepage"])\ .decode('utf-8') except Exception as e: raise ValueError(f"Unable to determine homepage: {e}") diff --git a/pkgs/development/interpreters/racket/minimal.nix b/pkgs/development/interpreters/racket/minimal.nix index 02aed6e8929..abff21c798a 100644 --- a/pkgs/development/interpreters/racket/minimal.nix +++ b/pkgs/development/interpreters/racket/minimal.nix @@ -9,7 +9,7 @@ racket.overrideAttrs (oldAttrs: rec { }; meta = oldAttrs.meta // { - description = "Racket without bundled packages, such as Dr. Racket."; + description = "Racket without bundled packages, such as Dr. Racket"; longDescription = ''The essential package racket-libs is included, as well as libraries that live in collections. In particular, raco and the pkg library are still bundled. diff --git a/pkgs/development/interpreters/rakudo/default.nix b/pkgs/development/interpreters/rakudo/default.nix index 94f01cd51df..f06c51fce0d 100644 --- a/pkgs/development/interpreters/rakudo/default.nix +++ b/pkgs/development/interpreters/rakudo/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "rakudo"; - version = "2020.09"; + version = "2020.10"; src = fetchurl { url = "https://www.rakudo.org/dl/rakudo/rakudo-${version}.tar.gz"; - sha256 = "1izfwns7viwy0x9hnhx13j9w5qa97qpyxqk9cd8iax7i68z057m7"; + sha256 = "0wvsinmpz8icd0409f8rg93mqdb5ml76m0vb4r26ngz237ph69dn"; }; buildInputs = [ icu zlib gmp perl ]; diff --git a/pkgs/development/interpreters/rakudo/moarvm.nix b/pkgs/development/interpreters/rakudo/moarvm.nix index f03043369e9..a873bfd28f5 100644 --- a/pkgs/development/interpreters/rakudo/moarvm.nix +++ b/pkgs/development/interpreters/rakudo/moarvm.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { pname = "moarvm"; - version = "2020.09"; + version = "2020.10"; src = fetchurl { url = "https://www.moarvm.org/releases/MoarVM-${version}.tar.gz"; - sha256 = "08prlvnyqwnzb7mwaqvgv662v78xgwsyy12cpyim6gc4z0i1kcj8"; + sha256 = "1i7jjjwv4av3rsfgbqb213fhb9ns25jfm19nzn7kki0n7w486y33"; }; buildInputs = [ perl ] ++ stdenv.lib.optionals stdenv.isDarwin [ CoreServices ApplicationServices ]; diff --git a/pkgs/development/interpreters/rakudo/nqp.nix b/pkgs/development/interpreters/rakudo/nqp.nix index 14d5f563fcd..e200b59b61c 100644 --- a/pkgs/development/interpreters/rakudo/nqp.nix +++ b/pkgs/development/interpreters/rakudo/nqp.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "nqp"; - version = "2020.09"; + version = "2020.10"; src = fetchurl { url = "https://github.com/raku/nqp/releases/download/${version}/nqp-${version}.tar.gz"; - sha256 = "09kiy7r732yrh3nzdzdq9yki0jx2hamyqvrbahk4mlxmb6cl9qmh"; + sha256 = "0nb0vdycz2wrd5yspvps2wy7a21066csr18v786085qim347830h"; }; buildInputs = [ perl ]; diff --git a/pkgs/development/interpreters/ruby/default.nix b/pkgs/development/interpreters/ruby/default.nix index 02d0f02c349..7b36b04d114 100644 --- a/pkgs/development/interpreters/ruby/default.nix +++ b/pkgs/development/interpreters/ruby/default.nix @@ -125,6 +125,10 @@ let "--with-out-ext=tk" # on yosemite, "generating encdb.h" will hang for a very long time without this flag "--with-setjmp-type=setjmp" + # silence linker warnings after upgrading darwin.cctools to 949.0.1, + # which ruby treats as problem with LDFLAGS + # https://github.com/NixOS/nixpkgs/issues/101330 + "LDFLAGS=-Wl,-w" ] ++ op (stdenv.hostPlatform != stdenv.buildPlatform) "--with-baseruby=${buildRuby}"; diff --git a/pkgs/development/java-modules/maven-minimal.nix b/pkgs/development/java-modules/maven-minimal.nix index c1fab1e9bc9..52edcd2104f 100644 --- a/pkgs/development/java-modules/maven-minimal.nix +++ b/pkgs/development/java-modules/maven-minimal.nix @@ -83,6 +83,7 @@ in { apache_10 apache_11 apache_13 + apache_14 backportUtilConcurrent_3_1 commonsParent_22 doxia_1_0_alpha7 @@ -98,9 +99,11 @@ in { mavenParent_21 mavenParent_22 mavenParent_23 + mavenParent_24 mavenPlugins_22 mavenPlugins_23 mavenPlugins_24 + mavenPlugins_25 mavenPluginTools_3_1 mavenReporting_2_0_6 mavenReporting_2_0_9 @@ -121,7 +124,9 @@ in { plexus_3_3_1 plexusCipher_1_4 plexusCompiler_2_2 + plexusCompiler_2_4 plexusCompilers_2_2 + plexusCompilers_2_4 plexusComponents_1_1_7 plexusComponents_1_1_14 plexusComponents_1_1_15 diff --git a/pkgs/development/java-modules/maven/compiler-plugin.nix b/pkgs/development/java-modules/maven/compiler-plugin.nix new file mode 100644 index 00000000000..b35b5660e80 --- /dev/null +++ b/pkgs/development/java-modules/maven/compiler-plugin.nix @@ -0,0 +1,14 @@ +{ fetchMaven }: + +{ + mavenCompiler_3_2 = map (obj: fetchMaven { + version = "3.2"; + artifactId = "maven-compiler-plugin"; + groupId = "org.apache.maven.plugins"; + sha512 = obj.sha512; + type = obj.type; + }) [ + { type = "jar"; sha512 = "15lncacbgsbkp6m4fb1hv41nxn0w8lxgpjcpghw3znbh909d2y5h70q2nw3fyhd7kqsjwpvwpilkgyd5b35vi1smj5hhapmakqjk28r"; } + { type = "pom"; sha512 = "0a9pnb9rscsc32gpjr257k1pnydpskcs4jx8bs88vikxbdgc5sppllmqhi7k00i19azy2vjj59b3m9dcklcspmy9caxv2l7vjyr2lm0"; } + ]; +} diff --git a/pkgs/development/java-modules/plexus/compiler-api.nix b/pkgs/development/java-modules/plexus/compiler-api.nix index a1c6556a769..f778e7cf29a 100644 --- a/pkgs/development/java-modules/plexus/compiler-api.nix +++ b/pkgs/development/java-modules/plexus/compiler-api.nix @@ -11,4 +11,15 @@ { type = "jar"; sha512 = "3by7icjfiymp7g2v1ci5dqwml6ibzh2njyg2w43kvaz3ydcxkzmfg5s97wsdqjsii7vdgqyhr16ydsn6mr90wbjvsi6wasaq1rqa812"; } { type = "pom"; sha512 = "0pdl78hp921lgkfya54wl8hxgm1c5474j1p921q5ix1knx1rlr4klpjwx212wy2m7b6bxq0bkf8n66mqjr72rh2rh308qij00ymrga8"; } ]; + + plexusCompilerApi_2_4 = map (obj: fetchMaven { + version = "2.4"; + artifactId = "plexus-compiler-api"; + groupId = "org.codehaus.plexus"; + sha512 = obj.sha512; + type = obj.type; + }) [ + { type = "jar"; sha512 = "1xm0lv43dbg33prr0vc7g3vv0r07qc7kxjjbpqkxyh60vryd9q2wj3r656z4x8fwwqjrpr9xb4lmn4nm0c1cn85xzhfpxiq13rnl8cr"; } + { type = "pom"; sha512 = "0mqghnfagrmws585bvdwbpf1c719jvbmhwb318vw661cjfzj1b55nvjxza49bx5y38kwnwk0cqk9f26pv323ng09iifyjxgzafqq479"; } + ]; } diff --git a/pkgs/development/java-modules/plexus/compiler-javac.nix b/pkgs/development/java-modules/plexus/compiler-javac.nix index d86240b6d45..0e73caf5872 100644 --- a/pkgs/development/java-modules/plexus/compiler-javac.nix +++ b/pkgs/development/java-modules/plexus/compiler-javac.nix @@ -11,4 +11,15 @@ { type = "jar"; sha512 = "12xsiaqd1q6mmmkcsxf4nr4wdjl8fa1nwz32yqwrrbj9cgakph0368cnk1apjzngsmnl6bws87nlxcz64sg0rb7i2vdzggplj0a41br"; } { type = "pom"; sha512 = "1fv2ij4h9xmzv3f5mvs0ilhkw7khkw5v8n1d97a2canfn254fipz7pd9nkmkqzjvy3cqwiczyh2nzibvcii624p8ggwl4s3yjw92jx4"; } ]; + + plexusCompilerJavac_2_4 = map (obj: fetchMaven { + version = "2.4"; + artifactId = "plexus-compiler-javac"; + groupId = "org.codehaus.plexus"; + sha512 = obj.sha512; + type = obj.type; + }) [ + { type = "jar"; sha512 = "272iaf7mgmhjssj0k4a9r8rzb3c8pskb4aqypcdvj217l8hbih6rsqhh9nd2xmwrwa1ifvc336b8ihz6f419lj74gp4p1za6mp0nps3"; } + { type = "pom"; sha512 = "1g16i5w610nsh9h0yyhw25fpr2lx562c4v8y17lw53imi4rhm0m709ysrbrh71rhv6f8g4i5d6wgps77jmdb5kn2h5k1n4n644wrd12"; } + ]; } diff --git a/pkgs/development/java-modules/plexus/compiler-manager.nix b/pkgs/development/java-modules/plexus/compiler-manager.nix index 3f27981b154..c639780ca0b 100644 --- a/pkgs/development/java-modules/plexus/compiler-manager.nix +++ b/pkgs/development/java-modules/plexus/compiler-manager.nix @@ -11,4 +11,15 @@ { type = "jar"; sha512 = "1r1sdj784x4zcnkaz840vsz36jn1p2j98c21nia56kcdl1njydjn714bsmdy816l6sdinkz4s196mm3hshmxhq8mkmf16wgxx8jnq94"; } { type = "pom"; sha512 = "3cpfnbgil6g0bgq0cjbq2ysfjdpl05fh72d9l9cnwbilcsaxcmzn1hgmmkvam2ih222nl82dy7n5020is3y05kiv0i4n4lcs5m0ia48"; } ]; + + plexusCompilerManager_2_4 = map (obj: fetchMaven { + version = "2.4"; + artifactId = "plexus-compiler-manager"; + groupId = "org.codehaus.plexus"; + sha512 = obj.sha512; + type = obj.type; + }) [ + { type = "jar"; sha512 = "2al10188nwrdmi9zk3bid4ijjfsa8ymh6m9hin5jsja7hx7anbvs3i2y7kall56h4qn7j1rj73f8499x3i2k6x53kszmksvd2a1pkd4"; } + { type = "pom"; sha512 = "2bb2yrvjxci7wx7ira5cnnzdmlzdx4fk59fddpnmvdgh06dmg7fbnjlyx73pn6b13ajjrjl7rgj26mqs2hid3c0p3ni6x1qsg9w3ip0"; } + ]; } diff --git a/pkgs/development/java-modules/poms.nix b/pkgs/development/java-modules/poms.nix index d93edb7aa4f..4e314605b79 100644 --- a/pkgs/development/java-modules/poms.nix +++ b/pkgs/development/java-modules/poms.nix @@ -105,6 +105,14 @@ type = "pom"; }; + apache_14 = fetchMaven { + version = "14"; + artifactId = "apache"; + groupId = "org.apache"; + sha512 = "08y5k9lny2z171c78l4j70miylj2xy8w48amqwcghy3p9pc1p19qx6146s4mxc2z4wx4z9gpi9agham46m5hqa6k6v2s16v80phi7xi"; + type = "pom"; + }; + asmParent_4_0 = fetchMaven { version = "4.0"; artifactId = "asm-parent"; @@ -345,6 +353,14 @@ type = "pom"; }; + mavenParent_24 = fetchMaven { + version = "24"; + artifactId = "maven-parent"; + groupId = "org.apache.maven"; + sha512 = "0w1v36qx53xv5m8kag6wakzy7rjrp4gzfp7zfmrp5kw13ik6k42fnfkknslqc2g2c5dyxra2vpbvz1z9bcqslyaljd4r1rj3qbh5vl7"; + type = "pom"; + }; + mavenPlugins_22 = fetchMaven { version = "22"; artifactId = "maven-plugins"; @@ -369,6 +385,14 @@ type = "pom"; }; + mavenPlugins_25 = fetchMaven { + version = "25"; + artifactId = "maven-plugins"; + groupId = "org.apache.maven.plugins"; + sha512 = "38zx1im9qnblr5p9r4ln91d2280x48n9a11j4476skrgh97l3iqxs5ggqc22wis7r53g4j8ya4dvzqhxx6gymfbz3cn6a6hcmdqbng5"; + type = "pom"; + }; + mavenPluginTools_3_1 = fetchMaven { version = "3.1"; artifactId = "maven-plugin-tools"; @@ -593,6 +617,14 @@ type = "pom"; }; + plexusCompiler_2_4 = fetchMaven { + version = "2.4"; + artifactId = "plexus-compiler"; + groupId = "org.codehaus.plexus"; + sha512 = "0v89a5kbgyphmvgmdf6kb7zi4fvq16l435cxsp7grc5jy4ir9d0dv5g7xwhsk9ajp1lcy9kp4l4bk2h93g4kvj3bhk548wv284y36bf"; + type = "pom"; + }; + plexusCompilers_2_2 = fetchMaven { version = "2.2"; artifactId = "plexus-compilers"; @@ -601,6 +633,14 @@ type = "pom"; }; + plexusCompilers_2_4 = fetchMaven { + version = "2.4"; + artifactId = "plexus-compilers"; + groupId = "org.codehaus.plexus"; + sha512 = "1zalxaqycaykdn6q6pnxki6yvlpaf5qap1903hcylhbi1gcwmpqys39xg4pah9giy9iis350w2dmsab2prib9lihz4s9z6s6adqcss2"; + type = "pom"; + }; + plexusComponents_1_1_4 = fetchMaven { version = "1.1.4"; artifactId = "plexus-components"; diff --git a/pkgs/development/libraries/CGAL/default.nix b/pkgs/development/libraries/CGAL/default.nix index 97ddab1a32e..6824cb7f183 100644 --- a/pkgs/development/libraries/CGAL/default.nix +++ b/pkgs/development/libraries/CGAL/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "cgal"; - version = "5.0.3"; + version = "5.1"; src = fetchFromGitHub { owner = "CGAL"; repo = "releases"; rev = "CGAL-${version}"; - sha256 = "1p22dwrzzvbmrfjr6m3dac55nq8pp0b9afp3vz6239yp3gf2fcws"; + sha256 = "0rcv86hn5aqna7vr9nfk4np778qjr7l3742v58w6qw0z4y6l1km0"; }; # note: optional component libCGAL_ImageIO would need zlib and opengl; diff --git a/pkgs/development/libraries/ace/default.nix b/pkgs/development/libraries/ace/default.nix index 372cfbeffff..b2a31edd0b6 100644 --- a/pkgs/development/libraries/ace/default.nix +++ b/pkgs/development/libraries/ace/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "ace"; - version = "6.5.7"; + version = "6.5.10"; src = fetchurl { url = "http://download.dre.vanderbilt.edu/previous_versions/ACE-${version}.tar.bz2"; - sha256 = "0hvd7y3hs8r3r7qbllfaqrva3jrx5razcnwlws822k66v4r10cbx"; + sha256 = "1qnq63r9cnaaqb5yrbb7apr7kjl6x31wfclizplri3lj4rwl7plh"; }; enableParallelBuilding = true; @@ -14,6 +14,10 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkgconfig libtool ]; buildInputs = [ perl ]; + NIX_CFLAGS_COMPILE = [ + "-Wno-error=format-security" + ]; + patchPhase = ''substituteInPlace ./MPC/prj_install.pl \ --replace /usr/bin/perl "${perl}/bin/perl"''; diff --git a/pkgs/development/libraries/agda/agda-categories/default.nix b/pkgs/development/libraries/agda/agda-categories/default.nix index 13ca6c52d71..f2215b9b984 100644 --- a/pkgs/development/libraries/agda/agda-categories/default.nix +++ b/pkgs/development/libraries/agda/agda-categories/default.nix @@ -1,14 +1,14 @@ { lib, mkDerivation, fetchFromGitHub, standard-library }: mkDerivation rec { - version = "0.1.3.1"; + version = "0.1.4"; pname = "agda-categories"; src = fetchFromGitHub { owner = "agda"; repo = "agda-categories"; rev = "v${version}"; - sha256 = "08mc20qaz9vp5rhi60rh8wvjkg5aby3bgwwdhfnxha1663qf1q24"; + sha256 = "0n6y9xarqhj95i4h56klx10gy0fyckxbfwgiissfknpfq6l0m7r6"; }; buildInputs = [ standard-library ]; diff --git a/pkgs/development/libraries/agda/functional-linear-algebra/default.nix b/pkgs/development/libraries/agda/functional-linear-algebra/default.nix new file mode 100644 index 00000000000..dbcdaac532e --- /dev/null +++ b/pkgs/development/libraries/agda/functional-linear-algebra/default.nix @@ -0,0 +1,26 @@ +{ fetchFromGitHub, lib, stdenv, mkDerivation, standard-library }: + +mkDerivation rec { + version = "0.1"; + pname = "functional-linear-algebra"; + + buildInputs = [ standard-library ]; + + src = fetchFromGitHub { + repo = "functional-linear-algebra"; + owner = "ryanorendorff"; + rev = "v${version}"; + sha256 = "09ri3jmgp9jjwi1mzv4c3w6rvcmyx6spa2qxpwlcn0f4bmfva6wm"; + }; + + meta = with stdenv.lib; { + homepage = "https://github.com/ryanorendorff/functional-linear-algebra"; + description = '' + Formalizing linear algebra in Agda by representing matrices as functions + from one vector space to another. + ''; + license = licenses.bsd3; + platforms = platforms.unix; + maintainers = with maintainers; [ ryanorendorff ]; + }; +} diff --git a/pkgs/development/libraries/agda/generic/default.nix b/pkgs/development/libraries/agda/generic/default.nix index 1287e08bda1..08a1d8e12e0 100644 --- a/pkgs/development/libraries/agda/generic/default.nix +++ b/pkgs/development/libraries/agda/generic/default.nix @@ -2,13 +2,13 @@ mkDerivation rec { pname = "generic"; - version = "0.1"; + version = "0.1.0.1"; src = fetchFromGitHub { repo = "Generic"; owner = "effectfully"; rev = "v${version}"; - sha256 = "121121rg3daaqp91845fbyws6g28hyj1ywmh12n54r3nicb35g5q"; + sha256 = "07l44yzx1jly20kmkmkjk8q493bn6x7i3xxpz6mhadkqlxyhmc8s"; }; buildInputs = [ @@ -17,7 +17,7 @@ mkDerivation rec { preBuild = '' echo "module Everything where" > Everything.agda - find src -name '*.agda' | sed -e 's/src\///;s/\//./g;s/\.agda$//;s/^/import /' >> Everything.agda + find src -name '*.agda' | sed -e 's/src\///;s/\//./g;s/\.agda$//;s/^/import /' >> Everything.agda ''; meta = with lib; { diff --git a/pkgs/development/libraries/agda/standard-library/default.nix b/pkgs/development/libraries/agda/standard-library/default.nix index 4bff585ac3a..e43e1bad3b6 100644 --- a/pkgs/development/libraries/agda/standard-library/default.nix +++ b/pkgs/development/libraries/agda/standard-library/default.nix @@ -2,13 +2,13 @@ mkDerivation rec { pname = "standard-library"; - version = "1.3"; + version = "1.4"; src = fetchFromGitHub { repo = "agda-stdlib"; owner = "agda"; rev = "v${version}"; - sha256 = "18kl20z3bjfgx5m3nvrdj5776qmpi7jl2p12pqybsls2lf86m0d5"; + sha256 = "1asjbisb7pfkgzqy7gf9b23z63bba8l8p1wqfd6ff5ddgqwj3dhp"; }; nativeBuildInputs = [ (ghcWithPackages (self : [ self.filemanip ])) ]; diff --git a/pkgs/development/libraries/amdvlk/default.nix b/pkgs/development/libraries/amdvlk/default.nix index c4a0a460f89..3e8c9a24a6e 100644 --- a/pkgs/development/libraries/amdvlk/default.nix +++ b/pkgs/development/libraries/amdvlk/default.nix @@ -21,13 +21,13 @@ let in stdenv.mkDerivation rec { pname = "amdvlk"; - version = "2020.Q3.6"; + version = "2020.Q4.1"; src = fetchRepoProject { name = "${pname}-src"; manifest = "https://github.com/GPUOpen-Drivers/AMDVLK.git"; rev = "refs/tags/v-${version}"; - sha256 = "05bvxxgaz94y85g1sq0jzjxd4j8vgdfan04q2fzmfcw3h6p7syjy"; + sha256 = "UxUsXngsMbLNSmg0a7gqCqw30ckZ8IlDrSZMMnKHlh4="; }; buildInputs = [ diff --git a/pkgs/development/libraries/armadillo/default.nix b/pkgs/development/libraries/armadillo/default.nix index a4d359b985b..169777f2b42 100644 --- a/pkgs/development/libraries/armadillo/default.nix +++ b/pkgs/development/libraries/armadillo/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "armadillo"; - version = "9.900.3"; + version = "10.1.0"; src = fetchurl { url = "mirror://sourceforge/arma/armadillo-${version}.tar.xz"; - sha256 = "02pwhf3y2qq50dswjvfcijaw938d1zi1hxr17msv2x1ahlvff5fn"; + sha256 = "15c3amyrk496v0s6r2pn8dw4v82f4ld347nbv5qdzd6injsg3qvj"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/arrow-cpp/default.nix b/pkgs/development/libraries/arrow-cpp/default.nix index 695cd136857..1d9a528b4c6 100644 --- a/pkgs/development/libraries/arrow-cpp/default.nix +++ b/pkgs/development/libraries/arrow-cpp/default.nix @@ -7,25 +7,25 @@ let arrow-testing = fetchFromGitHub { owner = "apache"; repo = "arrow-testing"; - rev = "f552c4dcd2ae3d14048abd20919748cce5276ade"; - sha256 = "1smaidk5k2q6xdav7qp74ak34vvwv5qyfqw0szi573awsrsrahr8"; + rev = "860376d4e586a3ac34ec93089889da624ead6c2a"; + sha256 = "16k3lz4ji4y3qcjhr765q14jwwlac8iqscwndwd8ll3zr0vy69b0"; }; parquet-testing = fetchFromGitHub { owner = "apache"; repo = "parquet-testing"; - rev = "bcd9ebcf9204a346df47204fe21b85c8d0498816"; - sha256 = "0m16pqzbvxiaradq088q5ai6fwnz9srbap996397znwppvva479b"; + rev = "d914f9d289488c7db1759d7a88a4a1b8f062c7dd"; + sha256 = "0xj3ynck2wv6l70xnmvs13bz1jycqjrl5k4lwhhwgag338048als"; }; in stdenv.mkDerivation rec { pname = "arrow-cpp"; - version = "1.0.1"; + version = "2.0.0"; src = fetchurl { url = "mirror://apache/arrow/arrow-${version}/apache-arrow-${version}.tar.gz"; - sha256 = "0p67dni8dwqbwq96gfdq3pyk799id6dgdl9h7cpp9icsjsmad70l"; + sha256 = "1ghzqw0rx4rxa2d7i76y3szisv0bd9cl7vzadbc41cvvhk6440xy"; }; sourceRoot = "apache-arrow-${version}/cpp"; @@ -43,26 +43,13 @@ in stdenv.mkDerivation rec { # ./cpp/cmake_modules/ThirdpartyToolchain.cmake # ./cpp/thirdparty/versions.txt url = - "https://github.com/microsoft/mimalloc/archive/v1.6.3.tar.gz"; - sha256 = "0pia8b4acv1w8qzcpc9i1a2fasnn3rmp996k0l87p2di0lbls0w5"; + "https://github.com/microsoft/mimalloc/archive/v1.6.4.tar.gz"; + sha256 = "1b8av0974q70alcmaw5cwzbn6n9blnpmj721ik1qwmbbwwd6nqgs"; }; patches = [ # patch to fix python-test ./darwin.patch - # Properly exported static targets. Remove at the next version bump. - (fetchpatch { - url = "https://github.com/apache/arrow/commit/b040600b39a4f803b704934252665f9440dd1276.patch"; - sha256 = "1mvw29ybcsz77zprmsk41blxmrj8ywayg7ghf6xkkf98907ws8m8"; - includes = [ "*.cmake" ]; - stripLen = 1; - }) - (fetchpatch { - url = "https://github.com/apache/arrow/commit/81d3f2657b17436d6d5a6af9aaf6f36c3f5e4ac9.patch"; - sha256 = "18fmzr5f79hvx2qpyfgvvl98p4zgzfxrmrd1d2basp0w0da1ciqs"; - includes = [ "*CMakeLists.txt" "*.cmake" "*.cmake.in" ]; - stripLen = 1; - }) ]; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/aspell/dictionaries.nix b/pkgs/development/libraries/aspell/dictionaries.nix index 32405d6a525..bc2a189a887 100644 --- a/pkgs/development/libraries/aspell/dictionaries.nix +++ b/pkgs/development/libraries/aspell/dictionaries.nix @@ -132,15 +132,15 @@ let # drop comments aspell-affix() { words-only \ - | grep -v '#' \ + | grep -a -v '#' \ | aspell-create "$@" } # Hack: drop comments and words with affixes aspell-plain() { words-only \ - | grep -v '#' \ - | grep -v '/' \ + | grep -a -v '#' \ + | grep -a -v '/' \ | aspell-create "$@" } diff --git a/pkgs/development/libraries/at-spi2-core/default.nix b/pkgs/development/libraries/at-spi2-core/default.nix index 32667bf66e0..2c959434f01 100644 --- a/pkgs/development/libraries/at-spi2-core/default.nix +++ b/pkgs/development/libraries/at-spi2-core/default.nix @@ -20,11 +20,11 @@ stdenv.mkDerivation rec { pname = "at-spi2-core"; - version = "2.36.0"; + version = "2.36.1"; src = fetchurl { url = "mirror://gnome/sources/${pname}/${stdenv.lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "0nn0lnf07ayysq8c8irmvc91c2dszn04m5qs6jy60g3y1bg5gnl8"; + sha256 = "0m3crrdbc9vdn9dr4lssdwrjmm8z5wxs2qhhnbkh1w5vkn87nhcp"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/attica/default.nix b/pkgs/development/libraries/attica/default.nix deleted file mode 100644 index d883100fd3c..00000000000 --- a/pkgs/development/libraries/attica/default.nix +++ /dev/null @@ -1,20 +0,0 @@ -{ stdenv, fetchurl, cmake, qt4 }: - -stdenv.mkDerivation rec { - name = "attica-0.4.2"; - - src = fetchurl { - url = "mirror://kde/stable/attica/${name}.tar.bz2"; - sha256 = "1y74gsyzi70dfr9d1f1b08k130rm3jaibsppg8dv5h3211vm771v"; - }; - - buildInputs = [ qt4 ]; - nativeBuildInputs = [ cmake ]; - - meta = with stdenv.lib; { - description = "Library to access Open Collaboration Service providers"; - license = "LGPL"; - maintainers = [ maintainers.sander maintainers.phreedom ]; - inherit (qt4.meta) platforms; - }; -} diff --git a/pkgs/development/libraries/ayatana-ido/default.nix b/pkgs/development/libraries/ayatana-ido/default.nix index 66ead87daa0..7b24f08822b 100644 --- a/pkgs/development/libraries/ayatana-ido/default.nix +++ b/pkgs/development/libraries/ayatana-ido/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub -, pkgconfig, autoreconfHook +, pkg-config, autoreconfHook , gtk3, gobject-introspection, gtk-doc, vala }: @@ -14,16 +14,16 @@ stdenv.mkDerivation rec { sha256 = "1jmdvvgrgicpnpnygc24qcisqb9y026541gb6lw6fwapvc9aj73p"; }; - nativeBuildInputs = [ pkgconfig autoreconfHook gtk-doc vala ]; + nativeBuildInputs = [ pkg-config autoreconfHook gtk-doc vala gobject-introspection ]; - buildInputs = [ gtk3 gobject-introspection ]; + buildInputs = [ gtk3 ]; meta = with stdenv.lib; { description = "Ayatana Display Indicator Objects"; homepage = "https://github.com/AyatanaIndicators/ayatana-ido"; changelog = "https://github.com/AyatanaIndicators/ayatana-ido/blob/${version}/ChangeLog"; - license = [ licenses.gpl3 licenses.lgpl21 ]; + license = [ licenses.lgpl3Plus licenses.lgpl21Plus ]; maintainers = [ maintainers.nickhu ]; - platforms = platforms.x86_64; + platforms = platforms.linux; }; } diff --git a/pkgs/development/libraries/babl/default.nix b/pkgs/development/libraries/babl/default.nix index ac622fb290e..9bb6e9e1c5e 100644 --- a/pkgs/development/libraries/babl/default.nix +++ b/pkgs/development/libraries/babl/default.nix @@ -33,9 +33,9 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Image pixel format conversion library"; - homepage = "http://gegl.org/babl/"; - license = licenses.gpl3; - maintainers = with stdenv.lib.maintainers; [ jtojnar ]; + homepage = "https://gegl.org/babl/"; + license = licenses.lgpl3Plus; + maintainers = with maintainers; [ jtojnar ]; platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/belcard/default.nix b/pkgs/development/libraries/belcard/default.nix index 11de0488915..34b0560f3f4 100644 --- a/pkgs/development/libraries/belcard/default.nix +++ b/pkgs/development/libraries/belcard/default.nix @@ -7,7 +7,7 @@ stdenv.mkDerivation rec { pname = "belcard"; - version = "4.3.1"; + version = "4.4.0"; src = fetchFromGitLab { domain = "gitlab.linphone.org"; @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { group = "BC"; repo = pname; rev = version; - sha256 = "1w6rbp53cwxr00clp957458x27cgc2y9ylwa5mp812qva7zadmfw"; + sha256 = "16x2xp8d0a115132zhy1kpxkyj86ia7vrsnpjdg78fnbvmvysc8m"; }; buildInputs = [ bctoolbox belr ]; diff --git a/pkgs/development/libraries/belr/default.nix b/pkgs/development/libraries/belr/default.nix index 90067e493a1..546949d9f21 100644 --- a/pkgs/development/libraries/belr/default.nix +++ b/pkgs/development/libraries/belr/default.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DENABLE_STATIC=NO" ]; meta = with stdenv.lib; { - description = "Belr is Belledonne Communications' language recognition library"; + description = "Belledonne Communications' language recognition library"; homepage = "https://gitlab.linphone.org/BC/public/belr"; license = licenses.gpl3; platforms = platforms.all; diff --git a/pkgs/development/libraries/boost/1.73.nix b/pkgs/development/libraries/boost/1.73.nix new file mode 100644 index 00000000000..99a5486f197 --- /dev/null +++ b/pkgs/development/libraries/boost/1.73.nix @@ -0,0 +1,16 @@ +{ stdenv, callPackage, fetchurl, fetchpatch, ... } @ args: + +callPackage ./generic.nix (args // rec { + version = "1.73.0"; + + src = fetchurl { + #url = "mirror://sourceforge/boost/boost_1_73_0.tar.bz2"; + urls = [ + "mirror://sourceforge/boost/boost_1_73_0.tar.bz2" + "https://dl.bintray.com/boostorg/release/1.73.0/source/boost_1_73_0.tar.bz2" + ]; + # SHA256 from http://www.boost.org/users/history/version_1_73_0.html + sha256 = "4eb3b8d442b426dc35346235c8733b5ae35ba431690e38c6a8263dce9fcbb402"; + }; +}) + diff --git a/pkgs/development/libraries/boost/1.74.nix b/pkgs/development/libraries/boost/1.74.nix new file mode 100644 index 00000000000..35b4013dcb3 --- /dev/null +++ b/pkgs/development/libraries/boost/1.74.nix @@ -0,0 +1,15 @@ +{ stdenv, callPackage, fetchurl, fetchpatch, ... } @ args: + +callPackage ./generic.nix (args // rec { + version = "1.74.0"; + + src = fetchurl { + urls = [ + "mirror://sourceforge/boost/boost_1_74_0.tar.bz2" + "https://dl.bintray.com/boostorg/release/1.74.0/source/boost_1_74_0.tar.bz2" + ]; + # SHA256 from http://www.boost.org/users/history/version_1_74_0.html + sha256 = "83bfc1507731a0906e387fc28b7ef5417d591429e51e788417fe9ff025e116b1"; + }; +}) + diff --git a/pkgs/development/libraries/boost/cmake-paths-173.patch b/pkgs/development/libraries/boost/cmake-paths-173.patch new file mode 100644 index 00000000000..7b88da0e42a --- /dev/null +++ b/pkgs/development/libraries/boost/cmake-paths-173.patch @@ -0,0 +1,22 @@ +diff --git a/tools/boost_install/boost-install.jam b/tools/boost_install/boost-install.jam +index 4238f921e..8fc1ea269 100644 +--- a/tools/boost_install/boost-install.jam ++++ b/tools/boost_install/boost-install.jam +@@ -649,7 +649,7 @@ rule generate-cmake-config- ( target : sources * : properties * ) + "" + "# Compute the include and library directories relative to this file." + "" +- "get_filename_component(_BOOST_CMAKEDIR \"${CMAKE_CURRENT_LIST_DIR}/../\" REALPATH)" ++ "get_filename_component(_BOOST_REAL_CMAKEDIR \"${CMAKE_CURRENT_LIST_DIR}/../\" REALPATH)" + : true ; + + if [ path.is-rooted $(cmakedir) ] +@@ -668,6 +668,8 @@ rule generate-cmake-config- ( target : sources * : properties * ) + " unset(_BOOST_CMAKEDIR_ORIGINAL)" + "endif()" + "" ++ "# Assume that the installer actually did know where the libs were to be installed" ++ "get_filename_component(_BOOST_CMAKEDIR \"$(cmakedir-native)\" REALPATH)" + : true ; + } + diff --git a/pkgs/development/libraries/boost/generic.nix b/pkgs/development/libraries/boost/generic.nix index 6d1c20f323d..8295be238fc 100644 --- a/pkgs/development/libraries/boost/generic.nix +++ b/pkgs/development/libraries/boost/generic.nix @@ -113,7 +113,8 @@ stdenv.mkDerivation { if version == "1.55.0" then ./darwin-1.55-no-system-python.patch else ./darwin-no-system-python.patch) - ++ optional (versionAtLeast version "1.70") ./cmake-paths.patch; + ++ optional (and (versionAtLeast version "1.70") (!versionAtLeast version "1.73")) ./cmake-paths.patch + ++ optional (versionAtLeast version "1.73") ./cmake-paths-173.patch; meta = { homepage = "http://boost.org/"; diff --git a/pkgs/development/libraries/boxfort/default.nix b/pkgs/development/libraries/boxfort/default.nix index fb6e735c46e..9a4e2c23356 100644 --- a/pkgs/development/libraries/boxfort/default.nix +++ b/pkgs/development/libraries/boxfort/default.nix @@ -1,36 +1,25 @@ -{ stdenv, fetchFromGitHub, cmake, pkg-config, gettext, libcsptr, dyncall -, nanomsg, python37Packages }: +{ stdenv, fetchFromGitHub, meson, ninja, python37Packages }: stdenv.mkDerivation rec { - version = "unstable-2019-09-19"; + version = "unstable-2019-10-09"; pname = "boxfort"; src = fetchFromGitHub { owner = "Snaipe"; repo = "BoxFort"; - rev = "926bd4ce968592dbbba97ec1bb9aeca3edf29b0d"; - sha256 = "0mzy4f8qij6ckn5578y3l4rni2470pdkjy5xww7ak99l1kh3p3v6"; + rev = "356f047db08b7344ea7980576b705e65b9fc8772"; + sha256 = "1p0llz7n0p5gzpvqszmra9p88vnr0j88sp5ixhgbfz89bswg62ss"; }; - enableParallelBuilding = true; + nativeBuildInputs = [ meson ninja ]; - nativeBuildInputs = [ cmake pkg-config ]; - - buildInputs = [ - dyncall - gettext - libcsptr - nanomsg - ]; + preConfigure = '' + patchShebangs ci/isdir.py + ''; checkInputs = with python37Packages; [ cram ]; - cmakeFlags = [ "-DBXF_FORK_RESILIENCE=OFF" ]; - doCheck = true; - preCheck = '' - export LD_LIBRARY_PATH=`pwd`''${LD_LIBRARY_PATH:+:}$LD_LIBRARY_PATH - ''; outputs = [ "dev" "out" ]; @@ -38,10 +27,7 @@ stdenv.mkDerivation rec { description = "Convenient & cross-platform sandboxing C library"; homepage = "https://github.com/Snaipe/BoxFort"; license = licenses.mit; - maintainers = with maintainers; [ - thesola10 - Yumasi - ]; + maintainers = with maintainers; [ thesola10 Yumasi ]; platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/bzrtp/default.nix b/pkgs/development/libraries/bzrtp/default.nix index d54539d9f25..4fe53a5d629 100644 --- a/pkgs/development/libraries/bzrtp/default.nix +++ b/pkgs/development/libraries/bzrtp/default.nix @@ -27,7 +27,7 @@ stdenv.mkDerivation rec { NIX_CFLAGS_COMPILE = "-Wno-error=cast-function-type"; meta = with stdenv.lib; { - description = "BZRTP is an opensource implementation of ZRTP keys exchange protocol"; + description = "An opensource implementation of ZRTP keys exchange protocol"; homepage = "https://gitlab.linphone.org/BC/public/bzrtp"; # They have switched to GPLv3 on git HEAD so probably the next release will # be GPL3. diff --git a/pkgs/development/libraries/c-blosc/default.nix b/pkgs/development/libraries/c-blosc/default.nix index 59daf15d416..8f7cee75e92 100644 --- a/pkgs/development/libraries/c-blosc/default.nix +++ b/pkgs/development/libraries/c-blosc/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "c-blosc"; - version = "1.20.0"; + version = "1.20.1"; src = fetchFromGitHub { owner = "Blosc"; repo = "c-blosc"; rev = "v${version}"; - sha256 = "1rhv9na9cdp2j81a981s2y69c7m9apdiylf9j51dij0lm1m0ljdr"; + sha256 = "0a3yrig78plzjbazfqcfrzqhnw17xd0dcayvp4z4kp415kgs2a3s"; }; buildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/cairo/default.nix b/pkgs/development/libraries/cairo/default.nix index a414191ac0d..3a7c63165b7 100644 --- a/pkgs/development/libraries/cairo/default.nix +++ b/pkgs/development/libraries/cairo/default.nix @@ -35,6 +35,9 @@ in stdenv.mkDerivation rec { url = "https://gitlab.freedesktop.org/cairo/cairo/commit/6edf572ebb27b00d3c371ba5ae267e39d27d5b6d.patch"; sha256 = "112hgrrsmcwxh1r52brhi5lksq4pvrz4xhkzcf2iqp55jl2pb7n1"; }) + ] ++ optionals stdenv.hostPlatform.isDarwin [ + # Workaround https://gitlab.freedesktop.org/cairo/cairo/-/issues/121 + ./skip-configure-stderr-check.patch ]; outputs = [ "out" "dev" "devdoc" ]; diff --git a/pkgs/development/libraries/cairo/skip-configure-stderr-check.patch b/pkgs/development/libraries/cairo/skip-configure-stderr-check.patch new file mode 100644 index 00000000000..6deecf2a971 --- /dev/null +++ b/pkgs/development/libraries/cairo/skip-configure-stderr-check.patch @@ -0,0 +1,89 @@ +https://bugs.freedesktop.org/show_bug.cgi?id=30910#c6 + +Comment 6 Jeremy Huddleston Sequoia 2014-07-15 04:12:40 UTC + +Yes, it is still an issue. We just disable the buggy '"x$cairo_cc_stderr" != "x"' logic, but that's not really a portable solution for you: + +diff -Naurp cairo-1.12.2.orig/configure cairo-1.12.2/configure +--- cairo-1.12.2.orig/configure 2012-04-29 11:49:59.000000000 -0700 ++++ cairo-1.12.2/configure 2012-05-03 11:23:49.000000000 -0700 +@@ -18044,7 +18044,7 @@ fi + rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext + +- if test "x$cairo_cc_stderr" != "x"; then ++ if false; then + cairo_cc_flag=no + fi + +@@ -18091,7 +18091,7 @@ fi + rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext + +- if test "x$cairo_cc_stderr" != "x"; then ++ if false; then + cairo_cc_flag=no + fi + +@@ -18161,7 +18161,7 @@ fi + rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext + +- if test "x$cairo_cc_stderr" != "x"; then ++ if false; then + cairo_cc_flag=no + fi + +@@ -18217,7 +18217,7 @@ fi + rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext + +- if test "x$cairo_cc_stderr" != "x"; then ++ if false; then + cairo_cc_flag=no + fi + +@@ -19663,7 +19663,7 @@ fi + rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext + +- if test "x$cairo_cc_stderr" != "x"; then ++ if false; then + cairo_cc_flag=no + fi + +@@ -19710,7 +19710,7 @@ fi + rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext + +- if test "x$cairo_cc_stderr" != "x"; then ++ if false; then + cairo_cc_flag=no + fi + +@@ -32692,7 +32692,7 @@ fi + rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext + +- if test "x$cairo_cc_stderr" != "x"; then ++ if false; then + cairo_cc_flag=no + fi + +@@ -32811,7 +32811,7 @@ fi + rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext + +- if test "x$cairo_cc_stderr" != "x"; then ++ if false ; then + cairo_cc_flag=no + fi + +@@ -32892,7 +32892,7 @@ fi + rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext + +- if test "x$cairo_cc_stderr" != "x"; then ++ if false; then + cairo_cc_flag=no + fi diff --git a/pkgs/development/libraries/chipmunk/default.nix b/pkgs/development/libraries/chipmunk/default.nix index 017dc1fd9c2..7618476d62a 100644 --- a/pkgs/development/libraries/chipmunk/default.nix +++ b/pkgs/development/libraries/chipmunk/default.nix @@ -1,20 +1,27 @@ { stdenv, fetchurl, cmake, freeglut, libGLU, libGL, glfw2, glew, libX11, xorgproto -, libXi, libXmu +, libXi, libXmu, fetchpatch, libXrandr }: stdenv.mkDerivation rec { pname = "chipmunk"; majorVersion = "7"; - version = "${majorVersion}.0.1"; + version = "${majorVersion}.0.3"; src = fetchurl { url = "https://chipmunk-physics.net/release/Chipmunk-${majorVersion}.x/Chipmunk-${version}.tgz"; - sha256 = "0q4jwv1icz8spcjkp0v3bnygi6hq2zmnsgcxkwm8i2bxfxjb8m7y"; + sha256 = "06j9cfxsyrrnyvl7hsf55ac5mgff939mmijliampphlizyg0r2q4"; }; + patches = [ + (fetchpatch { + url = "https://github.com/slembcke/Chipmunk2D/commit/9a051e6fb970c7afe09ce2d564c163b81df050a8.patch"; + sha256 = "0ps8bjba1k544vcdx5w0qk7gcjq94yfigxf67j50s63yf70k2n70"; + }) + ]; + nativeBuildInputs = [ cmake ]; buildInputs = - [ freeglut libGLU libGL glfw2 glew libX11 xorgproto libXi libXmu ]; + [ freeglut libGLU libGL glfw2 glew libX11 xorgproto libXi libXmu libXrandr ]; postInstall = '' mkdir -p $out/bin diff --git a/pkgs/development/libraries/cimg/default.nix b/pkgs/development/libraries/cimg/default.nix index 1963534ae51..c50838bc0d5 100644 --- a/pkgs/development/libraries/cimg/default.nix +++ b/pkgs/development/libraries/cimg/default.nix @@ -8,7 +8,7 @@ stdenv.mkDerivation rec { owner = "dtschump"; repo = "CImg"; rev = "v.${version}"; - sha256 = "sha256-7v8651yDkxTdRMoGhEl4d/k7mxYwfIwW/rkuyjqVGwY="; + sha256 = "01hvjlxclbmrzqb8qz1h2sdkpybpg14q81na8kfi94w3bkkkmzzf"; }; installPhase = '' diff --git a/pkgs/development/libraries/cpp-utilities/default.nix b/pkgs/development/libraries/cpp-utilities/default.nix index cbe628aaf4e..b821faebdeb 100644 --- a/pkgs/development/libraries/cpp-utilities/default.nix +++ b/pkgs/development/libraries/cpp-utilities/default.nix @@ -7,13 +7,13 @@ stdenv.mkDerivation rec { pname = "cpp-utilities"; - version = "5.6.0"; + version = "5.7.0"; src = fetchFromGitHub { owner = "Martchus"; repo = pname; rev = "v${version}"; - sha256 = "0998pyrxicpalm2w1wmv7qrfhzgr45kl6xh9gv0zxhx2a4xjqq5v"; + sha256 = "04483v9bw6wp831f34fn46zj54v9y7f6qqfmx85fjxhkr3rqk4i0"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/ctypes_sh/default.nix b/pkgs/development/libraries/ctypes_sh/default.nix index 1e12afd95ca..d82296c3e66 100644 --- a/pkgs/development/libraries/ctypes_sh/default.nix +++ b/pkgs/development/libraries/ctypes_sh/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "ctypes.sh"; - version = "1.1"; + version = "1.2"; src = fetchFromGitHub { owner = "taviso"; repo = pname; rev = "v${version}"; - sha256 = "07rqbdxw33h92mllh0srymjjx52mddafs3jyzqpsflq3v0l0dk37"; + sha256 = "1wafyfhwd7nf7xdici0djpwgykizaz7jlarn0r1b4spnpjx1zbx4"; }; nativeBuildInputs = [ autoreconfHook pkgconfig ]; diff --git a/pkgs/development/libraries/dbus/default.nix b/pkgs/development/libraries/dbus/default.nix index 3598d8d938e..376fe9f64ee 100644 --- a/pkgs/development/libraries/dbus/default.nix +++ b/pkgs/development/libraries/dbus/default.nix @@ -10,6 +10,9 @@ , libSM ? null , x11Support ? (stdenv.isLinux || stdenv.isDarwin) , dbus +, docbook_xml_dtd_44 +, docbook-xsl-nons +, xmlto }: assert @@ -43,10 +46,13 @@ stdenv.mkDerivation rec { --replace 'DBUS_DAEMONDIR"/dbus-daemon"' '"/run/current-system/sw/bin/dbus-daemon"' ''; - outputs = [ "out" "dev" "lib" "doc" ]; + outputs = [ "out" "dev" "lib" "doc" "man" ]; nativeBuildInputs = [ pkgconfig + docbook_xml_dtd_44 + docbook-xsl-nons + xmlto ]; propagatedBuildInputs = [ @@ -63,6 +69,7 @@ stdenv.mkDerivation rec { configureFlags = [ "--enable-user-session" + "--enable-xml-docs" "--libexecdir=${placeholder ''out''}/libexec" "--datadir=/etc" "--localstatedir=/var" diff --git a/pkgs/development/libraries/duckdb/default.nix b/pkgs/development/libraries/duckdb/default.nix index dde0806add4..9b1adb7e235 100644 --- a/pkgs/development/libraries/duckdb/default.nix +++ b/pkgs/development/libraries/duckdb/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://github.com/cwida/duckdb"; - description = "DuckDB is an embeddable SQL OLAP Database Management System"; + description = "Embeddable SQL OLAP Database Management System"; license = licenses.mit; platforms = platforms.all; maintainers = with maintainers; [ costrouc ]; diff --git a/pkgs/development/libraries/embree/default.nix b/pkgs/development/libraries/embree/default.nix index 60d6af94762..650c1d4ce49 100644 --- a/pkgs/development/libraries/embree/default.nix +++ b/pkgs/development/libraries/embree/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "embree"; - version = "3.12.0"; + version = "3.12.1"; src = fetchFromGitHub { owner = "embree"; repo = "embree"; rev = "v${version}"; - sha256 = "1q06fkfww8z8pcnhaqc4d2zi8hn620i9h9dmpnrfy3azalvizhkq"; + sha256 = "0aznd16n7h8g3f6jcahzfp1dq4r7wayqvn03wsaskiq2dvsi4srd"; }; postPatch = '' diff --git a/pkgs/development/libraries/faudio/default.nix b/pkgs/development/libraries/faudio/default.nix index cc1bb09d390..2898eb937fc 100644 --- a/pkgs/development/libraries/faudio/default.nix +++ b/pkgs/development/libraries/faudio/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "faudio"; - version = "20.09"; + version = "20.10"; src = fetchFromGitHub { owner = "FNA-XNA"; repo = "FAudio"; rev = version; - sha256 = "097pdpd34aw420c46j6nrl5wdklgqrsznml0q2qxw1m7hrl7gkk6"; + sha256 = "0f5b45zdsy3yv2jsdy5zsd6xcfk1z5w5vlyvnim3d4bn875sp370"; }; nativeBuildInputs = [cmake]; diff --git a/pkgs/development/libraries/fcft/default.nix b/pkgs/development/libraries/fcft/default.nix index 0c5d2b334ac..1ce09b63cbe 100644 --- a/pkgs/development/libraries/fcft/default.nix +++ b/pkgs/development/libraries/fcft/default.nix @@ -1,18 +1,18 @@ { stdenv, lib, fetchgit, pkg-config, meson, ninja, scdoc -,freetype, fontconfig, pixman, tllist, check }: +,freetype, fontconfig, harfbuzz, pixman, tllist, check }: stdenv.mkDerivation rec { pname = "fcft"; - version = "2.2.6"; + version = "2.3.1"; src = fetchgit { url = "https://codeberg.org/dnkl/fcft.git"; - rev = "${version}"; - sha256 = "06zywvvgrch9k4d07bir2sxddwsli2gzpvlvjfcwbrj3bw5x6j1b"; + rev = version; + sha256 = "sha256-FD3KfaQbSEA1XdmS6YxH+c5fSsra9Ro/KKslb7Brv7U="; }; nativeBuildInputs = [ pkg-config meson ninja scdoc ]; - buildInputs = [ freetype fontconfig pixman tllist ]; + buildInputs = [ freetype fontconfig pixman tllist harfbuzz ]; checkInputs = [ check ]; mesonFlags = [ "--buildtype=release" ]; diff --git a/pkgs/development/libraries/ffmpeg-full/default.nix b/pkgs/development/libraries/ffmpeg-full/default.nix index c23fb87f2fa..df7043cd44e 100644 --- a/pkgs/development/libraries/ffmpeg-full/default.nix +++ b/pkgs/development/libraries/ffmpeg-full/default.nix @@ -244,6 +244,15 @@ stdenv.mkDerivation rec { pname = "ffmpeg-full"; inherit (ffmpeg) src version; + # this should go away in the next release + patches = [ + (fetchpatch { + url = "https://git.videolan.org/?p=ffmpeg.git;a=patch;h=7c59e1b0f285cd7c7b35fcd71f49c5fd52cf9315"; + sha256 = "sha256-dqpmpDFETTuWHWolMoLaubU4BeDEuQaBNA0wmzL1f8o="; + name = "fix_libsrt.patch"; + }) + ]; + prePatch = '' patchShebangs . '' + stdenv.lib.optionalString stdenv.isDarwin '' diff --git a/pkgs/development/libraries/flatbuffers/default.nix b/pkgs/development/libraries/flatbuffers/default.nix index 0b0e0fd9e22..424aeb8637d 100644 --- a/pkgs/development/libraries/flatbuffers/default.nix +++ b/pkgs/development/libraries/flatbuffers/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { checkTarget = "test"; meta = { - description = "Memory Efficient Serialization Library."; + description = "Memory Efficient Serialization Library"; longDescription = '' FlatBuffers is an efficient cross platform serialization library for games and other memory constrained apps. It allows you to directly diff --git a/pkgs/development/libraries/galario/default.nix b/pkgs/development/libraries/galario/default.nix index 08450e56983..84594b8dbeb 100644 --- a/pkgs/development/libraries/galario/default.nix +++ b/pkgs/development/libraries/galario/default.nix @@ -18,20 +18,20 @@ let in stdenv.mkDerivation rec { pname = "galario"; - version = "1.2.1"; + version = "1.2.2"; src = fetchFromGitHub { owner = "mtazzari"; repo = pname; rev = "v${version}"; - sha256 = "1akz7md7ly16a89zr880c265habakqdg9sj8iil90klqa0i21w6g"; + sha256 = "0dw88ga50x3jwyfgcarn4azlhiarggvdg262hilm7rbrvlpyvha0"; }; nativeBuildInputs = [ cmake ]; buildInputs = [ fftw fftwFloat ] - ++ stdenv.lib.optional enablePython pythonPackages.python - ++ stdenv.lib.optional stdenv.isDarwin llvmPackages.openmp + ++ stdenv.lib.optional enablePython pythonPackages.python + ++ stdenv.lib.optional stdenv.isDarwin llvmPackages.openmp ; propagatedBuildInputs = stdenv.lib.optional enablePython [ @@ -40,7 +40,7 @@ stdenv.mkDerivation rec { pythonPackages.pytest ]; - checkInputs = stdenv.lib.optional enablePython pythonPackages.scipy; + checkInputs = stdenv.lib.optional enablePython [ pythonPackages.scipy pythonPackages.pytestcov ]; preConfigure = '' mkdir -p build/external/src diff --git a/pkgs/development/libraries/gdal/2.4.0.nix b/pkgs/development/libraries/gdal/2.4.0.nix index 201bec30e22..d3505679e4d 100644 --- a/pkgs/development/libraries/gdal/2.4.0.nix +++ b/pkgs/development/libraries/gdal/2.4.0.nix @@ -39,7 +39,7 @@ stdenv.mkDerivation rec { "--with-poppler=${poppler.dev}" # optional "--with-libz=${zlib.dev}" # optional "--with-pg=${postgresql}/bin/pg_config" - "--with-mysql=${libmysqlclient}/bin/mysql_config" + "--with-mysql=${getDev libmysqlclient}/bin/mysql_config" "--with-geotiff=${libgeotiff.dev}" "--with-sqlite3=${sqlite.dev}" "--with-spatialite=${libspatialite}" diff --git a/pkgs/development/libraries/gdal/default.nix b/pkgs/development/libraries/gdal/default.nix index 72135f1a62d..1295a100232 100644 --- a/pkgs/development/libraries/gdal/default.nix +++ b/pkgs/development/libraries/gdal/default.nix @@ -50,7 +50,7 @@ stdenv.mkDerivation rec { "--with-poppler=${poppler.dev}" # optional "--with-libz=${zlib.dev}" # optional "--with-pg=yes" # since gdal 3.0 doesn't use ${postgresql}/bin/pg_config - "--with-mysql=${libmysqlclient}/bin/mysql_config" + "--with-mysql=${getDev libmysqlclient}/bin/mysql_config" "--with-geotiff=${libgeotiff}" "--with-sqlite3=${sqlite.dev}" "--with-spatialite=${libspatialite}" diff --git a/pkgs/development/libraries/gdk-pixbuf/default.nix b/pkgs/development/libraries/gdk-pixbuf/default.nix index 08b8f70b2d9..1f4bc5c12ad 100644 --- a/pkgs/development/libraries/gdk-pixbuf/default.nix +++ b/pkgs/development/libraries/gdk-pixbuf/default.nix @@ -21,6 +21,7 @@ , doCheck ? false , makeWrapper , fetchpatch +, lib }: stdenv.mkDerivation rec { @@ -74,7 +75,7 @@ stdenv.mkDerivation rec { mesonFlags = [ "-Ddocs=true" "-Dx11=false" # use gdk-pixbuf-xlib - "-Dgir=${if gobject-introspection != null then "true" else "false"}" + "-Dgir=${lib.boolToString (gobject-introspection != null)}" "-Dgio_sniffing=false" ]; diff --git a/pkgs/development/libraries/gegl/4.0.nix b/pkgs/development/libraries/gegl/4.0.nix index 6b38251a680..c25f9145ea5 100644 --- a/pkgs/development/libraries/gegl/4.0.nix +++ b/pkgs/development/libraries/gegl/4.0.nix @@ -42,7 +42,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://download.gimp.org/pub/gegl/${stdenv.lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "097427icgpgvcx40019b3dm8m84cchz79pixzpz648drs8p1wdqg"; + sha256 = "sha256-DzceLtK5IWL+/T3edD5kjKCKahsrBQBIZ/vdx+IR5CQ="; }; patches = [ @@ -50,7 +50,7 @@ stdenv.mkDerivation rec { # https://gitlab.gnome.org/GNOME/gegl/-/merge_requests/83 (fetchpatch { url = "https://gitlab.gnome.org/GNOME/gegl/-/merge_requests/83.patch"; - sha256 = "CSBYbJ2xnEN23xrla1qqr244jxOR5vNK8ljBSXdg4yE="; + sha256 = "sha256-CSBYbJ2xnEN23xrla1qqr244jxOR5vNK8ljBSXdg4yE="; }) ]; @@ -120,8 +120,8 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Graph-based image processing framework"; - homepage = "http://www.gegl.org"; - license = licenses.gpl3; + homepage = "https://www.gegl.org"; + license = licenses.lgpl3Plus; maintainers = with maintainers; [ jtojnar ]; platforms = platforms.unix; }; diff --git a/pkgs/development/libraries/gegl/default.nix b/pkgs/development/libraries/gegl/default.nix index 1b864317217..a99ec05d771 100644 --- a/pkgs/development/libraries/gegl/default.nix +++ b/pkgs/development/libraries/gegl/default.nix @@ -1,12 +1,24 @@ -{ stdenv, fetchurl, pkgconfig, babl, libpng, cairo, libjpeg -, librsvg, pango, gtk2, bzip2, intltool, libintl +{ stdenv +, fetchurl +, pkgconfig +, babl +, libpng +, cairo +, libjpeg +, librsvg +, pango +, gtk2 +, bzip2 +, intltool +, libintl , OpenGL ? null }: stdenv.mkDerivation rec { - name = "gegl-0.2.0"; + pname = "gegl"; + version = "0.2.0"; src = fetchurl { - url = "ftp://ftp.gtk.org/pub/gegl/0.2/${name}.tar.bz2"; + url = "ftp://ftp.gtk.org/pub/gegl/0.2/${pname}-${version}.tar.bz2"; sha256 = "df2e6a0d9499afcbc4f9029c18d9d1e0dd5e8710a75e17c9b1d9a6480dd8d426"; }; @@ -17,7 +29,7 @@ stdenv.mkDerivation rec { name = "CVE-2012-4433.patch"; })]; - # needs fonts otherwise don't know how to pass them + # needs fonts otherwise don't know how to pass them configureFlags = [ "--disable-docs" ]; buildInputs = [ babl libpng cairo libjpeg librsvg pango gtk2 bzip2 intltool libintl ] @@ -27,10 +39,11 @@ stdenv.mkDerivation rec { doCheck = false; # fails 3 out of 19 tests - meta = { + meta = with stdenv.lib; { description = "Graph-based image processing framework"; - homepage = "http://www.gegl.org"; - license = stdenv.lib.licenses.gpl3; - platforms = stdenv.lib.platforms.unix; + homepage = "https://www.gegl.org"; + license = licenses.lgpl3Plus; + maintainers = with maintainers; [ jtojnar ]; + platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/geoclue/default.nix b/pkgs/development/libraries/geoclue/default.nix index da76c6dfedc..74d778c5c55 100644 --- a/pkgs/development/libraries/geoclue/default.nix +++ b/pkgs/development/libraries/geoclue/default.nix @@ -39,7 +39,7 @@ stdenv.mkDerivation rec { mesonFlags = [ "-Dsystemd-system-unit-dir=${placeholder "out"}/etc/systemd/system" - "-Ddemo-agent=${if withDemoAgent then "true" else "false"}" + "-Ddemo-agent=${boolToString withDemoAgent}" "--sysconfdir=/etc" "-Dsysconfdir_install=${placeholder "out"}/etc" "-Ddbus-srv-user=geoclue" diff --git a/pkgs/development/libraries/glib/default.nix b/pkgs/development/libraries/glib/default.nix index 88848deec41..df19b9fc88c 100644 --- a/pkgs/development/libraries/glib/default.nix +++ b/pkgs/development/libraries/glib/default.nix @@ -108,7 +108,7 @@ stdenv.mkDerivation rec { mesonFlags = [ # Avoid the need for gobject introspection binaries in PATH in cross-compiling case. # Instead we just copy them over from the native output. - "-Dgtk_doc=${if stdenv.hostPlatform == stdenv.buildPlatform then "true" else "false"}" + "-Dgtk_doc=${boolToString (stdenv.hostPlatform == stdenv.buildPlatform)}" "-Dnls=enabled" "-Ddevbindir=${placeholder ''dev''}/bin" ]; diff --git a/pkgs/development/libraries/glibc/2.30-cve-2020-1752.patch b/pkgs/development/libraries/glibc/2.30-cve-2020-1752.patch deleted file mode 100644 index 75d874b93d0..00000000000 --- a/pkgs/development/libraries/glibc/2.30-cve-2020-1752.patch +++ /dev/null @@ -1,62 +0,0 @@ -From: Andreas Schwab -Date: Wed, 19 Feb 2020 16:21:46 +0000 (+0100) -Subject: Fix use-after-free in glob when expanding ~user (bug 25414) -X-Git-Url: https://sourceware.org/git/?p=glibc.git;a=commitdiff_plain;h=da97c6b88eb03fb834e92964b0895c2ac8d61f63;hp=dd34bce38c822b67fcc42e73969bf6699d6874b6 - -Fix use-after-free in glob when expanding ~user (bug 25414) - -The value of `end_name' points into the value of `dirname', thus don't -deallocate the latter before the last use of the former. - -(cherry picked from commit ddc650e9b3dc916eab417ce9f79e67337b05035c) ---- - -diff --git a/posix/glob.c b/posix/glob.c -index e73e35c510..c6cbd0eb43 100644 ---- a/posix/glob.c -+++ b/posix/glob.c -@@ -827,31 +827,32 @@ __glob (const char *pattern, int flags, int (*errfunc) (const char *, int), - { - size_t home_len = strlen (p->pw_dir); - size_t rest_len = end_name == NULL ? 0 : strlen (end_name); -- char *d; -+ char *d, *newp; -+ bool use_alloca = glob_use_alloca (alloca_used, -+ home_len + rest_len + 1); - -- if (__glibc_unlikely (malloc_dirname)) -- free (dirname); -- malloc_dirname = 0; -- -- if (glob_use_alloca (alloca_used, home_len + rest_len + 1)) -- dirname = alloca_account (home_len + rest_len + 1, -- alloca_used); -+ if (use_alloca) -+ newp = alloca_account (home_len + rest_len + 1, alloca_used); - else - { -- dirname = malloc (home_len + rest_len + 1); -- if (dirname == NULL) -+ newp = malloc (home_len + rest_len + 1); -+ if (newp == NULL) - { - scratch_buffer_free (&pwtmpbuf); - retval = GLOB_NOSPACE; - goto out; - } -- malloc_dirname = 1; - } -- d = mempcpy (dirname, p->pw_dir, home_len); -+ d = mempcpy (newp, p->pw_dir, home_len); - if (end_name != NULL) - d = mempcpy (d, end_name, rest_len); - *d = '\0'; - -+ if (__glibc_unlikely (malloc_dirname)) -+ free (dirname); -+ dirname = newp; -+ malloc_dirname = !use_alloca; -+ - dirlen = home_len + rest_len; - dirname_modified = 1; - } diff --git a/pkgs/development/libraries/glibc/2.31-cve-2020-10029.patch b/pkgs/development/libraries/glibc/2.31-cve-2020-10029.patch deleted file mode 100644 index 8334398e891..00000000000 --- a/pkgs/development/libraries/glibc/2.31-cve-2020-10029.patch +++ /dev/null @@ -1,79 +0,0 @@ -diff --git a/sysdeps/ieee754/ldbl-96/Makefile b/sysdeps/ieee754/ldbl-96/Makefile -index 995e90d6da..318628aed6 100644 ---- a/sysdeps/ieee754/ldbl-96/Makefile -+++ b/sysdeps/ieee754/ldbl-96/Makefile -@@ -17,5 +17,6 @@ - # . - - ifeq ($(subdir),math) --tests += test-canonical-ldbl-96 test-totalorderl-ldbl-96 -+tests += test-canonical-ldbl-96 test-totalorderl-ldbl-96 test-sinl-pseudo -+CFLAGS-test-sinl-pseudo.c += -fstack-protector-all - endif -diff --git a/sysdeps/ieee754/ldbl-96/e_rem_pio2l.c b/sysdeps/ieee754/ldbl-96/e_rem_pio2l.c -index 5f742321ae..bcdf20179f 100644 ---- a/sysdeps/ieee754/ldbl-96/e_rem_pio2l.c -+++ b/sysdeps/ieee754/ldbl-96/e_rem_pio2l.c -@@ -210,6 +210,18 @@ __ieee754_rem_pio2l (long double x, long double *y) - return 0; - } - -+ if ((i0 & 0x80000000) == 0) -+ { -+ /* Pseudo-zero and unnormal representations are not valid -+ representations of long double. We need to avoid stack -+ corruption in __kernel_rem_pio2, which expects input in a -+ particular normal form, but those representations do not need -+ to be consistently handled like any particular floating-point -+ value. */ -+ y[1] = y[0] = __builtin_nanl (""); -+ return 0; -+ } -+ - /* Split the 64 bits of the mantissa into three 24-bit integers - stored in a double array. */ - exp = j0 - 23; ---- /dev/null -+++ b/sysdeps/ieee754/ldbl-96/test-sinl-pseudo.c -@@ -0,0 +1,41 @@ -+/* Test sinl for pseudo-zeros and unnormals for ldbl-96 (bug 25487). -+ Copyright (C) 2020 Free Software Foundation, Inc. -+ This file is part of the GNU C Library. -+ -+ The GNU C Library is free software; you can redistribute it and/or -+ modify it under the terms of the GNU Lesser General Public -+ License as published by the Free Software Foundation; either -+ version 2.1 of the License, or (at your option) any later version. -+ -+ The GNU C Library is distributed in the hope that it will be useful, -+ but WITHOUT ANY WARRANTY; without even the implied warranty of -+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU -+ Lesser General Public License for more details. -+ -+ You should have received a copy of the GNU Lesser General Public -+ License along with the GNU C Library; if not, see -+ . */ -+ -+#include -+#include -+#include -+ -+static int -+do_test (void) -+{ -+ for (int i = 0; i < 64; i++) -+ { -+ uint64_t sig = i == 63 ? 0 : 1ULL << i; -+ long double ld; -+ SET_LDOUBLE_WORDS (ld, 0x4141, -+ sig >> 32, sig & 0xffffffffULL); -+ /* The requirement is that no stack overflow occurs when the -+ pseudo-zero or unnormal goes through range reduction. */ -+ volatile long double ldr; -+ ldr = sinl (ld); -+ (void) ldr; -+ } -+ return 0; -+} -+ -+#include diff --git a/pkgs/development/libraries/glibc/common.nix b/pkgs/development/libraries/glibc/common.nix index 0b2f34c7b76..3de840d4e3c 100644 --- a/pkgs/development/libraries/glibc/common.nix +++ b/pkgs/development/libraries/glibc/common.nix @@ -41,9 +41,9 @@ } @ args: let - version = "2.31"; + version = "2.32"; patchSuffix = ""; - sha256 = "05zxkyz9bv3j9h0xyid1rhvh3klhsmrpkf3bcs6frvlgyr2gwilj"; + sha256 = "0di848ibffrnwq7g2dvgqrnn4xqhj3h96csn69q4da51ymafl9qn"; in assert withLinuxHeaders -> linuxHeaders != null; @@ -59,9 +59,6 @@ stdenv.mkDerivation ({ patches = [ - /* Have rpcgen(1) look for cpp(1) in $PATH. */ - ./rpcgen-path.patch - /* Allow NixOS and Nix to handle the locale-archive. */ ./nix-locale-archive.patch @@ -113,8 +110,6 @@ stdenv.mkDerivation ({ }) ./fix-x64-abi.patch - ./2.30-cve-2020-1752.patch - ./2.31-cve-2020-10029.patch ] ++ lib.optional stdenv.hostPlatform.isMusl ./fix-rpc-types-musl-conflicts.patch ++ lib.optional stdenv.buildPlatform.isDarwin ./darwin-cross-build.patch; @@ -146,8 +141,6 @@ stdenv.mkDerivation ({ configureFlags = [ "-C" "--enable-add-ons" - "--enable-obsolete-nsl" - "--enable-obsolete-rpc" "--sysconfdir=/etc" "--enable-stackguard-randomization" (lib.withFeatureAs withLinuxHeaders "headers" "${linuxHeaders}/include") @@ -226,7 +219,7 @@ stdenv.mkDerivation ({ doCheck = false; # fails - meta = { + meta = with lib; { homepage = "https://www.gnu.org/software/libc/"; description = "The GNU C Library"; @@ -239,10 +232,10 @@ stdenv.mkDerivation ({ most systems with the Linux kernel. ''; - license = lib.licenses.lgpl2Plus; + license = licenses.lgpl2Plus; - maintainers = [ lib.maintainers.eelco ]; - platforms = lib.platforms.linux; + maintainers = with maintainers; [ eelco ma27 ]; + platforms = platforms.linux; } // meta; } diff --git a/pkgs/development/libraries/glpk/default.nix b/pkgs/development/libraries/glpk/default.nix index 8c5a50c43d1..124e03baee1 100644 --- a/pkgs/development/libraries/glpk/default.nix +++ b/pkgs/development/libraries/glpk/default.nix @@ -1,6 +1,7 @@ { stdenv , fetchurl , fetchpatch +, libmysqlclient # Excerpt from glpk's INSTALL file: # This feature allows the exact simplex solver to use the GNU MP # bignum library. If it is disabled, the exact simplex solver uses the @@ -21,9 +22,11 @@ stdenv.mkDerivation rec { sha256 = "040sfaa9jclg2nqdh83w71sv9rc1sznpnfiripjdyr48cady50a2"; }; - buildInputs = stdenv.lib.optionals withGmp [ - gmp - ]; + buildInputs = + [ libmysqlclient + ] ++ stdenv.lib.optionals withGmp [ + gmp + ]; configureFlags = stdenv.lib.optionals withGmp [ "--with-gmp" @@ -47,6 +50,13 @@ stdenv.mkDerivation rec { }) ]; + postPatch = + # Do not hardcode the include path for libmysqlclient. + '' + substituteInPlace configure \ + --replace '-I/usr/include/mysql' '$(mysql_config --include)' + ''; + doCheck = true; meta = { diff --git a/pkgs/development/libraries/gnutls/default.nix b/pkgs/development/libraries/gnutls/default.nix index f75d107718d..2436fc4afcb 100644 --- a/pkgs/development/libraries/gnutls/default.nix +++ b/pkgs/development/libraries/gnutls/default.nix @@ -8,7 +8,7 @@ assert guileBindings -> guile != null; let - version = "3.6.14"; + version = "3.6.15"; # XXX: Gnulib's `test-select' fails on FreeBSD: # https://hydra.nixos.org/build/2962084/nixlog/1/raw . @@ -24,7 +24,7 @@ stdenv.mkDerivation { src = fetchurl { url = "mirror://gnupg/gnutls/v3.6/gnutls-${version}.tar.xz"; - sha256 = "0qwxsfizynly0ns537vnhnlm5lh03la4vbsmz675n0n7vqd7ac2n"; + sha256 = "0n0m93ymzd0q9hbknxc2ycanz49sqlkyyf73g9fk7n787llc7a0f"; }; outputs = [ "bin" "dev" "out" "man" "devdoc" ]; diff --git a/pkgs/development/libraries/grpc/default.nix b/pkgs/development/libraries/grpc/default.nix index b5d4db8b419..e7d1aa4bf92 100644 --- a/pkgs/development/libraries/grpc/default.nix +++ b/pkgs/development/libraries/grpc/default.nix @@ -1,4 +1,6 @@ -{ stdenv, fetchFromGitHub, fetchpatch, cmake, zlib, c-ares, pkgconfig, openssl, protobuf, gflags, abseil-cpp }: +{ stdenv, fetchFromGitHub, fetchpatch, cmake, zlib, c-ares, pkgconfig, openssl, protobuf +, gflags, abseil-cpp, libnsl +}: stdenv.mkDerivation rec { version = "1.32.0"; # N.B: if you change this, change pythonPackages.grpcio-tools to a matching version too @@ -19,7 +21,7 @@ stdenv.mkDerivation rec { ]; nativeBuildInputs = [ cmake pkgconfig ]; - buildInputs = [ zlib c-ares c-ares.cmake-config openssl protobuf gflags abseil-cpp ]; + buildInputs = [ zlib c-ares c-ares.cmake-config openssl protobuf gflags abseil-cpp libnsl ]; cmakeFlags = [ "-DgRPC_ZLIB_PROVIDER=package" diff --git a/pkgs/development/libraries/gtest/default.nix b/pkgs/development/libraries/gtest/default.nix index 62234651aa9..4e8ce95737d 100644 --- a/pkgs/development/libraries/gtest/default.nix +++ b/pkgs/development/libraries/gtest/default.nix @@ -1,4 +1,4 @@ -{ stdenv, cmake, ninja, fetchFromGitHub }: +{ stdenv, cmake, ninja, fetchFromGitHub, fetchpatch }: stdenv.mkDerivation rec { pname = "gtest"; @@ -15,6 +15,11 @@ stdenv.mkDerivation rec { patches = [ ./fix-cmake-config-includedir.patch + (fetchpatch { + name = "fix-pkgconfig-paths.patch"; + url = "https://github.com/google/googletest/commit/5126ff48d9ac54828d1947d1423a5ef2a8efee3b.patch"; + sha256 = "sha256-TBvECU/9nuvwjsCjWJP2b6DNy+FYnHIFZeuVW7g++JE="; + }) ]; nativeBuildInputs = [ cmake ninja ]; diff --git a/pkgs/development/libraries/gtk/2.x.nix b/pkgs/development/libraries/gtk/2.x.nix index 09cb016dbb6..e01034a3d58 100644 --- a/pkgs/development/libraries/gtk/2.x.nix +++ b/pkgs/development/libraries/gtk/2.x.nix @@ -12,11 +12,18 @@ assert cupsSupport -> cups != null; with stdenv.lib; +let + pname = "gtk+"; + version = "2.24.32"; # remove passthru on next update +in stdenv.mkDerivation rec { - name = "gtk+-2.24.32"; + name = "${pname}-${version}"; + + # passthru to prevent rebuild but allow pname and version + passthru = { inherit pname version; }; src = fetchurl { - url = "mirror://gnome/sources/gtk+/2.24/${name}.tar.xz"; + url = "mirror://gnome/sources/gtk+/2.24/${pname}-${version}.tar.xz"; sha256 = "b6c8a93ddda5eabe3bfee1eb39636c9a03d2a56c7b62828b359bf197943c582e"; }; diff --git a/pkgs/development/libraries/gts/default.nix b/pkgs/development/libraries/gts/default.nix index adf914369cf..48bdfc9b5e1 100644 --- a/pkgs/development/libraries/gts/default.nix +++ b/pkgs/development/libraries/gts/default.nix @@ -1,4 +1,4 @@ -{ fetchurl, stdenv, pkgconfig, autoreconfHook, gettext, glib }: +{ fetchurl, stdenv, pkgconfig, autoreconfHook, gettext, glib, buildPackages }: stdenv.mkDerivation rec { @@ -12,12 +12,26 @@ stdenv.mkDerivation rec { sha256 = "07mqx09jxh8cv9753y2d2jsv7wp8vjmrd7zcfpbrddz3wc9kx705"; }; - nativeBuildInputs = [ pkgconfig autoreconfHook ]; + nativeBuildInputs = [ + pkgconfig + autoreconfHook + glib # required to satisfy AM_PATH_GLIB_2_0 + ]; buildInputs = [ gettext ]; propagatedBuildInputs = [ glib ]; doCheck = false; # fails with "permission denied" + preBuild = stdenv.lib.optionalString (stdenv.hostPlatform != stdenv.buildPlatform) '' + pushd src + make CC=${buildPackages.stdenv.cc}/bin/cc predicates_init + mv predicates_init predicates_init_build + make clean + popd + + substituteInPlace src/Makefile --replace "./predicates_init" "./predicates_init_build" + ''; + meta = { homepage = "http://gts.sourceforge.net/"; license = stdenv.lib.licenses.lgpl2Plus; diff --git a/pkgs/development/libraries/igraph/default.nix b/pkgs/development/libraries/igraph/default.nix index 6a55359e168..70b3d7e767c 100644 --- a/pkgs/development/libraries/igraph/default.nix +++ b/pkgs/development/libraries/igraph/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "igraph"; - version = "0.8.2"; + version = "0.8.3"; src = fetchFromGitHub { owner = "igraph"; repo = pname; rev = version; - sha256 = "015yh9s19lmxm7l1ld8adlsqh1lrmzicl801saixdwl9w05hfva4"; + sha256 = "05k5ws1qgbfkxf6y923r61m42gy45l9awqqbfjqgrb3ricfr4wha"; }; nativeBuildInputs = [ pkgconfig autoreconfHook ]; diff --git a/pkgs/development/libraries/intel-media-driver/default.nix b/pkgs/development/libraries/intel-media-driver/default.nix index c43787c29dd..cb8c0a1cb14 100644 --- a/pkgs/development/libraries/intel-media-driver/default.nix +++ b/pkgs/development/libraries/intel-media-driver/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "intel-media-driver"; - version = "20.2.0"; + version = "20.3.0"; src = fetchFromGitHub { owner = "intel"; repo = "media-driver"; rev = "intel-media-${version}"; - sha256 = "02a9wm7cz0nkpyfwic4a0dfm9bx1d2sybgh5rv0c618pl41mla33"; + sha256 = "0dy30g32iqyygap3cm1idbhwnm1p3qvf2j2nzcr9n5im287h5gcr"; }; cmakeFlags = [ diff --git a/pkgs/development/libraries/intel-media-sdk/default.nix b/pkgs/development/libraries/intel-media-sdk/default.nix index 83d901780c5..90f6b4d49b8 100644 --- a/pkgs/development/libraries/intel-media-sdk/default.nix +++ b/pkgs/development/libraries/intel-media-sdk/default.nix @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { doCheck = true; meta = with stdenv.lib; { - description = "Intel Media SDK."; + description = "Intel Media SDK"; license = licenses.mit; maintainers = with maintainers; [ midchildan ]; platforms = [ "x86_64-linux" ]; diff --git a/pkgs/development/libraries/irrlicht/default.nix b/pkgs/development/libraries/irrlicht/default.nix index efb4c2022c4..84e7fae6045 100644 --- a/pkgs/development/libraries/irrlicht/default.nix +++ b/pkgs/development/libraries/irrlicht/default.nix @@ -10,6 +10,10 @@ stdenv.mkDerivation rec { src = common.src; + postPatch = '' + sed -ie '/sys\/sysctl.h/d' source/Irrlicht/COSOperator.cpp + ''; + preConfigure = '' cd source/Irrlicht ''; diff --git a/pkgs/development/libraries/itk/default.nix b/pkgs/development/libraries/itk/default.nix index 1288242faf2..65e41a58a47 100644 --- a/pkgs/development/libraries/itk/default.nix +++ b/pkgs/development/libraries/itk/default.nix @@ -12,6 +12,12 @@ stdenv.mkDerivation rec { sha256 = "1z7rmqrhgl7hfb3d0077kvp8vpi05r2zk3qyqzmv7bzbal5sqqhv"; }; + postPatch = '' + substituteInPlace CMake/ITKSetStandardCompilerFlags.cmake \ + --replace "-march=corei7" "" \ + --replace "-mtune=native" "" + ''; + cmakeFlags = [ "-DBUILD_EXAMPLES=OFF" "-DBUILD_SHARED_LIBS=ON" diff --git a/pkgs/development/libraries/jcal/default.nix b/pkgs/development/libraries/jcal/default.nix index 8e7818bf4e5..a40de74037a 100644 --- a/pkgs/development/libraries/jcal/default.nix +++ b/pkgs/development/libraries/jcal/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { preAutoreconf = "cd sources/"; meta = with stdenv.lib; { - description = "Jalali calendar is a small and portable free software library to manipulate date and time in Jalali calendar system."; + description = "Jalali calendar is a small and portable free software library to manipulate date and time in Jalali calendar system"; homepage = "http://nongnu.org/jcal/"; license = licenses.gpl3; maintainers = [ maintainers.linarcx ]; diff --git a/pkgs/development/libraries/jsoncpp/default.nix b/pkgs/development/libraries/jsoncpp/default.nix index 8635c1fb40d..5e361a09d35 100644 --- a/pkgs/development/libraries/jsoncpp/default.nix +++ b/pkgs/development/libraries/jsoncpp/default.nix @@ -53,7 +53,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { inherit version; homepage = "https://github.com/open-source-parsers/jsoncpp"; - description = "A C++ library for interacting with JSON."; + description = "A C++ library for interacting with JSON"; maintainers = with maintainers; [ ttuegel cpages nand0p ]; license = licenses.mit; platforms = platforms.all; diff --git a/pkgs/development/libraries/kde-frameworks/kconfigwidgets/default.nix b/pkgs/development/libraries/kde-frameworks/kconfigwidgets/default.nix index 3d7c7cdedef..dcbdf6eb5f6 100644 --- a/pkgs/development/libraries/kde-frameworks/kconfigwidgets/default.nix +++ b/pkgs/development/libraries/kde-frameworks/kconfigwidgets/default.nix @@ -12,4 +12,7 @@ mkDerivation { patches = [ ./0001-qdiriterator-follow-symlinks.patch ]; outputs = [ "out" "dev" ]; outputBin = "dev"; + postInstall = '' + moveToOutput ''${qtPluginPrefix:?}/designer/kconfigwidgets5widgets.so "$out" + ''; } diff --git a/pkgs/development/libraries/lcms2/default.nix b/pkgs/development/libraries/lcms2/default.nix index 0cf62285890..6e81dfc0718 100644 --- a/pkgs/development/libraries/lcms2/default.nix +++ b/pkgs/development/libraries/lcms2/default.nix @@ -12,6 +12,9 @@ stdenv.mkDerivation rec { propagatedBuildInputs = [ libtiff libjpeg zlib ]; + # See https://trac.macports.org/ticket/60656 + LDFLAGS = if stdenv.hostPlatform.isDarwin then "-Wl,-w" else null; + meta = with stdenv.lib; { description = "Color management engine"; homepage = "http://www.littlecms.com/"; diff --git a/pkgs/development/libraries/libamqpcpp/default.nix b/pkgs/development/libraries/libamqpcpp/default.nix index 885338793f1..02aa7be623c 100644 --- a/pkgs/development/libraries/libamqpcpp/default.nix +++ b/pkgs/development/libraries/libamqpcpp/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "libamqpcpp"; - version = "4.1.7"; + version = "4.2.1"; src = fetchFromGitHub { owner = "CopernicaMarketingSoftware"; repo = "AMQP-CPP"; rev = "v${version}"; - sha256 = "16xgl0yqzqkqfrz7x9rbbv8rj5rg5jlz4a7apj9igqb58q0w362x"; + sha256 = "0993vlvpa3vwg7qb5vl3jcnqwb8dqqfrxg4gg8mz7icnhx57kj34"; }; buildInputs = [ openssl ]; diff --git a/pkgs/development/libraries/libarchive/default.nix b/pkgs/development/libraries/libarchive/default.nix index d1917de37d6..3c97ce21ce0 100644 --- a/pkgs/development/libraries/libarchive/default.nix +++ b/pkgs/development/libraries/libarchive/default.nix @@ -2,8 +2,10 @@ fetchFromGitHub, stdenv, pkgconfig, autoreconfHook, acl, attr, bzip2, e2fsprogs, libxml2, lzo, openssl, sharutils, xz, zlib, zstd, - # Optional but increases closure only negligibly. - xarSupport ? true, + # Optional but increases closure only negligibly. Also, while libxml2 + # builds fine on windows, but libarchive has trouble linking windows + # things it depends on for some reason. + xarSupport ? stdenv.hostPlatform.isUnix, }: assert xarSupport -> libxml2 != null; @@ -22,7 +24,9 @@ stdenv.mkDerivation rec { outputs = [ "out" "lib" "dev" ]; nativeBuildInputs = [ pkgconfig autoreconfHook ]; - buildInputs = [ sharutils zlib bzip2 openssl xz lzo zstd ] + buildInputs = + stdenv.lib.optional stdenv.hostPlatform.isUnix sharutils + ++ [ zlib bzip2 openssl xz lzo zstd ] ++ stdenv.lib.optionals stdenv.isLinux [ e2fsprogs attr acl ] ++ stdenv.lib.optional xarSupport libxml2; diff --git a/pkgs/development/libraries/libayatana-appindicator/default.nix b/pkgs/development/libraries/libayatana-appindicator/default.nix index 84ecbc81ca5..248c33f7e0e 100644 --- a/pkgs/development/libraries/libayatana-appindicator/default.nix +++ b/pkgs/development/libraries/libayatana-appindicator/default.nix @@ -1,5 +1,6 @@ { stdenv, fetchFromGitHub, lib -, pkgconfig, autoreconfHook , gtk-doc +, pkg-config, autoreconfHook , gtk-doc +, gobject-introspection , gtkVersion ? "3" , gtk2, libayatana-indicator-gtk2, libdbusmenu-gtk2 , gtk3, libayatana-indicator-gtk3, libdbusmenu-gtk3 @@ -8,24 +9,24 @@ stdenv.mkDerivation rec { pname = "libayatana-appindicator-gtk${gtkVersion}"; - version = "0.5.4"; + version = "0.5.5"; src = fetchFromGitHub { owner = "AyatanaIndicators"; repo = "libayatana-appindicator"; rev = version; - sha256 = "0bqjqb7gabdk7mifk8azi630qw39z978f973fx2ylgdgr4a66j1v"; + sha256 = "1sba0w455rdkadkhxrx4fr63m0d9blsbb1q1hcshxw1k1z2nh1gk"; }; - patchPhase = '' + prePatch = '' substituteInPlace configure.ac \ --replace "codegendir pygtk-2.0" "codegendir pygobject-2.0" ''; - nativeBuildInputs = [ pkgconfig autoreconfHook gtk-doc ]; + nativeBuildInputs = [ pkg-config autoreconfHook gtk-doc gobject-introspection python2 python2Packages.pygtk dbus-glib ]; - buildInputs = [ dbus-glib python2 python2Packages.pygtk ] - ++ lib.lists.optional (gtkVersion == "2") libayatana-indicator-gtk2 + buildInputs = + lib.lists.optional (gtkVersion == "2") libayatana-indicator-gtk2 ++ lib.lists.optional (gtkVersion == "3") libayatana-indicator-gtk3; propagatedBuildInputs = @@ -42,8 +43,8 @@ stdenv.mkDerivation rec { description = "Ayatana Application Indicators Shared Library"; homepage = "https://github.com/AyatanaIndicators/libayatana-appindicator"; changelog = "https://github.com/AyatanaIndicators/libayatana-appindicator/blob/${version}/ChangeLog"; - license = [ licenses.gpl3 licenses.lgpl21 ]; + license = [ licenses.lgpl3Plus licenses.lgpl21Plus ]; maintainers = [ maintainers.nickhu ]; - platforms = platforms.x86_64; + platforms = platforms.linux; }; } diff --git a/pkgs/development/libraries/libayatana-indicator/default.nix b/pkgs/development/libraries/libayatana-indicator/default.nix index 778e06aa95c..dd9bc616944 100644 --- a/pkgs/development/libraries/libayatana-indicator/default.nix +++ b/pkgs/development/libraries/libayatana-indicator/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub, lib -, pkgconfig, autoreconfHook +, pkg-config, autoreconfHook , gtkVersion ? "3" , gtk2 , gtk3 @@ -8,16 +8,16 @@ stdenv.mkDerivation rec { pname = "libayatana-indicator-gtk${gtkVersion}"; - version = "0.6.3"; + version = "0.8.2"; src = fetchFromGitHub { owner = "AyatanaIndicators"; repo = "libayatana-indicator"; rev = version; - sha256 = "1q9wmaw6pckwyrv0s7wkqzm1yrk031pbz4xbr8cwn75ixqyfcb28"; + sha256 = "1wlqm3pj12vgz587a72widbg0vcmm1klsd2lh3mpzfy20m3vjxhj"; }; - nativeBuildInputs = [ pkgconfig autoreconfHook ]; + nativeBuildInputs = [ pkg-config autoreconfHook ]; buildInputs = [ ayatana-ido ] ++ lib.lists.optionals (gtkVersion == "2") [ gtk2 ] @@ -29,8 +29,8 @@ stdenv.mkDerivation rec { description = "Ayatana Indicators Shared Library"; homepage = "https://github.com/AyatanaIndicators/libayatana-indicator"; changelog = "https://github.com/AyatanaIndicators/libayatana-indicator/blob/${version}/ChangeLog"; - license = licenses.gpl3; + license = licenses.gpl3Plus; maintainers = [ maintainers.nickhu ]; - platforms = platforms.x86_64; + platforms = platforms.linux; }; } diff --git a/pkgs/development/libraries/libcec/default.nix b/pkgs/development/libraries/libcec/default.nix index a1c2967dde7..792d899333e 100644 --- a/pkgs/development/libraries/libcec/default.nix +++ b/pkgs/development/libraries/libcec/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl, cmake, pkgconfig, udev, libcec_platform, libraspberrypi ? null }: -let version = "4.0.5"; in +let version = "4.0.7"; in stdenv.mkDerivation { pname = "libcec"; @@ -8,7 +8,7 @@ stdenv.mkDerivation { src = fetchurl { url = "https://github.com/Pulse-Eight/libcec/archive/libcec-${version}.tar.gz"; - sha256 = "0hvp33mq0kg544hw20aq3vy5lxf5zid6gxm3qdga7wxw1r1lkmz4"; + sha256 = "0nii8qh3qrn92g8x3canj4glb2bjn6gc1p3f6hfp59ckd4vjrndw"; }; nativeBuildInputs = [ pkgconfig cmake ]; diff --git a/pkgs/development/libraries/libchop/0001-Fix-RPC-compilation-when-using-libtirpc-rather-than-.patch b/pkgs/development/libraries/libchop/0001-Fix-RPC-compilation-when-using-libtirpc-rather-than-.patch new file mode 100644 index 00000000000..f5a016f63ac --- /dev/null +++ b/pkgs/development/libraries/libchop/0001-Fix-RPC-compilation-when-using-libtirpc-rather-than-.patch @@ -0,0 +1,41 @@ +From 86fd3be1d31d2e7c09603aa3a8966537ac01bb07 Mon Sep 17 00:00:00 2001 +From: Maximilian Bosch +Date: Tue, 11 Aug 2020 20:30:16 +0200 +Subject: [PATCH] Fix RPC compilation when using libtirpc rather than glibc + +--- + src/block-server.c | 3 +++ + utils/chop-block-server.c | 3 +++ + 2 files changed, 6 insertions(+) + +diff --git a/src/block-server.c b/src/block-server.c +index 3f97417..29b299e 100644 +--- a/src/block-server.c ++++ b/src/block-server.c +@@ -18,6 +18,9 @@ + + /* Server-side stubs. */ + ++#include ++#include ++#include + #include + #include + +diff --git a/utils/chop-block-server.c b/utils/chop-block-server.c +index a2076c0..9462f5d 100644 +--- a/utils/chop-block-server.c ++++ b/utils/chop-block-server.c +@@ -19,6 +19,9 @@ + store, e.g. a GDBM block store, and serves it remotely. A lot of code is + borrowed from `chop-archiver.c'. */ + ++#include ++#include ++#include + #include + + #include +-- +2.25.4 + diff --git a/pkgs/development/libraries/libchop/default.nix b/pkgs/development/libraries/libchop/default.nix index 190f122ecfa..d2040b72311 100644 --- a/pkgs/development/libraries/libchop/default.nix +++ b/pkgs/development/libraries/libchop/default.nix @@ -1,6 +1,6 @@ { fetchurl, stdenv, zlib, bzip2, libgcrypt , gdbm, gperf, tdb, gnutls, db, libuuid -, lzo, pkgconfig, guile +, lzo, pkgconfig, guile, rpcsvc-proto, libtirpc }: stdenv.mkDerivation rec { @@ -11,16 +11,19 @@ stdenv.mkDerivation rec { sha256 = "0fpdyxww41ba52d98blvnf543xvirq1v9xz1i3x1gm9lzlzpmc2g"; }; - patches = [ ./gets-undeclared.patch ./size_t.patch ]; + patches = [ ./gets-undeclared.patch ./size_t.patch ./0001-Fix-RPC-compilation-when-using-libtirpc-rather-than-.patch ]; - nativeBuildInputs = [ pkgconfig gperf ]; + nativeBuildInputs = [ pkgconfig gperf rpcsvc-proto ]; + + NIX_CFLAGS_COMPILE = [ "-I${libtirpc.dev}/include/tirpc" ]; + NIX_LDFLAGS = [ "-ltirpc" ]; buildInputs = [ zlib bzip2 lzo libgcrypt gdbm db tdb gnutls libuuid - guile + guile libtirpc ]; doCheck = false; diff --git a/pkgs/development/libraries/libdap/default.nix b/pkgs/development/libraries/libdap/default.nix index bc05e774cd8..a643c25f0bf 100644 --- a/pkgs/development/libraries/libdap/default.nix +++ b/pkgs/development/libraries/libdap/default.nix @@ -18,5 +18,6 @@ stdenv.mkDerivation rec { license = licenses.lgpl2; maintainers = [ maintainers.bzizou ]; platforms = platforms.linux; + broken = true; }; } diff --git a/pkgs/development/libraries/libdbi-drivers/default.nix b/pkgs/development/libraries/libdbi-drivers/default.nix index d321d7d650a..871c9f97167 100644 --- a/pkgs/development/libraries/libdbi-drivers/default.nix +++ b/pkgs/development/libraries/libdbi-drivers/default.nix @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { "--with-dbi-libdir=${libdbi}/lib" ] ++ optionals (libmysqlclient != null) [ "--with-mysql" - "--with-mysql-incdir=${libmysqlclient}/include/mysql" + "--with-mysql-incdir=${getDev libmysqlclient}/include/mysql" "--with-mysql-libdir=${libmysqlclient}/lib/mysql" ] ++ optionals (sqlite != null) [ "--with-sqlite3" diff --git a/pkgs/development/libraries/libde265/default.nix b/pkgs/development/libraries/libde265/default.nix index 7c136dd7805..9d88a61ad10 100644 --- a/pkgs/development/libraries/libde265/default.nix +++ b/pkgs/development/libraries/libde265/default.nix @@ -1,14 +1,14 @@ { stdenv, fetchFromGitHub, autoreconfHook, pkgconfig }: stdenv.mkDerivation rec { - version = "1.0.6"; + version = "1.0.7"; pname = "libde265"; src = fetchFromGitHub { owner = "strukturag"; repo = "libde265"; rev = "v${version}"; - sha256 = "0ipccyavlgf7hfzx1g8bvzg62xq10vcxvwgq70r3z3j6mdvmrzjp"; + sha256 = "0x7g9771457z49qvzpk4iswfhq018i0mzsflv9gg8if5hjqhfdp0"; }; nativeBuildInputs = [ autoreconfHook pkgconfig ]; diff --git a/pkgs/development/libraries/libdynd/default.nix b/pkgs/development/libraries/libdynd/default.nix index eec982aeeb0..cc9018421fe 100644 --- a/pkgs/development/libraries/libdynd/default.nix +++ b/pkgs/development/libraries/libdynd/default.nix @@ -32,7 +32,7 @@ stdenv.mkDerivation { outputDoc = "dev"; meta = with stdenv.lib; { - description = "C++ dynamic ndarray library, with Python exposure."; + description = "C++ dynamic ndarray library, with Python exposure"; homepage = "http://libdynd.org"; license = licenses.bsd2; platforms = platforms.linux; diff --git a/pkgs/development/libraries/liberfa/default.nix b/pkgs/development/libraries/liberfa/default.nix index 097b0b85e3e..a1ca15536da 100644 --- a/pkgs/development/libraries/liberfa/default.nix +++ b/pkgs/development/libraries/liberfa/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "erfa"; - version = "1.7.0"; + version = "1.7.1"; buildInputs = [ autoreconfHook ]; @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { owner = "liberfa"; repo = "erfa"; rev = "v${version}"; - sha256 = "1z4k2phrw6wwi0kax6ac80jk9c036gi7pmhmg6gaf3lk81k6xz2r"; + sha256 = "0j7v9y7jsw9vjmhdpksq44ah2af10b9gl1vfm8riw178lvf246wg"; }; configureFlags = [ "--enable-shared" ]; diff --git a/pkgs/development/libraries/libfido2/default.nix b/pkgs/development/libraries/libfido2/default.nix index b062b10732e..48b457b09de 100644 --- a/pkgs/development/libraries/libfido2/default.nix +++ b/pkgs/development/libraries/libfido2/default.nix @@ -11,10 +11,10 @@ stdenv.mkDerivation rec { pname = "libfido2"; - version = "1.4.0"; + version = "1.5.0"; src = fetchurl { url = "https://developers.yubico.com/${pname}/Releases/${pname}-${version}.tar.gz"; - sha256 = "0v1a3n0qljmrp8y9pmnmbsdsy79l3z84qmhyjx50xdsbgnz1z4md"; + sha256 = "08iizxq3w8mpkwfrfpl59csffc20yz8x398bl3kf23rrr4izk42r"; }; nativeBuildInputs = [ cmake pkgconfig ]; @@ -22,14 +22,6 @@ stdenv.mkDerivation rec { buildInputs = [ hidapi libcbor openssl ] ++ stdenv.lib.optionals stdenv.isLinux [ udev ]; - patches = [ - # make build reproducible - (fetchpatch { - url = "https://github.com/Yubico/libfido2/commit/e79f7d7996e70d6b2ae9826fce81d61659cab4f6.patch"; - sha256 = "0jwg69f95qqf0ym24q1ka50d3d3338cyw4fdfzpw4sab0shiaq9v"; - }) - ]; - cmakeFlags = [ "-DUDEV_RULES_DIR=${placeholder "out"}/etc/udev/rules.d" "-DUSE_HIDAPI=1" diff --git a/pkgs/development/libraries/libfishsound/default.nix b/pkgs/development/libraries/libfishsound/default.nix index 3843f4a97ce..23d828033e3 100644 --- a/pkgs/development/libraries/libfishsound/default.nix +++ b/pkgs/development/libraries/libfishsound/default.nix @@ -14,7 +14,8 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://xiph.org/fishsound/"; - description = ''libfishsound by itself is designed to handle raw codec streams from a lower level layer such as UDP datagrams. When these codecs are used in files, they are commonly encapsulated in Ogg to produce Ogg FLAC, Speex and Ogg Vorbis files. + description = "A simple programming interface for decoding and encoding audio data using Xiph.org codecs (FLAC, Speex and Vorbis)"; + longDescription = ''libfishsound by itself is designed to handle raw codec streams from a lower level layer such as UDP datagrams. When these codecs are used in files, they are commonly encapsulated in Ogg to produce Ogg FLAC, Speex and Ogg Vorbis files. libfishsound is a wrapper around the existing codec libraries and provides a consistent, higher-level programming interface. It has been designed for use in a wide variety of applications; it has no direct dependencies on Ogg encapsulation, though it is most commonly used in conjunction with liboggz to decode or encode FLAC, Speex or Vorbis audio tracks in Ogg files, including Ogg Theora and Annodex. diff --git a/pkgs/development/libraries/libguestfs/default.nix b/pkgs/development/libraries/libguestfs/default.nix index 6e6b892c212..b875b357903 100644 --- a/pkgs/development/libraries/libguestfs/default.nix +++ b/pkgs/development/libraries/libguestfs/default.nix @@ -3,6 +3,7 @@ , acl, libcap, libcap_ng, libconfig, systemd, fuse, yajl, libvirt, hivex, db , gmp, readline, file, numactl, xen, libapparmor, jansson , getopt, perlPackages, ocamlPackages +, libtirpc , appliance ? null , javaSupport ? false, jdk ? null }: @@ -24,6 +25,7 @@ stdenv.mkDerivation rec { cdrkit flex bison qemu pcre augeas libxml2 acl libcap libcap_ng libconfig systemd fuse yajl libvirt gmp readline file hivex db numactl xen libapparmor getopt perlPackages.ModuleBuild + libtirpc ] ++ (with perlPackages; [ perl libintl_perl GetoptLong SysVirt ]) ++ (with ocamlPackages; [ ocaml findlib ocamlbuild ocaml_libvirt gettext-stub ounit ]) ++ stdenv.lib.optional javaSupport jdk; @@ -89,5 +91,7 @@ stdenv.mkDerivation rec { homepage = "https://libguestfs.org/"; maintainers = with maintainers; [offline]; platforms = platforms.linux; + # this is to avoid "output size exceeded" + hydraPlatforms = if appliance != null then appliance.meta.hydraPlatforms else platforms.linux; }; } diff --git a/pkgs/development/libraries/libheif/default.nix b/pkgs/development/libraries/libheif/default.nix index fd527eb415b..4a5f6ab3bd8 100644 --- a/pkgs/development/libraries/libheif/default.nix +++ b/pkgs/development/libraries/libheif/default.nix @@ -1,8 +1,9 @@ -{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, libde265, x265, libpng, libjpeg }: +{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, libde265, x265, libpng, + libjpeg, libaom }: stdenv.mkDerivation rec { pname = "libheif"; - version = "1.8.0"; + version = "1.9.1"; outputs = [ "bin" "out" "dev" "man" ]; @@ -10,11 +11,12 @@ stdenv.mkDerivation rec { owner = "strukturag"; repo = "libheif"; rev = "v${version}"; - sha256 = "15az44qdqp2vncdfv1bzdl30977kvqxcb2bhx4x3q6vcxnm1xfgg"; + sha256 = "0hjs1i076jmy4ryj8y2zs293wx53kzg38y8i42cbcsqydvsdp6hz"; }; nativeBuildInputs = [ autoreconfHook pkgconfig ]; - buildInputs = [ libde265 x265 libpng libjpeg ]; + buildInputs = [ libde265 x265 libpng libjpeg libaom ]; + # TODO: enable dav1d and rav1e codecs when libheif can find them via pkg-config enableParallelBuilding = true; diff --git a/pkgs/development/libraries/libipfix/default.nix b/pkgs/development/libraries/libipfix/default.nix index 1b8aef201af..69918b5d36c 100644 --- a/pkgs/development/libraries/libipfix/default.nix +++ b/pkgs/development/libraries/libipfix/default.nix @@ -9,7 +9,7 @@ stdenv.mkDerivation { }; meta = with stdenv.lib; { homepage = "http://libipfix.sourceforge.net/"; - description = "The libipfix C-library implements the IPFIX protocol defined by the IP Flow Information Export working group of the IETF."; + description = "The libipfix C-library implements the IPFIX protocol defined by the IP Flow Information Export working group of the IETF"; license = licenses.lgpl3; platforms = platforms.linux; maintainers = with maintainers; [ lewo ]; diff --git a/pkgs/development/libraries/libjpeg-turbo/default.nix b/pkgs/development/libraries/libjpeg-turbo/default.nix index 36838341fe2..2a25a565a8f 100644 --- a/pkgs/development/libraries/libjpeg-turbo/default.nix +++ b/pkgs/development/libraries/libjpeg-turbo/default.nix @@ -1,30 +1,18 @@ -{ stdenv, fetchurl, fetchpatch, cmake, nasm, enableStatic ? false, enableShared ? true }: +{ stdenv, fetchFromGitHub, cmake, nasm, enableStatic ? false, enableShared ? true }: stdenv.mkDerivation rec { pname = "libjpeg-turbo"; - version = "2.0.4"; + version = "2.0.5"; - src = fetchurl { - url = "mirror://sourceforge/${pname}/${pname}-${version}.tar.gz"; - sha256 = "01ill8bgjyk582wipx7sh7gj2nidylpbzvwhx0wkcm6mxx3qbp9k"; + src = fetchFromGitHub { + owner = "libjpeg-turbo"; + repo = "libjpeg-turbo"; + rev = version; + sha256 = "0p32yivybxdicm01qa9h1vj91apygzxpvnklrjmbx8z9z2l3qxc9"; }; patches = - [ - # Fixes race in tests that causes "jpegtran-shared-icc" to fail - # https://github.com/libjpeg-turbo/libjpeg-turbo/pull/425 - (fetchpatch { - url = "https://github.com/libjpeg-turbo/libjpeg-turbo/commit/a2291b252de1413a13db61b21863ae7aea0946f3.patch"; - sha256 = "0nc5vcch5h52gpi07h08zf8br58q8x81q2hv871hrn0dinb53vym"; - }) - - (fetchpatch { - name = "cve-2020-13790.patch"; - url = "https://github.com/libjpeg-turbo/libjpeg-turbo/commit/3de15e0c344d.diff"; - sha256 = "0hm5i6qir5w3zxb0xvqdh4jyvbfg7xnd28arhyfsaclfz9wdb0pb"; - }) - ] ++ stdenv.lib.optional (stdenv.hostPlatform.libc or null == "msvcrt") ./mingw-boolean.patch; @@ -41,7 +29,7 @@ stdenv.mkDerivation rec { installCheckTarget = "test"; meta = with stdenv.lib; { - homepage = "http://libjpeg-turbo.virtualgl.org/"; + homepage = "https://libjpeg-turbo.org/"; description = "A faster (using SIMD) libjpeg implementation"; license = licenses.ijg; # and some parts under other BSD-style licenses maintainers = with maintainers; [ vcunat colemickens ]; diff --git a/pkgs/development/libraries/libmediainfo/default.nix b/pkgs/development/libraries/libmediainfo/default.nix index e6650db85cc..31d64101e6b 100644 --- a/pkgs/development/libraries/libmediainfo/default.nix +++ b/pkgs/development/libraries/libmediainfo/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, autoreconfHook, pkgconfig, libzen, zlib }: stdenv.mkDerivation rec { - version = "20.08"; + version = "20.09"; pname = "libmediainfo"; src = fetchurl { url = "https://mediaarea.net/download/source/libmediainfo/${version}/libmediainfo_${version}.tar.xz"; - sha256 = "19n8h9jq42b6r3dbag77fzwfksfywszmzpi636w87fvc1nqldlqj"; + sha256 = "15ni9pnch6688m72swwax109a7mg4a08yx75qknrx7qa6dbyhz6h"; }; nativeBuildInputs = [ autoreconfHook pkgconfig ]; diff --git a/pkgs/development/libraries/libmysqlconnectorcpp/default.nix b/pkgs/development/libraries/libmysqlconnectorcpp/default.nix index ecec1e79492..6c4874112b7 100644 --- a/pkgs/development/libraries/libmysqlconnectorcpp/default.nix +++ b/pkgs/development/libraries/libmysqlconnectorcpp/default.nix @@ -34,7 +34,7 @@ stdenv.mkDerivation rec { meta = { homepage = "https://dev.mysql.com/downloads/connector/cpp/"; - description = "C++ library for connecting to mysql servers."; + description = "C++ library for connecting to mysql servers"; license = stdenv.lib.licenses.gpl2; platforms = stdenv.lib.platforms.unix; }; diff --git a/pkgs/development/libraries/libndctl/default.nix b/pkgs/development/libraries/libndctl/default.nix index 7c4c49baffa..be5c75806d8 100644 --- a/pkgs/development/libraries/libndctl/default.nix +++ b/pkgs/development/libraries/libndctl/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchFromGitHub, autoreconfHook , asciidoctor, pkgconfig, xmlto, docbook_xsl, docbook_xml_dtd_45, libxslt -, json_c, kmod, which, utillinux, systemd, keyutils +, json_c, kmod, which, utillinux, udev, keyutils }: stdenv.mkDerivation rec { @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { ]; buildInputs = - [ json_c kmod utillinux systemd keyutils + [ json_c kmod utillinux udev keyutils ]; configureFlags = diff --git a/pkgs/development/libraries/libnetfilter_acct/default.nix b/pkgs/development/libraries/libnetfilter_acct/default.nix index d33782ad7e5..268da3813e7 100644 --- a/pkgs/development/libraries/libnetfilter_acct/default.nix +++ b/pkgs/development/libraries/libnetfilter_acct/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "http://www.netfilter.org/projects/libnetfilter_acct/"; - description = "Userspace library providing interface to extended accounting infrastructure."; + description = "Userspace library providing interface to extended accounting infrastructure"; license = licenses.gpl2; platforms = platforms.linux; }; diff --git a/pkgs/development/libraries/libnetfilter_queue/default.nix b/pkgs/development/libraries/libnetfilter_queue/default.nix index 55e07c03b28..7a079616627 100644 --- a/pkgs/development/libraries/libnetfilter_queue/default.nix +++ b/pkgs/development/libraries/libnetfilter_queue/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, pkgconfig, libmnl, libnfnetlink }: stdenv.mkDerivation rec { - version = "1.0.4"; + version = "1.0.5"; pname = "libnetfilter_queue"; src = fetchurl { url = "https://www.netfilter.org/projects/libnetfilter_queue/files/${pname}-${version}.tar.bz2"; - sha256 = "0w7s6g8bikch1m4hnxdakpkwgrkw64ikb6wb4v4zvgyiywrk5yai"; + sha256 = "1xdra6i4p8jkv943ygjw646qx8df27f7p5852kc06vjx608krzzr"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/development/libraries/libplacebo/default.nix b/pkgs/development/libraries/libplacebo/default.nix index dc3e5e30c74..0b36efa189b 100644 --- a/pkgs/development/libraries/libplacebo/default.nix +++ b/pkgs/development/libraries/libplacebo/default.nix @@ -31,10 +31,6 @@ stdenv.mkDerivation rec { url = "https://code.videolan.org/videolan/libplacebo/-/commit/523056828ab86c2f17ea65f432424d48b6fdd389.patch"; sha256 = "051vhd0l3yad1fzn5zayi08kqs9an9j8p7m63kgqyfv1ksnydpcs"; }) - (fetchpatch { - url = "https://code.videolan.org/videolan/libplacebo/-/commit/82e3be1839379791b58e98eb049415b42888d5b0.patch"; - sha256 = "0nklj9gfiwkbbj6wfm1ck33hphaxrvzb84c4h2nfj88bapnlm90l"; - }) ]; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/libpsl/default.nix b/pkgs/development/libraries/libpsl/default.nix index fdc352869f0..fb9e5b12bc6 100644 --- a/pkgs/development/libraries/libpsl/default.nix +++ b/pkgs/development/libraries/libpsl/default.nix @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { lzip pkgconfig python3 - valgrind + (stdenv.lib.optionalString (!stdenv.isDarwin) valgrind) libxslt ]; diff --git a/pkgs/development/libraries/libquotient/default.nix b/pkgs/development/libraries/libquotient/default.nix index 9ece2c13bd2..c1cd3ca8d59 100644 --- a/pkgs/development/libraries/libquotient/default.nix +++ b/pkgs/development/libraries/libquotient/default.nix @@ -2,13 +2,13 @@ mkDerivation rec { pname = "libquotient"; - version = "0.5.3.2"; + version = "0.6.0"; src = fetchFromGitHub { owner = "quotient-im"; repo = "libQuotient"; rev = version; - sha256 = "0gkwr3yw6k2m0j8cc085b5p2q788rf5nhp1p5hc5d55pc7mci2qs"; + sha256 = "1wpjrihi2gci3kwq9b3i3avd6bk3x7g22r0n6hvlphapkaf1ig6y"; }; buildInputs = [ qtbase qtmultimedia ]; diff --git a/pkgs/development/libraries/libraw/default.nix b/pkgs/development/libraries/libraw/default.nix index b190d36acb5..f59f63c38ac 100644 --- a/pkgs/development/libraries/libraw/default.nix +++ b/pkgs/development/libraries/libraw/default.nix @@ -1,25 +1,29 @@ -{ stdenv, fetchurl, lcms2, pkgconfig }: +{ stdenv, fetchFromGitHub, autoreconfHook, lcms2, pkgconfig }: stdenv.mkDerivation rec { pname = "libraw"; - version = "0.20.0"; + version = "0.20.2"; - src = fetchurl { - url = "https://www.libraw.org/data/LibRaw-${version}.tar.gz"; - sha256 = "18wlsvj6c1rv036ph3695kknpgzc3lk2ikgshy8417yfl8ykh2hz"; + src = fetchFromGitHub { + owner = "LibRaw"; + repo = "LibRaw"; + rev = version; + sha256 = "16nm4r2l5501c9zvz25pzajq5id592jhn068scjxhr8np2cblybc"; }; outputs = [ "out" "lib" "dev" "doc" ]; propagatedBuildInputs = [ lcms2 ]; - nativeBuildInputs = [ pkgconfig ]; + nativeBuildInputs = [ autoreconfHook pkgconfig ]; - meta = { + enableParallelBuilding = true; + + meta = with stdenv.lib; { description = "Library for reading RAW files obtained from digital photo cameras (CRW/CR2, NEF, RAF, DNG, and others)"; homepage = "https://www.libraw.org/"; - license = stdenv.lib.licenses.gpl2Plus; - platforms = stdenv.lib.platforms.unix; + license = licenses.gpl2Plus; + platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/libroxml/default.nix b/pkgs/development/libraries/libroxml/default.nix index 3993451e19f..b72ffb5b7ec 100644 --- a/pkgs/development/libraries/libroxml/default.nix +++ b/pkgs/development/libraries/libroxml/default.nix @@ -8,7 +8,7 @@ stdenv.mkDerivation { }; meta = with stdenv.lib; { homepage = "http://www.libroxml.net/"; - description = "This library is minimum, easy-to-use, C implementation for xml file parsing."; + description = "This library is minimum, easy-to-use, C implementation for xml file parsing"; license = licenses.lgpl3; platforms = platforms.unix; maintainers = with maintainers; [ mpickering ]; diff --git a/pkgs/development/libraries/libsoup/default.nix b/pkgs/development/libraries/libsoup/default.nix index a497661725b..9f4a5bac25b 100644 --- a/pkgs/development/libraries/libsoup/default.nix +++ b/pkgs/development/libraries/libsoup/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl, glib, libxml2, meson, ninja, pkgconfig, gnome3 , gnomeSupport ? true, sqlite, glib-networking, gobject-introspection, vala -, libpsl, python3, brotli }: +, libpsl, python3, brotli, lib }: stdenv.mkDerivation rec { pname = "libsoup"; @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { "-Dtls_check=false" # glib-networking is a runtime dependency, not a compile-time dependency "-Dgssapi=disabled" "-Dvapi=enabled" - "-Dgnome=${if gnomeSupport then "true" else "false"}" + "-Dgnome=${lib.boolToString gnomeSupport}" "-Dntlm=disabled" ]; diff --git a/pkgs/development/libraries/libstroke/default.nix b/pkgs/development/libraries/libstroke/default.nix index 534ad7afc71..e97b96d71d0 100644 --- a/pkgs/development/libraries/libstroke/default.nix +++ b/pkgs/development/libraries/libstroke/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation { ''; meta = { - description = "Libstroke, a library for simple gesture recognition"; + description = "A library for simple gesture recognition"; homepage = "https://web.archive.org/web/20161204100704/http://etla.net/libstroke/"; license = stdenv.lib.licenses.gpl2; diff --git a/pkgs/development/libraries/libthreadar/default.nix b/pkgs/development/libraries/libthreadar/default.nix index ed19fab6d99..96c0418f74c 100644 --- a/pkgs/development/libraries/libthreadar/default.nix +++ b/pkgs/development/libraries/libthreadar/default.nix @@ -24,7 +24,8 @@ stdenv.mkDerivation rec { meta = { homepage = "http://libthreadar.sourceforge.net/"; - description = '' + description = "A C++ library that provides several classes to manipulate threads"; + longDescription = '' Libthreadar is a C++ library providing a small set of C++ classes to manipulate threads in a very simple and efficient way from your C++ code. ''; diff --git a/pkgs/development/libraries/libui/default.nix b/pkgs/development/libraries/libui/default.nix index c009c786672..5cb19f863cc 100644 --- a/pkgs/development/libraries/libui/default.nix +++ b/pkgs/development/libraries/libui/default.nix @@ -47,7 +47,7 @@ stdenv.mkDerivation { meta = with stdenv.lib; { homepage = "https://github.com/andlabs/libui"; - description = "Simple and portable (but not inflexible) GUI library in C that uses the native GUI technologies of each platform it supports."; + description = "Simple and portable (but not inflexible) GUI library in C that uses the native GUI technologies of each platform it supports"; license = licenses.mit; platforms = platforms.unix; }; diff --git a/pkgs/development/libraries/liburing/default.nix b/pkgs/development/libraries/liburing/default.nix index 1839c0ec187..938846ace54 100644 --- a/pkgs/development/libraries/liburing/default.nix +++ b/pkgs/development/libraries/liburing/default.nix @@ -28,6 +28,9 @@ stdenv.mkDerivation rec { ) ''; + # Doesn't recognize platform flags + configurePlatforms = []; + outputs = [ "out" "bin" "dev" "man" ]; postInstall = diff --git a/pkgs/development/libraries/libuv/default.nix b/pkgs/development/libraries/libuv/default.nix index cf73a64f675..fa661446b9a 100644 --- a/pkgs/development/libraries/libuv/default.nix +++ b/pkgs/development/libraries/libuv/default.nix @@ -1,14 +1,14 @@ { stdenv, lib, fetchFromGitHub, autoconf, automake, libtool, pkgconfig, ApplicationServices, CoreServices }: stdenv.mkDerivation rec { - version = "1.38.1"; + version = "1.40.0"; pname = "libuv"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "0cvabjhi53qw94zyjkqamx0c607ayydfb4f3djx2gj8ab2p7s29n"; + sha256 = "1hd0x6i80ca3j0c3a7laygzab5qkgxjkz692jwzrsinsfhvbq0pg"; }; postPatch = let @@ -66,7 +66,8 @@ stdenv.mkDerivation rec { meta = with lib; { description = "A multi-platform support library with a focus on asynchronous I/O"; - homepage = "https://github.com/libuv/libuv"; + homepage = "https://libuv.org/"; + changelog = "https://github.com/libuv/libuv/blob/v${version}/ChangeLog"; maintainers = with maintainers; [ cstrahan ]; platforms = with platforms; linux ++ darwin; license = with licenses; [ mit isc bsd2 bsd3 cc-by-40 ]; diff --git a/pkgs/development/libraries/libva/default.nix b/pkgs/development/libraries/libva/default.nix index 7f690f0997b..d3578283737 100644 --- a/pkgs/development/libraries/libva/default.nix +++ b/pkgs/development/libraries/libva/default.nix @@ -7,14 +7,13 @@ stdenv.mkDerivation rec { name = "libva-${lib.optionalString minimal "minimal-"}${version}"; - version = "2.8.0"; # Also update the hash for libva-utils! + version = "2.9.0"; # Also update the hash for libva-utils! - # update libva-utils and vaapiIntel as well src = fetchFromGitHub { owner = "intel"; repo = "libva"; rev = version; - sha256 = "190cq173jzp5rkrczi8gzbwa0y3xk253v4wd205a5ilfngm7srns"; + sha256 = "17m8k8fn41vzi1lzh9idf2mn4x73bwlkw60kl5zj396kpw4n1z1r"; }; outputs = [ "dev" "out" ]; diff --git a/pkgs/development/libraries/libva/utils.nix b/pkgs/development/libraries/libva/utils.nix index 5b9f4cdd8aa..71a1d085d12 100644 --- a/pkgs/development/libraries/libva/utils.nix +++ b/pkgs/development/libraries/libva/utils.nix @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { owner = "intel"; repo = "libva-utils"; rev = version; - sha256 = "081hw2jnj64bpqwh9p41n5caqzm6dnj1ggnvvc5wrf4m2z1h2bjb"; + sha256 = "1xylc940ffhqay9lyy48872cfw61ziky8dw21vm69psngfz3zs9n"; }; nativeBuildInputs = [ meson ninja pkg-config ]; diff --git a/pkgs/development/libraries/libvirt/5.9.0.nix b/pkgs/development/libraries/libvirt/5.9.0.nix index 514cf24f66e..722c4a53b8f 100644 --- a/pkgs/development/libraries/libvirt/5.9.0.nix +++ b/pkgs/development/libraries/libvirt/5.9.0.nix @@ -4,7 +4,7 @@ , iproute, iptables, readline, lvm2, utillinux, systemd, libpciaccess, gettext , libtasn1, ebtables, libgcrypt, yajl, pmutils, libcap_ng, libapparmor , dnsmasq, libnl, libpcap, libxslt, xhtml1, numad, numactl, perlPackages -, curl, libiconv, gmp, zfs, parted, bridge-utils, dmidecode, glib +, curl, libiconv, gmp, zfs, parted, bridge-utils, dmidecode, glib, rpcsvc-proto, libtirpc , enableXen ? false, xen ? null , enableIscsi ? false, openiscsi , enableCeph ? false, ceph @@ -33,10 +33,10 @@ in stdenv.mkDerivation rec { fetchSubmodules = true; }; - nativeBuildInputs = [ makeWrapper pkgconfig ]; + nativeBuildInputs = [ makeWrapper pkgconfig rpcsvc-proto ]; buildInputs = [ libxml2 gnutls perl python2 readline gettext libtasn1 libgcrypt yajl - libxslt xhtml1 perlPackages.XMLXPath curl libpcap glib + libxslt xhtml1 perlPackages.XMLXPath curl libpcap glib libtirpc ] ++ optionals (!buildFromTarball) [ libtool autoconf automake ] ++ optionals stdenv.isLinux [ @@ -76,6 +76,7 @@ in stdenv.mkDerivation rec { "QEMU_BRIDGE_HELPER=/run/wrappers/bin/qemu-bridge-helper" "QEMU_PR_HELPER=/run/libvirt/nix-helpers/qemu-pr-helper" "EBTABLES_PATH=${ebtables}/bin/ebtables-legacy" + "CFLAGS=-I${libtirpc.dev}/include/tirpc" "--with-attr" "--with-apparmor" "--with-secdriver-apparmor" diff --git a/pkgs/development/libraries/libvirt/default.nix b/pkgs/development/libraries/libvirt/default.nix index 27f345a9c83..642baba4376 100644 --- a/pkgs/development/libraries/libvirt/default.nix +++ b/pkgs/development/libraries/libvirt/default.nix @@ -4,7 +4,7 @@ , iproute, iptables, readline, lvm2, utillinux, systemd, libpciaccess, gettext , libtasn1, ebtables, libgcrypt, yajl, pmutils, libcap_ng, libapparmor , dnsmasq, libnl, libpcap, libxslt, xhtml1, numad, numactl, perlPackages -, curl, libiconv, gmp, zfs, parted, bridge-utils, dmidecode, dbus +, curl, libiconv, gmp, zfs, parted, bridge-utils, dmidecode, dbus, libtirpc, rpcsvc-proto, darwin , enableXen ? false, xen ? null , enableIscsi ? false, openiscsi , enableCeph ? false, ceph @@ -17,29 +17,38 @@ let buildFromTarball = stdenv.isDarwin; in stdenv.mkDerivation rec { pname = "libvirt"; - version = "6.3.0"; + version = "6.6.0"; src = if buildFromTarball then fetchurl { - url = "http://libvirt.org/sources/${pname}-${version}.tar.xz"; - sha256 = "1xcng497hs1gary3pz3fp590a4r1kqs4d0d8k5p370j0scw981kl"; + url = "https://libvirt.org/sources/${pname}-${version}.tar.xz"; + sha256 = "1y8y13zvh820f4b15287wb77wq7ra7kbfnpblzhm1dki5pfjvrcl"; } else fetchgit { - url = "git://libvirt.org/libvirt.git"; + url = "https://gitlab.com/libvirt/libvirt.git"; rev = "v${version}"; - sha256 = "129b3p72jlb40dsidak3nvpssv75xx2v99y63gzp5k074fp8y8x4"; + sha256 = "09hsbm2qmx0jfmm418rf5lx374g85bwgg0kzlga62x5180jhsssn"; fetchSubmodules = true; }; - nativeBuildInputs = [ makeWrapper pkgconfig docutils ] ++ optionals (!buildFromTarball) [ autoreconfHook ]; + nativeBuildInputs = [ + makeWrapper pkgconfig docutils + ] ++ optionals (!buildFromTarball) [ + autoreconfHook + ] ++ optional (!stdenv.isDarwin) [ + rpcsvc-proto + ] ++ optionals stdenv.isDarwin [ + darwin.developer_cmds # needed for rpcgen + ]; + buildInputs = [ libxml2 gnutls perl python2 readline gettext libtasn1 libgcrypt yajl libxslt xhtml1 perlPackages.XMLXPath curl libpcap glib dbus ] ++ optionals stdenv.isLinux [ libpciaccess lvm2 utillinux systemd libnl numad zfs - libapparmor libcap_ng numactl attr parted + libapparmor libcap_ng numactl attr parted libtirpc ] ++ optionals (enableXen && stdenv.isLinux && stdenv.isx86_64) [ xen ] ++ optionals enableIscsi [ @@ -65,7 +74,7 @@ in stdenv.mkDerivation rec { dontAddDisableDepTrack = true; configureFlags = [ - "--with-runstatedir=/run" # TODO: remove when autoconf 1.70 is released + "--with-runstatedir=/run" # TODO: remove when autoconf 2.70 is released "--localstatedir=/var" "--sysconfdir=/var/lib" "--with-libpcap" @@ -80,6 +89,7 @@ in stdenv.mkDerivation rec { "QEMU_BRIDGE_HELPER=/run/wrappers/bin/qemu-bridge-helper" "QEMU_PR_HELPER=/run/libvirt/nix-helpers/qemu-pr-helper" "EBTABLES_PATH=${ebtables}/bin/ebtables-legacy" + "CFLAGS=-I${libtirpc.dev}/include/tirpc" "--with-attr" "--with-apparmor" "--with-secdriver-apparmor" @@ -124,10 +134,8 @@ in stdenv.mkDerivation rec { enableParallelBuilding = true; - NIX_CFLAGS_COMPILE = "-fno-stack-protector"; - meta = { - homepage = "http://libvirt.org/"; + homepage = "https://libvirt.org/"; repositories.git = "git://libvirt.org/libvirt.git"; description = '' A toolkit to interact with the virtualization capabilities of recent diff --git a/pkgs/development/libraries/libvmi/default.nix b/pkgs/development/libraries/libvmi/default.nix index e49ab9b38a0..1603d32ba79 100644 --- a/pkgs/development/libraries/libvmi/default.nix +++ b/pkgs/development/libraries/libvmi/default.nix @@ -46,6 +46,6 @@ stdenv.mkDerivation rec { ''; license = with licenses; [ gpl3 lgpl3 ]; platforms = platforms.linux; - maintainers = with maintainers; [ lschuermann ]; + maintainers = with maintainers; [ matthiasbeyer ]; }; } diff --git a/pkgs/development/libraries/libvorbis/default.nix b/pkgs/development/libraries/libvorbis/default.nix index 28c5536d626..2a9f97cf67f 100644 --- a/pkgs/development/libraries/libvorbis/default.nix +++ b/pkgs/development/libraries/libvorbis/default.nix @@ -1,28 +1,15 @@ -{ stdenv, fetchurl, libogg, pkgconfig, fetchpatch }: +{ stdenv, fetchurl, libogg, pkgconfig }: stdenv.mkDerivation rec { - name = "libvorbis-1.3.6"; + name = "libvorbis-1.3.7"; src = fetchurl { url = "http://downloads.xiph.org/releases/vorbis/${name}.tar.xz"; - sha256 = "05dlzjkdpv46zb837wysxqyn8l636x3dw8v8ymlrwz2fg1dbn05g"; + sha256 = "0jwmf87x5sdis64rbv0l87mdpah1rbilkkxszipbzg128f9w8g5k"; }; outputs = [ "out" "dev" "doc" ]; - patches = [ - (fetchpatch { - url = "https://gitlab.xiph.org/xiph/vorbis/commit/018ca26dece618457dd13585cad52941193c4a25.patch"; - sha256 = "18k4vp0nmrxxpis641ylnw6dgwxrymh5bf74njr6v8dizmmz1bkj"; - name = "CVE-2017-14160+CVE-2018-10393.patch"; - }) - (fetchpatch { - url = "https://gitlab.xiph.org/xiph/vorbis/commit/112d3bd0aaacad51305e1464d4b381dabad0e88b.diff"; - sha256 = "1k77y3q36npy8mkkz40f6cb46l2ldrwyrd191m29s8rnbhnafdf7"; - name = "CVE-2018-10392.patch"; - }) - ]; - nativeBuildInputs = [ pkgconfig ]; propagatedBuildInputs = [ libogg ]; diff --git a/pkgs/development/libraries/libxls/default.nix b/pkgs/development/libraries/libxls/default.nix index 192e732b5c0..00300899589 100644 --- a/pkgs/development/libraries/libxls/default.nix +++ b/pkgs/development/libraries/libxls/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "libxls"; - version = "1.6.0"; + version = "1.6.1"; src = fetchurl { url = "https://github.com/libxls/libxls/releases/download/v${version}/libxls-${version}.tar.gz"; - sha256 = "1m3acryv0l4zkj0w3h8vf23rfklschqcbaf484qms2lrx8gakvws"; + sha256 = "1y7wk55blk16hmvf9dz5ci84hlhv6pw6mnr1mfnibfw3gsxmzhyv"; }; nativeBuildInputs = [ unzip ]; diff --git a/pkgs/development/libraries/martyr/default.nix b/pkgs/development/libraries/martyr/default.nix index 4254bfe82ea..51fd6962e70 100644 --- a/pkgs/development/libraries/martyr/default.nix +++ b/pkgs/development/libraries/martyr/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { ''; meta = { - description = "Martyr is a Java framework around the IRC protocol to allow application writers easy manipulation of the protocol and client state"; + description = "Java framework around the IRC protocol to allow application writers easy manipulation of the protocol and client state"; homepage = "http://martyr.sourceforge.net/"; license = stdenv.lib.licenses.lgpl21; }; diff --git a/pkgs/development/libraries/matio/default.nix b/pkgs/development/libraries/matio/default.nix index e12280a088b..7bcef2b6553 100644 --- a/pkgs/development/libraries/matio/default.nix +++ b/pkgs/development/libraries/matio/default.nix @@ -1,9 +1,9 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "matio-1.5.17"; + name = "matio-1.5.18"; src = fetchurl { url = "mirror://sourceforge/matio/${name}.tar.gz"; - sha256 = "00644612zhn53j25vj50q73kmjcrsns2lnmy99y2kavhsckmaiay"; + sha256 = "09gy507zm1gxxyxf5qapzgars51pm16wis7lqqf84kc57ak73baz"; }; meta = with stdenv.lib; { diff --git a/pkgs/development/libraries/mesa/default.nix b/pkgs/development/libraries/mesa/default.nix index cf452fded14..aeeb0514fab 100644 --- a/pkgs/development/libraries/mesa/default.nix +++ b/pkgs/development/libraries/mesa/default.nix @@ -31,7 +31,7 @@ with stdenv.lib; let # Release calendar: https://www.mesa3d.org/release-calendar.html # Release frequency: https://www.mesa3d.org/releasing.html#schedule - version = "20.1.7"; + version = "20.1.9"; branch = versions.major version; in @@ -46,7 +46,7 @@ stdenv.mkDerivation { "ftp://ftp.freedesktop.org/pub/mesa/${version}/mesa-${version}.tar.xz" "ftp://ftp.freedesktop.org/pub/mesa/older-versions/${branch}.x/${version}/mesa-${version}.tar.xz" ]; - sha256 = "1252mgwiy05nz8mm4gjkzmnjfvdz5yv1shnsr837cdnan86dvsad"; + sha256 = "10kk8a8k7f4ip8yaiqdyrx162nbw8pw4h3b4hs4ha8mpd43wlldj"; }; prePatch = "patchShebangs ."; @@ -129,7 +129,7 @@ stdenv.mkDerivation { "-Domx-libs-path=${placeholder "drivers"}/lib/bellagio" "-Dva-libs-path=${placeholder "drivers"}/lib/dri" "-Dd3d-drivers-path=${placeholder "drivers"}/lib/d3d" - "-Dgallium-nine=${if enableGalliumNine then "true" else "false"}" # Direct3D in Wine + "-Dgallium-nine=${boolToString enableGalliumNine}" # Direct3D in Wine "-Dosmesa=${if enableOSMesa then "gallium" else "none"}" # used by wine ] ++ optionals stdenv.isLinux [ "-Dglvnd=true" @@ -229,7 +229,7 @@ stdenv.mkDerivation { inherit (libglvnd) driverLink; }; - meta = with stdenv.lib; { + meta = { description = "An open source 3D graphics library"; longDescription = '' The Mesa project began as an open-source implementation of the OpenGL diff --git a/pkgs/development/libraries/muparserx/default.nix b/pkgs/development/libraries/muparserx/default.nix index 2c5bde316b4..d7de5ff00f3 100644 --- a/pkgs/development/libraries/muparserx/default.nix +++ b/pkgs/development/libraries/muparserx/default.nix @@ -34,7 +34,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "A C++ Library for Parsing Expressions with Strings, Complex Numbers, Vectors, Matrices and more."; + description = "A C++ Library for Parsing Expressions with Strings, Complex Numbers, Vectors, Matrices and more"; homepage = "https://beltoforion.de/en/muparserx/"; license = licenses.bsd2; maintainers = with maintainers; [ drewrisinger ]; diff --git a/pkgs/development/libraries/mypaint-brushes/1.0.nix b/pkgs/development/libraries/mypaint-brushes/1.0.nix index c66329fa633..570588e22fb 100644 --- a/pkgs/development/libraries/mypaint-brushes/1.0.nix +++ b/pkgs/development/libraries/mypaint-brushes/1.0.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "http://mypaint.org/"; - description = "Brushes used by MyPaint and other software using libmypaint."; + description = "Brushes used by MyPaint and other software using libmypaint"; license = licenses.cc0; maintainers = with maintainers; [ jtojnar ]; platforms = platforms.unix; diff --git a/pkgs/development/libraries/mypaint-brushes/default.nix b/pkgs/development/libraries/mypaint-brushes/default.nix index 20caf6e5775..d2fb8ed143a 100644 --- a/pkgs/development/libraries/mypaint-brushes/default.nix +++ b/pkgs/development/libraries/mypaint-brushes/default.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "http://mypaint.org/"; - description = "Brushes used by MyPaint and other software using libmypaint."; + description = "Brushes used by MyPaint and other software using libmypaint"; license = licenses.cc0; maintainers = with maintainers; [ jtojnar ]; platforms = platforms.unix; diff --git a/pkgs/development/libraries/newt/default.nix b/pkgs/development/libraries/newt/default.nix index 0dade017d08..41d9671b204 100644 --- a/pkgs/development/libraries/newt/default.nix +++ b/pkgs/development/libraries/newt/default.nix @@ -1,5 +1,8 @@ -{ fetchurl, stdenv, slang, popt }: +{ lib, fetchurl, stdenv, slang, popt, python }: +let + pythonIncludePath = "${lib.getDev python}/include/python"; +in stdenv.mkDerivation rec { pname = "newt"; version = "0.52.21"; @@ -11,9 +14,14 @@ stdenv.mkDerivation rec { patchPhase = '' sed -i -e s,/usr/bin/install,install, -e s,-I/usr/include/slang,, Makefile.in po/Makefile + + substituteInPlace configure \ + --replace "/usr/include/python" "${pythonIncludePath}" + substituteInPlace configure.ac \ + --replace "/usr/include/python" "${pythonIncludePath}" ''; - buildInputs = [ slang popt ]; + buildInputs = [ slang popt python ]; NIX_LDFLAGS = "-lncurses"; diff --git a/pkgs/development/libraries/noise-suppression-for-voice/default.nix b/pkgs/development/libraries/noise-suppression-for-voice/default.nix new file mode 100644 index 00000000000..27b77a3bd32 --- /dev/null +++ b/pkgs/development/libraries/noise-suppression-for-voice/default.nix @@ -0,0 +1,26 @@ +{ stdenv, fetchFromGitHub, cmake }: + +stdenv.mkDerivation rec { + pname = "noise-suppression-for-voice-unstable"; + version = "2020-10-10"; + + src = fetchFromGitHub { + owner = "werman"; + repo = "noise-suppression-for-voice"; + rev = "15bac8f34018184d7d4de1b3b2ba98c433705f6c"; + sha256 = "11pwisbcks7g0mdgcrrv49v3ci1l6m26bbb7f67xz4pr1hai5dwc"; + }; + + nativeBuildInputs = [ cmake ]; + + meta = with stdenv.lib; { + description = "A real-time noise suppression plugin for voice"; + longDescription = '' +The plugin is meant to suppress a wide range of noise origins (from original paper): computer fans, office, crowd, airplane, car, train, construction. + ''; + homepage = "https://github.com/werman/noise-suppression-for-voice"; + license = licenses.gpl3; + maintainers = [ maintainers.henrikolsson ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/libraries/nspr/default.nix b/pkgs/development/libraries/nspr/default.nix index d9b7ff13d1a..e8893bc2040 100644 --- a/pkgs/development/libraries/nspr/default.nix +++ b/pkgs/development/libraries/nspr/default.nix @@ -2,7 +2,7 @@ , CoreServices ? null , buildPackages }: -let version = "4.28"; in +let version = "4.29"; in stdenv.mkDerivation { pname = "nspr"; @@ -10,7 +10,7 @@ stdenv.mkDerivation { src = fetchurl { url = "mirror://mozilla/nspr/releases/v${version}/src/nspr-${version}.tar.gz"; - sha256 = "0miv8ggil1xdywxw2sxaa05kqw7ahjgaimf7zjc6y2x8367grpk3"; + sha256 = "22286bdb8059d74632cc7c2865c139e63953ecfb33bf4362ab58827e86e92582"; }; patches = [ diff --git a/pkgs/development/libraries/nss/default.nix b/pkgs/development/libraries/nss/default.nix index e378cd5554c..e9ca475802d 100644 --- a/pkgs/development/libraries/nss/default.nix +++ b/pkgs/development/libraries/nss/default.nix @@ -5,7 +5,7 @@ let url = "http://dev.gentoo.org/~polynomial-c/mozilla/nss-3.15.4-pem-support-20140109.patch.xz"; sha256 = "10ibz6y0hknac15zr6dw4gv9nb5r5z9ym6gq18j3xqx7v7n3vpdw"; }; - version = "3.56"; + version = "3.57"; underscoreVersion = builtins.replaceStrings ["."] ["_"] version; in stdenv.mkDerivation rec { @@ -14,7 +14,7 @@ in stdenv.mkDerivation rec { src = fetchurl { url = "mirror://mozilla/security/nss/releases/NSS_${underscoreVersion}_RTM/src/${pname}-${version}.tar.gz"; - sha256 = "174f0ki2f8szkgv02jlsg2ci332sl9dabr2vcwnyjp1vxplf0xgq"; + sha256 = "55a86c01be860381d64bb4e5b94eb198df9b0f098a8af0e58c014df398bdc382"; }; depsBuildBuild = [ buildPackages.stdenv.cc ]; diff --git a/pkgs/development/libraries/ntirpc/default.nix b/pkgs/development/libraries/ntirpc/default.nix index 40f8d55462d..6654cc563d1 100644 --- a/pkgs/development/libraries/ntirpc/default.nix +++ b/pkgs/development/libraries/ntirpc/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub, cmake -, krb5, liburcu , libtirpc +, krb5, liburcu , libtirpc, libnsl } : stdenv.mkDerivation rec { @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { ''; nativeBuildInputs = [ cmake ]; - buildInputs = [ krb5 liburcu ]; + buildInputs = [ krb5 liburcu libnsl ]; postInstall = '' mkdir -p $out/etc diff --git a/pkgs/development/libraries/nuraft/default.nix b/pkgs/development/libraries/nuraft/default.nix new file mode 100644 index 00000000000..1554e167815 --- /dev/null +++ b/pkgs/development/libraries/nuraft/default.nix @@ -0,0 +1,24 @@ +{ stdenv, fetchFromGitHub, cmake, boost172, asio, openssl, zlib }: + +stdenv.mkDerivation rec { + pname = "nuraft"; + version = "1.1.2"; + + src = fetchFromGitHub { + owner = "eBay"; + repo = "NuRaft"; + rev = "v${version}"; + sha256 = "sha256-l6rG8f+JAWfAJxEZPKRHZo2k8x9WbtSJC3gGCSMHYfs="; + }; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ boost172 asio openssl zlib ]; + + meta = with stdenv.lib; { + homepage = "https://github.com/eBay/NuRaft"; + description = "C++ implementation of Raft core logic as a replication library"; + license = licenses.asl20; + platforms = platforms.linux; + maintainers = with maintainers; [ wheelsandmetal ]; + }; +} diff --git a/pkgs/development/libraries/nuspell/default.nix b/pkgs/development/libraries/nuspell/default.nix index 7de16c7c119..c8cb7734e90 100644 --- a/pkgs/development/libraries/nuspell/default.nix +++ b/pkgs/development/libraries/nuspell/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "nuspell"; - version = "3.1.2"; + version = "4.0.0"; src = fetchFromGitHub { owner = "nuspell"; repo = "nuspell"; rev = "v${version}"; - sha256 = "0wbb6dwmzlsyy224y0liis0azgzwbjdvcyzc31pw1aw6vbp36na6"; + sha256 = "1jfnwva2i67i9pyh123a5h2zs5p7gw77qh4w7qkx61jigsyxc5v7"; }; nativeBuildInputs = [ cmake pkgconfig ronn ]; @@ -31,6 +31,6 @@ stdenv.mkDerivation rec { description = "Free and open source C++ spell checking library"; homepage = "https://nuspell.github.io/"; maintainers = with maintainers; [ fpletz ]; - license = licenses.gpl3; + license = licenses.lgpl3Plus; }; } diff --git a/pkgs/development/libraries/nvidia-texture-tools/default.nix b/pkgs/development/libraries/nvidia-texture-tools/default.nix index f9b745e882f..a2bdbc798eb 100644 --- a/pkgs/development/libraries/nvidia-texture-tools/default.nix +++ b/pkgs/development/libraries/nvidia-texture-tools/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake }: +{ stdenv, fetchFromGitHub, cmake, fetchpatch }: stdenv.mkDerivation rec { pname = "nvidia-texture-tools"; @@ -11,6 +11,13 @@ stdenv.mkDerivation rec { sha256 = "1qzyr3ib5dpxyq1y33lq02qv4cww075sm9bm4f651d34q5x38sk3"; }; + patches = [ + (fetchpatch { + url = "https://github.com/castano/nvidia-texture-tools/commit/6474f2593428d89ec152da2502aa136ababe66ca.patch"; + sha256 = "0akbkvm55hiv58jx71h9hj173rbnqlb5a430y9azjiix7zga42vd"; + }) + ]; + nativeBuildInputs = [ cmake ]; outputs = [ "out" "dev" "lib" ]; diff --git a/pkgs/development/libraries/oneDNN/default.nix b/pkgs/development/libraries/oneDNN/default.nix index ad311daf1db..b780b9f4e39 100644 --- a/pkgs/development/libraries/oneDNN/default.nix +++ b/pkgs/development/libraries/oneDNN/default.nix @@ -5,13 +5,13 @@ # https://github.com/oneapi-src/oneDNN#oneapi-deep-neural-network-library-onednn stdenv.mkDerivation rec { pname = "oneDNN"; - version = "1.6.3"; + version = "1.6.4"; src = fetchFromGitHub { owner = "oneapi-src"; repo = "oneDNN"; rev = "v${version}"; - sha256 = "1cskqpa14jjgw409wbxw03kpm9a1g6lmmc2fs2916if6xd70xdj3"; + sha256 = "0y4lpx24k08wydv4aprfn2icg6ixk0iprk8pmbvyaa6gyab70vjy"; }; outputs = [ "out" "dev" "doc" ]; diff --git a/pkgs/development/libraries/opencascade-occt/7.3.nix b/pkgs/development/libraries/opencascade-occt/7.3.nix deleted file mode 100644 index 5f8302aff3c..00000000000 --- a/pkgs/development/libraries/opencascade-occt/7.3.nix +++ /dev/null @@ -1,29 +0,0 @@ -{ stdenv, fetchurl, fetchpatch, cmake, ninja, tcl, tk, - libGL, libGLU, libXext, libXmu, libXi, darwin }: - -stdenv.mkDerivation rec { - pname = "opencascade-occt"; - version = "7.3.0p3"; - commit = "V${builtins.replaceStrings ["."] ["_"] version}"; - - src = fetchurl { - name = "occt-${commit}.tar.gz"; - url = "https://git.dev.opencascade.org/gitweb/?p=occt.git;a=snapshot;h=${commit};sf=tgz"; - sha256 = "0k9c3ypcnjcilq1dhsf6xxbd52gyq4h5rchvp30k3c8ph4ris5pz"; - }; - - nativeBuildInputs = [ cmake ninja ]; - buildInputs = [ tcl tk libGL libGLU libXext libXmu libXi ] - ++ stdenv.lib.optional stdenv.isDarwin darwin.apple_sdk.frameworks.Cocoa; - - meta = with stdenv.lib; { - description = "Open CASCADE Technology, libraries for 3D modeling and numerical simulation"; - homepage = "https://www.opencascade.org/"; - license = licenses.lgpl21; # essentially... - # The special exception defined in the file OCCT_LGPL_EXCEPTION.txt - # are basically about making the license a little less share-alike. - maintainers = with maintainers; [ amiloradovsky ]; - platforms = platforms.all; - }; - -} diff --git a/pkgs/development/libraries/opencv/default.nix b/pkgs/development/libraries/opencv/default.nix index d71c210fb6f..0749ec9e7f3 100644 --- a/pkgs/development/libraries/opencv/default.nix +++ b/pkgs/development/libraries/opencv/default.nix @@ -87,5 +87,6 @@ stdenv.mkDerivation rec { license = licenses.bsd3; maintainers = with maintainers; [ ]; platforms = platforms.linux; + broken = true; }; } diff --git a/pkgs/development/libraries/opendbx/default.nix b/pkgs/development/libraries/opendbx/default.nix index 16ec6a5c110..954e6cc6b66 100644 --- a/pkgs/development/libraries/opendbx/default.nix +++ b/pkgs/development/libraries/opendbx/default.nix @@ -1,5 +1,7 @@ { stdenv, fetchurl, readline, libmysqlclient, postgresql, sqlite }: +let inherit (stdenv.lib) getDev; in + stdenv.mkDerivation rec { name = "opendbx-1.4.6"; @@ -9,7 +11,7 @@ stdenv.mkDerivation rec { }; preConfigure = '' - export CPPFLAGS="-I${libmysqlclient}/include/mysql" + export CPPFLAGS="-I${getDev libmysqlclient}/include/mysql" export LDFLAGS="-L${libmysqlclient}/lib/mysql -L${postgresql}/lib" configureFlagsArray=(--with-backends="mysql pgsql sqlite3") ''; diff --git a/pkgs/development/libraries/openscenegraph/default.nix b/pkgs/development/libraries/openscenegraph/default.nix index 4ded4770fc8..e2a52a93333 100644 --- a/pkgs/development/libraries/openscenegraph/default.nix +++ b/pkgs/development/libraries/openscenegraph/default.nix @@ -1,6 +1,7 @@ { stdenv, lib, fetchFromGitHub, cmake, pkgconfig, doxygen, libX11, libXinerama, libXrandr, libGLU, libGL, glib, ilmbase, libxml2, pcre, zlib, + AGL, Carbon, Cocoa, Foundation, jpegSupport ? true, libjpeg, exrSupport ? false, openexr, gifSupport ? true, giflib, @@ -60,6 +61,7 @@ stdenv.mkDerivation rec { ++ lib.optional sdlSupport SDL2 ++ lib.optionals restSupport [ asio boost ] ++ lib.optionals withExamples [ fltk wxGTK ] + ++ lib.optionals stdenv.isDarwin [ AGL Carbon Cocoa Foundation ] ; cmakeFlags = lib.optional (!withApps) "-DBUILD_OSG_APPLICATIONS=OFF" ++ lib.optional withExamples "-DBUILD_OSG_EXAMPLES=ON"; @@ -68,7 +70,7 @@ stdenv.mkDerivation rec { description = "A 3D graphics toolkit"; homepage = "http://www.openscenegraph.org/"; maintainers = with maintainers; [ aanderse raskin ]; - platforms = platforms.linux; + platforms = with platforms; linux ++ darwin; license = "OpenSceneGraph Public License - free LGPL-based license"; }; } diff --git a/pkgs/development/libraries/pangoxsl/default.nix b/pkgs/development/libraries/pangoxsl/default.nix index d316250411d..26d012e81e1 100644 --- a/pkgs/development/libraries/pangoxsl/default.nix +++ b/pkgs/development/libraries/pangoxsl/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation { ]; meta = with stdenv.lib; { - description = "Implements several of the inline properties defined by XSL that are not currently implemented by Pango."; + description = "Implements several of the inline properties defined by XSL that are not currently implemented by Pango"; homepage = "https://sourceforge.net/projects/pangopdf"; platforms = platforms.unix; license = licenses.lgpl2; diff --git a/pkgs/development/libraries/pdal/default.nix b/pkgs/development/libraries/pdal/default.nix index 2059b4db7fb..4405d3812b7 100644 --- a/pkgs/development/libraries/pdal/default.nix +++ b/pkgs/development/libraries/pdal/default.nix @@ -3,7 +3,7 @@ , fetchpatch , cmake , pkg-config -# , openscenegraph +, openscenegraph , curl , gdal , hdf5-cpp @@ -20,34 +20,22 @@ stdenv.mkDerivation rec { pname = "pdal"; - version = "2.1.0"; + version = "2.2.0"; src = fetchFromGitHub { owner = "PDAL"; repo = "PDAL"; rev = version; - sha256 = "0zb3zjqgmjjryb648c1hmwh1nfa7893bjzbqpmr6shjxvzgnj9p6"; + sha256 = "1i7nbfvv60jjlf3iq7a7xci4dycmg2wrd35dqvjwl6hpfynpb6wz"; }; - patches = [ - # Fix duplicate paths like - # /nix/store/7iafqfmjdlxqim922618wg87cclrpznr-PDAL-2.1.0//nix/store/7iafqfmjdlxqim922618wg87cclrpznr-PDAL-2.1.0/lib - # similar to https://github.com/NixOS/nixpkgs/pull/82654. - # TODO Remove on release > 2.1.0 - (fetchpatch { - name = "pdal-Fixup-install-config.patch"; - url = "https://github.com/PDAL/PDAL/commit/2f887ef624db50c6e20f091f34bb5d3e65b5c5c8.patch"; - sha256 = "0pdw9v5ypq7w9i7qzgal110hjb9nqi386jvy3x2h4vf1dyalzid8"; - }) - ]; - nativeBuildInputs = [ cmake pkg-config ]; buildInputs = [ - # openscenegraph + openscenegraph curl gdal hdf5-cpp @@ -68,11 +56,6 @@ stdenv.mkDerivation rec { "-DBUILD_PLUGIN_PGPOINTCLOUD=ON" "-DBUILD_PLUGIN_TILEDB=ON" - # Plugins that can probably be made working relatively easily: - # As of writing, seems to be incompatible (build error): - # error: no matching function for call to 'osg::TriangleFunctor::operator()(const Vec3&, const Vec3&, const Vec3&)' - "-DBUILD_PLUGIN_OPENSCENEGRAPH=OFF" # requires OpenGL - # Plugins can probably not be made work easily: "-DBUILD_PLUGIN_CPD=OFF" "-DBUILD_PLUGIN_FBX=OFF" # Autodesk FBX SDK is gratis+proprietary; not packaged in nixpkgs @@ -89,7 +72,7 @@ stdenv.mkDerivation rec { ]; meta = with stdenv.lib; { - description = "PDAL is Point Data Abstraction Library. GDAL for point cloud data."; + description = "PDAL is Point Data Abstraction Library. GDAL for point cloud data"; homepage = "https://pdal.io"; license = licenses.bsd3; maintainers = with maintainers; [ nh2 ]; diff --git a/pkgs/development/libraries/physics/cernlib/0001-Use-strerror-rather-than-sys_errlist-to-fix-compilat.patch b/pkgs/development/libraries/physics/cernlib/0001-Use-strerror-rather-than-sys_errlist-to-fix-compilat.patch new file mode 100644 index 00000000000..bc8c77f913c --- /dev/null +++ b/pkgs/development/libraries/physics/cernlib/0001-Use-strerror-rather-than-sys_errlist-to-fix-compilat.patch @@ -0,0 +1,94 @@ +From a69607c511b6da94cde477283b129cbc9cfdd5a3 Mon Sep 17 00:00:00 2001 +From: Maximilian Bosch +Date: Tue, 11 Aug 2020 12:32:06 +0200 +Subject: [PATCH] Use `strerror` rather than `sys_errlist` to fix compilation + w/glibc-2.32 + +To quote the release-notes[1]: + + All programs should use + strerror or strerror_r instead. + +[1] https://sourceware.org/pipermail/libc-announce/2020/000029.html +--- + 2006/src/packlib/cspack/sysreq/serror.c | 10 +--------- + 2006/src/packlib/cspack/sysreq/socket.c | 2 +- + 2006/src/packlib/kernlib/kernbit/z268/systems.c | 4 ++-- + 2006/src/pawlib/paw/piafs/piafc.c | 5 +---- + 4 files changed, 5 insertions(+), 16 deletions(-) + +diff --git a/2006/src/packlib/cspack/sysreq/serror.c b/2006/src/packlib/cspack/sysreq/serror.c +index 3667c42a..c560e499 100644 +--- a/2006/src/packlib/cspack/sysreq/serror.c ++++ b/2006/src/packlib/cspack/sysreq/serror.c +@@ -176,15 +176,7 @@ int n; + } + else { + #if !defined(vms) +- if ((n>0) && (n=1.1.7') + : dependency('', required: false)) + +-installed_tests_metadir = join_paths(pipewire_datadir, 'installed-tests', pipewire_name) +-installed_tests_execdir = join_paths(pipewire_libexecdir, 'installed-tests', pipewire_name) ++installed_tests_metadir = join_paths(get_option('installed_test_prefix'), 'share', 'installed-tests', pipewire_name) ++installed_tests_execdir = join_paths(get_option('installed_test_prefix'), 'libexec', 'installed-tests', pipewire_name) + installed_tests_enabled = get_option('installed_tests') + installed_tests_template = files('template.test.in') + +diff --git a/meson_options.txt b/meson_options.txt +index f03033c3..32df6c53 100644 +--- a/meson_options.txt ++++ b/meson_options.txt +@@ -18,6 +18,9 @@ option('installed_tests', + description: 'Install manual and automated test executables', + type: 'boolean', + value: false) ++option('installed_test_prefix', ++ description: 'Prefix for installed tests', ++ type: 'string') + option('gstreamer', + description: 'Build GStreamer plugins', + type: 'boolean', diff --git a/pkgs/development/libraries/pipewire/test-paths.nix b/pkgs/development/libraries/pipewire/test-paths.nix new file mode 100644 index 00000000000..0ae69374194 --- /dev/null +++ b/pkgs/development/libraries/pipewire/test-paths.nix @@ -0,0 +1,23 @@ +{ lib, runCommand, pipewire, paths-out, paths-lib }: + +let + check-path = output: path: '' + if [[ ! -f "${output}/${path}" && ! -d "${output}/${path}" ]]; then + printf "Missing: %s\n" "${output}/${path}" | tee -a $out + error=error + else + printf "Found: %s\n" "${output}/${path}" | tee -a $out + fi + ''; + + check-output = output: lib.concatMapStringsSep "\n" (check-path output); +in runCommand "pipewire-test-paths" { } '' + touch $out + + ${check-output pipewire.lib paths-lib} + ${check-output pipewire paths-out} + + if [[ -n "$error" ]]; then + exit 1 + fi +'' diff --git a/pkgs/development/libraries/properties-cpp/default.nix b/pkgs/development/libraries/properties-cpp/default.nix index ce56c464588..fb998169595 100644 --- a/pkgs/development/libraries/properties-cpp/default.nix +++ b/pkgs/development/libraries/properties-cpp/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://launchpad.net/properties-cpp"; - description = "A very simple convenience library for handling properties and signals in C++11."; + description = "A very simple convenience library for handling properties and signals in C++11"; license = licenses.lgpl3; maintainers = with maintainers; [ edwtjo ]; }; diff --git a/pkgs/development/libraries/pupnp/default.nix b/pkgs/development/libraries/pupnp/default.nix index 192ed56d456..4930b222d03 100644 --- a/pkgs/development/libraries/pupnp/default.nix +++ b/pkgs/development/libraries/pupnp/default.nix @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { hardeningDisable = [ "fortify" ]; meta = { - description = "libupnp, an open source UPnP development kit for Linux"; + description = "An open source UPnP development kit for Linux"; longDescription = '' The Linux SDK for UPnP Devices (libupnp) provides developers diff --git a/pkgs/development/libraries/python-qt/default.nix b/pkgs/development/libraries/python-qt/default.nix index a52b3608eb7..6f2550ca9ac 100644 --- a/pkgs/development/libraries/python-qt/default.nix +++ b/pkgs/development/libraries/python-qt/default.nix @@ -33,7 +33,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "PythonQt is a dynamic Python binding for the Qt framework. It offers an easy way to embed the Python scripting language into your C++ Qt applications."; + description = "PythonQt is a dynamic Python binding for the Qt framework. It offers an easy way to embed the Python scripting language into your C++ Qt applications"; homepage = "http://pythonqt.sourceforge.net/"; license = licenses.lgpl21; platforms = platforms.all; diff --git a/pkgs/development/libraries/qt-5/hooks/fix-qmake-libtool.sh b/pkgs/development/libraries/qt-5/hooks/fix-qmake-libtool.sh index 5acaeb82446..6aaeda052d7 100644 --- a/pkgs/development/libraries/qt-5/hooks/fix-qmake-libtool.sh +++ b/pkgs/development/libraries/qt-5/hooks/fix-qmake-libtool.sh @@ -5,8 +5,19 @@ fixQmakeLibtool() { if [ -d "$1" ]; then find "$1" -name '*.la' | while read la; do + set +e + framework_libs=$(grep '^dependency_libs' "$la" | grep -Eo -- '-framework +\w+' | tr '\n' ' ') + set -e sed -i "$la" \ - -e '/^dependency_libs/ s,\(/[^ ]\+\)/lib\([^/ ]\+\)\.so,-L\1 -l\2,g' + -e '/^dependency_libs/ s,\(/[^ ]\+\)/lib\([^/ ]\+\)\.so,-L\1 -l\2,g' \ + -e '/^dependency_libs/ s,-framework \+\w\+,,g' + if [ ! -z "$framework_libs" ]; then + if grep '^inherited_linker_flags=' $la >/dev/null; then + sed -i "$la" -e "s/^\(inherited_linker_flags='[^']*\)/\1 $framework_libs/" + else + echo "inherited_linker_flags='$framework_libs'" >> "$la" + fi + fi done fi } diff --git a/pkgs/development/libraries/qtutilities/default.nix b/pkgs/development/libraries/qtutilities/default.nix index 388665f5aab..916e381ab4d 100644 --- a/pkgs/development/libraries/qtutilities/default.nix +++ b/pkgs/development/libraries/qtutilities/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "qtutilities"; - version = "6.0.6"; + version = "6.3.0"; src = fetchFromGitHub { owner = "Martchus"; repo = pname; rev = "v${version}"; - sha256 = "0g3f18530w5f8dlzrh45k868hspga5p3m8qpz7pcg3nsdjda8cwz"; + sha256 = "sha256-vHx2JMPqioY8jUpBOIFdhhN1mIUV3LS8ayQOo3g7bY0="; }; buildInputs = [ qtbase cpp-utilities ]; diff --git a/pkgs/development/libraries/redkite/default.nix b/pkgs/development/libraries/redkite/default.nix index be6bf0d7fa0..af8a1a914e4 100644 --- a/pkgs/development/libraries/redkite/default.nix +++ b/pkgs/development/libraries/redkite/default.nix @@ -2,24 +2,24 @@ stdenv.mkDerivation rec { pname = "redkite"; - version = "1.0.3"; + version = "1.2.0"; src = fetchFromGitLab { owner = "iurie-sw"; repo = pname; rev = "v${version}"; - sha256 = "1m2db7c791fi33snkjwnvlxapmf879g5r8azlkx7sr6vp2s0jq2k"; + sha256 = "0c5k0a6ydb8szdgniqsva8l9j2sishlhsww13b3a9grvr7hb2bpq"; }; nativeBuildInputs = [ cmake ]; buildInputs = [ cairo ]; - meta = { + meta = with stdenv.lib; { homepage = "https://gitlab.com/iurie-sw/redkite"; description = "A small GUI toolkit"; - license = stdenv.lib.licenses.gpl3Plus; - platforms = stdenv.lib.platforms.linux; - maintainers = [ stdenv.lib.maintainers.magnetophon ]; + license = licenses.gpl3Plus; + platforms = platforms.linux; + maintainers = [ maintainers.magnetophon ]; }; } diff --git a/pkgs/development/libraries/relibc/default.nix b/pkgs/development/libraries/relibc/default.nix index 808d9154711..cedffcaaef9 100644 --- a/pkgs/development/libraries/relibc/default.nix +++ b/pkgs/development/libraries/relibc/default.nix @@ -8,9 +8,9 @@ let bootstrapCrossRust = stdenvNoCC.mkDerivation { name = "binary-redox-rust"; - src = fetchTarball { - name = "redox-rust-toolchain-bin.tar.gz"; - url = "https://www.dropbox.com/s/33r92en0t47l1ei/redox-rust-toolchain-bin.tar.gz?dl=1"; + src = buildPackages.fetchzip { + name = "redox-rust-toolchain.tar.gz"; + url = "https://www.dropbox.com/s/qt7as0j7cwnin8z/redox-rust-toolchain.tar.gz?dl=1"; sha256 = "1g17qp2q6b88p04yclkw6amm374pqlakrmw9kd86vw8z4g70jkxm"; }; diff --git a/pkgs/development/libraries/rlottie/default.nix b/pkgs/development/libraries/rlottie/default.nix index a77c851ebca..3713bcf1df7 100644 --- a/pkgs/development/libraries/rlottie/default.nix +++ b/pkgs/development/libraries/rlottie/default.nix @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://github.com/Samsung/rlottie"; - description = "A platform independent standalone c++ library for rendering vector based animations and art in realtime."; + description = "A platform independent standalone c++ library for rendering vector based animations and art in realtime"; license = licenses.unfree; # Mixed, see https://github.com/Samsung/rlottie/blob/master/COPYING platforms = platforms.all; maintainers = with maintainers; [ CRTified ]; diff --git a/pkgs/development/libraries/rocksdb/default.nix b/pkgs/development/libraries/rocksdb/default.nix index 9bc3770f21e..0cb36fd0260 100644 --- a/pkgs/development/libraries/rocksdb/default.nix +++ b/pkgs/development/libraries/rocksdb/default.nix @@ -8,39 +8,33 @@ , snappy , zlib , zstd +, enableJemalloc ? false, jemalloc , enableLite ? false +, enableShared ? true }: stdenv.mkDerivation rec { pname = "rocksdb"; - version = "6.10.2"; + version = "6.12.7"; src = fetchFromGitHub { owner = "facebook"; repo = pname; rev = "v${version}"; - sha256 = "1f2wqb6px812ijcivq3rsknqgkv01wblc6sd8wavhrw8qljgr3s1"; + sha256 = "0cpi0v691xsh20hj5x2y2z7dmjvhd3brr0swszv0xqjg2q0f7zdb"; }; nativeBuildInputs = [ cmake ninja ]; - buildInputs = [ bzip2 lz4 snappy zlib zstd ]; + propagatedBuildInputs = [ bzip2 lz4 snappy zlib zstd ]; - patches = [ - # Without this change private dependencies are exported. - # Can be removed after the next release. - # https://github.com/facebook/rocksdb/pull/6790 - (fetchpatch { - url = "https://github.com/facebook/rocksdb/commit/07204837ce8d66e1e6e4893178f3fd040f9c1044.patch"; - sha256 = "17097ybkhy0i089zzkpvcj65c7g5skvjvdzi1k09x4i1d719wm39"; - }) - ]; + buildInputs = stdenv.lib.optional enableJemalloc jemalloc; NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.cc.isGNU "-Wno-error=deprecated-copy -Wno-error=pessimizing-move"; cmakeFlags = [ "-DPORTABLE=1" - "-DWITH_JEMALLOC=0" + "-DWITH_JEMALLOC=${if enableJemalloc then "1" else "0"}" "-DWITH_JNI=0" "-DWITH_BENCHMARK_TOOLS=0" "-DWITH_TESTS=1" @@ -58,7 +52,7 @@ stdenv.mkDerivation rec { "-DFORCE_SSE42=1") (stdenv.lib.optional enableLite "-DROCKSDB_LITE=1") "-DFAIL_ON_WARNINGS=${if stdenv.hostPlatform.isMinGW then "NO" else "YES"}" - ]; + ] ++ stdenv.lib.optional (!enableShared) "-DROCKSDB_BUILD_SHARED=0"; # otherwise "cc1: error: -Wformat-security ignored without -Wformat [-Werror=format-security]" hardeningDisable = stdenv.lib.optional stdenv.hostPlatform.isWindows "format"; diff --git a/pkgs/development/libraries/science/biology/elastix/default.nix b/pkgs/development/libraries/science/biology/elastix/default.nix index 4d98b12928f..e55a72fb9f8 100644 --- a/pkgs/development/libraries/science/biology/elastix/default.nix +++ b/pkgs/development/libraries/science/biology/elastix/default.nix @@ -1,32 +1,26 @@ -{ stdenv, fetchFromGitHub, fetchpatch, cmake, itk, python3 }: +{ stdenv, fetchFromGitHub, fetchpatch, cmake, itk, python3, Cocoa }: stdenv.mkDerivation rec { pname = "elastix"; - version = "5.0.0"; + version = "5.0.1"; src = fetchFromGitHub { owner = "SuperElastix"; repo = pname; rev = version; - sha256 = "1zrl7rz4lwsx88b2shnl985f3a97lmp4ksbd437h9y0hfjq8l0lj"; + sha256 = "1mx8kkak2d3ibfrxrh8jkmh2zkdlgl9h578wiw3617zcwaa97bxw"; }; patches = [ (fetchpatch { - name = "itk-5.1-compat.patch"; - url = "https://github.com/SuperElastix/elastix/commit/402e9a26f22f805b8f2db00c00e59f75fa1783ad.patch"; - sha256 = "1il6gc1lgy78i0w6gkkppr61nh6g0yjspbfk19hcz20778m5jhz9"; - }) - (fetchpatch { - name = "fix-osx-build.patch"; - url = "https://github.com/SuperElastix/elastix/commit/52e1dc3928046f9fbb85d4b2ecd0d5175fa9695d.patch"; - sha256 = "1hf7kgx1jv497pf0x5wj79sy1wncxcvhrkix9w086lcr8zwxvn9q"; + name = "install-executables.patch"; # https://github.com/SuperElastix/elastix/issues/305 + url = "https://github.com/SuperElastix/elastix/commit/8e26cdc0d66f6030c7be085fdc424d84d4fc7546.patch"; + sha256 = "12y9wbpi9jlarnw6fk4iby97jxvx5g4daq9zqblbcmn51r134bj5"; }) ]; - nativeBuildInputs = [ cmake python3 ]; - buildInputs = [ itk ]; + buildInputs = [ itk ] ++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa ]; doCheck = !stdenv.isDarwin; # usual dynamic linker issues diff --git a/pkgs/development/libraries/science/biology/htslib/default.nix b/pkgs/development/libraries/science/biology/htslib/default.nix index 7ee63e9bb41..9da6595e7a4 100644 --- a/pkgs/development/libraries/science/biology/htslib/default.nix +++ b/pkgs/development/libraries/science/biology/htslib/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "htslib"; - version = "1.10.2"; + version = "1.11"; src = fetchurl { url = "https://github.com/samtools/htslib/releases/download/${version}/${pname}-${version}.tar.bz2"; - sha256 = "0f8rglbvf4aaw41i2sxlpq7pvhly93sjqiz0l4q3hwki5zg47dg3"; + sha256 = "1mrq4mihzx37yqhj3sfz6da6mw49niia808bzsw2gkkgmadxvyng"; }; # perl is only used during the check phase. diff --git a/pkgs/development/libraries/science/math/brial/default.nix b/pkgs/development/libraries/science/math/brial/default.nix index 90d7357cc07..2e85732f3f3 100644 --- a/pkgs/development/libraries/science/math/brial/default.nix +++ b/pkgs/development/libraries/science/math/brial/default.nix @@ -8,14 +8,14 @@ }: stdenv.mkDerivation rec { - version = "1.2.8"; + version = "1.2.10"; pname = "brial"; src = fetchFromGitHub { owner = "BRiAl"; repo = "BRiAl"; rev = version; - sha256 = "0qhgckd4fvbs40jw14mvw89rccv94d3df27kipd27hxd4cx7y80y"; + sha256 = "1qg6ssp87rb8p37kahxmm88fbxqg6r540cky5v7wq7l19n2b1bss"; }; # FIXME package boost-test and enable checks diff --git a/pkgs/development/libraries/science/math/itpp/default.nix b/pkgs/development/libraries/science/math/itpp/default.nix index d7fae9ae479..c74a7408e98 100644 --- a/pkgs/development/libraries/science/math/itpp/default.nix +++ b/pkgs/development/libraries/science/math/itpp/default.nix @@ -46,7 +46,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "IT++ is a C++ library of mathematical, signal processing and communication classes and functions."; + description = "IT++ is a C++ library of mathematical, signal processing and communication classes and functions"; homepage = http://itpp.sourceforge.net/; license = licenses.gpl3; platforms = platforms.unix; diff --git a/pkgs/development/libraries/science/math/libtorch/bin.nix b/pkgs/development/libraries/science/math/libtorch/bin.nix index 3ae46270586..33229bbefc8 100644 --- a/pkgs/development/libraries/science/math/libtorch/bin.nix +++ b/pkgs/development/libraries/science/math/libtorch/bin.nix @@ -12,9 +12,9 @@ }: let - version = "1.6.0"; + version = "1.7.0"; device = if cudaSupport then "cuda" else "cpu"; - srcs = import ./binary-hashes.nix; + srcs = import ./binary-hashes.nix version; unavailable = throw "libtorch is not available for this platform"; in stdenv.mkDerivation { inherit version; diff --git a/pkgs/development/libraries/science/math/libtorch/binary-hashes.nix b/pkgs/development/libraries/science/math/libtorch/binary-hashes.nix index 92a2e05e0ba..6048fe8676b 100644 --- a/pkgs/development/libraries/science/math/libtorch/binary-hashes.nix +++ b/pkgs/development/libraries/science/math/libtorch/binary-hashes.nix @@ -1,14 +1,14 @@ -{ +version: { x86_64-darwin-cpu = { - url = "https://download.pytorch.org/libtorch/cpu/libtorch-macos-1.6.0.zip"; - sha256 = "0d4n7la31qzl4s9pwvm07la7q6lhcwiww0yjpfz3kw6nvx84p22r"; + url = "https://download.pytorch.org/libtorch/cpu/libtorch-macos-${version}.zip"; + sha256 = "1912lklil0i7i10j1fm4qzcq96cc8c281l9fn5gfbwa2wwry0r59"; }; x86_64-linux-cpu = { - url = "https://download.pytorch.org/libtorch/cpu/libtorch-cxx11-abi-shared-with-deps-1.6.0%2Bcpu.zip"; - sha256 = "1975b4zvyihzh89vnwspw0vf9qr05sxj8939vcrlmv3gzvdspcxz"; + url = "https://download.pytorch.org/libtorch/cpu/libtorch-cxx11-abi-shared-with-deps-${version}%2Bcpu.zip"; + sha256 = "0jdd7bjcy20xz2gfv8f61zdrbzxz5425bnqaaqgrwpzvd45ay8px"; }; x86_64-linux-cuda = { - url = "https://download.pytorch.org/libtorch/cu102/libtorch-cxx11-abi-shared-with-deps-1.6.0.zip"; - sha256 = "127qnfyi1faqbm40sbnsyqxjhrqj82bzwqyz7c1hs2bm0zgrrpya"; + url = "https://download.pytorch.org/libtorch/cu102/libtorch-cxx11-abi-shared-with-deps-${version}.zip"; + sha256 = "1ag6lvf3a400ivqq4g9cxpmxzlfrga0y5ssjy0rfpw6i1xljibn6"; }; } diff --git a/pkgs/development/libraries/science/math/openblas/default.nix b/pkgs/development/libraries/science/math/openblas/default.nix index 37f875f1bfe..b03e2b3a8ca 100644 --- a/pkgs/development/libraries/science/math/openblas/default.nix +++ b/pkgs/development/libraries/science/math/openblas/default.nix @@ -107,6 +107,9 @@ in stdenv.mkDerivation rec { pname = "openblas"; version = "0.3.10"; + + outputs = [ "out" "dev" ]; + src = fetchFromGitHub { owner = "xianyi"; repo = "OpenBLAS"; diff --git a/pkgs/development/libraries/science/math/openlibm/default.nix b/pkgs/development/libraries/science/math/openlibm/default.nix index 560f39e4e99..3553833443f 100644 --- a/pkgs/development/libraries/science/math/openlibm/default.nix +++ b/pkgs/development/libraries/science/math/openlibm/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { pname = "openlibm"; - version = "0.7.1"; + version = "0.7.2"; src = fetchurl { url = "https://github.com/JuliaLang/openlibm/archive/v${version}.tar.gz"; - sha256 = "0yg8sfibr38hpb4s5ri7i0ivp96c7khdwhlxngjiymvl3jvm5cnl"; + sha256 = "09fl7ij0p0js2sydjvmm9k4d0c83iwpb2sad9d9hin8sjdfyp4vp"; }; makeFlags = [ "prefix=$(out)" ]; diff --git a/pkgs/development/libraries/science/math/parmetis/default.nix b/pkgs/development/libraries/science/math/parmetis/default.nix index 97023d07c7f..8f24356c733 100644 --- a/pkgs/development/libraries/science/math/parmetis/default.nix +++ b/pkgs/development/libraries/science/math/parmetis/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices"; + description = "An MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices"; homepage = "http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview"; platforms = platforms.all; license = licenses.unfree; diff --git a/pkgs/development/libraries/science/math/spooles/default.nix b/pkgs/development/libraries/science/math/spooles/default.nix index 953f5a70b8a..c55a1b8002e 100644 --- a/pkgs/development/libraries/science/math/spooles/default.nix +++ b/pkgs/development/libraries/science/math/spooles/default.nix @@ -15,6 +15,10 @@ stdenv.mkDerivation rec { ./spooles.patch ]; + postPatch = stdenv.lib.optionalString stdenv.hostPlatform.isDarwin '' + substituteInPlace makefile --replace '-Wl,-soname' '-Wl,-install_name' + ''; + buildPhase = '' make lib ''; diff --git a/pkgs/development/libraries/science/math/spooles/spooles.patch b/pkgs/development/libraries/science/math/spooles/spooles.patch index c0c93c9365c..71fb4a7f44e 100644 --- a/pkgs/development/libraries/science/math/spooles/spooles.patch +++ b/pkgs/development/libraries/science/math/spooles/spooles.patch @@ -166,7 +166,7 @@ index f014c7d..7c8042a 100755 #cd MPI ; make lib -#cd MT ; make lib + cd MT ; make lib -+ gcc -shared */*/*.lo -Wl,-soname,libspooles.so.2.2 -o libspooles.so.2.2 -lpthread -lm ++ $(CC) -shared */*/*.lo -Wl,-soname,libspooles.so.2.2 -o libspooles.so.2.2 -lpthread -lm + ln -s libspooles.so.2.2 libspooles.so global : diff --git a/pkgs/development/libraries/science/networking/ns-3/default.nix b/pkgs/development/libraries/science/networking/ns-3/default.nix index 73be2a8ca6c..b611a2baf8e 100644 --- a/pkgs/development/libraries/science/networking/ns-3/default.nix +++ b/pkgs/development/libraries/science/networking/ns-3/default.nix @@ -26,7 +26,7 @@ # All modules can be enabled by choosing 'all_modules'. # we include here the DCE mandatory ones -, modules ? [ "core" "network" "internet" "point-to-point" "fd-net-device" "netanim"] +, modules ? [ "core" "network" "internet" "point-to-point" "point-to-point-layout" "fd-net-device" "netanim" ] , lib }: @@ -38,13 +38,13 @@ let in stdenv.mkDerivation rec { pname = "ns-3"; - version = "30"; + version = "32"; src = fetchFromGitLab { owner = "nsnam"; repo = "ns-3-dev"; rev = "ns-3.${version}"; - sha256 = "0smdi3gglmafpc7a20hj2lbmwks3d5fpsicpn39lmm3svazw0bvp"; + sha256 = "158yjhsrmslj1q4zcq5p16hv9i82qnxx714l7idicncn0wzrfx7k"; }; nativeBuildInputs = [ wafHook ]; @@ -60,6 +60,8 @@ stdenv.mkDerivation rec { postPatch = '' patchShebangs doc/ns3_html_theme/get_version.sh + # FIX/Remove when https://github.com/NixOS/nixpkgs/pull/69310 gets merged + sed -i 's/program.ns3_module_dependencies.copy()/program.ns3_module_dependencies[:]/g' wscript ''; wafConfigureFlags = with stdenv.lib; [ diff --git a/pkgs/development/libraries/sentencepiece/default.nix b/pkgs/development/libraries/sentencepiece/default.nix index 41226865421..e918a3b3d1d 100644 --- a/pkgs/development/libraries/sentencepiece/default.nix +++ b/pkgs/development/libraries/sentencepiece/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "sentencepiece"; - version = "0.1.91"; + version = "0.1.94"; src = fetchFromGitHub { owner = "google"; repo = pname; rev = "v${version}"; - sha256 = "1yg55h240iigjaii0k70mjb4sh3mgg54rp2sz8bx5glnsjwys5s3"; + sha256 = "sha256:11cqw4hx33gw2jmrg11jyp7fj9pwzwjwzqcn24jfsbgh6n8gks5x"; }; nativeBuildInputs = [ cmake ] ++ lib.optional withGPerfTools gperftools; diff --git a/pkgs/development/libraries/serialdv/default.nix b/pkgs/development/libraries/serialdv/default.nix index d711cd9fc80..47d4e68f658 100644 --- a/pkgs/development/libraries/serialdv/default.nix +++ b/pkgs/development/libraries/serialdv/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake ]; meta = with stdenv.lib; { - description = "C++ Minimal interface to encode and decode audio with AMBE3000 based devices in packet mode over a serial link."; + description = "C++ Minimal interface to encode and decode audio with AMBE3000 based devices in packet mode over a serial link"; homepage = "https://github.com/f4exb/serialdv"; platforms = platforms.linux; maintainers = with maintainers; [ alkeryn ]; diff --git a/pkgs/development/libraries/socket_wrapper/default.nix b/pkgs/development/libraries/socket_wrapper/default.nix index e6095ca82c5..188405365cd 100644 --- a/pkgs/development/libraries/socket_wrapper/default.nix +++ b/pkgs/development/libraries/socket_wrapper/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, cmake, pkgconfig }: stdenv.mkDerivation rec { - name = "socket_wrapper-1.2.4"; + name = "socket_wrapper-1.2.5"; src = fetchurl { url = "mirror://samba/cwrap/${name}.tar.gz"; - sha256 = "07m0g5sxjl15h8h95ppf42mkilp9h1xc9camryg8l9bw8b2v8m4a"; + sha256 = "1wb3gq0rj5h92mhq6f1hb2qy4ypkxvn8y87ag88c7gc71nkpa1fx"; }; nativeBuildInputs = [ cmake pkgconfig ]; diff --git a/pkgs/development/libraries/sope/default.nix b/pkgs/development/libraries/sope/default.nix index 59205a949e4..b24b0b9bcd4 100644 --- a/pkgs/development/libraries/sope/default.nix +++ b/pkgs/development/libraries/sope/default.nix @@ -41,7 +41,7 @@ gnustep.stdenv.mkDerivation rec { ''; meta = { - description = "SOPE is an extensive set of frameworks which form a complete Web application server environment"; + description = "An extensive set of frameworks which form a complete Web application server environment"; license = licenses.publicDomain; homepage = "https://github.com/inverse-inc/sope"; platforms = platforms.linux; diff --git a/pkgs/development/libraries/spirv-headers/default.nix b/pkgs/development/libraries/spirv-headers/default.nix index 86a7ab048fa..79b8e7c2dda 100644 --- a/pkgs/development/libraries/spirv-headers/default.nix +++ b/pkgs/development/libraries/spirv-headers/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "spirv-headers"; - version = "1.5.1"; + version = "1.5.3"; src = fetchFromGitHub { owner = "KhronosGroup"; repo = "SPIRV-Headers"; rev = version; - sha256 = "1fnd8qwss6pxcch5j9qi1pdz70828zxsg4m8apgrhyj0p9lm0rbg"; + sha256 = "069sivqajp7z4p44lmrz23lvf237xpkjxd4lzrg27836pwqcz9bj"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/srt/default.nix b/pkgs/development/libraries/srt/default.nix index 32c3135cd4f..6947c674a91 100644 --- a/pkgs/development/libraries/srt/default.nix +++ b/pkgs/development/libraries/srt/default.nix @@ -4,13 +4,13 @@ with stdenv.lib; stdenv.mkDerivation rec { pname = "srt"; - version = "1.4.1"; + version = "1.4.2"; src = fetchFromGitHub { owner = "Haivision"; repo = "srt"; rev = "v${version}"; - sha256 = "01xaq44j95kbgqfl41pnybvqy0yq6wd4wdw88ckylzf0nzp977xz"; + sha256 = "01nx3a35hzq2x0dvp2n2b86phpdy1z83kdraag7aq3hmc7f8iagg"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/symengine/default.nix b/pkgs/development/libraries/symengine/default.nix index 524958e51a2..6ab463bea1d 100644 --- a/pkgs/development/libraries/symengine/default.nix +++ b/pkgs/development/libraries/symengine/default.nix @@ -37,7 +37,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "SymEngine is a fast symbolic manipulation library"; + description = "A fast symbolic manipulation library"; homepage = "https://github.com/symengine/symengine"; platforms = platforms.unix ++ platforms.windows; license = licenses.bsd3; diff --git a/pkgs/development/libraries/taglib/default.nix b/pkgs/development/libraries/taglib/default.nix index c553405878f..28373605a6b 100644 --- a/pkgs/development/libraries/taglib/default.nix +++ b/pkgs/development/libraries/taglib/default.nix @@ -43,7 +43,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://taglib.org/"; repositories.git = "git://github.com/taglib/taglib.git"; - description = "A library for reading and editing audio file metadata."; + description = "A library for reading and editing audio file metadata"; longDescription = '' TagLib is a library for reading and editing the meta-data of several popular audio formats. Currently it supports both ID3v1 and ID3v2 for MP3 diff --git a/pkgs/development/libraries/ti-rpc/default.nix b/pkgs/development/libraries/ti-rpc/default.nix index db434a5e62e..3d163ef6ded 100644 --- a/pkgs/development/libraries/ti-rpc/default.nix +++ b/pkgs/development/libraries/ti-rpc/default.nix @@ -1,21 +1,19 @@ { fetchurl, stdenv, autoreconfHook, libkrb5 }: stdenv.mkDerivation rec { - name = "libtirpc-1.2.6"; + pname = "libtirpc"; + version = "1.2.7-rc4"; src = fetchurl { - url = "mirror://sourceforge/libtirpc/${name}.tar.bz2"; - sha256 = "1k6i6wma3xs7gmp54z587nd4yi5wrvg2ycl5g36zjnhx32jyjy22"; + url = "http://git.linux-nfs.org/?p=steved/libtirpc.git;a=snapshot;h=5ca4ca92f629d9d83e83544b9239abaaacf0a527;sf=tgz"; + sha256 = "0w26yf9bwkpqj52sqd3n250dg9jlqnr8bjv0kc4fl5hkrv8akj8i"; + name = "${pname}-${version}.tar.gz"; }; outputs = [ "out" "dev" ]; postPatch = '' sed '1i#include ' -i src/xdr_sizeof.c - '' + stdenv.lib.optionalString stdenv.hostPlatform.isMusl '' - substituteInPlace tirpc/rpc/types.h \ - --replace '#if defined __APPLE_CC__ || defined __FreeBSD__' \ - '#if defined __APPLE_CC__ || defined __FreeBSD__ || !defined __GLIBC__' ''; KRB5_CONFIG = "${libkrb5.dev}/bin/krb5-config"; diff --git a/pkgs/development/libraries/tllist/default.nix b/pkgs/development/libraries/tllist/default.nix index a17b3e415d5..9134ade0e18 100644 --- a/pkgs/development/libraries/tllist/default.nix +++ b/pkgs/development/libraries/tllist/default.nix @@ -2,18 +2,20 @@ stdenv.mkDerivation rec { pname = "tllist"; - version = "1.0.2"; + version = "1.0.4"; src = fetchgit { url = "https://codeberg.org/dnkl/tllist.git"; - rev = "${version}"; - sha256 = "095wly66z9n2r6h318rackgl4g1w9l1vj96367ngcw7rpva9yppl"; + rev = version; + sha256 = "sha256-+u8p/VmI61SGRhZHaJBwgcVNetNOrYzg2NVQehbfRqg="; }; nativeBuildInputs = [ meson ninja ]; + doCheck = true; + meta = with lib; { homepage = "https://codeberg.org/dnkl/tllist"; description = "C header file only implementation of a typed linked list"; diff --git a/pkgs/development/libraries/unqlite/default.nix b/pkgs/development/libraries/unqlite/default.nix new file mode 100644 index 00000000000..9d0ab386856 --- /dev/null +++ b/pkgs/development/libraries/unqlite/default.nix @@ -0,0 +1,39 @@ +{ stdenv +, fetchFromGitHub +, cmake }: + +stdenv.mkDerivation rec { + pname = "unqlite"; + version = "1.1.9"; + + src = fetchFromGitHub { + owner = "symisc"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-WLsyGEt7Xe6ZrOGMO7+3TU2sBgDTSmfD1WzD70pcDjo="; + }; + + nativeBuildInputs = [ cmake ]; + + meta = with stdenv.lib; { + homepage = "https://unqlite.org/"; + description = "Self-contained, serverless, zero-conf, transactional NoSQL DB library"; + longDescription = '' + UnQLite is a in-process software library which implements a + self-contained, serverless, zero-configuration, transactional NoSQL + database engine. UnQLite is a document store database similar to MongoDB, + Redis, CouchDB etc. as well a standard Key/Value store similar to + BerkeleyDB, LevelDB, etc. + + UnQLite is an embedded NoSQL (Key/Value store and Document-store) database + engine. Unlike most other NoSQL databases, UnQLite does not have a + separate server process. UnQLite reads and writes directly to ordinary + disk files. A complete database with multiple collections, is contained in + a single disk file. The database file format is cross-platform, you can + freely copy a database between 32-bit and 64-bit systems or between + big-endian and little-endian architectures. + ''; + maintainers = with maintainers; [ AndersonTorres ]; + license = licenses.bsd2; + }; +} diff --git a/pkgs/development/libraries/v8/default.nix b/pkgs/development/libraries/v8/default.nix index 60e856e61df..e6696626cb5 100644 --- a/pkgs/development/libraries/v8/default.nix +++ b/pkgs/development/libraries/v8/default.nix @@ -80,7 +80,7 @@ stdenv.mkDerivation rec { gnFlags = [ "use_custom_libcxx=false" - "is_clang=${if stdenv.cc.isClang then "true" else "false"}" + "is_clang=${lib.boolToString stdenv.cc.isClang}" "use_sysroot=false" # "use_system_icu=true" "is_component_build=false" diff --git a/pkgs/development/libraries/vsqlite/default.nix b/pkgs/development/libraries/vsqlite/default.nix index e54a4a40af1..a4c9cb556b9 100644 --- a/pkgs/development/libraries/vsqlite/default.nix +++ b/pkgs/development/libraries/vsqlite/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "http://vsqlite.virtuosic-bytes.com/"; - description = "C++ wrapper library for sqlite."; + description = "C++ wrapper library for sqlite"; license = licenses.bsd3; platforms = platforms.unix; }; diff --git a/pkgs/development/libraries/vulkan-headers/default.nix b/pkgs/development/libraries/vulkan-headers/default.nix index 33926940904..317a5059aec 100644 --- a/pkgs/development/libraries/vulkan-headers/default.nix +++ b/pkgs/development/libraries/vulkan-headers/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchFromGitHub, cmake }: stdenv.mkDerivation rec { pname = "vulkan-headers"; - version = "1.2.131.1"; + version = "1.2.141.0"; nativeBuildInputs = [ cmake ]; @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { owner = "KhronosGroup"; repo = "Vulkan-Headers"; rev = "sdk-${version}"; - sha256 = "1yf42c2cnhx1y4wkxsdl6g653xl2vvamhpkldz6jb4ca5wk03gxf"; + sha256 = "10nmx6y4llllfcczyfz76amd0vkqv09dj952d19zkzmmgcval7zq"; }; meta = with stdenv.lib; { diff --git a/pkgs/development/libraries/vulkan-loader/default.nix b/pkgs/development/libraries/vulkan-loader/default.nix index 8b5aa742863..8f974307cda 100644 --- a/pkgs/development/libraries/vulkan-loader/default.nix +++ b/pkgs/development/libraries/vulkan-loader/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "vulkan-loader"; - version = "1.2.131.2"; + version = "1.2.141.0"; src = fetchFromGitHub { owner = "KhronosGroup"; repo = "Vulkan-Loader"; rev = "sdk-${version}"; - sha256 = "12n4mxc6db89258k8i47ql1zna7k94lkwv7lpxg39nm8ypa1ywrv"; + sha256 = "10fyg71dza6qakz5zdchccfn0zcr8b1zpfi2rqir6jpzcbi28kcj"; }; nativeBuildInputs = [ pkgconfig cmake ]; diff --git a/pkgs/development/libraries/x265/default.nix b/pkgs/development/libraries/x265/default.nix index 34f5d158592..9d501f47c3b 100644 --- a/pkgs/development/libraries/x265/default.nix +++ b/pkgs/development/libraries/x265/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, fetchpatch, cmake, nasm, numactl +{ stdenv, fetchFromBitbucket, cmake, nasm, numactl , numaSupport ? stdenv.hostPlatform.isLinux && (stdenv.hostPlatform.isx86 || stdenv.hostPlatform.isAarch64) # Enabled by default on NUMA platforms , debugSupport ? false # Run-time sanity checks (debugging) , werrorSupport ? false # Warnings as errors @@ -25,31 +25,23 @@ let "-DENABLE_ALTIVEC=OFF" ]; - version = "3.2"; + version = "3.4"; - src = fetchurl { - urls = [ - "https://get.videolan.org/x265/x265_${version}.tar.gz" - "ftp://ftp.videolan.org/pub/videolan/x265/x265_${version}.tar.gz" - ]; - sha256 = "0fqkhfhr22gzavxn60cpnj3agwdf5afivszxf3haj5k1sny7jk9n"; + src = fetchFromBitbucket { + owner = "multicoreware"; + repo = "x265_git"; + rev = "${version}"; + sha256 = "1jzgv2hxhcwmsdf6sbgyzm88a46dp09ll1fqj92g9vckvh9a7dsn"; }; - patches = [ - # Fix build on ARM (#406) - (fetchpatch { - url = "https://bitbucket.org/multicoreware/x265/issues/attachments/406/multicoreware/x265/1527562952.26/406/X265-2.8-asm-primitives.patch"; - sha256 = "1vf8bpl37gbd9dcbassgkq9i0rp24qm3bl6hx9zv325174bn402v"; - }) - ]; - buildLib = has12Bit: stdenv.mkDerivation rec { name = "libx265-${if has12Bit then "12" else "10"}-${version}"; - inherit src patches; + inherit src; enableParallelBuilding = true; postPatch = '' sed -i 's/unknown/${version}/g' source/cmake/version.cmake + sed -i 's/0.0/${version}/g' source/cmake/version.cmake ''; cmakeLibFlags = [ @@ -74,19 +66,20 @@ in stdenv.mkDerivation rec { pname = "x265"; - inherit version src patches; + inherit version src; enableParallelBuilding = true; postPatch = '' sed -i 's/unknown/${version}/g' source/cmake/version.cmake + sed -i 's/0.0/${version}/g' source/cmake/version.cmake ''; cmakeFlags = [ "-DENABLE_SHARED=ON" "-DHIGH_BIT_DEPTH=OFF" "-DENABLE_HDR10_PLUS=OFF" - ] ++ stdenv.lib.optionals is64bit [ + ] ++ stdenv.lib.optionals (is64bit && !(stdenv.isAarch64 && stdenv.isLinux)) [ "-DEXTRA_LIB=${libx265-10}/lib/libx265.a;${libx265-12}/lib/libx265.a" "-DLINKED_10BIT=ON" "-DLINKED_12BIT=ON" diff --git a/pkgs/development/lisp-modules/README.txt b/pkgs/development/lisp-modules/README.txt index c55fb9b1a7c..08452d979ad 100644 --- a/pkgs/development/lisp-modules/README.txt +++ b/pkgs/development/lisp-modules/README.txt @@ -1,7 +1,15 @@ Want to add a package? There are 3 simple steps! 1. Add the needed system names to quicklisp-to-nix-systems.txt. 2. cd ; nix-shell --run 'quicklisp-to-nix .' + You might want to specify also the --cacheSystemInfoDir and --cacheFaslDir + parameters to preserve some data between runs. For example, it is very + useful when you add new packages with native dependencies and fail to + specify the native dependencies correctly the first time. + (Might be nice to ensure the cache directories exist) 3. Add native libraries and whatever else is needed to quicklisp-to-nix-overrides.nix. +4. Sometimes there are problems with loading implementation-provided systems. + In this case you might need to add more systems in the implementation's (so + SBCL's) entry into *implementation-systems* in quicklisp-to-nix/system-info.lisp To update to a more recent quicklisp dist modify lispPackages.quicklisp to have a more recent distinfo. diff --git a/pkgs/development/lisp-modules/clwrapper/cl-wrapper.sh b/pkgs/development/lisp-modules/clwrapper/cl-wrapper.sh index 9836bbe5642..828920c5acc 100755 --- a/pkgs/development/lisp-modules/clwrapper/cl-wrapper.sh +++ b/pkgs/development/lisp-modules/clwrapper/cl-wrapper.sh @@ -95,8 +95,8 @@ nix_lisp_run_single_form(){ nix_lisp_build_system(){ NIX_LISP_FINAL_PARAMETERS=( "$NIX_LISP_EXEC_CODE" "(progn - (asdf:make :$1) - (loop for s in (list $(for i in $3; do echo ":$i"; done)) do (asdf:make s)))" + (asdf:load-system :$1) + (loop for s in (list $(for i in $3; do echo ":$i"; done)) do (asdf:load-system s)))" "$NIX_LISP_EXEC_CODE" "(progn (setf (asdf/system:component-entry-point (asdf:find-system :$1)) ${2:-nil}) #+cffi(setf cffi:*foreign-library-directories* @@ -106,15 +106,19 @@ nix_lisp_build_system(){ :separator \":\") for l in sb-alien::*shared-objects* for ns := (sb-alien::shared-object-namestring l) + do (format *error-output* \"Searching alien object ~s in ~s~%\" + ns libpath) do (and (> (length ns) 0) (not (equal (elt ns 0) \"/\")) (let* ((prefix (find-if (lambda (s) (probe-file (format nil \"~a/~a\" s ns))) libpath)) (fullpath (and prefix (format nil \"~a/~a\" prefix ns)))) (when fullpath + (format *error-output* \"Found: ~s~%\" fullpath) (setf (sb-alien::shared-object-namestring l) fullpath (sb-alien::shared-object-pathname l) (probe-file fullpath))))) ) + $4 (asdf:perform (quote asdf:program-op) :$1) )") } diff --git a/pkgs/development/lisp-modules/lisp-packages.nix b/pkgs/development/lisp-modules/lisp-packages.nix index e6840e93bf3..f8338e48e19 100644 --- a/pkgs/development/lisp-modules/lisp-packages.nix +++ b/pkgs/development/lisp-modules/lisp-packages.nix @@ -24,8 +24,8 @@ let lispPackages = rec { quicklispdist = pkgs.fetchurl { # Will usually be replaced with a fresh version anyway, but needs to be # a valid distinfo.txt - url = "https://beta.quicklisp.org/dist/quicklisp/2019-12-27/distinfo.txt"; - sha256 = "0fz0k7ydmddxvxyid0nkifap21n6bxap602qhqsac2dxglv3i4cs"; + url = "https://beta.quicklisp.org/dist/quicklisp/2020-10-16/distinfo.txt"; + sha256 = "sha256:090xjcnyqcv8az9n1a7m0f6vzz2nwcncy95ha7ixb7fnd2rj1n65"; }; buildPhase = '' true; ''; postInstall = '' @@ -77,5 +77,130 @@ let lispPackages = rec { ''; dontStrip = true; }; + + clx-truetype = buildLispPackage rec { + baseName = "clx-truetype"; + version = ''20160825-git''; + + buildSystems = [ "clx-truetype" ]; + parasites = [ "clx-truetype-test" ]; + + description = ''clx-truetype is pure common lisp solution for antialiased TrueType font rendering using CLX and XRender extension.''; + deps = with pkgs.lispPackages; [ + alexandria bordeaux-threads cl-aa cl-fad cl-paths cl-paths-ttf cl-store + cl-vectors clx trivial-features zpb-ttf + ]; + src = pkgs.fetchurl { + url = ''http://beta.quicklisp.org/archive/clx-truetype/2016-08-25/clx-truetype-20160825-git.tgz''; + sha256 = ''0ndy067rg9w6636gxwlpnw7f3ck9nrnjb03444pprik9r3c9in67''; + }; + + packageName = "clx-truetype"; + + asdFilesToKeep = ["clx-truetype.asd"]; + }; + cluffer = buildLispPackage rec { + baseName = "cluffer"; + version = "2018-09-24"; + + buildSystems = [ "cluffer-base" "cluffer-simple-buffer" "cluffer-simple-line" "cluffer-standard-buffer" "cluffer-standard-line" "cluffer" ]; + parasites = [ "cluffer-test" ]; + + description = "General purpose text-editor buffer"; + deps = with pkgs.lispPackages; [ + acclimation clump + ]; + src = pkgs.fetchFromGitHub { + owner = "robert-strandh"; + repo = "cluffer"; + rev = "4aad29c276a58a593064e79972ee4d77cae0af4a"; + sha256 = "1bcg13g7qb3dr8z50aihdjqa6miz5ivlc9wsj2csgv1km1mak2kj"; + # date = 2018-09-24T04:45:36+02:00; + }; + + packageName = "cluffer"; + + asdFilesToKeep = [ "cluffer.asd" "cluffer-base.asd" "cluffer-simple-buffer.asd" "cluffer-simple-line.asd" "cluffer-standard-buffer.asd" "cluffer-standard-line.asd" ]; + }; + nyxt = pkgs.lispPackages.buildLispPackage rec { + baseName = "nyxt"; + version = "2020-10-23"; + + buildSystems = [ "nyxt" "nyxt-ext" ]; + + description = "Browser"; + + overrides = x: { + postInstall = '' + echo "Building nyxt binary" + NIX_LISP_PRELAUNCH_HOOK=' + nix_lisp_build_system nyxt/gtk-application \ + "(asdf/system:component-entry-point (asdf:find-system :nyxt/gtk-application))" \ + "" "(format *error-output* \"Alien objects:~%~s~%\" sb-alien::*shared-objects*)" + ' "$out/bin/nyxt-lisp-launcher.sh" + cp "$out/lib/common-lisp/nyxt/nyxt" "$out/bin/" + ''; + }; + + deps = with pkgs.lispPackages; [ + alexandria + bordeaux-threads + chanl + cl-annot + cl-ansi-text + cl-containers + cl-css + cl-json + cl-markup + cl-ppcre + cl-ppcre-unicode + cl-prevalence + cl-webkit2 + closer-mop + cluffer + dbus + dexador + enchant + fset + hu_dot_dwim_dot_defclass-star + ironclad + local-time + log4cl + lparallel + mk-string-metrics + osicat + parenscript + plump + prove-asdf + quri + serapeum + sqlite + str + swank + trivia + trivial-clipboard + trivial-features + trivial-package-local-nicknames + trivial-types + unix-opts + ]; + src = pkgs.fetchFromGitHub { + owner = "atlas-engineer"; + repo = "nyxt"; + rev = "f744af5233b3636460ce71650de2b0c7dcb9fa8e"; + sha256 = "1m4jic7nbm2jmxlm8k0zqg62z91g2f2s86by086brgfw056idjmz"; + # date = 2020-10-23T19:06:04+02:00; + }; + + packageName = "nyxt"; + + asdFilesToKeep = [ "nyxt.asd" "nyxt-ext.asd" ]; + + propagatedBuildInputs = [ + pkgs.libressl.out + pkgs.webkitgtk + pkgs.sbcl + ]; + }; }; in lispPackages diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/_3bmd-ext-code-blocks.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/_3bmd-ext-code-blocks.nix new file mode 100644 index 00000000000..6c08e0e1c95 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/_3bmd-ext-code-blocks.nix @@ -0,0 +1,34 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''_3bmd-ext-code-blocks''; + version = ''3bmd-20200925-git''; + + description = ''extension to 3bmd implementing github style ``` delimited code blocks, with support for syntax highlighting using colorize, pygments, or chroma''; + + deps = [ args."_3bmd" args."alexandria" args."colorize" args."esrap" args."html-encode" args."split-sequence" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/3bmd/2020-09-25/3bmd-20200925-git.tgz''; + sha256 = ''0sk4b0xma4vv6ssiskbz7h5bw8v8glm34mbv3llqywb50b9ks4fw''; + }; + + packageName = "3bmd-ext-code-blocks"; + + asdFilesToKeep = ["3bmd-ext-code-blocks.asd"]; + overrides = x: x; +} +/* (SYSTEM 3bmd-ext-code-blocks DESCRIPTION + extension to 3bmd implementing github style ``` delimited code blocks, with support for syntax highlighting using colorize, pygments, or chroma + SHA256 0sk4b0xma4vv6ssiskbz7h5bw8v8glm34mbv3llqywb50b9ks4fw URL + http://beta.quicklisp.org/archive/3bmd/2020-09-25/3bmd-20200925-git.tgz MD5 + 3b2c0b2094e473234742d150ac84abdd NAME 3bmd-ext-code-blocks FILENAME + _3bmd-ext-code-blocks DEPS + ((NAME 3bmd FILENAME _3bmd) (NAME alexandria FILENAME alexandria) + (NAME colorize FILENAME colorize) (NAME esrap FILENAME esrap) + (NAME html-encode FILENAME html-encode) + (NAME split-sequence FILENAME split-sequence)) + DEPENDENCIES (3bmd alexandria colorize esrap html-encode split-sequence) + VERSION 3bmd-20200925-git SIBLINGS + (3bmd-ext-definition-lists 3bmd-ext-math 3bmd-ext-tables + 3bmd-ext-wiki-links 3bmd-youtube-tests 3bmd-youtube 3bmd) + PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/_3bmd.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/_3bmd.nix index a5fddd417fa..dd1959893fd 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/_3bmd.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/_3bmd.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''_3bmd''; - version = ''20171019-git''; + version = ''20200925-git''; description = ''markdown processor in CL using esrap parser.''; deps = [ args."alexandria" args."esrap" args."split-sequence" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/3bmd/2017-10-19/3bmd-20171019-git.tgz''; - sha256 = ''1lrh1ypn9wrjcayi9vc706knac1vsxlrzlsxq73apdc7jx4wzywz''; + url = ''http://beta.quicklisp.org/archive/3bmd/2020-09-25/3bmd-20200925-git.tgz''; + sha256 = ''0sk4b0xma4vv6ssiskbz7h5bw8v8glm34mbv3llqywb50b9ks4fw''; }; packageName = "3bmd"; @@ -18,13 +18,13 @@ rec { overrides = x: x; } /* (SYSTEM 3bmd DESCRIPTION markdown processor in CL using esrap parser. SHA256 - 1lrh1ypn9wrjcayi9vc706knac1vsxlrzlsxq73apdc7jx4wzywz URL - http://beta.quicklisp.org/archive/3bmd/2017-10-19/3bmd-20171019-git.tgz MD5 - d691962a511f2edc15f4fc228ecdf546 NAME 3bmd FILENAME _3bmd DEPS + 0sk4b0xma4vv6ssiskbz7h5bw8v8glm34mbv3llqywb50b9ks4fw URL + http://beta.quicklisp.org/archive/3bmd/2020-09-25/3bmd-20200925-git.tgz MD5 + 3b2c0b2094e473234742d150ac84abdd NAME 3bmd FILENAME _3bmd DEPS ((NAME alexandria FILENAME alexandria) (NAME esrap FILENAME esrap) (NAME split-sequence FILENAME split-sequence)) - DEPENDENCIES (alexandria esrap split-sequence) VERSION 20171019-git + DEPENDENCIES (alexandria esrap split-sequence) VERSION 20200925-git SIBLINGS - (3bmd-ext-code-blocks 3bmd-ext-definition-lists 3bmd-ext-tables - 3bmd-ext-wiki-links 3bmd-youtube-tests 3bmd-youtube) + (3bmd-ext-code-blocks 3bmd-ext-definition-lists 3bmd-ext-math + 3bmd-ext-tables 3bmd-ext-wiki-links 3bmd-youtube-tests 3bmd-youtube) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/abnf.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/abnf.nix deleted file mode 100644 index cbfcb6f4361..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/abnf.nix +++ /dev/null @@ -1,27 +0,0 @@ -args @ { fetchurl, ... }: -{ - baseName = ''abnf''; - version = ''cl-20150608-git''; - - description = ''ABNF Parser Generator, per RFC2234''; - - deps = [ args."alexandria" args."cl-ppcre" args."esrap" ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-abnf/2015-06-08/cl-abnf-20150608-git.tgz''; - sha256 = ''00x95h7v5q7azvr9wrpcfcwsq3sdipjr1hgq9a9lbimp8gfbz687''; - }; - - packageName = "abnf"; - - asdFilesToKeep = ["abnf.asd"]; - overrides = x: x; -} -/* (SYSTEM abnf DESCRIPTION ABNF Parser Generator, per RFC2234 SHA256 - 00x95h7v5q7azvr9wrpcfcwsq3sdipjr1hgq9a9lbimp8gfbz687 URL - http://beta.quicklisp.org/archive/cl-abnf/2015-06-08/cl-abnf-20150608-git.tgz - MD5 311c2b17e49666dac1c2bb45256be708 NAME abnf FILENAME abnf DEPS - ((NAME alexandria FILENAME alexandria) (NAME cl-ppcre FILENAME cl-ppcre) - (NAME esrap FILENAME esrap)) - DEPENDENCIES (alexandria cl-ppcre esrap) VERSION cl-20150608-git SIBLINGS - NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/access.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/access.nix new file mode 100644 index 00000000000..deb0c7f89cb --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/access.nix @@ -0,0 +1,39 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''access''; + version = ''20151218-git''; + + parasites = [ "access-test" ]; + + description = ''A library providing functions that unify data-structure access for Common Lisp: + access and (setf access)''; + + deps = [ args."alexandria" args."anaphora" args."cl-interpol" args."cl-ppcre" args."cl-unicode" args."closer-mop" args."flexi-streams" args."iterate" args."lisp-unit2" args."named-readtables" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/access/2015-12-18/access-20151218-git.tgz''; + sha256 = ''0f4257cxd1rpp46wm2qbnk0ynlc3dli9ib4qbn45hglh8zy7snfl''; + }; + + packageName = "access"; + + asdFilesToKeep = ["access.asd"]; + overrides = x: x; +} +/* (SYSTEM access DESCRIPTION + A library providing functions that unify data-structure access for Common Lisp: + access and (setf access) + SHA256 0f4257cxd1rpp46wm2qbnk0ynlc3dli9ib4qbn45hglh8zy7snfl URL + http://beta.quicklisp.org/archive/access/2015-12-18/access-20151218-git.tgz + MD5 a6f1eb4a1823b04c6db4fa2dc16d648f NAME access FILENAME access DEPS + ((NAME alexandria FILENAME alexandria) (NAME anaphora FILENAME anaphora) + (NAME cl-interpol FILENAME cl-interpol) (NAME cl-ppcre FILENAME cl-ppcre) + (NAME cl-unicode FILENAME cl-unicode) + (NAME closer-mop FILENAME closer-mop) + (NAME flexi-streams FILENAME flexi-streams) + (NAME iterate FILENAME iterate) (NAME lisp-unit2 FILENAME lisp-unit2) + (NAME named-readtables FILENAME named-readtables)) + DEPENDENCIES + (alexandria anaphora cl-interpol cl-ppcre cl-unicode closer-mop + flexi-streams iterate lisp-unit2 named-readtables) + VERSION 20151218-git SIBLINGS NIL PARASITES (access-test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/acclimation.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/acclimation.nix new file mode 100644 index 00000000000..f93506505a1 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/acclimation.nix @@ -0,0 +1,25 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''acclimation''; + version = ''20200925-git''; + + description = ''Library supporting internationalization''; + + deps = [ ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/acclimation/2020-09-25/acclimation-20200925-git.tgz''; + sha256 = ''11vw1h5zxicj5qxb1smiyjxafw8xk0isnzcf5g0lqis3y9ssqxbw''; + }; + + packageName = "acclimation"; + + asdFilesToKeep = ["acclimation.asd"]; + overrides = x: x; +} +/* (SYSTEM acclimation DESCRIPTION Library supporting internationalization + SHA256 11vw1h5zxicj5qxb1smiyjxafw8xk0isnzcf5g0lqis3y9ssqxbw URL + http://beta.quicklisp.org/archive/acclimation/2020-09-25/acclimation-20200925-git.tgz + MD5 8ce10864baef6fb0e11c78e2ee0b0ddb NAME acclimation FILENAME acclimation + DEPS NIL DEPENDENCIES NIL VERSION 20200925-git SIBLINGS + (acclimation-temperature) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/alexandria.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/alexandria.nix index 1bbd82ba536..7f257bc4baf 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/alexandria.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/alexandria.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''alexandria''; - version = ''20191227-git''; + version = ''20200925-git''; description = ''Alexandria is a collection of portable public domain utilities.''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/alexandria/2019-12-27/alexandria-20191227-git.tgz''; - sha256 = ''1vq19i7mcx3dk8vd8l92ld33birs9qhwcs7hbwwphvrwsrxbnd89''; + url = ''http://beta.quicklisp.org/archive/alexandria/2020-09-25/alexandria-20200925-git.tgz''; + sha256 = ''1cpvnzfs807ah07hrk8kplim6ryzqs4r35ym03cpky5xdl8c89fl''; }; packageName = "alexandria"; @@ -19,8 +19,8 @@ rec { } /* (SYSTEM alexandria DESCRIPTION Alexandria is a collection of portable public domain utilities. SHA256 - 1vq19i7mcx3dk8vd8l92ld33birs9qhwcs7hbwwphvrwsrxbnd89 URL - http://beta.quicklisp.org/archive/alexandria/2019-12-27/alexandria-20191227-git.tgz - MD5 634105318a9c82a2a2729d0305c91667 NAME alexandria FILENAME alexandria - DEPS NIL DEPENDENCIES NIL VERSION 20191227-git SIBLINGS (alexandria-tests) + 1cpvnzfs807ah07hrk8kplim6ryzqs4r35ym03cpky5xdl8c89fl URL + http://beta.quicklisp.org/archive/alexandria/2020-09-25/alexandria-20200925-git.tgz + MD5 59c8237a854de6f4f93328cd5747cd14 NAME alexandria FILENAME alexandria + DEPS NIL DEPENDENCIES NIL VERSION 20200925-git SIBLINGS (alexandria-tests) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/arnesi.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/arnesi.nix new file mode 100644 index 00000000000..97ae196c0f5 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/arnesi.nix @@ -0,0 +1,34 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''arnesi''; + version = ''20170403-git''; + + parasites = [ "arnesi/cl-ppcre-extras" "arnesi/slime-extras" ]; + + description = ''A bag-of-tools utilities library used to aid in implementing the bese.it toolkit''; + + deps = [ args."alexandria" args."cl-ppcre" args."closer-mop" args."collectors" args."iterate" args."swank" args."symbol-munger" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/arnesi/2017-04-03/arnesi-20170403-git.tgz''; + sha256 = ''01kirjpgv5pgbcdxjrnw3ld4jw7wrqm3rgqnxwac4gxaphr2s6q4''; + }; + + packageName = "arnesi"; + + asdFilesToKeep = ["arnesi.asd"]; + overrides = x: x; +} +/* (SYSTEM arnesi DESCRIPTION + A bag-of-tools utilities library used to aid in implementing the bese.it toolkit + SHA256 01kirjpgv5pgbcdxjrnw3ld4jw7wrqm3rgqnxwac4gxaphr2s6q4 URL + http://beta.quicklisp.org/archive/arnesi/2017-04-03/arnesi-20170403-git.tgz + MD5 bbb34e1a646b2cc489766690c741d964 NAME arnesi FILENAME arnesi DEPS + ((NAME alexandria FILENAME alexandria) (NAME cl-ppcre FILENAME cl-ppcre) + (NAME closer-mop FILENAME closer-mop) + (NAME collectors FILENAME collectors) (NAME iterate FILENAME iterate) + (NAME swank FILENAME swank) (NAME symbol-munger FILENAME symbol-munger)) + DEPENDENCIES + (alexandria cl-ppcre closer-mop collectors iterate swank symbol-munger) + VERSION 20170403-git SIBLINGS NIL PARASITES + (arnesi/cl-ppcre-extras arnesi/slime-extras)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/asdf-finalizers.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/asdf-finalizers.nix deleted file mode 100644 index 482752f2c7f..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/asdf-finalizers.nix +++ /dev/null @@ -1,26 +0,0 @@ -{ fetchurl, ... }: -{ - baseName = ''asdf-finalizers''; - version = ''20170403-git''; - - description = ''Enforced calling of finalizers for Lisp code''; - - deps = [ ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/asdf-finalizers/2017-04-03/asdf-finalizers-20170403-git.tgz''; - sha256 = ''1w2ka0123icbjba7ngdd6h93j72g236h6jw4bsmvsak69fj0ybxj''; - }; - - packageName = "asdf-finalizers"; - - asdFilesToKeep = ["asdf-finalizers.asd"]; - overrides = x: x; -} -/* (SYSTEM asdf-finalizers DESCRIPTION - Enforced calling of finalizers for Lisp code SHA256 - 1w2ka0123icbjba7ngdd6h93j72g236h6jw4bsmvsak69fj0ybxj URL - http://beta.quicklisp.org/archive/asdf-finalizers/2017-04-03/asdf-finalizers-20170403-git.tgz - MD5 a9e3c960e6b6fdbd69640b520ef8044b NAME asdf-finalizers FILENAME - asdf-finalizers DEPS NIL DEPENDENCIES NIL VERSION 20170403-git SIBLINGS - (asdf-finalizers-test list-of) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/babel-streams.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/babel-streams.nix deleted file mode 100644 index 5251cbc920f..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/babel-streams.nix +++ /dev/null @@ -1,30 +0,0 @@ -args @ { fetchurl, ... }: -{ - baseName = ''babel-streams''; - version = ''babel-20171227-git''; - - description = ''Some useful streams based on Babel's encoding code''; - - deps = [ args."alexandria" args."babel" args."trivial-features" args."trivial-gray-streams" ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/babel/2017-12-27/babel-20171227-git.tgz''; - sha256 = ''166y6j9ma1vxzy5bcwnbi37zwgn2zssx5x1q7zr63kyj2caiw2rf''; - }; - - packageName = "babel-streams"; - - asdFilesToKeep = ["babel-streams.asd"]; - overrides = x: x; -} -/* (SYSTEM babel-streams DESCRIPTION - Some useful streams based on Babel's encoding code SHA256 - 166y6j9ma1vxzy5bcwnbi37zwgn2zssx5x1q7zr63kyj2caiw2rf URL - http://beta.quicklisp.org/archive/babel/2017-12-27/babel-20171227-git.tgz - MD5 8ea39f73873847907a8bb67f99f16ecd NAME babel-streams FILENAME - babel-streams DEPS - ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) - (NAME trivial-features FILENAME trivial-features) - (NAME trivial-gray-streams FILENAME trivial-gray-streams)) - DEPENDENCIES (alexandria babel trivial-features trivial-gray-streams) - VERSION babel-20171227-git SIBLINGS (babel-tests babel) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/babel.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/babel.nix index 661a337da84..5a362fc1f03 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/babel.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/babel.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''babel''; - version = ''20191130-git''; + version = ''20200925-git''; description = ''Babel, a charset conversion library.''; deps = [ args."alexandria" args."trivial-features" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/babel/2019-11-30/babel-20191130-git.tgz''; - sha256 = ''0rnb7waq3fi51g2fxrazkyr2fmksqp0syjhni005vzzlbykmkavd''; + url = ''http://beta.quicklisp.org/archive/babel/2020-09-25/babel-20200925-git.tgz''; + sha256 = ''1hpjm2whw7zla9igzj50y3nibii0mfg2a6y6nslaf5vpkni88jfi''; }; packageName = "babel"; @@ -18,10 +18,10 @@ rec { overrides = x: x; } /* (SYSTEM babel DESCRIPTION Babel, a charset conversion library. SHA256 - 0rnb7waq3fi51g2fxrazkyr2fmksqp0syjhni005vzzlbykmkavd URL - http://beta.quicklisp.org/archive/babel/2019-11-30/babel-20191130-git.tgz - MD5 80087c99fe351d24e56bb279a62effeb NAME babel FILENAME babel DEPS + 1hpjm2whw7zla9igzj50y3nibii0mfg2a6y6nslaf5vpkni88jfi URL + http://beta.quicklisp.org/archive/babel/2020-09-25/babel-20200925-git.tgz + MD5 7f64d3be80bcba19d9caeaede5dea6d8 NAME babel FILENAME babel DEPS ((NAME alexandria FILENAME alexandria) (NAME trivial-features FILENAME trivial-features)) - DEPENDENCIES (alexandria trivial-features) VERSION 20191130-git SIBLINGS + DEPENDENCIES (alexandria trivial-features) VERSION 20200925-git SIBLINGS (babel-streams babel-tests) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/bordeaux-threads.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/bordeaux-threads.nix index d53e238df82..cef514715e0 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/bordeaux-threads.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/bordeaux-threads.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''bordeaux-threads''; - version = ''v0.8.7''; + version = ''v0.8.8''; parasites = [ "bordeaux-threads/test" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."alexandria" args."fiveam" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/bordeaux-threads/2019-11-30/bordeaux-threads-v0.8.7.tgz''; - sha256 = ''1an8fgam16nyhfninm0gl8k666f93k9j7kwmg43g8qcimyaj3l6w''; + url = ''http://beta.quicklisp.org/archive/bordeaux-threads/2020-06-10/bordeaux-threads-v0.8.8.tgz''; + sha256 = ''1ppb7lvr796k1j4hi0jnp717v9zxy6vq4f5cyzgn7svg1ic6l0pp''; }; packageName = "bordeaux-threads"; @@ -21,10 +21,10 @@ rec { } /* (SYSTEM bordeaux-threads DESCRIPTION Bordeaux Threads makes writing portable multi-threaded apps simple. SHA256 - 1an8fgam16nyhfninm0gl8k666f93k9j7kwmg43g8qcimyaj3l6w URL - http://beta.quicklisp.org/archive/bordeaux-threads/2019-11-30/bordeaux-threads-v0.8.7.tgz - MD5 071b427dd047999ffe038a2ef848ac13 NAME bordeaux-threads FILENAME + 1ppb7lvr796k1j4hi0jnp717v9zxy6vq4f5cyzgn7svg1ic6l0pp URL + http://beta.quicklisp.org/archive/bordeaux-threads/2020-06-10/bordeaux-threads-v0.8.8.tgz + MD5 1922316721bcaa10142ed07c31b178e5 NAME bordeaux-threads FILENAME bordeaux-threads DEPS ((NAME alexandria FILENAME alexandria) (NAME fiveam FILENAME fiveam)) - DEPENDENCIES (alexandria fiveam) VERSION v0.8.7 SIBLINGS NIL PARASITES + DEPENDENCIES (alexandria fiveam) VERSION v0.8.8 SIBLINGS NIL PARASITES (bordeaux-threads/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/caveman.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/caveman.nix index 30b21ee93d2..c90021bbeec 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/caveman.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/caveman.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''caveman''; - version = ''20190813-git''; + version = ''20200325-git''; description = ''Web Application Framework for Common Lisp''; - deps = [ args."alexandria" args."anaphora" args."babel" args."bordeaux-threads" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."chipz" args."chunga" args."circular-streams" args."cl_plus_ssl" args."cl-annot" args."cl-ansi-text" args."cl-base64" args."cl-colors" args."cl-cookie" args."cl-emb" args."cl-fad" args."cl-ppcre" args."cl-project" args."cl-reexport" args."cl-syntax" args."cl-syntax-annot" args."cl-utilities" args."clack" args."clack-handler-hunchentoot" args."clack-socket" args."clack-test" args."clack-v1-compat" args."dexador" args."dissect" args."do-urlencode" args."fast-http" args."fast-io" args."flexi-streams" args."http-body" args."hunchentoot" args."ironclad" args."jonathan" args."lack" args."lack-component" args."lack-middleware-backtrace" args."lack-util" args."let-plus" args."local-time" args."map-set" args."marshal" args."md5" args."myway" args."named-readtables" args."nibbles" args."proc-parse" args."prove" args."quri" args."rfc2388" args."rove" args."smart-buffer" args."split-sequence" args."static-vectors" args."trivial-backtrace" args."trivial-features" args."trivial-garbage" args."trivial-gray-streams" args."trivial-mimes" args."trivial-types" args."usocket" args."xsubseq" ]; + deps = [ args."alexandria" args."anaphora" args."babel" args."bordeaux-threads" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."chipz" args."chunga" args."circular-streams" args."cl_plus_ssl" args."cl-annot" args."cl-ansi-text" args."cl-base64" args."cl-colors" args."cl-colors2" args."cl-cookie" args."cl-emb" args."cl-fad" args."cl-ppcre" args."cl-project" args."cl-reexport" args."cl-syntax" args."cl-syntax-annot" args."cl-utilities" args."clack" args."clack-handler-hunchentoot" args."clack-socket" args."clack-test" args."clack-v1-compat" args."dexador" args."dissect" args."do-urlencode" args."fast-http" args."fast-io" args."flexi-streams" args."http-body" args."hunchentoot" args."ironclad" args."jonathan" args."lack" args."lack-component" args."lack-middleware-backtrace" args."lack-util" args."let-plus" args."local-time" args."map-set" args."marshal" args."md5" args."myway" args."named-readtables" args."proc-parse" args."prove" args."quri" args."rfc2388" args."rove" args."smart-buffer" args."split-sequence" args."static-vectors" args."trivial-backtrace" args."trivial-features" args."trivial-garbage" args."trivial-gray-streams" args."trivial-mimes" args."trivial-types" args."usocket" args."xsubseq" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/caveman/2019-08-13/caveman-20190813-git.tgz''; - sha256 = ''017b3g3vm28awv8s68rwkwri7yq31a6lgdd7114ziis2a9fq9hyd''; + url = ''http://beta.quicklisp.org/archive/caveman/2020-03-25/caveman-20200325-git.tgz''; + sha256 = ''0s134lamlyll4ad0380rj0hkiy9gakly7cb6sjr1yg2yd6ydz1py''; }; packageName = "caveman"; @@ -18,9 +18,9 @@ rec { overrides = x: x; } /* (SYSTEM caveman DESCRIPTION Web Application Framework for Common Lisp SHA256 - 017b3g3vm28awv8s68rwkwri7yq31a6lgdd7114ziis2a9fq9hyd URL - http://beta.quicklisp.org/archive/caveman/2019-08-13/caveman-20190813-git.tgz - MD5 09d7223fd528757eaf1285dd99105ed6 NAME caveman FILENAME caveman DEPS + 0s134lamlyll4ad0380rj0hkiy9gakly7cb6sjr1yg2yd6ydz1py URL + http://beta.quicklisp.org/archive/caveman/2020-03-25/caveman-20200325-git.tgz + MD5 32a7cbce26c77f885a497117c8e94a13 NAME caveman FILENAME caveman DEPS ((NAME alexandria FILENAME alexandria) (NAME anaphora FILENAME anaphora) (NAME babel FILENAME babel) (NAME bordeaux-threads FILENAME bordeaux-threads) @@ -31,9 +31,9 @@ rec { (NAME cl+ssl FILENAME cl_plus_ssl) (NAME cl-annot FILENAME cl-annot) (NAME cl-ansi-text FILENAME cl-ansi-text) (NAME cl-base64 FILENAME cl-base64) (NAME cl-colors FILENAME cl-colors) - (NAME cl-cookie FILENAME cl-cookie) (NAME cl-emb FILENAME cl-emb) - (NAME cl-fad FILENAME cl-fad) (NAME cl-ppcre FILENAME cl-ppcre) - (NAME cl-project FILENAME cl-project) + (NAME cl-colors2 FILENAME cl-colors2) (NAME cl-cookie FILENAME cl-cookie) + (NAME cl-emb FILENAME cl-emb) (NAME cl-fad FILENAME cl-fad) + (NAME cl-ppcre FILENAME cl-ppcre) (NAME cl-project FILENAME cl-project) (NAME cl-reexport FILENAME cl-reexport) (NAME cl-syntax FILENAME cl-syntax) (NAME cl-syntax-annot FILENAME cl-syntax-annot) @@ -56,10 +56,9 @@ rec { (NAME marshal FILENAME marshal) (NAME md5 FILENAME md5) (NAME myway FILENAME myway) (NAME named-readtables FILENAME named-readtables) - (NAME nibbles FILENAME nibbles) (NAME proc-parse FILENAME proc-parse) - (NAME prove FILENAME prove) (NAME quri FILENAME quri) - (NAME rfc2388 FILENAME rfc2388) (NAME rove FILENAME rove) - (NAME smart-buffer FILENAME smart-buffer) + (NAME proc-parse FILENAME proc-parse) (NAME prove FILENAME prove) + (NAME quri FILENAME quri) (NAME rfc2388 FILENAME rfc2388) + (NAME rove FILENAME rove) (NAME smart-buffer FILENAME smart-buffer) (NAME split-sequence FILENAME split-sequence) (NAME static-vectors FILENAME static-vectors) (NAME trivial-backtrace FILENAME trivial-backtrace) @@ -72,16 +71,16 @@ rec { DEPENDENCIES (alexandria anaphora babel bordeaux-threads cffi cffi-grovel cffi-toolchain chipz chunga circular-streams cl+ssl cl-annot cl-ansi-text cl-base64 - cl-colors cl-cookie cl-emb cl-fad cl-ppcre cl-project cl-reexport - cl-syntax cl-syntax-annot cl-utilities clack clack-handler-hunchentoot - clack-socket clack-test clack-v1-compat dexador dissect do-urlencode - fast-http fast-io flexi-streams http-body hunchentoot ironclad jonathan - lack lack-component lack-middleware-backtrace lack-util let-plus - local-time map-set marshal md5 myway named-readtables nibbles proc-parse + cl-colors cl-colors2 cl-cookie cl-emb cl-fad cl-ppcre cl-project + cl-reexport cl-syntax cl-syntax-annot cl-utilities clack + clack-handler-hunchentoot clack-socket clack-test clack-v1-compat dexador + dissect do-urlencode fast-http fast-io flexi-streams http-body hunchentoot + ironclad jonathan lack lack-component lack-middleware-backtrace lack-util + let-plus local-time map-set marshal md5 myway named-readtables proc-parse prove quri rfc2388 rove smart-buffer split-sequence static-vectors trivial-backtrace trivial-features trivial-garbage trivial-gray-streams trivial-mimes trivial-types usocket xsubseq) - VERSION 20190813-git SIBLINGS + VERSION 20200325-git SIBLINGS (caveman-middleware-dbimanager caveman-test caveman2-db caveman2-test caveman2) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cffi-grovel.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cffi-grovel.nix index a7d22ac129b..e4d6546e901 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cffi-grovel.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cffi-grovel.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''cffi-grovel''; - version = ''cffi_0.20.1''; + version = ''cffi_0.23.0''; description = ''The CFFI Groveller''; deps = [ args."alexandria" args."babel" args."cffi" args."cffi-toolchain" args."trivial-features" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cffi/2019-07-10/cffi_0.20.1.tgz''; - sha256 = ''0ppcwc61ww1igmkwpvzpr9hzsl8wpf8acxlamq5r0604iz07qhka''; + url = ''http://beta.quicklisp.org/archive/cffi/2020-07-15/cffi_0.23.0.tgz''; + sha256 = ''1szpbg5m5fjq7bpkblflpnwmgz3ncsvp1y43g3jzwlk7yfxrwxck''; }; packageName = "cffi-grovel"; @@ -18,13 +18,13 @@ rec { overrides = x: x; } /* (SYSTEM cffi-grovel DESCRIPTION The CFFI Groveller SHA256 - 0ppcwc61ww1igmkwpvzpr9hzsl8wpf8acxlamq5r0604iz07qhka URL - http://beta.quicklisp.org/archive/cffi/2019-07-10/cffi_0.20.1.tgz MD5 - b8a8337465a7b4c1be05270b777ce14f NAME cffi-grovel FILENAME cffi-grovel DEPS + 1szpbg5m5fjq7bpkblflpnwmgz3ncsvp1y43g3jzwlk7yfxrwxck URL + http://beta.quicklisp.org/archive/cffi/2020-07-15/cffi_0.23.0.tgz MD5 + a43e3c440fc4f20494e6d2347887c963 NAME cffi-grovel FILENAME cffi-grovel DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME cffi FILENAME cffi) (NAME cffi-toolchain FILENAME cffi-toolchain) (NAME trivial-features FILENAME trivial-features)) DEPENDENCIES (alexandria babel cffi cffi-toolchain trivial-features) - VERSION cffi_0.20.1 SIBLINGS + VERSION cffi_0.23.0 SIBLINGS (cffi-examples cffi-libffi cffi-tests cffi-toolchain cffi-uffi-compat cffi) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cffi-toolchain.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cffi-toolchain.nix index 3d246380607..ad5ecb7acc8 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cffi-toolchain.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cffi-toolchain.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''cffi-toolchain''; - version = ''cffi_0.20.1''; + version = ''cffi_0.23.0''; description = ''The CFFI toolchain''; deps = [ args."alexandria" args."babel" args."cffi" args."trivial-features" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cffi/2019-07-10/cffi_0.20.1.tgz''; - sha256 = ''0ppcwc61ww1igmkwpvzpr9hzsl8wpf8acxlamq5r0604iz07qhka''; + url = ''http://beta.quicklisp.org/archive/cffi/2020-07-15/cffi_0.23.0.tgz''; + sha256 = ''1szpbg5m5fjq7bpkblflpnwmgz3ncsvp1y43g3jzwlk7yfxrwxck''; }; packageName = "cffi-toolchain"; @@ -18,14 +18,14 @@ rec { overrides = x: x; } /* (SYSTEM cffi-toolchain DESCRIPTION The CFFI toolchain SHA256 - 0ppcwc61ww1igmkwpvzpr9hzsl8wpf8acxlamq5r0604iz07qhka URL - http://beta.quicklisp.org/archive/cffi/2019-07-10/cffi_0.20.1.tgz MD5 - b8a8337465a7b4c1be05270b777ce14f NAME cffi-toolchain FILENAME + 1szpbg5m5fjq7bpkblflpnwmgz3ncsvp1y43g3jzwlk7yfxrwxck URL + http://beta.quicklisp.org/archive/cffi/2020-07-15/cffi_0.23.0.tgz MD5 + a43e3c440fc4f20494e6d2347887c963 NAME cffi-toolchain FILENAME cffi-toolchain DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME cffi FILENAME cffi) (NAME trivial-features FILENAME trivial-features)) - DEPENDENCIES (alexandria babel cffi trivial-features) VERSION cffi_0.20.1 + DEPENDENCIES (alexandria babel cffi trivial-features) VERSION cffi_0.23.0 SIBLINGS (cffi-examples cffi-grovel cffi-libffi cffi-tests cffi-uffi-compat cffi) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cffi.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cffi.nix index b83b1461197..e234301f1fe 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cffi.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cffi.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''cffi''; - version = ''cffi_0.20.1''; + version = ''cffi_0.23.0''; parasites = [ "cffi/c2ffi" "cffi/c2ffi-generator" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."alexandria" args."babel" args."cl-json" args."cl-ppcre" args."trivial-features" args."uiop" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cffi/2019-07-10/cffi_0.20.1.tgz''; - sha256 = ''0ppcwc61ww1igmkwpvzpr9hzsl8wpf8acxlamq5r0604iz07qhka''; + url = ''http://beta.quicklisp.org/archive/cffi/2020-07-15/cffi_0.23.0.tgz''; + sha256 = ''1szpbg5m5fjq7bpkblflpnwmgz3ncsvp1y43g3jzwlk7yfxrwxck''; }; packageName = "cffi"; @@ -20,15 +20,15 @@ rec { overrides = x: x; } /* (SYSTEM cffi DESCRIPTION The Common Foreign Function Interface SHA256 - 0ppcwc61ww1igmkwpvzpr9hzsl8wpf8acxlamq5r0604iz07qhka URL - http://beta.quicklisp.org/archive/cffi/2019-07-10/cffi_0.20.1.tgz MD5 - b8a8337465a7b4c1be05270b777ce14f NAME cffi FILENAME cffi DEPS + 1szpbg5m5fjq7bpkblflpnwmgz3ncsvp1y43g3jzwlk7yfxrwxck URL + http://beta.quicklisp.org/archive/cffi/2020-07-15/cffi_0.23.0.tgz MD5 + a43e3c440fc4f20494e6d2347887c963 NAME cffi FILENAME cffi DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME cl-json FILENAME cl-json) (NAME cl-ppcre FILENAME cl-ppcre) (NAME trivial-features FILENAME trivial-features) (NAME uiop FILENAME uiop)) DEPENDENCIES (alexandria babel cl-json cl-ppcre trivial-features uiop) - VERSION cffi_0.20.1 SIBLINGS + VERSION cffi_0.23.0 SIBLINGS (cffi-examples cffi-grovel cffi-libffi cffi-tests cffi-toolchain cffi-uffi-compat) PARASITES (cffi/c2ffi cffi/c2ffi-generator)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/chanl.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/chanl.nix new file mode 100644 index 00000000000..b0dea4fbd22 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/chanl.nix @@ -0,0 +1,31 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''chanl''; + version = ''20201016-git''; + + parasites = [ "chanl/examples" "chanl/tests" ]; + + description = ''Communicating Sequential Process support for Common Lisp''; + + deps = [ args."alexandria" args."bordeaux-threads" args."fiveam" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/chanl/2020-10-16/chanl-20201016-git.tgz''; + sha256 = ''13kmk6q20kkwy8z3fy0sv57076xf5nls3qx31yp47vaxhn9p11a1''; + }; + + packageName = "chanl"; + + asdFilesToKeep = ["chanl.asd"]; + overrides = x: x; +} +/* (SYSTEM chanl DESCRIPTION + Communicating Sequential Process support for Common Lisp SHA256 + 13kmk6q20kkwy8z3fy0sv57076xf5nls3qx31yp47vaxhn9p11a1 URL + http://beta.quicklisp.org/archive/chanl/2020-10-16/chanl-20201016-git.tgz + MD5 7870137f4c905f64290634ae3d0aa3fd NAME chanl FILENAME chanl DEPS + ((NAME alexandria FILENAME alexandria) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME fiveam FILENAME fiveam)) + DEPENDENCIES (alexandria bordeaux-threads fiveam) VERSION 20201016-git + SIBLINGS NIL PARASITES (chanl/examples chanl/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/chunga.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/chunga.nix index 41520bf41fb..644daa8af92 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/chunga.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/chunga.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''chunga''; - version = ''20180131-git''; + version = ''20200427-git''; description = ''System lacks description''; deps = [ args."trivial-gray-streams" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/chunga/2018-01-31/chunga-20180131-git.tgz''; - sha256 = ''0crlv6n6al7j9b40dpfjd13870ih5hzwra29xxfg3zg2zy2kdnrq''; + url = ''http://beta.quicklisp.org/archive/chunga/2020-04-27/chunga-20200427-git.tgz''; + sha256 = ''0p6dlnan6raincd682brcjbklyvmkfkhz0yzp2bkfw67s9615bkk''; }; packageName = "chunga"; @@ -18,8 +18,8 @@ rec { overrides = x: x; } /* (SYSTEM chunga DESCRIPTION System lacks description SHA256 - 0crlv6n6al7j9b40dpfjd13870ih5hzwra29xxfg3zg2zy2kdnrq URL - http://beta.quicklisp.org/archive/chunga/2018-01-31/chunga-20180131-git.tgz - MD5 044b684535b11b1eee1cf939bec6e14a NAME chunga FILENAME chunga DEPS + 0p6dlnan6raincd682brcjbklyvmkfkhz0yzp2bkfw67s9615bkk URL + http://beta.quicklisp.org/archive/chunga/2020-04-27/chunga-20200427-git.tgz + MD5 ec31aa63a1b594a197ad45e5e65c4cc4 NAME chunga FILENAME chunga DEPS ((NAME trivial-gray-streams FILENAME trivial-gray-streams)) DEPENDENCIES - (trivial-gray-streams) VERSION 20180131-git SIBLINGS NIL PARASITES NIL) */ + (trivial-gray-streams) VERSION 20200427-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-ansi-text.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-ansi-text.nix index 9b053c920e3..33f696f3616 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-ansi-text.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-ansi-text.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-ansi-text''; - version = ''20150804-git''; + version = ''20200218-git''; description = ''ANSI control string characters, focused on color''; - deps = [ args."alexandria" args."anaphora" args."cl-colors" args."let-plus" ]; + deps = [ args."alexandria" args."cl-colors2" args."cl-ppcre" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-ansi-text/2015-08-04/cl-ansi-text-20150804-git.tgz''; - sha256 = ''112w7qg8yp28qyc2b5c7km457krr3xksxyps1icmgdpqf9ccpn2i''; + url = ''http://beta.quicklisp.org/archive/cl-ansi-text/2020-02-18/cl-ansi-text-20200218-git.tgz''; + sha256 = ''1yn657rka3pcg3p5g9czbpk0f0rv81dbq1gknid1b24zg7krks5r''; }; packageName = "cl-ansi-text"; @@ -19,11 +19,11 @@ rec { } /* (SYSTEM cl-ansi-text DESCRIPTION ANSI control string characters, focused on color SHA256 - 112w7qg8yp28qyc2b5c7km457krr3xksxyps1icmgdpqf9ccpn2i URL - http://beta.quicklisp.org/archive/cl-ansi-text/2015-08-04/cl-ansi-text-20150804-git.tgz - MD5 70aa38b40377a5e89a7f22bb68b3f796 NAME cl-ansi-text FILENAME + 1yn657rka3pcg3p5g9czbpk0f0rv81dbq1gknid1b24zg7krks5r URL + http://beta.quicklisp.org/archive/cl-ansi-text/2020-02-18/cl-ansi-text-20200218-git.tgz + MD5 2fccf2a06d73237ab421d9e62a2c6bd2 NAME cl-ansi-text FILENAME cl-ansi-text DEPS - ((NAME alexandria FILENAME alexandria) (NAME anaphora FILENAME anaphora) - (NAME cl-colors FILENAME cl-colors) (NAME let-plus FILENAME let-plus)) - DEPENDENCIES (alexandria anaphora cl-colors let-plus) VERSION 20150804-git - SIBLINGS (cl-ansi-text-test) PARASITES NIL) */ + ((NAME alexandria FILENAME alexandria) + (NAME cl-colors2 FILENAME cl-colors2) (NAME cl-ppcre FILENAME cl-ppcre)) + DEPENDENCIES (alexandria cl-colors2 cl-ppcre) VERSION 20200218-git SIBLINGS + (cl-ansi-text.test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-async-repl.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-async-repl.nix index 401ad78aa09..83d32317b5b 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-async-repl.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-async-repl.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-async-repl''; - version = ''cl-async-20191130-git''; + version = ''cl-async-20200610-git''; description = ''REPL integration for CL-ASYNC.''; deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."cl-async" args."cl-async-base" args."cl-async-util" args."cl-libuv" args."cl-ppcre" args."fast-io" args."static-vectors" args."trivial-features" args."trivial-gray-streams" args."vom" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-async/2019-11-30/cl-async-20191130-git.tgz''; - sha256 = ''01kadvflif18f4i2l8iwx9jpg9543hrxagv4ad4q1k9500078vv2''; + url = ''http://beta.quicklisp.org/archive/cl-async/2020-06-10/cl-async-20200610-git.tgz''; + sha256 = ''10fyd36i5zlnxh69y1l7098b3h94l4hqwl0zhv0nshcs4sa7l37h''; }; packageName = "cl-async-repl"; @@ -18,9 +18,9 @@ rec { overrides = x: x; } /* (SYSTEM cl-async-repl DESCRIPTION REPL integration for CL-ASYNC. SHA256 - 01kadvflif18f4i2l8iwx9jpg9543hrxagv4ad4q1k9500078vv2 URL - http://beta.quicklisp.org/archive/cl-async/2019-11-30/cl-async-20191130-git.tgz - MD5 3850bc827b4c41b6047b962e3892bcb2 NAME cl-async-repl FILENAME + 10fyd36i5zlnxh69y1l7098b3h94l4hqwl0zhv0nshcs4sa7l37h URL + http://beta.quicklisp.org/archive/cl-async/2020-06-10/cl-async-20200610-git.tgz + MD5 4bf419e7ed94249648eb9d0013e7d360 NAME cl-async-repl FILENAME cl-async-repl DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME bordeaux-threads FILENAME bordeaux-threads) @@ -39,5 +39,5 @@ rec { (alexandria babel bordeaux-threads cffi cffi-grovel cffi-toolchain cl-async cl-async-base cl-async-util cl-libuv cl-ppcre fast-io static-vectors trivial-features trivial-gray-streams vom) - VERSION cl-async-20191130-git SIBLINGS + VERSION cl-async-20200610-git SIBLINGS (cl-async-ssl cl-async-test cl-async) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-async-ssl.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-async-ssl.nix index 73bbce5709e..606a4ffc213 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-async-ssl.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-async-ssl.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-async-ssl''; - version = ''cl-async-20191130-git''; + version = ''cl-async-20200610-git''; description = ''SSL Wrapper around cl-async socket implementation.''; deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."cl-async" args."cl-async-base" args."cl-async-util" args."cl-libuv" args."cl-ppcre" args."fast-io" args."static-vectors" args."trivial-features" args."trivial-gray-streams" args."vom" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-async/2019-11-30/cl-async-20191130-git.tgz''; - sha256 = ''01kadvflif18f4i2l8iwx9jpg9543hrxagv4ad4q1k9500078vv2''; + url = ''http://beta.quicklisp.org/archive/cl-async/2020-06-10/cl-async-20200610-git.tgz''; + sha256 = ''10fyd36i5zlnxh69y1l7098b3h94l4hqwl0zhv0nshcs4sa7l37h''; }; packageName = "cl-async-ssl"; @@ -19,9 +19,9 @@ rec { } /* (SYSTEM cl-async-ssl DESCRIPTION SSL Wrapper around cl-async socket implementation. SHA256 - 01kadvflif18f4i2l8iwx9jpg9543hrxagv4ad4q1k9500078vv2 URL - http://beta.quicklisp.org/archive/cl-async/2019-11-30/cl-async-20191130-git.tgz - MD5 3850bc827b4c41b6047b962e3892bcb2 NAME cl-async-ssl FILENAME + 10fyd36i5zlnxh69y1l7098b3h94l4hqwl0zhv0nshcs4sa7l37h URL + http://beta.quicklisp.org/archive/cl-async/2020-06-10/cl-async-20200610-git.tgz + MD5 4bf419e7ed94249648eb9d0013e7d360 NAME cl-async-ssl FILENAME cl-async-ssl DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME bordeaux-threads FILENAME bordeaux-threads) @@ -40,5 +40,5 @@ rec { (alexandria babel bordeaux-threads cffi cffi-grovel cffi-toolchain cl-async cl-async-base cl-async-util cl-libuv cl-ppcre fast-io static-vectors trivial-features trivial-gray-streams vom) - VERSION cl-async-20191130-git SIBLINGS + VERSION cl-async-20200610-git SIBLINGS (cl-async-repl cl-async-test cl-async) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-async.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-async.nix index 1346431f6fb..f2ad6b509d0 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-async.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-async.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-async''; - version = ''20191130-git''; + version = ''20200610-git''; parasites = [ "cl-async-base" "cl-async-util" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."cl-libuv" args."cl-ppcre" args."fast-io" args."static-vectors" args."trivial-features" args."trivial-gray-streams" args."uiop" args."vom" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-async/2019-11-30/cl-async-20191130-git.tgz''; - sha256 = ''01kadvflif18f4i2l8iwx9jpg9543hrxagv4ad4q1k9500078vv2''; + url = ''http://beta.quicklisp.org/archive/cl-async/2020-06-10/cl-async-20200610-git.tgz''; + sha256 = ''10fyd36i5zlnxh69y1l7098b3h94l4hqwl0zhv0nshcs4sa7l37h''; }; packageName = "cl-async"; @@ -20,9 +20,9 @@ rec { overrides = x: x; } /* (SYSTEM cl-async DESCRIPTION Asynchronous operations for Common Lisp. SHA256 - 01kadvflif18f4i2l8iwx9jpg9543hrxagv4ad4q1k9500078vv2 URL - http://beta.quicklisp.org/archive/cl-async/2019-11-30/cl-async-20191130-git.tgz - MD5 3850bc827b4c41b6047b962e3892bcb2 NAME cl-async FILENAME cl-async DEPS + 10fyd36i5zlnxh69y1l7098b3h94l4hqwl0zhv0nshcs4sa7l37h URL + http://beta.quicklisp.org/archive/cl-async/2020-06-10/cl-async-20200610-git.tgz + MD5 4bf419e7ed94249648eb9d0013e7d360 NAME cl-async FILENAME cl-async DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME bordeaux-threads FILENAME bordeaux-threads) (NAME cffi FILENAME cffi) (NAME cffi-grovel FILENAME cffi-grovel) @@ -37,5 +37,5 @@ rec { (alexandria babel bordeaux-threads cffi cffi-grovel cffi-toolchain cl-libuv cl-ppcre fast-io static-vectors trivial-features trivial-gray-streams uiop vom) - VERSION 20191130-git SIBLINGS (cl-async-repl cl-async-ssl cl-async-test) + VERSION 20200610-git SIBLINGS (cl-async-repl cl-async-ssl cl-async-test) PARASITES (cl-async-base cl-async-util)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-base64.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-base64.nix index a4a9a9261fd..15843d1c2fe 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-base64.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-base64.nix @@ -1,17 +1,17 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-base64''; - version = ''20150923-git''; + version = ''20201016-git''; - parasites = [ "cl-base64-tests" ]; + parasites = [ "cl-base64/test" ]; description = ''Base64 encoding and decoding with URI support.''; deps = [ args."kmrcl" args."ptester" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-base64/2015-09-23/cl-base64-20150923-git.tgz''; - sha256 = ''0haip5x0091r9xa8gdzr21s0rk432998nbxxfys35lhnyc1vgyhp''; + url = ''http://beta.quicklisp.org/archive/cl-base64/2020-10-16/cl-base64-20201016-git.tgz''; + sha256 = ''1wd2sgvfrivrbzlhs1vgj762jqz7sk171ssli6gl1kfwbnphzx9z''; }; packageName = "cl-base64"; @@ -20,9 +20,9 @@ rec { overrides = x: x; } /* (SYSTEM cl-base64 DESCRIPTION Base64 encoding and decoding with URI support. - SHA256 0haip5x0091r9xa8gdzr21s0rk432998nbxxfys35lhnyc1vgyhp URL - http://beta.quicklisp.org/archive/cl-base64/2015-09-23/cl-base64-20150923-git.tgz - MD5 560d0601eaa86901611f1484257b9a57 NAME cl-base64 FILENAME cl-base64 DEPS + SHA256 1wd2sgvfrivrbzlhs1vgj762jqz7sk171ssli6gl1kfwbnphzx9z URL + http://beta.quicklisp.org/archive/cl-base64/2020-10-16/cl-base64-20201016-git.tgz + MD5 f556f7c61f785c84abdc1beb63c906ae NAME cl-base64 FILENAME cl-base64 DEPS ((NAME kmrcl FILENAME kmrcl) (NAME ptester FILENAME ptester)) DEPENDENCIES - (kmrcl ptester) VERSION 20150923-git SIBLINGS NIL PARASITES - (cl-base64-tests)) */ + (kmrcl ptester) VERSION 20201016-git SIBLINGS NIL PARASITES + (cl-base64/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-cairo.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-cairo.nix new file mode 100644 index 00000000000..d240e3e842d --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-cairo.nix @@ -0,0 +1,39 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''cl-cffi-gtk-cairo''; + version = ''cl-cffi-gtk-20201016-git''; + + description = ''A Lisp binding to Cairo''; + + deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cl-cffi-gtk-glib" args."iterate" args."trivial-features" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz''; + sha256 = ''1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55''; + }; + + packageName = "cl-cffi-gtk-cairo"; + + asdFilesToKeep = ["cl-cffi-gtk-cairo.asd"]; + overrides = x: x; +} +/* (SYSTEM cl-cffi-gtk-cairo DESCRIPTION A Lisp binding to Cairo SHA256 + 1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55 URL + http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz + MD5 7eef130d69af506c68b2d98271215fbd NAME cl-cffi-gtk-cairo FILENAME + cl-cffi-gtk-cairo DEPS + ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME cffi FILENAME cffi) + (NAME cl-cffi-gtk-glib FILENAME cl-cffi-gtk-glib) + (NAME iterate FILENAME iterate) + (NAME trivial-features FILENAME trivial-features)) + DEPENDENCIES + (alexandria babel bordeaux-threads cffi cl-cffi-gtk-glib iterate + trivial-features) + VERSION cl-cffi-gtk-20201016-git SIBLINGS + (cl-cffi-gtk-demo-cairo cl-cffi-gtk-demo-glib cl-cffi-gtk-demo-gobject + cl-cffi-gtk-example-gtk cl-cffi-gtk-opengl-demo cl-cffi-gtk-gdk-pixbuf + cl-cffi-gtk-gdk cl-cffi-gtk-gio cl-cffi-gtk-glib cl-cffi-gtk-gobject + cl-cffi-gtk cl-cffi-gtk-pango) + PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-gdk-pixbuf.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-gdk-pixbuf.nix new file mode 100644 index 00000000000..0c2d3abc282 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-gdk-pixbuf.nix @@ -0,0 +1,41 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''cl-cffi-gtk-gdk-pixbuf''; + version = ''cl-cffi-gtk-20201016-git''; + + description = ''A Lisp binding to GDK Pixbuf 2''; + + deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cl-cffi-gtk-glib" args."cl-cffi-gtk-gobject" args."closer-mop" args."iterate" args."trivial-features" args."trivial-garbage" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz''; + sha256 = ''1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55''; + }; + + packageName = "cl-cffi-gtk-gdk-pixbuf"; + + asdFilesToKeep = ["cl-cffi-gtk-gdk-pixbuf.asd"]; + overrides = x: x; +} +/* (SYSTEM cl-cffi-gtk-gdk-pixbuf DESCRIPTION A Lisp binding to GDK Pixbuf 2 + SHA256 1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55 URL + http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz + MD5 7eef130d69af506c68b2d98271215fbd NAME cl-cffi-gtk-gdk-pixbuf FILENAME + cl-cffi-gtk-gdk-pixbuf DEPS + ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME cffi FILENAME cffi) + (NAME cl-cffi-gtk-glib FILENAME cl-cffi-gtk-glib) + (NAME cl-cffi-gtk-gobject FILENAME cl-cffi-gtk-gobject) + (NAME closer-mop FILENAME closer-mop) (NAME iterate FILENAME iterate) + (NAME trivial-features FILENAME trivial-features) + (NAME trivial-garbage FILENAME trivial-garbage)) + DEPENDENCIES + (alexandria babel bordeaux-threads cffi cl-cffi-gtk-glib + cl-cffi-gtk-gobject closer-mop iterate trivial-features trivial-garbage) + VERSION cl-cffi-gtk-20201016-git SIBLINGS + (cl-cffi-gtk-cairo cl-cffi-gtk-demo-cairo cl-cffi-gtk-demo-glib + cl-cffi-gtk-demo-gobject cl-cffi-gtk-example-gtk cl-cffi-gtk-opengl-demo + cl-cffi-gtk-gdk cl-cffi-gtk-gio cl-cffi-gtk-glib cl-cffi-gtk-gobject + cl-cffi-gtk cl-cffi-gtk-pango) + PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-gdk.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-gdk.nix new file mode 100644 index 00000000000..748cc9a0d6c --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-gdk.nix @@ -0,0 +1,47 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''cl-cffi-gtk-gdk''; + version = ''cl-cffi-gtk-20201016-git''; + + description = ''A Lisp binding to GDK 3''; + + deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cl-cffi-gtk-cairo" args."cl-cffi-gtk-gdk-pixbuf" args."cl-cffi-gtk-gio" args."cl-cffi-gtk-glib" args."cl-cffi-gtk-gobject" args."cl-cffi-gtk-pango" args."closer-mop" args."iterate" args."trivial-features" args."trivial-garbage" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz''; + sha256 = ''1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55''; + }; + + packageName = "cl-cffi-gtk-gdk"; + + asdFilesToKeep = ["cl-cffi-gtk-gdk.asd"]; + overrides = x: x; +} +/* (SYSTEM cl-cffi-gtk-gdk DESCRIPTION A Lisp binding to GDK 3 SHA256 + 1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55 URL + http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz + MD5 7eef130d69af506c68b2d98271215fbd NAME cl-cffi-gtk-gdk FILENAME + cl-cffi-gtk-gdk DEPS + ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME cffi FILENAME cffi) + (NAME cl-cffi-gtk-cairo FILENAME cl-cffi-gtk-cairo) + (NAME cl-cffi-gtk-gdk-pixbuf FILENAME cl-cffi-gtk-gdk-pixbuf) + (NAME cl-cffi-gtk-gio FILENAME cl-cffi-gtk-gio) + (NAME cl-cffi-gtk-glib FILENAME cl-cffi-gtk-glib) + (NAME cl-cffi-gtk-gobject FILENAME cl-cffi-gtk-gobject) + (NAME cl-cffi-gtk-pango FILENAME cl-cffi-gtk-pango) + (NAME closer-mop FILENAME closer-mop) (NAME iterate FILENAME iterate) + (NAME trivial-features FILENAME trivial-features) + (NAME trivial-garbage FILENAME trivial-garbage)) + DEPENDENCIES + (alexandria babel bordeaux-threads cffi cl-cffi-gtk-cairo + cl-cffi-gtk-gdk-pixbuf cl-cffi-gtk-gio cl-cffi-gtk-glib + cl-cffi-gtk-gobject cl-cffi-gtk-pango closer-mop iterate trivial-features + trivial-garbage) + VERSION cl-cffi-gtk-20201016-git SIBLINGS + (cl-cffi-gtk-cairo cl-cffi-gtk-demo-cairo cl-cffi-gtk-demo-glib + cl-cffi-gtk-demo-gobject cl-cffi-gtk-example-gtk cl-cffi-gtk-opengl-demo + cl-cffi-gtk-gdk-pixbuf cl-cffi-gtk-gio cl-cffi-gtk-glib + cl-cffi-gtk-gobject cl-cffi-gtk cl-cffi-gtk-pango) + PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-gio.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-gio.nix new file mode 100644 index 00000000000..af53a594587 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-gio.nix @@ -0,0 +1,41 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''cl-cffi-gtk-gio''; + version = ''cl-cffi-gtk-20201016-git''; + + description = ''A Lisp binding to GIO 2''; + + deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cl-cffi-gtk-glib" args."cl-cffi-gtk-gobject" args."closer-mop" args."iterate" args."trivial-features" args."trivial-garbage" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz''; + sha256 = ''1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55''; + }; + + packageName = "cl-cffi-gtk-gio"; + + asdFilesToKeep = ["cl-cffi-gtk-gio.asd"]; + overrides = x: x; +} +/* (SYSTEM cl-cffi-gtk-gio DESCRIPTION A Lisp binding to GIO 2 SHA256 + 1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55 URL + http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz + MD5 7eef130d69af506c68b2d98271215fbd NAME cl-cffi-gtk-gio FILENAME + cl-cffi-gtk-gio DEPS + ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME cffi FILENAME cffi) + (NAME cl-cffi-gtk-glib FILENAME cl-cffi-gtk-glib) + (NAME cl-cffi-gtk-gobject FILENAME cl-cffi-gtk-gobject) + (NAME closer-mop FILENAME closer-mop) (NAME iterate FILENAME iterate) + (NAME trivial-features FILENAME trivial-features) + (NAME trivial-garbage FILENAME trivial-garbage)) + DEPENDENCIES + (alexandria babel bordeaux-threads cffi cl-cffi-gtk-glib + cl-cffi-gtk-gobject closer-mop iterate trivial-features trivial-garbage) + VERSION cl-cffi-gtk-20201016-git SIBLINGS + (cl-cffi-gtk-cairo cl-cffi-gtk-demo-cairo cl-cffi-gtk-demo-glib + cl-cffi-gtk-demo-gobject cl-cffi-gtk-example-gtk cl-cffi-gtk-opengl-demo + cl-cffi-gtk-gdk-pixbuf cl-cffi-gtk-gdk cl-cffi-gtk-glib + cl-cffi-gtk-gobject cl-cffi-gtk cl-cffi-gtk-pango) + PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-glib.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-glib.nix new file mode 100644 index 00000000000..4ad75bf507a --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-glib.nix @@ -0,0 +1,36 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''cl-cffi-gtk-glib''; + version = ''cl-cffi-gtk-20201016-git''; + + description = ''A Lisp binding to GLib 2''; + + deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."iterate" args."trivial-features" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz''; + sha256 = ''1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55''; + }; + + packageName = "cl-cffi-gtk-glib"; + + asdFilesToKeep = ["cl-cffi-gtk-glib.asd"]; + overrides = x: x; +} +/* (SYSTEM cl-cffi-gtk-glib DESCRIPTION A Lisp binding to GLib 2 SHA256 + 1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55 URL + http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz + MD5 7eef130d69af506c68b2d98271215fbd NAME cl-cffi-gtk-glib FILENAME + cl-cffi-gtk-glib DEPS + ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME cffi FILENAME cffi) (NAME iterate FILENAME iterate) + (NAME trivial-features FILENAME trivial-features)) + DEPENDENCIES + (alexandria babel bordeaux-threads cffi iterate trivial-features) VERSION + cl-cffi-gtk-20201016-git SIBLINGS + (cl-cffi-gtk-cairo cl-cffi-gtk-demo-cairo cl-cffi-gtk-demo-glib + cl-cffi-gtk-demo-gobject cl-cffi-gtk-example-gtk cl-cffi-gtk-opengl-demo + cl-cffi-gtk-gdk-pixbuf cl-cffi-gtk-gdk cl-cffi-gtk-gio cl-cffi-gtk-gobject + cl-cffi-gtk cl-cffi-gtk-pango) + PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-gobject.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-gobject.nix new file mode 100644 index 00000000000..c2e2deef003 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-gobject.nix @@ -0,0 +1,40 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''cl-cffi-gtk-gobject''; + version = ''cl-cffi-gtk-20201016-git''; + + description = ''A Lisp binding GObject 2''; + + deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cl-cffi-gtk-glib" args."closer-mop" args."iterate" args."trivial-features" args."trivial-garbage" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz''; + sha256 = ''1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55''; + }; + + packageName = "cl-cffi-gtk-gobject"; + + asdFilesToKeep = ["cl-cffi-gtk-gobject.asd"]; + overrides = x: x; +} +/* (SYSTEM cl-cffi-gtk-gobject DESCRIPTION A Lisp binding GObject 2 SHA256 + 1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55 URL + http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz + MD5 7eef130d69af506c68b2d98271215fbd NAME cl-cffi-gtk-gobject FILENAME + cl-cffi-gtk-gobject DEPS + ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME cffi FILENAME cffi) + (NAME cl-cffi-gtk-glib FILENAME cl-cffi-gtk-glib) + (NAME closer-mop FILENAME closer-mop) (NAME iterate FILENAME iterate) + (NAME trivial-features FILENAME trivial-features) + (NAME trivial-garbage FILENAME trivial-garbage)) + DEPENDENCIES + (alexandria babel bordeaux-threads cffi cl-cffi-gtk-glib closer-mop iterate + trivial-features trivial-garbage) + VERSION cl-cffi-gtk-20201016-git SIBLINGS + (cl-cffi-gtk-cairo cl-cffi-gtk-demo-cairo cl-cffi-gtk-demo-glib + cl-cffi-gtk-demo-gobject cl-cffi-gtk-example-gtk cl-cffi-gtk-opengl-demo + cl-cffi-gtk-gdk-pixbuf cl-cffi-gtk-gdk cl-cffi-gtk-gio cl-cffi-gtk-glib + cl-cffi-gtk cl-cffi-gtk-pango) + PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-pango.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-pango.nix new file mode 100644 index 00000000000..896528cf166 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk-pango.nix @@ -0,0 +1,42 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''cl-cffi-gtk-pango''; + version = ''cl-cffi-gtk-20201016-git''; + + description = ''A Lisp binding to Pango''; + + deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cl-cffi-gtk-cairo" args."cl-cffi-gtk-glib" args."cl-cffi-gtk-gobject" args."closer-mop" args."iterate" args."trivial-features" args."trivial-garbage" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz''; + sha256 = ''1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55''; + }; + + packageName = "cl-cffi-gtk-pango"; + + asdFilesToKeep = ["cl-cffi-gtk-pango.asd"]; + overrides = x: x; +} +/* (SYSTEM cl-cffi-gtk-pango DESCRIPTION A Lisp binding to Pango SHA256 + 1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55 URL + http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz + MD5 7eef130d69af506c68b2d98271215fbd NAME cl-cffi-gtk-pango FILENAME + cl-cffi-gtk-pango DEPS + ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME cffi FILENAME cffi) + (NAME cl-cffi-gtk-cairo FILENAME cl-cffi-gtk-cairo) + (NAME cl-cffi-gtk-glib FILENAME cl-cffi-gtk-glib) + (NAME cl-cffi-gtk-gobject FILENAME cl-cffi-gtk-gobject) + (NAME closer-mop FILENAME closer-mop) (NAME iterate FILENAME iterate) + (NAME trivial-features FILENAME trivial-features) + (NAME trivial-garbage FILENAME trivial-garbage)) + DEPENDENCIES + (alexandria babel bordeaux-threads cffi cl-cffi-gtk-cairo cl-cffi-gtk-glib + cl-cffi-gtk-gobject closer-mop iterate trivial-features trivial-garbage) + VERSION cl-cffi-gtk-20201016-git SIBLINGS + (cl-cffi-gtk-cairo cl-cffi-gtk-demo-cairo cl-cffi-gtk-demo-glib + cl-cffi-gtk-demo-gobject cl-cffi-gtk-example-gtk cl-cffi-gtk-opengl-demo + cl-cffi-gtk-gdk-pixbuf cl-cffi-gtk-gdk cl-cffi-gtk-gio cl-cffi-gtk-glib + cl-cffi-gtk-gobject cl-cffi-gtk) + PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk.nix new file mode 100644 index 00000000000..7055aec5121 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cffi-gtk.nix @@ -0,0 +1,48 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''cl-cffi-gtk''; + version = ''20201016-git''; + + description = ''A Lisp binding to GTK 3''; + + deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cl-cffi-gtk-cairo" args."cl-cffi-gtk-gdk" args."cl-cffi-gtk-gdk-pixbuf" args."cl-cffi-gtk-gio" args."cl-cffi-gtk-glib" args."cl-cffi-gtk-gobject" args."cl-cffi-gtk-pango" args."closer-mop" args."iterate" args."trivial-features" args."trivial-garbage" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz''; + sha256 = ''1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55''; + }; + + packageName = "cl-cffi-gtk"; + + asdFilesToKeep = ["cl-cffi-gtk.asd"]; + overrides = x: x; +} +/* (SYSTEM cl-cffi-gtk DESCRIPTION A Lisp binding to GTK 3 SHA256 + 1m91597nwwrps32awvk57k3h4jjq603ja0kf395n2jxvckfz0a55 URL + http://beta.quicklisp.org/archive/cl-cffi-gtk/2020-10-16/cl-cffi-gtk-20201016-git.tgz + MD5 7eef130d69af506c68b2d98271215fbd NAME cl-cffi-gtk FILENAME cl-cffi-gtk + DEPS + ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME cffi FILENAME cffi) + (NAME cl-cffi-gtk-cairo FILENAME cl-cffi-gtk-cairo) + (NAME cl-cffi-gtk-gdk FILENAME cl-cffi-gtk-gdk) + (NAME cl-cffi-gtk-gdk-pixbuf FILENAME cl-cffi-gtk-gdk-pixbuf) + (NAME cl-cffi-gtk-gio FILENAME cl-cffi-gtk-gio) + (NAME cl-cffi-gtk-glib FILENAME cl-cffi-gtk-glib) + (NAME cl-cffi-gtk-gobject FILENAME cl-cffi-gtk-gobject) + (NAME cl-cffi-gtk-pango FILENAME cl-cffi-gtk-pango) + (NAME closer-mop FILENAME closer-mop) (NAME iterate FILENAME iterate) + (NAME trivial-features FILENAME trivial-features) + (NAME trivial-garbage FILENAME trivial-garbage)) + DEPENDENCIES + (alexandria babel bordeaux-threads cffi cl-cffi-gtk-cairo cl-cffi-gtk-gdk + cl-cffi-gtk-gdk-pixbuf cl-cffi-gtk-gio cl-cffi-gtk-glib + cl-cffi-gtk-gobject cl-cffi-gtk-pango closer-mop iterate trivial-features + trivial-garbage) + VERSION 20201016-git SIBLINGS + (cl-cffi-gtk-cairo cl-cffi-gtk-demo-cairo cl-cffi-gtk-demo-glib + cl-cffi-gtk-demo-gobject cl-cffi-gtk-example-gtk cl-cffi-gtk-opengl-demo + cl-cffi-gtk-gdk-pixbuf cl-cffi-gtk-gdk cl-cffi-gtk-gio cl-cffi-gtk-glib + cl-cffi-gtk-gobject cl-cffi-gtk-pango) + PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-colors2.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-colors2.nix new file mode 100644 index 00000000000..519f43ff324 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-colors2.nix @@ -0,0 +1,30 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''cl-colors2''; + version = ''20200218-git''; + + parasites = [ "cl-colors2/tests" ]; + + description = ''Simple color library for Common Lisp''; + + deps = [ args."alexandria" args."cl-ppcre" args."clunit2" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-colors2/2020-02-18/cl-colors2-20200218-git.tgz''; + sha256 = ''0rpf8j232qv254zhkvkz3ja20al1kswvcqhvvv0r2ag6dks56j29''; + }; + + packageName = "cl-colors2"; + + asdFilesToKeep = ["cl-colors2.asd"]; + overrides = x: x; +} +/* (SYSTEM cl-colors2 DESCRIPTION Simple color library for Common Lisp SHA256 + 0rpf8j232qv254zhkvkz3ja20al1kswvcqhvvv0r2ag6dks56j29 URL + http://beta.quicklisp.org/archive/cl-colors2/2020-02-18/cl-colors2-20200218-git.tgz + MD5 054283564f17af46a09e259ff509b656 NAME cl-colors2 FILENAME cl-colors2 + DEPS + ((NAME alexandria FILENAME alexandria) (NAME cl-ppcre FILENAME cl-ppcre) + (NAME clunit2 FILENAME clunit2)) + DEPENDENCIES (alexandria cl-ppcre clunit2) VERSION 20200218-git SIBLINGS + NIL PARASITES (cl-colors2/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-containers.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-containers.nix index 9b558402ce6..bd0483b4524 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-containers.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-containers.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: -{ +rec { baseName = ''cl-containers''; - version = ''20170403-git''; + version = ''20200427-git''; parasites = [ "cl-containers/with-moptilities" "cl-containers/with-utilities" ]; @@ -10,8 +10,8 @@ args @ { fetchurl, ... }: deps = [ args."asdf-system-connections" args."metatilities-base" args."moptilities" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-containers/2017-04-03/cl-containers-20170403-git.tgz''; - sha256 = ''0wlwbz5xv3468iszvmfxnj924mdwx0lyzmhsggiq7iq7ip8wbbxg''; + url = ''http://beta.quicklisp.org/archive/cl-containers/2020-04-27/cl-containers-20200427-git.tgz''; + sha256 = ''0llaymnlss0dhwyqgr2s38w1hjb2as1x1nn57qcvdphnm7qs50fy''; }; packageName = "cl-containers"; @@ -21,13 +21,13 @@ args @ { fetchurl, ... }: } /* (SYSTEM cl-containers DESCRIPTION A generic container library for Common Lisp SHA256 - 0wlwbz5xv3468iszvmfxnj924mdwx0lyzmhsggiq7iq7ip8wbbxg URL - http://beta.quicklisp.org/archive/cl-containers/2017-04-03/cl-containers-20170403-git.tgz - MD5 17123cd2b018cd3eb048eceef78be3f8 NAME cl-containers FILENAME + 0llaymnlss0dhwyqgr2s38w1hjb2as1x1nn57qcvdphnm7qs50fy URL + http://beta.quicklisp.org/archive/cl-containers/2020-04-27/cl-containers-20200427-git.tgz + MD5 bb0e03a581e9b617dd166a3f511eaf6a NAME cl-containers FILENAME cl-containers DEPS ((NAME asdf-system-connections FILENAME asdf-system-connections) (NAME metatilities-base FILENAME metatilities-base) (NAME moptilities FILENAME moptilities)) DEPENDENCIES (asdf-system-connections metatilities-base moptilities) - VERSION 20170403-git SIBLINGS (cl-containers-test) PARASITES + VERSION 20200427-git SIBLINGS (cl-containers-test) PARASITES (cl-containers/with-moptilities cl-containers/with-utilities)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cookie.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cookie.nix index 5a03d4df4f9..ddc3611d50d 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cookie.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-cookie.nix @@ -5,7 +5,7 @@ rec { description = ''HTTP cookie manager''; - deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cl-fad" args."cl-ppcre" args."cl-utilities" args."local-time" args."proc-parse" args."quri" args."split-sequence" args."trivial-features" ]; + deps = [ args."alexandria" args."babel" args."cl-ppcre" args."cl-utilities" args."local-time" args."proc-parse" args."quri" args."split-sequence" args."trivial-features" ]; src = fetchurl { url = ''http://beta.quicklisp.org/archive/cl-cookie/2019-10-07/cl-cookie-20191007-git.tgz''; @@ -22,14 +22,13 @@ rec { http://beta.quicklisp.org/archive/cl-cookie/2019-10-07/cl-cookie-20191007-git.tgz MD5 37595a6705fdd77415b859aea90d30bc NAME cl-cookie FILENAME cl-cookie DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) - (NAME bordeaux-threads FILENAME bordeaux-threads) - (NAME cl-fad FILENAME cl-fad) (NAME cl-ppcre FILENAME cl-ppcre) + (NAME cl-ppcre FILENAME cl-ppcre) (NAME cl-utilities FILENAME cl-utilities) (NAME local-time FILENAME local-time) (NAME proc-parse FILENAME proc-parse) (NAME quri FILENAME quri) (NAME split-sequence FILENAME split-sequence) (NAME trivial-features FILENAME trivial-features)) DEPENDENCIES - (alexandria babel bordeaux-threads cl-fad cl-ppcre cl-utilities local-time - proc-parse quri split-sequence trivial-features) + (alexandria babel cl-ppcre cl-utilities local-time proc-parse quri + split-sequence trivial-features) VERSION 20191007-git SIBLINGS (cl-cookie-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-csv.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-csv.nix index 1f20b17672d..051ffabfc56 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-csv.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-csv.nix @@ -1,17 +1,17 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-csv''; - version = ''20180831-git''; + version = ''20201016-git''; - parasites = [ "cl-csv/test" ]; + parasites = [ "cl-csv/speed-test" "cl-csv/test" ]; description = ''Facilities for reading and writing CSV format files''; deps = [ args."alexandria" args."cl-interpol" args."cl-ppcre" args."cl-unicode" args."flexi-streams" args."iterate" args."lisp-unit2" args."named-readtables" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-csv/2018-08-31/cl-csv-20180831-git.tgz''; - sha256 = ''0cy2pnzm3c6hmimp0kl5nz03rw6nzgy37i1ifpg9grmd3wipm9fd''; + url = ''http://beta.quicklisp.org/archive/cl-csv/2020-10-16/cl-csv-20201016-git.tgz''; + sha256 = ''1w12ads26v5sgcmy6rjm6ys9lml7l6rz86w776s2an2maci9kzmf''; }; packageName = "cl-csv"; @@ -21,9 +21,9 @@ rec { } /* (SYSTEM cl-csv DESCRIPTION Facilities for reading and writing CSV format files SHA256 - 0cy2pnzm3c6hmimp0kl5nz03rw6nzgy37i1ifpg9grmd3wipm9fd URL - http://beta.quicklisp.org/archive/cl-csv/2018-08-31/cl-csv-20180831-git.tgz - MD5 4bd0ef366dea9d48c4581ed73a208cf3 NAME cl-csv FILENAME cl-csv DEPS + 1w12ads26v5sgcmy6rjm6ys9lml7l6rz86w776s2an2maci9kzmf URL + http://beta.quicklisp.org/archive/cl-csv/2020-10-16/cl-csv-20201016-git.tgz + MD5 3e067784236ab620857fe738dafedb4b NAME cl-csv FILENAME cl-csv DEPS ((NAME alexandria FILENAME alexandria) (NAME cl-interpol FILENAME cl-interpol) (NAME cl-ppcre FILENAME cl-ppcre) (NAME cl-unicode FILENAME cl-unicode) @@ -33,5 +33,5 @@ rec { DEPENDENCIES (alexandria cl-interpol cl-ppcre cl-unicode flexi-streams iterate lisp-unit2 named-readtables) - VERSION 20180831-git SIBLINGS (cl-csv-clsql cl-csv-data-table) PARASITES - (cl-csv/test)) */ + VERSION 20201016-git SIBLINGS (cl-csv-clsql cl-csv-data-table) PARASITES + (cl-csv/speed-test cl-csv/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-dbi.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-dbi.nix index 186d321f834..c5d0f114e10 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-dbi.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-dbi.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-dbi''; - version = ''20191007-git''; + version = ''20200610-git''; description = ''System lacks description''; - deps = [ args."alexandria" args."bordeaux-threads" args."cl-annot" args."cl-syntax" args."cl-syntax-annot" args."closer-mop" args."dbi" args."named-readtables" args."split-sequence" args."trivial-types" ]; + deps = [ args."alexandria" args."bordeaux-threads" args."closer-mop" args."dbi" args."split-sequence" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-dbi/2019-10-07/cl-dbi-20191007-git.tgz''; - sha256 = ''0xsg0xqq88wsx6wf8nllfd0mk356bw2qw3c5c31rfj41wz5vpx35''; + url = ''http://beta.quicklisp.org/archive/cl-dbi/2020-06-10/cl-dbi-20200610-git.tgz''; + sha256 = ''1d7hwywcqzqwmr5b42c0mmjq3v3xxd4cwb4fn5k1wd7j6pr0bkas''; }; packageName = "cl-dbi"; @@ -18,19 +18,13 @@ rec { overrides = x: x; } /* (SYSTEM cl-dbi DESCRIPTION System lacks description SHA256 - 0xsg0xqq88wsx6wf8nllfd0mk356bw2qw3c5c31rfj41wz5vpx35 URL - http://beta.quicklisp.org/archive/cl-dbi/2019-10-07/cl-dbi-20191007-git.tgz - MD5 bf524c4000468d12627fa419ae412abb NAME cl-dbi FILENAME cl-dbi DEPS + 1d7hwywcqzqwmr5b42c0mmjq3v3xxd4cwb4fn5k1wd7j6pr0bkas URL + http://beta.quicklisp.org/archive/cl-dbi/2020-06-10/cl-dbi-20200610-git.tgz + MD5 2caeb911b23327e054986211d6bfea55 NAME cl-dbi FILENAME cl-dbi DEPS ((NAME alexandria FILENAME alexandria) (NAME bordeaux-threads FILENAME bordeaux-threads) - (NAME cl-annot FILENAME cl-annot) (NAME cl-syntax FILENAME cl-syntax) - (NAME cl-syntax-annot FILENAME cl-syntax-annot) (NAME closer-mop FILENAME closer-mop) (NAME dbi FILENAME dbi) - (NAME named-readtables FILENAME named-readtables) - (NAME split-sequence FILENAME split-sequence) - (NAME trivial-types FILENAME trivial-types)) - DEPENDENCIES - (alexandria bordeaux-threads cl-annot cl-syntax cl-syntax-annot closer-mop - dbi named-readtables split-sequence trivial-types) - VERSION 20191007-git SIBLINGS + (NAME split-sequence FILENAME split-sequence)) + DEPENDENCIES (alexandria bordeaux-threads closer-mop dbi split-sequence) + VERSION 20200610-git SIBLINGS (dbd-mysql dbd-postgres dbd-sqlite3 dbi-test dbi) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-dot.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-dot.nix new file mode 100644 index 00000000000..53cf2214ed2 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-dot.nix @@ -0,0 +1,25 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''cl-dot''; + version = ''20200925-git''; + + description = ''Generate Dot Output from Arbitrary Lisp Data''; + + deps = [ args."uiop" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-dot/2020-09-25/cl-dot-20200925-git.tgz''; + sha256 = ''01vx4yzasmgswrlyagjr2cz76g906jsijdwikdf8wvxyyq77gkla''; + }; + + packageName = "cl-dot"; + + asdFilesToKeep = ["cl-dot.asd"]; + overrides = x: x; +} +/* (SYSTEM cl-dot DESCRIPTION Generate Dot Output from Arbitrary Lisp Data + SHA256 01vx4yzasmgswrlyagjr2cz76g906jsijdwikdf8wvxyyq77gkla URL + http://beta.quicklisp.org/archive/cl-dot/2020-09-25/cl-dot-20200925-git.tgz + MD5 35c68f431f188d4c1c7604b4b1af220f NAME cl-dot FILENAME cl-dot DEPS + ((NAME uiop FILENAME uiop)) DEPENDENCIES (uiop) VERSION 20200925-git + SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-fad.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-fad.nix index fd715a17cec..12d7a7ae273 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-fad.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-fad.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-fad''; - version = ''20190813-git''; + version = ''20200610-git''; parasites = [ "cl-fad-test" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."alexandria" args."bordeaux-threads" args."cl-ppcre" args."unit-test" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-fad/2019-08-13/cl-fad-20190813-git.tgz''; - sha256 = ''0kixjb6cqpcmlac5mh4qjlnhjbww32f3pn89g0cnwvz952y8nlng''; + url = ''http://beta.quicklisp.org/archive/cl-fad/2020-06-10/cl-fad-20200610-git.tgz''; + sha256 = ''08d0q2jpjz4djz20w8m86rfkili8g0vdbkkmvn8c88qmvcr79k5x''; }; packageName = "cl-fad"; @@ -20,11 +20,11 @@ rec { overrides = x: x; } /* (SYSTEM cl-fad DESCRIPTION Portable pathname library SHA256 - 0kixjb6cqpcmlac5mh4qjlnhjbww32f3pn89g0cnwvz952y8nlng URL - http://beta.quicklisp.org/archive/cl-fad/2019-08-13/cl-fad-20190813-git.tgz - MD5 7d0405b44fefccb8a807527249ee2700 NAME cl-fad FILENAME cl-fad DEPS + 08d0q2jpjz4djz20w8m86rfkili8g0vdbkkmvn8c88qmvcr79k5x URL + http://beta.quicklisp.org/archive/cl-fad/2020-06-10/cl-fad-20200610-git.tgz + MD5 3229249f64a5ca0f32ce9448e4f554ea NAME cl-fad FILENAME cl-fad DEPS ((NAME alexandria FILENAME alexandria) (NAME bordeaux-threads FILENAME bordeaux-threads) (NAME cl-ppcre FILENAME cl-ppcre) (NAME unit-test FILENAME unit-test)) DEPENDENCIES (alexandria bordeaux-threads cl-ppcre unit-test) VERSION - 20190813-git SIBLINGS NIL PARASITES (cl-fad-test)) */ + 20200610-git SIBLINGS NIL PARASITES (cl-fad-test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-fuse.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-fuse.nix index a581c5a268b..b0a549096b2 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-fuse.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-fuse.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-fuse''; - version = ''20191227-git''; + version = ''20200925-git''; description = ''CFFI bindings to FUSE (Filesystem in user space)''; deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."cl-utilities" args."iterate" args."trivial-backtrace" args."trivial-features" args."trivial-utf-8" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-fuse/2019-12-27/cl-fuse-20191227-git.tgz''; - sha256 = ''1yvzixbbwmi87w9zwc1nf2xngxrb3a2q3sp4l2g3751hbd4i0m38''; + url = ''http://beta.quicklisp.org/archive/cl-fuse/2020-09-25/cl-fuse-20200925-git.tgz''; + sha256 = ''1c5cn0l0md77asw804qssylcbbphw81mfpbijydd0s25q6xga7dp''; }; packageName = "cl-fuse"; @@ -18,9 +18,9 @@ rec { overrides = x: x; } /* (SYSTEM cl-fuse DESCRIPTION CFFI bindings to FUSE (Filesystem in user space) - SHA256 1yvzixbbwmi87w9zwc1nf2xngxrb3a2q3sp4l2g3751hbd4i0m38 URL - http://beta.quicklisp.org/archive/cl-fuse/2019-12-27/cl-fuse-20191227-git.tgz - MD5 3c6f85db7797a2890d8303d11595100d NAME cl-fuse FILENAME cl-fuse DEPS + SHA256 1c5cn0l0md77asw804qssylcbbphw81mfpbijydd0s25q6xga7dp URL + http://beta.quicklisp.org/archive/cl-fuse/2020-09-25/cl-fuse-20200925-git.tgz + MD5 0342ea914801f40d804629170a435e54 NAME cl-fuse FILENAME cl-fuse DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME bordeaux-threads FILENAME bordeaux-threads) (NAME cffi FILENAME cffi) (NAME cffi-grovel FILENAME cffi-grovel) @@ -32,4 +32,4 @@ rec { DEPENDENCIES (alexandria babel bordeaux-threads cffi cffi-grovel cffi-toolchain cl-utilities iterate trivial-backtrace trivial-features trivial-utf-8) - VERSION 20191227-git SIBLINGS NIL PARASITES NIL) */ + VERSION 20200925-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-html-parse.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-html-parse.nix index 61a35f2b58c..6cd859c2cad 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-html-parse.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-html-parse.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-html-parse''; - version = ''20161031-git''; + version = ''20200925-git''; description = ''HTML Parser''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-html-parse/2016-10-31/cl-html-parse-20161031-git.tgz''; - sha256 = ''0i0nl630p9l6rqylydhfqrlqhl5sfq94a9wglx0dajk8gkkqjbnb''; + url = ''http://beta.quicklisp.org/archive/cl-html-parse/2020-09-25/cl-html-parse-20200925-git.tgz''; + sha256 = ''14pfd4gwjb8ywr79dqrcznw6h8a1il3g5b6cm5x9aiyr49zdv15f''; }; packageName = "cl-html-parse"; @@ -18,8 +18,8 @@ rec { overrides = x: x; } /* (SYSTEM cl-html-parse DESCRIPTION HTML Parser SHA256 - 0i0nl630p9l6rqylydhfqrlqhl5sfq94a9wglx0dajk8gkkqjbnb URL - http://beta.quicklisp.org/archive/cl-html-parse/2016-10-31/cl-html-parse-20161031-git.tgz - MD5 7fe933c461eaf2dd442da189d6827a72 NAME cl-html-parse FILENAME - cl-html-parse DEPS NIL DEPENDENCIES NIL VERSION 20161031-git SIBLINGS NIL + 14pfd4gwjb8ywr79dqrcznw6h8a1il3g5b6cm5x9aiyr49zdv15f URL + http://beta.quicklisp.org/archive/cl-html-parse/2020-09-25/cl-html-parse-20200925-git.tgz + MD5 3333eedf037a48900c663fceae3e4cfd NAME cl-html-parse FILENAME + cl-html-parse DEPS NIL DEPENDENCIES NIL VERSION 20200925-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-interpol.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-interpol.nix index b0be8c775a3..50ad66faa23 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-interpol.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-interpol.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-interpol''; - version = ''20180711-git''; + version = ''20200715-git''; parasites = [ "cl-interpol-test" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."cl-ppcre" args."cl-unicode" args."flexi-streams" args."named-readtables" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-interpol/2018-07-11/cl-interpol-20180711-git.tgz''; - sha256 = ''1s88m5kci9y9h3ycvqm0xjzbkbd8zhm9rxp2a674hmgrjfqras0r''; + url = ''http://beta.quicklisp.org/archive/cl-interpol/2020-07-15/cl-interpol-20200715-git.tgz''; + sha256 = ''0qbmpgnlg9y6ykwahmw1q8b058krmcq47w3gx75xz920im46wvmw''; }; packageName = "cl-interpol"; @@ -20,12 +20,12 @@ rec { overrides = x: x; } /* (SYSTEM cl-interpol DESCRIPTION System lacks description SHA256 - 1s88m5kci9y9h3ycvqm0xjzbkbd8zhm9rxp2a674hmgrjfqras0r URL - http://beta.quicklisp.org/archive/cl-interpol/2018-07-11/cl-interpol-20180711-git.tgz - MD5 b2d6893ef703c5b6e5736fa33ba0794e NAME cl-interpol FILENAME cl-interpol + 0qbmpgnlg9y6ykwahmw1q8b058krmcq47w3gx75xz920im46wvmw URL + http://beta.quicklisp.org/archive/cl-interpol/2020-07-15/cl-interpol-20200715-git.tgz + MD5 24a2c8907e35e0a276c37c4b1999681c NAME cl-interpol FILENAME cl-interpol DEPS ((NAME cl-ppcre FILENAME cl-ppcre) (NAME cl-unicode FILENAME cl-unicode) (NAME flexi-streams FILENAME flexi-streams) (NAME named-readtables FILENAME named-readtables)) DEPENDENCIES (cl-ppcre cl-unicode flexi-streams named-readtables) VERSION - 20180711-git SIBLINGS NIL PARASITES (cl-interpol-test)) */ + 20200715-git SIBLINGS NIL PARASITES (cl-interpol-test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-libuv.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-libuv.nix index 36d15673427..ad4780cebe0 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-libuv.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-libuv.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-libuv''; - version = ''20190107-git''; + version = ''20200610-git''; description = ''Low-level libuv bindings for Common Lisp.''; deps = [ args."alexandria" args."babel" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."trivial-features" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-libuv/2019-01-07/cl-libuv-20190107-git.tgz''; - sha256 = ''1cfr29i5j78qy7ax2fs1z4nqyz3kx9121rlpdika12n1zvnhrcm8''; + url = ''http://beta.quicklisp.org/archive/cl-libuv/2020-06-10/cl-libuv-20200610-git.tgz''; + sha256 = ''1ywk1z1ibyk3z0irg5azjrjk3x08ixv30fx4qa0p500fmbfhha19''; }; packageName = "cl-libuv"; @@ -18,13 +18,13 @@ rec { overrides = x: x; } /* (SYSTEM cl-libuv DESCRIPTION Low-level libuv bindings for Common Lisp. - SHA256 1cfr29i5j78qy7ax2fs1z4nqyz3kx9121rlpdika12n1zvnhrcm8 URL - http://beta.quicklisp.org/archive/cl-libuv/2019-01-07/cl-libuv-20190107-git.tgz - MD5 c09c505dc45812cc773454ffc6fdbd38 NAME cl-libuv FILENAME cl-libuv DEPS + SHA256 1ywk1z1ibyk3z0irg5azjrjk3x08ixv30fx4qa0p500fmbfhha19 URL + http://beta.quicklisp.org/archive/cl-libuv/2020-06-10/cl-libuv-20200610-git.tgz + MD5 e6b3f8ffa7b8fb642350f09d1afa7f38 NAME cl-libuv FILENAME cl-libuv DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME cffi FILENAME cffi) (NAME cffi-grovel FILENAME cffi-grovel) (NAME cffi-toolchain FILENAME cffi-toolchain) (NAME trivial-features FILENAME trivial-features)) DEPENDENCIES (alexandria babel cffi cffi-grovel cffi-toolchain trivial-features) VERSION - 20190107-git SIBLINGS NIL PARASITES NIL) */ + 20200610-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-locale.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-locale.nix new file mode 100644 index 00000000000..f0d727a633f --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-locale.nix @@ -0,0 +1,37 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''cl-locale''; + version = ''20151031-git''; + + description = ''Simple i18n library for Common Lisp''; + + deps = [ args."alexandria" args."anaphora" args."arnesi" args."cl-annot" args."cl-syntax" args."cl-syntax-annot" args."closer-mop" args."collectors" args."iterate" args."named-readtables" args."symbol-munger" args."trivial-types" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-locale/2015-10-31/cl-locale-20151031-git.tgz''; + sha256 = ''14j4xazrx2v5cj4q4irfwra0ksvl2l0s7073fimpwc0xqjfsnjpg''; + }; + + packageName = "cl-locale"; + + asdFilesToKeep = ["cl-locale.asd"]; + overrides = x: x; +} +/* (SYSTEM cl-locale DESCRIPTION Simple i18n library for Common Lisp SHA256 + 14j4xazrx2v5cj4q4irfwra0ksvl2l0s7073fimpwc0xqjfsnjpg URL + http://beta.quicklisp.org/archive/cl-locale/2015-10-31/cl-locale-20151031-git.tgz + MD5 7a8fb3678938af6dc5c9fd6431428aff NAME cl-locale FILENAME cl-locale DEPS + ((NAME alexandria FILENAME alexandria) (NAME anaphora FILENAME anaphora) + (NAME arnesi FILENAME arnesi) (NAME cl-annot FILENAME cl-annot) + (NAME cl-syntax FILENAME cl-syntax) + (NAME cl-syntax-annot FILENAME cl-syntax-annot) + (NAME closer-mop FILENAME closer-mop) + (NAME collectors FILENAME collectors) (NAME iterate FILENAME iterate) + (NAME named-readtables FILENAME named-readtables) + (NAME symbol-munger FILENAME symbol-munger) + (NAME trivial-types FILENAME trivial-types)) + DEPENDENCIES + (alexandria anaphora arnesi cl-annot cl-syntax cl-syntax-annot closer-mop + collectors iterate named-readtables symbol-munger trivial-types) + VERSION 20151031-git SIBLINGS (cl-locale-syntax cl-locale-test) PARASITES + NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-log.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-log.nix deleted file mode 100644 index 9c623c2278e..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-log.nix +++ /dev/null @@ -1,24 +0,0 @@ -{ fetchurl, ... }: -{ - baseName = ''cl-log''; - version = ''cl-log.1.0.1''; - - description = ''CL-LOG - a general purpose logging utility''; - - deps = [ ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-log/2013-01-28/cl-log.1.0.1.tgz''; - sha256 = ''0wdbq0x6xn21qp3zd49giss3viv8wbs3ga8bg2grfnmzwfwl0y2d''; - }; - - packageName = "cl-log"; - - asdFilesToKeep = ["cl-log.asd"]; - overrides = x: x; -} -/* (SYSTEM cl-log DESCRIPTION CL-LOG - a general purpose logging utility SHA256 - 0wdbq0x6xn21qp3zd49giss3viv8wbs3ga8bg2grfnmzwfwl0y2d URL - http://beta.quicklisp.org/archive/cl-log/2013-01-28/cl-log.1.0.1.tgz MD5 - fb960933eb748c14adc3ccb376ac8066 NAME cl-log FILENAME cl-log DEPS NIL - DEPENDENCIES NIL VERSION cl-log.1.0.1 SIBLINGS (cl-log-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-markdown.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-markdown.nix deleted file mode 100644 index 0f3d0c126ff..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-markdown.nix +++ /dev/null @@ -1,36 +0,0 @@ -args @ { fetchurl, ... }: -{ - baseName = ''cl-markdown''; - version = ''20101006-darcs''; - - description = ''''; - - deps = [ args."anaphora" args."asdf-system-connections" args."cl-containers" args."cl-ppcre" args."dynamic-classes" args."metabang-bind" args."metatilities-base" ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-markdown/2010-10-06/cl-markdown-20101006-darcs.tgz''; - sha256 = ''1hrv7szhmhxgbadwrmf6wx4kwkbg3dnabbsz4hfffzjgprwac79w''; - }; - - packageName = "cl-markdown"; - - asdFilesToKeep = ["cl-markdown.asd"]; - overrides = x: x; -} -/* (SYSTEM cl-markdown DESCRIPTION NIL SHA256 - 1hrv7szhmhxgbadwrmf6wx4kwkbg3dnabbsz4hfffzjgprwac79w URL - http://beta.quicklisp.org/archive/cl-markdown/2010-10-06/cl-markdown-20101006-darcs.tgz - MD5 3e748529531ad1dcbee5443fe24b6300 NAME cl-markdown FILENAME cl-markdown - DEPS - ((NAME anaphora FILENAME anaphora) - (NAME asdf-system-connections FILENAME asdf-system-connections) - (NAME cl-containers FILENAME cl-containers) - (NAME cl-ppcre FILENAME cl-ppcre) - (NAME dynamic-classes FILENAME dynamic-classes) - (NAME metabang-bind FILENAME metabang-bind) - (NAME metatilities-base FILENAME metatilities-base)) - DEPENDENCIES - (anaphora asdf-system-connections cl-containers cl-ppcre dynamic-classes - metabang-bind metatilities-base) - VERSION 20101006-darcs SIBLINGS (cl-markdown-comparisons cl-markdown-test) - PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-mysql.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-mysql.nix index 1590f2536e3..97b714d8b64 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-mysql.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-mysql.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-mysql''; - version = ''20171019-git''; + version = ''20200610-git''; description = ''Common Lisp MySQL library bindings''; deps = [ args."alexandria" args."babel" args."cffi" args."trivial-features" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-mysql/2017-10-19/cl-mysql-20171019-git.tgz''; - sha256 = ''1ga44gkwg6lm225gqpacpqpr6bpswszmw1ba9jhvjpjm09zinyc5''; + url = ''http://beta.quicklisp.org/archive/cl-mysql/2020-06-10/cl-mysql-20200610-git.tgz''; + sha256 = ''0fzyqzz01zn9fy8v766lib3dghg9yq5wawa0hcmxslms7knzxz7w''; }; packageName = "cl-mysql"; @@ -18,11 +18,11 @@ rec { overrides = x: x; } /* (SYSTEM cl-mysql DESCRIPTION Common Lisp MySQL library bindings SHA256 - 1ga44gkwg6lm225gqpacpqpr6bpswszmw1ba9jhvjpjm09zinyc5 URL - http://beta.quicklisp.org/archive/cl-mysql/2017-10-19/cl-mysql-20171019-git.tgz - MD5 e1021da4d35cbb584d4df4f0d7e2bbb9 NAME cl-mysql FILENAME cl-mysql DEPS + 0fzyqzz01zn9fy8v766lib3dghg9yq5wawa0hcmxslms7knzxz7w URL + http://beta.quicklisp.org/archive/cl-mysql/2020-06-10/cl-mysql-20200610-git.tgz + MD5 05d5ed6b48edbafd258e189d7868822e NAME cl-mysql FILENAME cl-mysql DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME cffi FILENAME cffi) (NAME trivial-features FILENAME trivial-features)) - DEPENDENCIES (alexandria babel cffi trivial-features) VERSION 20171019-git + DEPENDENCIES (alexandria babel cffi trivial-features) VERSION 20200610-git SIBLINGS (cl-mysql-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-postgres.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-postgres.nix index 9ef0248157a..85212e61328 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-postgres.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-postgres.nix @@ -1,17 +1,17 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-postgres''; - version = ''postmodern-20191227-git''; + version = ''postmodern-20201016-git''; - parasites = [ "cl-postgres/tests" ]; + parasites = [ "cl-postgres/simple-date-tests" "cl-postgres/tests" ]; description = ''Low-level client library for PostgreSQL''; - deps = [ args."fiveam" args."md5" args."split-sequence" args."usocket" ]; + deps = [ args."alexandria" args."bordeaux-threads" args."cl-base64" args."cl-ppcre" args."fiveam" args."ironclad" args."md5" args."simple-date" args."simple-date_slash_postgres-glue" args."split-sequence" args."uax-15" args."usocket" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/postmodern/2019-12-27/postmodern-20191227-git.tgz''; - sha256 = ''1p44aphx7y0lh018pk2r9w006vinc5yrfrp1m9l9648p2jxiw1c4''; + url = ''http://beta.quicklisp.org/archive/postmodern/2020-10-16/postmodern-20201016-git.tgz''; + sha256 = ''1svaiksbqcaq8sh7q6sj9kzazdfl360zqr2nzhwbgy4xnaj4vf3n''; }; packageName = "cl-postgres"; @@ -20,13 +20,20 @@ rec { overrides = x: x; } /* (SYSTEM cl-postgres DESCRIPTION Low-level client library for PostgreSQL - SHA256 1p44aphx7y0lh018pk2r9w006vinc5yrfrp1m9l9648p2jxiw1c4 URL - http://beta.quicklisp.org/archive/postmodern/2019-12-27/postmodern-20191227-git.tgz - MD5 67b909de432e6414e7832eed18f9ad18 NAME cl-postgres FILENAME cl-postgres + SHA256 1svaiksbqcaq8sh7q6sj9kzazdfl360zqr2nzhwbgy4xnaj4vf3n URL + http://beta.quicklisp.org/archive/postmodern/2020-10-16/postmodern-20201016-git.tgz + MD5 f61e827d7e7ba023f6fbc7c2667de4c8 NAME cl-postgres FILENAME cl-postgres DEPS - ((NAME fiveam FILENAME fiveam) (NAME md5 FILENAME md5) + ((NAME alexandria FILENAME alexandria) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME cl-base64 FILENAME cl-base64) (NAME cl-ppcre FILENAME cl-ppcre) + (NAME fiveam FILENAME fiveam) (NAME ironclad FILENAME ironclad) + (NAME md5 FILENAME md5) (NAME simple-date FILENAME simple-date) + (NAME simple-date/postgres-glue FILENAME simple-date_slash_postgres-glue) (NAME split-sequence FILENAME split-sequence) - (NAME usocket FILENAME usocket)) - DEPENDENCIES (fiveam md5 split-sequence usocket) VERSION - postmodern-20191227-git SIBLINGS (postmodern s-sql simple-date) PARASITES - (cl-postgres/tests)) */ + (NAME uax-15 FILENAME uax-15) (NAME usocket FILENAME usocket)) + DEPENDENCIES + (alexandria bordeaux-threads cl-base64 cl-ppcre fiveam ironclad md5 + simple-date simple-date/postgres-glue split-sequence uax-15 usocket) + VERSION postmodern-20201016-git SIBLINGS (postmodern s-sql simple-date) + PARASITES (cl-postgres/simple-date-tests cl-postgres/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-ppcre-template.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-ppcre-template.nix index 4c97f03870f..3856d777c56 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-ppcre-template.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-ppcre-template.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-ppcre-template''; - version = ''cl-unification-20190107-git''; + version = ''cl-unification-20200925-git''; description = ''A system used to conditionally load the CL-PPCRE Template. @@ -12,8 +12,8 @@ REGULAR-EXPRESSION-TEMPLATE.''; deps = [ args."cl-ppcre" args."cl-unification" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-unification/2019-01-07/cl-unification-20190107-git.tgz''; - sha256 = ''0mp40wh58afnpqx9i9wg5x364g35rkd6c9d5hb9g6pdxadqx0cfv''; + url = ''http://beta.quicklisp.org/archive/cl-unification/2020-09-25/cl-unification-20200925-git.tgz''; + sha256 = ''05i1bmbabfgym9v28cbl37yr0r1m4a4k4a844z6wlq6qf45vzais''; }; packageName = "cl-ppcre-template"; @@ -27,12 +27,12 @@ REGULAR-EXPRESSION-TEMPLATE.''; This system is not required and it is handled only if CL-PPCRE is available. If it is, then the library provides the REGULAR-EXPRESSION-TEMPLATE. - SHA256 0mp40wh58afnpqx9i9wg5x364g35rkd6c9d5hb9g6pdxadqx0cfv URL - http://beta.quicklisp.org/archive/cl-unification/2019-01-07/cl-unification-20190107-git.tgz - MD5 a7a12789cc48e571b0871d55cef11b7f NAME cl-ppcre-template FILENAME + SHA256 05i1bmbabfgym9v28cbl37yr0r1m4a4k4a844z6wlq6qf45vzais URL + http://beta.quicklisp.org/archive/cl-unification/2020-09-25/cl-unification-20200925-git.tgz + MD5 90588d566c2e12dac3530b65384a87ab NAME cl-ppcre-template FILENAME cl-ppcre-template DEPS ((NAME cl-ppcre FILENAME cl-ppcre) (NAME cl-unification FILENAME cl-unification)) - DEPENDENCIES (cl-ppcre cl-unification) VERSION cl-unification-20190107-git + DEPENDENCIES (cl-ppcre cl-unification) VERSION cl-unification-20200925-git SIBLINGS (cl-unification-lib cl-unification-test cl-unification) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-prevalence.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-prevalence.nix index c6afca1d8ca..ddfc92b2cb3 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-prevalence.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-prevalence.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-prevalence''; - version = ''20191130-git''; + version = ''20200715-git''; description = ''Common Lisp Prevalence Package''; - deps = [ args."s-sysdeps" args."s-xml" ]; + deps = [ args."alexandria" args."bordeaux-threads" args."s-sysdeps" args."s-xml" args."split-sequence" args."usocket" args."usocket-server" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-prevalence/2019-11-30/cl-prevalence-20191130-git.tgz''; - sha256 = ''01pk77nhyv89zd9sf78i0gch9swxlaw3sqnjdnx4329ww6qv2sg4''; + url = ''http://beta.quicklisp.org/archive/cl-prevalence/2020-07-15/cl-prevalence-20200715-git.tgz''; + sha256 = ''1m2wrqnly9i35kjk2wydwywjmwkbh3a3f4ds7wl63q8kpn8g0ibd''; }; packageName = "cl-prevalence"; @@ -18,10 +18,17 @@ rec { overrides = x: x; } /* (SYSTEM cl-prevalence DESCRIPTION Common Lisp Prevalence Package SHA256 - 01pk77nhyv89zd9sf78i0gch9swxlaw3sqnjdnx4329ww6qv2sg4 URL - http://beta.quicklisp.org/archive/cl-prevalence/2019-11-30/cl-prevalence-20191130-git.tgz - MD5 7615cb79ec797a5520941aedc3101390 NAME cl-prevalence FILENAME + 1m2wrqnly9i35kjk2wydwywjmwkbh3a3f4ds7wl63q8kpn8g0ibd URL + http://beta.quicklisp.org/archive/cl-prevalence/2020-07-15/cl-prevalence-20200715-git.tgz + MD5 d01b70db724ac8408b072ac39bbd8837 NAME cl-prevalence FILENAME cl-prevalence DEPS - ((NAME s-sysdeps FILENAME s-sysdeps) (NAME s-xml FILENAME s-xml)) - DEPENDENCIES (s-sysdeps s-xml) VERSION 20191130-git SIBLINGS - (cl-prevalence-test) PARASITES NIL) */ + ((NAME alexandria FILENAME alexandria) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME s-sysdeps FILENAME s-sysdeps) (NAME s-xml FILENAME s-xml) + (NAME split-sequence FILENAME split-sequence) + (NAME usocket FILENAME usocket) + (NAME usocket-server FILENAME usocket-server)) + DEPENDENCIES + (alexandria bordeaux-threads s-sysdeps s-xml split-sequence usocket + usocket-server) + VERSION 20200715-git SIBLINGS (cl-prevalence-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-project.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-project.nix index 496a0bd4e56..e88b9efe366 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-project.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-project.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-project''; - version = ''20190521-git''; + version = ''20200715-git''; description = ''Generate a skeleton for modern project''; - deps = [ args."alexandria" args."anaphora" args."bordeaux-threads" args."cl-ansi-text" args."cl-colors" args."cl-emb" args."cl-fad" args."cl-ppcre" args."let-plus" args."local-time" args."prove" args."uiop" ]; + deps = [ args."alexandria" args."anaphora" args."cl-ansi-text" args."cl-colors" args."cl-colors2" args."cl-emb" args."cl-ppcre" args."let-plus" args."local-time" args."prove" args."uiop" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-project/2019-05-21/cl-project-20190521-git.tgz''; - sha256 = ''1wm1php6bdyy1gy76vfxlmh1lm7snqg1mhpzhkcmqrrmz0jx0gnf''; + url = ''http://beta.quicklisp.org/archive/cl-project/2020-07-15/cl-project-20200715-git.tgz''; + sha256 = ''044rx97wc839a8q2wv271s07bnsasl6x5fx4gr5pvy34jbrhp306''; }; packageName = "cl-project"; @@ -18,18 +18,17 @@ rec { overrides = x: x; } /* (SYSTEM cl-project DESCRIPTION Generate a skeleton for modern project SHA256 - 1wm1php6bdyy1gy76vfxlmh1lm7snqg1mhpzhkcmqrrmz0jx0gnf URL - http://beta.quicklisp.org/archive/cl-project/2019-05-21/cl-project-20190521-git.tgz - MD5 1468189ff8880f43034c44adc317274f NAME cl-project FILENAME cl-project + 044rx97wc839a8q2wv271s07bnsasl6x5fx4gr5pvy34jbrhp306 URL + http://beta.quicklisp.org/archive/cl-project/2020-07-15/cl-project-20200715-git.tgz + MD5 12b436050ad0106cf292707ae39d8572 NAME cl-project FILENAME cl-project DEPS ((NAME alexandria FILENAME alexandria) (NAME anaphora FILENAME anaphora) - (NAME bordeaux-threads FILENAME bordeaux-threads) (NAME cl-ansi-text FILENAME cl-ansi-text) - (NAME cl-colors FILENAME cl-colors) (NAME cl-emb FILENAME cl-emb) - (NAME cl-fad FILENAME cl-fad) (NAME cl-ppcre FILENAME cl-ppcre) + (NAME cl-colors FILENAME cl-colors) (NAME cl-colors2 FILENAME cl-colors2) + (NAME cl-emb FILENAME cl-emb) (NAME cl-ppcre FILENAME cl-ppcre) (NAME let-plus FILENAME let-plus) (NAME local-time FILENAME local-time) (NAME prove FILENAME prove) (NAME uiop FILENAME uiop)) DEPENDENCIES - (alexandria anaphora bordeaux-threads cl-ansi-text cl-colors cl-emb cl-fad - cl-ppcre let-plus local-time prove uiop) - VERSION 20190521-git SIBLINGS (cl-project-test) PARASITES NIL) */ + (alexandria anaphora cl-ansi-text cl-colors cl-colors2 cl-emb cl-ppcre + let-plus local-time prove uiop) + VERSION 20200715-git SIBLINGS (cl-project-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-protobufs.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-protobufs.nix index 046f910a866..7339fcdffeb 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-protobufs.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-protobufs.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-protobufs''; - version = ''20180328-git''; + version = ''20200325-git''; description = ''Protobufs for Common Lisp''; deps = [ args."alexandria" args."babel" args."closer-mop" args."trivial-features" args."trivial-garbage" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-protobufs/2018-03-28/cl-protobufs-20180328-git.tgz''; - sha256 = ''0pkm5mphs2yks8v1i8wxq92ywm6fx9lasybrx8rccrd7dm156nzj''; + url = ''http://beta.quicklisp.org/archive/cl-protobufs/2020-03-25/cl-protobufs-20200325-git.tgz''; + sha256 = ''1sgvp038bvd3mq2f0xh4wawf8h21jmw449yjyahidh1zfqdibpin''; }; packageName = "cl-protobufs"; @@ -18,13 +18,13 @@ rec { overrides = x: x; } /* (SYSTEM cl-protobufs DESCRIPTION Protobufs for Common Lisp SHA256 - 0pkm5mphs2yks8v1i8wxq92ywm6fx9lasybrx8rccrd7dm156nzj URL - http://beta.quicklisp.org/archive/cl-protobufs/2018-03-28/cl-protobufs-20180328-git.tgz - MD5 6573322beb8f27653f0c9b418c5f5b92 NAME cl-protobufs FILENAME + 1sgvp038bvd3mq2f0xh4wawf8h21jmw449yjyahidh1zfqdibpin URL + http://beta.quicklisp.org/archive/cl-protobufs/2020-03-25/cl-protobufs-20200325-git.tgz + MD5 9fb9af8bd53796b3cf8f358762095899 NAME cl-protobufs FILENAME cl-protobufs DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME closer-mop FILENAME closer-mop) (NAME trivial-features FILENAME trivial-features) (NAME trivial-garbage FILENAME trivial-garbage)) DEPENDENCIES (alexandria babel closer-mop trivial-features trivial-garbage) - VERSION 20180328-git SIBLINGS (cl-protobufs-tests) PARASITES NIL) */ + VERSION 20200325-git SIBLINGS (cl-protobufs-tests) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-qprint.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-qprint.nix new file mode 100644 index 00000000000..1ccf6af5cba --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-qprint.nix @@ -0,0 +1,28 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''cl-qprint''; + version = ''20150804-git''; + + description = ''Encode and decode quoted-printable encoded strings.''; + + deps = [ args."flexi-streams" args."trivial-gray-streams" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-qprint/2015-08-04/cl-qprint-20150804-git.tgz''; + sha256 = ''042nq9airkc4yaqzpmly5iszmkbwfn38wsgi9k361ldf1y54lq28''; + }; + + packageName = "cl-qprint"; + + asdFilesToKeep = ["cl-qprint.asd"]; + overrides = x: x; +} +/* (SYSTEM cl-qprint DESCRIPTION + Encode and decode quoted-printable encoded strings. SHA256 + 042nq9airkc4yaqzpmly5iszmkbwfn38wsgi9k361ldf1y54lq28 URL + http://beta.quicklisp.org/archive/cl-qprint/2015-08-04/cl-qprint-20150804-git.tgz + MD5 74376a69e0b078724c94cc268f69e0f7 NAME cl-qprint FILENAME cl-qprint DEPS + ((NAME flexi-streams FILENAME flexi-streams) + (NAME trivial-gray-streams FILENAME trivial-gray-streams)) + DEPENDENCIES (flexi-streams trivial-gray-streams) VERSION 20150804-git + SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-slice.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-slice.nix new file mode 100644 index 00000000000..2c4fd03f94d --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-slice.nix @@ -0,0 +1,29 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''cl-slice''; + version = ''20171130-git''; + + parasites = [ "cl-slice-tests" ]; + + description = ''DSL for array slices in Common Lisp.''; + + deps = [ args."alexandria" args."anaphora" args."clunit" args."let-plus" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-slice/2017-11-30/cl-slice-20171130-git.tgz''; + sha256 = ''0nay95qsnck40kdxjgjdii5rcgrdhf880pg9ajmbxilgw84xb2zn''; + }; + + packageName = "cl-slice"; + + asdFilesToKeep = ["cl-slice.asd"]; + overrides = x: x; +} +/* (SYSTEM cl-slice DESCRIPTION DSL for array slices in Common Lisp. SHA256 + 0nay95qsnck40kdxjgjdii5rcgrdhf880pg9ajmbxilgw84xb2zn URL + http://beta.quicklisp.org/archive/cl-slice/2017-11-30/cl-slice-20171130-git.tgz + MD5 b83a7a9aa503dc01cba43cf1e494e67d NAME cl-slice FILENAME cl-slice DEPS + ((NAME alexandria FILENAME alexandria) (NAME anaphora FILENAME anaphora) + (NAME clunit FILENAME clunit) (NAME let-plus FILENAME let-plus)) + DEPENDENCIES (alexandria anaphora clunit let-plus) VERSION 20171130-git + SIBLINGS NIL PARASITES (cl-slice-tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-store.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-store.nix index a160cef9e03..d97bd34f275 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-store.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-store.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-store''; - version = ''20191130-git''; + version = ''20200925-git''; parasites = [ "cl-store-tests" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."rt" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-store/2019-11-30/cl-store-20191130-git.tgz''; - sha256 = ''1pybx08w486d3bmn8fc6zxvxyprc3da24kk3wxhkrgh0fi1vmcbc''; + url = ''http://beta.quicklisp.org/archive/cl-store/2020-09-25/cl-store-20200925-git.tgz''; + sha256 = ''0vqlrci1634jgfg6c1dzwvx58qjjwbcbwdbpm7xxw2s823xl9jf3''; }; packageName = "cl-store"; @@ -20,8 +20,8 @@ rec { overrides = x: x; } /* (SYSTEM cl-store DESCRIPTION Serialization package SHA256 - 1pybx08w486d3bmn8fc6zxvxyprc3da24kk3wxhkrgh0fi1vmcbc URL - http://beta.quicklisp.org/archive/cl-store/2019-11-30/cl-store-20191130-git.tgz - MD5 d6052274cd0c6a86bfc2de1e4a8a0886 NAME cl-store FILENAME cl-store DEPS - ((NAME rt FILENAME rt)) DEPENDENCIES (rt) VERSION 20191130-git SIBLINGS NIL + 0vqlrci1634jgfg6c1dzwvx58qjjwbcbwdbpm7xxw2s823xl9jf3 URL + http://beta.quicklisp.org/archive/cl-store/2020-09-25/cl-store-20200925-git.tgz + MD5 828a6f3035c5ef869618f6848c47efd7 NAME cl-store FILENAME cl-store DEPS + ((NAME rt FILENAME rt)) DEPENDENCIES (rt) VERSION 20200925-git SIBLINGS NIL PARASITES (cl-store-tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-test-more.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-test-more.nix index 56d9b363268..419994fb248 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-test-more.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-test-more.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-test-more''; - version = ''prove-20171130-git''; + version = ''prove-20200218-git''; description = ''System lacks description''; - deps = [ args."alexandria" args."anaphora" args."cl-ansi-text" args."cl-colors" args."cl-ppcre" args."let-plus" args."prove" ]; + deps = [ args."alexandria" args."anaphora" args."cl-ansi-text" args."cl-colors" args."cl-colors2" args."cl-ppcre" args."let-plus" args."prove" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/prove/2017-11-30/prove-20171130-git.tgz''; - sha256 = ''13dmnnlk3r9fxxcvk6sqq8m0ifv9y80zgp1wg63nv1ykwdi7kyar''; + url = ''http://beta.quicklisp.org/archive/prove/2020-02-18/prove-20200218-git.tgz''; + sha256 = ''1sv3zyam9sdmyis5lyv0khvw82q7bcpsycpj9b3bsv9isb4j30zn''; }; packageName = "cl-test-more"; @@ -18,15 +18,17 @@ rec { overrides = x: x; } /* (SYSTEM cl-test-more DESCRIPTION System lacks description SHA256 - 13dmnnlk3r9fxxcvk6sqq8m0ifv9y80zgp1wg63nv1ykwdi7kyar URL - http://beta.quicklisp.org/archive/prove/2017-11-30/prove-20171130-git.tgz - MD5 630df4367537f799570be40242f8ed52 NAME cl-test-more FILENAME + 1sv3zyam9sdmyis5lyv0khvw82q7bcpsycpj9b3bsv9isb4j30zn URL + http://beta.quicklisp.org/archive/prove/2020-02-18/prove-20200218-git.tgz + MD5 85780b65e84c17a78d658364b8c4d11b NAME cl-test-more FILENAME cl-test-more DEPS ((NAME alexandria FILENAME alexandria) (NAME anaphora FILENAME anaphora) (NAME cl-ansi-text FILENAME cl-ansi-text) - (NAME cl-colors FILENAME cl-colors) (NAME cl-ppcre FILENAME cl-ppcre) - (NAME let-plus FILENAME let-plus) (NAME prove FILENAME prove)) + (NAME cl-colors FILENAME cl-colors) (NAME cl-colors2 FILENAME cl-colors2) + (NAME cl-ppcre FILENAME cl-ppcre) (NAME let-plus FILENAME let-plus) + (NAME prove FILENAME prove)) DEPENDENCIES - (alexandria anaphora cl-ansi-text cl-colors cl-ppcre let-plus prove) - VERSION prove-20171130-git SIBLINGS (prove-asdf prove-test prove) PARASITES + (alexandria anaphora cl-ansi-text cl-colors cl-colors2 cl-ppcre let-plus + prove) + VERSION prove-20200218-git SIBLINGS (prove-asdf prove-test prove) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-unification.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-unification.nix index dbdd53a9346..38903abe98b 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-unification.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-unification.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''cl-unification''; - version = ''20190107-git''; + version = ''20200925-git''; description = ''The CL-UNIFICATION system. @@ -10,8 +10,8 @@ The system contains the definitions for the 'unification' machinery.''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-unification/2019-01-07/cl-unification-20190107-git.tgz''; - sha256 = ''0mp40wh58afnpqx9i9wg5x364g35rkd6c9d5hb9g6pdxadqx0cfv''; + url = ''http://beta.quicklisp.org/archive/cl-unification/2020-09-25/cl-unification-20200925-git.tgz''; + sha256 = ''05i1bmbabfgym9v28cbl37yr0r1m4a4k4a844z6wlq6qf45vzais''; }; packageName = "cl-unification"; @@ -22,8 +22,8 @@ The system contains the definitions for the 'unification' machinery.''; /* (SYSTEM cl-unification DESCRIPTION The CL-UNIFICATION system. The system contains the definitions for the 'unification' machinery. - SHA256 0mp40wh58afnpqx9i9wg5x364g35rkd6c9d5hb9g6pdxadqx0cfv URL - http://beta.quicklisp.org/archive/cl-unification/2019-01-07/cl-unification-20190107-git.tgz - MD5 a7a12789cc48e571b0871d55cef11b7f NAME cl-unification FILENAME - cl-unification DEPS NIL DEPENDENCIES NIL VERSION 20190107-git SIBLINGS + SHA256 05i1bmbabfgym9v28cbl37yr0r1m4a4k4a844z6wlq6qf45vzais URL + http://beta.quicklisp.org/archive/cl-unification/2020-09-25/cl-unification-20200925-git.tgz + MD5 90588d566c2e12dac3530b65384a87ab NAME cl-unification FILENAME + cl-unification DEPS NIL DEPENDENCIES NIL VERSION 20200925-git SIBLINGS (cl-unification-lib cl-unification-test cl-ppcre-template) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-webkit2.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-webkit2.nix new file mode 100644 index 00000000000..01a2732a7ec --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl-webkit2.nix @@ -0,0 +1,43 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''cl-webkit2''; + version = ''cl-webkit-20201016-git''; + + description = ''An FFI binding to WebKit2GTK+''; + + deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cl-cffi-gtk" args."cl-cffi-gtk-cairo" args."cl-cffi-gtk-gdk" args."cl-cffi-gtk-gdk-pixbuf" args."cl-cffi-gtk-gio" args."cl-cffi-gtk-glib" args."cl-cffi-gtk-gobject" args."cl-cffi-gtk-pango" args."closer-mop" args."iterate" args."trivial-features" args."trivial-garbage" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-webkit/2020-10-16/cl-webkit-20201016-git.tgz''; + sha256 = ''15xykhjz3j7ad3m853x1hriv3mz6zsgaqdnlc3wk664ka0f7k0vh''; + }; + + packageName = "cl-webkit2"; + + asdFilesToKeep = ["cl-webkit2.asd"]; + overrides = x: x; +} +/* (SYSTEM cl-webkit2 DESCRIPTION An FFI binding to WebKit2GTK+ SHA256 + 15xykhjz3j7ad3m853x1hriv3mz6zsgaqdnlc3wk664ka0f7k0vh URL + http://beta.quicklisp.org/archive/cl-webkit/2020-10-16/cl-webkit-20201016-git.tgz + MD5 d7b482185cf5a403d5211626560d2f66 NAME cl-webkit2 FILENAME cl-webkit2 + DEPS + ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME cffi FILENAME cffi) (NAME cl-cffi-gtk FILENAME cl-cffi-gtk) + (NAME cl-cffi-gtk-cairo FILENAME cl-cffi-gtk-cairo) + (NAME cl-cffi-gtk-gdk FILENAME cl-cffi-gtk-gdk) + (NAME cl-cffi-gtk-gdk-pixbuf FILENAME cl-cffi-gtk-gdk-pixbuf) + (NAME cl-cffi-gtk-gio FILENAME cl-cffi-gtk-gio) + (NAME cl-cffi-gtk-glib FILENAME cl-cffi-gtk-glib) + (NAME cl-cffi-gtk-gobject FILENAME cl-cffi-gtk-gobject) + (NAME cl-cffi-gtk-pango FILENAME cl-cffi-gtk-pango) + (NAME closer-mop FILENAME closer-mop) (NAME iterate FILENAME iterate) + (NAME trivial-features FILENAME trivial-features) + (NAME trivial-garbage FILENAME trivial-garbage)) + DEPENDENCIES + (alexandria babel bordeaux-threads cffi cl-cffi-gtk cl-cffi-gtk-cairo + cl-cffi-gtk-gdk cl-cffi-gtk-gdk-pixbuf cl-cffi-gtk-gio cl-cffi-gtk-glib + cl-cffi-gtk-gobject cl-cffi-gtk-pango closer-mop iterate trivial-features + trivial-garbage) + VERSION cl-webkit-20201016-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl_plus_ssl.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl_plus_ssl.nix index 4c9ff159d99..5a1ae8550aa 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl_plus_ssl.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cl_plus_ssl.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''cl_plus_ssl''; - version = ''cl+ssl-20191130-git''; + version = ''cl+ssl-20200610-git''; description = ''Common Lisp interface to OpenSSL.''; deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."flexi-streams" args."trivial-features" args."trivial-garbage" args."trivial-gray-streams" args."uiop" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl+ssl/2019-11-30/cl+ssl-20191130-git.tgz''; - sha256 = ''073ba82xb0jsqlmhv46g7n31j0k2ahw6bw02a51qg77l7wxnms23''; + url = ''http://beta.quicklisp.org/archive/cl+ssl/2020-06-10/cl+ssl-20200610-git.tgz''; + sha256 = ''1kijg8vlwcxraknp4gadf3n5zjchkgg8axr94v3kas9rb717r6ql''; }; packageName = "cl+ssl"; @@ -18,9 +18,9 @@ rec { overrides = x: x; } /* (SYSTEM cl+ssl DESCRIPTION Common Lisp interface to OpenSSL. SHA256 - 073ba82xb0jsqlmhv46g7n31j0k2ahw6bw02a51qg77l7wxnms23 URL - http://beta.quicklisp.org/archive/cl+ssl/2019-11-30/cl+ssl-20191130-git.tgz - MD5 995aaef02ec5112a0de78b2533691629 NAME cl+ssl FILENAME cl_plus_ssl DEPS + 1kijg8vlwcxraknp4gadf3n5zjchkgg8axr94v3kas9rb717r6ql URL + http://beta.quicklisp.org/archive/cl+ssl/2020-06-10/cl+ssl-20200610-git.tgz + MD5 e6f124e4900191b354827312dfc8df3d NAME cl+ssl FILENAME cl_plus_ssl DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME bordeaux-threads FILENAME bordeaux-threads) (NAME cffi FILENAME cffi) (NAME flexi-streams FILENAME flexi-streams) @@ -31,4 +31,4 @@ rec { DEPENDENCIES (alexandria babel bordeaux-threads cffi flexi-streams trivial-features trivial-garbage trivial-gray-streams uiop) - VERSION cl+ssl-20191130-git SIBLINGS (cl+ssl.test) PARASITES NIL) */ + VERSION cl+ssl-20200610-git SIBLINGS (cl+ssl.test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clack-test.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clack-test.nix index 6350dcdece4..64e6a694628 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clack-test.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clack-test.nix @@ -5,7 +5,7 @@ rec { description = ''Testing Clack Applications.''; - deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."chipz" args."chunga" args."cl_plus_ssl" args."cl-annot" args."cl-base64" args."cl-cookie" args."cl-fad" args."cl-ppcre" args."cl-reexport" args."cl-syntax" args."cl-syntax-annot" args."cl-utilities" args."clack" args."clack-handler-hunchentoot" args."clack-socket" args."dexador" args."dissect" args."fast-http" args."fast-io" args."flexi-streams" args."http-body" args."hunchentoot" args."ironclad" args."jonathan" args."lack" args."lack-component" args."lack-middleware-backtrace" args."lack-util" args."local-time" args."md5" args."named-readtables" args."nibbles" args."proc-parse" args."quri" args."rfc2388" args."rove" args."smart-buffer" args."split-sequence" args."static-vectors" args."trivial-backtrace" args."trivial-features" args."trivial-garbage" args."trivial-gray-streams" args."trivial-mimes" args."trivial-types" args."usocket" args."xsubseq" ]; + deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."chipz" args."chunga" args."cl_plus_ssl" args."cl-annot" args."cl-base64" args."cl-cookie" args."cl-fad" args."cl-ppcre" args."cl-reexport" args."cl-syntax" args."cl-syntax-annot" args."cl-utilities" args."clack" args."clack-handler-hunchentoot" args."clack-socket" args."dexador" args."dissect" args."fast-http" args."fast-io" args."flexi-streams" args."http-body" args."hunchentoot" args."ironclad" args."jonathan" args."lack" args."lack-component" args."lack-middleware-backtrace" args."lack-util" args."local-time" args."md5" args."named-readtables" args."proc-parse" args."quri" args."rfc2388" args."rove" args."smart-buffer" args."split-sequence" args."static-vectors" args."trivial-backtrace" args."trivial-features" args."trivial-garbage" args."trivial-gray-streams" args."trivial-mimes" args."trivial-types" args."usocket" args."xsubseq" ]; src = fetchurl { url = ''http://beta.quicklisp.org/archive/clack/2019-10-07/clack-20191007-git.tgz''; @@ -45,9 +45,9 @@ rec { (NAME lack-middleware-backtrace FILENAME lack-middleware-backtrace) (NAME lack-util FILENAME lack-util) (NAME local-time FILENAME local-time) (NAME md5 FILENAME md5) (NAME named-readtables FILENAME named-readtables) - (NAME nibbles FILENAME nibbles) (NAME proc-parse FILENAME proc-parse) - (NAME quri FILENAME quri) (NAME rfc2388 FILENAME rfc2388) - (NAME rove FILENAME rove) (NAME smart-buffer FILENAME smart-buffer) + (NAME proc-parse FILENAME proc-parse) (NAME quri FILENAME quri) + (NAME rfc2388 FILENAME rfc2388) (NAME rove FILENAME rove) + (NAME smart-buffer FILENAME smart-buffer) (NAME split-sequence FILENAME split-sequence) (NAME static-vectors FILENAME static-vectors) (NAME trivial-backtrace FILENAME trivial-backtrace) @@ -64,9 +64,9 @@ rec { clack-socket dexador dissect fast-http fast-io flexi-streams http-body hunchentoot ironclad jonathan lack lack-component lack-middleware-backtrace lack-util local-time md5 named-readtables - nibbles proc-parse quri rfc2388 rove smart-buffer split-sequence - static-vectors trivial-backtrace trivial-features trivial-garbage - trivial-gray-streams trivial-mimes trivial-types usocket xsubseq) + proc-parse quri rfc2388 rove smart-buffer split-sequence static-vectors + trivial-backtrace trivial-features trivial-garbage trivial-gray-streams + trivial-mimes trivial-types usocket xsubseq) VERSION clack-20191007-git SIBLINGS (clack-handler-fcgi clack-handler-hunchentoot clack-handler-toot clack-handler-wookie clack-socket clack-v1-compat clack diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clack-v1-compat.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clack-v1-compat.nix index fbc02f04da9..d52c21e7c00 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clack-v1-compat.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clack-v1-compat.nix @@ -5,7 +5,7 @@ rec { description = ''System lacks description''; - deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."chipz" args."chunga" args."circular-streams" args."cl_plus_ssl" args."cl-annot" args."cl-base64" args."cl-cookie" args."cl-fad" args."cl-ppcre" args."cl-reexport" args."cl-syntax" args."cl-syntax-annot" args."cl-utilities" args."clack" args."clack-handler-hunchentoot" args."clack-socket" args."clack-test" args."dexador" args."dissect" args."fast-http" args."fast-io" args."flexi-streams" args."http-body" args."hunchentoot" args."ironclad" args."jonathan" args."lack" args."lack-component" args."lack-middleware-backtrace" args."lack-util" args."local-time" args."marshal" args."md5" args."named-readtables" args."nibbles" args."proc-parse" args."quri" args."rfc2388" args."rove" args."smart-buffer" args."split-sequence" args."static-vectors" args."trivial-backtrace" args."trivial-features" args."trivial-garbage" args."trivial-gray-streams" args."trivial-mimes" args."trivial-types" args."uiop" args."usocket" args."xsubseq" ]; + deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."chipz" args."chunga" args."circular-streams" args."cl_plus_ssl" args."cl-annot" args."cl-base64" args."cl-cookie" args."cl-fad" args."cl-ppcre" args."cl-reexport" args."cl-syntax" args."cl-syntax-annot" args."cl-utilities" args."clack" args."clack-handler-hunchentoot" args."clack-socket" args."clack-test" args."dexador" args."dissect" args."fast-http" args."fast-io" args."flexi-streams" args."http-body" args."hunchentoot" args."ironclad" args."jonathan" args."lack" args."lack-component" args."lack-middleware-backtrace" args."lack-util" args."local-time" args."marshal" args."md5" args."named-readtables" args."proc-parse" args."quri" args."rfc2388" args."rove" args."smart-buffer" args."split-sequence" args."static-vectors" args."trivial-backtrace" args."trivial-features" args."trivial-garbage" args."trivial-gray-streams" args."trivial-mimes" args."trivial-types" args."uiop" args."usocket" args."xsubseq" ]; src = fetchurl { url = ''http://beta.quicklisp.org/archive/clack/2019-10-07/clack-20191007-git.tgz''; @@ -49,9 +49,9 @@ rec { (NAME lack-util FILENAME lack-util) (NAME local-time FILENAME local-time) (NAME marshal FILENAME marshal) (NAME md5 FILENAME md5) (NAME named-readtables FILENAME named-readtables) - (NAME nibbles FILENAME nibbles) (NAME proc-parse FILENAME proc-parse) - (NAME quri FILENAME quri) (NAME rfc2388 FILENAME rfc2388) - (NAME rove FILENAME rove) (NAME smart-buffer FILENAME smart-buffer) + (NAME proc-parse FILENAME proc-parse) (NAME quri FILENAME quri) + (NAME rfc2388 FILENAME rfc2388) (NAME rove FILENAME rove) + (NAME smart-buffer FILENAME smart-buffer) (NAME split-sequence FILENAME split-sequence) (NAME static-vectors FILENAME static-vectors) (NAME trivial-backtrace FILENAME trivial-backtrace) @@ -68,7 +68,7 @@ rec { clack-handler-hunchentoot clack-socket clack-test dexador dissect fast-http fast-io flexi-streams http-body hunchentoot ironclad jonathan lack lack-component lack-middleware-backtrace lack-util local-time marshal - md5 named-readtables nibbles proc-parse quri rfc2388 rove smart-buffer + md5 named-readtables proc-parse quri rfc2388 rove smart-buffer split-sequence static-vectors trivial-backtrace trivial-features trivial-garbage trivial-gray-streams trivial-mimes trivial-types uiop usocket xsubseq) diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clack.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clack.nix index 327dc5ace6e..1453232cb66 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clack.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clack.nix @@ -5,7 +5,7 @@ rec { description = ''Web application environment for Common Lisp''; - deps = [ args."alexandria" args."bordeaux-threads" args."ironclad" args."lack" args."lack-component" args."lack-middleware-backtrace" args."lack-util" args."nibbles" args."uiop" ]; + deps = [ args."alexandria" args."bordeaux-threads" args."ironclad" args."lack" args."lack-component" args."lack-middleware-backtrace" args."lack-util" args."uiop" ]; src = fetchurl { url = ''http://beta.quicklisp.org/archive/clack/2019-10-07/clack-20191007-git.tgz''; @@ -26,11 +26,10 @@ rec { (NAME ironclad FILENAME ironclad) (NAME lack FILENAME lack) (NAME lack-component FILENAME lack-component) (NAME lack-middleware-backtrace FILENAME lack-middleware-backtrace) - (NAME lack-util FILENAME lack-util) (NAME nibbles FILENAME nibbles) - (NAME uiop FILENAME uiop)) + (NAME lack-util FILENAME lack-util) (NAME uiop FILENAME uiop)) DEPENDENCIES (alexandria bordeaux-threads ironclad lack lack-component - lack-middleware-backtrace lack-util nibbles uiop) + lack-middleware-backtrace lack-util uiop) VERSION 20191007-git SIBLINGS (clack-handler-fcgi clack-handler-hunchentoot clack-handler-toot clack-handler-wookie clack-socket clack-test clack-v1-compat diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/closer-mop.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/closer-mop.nix index 26a8f1b5341..a942542e336 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/closer-mop.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/closer-mop.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''closer-mop''; - version = ''20191227-git''; + version = ''20201016-git''; description = ''Closer to MOP is a compatibility layer that rectifies many of the absent or incorrect CLOS MOP features across a broad range of Common Lisp implementations.''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/closer-mop/2019-12-27/closer-mop-20191227-git.tgz''; - sha256 = ''12qkaadpbj946ln17xp5cjahd9jkbwv9j51rvk3q9kqmsm0r1r9l''; + url = ''http://beta.quicklisp.org/archive/closer-mop/2020-10-16/closer-mop-20201016-git.tgz''; + sha256 = ''1fccvxzrrfdiwjx9cdia7idp8xym1y86bf7zcyxvmpkdcvgdsdcd''; }; packageName = "closer-mop"; @@ -19,7 +19,7 @@ rec { } /* (SYSTEM closer-mop DESCRIPTION Closer to MOP is a compatibility layer that rectifies many of the absent or incorrect CLOS MOP features across a broad range of Common Lisp implementations. - SHA256 12qkaadpbj946ln17xp5cjahd9jkbwv9j51rvk3q9kqmsm0r1r9l URL - http://beta.quicklisp.org/archive/closer-mop/2019-12-27/closer-mop-20191227-git.tgz - MD5 67dda2ff56690bb8eec6131983605031 NAME closer-mop FILENAME closer-mop - DEPS NIL DEPENDENCIES NIL VERSION 20191227-git SIBLINGS NIL PARASITES NIL) */ + SHA256 1fccvxzrrfdiwjx9cdia7idp8xym1y86bf7zcyxvmpkdcvgdsdcd URL + http://beta.quicklisp.org/archive/closer-mop/2020-10-16/closer-mop-20201016-git.tgz + MD5 aca5b5432a782075906efd5aa948b748 NAME closer-mop FILENAME closer-mop + DEPS NIL DEPENDENCIES NIL VERSION 20201016-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-postgresql-socket.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-postgresql-socket.nix index 9f4abb8e475..cbe9caf93ce 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-postgresql-socket.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-postgresql-socket.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''clsql-postgresql-socket''; - version = ''clsql-20160208-git''; + version = ''clsql-20201016-git''; description = ''Common Lisp SQL PostgreSQL Socket Driver''; deps = [ args."clsql" args."md5" args."uffi" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/clsql/2016-02-08/clsql-20160208-git.tgz''; - sha256 = ''0hc97rlfpanp6c1ziis47mrq2fgxbk0h51bhczn8k9xin2qbhhgn''; + url = ''http://beta.quicklisp.org/archive/clsql/2020-10-16/clsql-20201016-git.tgz''; + sha256 = ''0wzjxcm7df4fipvj5qsqlllai92hkzd4cvlaghvaikcah9r63hv8''; }; packageName = "clsql-postgresql-socket"; @@ -19,13 +19,13 @@ rec { } /* (SYSTEM clsql-postgresql-socket DESCRIPTION Common Lisp SQL PostgreSQL Socket Driver SHA256 - 0hc97rlfpanp6c1ziis47mrq2fgxbk0h51bhczn8k9xin2qbhhgn URL - http://beta.quicklisp.org/archive/clsql/2016-02-08/clsql-20160208-git.tgz - MD5 d1da7688361337a7de4fe7452c225a06 NAME clsql-postgresql-socket FILENAME + 0wzjxcm7df4fipvj5qsqlllai92hkzd4cvlaghvaikcah9r63hv8 URL + http://beta.quicklisp.org/archive/clsql/2020-10-16/clsql-20201016-git.tgz + MD5 bfa0842f9875113aed8e82eca58dab9e NAME clsql-postgresql-socket FILENAME clsql-postgresql-socket DEPS ((NAME clsql FILENAME clsql) (NAME md5 FILENAME md5) (NAME uffi FILENAME uffi)) - DEPENDENCIES (clsql md5 uffi) VERSION clsql-20160208-git SIBLINGS + DEPENDENCIES (clsql md5 uffi) VERSION clsql-20201016-git SIBLINGS (clsql-aodbc clsql-cffi clsql-mysql clsql-odbc clsql-postgresql-socket3 clsql-postgresql clsql-sqlite clsql-sqlite3 clsql-tests clsql-uffi clsql) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-postgresql.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-postgresql.nix index add3a15d27c..9e449d55553 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-postgresql.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-postgresql.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''clsql-postgresql''; - version = ''clsql-20160208-git''; + version = ''clsql-20201016-git''; description = ''Common Lisp PostgreSQL API Driver''; deps = [ args."clsql" args."clsql-uffi" args."uffi" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/clsql/2016-02-08/clsql-20160208-git.tgz''; - sha256 = ''0hc97rlfpanp6c1ziis47mrq2fgxbk0h51bhczn8k9xin2qbhhgn''; + url = ''http://beta.quicklisp.org/archive/clsql/2020-10-16/clsql-20201016-git.tgz''; + sha256 = ''0wzjxcm7df4fipvj5qsqlllai92hkzd4cvlaghvaikcah9r63hv8''; }; packageName = "clsql-postgresql"; @@ -18,13 +18,13 @@ rec { overrides = x: x; } /* (SYSTEM clsql-postgresql DESCRIPTION Common Lisp PostgreSQL API Driver - SHA256 0hc97rlfpanp6c1ziis47mrq2fgxbk0h51bhczn8k9xin2qbhhgn URL - http://beta.quicklisp.org/archive/clsql/2016-02-08/clsql-20160208-git.tgz - MD5 d1da7688361337a7de4fe7452c225a06 NAME clsql-postgresql FILENAME + SHA256 0wzjxcm7df4fipvj5qsqlllai92hkzd4cvlaghvaikcah9r63hv8 URL + http://beta.quicklisp.org/archive/clsql/2020-10-16/clsql-20201016-git.tgz + MD5 bfa0842f9875113aed8e82eca58dab9e NAME clsql-postgresql FILENAME clsql-postgresql DEPS ((NAME clsql FILENAME clsql) (NAME clsql-uffi FILENAME clsql-uffi) (NAME uffi FILENAME uffi)) - DEPENDENCIES (clsql clsql-uffi uffi) VERSION clsql-20160208-git SIBLINGS + DEPENDENCIES (clsql clsql-uffi uffi) VERSION clsql-20201016-git SIBLINGS (clsql-aodbc clsql-cffi clsql-mysql clsql-odbc clsql-postgresql-socket clsql-postgresql-socket3 clsql-sqlite clsql-sqlite3 clsql-tests clsql-uffi clsql) diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-sqlite3.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-sqlite3.nix index 653adb3d12b..1756cea10bb 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-sqlite3.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-sqlite3.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''clsql-sqlite3''; - version = ''clsql-20160208-git''; + version = ''clsql-20201016-git''; description = ''Common Lisp Sqlite3 Driver''; deps = [ args."clsql" args."clsql-uffi" args."uffi" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/clsql/2016-02-08/clsql-20160208-git.tgz''; - sha256 = ''0hc97rlfpanp6c1ziis47mrq2fgxbk0h51bhczn8k9xin2qbhhgn''; + url = ''http://beta.quicklisp.org/archive/clsql/2020-10-16/clsql-20201016-git.tgz''; + sha256 = ''0wzjxcm7df4fipvj5qsqlllai92hkzd4cvlaghvaikcah9r63hv8''; }; packageName = "clsql-sqlite3"; @@ -18,13 +18,13 @@ rec { overrides = x: x; } /* (SYSTEM clsql-sqlite3 DESCRIPTION Common Lisp Sqlite3 Driver SHA256 - 0hc97rlfpanp6c1ziis47mrq2fgxbk0h51bhczn8k9xin2qbhhgn URL - http://beta.quicklisp.org/archive/clsql/2016-02-08/clsql-20160208-git.tgz - MD5 d1da7688361337a7de4fe7452c225a06 NAME clsql-sqlite3 FILENAME + 0wzjxcm7df4fipvj5qsqlllai92hkzd4cvlaghvaikcah9r63hv8 URL + http://beta.quicklisp.org/archive/clsql/2020-10-16/clsql-20201016-git.tgz + MD5 bfa0842f9875113aed8e82eca58dab9e NAME clsql-sqlite3 FILENAME clsql-sqlite3 DEPS ((NAME clsql FILENAME clsql) (NAME clsql-uffi FILENAME clsql-uffi) (NAME uffi FILENAME uffi)) - DEPENDENCIES (clsql clsql-uffi uffi) VERSION clsql-20160208-git SIBLINGS + DEPENDENCIES (clsql clsql-uffi uffi) VERSION clsql-20201016-git SIBLINGS (clsql-aodbc clsql-cffi clsql-mysql clsql-odbc clsql-postgresql-socket clsql-postgresql-socket3 clsql-postgresql clsql-sqlite clsql-tests clsql-uffi clsql) diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-uffi.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-uffi.nix index 8243a337585..41399891206 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-uffi.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql-uffi.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''clsql-uffi''; - version = ''clsql-20160208-git''; + version = ''clsql-20201016-git''; description = ''Common UFFI Helper functions for Common Lisp SQL Interface Library''; deps = [ args."clsql" args."uffi" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/clsql/2016-02-08/clsql-20160208-git.tgz''; - sha256 = ''0hc97rlfpanp6c1ziis47mrq2fgxbk0h51bhczn8k9xin2qbhhgn''; + url = ''http://beta.quicklisp.org/archive/clsql/2020-10-16/clsql-20201016-git.tgz''; + sha256 = ''0wzjxcm7df4fipvj5qsqlllai92hkzd4cvlaghvaikcah9r63hv8''; }; packageName = "clsql-uffi"; @@ -19,11 +19,11 @@ rec { } /* (SYSTEM clsql-uffi DESCRIPTION Common UFFI Helper functions for Common Lisp SQL Interface Library SHA256 - 0hc97rlfpanp6c1ziis47mrq2fgxbk0h51bhczn8k9xin2qbhhgn URL - http://beta.quicklisp.org/archive/clsql/2016-02-08/clsql-20160208-git.tgz - MD5 d1da7688361337a7de4fe7452c225a06 NAME clsql-uffi FILENAME clsql-uffi + 0wzjxcm7df4fipvj5qsqlllai92hkzd4cvlaghvaikcah9r63hv8 URL + http://beta.quicklisp.org/archive/clsql/2020-10-16/clsql-20201016-git.tgz + MD5 bfa0842f9875113aed8e82eca58dab9e NAME clsql-uffi FILENAME clsql-uffi DEPS ((NAME clsql FILENAME clsql) (NAME uffi FILENAME uffi)) DEPENDENCIES - (clsql uffi) VERSION clsql-20160208-git SIBLINGS + (clsql uffi) VERSION clsql-20201016-git SIBLINGS (clsql-aodbc clsql-cffi clsql-mysql clsql-odbc clsql-postgresql-socket clsql-postgresql-socket3 clsql-postgresql clsql-sqlite clsql-sqlite3 clsql-tests clsql) diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql.nix index 74b8442c0c9..6a202f7efa2 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clsql.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''clsql''; - version = ''20160208-git''; + version = ''20201016-git''; description = ''Common Lisp SQL Interface library''; deps = [ args."uffi" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/clsql/2016-02-08/clsql-20160208-git.tgz''; - sha256 = ''0hc97rlfpanp6c1ziis47mrq2fgxbk0h51bhczn8k9xin2qbhhgn''; + url = ''http://beta.quicklisp.org/archive/clsql/2020-10-16/clsql-20201016-git.tgz''; + sha256 = ''0wzjxcm7df4fipvj5qsqlllai92hkzd4cvlaghvaikcah9r63hv8''; }; packageName = "clsql"; @@ -18,10 +18,10 @@ rec { overrides = x: x; } /* (SYSTEM clsql DESCRIPTION Common Lisp SQL Interface library SHA256 - 0hc97rlfpanp6c1ziis47mrq2fgxbk0h51bhczn8k9xin2qbhhgn URL - http://beta.quicklisp.org/archive/clsql/2016-02-08/clsql-20160208-git.tgz - MD5 d1da7688361337a7de4fe7452c225a06 NAME clsql FILENAME clsql DEPS - ((NAME uffi FILENAME uffi)) DEPENDENCIES (uffi) VERSION 20160208-git + 0wzjxcm7df4fipvj5qsqlllai92hkzd4cvlaghvaikcah9r63hv8 URL + http://beta.quicklisp.org/archive/clsql/2020-10-16/clsql-20201016-git.tgz + MD5 bfa0842f9875113aed8e82eca58dab9e NAME clsql FILENAME clsql DEPS + ((NAME uffi FILENAME uffi)) DEPENDENCIES (uffi) VERSION 20201016-git SIBLINGS (clsql-aodbc clsql-cffi clsql-mysql clsql-odbc clsql-postgresql-socket clsql-postgresql-socket3 clsql-postgresql clsql-sqlite clsql-sqlite3 diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clump-2-3-tree.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clump-2-3-tree.nix new file mode 100644 index 00000000000..10ab18a8caf --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clump-2-3-tree.nix @@ -0,0 +1,26 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''clump-2-3-tree''; + version = ''clump-20160825-git''; + + description = ''System lacks description''; + + deps = [ args."acclimation" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/clump/2016-08-25/clump-20160825-git.tgz''; + sha256 = ''1mngxmwklpi52inihkp4akzdi7y32609spfi70yamwgzc1wijbrl''; + }; + + packageName = "clump-2-3-tree"; + + asdFilesToKeep = ["clump-2-3-tree.asd"]; + overrides = x: x; +} +/* (SYSTEM clump-2-3-tree DESCRIPTION System lacks description SHA256 + 1mngxmwklpi52inihkp4akzdi7y32609spfi70yamwgzc1wijbrl URL + http://beta.quicklisp.org/archive/clump/2016-08-25/clump-20160825-git.tgz + MD5 5132d2800138d435ef69f7e68b025c8f NAME clump-2-3-tree FILENAME + clump-2-3-tree DEPS ((NAME acclimation FILENAME acclimation)) DEPENDENCIES + (acclimation) VERSION clump-20160825-git SIBLINGS + (clump-binary-tree clump-test clump) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clump-binary-tree.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clump-binary-tree.nix new file mode 100644 index 00000000000..ad284471540 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clump-binary-tree.nix @@ -0,0 +1,26 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''clump-binary-tree''; + version = ''clump-20160825-git''; + + description = ''System lacks description''; + + deps = [ args."acclimation" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/clump/2016-08-25/clump-20160825-git.tgz''; + sha256 = ''1mngxmwklpi52inihkp4akzdi7y32609spfi70yamwgzc1wijbrl''; + }; + + packageName = "clump-binary-tree"; + + asdFilesToKeep = ["clump-binary-tree.asd"]; + overrides = x: x; +} +/* (SYSTEM clump-binary-tree DESCRIPTION System lacks description SHA256 + 1mngxmwklpi52inihkp4akzdi7y32609spfi70yamwgzc1wijbrl URL + http://beta.quicklisp.org/archive/clump/2016-08-25/clump-20160825-git.tgz + MD5 5132d2800138d435ef69f7e68b025c8f NAME clump-binary-tree FILENAME + clump-binary-tree DEPS ((NAME acclimation FILENAME acclimation)) + DEPENDENCIES (acclimation) VERSION clump-20160825-git SIBLINGS + (clump-2-3-tree clump-test clump) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clump.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clump.nix new file mode 100644 index 00000000000..476cacb6f32 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clump.nix @@ -0,0 +1,29 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''clump''; + version = ''20160825-git''; + + description = ''Library for operations on different kinds of trees''; + + deps = [ args."acclimation" args."clump-2-3-tree" args."clump-binary-tree" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/clump/2016-08-25/clump-20160825-git.tgz''; + sha256 = ''1mngxmwklpi52inihkp4akzdi7y32609spfi70yamwgzc1wijbrl''; + }; + + packageName = "clump"; + + asdFilesToKeep = ["clump.asd"]; + overrides = x: x; +} +/* (SYSTEM clump DESCRIPTION Library for operations on different kinds of trees + SHA256 1mngxmwklpi52inihkp4akzdi7y32609spfi70yamwgzc1wijbrl URL + http://beta.quicklisp.org/archive/clump/2016-08-25/clump-20160825-git.tgz + MD5 5132d2800138d435ef69f7e68b025c8f NAME clump FILENAME clump DEPS + ((NAME acclimation FILENAME acclimation) + (NAME clump-2-3-tree FILENAME clump-2-3-tree) + (NAME clump-binary-tree FILENAME clump-binary-tree)) + DEPENDENCIES (acclimation clump-2-3-tree clump-binary-tree) VERSION + 20160825-git SIBLINGS (clump-2-3-tree clump-binary-tree clump-test) + PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clunit.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clunit.nix new file mode 100644 index 00000000000..7ab00c03446 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clunit.nix @@ -0,0 +1,24 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''clunit''; + version = ''20171019-git''; + + description = ''CLUnit is a Common Lisp unit testing framework.''; + + deps = [ ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/clunit/2017-10-19/clunit-20171019-git.tgz''; + sha256 = ''1rapyh0fbjnksj8j3y6imzya1kw80882w18j0fv9iq1hlp718zs5''; + }; + + packageName = "clunit"; + + asdFilesToKeep = ["clunit.asd"]; + overrides = x: x; +} +/* (SYSTEM clunit DESCRIPTION CLUnit is a Common Lisp unit testing framework. + SHA256 1rapyh0fbjnksj8j3y6imzya1kw80882w18j0fv9iq1hlp718zs5 URL + http://beta.quicklisp.org/archive/clunit/2017-10-19/clunit-20171019-git.tgz + MD5 389017f2f05a6287078ddacd0471817e NAME clunit FILENAME clunit DEPS NIL + DEPENDENCIES NIL VERSION 20171019-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clunit2.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clunit2.nix new file mode 100644 index 00000000000..6a143073b5c --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clunit2.nix @@ -0,0 +1,24 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''clunit2''; + version = ''20201016-git''; + + description = ''CLUnit is a Common Lisp unit testing framework.''; + + deps = [ ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/clunit2/2020-10-16/clunit2-20201016-git.tgz''; + sha256 = ''1mj3c125drq9a3pxrh0r8q3gqgq68yk7qi0zbqh4mkpavl1aspdp''; + }; + + packageName = "clunit2"; + + asdFilesToKeep = ["clunit2.asd"]; + overrides = x: x; +} +/* (SYSTEM clunit2 DESCRIPTION CLUnit is a Common Lisp unit testing framework. + SHA256 1mj3c125drq9a3pxrh0r8q3gqgq68yk7qi0zbqh4mkpavl1aspdp URL + http://beta.quicklisp.org/archive/clunit2/2020-10-16/clunit2-20201016-git.tgz + MD5 7f977b33550c689d1d2cf2c8a4610896 NAME clunit2 FILENAME clunit2 DEPS NIL + DEPENDENCIES NIL VERSION 20201016-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clx-truetype.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clx-truetype.nix deleted file mode 100644 index 303d43a964e..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clx-truetype.nix +++ /dev/null @@ -1,39 +0,0 @@ -args @ { fetchurl, ... }: -rec { - baseName = ''clx-truetype''; - version = ''20160825-git''; - - parasites = [ "clx-truetype-test" ]; - - description = ''clx-truetype is pure common lisp solution for antialiased TrueType font rendering using CLX and XRender extension.''; - - deps = [ args."alexandria" args."bordeaux-threads" args."cl-aa" args."cl-fad" args."cl-paths" args."cl-paths-ttf" args."cl-store" args."cl-vectors" args."clx" args."trivial-features" args."zpb-ttf" ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/clx-truetype/2016-08-25/clx-truetype-20160825-git.tgz''; - sha256 = ''0ndy067rg9w6636gxwlpnw7f3ck9nrnjb03444pprik9r3c9in67''; - }; - - packageName = "clx-truetype"; - - asdFilesToKeep = ["clx-truetype.asd"]; - overrides = x: x; -} -/* (SYSTEM clx-truetype DESCRIPTION - clx-truetype is pure common lisp solution for antialiased TrueType font rendering using CLX and XRender extension. - SHA256 0ndy067rg9w6636gxwlpnw7f3ck9nrnjb03444pprik9r3c9in67 URL - http://beta.quicklisp.org/archive/clx-truetype/2016-08-25/clx-truetype-20160825-git.tgz - MD5 7c9dedb21d52dedf727de741ac6d9c60 NAME clx-truetype FILENAME - clx-truetype DEPS - ((NAME alexandria FILENAME alexandria) - (NAME bordeaux-threads FILENAME bordeaux-threads) - (NAME cl-aa FILENAME cl-aa) (NAME cl-fad FILENAME cl-fad) - (NAME cl-paths FILENAME cl-paths) - (NAME cl-paths-ttf FILENAME cl-paths-ttf) - (NAME cl-store FILENAME cl-store) (NAME cl-vectors FILENAME cl-vectors) - (NAME clx FILENAME clx) (NAME trivial-features FILENAME trivial-features) - (NAME zpb-ttf FILENAME zpb-ttf)) - DEPENDENCIES - (alexandria bordeaux-threads cl-aa cl-fad cl-paths cl-paths-ttf cl-store - cl-vectors clx trivial-features zpb-ttf) - VERSION 20160825-git SIBLINGS NIL PARASITES (clx-truetype-test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clx.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clx.nix index 8f721b60f48..856d5411557 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/clx.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/clx.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''clx''; - version = ''20191130-git''; + version = ''20200715-git''; parasites = [ "clx/test" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."fiasco" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/clx/2019-11-30/clx-20191130-git.tgz''; - sha256 = ''1fyh34hrx4p4kf5mijrmgl66hy7yjh9y43ilxck5q378291yk8dj''; + url = ''http://beta.quicklisp.org/archive/clx/2020-07-15/clx-20200715-git.tgz''; + sha256 = ''1fvx6m3imvkkd0z5a3jmm2v6mkrndwsidhykrs229rqx343zg8ra''; }; packageName = "clx"; @@ -21,8 +21,8 @@ rec { } /* (SYSTEM clx DESCRIPTION An implementation of the X Window System protocol in Lisp. SHA256 - 1fyh34hrx4p4kf5mijrmgl66hy7yjh9y43ilxck5q378291yk8dj URL - http://beta.quicklisp.org/archive/clx/2019-11-30/clx-20191130-git.tgz MD5 - 61e86a60727732df62c9fa383535fc89 NAME clx FILENAME clx DEPS - ((NAME fiasco FILENAME fiasco)) DEPENDENCIES (fiasco) VERSION 20191130-git + 1fvx6m3imvkkd0z5a3jmm2v6mkrndwsidhykrs229rqx343zg8ra URL + http://beta.quicklisp.org/archive/clx/2020-07-15/clx-20200715-git.tgz MD5 + c0e08c88e78587bdbbbea188848dc39d NAME clx FILENAME clx DEPS + ((NAME fiasco FILENAME fiasco)) DEPENDENCIES (fiasco) VERSION 20200715-git SIBLINGS NIL PARASITES (clx/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/colorize.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/colorize.nix new file mode 100644 index 00000000000..9084d6a309b --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/colorize.nix @@ -0,0 +1,28 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''colorize''; + version = ''20180228-git''; + + description = ''A Syntax highlighting library''; + + deps = [ args."alexandria" args."html-encode" args."split-sequence" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/colorize/2018-02-28/colorize-20180228-git.tgz''; + sha256 = ''1g0xbryavsf17zy9iy0sbqsb4lyva04h93sbaj3iwv12w50fwz2h''; + }; + + packageName = "colorize"; + + asdFilesToKeep = ["colorize.asd"]; + overrides = x: x; +} +/* (SYSTEM colorize DESCRIPTION A Syntax highlighting library SHA256 + 1g0xbryavsf17zy9iy0sbqsb4lyva04h93sbaj3iwv12w50fwz2h URL + http://beta.quicklisp.org/archive/colorize/2018-02-28/colorize-20180228-git.tgz + MD5 1bc08c8f76b747e4d254669a205dc611 NAME colorize FILENAME colorize DEPS + ((NAME alexandria FILENAME alexandria) + (NAME html-encode FILENAME html-encode) + (NAME split-sequence FILENAME split-sequence)) + DEPENDENCIES (alexandria html-encode split-sequence) VERSION 20180228-git + SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/command-line-arguments.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/command-line-arguments.nix index fdedf9735eb..ed4e48cd83b 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/command-line-arguments.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/command-line-arguments.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''command-line-arguments''; - version = ''20191227-git''; + version = ''20200325-git''; description = ''small library to deal with command-line arguments''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/command-line-arguments/2019-12-27/command-line-arguments-20191227-git.tgz''; - sha256 = ''1846v22mdi8qfavp9wcp7spic6gcmlrbd6g3l0f3crssqza0asgf''; + url = ''http://beta.quicklisp.org/archive/command-line-arguments/2020-03-25/command-line-arguments-20200325-git.tgz''; + sha256 = ''0ny0c0aw3mfjpmf31pnd9zfnylqh8ji2yi636w1f352c13z2w5sz''; }; packageName = "command-line-arguments"; @@ -19,8 +19,8 @@ rec { } /* (SYSTEM command-line-arguments DESCRIPTION small library to deal with command-line arguments SHA256 - 1846v22mdi8qfavp9wcp7spic6gcmlrbd6g3l0f3crssqza0asgf URL - http://beta.quicklisp.org/archive/command-line-arguments/2019-12-27/command-line-arguments-20191227-git.tgz - MD5 3ed82e1536b55fc0b7abc79626631aab NAME command-line-arguments FILENAME - command-line-arguments DEPS NIL DEPENDENCIES NIL VERSION 20191227-git + 0ny0c0aw3mfjpmf31pnd9zfnylqh8ji2yi636w1f352c13z2w5sz URL + http://beta.quicklisp.org/archive/command-line-arguments/2020-03-25/command-line-arguments-20200325-git.tgz + MD5 5a860667bc3feef212028b90c9e026f8 NAME command-line-arguments FILENAME + command-line-arguments DEPS NIL DEPENDENCIES NIL VERSION 20200325-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cxml-stp.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cxml-stp.nix index ebae32962f1..2816b451087 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cxml-stp.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cxml-stp.nix @@ -1,17 +1,17 @@ args @ { fetchurl, ... }: rec { baseName = ''cxml-stp''; - version = ''20190521-git''; + version = ''20200325-git''; parasites = [ "cxml-stp/test" ]; description = ''System lacks description''; - deps = [ args."alexandria" args."babel" args."cl-ppcre" args."closure-common" args."cxml" args."parse-number" args."puri" args."rt" args."trivial-features" args."trivial-gray-streams" args."xpath" args."xpath_slash_test" args."yacc" ]; + deps = [ args."alexandria" args."babel" args."cl-ppcre" args."closure-common" args."cxml" args."cxml_slash_test" args."parse-number" args."puri" args."rt" args."trivial-features" args."trivial-gray-streams" args."xpath" args."xpath_slash_test" args."yacc" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cxml-stp/2019-05-21/cxml-stp-20190521-git.tgz''; - sha256 = ''1lgqw1w65yra0lyy41finj19y1z6yqkvkyzgvagb7s54cnzafz21''; + url = ''http://beta.quicklisp.org/archive/cxml-stp/2020-03-25/cxml-stp-20200325-git.tgz''; + sha256 = ''1y26bksmysvxifqx4lslpbsdvmcqkf7di36a3yyqnjgrb5r0jv1n''; }; packageName = "cxml-stp"; @@ -20,18 +20,19 @@ rec { overrides = x: x; } /* (SYSTEM cxml-stp DESCRIPTION System lacks description SHA256 - 1lgqw1w65yra0lyy41finj19y1z6yqkvkyzgvagb7s54cnzafz21 URL - http://beta.quicklisp.org/archive/cxml-stp/2019-05-21/cxml-stp-20190521-git.tgz - MD5 9e0c99bd2b547e07b23305a5ff72aff6 NAME cxml-stp FILENAME cxml-stp DEPS + 1y26bksmysvxifqx4lslpbsdvmcqkf7di36a3yyqnjgrb5r0jv1n URL + http://beta.quicklisp.org/archive/cxml-stp/2020-03-25/cxml-stp-20200325-git.tgz + MD5 5622b4aae55e448473f1ba14fa3a5f4c NAME cxml-stp FILENAME cxml-stp DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME cl-ppcre FILENAME cl-ppcre) (NAME closure-common FILENAME closure-common) (NAME cxml FILENAME cxml) + (NAME cxml/test FILENAME cxml_slash_test) (NAME parse-number FILENAME parse-number) (NAME puri FILENAME puri) (NAME rt FILENAME rt) (NAME trivial-features FILENAME trivial-features) (NAME trivial-gray-streams FILENAME trivial-gray-streams) (NAME xpath FILENAME xpath) (NAME xpath/test FILENAME xpath_slash_test) (NAME yacc FILENAME yacc)) DEPENDENCIES - (alexandria babel cl-ppcre closure-common cxml parse-number puri rt - trivial-features trivial-gray-streams xpath xpath/test yacc) - VERSION 20190521-git SIBLINGS NIL PARASITES (cxml-stp/test)) */ + (alexandria babel cl-ppcre closure-common cxml cxml/test parse-number puri + rt trivial-features trivial-gray-streams xpath xpath/test yacc) + VERSION 20200325-git SIBLINGS NIL PARASITES (cxml-stp/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cxml.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cxml.nix index 68a019fa027..8f5e05048c6 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/cxml.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/cxml.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''cxml''; - version = ''20181018-git''; + version = ''20200610-git''; parasites = [ "cxml/dom" "cxml/klacks" "cxml/test" "cxml/xml" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."alexandria" args."babel" args."closure-common" args."puri" args."trivial-features" args."trivial-gray-streams" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cxml/2018-10-18/cxml-20181018-git.tgz''; - sha256 = ''1s7nfq5zfpxsrayhn0gg3x8fj47mld00qm3cpv5whdqj3wd3krmn''; + url = ''http://beta.quicklisp.org/archive/cxml/2020-06-10/cxml-20200610-git.tgz''; + sha256 = ''0545rh4mfxqx2yn9b48s0hzd5w80kars7hpykbg0lgf7ys5218mq''; }; packageName = "cxml"; @@ -20,9 +20,9 @@ rec { overrides = x: x; } /* (SYSTEM cxml DESCRIPTION Closure XML - a Common Lisp XML parser SHA256 - 1s7nfq5zfpxsrayhn0gg3x8fj47mld00qm3cpv5whdqj3wd3krmn URL - http://beta.quicklisp.org/archive/cxml/2018-10-18/cxml-20181018-git.tgz MD5 - 33c5546de7099d65fdb2fbb716fd3de8 NAME cxml FILENAME cxml DEPS + 0545rh4mfxqx2yn9b48s0hzd5w80kars7hpykbg0lgf7ys5218mq URL + http://beta.quicklisp.org/archive/cxml/2020-06-10/cxml-20200610-git.tgz MD5 + 0b6f34edb79f7b63cc5855f18d0d66f0 NAME cxml FILENAME cxml DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME closure-common FILENAME closure-common) (NAME puri FILENAME puri) (NAME trivial-features FILENAME trivial-features) @@ -30,5 +30,5 @@ rec { DEPENDENCIES (alexandria babel closure-common puri trivial-features trivial-gray-streams) - VERSION 20181018-git SIBLINGS (cxml-dom cxml-klacks cxml-test) PARASITES + VERSION 20200610-git SIBLINGS (cxml-dom cxml-klacks cxml-test) PARASITES (cxml/dom cxml/klacks cxml/test cxml/xml)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/db3.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/db3.nix deleted file mode 100644 index 1f0b4f9f71b..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/db3.nix +++ /dev/null @@ -1,24 +0,0 @@ -{ fetchurl, ... }: -{ - baseName = ''db3''; - version = ''cl-20150302-git''; - - description = ''DB3 file reader''; - - deps = [ ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-db3/2015-03-02/cl-db3-20150302-git.tgz''; - sha256 = ''0mwdpb7cdvxdcbyg3ags6xzwhblai170q3p20njs3v73s30dbzxi''; - }; - - packageName = "db3"; - - asdFilesToKeep = ["db3.asd"]; - overrides = x: x; -} -/* (SYSTEM db3 DESCRIPTION DB3 file reader SHA256 - 0mwdpb7cdvxdcbyg3ags6xzwhblai170q3p20njs3v73s30dbzxi URL - http://beta.quicklisp.org/archive/cl-db3/2015-03-02/cl-db3-20150302-git.tgz - MD5 578896a3f60f474742f240b703f8c5f5 NAME db3 FILENAME db3 DEPS NIL - DEPENDENCIES NIL VERSION cl-20150302-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbd-mysql.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbd-mysql.nix index 850e7806965..9dcea72f391 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbd-mysql.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbd-mysql.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''dbd-mysql''; - version = ''cl-dbi-20191007-git''; + version = ''cl-dbi-20200610-git''; description = ''Database driver for MySQL.''; - deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cl-annot" args."cl-mysql" args."cl-syntax" args."cl-syntax-annot" args."closer-mop" args."dbi" args."named-readtables" args."split-sequence" args."trivial-features" args."trivial-types" ]; + deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cl-mysql" args."closer-mop" args."dbi" args."split-sequence" args."trivial-features" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-dbi/2019-10-07/cl-dbi-20191007-git.tgz''; - sha256 = ''0xsg0xqq88wsx6wf8nllfd0mk356bw2qw3c5c31rfj41wz5vpx35''; + url = ''http://beta.quicklisp.org/archive/cl-dbi/2020-06-10/cl-dbi-20200610-git.tgz''; + sha256 = ''1d7hwywcqzqwmr5b42c0mmjq3v3xxd4cwb4fn5k1wd7j6pr0bkas''; }; packageName = "dbd-mysql"; @@ -18,22 +18,17 @@ rec { overrides = x: x; } /* (SYSTEM dbd-mysql DESCRIPTION Database driver for MySQL. SHA256 - 0xsg0xqq88wsx6wf8nllfd0mk356bw2qw3c5c31rfj41wz5vpx35 URL - http://beta.quicklisp.org/archive/cl-dbi/2019-10-07/cl-dbi-20191007-git.tgz - MD5 bf524c4000468d12627fa419ae412abb NAME dbd-mysql FILENAME dbd-mysql DEPS + 1d7hwywcqzqwmr5b42c0mmjq3v3xxd4cwb4fn5k1wd7j6pr0bkas URL + http://beta.quicklisp.org/archive/cl-dbi/2020-06-10/cl-dbi-20200610-git.tgz + MD5 2caeb911b23327e054986211d6bfea55 NAME dbd-mysql FILENAME dbd-mysql DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME bordeaux-threads FILENAME bordeaux-threads) - (NAME cffi FILENAME cffi) (NAME cl-annot FILENAME cl-annot) - (NAME cl-mysql FILENAME cl-mysql) (NAME cl-syntax FILENAME cl-syntax) - (NAME cl-syntax-annot FILENAME cl-syntax-annot) + (NAME cffi FILENAME cffi) (NAME cl-mysql FILENAME cl-mysql) (NAME closer-mop FILENAME closer-mop) (NAME dbi FILENAME dbi) - (NAME named-readtables FILENAME named-readtables) (NAME split-sequence FILENAME split-sequence) - (NAME trivial-features FILENAME trivial-features) - (NAME trivial-types FILENAME trivial-types)) + (NAME trivial-features FILENAME trivial-features)) DEPENDENCIES - (alexandria babel bordeaux-threads cffi cl-annot cl-mysql cl-syntax - cl-syntax-annot closer-mop dbi named-readtables split-sequence - trivial-features trivial-types) - VERSION cl-dbi-20191007-git SIBLINGS + (alexandria babel bordeaux-threads cffi cl-mysql closer-mop dbi + split-sequence trivial-features) + VERSION cl-dbi-20200610-git SIBLINGS (cl-dbi dbd-postgres dbd-sqlite3 dbi-test dbi) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbd-postgres.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbd-postgres.nix index 9dcecf8cfd6..5a7b261f724 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbd-postgres.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbd-postgres.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''dbd-postgres''; - version = ''cl-dbi-20191007-git''; + version = ''cl-dbi-20200610-git''; description = ''Database driver for PostgreSQL.''; - deps = [ args."alexandria" args."bordeaux-threads" args."cl-annot" args."cl-postgres" args."cl-syntax" args."cl-syntax-annot" args."closer-mop" args."dbi" args."md5" args."named-readtables" args."split-sequence" args."trivial-garbage" args."trivial-types" args."usocket" ]; + deps = [ args."alexandria" args."bordeaux-threads" args."cl-base64" args."cl-postgres" args."cl-ppcre" args."closer-mop" args."dbi" args."ironclad" args."md5" args."split-sequence" args."trivial-garbage" args."uax-15" args."usocket" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-dbi/2019-10-07/cl-dbi-20191007-git.tgz''; - sha256 = ''0xsg0xqq88wsx6wf8nllfd0mk356bw2qw3c5c31rfj41wz5vpx35''; + url = ''http://beta.quicklisp.org/archive/cl-dbi/2020-06-10/cl-dbi-20200610-git.tgz''; + sha256 = ''1d7hwywcqzqwmr5b42c0mmjq3v3xxd4cwb4fn5k1wd7j6pr0bkas''; }; packageName = "dbd-postgres"; @@ -18,24 +18,21 @@ rec { overrides = x: x; } /* (SYSTEM dbd-postgres DESCRIPTION Database driver for PostgreSQL. SHA256 - 0xsg0xqq88wsx6wf8nllfd0mk356bw2qw3c5c31rfj41wz5vpx35 URL - http://beta.quicklisp.org/archive/cl-dbi/2019-10-07/cl-dbi-20191007-git.tgz - MD5 bf524c4000468d12627fa419ae412abb NAME dbd-postgres FILENAME + 1d7hwywcqzqwmr5b42c0mmjq3v3xxd4cwb4fn5k1wd7j6pr0bkas URL + http://beta.quicklisp.org/archive/cl-dbi/2020-06-10/cl-dbi-20200610-git.tgz + MD5 2caeb911b23327e054986211d6bfea55 NAME dbd-postgres FILENAME dbd-postgres DEPS ((NAME alexandria FILENAME alexandria) (NAME bordeaux-threads FILENAME bordeaux-threads) - (NAME cl-annot FILENAME cl-annot) (NAME cl-postgres FILENAME cl-postgres) - (NAME cl-syntax FILENAME cl-syntax) - (NAME cl-syntax-annot FILENAME cl-syntax-annot) + (NAME cl-base64 FILENAME cl-base64) + (NAME cl-postgres FILENAME cl-postgres) (NAME cl-ppcre FILENAME cl-ppcre) (NAME closer-mop FILENAME closer-mop) (NAME dbi FILENAME dbi) - (NAME md5 FILENAME md5) (NAME named-readtables FILENAME named-readtables) + (NAME ironclad FILENAME ironclad) (NAME md5 FILENAME md5) (NAME split-sequence FILENAME split-sequence) (NAME trivial-garbage FILENAME trivial-garbage) - (NAME trivial-types FILENAME trivial-types) - (NAME usocket FILENAME usocket)) + (NAME uax-15 FILENAME uax-15) (NAME usocket FILENAME usocket)) DEPENDENCIES - (alexandria bordeaux-threads cl-annot cl-postgres cl-syntax cl-syntax-annot - closer-mop dbi md5 named-readtables split-sequence trivial-garbage - trivial-types usocket) - VERSION cl-dbi-20191007-git SIBLINGS + (alexandria bordeaux-threads cl-base64 cl-postgres cl-ppcre closer-mop dbi + ironclad md5 split-sequence trivial-garbage uax-15 usocket) + VERSION cl-dbi-20200610-git SIBLINGS (cl-dbi dbd-mysql dbd-sqlite3 dbi-test dbi) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbd-sqlite3.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbd-sqlite3.nix index d367a52c1c5..5566e807549 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbd-sqlite3.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbd-sqlite3.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''dbd-sqlite3''; - version = ''cl-dbi-20191007-git''; + version = ''cl-dbi-20200610-git''; description = ''Database driver for SQLite3.''; - deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cl-annot" args."cl-syntax" args."cl-syntax-annot" args."closer-mop" args."dbi" args."iterate" args."named-readtables" args."split-sequence" args."sqlite" args."trivial-features" args."trivial-garbage" args."trivial-types" args."uiop" ]; + deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."closer-mop" args."dbi" args."iterate" args."split-sequence" args."sqlite" args."trivial-features" args."trivial-garbage" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-dbi/2019-10-07/cl-dbi-20191007-git.tgz''; - sha256 = ''0xsg0xqq88wsx6wf8nllfd0mk356bw2qw3c5c31rfj41wz5vpx35''; + url = ''http://beta.quicklisp.org/archive/cl-dbi/2020-06-10/cl-dbi-20200610-git.tgz''; + sha256 = ''1d7hwywcqzqwmr5b42c0mmjq3v3xxd4cwb4fn5k1wd7j6pr0bkas''; }; packageName = "dbd-sqlite3"; @@ -18,26 +18,20 @@ rec { overrides = x: x; } /* (SYSTEM dbd-sqlite3 DESCRIPTION Database driver for SQLite3. SHA256 - 0xsg0xqq88wsx6wf8nllfd0mk356bw2qw3c5c31rfj41wz5vpx35 URL - http://beta.quicklisp.org/archive/cl-dbi/2019-10-07/cl-dbi-20191007-git.tgz - MD5 bf524c4000468d12627fa419ae412abb NAME dbd-sqlite3 FILENAME dbd-sqlite3 + 1d7hwywcqzqwmr5b42c0mmjq3v3xxd4cwb4fn5k1wd7j6pr0bkas URL + http://beta.quicklisp.org/archive/cl-dbi/2020-06-10/cl-dbi-20200610-git.tgz + MD5 2caeb911b23327e054986211d6bfea55 NAME dbd-sqlite3 FILENAME dbd-sqlite3 DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME bordeaux-threads FILENAME bordeaux-threads) - (NAME cffi FILENAME cffi) (NAME cl-annot FILENAME cl-annot) - (NAME cl-syntax FILENAME cl-syntax) - (NAME cl-syntax-annot FILENAME cl-syntax-annot) - (NAME closer-mop FILENAME closer-mop) (NAME dbi FILENAME dbi) - (NAME iterate FILENAME iterate) - (NAME named-readtables FILENAME named-readtables) + (NAME cffi FILENAME cffi) (NAME closer-mop FILENAME closer-mop) + (NAME dbi FILENAME dbi) (NAME iterate FILENAME iterate) (NAME split-sequence FILENAME split-sequence) (NAME sqlite FILENAME sqlite) (NAME trivial-features FILENAME trivial-features) - (NAME trivial-garbage FILENAME trivial-garbage) - (NAME trivial-types FILENAME trivial-types) (NAME uiop FILENAME uiop)) + (NAME trivial-garbage FILENAME trivial-garbage)) DEPENDENCIES - (alexandria babel bordeaux-threads cffi cl-annot cl-syntax cl-syntax-annot - closer-mop dbi iterate named-readtables split-sequence sqlite - trivial-features trivial-garbage trivial-types uiop) - VERSION cl-dbi-20191007-git SIBLINGS + (alexandria babel bordeaux-threads cffi closer-mop dbi iterate + split-sequence sqlite trivial-features trivial-garbage) + VERSION cl-dbi-20200610-git SIBLINGS (cl-dbi dbd-mysql dbd-postgres dbi-test dbi) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbi-test.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbi-test.nix new file mode 100644 index 00000000000..889afc1231d --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbi-test.nix @@ -0,0 +1,35 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''dbi-test''; + version = ''cl-dbi-20200610-git''; + + description = ''System lacks description''; + + deps = [ args."alexandria" args."bordeaux-threads" args."closer-mop" args."dbi" args."dissect" args."rove" args."split-sequence" args."trivial-gray-streams" args."trivial-types" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-dbi/2020-06-10/cl-dbi-20200610-git.tgz''; + sha256 = ''1d7hwywcqzqwmr5b42c0mmjq3v3xxd4cwb4fn5k1wd7j6pr0bkas''; + }; + + packageName = "dbi-test"; + + asdFilesToKeep = ["dbi-test.asd"]; + overrides = x: x; +} +/* (SYSTEM dbi-test DESCRIPTION System lacks description SHA256 + 1d7hwywcqzqwmr5b42c0mmjq3v3xxd4cwb4fn5k1wd7j6pr0bkas URL + http://beta.quicklisp.org/archive/cl-dbi/2020-06-10/cl-dbi-20200610-git.tgz + MD5 2caeb911b23327e054986211d6bfea55 NAME dbi-test FILENAME dbi-test DEPS + ((NAME alexandria FILENAME alexandria) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME closer-mop FILENAME closer-mop) (NAME dbi FILENAME dbi) + (NAME dissect FILENAME dissect) (NAME rove FILENAME rove) + (NAME split-sequence FILENAME split-sequence) + (NAME trivial-gray-streams FILENAME trivial-gray-streams) + (NAME trivial-types FILENAME trivial-types)) + DEPENDENCIES + (alexandria bordeaux-threads closer-mop dbi dissect rove split-sequence + trivial-gray-streams trivial-types) + VERSION cl-dbi-20200610-git SIBLINGS + (cl-dbi dbd-mysql dbd-postgres dbd-sqlite3 dbi) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbi.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbi.nix index b4d14d82741..75fab11cf44 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbi.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbi.nix @@ -1,15 +1,17 @@ args @ { fetchurl, ... }: rec { baseName = ''dbi''; - version = ''cl-20191007-git''; + version = ''cl-20200610-git''; + + parasites = [ "dbi/test" ]; description = ''Database independent interface for Common Lisp''; - deps = [ args."alexandria" args."bordeaux-threads" args."cl-annot" args."cl-syntax" args."cl-syntax-annot" args."closer-mop" args."named-readtables" args."split-sequence" args."trivial-types" ]; + deps = [ args."alexandria" args."bordeaux-threads" args."cl-mysql" args."cl-postgres" args."closer-mop" args."dbd-mysql" args."dbd-postgres" args."dbd-sqlite3" args."dbi-test" args."rove" args."split-sequence" args."sqlite" args."trivial-garbage" args."trivial-types" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-dbi/2019-10-07/cl-dbi-20191007-git.tgz''; - sha256 = ''0xsg0xqq88wsx6wf8nllfd0mk356bw2qw3c5c31rfj41wz5vpx35''; + url = ''http://beta.quicklisp.org/archive/cl-dbi/2020-06-10/cl-dbi-20200610-git.tgz''; + sha256 = ''1d7hwywcqzqwmr5b42c0mmjq3v3xxd4cwb4fn5k1wd7j6pr0bkas''; }; packageName = "dbi"; @@ -18,19 +20,22 @@ rec { overrides = x: x; } /* (SYSTEM dbi DESCRIPTION Database independent interface for Common Lisp - SHA256 0xsg0xqq88wsx6wf8nllfd0mk356bw2qw3c5c31rfj41wz5vpx35 URL - http://beta.quicklisp.org/archive/cl-dbi/2019-10-07/cl-dbi-20191007-git.tgz - MD5 bf524c4000468d12627fa419ae412abb NAME dbi FILENAME dbi DEPS + SHA256 1d7hwywcqzqwmr5b42c0mmjq3v3xxd4cwb4fn5k1wd7j6pr0bkas URL + http://beta.quicklisp.org/archive/cl-dbi/2020-06-10/cl-dbi-20200610-git.tgz + MD5 2caeb911b23327e054986211d6bfea55 NAME dbi FILENAME dbi DEPS ((NAME alexandria FILENAME alexandria) (NAME bordeaux-threads FILENAME bordeaux-threads) - (NAME cl-annot FILENAME cl-annot) (NAME cl-syntax FILENAME cl-syntax) - (NAME cl-syntax-annot FILENAME cl-syntax-annot) - (NAME closer-mop FILENAME closer-mop) - (NAME named-readtables FILENAME named-readtables) - (NAME split-sequence FILENAME split-sequence) + (NAME cl-mysql FILENAME cl-mysql) (NAME cl-postgres FILENAME cl-postgres) + (NAME closer-mop FILENAME closer-mop) (NAME dbd-mysql FILENAME dbd-mysql) + (NAME dbd-postgres FILENAME dbd-postgres) + (NAME dbd-sqlite3 FILENAME dbd-sqlite3) (NAME dbi-test FILENAME dbi-test) + (NAME rove FILENAME rove) (NAME split-sequence FILENAME split-sequence) + (NAME sqlite FILENAME sqlite) + (NAME trivial-garbage FILENAME trivial-garbage) (NAME trivial-types FILENAME trivial-types)) DEPENDENCIES - (alexandria bordeaux-threads cl-annot cl-syntax cl-syntax-annot closer-mop - named-readtables split-sequence trivial-types) - VERSION cl-20191007-git SIBLINGS - (cl-dbi dbd-mysql dbd-postgres dbd-sqlite3 dbi-test) PARASITES NIL) */ + (alexandria bordeaux-threads cl-mysql cl-postgres closer-mop dbd-mysql + dbd-postgres dbd-sqlite3 dbi-test rove split-sequence sqlite + trivial-garbage trivial-types) + VERSION cl-20200610-git SIBLINGS + (cl-dbi dbd-mysql dbd-postgres dbd-sqlite3 dbi-test) PARASITES (dbi/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbus.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbus.nix index 5043ff2e261..1ea512d0ab7 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbus.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dbus.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''dbus''; - version = ''20190521-git''; + version = ''20200610-git''; description = ''A D-BUS client library for Common Lisp''; deps = [ args."alexandria" args."asdf-package-system" args."babel" args."cl-xmlspam" args."flexi-streams" args."ieee-floats" args."iolib" args."ironclad" args."trivial-garbage" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/dbus/2019-05-21/dbus-20190521-git.tgz''; - sha256 = ''0g4hsygy52rylhi19kxxhv9dbbirl6hdisgqw89whdxb9py6ifqq''; + url = ''http://beta.quicklisp.org/archive/dbus/2020-06-10/dbus-20200610-git.tgz''; + sha256 = ''1njwjf1z9xngsfmlddmbcan49vcjqvvxfkhbi62xcxwbn9rgqn79''; }; packageName = "dbus"; @@ -18,9 +18,9 @@ rec { overrides = x: x; } /* (SYSTEM dbus DESCRIPTION A D-BUS client library for Common Lisp SHA256 - 0g4hsygy52rylhi19kxxhv9dbbirl6hdisgqw89whdxb9py6ifqq URL - http://beta.quicklisp.org/archive/dbus/2019-05-21/dbus-20190521-git.tgz MD5 - 59e7ab92086503e4185273ec3f3ba3fc NAME dbus FILENAME dbus DEPS + 1njwjf1z9xngsfmlddmbcan49vcjqvvxfkhbi62xcxwbn9rgqn79 URL + http://beta.quicklisp.org/archive/dbus/2020-06-10/dbus-20200610-git.tgz MD5 + 421fb481812b2da62fa5ee424f607b12 NAME dbus FILENAME dbus DEPS ((NAME alexandria FILENAME alexandria) (NAME asdf-package-system FILENAME asdf-package-system) (NAME babel FILENAME babel) (NAME cl-xmlspam FILENAME cl-xmlspam) @@ -31,4 +31,4 @@ rec { DEPENDENCIES (alexandria asdf-package-system babel cl-xmlspam flexi-streams ieee-floats iolib ironclad trivial-garbage) - VERSION 20190521-git SIBLINGS NIL PARASITES NIL) */ + VERSION 20200610-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dexador.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dexador.nix index 6e043269f82..1fb2381ffc2 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dexador.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dexador.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''dexador''; - version = ''20191007-git''; + version = ''20200427-git''; description = ''Yet another HTTP client for Common Lisp''; - deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."chipz" args."chunga" args."cl_plus_ssl" args."cl-base64" args."cl-cookie" args."cl-fad" args."cl-ppcre" args."cl-reexport" args."cl-utilities" args."fast-http" args."fast-io" args."flexi-streams" args."local-time" args."proc-parse" args."quri" args."smart-buffer" args."split-sequence" args."static-vectors" args."trivial-features" args."trivial-garbage" args."trivial-gray-streams" args."trivial-mimes" args."usocket" args."xsubseq" ]; + deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."chipz" args."chunga" args."cl_plus_ssl" args."cl-base64" args."cl-cookie" args."cl-ppcre" args."cl-reexport" args."cl-utilities" args."fast-http" args."fast-io" args."flexi-streams" args."local-time" args."proc-parse" args."quri" args."smart-buffer" args."split-sequence" args."static-vectors" args."trivial-features" args."trivial-garbage" args."trivial-gray-streams" args."trivial-mimes" args."usocket" args."xsubseq" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/dexador/2019-10-07/dexador-20191007-git.tgz''; - sha256 = ''1q0anlgbg5gbk9ifynnn6dd894d9hvjsrd45jjklkjabhywgizk7''; + url = ''http://beta.quicklisp.org/archive/dexador/2020-04-27/dexador-20200427-git.tgz''; + sha256 = ''0qy8x47ni270dzwscy86nkwfzn491w2jqwyg57dm6w8lkjzwpgld''; }; packageName = "dexador"; @@ -18,17 +18,16 @@ rec { overrides = x: x; } /* (SYSTEM dexador DESCRIPTION Yet another HTTP client for Common Lisp SHA256 - 1q0anlgbg5gbk9ifynnn6dd894d9hvjsrd45jjklkjabhywgizk7 URL - http://beta.quicklisp.org/archive/dexador/2019-10-07/dexador-20191007-git.tgz - MD5 aa1c435f809a794610fe599987cb73a8 NAME dexador FILENAME dexador DEPS + 0qy8x47ni270dzwscy86nkwfzn491w2jqwyg57dm6w8lkjzwpgld URL + http://beta.quicklisp.org/archive/dexador/2020-04-27/dexador-20200427-git.tgz + MD5 1c418ff2381f1fe128cde8c121effecb NAME dexador FILENAME dexador DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME bordeaux-threads FILENAME bordeaux-threads) (NAME cffi FILENAME cffi) (NAME cffi-grovel FILENAME cffi-grovel) (NAME cffi-toolchain FILENAME cffi-toolchain) (NAME chipz FILENAME chipz) (NAME chunga FILENAME chunga) (NAME cl+ssl FILENAME cl_plus_ssl) (NAME cl-base64 FILENAME cl-base64) (NAME cl-cookie FILENAME cl-cookie) - (NAME cl-fad FILENAME cl-fad) (NAME cl-ppcre FILENAME cl-ppcre) - (NAME cl-reexport FILENAME cl-reexport) + (NAME cl-ppcre FILENAME cl-ppcre) (NAME cl-reexport FILENAME cl-reexport) (NAME cl-utilities FILENAME cl-utilities) (NAME fast-http FILENAME fast-http) (NAME fast-io FILENAME fast-io) (NAME flexi-streams FILENAME flexi-streams) @@ -44,8 +43,8 @@ rec { (NAME usocket FILENAME usocket) (NAME xsubseq FILENAME xsubseq)) DEPENDENCIES (alexandria babel bordeaux-threads cffi cffi-grovel cffi-toolchain chipz - chunga cl+ssl cl-base64 cl-cookie cl-fad cl-ppcre cl-reexport cl-utilities + chunga cl+ssl cl-base64 cl-cookie cl-ppcre cl-reexport cl-utilities fast-http fast-io flexi-streams local-time proc-parse quri smart-buffer split-sequence static-vectors trivial-features trivial-garbage trivial-gray-streams trivial-mimes usocket xsubseq) - VERSION 20191007-git SIBLINGS (dexador-test) PARASITES NIL) */ + VERSION 20200427-git SIBLINGS (dexador-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dissect.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dissect.nix index c6ab6ac38e1..2df2c14c129 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dissect.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dissect.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''dissect''; - version = ''20190710-git''; + version = ''20200427-git''; description = ''A lib for introspecting the call stack and active restarts.''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/dissect/2019-07-10/dissect-20190710-git.tgz''; - sha256 = ''15h653gbi9iybns0ll8rhjr7diwwnq4g9wf51f6d9846nl1v424b''; + url = ''http://beta.quicklisp.org/archive/dissect/2020-04-27/dissect-20200427-git.tgz''; + sha256 = ''1d7sri20jma9r105lxv0sx2q60kb8zp7bf023kain3rnyqr74v8a''; }; packageName = "dissect"; @@ -19,7 +19,7 @@ rec { } /* (SYSTEM dissect DESCRIPTION A lib for introspecting the call stack and active restarts. SHA256 - 15h653gbi9iybns0ll8rhjr7diwwnq4g9wf51f6d9846nl1v424b URL - http://beta.quicklisp.org/archive/dissect/2019-07-10/dissect-20190710-git.tgz - MD5 fb0e90e86fe4c184c08d19c1ef61d4e4 NAME dissect FILENAME dissect DEPS NIL - DEPENDENCIES NIL VERSION 20190710-git SIBLINGS NIL PARASITES NIL) */ + 1d7sri20jma9r105lxv0sx2q60kb8zp7bf023kain3rnyqr74v8a URL + http://beta.quicklisp.org/archive/dissect/2020-04-27/dissect-20200427-git.tgz + MD5 2cce2469353cac86ee3c0358b9b99f3d NAME dissect FILENAME dissect DEPS NIL + DEPENDENCIES NIL VERSION 20200427-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/djula.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/djula.nix new file mode 100644 index 00000000000..1b919e63a5f --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/djula.nix @@ -0,0 +1,53 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''djula''; + version = ''20201016-git''; + + description = ''An implementation of Django templates for Common Lisp.''; + + deps = [ args."access" args."alexandria" args."anaphora" args."arnesi" args."babel" args."cl-annot" args."cl-interpol" args."cl-locale" args."cl-ppcre" args."cl-slice" args."cl-syntax" args."cl-syntax-annot" args."cl-unicode" args."closer-mop" args."collectors" args."flexi-streams" args."gettext" args."iterate" args."let-plus" args."local-time" args."named-readtables" args."parser-combinators" args."split-sequence" args."symbol-munger" args."trivial-backtrace" args."trivial-features" args."trivial-gray-streams" args."trivial-types" args."yacc" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/djula/2020-10-16/djula-20201016-git.tgz''; + sha256 = ''09j9wmvs3vgx291p11dclrpwx0dqknazzadikg2320nv7a29zgiy''; + }; + + packageName = "djula"; + + asdFilesToKeep = ["djula.asd"]; + overrides = x: x; +} +/* (SYSTEM djula DESCRIPTION + An implementation of Django templates for Common Lisp. SHA256 + 09j9wmvs3vgx291p11dclrpwx0dqknazzadikg2320nv7a29zgiy URL + http://beta.quicklisp.org/archive/djula/2020-10-16/djula-20201016-git.tgz + MD5 524843c7ff05d01dcb19a10eb793e967 NAME djula FILENAME djula DEPS + ((NAME access FILENAME access) (NAME alexandria FILENAME alexandria) + (NAME anaphora FILENAME anaphora) (NAME arnesi FILENAME arnesi) + (NAME babel FILENAME babel) (NAME cl-annot FILENAME cl-annot) + (NAME cl-interpol FILENAME cl-interpol) + (NAME cl-locale FILENAME cl-locale) (NAME cl-ppcre FILENAME cl-ppcre) + (NAME cl-slice FILENAME cl-slice) (NAME cl-syntax FILENAME cl-syntax) + (NAME cl-syntax-annot FILENAME cl-syntax-annot) + (NAME cl-unicode FILENAME cl-unicode) + (NAME closer-mop FILENAME closer-mop) + (NAME collectors FILENAME collectors) + (NAME flexi-streams FILENAME flexi-streams) + (NAME gettext FILENAME gettext) (NAME iterate FILENAME iterate) + (NAME let-plus FILENAME let-plus) (NAME local-time FILENAME local-time) + (NAME named-readtables FILENAME named-readtables) + (NAME parser-combinators FILENAME parser-combinators) + (NAME split-sequence FILENAME split-sequence) + (NAME symbol-munger FILENAME symbol-munger) + (NAME trivial-backtrace FILENAME trivial-backtrace) + (NAME trivial-features FILENAME trivial-features) + (NAME trivial-gray-streams FILENAME trivial-gray-streams) + (NAME trivial-types FILENAME trivial-types) (NAME yacc FILENAME yacc)) + DEPENDENCIES + (access alexandria anaphora arnesi babel cl-annot cl-interpol cl-locale + cl-ppcre cl-slice cl-syntax cl-syntax-annot cl-unicode closer-mop + collectors flexi-streams gettext iterate let-plus local-time + named-readtables parser-combinators split-sequence symbol-munger + trivial-backtrace trivial-features trivial-gray-streams trivial-types + yacc) + VERSION 20201016-git SIBLINGS (djula-demo djula-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dynamic-classes.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/dynamic-classes.nix deleted file mode 100644 index 8c318204572..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/dynamic-classes.nix +++ /dev/null @@ -1,26 +0,0 @@ -args @ { fetchurl, ... }: -{ - baseName = ''dynamic-classes''; - version = ''20130128-git''; - - description = ''''; - - deps = [ args."metatilities-base" ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/dynamic-classes/2013-01-28/dynamic-classes-20130128-git.tgz''; - sha256 = ''0i2b9k8f8jgn86kz503z267w0zv4gdqajzw755xwhqfaknix74sa''; - }; - - packageName = "dynamic-classes"; - - asdFilesToKeep = ["dynamic-classes.asd"]; - overrides = x: x; -} -/* (SYSTEM dynamic-classes DESCRIPTION NIL SHA256 - 0i2b9k8f8jgn86kz503z267w0zv4gdqajzw755xwhqfaknix74sa URL - http://beta.quicklisp.org/archive/dynamic-classes/2013-01-28/dynamic-classes-20130128-git.tgz - MD5 a6ed01c4f21df2b6a142328b24ac7ba3 NAME dynamic-classes FILENAME - dynamic-classes DEPS ((NAME metatilities-base FILENAME metatilities-base)) - DEPENDENCIES (metatilities-base) VERSION 20130128-git SIBLINGS - (dynamic-classes-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/enchant.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/enchant.nix new file mode 100644 index 00000000000..a5e44cefa4b --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/enchant.nix @@ -0,0 +1,29 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''enchant''; + version = ''cl-20190521-git''; + + description = ''Programming interface for Enchant spell-checker library''; + + deps = [ args."alexandria" args."babel" args."cffi" args."trivial-features" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-enchant/2019-05-21/cl-enchant-20190521-git.tgz''; + sha256 = ''16ag48fr74m536an8fak5z0lfjdb265gv1ajai1lqg0vq2l5mr14''; + }; + + packageName = "enchant"; + + asdFilesToKeep = ["enchant.asd"]; + overrides = x: x; +} +/* (SYSTEM enchant DESCRIPTION + Programming interface for Enchant spell-checker library SHA256 + 16ag48fr74m536an8fak5z0lfjdb265gv1ajai1lqg0vq2l5mr14 URL + http://beta.quicklisp.org/archive/cl-enchant/2019-05-21/cl-enchant-20190521-git.tgz + MD5 2a868c280fd5a74f9c298c384567e31b NAME enchant FILENAME enchant DEPS + ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) + (NAME cffi FILENAME cffi) + (NAME trivial-features FILENAME trivial-features)) + DEPENDENCIES (alexandria babel cffi trivial-features) VERSION + cl-20190521-git SIBLINGS (enchant-autoload) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/eos.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/eos.nix deleted file mode 100644 index aa2b01e6bcd..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/eos.nix +++ /dev/null @@ -1,26 +0,0 @@ -{ fetchurl, ... }: -{ - baseName = ''eos''; - version = ''20150608-git''; - - parasites = [ "eos-tests" ]; - - description = ''UNMAINTAINED fork of 5AM, a test framework''; - - deps = [ ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/eos/2015-06-08/eos-20150608-git.tgz''; - sha256 = ''0fhcvg59p13h1d5h8fnssa8hn3lh19lzysazvrbxyfizfibyydr8''; - }; - - packageName = "eos"; - - asdFilesToKeep = ["eos.asd"]; - overrides = x: x; -} -/* (SYSTEM eos DESCRIPTION UNMAINTAINED fork of 5AM, a test framework SHA256 - 0fhcvg59p13h1d5h8fnssa8hn3lh19lzysazvrbxyfizfibyydr8 URL - http://beta.quicklisp.org/archive/eos/2015-06-08/eos-20150608-git.tgz MD5 - 94f6a72534171ff6adcc823c31e3d53f NAME eos FILENAME eos DEPS NIL - DEPENDENCIES NIL VERSION 20150608-git SIBLINGS NIL PARASITES (eos-tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/esrap.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/esrap.nix index 5ea7943aaf7..946c71a2f5b 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/esrap.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/esrap.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''esrap''; - version = ''20191227-git''; + version = ''20200325-git''; parasites = [ "esrap/tests" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."alexandria" args."fiveam" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/esrap/2019-12-27/esrap-20191227-git.tgz''; - sha256 = ''0614lb8iyraihx2m81manlyd3x89snsn9a1mihlil85piswdbiv8''; + url = ''http://beta.quicklisp.org/archive/esrap/2020-03-25/esrap-20200325-git.tgz''; + sha256 = ''1pwgjsm19nxx8d4iwbn3x7g08r6qyq1vmp9m83m87r53597b3a68''; }; packageName = "esrap"; @@ -21,9 +21,9 @@ rec { } /* (SYSTEM esrap DESCRIPTION A Packrat / Parsing Grammar / TDPL parser for Common Lisp. SHA256 - 0614lb8iyraihx2m81manlyd3x89snsn9a1mihlil85piswdbiv8 URL - http://beta.quicklisp.org/archive/esrap/2019-12-27/esrap-20191227-git.tgz - MD5 8dd58ffc605bba6eec614bdea573978b NAME esrap FILENAME esrap DEPS + 1pwgjsm19nxx8d4iwbn3x7g08r6qyq1vmp9m83m87r53597b3a68 URL + http://beta.quicklisp.org/archive/esrap/2020-03-25/esrap-20200325-git.tgz + MD5 bcc4e07536153072edf1d57f871bc142 NAME esrap FILENAME esrap DEPS ((NAME alexandria FILENAME alexandria) (NAME fiveam FILENAME fiveam)) - DEPENDENCIES (alexandria fiveam) VERSION 20191227-git SIBLINGS NIL + DEPENDENCIES (alexandria fiveam) VERSION 20200325-git SIBLINGS NIL PARASITES (esrap/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-csv.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-csv.nix new file mode 100644 index 00000000000..67d75b89dbd --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-csv.nix @@ -0,0 +1,24 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''fare-csv''; + version = ''20171227-git''; + + description = ''Robust CSV parser and printer''; + + deps = [ ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/fare-csv/2017-12-27/fare-csv-20171227-git.tgz''; + sha256 = ''1hkzg05kq2c4xihsfx4wk1k6mmjq2fw40id8vy0315rpa47a5i7x''; + }; + + packageName = "fare-csv"; + + asdFilesToKeep = ["fare-csv.asd"]; + overrides = x: x; +} +/* (SYSTEM fare-csv DESCRIPTION Robust CSV parser and printer SHA256 + 1hkzg05kq2c4xihsfx4wk1k6mmjq2fw40id8vy0315rpa47a5i7x URL + http://beta.quicklisp.org/archive/fare-csv/2017-12-27/fare-csv-20171227-git.tgz + MD5 1d73aaac9fcd86cc5ddb72019722bc2a NAME fare-csv FILENAME fare-csv DEPS + NIL DEPENDENCIES NIL VERSION 20171227-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-mop.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-mop.nix new file mode 100644 index 00000000000..a5cec39c15f --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-mop.nix @@ -0,0 +1,28 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''fare-mop''; + version = ''20151218-git''; + + description = ''Utilities using the MOP; notably make informative pretty-printing trivial''; + + deps = [ args."closer-mop" args."fare-utils" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/fare-mop/2015-12-18/fare-mop-20151218-git.tgz''; + sha256 = ''0bvrwqvacy114xsblrk2w28qk6b484a3p0w14mzl264b3wjrdna9''; + }; + + packageName = "fare-mop"; + + asdFilesToKeep = ["fare-mop.asd"]; + overrides = x: x; +} +/* (SYSTEM fare-mop DESCRIPTION + Utilities using the MOP; notably make informative pretty-printing trivial + SHA256 0bvrwqvacy114xsblrk2w28qk6b484a3p0w14mzl264b3wjrdna9 URL + http://beta.quicklisp.org/archive/fare-mop/2015-12-18/fare-mop-20151218-git.tgz + MD5 4721ff62e2ac2c55079cdd4f2a0f6d4a NAME fare-mop FILENAME fare-mop DEPS + ((NAME closer-mop FILENAME closer-mop) + (NAME fare-utils FILENAME fare-utils)) + DEPENDENCIES (closer-mop fare-utils) VERSION 20151218-git SIBLINGS NIL + PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote-extras.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote-extras.nix index 5247b169789..ff03567a1a6 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote-extras.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote-extras.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''fare-quasiquote-extras''; - version = ''fare-quasiquote-20190521-git''; + version = ''fare-quasiquote-20200925-git''; description = ''fare-quasiquote plus extras''; - deps = [ args."alexandria" args."closer-mop" args."fare-quasiquote" args."fare-quasiquote-optima" args."fare-quasiquote-readtable" args."fare-utils" args."named-readtables" args."optima" ]; + deps = [ args."alexandria" args."closer-mop" args."fare-quasiquote" args."fare-quasiquote-optima" args."fare-quasiquote-readtable" args."fare-utils" args."lisp-namespace" args."named-readtables" args."trivia_dot_level0" args."trivia_dot_level1" args."trivia_dot_level2" args."trivia_dot_quasiquote" args."trivia_dot_trivial" args."trivial-cltl2" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/fare-quasiquote/2019-05-21/fare-quasiquote-20190521-git.tgz''; - sha256 = ''1skrj68dnmihckip1vyc31xysbdsw9ihb7imks73cickkvv6yjfj''; + url = ''http://beta.quicklisp.org/archive/fare-quasiquote/2020-09-25/fare-quasiquote-20200925-git.tgz''; + sha256 = ''0k25kx4gvr046bcnv5mqxbb4483v9p2lk7dvzjkgj2cxrvczmj8b''; }; packageName = "fare-quasiquote-extras"; @@ -18,9 +18,9 @@ rec { overrides = x: x; } /* (SYSTEM fare-quasiquote-extras DESCRIPTION fare-quasiquote plus extras - SHA256 1skrj68dnmihckip1vyc31xysbdsw9ihb7imks73cickkvv6yjfj URL - http://beta.quicklisp.org/archive/fare-quasiquote/2019-05-21/fare-quasiquote-20190521-git.tgz - MD5 e08c24d35a485a74642bd0c7c06662d6 NAME fare-quasiquote-extras FILENAME + SHA256 0k25kx4gvr046bcnv5mqxbb4483v9p2lk7dvzjkgj2cxrvczmj8b URL + http://beta.quicklisp.org/archive/fare-quasiquote/2020-09-25/fare-quasiquote-20200925-git.tgz + MD5 7af0a97c445d88acacecfc851496adb3 NAME fare-quasiquote-extras FILENAME fare-quasiquote-extras DEPS ((NAME alexandria FILENAME alexandria) (NAME closer-mop FILENAME closer-mop) @@ -28,12 +28,19 @@ rec { (NAME fare-quasiquote-optima FILENAME fare-quasiquote-optima) (NAME fare-quasiquote-readtable FILENAME fare-quasiquote-readtable) (NAME fare-utils FILENAME fare-utils) + (NAME lisp-namespace FILENAME lisp-namespace) (NAME named-readtables FILENAME named-readtables) - (NAME optima FILENAME optima)) + (NAME trivia.level0 FILENAME trivia_dot_level0) + (NAME trivia.level1 FILENAME trivia_dot_level1) + (NAME trivia.level2 FILENAME trivia_dot_level2) + (NAME trivia.quasiquote FILENAME trivia_dot_quasiquote) + (NAME trivia.trivial FILENAME trivia_dot_trivial) + (NAME trivial-cltl2 FILENAME trivial-cltl2)) DEPENDENCIES (alexandria closer-mop fare-quasiquote fare-quasiquote-optima - fare-quasiquote-readtable fare-utils named-readtables optima) - VERSION fare-quasiquote-20190521-git SIBLINGS - (fare-quasiquote-optima fare-quasiquote-readtable fare-quasiquote-test - fare-quasiquote) + fare-quasiquote-readtable fare-utils lisp-namespace named-readtables + trivia.level0 trivia.level1 trivia.level2 trivia.quasiquote trivia.trivial + trivial-cltl2) + VERSION fare-quasiquote-20200925-git SIBLINGS + (fare-quasiquote-optima fare-quasiquote-readtable fare-quasiquote) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote-optima.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote-optima.nix index da6c1947902..2f1ef3e5b12 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote-optima.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote-optima.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''fare-quasiquote-optima''; - version = ''fare-quasiquote-20190521-git''; + version = ''fare-quasiquote-20200925-git''; description = ''fare-quasiquote extension for optima''; - deps = [ args."alexandria" args."closer-mop" args."fare-quasiquote" args."fare-utils" args."optima" ]; + deps = [ args."alexandria" args."closer-mop" args."fare-quasiquote" args."fare-quasiquote-readtable" args."fare-utils" args."lisp-namespace" args."named-readtables" args."trivia_dot_level0" args."trivia_dot_level1" args."trivia_dot_level2" args."trivia_dot_quasiquote" args."trivia_dot_trivial" args."trivial-cltl2" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/fare-quasiquote/2019-05-21/fare-quasiquote-20190521-git.tgz''; - sha256 = ''1skrj68dnmihckip1vyc31xysbdsw9ihb7imks73cickkvv6yjfj''; + url = ''http://beta.quicklisp.org/archive/fare-quasiquote/2020-09-25/fare-quasiquote-20200925-git.tgz''; + sha256 = ''0k25kx4gvr046bcnv5mqxbb4483v9p2lk7dvzjkgj2cxrvczmj8b''; }; packageName = "fare-quasiquote-optima"; @@ -19,16 +19,27 @@ rec { } /* (SYSTEM fare-quasiquote-optima DESCRIPTION fare-quasiquote extension for optima SHA256 - 1skrj68dnmihckip1vyc31xysbdsw9ihb7imks73cickkvv6yjfj URL - http://beta.quicklisp.org/archive/fare-quasiquote/2019-05-21/fare-quasiquote-20190521-git.tgz - MD5 e08c24d35a485a74642bd0c7c06662d6 NAME fare-quasiquote-optima FILENAME + 0k25kx4gvr046bcnv5mqxbb4483v9p2lk7dvzjkgj2cxrvczmj8b URL + http://beta.quicklisp.org/archive/fare-quasiquote/2020-09-25/fare-quasiquote-20200925-git.tgz + MD5 7af0a97c445d88acacecfc851496adb3 NAME fare-quasiquote-optima FILENAME fare-quasiquote-optima DEPS ((NAME alexandria FILENAME alexandria) (NAME closer-mop FILENAME closer-mop) (NAME fare-quasiquote FILENAME fare-quasiquote) - (NAME fare-utils FILENAME fare-utils) (NAME optima FILENAME optima)) - DEPENDENCIES (alexandria closer-mop fare-quasiquote fare-utils optima) - VERSION fare-quasiquote-20190521-git SIBLINGS - (fare-quasiquote-extras fare-quasiquote-readtable fare-quasiquote-test - fare-quasiquote) + (NAME fare-quasiquote-readtable FILENAME fare-quasiquote-readtable) + (NAME fare-utils FILENAME fare-utils) + (NAME lisp-namespace FILENAME lisp-namespace) + (NAME named-readtables FILENAME named-readtables) + (NAME trivia.level0 FILENAME trivia_dot_level0) + (NAME trivia.level1 FILENAME trivia_dot_level1) + (NAME trivia.level2 FILENAME trivia_dot_level2) + (NAME trivia.quasiquote FILENAME trivia_dot_quasiquote) + (NAME trivia.trivial FILENAME trivia_dot_trivial) + (NAME trivial-cltl2 FILENAME trivial-cltl2)) + DEPENDENCIES + (alexandria closer-mop fare-quasiquote fare-quasiquote-readtable fare-utils + lisp-namespace named-readtables trivia.level0 trivia.level1 trivia.level2 + trivia.quasiquote trivia.trivial trivial-cltl2) + VERSION fare-quasiquote-20200925-git SIBLINGS + (fare-quasiquote-extras fare-quasiquote-readtable fare-quasiquote) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote-readtable.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote-readtable.nix index 4af3c19fa67..7d332085e20 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote-readtable.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote-readtable.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''fare-quasiquote-readtable''; - version = ''fare-quasiquote-20190521-git''; + version = ''fare-quasiquote-20200925-git''; description = ''Using fare-quasiquote with named-readtable''; deps = [ args."fare-quasiquote" args."fare-utils" args."named-readtables" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/fare-quasiquote/2019-05-21/fare-quasiquote-20190521-git.tgz''; - sha256 = ''1skrj68dnmihckip1vyc31xysbdsw9ihb7imks73cickkvv6yjfj''; + url = ''http://beta.quicklisp.org/archive/fare-quasiquote/2020-09-25/fare-quasiquote-20200925-git.tgz''; + sha256 = ''0k25kx4gvr046bcnv5mqxbb4483v9p2lk7dvzjkgj2cxrvczmj8b''; }; packageName = "fare-quasiquote-readtable"; @@ -19,15 +19,14 @@ rec { } /* (SYSTEM fare-quasiquote-readtable DESCRIPTION Using fare-quasiquote with named-readtable SHA256 - 1skrj68dnmihckip1vyc31xysbdsw9ihb7imks73cickkvv6yjfj URL - http://beta.quicklisp.org/archive/fare-quasiquote/2019-05-21/fare-quasiquote-20190521-git.tgz - MD5 e08c24d35a485a74642bd0c7c06662d6 NAME fare-quasiquote-readtable + 0k25kx4gvr046bcnv5mqxbb4483v9p2lk7dvzjkgj2cxrvczmj8b URL + http://beta.quicklisp.org/archive/fare-quasiquote/2020-09-25/fare-quasiquote-20200925-git.tgz + MD5 7af0a97c445d88acacecfc851496adb3 NAME fare-quasiquote-readtable FILENAME fare-quasiquote-readtable DEPS ((NAME fare-quasiquote FILENAME fare-quasiquote) (NAME fare-utils FILENAME fare-utils) (NAME named-readtables FILENAME named-readtables)) DEPENDENCIES (fare-quasiquote fare-utils named-readtables) VERSION - fare-quasiquote-20190521-git SIBLINGS - (fare-quasiquote-extras fare-quasiquote-optima fare-quasiquote-test - fare-quasiquote) - PARASITES NIL) */ + fare-quasiquote-20200925-git SIBLINGS + (fare-quasiquote-extras fare-quasiquote-optima fare-quasiquote) PARASITES + NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote.nix index fe31fcd5d32..d5b282e289a 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fare-quasiquote.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''fare-quasiquote''; - version = ''20190521-git''; + version = ''20200925-git''; description = ''Portable, matchable implementation of quasiquote''; deps = [ args."fare-utils" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/fare-quasiquote/2019-05-21/fare-quasiquote-20190521-git.tgz''; - sha256 = ''1skrj68dnmihckip1vyc31xysbdsw9ihb7imks73cickkvv6yjfj''; + url = ''http://beta.quicklisp.org/archive/fare-quasiquote/2020-09-25/fare-quasiquote-20200925-git.tgz''; + sha256 = ''0k25kx4gvr046bcnv5mqxbb4483v9p2lk7dvzjkgj2cxrvczmj8b''; }; packageName = "fare-quasiquote"; @@ -19,11 +19,10 @@ rec { } /* (SYSTEM fare-quasiquote DESCRIPTION Portable, matchable implementation of quasiquote SHA256 - 1skrj68dnmihckip1vyc31xysbdsw9ihb7imks73cickkvv6yjfj URL - http://beta.quicklisp.org/archive/fare-quasiquote/2019-05-21/fare-quasiquote-20190521-git.tgz - MD5 e08c24d35a485a74642bd0c7c06662d6 NAME fare-quasiquote FILENAME + 0k25kx4gvr046bcnv5mqxbb4483v9p2lk7dvzjkgj2cxrvczmj8b URL + http://beta.quicklisp.org/archive/fare-quasiquote/2020-09-25/fare-quasiquote-20200925-git.tgz + MD5 7af0a97c445d88acacecfc851496adb3 NAME fare-quasiquote FILENAME fare-quasiquote DEPS ((NAME fare-utils FILENAME fare-utils)) DEPENDENCIES - (fare-utils) VERSION 20190521-git SIBLINGS - (fare-quasiquote-extras fare-quasiquote-optima fare-quasiquote-readtable - fare-quasiquote-test) + (fare-utils) VERSION 20200925-git SIBLINGS + (fare-quasiquote-extras fare-quasiquote-optima fare-quasiquote-readtable) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fast-io.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fast-io.nix index 89bed83acd5..9d7999b750c 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fast-io.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fast-io.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''fast-io''; - version = ''20171023-git''; + version = ''20200925-git''; description = ''Alternative I/O mechanism to a stream or vector''; deps = [ args."alexandria" args."babel" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."static-vectors" args."trivial-features" args."trivial-gray-streams" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/fast-io/2017-10-23/fast-io-20171023-git.tgz''; - sha256 = ''09w4awnvw772s24ivgzx2irhy701nrsxbim6ip5rc70rfzbff8sl''; + url = ''http://beta.quicklisp.org/archive/fast-io/2020-09-25/fast-io-20200925-git.tgz''; + sha256 = ''1rgyr6y20fp3jqnx5snpjf9lngzalip2a28l04ssypwagmhaa975''; }; packageName = "fast-io"; @@ -18,9 +18,9 @@ rec { overrides = x: x; } /* (SYSTEM fast-io DESCRIPTION Alternative I/O mechanism to a stream or vector - SHA256 09w4awnvw772s24ivgzx2irhy701nrsxbim6ip5rc70rfzbff8sl URL - http://beta.quicklisp.org/archive/fast-io/2017-10-23/fast-io-20171023-git.tgz - MD5 89105f8277f3bf3709fae1b789e3d5ad NAME fast-io FILENAME fast-io DEPS + SHA256 1rgyr6y20fp3jqnx5snpjf9lngzalip2a28l04ssypwagmhaa975 URL + http://beta.quicklisp.org/archive/fast-io/2020-09-25/fast-io-20200925-git.tgz + MD5 aa948bd29b8733f08e79a60226243117 NAME fast-io FILENAME fast-io DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME cffi FILENAME cffi) (NAME cffi-grovel FILENAME cffi-grovel) (NAME cffi-toolchain FILENAME cffi-toolchain) @@ -30,4 +30,4 @@ rec { DEPENDENCIES (alexandria babel cffi cffi-grovel cffi-toolchain static-vectors trivial-features trivial-gray-streams) - VERSION 20171023-git SIBLINGS (fast-io-test) PARASITES NIL) */ + VERSION 20200925-git SIBLINGS (fast-io-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fiasco.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fiasco.nix index 1e7e0db5ec4..68e5e00085c 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fiasco.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fiasco.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''fiasco''; - version = ''20191130-git''; + version = ''20200610-git''; parasites = [ "fiasco-self-tests" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."alexandria" args."trivial-gray-streams" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/fiasco/2019-11-30/fiasco-20191130-git.tgz''; - sha256 = ''0jpxzrac8kzb34b9n5zyh3wcz0wghxd7pq8xwxp87yg6c3927sl0''; + url = ''http://beta.quicklisp.org/archive/fiasco/2020-06-10/fiasco-20200610-git.tgz''; + sha256 = ''1wb0ibw6ka9fbsb40zjipn7vh3jbzyfsvcc9gq19nqhbqa8gy9r4''; }; packageName = "fiasco"; @@ -21,10 +21,10 @@ rec { } /* (SYSTEM fiasco DESCRIPTION A Common Lisp test framework that treasures your failures, logical continuation of Stefil. - SHA256 0jpxzrac8kzb34b9n5zyh3wcz0wghxd7pq8xwxp87yg6c3927sl0 URL - http://beta.quicklisp.org/archive/fiasco/2019-11-30/fiasco-20191130-git.tgz - MD5 235809b661c89fed1c4ca4ba3e4f3606 NAME fiasco FILENAME fiasco DEPS + SHA256 1wb0ibw6ka9fbsb40zjipn7vh3jbzyfsvcc9gq19nqhbqa8gy9r4 URL + http://beta.quicklisp.org/archive/fiasco/2020-06-10/fiasco-20200610-git.tgz + MD5 c5a84e4a0a8afe45729cd6e39af772ac NAME fiasco FILENAME fiasco DEPS ((NAME alexandria FILENAME alexandria) (NAME trivial-gray-streams FILENAME trivial-gray-streams)) - DEPENDENCIES (alexandria trivial-gray-streams) VERSION 20191130-git + DEPENDENCIES (alexandria trivial-gray-streams) VERSION 20200610-git SIBLINGS NIL PARASITES (fiasco-self-tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fiveam.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fiveam.nix index be9648a0da4..45af1934223 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fiveam.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fiveam.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''fiveam''; - version = ''v1.4.1''; + version = ''20200925-git''; parasites = [ "fiveam/test" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."alexandria" args."net_dot_didierverna_dot_asdf-flv" args."trivial-backtrace" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/fiveam/2018-02-28/fiveam-v1.4.1.tgz''; - sha256 = ''06y82y58x0haj20pkbqvm1rv19adafyvf01q56v73yhzs94nb7f3''; + url = ''http://beta.quicklisp.org/archive/fiveam/2020-09-25/fiveam-20200925-git.tgz''; + sha256 = ''0j9dzjs4prlx33f5idbcic4amx2mcgnjcyrpc3dd4b7lrw426l0d''; }; packageName = "fiveam"; @@ -20,11 +20,11 @@ rec { overrides = x: x; } /* (SYSTEM fiveam DESCRIPTION A simple regression testing framework SHA256 - 06y82y58x0haj20pkbqvm1rv19adafyvf01q56v73yhzs94nb7f3 URL - http://beta.quicklisp.org/archive/fiveam/2018-02-28/fiveam-v1.4.1.tgz MD5 - 7f182f8a4c12b98671e1707ae0f140b7 NAME fiveam FILENAME fiveam DEPS + 0j9dzjs4prlx33f5idbcic4amx2mcgnjcyrpc3dd4b7lrw426l0d URL + http://beta.quicklisp.org/archive/fiveam/2020-09-25/fiveam-20200925-git.tgz + MD5 858ecfdf7821630ad11e6859100d4650 NAME fiveam FILENAME fiveam DEPS ((NAME alexandria FILENAME alexandria) (NAME net.didierverna.asdf-flv FILENAME net_dot_didierverna_dot_asdf-flv) (NAME trivial-backtrace FILENAME trivial-backtrace)) DEPENDENCIES (alexandria net.didierverna.asdf-flv trivial-backtrace) - VERSION v1.4.1 SIBLINGS NIL PARASITES (fiveam/test)) */ + VERSION 20200925-git SIBLINGS NIL PARASITES (fiveam/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/flexi-streams.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/flexi-streams.nix index d9b25bebddc..a1828981c07 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/flexi-streams.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/flexi-streams.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''flexi-streams''; - version = ''20190107-git''; + version = ''20200925-git''; parasites = [ "flexi-streams-test" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."trivial-gray-streams" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/flexi-streams/2019-01-07/flexi-streams-20190107-git.tgz''; - sha256 = ''1fqkkvspsdzvrr2rkp6i631m7bwx06j68s19cjzpmnhr9zn696i5''; + url = ''http://beta.quicklisp.org/archive/flexi-streams/2020-09-25/flexi-streams-20200925-git.tgz''; + sha256 = ''1hmsryfkjnk4gdv803s3hpp71fpdybfl1jb5hgngxpd5lsrq0gb2''; }; packageName = "flexi-streams"; @@ -20,10 +20,10 @@ rec { overrides = x: x; } /* (SYSTEM flexi-streams DESCRIPTION Flexible bivalent streams for Common Lisp - SHA256 1fqkkvspsdzvrr2rkp6i631m7bwx06j68s19cjzpmnhr9zn696i5 URL - http://beta.quicklisp.org/archive/flexi-streams/2019-01-07/flexi-streams-20190107-git.tgz - MD5 b59014f9f9f0d1b94f161e36e64a35c2 NAME flexi-streams FILENAME + SHA256 1hmsryfkjnk4gdv803s3hpp71fpdybfl1jb5hgngxpd5lsrq0gb2 URL + http://beta.quicklisp.org/archive/flexi-streams/2020-09-25/flexi-streams-20200925-git.tgz + MD5 0d7bd1e542fe0a0d9728c45f70a95e36 NAME flexi-streams FILENAME flexi-streams DEPS ((NAME trivial-gray-streams FILENAME trivial-gray-streams)) DEPENDENCIES - (trivial-gray-streams) VERSION 20190107-git SIBLINGS NIL PARASITES + (trivial-gray-streams) VERSION 20200925-git SIBLINGS NIL PARASITES (flexi-streams-test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fset.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fset.nix index d901df215a6..12e168e44f6 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/fset.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/fset.nix @@ -1,17 +1,19 @@ args @ { fetchurl, ... }: rec { baseName = ''fset''; - version = ''20171019-git''; + version = ''20200925-git''; + + parasites = [ "fset/test" ]; description = ''A functional set-theoretic collections library. See: http://www.ergy.com/FSet.html ''; - deps = [ args."misc-extensions" args."mt19937" ]; + deps = [ args."misc-extensions" args."mt19937" args."named-readtables" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/fset/2017-10-19/fset-20171019-git.tgz''; - sha256 = ''07qxbj40kmjknmvvb47prj81mpi6j39150iw57hlrzdhlndvilwg''; + url = ''http://beta.quicklisp.org/archive/fset/2020-09-25/fset-20200925-git.tgz''; + sha256 = ''19fr6ds1a493b0kbsligpn7i771r1yfshbbkdp0hxs4l792l05wv''; }; packageName = "fset"; @@ -22,10 +24,11 @@ See: http://www.ergy.com/FSet.html /* (SYSTEM fset DESCRIPTION A functional set-theoretic collections library. See: http://www.ergy.com/FSet.html - SHA256 07qxbj40kmjknmvvb47prj81mpi6j39150iw57hlrzdhlndvilwg URL - http://beta.quicklisp.org/archive/fset/2017-10-19/fset-20171019-git.tgz MD5 - dc8de5917c513302dd0e135e6c133978 NAME fset FILENAME fset DEPS + SHA256 19fr6ds1a493b0kbsligpn7i771r1yfshbbkdp0hxs4l792l05wv URL + http://beta.quicklisp.org/archive/fset/2020-09-25/fset-20200925-git.tgz MD5 + 481e7207099c061459db68813e7bf70c NAME fset FILENAME fset DEPS ((NAME misc-extensions FILENAME misc-extensions) - (NAME mt19937 FILENAME mt19937)) - DEPENDENCIES (misc-extensions mt19937) VERSION 20171019-git SIBLINGS NIL - PARASITES NIL) */ + (NAME mt19937 FILENAME mt19937) + (NAME named-readtables FILENAME named-readtables)) + DEPENDENCIES (misc-extensions mt19937 named-readtables) VERSION + 20200925-git SIBLINGS NIL PARASITES (fset/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/garbage-pools.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/garbage-pools.nix deleted file mode 100644 index e961aecf854..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/garbage-pools.nix +++ /dev/null @@ -1,25 +0,0 @@ -{ fetchurl, ... }: -{ - baseName = ''garbage-pools''; - version = ''20130720-git''; - - description = ''''; - - deps = [ ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/garbage-pools/2013-07-20/garbage-pools-20130720-git.tgz''; - sha256 = ''1idnba1pxayn0k5yzqp9lswg7ywjhavi59lrdnphfqajjpyi9w05''; - }; - - packageName = "garbage-pools"; - - asdFilesToKeep = ["garbage-pools.asd"]; - overrides = x: x; -} -/* (SYSTEM garbage-pools DESCRIPTION NIL SHA256 - 1idnba1pxayn0k5yzqp9lswg7ywjhavi59lrdnphfqajjpyi9w05 URL - http://beta.quicklisp.org/archive/garbage-pools/2013-07-20/garbage-pools-20130720-git.tgz - MD5 f691e2ddf6ba22b3451c24b61d4ee8b6 NAME garbage-pools FILENAME - garbage-pools DEPS NIL DEPENDENCIES NIL VERSION 20130720-git SIBLINGS - (garbage-pools-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/gettext.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/gettext.nix new file mode 100644 index 00000000000..ffc517973d5 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/gettext.nix @@ -0,0 +1,30 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''gettext''; + version = ''20171130-git''; + + description = ''An pure Common Lisp implementation of gettext runtime. gettext is an internationalization and localization (i18n) system commonly used for writing multilingual programs on Unix-like computer operating systems.''; + + deps = [ args."flexi-streams" args."split-sequence" args."trivial-gray-streams" args."yacc" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/gettext/2017-11-30/gettext-20171130-git.tgz''; + sha256 = ''0nb8i66sb5qmpnk6rk2adlr87m322bra0xpirp63872mybd3y6yd''; + }; + + packageName = "gettext"; + + asdFilesToKeep = ["gettext.asd"]; + overrides = x: x; +} +/* (SYSTEM gettext DESCRIPTION + An pure Common Lisp implementation of gettext runtime. gettext is an internationalization and localization (i18n) system commonly used for writing multilingual programs on Unix-like computer operating systems. + SHA256 0nb8i66sb5qmpnk6rk2adlr87m322bra0xpirp63872mybd3y6yd URL + http://beta.quicklisp.org/archive/gettext/2017-11-30/gettext-20171130-git.tgz + MD5 d162cb5310db5011c82ef6343fd280ed NAME gettext FILENAME gettext DEPS + ((NAME flexi-streams FILENAME flexi-streams) + (NAME split-sequence FILENAME split-sequence) + (NAME trivial-gray-streams FILENAME trivial-gray-streams) + (NAME yacc FILENAME yacc)) + DEPENDENCIES (flexi-streams split-sequence trivial-gray-streams yacc) + VERSION 20171130-git SIBLINGS (gettext-example gettext-tests) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/html-encode.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/html-encode.nix new file mode 100644 index 00000000000..9f4672644fa --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/html-encode.nix @@ -0,0 +1,25 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''html-encode''; + version = ''1.2''; + + description = ''A library for encoding text in various web-savvy encodings.''; + + deps = [ ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/html-encode/2010-10-06/html-encode-1.2.tgz''; + sha256 = ''06mf8wn95yf5swhmzk4vp0xr4ylfl33dgfknkabbkd8n6jns8gcf''; + }; + + packageName = "html-encode"; + + asdFilesToKeep = ["html-encode.asd"]; + overrides = x: x; +} +/* (SYSTEM html-encode DESCRIPTION + A library for encoding text in various web-savvy encodings. SHA256 + 06mf8wn95yf5swhmzk4vp0xr4ylfl33dgfknkabbkd8n6jns8gcf URL + http://beta.quicklisp.org/archive/html-encode/2010-10-06/html-encode-1.2.tgz + MD5 67f22483fe6d270b8830f78f285a1016 NAME html-encode FILENAME html-encode + DEPS NIL DEPENDENCIES NIL VERSION 1.2 SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/hu_dot_dwim_dot_asdf.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/hu_dot_dwim_dot_asdf.nix index 1f2700608e3..074e2ac9671 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/hu_dot_dwim_dot_asdf.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/hu_dot_dwim_dot_asdf.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''hu_dot_dwim_dot_asdf''; - version = ''20190521-darcs''; + version = ''20200925-darcs''; description = ''Various ASDF extensions such as attached test and documentation system, explicit development support, etc.''; deps = [ args."uiop" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/hu.dwim.asdf/2019-05-21/hu.dwim.asdf-20190521-darcs.tgz''; - sha256 = ''0rsbv71vyszy8w35yjwb5h6zcmknjq223hkzir79y72qdsc6sabn''; + url = ''http://beta.quicklisp.org/archive/hu.dwim.asdf/2020-09-25/hu.dwim.asdf-20200925-darcs.tgz''; + sha256 = ''1812gk65x8yy8s817zhzga52zvdlagws4sw6a8f6zk7yaaa6br8h''; }; packageName = "hu.dwim.asdf"; @@ -19,8 +19,8 @@ rec { } /* (SYSTEM hu.dwim.asdf DESCRIPTION Various ASDF extensions such as attached test and documentation system, explicit development support, etc. - SHA256 0rsbv71vyszy8w35yjwb5h6zcmknjq223hkzir79y72qdsc6sabn URL - http://beta.quicklisp.org/archive/hu.dwim.asdf/2019-05-21/hu.dwim.asdf-20190521-darcs.tgz - MD5 b359bf05f587196eba172803b5594318 NAME hu.dwim.asdf FILENAME + SHA256 1812gk65x8yy8s817zhzga52zvdlagws4sw6a8f6zk7yaaa6br8h URL + http://beta.quicklisp.org/archive/hu.dwim.asdf/2020-09-25/hu.dwim.asdf-20200925-darcs.tgz + MD5 feec747077117dd9850db77ed1919c21 NAME hu.dwim.asdf FILENAME hu_dot_dwim_dot_asdf DEPS ((NAME uiop FILENAME uiop)) DEPENDENCIES (uiop) - VERSION 20190521-darcs SIBLINGS (hu.dwim.asdf.documentation) PARASITES NIL) */ + VERSION 20200925-darcs SIBLINGS (hu.dwim.asdf.documentation) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/hu_dot_dwim_dot_defclass-star.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/hu_dot_dwim_dot_defclass-star.nix new file mode 100644 index 00000000000..a554ef8d680 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/hu_dot_dwim_dot_defclass-star.nix @@ -0,0 +1,31 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''hu_dot_dwim_dot_defclass-star''; + version = ''20150709-darcs''; + + description = ''Simplify class like definitions with defclass* and friends.''; + + deps = [ args."hu_dot_dwim_dot_asdf" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/hu.dwim.defclass-star/2015-07-09/hu.dwim.defclass-star-20150709-darcs.tgz''; + sha256 = ''032982lyp0hm0ssxlyh572whi2hr4j1nqkyqlllaj373v0dbs3vs''; + }; + + packageName = "hu.dwim.defclass-star"; + + asdFilesToKeep = ["hu.dwim.defclass-star.asd"]; + overrides = x: x; +} +/* (SYSTEM hu.dwim.defclass-star DESCRIPTION + Simplify class like definitions with defclass* and friends. SHA256 + 032982lyp0hm0ssxlyh572whi2hr4j1nqkyqlllaj373v0dbs3vs URL + http://beta.quicklisp.org/archive/hu.dwim.defclass-star/2015-07-09/hu.dwim.defclass-star-20150709-darcs.tgz + MD5 e37f386dca8f789fb2e303a1914f0415 NAME hu.dwim.defclass-star FILENAME + hu_dot_dwim_dot_defclass-star DEPS + ((NAME hu.dwim.asdf FILENAME hu_dot_dwim_dot_asdf)) DEPENDENCIES + (hu.dwim.asdf) VERSION 20150709-darcs SIBLINGS + (hu.dwim.defclass-star+contextl hu.dwim.defclass-star+hu.dwim.def+contextl + hu.dwim.defclass-star+hu.dwim.def hu.dwim.defclass-star+swank + hu.dwim.defclass-star.documentation hu.dwim.defclass-star.test) + PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/hu_dot_dwim_dot_stefil.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/hu_dot_dwim_dot_stefil.nix index 51f4a2d0698..d49a382a3a3 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/hu_dot_dwim_dot_stefil.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/hu_dot_dwim_dot_stefil.nix @@ -1,17 +1,17 @@ args @ { fetchurl, ... }: rec { baseName = ''hu_dot_dwim_dot_stefil''; - version = ''20170403-darcs''; + version = ''20200218-darcs''; parasites = [ "hu.dwim.stefil/test" ]; description = ''A Simple Test Framework In Lisp.''; - deps = [ args."alexandria" args."hu_dot_dwim_dot_asdf" ]; + deps = [ args."alexandria" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/hu.dwim.stefil/2017-04-03/hu.dwim.stefil-20170403-darcs.tgz''; - sha256 = ''1irrsb0xfc5bx49aqs4ak0xzpjbjhxi9igx5x392gb5pzsak2r9n''; + url = ''http://beta.quicklisp.org/archive/hu.dwim.stefil/2020-02-18/hu.dwim.stefil-20200218-darcs.tgz''; + sha256 = ''16p25pq9fhk0dny6r43yl9z24g6qm6dag9zf2cila9v9jh3r76qf''; }; packageName = "hu.dwim.stefil"; @@ -20,13 +20,11 @@ rec { overrides = x: x; } /* (SYSTEM hu.dwim.stefil DESCRIPTION A Simple Test Framework In Lisp. SHA256 - 1irrsb0xfc5bx49aqs4ak0xzpjbjhxi9igx5x392gb5pzsak2r9n URL - http://beta.quicklisp.org/archive/hu.dwim.stefil/2017-04-03/hu.dwim.stefil-20170403-darcs.tgz - MD5 ea8be76a360b1df297a8bbd50be0d8a1 NAME hu.dwim.stefil FILENAME - hu_dot_dwim_dot_stefil DEPS - ((NAME alexandria FILENAME alexandria) - (NAME hu.dwim.asdf FILENAME hu_dot_dwim_dot_asdf)) - DEPENDENCIES (alexandria hu.dwim.asdf) VERSION 20170403-darcs SIBLINGS + 16p25pq9fhk0dny6r43yl9z24g6qm6dag9zf2cila9v9jh3r76qf URL + http://beta.quicklisp.org/archive/hu.dwim.stefil/2020-02-18/hu.dwim.stefil-20200218-darcs.tgz + MD5 3e87e0973f8373e342b75b13c802cc53 NAME hu.dwim.stefil FILENAME + hu_dot_dwim_dot_stefil DEPS ((NAME alexandria FILENAME alexandria)) + DEPENDENCIES (alexandria) VERSION 20200218-darcs SIBLINGS (hu.dwim.stefil+hu.dwim.def+swank hu.dwim.stefil+hu.dwim.def hu.dwim.stefil+swank) PARASITES (hu.dwim.stefil/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/hunchentoot.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/hunchentoot.nix index e822fb48715..d874120e7d8 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/hunchentoot.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/hunchentoot.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''hunchentoot''; - version = ''v1.2.38''; + version = ''v1.3.0''; parasites = [ "hunchentoot-test" ]; @@ -13,8 +13,8 @@ rec { deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."chunga" args."cl_plus_ssl" args."cl-base64" args."cl-fad" args."cl-ppcre" args."cl-who" args."drakma" args."flexi-streams" args."md5" args."rfc2388" args."split-sequence" args."trivial-backtrace" args."trivial-features" args."trivial-garbage" args."trivial-gray-streams" args."usocket" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/hunchentoot/2017-12-27/hunchentoot-v1.2.38.tgz''; - sha256 = ''1d3gnqbk2s3g9q51sx8mcsp2rmbvcfanbnljsf19npgfmz1ypsgd''; + url = ''http://beta.quicklisp.org/archive/hunchentoot/2020-06-10/hunchentoot-v1.3.0.tgz''; + sha256 = ''08znpi5lq2dhgv6mhvabk3w4ggrg31dbv4k6gmshr18xd2lq43i8''; }; packageName = "hunchentoot"; @@ -27,9 +27,9 @@ rec { BORDEAUX-THREADS. It supports HTTP 1.1, serves static files, has a simple framework for user-defined handlers and can be extended through subclassing. - SHA256 1d3gnqbk2s3g9q51sx8mcsp2rmbvcfanbnljsf19npgfmz1ypsgd URL - http://beta.quicklisp.org/archive/hunchentoot/2017-12-27/hunchentoot-v1.2.38.tgz - MD5 878a7833eb34a53231011b78e998e2fa NAME hunchentoot FILENAME hunchentoot + SHA256 08znpi5lq2dhgv6mhvabk3w4ggrg31dbv4k6gmshr18xd2lq43i8 URL + http://beta.quicklisp.org/archive/hunchentoot/2020-06-10/hunchentoot-v1.3.0.tgz + MD5 b1bb0c8df41a0ffaba4309e5084930fe NAME hunchentoot FILENAME hunchentoot DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME bordeaux-threads FILENAME bordeaux-threads) @@ -50,4 +50,4 @@ rec { cl-ppcre cl-who drakma flexi-streams md5 rfc2388 split-sequence trivial-backtrace trivial-features trivial-garbage trivial-gray-streams usocket) - VERSION v1.2.38 SIBLINGS NIL PARASITES (hunchentoot-test)) */ + VERSION v1.3.0 SIBLINGS NIL PARASITES (hunchentoot-test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/inferior-shell.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/inferior-shell.nix new file mode 100644 index 00000000000..2072945f264 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/inferior-shell.nix @@ -0,0 +1,54 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''inferior-shell''; + version = ''20200925-git''; + + parasites = [ "inferior-shell/test" ]; + + description = ''spawn local or remote processes and shell pipes''; + + deps = [ args."alexandria" args."closer-mop" args."fare-mop" args."fare-quasiquote" args."fare-quasiquote-extras" args."fare-quasiquote-optima" args."fare-quasiquote-readtable" args."fare-utils" args."hu_dot_dwim_dot_stefil" args."introspect-environment" args."iterate" args."lisp-namespace" args."named-readtables" args."trivia" args."trivia_dot_balland2006" args."trivia_dot_level0" args."trivia_dot_level1" args."trivia_dot_level2" args."trivia_dot_quasiquote" args."trivia_dot_trivial" args."trivial-cltl2" args."type-i" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/inferior-shell/2020-09-25/inferior-shell-20200925-git.tgz''; + sha256 = ''1hykybcmdpcjk0irl4f1lmqc4aawpp1zfvh27qp6mldsibra7l80''; + }; + + packageName = "inferior-shell"; + + asdFilesToKeep = ["inferior-shell.asd"]; + overrides = x: x; +} +/* (SYSTEM inferior-shell DESCRIPTION + spawn local or remote processes and shell pipes SHA256 + 1hykybcmdpcjk0irl4f1lmqc4aawpp1zfvh27qp6mldsibra7l80 URL + http://beta.quicklisp.org/archive/inferior-shell/2020-09-25/inferior-shell-20200925-git.tgz + MD5 7ca5f15446ef80715758610a930bccba NAME inferior-shell FILENAME + inferior-shell DEPS + ((NAME alexandria FILENAME alexandria) + (NAME closer-mop FILENAME closer-mop) (NAME fare-mop FILENAME fare-mop) + (NAME fare-quasiquote FILENAME fare-quasiquote) + (NAME fare-quasiquote-extras FILENAME fare-quasiquote-extras) + (NAME fare-quasiquote-optima FILENAME fare-quasiquote-optima) + (NAME fare-quasiquote-readtable FILENAME fare-quasiquote-readtable) + (NAME fare-utils FILENAME fare-utils) + (NAME hu.dwim.stefil FILENAME hu_dot_dwim_dot_stefil) + (NAME introspect-environment FILENAME introspect-environment) + (NAME iterate FILENAME iterate) + (NAME lisp-namespace FILENAME lisp-namespace) + (NAME named-readtables FILENAME named-readtables) + (NAME trivia FILENAME trivia) + (NAME trivia.balland2006 FILENAME trivia_dot_balland2006) + (NAME trivia.level0 FILENAME trivia_dot_level0) + (NAME trivia.level1 FILENAME trivia_dot_level1) + (NAME trivia.level2 FILENAME trivia_dot_level2) + (NAME trivia.quasiquote FILENAME trivia_dot_quasiquote) + (NAME trivia.trivial FILENAME trivia_dot_trivial) + (NAME trivial-cltl2 FILENAME trivial-cltl2) (NAME type-i FILENAME type-i)) + DEPENDENCIES + (alexandria closer-mop fare-mop fare-quasiquote fare-quasiquote-extras + fare-quasiquote-optima fare-quasiquote-readtable fare-utils hu.dwim.stefil + introspect-environment iterate lisp-namespace named-readtables trivia + trivia.balland2006 trivia.level0 trivia.level1 trivia.level2 + trivia.quasiquote trivia.trivial trivial-cltl2 type-i) + VERSION 20200925-git SIBLINGS NIL PARASITES (inferior-shell/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/introspect-environment.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/introspect-environment.nix index 1677e5adcde..68024ad2a5a 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/introspect-environment.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/introspect-environment.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''introspect-environment''; - version = ''20151031-git''; + version = ''20200715-git''; description = ''Small interface to portable but nonstandard introspection of CL environments.''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/introspect-environment/2015-10-31/introspect-environment-20151031-git.tgz''; - sha256 = ''0npydsmksbm3nisy9whnivmmhgdira74plmncmaklp7yhqsvwc30''; + url = ''http://beta.quicklisp.org/archive/introspect-environment/2020-07-15/introspect-environment-20200715-git.tgz''; + sha256 = ''1m2vqpbrvjb0mkmi2n5rg3j0dr68hyv23lbw6s474hylx02nw5ns''; }; packageName = "introspect-environment"; @@ -19,8 +19,8 @@ rec { } /* (SYSTEM introspect-environment DESCRIPTION Small interface to portable but nonstandard introspection of CL environments. - SHA256 0npydsmksbm3nisy9whnivmmhgdira74plmncmaklp7yhqsvwc30 URL - http://beta.quicklisp.org/archive/introspect-environment/2015-10-31/introspect-environment-20151031-git.tgz - MD5 3c61088583f11791530edb2e18f5d6f0 NAME introspect-environment FILENAME - introspect-environment DEPS NIL DEPENDENCIES NIL VERSION 20151031-git + SHA256 1m2vqpbrvjb0mkmi2n5rg3j0dr68hyv23lbw6s474hylx02nw5ns URL + http://beta.quicklisp.org/archive/introspect-environment/2020-07-15/introspect-environment-20200715-git.tgz + MD5 d129641b18376741e7106bd13e476cb8 NAME introspect-environment FILENAME + introspect-environment DEPS NIL DEPENDENCIES NIL VERSION 20200715-git SIBLINGS (introspect-environment-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/ironclad.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/ironclad.nix index 0c4d3d758a1..84298e81820 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/ironclad.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/ironclad.nix @@ -1,17 +1,17 @@ args @ { fetchurl, ... }: rec { baseName = ''ironclad''; - version = ''v0.47''; + version = ''v0.51''; parasites = [ "ironclad/tests" ]; description = ''A cryptographic toolkit written in pure Common Lisp''; - deps = [ args."alexandria" args."bordeaux-threads" args."nibbles" args."rt" ]; + deps = [ args."alexandria" args."bordeaux-threads" args."rt" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/ironclad/2019-10-07/ironclad-v0.47.tgz''; - sha256 = ''1aczr4678jxz9kvzvwfdbgdbqhihsbj1nz6j2qflc9sdr6hx24rk''; + url = ''http://beta.quicklisp.org/archive/ironclad/2020-09-25/ironclad-v0.51.tgz''; + sha256 = ''0zfazyvg91fxr9gm195qwwf1y5qdci7i1cwzpv0fggxhylpkswrn''; }; packageName = "ironclad"; @@ -21,11 +21,10 @@ rec { } /* (SYSTEM ironclad DESCRIPTION A cryptographic toolkit written in pure Common Lisp SHA256 - 1aczr4678jxz9kvzvwfdbgdbqhihsbj1nz6j2qflc9sdr6hx24rk URL - http://beta.quicklisp.org/archive/ironclad/2019-10-07/ironclad-v0.47.tgz - MD5 b82d370b037422fcaf8953857f03b5f6 NAME ironclad FILENAME ironclad DEPS + 0zfazyvg91fxr9gm195qwwf1y5qdci7i1cwzpv0fggxhylpkswrn URL + http://beta.quicklisp.org/archive/ironclad/2020-09-25/ironclad-v0.51.tgz + MD5 23b0b6a654bceca511e100fdc976e107 NAME ironclad FILENAME ironclad DEPS ((NAME alexandria FILENAME alexandria) - (NAME bordeaux-threads FILENAME bordeaux-threads) - (NAME nibbles FILENAME nibbles) (NAME rt FILENAME rt)) - DEPENDENCIES (alexandria bordeaux-threads nibbles rt) VERSION v0.47 - SIBLINGS (ironclad-text) PARASITES (ironclad/tests)) */ + (NAME bordeaux-threads FILENAME bordeaux-threads) (NAME rt FILENAME rt)) + DEPENDENCIES (alexandria bordeaux-threads rt) VERSION v0.51 SIBLINGS + (ironclad-text) PARASITES (ironclad/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/iterate.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/iterate.nix index f276ec72736..e3e1fa689a0 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/iterate.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/iterate.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''iterate''; - version = ''20180228-git''; + version = ''20200610-git''; parasites = [ "iterate/tests" ]; @@ -10,8 +10,8 @@ rec { deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/iterate/2018-02-28/iterate-20180228-git.tgz''; - sha256 = ''0bz5dspx778v2fdfbi5x8v8r56mmda8svhp3immjkrpzc21rc7ib''; + url = ''http://beta.quicklisp.org/archive/iterate/2020-06-10/iterate-20200610-git.tgz''; + sha256 = ''0xz3v321b8zgjsgak432frs0gmpr2n24sf5gq97qnqvwqfn4infb''; }; packageName = "iterate"; @@ -21,8 +21,8 @@ rec { } /* (SYSTEM iterate DESCRIPTION Jonathan Amsterdam's iterator/gatherer/accumulator facility SHA256 - 0bz5dspx778v2fdfbi5x8v8r56mmda8svhp3immjkrpzc21rc7ib URL - http://beta.quicklisp.org/archive/iterate/2018-02-28/iterate-20180228-git.tgz - MD5 ee3b198b0f9674c11e5283e56f57ed78 NAME iterate FILENAME iterate DEPS NIL - DEPENDENCIES NIL VERSION 20180228-git SIBLINGS NIL PARASITES + 0xz3v321b8zgjsgak432frs0gmpr2n24sf5gq97qnqvwqfn4infb URL + http://beta.quicklisp.org/archive/iterate/2020-06-10/iterate-20200610-git.tgz + MD5 289e02704d6312910d07601bc563f0a5 NAME iterate FILENAME iterate DEPS NIL + DEPENDENCIES NIL VERSION 20200610-git SIBLINGS NIL PARASITES (iterate/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/ixf.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/ixf.nix deleted file mode 100644 index 9d219f4c193..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/ixf.nix +++ /dev/null @@ -1,34 +0,0 @@ -args @ { fetchurl, ... }: -{ - baseName = ''ixf''; - version = ''cl-20180228-git''; - - description = ''Tools to handle IBM PC version of IXF file format''; - - deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cl-fad" args."cl-ppcre" args."ieee-floats" args."local-time" args."md5" args."split-sequence" args."trivial-features" ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-ixf/2018-02-28/cl-ixf-20180228-git.tgz''; - sha256 = ''1yqlzyl51kj5fjfg064fc9606zha5b2xdjapfivr2vqz4azs1nvs''; - }; - - packageName = "ixf"; - - asdFilesToKeep = ["ixf.asd"]; - overrides = x: x; -} -/* (SYSTEM ixf DESCRIPTION Tools to handle IBM PC version of IXF file format - SHA256 1yqlzyl51kj5fjfg064fc9606zha5b2xdjapfivr2vqz4azs1nvs URL - http://beta.quicklisp.org/archive/cl-ixf/2018-02-28/cl-ixf-20180228-git.tgz - MD5 23732795aa317d24c1a40cc321a0e394 NAME ixf FILENAME ixf DEPS - ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) - (NAME bordeaux-threads FILENAME bordeaux-threads) - (NAME cl-fad FILENAME cl-fad) (NAME cl-ppcre FILENAME cl-ppcre) - (NAME ieee-floats FILENAME ieee-floats) - (NAME local-time FILENAME local-time) (NAME md5 FILENAME md5) - (NAME split-sequence FILENAME split-sequence) - (NAME trivial-features FILENAME trivial-features)) - DEPENDENCIES - (alexandria babel bordeaux-threads cl-fad cl-ppcre ieee-floats local-time - md5 split-sequence trivial-features) - VERSION cl-20180228-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/jonathan.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/jonathan.nix index 702eb2d05b5..a29a02c5e61 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/jonathan.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/jonathan.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''jonathan''; - version = ''20190202-git''; + version = ''20200925-git''; description = ''High performance JSON encoder and decoder. Currently support: SBCL, CCL.''; deps = [ args."alexandria" args."babel" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."cl-annot" args."cl-ppcre" args."cl-syntax" args."cl-syntax-annot" args."fast-io" args."named-readtables" args."proc-parse" args."static-vectors" args."trivial-features" args."trivial-gray-streams" args."trivial-types" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/jonathan/2019-02-02/jonathan-20190202-git.tgz''; - sha256 = ''1p70ji0mwx11q5iy792lxpcbx7mzh4az88vgkq39yx1ffwvpxvwl''; + url = ''http://beta.quicklisp.org/archive/jonathan/2020-09-25/jonathan-20200925-git.tgz''; + sha256 = ''1y5v3g351nsy7px0frdr2asmcy0lyfbj73ic1f5yf4q65hrgvryx''; }; packageName = "jonathan"; @@ -19,9 +19,9 @@ rec { } /* (SYSTEM jonathan DESCRIPTION High performance JSON encoder and decoder. Currently support: SBCL, CCL. - SHA256 1p70ji0mwx11q5iy792lxpcbx7mzh4az88vgkq39yx1ffwvpxvwl URL - http://beta.quicklisp.org/archive/jonathan/2019-02-02/jonathan-20190202-git.tgz - MD5 bf340574fc901706ba2dcdc57e1e78ad NAME jonathan FILENAME jonathan DEPS + SHA256 1y5v3g351nsy7px0frdr2asmcy0lyfbj73ic1f5yf4q65hrgvryx URL + http://beta.quicklisp.org/archive/jonathan/2020-09-25/jonathan-20200925-git.tgz + MD5 27cad3c107544f587f9f33295c10d81e NAME jonathan FILENAME jonathan DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME cffi FILENAME cffi) (NAME cffi-grovel FILENAME cffi-grovel) (NAME cffi-toolchain FILENAME cffi-toolchain) @@ -39,4 +39,4 @@ rec { (alexandria babel cffi cffi-grovel cffi-toolchain cl-annot cl-ppcre cl-syntax cl-syntax-annot fast-io named-readtables proc-parse static-vectors trivial-features trivial-gray-streams trivial-types) - VERSION 20190202-git SIBLINGS (jonathan-test) PARASITES NIL) */ + VERSION 20200925-git SIBLINGS (jonathan-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/kmrcl.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/kmrcl.nix index e44004a9cf7..49bc7d4cab5 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/kmrcl.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/kmrcl.nix @@ -1,15 +1,17 @@ args @ { fetchurl, ... }: rec { baseName = ''kmrcl''; - version = ''20150923-git''; + version = ''20201016-git''; + + parasites = [ "kmrcl/test" ]; description = ''System lacks description''; - deps = [ ]; + deps = [ args."rt" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/kmrcl/2015-09-23/kmrcl-20150923-git.tgz''; - sha256 = ''0sx7p16pp5i4qr569p2265ky6rd65gyjp21k348a6c3fs2yn0r2g''; + url = ''http://beta.quicklisp.org/archive/kmrcl/2020-10-16/kmrcl-20201016-git.tgz''; + sha256 = ''0i0k61385hrzbg15qs1wprz6sis7mx2abxv1hqcc2f53rqm9b2hf''; }; packageName = "kmrcl"; @@ -18,7 +20,8 @@ rec { overrides = x: x; } /* (SYSTEM kmrcl DESCRIPTION System lacks description SHA256 - 0sx7p16pp5i4qr569p2265ky6rd65gyjp21k348a6c3fs2yn0r2g URL - http://beta.quicklisp.org/archive/kmrcl/2015-09-23/kmrcl-20150923-git.tgz - MD5 0cd15d3ed3e7d56528dd3243d1a5c9b1 NAME kmrcl FILENAME kmrcl DEPS NIL - DEPENDENCIES NIL VERSION 20150923-git SIBLINGS (kmrcl-tests) PARASITES NIL) */ + 0i0k61385hrzbg15qs1wprz6sis7mx2abxv1hqcc2f53rqm9b2hf URL + http://beta.quicklisp.org/archive/kmrcl/2020-10-16/kmrcl-20201016-git.tgz + MD5 f86bc410907f748c3c453469702755b8 NAME kmrcl FILENAME kmrcl DEPS + ((NAME rt FILENAME rt)) DEPENDENCIES (rt) VERSION 20201016-git SIBLINGS NIL + PARASITES (kmrcl/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack-component.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack-component.nix index fa3f977560b..0260d37f0bb 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack-component.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack-component.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''lack-component''; - version = ''lack-20191007-git''; + version = ''lack-20201016-git''; description = ''System lacks description''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/lack/2019-10-07/lack-20191007-git.tgz''; - sha256 = ''1pjvsk1hc0n6aki393mg2z0dd0xwbkm4pmdph78jlk683158an5s''; + url = ''http://beta.quicklisp.org/archive/lack/2020-10-16/lack-20201016-git.tgz''; + sha256 = ''124c3k8116m5gc0rp4vvkqcvz35lglrbwdq4i929hbq65xyx5gan''; }; packageName = "lack-component"; @@ -18,10 +18,10 @@ rec { overrides = x: x; } /* (SYSTEM lack-component DESCRIPTION System lacks description SHA256 - 1pjvsk1hc0n6aki393mg2z0dd0xwbkm4pmdph78jlk683158an5s URL - http://beta.quicklisp.org/archive/lack/2019-10-07/lack-20191007-git.tgz MD5 - bce7a6b5aefb5bfd3fbeb782dda7748f NAME lack-component FILENAME - lack-component DEPS NIL DEPENDENCIES NIL VERSION lack-20191007-git SIBLINGS + 124c3k8116m5gc0rp4vvkqcvz35lglrbwdq4i929hbq65xyx5gan URL + http://beta.quicklisp.org/archive/lack/2020-10-16/lack-20201016-git.tgz MD5 + 8a056801bd99fdd70cdfaf33129f6aeb NAME lack-component FILENAME + lack-component DEPS NIL DEPENDENCIES NIL VERSION lack-20201016-git SIBLINGS (lack-middleware-accesslog lack-middleware-auth-basic lack-middleware-backtrace lack-middleware-csrf lack-middleware-mount lack-middleware-session lack-middleware-static lack-request lack-response diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack-middleware-backtrace.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack-middleware-backtrace.nix index 84ca1d6b66a..610950054fa 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack-middleware-backtrace.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack-middleware-backtrace.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''lack-middleware-backtrace''; - version = ''lack-20191007-git''; + version = ''lack-20201016-git''; description = ''System lacks description''; deps = [ args."uiop" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/lack/2019-10-07/lack-20191007-git.tgz''; - sha256 = ''1pjvsk1hc0n6aki393mg2z0dd0xwbkm4pmdph78jlk683158an5s''; + url = ''http://beta.quicklisp.org/archive/lack/2020-10-16/lack-20201016-git.tgz''; + sha256 = ''124c3k8116m5gc0rp4vvkqcvz35lglrbwdq4i929hbq65xyx5gan''; }; packageName = "lack-middleware-backtrace"; @@ -18,11 +18,11 @@ rec { overrides = x: x; } /* (SYSTEM lack-middleware-backtrace DESCRIPTION System lacks description - SHA256 1pjvsk1hc0n6aki393mg2z0dd0xwbkm4pmdph78jlk683158an5s URL - http://beta.quicklisp.org/archive/lack/2019-10-07/lack-20191007-git.tgz MD5 - bce7a6b5aefb5bfd3fbeb782dda7748f NAME lack-middleware-backtrace FILENAME + SHA256 124c3k8116m5gc0rp4vvkqcvz35lglrbwdq4i929hbq65xyx5gan URL + http://beta.quicklisp.org/archive/lack/2020-10-16/lack-20201016-git.tgz MD5 + 8a056801bd99fdd70cdfaf33129f6aeb NAME lack-middleware-backtrace FILENAME lack-middleware-backtrace DEPS ((NAME uiop FILENAME uiop)) DEPENDENCIES - (uiop) VERSION lack-20191007-git SIBLINGS + (uiop) VERSION lack-20201016-git SIBLINGS (lack-component lack-middleware-accesslog lack-middleware-auth-basic lack-middleware-csrf lack-middleware-mount lack-middleware-session lack-middleware-static lack-request lack-response lack-session-store-dbi diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack-util.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack-util.nix index 1c2d2a1f6ac..1af4ec3f430 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack-util.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack-util.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''lack-util''; - version = ''lack-20191007-git''; + version = ''lack-20201016-git''; description = ''System lacks description''; - deps = [ args."alexandria" args."bordeaux-threads" args."ironclad" args."nibbles" ]; + deps = [ args."alexandria" args."bordeaux-threads" args."ironclad" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/lack/2019-10-07/lack-20191007-git.tgz''; - sha256 = ''1pjvsk1hc0n6aki393mg2z0dd0xwbkm4pmdph78jlk683158an5s''; + url = ''http://beta.quicklisp.org/archive/lack/2020-10-16/lack-20201016-git.tgz''; + sha256 = ''124c3k8116m5gc0rp4vvkqcvz35lglrbwdq4i929hbq65xyx5gan''; }; packageName = "lack-util"; @@ -18,14 +18,14 @@ rec { overrides = x: x; } /* (SYSTEM lack-util DESCRIPTION System lacks description SHA256 - 1pjvsk1hc0n6aki393mg2z0dd0xwbkm4pmdph78jlk683158an5s URL - http://beta.quicklisp.org/archive/lack/2019-10-07/lack-20191007-git.tgz MD5 - bce7a6b5aefb5bfd3fbeb782dda7748f NAME lack-util FILENAME lack-util DEPS + 124c3k8116m5gc0rp4vvkqcvz35lglrbwdq4i929hbq65xyx5gan URL + http://beta.quicklisp.org/archive/lack/2020-10-16/lack-20201016-git.tgz MD5 + 8a056801bd99fdd70cdfaf33129f6aeb NAME lack-util FILENAME lack-util DEPS ((NAME alexandria FILENAME alexandria) (NAME bordeaux-threads FILENAME bordeaux-threads) - (NAME ironclad FILENAME ironclad) (NAME nibbles FILENAME nibbles)) - DEPENDENCIES (alexandria bordeaux-threads ironclad nibbles) VERSION - lack-20191007-git SIBLINGS + (NAME ironclad FILENAME ironclad)) + DEPENDENCIES (alexandria bordeaux-threads ironclad) VERSION + lack-20201016-git SIBLINGS (lack-component lack-middleware-accesslog lack-middleware-auth-basic lack-middleware-backtrace lack-middleware-csrf lack-middleware-mount lack-middleware-session lack-middleware-static lack-request lack-response diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack.nix index 2dbe5defe8e..a85fab15c42 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/lack.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''lack''; - version = ''20191007-git''; + version = ''20201016-git''; description = ''A minimal Clack''; - deps = [ args."alexandria" args."bordeaux-threads" args."ironclad" args."lack-component" args."lack-util" args."nibbles" ]; + deps = [ args."alexandria" args."bordeaux-threads" args."ironclad" args."lack-component" args."lack-util" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/lack/2019-10-07/lack-20191007-git.tgz''; - sha256 = ''1pjvsk1hc0n6aki393mg2z0dd0xwbkm4pmdph78jlk683158an5s''; + url = ''http://beta.quicklisp.org/archive/lack/2020-10-16/lack-20201016-git.tgz''; + sha256 = ''124c3k8116m5gc0rp4vvkqcvz35lglrbwdq4i929hbq65xyx5gan''; }; packageName = "lack"; @@ -18,17 +18,17 @@ rec { overrides = x: x; } /* (SYSTEM lack DESCRIPTION A minimal Clack SHA256 - 1pjvsk1hc0n6aki393mg2z0dd0xwbkm4pmdph78jlk683158an5s URL - http://beta.quicklisp.org/archive/lack/2019-10-07/lack-20191007-git.tgz MD5 - bce7a6b5aefb5bfd3fbeb782dda7748f NAME lack FILENAME lack DEPS + 124c3k8116m5gc0rp4vvkqcvz35lglrbwdq4i929hbq65xyx5gan URL + http://beta.quicklisp.org/archive/lack/2020-10-16/lack-20201016-git.tgz MD5 + 8a056801bd99fdd70cdfaf33129f6aeb NAME lack FILENAME lack DEPS ((NAME alexandria FILENAME alexandria) (NAME bordeaux-threads FILENAME bordeaux-threads) (NAME ironclad FILENAME ironclad) (NAME lack-component FILENAME lack-component) - (NAME lack-util FILENAME lack-util) (NAME nibbles FILENAME nibbles)) + (NAME lack-util FILENAME lack-util)) DEPENDENCIES - (alexandria bordeaux-threads ironclad lack-component lack-util nibbles) - VERSION 20191007-git SIBLINGS + (alexandria bordeaux-threads ironclad lack-component lack-util) VERSION + 20201016-git SIBLINGS (lack-component lack-middleware-accesslog lack-middleware-auth-basic lack-middleware-backtrace lack-middleware-csrf lack-middleware-mount lack-middleware-session lack-middleware-static lack-request lack-response diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/list-of.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/list-of.nix deleted file mode 100644 index 4eb30ef013b..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/list-of.nix +++ /dev/null @@ -1,26 +0,0 @@ -args @ { fetchurl, ... }: -{ - baseName = ''list-of''; - version = ''asdf-finalizers-20170403-git''; - - description = ''magic list-of deftype''; - - deps = [ args."asdf-finalizers" ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/asdf-finalizers/2017-04-03/asdf-finalizers-20170403-git.tgz''; - sha256 = ''1w2ka0123icbjba7ngdd6h93j72g236h6jw4bsmvsak69fj0ybxj''; - }; - - packageName = "list-of"; - - asdFilesToKeep = ["list-of.asd"]; - overrides = x: x; -} -/* (SYSTEM list-of DESCRIPTION magic list-of deftype SHA256 - 1w2ka0123icbjba7ngdd6h93j72g236h6jw4bsmvsak69fj0ybxj URL - http://beta.quicklisp.org/archive/asdf-finalizers/2017-04-03/asdf-finalizers-20170403-git.tgz - MD5 a9e3c960e6b6fdbd69640b520ef8044b NAME list-of FILENAME list-of DEPS - ((NAME asdf-finalizers FILENAME asdf-finalizers)) DEPENDENCIES - (asdf-finalizers) VERSION asdf-finalizers-20170403-git SIBLINGS - (asdf-finalizers-test asdf-finalizers) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/local-time.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/local-time.nix index 5ffa27fcca5..c7d2f061f4b 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/local-time.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/local-time.nix @@ -1,17 +1,17 @@ args @ { fetchurl, ... }: rec { baseName = ''local-time''; - version = ''20190710-git''; + version = ''20200925-git''; parasites = [ "local-time/test" ]; description = ''A library for manipulating dates and times, based on a paper by Erik Naggum''; - deps = [ args."alexandria" args."bordeaux-threads" args."cl-fad" args."stefil" ]; + deps = [ args."stefil" args."uiop" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/local-time/2019-07-10/local-time-20190710-git.tgz''; - sha256 = ''1f6l5g4frb2cyqdyyr64wdhp3fralshm43q7rigsrcz2vx5y75jk''; + url = ''http://beta.quicklisp.org/archive/local-time/2020-09-25/local-time-20200925-git.tgz''; + sha256 = ''0rr2bs93vhj7ngplw85572jfx8250fr2iki8y9spxmfz1sldm12f''; }; packageName = "local-time"; @@ -21,12 +21,9 @@ rec { } /* (SYSTEM local-time DESCRIPTION A library for manipulating dates and times, based on a paper by Erik Naggum - SHA256 1f6l5g4frb2cyqdyyr64wdhp3fralshm43q7rigsrcz2vx5y75jk URL - http://beta.quicklisp.org/archive/local-time/2019-07-10/local-time-20190710-git.tgz - MD5 ff315f40d1f955210c78aa0804a117f2 NAME local-time FILENAME local-time - DEPS - ((NAME alexandria FILENAME alexandria) - (NAME bordeaux-threads FILENAME bordeaux-threads) - (NAME cl-fad FILENAME cl-fad) (NAME stefil FILENAME stefil)) - DEPENDENCIES (alexandria bordeaux-threads cl-fad stefil) VERSION - 20190710-git SIBLINGS (cl-postgres+local-time) PARASITES (local-time/test)) */ + SHA256 0rr2bs93vhj7ngplw85572jfx8250fr2iki8y9spxmfz1sldm12f URL + http://beta.quicklisp.org/archive/local-time/2020-09-25/local-time-20200925-git.tgz + MD5 81f29e965b234a498840ff38d0002048 NAME local-time FILENAME local-time + DEPS ((NAME stefil FILENAME stefil) (NAME uiop FILENAME uiop)) DEPENDENCIES + (stefil uiop) VERSION 20200925-git SIBLINGS (cl-postgres+local-time) + PARASITES (local-time/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/log4cl.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/log4cl.nix index 23412435fc4..222178b1556 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/log4cl.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/log4cl.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''log4cl''; - version = ''20191007-git''; + version = ''20200925-git''; parasites = [ "log4cl/syslog" "log4cl/test" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."alexandria" args."bordeaux-threads" args."stefil" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/log4cl/2019-10-07/log4cl-20191007-git.tgz''; - sha256 = ''0i4i4ahw13fzka8ixasv292y59ljyzl4i6k6gmkrhxxbm6cdq1na''; + url = ''http://beta.quicklisp.org/archive/log4cl/2020-09-25/log4cl-20200925-git.tgz''; + sha256 = ''1z98ly71hsbd46i0dqqv2s3cm9y8bi0pl3yg8a168vz629c6mdrf''; }; packageName = "log4cl"; @@ -20,11 +20,11 @@ rec { overrides = x: x; } /* (SYSTEM log4cl DESCRIPTION System lacks description SHA256 - 0i4i4ahw13fzka8ixasv292y59ljyzl4i6k6gmkrhxxbm6cdq1na URL - http://beta.quicklisp.org/archive/log4cl/2019-10-07/log4cl-20191007-git.tgz - MD5 11cdcd9da0ede86092886a055b186861 NAME log4cl FILENAME log4cl DEPS + 1z98ly71hsbd46i0dqqv2s3cm9y8bi0pl3yg8a168vz629c6mdrf URL + http://beta.quicklisp.org/archive/log4cl/2020-09-25/log4cl-20200925-git.tgz + MD5 80b347666af496142581e9e0c029d181 NAME log4cl FILENAME log4cl DEPS ((NAME alexandria FILENAME alexandria) (NAME bordeaux-threads FILENAME bordeaux-threads) (NAME stefil FILENAME stefil)) - DEPENDENCIES (alexandria bordeaux-threads stefil) VERSION 20191007-git + DEPENDENCIES (alexandria bordeaux-threads stefil) VERSION 20200925-git SIBLINGS (log4cl-examples log4slime) PARASITES (log4cl/syslog log4cl/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/lquery.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/lquery.nix index f64e9ee6a33..cf27f8ceaa3 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/lquery.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/lquery.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''lquery''; - version = ''20190710-git''; + version = ''20200715-git''; description = ''A library to allow jQuery-like HTML/DOM manipulation.''; deps = [ args."array-utils" args."clss" args."documentation-utils" args."form-fiddle" args."plump" args."trivial-indent" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/lquery/2019-07-10/lquery-20190710-git.tgz''; - sha256 = ''17kgp8xrygg2d7pfzqram3iv3rry91yfgjs1ym37ac8r5gqrmfsw''; + url = ''http://beta.quicklisp.org/archive/lquery/2020-07-15/lquery-20200715-git.tgz''; + sha256 = ''1akj9yzz71733yfbqq9jig0zkx8brphzh35d8zzic0469idd3rcd''; }; packageName = "lquery"; @@ -19,13 +19,13 @@ rec { } /* (SYSTEM lquery DESCRIPTION A library to allow jQuery-like HTML/DOM manipulation. SHA256 - 17kgp8xrygg2d7pfzqram3iv3rry91yfgjs1ym37ac8r5gqrmfsw URL - http://beta.quicklisp.org/archive/lquery/2019-07-10/lquery-20190710-git.tgz - MD5 987e9e505ff230c7bfc425bdf58fb717 NAME lquery FILENAME lquery DEPS + 1akj9yzz71733yfbqq9jig0zkx8brphzh35d8zzic0469idd3rcd URL + http://beta.quicklisp.org/archive/lquery/2020-07-15/lquery-20200715-git.tgz + MD5 38e282ac02c6a1ce9bc28bd9c1deee34 NAME lquery FILENAME lquery DEPS ((NAME array-utils FILENAME array-utils) (NAME clss FILENAME clss) (NAME documentation-utils FILENAME documentation-utils) (NAME form-fiddle FILENAME form-fiddle) (NAME plump FILENAME plump) (NAME trivial-indent FILENAME trivial-indent)) DEPENDENCIES (array-utils clss documentation-utils form-fiddle plump trivial-indent) - VERSION 20190710-git SIBLINGS (lquery-test) PARASITES NIL) */ + VERSION 20200715-git SIBLINGS (lquery-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/marshal.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/marshal.nix index 4f6842606b4..414dee98b71 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/marshal.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/marshal.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''marshal''; - version = ''cl-20180328-git''; + version = ''cl-20201016-git''; description = ''marshal: Simple (de)serialization of Lisp datastructures.''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-marshal/2018-03-28/cl-marshal-20180328-git.tgz''; - sha256 = ''09qmrq9lv9jlb2cnac80qd9b20swy598sfkhvngs3vcjl5xmmdhd''; + url = ''http://beta.quicklisp.org/archive/cl-marshal/2020-10-16/cl-marshal-20201016-git.tgz''; + sha256 = ''03j52yhgpc2myypgy07213l20rznxvf6m3sfbzy2wyapcmv7nxnz''; }; packageName = "marshal"; @@ -19,8 +19,8 @@ rec { } /* (SYSTEM marshal DESCRIPTION marshal: Simple (de)serialization of Lisp datastructures. SHA256 - 09qmrq9lv9jlb2cnac80qd9b20swy598sfkhvngs3vcjl5xmmdhd URL - http://beta.quicklisp.org/archive/cl-marshal/2018-03-28/cl-marshal-20180328-git.tgz - MD5 2d13dd2a276f1e63965498d10d9406ce NAME marshal FILENAME marshal DEPS NIL - DEPENDENCIES NIL VERSION cl-20180328-git SIBLINGS (marshal-tests) PARASITES + 03j52yhgpc2myypgy07213l20rznxvf6m3sfbzy2wyapcmv7nxnz URL + http://beta.quicklisp.org/archive/cl-marshal/2020-10-16/cl-marshal-20201016-git.tgz + MD5 243a2c3a5f1243ffb1639bca32a0aff0 NAME marshal FILENAME marshal DEPS NIL + DEPENDENCIES NIL VERSION cl-20201016-git SIBLINGS (marshal-tests) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/metabang-bind.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/metabang-bind.nix index 86242c09da3..6e0339bf9f9 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/metabang-bind.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/metabang-bind.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''metabang-bind''; - version = ''20191130-git''; + version = ''20200218-git''; description = ''Bind is a macro that generalizes multiple-value-bind, let, let*, destructuring-bind, structure and slot accessors, and a whole lot more.''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/metabang-bind/2019-11-30/metabang-bind-20191130-git.tgz''; - sha256 = ''0w4hk94wpfxxznl2xvasnwla7v9i8hrixa1b0r5ngph3n0hq48ci''; + url = ''http://beta.quicklisp.org/archive/metabang-bind/2020-02-18/metabang-bind-20200218-git.tgz''; + sha256 = ''0mfjzfsv8v6i9ahwldfzznl29i42cmh5srmpgq64ar1vp6bdn1hq''; }; packageName = "metabang-bind"; @@ -19,8 +19,8 @@ rec { } /* (SYSTEM metabang-bind DESCRIPTION Bind is a macro that generalizes multiple-value-bind, let, let*, destructuring-bind, structure and slot accessors, and a whole lot more. - SHA256 0w4hk94wpfxxznl2xvasnwla7v9i8hrixa1b0r5ngph3n0hq48ci URL - http://beta.quicklisp.org/archive/metabang-bind/2019-11-30/metabang-bind-20191130-git.tgz - MD5 b0845abb1eadb83e33e91c8d4ad88d2f NAME metabang-bind FILENAME - metabang-bind DEPS NIL DEPENDENCIES NIL VERSION 20191130-git SIBLINGS + SHA256 0mfjzfsv8v6i9ahwldfzznl29i42cmh5srmpgq64ar1vp6bdn1hq URL + http://beta.quicklisp.org/archive/metabang-bind/2020-02-18/metabang-bind-20200218-git.tgz + MD5 25ee72526862a9d794f7b0fc1826029e NAME metabang-bind FILENAME + metabang-bind DEPS NIL DEPENDENCIES NIL VERSION 20200218-git SIBLINGS (metabang-bind-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/metatilities-base.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/metatilities-base.nix index c45a3eff384..1cac2408837 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/metatilities-base.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/metatilities-base.nix @@ -1,15 +1,15 @@ -{ fetchurl, ... }: -{ +args @ { fetchurl, ... }: +rec { baseName = ''metatilities-base''; - version = ''20170403-git''; + version = ''20191227-git''; description = ''These are metabang.com's Common Lisp basic utilities.''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/metatilities-base/2017-04-03/metatilities-base-20170403-git.tgz''; - sha256 = ''14c1kzpg6ydnqca95rprzmhr09kk1jp2m8hpyn5vj2v68cvqm7br''; + url = ''http://beta.quicklisp.org/archive/metatilities-base/2019-12-27/metatilities-base-20191227-git.tgz''; + sha256 = ''1mal51p7mknya2ljcwl3wdjvnirw5vvzic6qcnci7qhmfrb1awil''; }; packageName = "metatilities-base"; @@ -19,8 +19,8 @@ } /* (SYSTEM metatilities-base DESCRIPTION These are metabang.com's Common Lisp basic utilities. SHA256 - 14c1kzpg6ydnqca95rprzmhr09kk1jp2m8hpyn5vj2v68cvqm7br URL - http://beta.quicklisp.org/archive/metatilities-base/2017-04-03/metatilities-base-20170403-git.tgz - MD5 8a3f429862a368e63b8fde731e9ab28a NAME metatilities-base FILENAME - metatilities-base DEPS NIL DEPENDENCIES NIL VERSION 20170403-git SIBLINGS + 1mal51p7mknya2ljcwl3wdjvnirw5vvzic6qcnci7qhmfrb1awil URL + http://beta.quicklisp.org/archive/metatilities-base/2019-12-27/metatilities-base-20191227-git.tgz + MD5 7968829ca353c4a42784a151317029f1 NAME metatilities-base FILENAME + metatilities-base DEPS NIL DEPENDENCIES NIL VERSION 20191227-git SIBLINGS (metatilities-base-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/mgl-pax.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/mgl-pax.nix new file mode 100644 index 00000000000..0271bf98cf7 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/mgl-pax.nix @@ -0,0 +1,43 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''mgl-pax''; + version = ''20201016-git''; + + parasites = [ "mgl-pax/test" ]; + + description = ''Exploratory programming tool and documentation + generator.''; + + deps = [ args."_3bmd" args."_3bmd-ext-code-blocks" args."alexandria" args."babel" args."bordeaux-threads" args."cl-fad" args."colorize" args."esrap" args."html-encode" args."ironclad" args."named-readtables" args."pythonic-string-reader" args."split-sequence" args."swank" args."trivial-features" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/mgl-pax/2020-10-16/mgl-pax-20201016-git.tgz''; + sha256 = ''0n48fw4a21sqy491bfi9fygrjl9psrryw00iha40dxy2ww86s6li''; + }; + + packageName = "mgl-pax"; + + asdFilesToKeep = ["mgl-pax.asd"]; + overrides = x: x; +} +/* (SYSTEM mgl-pax DESCRIPTION Exploratory programming tool and documentation + generator. + SHA256 0n48fw4a21sqy491bfi9fygrjl9psrryw00iha40dxy2ww86s6li URL + http://beta.quicklisp.org/archive/mgl-pax/2020-10-16/mgl-pax-20201016-git.tgz + MD5 131fc5e8d8b86dc769917e468f502727 NAME mgl-pax FILENAME mgl-pax DEPS + ((NAME 3bmd FILENAME _3bmd) + (NAME 3bmd-ext-code-blocks FILENAME _3bmd-ext-code-blocks) + (NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME cl-fad FILENAME cl-fad) (NAME colorize FILENAME colorize) + (NAME esrap FILENAME esrap) (NAME html-encode FILENAME html-encode) + (NAME ironclad FILENAME ironclad) + (NAME named-readtables FILENAME named-readtables) + (NAME pythonic-string-reader FILENAME pythonic-string-reader) + (NAME split-sequence FILENAME split-sequence) (NAME swank FILENAME swank) + (NAME trivial-features FILENAME trivial-features)) + DEPENDENCIES + (3bmd 3bmd-ext-code-blocks alexandria babel bordeaux-threads cl-fad + colorize esrap html-encode ironclad named-readtables + pythonic-string-reader split-sequence swank trivial-features) + VERSION 20201016-git SIBLINGS NIL PARASITES (mgl-pax/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/moptilities.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/moptilities.nix index adb1ad27c45..1f2dd20ee4b 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/moptilities.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/moptilities.nix @@ -1,5 +1,5 @@ args @ { fetchurl, ... }: -{ +rec { baseName = ''moptilities''; version = ''20170403-git''; diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/more-conditions.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/more-conditions.nix new file mode 100644 index 00000000000..9a014c41603 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/more-conditions.nix @@ -0,0 +1,34 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''more-conditions''; + version = ''20180831-git''; + + parasites = [ "more-conditions/test" ]; + + description = ''This system provides some generic condition classes in + conjunction with support functions and macros.''; + + deps = [ args."alexandria" args."closer-mop" args."fiveam" args."let-plus" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/more-conditions/2018-08-31/more-conditions-20180831-git.tgz''; + sha256 = ''0wa989kv3sl977g9szxkx52fdnww6aj2a9i77363f90iq02vj97x''; + }; + + packageName = "more-conditions"; + + asdFilesToKeep = ["more-conditions.asd"]; + overrides = x: x; +} +/* (SYSTEM more-conditions DESCRIPTION + This system provides some generic condition classes in + conjunction with support functions and macros. + SHA256 0wa989kv3sl977g9szxkx52fdnww6aj2a9i77363f90iq02vj97x URL + http://beta.quicklisp.org/archive/more-conditions/2018-08-31/more-conditions-20180831-git.tgz + MD5 c4797bd3c6c50fba02a6e8164ddafe28 NAME more-conditions FILENAME + more-conditions DEPS + ((NAME alexandria FILENAME alexandria) + (NAME closer-mop FILENAME closer-mop) (NAME fiveam FILENAME fiveam) + (NAME let-plus FILENAME let-plus)) + DEPENDENCIES (alexandria closer-mop fiveam let-plus) VERSION 20180831-git + SIBLINGS NIL PARASITES (more-conditions/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/mssql.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/mssql.nix deleted file mode 100644 index 974a63c1a73..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/mssql.nix +++ /dev/null @@ -1,30 +0,0 @@ -args @ { fetchurl, ... }: -{ - baseName = ''mssql''; - version = ''cl-20180228-git''; - - description = ''''; - - deps = [ args."alexandria" args."babel" args."cffi" args."garbage-pools" args."iterate" args."parse-number" args."trivial-features" ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-mssql/2018-02-28/cl-mssql-20180228-git.tgz''; - sha256 = ''1f9vq78xx4vv1898cigkf09mzimknc6ry6qrkys3xj167vyqhwm0''; - }; - - packageName = "mssql"; - - asdFilesToKeep = ["mssql.asd"]; - overrides = x: x; -} -/* (SYSTEM mssql DESCRIPTION NIL SHA256 - 1f9vq78xx4vv1898cigkf09mzimknc6ry6qrkys3xj167vyqhwm0 URL - http://beta.quicklisp.org/archive/cl-mssql/2018-02-28/cl-mssql-20180228-git.tgz - MD5 03a269f5221948393643432fc6de9d5d NAME mssql FILENAME mssql DEPS - ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) - (NAME cffi FILENAME cffi) (NAME garbage-pools FILENAME garbage-pools) - (NAME iterate FILENAME iterate) (NAME parse-number FILENAME parse-number) - (NAME trivial-features FILENAME trivial-features)) - DEPENDENCIES - (alexandria babel cffi garbage-pools iterate parse-number trivial-features) - VERSION cl-20180228-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/myway.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/myway.nix index 068d0eba69d..415b508713c 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/myway.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/myway.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''myway''; - version = ''20181018-git''; + version = ''20200325-git''; description = ''Sinatra-compatible routing library.''; deps = [ args."alexandria" args."babel" args."cl-ppcre" args."cl-utilities" args."map-set" args."quri" args."split-sequence" args."trivial-features" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/myway/2018-10-18/myway-20181018-git.tgz''; - sha256 = ''0ffd92mmir2k6i4771ppqvb3xhqlk2yh5znx7i391vq5ji3k5jij''; + url = ''http://beta.quicklisp.org/archive/myway/2020-03-25/myway-20200325-git.tgz''; + sha256 = ''07r0mq9n0gmm7n20mkpsnmjvcr4gj9nckpnh1c2mddrb3sag8n15''; }; packageName = "myway"; @@ -18,9 +18,9 @@ rec { overrides = x: x; } /* (SYSTEM myway DESCRIPTION Sinatra-compatible routing library. SHA256 - 0ffd92mmir2k6i4771ppqvb3xhqlk2yh5znx7i391vq5ji3k5jij URL - http://beta.quicklisp.org/archive/myway/2018-10-18/myway-20181018-git.tgz - MD5 88adecdaec89ceb262559d443512e545 NAME myway FILENAME myway DEPS + 07r0mq9n0gmm7n20mkpsnmjvcr4gj9nckpnh1c2mddrb3sag8n15 URL + http://beta.quicklisp.org/archive/myway/2020-03-25/myway-20200325-git.tgz + MD5 af1fe34c2106303504c7908b25c3b9ce NAME myway FILENAME myway DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME cl-ppcre FILENAME cl-ppcre) (NAME cl-utilities FILENAME cl-utilities) (NAME map-set FILENAME map-set) @@ -29,4 +29,4 @@ rec { DEPENDENCIES (alexandria babel cl-ppcre cl-utilities map-set quri split-sequence trivial-features) - VERSION 20181018-git SIBLINGS (myway-test) PARASITES NIL) */ + VERSION 20200325-git SIBLINGS (myway-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/named-readtables.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/named-readtables.nix index 82d06b1c93b..3504443d453 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/named-readtables.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/named-readtables.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''named-readtables''; - version = ''20180131-git''; + version = ''20200925-git''; parasites = [ "named-readtables/test" ]; @@ -11,8 +11,8 @@ rec { deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/named-readtables/2018-01-31/named-readtables-20180131-git.tgz''; - sha256 = ''1fhygm2q75m6my6appxmx097l7zlr3qxbgzbpa2mf9pr1qzwrgg5''; + url = ''http://beta.quicklisp.org/archive/named-readtables/2020-09-25/named-readtables-20200925-git.tgz''; + sha256 = ''0klbvv2syv8a8agacxdjrmmhibvhgfbxxwv6k4hx0ifk6n5iazxl''; }; packageName = "named-readtables"; @@ -23,8 +23,8 @@ rec { /* (SYSTEM named-readtables DESCRIPTION Library that creates a namespace for named readtable akin to the namespace of packages. - SHA256 1fhygm2q75m6my6appxmx097l7zlr3qxbgzbpa2mf9pr1qzwrgg5 URL - http://beta.quicklisp.org/archive/named-readtables/2018-01-31/named-readtables-20180131-git.tgz - MD5 46db18ba947dc0aba14c76471604448d NAME named-readtables FILENAME - named-readtables DEPS NIL DEPENDENCIES NIL VERSION 20180131-git SIBLINGS + SHA256 0klbvv2syv8a8agacxdjrmmhibvhgfbxxwv6k4hx0ifk6n5iazxl URL + http://beta.quicklisp.org/archive/named-readtables/2020-09-25/named-readtables-20200925-git.tgz + MD5 b17873ea600fb6847537c2c584761c29 NAME named-readtables FILENAME + named-readtables DEPS NIL DEPENDENCIES NIL VERSION 20200925-git SIBLINGS NIL PARASITES (named-readtables/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/net-telent-date.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/net-telent-date.nix new file mode 100644 index 00000000000..a9c49279563 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/net-telent-date.nix @@ -0,0 +1,25 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''net-telent-date''; + version = ''net-telent-date_0.42''; + + description = ''System lacks description''; + + deps = [ ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/net-telent-date/2010-10-06/net-telent-date_0.42.tgz''; + sha256 = ''06vdlddwi6kx999n1093chwgw0ksbys4j4w9i9zqvw768wxp4li1''; + }; + + packageName = "net-telent-date"; + + asdFilesToKeep = ["net-telent-date.asd"]; + overrides = x: x; +} +/* (SYSTEM net-telent-date DESCRIPTION System lacks description SHA256 + 06vdlddwi6kx999n1093chwgw0ksbys4j4w9i9zqvw768wxp4li1 URL + http://beta.quicklisp.org/archive/net-telent-date/2010-10-06/net-telent-date_0.42.tgz + MD5 6fedf40113b2462f7bd273d07950066b NAME net-telent-date FILENAME + net-telent-date DEPS NIL DEPENDENCIES NIL VERSION net-telent-date_0.42 + SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/nibbles.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/nibbles.nix index ea6adac9e9f..75ea9b55220 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/nibbles.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/nibbles.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''nibbles''; - version = ''20180831-git''; + version = ''20200925-git''; parasites = [ "nibbles/tests" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."rt" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/nibbles/2018-08-31/nibbles-20180831-git.tgz''; - sha256 = ''0z25f2z54pnz1s35prqvnl42bv0xqh50y94bds1jwfv0wvfq27la''; + url = ''http://beta.quicklisp.org/archive/nibbles/2020-09-25/nibbles-20200925-git.tgz''; + sha256 = ''14k9hg8kmzwcb9b5aiwqhimc0zmcs3xp8q29sck8zklf8ziqaqb4''; }; packageName = "nibbles"; @@ -21,8 +21,8 @@ rec { } /* (SYSTEM nibbles DESCRIPTION A library for accessing octet-addressed blocks of data in big- and little-endian orders - SHA256 0z25f2z54pnz1s35prqvnl42bv0xqh50y94bds1jwfv0wvfq27la URL - http://beta.quicklisp.org/archive/nibbles/2018-08-31/nibbles-20180831-git.tgz - MD5 4badf1f066a59c3c270d40be1116ecd5 NAME nibbles FILENAME nibbles DEPS - ((NAME rt FILENAME rt)) DEPENDENCIES (rt) VERSION 20180831-git SIBLINGS NIL + SHA256 14k9hg8kmzwcb9b5aiwqhimc0zmcs3xp8q29sck8zklf8ziqaqb4 URL + http://beta.quicklisp.org/archive/nibbles/2020-09-25/nibbles-20200925-git.tgz + MD5 2e6275cac23e28e24a25201d7d6e4ae2 NAME nibbles FILENAME nibbles DEPS + ((NAME rt FILENAME rt)) DEPENDENCIES (rt) VERSION 20200925-git SIBLINGS NIL PARASITES (nibbles/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/osicat.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/osicat.nix new file mode 100644 index 00000000000..cb05bef0a1c --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/osicat.nix @@ -0,0 +1,32 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''osicat''; + version = ''20200925-git''; + + parasites = [ "osicat/tests" ]; + + description = ''A lightweight operating system interface''; + + deps = [ args."alexandria" args."babel" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."rt" args."trivial-features" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/osicat/2020-09-25/osicat-20200925-git.tgz''; + sha256 = ''191ncd5arfx6i9cw3iny4a473wsrr3dpv2lwb9jr02p6qpmqwysk''; + }; + + packageName = "osicat"; + + asdFilesToKeep = ["osicat.asd"]; + overrides = x: x; +} +/* (SYSTEM osicat DESCRIPTION A lightweight operating system interface SHA256 + 191ncd5arfx6i9cw3iny4a473wsrr3dpv2lwb9jr02p6qpmqwysk URL + http://beta.quicklisp.org/archive/osicat/2020-09-25/osicat-20200925-git.tgz + MD5 5d0a254f2b8041a71fa6fa90eabaed70 NAME osicat FILENAME osicat DEPS + ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) + (NAME cffi FILENAME cffi) (NAME cffi-grovel FILENAME cffi-grovel) + (NAME cffi-toolchain FILENAME cffi-toolchain) (NAME rt FILENAME rt) + (NAME trivial-features FILENAME trivial-features)) + DEPENDENCIES + (alexandria babel cffi cffi-grovel cffi-toolchain rt trivial-features) + VERSION 20200925-git SIBLINGS NIL PARASITES (osicat/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/parser-combinators.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/parser-combinators.nix new file mode 100644 index 00000000000..5105ec99235 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/parser-combinators.nix @@ -0,0 +1,30 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''parser-combinators''; + version = ''cl-20131111-git''; + + description = ''An implementation of parser combinators for Common Lisp''; + + deps = [ args."alexandria" args."iterate" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/cl-parser-combinators/2013-11-11/cl-parser-combinators-20131111-git.tgz''; + sha256 = ''0wg1a7favbwqcxyqcy2zxi4l11qsp4ar9fvddmx960grf2d72lds''; + }; + + packageName = "parser-combinators"; + + asdFilesToKeep = ["parser-combinators.asd"]; + overrides = x: x; +} +/* (SYSTEM parser-combinators DESCRIPTION + An implementation of parser combinators for Common Lisp SHA256 + 0wg1a7favbwqcxyqcy2zxi4l11qsp4ar9fvddmx960grf2d72lds URL + http://beta.quicklisp.org/archive/cl-parser-combinators/2013-11-11/cl-parser-combinators-20131111-git.tgz + MD5 25ad9b1459901738a6394422a41b8fec NAME parser-combinators FILENAME + parser-combinators DEPS + ((NAME alexandria FILENAME alexandria) (NAME iterate FILENAME iterate)) + DEPENDENCIES (alexandria iterate) VERSION cl-20131111-git SIBLINGS + (parser-combinators-cl-ppcre parser-combinators-debug + parser-combinators-tests) + PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/parser_dot_common-rules.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/parser_dot_common-rules.nix new file mode 100644 index 00000000000..ee6532261c0 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/parser_dot_common-rules.nix @@ -0,0 +1,34 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''parser_dot_common-rules''; + version = ''20200715-git''; + + parasites = [ "parser.common-rules/test" ]; + + description = ''Provides common parsing rules that are useful in many grammars.''; + + deps = [ args."alexandria" args."anaphora" args."esrap" args."fiveam" args."let-plus" args."split-sequence" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/parser.common-rules/2020-07-15/parser.common-rules-20200715-git.tgz''; + sha256 = ''17nw0shhb8079b26ldwpfxggkzs6ysfqm4s4nr1rfhba9mkvxdxy''; + }; + + packageName = "parser.common-rules"; + + asdFilesToKeep = ["parser.common-rules.asd"]; + overrides = x: x; +} +/* (SYSTEM parser.common-rules DESCRIPTION + Provides common parsing rules that are useful in many grammars. SHA256 + 17nw0shhb8079b26ldwpfxggkzs6ysfqm4s4nr1rfhba9mkvxdxy URL + http://beta.quicklisp.org/archive/parser.common-rules/2020-07-15/parser.common-rules-20200715-git.tgz + MD5 6391d962ae6fc13cc57312de013504c5 NAME parser.common-rules FILENAME + parser_dot_common-rules DEPS + ((NAME alexandria FILENAME alexandria) (NAME anaphora FILENAME anaphora) + (NAME esrap FILENAME esrap) (NAME fiveam FILENAME fiveam) + (NAME let-plus FILENAME let-plus) + (NAME split-sequence FILENAME split-sequence)) + DEPENDENCIES (alexandria anaphora esrap fiveam let-plus split-sequence) + VERSION 20200715-git SIBLINGS (parser.common-rules.operators) PARASITES + (parser.common-rules/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/pgloader.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/pgloader.nix deleted file mode 100644 index f0b5fb23d66..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/pgloader.nix +++ /dev/null @@ -1,76 +0,0 @@ -args @ { fetchurl, ... }: -{ - baseName = ''pgloader''; - version = ''v3.4.1''; - - description = ''Load data into PostgreSQL''; - - deps = [ args."abnf" args."alexandria" args."anaphora" args."asdf-finalizers" args."asdf-system-connections" args."babel" args."bordeaux-threads" args."cffi" args."chipz" args."chunga" args."cl_plus_ssl" args."cl-base64" args."cl-containers" args."cl-csv" args."cl-fad" args."cl-interpol" args."cl-log" args."cl-markdown" args."cl-postgres" args."cl-ppcre" args."cl-unicode" args."cl-utilities" args."closer-mop" args."command-line-arguments" args."db3" args."drakma" args."dynamic-classes" args."esrap" args."flexi-streams" args."garbage-pools" args."ieee-floats" args."ironclad" args."iterate" args."ixf" args."list-of" args."local-time" args."lparallel" args."md5" args."metabang-bind" args."metatilities-base" args."mssql" args."nibbles" args."parse-number" args."postmodern" args."puri" args."py-configparser" args."qmynd" args."quri" args."s-sql" args."salza2" args."simple-date" args."split-sequence" args."sqlite" args."trivial-backtrace" args."trivial-features" args."trivial-garbage" args."trivial-gray-streams" args."trivial-utf-8" args."uiop" args."usocket" args."uuid" ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/pgloader/2017-08-30/pgloader-v3.4.1.tgz''; - sha256 = ''1z6p7dz1ir9cg4gl1vkvbc1f7pv1yfv1jgwjkw29v57fdg4faz9v''; - }; - - packageName = "pgloader"; - - asdFilesToKeep = ["pgloader.asd"]; - overrides = x: x; -} -/* (SYSTEM pgloader DESCRIPTION Load data into PostgreSQL SHA256 - 1z6p7dz1ir9cg4gl1vkvbc1f7pv1yfv1jgwjkw29v57fdg4faz9v URL - http://beta.quicklisp.org/archive/pgloader/2017-08-30/pgloader-v3.4.1.tgz - MD5 6741f8e7d2d416942d5c4a1971576d33 NAME pgloader FILENAME pgloader DEPS - ((NAME abnf FILENAME abnf) (NAME alexandria FILENAME alexandria) - (NAME anaphora FILENAME anaphora) - (NAME asdf-finalizers FILENAME asdf-finalizers) - (NAME asdf-system-connections FILENAME asdf-system-connections) - (NAME babel FILENAME babel) - (NAME bordeaux-threads FILENAME bordeaux-threads) - (NAME cffi FILENAME cffi) (NAME chipz FILENAME chipz) - (NAME chunga FILENAME chunga) (NAME cl+ssl FILENAME cl_plus_ssl) - (NAME cl-base64 FILENAME cl-base64) - (NAME cl-containers FILENAME cl-containers) (NAME cl-csv FILENAME cl-csv) - (NAME cl-fad FILENAME cl-fad) (NAME cl-interpol FILENAME cl-interpol) - (NAME cl-log FILENAME cl-log) (NAME cl-markdown FILENAME cl-markdown) - (NAME cl-postgres FILENAME cl-postgres) (NAME cl-ppcre FILENAME cl-ppcre) - (NAME cl-unicode FILENAME cl-unicode) - (NAME cl-utilities FILENAME cl-utilities) - (NAME closer-mop FILENAME closer-mop) - (NAME command-line-arguments FILENAME command-line-arguments) - (NAME db3 FILENAME db3) (NAME drakma FILENAME drakma) - (NAME dynamic-classes FILENAME dynamic-classes) - (NAME esrap FILENAME esrap) (NAME flexi-streams FILENAME flexi-streams) - (NAME garbage-pools FILENAME garbage-pools) - (NAME ieee-floats FILENAME ieee-floats) (NAME ironclad FILENAME ironclad) - (NAME iterate FILENAME iterate) (NAME ixf FILENAME ixf) - (NAME list-of FILENAME list-of) (NAME local-time FILENAME local-time) - (NAME lparallel FILENAME lparallel) (NAME md5 FILENAME md5) - (NAME metabang-bind FILENAME metabang-bind) - (NAME metatilities-base FILENAME metatilities-base) - (NAME mssql FILENAME mssql) (NAME nibbles FILENAME nibbles) - (NAME parse-number FILENAME parse-number) - (NAME postmodern FILENAME postmodern) (NAME puri FILENAME puri) - (NAME py-configparser FILENAME py-configparser) - (NAME qmynd FILENAME qmynd) (NAME quri FILENAME quri) - (NAME s-sql FILENAME s-sql) (NAME salza2 FILENAME salza2) - (NAME simple-date FILENAME simple-date) - (NAME split-sequence FILENAME split-sequence) - (NAME sqlite FILENAME sqlite) - (NAME trivial-backtrace FILENAME trivial-backtrace) - (NAME trivial-features FILENAME trivial-features) - (NAME trivial-garbage FILENAME trivial-garbage) - (NAME trivial-gray-streams FILENAME trivial-gray-streams) - (NAME trivial-utf-8 FILENAME trivial-utf-8) (NAME uiop FILENAME uiop) - (NAME usocket FILENAME usocket) (NAME uuid FILENAME uuid)) - DEPENDENCIES - (abnf alexandria anaphora asdf-finalizers asdf-system-connections babel - bordeaux-threads cffi chipz chunga cl+ssl cl-base64 cl-containers cl-csv - cl-fad cl-interpol cl-log cl-markdown cl-postgres cl-ppcre cl-unicode - cl-utilities closer-mop command-line-arguments db3 drakma dynamic-classes - esrap flexi-streams garbage-pools ieee-floats ironclad iterate ixf list-of - local-time lparallel md5 metabang-bind metatilities-base mssql nibbles - parse-number postmodern puri py-configparser qmynd quri s-sql salza2 - simple-date split-sequence sqlite trivial-backtrace trivial-features - trivial-garbage trivial-gray-streams trivial-utf-8 uiop usocket uuid) - VERSION v3.4.1 SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/plump-dom.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/plump-dom.nix deleted file mode 100644 index e4fd9f0c4df..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/plump-dom.nix +++ /dev/null @@ -1,26 +0,0 @@ -args @ { fetchurl, ... }: -{ - baseName = ''plump-dom''; - version = ''plump-20170725-git''; - - description = ''A DOM for use with the Plump parser.''; - - deps = [ args."array-utils" ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/plump/2017-07-25/plump-20170725-git.tgz''; - sha256 = ''118ashy1sqi666k18fqjkkzzqcak1f1aq93vm2hiadbdvrwn9s72''; - }; - - packageName = "plump-dom"; - - asdFilesToKeep = ["plump-dom.asd"]; - overrides = x: x; -} -/* (SYSTEM plump-dom DESCRIPTION A DOM for use with the Plump parser. SHA256 - 118ashy1sqi666k18fqjkkzzqcak1f1aq93vm2hiadbdvrwn9s72 URL - http://beta.quicklisp.org/archive/plump/2017-07-25/plump-20170725-git.tgz - MD5 e5e92dd177711a14753ee86961710458 NAME plump-dom FILENAME plump-dom DEPS - ((NAME array-utils FILENAME array-utils)) DEPENDENCIES (array-utils) - VERSION plump-20170725-git SIBLINGS (plump-lexer plump-parser plump) - PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/plump-lexer.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/plump-lexer.nix deleted file mode 100644 index 16cd9d5f062..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/plump-lexer.nix +++ /dev/null @@ -1,26 +0,0 @@ -{ fetchurl, ... }: -{ - baseName = ''plump-lexer''; - version = ''plump-20170725-git''; - - description = ''A very simple toolkit to help with lexing used mainly in Plump.''; - - deps = [ ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/plump/2017-07-25/plump-20170725-git.tgz''; - sha256 = ''118ashy1sqi666k18fqjkkzzqcak1f1aq93vm2hiadbdvrwn9s72''; - }; - - packageName = "plump-lexer"; - - asdFilesToKeep = ["plump-lexer.asd"]; - overrides = x: x; -} -/* (SYSTEM plump-lexer DESCRIPTION - A very simple toolkit to help with lexing used mainly in Plump. SHA256 - 118ashy1sqi666k18fqjkkzzqcak1f1aq93vm2hiadbdvrwn9s72 URL - http://beta.quicklisp.org/archive/plump/2017-07-25/plump-20170725-git.tgz - MD5 e5e92dd177711a14753ee86961710458 NAME plump-lexer FILENAME plump-lexer - DEPS NIL DEPENDENCIES NIL VERSION plump-20170725-git SIBLINGS - (plump-dom plump-parser plump) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/plump-parser.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/plump-parser.nix deleted file mode 100644 index cb06b039abd..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/plump-parser.nix +++ /dev/null @@ -1,30 +0,0 @@ -args @ { fetchurl, ... }: -{ - baseName = ''plump-parser''; - version = ''plump-20170725-git''; - - description = ''Plump's core parser component.''; - - deps = [ args."array-utils" args."plump-dom" args."plump-lexer" args."trivial-indent" ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/plump/2017-07-25/plump-20170725-git.tgz''; - sha256 = ''118ashy1sqi666k18fqjkkzzqcak1f1aq93vm2hiadbdvrwn9s72''; - }; - - packageName = "plump-parser"; - - asdFilesToKeep = ["plump-parser.asd"]; - overrides = x: x; -} -/* (SYSTEM plump-parser DESCRIPTION Plump's core parser component. SHA256 - 118ashy1sqi666k18fqjkkzzqcak1f1aq93vm2hiadbdvrwn9s72 URL - http://beta.quicklisp.org/archive/plump/2017-07-25/plump-20170725-git.tgz - MD5 e5e92dd177711a14753ee86961710458 NAME plump-parser FILENAME - plump-parser DEPS - ((NAME array-utils FILENAME array-utils) - (NAME plump-dom FILENAME plump-dom) - (NAME plump-lexer FILENAME plump-lexer) - (NAME trivial-indent FILENAME trivial-indent)) - DEPENDENCIES (array-utils plump-dom plump-lexer trivial-indent) VERSION - plump-20170725-git SIBLINGS (plump-dom plump-lexer plump) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/plump.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/plump.nix index 8757c704c8f..5490b882c81 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/plump.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/plump.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''plump''; - version = ''20190710-git''; + version = ''20200427-git''; description = ''An XML / XHTML / HTML parser that aims to be as lenient as possible.''; deps = [ args."array-utils" args."documentation-utils" args."trivial-indent" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/plump/2019-07-10/plump-20190710-git.tgz''; - sha256 = ''1in8c86a1ss8h02bsr3yb0clqgbvqh0bh5gy4y01yfckixbxh5fi''; + url = ''http://beta.quicklisp.org/archive/plump/2020-04-27/plump-20200427-git.tgz''; + sha256 = ''0l5bi503djjkhrih94h5jbihlm60h267qm2ycq9m9fldp4fjrjic''; }; packageName = "plump"; @@ -19,11 +19,11 @@ rec { } /* (SYSTEM plump DESCRIPTION An XML / XHTML / HTML parser that aims to be as lenient as possible. SHA256 - 1in8c86a1ss8h02bsr3yb0clqgbvqh0bh5gy4y01yfckixbxh5fi URL - http://beta.quicklisp.org/archive/plump/2019-07-10/plump-20190710-git.tgz - MD5 e3276779e368758274156c9477f0b22a NAME plump FILENAME plump DEPS + 0l5bi503djjkhrih94h5jbihlm60h267qm2ycq9m9fldp4fjrjic URL + http://beta.quicklisp.org/archive/plump/2020-04-27/plump-20200427-git.tgz + MD5 f9244ce58ee5cf5044092369e534f3b7 NAME plump FILENAME plump DEPS ((NAME array-utils FILENAME array-utils) (NAME documentation-utils FILENAME documentation-utils) (NAME trivial-indent FILENAME trivial-indent)) DEPENDENCIES (array-utils documentation-utils trivial-indent) VERSION - 20190710-git SIBLINGS (plump-dom plump-lexer plump-parser) PARASITES NIL) */ + 20200427-git SIBLINGS (plump-dom plump-lexer plump-parser) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/postmodern.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/postmodern.nix index ed09e3805c0..7dc27566bca 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/postmodern.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/postmodern.nix @@ -1,17 +1,17 @@ args @ { fetchurl, ... }: -{ +rec { baseName = ''postmodern''; - version = ''20180430-git''; + version = ''20201016-git''; parasites = [ "postmodern/tests" ]; description = ''PostgreSQL programming API''; - deps = [ args."alexandria" args."bordeaux-threads" args."cl-postgres" args."cl-postgres_slash_tests" args."closer-mop" args."fiveam" args."md5" args."s-sql" args."s-sql_slash_tests" args."simple-date" args."simple-date_slash_postgres-glue" args."split-sequence" args."usocket" ]; + deps = [ args."alexandria" args."bordeaux-threads" args."cl-base64" args."cl-postgres" args."cl-postgres_slash_tests" args."cl-ppcre" args."cl-unicode" args."closer-mop" args."fiveam" args."flexi-streams" args."global-vars" args."ironclad" args."md5" args."s-sql" args."s-sql_slash_tests" args."simple-date" args."simple-date_slash_postgres-glue" args."split-sequence" args."uax-15" args."usocket" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/postmodern/2018-04-30/postmodern-20180430-git.tgz''; - sha256 = ''0b6w8f5ihbk036v1fclyskns615xhnib9q3cjn0ql6r6sk3nca7f''; + url = ''http://beta.quicklisp.org/archive/postmodern/2020-10-16/postmodern-20201016-git.tgz''; + sha256 = ''1svaiksbqcaq8sh7q6sj9kzazdfl360zqr2nzhwbgy4xnaj4vf3n''; }; packageName = "postmodern"; @@ -20,24 +20,29 @@ args @ { fetchurl, ... }: overrides = x: x; } /* (SYSTEM postmodern DESCRIPTION PostgreSQL programming API SHA256 - 0b6w8f5ihbk036v1fclyskns615xhnib9q3cjn0ql6r6sk3nca7f URL - http://beta.quicklisp.org/archive/postmodern/2018-04-30/postmodern-20180430-git.tgz - MD5 9ca2a4ccf4ea7dbcd14d69cb355a8214 NAME postmodern FILENAME postmodern + 1svaiksbqcaq8sh7q6sj9kzazdfl360zqr2nzhwbgy4xnaj4vf3n URL + http://beta.quicklisp.org/archive/postmodern/2020-10-16/postmodern-20201016-git.tgz + MD5 f61e827d7e7ba023f6fbc7c2667de4c8 NAME postmodern FILENAME postmodern DEPS ((NAME alexandria FILENAME alexandria) (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME cl-base64 FILENAME cl-base64) (NAME cl-postgres FILENAME cl-postgres) (NAME cl-postgres/tests FILENAME cl-postgres_slash_tests) + (NAME cl-ppcre FILENAME cl-ppcre) (NAME cl-unicode FILENAME cl-unicode) (NAME closer-mop FILENAME closer-mop) (NAME fiveam FILENAME fiveam) + (NAME flexi-streams FILENAME flexi-streams) + (NAME global-vars FILENAME global-vars) (NAME ironclad FILENAME ironclad) (NAME md5 FILENAME md5) (NAME s-sql FILENAME s-sql) (NAME s-sql/tests FILENAME s-sql_slash_tests) (NAME simple-date FILENAME simple-date) (NAME simple-date/postgres-glue FILENAME simple-date_slash_postgres-glue) (NAME split-sequence FILENAME split-sequence) - (NAME usocket FILENAME usocket)) + (NAME uax-15 FILENAME uax-15) (NAME usocket FILENAME usocket)) DEPENDENCIES - (alexandria bordeaux-threads cl-postgres cl-postgres/tests closer-mop - fiveam md5 s-sql s-sql/tests simple-date simple-date/postgres-glue - split-sequence usocket) - VERSION 20180430-git SIBLINGS (cl-postgres s-sql simple-date) PARASITES + (alexandria bordeaux-threads cl-base64 cl-postgres cl-postgres/tests + cl-ppcre cl-unicode closer-mop fiveam flexi-streams global-vars ironclad + md5 s-sql s-sql/tests simple-date simple-date/postgres-glue split-sequence + uax-15 usocket) + VERSION 20201016-git SIBLINGS (cl-postgres s-sql simple-date) PARASITES (postmodern/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/prove-asdf.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/prove-asdf.nix index 583b30f9769..21babe8f015 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/prove-asdf.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/prove-asdf.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''prove-asdf''; - version = ''prove-20171130-git''; + version = ''prove-20200218-git''; description = ''System lacks description''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/prove/2017-11-30/prove-20171130-git.tgz''; - sha256 = ''13dmnnlk3r9fxxcvk6sqq8m0ifv9y80zgp1wg63nv1ykwdi7kyar''; + url = ''http://beta.quicklisp.org/archive/prove/2020-02-18/prove-20200218-git.tgz''; + sha256 = ''1sv3zyam9sdmyis5lyv0khvw82q7bcpsycpj9b3bsv9isb4j30zn''; }; packageName = "prove-asdf"; @@ -18,8 +18,8 @@ rec { overrides = x: x; } /* (SYSTEM prove-asdf DESCRIPTION System lacks description SHA256 - 13dmnnlk3r9fxxcvk6sqq8m0ifv9y80zgp1wg63nv1ykwdi7kyar URL - http://beta.quicklisp.org/archive/prove/2017-11-30/prove-20171130-git.tgz - MD5 630df4367537f799570be40242f8ed52 NAME prove-asdf FILENAME prove-asdf - DEPS NIL DEPENDENCIES NIL VERSION prove-20171130-git SIBLINGS + 1sv3zyam9sdmyis5lyv0khvw82q7bcpsycpj9b3bsv9isb4j30zn URL + http://beta.quicklisp.org/archive/prove/2020-02-18/prove-20200218-git.tgz + MD5 85780b65e84c17a78d658364b8c4d11b NAME prove-asdf FILENAME prove-asdf + DEPS NIL DEPENDENCIES NIL VERSION prove-20200218-git SIBLINGS (cl-test-more prove-test prove) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/prove.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/prove.nix index 065c81e11a6..c3aa1dcaafe 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/prove.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/prove.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''prove''; - version = ''20171130-git''; + version = ''20200218-git''; description = ''System lacks description''; - deps = [ args."alexandria" args."anaphora" args."cl-ansi-text" args."cl-colors" args."cl-ppcre" args."let-plus" args."uiop" ]; + deps = [ args."alexandria" args."anaphora" args."cl-ansi-text" args."cl-colors" args."cl-colors2" args."cl-ppcre" args."let-plus" args."uiop" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/prove/2017-11-30/prove-20171130-git.tgz''; - sha256 = ''13dmnnlk3r9fxxcvk6sqq8m0ifv9y80zgp1wg63nv1ykwdi7kyar''; + url = ''http://beta.quicklisp.org/archive/prove/2020-02-18/prove-20200218-git.tgz''; + sha256 = ''1sv3zyam9sdmyis5lyv0khvw82q7bcpsycpj9b3bsv9isb4j30zn''; }; packageName = "prove"; @@ -18,13 +18,16 @@ rec { overrides = x: x; } /* (SYSTEM prove DESCRIPTION System lacks description SHA256 - 13dmnnlk3r9fxxcvk6sqq8m0ifv9y80zgp1wg63nv1ykwdi7kyar URL - http://beta.quicklisp.org/archive/prove/2017-11-30/prove-20171130-git.tgz - MD5 630df4367537f799570be40242f8ed52 NAME prove FILENAME prove DEPS + 1sv3zyam9sdmyis5lyv0khvw82q7bcpsycpj9b3bsv9isb4j30zn URL + http://beta.quicklisp.org/archive/prove/2020-02-18/prove-20200218-git.tgz + MD5 85780b65e84c17a78d658364b8c4d11b NAME prove FILENAME prove DEPS ((NAME alexandria FILENAME alexandria) (NAME anaphora FILENAME anaphora) (NAME cl-ansi-text FILENAME cl-ansi-text) - (NAME cl-colors FILENAME cl-colors) (NAME cl-ppcre FILENAME cl-ppcre) - (NAME let-plus FILENAME let-plus) (NAME uiop FILENAME uiop)) + (NAME cl-colors FILENAME cl-colors) (NAME cl-colors2 FILENAME cl-colors2) + (NAME cl-ppcre FILENAME cl-ppcre) (NAME let-plus FILENAME let-plus) + (NAME uiop FILENAME uiop)) DEPENDENCIES - (alexandria anaphora cl-ansi-text cl-colors cl-ppcre let-plus uiop) VERSION - 20171130-git SIBLINGS (cl-test-more prove-asdf prove-test) PARASITES NIL) */ + (alexandria anaphora cl-ansi-text cl-colors cl-colors2 cl-ppcre let-plus + uiop) + VERSION 20200218-git SIBLINGS (cl-test-more prove-asdf prove-test) + PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/puri.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/puri.nix index 4f694678393..e45802c194d 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/puri.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/puri.nix @@ -1,17 +1,17 @@ args @ { fetchurl, ... }: rec { baseName = ''puri''; - version = ''20180228-git''; + version = ''20201016-git''; - parasites = [ "puri-tests" ]; + parasites = [ "puri/test" ]; description = ''Portable Universal Resource Indentifier Library''; deps = [ args."ptester" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/puri/2018-02-28/puri-20180228-git.tgz''; - sha256 = ''1s4r5adrjy5asry45xbcbklxhdjydvf6n55z897nvyw33bigrnbz''; + url = ''http://beta.quicklisp.org/archive/puri/2020-10-16/puri-20201016-git.tgz''; + sha256 = ''16h7gip6d0564s9yba3jg0rjzndmysv531hcrngvi3j3sandjfzx''; }; packageName = "puri"; @@ -20,8 +20,8 @@ rec { overrides = x: x; } /* (SYSTEM puri DESCRIPTION Portable Universal Resource Indentifier Library - SHA256 1s4r5adrjy5asry45xbcbklxhdjydvf6n55z897nvyw33bigrnbz URL - http://beta.quicklisp.org/archive/puri/2018-02-28/puri-20180228-git.tgz MD5 - 0c43ad5d862ed0d18ef84d8e2a42f67f NAME puri FILENAME puri DEPS + SHA256 16h7gip6d0564s9yba3jg0rjzndmysv531hcrngvi3j3sandjfzx URL + http://beta.quicklisp.org/archive/puri/2020-10-16/puri-20201016-git.tgz MD5 + 890c61df1d7204b2d681bf146c43e711 NAME puri FILENAME puri DEPS ((NAME ptester FILENAME ptester)) DEPENDENCIES (ptester) VERSION - 20180228-git SIBLINGS NIL PARASITES (puri-tests)) */ + 20201016-git SIBLINGS NIL PARASITES (puri/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/py-configparser.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/py-configparser.nix deleted file mode 100644 index 741929484d8..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/py-configparser.nix +++ /dev/null @@ -1,26 +0,0 @@ -args @ { fetchurl, ... }: -{ - baseName = ''py-configparser''; - version = ''20170830-svn''; - - description = ''Common Lisp implementation of the Python ConfigParser module''; - - deps = [ args."parse-number" ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/py-configparser/2017-08-30/py-configparser-20170830-svn.tgz''; - sha256 = ''0lf062m6nrq61cxafi7jyfh3ianml1qqqzdfd5pm1wzakl2jqp9j''; - }; - - packageName = "py-configparser"; - - asdFilesToKeep = ["py-configparser.asd"]; - overrides = x: x; -} -/* (SYSTEM py-configparser DESCRIPTION - Common Lisp implementation of the Python ConfigParser module SHA256 - 0lf062m6nrq61cxafi7jyfh3ianml1qqqzdfd5pm1wzakl2jqp9j URL - http://beta.quicklisp.org/archive/py-configparser/2017-08-30/py-configparser-20170830-svn.tgz - MD5 b6a9fc2a9c70760d6683cafe656f9e90 NAME py-configparser FILENAME - py-configparser DEPS ((NAME parse-number FILENAME parse-number)) - DEPENDENCIES (parse-number) VERSION 20170830-svn SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/pythonic-string-reader.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/pythonic-string-reader.nix new file mode 100644 index 00000000000..ae810d34790 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/pythonic-string-reader.nix @@ -0,0 +1,29 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''pythonic-string-reader''; + version = ''20180711-git''; + + description = ''A simple and unintrusive read table modification that allows for +simple string literal definition that doesn't require escaping characters.''; + + deps = [ args."named-readtables" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/pythonic-string-reader/2018-07-11/pythonic-string-reader-20180711-git.tgz''; + sha256 = ''0gr6sbkmfwca9r0xa5vczjm4s9psbrqy5hvijkp5g42b0b7x5myx''; + }; + + packageName = "pythonic-string-reader"; + + asdFilesToKeep = ["pythonic-string-reader.asd"]; + overrides = x: x; +} +/* (SYSTEM pythonic-string-reader DESCRIPTION + A simple and unintrusive read table modification that allows for +simple string literal definition that doesn't require escaping characters. + SHA256 0gr6sbkmfwca9r0xa5vczjm4s9psbrqy5hvijkp5g42b0b7x5myx URL + http://beta.quicklisp.org/archive/pythonic-string-reader/2018-07-11/pythonic-string-reader-20180711-git.tgz + MD5 8156636895b1148fad6e7bcedeb6b556 NAME pythonic-string-reader FILENAME + pythonic-string-reader DEPS + ((NAME named-readtables FILENAME named-readtables)) DEPENDENCIES + (named-readtables) VERSION 20180711-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/qmynd.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/qmynd.nix deleted file mode 100644 index 03d96005935..00000000000 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/qmynd.nix +++ /dev/null @@ -1,42 +0,0 @@ -args @ { fetchurl, ... }: -{ - baseName = ''qmynd''; - version = ''20180131-git''; - - description = ''MySQL Native Driver''; - - deps = [ args."alexandria" args."asdf-finalizers" args."babel" args."bordeaux-threads" args."cffi" args."chipz" args."cl_plus_ssl" args."flexi-streams" args."ironclad" args."list-of" args."nibbles" args."salza2" args."split-sequence" args."trivial-features" args."trivial-garbage" args."trivial-gray-streams" args."usocket" ]; - - src = fetchurl { - url = ''http://beta.quicklisp.org/archive/qmynd/2018-01-31/qmynd-20180131-git.tgz''; - sha256 = ''1ripapyrpzp36wsb2xf8w63nf0cjc13xh6xx296p8wgi01jwm61c''; - }; - - packageName = "qmynd"; - - asdFilesToKeep = ["qmynd.asd"]; - overrides = x: x; -} -/* (SYSTEM qmynd DESCRIPTION MySQL Native Driver SHA256 - 1ripapyrpzp36wsb2xf8w63nf0cjc13xh6xx296p8wgi01jwm61c URL - http://beta.quicklisp.org/archive/qmynd/2018-01-31/qmynd-20180131-git.tgz - MD5 60177d28b1945234fd72760007194b3e NAME qmynd FILENAME qmynd DEPS - ((NAME alexandria FILENAME alexandria) - (NAME asdf-finalizers FILENAME asdf-finalizers) - (NAME babel FILENAME babel) - (NAME bordeaux-threads FILENAME bordeaux-threads) - (NAME cffi FILENAME cffi) (NAME chipz FILENAME chipz) - (NAME cl+ssl FILENAME cl_plus_ssl) - (NAME flexi-streams FILENAME flexi-streams) - (NAME ironclad FILENAME ironclad) (NAME list-of FILENAME list-of) - (NAME nibbles FILENAME nibbles) (NAME salza2 FILENAME salza2) - (NAME split-sequence FILENAME split-sequence) - (NAME trivial-features FILENAME trivial-features) - (NAME trivial-garbage FILENAME trivial-garbage) - (NAME trivial-gray-streams FILENAME trivial-gray-streams) - (NAME usocket FILENAME usocket)) - DEPENDENCIES - (alexandria asdf-finalizers babel bordeaux-threads cffi chipz cl+ssl - flexi-streams ironclad list-of nibbles salza2 split-sequence - trivial-features trivial-garbage trivial-gray-streams usocket) - VERSION 20180131-git SIBLINGS (qmynd-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/query-fs.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/query-fs.nix index 3666dda9bf8..06957e45f81 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/query-fs.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/query-fs.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''query-fs''; - version = ''20190521-git''; + version = ''20200610-git''; description = ''High-level virtual FS using CL-Fuse-Meta-FS to represent results of queries''; deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."cl-fuse" args."cl-fuse-meta-fs" args."cl-ppcre" args."cl-utilities" args."command-line-arguments" args."iterate" args."pcall" args."pcall-queue" args."trivial-backtrace" args."trivial-features" args."trivial-utf-8" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/query-fs/2019-05-21/query-fs-20190521-git.tgz''; - sha256 = ''1zz917yjjnjx09cl27793056262nz1jhikdaj1mxhgzm3w6ywf39''; + url = ''http://beta.quicklisp.org/archive/query-fs/2020-06-10/query-fs-20200610-git.tgz''; + sha256 = ''1kcq2xs5dqwbhapknrynanwqn3c9h4cpi7hf362il2p6v6y4r413''; }; packageName = "query-fs"; @@ -19,9 +19,9 @@ rec { } /* (SYSTEM query-fs DESCRIPTION High-level virtual FS using CL-Fuse-Meta-FS to represent results of queries - SHA256 1zz917yjjnjx09cl27793056262nz1jhikdaj1mxhgzm3w6ywf39 URL - http://beta.quicklisp.org/archive/query-fs/2019-05-21/query-fs-20190521-git.tgz - MD5 1108c91b69007c6ab35b42d70d4dd7a2 NAME query-fs FILENAME query-fs DEPS + SHA256 1kcq2xs5dqwbhapknrynanwqn3c9h4cpi7hf362il2p6v6y4r413 URL + http://beta.quicklisp.org/archive/query-fs/2020-06-10/query-fs-20200610-git.tgz + MD5 d30cbd09a2f326c95057b2c6537d5cdb NAME query-fs FILENAME query-fs DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME bordeaux-threads FILENAME bordeaux-threads) (NAME cffi FILENAME cffi) (NAME cffi-grovel FILENAME cffi-grovel) @@ -40,4 +40,4 @@ rec { (alexandria babel bordeaux-threads cffi cffi-grovel cffi-toolchain cl-fuse cl-fuse-meta-fs cl-ppcre cl-utilities command-line-arguments iterate pcall pcall-queue trivial-backtrace trivial-features trivial-utf-8) - VERSION 20190521-git SIBLINGS NIL PARASITES NIL) */ + VERSION 20200610-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/quri.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/quri.nix index 08d83d1bb2c..1972f6b8d4a 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/quri.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/quri.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''quri''; - version = ''20191130-git''; + version = ''20200610-git''; description = ''Yet another URI library for Common Lisp''; deps = [ args."alexandria" args."babel" args."cl-utilities" args."split-sequence" args."trivial-features" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/quri/2019-11-30/quri-20191130-git.tgz''; - sha256 = ''00j71xf4c81w4lby22w2nm508djj36z4v4g3k5qsw16ylf92pkbs''; + url = ''http://beta.quicklisp.org/archive/quri/2020-06-10/quri-20200610-git.tgz''; + sha256 = ''1qv8x1m6m70jczvydfq9ws5zw3jw6y74s607vfrqaf0ck5rrwsk6''; }; packageName = "quri"; @@ -18,13 +18,13 @@ rec { overrides = x: x; } /* (SYSTEM quri DESCRIPTION Yet another URI library for Common Lisp SHA256 - 00j71xf4c81w4lby22w2nm508djj36z4v4g3k5qsw16ylf92pkbs URL - http://beta.quicklisp.org/archive/quri/2019-11-30/quri-20191130-git.tgz MD5 - 4a3e8d2ebe459ea731738650c2c5bf56 NAME quri FILENAME quri DEPS + 1qv8x1m6m70jczvydfq9ws5zw3jw6y74s607vfrqaf0ck5rrwsk6 URL + http://beta.quicklisp.org/archive/quri/2020-06-10/quri-20200610-git.tgz MD5 + 409b559ce780952f1349b2abeaf47235 NAME quri FILENAME quri DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME cl-utilities FILENAME cl-utilities) (NAME split-sequence FILENAME split-sequence) (NAME trivial-features FILENAME trivial-features)) DEPENDENCIES (alexandria babel cl-utilities split-sequence trivial-features) VERSION - 20191130-git SIBLINGS (quri-test) PARASITES NIL) */ + 20200610-git SIBLINGS (quri-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/rove.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/rove.nix index 53a1d41a7be..b3fc3b0cd2d 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/rove.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/rove.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''rove''; - version = ''20191007-git''; + version = ''20200325-git''; description = ''Yet another testing framework intended to be a successor of Prove''; deps = [ args."bordeaux-threads" args."dissect" args."trivial-gray-streams" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/rove/2019-10-07/rove-20191007-git.tgz''; - sha256 = ''0ngklk69rn13qgsy9h07sqfqzyl1wqsfrp7izx6whgs62bm0vixa''; + url = ''http://beta.quicklisp.org/archive/rove/2020-03-25/rove-20200325-git.tgz''; + sha256 = ''0zn8d3408rgy2nibia5hdfbf80ix1fgssywx01izx7z99l5x50z5''; }; packageName = "rove"; @@ -19,11 +19,11 @@ rec { } /* (SYSTEM rove DESCRIPTION Yet another testing framework intended to be a successor of Prove SHA256 - 0ngklk69rn13qgsy9h07sqfqzyl1wqsfrp7izx6whgs62bm0vixa URL - http://beta.quicklisp.org/archive/rove/2019-10-07/rove-20191007-git.tgz MD5 - 7ce5d3b0b423f8b68665bbcc51cf18a1 NAME rove FILENAME rove DEPS + 0zn8d3408rgy2nibia5hdfbf80ix1fgssywx01izx7z99l5x50z5 URL + http://beta.quicklisp.org/archive/rove/2020-03-25/rove-20200325-git.tgz MD5 + 7954cb65830d62142babecebf20d0226 NAME rove FILENAME rove DEPS ((NAME bordeaux-threads FILENAME bordeaux-threads) (NAME dissect FILENAME dissect) (NAME trivial-gray-streams FILENAME trivial-gray-streams)) DEPENDENCIES (bordeaux-threads dissect trivial-gray-streams) VERSION - 20191007-git SIBLINGS NIL PARASITES NIL) */ + 20200325-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/s-sql.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/s-sql.nix index 92fa5779452..1f896dc4158 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/s-sql.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/s-sql.nix @@ -1,17 +1,17 @@ args @ { fetchurl, ... }: -{ +rec { baseName = ''s-sql''; - version = ''postmodern-20180430-git''; + version = ''postmodern-20201016-git''; parasites = [ "s-sql/tests" ]; - description = ''''; + description = ''Lispy DSL for SQL''; - deps = [ args."bordeaux-threads" args."cl-postgres" args."cl-postgres_slash_tests" args."closer-mop" args."fiveam" args."md5" args."postmodern" args."split-sequence" args."usocket" ]; + deps = [ args."alexandria" args."bordeaux-threads" args."cl-base64" args."cl-postgres" args."cl-postgres_slash_tests" args."cl-ppcre" args."cl-unicode" args."closer-mop" args."fiveam" args."global-vars" args."ironclad" args."md5" args."postmodern" args."split-sequence" args."uax-15" args."usocket" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/postmodern/2018-04-30/postmodern-20180430-git.tgz''; - sha256 = ''0b6w8f5ihbk036v1fclyskns615xhnib9q3cjn0ql6r6sk3nca7f''; + url = ''http://beta.quicklisp.org/archive/postmodern/2020-10-16/postmodern-20201016-git.tgz''; + sha256 = ''1svaiksbqcaq8sh7q6sj9kzazdfl360zqr2nzhwbgy4xnaj4vf3n''; }; packageName = "s-sql"; @@ -19,19 +19,24 @@ args @ { fetchurl, ... }: asdFilesToKeep = ["s-sql.asd"]; overrides = x: x; } -/* (SYSTEM s-sql DESCRIPTION NIL SHA256 - 0b6w8f5ihbk036v1fclyskns615xhnib9q3cjn0ql6r6sk3nca7f URL - http://beta.quicklisp.org/archive/postmodern/2018-04-30/postmodern-20180430-git.tgz - MD5 9ca2a4ccf4ea7dbcd14d69cb355a8214 NAME s-sql FILENAME s-sql DEPS - ((NAME bordeaux-threads FILENAME bordeaux-threads) +/* (SYSTEM s-sql DESCRIPTION Lispy DSL for SQL SHA256 + 1svaiksbqcaq8sh7q6sj9kzazdfl360zqr2nzhwbgy4xnaj4vf3n URL + http://beta.quicklisp.org/archive/postmodern/2020-10-16/postmodern-20201016-git.tgz + MD5 f61e827d7e7ba023f6fbc7c2667de4c8 NAME s-sql FILENAME s-sql DEPS + ((NAME alexandria FILENAME alexandria) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME cl-base64 FILENAME cl-base64) (NAME cl-postgres FILENAME cl-postgres) (NAME cl-postgres/tests FILENAME cl-postgres_slash_tests) + (NAME cl-ppcre FILENAME cl-ppcre) (NAME cl-unicode FILENAME cl-unicode) (NAME closer-mop FILENAME closer-mop) (NAME fiveam FILENAME fiveam) + (NAME global-vars FILENAME global-vars) (NAME ironclad FILENAME ironclad) (NAME md5 FILENAME md5) (NAME postmodern FILENAME postmodern) (NAME split-sequence FILENAME split-sequence) - (NAME usocket FILENAME usocket)) + (NAME uax-15 FILENAME uax-15) (NAME usocket FILENAME usocket)) DEPENDENCIES - (bordeaux-threads cl-postgres cl-postgres/tests closer-mop fiveam md5 - postmodern split-sequence usocket) - VERSION postmodern-20180430-git SIBLINGS + (alexandria bordeaux-threads cl-base64 cl-postgres cl-postgres/tests + cl-ppcre cl-unicode closer-mop fiveam global-vars ironclad md5 postmodern + split-sequence uax-15 usocket) + VERSION postmodern-20201016-git SIBLINGS (cl-postgres postmodern simple-date) PARASITES (s-sql/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/s-sysdeps.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/s-sysdeps.nix index 1c28ec6e2af..b35f44067d3 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/s-sysdeps.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/s-sysdeps.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''s-sysdeps''; - version = ''20130128-git''; + version = ''20200427-git''; description = ''An abstraction layer over platform dependent functionality''; - deps = [ ]; + deps = [ args."alexandria" args."bordeaux-threads" args."split-sequence" args."usocket" args."usocket-server" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/s-sysdeps/2013-01-28/s-sysdeps-20130128-git.tgz''; - sha256 = ''048q0mzypnm284bvv7036d4z7bv7rdcqks5l372s74kq279l2y00''; + url = ''http://beta.quicklisp.org/archive/s-sysdeps/2020-04-27/s-sysdeps-20200427-git.tgz''; + sha256 = ''04dhi0mibqz4i1jly9i6lrd9lf93i25k2f0hba1sqis3x6sm38zy''; }; packageName = "s-sysdeps"; @@ -19,7 +19,14 @@ rec { } /* (SYSTEM s-sysdeps DESCRIPTION An abstraction layer over platform dependent functionality SHA256 - 048q0mzypnm284bvv7036d4z7bv7rdcqks5l372s74kq279l2y00 URL - http://beta.quicklisp.org/archive/s-sysdeps/2013-01-28/s-sysdeps-20130128-git.tgz - MD5 2fe61fadafd62ef9597e17b4783889ef NAME s-sysdeps FILENAME s-sysdeps DEPS - NIL DEPENDENCIES NIL VERSION 20130128-git SIBLINGS NIL PARASITES NIL) */ + 04dhi0mibqz4i1jly9i6lrd9lf93i25k2f0hba1sqis3x6sm38zy URL + http://beta.quicklisp.org/archive/s-sysdeps/2020-04-27/s-sysdeps-20200427-git.tgz + MD5 2dc062fc985cd3063ef3eddfc544e578 NAME s-sysdeps FILENAME s-sysdeps DEPS + ((NAME alexandria FILENAME alexandria) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME split-sequence FILENAME split-sequence) + (NAME usocket FILENAME usocket) + (NAME usocket-server FILENAME usocket-server)) + DEPENDENCIES + (alexandria bordeaux-threads split-sequence usocket usocket-server) VERSION + 20200427-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/serapeum.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/serapeum.nix index b67bf001b26..85d85463c3d 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/serapeum.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/serapeum.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''serapeum''; - version = ''20191227-git''; + version = ''20201016-git''; description = ''Utilities beyond Alexandria.''; - deps = [ args."alexandria" args."bordeaux-threads" args."closer-mop" args."fare-quasiquote" args."fare-quasiquote-extras" args."fare-quasiquote-optima" args."fare-quasiquote-readtable" args."fare-utils" args."global-vars" args."introspect-environment" args."iterate" args."lisp-namespace" args."named-readtables" args."optima" args."parse-declarations-1_dot_0" args."parse-number" args."split-sequence" args."string-case" args."trivia" args."trivia_dot_balland2006" args."trivia_dot_level0" args."trivia_dot_level1" args."trivia_dot_level2" args."trivia_dot_quasiquote" args."trivia_dot_trivial" args."trivial-cltl2" args."trivial-file-size" args."trivial-garbage" args."trivial-macroexpand-all" args."type-i" args."uiop" ]; + deps = [ args."alexandria" args."bordeaux-threads" args."closer-mop" args."fare-quasiquote" args."fare-quasiquote-extras" args."fare-quasiquote-optima" args."fare-quasiquote-readtable" args."fare-utils" args."global-vars" args."introspect-environment" args."iterate" args."lisp-namespace" args."named-readtables" args."parse-declarations-1_dot_0" args."parse-number" args."split-sequence" args."string-case" args."trivia" args."trivia_dot_balland2006" args."trivia_dot_level0" args."trivia_dot_level1" args."trivia_dot_level2" args."trivia_dot_quasiquote" args."trivia_dot_trivial" args."trivial-cltl2" args."trivial-file-size" args."trivial-garbage" args."trivial-macroexpand-all" args."type-i" args."uiop" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/serapeum/2019-12-27/serapeum-20191227-git.tgz''; - sha256 = ''1d1yyzj1m0fqlr6dvq7njmkl1zdkj00jbd09l281971qwhfhmarr''; + url = ''http://beta.quicklisp.org/archive/serapeum/2020-10-16/serapeum-20201016-git.tgz''; + sha256 = ''0rbxa0r75jxkhisyjwjh7zn7m1450k58sc9g68bgkj0fsjvr44sq''; }; packageName = "serapeum"; @@ -18,9 +18,9 @@ rec { overrides = x: x; } /* (SYSTEM serapeum DESCRIPTION Utilities beyond Alexandria. SHA256 - 1d1yyzj1m0fqlr6dvq7njmkl1zdkj00jbd09l281971qwhfhmarr URL - http://beta.quicklisp.org/archive/serapeum/2019-12-27/serapeum-20191227-git.tgz - MD5 dabf40eb6c6af7509da66450790cbf4e NAME serapeum FILENAME serapeum DEPS + 0rbxa0r75jxkhisyjwjh7zn7m1450k58sc9g68bgkj0fsjvr44sq URL + http://beta.quicklisp.org/archive/serapeum/2020-10-16/serapeum-20201016-git.tgz + MD5 1281652013f4ef5a67ffd5c6e8d44fe9 NAME serapeum FILENAME serapeum DEPS ((NAME alexandria FILENAME alexandria) (NAME bordeaux-threads FILENAME bordeaux-threads) (NAME closer-mop FILENAME closer-mop) @@ -34,7 +34,6 @@ rec { (NAME iterate FILENAME iterate) (NAME lisp-namespace FILENAME lisp-namespace) (NAME named-readtables FILENAME named-readtables) - (NAME optima FILENAME optima) (NAME parse-declarations-1.0 FILENAME parse-declarations-1_dot_0) (NAME parse-number FILENAME parse-number) (NAME split-sequence FILENAME split-sequence) @@ -54,8 +53,8 @@ rec { (alexandria bordeaux-threads closer-mop fare-quasiquote fare-quasiquote-extras fare-quasiquote-optima fare-quasiquote-readtable fare-utils global-vars introspect-environment iterate lisp-namespace - named-readtables optima parse-declarations-1.0 parse-number split-sequence + named-readtables parse-declarations-1.0 parse-number split-sequence string-case trivia trivia.balland2006 trivia.level0 trivia.level1 trivia.level2 trivia.quasiquote trivia.trivial trivial-cltl2 trivial-file-size trivial-garbage trivial-macroexpand-all type-i uiop) - VERSION 20191227-git SIBLINGS NIL PARASITES NIL) */ + VERSION 20201016-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/simple-date-time.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/simple-date-time.nix new file mode 100644 index 00000000000..1f2759cf388 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/simple-date-time.nix @@ -0,0 +1,25 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''simple-date-time''; + version = ''20160421-git''; + + description = ''date and time library for common lisp''; + + deps = [ args."cl-ppcre" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/simple-date-time/2016-04-21/simple-date-time-20160421-git.tgz''; + sha256 = ''1db9n7pspxkqkzz12829a1lp7v4ghrnlb7g3wh04yz6m224d3i4h''; + }; + + packageName = "simple-date-time"; + + asdFilesToKeep = ["simple-date-time.asd"]; + overrides = x: x; +} +/* (SYSTEM simple-date-time DESCRIPTION date and time library for common lisp + SHA256 1db9n7pspxkqkzz12829a1lp7v4ghrnlb7g3wh04yz6m224d3i4h URL + http://beta.quicklisp.org/archive/simple-date-time/2016-04-21/simple-date-time-20160421-git.tgz + MD5 a5b1e4af539646723dafacbc8cf732a0 NAME simple-date-time FILENAME + simple-date-time DEPS ((NAME cl-ppcre FILENAME cl-ppcre)) DEPENDENCIES + (cl-ppcre) VERSION 20160421-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/simple-date.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/simple-date.nix index ccf102aaad5..55671ce1336 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/simple-date.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/simple-date.nix @@ -1,17 +1,17 @@ args @ { fetchurl, ... }: rec { baseName = ''simple-date''; - version = ''postmodern-20191227-git''; + version = ''postmodern-20201016-git''; - parasites = [ "simple-date/postgres-glue" "simple-date/tests" ]; + parasites = [ "simple-date/tests" ]; - description = ''System lacks description''; + description = ''Simple date library that can be used with postmodern''; - deps = [ args."cl-postgres" args."fiveam" args."md5" args."usocket" ]; + deps = [ args."fiveam" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/postmodern/2019-12-27/postmodern-20191227-git.tgz''; - sha256 = ''1p44aphx7y0lh018pk2r9w006vinc5yrfrp1m9l9648p2jxiw1c4''; + url = ''http://beta.quicklisp.org/archive/postmodern/2020-10-16/postmodern-20201016-git.tgz''; + sha256 = ''1svaiksbqcaq8sh7q6sj9kzazdfl360zqr2nzhwbgy4xnaj4vf3n''; }; packageName = "simple-date"; @@ -19,13 +19,11 @@ rec { asdFilesToKeep = ["simple-date.asd"]; overrides = x: x; } -/* (SYSTEM simple-date DESCRIPTION System lacks description SHA256 - 1p44aphx7y0lh018pk2r9w006vinc5yrfrp1m9l9648p2jxiw1c4 URL - http://beta.quicklisp.org/archive/postmodern/2019-12-27/postmodern-20191227-git.tgz - MD5 67b909de432e6414e7832eed18f9ad18 NAME simple-date FILENAME simple-date - DEPS - ((NAME cl-postgres FILENAME cl-postgres) (NAME fiveam FILENAME fiveam) - (NAME md5 FILENAME md5) (NAME usocket FILENAME usocket)) - DEPENDENCIES (cl-postgres fiveam md5 usocket) VERSION - postmodern-20191227-git SIBLINGS (cl-postgres postmodern s-sql) PARASITES - (simple-date/postgres-glue simple-date/tests)) */ +/* (SYSTEM simple-date DESCRIPTION + Simple date library that can be used with postmodern SHA256 + 1svaiksbqcaq8sh7q6sj9kzazdfl360zqr2nzhwbgy4xnaj4vf3n URL + http://beta.quicklisp.org/archive/postmodern/2020-10-16/postmodern-20201016-git.tgz + MD5 f61e827d7e7ba023f6fbc7c2667de4c8 NAME simple-date FILENAME simple-date + DEPS ((NAME fiveam FILENAME fiveam)) DEPENDENCIES (fiveam) VERSION + postmodern-20201016-git SIBLINGS (cl-postgres postmodern s-sql) PARASITES + (simple-date/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/simple-tasks.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/simple-tasks.nix new file mode 100644 index 00000000000..55d35ba8c0f --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/simple-tasks.nix @@ -0,0 +1,30 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''simple-tasks''; + version = ''20190710-git''; + + description = ''A very simple task scheduling framework.''; + + deps = [ args."alexandria" args."array-utils" args."bordeaux-threads" args."dissect" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/simple-tasks/2019-07-10/simple-tasks-20190710-git.tgz''; + sha256 = ''12y5phnbj9s2fsrz1ab6xj857zf1fv8kjk7jj2mdjs6k2d8gk8v3''; + }; + + packageName = "simple-tasks"; + + asdFilesToKeep = ["simple-tasks.asd"]; + overrides = x: x; +} +/* (SYSTEM simple-tasks DESCRIPTION A very simple task scheduling framework. + SHA256 12y5phnbj9s2fsrz1ab6xj857zf1fv8kjk7jj2mdjs6k2d8gk8v3 URL + http://beta.quicklisp.org/archive/simple-tasks/2019-07-10/simple-tasks-20190710-git.tgz + MD5 8e88a9a762bc8691f92217d256baa55e NAME simple-tasks FILENAME + simple-tasks DEPS + ((NAME alexandria FILENAME alexandria) + (NAME array-utils FILENAME array-utils) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME dissect FILENAME dissect)) + DEPENDENCIES (alexandria array-utils bordeaux-threads dissect) VERSION + 20190710-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/static-vectors.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/static-vectors.nix index 7dc242858c6..7a84f077711 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/static-vectors.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/static-vectors.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''static-vectors''; - version = ''v1.8.4''; + version = ''v1.8.6''; parasites = [ "static-vectors/test" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."alexandria" args."babel" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."fiveam" args."trivial-features" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/static-vectors/2019-11-30/static-vectors-v1.8.4.tgz''; - sha256 = ''07z3nrsf5ds5iqilpi8awfk5flgy0k58znnn94xlx82hznw4hwxp''; + url = ''http://beta.quicklisp.org/archive/static-vectors/2020-06-10/static-vectors-v1.8.6.tgz''; + sha256 = ''0s549cxd8a8ix6jl4dfxj2nh01nl9f4hgnlmb88w7iixanxn58mc''; }; packageName = "static-vectors"; @@ -21,9 +21,9 @@ rec { } /* (SYSTEM static-vectors DESCRIPTION Create vectors allocated in static memory. SHA256 - 07z3nrsf5ds5iqilpi8awfk5flgy0k58znnn94xlx82hznw4hwxp URL - http://beta.quicklisp.org/archive/static-vectors/2019-11-30/static-vectors-v1.8.4.tgz - MD5 401085c3ec0edc3ab47409e5a4b534c7 NAME static-vectors FILENAME + 0s549cxd8a8ix6jl4dfxj2nh01nl9f4hgnlmb88w7iixanxn58mc URL + http://beta.quicklisp.org/archive/static-vectors/2020-06-10/static-vectors-v1.8.6.tgz + MD5 c817377fc6807d9c7bee6bd8996068b5 NAME static-vectors FILENAME static-vectors DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME cffi FILENAME cffi) (NAME cffi-grovel FILENAME cffi-grovel) @@ -32,4 +32,4 @@ rec { (NAME trivial-features FILENAME trivial-features)) DEPENDENCIES (alexandria babel cffi cffi-grovel cffi-toolchain fiveam trivial-features) - VERSION v1.8.4 SIBLINGS NIL PARASITES (static-vectors/test)) */ + VERSION v1.8.6 SIBLINGS NIL PARASITES (static-vectors/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/str.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/str.nix index bb542443834..1109c9da04c 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/str.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/str.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''str''; - version = ''cl-20191227-git''; + version = ''cl-20200925-git''; description = ''Modern, consistent and terse Common Lisp string manipulation library.''; deps = [ args."cl-change-case" args."cl-ppcre" args."cl-ppcre-unicode" args."cl-unicode" args."flexi-streams" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/cl-str/2019-12-27/cl-str-20191227-git.tgz''; - sha256 = ''0dakksvrd6s96szwhwd89i0hy9mjff2vck30bdnvb6prkwg2c2g6''; + url = ''http://beta.quicklisp.org/archive/cl-str/2020-09-25/cl-str-20200925-git.tgz''; + sha256 = ''06k81x80vjw7qd8gca6lnm5k5ws40c6kl99s7m4z72v7jxwa9ykn''; }; packageName = "str"; @@ -19,9 +19,9 @@ rec { } /* (SYSTEM str DESCRIPTION Modern, consistent and terse Common Lisp string manipulation library. - SHA256 0dakksvrd6s96szwhwd89i0hy9mjff2vck30bdnvb6prkwg2c2g6 URL - http://beta.quicklisp.org/archive/cl-str/2019-12-27/cl-str-20191227-git.tgz - MD5 b2800b32209061b274432c7e699d92b4 NAME str FILENAME str DEPS + SHA256 06k81x80vjw7qd8gca6lnm5k5ws40c6kl99s7m4z72v7jxwa9ykn URL + http://beta.quicklisp.org/archive/cl-str/2020-09-25/cl-str-20200925-git.tgz + MD5 885f94c2be768818ca2fd5e5d562b789 NAME str FILENAME str DEPS ((NAME cl-change-case FILENAME cl-change-case) (NAME cl-ppcre FILENAME cl-ppcre) (NAME cl-ppcre-unicode FILENAME cl-ppcre-unicode) @@ -29,4 +29,4 @@ rec { (NAME flexi-streams FILENAME flexi-streams)) DEPENDENCIES (cl-change-case cl-ppcre cl-ppcre-unicode cl-unicode flexi-streams) VERSION - cl-20191227-git SIBLINGS (str.test) PARASITES NIL) */ + cl-20200925-git SIBLINGS (str.test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/stumpwm.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/stumpwm.nix index a90e497d449..2ad15d1bd13 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/stumpwm.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/stumpwm.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''stumpwm''; - version = ''20191227-git''; + version = ''20201016-git''; description = ''A tiling, keyboard driven window manager''; deps = [ args."alexandria" args."cl-ppcre" args."clx" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/stumpwm/2019-12-27/stumpwm-20191227-git.tgz''; - sha256 = ''1dlw4y1mpsmgx7r0mdiccvnv56xpbq0rigyb2n04kq4hkp7zj6rm''; + url = ''http://beta.quicklisp.org/archive/stumpwm/2020-10-16/stumpwm-20201016-git.tgz''; + sha256 = ''06lc1d9y83x0ckqd9pls7a1dyriz650mpv1rigncr02qsj3aqpp2''; }; packageName = "stumpwm"; @@ -18,10 +18,10 @@ rec { overrides = x: x; } /* (SYSTEM stumpwm DESCRIPTION A tiling, keyboard driven window manager SHA256 - 1dlw4y1mpsmgx7r0mdiccvnv56xpbq0rigyb2n04kq4hkp7zj6rm URL - http://beta.quicklisp.org/archive/stumpwm/2019-12-27/stumpwm-20191227-git.tgz - MD5 247f56ddbdc8bdf4cf087a467ddce6f6 NAME stumpwm FILENAME stumpwm DEPS + 06lc1d9y83x0ckqd9pls7a1dyriz650mpv1rigncr02qsj3aqpp2 URL + http://beta.quicklisp.org/archive/stumpwm/2020-10-16/stumpwm-20201016-git.tgz + MD5 fe99208b03be907ad75b0ed388e171c3 NAME stumpwm FILENAME stumpwm DEPS ((NAME alexandria FILENAME alexandria) (NAME cl-ppcre FILENAME cl-ppcre) (NAME clx FILENAME clx)) - DEPENDENCIES (alexandria cl-ppcre clx) VERSION 20191227-git SIBLINGS + DEPENDENCIES (alexandria cl-ppcre clx) VERSION 20201016-git SIBLINGS (stumpwm-tests) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/swank.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/swank.nix index 50b815425dc..69deb9044c3 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/swank.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/swank.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''swank''; - version = ''slime-v2.24''; + version = ''slime-v2.26''; description = ''System lacks description''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/slime/2019-07-10/slime-v2.24.tgz''; - sha256 = ''0gsq3i5818iwfbh710lf96kb66q3ap3qvvkcj06zyfh30n50x1g6''; + url = ''http://beta.quicklisp.org/archive/slime/2020-09-25/slime-v2.26.tgz''; + sha256 = ''0zba4vm73g9zamhqkqcb0prm51kf4clixm2rjz89mq180qa7rrqc''; }; packageName = "swank"; @@ -18,7 +18,7 @@ rec { overrides = x: x; } /* (SYSTEM swank DESCRIPTION System lacks description SHA256 - 0gsq3i5818iwfbh710lf96kb66q3ap3qvvkcj06zyfh30n50x1g6 URL - http://beta.quicklisp.org/archive/slime/2019-07-10/slime-v2.24.tgz MD5 - 05f421f7a9dffa4ba206c548524ef1c0 NAME swank FILENAME swank DEPS NIL - DEPENDENCIES NIL VERSION slime-v2.24 SIBLINGS NIL PARASITES NIL) */ + 0zba4vm73g9zamhqkqcb0prm51kf4clixm2rjz89mq180qa7rrqc URL + http://beta.quicklisp.org/archive/slime/2020-09-25/slime-v2.26.tgz MD5 + 8f18fbb04ca96733f683c863b44af484 NAME swank FILENAME swank DEPS NIL + DEPENDENCIES NIL VERSION slime-v2.26 SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia.nix index 3051d3cd5a9..141937219cd 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''trivia''; - version = ''20191227-git''; + version = ''20200925-git''; description = ''NON-optimized pattern matcher compatible with OPTIMA, with extensible optimizer interface and clean codebase''; deps = [ args."alexandria" args."closer-mop" args."introspect-environment" args."iterate" args."lisp-namespace" args."trivia_dot_balland2006" args."trivia_dot_level0" args."trivia_dot_level1" args."trivia_dot_level2" args."trivia_dot_trivial" args."trivial-cltl2" args."type-i" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivia/2019-12-27/trivia-20191227-git.tgz''; - sha256 = ''1hn6klc2jlh2qhlc4zr9fi02kqlyfyh5bkcgirql1m06g4j8qi4q''; + url = ''http://beta.quicklisp.org/archive/trivia/2020-09-25/trivia-20200925-git.tgz''; + sha256 = ''192306pdx50nikph36swipdy2xz1jqrr8p9c3bi91m8qws75wi4z''; }; packageName = "trivia"; @@ -19,9 +19,9 @@ rec { } /* (SYSTEM trivia DESCRIPTION NON-optimized pattern matcher compatible with OPTIMA, with extensible optimizer interface and clean codebase - SHA256 1hn6klc2jlh2qhlc4zr9fi02kqlyfyh5bkcgirql1m06g4j8qi4q URL - http://beta.quicklisp.org/archive/trivia/2019-12-27/trivia-20191227-git.tgz - MD5 645f0e0fcf57ab37ebd4f0a1b7b05854 NAME trivia FILENAME trivia DEPS + SHA256 192306pdx50nikph36swipdy2xz1jqrr8p9c3bi91m8qws75wi4z URL + http://beta.quicklisp.org/archive/trivia/2020-09-25/trivia-20200925-git.tgz + MD5 c6546ecf272e52e051a9d3946242511b NAME trivia FILENAME trivia DEPS ((NAME alexandria FILENAME alexandria) (NAME closer-mop FILENAME closer-mop) (NAME introspect-environment FILENAME introspect-environment) @@ -37,7 +37,7 @@ rec { (alexandria closer-mop introspect-environment iterate lisp-namespace trivia.balland2006 trivia.level0 trivia.level1 trivia.level2 trivia.trivial trivial-cltl2 type-i) - VERSION 20191227-git SIBLINGS + VERSION 20200925-git SIBLINGS (trivia.balland2006 trivia.benchmark trivia.cffi trivia.level0 trivia.level1 trivia.level2 trivia.ppcre trivia.quasiquote trivia.test trivia.trivial) diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_balland2006.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_balland2006.nix index 1559589c9c3..6b5e161a214 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_balland2006.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_balland2006.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''trivia_dot_balland2006''; - version = ''trivia-20191227-git''; + version = ''trivia-20200925-git''; description = ''Optimizer for Trivia based on (Balland 2006)''; deps = [ args."alexandria" args."closer-mop" args."introspect-environment" args."iterate" args."lisp-namespace" args."trivia_dot_level0" args."trivia_dot_level1" args."trivia_dot_level2" args."trivia_dot_trivial" args."trivial-cltl2" args."type-i" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivia/2019-12-27/trivia-20191227-git.tgz''; - sha256 = ''1hn6klc2jlh2qhlc4zr9fi02kqlyfyh5bkcgirql1m06g4j8qi4q''; + url = ''http://beta.quicklisp.org/archive/trivia/2020-09-25/trivia-20200925-git.tgz''; + sha256 = ''192306pdx50nikph36swipdy2xz1jqrr8p9c3bi91m8qws75wi4z''; }; packageName = "trivia.balland2006"; @@ -19,9 +19,9 @@ rec { } /* (SYSTEM trivia.balland2006 DESCRIPTION Optimizer for Trivia based on (Balland 2006) SHA256 - 1hn6klc2jlh2qhlc4zr9fi02kqlyfyh5bkcgirql1m06g4j8qi4q URL - http://beta.quicklisp.org/archive/trivia/2019-12-27/trivia-20191227-git.tgz - MD5 645f0e0fcf57ab37ebd4f0a1b7b05854 NAME trivia.balland2006 FILENAME + 192306pdx50nikph36swipdy2xz1jqrr8p9c3bi91m8qws75wi4z URL + http://beta.quicklisp.org/archive/trivia/2020-09-25/trivia-20200925-git.tgz + MD5 c6546ecf272e52e051a9d3946242511b NAME trivia.balland2006 FILENAME trivia_dot_balland2006 DEPS ((NAME alexandria FILENAME alexandria) (NAME closer-mop FILENAME closer-mop) @@ -37,7 +37,7 @@ rec { (alexandria closer-mop introspect-environment iterate lisp-namespace trivia.level0 trivia.level1 trivia.level2 trivia.trivial trivial-cltl2 type-i) - VERSION trivia-20191227-git SIBLINGS + VERSION trivia-20200925-git SIBLINGS (trivia trivia.benchmark trivia.cffi trivia.level0 trivia.level1 trivia.level2 trivia.ppcre trivia.quasiquote trivia.test trivia.trivial) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_level0.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_level0.nix index 7d38ca2f2da..1c883c07ab0 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_level0.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_level0.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''trivia_dot_level0''; - version = ''trivia-20191227-git''; + version = ''trivia-20200925-git''; description = ''Bootstrapping Pattern Matching Library for implementing Trivia''; deps = [ args."alexandria" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivia/2019-12-27/trivia-20191227-git.tgz''; - sha256 = ''1hn6klc2jlh2qhlc4zr9fi02kqlyfyh5bkcgirql1m06g4j8qi4q''; + url = ''http://beta.quicklisp.org/archive/trivia/2020-09-25/trivia-20200925-git.tgz''; + sha256 = ''192306pdx50nikph36swipdy2xz1jqrr8p9c3bi91m8qws75wi4z''; }; packageName = "trivia.level0"; @@ -19,11 +19,11 @@ rec { } /* (SYSTEM trivia.level0 DESCRIPTION Bootstrapping Pattern Matching Library for implementing Trivia SHA256 - 1hn6klc2jlh2qhlc4zr9fi02kqlyfyh5bkcgirql1m06g4j8qi4q URL - http://beta.quicklisp.org/archive/trivia/2019-12-27/trivia-20191227-git.tgz - MD5 645f0e0fcf57ab37ebd4f0a1b7b05854 NAME trivia.level0 FILENAME + 192306pdx50nikph36swipdy2xz1jqrr8p9c3bi91m8qws75wi4z URL + http://beta.quicklisp.org/archive/trivia/2020-09-25/trivia-20200925-git.tgz + MD5 c6546ecf272e52e051a9d3946242511b NAME trivia.level0 FILENAME trivia_dot_level0 DEPS ((NAME alexandria FILENAME alexandria)) DEPENDENCIES - (alexandria) VERSION trivia-20191227-git SIBLINGS + (alexandria) VERSION trivia-20200925-git SIBLINGS (trivia trivia.balland2006 trivia.benchmark trivia.cffi trivia.level1 trivia.level2 trivia.ppcre trivia.quasiquote trivia.test trivia.trivial) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_level1.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_level1.nix index 66c38c0d10e..1e9394d6447 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_level1.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_level1.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''trivia_dot_level1''; - version = ''trivia-20191227-git''; + version = ''trivia-20200925-git''; description = ''Core patterns of Trivia''; deps = [ args."alexandria" args."trivia_dot_level0" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivia/2019-12-27/trivia-20191227-git.tgz''; - sha256 = ''1hn6klc2jlh2qhlc4zr9fi02kqlyfyh5bkcgirql1m06g4j8qi4q''; + url = ''http://beta.quicklisp.org/archive/trivia/2020-09-25/trivia-20200925-git.tgz''; + sha256 = ''192306pdx50nikph36swipdy2xz1jqrr8p9c3bi91m8qws75wi4z''; }; packageName = "trivia.level1"; @@ -18,13 +18,13 @@ rec { overrides = x: x; } /* (SYSTEM trivia.level1 DESCRIPTION Core patterns of Trivia SHA256 - 1hn6klc2jlh2qhlc4zr9fi02kqlyfyh5bkcgirql1m06g4j8qi4q URL - http://beta.quicklisp.org/archive/trivia/2019-12-27/trivia-20191227-git.tgz - MD5 645f0e0fcf57ab37ebd4f0a1b7b05854 NAME trivia.level1 FILENAME + 192306pdx50nikph36swipdy2xz1jqrr8p9c3bi91m8qws75wi4z URL + http://beta.quicklisp.org/archive/trivia/2020-09-25/trivia-20200925-git.tgz + MD5 c6546ecf272e52e051a9d3946242511b NAME trivia.level1 FILENAME trivia_dot_level1 DEPS ((NAME alexandria FILENAME alexandria) (NAME trivia.level0 FILENAME trivia_dot_level0)) - DEPENDENCIES (alexandria trivia.level0) VERSION trivia-20191227-git + DEPENDENCIES (alexandria trivia.level0) VERSION trivia-20200925-git SIBLINGS (trivia trivia.balland2006 trivia.benchmark trivia.cffi trivia.level0 trivia.level2 trivia.ppcre trivia.quasiquote trivia.test trivia.trivial) diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_level2.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_level2.nix index 1df169d4abd..75ee2bd8ee7 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_level2.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_level2.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''trivia_dot_level2''; - version = ''trivia-20191227-git''; + version = ''trivia-20200925-git''; description = ''NON-optimized pattern matcher compatible with OPTIMA, with extensible optimizer interface and clean codebase''; deps = [ args."alexandria" args."closer-mop" args."lisp-namespace" args."trivia_dot_level0" args."trivia_dot_level1" args."trivial-cltl2" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivia/2019-12-27/trivia-20191227-git.tgz''; - sha256 = ''1hn6klc2jlh2qhlc4zr9fi02kqlyfyh5bkcgirql1m06g4j8qi4q''; + url = ''http://beta.quicklisp.org/archive/trivia/2020-09-25/trivia-20200925-git.tgz''; + sha256 = ''192306pdx50nikph36swipdy2xz1jqrr8p9c3bi91m8qws75wi4z''; }; packageName = "trivia.level2"; @@ -19,9 +19,9 @@ rec { } /* (SYSTEM trivia.level2 DESCRIPTION NON-optimized pattern matcher compatible with OPTIMA, with extensible optimizer interface and clean codebase - SHA256 1hn6klc2jlh2qhlc4zr9fi02kqlyfyh5bkcgirql1m06g4j8qi4q URL - http://beta.quicklisp.org/archive/trivia/2019-12-27/trivia-20191227-git.tgz - MD5 645f0e0fcf57ab37ebd4f0a1b7b05854 NAME trivia.level2 FILENAME + SHA256 192306pdx50nikph36swipdy2xz1jqrr8p9c3bi91m8qws75wi4z URL + http://beta.quicklisp.org/archive/trivia/2020-09-25/trivia-20200925-git.tgz + MD5 c6546ecf272e52e051a9d3946242511b NAME trivia.level2 FILENAME trivia_dot_level2 DEPS ((NAME alexandria FILENAME alexandria) (NAME closer-mop FILENAME closer-mop) @@ -32,7 +32,7 @@ rec { DEPENDENCIES (alexandria closer-mop lisp-namespace trivia.level0 trivia.level1 trivial-cltl2) - VERSION trivia-20191227-git SIBLINGS + VERSION trivia-20200925-git SIBLINGS (trivia trivia.balland2006 trivia.benchmark trivia.cffi trivia.level0 trivia.level1 trivia.ppcre trivia.quasiquote trivia.test trivia.trivial) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_quasiquote.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_quasiquote.nix index 9150c2b3d0f..07ad7a56c2e 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_quasiquote.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_quasiquote.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''trivia_dot_quasiquote''; - version = ''trivia-20191227-git''; + version = ''trivia-20200925-git''; description = ''fare-quasiquote extension for trivia''; deps = [ args."alexandria" args."closer-mop" args."fare-quasiquote" args."fare-quasiquote-readtable" args."fare-utils" args."lisp-namespace" args."named-readtables" args."trivia_dot_level0" args."trivia_dot_level1" args."trivia_dot_level2" args."trivia_dot_trivial" args."trivial-cltl2" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivia/2019-12-27/trivia-20191227-git.tgz''; - sha256 = ''1hn6klc2jlh2qhlc4zr9fi02kqlyfyh5bkcgirql1m06g4j8qi4q''; + url = ''http://beta.quicklisp.org/archive/trivia/2020-09-25/trivia-20200925-git.tgz''; + sha256 = ''192306pdx50nikph36swipdy2xz1jqrr8p9c3bi91m8qws75wi4z''; }; packageName = "trivia.quasiquote"; @@ -18,9 +18,9 @@ rec { overrides = x: x; } /* (SYSTEM trivia.quasiquote DESCRIPTION fare-quasiquote extension for trivia - SHA256 1hn6klc2jlh2qhlc4zr9fi02kqlyfyh5bkcgirql1m06g4j8qi4q URL - http://beta.quicklisp.org/archive/trivia/2019-12-27/trivia-20191227-git.tgz - MD5 645f0e0fcf57ab37ebd4f0a1b7b05854 NAME trivia.quasiquote FILENAME + SHA256 192306pdx50nikph36swipdy2xz1jqrr8p9c3bi91m8qws75wi4z URL + http://beta.quicklisp.org/archive/trivia/2020-09-25/trivia-20200925-git.tgz + MD5 c6546ecf272e52e051a9d3946242511b NAME trivia.quasiquote FILENAME trivia_dot_quasiquote DEPS ((NAME alexandria FILENAME alexandria) (NAME closer-mop FILENAME closer-mop) @@ -38,7 +38,7 @@ rec { (alexandria closer-mop fare-quasiquote fare-quasiquote-readtable fare-utils lisp-namespace named-readtables trivia.level0 trivia.level1 trivia.level2 trivia.trivial trivial-cltl2) - VERSION trivia-20191227-git SIBLINGS + VERSION trivia-20200925-git SIBLINGS (trivia trivia.balland2006 trivia.benchmark trivia.cffi trivia.level0 trivia.level1 trivia.level2 trivia.ppcre trivia.test trivia.trivial) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_trivial.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_trivial.nix index 9d8a1a3acb1..e2b8add6dfc 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_trivial.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivia_dot_trivial.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''trivia_dot_trivial''; - version = ''trivia-20191227-git''; + version = ''trivia-20200925-git''; description = ''Base level system of Trivia with a trivial optimizer. Systems that intend to enhance Trivia should depend on this package, not the TRIVIA system, @@ -10,8 +10,8 @@ rec { deps = [ args."alexandria" args."closer-mop" args."lisp-namespace" args."trivia_dot_level0" args."trivia_dot_level1" args."trivia_dot_level2" args."trivial-cltl2" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivia/2019-12-27/trivia-20191227-git.tgz''; - sha256 = ''1hn6klc2jlh2qhlc4zr9fi02kqlyfyh5bkcgirql1m06g4j8qi4q''; + url = ''http://beta.quicklisp.org/archive/trivia/2020-09-25/trivia-20200925-git.tgz''; + sha256 = ''192306pdx50nikph36swipdy2xz1jqrr8p9c3bi91m8qws75wi4z''; }; packageName = "trivia.trivial"; @@ -23,9 +23,9 @@ rec { Base level system of Trivia with a trivial optimizer. Systems that intend to enhance Trivia should depend on this package, not the TRIVIA system, in order to avoid the circular dependency. - SHA256 1hn6klc2jlh2qhlc4zr9fi02kqlyfyh5bkcgirql1m06g4j8qi4q URL - http://beta.quicklisp.org/archive/trivia/2019-12-27/trivia-20191227-git.tgz - MD5 645f0e0fcf57ab37ebd4f0a1b7b05854 NAME trivia.trivial FILENAME + SHA256 192306pdx50nikph36swipdy2xz1jqrr8p9c3bi91m8qws75wi4z URL + http://beta.quicklisp.org/archive/trivia/2020-09-25/trivia-20200925-git.tgz + MD5 c6546ecf272e52e051a9d3946242511b NAME trivia.trivial FILENAME trivia_dot_trivial DEPS ((NAME alexandria FILENAME alexandria) (NAME closer-mop FILENAME closer-mop) @@ -37,7 +37,7 @@ rec { DEPENDENCIES (alexandria closer-mop lisp-namespace trivia.level0 trivia.level1 trivia.level2 trivial-cltl2) - VERSION trivia-20191227-git SIBLINGS + VERSION trivia-20200925-git SIBLINGS (trivia trivia.balland2006 trivia.benchmark trivia.cffi trivia.level0 trivia.level1 trivia.level2 trivia.ppcre trivia.quasiquote trivia.test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-backtrace.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-backtrace.nix index 683f87357f5..2d2bc4110dc 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-backtrace.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-backtrace.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''trivial-backtrace''; - version = ''20190710-git''; + version = ''20200610-git''; description = ''trivial-backtrace''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivial-backtrace/2019-07-10/trivial-backtrace-20190710-git.tgz''; - sha256 = ''01pzn5ki3w5sgp270rqg6y982zw4p72x5zqcdjgn8hp7lk2a9g9x''; + url = ''http://beta.quicklisp.org/archive/trivial-backtrace/2020-06-10/trivial-backtrace-20200610-git.tgz''; + sha256 = ''0slz2chal6vpiqx9zmjh4cnihhw794rq3267s7kz7livpiv52rks''; }; packageName = "trivial-backtrace"; @@ -18,8 +18,8 @@ rec { overrides = x: x; } /* (SYSTEM trivial-backtrace DESCRIPTION trivial-backtrace SHA256 - 01pzn5ki3w5sgp270rqg6y982zw4p72x5zqcdjgn8hp7lk2a9g9x URL - http://beta.quicklisp.org/archive/trivial-backtrace/2019-07-10/trivial-backtrace-20190710-git.tgz - MD5 e9035ed00321b24278cbf5449a1aebed NAME trivial-backtrace FILENAME - trivial-backtrace DEPS NIL DEPENDENCIES NIL VERSION 20190710-git SIBLINGS + 0slz2chal6vpiqx9zmjh4cnihhw794rq3267s7kz7livpiv52rks URL + http://beta.quicklisp.org/archive/trivial-backtrace/2020-06-10/trivial-backtrace-20200610-git.tgz + MD5 1d9a7cc7c5840e4eba84c89648908525 NAME trivial-backtrace FILENAME + trivial-backtrace DEPS NIL DEPENDENCIES NIL VERSION 20200610-git SIBLINGS (trivial-backtrace-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-clipboard.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-clipboard.nix index 16d265d465a..3e21ceab87d 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-clipboard.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-clipboard.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''trivial-clipboard''; - version = ''20190202-git''; + version = ''20200925-git''; description = ''trivial-clipboard let access system clipboard.''; deps = [ args."uiop" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivial-clipboard/2019-02-02/trivial-clipboard-20190202-git.tgz''; - sha256 = ''06ic4lqampxnycz5s0frn7f8fqjpp8mlrnsnlh77gldxlh02pwq1''; + url = ''http://beta.quicklisp.org/archive/trivial-clipboard/2020-09-25/trivial-clipboard-20200925-git.tgz''; + sha256 = ''1aksag9nfklkg0bshd7dxfip4dj9gl3x0cbisgd2c143k2csb1yc''; }; packageName = "trivial-clipboard"; @@ -19,8 +19,8 @@ rec { } /* (SYSTEM trivial-clipboard DESCRIPTION trivial-clipboard let access system clipboard. SHA256 - 06ic4lqampxnycz5s0frn7f8fqjpp8mlrnsnlh77gldxlh02pwq1 URL - http://beta.quicklisp.org/archive/trivial-clipboard/2019-02-02/trivial-clipboard-20190202-git.tgz - MD5 d9b9ee3754e10888ce243172681a0db2 NAME trivial-clipboard FILENAME + 1aksag9nfklkg0bshd7dxfip4dj9gl3x0cbisgd2c143k2csb1yc URL + http://beta.quicklisp.org/archive/trivial-clipboard/2020-09-25/trivial-clipboard-20200925-git.tgz + MD5 4098d356666a3a3a1ff6a45b10e28354 NAME trivial-clipboard FILENAME trivial-clipboard DEPS ((NAME uiop FILENAME uiop)) DEPENDENCIES (uiop) - VERSION 20190202-git SIBLINGS (trivial-clipboard-test) PARASITES NIL) */ + VERSION 20200925-git SIBLINGS (trivial-clipboard-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-cltl2.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-cltl2.nix index a5242030473..278ad5b0ac4 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-cltl2.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-cltl2.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''trivial-cltl2''; - version = ''20190710-git''; + version = ''20200325-git''; description = ''Compatibility package exporting CLtL2 functionality''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivial-cltl2/2019-07-10/trivial-cltl2-20190710-git.tgz''; - sha256 = ''1qaxwgws8ji6dyh30ff608zpdrplifgkhfdhfnn0367d3rvy11jb''; + url = ''http://beta.quicklisp.org/archive/trivial-cltl2/2020-03-25/trivial-cltl2-20200325-git.tgz''; + sha256 = ''0hahi36v47alsvamg62d0cgay8l0razcgxl089ifj6sqy7s8iwys''; }; packageName = "trivial-cltl2"; @@ -19,8 +19,8 @@ rec { } /* (SYSTEM trivial-cltl2 DESCRIPTION Compatibility package exporting CLtL2 functionality SHA256 - 1qaxwgws8ji6dyh30ff608zpdrplifgkhfdhfnn0367d3rvy11jb URL - http://beta.quicklisp.org/archive/trivial-cltl2/2019-07-10/trivial-cltl2-20190710-git.tgz - MD5 8114f96b9770a9f0e0a94933918dc171 NAME trivial-cltl2 FILENAME - trivial-cltl2 DEPS NIL DEPENDENCIES NIL VERSION 20190710-git SIBLINGS NIL + 0hahi36v47alsvamg62d0cgay8l0razcgxl089ifj6sqy7s8iwys URL + http://beta.quicklisp.org/archive/trivial-cltl2/2020-03-25/trivial-cltl2-20200325-git.tgz + MD5 aa18140b9840365ceb9a6cddbdbdd67b NAME trivial-cltl2 FILENAME + trivial-cltl2 DEPS NIL DEPENDENCIES NIL VERSION 20200325-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-features.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-features.nix index 82d0e4513ab..53669a4675b 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-features.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-features.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''trivial-features''; - version = ''20190710-git''; + version = ''20200715-git''; description = ''Ensures consistent *FEATURES* across multiple CLs.''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivial-features/2019-07-10/trivial-features-20190710-git.tgz''; - sha256 = ''04i2vhhij8pwy46zih1dkm8ldy8qqgrncxxqd4y1sgiq3airg3dy''; + url = ''http://beta.quicklisp.org/archive/trivial-features/2020-07-15/trivial-features-20200715-git.tgz''; + sha256 = ''0h0xxkp7vciq5yj6a1b5k76h7mzqgb5f9v25nssijgp738nmkni2''; }; packageName = "trivial-features"; @@ -19,8 +19,8 @@ rec { } /* (SYSTEM trivial-features DESCRIPTION Ensures consistent *FEATURES* across multiple CLs. SHA256 - 04i2vhhij8pwy46zih1dkm8ldy8qqgrncxxqd4y1sgiq3airg3dy URL - http://beta.quicklisp.org/archive/trivial-features/2019-07-10/trivial-features-20190710-git.tgz - MD5 3907b044e00a812ebae989134fe57c55 NAME trivial-features FILENAME - trivial-features DEPS NIL DEPENDENCIES NIL VERSION 20190710-git SIBLINGS + 0h0xxkp7vciq5yj6a1b5k76h7mzqgb5f9v25nssijgp738nmkni2 URL + http://beta.quicklisp.org/archive/trivial-features/2020-07-15/trivial-features-20200715-git.tgz + MD5 bb88b3e55713474bad3ef90f215f3560 NAME trivial-features FILENAME + trivial-features DEPS NIL DEPENDENCIES NIL VERSION 20200715-git SIBLINGS (trivial-features-tests) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-file-size.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-file-size.nix index 5b92cf9ec59..892e1d49d50 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-file-size.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-file-size.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''trivial-file-size''; - version = ''20180131-git''; + version = ''20200427-git''; parasites = [ "trivial-file-size/tests" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."fiveam" args."uiop" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivial-file-size/2018-01-31/trivial-file-size-20180131-git.tgz''; - sha256 = ''1dhbj764rxw8ndr2l06g5lszzvxis8fjbp71i3l2y9zmdm0k5zrd''; + url = ''http://beta.quicklisp.org/archive/trivial-file-size/2020-04-27/trivial-file-size-20200427-git.tgz''; + sha256 = ''1vspkgygrldbjb4gdm1fsn04j50rwil41x0fvvm4fxm84rwrscsa''; }; packageName = "trivial-file-size"; @@ -20,10 +20,10 @@ rec { overrides = x: x; } /* (SYSTEM trivial-file-size DESCRIPTION Stat a file's size. SHA256 - 1dhbj764rxw8ndr2l06g5lszzvxis8fjbp71i3l2y9zmdm0k5zrd URL - http://beta.quicklisp.org/archive/trivial-file-size/2018-01-31/trivial-file-size-20180131-git.tgz - MD5 ac921679334dd8bd12f927f0bd806f4b NAME trivial-file-size FILENAME + 1vspkgygrldbjb4gdm1fsn04j50rwil41x0fvvm4fxm84rwrscsa URL + http://beta.quicklisp.org/archive/trivial-file-size/2020-04-27/trivial-file-size-20200427-git.tgz + MD5 1e1952c60c1711869cd6b87b9bc25b52 NAME trivial-file-size FILENAME trivial-file-size DEPS ((NAME fiveam FILENAME fiveam) (NAME uiop FILENAME uiop)) DEPENDENCIES - (fiveam uiop) VERSION 20180131-git SIBLINGS NIL PARASITES + (fiveam uiop) VERSION 20200427-git SIBLINGS NIL PARASITES (trivial-file-size/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-garbage.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-garbage.nix index c629bb3548d..ce1f75522aa 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-garbage.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-garbage.nix @@ -1,7 +1,7 @@ args @ { fetchurl, ... }: rec { baseName = ''trivial-garbage''; - version = ''20190521-git''; + version = ''20200925-git''; parasites = [ "trivial-garbage/tests" ]; @@ -10,8 +10,8 @@ rec { deps = [ args."rt" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivial-garbage/2019-05-21/trivial-garbage-20190521-git.tgz''; - sha256 = ''0yhb7rkrbcfgghwvbw13nvmr86v19ka6qb53j8n89c7r270d8fdl''; + url = ''http://beta.quicklisp.org/archive/trivial-garbage/2020-09-25/trivial-garbage-20200925-git.tgz''; + sha256 = ''00iw2iw6qzji9b2gwy798l54jdk185sxh1k7m2qd9srs8s730k83''; }; packageName = "trivial-garbage"; @@ -21,8 +21,8 @@ rec { } /* (SYSTEM trivial-garbage DESCRIPTION Portable finalizers, weak hash-tables and weak pointers. SHA256 - 0yhb7rkrbcfgghwvbw13nvmr86v19ka6qb53j8n89c7r270d8fdl URL - http://beta.quicklisp.org/archive/trivial-garbage/2019-05-21/trivial-garbage-20190521-git.tgz - MD5 38fb70797069d4402c6b0fe91f4ca5a8 NAME trivial-garbage FILENAME + 00iw2iw6qzji9b2gwy798l54jdk185sxh1k7m2qd9srs8s730k83 URL + http://beta.quicklisp.org/archive/trivial-garbage/2020-09-25/trivial-garbage-20200925-git.tgz + MD5 9d748d1d549f419ce474f35906707420 NAME trivial-garbage FILENAME trivial-garbage DEPS ((NAME rt FILENAME rt)) DEPENDENCIES (rt) VERSION - 20190521-git SIBLINGS NIL PARASITES (trivial-garbage/tests)) */ + 20200925-git SIBLINGS NIL PARASITES (trivial-garbage/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-gray-streams.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-gray-streams.nix index 2aee236ac0c..acefb692184 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-gray-streams.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-gray-streams.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''trivial-gray-streams''; - version = ''20181018-git''; + version = ''20200925-git''; description = ''Compatibility layer for Gray Streams (see http://www.cliki.net/Gray%20streams).''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivial-gray-streams/2018-10-18/trivial-gray-streams-20181018-git.tgz''; - sha256 = ''0a1dmf7m9zbv3p6f5mzb413cy4fz9ahaykqp3ik1a98ivy0i74iv''; + url = ''http://beta.quicklisp.org/archive/trivial-gray-streams/2020-09-25/trivial-gray-streams-20200925-git.tgz''; + sha256 = ''1mg31fwjixd04lfqbpzjan3cny1i478xm1a9l3p0i9m4dv4g2k2b''; }; packageName = "trivial-gray-streams"; @@ -19,8 +19,8 @@ rec { } /* (SYSTEM trivial-gray-streams DESCRIPTION Compatibility layer for Gray Streams (see http://www.cliki.net/Gray%20streams). - SHA256 0a1dmf7m9zbv3p6f5mzb413cy4fz9ahaykqp3ik1a98ivy0i74iv URL - http://beta.quicklisp.org/archive/trivial-gray-streams/2018-10-18/trivial-gray-streams-20181018-git.tgz - MD5 0a9f564079dc41ce10d7869d82cc0952 NAME trivial-gray-streams FILENAME - trivial-gray-streams DEPS NIL DEPENDENCIES NIL VERSION 20181018-git + SHA256 1mg31fwjixd04lfqbpzjan3cny1i478xm1a9l3p0i9m4dv4g2k2b URL + http://beta.quicklisp.org/archive/trivial-gray-streams/2020-09-25/trivial-gray-streams-20200925-git.tgz + MD5 123581593fc46fdbf1d631cf8f07e0dd NAME trivial-gray-streams FILENAME + trivial-gray-streams DEPS NIL DEPENDENCIES NIL VERSION 20200925-git SIBLINGS (trivial-gray-streams-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-main-thread.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-main-thread.nix new file mode 100644 index 00000000000..dc0de9da624 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-main-thread.nix @@ -0,0 +1,34 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''trivial-main-thread''; + version = ''20190710-git''; + + description = ''Compatibility library to run things in the main thread.''; + + deps = [ args."alexandria" args."array-utils" args."bordeaux-threads" args."dissect" args."simple-tasks" args."trivial-features" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/trivial-main-thread/2019-07-10/trivial-main-thread-20190710-git.tgz''; + sha256 = ''1zj12rc29rrff5grmi7sjxfzdv78khbb4sg43hy2cb33hykpvg2h''; + }; + + packageName = "trivial-main-thread"; + + asdFilesToKeep = ["trivial-main-thread.asd"]; + overrides = x: x; +} +/* (SYSTEM trivial-main-thread DESCRIPTION + Compatibility library to run things in the main thread. SHA256 + 1zj12rc29rrff5grmi7sjxfzdv78khbb4sg43hy2cb33hykpvg2h URL + http://beta.quicklisp.org/archive/trivial-main-thread/2019-07-10/trivial-main-thread-20190710-git.tgz + MD5 ab95906f1831aa5b40f271eebdfe11a3 NAME trivial-main-thread FILENAME + trivial-main-thread DEPS + ((NAME alexandria FILENAME alexandria) + (NAME array-utils FILENAME array-utils) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME dissect FILENAME dissect) (NAME simple-tasks FILENAME simple-tasks) + (NAME trivial-features FILENAME trivial-features)) + DEPENDENCIES + (alexandria array-utils bordeaux-threads dissect simple-tasks + trivial-features) + VERSION 20190710-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-mimes.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-mimes.nix index f02d9e0dc2c..2e2888444e5 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-mimes.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-mimes.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''trivial-mimes''; - version = ''20190710-git''; + version = ''20200715-git''; description = ''Tiny library to detect mime types in files.''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivial-mimes/2019-07-10/trivial-mimes-20190710-git.tgz''; - sha256 = ''0z6m26gs0ilqs183xb4a5acpka9md10szbbdpm5xzjrhl15nb4jn''; + url = ''http://beta.quicklisp.org/archive/trivial-mimes/2020-07-15/trivial-mimes-20200715-git.tgz''; + sha256 = ''10mk1v5ad0m3bg5pl7lqhh827jvg5jb896807vmi8wznwk7zaif1''; }; packageName = "trivial-mimes"; @@ -19,8 +19,8 @@ rec { } /* (SYSTEM trivial-mimes DESCRIPTION Tiny library to detect mime types in files. SHA256 - 0z6m26gs0ilqs183xb4a5acpka9md10szbbdpm5xzjrhl15nb4jn URL - http://beta.quicklisp.org/archive/trivial-mimes/2019-07-10/trivial-mimes-20190710-git.tgz - MD5 b7fa1cb9382a2a562343c6ca87b1b4ac NAME trivial-mimes FILENAME - trivial-mimes DEPS NIL DEPENDENCIES NIL VERSION 20190710-git SIBLINGS NIL + 10mk1v5ad0m3bg5pl7lqhh827jvg5jb896807vmi8wznwk7zaif1 URL + http://beta.quicklisp.org/archive/trivial-mimes/2020-07-15/trivial-mimes-20200715-git.tgz + MD5 6f400805470232e87b3f69b9239b2b55 NAME trivial-mimes FILENAME + trivial-mimes DEPS NIL DEPENDENCIES NIL VERSION 20200715-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-package-local-nicknames.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-package-local-nicknames.nix new file mode 100644 index 00000000000..9cd37f80723 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-package-local-nicknames.nix @@ -0,0 +1,26 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''trivial-package-local-nicknames''; + version = ''20200610-git''; + + description = ''Portability library for package-local nicknames''; + + deps = [ ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/trivial-package-local-nicknames/2020-06-10/trivial-package-local-nicknames-20200610-git.tgz''; + sha256 = ''1wabkcwz0v144rb2w3rvxlcj264indfnvlyigk1wds7nq0c8lwk5''; + }; + + packageName = "trivial-package-local-nicknames"; + + asdFilesToKeep = ["trivial-package-local-nicknames.asd"]; + overrides = x: x; +} +/* (SYSTEM trivial-package-local-nicknames DESCRIPTION + Portability library for package-local nicknames SHA256 + 1wabkcwz0v144rb2w3rvxlcj264indfnvlyigk1wds7nq0c8lwk5 URL + http://beta.quicklisp.org/archive/trivial-package-local-nicknames/2020-06-10/trivial-package-local-nicknames-20200610-git.tgz + MD5 b3620521d3400ad5910878139bc86fcc NAME trivial-package-local-nicknames + FILENAME trivial-package-local-nicknames DEPS NIL DEPENDENCIES NIL VERSION + 20200610-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-utf-8.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-utf-8.nix index 00a484f11bf..e01eac48a2d 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-utf-8.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/trivial-utf-8.nix @@ -1,17 +1,17 @@ args @ { fetchurl, ... }: rec { baseName = ''trivial-utf-8''; - version = ''20111001-darcs''; + version = ''20200925-git''; - parasites = [ "trivial-utf-8-tests" ]; + parasites = [ "trivial-utf-8/doc" "trivial-utf-8/tests" ]; - description = ''System lacks description''; + description = ''A small library for doing UTF-8-based input and output.''; - deps = [ ]; + deps = [ args."mgl-pax" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/trivial-utf-8/2011-10-01/trivial-utf-8-20111001-darcs.tgz''; - sha256 = ''1lmg185s6w3rzsz3xa41k5w9xw32bi288ifhrxincy8iv92w65wb''; + url = ''http://beta.quicklisp.org/archive/trivial-utf-8/2020-09-25/trivial-utf-8-20200925-git.tgz''; + sha256 = ''06v9jif4f5xyl5jd7ldg69ds7cypf72xl7nda5q55fssmgcydi1b''; }; packageName = "trivial-utf-8"; @@ -19,9 +19,11 @@ rec { asdFilesToKeep = ["trivial-utf-8.asd"]; overrides = x: x; } -/* (SYSTEM trivial-utf-8 DESCRIPTION System lacks description SHA256 - 1lmg185s6w3rzsz3xa41k5w9xw32bi288ifhrxincy8iv92w65wb URL - http://beta.quicklisp.org/archive/trivial-utf-8/2011-10-01/trivial-utf-8-20111001-darcs.tgz - MD5 0206c4ba7a6c0b9b23762f244aca6614 NAME trivial-utf-8 FILENAME - trivial-utf-8 DEPS NIL DEPENDENCIES NIL VERSION 20111001-darcs SIBLINGS NIL - PARASITES (trivial-utf-8-tests)) */ +/* (SYSTEM trivial-utf-8 DESCRIPTION + A small library for doing UTF-8-based input and output. SHA256 + 06v9jif4f5xyl5jd7ldg69ds7cypf72xl7nda5q55fssmgcydi1b URL + http://beta.quicklisp.org/archive/trivial-utf-8/2020-09-25/trivial-utf-8-20200925-git.tgz + MD5 799ece1f87cc4a83e81e598bc6b1dd1d NAME trivial-utf-8 FILENAME + trivial-utf-8 DEPS ((NAME mgl-pax FILENAME mgl-pax)) DEPENDENCIES (mgl-pax) + VERSION 20200925-git SIBLINGS NIL PARASITES + (trivial-utf-8/doc trivial-utf-8/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/uax-15.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/uax-15.nix new file mode 100644 index 00000000000..a2980a9d40e --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/uax-15.nix @@ -0,0 +1,30 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''uax-15''; + version = ''20200325-git''; + + parasites = [ "uax-15/tests" ]; + + description = ''Common lisp implementation of Unicode normalization functions :nfc, :nfd, :nfkc and :nfkd (Uax-15)''; + + deps = [ args."cl-ppcre" args."fiveam" args."split-sequence" args."uiop" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/uax-15/2020-03-25/uax-15-20200325-git.tgz''; + sha256 = ''0nld8a95fy0nfni8g663786cz5q3x63bxymx0jlaknb6lfibb6pc''; + }; + + packageName = "uax-15"; + + asdFilesToKeep = ["uax-15.asd"]; + overrides = x: x; +} +/* (SYSTEM uax-15 DESCRIPTION + Common lisp implementation of Unicode normalization functions :nfc, :nfd, :nfkc and :nfkd (Uax-15) + SHA256 0nld8a95fy0nfni8g663786cz5q3x63bxymx0jlaknb6lfibb6pc URL + http://beta.quicklisp.org/archive/uax-15/2020-03-25/uax-15-20200325-git.tgz + MD5 95b8883fa0e85189f701a40c292b8828 NAME uax-15 FILENAME uax-15 DEPS + ((NAME cl-ppcre FILENAME cl-ppcre) (NAME fiveam FILENAME fiveam) + (NAME split-sequence FILENAME split-sequence) (NAME uiop FILENAME uiop)) + DEPENDENCIES (cl-ppcre fiveam split-sequence uiop) VERSION 20200325-git + SIBLINGS NIL PARASITES (uax-15/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/uiop.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/uiop.nix index 18f1b74edbd..ab96b032257 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/uiop.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/uiop.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''uiop''; - version = ''3.3.3''; + version = ''3.3.4''; description = ''System lacks description''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/uiop/2019-05-21/uiop-3.3.3.tgz''; - sha256 = ''1r89bqjmz1919l3wlmd32p416jzpacy3glkhiwnf1crkja27iagm''; + url = ''http://beta.quicklisp.org/archive/uiop/2020-02-18/uiop-3.3.4.tgz''; + sha256 = ''0n0fp55ivwi6gzhaywdkngnk2snpp9nn3mz5rq3pnrwldi9q7aav''; }; packageName = "uiop"; @@ -18,7 +18,7 @@ rec { overrides = x: x; } /* (SYSTEM uiop DESCRIPTION System lacks description SHA256 - 1r89bqjmz1919l3wlmd32p416jzpacy3glkhiwnf1crkja27iagm URL - http://beta.quicklisp.org/archive/uiop/2019-05-21/uiop-3.3.3.tgz MD5 - 64d561117f048ad8621eff7a6173d65e NAME uiop FILENAME uiop DEPS NIL - DEPENDENCIES NIL VERSION 3.3.3 SIBLINGS (asdf-driver) PARASITES NIL) */ + 0n0fp55ivwi6gzhaywdkngnk2snpp9nn3mz5rq3pnrwldi9q7aav URL + http://beta.quicklisp.org/archive/uiop/2020-02-18/uiop-3.3.4.tgz MD5 + b13a79a5aede43c97428c1cac86d6c2e NAME uiop FILENAME uiop DEPS NIL + DEPENDENCIES NIL VERSION 3.3.4 SIBLINGS (asdf-driver) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/unix-options.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/unix-options.nix new file mode 100644 index 00000000000..7243d5a17ed --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/unix-options.nix @@ -0,0 +1,25 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''unix-options''; + version = ''20151031-git''; + + description = ''Easy to use command line option parser''; + + deps = [ ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/unix-options/2015-10-31/unix-options-20151031-git.tgz''; + sha256 = ''0c9vbvvyx5qwvns87624gzxjcbdkbkcwssg29cxjfv3ci3qwqcd5''; + }; + + packageName = "unix-options"; + + asdFilesToKeep = ["unix-options.asd"]; + overrides = x: x; +} +/* (SYSTEM unix-options DESCRIPTION Easy to use command line option parser + SHA256 0c9vbvvyx5qwvns87624gzxjcbdkbkcwssg29cxjfv3ci3qwqcd5 URL + http://beta.quicklisp.org/archive/unix-options/2015-10-31/unix-options-20151031-git.tgz + MD5 3bbdeafbef3e7a2e94b9756bf173f636 NAME unix-options FILENAME + unix-options DEPS NIL DEPENDENCIES NIL VERSION 20151031-git SIBLINGS NIL + PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/unix-opts.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/unix-opts.nix index 4af27c449a3..8475b8e4ffd 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/unix-opts.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/unix-opts.nix @@ -1,15 +1,17 @@ args @ { fetchurl, ... }: rec { baseName = ''unix-opts''; - version = ''20180430-git''; + version = ''20200925-git''; + + parasites = [ "unix-opts/tests" ]; description = ''minimalistic parser of command line arguments''; deps = [ ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/unix-opts/2018-04-30/unix-opts-20180430-git.tgz''; - sha256 = ''05glzp47kn022jkbbvhnygaibrqnpr44q19lwhm20h4nkpkj3968''; + url = ''http://beta.quicklisp.org/archive/unix-opts/2020-09-25/unix-opts-20200925-git.tgz''; + sha256 = ''0y7bg825l8my7kpk4iwx0n8wn7rgy7bir60kb0s55g3x0nx5vx35''; }; packageName = "unix-opts"; @@ -18,8 +20,8 @@ rec { overrides = x: x; } /* (SYSTEM unix-opts DESCRIPTION minimalistic parser of command line arguments - SHA256 05glzp47kn022jkbbvhnygaibrqnpr44q19lwhm20h4nkpkj3968 URL - http://beta.quicklisp.org/archive/unix-opts/2018-04-30/unix-opts-20180430-git.tgz - MD5 2875ea0a1f5c49ef2697bb1046c4c4e5 NAME unix-opts FILENAME unix-opts DEPS - NIL DEPENDENCIES NIL VERSION 20180430-git SIBLINGS (unix-opts-tests) - PARASITES NIL) */ + SHA256 0y7bg825l8my7kpk4iwx0n8wn7rgy7bir60kb0s55g3x0nx5vx35 URL + http://beta.quicklisp.org/archive/unix-opts/2020-09-25/unix-opts-20200925-git.tgz + MD5 cdde0f71cfa437636d20509b4072df0c NAME unix-opts FILENAME unix-opts DEPS + NIL DEPENDENCIES NIL VERSION 20200925-git SIBLINGS NIL PARASITES + (unix-opts/tests)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/usocket-server.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/usocket-server.nix new file mode 100644 index 00000000000..04a09a8ab40 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/usocket-server.nix @@ -0,0 +1,31 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''usocket-server''; + version = ''usocket-0.8.3''; + + description = ''Universal socket library for Common Lisp (server side)''; + + deps = [ args."alexandria" args."bordeaux-threads" args."split-sequence" args."usocket" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/usocket/2019-12-27/usocket-0.8.3.tgz''; + sha256 = ''19gl72r9jqms8slzn7i7bww2cqng9mhiqqhhccadlrx2xv6d3lm7''; + }; + + packageName = "usocket-server"; + + asdFilesToKeep = ["usocket-server.asd"]; + overrides = x: x; +} +/* (SYSTEM usocket-server DESCRIPTION + Universal socket library for Common Lisp (server side) SHA256 + 19gl72r9jqms8slzn7i7bww2cqng9mhiqqhhccadlrx2xv6d3lm7 URL + http://beta.quicklisp.org/archive/usocket/2019-12-27/usocket-0.8.3.tgz MD5 + b1103034f32565487ab3b6eb92c0ca2b NAME usocket-server FILENAME + usocket-server DEPS + ((NAME alexandria FILENAME alexandria) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME split-sequence FILENAME split-sequence) + (NAME usocket FILENAME usocket)) + DEPENDENCIES (alexandria bordeaux-threads split-sequence usocket) VERSION + usocket-0.8.3 SIBLINGS (usocket-test usocket) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/utilities_dot_print-items.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/utilities_dot_print-items.nix new file mode 100644 index 00000000000..b672d0c2ec5 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/utilities_dot_print-items.nix @@ -0,0 +1,30 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''utilities_dot_print-items''; + version = ''20190813-git''; + + parasites = [ "utilities.print-items/test" ]; + + description = ''A protocol for flexible and composable printing.''; + + deps = [ args."alexandria" args."fiveam" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/utilities.print-items/2019-08-13/utilities.print-items-20190813-git.tgz''; + sha256 = ''12l4kzz621qfcg8p5qzyxp4n4hh9wdlpiziykwb4c80g32rdwkc2''; + }; + + packageName = "utilities.print-items"; + + asdFilesToKeep = ["utilities.print-items.asd"]; + overrides = x: x; +} +/* (SYSTEM utilities.print-items DESCRIPTION + A protocol for flexible and composable printing. SHA256 + 12l4kzz621qfcg8p5qzyxp4n4hh9wdlpiziykwb4c80g32rdwkc2 URL + http://beta.quicklisp.org/archive/utilities.print-items/2019-08-13/utilities.print-items-20190813-git.tgz + MD5 0f26580bb5d3587ed1815f70976b2a0a NAME utilities.print-items FILENAME + utilities_dot_print-items DEPS + ((NAME alexandria FILENAME alexandria) (NAME fiveam FILENAME fiveam)) + DEPENDENCIES (alexandria fiveam) VERSION 20190813-git SIBLINGS NIL + PARASITES (utilities.print-items/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/utilities_dot_print-tree.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/utilities_dot_print-tree.nix new file mode 100644 index 00000000000..80ff6d9ff76 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/utilities_dot_print-tree.nix @@ -0,0 +1,31 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''utilities_dot_print-tree''; + version = ''20200325-git''; + + parasites = [ "utilities.print-tree/test" ]; + + description = ''This system provides simple facilities for printing tree structures.''; + + deps = [ args."alexandria" args."fiveam" args."uiop" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/utilities.print-tree/2020-03-25/utilities.print-tree-20200325-git.tgz''; + sha256 = ''1nam8g2ppzkzpkwwhmil9y68is43ljpvc7hd64zxp4zsaqab5dww''; + }; + + packageName = "utilities.print-tree"; + + asdFilesToKeep = ["utilities.print-tree.asd"]; + overrides = x: x; +} +/* (SYSTEM utilities.print-tree DESCRIPTION + This system provides simple facilities for printing tree structures. SHA256 + 1nam8g2ppzkzpkwwhmil9y68is43ljpvc7hd64zxp4zsaqab5dww URL + http://beta.quicklisp.org/archive/utilities.print-tree/2020-03-25/utilities.print-tree-20200325-git.tgz + MD5 618bf5b42c415a44a1566f4f96a2c69a NAME utilities.print-tree FILENAME + utilities_dot_print-tree DEPS + ((NAME alexandria FILENAME alexandria) (NAME fiveam FILENAME fiveam) + (NAME uiop FILENAME uiop)) + DEPENDENCIES (alexandria fiveam uiop) VERSION 20200325-git SIBLINGS NIL + PARASITES (utilities.print-tree/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/uuid.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/uuid.nix index bfd84514622..43ae799961d 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/uuid.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/uuid.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: -{ +rec { baseName = ''uuid''; - version = ''20130813-git''; + version = ''20200715-git''; description = ''UUID Generation''; - deps = [ args."ironclad" args."nibbles" args."trivial-utf-8" ]; + deps = [ args."alexandria" args."bordeaux-threads" args."ironclad" args."trivial-utf-8" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/uuid/2013-08-13/uuid-20130813-git.tgz''; - sha256 = ''1ph88gizpkxqigfrkgmq0vd3qkgpxd9zjy6qyr0ic4xdyyymg1hf''; + url = ''http://beta.quicklisp.org/archive/uuid/2020-07-15/uuid-20200715-git.tgz''; + sha256 = ''1ymir6hgax1vbbcgyprnwbsx224ih03a55v10l35xridwyzhzrx0''; }; packageName = "uuid"; @@ -18,10 +18,12 @@ args @ { fetchurl, ... }: overrides = x: x; } /* (SYSTEM uuid DESCRIPTION UUID Generation SHA256 - 1ph88gizpkxqigfrkgmq0vd3qkgpxd9zjy6qyr0ic4xdyyymg1hf URL - http://beta.quicklisp.org/archive/uuid/2013-08-13/uuid-20130813-git.tgz MD5 - e9029d9437573ec2ffa2b474adf95daf NAME uuid FILENAME uuid DEPS - ((NAME ironclad FILENAME ironclad) (NAME nibbles FILENAME nibbles) + 1ymir6hgax1vbbcgyprnwbsx224ih03a55v10l35xridwyzhzrx0 URL + http://beta.quicklisp.org/archive/uuid/2020-07-15/uuid-20200715-git.tgz MD5 + e550de5e4e0f8cc9dc92aff0b488a991 NAME uuid FILENAME uuid DEPS + ((NAME alexandria FILENAME alexandria) + (NAME bordeaux-threads FILENAME bordeaux-threads) + (NAME ironclad FILENAME ironclad) (NAME trivial-utf-8 FILENAME trivial-utf-8)) - DEPENDENCIES (ironclad nibbles trivial-utf-8) VERSION 20130813-git SIBLINGS - NIL PARASITES NIL) */ + DEPENDENCIES (alexandria bordeaux-threads ironclad trivial-utf-8) VERSION + 20200715-git SIBLINGS NIL PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/woo.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/woo.nix index ecb0ba3762e..78c2e30d7ee 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-output/woo.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/woo.nix @@ -1,15 +1,15 @@ args @ { fetchurl, ... }: rec { baseName = ''woo''; - version = ''20191130-git''; + version = ''20200427-git''; description = ''An asynchronous HTTP server written in Common Lisp''; deps = [ args."alexandria" args."babel" args."bordeaux-threads" args."cffi" args."cffi-grovel" args."cffi-toolchain" args."cl-utilities" args."clack-socket" args."fast-http" args."fast-io" args."flexi-streams" args."lev" args."proc-parse" args."quri" args."smart-buffer" args."split-sequence" args."static-vectors" args."swap-bytes" args."trivial-features" args."trivial-gray-streams" args."trivial-utf-8" args."vom" args."xsubseq" ]; src = fetchurl { - url = ''http://beta.quicklisp.org/archive/woo/2019-11-30/woo-20191130-git.tgz''; - sha256 = ''18pw094i6damqsjx0v9jymvib0dhlr5s5bly1dphfnvfz5czs6j2''; + url = ''http://beta.quicklisp.org/archive/woo/2020-04-27/woo-20200427-git.tgz''; + sha256 = ''1mmgwgf9n74zab96x1n4faij30l2vk19xy74fcp0xnpj4lrp7v29''; }; packageName = "woo"; @@ -18,9 +18,9 @@ rec { overrides = x: x; } /* (SYSTEM woo DESCRIPTION An asynchronous HTTP server written in Common Lisp - SHA256 18pw094i6damqsjx0v9jymvib0dhlr5s5bly1dphfnvfz5czs6j2 URL - http://beta.quicklisp.org/archive/woo/2019-11-30/woo-20191130-git.tgz MD5 - a876d194ed1ccb7439e3f3b6da63760e NAME woo FILENAME woo DEPS + SHA256 1mmgwgf9n74zab96x1n4faij30l2vk19xy74fcp0xnpj4lrp7v29 URL + http://beta.quicklisp.org/archive/woo/2020-04-27/woo-20200427-git.tgz MD5 + 9bbd96692e37dd61195f8bd57a654c65 NAME woo FILENAME woo DEPS ((NAME alexandria FILENAME alexandria) (NAME babel FILENAME babel) (NAME bordeaux-threads FILENAME bordeaux-threads) (NAME cffi FILENAME cffi) (NAME cffi-grovel FILENAME cffi-grovel) @@ -43,4 +43,4 @@ rec { cl-utilities clack-socket fast-http fast-io flexi-streams lev proc-parse quri smart-buffer split-sequence static-vectors swap-bytes trivial-features trivial-gray-streams trivial-utf-8 vom xsubseq) - VERSION 20191130-git SIBLINGS (clack-handler-woo woo-test) PARASITES NIL) */ + VERSION 20200427-git SIBLINGS (clack-handler-woo woo-test) PARASITES NIL) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-output/xml_dot_location.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-output/xml_dot_location.nix new file mode 100644 index 00000000000..35854cd6b96 --- /dev/null +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-output/xml_dot_location.nix @@ -0,0 +1,47 @@ +args @ { fetchurl, ... }: +rec { + baseName = ''xml_dot_location''; + version = ''20200325-git''; + + parasites = [ "xml.location/test" ]; + + description = ''This system provides a convenient interface for + manipulating XML data. It is inspired by the xmltio library.''; + + deps = [ args."alexandria" args."anaphora" args."babel" args."cl-ppcre" args."closer-mop" args."closure-common" args."cxml" args."cxml-stp" args."iterate" args."let-plus" args."lift" args."more-conditions" args."parse-number" args."puri" args."split-sequence" args."trivial-features" args."trivial-gray-streams" args."xpath" args."yacc" ]; + + src = fetchurl { + url = ''http://beta.quicklisp.org/archive/xml.location/2020-03-25/xml.location-20200325-git.tgz''; + sha256 = ''0wfccj1p1al0w9pc5rhxpsvm3wb2lr5fc4cfjyg751pwsasjikwx''; + }; + + packageName = "xml.location"; + + asdFilesToKeep = ["xml.location.asd"]; + overrides = x: x; +} +/* (SYSTEM xml.location DESCRIPTION + This system provides a convenient interface for + manipulating XML data. It is inspired by the xmltio library. + SHA256 0wfccj1p1al0w9pc5rhxpsvm3wb2lr5fc4cfjyg751pwsasjikwx URL + http://beta.quicklisp.org/archive/xml.location/2020-03-25/xml.location-20200325-git.tgz + MD5 90cf4fd2450ba562c7f9657391dacb1d NAME xml.location FILENAME + xml_dot_location DEPS + ((NAME alexandria FILENAME alexandria) (NAME anaphora FILENAME anaphora) + (NAME babel FILENAME babel) (NAME cl-ppcre FILENAME cl-ppcre) + (NAME closer-mop FILENAME closer-mop) + (NAME closure-common FILENAME closure-common) (NAME cxml FILENAME cxml) + (NAME cxml-stp FILENAME cxml-stp) (NAME iterate FILENAME iterate) + (NAME let-plus FILENAME let-plus) (NAME lift FILENAME lift) + (NAME more-conditions FILENAME more-conditions) + (NAME parse-number FILENAME parse-number) (NAME puri FILENAME puri) + (NAME split-sequence FILENAME split-sequence) + (NAME trivial-features FILENAME trivial-features) + (NAME trivial-gray-streams FILENAME trivial-gray-streams) + (NAME xpath FILENAME xpath) (NAME yacc FILENAME yacc)) + DEPENDENCIES + (alexandria anaphora babel cl-ppcre closer-mop closure-common cxml cxml-stp + iterate let-plus lift more-conditions parse-number puri split-sequence + trivial-features trivial-gray-streams xpath yacc) + VERSION 20200325-git SIBLINGS (xml.location-and-local-time) PARASITES + (xml.location/test)) */ diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-overrides.nix b/pkgs/development/lisp-modules/quicklisp-to-nix-overrides.nix index 909ddc5d1a9..96d5867a3b3 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-overrides.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-overrides.nix @@ -32,9 +32,9 @@ in ''; preInstall = '' type gcc - mkdir -p "$out/lib/common-lisp/" + mkdir -p "$out/lib/common-lisp/" cp -r . "$out/lib/common-lisp/cl-fuse/" - "gcc" "-x" "c" "$out/lib/common-lisp/cl-fuse/fuse-launcher.c-minus" "-fPIC" "--shared" "-lfuse" "-o" "$out/lib/common-lisp/cl-fuse/libfuse-launcher.so" + "gcc" "-x" "c" "$out/lib/common-lisp/cl-fuse/fuse-launcher.c-minus" "-fPIC" "--shared" "-lfuse" "-o" "$out/lib/common-lisp/cl-fuse/libfuse-launcher.so" ''; }; }; @@ -105,18 +105,6 @@ $out/lib/common-lisp/query-fs" ''; }; }; - serapeum = x: { - overrides = y: (x.overrides y) //{ - # Override src until quicklisp catches up to 65837f8 (see serapeum - # issue #42) - src = pkgs.fetchFromGitHub { - owner = "ruricolist"; - repo = "serapeum"; - rev = "65837f8a0d65b36369ec8d000fff5c29a395b5fe"; - sha256 = "0clwf81r2lvk1rbfvk91s9zmbkas9imf57ilqclw12mxaxlfsnbw"; - }; - }; - }; sqlite = x: { propagatedBuildInputs = [pkgs.sqlite]; overrides = y: (x.overrides y) // { @@ -134,15 +122,15 @@ $out/lib/common-lisp/query-fs" @@ -155,7 +155,7 @@ ,(unique-dir-name))) (user-homedir-pathname))) - + -(defvar *fasl-directory* (default-fasl-dir) +(defvar *fasl-directory* #P"$out/lib/common-lisp/swank/fasl/" "The directory where fasl files should be placed.") - + (defun binary-pathname (src-pathname binary-dir) @@ -277,12 +277,7 @@ (contrib-dir src-dir)))) - + (defun delete-stale-contrib-fasl-files (swank-files contrib-files fasl-dir) - (let ((newest (reduce #'max (mapcar #'file-write-date swank-files)))) - (dolist (src contrib-files) @@ -151,7 +139,7 @@ $out/lib/common-lisp/query-fs" - (<= (file-write-date fasl) newest)) - (delete-file fasl)))))) + (declare (ignore swank-files contrib-files fasl-dir))) - + (defun compile-contribs (&key (src-dir (contrib-dir *source-directory*)) (fasl-dir (contrib-dir *fasl-directory*)) EOD @@ -159,9 +147,6 @@ $out/lib/common-lisp/query-fs" }; }; uiop = x: { - parasites = (x.parasites or []) ++ [ - "uiop/version" - ]; overrides = y: (x.overrides y) // { postInstall = ((x.overrides y).postInstall or "") + '' cp -r "${pkgs.asdf}/lib/common-lisp/asdf/uiop/contrib" "$out/lib/common-lisp/uiop" @@ -200,9 +185,18 @@ $out/lib/common-lisp/query-fs" parasites = pkgs.lib.filter (x: x!= "buildnode-test") x.parasites; }; postmodern = x: { - overrides = y : (x.overrides y) // { - meta.broken = true; # 2018-04-10 - }; + asdFilesToKeep = (x.asdFilesToKeep or []) ++ ["postmodern.asd" "simple-date.asd"]; + parasites = (pkgs.lib.filter (x: x!= "postmodern/tests") x.parasites) ++ + ["simple-date/postgres-glue"]; + deps = pkgs.lib.filter + (x: x.name != quicklisp-to-nix-packages.simple-date.name) + x.deps; + }; + s-sql = x: { + parasites = pkgs.lib.filter (x: x!= "s-sql/tests") x.parasites; + deps = pkgs.lib.filter + (x: x.name != quicklisp-to-nix-packages.postmodern.name) + x.deps; }; split-sequence = x: { overrides = y: (x.overrides y) // { @@ -218,4 +212,23 @@ $out/lib/common-lisp/query-fs" ''; }; }; + dbi = x: { + parasites = []; + deps = pkgs.lib.filter + (x: + ( + x.name != quicklisp-to-nix-packages.dbd-mysql.name && + x.name != quicklisp-to-nix-packages.dbd-postgres.name && + x.name != quicklisp-to-nix-packages.dbd-sqlite3.name && + x.name != quicklisp-to-nix-packages.dbi-test.name && + true)) + x.deps; + }; + cl-cffi-gtk-glib = addNativeLibs [pkgs.glib]; + cl-cffi-gtk-gdk-pixbuf = addNativeLibs [pkgs.gdk_pixbuf]; + cl-cffi-gtk-cairo = addNativeLibs [pkgs.cairo]; + cl-cffi-gtk-pango = addNativeLibs [pkgs.pango]; + cl-cffi-gtk-gdk = addNativeLibs [pkgs.gtk3]; + cl-cffi-gtk-gtk3 = addNativeLibs [pkgs.gtk3]; + cl-webkit2 = addNativeLibs [pkgs.webkitgtk]; } diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix-systems.txt b/pkgs/development/lisp-modules/quicklisp-to-nix-systems.txt index 4df1884efd1..52d626888a3 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix-systems.txt +++ b/pkgs/development/lisp-modules/quicklisp-to-nix-systems.txt @@ -1,6 +1,9 @@ -cl-prevalence 3bmd +access +acclimation alexandria +anaphora +arnesi array-utils asdf-system-connections babel @@ -9,119 +12,163 @@ bordeaux-threads caveman cffi cffi-grovel +chanl chipz +chunga circular-streams -cl+ssl +clack +clack-v1-compat +cl-annot cl-ansi-text cl-async cl-async-base cl-async-repl cl-async-ssl cl-base64 +cl-cffi-gtk cl-cli cl-colors +cl-containers cl-cookie cl-css cl-csv cl-dbi +cl-dot cl-emb +cl-fad cl-fuse cl-fuse-meta-fs cl-hooks -cl-html-parse cl-html5-parser +cl-html-parse +cl-interpol cl-jpeg cl-json cl-l10n cl-libuv +cl-locale cl-mysql +closer-mop +closure-common +closure-html +cl-paths-ttf cl-pdf cl-ppcre cl-ppcre-template cl-ppcre-unicode +cl-prevalence cl-protobufs +cl-qprint cl-reexport +cl-slice cl-smtp -cl-syntax-annot -cl-syntax-anonfun -cl-syntax-markup -cl-test-more -cl-typesetting -cl-unicode -cl-unification -cl-utilities -cl-vectors -cl-who -clack -clack-v1-compat -closer-mop -closure-html clsql clsql-postgresql clsql-postgresql-socket clsql-sqlite3 clss +cl+ssl +cl-store +cl-syntax +cl-syntax-annot +cl-syntax-anonfun +cl-syntax-markup +cl-test-more +cl-typesetting +clump +cl-unicode +cl-unification +cl-utilities +cl-vectors +cl-webkit2 +cl-who clx -clx-truetype +collectors command-line-arguments css-lite css-selectors css-selectors-simple-tree css-selectors-stp cxml +cxml-stp dbd-mysql dbd-postgres dbd-sqlite3 dbus dexador +djula documentation-utils drakma +enchant esrap esrap-peg external-program +fare-csv +fare-mop +fare-quasiquote +fare-utils fast-http fast-io fiveam flexi-streams form-fiddle fset +gettext http-body hu.dwim.asdf +hu.dwim.defclass-star hunchentoot idna ieee-floats +inferior-shell iolib ironclad iterate +jonathan lack let-plus lev lfarm-client lfarm-server lfarm-ssl +lift lisp-namespace local-time log4cl lparallel lquery marshal +md5 +metabang-bind +metatilities-base misc-extensions mk-string-metrics +moptilities +more-conditions mt19937 +named-readtables +net-telent-date nibbles optima +osicat parenscript +parse-number +parser-combinators +parser.common-rules pcall plump +postmodern proc-parse prove -prove prove-asdf +puri query-fs quri +rfc2388 salza2 serapeum simple-date +simple-date-time smart-buffer split-sequence sqlite @@ -130,20 +177,31 @@ str stumpwm swank swap-bytes +symbol-munger trivia trivial-backtrace trivial-clipboard +trivial-features +trivial-garbage +trivial-gray-streams trivial-indent +trivial-main-thread trivial-mimes +trivial-package-local-nicknames trivial-types trivial-utf-8 uffi +unix-options unix-opts usocket +utilities.print-items +utilities.print-tree +uuid woo wookie xembed xkeyboard +xml.location xmls xsubseq yason diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix.nix b/pkgs/development/lisp-modules/quicklisp-to-nix.nix index 2e23385175b..11244ec84a6 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix.nix +++ b/pkgs/development/lisp-modules/quicklisp-to-nix.nix @@ -6,14 +6,105 @@ let quicklisp-to-nix-packages = rec { buildLispPackage = callPackage ./define-package.nix; qlOverrides = callPackage ./quicklisp-to-nix-overrides.nix {}; - "xpath_slash_test" = quicklisp-to-nix-packages."xpath"; - - - "unit-test" = buildLispPackage + "pythonic-string-reader" = buildLispPackage ((f: x: (x // (f x))) - (qlOverrides."unit-test" or (x: {})) - (import ./quicklisp-to-nix-output/unit-test.nix { + (qlOverrides."pythonic-string-reader" or (x: {})) + (import ./quicklisp-to-nix-output/pythonic-string-reader.nix { inherit fetchurl; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + })); + + + "html-encode" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."html-encode" or (x: {})) + (import ./quicklisp-to-nix-output/html-encode.nix { + inherit fetchurl; + })); + + + "colorize" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."colorize" or (x: {})) + (import ./quicklisp-to-nix-output/colorize.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "html-encode" = quicklisp-to-nix-packages."html-encode"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + })); + + + "_3bmd-ext-code-blocks" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."_3bmd-ext-code-blocks" or (x: {})) + (import ./quicklisp-to-nix-output/_3bmd-ext-code-blocks.nix { + inherit fetchurl; + "_3bmd" = quicklisp-to-nix-packages."_3bmd"; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "colorize" = quicklisp-to-nix-packages."colorize"; + "esrap" = quicklisp-to-nix-packages."esrap"; + "html-encode" = quicklisp-to-nix-packages."html-encode"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + })); + + + "dbi-test" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."dbi-test" or (x: {})) + (import ./quicklisp-to-nix-output/dbi-test.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "dbi" = quicklisp-to-nix-packages."dbi"; + "dissect" = quicklisp-to-nix-packages."dissect"; + "rove" = quicklisp-to-nix-packages."rove"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; + "trivial-types" = quicklisp-to-nix-packages."trivial-types"; + })); + + + "clunit2" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."clunit2" or (x: {})) + (import ./quicklisp-to-nix-output/clunit2.nix { + inherit fetchurl; + })); + + + "mgl-pax" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."mgl-pax" or (x: {})) + (import ./quicklisp-to-nix-output/mgl-pax.nix { + inherit fetchurl; + "_3bmd" = quicklisp-to-nix-packages."_3bmd"; + "_3bmd-ext-code-blocks" = quicklisp-to-nix-packages."_3bmd-ext-code-blocks"; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cl-fad" = quicklisp-to-nix-packages."cl-fad"; + "colorize" = quicklisp-to-nix-packages."colorize"; + "esrap" = quicklisp-to-nix-packages."esrap"; + "html-encode" = quicklisp-to-nix-packages."html-encode"; + "ironclad" = quicklisp-to-nix-packages."ironclad"; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + "pythonic-string-reader" = quicklisp-to-nix-packages."pythonic-string-reader"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "swank" = quicklisp-to-nix-packages."swank"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + })); + + + "simple-tasks" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."simple-tasks" or (x: {})) + (import ./quicklisp-to-nix-output/simple-tasks.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "array-utils" = quicklisp-to-nix-packages."array-utils"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "dissect" = quicklisp-to-nix-packages."dissect"; })); @@ -29,23 +120,6 @@ let quicklisp-to-nix-packages = rec { })); - "type-i" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."type-i" or (x: {})) - (import ./quicklisp-to-nix-output/type-i.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "closer-mop" = quicklisp-to-nix-packages."closer-mop"; - "introspect-environment" = quicklisp-to-nix-packages."introspect-environment"; - "lisp-namespace" = quicklisp-to-nix-packages."lisp-namespace"; - "trivia_dot_level0" = quicklisp-to-nix-packages."trivia_dot_level0"; - "trivia_dot_level1" = quicklisp-to-nix-packages."trivia_dot_level1"; - "trivia_dot_level2" = quicklisp-to-nix-packages."trivia_dot_level2"; - "trivia_dot_trivial" = quicklisp-to-nix-packages."trivia_dot_trivial"; - "trivial-cltl2" = quicklisp-to-nix-packages."trivial-cltl2"; - })); - - "trivial-macroexpand-all" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."trivial-macroexpand-all" or (x: {})) @@ -64,6 +138,160 @@ let quicklisp-to-nix-packages = rec { })); + "parse-declarations-1_dot_0" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."parse-declarations-1_dot_0" or (x: {})) + (import ./quicklisp-to-nix-output/parse-declarations-1_dot_0.nix { + inherit fetchurl; + })); + + + "simple-date_slash_postgres-glue" = quicklisp-to-nix-packages."simple-date"; + + + "s-sql_slash_tests" = quicklisp-to-nix-packages."s-sql"; + + + "s-sql" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."s-sql" or (x: {})) + (import ./quicklisp-to-nix-output/s-sql.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cl-base64" = quicklisp-to-nix-packages."cl-base64"; + "cl-postgres" = quicklisp-to-nix-packages."cl-postgres"; + "cl-postgres_slash_tests" = quicklisp-to-nix-packages."cl-postgres_slash_tests"; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + "cl-unicode" = quicklisp-to-nix-packages."cl-unicode"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "fiveam" = quicklisp-to-nix-packages."fiveam"; + "global-vars" = quicklisp-to-nix-packages."global-vars"; + "ironclad" = quicklisp-to-nix-packages."ironclad"; + "md5" = quicklisp-to-nix-packages."md5"; + "postmodern" = quicklisp-to-nix-packages."postmodern"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "uax-15" = quicklisp-to-nix-packages."uax-15"; + "usocket" = quicklisp-to-nix-packages."usocket"; + })); + + + "global-vars" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."global-vars" or (x: {})) + (import ./quicklisp-to-nix-output/global-vars.nix { + inherit fetchurl; + })); + + + "cl-postgres_slash_tests" = quicklisp-to-nix-packages."cl-postgres"; + + + "stefil" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."stefil" or (x: {})) + (import ./quicklisp-to-nix-output/stefil.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "metabang-bind" = quicklisp-to-nix-packages."metabang-bind"; + "swank" = quicklisp-to-nix-packages."swank"; + })); + + + "lfarm-common" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."lfarm-common" or (x: {})) + (import ./quicklisp-to-nix-output/lfarm-common.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cl-store" = quicklisp-to-nix-packages."cl-store"; + "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; + "usocket" = quicklisp-to-nix-packages."usocket"; + })); + + + "iolib_dot_grovel" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."iolib_dot_grovel" or (x: {})) + (import ./quicklisp-to-nix-output/iolib_dot_grovel.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "cffi" = quicklisp-to-nix-packages."cffi"; + "iolib_dot_asdf" = quicklisp-to-nix-packages."iolib_dot_asdf"; + "iolib_dot_base" = quicklisp-to-nix-packages."iolib_dot_base"; + "iolib_dot_common-lisp" = quicklisp-to-nix-packages."iolib_dot_common-lisp"; + "iolib_dot_conf" = quicklisp-to-nix-packages."iolib_dot_conf"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "uiop" = quicklisp-to-nix-packages."uiop"; + })); + + + "iolib_dot_conf" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."iolib_dot_conf" or (x: {})) + (import ./quicklisp-to-nix-output/iolib_dot_conf.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "iolib_dot_asdf" = quicklisp-to-nix-packages."iolib_dot_asdf"; + })); + + + "iolib_dot_common-lisp" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."iolib_dot_common-lisp" or (x: {})) + (import ./quicklisp-to-nix-output/iolib_dot_common-lisp.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "iolib_dot_asdf" = quicklisp-to-nix-packages."iolib_dot_asdf"; + "iolib_dot_conf" = quicklisp-to-nix-packages."iolib_dot_conf"; + })); + + + "iolib_dot_base" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."iolib_dot_base" or (x: {})) + (import ./quicklisp-to-nix-output/iolib_dot_base.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "iolib_dot_asdf" = quicklisp-to-nix-packages."iolib_dot_asdf"; + "iolib_dot_common-lisp" = quicklisp-to-nix-packages."iolib_dot_common-lisp"; + "iolib_dot_conf" = quicklisp-to-nix-packages."iolib_dot_conf"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + })); + + + "iolib_dot_asdf" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."iolib_dot_asdf" or (x: {})) + (import ./quicklisp-to-nix-output/iolib_dot_asdf.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + })); + + + "type-i" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."type-i" or (x: {})) + (import ./quicklisp-to-nix-output/type-i.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "introspect-environment" = quicklisp-to-nix-packages."introspect-environment"; + "lisp-namespace" = quicklisp-to-nix-packages."lisp-namespace"; + "trivia_dot_level0" = quicklisp-to-nix-packages."trivia_dot_level0"; + "trivia_dot_level1" = quicklisp-to-nix-packages."trivia_dot_level1"; + "trivia_dot_level2" = quicklisp-to-nix-packages."trivia_dot_level2"; + "trivia_dot_trivial" = quicklisp-to-nix-packages."trivia_dot_trivial"; + "trivial-cltl2" = quicklisp-to-nix-packages."trivial-cltl2"; + })); + + "trivial-cltl2" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."trivial-cltl2" or (x: {})) @@ -159,14 +387,6 @@ let quicklisp-to-nix-packages = rec { })); - "parse-declarations-1_dot_0" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."parse-declarations-1_dot_0" or (x: {})) - (import ./quicklisp-to-nix-output/parse-declarations-1_dot_0.nix { - inherit fetchurl; - })); - - "introspect-environment" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."introspect-environment" or (x: {})) @@ -175,22 +395,6 @@ let quicklisp-to-nix-packages = rec { })); - "global-vars" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."global-vars" or (x: {})) - (import ./quicklisp-to-nix-output/global-vars.nix { - inherit fetchurl; - })); - - - "fare-utils" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."fare-utils" or (x: {})) - (import ./quicklisp-to-nix-output/fare-utils.nix { - inherit fetchurl; - })); - - "fare-quasiquote-readtable" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."fare-quasiquote-readtable" or (x: {})) @@ -210,8 +414,16 @@ let quicklisp-to-nix-packages = rec { "alexandria" = quicklisp-to-nix-packages."alexandria"; "closer-mop" = quicklisp-to-nix-packages."closer-mop"; "fare-quasiquote" = quicklisp-to-nix-packages."fare-quasiquote"; + "fare-quasiquote-readtable" = quicklisp-to-nix-packages."fare-quasiquote-readtable"; "fare-utils" = quicklisp-to-nix-packages."fare-utils"; - "optima" = quicklisp-to-nix-packages."optima"; + "lisp-namespace" = quicklisp-to-nix-packages."lisp-namespace"; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + "trivia_dot_level0" = quicklisp-to-nix-packages."trivia_dot_level0"; + "trivia_dot_level1" = quicklisp-to-nix-packages."trivia_dot_level1"; + "trivia_dot_level2" = quicklisp-to-nix-packages."trivia_dot_level2"; + "trivia_dot_quasiquote" = quicklisp-to-nix-packages."trivia_dot_quasiquote"; + "trivia_dot_trivial" = quicklisp-to-nix-packages."trivia_dot_trivial"; + "trivial-cltl2" = quicklisp-to-nix-packages."trivial-cltl2"; })); @@ -226,113 +438,14 @@ let quicklisp-to-nix-packages = rec { "fare-quasiquote-optima" = quicklisp-to-nix-packages."fare-quasiquote-optima"; "fare-quasiquote-readtable" = quicklisp-to-nix-packages."fare-quasiquote-readtable"; "fare-utils" = quicklisp-to-nix-packages."fare-utils"; + "lisp-namespace" = quicklisp-to-nix-packages."lisp-namespace"; "named-readtables" = quicklisp-to-nix-packages."named-readtables"; - "optima" = quicklisp-to-nix-packages."optima"; - })); - - - "fare-quasiquote" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."fare-quasiquote" or (x: {})) - (import ./quicklisp-to-nix-output/fare-quasiquote.nix { - inherit fetchurl; - "fare-utils" = quicklisp-to-nix-packages."fare-utils"; - })); - - - "stefil" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."stefil" or (x: {})) - (import ./quicklisp-to-nix-output/stefil.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "iterate" = quicklisp-to-nix-packages."iterate"; - "metabang-bind" = quicklisp-to-nix-packages."metabang-bind"; - "swank" = quicklisp-to-nix-packages."swank"; - })); - - - "lfarm-common" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."lfarm-common" or (x: {})) - (import ./quicklisp-to-nix-output/lfarm-common.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; - "cl-store" = quicklisp-to-nix-packages."cl-store"; - "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; - "split-sequence" = quicklisp-to-nix-packages."split-sequence"; - "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; - "usocket" = quicklisp-to-nix-packages."usocket"; - })); - - - "rt" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."rt" or (x: {})) - (import ./quicklisp-to-nix-output/rt.nix { - inherit fetchurl; - })); - - - "iolib_dot_grovel" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."iolib_dot_grovel" or (x: {})) - (import ./quicklisp-to-nix-output/iolib_dot_grovel.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "babel" = quicklisp-to-nix-packages."babel"; - "cffi" = quicklisp-to-nix-packages."cffi"; - "iolib_dot_asdf" = quicklisp-to-nix-packages."iolib_dot_asdf"; - "iolib_dot_base" = quicklisp-to-nix-packages."iolib_dot_base"; - "iolib_dot_common-lisp" = quicklisp-to-nix-packages."iolib_dot_common-lisp"; - "iolib_dot_conf" = quicklisp-to-nix-packages."iolib_dot_conf"; - "split-sequence" = quicklisp-to-nix-packages."split-sequence"; - "trivial-features" = quicklisp-to-nix-packages."trivial-features"; - "uiop" = quicklisp-to-nix-packages."uiop"; - })); - - - "iolib_dot_conf" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."iolib_dot_conf" or (x: {})) - (import ./quicklisp-to-nix-output/iolib_dot_conf.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "iolib_dot_asdf" = quicklisp-to-nix-packages."iolib_dot_asdf"; - })); - - - "iolib_dot_common-lisp" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."iolib_dot_common-lisp" or (x: {})) - (import ./quicklisp-to-nix-output/iolib_dot_common-lisp.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "iolib_dot_asdf" = quicklisp-to-nix-packages."iolib_dot_asdf"; - "iolib_dot_conf" = quicklisp-to-nix-packages."iolib_dot_conf"; - })); - - - "iolib_dot_base" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."iolib_dot_base" or (x: {})) - (import ./quicklisp-to-nix-output/iolib_dot_base.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "iolib_dot_asdf" = quicklisp-to-nix-packages."iolib_dot_asdf"; - "iolib_dot_common-lisp" = quicklisp-to-nix-packages."iolib_dot_common-lisp"; - "iolib_dot_conf" = quicklisp-to-nix-packages."iolib_dot_conf"; - "split-sequence" = quicklisp-to-nix-packages."split-sequence"; - })); - - - "iolib_dot_asdf" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."iolib_dot_asdf" or (x: {})) - (import ./quicklisp-to-nix-output/iolib_dot_asdf.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; + "trivia_dot_level0" = quicklisp-to-nix-packages."trivia_dot_level0"; + "trivia_dot_level1" = quicklisp-to-nix-packages."trivia_dot_level1"; + "trivia_dot_level2" = quicklisp-to-nix-packages."trivia_dot_level2"; + "trivia_dot_quasiquote" = quicklisp-to-nix-packages."trivia_dot_quasiquote"; + "trivia_dot_trivial" = quicklisp-to-nix-packages."trivia_dot_trivial"; + "trivial-cltl2" = quicklisp-to-nix-packages."trivial-cltl2"; })); @@ -368,18 +481,44 @@ let quicklisp-to-nix-packages = rec { })); + "uax-15" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."uax-15" or (x: {})) + (import ./quicklisp-to-nix-output/uax-15.nix { + inherit fetchurl; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + "fiveam" = quicklisp-to-nix-packages."fiveam"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "uiop" = quicklisp-to-nix-packages."uiop"; + })); + + "cl-postgres" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-postgres" or (x: {})) (import ./quicklisp-to-nix-output/cl-postgres.nix { inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cl-base64" = quicklisp-to-nix-packages."cl-base64"; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; "fiveam" = quicklisp-to-nix-packages."fiveam"; + "ironclad" = quicklisp-to-nix-packages."ironclad"; "md5" = quicklisp-to-nix-packages."md5"; + "simple-date" = quicklisp-to-nix-packages."simple-date"; + "simple-date_slash_postgres-glue" = quicklisp-to-nix-packages."simple-date_slash_postgres-glue"; "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "uax-15" = quicklisp-to-nix-packages."uax-15"; "usocket" = quicklisp-to-nix-packages."usocket"; })); + "xpath_slash_test" = quicklisp-to-nix-packages."xpath"; + + + "cxml_slash_test" = quicklisp-to-nix-packages."cxml"; + + "xpath" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."xpath" or (x: {})) @@ -398,27 +537,6 @@ let quicklisp-to-nix-packages = rec { })); - "cxml-stp" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cxml-stp" or (x: {})) - (import ./quicklisp-to-nix-output/cxml-stp.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "babel" = quicklisp-to-nix-packages."babel"; - "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; - "closure-common" = quicklisp-to-nix-packages."closure-common"; - "cxml" = quicklisp-to-nix-packages."cxml"; - "parse-number" = quicklisp-to-nix-packages."parse-number"; - "puri" = quicklisp-to-nix-packages."puri"; - "rt" = quicklisp-to-nix-packages."rt"; - "trivial-features" = quicklisp-to-nix-packages."trivial-features"; - "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; - "xpath" = quicklisp-to-nix-packages."xpath"; - "xpath_slash_test" = quicklisp-to-nix-packages."xpath_slash_test"; - "yacc" = quicklisp-to-nix-packages."yacc"; - })); - - "yacc" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."yacc" or (x: {})) @@ -427,29 +545,6 @@ let quicklisp-to-nix-packages = rec { })); - "symbol-munger" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."symbol-munger" or (x: {})) - (import ./quicklisp-to-nix-output/symbol-munger.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "iterate" = quicklisp-to-nix-packages."iterate"; - })); - - - "collectors" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."collectors" or (x: {})) - (import ./quicklisp-to-nix-output/collectors.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "closer-mop" = quicklisp-to-nix-packages."closer-mop"; - "iterate" = quicklisp-to-nix-packages."iterate"; - "lisp-unit2" = quicklisp-to-nix-packages."lisp-unit2"; - "symbol-munger" = quicklisp-to-nix-packages."symbol-munger"; - })); - - "buildnode-xhtml" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."buildnode-xhtml" or (x: {})) @@ -507,25 +602,6 @@ let quicklisp-to-nix-packages = rec { })); - "cl-store" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-store" or (x: {})) - (import ./quicklisp-to-nix-output/cl-store.nix { - inherit fetchurl; - "rt" = quicklisp-to-nix-packages."rt"; - })); - - - "cl-paths-ttf" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-paths-ttf" or (x: {})) - (import ./quicklisp-to-nix-output/cl-paths-ttf.nix { - inherit fetchurl; - "cl-paths" = quicklisp-to-nix-packages."cl-paths"; - "zpb-ttf" = quicklisp-to-nix-packages."zpb-ttf"; - })); - - "fiasco" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."fiasco" or (x: {})) @@ -536,24 +612,6 @@ let quicklisp-to-nix-packages = rec { })); - "clsql-uffi" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."clsql-uffi" or (x: {})) - (import ./quicklisp-to-nix-output/clsql-uffi.nix { - inherit fetchurl; - "clsql" = quicklisp-to-nix-packages."clsql"; - "uffi" = quicklisp-to-nix-packages."uffi"; - })); - - - "cl-paths" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-paths" or (x: {})) - (import ./quicklisp-to-nix-output/cl-paths.nix { - inherit fetchurl; - })); - - "cl-aa" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-aa" or (x: {})) @@ -562,6 +620,24 @@ let quicklisp-to-nix-packages = rec { })); + "clump-binary-tree" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."clump-binary-tree" or (x: {})) + (import ./quicklisp-to-nix-output/clump-binary-tree.nix { + inherit fetchurl; + "acclimation" = quicklisp-to-nix-packages."acclimation"; + })); + + + "clump-2-3-tree" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."clump-2-3-tree" or (x: {})) + (import ./quicklisp-to-nix-output/clump-2-3-tree.nix { + inherit fetchurl; + "acclimation" = quicklisp-to-nix-packages."acclimation"; + })); + + "cl-markup" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-markup" or (x: {})) @@ -578,6 +654,57 @@ let quicklisp-to-nix-packages = rec { })); + "clsql-uffi" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."clsql-uffi" or (x: {})) + (import ./quicklisp-to-nix-output/clsql-uffi.nix { + inherit fetchurl; + "clsql" = quicklisp-to-nix-packages."clsql"; + "uffi" = quicklisp-to-nix-packages."uffi"; + })); + + + "clunit" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."clunit" or (x: {})) + (import ./quicklisp-to-nix-output/clunit.nix { + inherit fetchurl; + })); + + + "usocket-server" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."usocket-server" or (x: {})) + (import ./quicklisp-to-nix-output/usocket-server.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "usocket" = quicklisp-to-nix-packages."usocket"; + })); + + + "s-xml" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."s-xml" or (x: {})) + (import ./quicklisp-to-nix-output/s-xml.nix { + inherit fetchurl; + })); + + + "s-sysdeps" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."s-sysdeps" or (x: {})) + (import ./quicklisp-to-nix-output/s-sysdeps.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "usocket" = quicklisp-to-nix-packages."usocket"; + "usocket-server" = quicklisp-to-nix-packages."usocket-server"; + })); + + "cl-ppcre-test" = quicklisp-to-nix-packages."cl-ppcre"; @@ -589,27 +716,10 @@ let quicklisp-to-nix-packages = rec { })); - "puri" = buildLispPackage + "cl-paths" = buildLispPackage ((f: x: (x // (f x))) - (qlOverrides."puri" or (x: {})) - (import ./quicklisp-to-nix-output/puri.nix { - inherit fetchurl; - "ptester" = quicklisp-to-nix-packages."ptester"; - })); - - - "parse-number" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."parse-number" or (x: {})) - (import ./quicklisp-to-nix-output/parse-number.nix { - inherit fetchurl; - })); - - - "metabang-bind" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."metabang-bind" or (x: {})) - (import ./quicklisp-to-nix-output/metabang-bind.nix { + (qlOverrides."cl-paths" or (x: {})) + (import ./quicklisp-to-nix-output/cl-paths.nix { inherit fetchurl; })); @@ -620,19 +730,6 @@ let quicklisp-to-nix-packages = rec { (import ./quicklisp-to-nix-output/hu_dot_dwim_dot_stefil.nix { inherit fetchurl; "alexandria" = quicklisp-to-nix-packages."alexandria"; - "hu_dot_dwim_dot_asdf" = quicklisp-to-nix-packages."hu_dot_dwim_dot_asdf"; - })); - - - "closure-common" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."closure-common" or (x: {})) - (import ./quicklisp-to-nix-output/closure-common.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "babel" = quicklisp-to-nix-packages."babel"; - "trivial-features" = quicklisp-to-nix-packages."trivial-features"; - "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; })); @@ -662,6 +759,14 @@ let quicklisp-to-nix-packages = rec { })); + "unit-test" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."unit-test" or (x: {})) + (import ./quicklisp-to-nix-output/unit-test.nix { + inherit fetchurl; + })); + + "dbi" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."dbi" or (x: {})) @@ -669,49 +774,141 @@ let quicklisp-to-nix-packages = rec { inherit fetchurl; "alexandria" = quicklisp-to-nix-packages."alexandria"; "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; - "cl-annot" = quicklisp-to-nix-packages."cl-annot"; - "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; - "cl-syntax-annot" = quicklisp-to-nix-packages."cl-syntax-annot"; + "cl-mysql" = quicklisp-to-nix-packages."cl-mysql"; + "cl-postgres" = quicklisp-to-nix-packages."cl-postgres"; "closer-mop" = quicklisp-to-nix-packages."closer-mop"; - "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + "dbd-mysql" = quicklisp-to-nix-packages."dbd-mysql"; + "dbd-postgres" = quicklisp-to-nix-packages."dbd-postgres"; + "dbd-sqlite3" = quicklisp-to-nix-packages."dbd-sqlite3"; + "dbi-test" = quicklisp-to-nix-packages."dbi-test"; + "rove" = quicklisp-to-nix-packages."rove"; "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "sqlite" = quicklisp-to-nix-packages."sqlite"; + "trivial-garbage" = quicklisp-to-nix-packages."trivial-garbage"; "trivial-types" = quicklisp-to-nix-packages."trivial-types"; })); - "lisp-unit2" = buildLispPackage + "cl-cffi-gtk-pango" = buildLispPackage ((f: x: (x // (f x))) - (qlOverrides."lisp-unit2" or (x: {})) - (import ./quicklisp-to-nix-output/lisp-unit2.nix { + (qlOverrides."cl-cffi-gtk-pango" or (x: {})) + (import ./quicklisp-to-nix-output/cl-cffi-gtk-pango.nix { inherit fetchurl; "alexandria" = quicklisp-to-nix-packages."alexandria"; - "cl-interpol" = quicklisp-to-nix-packages."cl-interpol"; - "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; - "cl-unicode" = quicklisp-to-nix-packages."cl-unicode"; - "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; + "babel" = quicklisp-to-nix-packages."babel"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cffi" = quicklisp-to-nix-packages."cffi"; + "cl-cffi-gtk-cairo" = quicklisp-to-nix-packages."cl-cffi-gtk-cairo"; + "cl-cffi-gtk-glib" = quicklisp-to-nix-packages."cl-cffi-gtk-glib"; + "cl-cffi-gtk-gobject" = quicklisp-to-nix-packages."cl-cffi-gtk-gobject"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; "iterate" = quicklisp-to-nix-packages."iterate"; - "named-readtables" = quicklisp-to-nix-packages."named-readtables"; - "symbol-munger" = quicklisp-to-nix-packages."symbol-munger"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "trivial-garbage" = quicklisp-to-nix-packages."trivial-garbage"; })); - "cl-interpol" = buildLispPackage + "cl-cffi-gtk-gobject" = buildLispPackage ((f: x: (x // (f x))) - (qlOverrides."cl-interpol" or (x: {})) - (import ./quicklisp-to-nix-output/cl-interpol.nix { + (qlOverrides."cl-cffi-gtk-gobject" or (x: {})) + (import ./quicklisp-to-nix-output/cl-cffi-gtk-gobject.nix { inherit fetchurl; - "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; - "cl-unicode" = quicklisp-to-nix-packages."cl-unicode"; - "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; - "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cffi" = quicklisp-to-nix-packages."cffi"; + "cl-cffi-gtk-glib" = quicklisp-to-nix-packages."cl-cffi-gtk-glib"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "trivial-garbage" = quicklisp-to-nix-packages."trivial-garbage"; })); - "lift" = buildLispPackage + "cl-cffi-gtk-glib" = buildLispPackage ((f: x: (x // (f x))) - (qlOverrides."lift" or (x: {})) - (import ./quicklisp-to-nix-output/lift.nix { + (qlOverrides."cl-cffi-gtk-glib" or (x: {})) + (import ./quicklisp-to-nix-output/cl-cffi-gtk-glib.nix { inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cffi" = quicklisp-to-nix-packages."cffi"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + })); + + + "cl-cffi-gtk-gio" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-cffi-gtk-gio" or (x: {})) + (import ./quicklisp-to-nix-output/cl-cffi-gtk-gio.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cffi" = quicklisp-to-nix-packages."cffi"; + "cl-cffi-gtk-glib" = quicklisp-to-nix-packages."cl-cffi-gtk-glib"; + "cl-cffi-gtk-gobject" = quicklisp-to-nix-packages."cl-cffi-gtk-gobject"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "trivial-garbage" = quicklisp-to-nix-packages."trivial-garbage"; + })); + + + "cl-cffi-gtk-gdk-pixbuf" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-cffi-gtk-gdk-pixbuf" or (x: {})) + (import ./quicklisp-to-nix-output/cl-cffi-gtk-gdk-pixbuf.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cffi" = quicklisp-to-nix-packages."cffi"; + "cl-cffi-gtk-glib" = quicklisp-to-nix-packages."cl-cffi-gtk-glib"; + "cl-cffi-gtk-gobject" = quicklisp-to-nix-packages."cl-cffi-gtk-gobject"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "trivial-garbage" = quicklisp-to-nix-packages."trivial-garbage"; + })); + + + "cl-cffi-gtk-gdk" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-cffi-gtk-gdk" or (x: {})) + (import ./quicklisp-to-nix-output/cl-cffi-gtk-gdk.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cffi" = quicklisp-to-nix-packages."cffi"; + "cl-cffi-gtk-cairo" = quicklisp-to-nix-packages."cl-cffi-gtk-cairo"; + "cl-cffi-gtk-gdk-pixbuf" = quicklisp-to-nix-packages."cl-cffi-gtk-gdk-pixbuf"; + "cl-cffi-gtk-gio" = quicklisp-to-nix-packages."cl-cffi-gtk-gio"; + "cl-cffi-gtk-glib" = quicklisp-to-nix-packages."cl-cffi-gtk-glib"; + "cl-cffi-gtk-gobject" = quicklisp-to-nix-packages."cl-cffi-gtk-gobject"; + "cl-cffi-gtk-pango" = quicklisp-to-nix-packages."cl-cffi-gtk-pango"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "trivial-garbage" = quicklisp-to-nix-packages."trivial-garbage"; + })); + + + "cl-cffi-gtk-cairo" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-cffi-gtk-cairo" or (x: {})) + (import ./quicklisp-to-nix-output/cl-cffi-gtk-cairo.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cffi" = quicklisp-to-nix-packages."cffi"; + "cl-cffi-gtk-glib" = quicklisp-to-nix-packages."cl-cffi-gtk-glib"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; })); @@ -728,6 +925,7 @@ let quicklisp-to-nix-packages = rec { (qlOverrides."kmrcl" or (x: {})) (import ./quicklisp-to-nix-output/kmrcl.nix { inherit fetchurl; + "rt" = quicklisp-to-nix-packages."rt"; })); @@ -742,23 +940,6 @@ let quicklisp-to-nix-packages = rec { })); - "trivial-gray-streams" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."trivial-gray-streams" or (x: {})) - (import ./quicklisp-to-nix-output/trivial-gray-streams.nix { - inherit fetchurl; - })); - - - "trivial-garbage" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."trivial-garbage" or (x: {})) - (import ./quicklisp-to-nix-output/trivial-garbage.nix { - inherit fetchurl; - "rt" = quicklisp-to-nix-packages."rt"; - })); - - "rove" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."rove" or (x: {})) @@ -770,22 +951,6 @@ let quicklisp-to-nix-packages = rec { })); - "rfc2388" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."rfc2388" or (x: {})) - (import ./quicklisp-to-nix-output/rfc2388.nix { - inherit fetchurl; - })); - - - "named-readtables" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."named-readtables" or (x: {})) - (import ./quicklisp-to-nix-output/named-readtables.nix { - inherit fetchurl; - })); - - "myway" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."myway" or (x: {})) @@ -802,14 +967,6 @@ let quicklisp-to-nix-packages = rec { })); - "md5" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."md5" or (x: {})) - (import ./quicklisp-to-nix-output/md5.nix { - inherit fetchurl; - })); - - "map-set" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."map-set" or (x: {})) @@ -826,7 +983,6 @@ let quicklisp-to-nix-packages = rec { "alexandria" = quicklisp-to-nix-packages."alexandria"; "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; "ironclad" = quicklisp-to-nix-packages."ironclad"; - "nibbles" = quicklisp-to-nix-packages."nibbles"; })); @@ -847,30 +1003,6 @@ let quicklisp-to-nix-packages = rec { })); - "jonathan" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."jonathan" or (x: {})) - (import ./quicklisp-to-nix-output/jonathan.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "babel" = quicklisp-to-nix-packages."babel"; - "cffi" = quicklisp-to-nix-packages."cffi"; - "cffi-grovel" = quicklisp-to-nix-packages."cffi-grovel"; - "cffi-toolchain" = quicklisp-to-nix-packages."cffi-toolchain"; - "cl-annot" = quicklisp-to-nix-packages."cl-annot"; - "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; - "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; - "cl-syntax-annot" = quicklisp-to-nix-packages."cl-syntax-annot"; - "fast-io" = quicklisp-to-nix-packages."fast-io"; - "named-readtables" = quicklisp-to-nix-packages."named-readtables"; - "proc-parse" = quicklisp-to-nix-packages."proc-parse"; - "static-vectors" = quicklisp-to-nix-packages."static-vectors"; - "trivial-features" = quicklisp-to-nix-packages."trivial-features"; - "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; - "trivial-types" = quicklisp-to-nix-packages."trivial-types"; - })); - - "do-urlencode" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."do-urlencode" or (x: {})) @@ -932,7 +1064,6 @@ let quicklisp-to-nix-packages = rec { "local-time" = quicklisp-to-nix-packages."local-time"; "md5" = quicklisp-to-nix-packages."md5"; "named-readtables" = quicklisp-to-nix-packages."named-readtables"; - "nibbles" = quicklisp-to-nix-packages."nibbles"; "proc-parse" = quicklisp-to-nix-packages."proc-parse"; "quri" = quicklisp-to-nix-packages."quri"; "rfc2388" = quicklisp-to-nix-packages."rfc2388"; @@ -987,16 +1118,6 @@ let quicklisp-to-nix-packages = rec { })); - "cl-syntax" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-syntax" or (x: {})) - (import ./quicklisp-to-nix-output/cl-syntax.nix { - inherit fetchurl; - "named-readtables" = quicklisp-to-nix-packages."named-readtables"; - "trivial-types" = quicklisp-to-nix-packages."trivial-types"; - })); - - "cl-project" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-project" or (x: {})) @@ -1004,11 +1125,10 @@ let quicklisp-to-nix-packages = rec { inherit fetchurl; "alexandria" = quicklisp-to-nix-packages."alexandria"; "anaphora" = quicklisp-to-nix-packages."anaphora"; - "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; "cl-ansi-text" = quicklisp-to-nix-packages."cl-ansi-text"; "cl-colors" = quicklisp-to-nix-packages."cl-colors"; + "cl-colors2" = quicklisp-to-nix-packages."cl-colors2"; "cl-emb" = quicklisp-to-nix-packages."cl-emb"; - "cl-fad" = quicklisp-to-nix-packages."cl-fad"; "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; "let-plus" = quicklisp-to-nix-packages."let-plus"; "local-time" = quicklisp-to-nix-packages."local-time"; @@ -1017,33 +1137,14 @@ let quicklisp-to-nix-packages = rec { })); - "cl-fad" = buildLispPackage + "cl-colors2" = buildLispPackage ((f: x: (x // (f x))) - (qlOverrides."cl-fad" or (x: {})) - (import ./quicklisp-to-nix-output/cl-fad.nix { + (qlOverrides."cl-colors2" or (x: {})) + (import ./quicklisp-to-nix-output/cl-colors2.nix { inherit fetchurl; "alexandria" = quicklisp-to-nix-packages."alexandria"; - "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; - "unit-test" = quicklisp-to-nix-packages."unit-test"; - })); - - - "cl-annot" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-annot" or (x: {})) - (import ./quicklisp-to-nix-output/cl-annot.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - })); - - - "chunga" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."chunga" or (x: {})) - (import ./quicklisp-to-nix-output/chunga.nix { - inherit fetchurl; - "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; + "clunit2" = quicklisp-to-nix-packages."clunit2"; })); @@ -1059,15 +1160,6 @@ let quicklisp-to-nix-packages = rec { })); - "anaphora" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."anaphora" or (x: {})) - (import ./quicklisp-to-nix-output/anaphora.nix { - inherit fetchurl; - "rt" = quicklisp-to-nix-packages."rt"; - })); - - "vom" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."vom" or (x: {})) @@ -1076,27 +1168,27 @@ let quicklisp-to-nix-packages = rec { })); - "trivial-features" = buildLispPackage + "rt" = buildLispPackage ((f: x: (x // (f x))) - (qlOverrides."trivial-features" or (x: {})) - (import ./quicklisp-to-nix-output/trivial-features.nix { + (qlOverrides."rt" or (x: {})) + (import ./quicklisp-to-nix-output/rt.nix { inherit fetchurl; })); - "s-xml" = buildLispPackage + "lisp-unit2" = buildLispPackage ((f: x: (x // (f x))) - (qlOverrides."s-xml" or (x: {})) - (import ./quicklisp-to-nix-output/s-xml.nix { - inherit fetchurl; - })); - - - "s-sysdeps" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."s-sysdeps" or (x: {})) - (import ./quicklisp-to-nix-output/s-sysdeps.nix { + (qlOverrides."lisp-unit2" or (x: {})) + (import ./quicklisp-to-nix-output/lisp-unit2.nix { inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "cl-interpol" = quicklisp-to-nix-packages."cl-interpol"; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + "cl-unicode" = quicklisp-to-nix-packages."cl-unicode"; + "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + "symbol-munger" = quicklisp-to-nix-packages."symbol-munger"; })); @@ -1127,6 +1219,33 @@ let quicklisp-to-nix-packages = rec { })); + "xml_dot_location" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."xml_dot_location" or (x: {})) + (import ./quicklisp-to-nix-output/xml_dot_location.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "anaphora" = quicklisp-to-nix-packages."anaphora"; + "babel" = quicklisp-to-nix-packages."babel"; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "closure-common" = quicklisp-to-nix-packages."closure-common"; + "cxml" = quicklisp-to-nix-packages."cxml"; + "cxml-stp" = quicklisp-to-nix-packages."cxml-stp"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "let-plus" = quicklisp-to-nix-packages."let-plus"; + "lift" = quicklisp-to-nix-packages."lift"; + "more-conditions" = quicklisp-to-nix-packages."more-conditions"; + "parse-number" = quicklisp-to-nix-packages."parse-number"; + "puri" = quicklisp-to-nix-packages."puri"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; + "xpath" = quicklisp-to-nix-packages."xpath"; + "yacc" = quicklisp-to-nix-packages."yacc"; + })); + + "xkeyboard" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."xkeyboard" or (x: {})) @@ -1213,6 +1332,39 @@ let quicklisp-to-nix-packages = rec { })); + "uuid" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."uuid" or (x: {})) + (import ./quicklisp-to-nix-output/uuid.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "ironclad" = quicklisp-to-nix-packages."ironclad"; + "trivial-utf-8" = quicklisp-to-nix-packages."trivial-utf-8"; + })); + + + "utilities_dot_print-tree" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."utilities_dot_print-tree" or (x: {})) + (import ./quicklisp-to-nix-output/utilities_dot_print-tree.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "fiveam" = quicklisp-to-nix-packages."fiveam"; + "uiop" = quicklisp-to-nix-packages."uiop"; + })); + + + "utilities_dot_print-items" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."utilities_dot_print-items" or (x: {})) + (import ./quicklisp-to-nix-output/utilities_dot_print-items.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "fiveam" = quicklisp-to-nix-packages."fiveam"; + })); + + "usocket" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."usocket" or (x: {})) @@ -1230,6 +1382,14 @@ let quicklisp-to-nix-packages = rec { })); + "unix-options" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."unix-options" or (x: {})) + (import ./quicklisp-to-nix-output/unix-options.nix { + inherit fetchurl; + })); + + "uffi" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."uffi" or (x: {})) @@ -1243,6 +1403,7 @@ let quicklisp-to-nix-packages = rec { (qlOverrides."trivial-utf-8" or (x: {})) (import ./quicklisp-to-nix-output/trivial-utf-8.nix { inherit fetchurl; + "mgl-pax" = quicklisp-to-nix-packages."mgl-pax"; })); @@ -1254,6 +1415,14 @@ let quicklisp-to-nix-packages = rec { })); + "trivial-package-local-nicknames" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."trivial-package-local-nicknames" or (x: {})) + (import ./quicklisp-to-nix-output/trivial-package-local-nicknames.nix { + inherit fetchurl; + })); + + "trivial-mimes" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."trivial-mimes" or (x: {})) @@ -1262,6 +1431,20 @@ let quicklisp-to-nix-packages = rec { })); + "trivial-main-thread" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."trivial-main-thread" or (x: {})) + (import ./quicklisp-to-nix-output/trivial-main-thread.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "array-utils" = quicklisp-to-nix-packages."array-utils"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "dissect" = quicklisp-to-nix-packages."dissect"; + "simple-tasks" = quicklisp-to-nix-packages."simple-tasks"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + })); + + "trivial-indent" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."trivial-indent" or (x: {})) @@ -1270,6 +1453,31 @@ let quicklisp-to-nix-packages = rec { })); + "trivial-gray-streams" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."trivial-gray-streams" or (x: {})) + (import ./quicklisp-to-nix-output/trivial-gray-streams.nix { + inherit fetchurl; + })); + + + "trivial-garbage" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."trivial-garbage" or (x: {})) + (import ./quicklisp-to-nix-output/trivial-garbage.nix { + inherit fetchurl; + "rt" = quicklisp-to-nix-packages."rt"; + })); + + + "trivial-features" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."trivial-features" or (x: {})) + (import ./quicklisp-to-nix-output/trivial-features.nix { + inherit fetchurl; + })); + + "trivial-clipboard" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."trivial-clipboard" or (x: {})) @@ -1307,6 +1515,16 @@ let quicklisp-to-nix-packages = rec { })); + "symbol-munger" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."symbol-munger" or (x: {})) + (import ./quicklisp-to-nix-output/symbol-munger.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "iterate" = quicklisp-to-nix-packages."iterate"; + })); + + "swap-bytes" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."swap-bytes" or (x: {})) @@ -1398,15 +1616,21 @@ let quicklisp-to-nix-packages = rec { })); + "simple-date-time" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."simple-date-time" or (x: {})) + (import ./quicklisp-to-nix-output/simple-date-time.nix { + inherit fetchurl; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + })); + + "simple-date" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."simple-date" or (x: {})) (import ./quicklisp-to-nix-output/simple-date.nix { inherit fetchurl; - "cl-postgres" = quicklisp-to-nix-packages."cl-postgres"; "fiveam" = quicklisp-to-nix-packages."fiveam"; - "md5" = quicklisp-to-nix-packages."md5"; - "usocket" = quicklisp-to-nix-packages."usocket"; })); @@ -1428,7 +1652,6 @@ let quicklisp-to-nix-packages = rec { "iterate" = quicklisp-to-nix-packages."iterate"; "lisp-namespace" = quicklisp-to-nix-packages."lisp-namespace"; "named-readtables" = quicklisp-to-nix-packages."named-readtables"; - "optima" = quicklisp-to-nix-packages."optima"; "parse-declarations-1_dot_0" = quicklisp-to-nix-packages."parse-declarations-1_dot_0"; "parse-number" = quicklisp-to-nix-packages."parse-number"; "split-sequence" = quicklisp-to-nix-packages."split-sequence"; @@ -1457,6 +1680,14 @@ let quicklisp-to-nix-packages = rec { })); + "rfc2388" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."rfc2388" or (x: {})) + (import ./quicklisp-to-nix-output/rfc2388.nix { + inherit fetchurl; + })); + + "quri" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."quri" or (x: {})) @@ -1495,6 +1726,15 @@ let quicklisp-to-nix-packages = rec { })); + "puri" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."puri" or (x: {})) + (import ./quicklisp-to-nix-output/puri.nix { + inherit fetchurl; + "ptester" = quicklisp-to-nix-packages."ptester"; + })); + + "prove-asdf" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."prove-asdf" or (x: {})) @@ -1512,6 +1752,7 @@ let quicklisp-to-nix-packages = rec { "anaphora" = quicklisp-to-nix-packages."anaphora"; "cl-ansi-text" = quicklisp-to-nix-packages."cl-ansi-text"; "cl-colors" = quicklisp-to-nix-packages."cl-colors"; + "cl-colors2" = quicklisp-to-nix-packages."cl-colors2"; "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; "let-plus" = quicklisp-to-nix-packages."let-plus"; "uiop" = quicklisp-to-nix-packages."uiop"; @@ -1529,6 +1770,34 @@ let quicklisp-to-nix-packages = rec { })); + "postmodern" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."postmodern" or (x: {})) + (import ./quicklisp-to-nix-output/postmodern.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cl-base64" = quicklisp-to-nix-packages."cl-base64"; + "cl-postgres" = quicklisp-to-nix-packages."cl-postgres"; + "cl-postgres_slash_tests" = quicklisp-to-nix-packages."cl-postgres_slash_tests"; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + "cl-unicode" = quicklisp-to-nix-packages."cl-unicode"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "fiveam" = quicklisp-to-nix-packages."fiveam"; + "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; + "global-vars" = quicklisp-to-nix-packages."global-vars"; + "ironclad" = quicklisp-to-nix-packages."ironclad"; + "md5" = quicklisp-to-nix-packages."md5"; + "s-sql" = quicklisp-to-nix-packages."s-sql"; + "s-sql_slash_tests" = quicklisp-to-nix-packages."s-sql_slash_tests"; + "simple-date" = quicklisp-to-nix-packages."simple-date"; + "simple-date_slash_postgres-glue" = quicklisp-to-nix-packages."simple-date_slash_postgres-glue"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "uax-15" = quicklisp-to-nix-packages."uax-15"; + "usocket" = quicklisp-to-nix-packages."usocket"; + })); + + "plump" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."plump" or (x: {})) @@ -1552,6 +1821,38 @@ let quicklisp-to-nix-packages = rec { })); + "parser_dot_common-rules" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."parser_dot_common-rules" or (x: {})) + (import ./quicklisp-to-nix-output/parser_dot_common-rules.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "anaphora" = quicklisp-to-nix-packages."anaphora"; + "esrap" = quicklisp-to-nix-packages."esrap"; + "fiveam" = quicklisp-to-nix-packages."fiveam"; + "let-plus" = quicklisp-to-nix-packages."let-plus"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + })); + + + "parser-combinators" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."parser-combinators" or (x: {})) + (import ./quicklisp-to-nix-output/parser-combinators.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "iterate" = quicklisp-to-nix-packages."iterate"; + })); + + + "parse-number" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."parse-number" or (x: {})) + (import ./quicklisp-to-nix-output/parse-number.nix { + inherit fetchurl; + })); + + "parenscript" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."parenscript" or (x: {})) @@ -1563,6 +1864,21 @@ let quicklisp-to-nix-packages = rec { })); + "osicat" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."osicat" or (x: {})) + (import ./quicklisp-to-nix-output/osicat.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "cffi" = quicklisp-to-nix-packages."cffi"; + "cffi-grovel" = quicklisp-to-nix-packages."cffi-grovel"; + "cffi-toolchain" = quicklisp-to-nix-packages."cffi-toolchain"; + "rt" = quicklisp-to-nix-packages."rt"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + })); + + "optima" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."optima" or (x: {})) @@ -1582,6 +1898,22 @@ let quicklisp-to-nix-packages = rec { })); + "net-telent-date" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."net-telent-date" or (x: {})) + (import ./quicklisp-to-nix-output/net-telent-date.nix { + inherit fetchurl; + })); + + + "named-readtables" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."named-readtables" or (x: {})) + (import ./quicklisp-to-nix-output/named-readtables.nix { + inherit fetchurl; + })); + + "mt19937" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."mt19937" or (x: {})) @@ -1590,6 +1922,27 @@ let quicklisp-to-nix-packages = rec { })); + "more-conditions" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."more-conditions" or (x: {})) + (import ./quicklisp-to-nix-output/more-conditions.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "fiveam" = quicklisp-to-nix-packages."fiveam"; + "let-plus" = quicklisp-to-nix-packages."let-plus"; + })); + + + "moptilities" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."moptilities" or (x: {})) + (import ./quicklisp-to-nix-output/moptilities.nix { + inherit fetchurl; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + })); + + "mk-string-metrics" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."mk-string-metrics" or (x: {})) @@ -1606,6 +1959,30 @@ let quicklisp-to-nix-packages = rec { })); + "metatilities-base" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."metatilities-base" or (x: {})) + (import ./quicklisp-to-nix-output/metatilities-base.nix { + inherit fetchurl; + })); + + + "metabang-bind" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."metabang-bind" or (x: {})) + (import ./quicklisp-to-nix-output/metabang-bind.nix { + inherit fetchurl; + })); + + + "md5" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."md5" or (x: {})) + (import ./quicklisp-to-nix-output/md5.nix { + inherit fetchurl; + })); + + "marshal" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."marshal" or (x: {})) @@ -1654,10 +2031,8 @@ let quicklisp-to-nix-packages = rec { (qlOverrides."local-time" or (x: {})) (import ./quicklisp-to-nix-output/local-time.nix { inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; - "cl-fad" = quicklisp-to-nix-packages."cl-fad"; "stefil" = quicklisp-to-nix-packages."stefil"; + "uiop" = quicklisp-to-nix-packages."uiop"; })); @@ -1670,6 +2045,14 @@ let quicklisp-to-nix-packages = rec { })); + "lift" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."lift" or (x: {})) + (import ./quicklisp-to-nix-output/lift.nix { + inherit fetchurl; + })); + + "lfarm-ssl" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."lfarm-ssl" or (x: {})) @@ -1757,7 +2140,30 @@ let quicklisp-to-nix-packages = rec { "ironclad" = quicklisp-to-nix-packages."ironclad"; "lack-component" = quicklisp-to-nix-packages."lack-component"; "lack-util" = quicklisp-to-nix-packages."lack-util"; - "nibbles" = quicklisp-to-nix-packages."nibbles"; + })); + + + "jonathan" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."jonathan" or (x: {})) + (import ./quicklisp-to-nix-output/jonathan.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "cffi" = quicklisp-to-nix-packages."cffi"; + "cffi-grovel" = quicklisp-to-nix-packages."cffi-grovel"; + "cffi-toolchain" = quicklisp-to-nix-packages."cffi-toolchain"; + "cl-annot" = quicklisp-to-nix-packages."cl-annot"; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; + "cl-syntax-annot" = quicklisp-to-nix-packages."cl-syntax-annot"; + "fast-io" = quicklisp-to-nix-packages."fast-io"; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + "proc-parse" = quicklisp-to-nix-packages."proc-parse"; + "static-vectors" = quicklisp-to-nix-packages."static-vectors"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; + "trivial-types" = quicklisp-to-nix-packages."trivial-types"; })); @@ -1776,7 +2182,6 @@ let quicklisp-to-nix-packages = rec { inherit fetchurl; "alexandria" = quicklisp-to-nix-packages."alexandria"; "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; - "nibbles" = quicklisp-to-nix-packages."nibbles"; "rt" = quicklisp-to-nix-packages."rt"; })); @@ -1802,6 +2207,36 @@ let quicklisp-to-nix-packages = rec { })); + "inferior-shell" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."inferior-shell" or (x: {})) + (import ./quicklisp-to-nix-output/inferior-shell.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "fare-mop" = quicklisp-to-nix-packages."fare-mop"; + "fare-quasiquote" = quicklisp-to-nix-packages."fare-quasiquote"; + "fare-quasiquote-extras" = quicklisp-to-nix-packages."fare-quasiquote-extras"; + "fare-quasiquote-optima" = quicklisp-to-nix-packages."fare-quasiquote-optima"; + "fare-quasiquote-readtable" = quicklisp-to-nix-packages."fare-quasiquote-readtable"; + "fare-utils" = quicklisp-to-nix-packages."fare-utils"; + "hu_dot_dwim_dot_stefil" = quicklisp-to-nix-packages."hu_dot_dwim_dot_stefil"; + "introspect-environment" = quicklisp-to-nix-packages."introspect-environment"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "lisp-namespace" = quicklisp-to-nix-packages."lisp-namespace"; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + "trivia" = quicklisp-to-nix-packages."trivia"; + "trivia_dot_balland2006" = quicklisp-to-nix-packages."trivia_dot_balland2006"; + "trivia_dot_level0" = quicklisp-to-nix-packages."trivia_dot_level0"; + "trivia_dot_level1" = quicklisp-to-nix-packages."trivia_dot_level1"; + "trivia_dot_level2" = quicklisp-to-nix-packages."trivia_dot_level2"; + "trivia_dot_quasiquote" = quicklisp-to-nix-packages."trivia_dot_quasiquote"; + "trivia_dot_trivial" = quicklisp-to-nix-packages."trivia_dot_trivial"; + "trivial-cltl2" = quicklisp-to-nix-packages."trivial-cltl2"; + "type-i" = quicklisp-to-nix-packages."type-i"; + })); + + "ieee-floats" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."ieee-floats" or (x: {})) @@ -1848,6 +2283,15 @@ let quicklisp-to-nix-packages = rec { })); + "hu_dot_dwim_dot_defclass-star" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."hu_dot_dwim_dot_defclass-star" or (x: {})) + (import ./quicklisp-to-nix-output/hu_dot_dwim_dot_defclass-star.nix { + inherit fetchurl; + "hu_dot_dwim_dot_asdf" = quicklisp-to-nix-packages."hu_dot_dwim_dot_asdf"; + })); + + "hu_dot_dwim_dot_asdf" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."hu_dot_dwim_dot_asdf" or (x: {})) @@ -1889,6 +2333,18 @@ let quicklisp-to-nix-packages = rec { })); + "gettext" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."gettext" or (x: {})) + (import ./quicklisp-to-nix-output/gettext.nix { + inherit fetchurl; + "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; + "yacc" = quicklisp-to-nix-packages."yacc"; + })); + + "fset" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."fset" or (x: {})) @@ -1896,6 +2352,7 @@ let quicklisp-to-nix-packages = rec { inherit fetchurl; "misc-extensions" = quicklisp-to-nix-packages."misc-extensions"; "mt19937" = quicklisp-to-nix-packages."mt19937"; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; })); @@ -1962,6 +2419,41 @@ let quicklisp-to-nix-packages = rec { })); + "fare-utils" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."fare-utils" or (x: {})) + (import ./quicklisp-to-nix-output/fare-utils.nix { + inherit fetchurl; + })); + + + "fare-quasiquote" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."fare-quasiquote" or (x: {})) + (import ./quicklisp-to-nix-output/fare-quasiquote.nix { + inherit fetchurl; + "fare-utils" = quicklisp-to-nix-packages."fare-utils"; + })); + + + "fare-mop" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."fare-mop" or (x: {})) + (import ./quicklisp-to-nix-output/fare-mop.nix { + inherit fetchurl; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "fare-utils" = quicklisp-to-nix-packages."fare-utils"; + })); + + + "fare-csv" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."fare-csv" or (x: {})) + (import ./quicklisp-to-nix-output/fare-csv.nix { + inherit fetchurl; + })); + + "external-program" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."external-program" or (x: {})) @@ -1994,6 +2486,18 @@ let quicklisp-to-nix-packages = rec { })); + "enchant" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."enchant" or (x: {})) + (import ./quicklisp-to-nix-output/enchant.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "cffi" = quicklisp-to-nix-packages."cffi"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + })); + + "drakma" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."drakma" or (x: {})) @@ -2027,6 +2531,43 @@ let quicklisp-to-nix-packages = rec { })); + "djula" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."djula" or (x: {})) + (import ./quicklisp-to-nix-output/djula.nix { + inherit fetchurl; + "access" = quicklisp-to-nix-packages."access"; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "anaphora" = quicklisp-to-nix-packages."anaphora"; + "arnesi" = quicklisp-to-nix-packages."arnesi"; + "babel" = quicklisp-to-nix-packages."babel"; + "cl-annot" = quicklisp-to-nix-packages."cl-annot"; + "cl-interpol" = quicklisp-to-nix-packages."cl-interpol"; + "cl-locale" = quicklisp-to-nix-packages."cl-locale"; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + "cl-slice" = quicklisp-to-nix-packages."cl-slice"; + "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; + "cl-syntax-annot" = quicklisp-to-nix-packages."cl-syntax-annot"; + "cl-unicode" = quicklisp-to-nix-packages."cl-unicode"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "collectors" = quicklisp-to-nix-packages."collectors"; + "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; + "gettext" = quicklisp-to-nix-packages."gettext"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "let-plus" = quicklisp-to-nix-packages."let-plus"; + "local-time" = quicklisp-to-nix-packages."local-time"; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + "parser-combinators" = quicklisp-to-nix-packages."parser-combinators"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "symbol-munger" = quicklisp-to-nix-packages."symbol-munger"; + "trivial-backtrace" = quicklisp-to-nix-packages."trivial-backtrace"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; + "trivial-types" = quicklisp-to-nix-packages."trivial-types"; + "yacc" = quicklisp-to-nix-packages."yacc"; + })); + + "dexador" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."dexador" or (x: {})) @@ -2043,7 +2584,6 @@ let quicklisp-to-nix-packages = rec { "cl_plus_ssl" = quicklisp-to-nix-packages."cl_plus_ssl"; "cl-base64" = quicklisp-to-nix-packages."cl-base64"; "cl-cookie" = quicklisp-to-nix-packages."cl-cookie"; - "cl-fad" = quicklisp-to-nix-packages."cl-fad"; "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; "cl-reexport" = quicklisp-to-nix-packages."cl-reexport"; "cl-utilities" = quicklisp-to-nix-packages."cl-utilities"; @@ -2091,19 +2631,13 @@ let quicklisp-to-nix-packages = rec { "babel" = quicklisp-to-nix-packages."babel"; "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; "cffi" = quicklisp-to-nix-packages."cffi"; - "cl-annot" = quicklisp-to-nix-packages."cl-annot"; - "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; - "cl-syntax-annot" = quicklisp-to-nix-packages."cl-syntax-annot"; "closer-mop" = quicklisp-to-nix-packages."closer-mop"; "dbi" = quicklisp-to-nix-packages."dbi"; "iterate" = quicklisp-to-nix-packages."iterate"; - "named-readtables" = quicklisp-to-nix-packages."named-readtables"; "split-sequence" = quicklisp-to-nix-packages."split-sequence"; "sqlite" = quicklisp-to-nix-packages."sqlite"; "trivial-features" = quicklisp-to-nix-packages."trivial-features"; "trivial-garbage" = quicklisp-to-nix-packages."trivial-garbage"; - "trivial-types" = quicklisp-to-nix-packages."trivial-types"; - "uiop" = quicklisp-to-nix-packages."uiop"; })); @@ -2114,17 +2648,16 @@ let quicklisp-to-nix-packages = rec { inherit fetchurl; "alexandria" = quicklisp-to-nix-packages."alexandria"; "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; - "cl-annot" = quicklisp-to-nix-packages."cl-annot"; + "cl-base64" = quicklisp-to-nix-packages."cl-base64"; "cl-postgres" = quicklisp-to-nix-packages."cl-postgres"; - "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; - "cl-syntax-annot" = quicklisp-to-nix-packages."cl-syntax-annot"; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; "closer-mop" = quicklisp-to-nix-packages."closer-mop"; "dbi" = quicklisp-to-nix-packages."dbi"; + "ironclad" = quicklisp-to-nix-packages."ironclad"; "md5" = quicklisp-to-nix-packages."md5"; - "named-readtables" = quicklisp-to-nix-packages."named-readtables"; "split-sequence" = quicklisp-to-nix-packages."split-sequence"; "trivial-garbage" = quicklisp-to-nix-packages."trivial-garbage"; - "trivial-types" = quicklisp-to-nix-packages."trivial-types"; + "uax-15" = quicklisp-to-nix-packages."uax-15"; "usocket" = quicklisp-to-nix-packages."usocket"; })); @@ -2138,16 +2671,33 @@ let quicklisp-to-nix-packages = rec { "babel" = quicklisp-to-nix-packages."babel"; "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; "cffi" = quicklisp-to-nix-packages."cffi"; - "cl-annot" = quicklisp-to-nix-packages."cl-annot"; "cl-mysql" = quicklisp-to-nix-packages."cl-mysql"; - "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; - "cl-syntax-annot" = quicklisp-to-nix-packages."cl-syntax-annot"; "closer-mop" = quicklisp-to-nix-packages."closer-mop"; "dbi" = quicklisp-to-nix-packages."dbi"; - "named-readtables" = quicklisp-to-nix-packages."named-readtables"; "split-sequence" = quicklisp-to-nix-packages."split-sequence"; "trivial-features" = quicklisp-to-nix-packages."trivial-features"; - "trivial-types" = quicklisp-to-nix-packages."trivial-types"; + })); + + + "cxml-stp" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cxml-stp" or (x: {})) + (import ./quicklisp-to-nix-output/cxml-stp.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + "closure-common" = quicklisp-to-nix-packages."closure-common"; + "cxml" = quicklisp-to-nix-packages."cxml"; + "cxml_slash_test" = quicklisp-to-nix-packages."cxml_slash_test"; + "parse-number" = quicklisp-to-nix-packages."parse-number"; + "puri" = quicklisp-to-nix-packages."puri"; + "rt" = quicklisp-to-nix-packages."rt"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; + "xpath" = quicklisp-to-nix-packages."xpath"; + "xpath_slash_test" = quicklisp-to-nix-packages."xpath_slash_test"; + "yacc" = quicklisp-to-nix-packages."yacc"; })); @@ -2277,22 +2827,16 @@ let quicklisp-to-nix-packages = rec { })); - "clx-truetype" = buildLispPackage + "collectors" = buildLispPackage ((f: x: (x // (f x))) - (qlOverrides."clx-truetype" or (x: {})) - (import ./quicklisp-to-nix-output/clx-truetype.nix { + (qlOverrides."collectors" or (x: {})) + (import ./quicklisp-to-nix-output/collectors.nix { inherit fetchurl; "alexandria" = quicklisp-to-nix-packages."alexandria"; - "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; - "cl-aa" = quicklisp-to-nix-packages."cl-aa"; - "cl-fad" = quicklisp-to-nix-packages."cl-fad"; - "cl-paths" = quicklisp-to-nix-packages."cl-paths"; - "cl-paths-ttf" = quicklisp-to-nix-packages."cl-paths-ttf"; - "cl-store" = quicklisp-to-nix-packages."cl-store"; - "cl-vectors" = quicklisp-to-nix-packages."cl-vectors"; - "clx" = quicklisp-to-nix-packages."clx"; - "trivial-features" = quicklisp-to-nix-packages."trivial-features"; - "zpb-ttf" = quicklisp-to-nix-packages."zpb-ttf"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "lisp-unit2" = quicklisp-to-nix-packages."lisp-unit2"; + "symbol-munger" = quicklisp-to-nix-packages."symbol-munger"; })); @@ -2305,6 +2849,186 @@ let quicklisp-to-nix-packages = rec { })); + "cl-who" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-who" or (x: {})) + (import ./quicklisp-to-nix-output/cl-who.nix { + inherit fetchurl; + "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; + })); + + + "cl-webkit2" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-webkit2" or (x: {})) + (import ./quicklisp-to-nix-output/cl-webkit2.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cffi" = quicklisp-to-nix-packages."cffi"; + "cl-cffi-gtk" = quicklisp-to-nix-packages."cl-cffi-gtk"; + "cl-cffi-gtk-cairo" = quicklisp-to-nix-packages."cl-cffi-gtk-cairo"; + "cl-cffi-gtk-gdk" = quicklisp-to-nix-packages."cl-cffi-gtk-gdk"; + "cl-cffi-gtk-gdk-pixbuf" = quicklisp-to-nix-packages."cl-cffi-gtk-gdk-pixbuf"; + "cl-cffi-gtk-gio" = quicklisp-to-nix-packages."cl-cffi-gtk-gio"; + "cl-cffi-gtk-glib" = quicklisp-to-nix-packages."cl-cffi-gtk-glib"; + "cl-cffi-gtk-gobject" = quicklisp-to-nix-packages."cl-cffi-gtk-gobject"; + "cl-cffi-gtk-pango" = quicklisp-to-nix-packages."cl-cffi-gtk-pango"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "trivial-garbage" = quicklisp-to-nix-packages."trivial-garbage"; + })); + + + "cl-vectors" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-vectors" or (x: {})) + (import ./quicklisp-to-nix-output/cl-vectors.nix { + inherit fetchurl; + "cl-aa" = quicklisp-to-nix-packages."cl-aa"; + "cl-paths" = quicklisp-to-nix-packages."cl-paths"; + })); + + + "cl-utilities" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-utilities" or (x: {})) + (import ./quicklisp-to-nix-output/cl-utilities.nix { + inherit fetchurl; + })); + + + "cl-unification" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-unification" or (x: {})) + (import ./quicklisp-to-nix-output/cl-unification.nix { + inherit fetchurl; + })); + + + "cl-unicode" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-unicode" or (x: {})) + (import ./quicklisp-to-nix-output/cl-unicode.nix { + inherit fetchurl; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; + })); + + + "clump" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."clump" or (x: {})) + (import ./quicklisp-to-nix-output/clump.nix { + inherit fetchurl; + "acclimation" = quicklisp-to-nix-packages."acclimation"; + "clump-2-3-tree" = quicklisp-to-nix-packages."clump-2-3-tree"; + "clump-binary-tree" = quicklisp-to-nix-packages."clump-binary-tree"; + })); + + + "cl-typesetting" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-typesetting" or (x: {})) + (import ./quicklisp-to-nix-output/cl-typesetting.nix { + inherit fetchurl; + "cl-pdf" = quicklisp-to-nix-packages."cl-pdf"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "zpb-ttf" = quicklisp-to-nix-packages."zpb-ttf"; + })); + + + "cl-test-more" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-test-more" or (x: {})) + (import ./quicklisp-to-nix-output/cl-test-more.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "anaphora" = quicklisp-to-nix-packages."anaphora"; + "cl-ansi-text" = quicklisp-to-nix-packages."cl-ansi-text"; + "cl-colors" = quicklisp-to-nix-packages."cl-colors"; + "cl-colors2" = quicklisp-to-nix-packages."cl-colors2"; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + "let-plus" = quicklisp-to-nix-packages."let-plus"; + "prove" = quicklisp-to-nix-packages."prove"; + })); + + + "cl-syntax-markup" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-syntax-markup" or (x: {})) + (import ./quicklisp-to-nix-output/cl-syntax-markup.nix { + inherit fetchurl; + "cl-markup" = quicklisp-to-nix-packages."cl-markup"; + "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + "trivial-types" = quicklisp-to-nix-packages."trivial-types"; + })); + + + "cl-syntax-anonfun" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-syntax-anonfun" or (x: {})) + (import ./quicklisp-to-nix-output/cl-syntax-anonfun.nix { + inherit fetchurl; + "cl-anonfun" = quicklisp-to-nix-packages."cl-anonfun"; + "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + "trivial-types" = quicklisp-to-nix-packages."trivial-types"; + })); + + + "cl-syntax-annot" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-syntax-annot" or (x: {})) + (import ./quicklisp-to-nix-output/cl-syntax-annot.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "cl-annot" = quicklisp-to-nix-packages."cl-annot"; + "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + "trivial-types" = quicklisp-to-nix-packages."trivial-types"; + })); + + + "cl-syntax" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-syntax" or (x: {})) + (import ./quicklisp-to-nix-output/cl-syntax.nix { + inherit fetchurl; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + "trivial-types" = quicklisp-to-nix-packages."trivial-types"; + })); + + + "cl-store" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-store" or (x: {})) + (import ./quicklisp-to-nix-output/cl-store.nix { + inherit fetchurl; + "rt" = quicklisp-to-nix-packages."rt"; + })); + + + "cl_plus_ssl" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl_plus_ssl" or (x: {})) + (import ./quicklisp-to-nix-output/cl_plus_ssl.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cffi" = quicklisp-to-nix-packages."cffi"; + "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "trivial-garbage" = quicklisp-to-nix-packages."trivial-garbage"; + "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; + "uiop" = quicklisp-to-nix-packages."uiop"; + })); + + "clss" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."clss" or (x: {})) @@ -2359,218 +3083,6 @@ let quicklisp-to-nix-packages = rec { })); - "closure-html" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."closure-html" or (x: {})) - (import ./quicklisp-to-nix-output/closure-html.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "babel" = quicklisp-to-nix-packages."babel"; - "closure-common" = quicklisp-to-nix-packages."closure-common"; - "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; - "trivial-features" = quicklisp-to-nix-packages."trivial-features"; - "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; - })); - - - "closer-mop" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."closer-mop" or (x: {})) - (import ./quicklisp-to-nix-output/closer-mop.nix { - inherit fetchurl; - })); - - - "clack-v1-compat" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."clack-v1-compat" or (x: {})) - (import ./quicklisp-to-nix-output/clack-v1-compat.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "babel" = quicklisp-to-nix-packages."babel"; - "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; - "cffi" = quicklisp-to-nix-packages."cffi"; - "cffi-grovel" = quicklisp-to-nix-packages."cffi-grovel"; - "cffi-toolchain" = quicklisp-to-nix-packages."cffi-toolchain"; - "chipz" = quicklisp-to-nix-packages."chipz"; - "chunga" = quicklisp-to-nix-packages."chunga"; - "circular-streams" = quicklisp-to-nix-packages."circular-streams"; - "cl_plus_ssl" = quicklisp-to-nix-packages."cl_plus_ssl"; - "cl-annot" = quicklisp-to-nix-packages."cl-annot"; - "cl-base64" = quicklisp-to-nix-packages."cl-base64"; - "cl-cookie" = quicklisp-to-nix-packages."cl-cookie"; - "cl-fad" = quicklisp-to-nix-packages."cl-fad"; - "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; - "cl-reexport" = quicklisp-to-nix-packages."cl-reexport"; - "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; - "cl-syntax-annot" = quicklisp-to-nix-packages."cl-syntax-annot"; - "cl-utilities" = quicklisp-to-nix-packages."cl-utilities"; - "clack" = quicklisp-to-nix-packages."clack"; - "clack-handler-hunchentoot" = quicklisp-to-nix-packages."clack-handler-hunchentoot"; - "clack-socket" = quicklisp-to-nix-packages."clack-socket"; - "clack-test" = quicklisp-to-nix-packages."clack-test"; - "dexador" = quicklisp-to-nix-packages."dexador"; - "dissect" = quicklisp-to-nix-packages."dissect"; - "fast-http" = quicklisp-to-nix-packages."fast-http"; - "fast-io" = quicklisp-to-nix-packages."fast-io"; - "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; - "http-body" = quicklisp-to-nix-packages."http-body"; - "hunchentoot" = quicklisp-to-nix-packages."hunchentoot"; - "ironclad" = quicklisp-to-nix-packages."ironclad"; - "jonathan" = quicklisp-to-nix-packages."jonathan"; - "lack" = quicklisp-to-nix-packages."lack"; - "lack-component" = quicklisp-to-nix-packages."lack-component"; - "lack-middleware-backtrace" = quicklisp-to-nix-packages."lack-middleware-backtrace"; - "lack-util" = quicklisp-to-nix-packages."lack-util"; - "local-time" = quicklisp-to-nix-packages."local-time"; - "marshal" = quicklisp-to-nix-packages."marshal"; - "md5" = quicklisp-to-nix-packages."md5"; - "named-readtables" = quicklisp-to-nix-packages."named-readtables"; - "nibbles" = quicklisp-to-nix-packages."nibbles"; - "proc-parse" = quicklisp-to-nix-packages."proc-parse"; - "quri" = quicklisp-to-nix-packages."quri"; - "rfc2388" = quicklisp-to-nix-packages."rfc2388"; - "rove" = quicklisp-to-nix-packages."rove"; - "smart-buffer" = quicklisp-to-nix-packages."smart-buffer"; - "split-sequence" = quicklisp-to-nix-packages."split-sequence"; - "static-vectors" = quicklisp-to-nix-packages."static-vectors"; - "trivial-backtrace" = quicklisp-to-nix-packages."trivial-backtrace"; - "trivial-features" = quicklisp-to-nix-packages."trivial-features"; - "trivial-garbage" = quicklisp-to-nix-packages."trivial-garbage"; - "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; - "trivial-mimes" = quicklisp-to-nix-packages."trivial-mimes"; - "trivial-types" = quicklisp-to-nix-packages."trivial-types"; - "uiop" = quicklisp-to-nix-packages."uiop"; - "usocket" = quicklisp-to-nix-packages."usocket"; - "xsubseq" = quicklisp-to-nix-packages."xsubseq"; - })); - - - "clack" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."clack" or (x: {})) - (import ./quicklisp-to-nix-output/clack.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; - "ironclad" = quicklisp-to-nix-packages."ironclad"; - "lack" = quicklisp-to-nix-packages."lack"; - "lack-component" = quicklisp-to-nix-packages."lack-component"; - "lack-middleware-backtrace" = quicklisp-to-nix-packages."lack-middleware-backtrace"; - "lack-util" = quicklisp-to-nix-packages."lack-util"; - "nibbles" = quicklisp-to-nix-packages."nibbles"; - "uiop" = quicklisp-to-nix-packages."uiop"; - })); - - - "cl-who" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-who" or (x: {})) - (import ./quicklisp-to-nix-output/cl-who.nix { - inherit fetchurl; - "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; - })); - - - "cl-vectors" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-vectors" or (x: {})) - (import ./quicklisp-to-nix-output/cl-vectors.nix { - inherit fetchurl; - "cl-aa" = quicklisp-to-nix-packages."cl-aa"; - "cl-paths" = quicklisp-to-nix-packages."cl-paths"; - })); - - - "cl-utilities" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-utilities" or (x: {})) - (import ./quicklisp-to-nix-output/cl-utilities.nix { - inherit fetchurl; - })); - - - "cl-unification" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-unification" or (x: {})) - (import ./quicklisp-to-nix-output/cl-unification.nix { - inherit fetchurl; - })); - - - "cl-unicode" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-unicode" or (x: {})) - (import ./quicklisp-to-nix-output/cl-unicode.nix { - inherit fetchurl; - "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; - "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; - })); - - - "cl-typesetting" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-typesetting" or (x: {})) - (import ./quicklisp-to-nix-output/cl-typesetting.nix { - inherit fetchurl; - "cl-pdf" = quicklisp-to-nix-packages."cl-pdf"; - "iterate" = quicklisp-to-nix-packages."iterate"; - "zpb-ttf" = quicklisp-to-nix-packages."zpb-ttf"; - })); - - - "cl-test-more" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-test-more" or (x: {})) - (import ./quicklisp-to-nix-output/cl-test-more.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "anaphora" = quicklisp-to-nix-packages."anaphora"; - "cl-ansi-text" = quicklisp-to-nix-packages."cl-ansi-text"; - "cl-colors" = quicklisp-to-nix-packages."cl-colors"; - "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; - "let-plus" = quicklisp-to-nix-packages."let-plus"; - "prove" = quicklisp-to-nix-packages."prove"; - })); - - - "cl-syntax-markup" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-syntax-markup" or (x: {})) - (import ./quicklisp-to-nix-output/cl-syntax-markup.nix { - inherit fetchurl; - "cl-markup" = quicklisp-to-nix-packages."cl-markup"; - "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; - "named-readtables" = quicklisp-to-nix-packages."named-readtables"; - "trivial-types" = quicklisp-to-nix-packages."trivial-types"; - })); - - - "cl-syntax-anonfun" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-syntax-anonfun" or (x: {})) - (import ./quicklisp-to-nix-output/cl-syntax-anonfun.nix { - inherit fetchurl; - "cl-anonfun" = quicklisp-to-nix-packages."cl-anonfun"; - "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; - "named-readtables" = quicklisp-to-nix-packages."named-readtables"; - "trivial-types" = quicklisp-to-nix-packages."trivial-types"; - })); - - - "cl-syntax-annot" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-syntax-annot" or (x: {})) - (import ./quicklisp-to-nix-output/cl-syntax-annot.nix { - inherit fetchurl; - "alexandria" = quicklisp-to-nix-packages."alexandria"; - "cl-annot" = quicklisp-to-nix-packages."cl-annot"; - "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; - "named-readtables" = quicklisp-to-nix-packages."named-readtables"; - "trivial-types" = quicklisp-to-nix-packages."trivial-types"; - })); - - "cl-smtp" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-smtp" or (x: {})) @@ -2591,6 +3103,18 @@ let quicklisp-to-nix-packages = rec { })); + "cl-slice" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-slice" or (x: {})) + (import ./quicklisp-to-nix-output/cl-slice.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "anaphora" = quicklisp-to-nix-packages."anaphora"; + "clunit" = quicklisp-to-nix-packages."clunit"; + "let-plus" = quicklisp-to-nix-packages."let-plus"; + })); + + "cl-reexport" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-reexport" or (x: {})) @@ -2600,6 +3124,16 @@ let quicklisp-to-nix-packages = rec { })); + "cl-qprint" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-qprint" or (x: {})) + (import ./quicklisp-to-nix-output/cl-qprint.nix { + inherit fetchurl; + "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; + "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; + })); + + "cl-protobufs" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-protobufs" or (x: {})) @@ -2613,6 +3147,21 @@ let quicklisp-to-nix-packages = rec { })); + "cl-prevalence" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-prevalence" or (x: {})) + (import ./quicklisp-to-nix-output/cl-prevalence.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "s-sysdeps" = quicklisp-to-nix-packages."s-sysdeps"; + "s-xml" = quicklisp-to-nix-packages."s-xml"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "usocket" = quicklisp-to-nix-packages."usocket"; + "usocket-server" = quicklisp-to-nix-packages."usocket-server"; + })); + + "cl-ppcre-unicode" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-ppcre-unicode" or (x: {})) @@ -2655,6 +3204,50 @@ let quicklisp-to-nix-packages = rec { })); + "cl-paths-ttf" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-paths-ttf" or (x: {})) + (import ./quicklisp-to-nix-output/cl-paths-ttf.nix { + inherit fetchurl; + "cl-paths" = quicklisp-to-nix-packages."cl-paths"; + "zpb-ttf" = quicklisp-to-nix-packages."zpb-ttf"; + })); + + + "closure-html" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."closure-html" or (x: {})) + (import ./quicklisp-to-nix-output/closure-html.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "closure-common" = quicklisp-to-nix-packages."closure-common"; + "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; + })); + + + "closure-common" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."closure-common" or (x: {})) + (import ./quicklisp-to-nix-output/closure-common.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; + })); + + + "closer-mop" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."closer-mop" or (x: {})) + (import ./quicklisp-to-nix-output/closer-mop.nix { + inherit fetchurl; + })); + + "cl-mysql" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-mysql" or (x: {})) @@ -2667,6 +3260,26 @@ let quicklisp-to-nix-packages = rec { })); + "cl-locale" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-locale" or (x: {})) + (import ./quicklisp-to-nix-output/cl-locale.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "anaphora" = quicklisp-to-nix-packages."anaphora"; + "arnesi" = quicklisp-to-nix-packages."arnesi"; + "cl-annot" = quicklisp-to-nix-packages."cl-annot"; + "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; + "cl-syntax-annot" = quicklisp-to-nix-packages."cl-syntax-annot"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "collectors" = quicklisp-to-nix-packages."collectors"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + "symbol-munger" = quicklisp-to-nix-packages."symbol-munger"; + "trivial-types" = quicklisp-to-nix-packages."trivial-types"; + })); + + "cl-libuv" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-libuv" or (x: {})) @@ -2724,6 +3337,26 @@ let quicklisp-to-nix-packages = rec { })); + "cl-interpol" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-interpol" or (x: {})) + (import ./quicklisp-to-nix-output/cl-interpol.nix { + inherit fetchurl; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + "cl-unicode" = quicklisp-to-nix-packages."cl-unicode"; + "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + })); + + + "cl-html-parse" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-html-parse" or (x: {})) + (import ./quicklisp-to-nix-output/cl-html-parse.nix { + inherit fetchurl; + })); + + "cl-html5-parser" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-html5-parser" or (x: {})) @@ -2736,14 +3369,6 @@ let quicklisp-to-nix-packages = rec { })); - "cl-html-parse" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-html-parse" or (x: {})) - (import ./quicklisp-to-nix-output/cl-html-parse.nix { - inherit fetchurl; - })); - - "cl-hooks" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-hooks" or (x: {})) @@ -2799,6 +3424,18 @@ let quicklisp-to-nix-packages = rec { })); + "cl-fad" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-fad" or (x: {})) + (import ./quicklisp-to-nix-output/cl-fad.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + "unit-test" = quicklisp-to-nix-packages."unit-test"; + })); + + "cl-emb" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-emb" or (x: {})) @@ -2808,6 +3445,15 @@ let quicklisp-to-nix-packages = rec { })); + "cl-dot" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-dot" or (x: {})) + (import ./quicklisp-to-nix-output/cl-dot.nix { + inherit fetchurl; + "uiop" = quicklisp-to-nix-packages."uiop"; + })); + + "cl-dbi" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-dbi" or (x: {})) @@ -2815,14 +3461,9 @@ let quicklisp-to-nix-packages = rec { inherit fetchurl; "alexandria" = quicklisp-to-nix-packages."alexandria"; "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; - "cl-annot" = quicklisp-to-nix-packages."cl-annot"; - "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; - "cl-syntax-annot" = quicklisp-to-nix-packages."cl-syntax-annot"; "closer-mop" = quicklisp-to-nix-packages."closer-mop"; "dbi" = quicklisp-to-nix-packages."dbi"; - "named-readtables" = quicklisp-to-nix-packages."named-readtables"; "split-sequence" = quicklisp-to-nix-packages."split-sequence"; - "trivial-types" = quicklisp-to-nix-packages."trivial-types"; })); @@ -2857,8 +3498,6 @@ let quicklisp-to-nix-packages = rec { inherit fetchurl; "alexandria" = quicklisp-to-nix-packages."alexandria"; "babel" = quicklisp-to-nix-packages."babel"; - "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; - "cl-fad" = quicklisp-to-nix-packages."cl-fad"; "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; "cl-utilities" = quicklisp-to-nix-packages."cl-utilities"; "local-time" = quicklisp-to-nix-packages."local-time"; @@ -2869,6 +3508,17 @@ let quicklisp-to-nix-packages = rec { })); + "cl-containers" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-containers" or (x: {})) + (import ./quicklisp-to-nix-output/cl-containers.nix { + inherit fetchurl; + "asdf-system-connections" = quicklisp-to-nix-packages."asdf-system-connections"; + "metatilities-base" = quicklisp-to-nix-packages."metatilities-base"; + "moptilities" = quicklisp-to-nix-packages."moptilities"; + })); + + "cl-colors" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-colors" or (x: {})) @@ -2890,6 +3540,29 @@ let quicklisp-to-nix-packages = rec { })); + "cl-cffi-gtk" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."cl-cffi-gtk" or (x: {})) + (import ./quicklisp-to-nix-output/cl-cffi-gtk.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "babel" = quicklisp-to-nix-packages."babel"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "cffi" = quicklisp-to-nix-packages."cffi"; + "cl-cffi-gtk-cairo" = quicklisp-to-nix-packages."cl-cffi-gtk-cairo"; + "cl-cffi-gtk-gdk" = quicklisp-to-nix-packages."cl-cffi-gtk-gdk"; + "cl-cffi-gtk-gdk-pixbuf" = quicklisp-to-nix-packages."cl-cffi-gtk-gdk-pixbuf"; + "cl-cffi-gtk-gio" = quicklisp-to-nix-packages."cl-cffi-gtk-gio"; + "cl-cffi-gtk-glib" = quicklisp-to-nix-packages."cl-cffi-gtk-glib"; + "cl-cffi-gtk-gobject" = quicklisp-to-nix-packages."cl-cffi-gtk-gobject"; + "cl-cffi-gtk-pango" = quicklisp-to-nix-packages."cl-cffi-gtk-pango"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "trivial-features" = quicklisp-to-nix-packages."trivial-features"; + "trivial-garbage" = quicklisp-to-nix-packages."trivial-garbage"; + })); + + "cl-base64" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cl-base64" or (x: {})) @@ -2979,25 +3652,96 @@ let quicklisp-to-nix-packages = rec { (import ./quicklisp-to-nix-output/cl-ansi-text.nix { inherit fetchurl; "alexandria" = quicklisp-to-nix-packages."alexandria"; - "anaphora" = quicklisp-to-nix-packages."anaphora"; - "cl-colors" = quicklisp-to-nix-packages."cl-colors"; - "let-plus" = quicklisp-to-nix-packages."let-plus"; + "cl-colors2" = quicklisp-to-nix-packages."cl-colors2"; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; })); - "cl_plus_ssl" = buildLispPackage + "cl-annot" = buildLispPackage ((f: x: (x // (f x))) - (qlOverrides."cl_plus_ssl" or (x: {})) - (import ./quicklisp-to-nix-output/cl_plus_ssl.nix { + (qlOverrides."cl-annot" or (x: {})) + (import ./quicklisp-to-nix-output/cl-annot.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + })); + + + "clack-v1-compat" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."clack-v1-compat" or (x: {})) + (import ./quicklisp-to-nix-output/clack-v1-compat.nix { inherit fetchurl; "alexandria" = quicklisp-to-nix-packages."alexandria"; "babel" = quicklisp-to-nix-packages."babel"; "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; "cffi" = quicklisp-to-nix-packages."cffi"; + "cffi-grovel" = quicklisp-to-nix-packages."cffi-grovel"; + "cffi-toolchain" = quicklisp-to-nix-packages."cffi-toolchain"; + "chipz" = quicklisp-to-nix-packages."chipz"; + "chunga" = quicklisp-to-nix-packages."chunga"; + "circular-streams" = quicklisp-to-nix-packages."circular-streams"; + "cl_plus_ssl" = quicklisp-to-nix-packages."cl_plus_ssl"; + "cl-annot" = quicklisp-to-nix-packages."cl-annot"; + "cl-base64" = quicklisp-to-nix-packages."cl-base64"; + "cl-cookie" = quicklisp-to-nix-packages."cl-cookie"; + "cl-fad" = quicklisp-to-nix-packages."cl-fad"; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + "cl-reexport" = quicklisp-to-nix-packages."cl-reexport"; + "cl-syntax" = quicklisp-to-nix-packages."cl-syntax"; + "cl-syntax-annot" = quicklisp-to-nix-packages."cl-syntax-annot"; + "cl-utilities" = quicklisp-to-nix-packages."cl-utilities"; + "clack" = quicklisp-to-nix-packages."clack"; + "clack-handler-hunchentoot" = quicklisp-to-nix-packages."clack-handler-hunchentoot"; + "clack-socket" = quicklisp-to-nix-packages."clack-socket"; + "clack-test" = quicklisp-to-nix-packages."clack-test"; + "dexador" = quicklisp-to-nix-packages."dexador"; + "dissect" = quicklisp-to-nix-packages."dissect"; + "fast-http" = quicklisp-to-nix-packages."fast-http"; + "fast-io" = quicklisp-to-nix-packages."fast-io"; "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; + "http-body" = quicklisp-to-nix-packages."http-body"; + "hunchentoot" = quicklisp-to-nix-packages."hunchentoot"; + "ironclad" = quicklisp-to-nix-packages."ironclad"; + "jonathan" = quicklisp-to-nix-packages."jonathan"; + "lack" = quicklisp-to-nix-packages."lack"; + "lack-component" = quicklisp-to-nix-packages."lack-component"; + "lack-middleware-backtrace" = quicklisp-to-nix-packages."lack-middleware-backtrace"; + "lack-util" = quicklisp-to-nix-packages."lack-util"; + "local-time" = quicklisp-to-nix-packages."local-time"; + "marshal" = quicklisp-to-nix-packages."marshal"; + "md5" = quicklisp-to-nix-packages."md5"; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + "proc-parse" = quicklisp-to-nix-packages."proc-parse"; + "quri" = quicklisp-to-nix-packages."quri"; + "rfc2388" = quicklisp-to-nix-packages."rfc2388"; + "rove" = quicklisp-to-nix-packages."rove"; + "smart-buffer" = quicklisp-to-nix-packages."smart-buffer"; + "split-sequence" = quicklisp-to-nix-packages."split-sequence"; + "static-vectors" = quicklisp-to-nix-packages."static-vectors"; + "trivial-backtrace" = quicklisp-to-nix-packages."trivial-backtrace"; "trivial-features" = quicklisp-to-nix-packages."trivial-features"; "trivial-garbage" = quicklisp-to-nix-packages."trivial-garbage"; "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; + "trivial-mimes" = quicklisp-to-nix-packages."trivial-mimes"; + "trivial-types" = quicklisp-to-nix-packages."trivial-types"; + "uiop" = quicklisp-to-nix-packages."uiop"; + "usocket" = quicklisp-to-nix-packages."usocket"; + "xsubseq" = quicklisp-to-nix-packages."xsubseq"; + })); + + + "clack" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."clack" or (x: {})) + (import ./quicklisp-to-nix-output/clack.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "ironclad" = quicklisp-to-nix-packages."ironclad"; + "lack" = quicklisp-to-nix-packages."lack"; + "lack-component" = quicklisp-to-nix-packages."lack-component"; + "lack-middleware-backtrace" = quicklisp-to-nix-packages."lack-middleware-backtrace"; + "lack-util" = quicklisp-to-nix-packages."lack-util"; "uiop" = quicklisp-to-nix-packages."uiop"; })); @@ -3019,6 +3763,15 @@ let quicklisp-to-nix-packages = rec { })); + "chunga" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."chunga" or (x: {})) + (import ./quicklisp-to-nix-output/chunga.nix { + inherit fetchurl; + "trivial-gray-streams" = quicklisp-to-nix-packages."trivial-gray-streams"; + })); + + "chipz" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."chipz" or (x: {})) @@ -3027,6 +3780,17 @@ let quicklisp-to-nix-packages = rec { })); + "chanl" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."chanl" or (x: {})) + (import ./quicklisp-to-nix-output/chanl.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "bordeaux-threads" = quicklisp-to-nix-packages."bordeaux-threads"; + "fiveam" = quicklisp-to-nix-packages."fiveam"; + })); + + "cffi-grovel" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."cffi-grovel" or (x: {})) @@ -3074,6 +3838,7 @@ let quicklisp-to-nix-packages = rec { "cl-ansi-text" = quicklisp-to-nix-packages."cl-ansi-text"; "cl-base64" = quicklisp-to-nix-packages."cl-base64"; "cl-colors" = quicklisp-to-nix-packages."cl-colors"; + "cl-colors2" = quicklisp-to-nix-packages."cl-colors2"; "cl-cookie" = quicklisp-to-nix-packages."cl-cookie"; "cl-emb" = quicklisp-to-nix-packages."cl-emb"; "cl-fad" = quicklisp-to-nix-packages."cl-fad"; @@ -3109,7 +3874,6 @@ let quicklisp-to-nix-packages = rec { "md5" = quicklisp-to-nix-packages."md5"; "myway" = quicklisp-to-nix-packages."myway"; "named-readtables" = quicklisp-to-nix-packages."named-readtables"; - "nibbles" = quicklisp-to-nix-packages."nibbles"; "proc-parse" = quicklisp-to-nix-packages."proc-parse"; "prove" = quicklisp-to-nix-packages."prove"; "quri" = quicklisp-to-nix-packages."quri"; @@ -3174,6 +3938,30 @@ let quicklisp-to-nix-packages = rec { })); + "arnesi" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."arnesi" or (x: {})) + (import ./quicklisp-to-nix-output/arnesi.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "collectors" = quicklisp-to-nix-packages."collectors"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "swank" = quicklisp-to-nix-packages."swank"; + "symbol-munger" = quicklisp-to-nix-packages."symbol-munger"; + })); + + + "anaphora" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."anaphora" or (x: {})) + (import ./quicklisp-to-nix-output/anaphora.nix { + inherit fetchurl; + "rt" = quicklisp-to-nix-packages."rt"; + })); + + "alexandria" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."alexandria" or (x: {})) @@ -3182,6 +3970,32 @@ let quicklisp-to-nix-packages = rec { })); + "acclimation" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."acclimation" or (x: {})) + (import ./quicklisp-to-nix-output/acclimation.nix { + inherit fetchurl; + })); + + + "access" = buildLispPackage + ((f: x: (x // (f x))) + (qlOverrides."access" or (x: {})) + (import ./quicklisp-to-nix-output/access.nix { + inherit fetchurl; + "alexandria" = quicklisp-to-nix-packages."alexandria"; + "anaphora" = quicklisp-to-nix-packages."anaphora"; + "cl-interpol" = quicklisp-to-nix-packages."cl-interpol"; + "cl-ppcre" = quicklisp-to-nix-packages."cl-ppcre"; + "cl-unicode" = quicklisp-to-nix-packages."cl-unicode"; + "closer-mop" = quicklisp-to-nix-packages."closer-mop"; + "flexi-streams" = quicklisp-to-nix-packages."flexi-streams"; + "iterate" = quicklisp-to-nix-packages."iterate"; + "lisp-unit2" = quicklisp-to-nix-packages."lisp-unit2"; + "named-readtables" = quicklisp-to-nix-packages."named-readtables"; + })); + + "_3bmd" = buildLispPackage ((f: x: (x // (f x))) (qlOverrides."_3bmd" or (x: {})) @@ -3193,16 +4007,6 @@ let quicklisp-to-nix-packages = rec { })); - "cl-prevalence" = buildLispPackage - ((f: x: (x // (f x))) - (qlOverrides."cl-prevalence" or (x: {})) - (import ./quicklisp-to-nix-output/cl-prevalence.nix { - inherit fetchurl; - "s-sysdeps" = quicklisp-to-nix-packages."s-sysdeps"; - "s-xml" = quicklisp-to-nix-packages."s-xml"; - })); - - }; in quicklisp-to-nix-packages diff --git a/pkgs/development/lisp-modules/quicklisp-to-nix/system-info.lisp b/pkgs/development/lisp-modules/quicklisp-to-nix/system-info.lisp index 0f7941a0115..fecae710247 100644 --- a/pkgs/development/lisp-modules/quicklisp-to-nix/system-info.lisp +++ b/pkgs/development/lisp-modules/quicklisp-to-nix/system-info.lisp @@ -7,11 +7,20 @@ (:export #:dump-image)) (in-package :ql-to-nix-system-info) +(eval-when (:compile-toplevel :load-toplevel :execute) + (defparameter *implementation-systems* + (append + #+sbcl(list :sb-posix :sb-bsd-sockets :sb-rotate-byte :sb-cltl2 + :sb-introspect :sb-rt :sb-concurrency))) + (mapcar (function require) *implementation-systems*)) + (declaim (optimize (debug 3) (speed 0) (space 0) (compilation-speed 0) (safety 3))) ;; This file cannot have any dependencies beyond quicklisp and asdf. ;; Otherwise, we'll miss some dependencies! +;; (Implementation-provided dependencies are special, though) + ;; We can't load quicklisp until runtime (at which point we'll create ;; an isolated quicklisp installation). These wrapper functions are ;; nicer than funcalling intern'd symbols every time we want to talk @@ -441,6 +450,8 @@ Run with --debug and/or --verbose for more info. (when cache-dir (setf cache-dir (pathname-as-directory (parse-namestring cache-dir)))) + (mapcar (function require) *implementation-systems*) + (with-quicklisp (dir) (:cache-dir (or cache-dir :temp)) (declare (ignore dir)) diff --git a/pkgs/development/lisp-modules/quicklisp.sh b/pkgs/development/lisp-modules/quicklisp.sh index 30d14419461..1d9c3c5bc53 100644 --- a/pkgs/development/lisp-modules/quicklisp.sh +++ b/pkgs/development/lisp-modules/quicklisp.sh @@ -63,7 +63,7 @@ case "$op" in mv "$NIX_QUICKLISP_DIR/quicklisp"{,-old-$(date +%Y%m%d-%H%M%S)} fi - ln -sfT "@out@/lib/common-lisp/quicklisp/quicklisp" "$NIX_QUICKLISP_DIR/quicklisp" + cp -rfT "@out@/lib/common-lisp/quicklisp/quicklisp" "$NIX_QUICKLISP_DIR/quicklisp" "@clwrapper@/bin/common-lisp.sh" "$NIX_LISP_EXEC_CODE" \ "(load \"$NIX_QUICKLISP_DIR/setup.lisp\")" "$NIX_LISP_EXEC_CODE" \ diff --git a/pkgs/development/lisp-modules/shell.nix b/pkgs/development/lisp-modules/shell.nix index 4a1f9ded56c..0201491f4cc 100644 --- a/pkgs/development/lisp-modules/shell.nix +++ b/pkgs/development/lisp-modules/shell.nix @@ -11,6 +11,6 @@ self = rec { lispPackages.quicklisp-to-nix lispPackages.quicklisp-to-nix-system-info ]; CPATH = "${libfixposix}/include"; - LD_LIBRARY_PATH = "${openssl.out}/lib:${fuse}/lib:${libuv}/lib:${libev}/lib:${libmysqlclient}/lib:${libmysqlclient}/lib/mysql:${postgresql.lib}/lib:${sqlite.out}/lib:${libfixposix}/lib:${freetds}/lib:${openssl_lib_marked}/lib"; + LD_LIBRARY_PATH = "${openssl.out}/lib:${fuse}/lib:${libuv}/lib:${libev}/lib:${libmysqlclient}/lib:${libmysqlclient}/lib/mysql:${postgresql.lib}/lib:${sqlite.out}/lib:${libfixposix}/lib:${freetds}/lib:${openssl_lib_marked}/lib:${glib.out}/lib:${gdk_pixbuf}/lib:${cairo}/lib:${pango.out}/lib:${gtk3}/lib:${webkitgtk}/lib"; }; in stdenv.mkDerivation self diff --git a/pkgs/development/lua-modules/overrides.nix b/pkgs/development/lua-modules/overrides.nix index 6416d59a71e..8e77c190247 100644 --- a/pkgs/development/lua-modules/overrides.nix +++ b/pkgs/development/lua-modules/overrides.nix @@ -169,7 +169,7 @@ with super; luadbi-mysql = super.luadbi-mysql.override({ extraVariables = { # Can't just be /include and /lib, unfortunately needs the trailing 'mysql' - MYSQL_INCDIR="${pkgs.libmysqlclient}/include/mysql"; + MYSQL_INCDIR="${pkgs.libmysqlclient.dev}/include/mysql"; MYSQL_LIBDIR="${pkgs.libmysqlclient}/lib/mysql"; }; buildInputs = [ diff --git a/pkgs/development/misc/h3/default.nix b/pkgs/development/misc/h3/default.nix index 32f65c0925c..8b8515261a1 100644 --- a/pkgs/development/misc/h3/default.nix +++ b/pkgs/development/misc/h3/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "h3"; - version = "3.6.4"; + version = "3.7.1"; src = fetchFromGitHub { owner = "uber"; repo = "h3"; rev = "v${version}"; - sha256 = "1a4scs5n9srq6sjkz8d60ffzpc6aadkxmk1i3hdj081j0jzsrpf7"; + sha256 = "1ccyzbvbacf0bl9av4yp15zmhiqr3679nnbab11yrhxm9csyal16"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/misc/haskell/hasura/graphql-engine/default.nix b/pkgs/development/misc/haskell/hasura/graphql-engine/default.nix index 0bd68afae4b..055459514e4 100644 --- a/pkgs/development/misc/haskell/hasura/graphql-engine/default.nix +++ b/pkgs/development/misc/haskell/hasura/graphql-engine/default.nix @@ -70,4 +70,6 @@ mkDerivation { description = "GraphQL API over Postgres"; license = stdenv.lib.licenses.asl20; maintainers = with stdenv.lib.maintainers; [ offline ]; + hydraPlatforms = []; + broken = true; } diff --git a/pkgs/development/mobile/cocoapods/default.nix b/pkgs/development/mobile/cocoapods/default.nix index f0d1a3b89d0..8559ff5c74c 100644 --- a/pkgs/development/mobile/cocoapods/default.nix +++ b/pkgs/development/mobile/cocoapods/default.nix @@ -13,7 +13,7 @@ bundlerApp { passthru.updateScript = toString ./update; meta = with lib; { - description = "CocoaPods manages dependencies for your Xcode projects."; + description = "Manages dependencies for your Xcode projects"; homepage = "https://github.com/CocoaPods/CocoaPods"; license = licenses.mit; platforms = platforms.darwin; diff --git a/pkgs/development/node-packages/default.nix b/pkgs/development/node-packages/default.nix index 4ef3de0bb4e..d7482e7c6b8 100644 --- a/pkgs/development/node-packages/default.nix +++ b/pkgs/development/node-packages/default.nix @@ -73,6 +73,18 @@ let nativeBuildInputs = drv.nativeBuildInputs or [] ++ [ pkgs.psc-package self.pulp ]; }); + makam = super.makam.override { + buildInputs = [ pkgs.nodejs pkgs.makeWrapper ]; + postFixup = '' + wrapProgram "$out/bin/makam" --prefix PATH : ${stdenv.lib.makeBinPath [ pkgs.nodejs ]} + ${ + if stdenv.isLinux + then "patchelf --set-interpreter ${stdenv.glibc}/lib/ld-linux-x86-64.so.2 \"$out/lib/node_modules/makam/makam-bin-linux64\"" + else "" + } + ''; + }; + mirakurun = super.mirakurun.override rec { nativeBuildInputs = with pkgs; [ makeWrapper ]; postInstall = let diff --git a/pkgs/development/node-packages/node-packages.json b/pkgs/development/node-packages/node-packages.json index 77b398caeec..ff07222506d 100644 --- a/pkgs/development/node-packages/node-packages.json +++ b/pkgs/development/node-packages/node-packages.json @@ -18,7 +18,9 @@ , "browserify" , "castnow" , "clean-css-cli" +, "clubhouse-cli" , "coc-css" +, "coc-diagnostic" , "coc-emmet" , "coc-eslint" , "coc-git" @@ -75,6 +77,7 @@ , {"fast-cli": "1.x"} , "fkill-cli" , "forever" +, "fx" , "get-graphql-schema" , "git-run" , "git-ssb" @@ -82,6 +85,7 @@ , "gitmoji-cli" , "graphql-cli" , "grunt-cli" +, "makam" , "gtop" , "gulp" , "gulp-cli" @@ -90,6 +94,7 @@ , "htmlhint" , "http-server" , "hueadm" +, "inliner" , "imapnotify" , "indium" , "insect" @@ -156,11 +161,13 @@ , "pyright" , "react-native-cli" , "react-tools" +, "readability-cli" , "redoc-cli" , "reveal.js" , "rollup" , { "rust-analyzer-build-deps": "../../misc/vscode-extensions/rust-analyzer/build-deps" } , "s3http" +, "sass" , "semver" , "serve" , "serverless" @@ -201,6 +208,7 @@ , "typescript" , "typescript-language-server" , "uglify-js" +, "undollar" , "ungit" , "vega-cli" , "vega-lite" diff --git a/pkgs/development/node-packages/node-packages.nix b/pkgs/development/node-packages/node-packages.nix index fb747f7e8af..4c4359a1783 100644 --- a/pkgs/development/node-packages/node-packages.nix +++ b/pkgs/development/node-packages/node-packages.nix @@ -22,13 +22,13 @@ let sha512 = "t4WmWoGV9gyzypwG3y3JlcK2t8fKLtvzBA7xEoFTj9SMPvOuLsf13uh4ikK0RRaaa9RPPWLgFUdOyIRaQvCpwQ=="; }; }; - "@angular-devkit/architect-0.1001.4" = { + "@angular-devkit/architect-0.1001.7" = { name = "_at_angular-devkit_slash_architect"; packageName = "@angular-devkit/architect"; - version = "0.1001.4"; + version = "0.1001.7"; src = fetchurl { - url = "https://registry.npmjs.org/@angular-devkit/architect/-/architect-0.1001.4.tgz"; - sha512 = "0U/w+61vWxnEe9Ln/hNOH6O27FVcU+s/sbJAuPREbP875R4bQzK2PX0eYRlISzkDtQyw16GzlsikLWOoJ3vjTA=="; + url = "https://registry.npmjs.org/@angular-devkit/architect/-/architect-0.1001.7.tgz"; + sha512 = "uFYIvMdewU44GbIyRfsUHNMLkx+C0kokpnj7eH5NbJfbyFpCfd3ijBHh+voPdPsDRWs9lLgjbxfHpswSPj4D8w=="; }; }; "@angular-devkit/core-10.0.7" = { @@ -40,13 +40,13 @@ let sha512 = "pXaZgsQ8LHpRx4QGAUYDE8GwBQLAtoqPh6oUCwRJwBExm5rl13OGPTBWewHiq0ysV/SnFXvOjxwAaHQvC1AgZw=="; }; }; - "@angular-devkit/core-10.1.4" = { + "@angular-devkit/core-10.1.7" = { name = "_at_angular-devkit_slash_core"; packageName = "@angular-devkit/core"; - version = "10.1.4"; + version = "10.1.7"; src = fetchurl { - url = "https://registry.npmjs.org/@angular-devkit/core/-/core-10.1.4.tgz"; - sha512 = "B1cwVcfChBvmEacydE2uqZ1UC2ez1G+KY0GyVnCQKpAb/DdfDgtaYjTx9JLvGQjE/BlVklEj8YCKDjVV0WPE5g=="; + url = "https://registry.npmjs.org/@angular-devkit/core/-/core-10.1.7.tgz"; + sha512 = "RRyDkN2FByA+nlnRx/MzUMK1FXwj7+SsrzJcvZfWx4yA5rfKmJiJryXQEzL44GL1aoaXSuvOYu3H72wxZADN8Q=="; }; }; "@angular-devkit/core-9.1.12" = { @@ -67,13 +67,13 @@ let sha512 = 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- version = "0.18.0"; + version = "0.18.1"; src = fetchurl { - url = "https://registry.npmjs.org/@netlify/open-api/-/open-api-0.18.0.tgz"; - sha512 = "2pgw9SngxtxNcg0g4OJzhHRWmXE/sGpjBn0KfeyKH6kyrY4a3XcKwIZLKuxVLuHxgkpdoBbsFlJBTlsj61g8Dw=="; + url = "https://registry.npmjs.org/@netlify/open-api/-/open-api-0.18.1.tgz"; + sha512 = "kkRCzA71HugJxmPOcWv2B4ArHhSMKjs2ArGBr10ndocVLdAHwCYoJm0X4Xt8IYaOcGD9Lm4fbLjpXDLDRGDzPw=="; }; }; "@netlify/plugin-edge-handlers-1.8.0" = { @@ -3397,13 +3442,13 @@ let sha512 = "eOU3P8GgRSMKXZWBxMeLZYX3UUwq/w5Hn6BiUyroJ57UkxHFzMsIcsIryt/KW5vKEiLo/pvYZyU0S4WVcbHbWA=="; }; }; - "@netlify/run-utils-1.0.1" = { + "@netlify/run-utils-1.0.3" = { name = "_at_netlify_slash_run-utils"; packageName = "@netlify/run-utils"; - version = "1.0.1"; + version = "1.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/@netlify/run-utils/-/run-utils-1.0.1.tgz"; - sha512 = "fx0A9xVgFQXjZ/uZCa4XtlaO7mPgwhanVHwQAcBDGOwps8fhuaVITCcPy/kPv+igOimvqWzOD3x/F0OrsXGpBw=="; + url = "https://registry.npmjs.org/@netlify/run-utils/-/run-utils-1.0.3.tgz"; + sha512 = "o3U+F2vBuTjl84d5EgV0duImNVtPdMjh2MWs9YgI3Gy4rJLVQbQgPezlFV1PvDrgTMBG14iTTZKjaxFXpsA/sg=="; }; }; "@netlify/zip-it-and-ship-it-1.3.12" = { @@ -3415,58 +3460,58 @@ let sha512 = "FQM/59HXMAKp9k4z6rXDA/FBKFSUaU3n5SFpF2/jScmpCmHBpF+pYIWZmVB4fY17cvq3KIcuSfzf9PqD1B73XQ=="; }; }; - "@node-red/editor-api-1.1.3" = { + "@node-red/editor-api-1.2.1" = { name = "_at_node-red_slash_editor-api"; packageName = "@node-red/editor-api"; - version = "1.1.3"; + version = "1.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/@node-red/editor-api/-/editor-api-1.1.3.tgz"; - sha512 = "NejrCeQSPwvIaxxEiwOnU25Ylnu4ZEtumIIy2mWLd0IojE6HXDBGhAqfxtksIyg6TnrqKsID/JxK0mLgTs/npQ=="; + url = "https://registry.npmjs.org/@node-red/editor-api/-/editor-api-1.2.1.tgz"; + sha512 = "Jhf56SKXafBKdnf0HIegmTC3bu23OD1NvIVfWln38DBLMnAptjGGgqEDnB/sv13MJ8CrcNgvoH3XZtQ5FvBqcw=="; }; }; - "@node-red/editor-client-1.1.3" = { + "@node-red/editor-client-1.2.1" = { name = "_at_node-red_slash_editor-client"; packageName = "@node-red/editor-client"; - version = "1.1.3"; + version = "1.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/@node-red/editor-client/-/editor-client-1.1.3.tgz"; - sha512 = "oMVij+p/+RyRVOBSfvv2nt4pmurOOGH+KQglWVN3jiWs2D4mUXgsBfg/mbHn4wtvEBYtKFOQacXL7N22WES02g=="; + url = "https://registry.npmjs.org/@node-red/editor-client/-/editor-client-1.2.1.tgz"; + sha512 = "KO67cvvORLJY1eI2LqcjcZ92jKYmXmkFDcuYnItdQYu1h3g8RcIQwqqU9ZPo16QcjQLdIh1OMEOUxilY404o9w=="; }; }; - "@node-red/nodes-1.1.3" = { + "@node-red/nodes-1.2.1" = { name = "_at_node-red_slash_nodes"; packageName = "@node-red/nodes"; - version = "1.1.3"; + version = "1.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/@node-red/nodes/-/nodes-1.1.3.tgz"; - sha512 = "XAMSiQrBPqpG7/XZqquZ5V1F/ibaDr/e96BrforFfkVGdzeb/5I+/MI2bSl3s/pJiuj4CuKSkQ7gWKbNwa4mvQ=="; + url = "https://registry.npmjs.org/@node-red/nodes/-/nodes-1.2.1.tgz"; + sha512 = "YHYuxeIiy1v5aBrmHpbiYH2763satuH6DEGYn7hpLgwR+PCcks4AaXAQFPTAwYJ+2r224m9WHkyHGgcvU59QhA=="; }; }; - "@node-red/registry-1.1.3" = { + "@node-red/registry-1.2.1" = { name = "_at_node-red_slash_registry"; packageName = "@node-red/registry"; - version = "1.1.3"; + version = "1.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/@node-red/registry/-/registry-1.1.3.tgz"; - sha512 = "ULvrgC7fpClTHluiQcc4EptaYRPEoKdqfozSxL6XJW5x1BRNU9Iv7+5txhKoumcy7a54bavol32VA7/JRyewjg=="; + url = "https://registry.npmjs.org/@node-red/registry/-/registry-1.2.1.tgz"; + sha512 = "2lm60rATnuWNgvMVh+dHS0T6xIJzwuESrMZjowhzdDr5MvUrYcqVq6NEbPWsjCaqjoQyLGJNKPcdJVySRvdvmw=="; }; }; - "@node-red/runtime-1.1.3" = { + "@node-red/runtime-1.2.1" = { name = "_at_node-red_slash_runtime"; packageName = "@node-red/runtime"; - version = "1.1.3"; + version = "1.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/@node-red/runtime/-/runtime-1.1.3.tgz"; - sha512 = 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"@oclif/plugin-plugins-1.9.1" = { + name = "_at_oclif_slash_plugin-plugins"; + packageName = "@oclif/plugin-plugins"; + version = "1.9.1"; + src = fetchurl { + url = "https://registry.npmjs.org/@oclif/plugin-plugins/-/plugin-plugins-1.9.1.tgz"; + sha512 = "/lE644CeLZ9ZNpDzHTKSadUtHjo86CbKZBazJiBEeH3LAzf90AeiX447slVByGIAHOglvPgWLKaTUGuWdF/iwQ=="; + }; + }; "@oclif/plugin-warn-if-update-available-1.7.0" = { name = "_at_oclif_slash_plugin-warn-if-update-available"; packageName = "@oclif/plugin-warn-if-update-available"; @@ -3919,13 +3973,13 @@ let sha512 = "uc6FmPEegAZawSHjUMFQwU7EjaDn7zy1iD/KD/wBROL9F4378OES8MKMYHoRAKT61Fk7LxVKZSDR5VespMQiqw=="; }; }; - "@prettier/plugin-pug-1.8.1" = { + "@prettier/plugin-pug-1.9.0" = { name = "_at_prettier_slash_plugin-pug"; packageName = "@prettier/plugin-pug"; - version = "1.8.1"; + version = "1.9.0"; src = fetchurl { - url = "https://registry.npmjs.org/@prettier/plugin-pug/-/plugin-pug-1.8.1.tgz"; - sha512 = 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packageName = "@serverless/enterprise-plugin"; - version = "4.0.4"; + version = "4.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/@serverless/enterprise-plugin/-/enterprise-plugin-4.0.4.tgz"; - sha512 = "B+I1tZWWJN2Ziwp34FZ9umbu6cZ5Pv8lHA6iOtYzMqq6r22xF/9rwxY3fCdguo+Szd6t7RFb0zIW2RuBRgktVA=="; + url = "https://registry.npmjs.org/@serverless/enterprise-plugin/-/enterprise-plugin-4.1.1.tgz"; + sha512 = "ga9g/bRyA6LCckYPU8jvx63Q9+Po/yZxbdbYb2KiCZ+0S1YcQQsjDJwsOTAAgQ6AEp95TtrQkn3BycYTSGEm7A=="; }; }; "@serverless/event-mocks-1.1.1" = { @@ -4252,22 +4306,22 @@ let sha512 = "YAV5V/y+XIOfd+HEVeXfPWZb8C6QLruFk9tBivoX2roQLWVq145s4uxf8D0QioCueuRzkukHUS4JIj+KVoS34A=="; }; }; - "@serverless/platform-client-2.1.0" = { + "@serverless/platform-client-3.1.2" = { name = "_at_serverless_slash_platform-client"; packageName = "@serverless/platform-client"; - version = "2.1.0"; + version = "3.1.2"; src = fetchurl { - url = 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= { name = "_at_types_slash_lodash"; packageName = "@types/lodash"; - version = "4.14.161"; + version = "4.14.162"; src = fetchurl { - url = "https://registry.npmjs.org/@types/lodash/-/lodash-4.14.161.tgz"; - sha512 = "EP6O3Jkr7bXvZZSZYlsgt5DIjiGr0dXP1/jVEwVLTFgg0d+3lWVQkRavYVQszV7dYUwvg0B8R0MBDpcmXg7XIA=="; + url = "https://registry.npmjs.org/@types/lodash/-/lodash-4.14.162.tgz"; + sha512 = "alvcho1kRUnnD1Gcl4J+hK0eencvzq9rmzvFPRmP5rPHx9VVsJj6bKLTATPVf9ktgv4ujzh7T+XWKp+jhuODig=="; }; }; "@types/long-4.0.1" = { @@ -5458,13 +5539,13 @@ let sha512 = "1GJnq7RwuFPRicMHdT53vza5v39nep9OKIbozxNUpFXP04CydcdWrqpZQ+MlVdlLFCisWnnt09xughajjWpFsw=="; }; }; - "@types/node-10.17.37" = { + "@types/node-10.17.40" = { name = "_at_types_slash_node"; packageName = "@types/node"; - version = "10.17.37"; + version = "10.17.40"; src = fetchurl { - url = "https://registry.npmjs.org/@types/node/-/node-10.17.37.tgz"; - sha512 = 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packageName = "async-retry"; @@ -9229,13 +9373,13 @@ let sha512 = "kNOjDqAh7px0XWNI+4QbzoiR/nTkHAWNud2uvnJquD1/x5a7EQZMJT0AczqK0Qn67oY/TTQ1LbUKajZpp3I9tQ=="; }; }; - "atomically-1.3.2" = { + "atomically-1.5.0" = { name = "atomically"; packageName = "atomically"; - version = "1.3.2"; + version = "1.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/atomically/-/atomically-1.3.2.tgz"; - sha512 = "MAiqx5ir1nOoMeG2vLXJnj4oFROJYB1hMqa2aAo6GQVIkPdkIcrq9W9SR0OaRtvEowO7Y2bsXqKFuDMTO4iOAQ=="; + url = "https://registry.npmjs.org/atomically/-/atomically-1.5.0.tgz"; + sha512 = "BTkqh410x70yF7iFtJxnL7N5j6HU0JYrJpvLUbZNM4u9rvCPveqKo6nFM9aFrjAOOpzPBnxKVncJ8o/GfEx18g=="; }; }; "attach-ware-1.1.1" = { @@ -9319,13 +9463,13 @@ let sha1 = "00f35b2d27ac91b1f0d3ef2084c98cf1d1f0adc3"; }; }; - "aws-sdk-2.769.0" = { + "aws-sdk-2.773.0" = { name = "aws-sdk"; packageName = "aws-sdk"; - version = "2.769.0"; + version = "2.773.0"; src = fetchurl { - url = 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src = fetchurl { + url = "https://registry.npmjs.org/buffermaker/-/buffermaker-1.2.1.tgz"; + sha512 = "IdnyU2jDHU65U63JuVQNTHiWjPRH0CS3aYd/WPaEwyX84rFdukhOduAVb1jwUScmb5X0JWPw8NZOrhoLMiyAHQ=="; + }; + }; "buffers-0.1.1" = { name = "buffers"; packageName = "buffers"; @@ -11902,6 +12064,15 @@ let sha512 = "8KMDF1Vz2gzOq54ONPJS65IvTUaB1cHJ2DMM7MbPmLZljDH1qpzzLsWdiN9pHh6qvkRVDTi/07+eNGch/oLU4w=="; }; }; + "camelcase-6.1.0" = { + name = "camelcase"; + packageName = "camelcase"; + version = "6.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/camelcase/-/camelcase-6.1.0.tgz"; + sha512 = "WCMml9ivU60+8rEJgELlFp1gxFcEGxwYleE3bziHEDeqsqAWGHdimB7beBFGjLzVNgPGyDsfgXLQEYMpmIFnVQ=="; + }; + }; "camelcase-keys-2.1.0" = { name = "camelcase-keys"; packageName = "camelcase-keys"; @@ -11947,13 +12118,13 @@ let sha512 = "bsTwuIg/BZZK/vreVTYYbSWoe2F+71P7K5QGEX+pT250DZbfU1MQ5prOKpPR+LL6uWKK3KMwMCAS74QB3Um1uw=="; }; }; - "caniuse-lite-1.0.30001144" = { + "caniuse-lite-1.0.30001148" = { name = "caniuse-lite"; packageName = "caniuse-lite"; - version = "1.0.30001144"; + version = "1.0.30001148"; src = fetchurl { - url = "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001144.tgz"; - sha512 = "4GQTEWNMnVZVOFG3BK0xvGeaDAtiPAbG2N8yuMXuXzx/c2Vd4XoMPO8+E918zeXn5IF0FRVtGShBfkfQea2wHQ=="; + url = "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001148.tgz"; + sha512 = "E66qcd0KMKZHNJQt9hiLZGE3J4zuTqE1OnU53miEVtylFbwOEmeA5OsRu90noZful+XGSQOni1aT2tiqu/9yYw=="; }; }; "canvas-2.6.1" = { @@ -12361,6 +12532,15 @@ let sha1 = "fa5ae42cc60121133d296d0b46d983215f7268ea"; }; }; + "cheerio-0.19.0" = { + name = "cheerio"; + packageName = "cheerio"; + version = "0.19.0"; + src = fetchurl { + url = "https://registry.npmjs.org/cheerio/-/cheerio-0.19.0.tgz"; + sha1 = "772e7015f2ee29965096d71ea4175b75ab354925"; + }; + }; "cheerio-0.20.0" = { name = "cheerio"; packageName = "cheerio"; @@ -12487,6 +12667,15 @@ let sha512 = "IZHaDeBeI+sZJRX7lGcXsdzgvZqKv6sECqsbErJA4mHWfpRrD8B97kSFN4cQz6nGBGiuFia1MKR4d6c1o8Cv7A=="; }; }; + "chokidar-3.4.3" = { + name = "chokidar"; + packageName = "chokidar"; + version = "3.4.3"; + src = fetchurl { + url = "https://registry.npmjs.org/chokidar/-/chokidar-3.4.3.tgz"; + sha512 = "DtM3g7juCXQxFVSNPNByEC2+NImtBuxQQvWlHunpJIS5Ocr0lG306cC7FCi7cEA0fzmybPUIl4txBIobk1gGOQ=="; + }; + }; "chownr-0.0.2" = { name = "chownr"; packageName = "chownr"; @@ -12676,6 +12865,15 @@ let sha512 = "UZK3NBx2Mca+b5LsG7bY183pHWt5Y1xts4P3Pz7ENTwGVnJOUWbRb3ocjvX7hx9tq/yTAdclXm9sZ38gNuem4A=="; }; }; + "clap-1.2.3" = { + name = "clap"; + packageName = "clap"; + version = "1.2.3"; + src = fetchurl { + url = "https://registry.npmjs.org/clap/-/clap-1.2.3.tgz"; + sha512 = "4CoL/A3hf90V3VIEjeuhSvlGFEHKzOz+Wfc2IVZc+FaUgU0ZQafJTP49fvnULipOPcAfqhyI2duwQyns6xqjYA=="; + }; + }; "clarinet-0.11.0" = { name = "clarinet"; packageName = "clarinet"; @@ -12892,13 +13090,13 @@ let sha512 = "1QL4544moEsDVH9T/l6Cemov/37iv1RtoKf7NJ04A60+4MREXNfx/QvavbH6QoGdsD4N4Mwy49cmaINR/o2mdg=="; }; }; - "cli-spinners-2.4.0" = { + "cli-spinners-2.5.0" = { name = "cli-spinners"; packageName = "cli-spinners"; - version = "2.4.0"; + version = "2.5.0"; src = fetchurl { - url = "https://registry.npmjs.org/cli-spinners/-/cli-spinners-2.4.0.tgz"; - sha512 = "sJAofoarcm76ZGpuooaO0eDy8saEy+YoZBLjC4h8srt4jeBnkYeOgqxgsJQTpyt2LjI5PTfLJHSL+41Yu4fEJA=="; + url = "https://registry.npmjs.org/cli-spinners/-/cli-spinners-2.5.0.tgz"; + sha512 = "PC+AmIuK04E6aeSs/pUccSujsTzBhu4HzC2dL+CfJB/Jcc2qTRbEwZQDfIUpt2Xl8BodYBEq8w4fc0kU2I9DjQ=="; }; }; "cli-table-0.3.1" = { @@ -13126,13 +13324,13 @@ let sha512 = "t6wbgtoCXvAzst7QgXxJYqPt0usEfbgQdftEPbLL/cvv6HPE5VgvqCuAIDR0NgU52ds6rFwqrgakNLrHEjCbrQ=="; }; }; - "cliui-7.0.1" = { + "cliui-7.0.3" = { name = "cliui"; packageName = "cliui"; - version = "7.0.1"; + version = "7.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/cliui/-/cliui-7.0.1.tgz"; - sha512 = "rcvHOWyGyid6I1WjT/3NatKj2kDt9OdSHSXpyLXaMWFbKpGACNW8pRhhdPUq9MWUOdwn8Rz9AVETjF4105rZZQ=="; + url = "https://registry.npmjs.org/cliui/-/cliui-7.0.3.tgz"; + sha512 = "Gj3QHTkVMPKqwP3f7B4KPkBZRMR9r4rfi5bXFpg1a+Svvj8l7q5CnkBkVQzfxT5DFSsGk2+PascOgL0JYkL2kw=="; }; }; "clivas-0.1.4" = { @@ -13279,6 +13477,15 @@ let sha512 = "6/bPho624p3S2pMyvP5kKBPXnI3ufHLObBFCfgx+LkeR5lg2XYy2hqZqUf45ypD8COn2bhgGJSUE+l5dhNBieA=="; }; }; + "clubhouse-lib-0.10.0" = { + name = "clubhouse-lib"; + packageName = "clubhouse-lib"; + version = "0.10.0"; + src = fetchurl { + url = "https://registry.npmjs.org/clubhouse-lib/-/clubhouse-lib-0.10.0.tgz"; + sha512 = "ZZjKqOeNgXtz40seJmSYbfAsIGJVzDIAn30w0QRmnyXHFrjEXhW/K8ZgRw5FtsezYFQEuZXSp93S0UkKJHuhKg=="; + }; + }; "cmd-shim-3.0.3" = { name = "cmd-shim"; packageName = "cmd-shim"; @@ -13360,6 +13567,15 @@ let sha1 = "f81b3eb8a86675fec51e3d883a7f564e873c9389"; }; }; + "coa-1.0.4" = { + name = "coa"; + packageName = "coa"; + version = "1.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/coa/-/coa-1.0.4.tgz"; + sha1 = "a9ef153660d6a86a8bdec0289a5c684d217432fd"; + }; + }; "coa-2.0.2" = { name = "coa"; packageName = "coa"; @@ -13486,13 +13702,13 @@ let sha512 = "jCpd5+s0s0t7p3pHQKpnJ0TpQKKdleP71LWcA0aqiljpiuAkOSUFN/dyH8ZwF0hRmFlrIuRhufds1QyEP9EB+w=="; }; }; - "color-3.1.2" = { + "color-3.1.3" = { name = "color"; packageName = "color"; - version = "3.1.2"; + version = "3.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/color/-/color-3.1.2.tgz"; - sha512 = "vXTJhHebByxZn3lDvDJYw4lR5+uB3vuoHsuYA5AKuxRVn5wzzIfQKGLBmgdVRHKTJYeK5rvJcHnrd0Li49CFpg=="; + url = "https://registry.npmjs.org/color/-/color-3.1.3.tgz"; + sha512 = "xgXAcTHa2HeFCGLE9Xs/R82hujGtu9Jd9x4NW3T34+OMs7VoPsjwzRczKHvTAHeJwWFwX5j15+MgAppE8ztObQ=="; }; }; "color-convert-1.9.3" = { @@ -13531,13 +13747,13 @@ let sha512 = "dOy+3AuW3a2wNbZHIuMZpTcgjGuLU/uBL/ubcZF9OXbDo8ff4O8yVp5Bf0efS8uEoYo5q4Fx7dY9OgQGXgAsQA=="; }; }; - "color-string-1.5.3" = { + "color-string-1.5.4" = { name = "color-string"; packageName = "color-string"; - version = "1.5.3"; + version = "1.5.4"; src = fetchurl { - url = "https://registry.npmjs.org/color-string/-/color-string-1.5.3.tgz"; - sha512 = "dC2C5qeWoYkxki5UAXapdjqO672AM4vZuPGRQfO8b5HKuKGBbKWpITyDYN7TOFKvRW7kOgAn3746clDBMDJyQw=="; + url = "https://registry.npmjs.org/color-string/-/color-string-1.5.4.tgz"; + sha512 = "57yF5yt8Xa3czSEW1jfQDE79Idk0+AkN/4KWad6tbdxUmAs3MvjxlWSWD4deYytcRfoZ9nhKyFl1kj5tBvidbw=="; }; }; "color-support-1.1.3" = { @@ -13594,6 +13810,15 @@ let sha1 = "0433f44d809680fdeb60ed260f1b0c262e82a40b"; }; }; + "colors-1.1.2" = { + name = "colors"; + packageName = "colors"; + version = "1.1.2"; + src = fetchurl { + url = "https://registry.npmjs.org/colors/-/colors-1.1.2.tgz"; + sha1 = "168a4701756b6a7f51a12ce0c97bfa28c084ed63"; + }; + }; "colors-1.3.3" = { name = "colors"; packageName = "colors"; @@ -13711,6 +13936,15 @@ let sha512 = "MxS8Ad995KpdAC0Jopo/ovGIroV/m0KHwzKfXxKag6FHOkGsH8/lv5yjgablcRxCJJC0oJeUMuO/gmaq+Wq46g=="; }; }; + "command-line-usage-6.1.0" = { + name = "command-line-usage"; + packageName = "command-line-usage"; + version = "6.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/command-line-usage/-/command-line-usage-6.1.0.tgz"; + sha512 = "Ew1clU4pkUeo6AFVDFxCbnN7GIZfXl48HIOQeFQnkO3oOqvpI7wdqtLRwv9iOCZ/7A+z4csVZeiDdEcj8g6Wiw=="; + }; + }; "commander-0.6.1" = { name = "commander"; packageName = "commander"; @@ -14170,6 +14404,15 @@ let sha512 = "a1eOIcu8+7lUInge4Rpf/n4Krkf3Dd9lqhljRzII1/Zno/kRtUWnznPO3jOKBmTEktkt3fkxisUcivoj0ebzoA=="; }; }; + "configstore-1.4.0" = { + name = "configstore"; + packageName = "configstore"; + version = "1.4.0"; + src = fetchurl { + url = "https://registry.npmjs.org/configstore/-/configstore-1.4.0.tgz"; + sha1 = "c35781d0501d268c25c54b8b17f6240e8a4fb021"; + }; + }; "configstore-3.1.5" = { name = "configstore"; packageName = "configstore"; @@ -15314,6 +15557,15 @@ let sha1 = "6963b752aaf59babbd3fea3ec0da5d44e9122efb"; }; }; + "css-select-1.0.0" = { + name = "css-select"; + packageName = "css-select"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/css-select/-/css-select-1.0.0.tgz"; + sha1 = "b1121ca51848dd264e2244d058cee254deeb44b0"; + }; + }; "css-select-1.2.0" = { name = "css-select"; packageName = "css-select"; @@ -15377,6 +15629,15 @@ let sha512 = "7UvkEYgBAHRG9Nt980lYxjsTrCyHFN53ky3wVsDkiMdVqylqRt+Zc+jm5qw7/qyOvN2dHSYtX0e4MbCCExSvnA=="; }; }; + "css-what-1.0.0" = { + name = "css-what"; + packageName = "css-what"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/css-what/-/css-what-1.0.0.tgz"; + sha1 = "d7cc2df45180666f99d2b14462639469e00f736c"; + }; + }; "css-what-2.1.3" = { name = "css-what"; packageName = "css-what"; @@ -15386,13 +15647,13 @@ let sha512 = "a+EPoD+uZiNfh+5fxw2nO9QwFa6nJe2Or35fGY6Ipw1R3R4AGz1d1TEZrCegvw2YTmZ0jXirGYlzxxpYSHwpEg=="; }; }; - "css-what-3.4.1" = { + "css-what-3.4.2" = { name = "css-what"; packageName = "css-what"; - version = "3.4.1"; + version = "3.4.2"; src = fetchurl { - url = "https://registry.npmjs.org/css-what/-/css-what-3.4.1.tgz"; - sha512 = "wHOppVDKl4vTAOWzJt5Ek37Sgd9qq1Bmj/T1OjvicWbU5W7ru7Pqbn0Jdqii3Drx/h+dixHKXNhZYx7blthL7g=="; + url = "https://registry.npmjs.org/css-what/-/css-what-3.4.2.tgz"; + sha512 = "ACUm3L0/jiZTqfzRM3Hi9Q8eZqd6IK37mMWPLz9PJxkLWllYeRf+EHUSHYEtFop2Eqytaq1FizFVh7XfBnXCDQ=="; }; }; "cssauron-1.4.0" = { @@ -15476,6 +15737,15 @@ let sha512 = "WcKx5OY+KoSIAxBW6UBBRay1U6vkYheCdjyVNDm85zt5K9mHoGOfsOsqIszfAqrQQFIIKgjh2+FDgIj/zsl21Q=="; }; }; + "csso-2.0.0" = { + name = "csso"; + packageName = "csso"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/csso/-/csso-2.0.0.tgz"; + sha1 = "178b43a44621221c27756086f531e02f42900ee8"; + }; + }; "csso-4.0.3" = { name = "csso"; packageName = "csso"; @@ -16034,6 +16304,15 @@ let sha512 = "vKQ9DTQPN1FLYiiEEOQ6IBGFqvjCa5rSK3cWMy/Nespm5d/x3dGFT9UBZnkLxCwua/IXBi2TYnwTEpsOvhC4UQ=="; }; }; + "data-uri-to-buffer-3.0.1" = { + name = "data-uri-to-buffer"; + packageName = "data-uri-to-buffer"; + version = "3.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/data-uri-to-buffer/-/data-uri-to-buffer-3.0.1.tgz"; + sha512 = "WboRycPNsVw3B3TL559F7kuBUM4d8CgMEvk6xEJlOp7OBPjt6G7z8WMWlD2rOFZLk6OYfFIUGsCOWzcQH9K2og=="; + }; + }; "data-urls-1.1.0" = { name = "data-urls"; packageName = "data-urls"; @@ -16043,6 +16322,15 @@ let sha512 = "YTWYI9se1P55u58gL5GkQHW4P6VJBJ5iBT+B5a7i2Tjadhv52paJG0qHX4A0OR6/t52odI64KP2YvFpkDOi3eQ=="; }; }; + "data-urls-2.0.0" = { + name = "data-urls"; + packageName = "data-urls"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/data-urls/-/data-urls-2.0.0.tgz"; + sha512 = "X5eWTSXO/BJmpdIKCRuKUgSCgAN0OwliVK3yPKbwIWU1Tdw5BRajxlzMidvh+gwko9AfQ9zIj52pzF91Q3YAvQ=="; + }; + }; "dataloader-2.0.0" = { name = "dataloader"; packageName = "dataloader"; @@ -16124,13 +16412,13 @@ let sha512 = "3VmRXEtw7RZKAf+4Tv1Ym9AGeo8r8+CjDi26x+7SYQil1UqtqdaokhzoEJohqlzt0m5kacJSDhJQkG/LWhpRBw=="; }; }; - "dayjs-1.9.1" = { + "dayjs-1.9.3" = { name = "dayjs"; packageName = "dayjs"; - version = "1.9.1"; + version = "1.9.3"; src = fetchurl { - url = "https://registry.npmjs.org/dayjs/-/dayjs-1.9.1.tgz"; - sha512 = "01NCTBg8cuMJG1OQc6PR7T66+AFYiPwgDvdJmvJBn29NGzIG+DIFxPLNjHzwz3cpFIvG+NcwIjP9hSaPVoOaDg=="; + url = "https://registry.npmjs.org/dayjs/-/dayjs-1.9.3.tgz"; + sha512 = "V+1SyIvkS+HmNbN1G7A9+ERbFTV9KTXu6Oor98v2xHmzzpp52OIJhQuJSTywWuBY5pyAEmlwbCi1Me87n/SLOw=="; }; }; "deasync-0.1.15" = { @@ -16259,6 +16547,15 @@ let sha512 = "pYAIzeRo8J6KPEaJ0VWOh5Pzkbw/RetuzehGM7QRRX5he4fPHx2rdKMB256ehJCkX+XRQm16eZLqLNS8RSZXZw=="; }; }; + "debug-4.2.0" = { + name = "debug"; + packageName = "debug"; + version = "4.2.0"; + src = fetchurl { + url = "https://registry.npmjs.org/debug/-/debug-4.2.0.tgz"; + sha512 = "IX2ncY78vDTjZMFUdmsvIRFY2Cf4FnD0wRs+nQwJU8Lu99/tPFdb0VybiiMTPe3I6rQmwsqQqRBvxU+bZ/I8sg=="; + }; + }; "debug-4.3.0" = { name = "debug"; packageName = "debug"; @@ -16322,6 +16619,15 @@ let sha1 = "d171a87933252807eb3cb61dc1c1445d078df2d9"; }; }; + "decimal.js-10.2.1" = { + name = "decimal.js"; + packageName = "decimal.js"; + version = "10.2.1"; + src = fetchurl { + url = "https://registry.npmjs.org/decimal.js/-/decimal.js-10.2.1.tgz"; + sha512 = "KaL7+6Fw6i5A2XSnsbhm/6B+NuEA7TZ4vqxnd5tXz9sbKtrN9Srj8ab4vKVdK8YAqZO9P1kg45Y6YLoduPf+kw=="; + }; + }; "decimal.js-7.5.1" = { name = "decimal.js"; packageName = "decimal.js"; @@ -16763,6 +17069,15 @@ let sha1 = "fcf490a37ece266464d9cc431ab98c5819ced095"; }; }; + "degenerator-2.2.0" = { + name = "degenerator"; + packageName = "degenerator"; + version = "2.2.0"; + src = fetchurl { + url = "https://registry.npmjs.org/degenerator/-/degenerator-2.2.0.tgz"; + sha512 = 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"domexception"; + packageName = "domexception"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/domexception/-/domexception-2.0.1.tgz"; + sha512 = "yxJ2mFy/sibVQlu5qHjOkf9J3K6zgmCxgJ94u2EdvDOV09H+32LtRswEcUsmUWN72pVLOEnTSRaIVVzVQgS0dg=="; + }; + }; "domhandler-2.2.1" = { name = "domhandler"; packageName = "domhandler"; @@ -18257,13 +18581,13 @@ let sha512 = "dldq3ZfFtgVTJMLjOe+/3sROTzALlL9E34V4/sDtUd/KlBSS0s6U1/+WPE1B4sj9CXHJpL1M6rhNJnc9Wbal9w=="; }; }; - "electron-to-chromium-1.3.578" = { + "electron-to-chromium-1.3.582" = { name = "electron-to-chromium"; packageName = "electron-to-chromium"; - version = "1.3.578"; + version = "1.3.582"; src = fetchurl { - url = "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.3.578.tgz"; - sha512 = "z4gU6dA1CbBJsAErW5swTGAaU2TBzc2mPAonJb00zqW1rOraDo2zfBMDRvaz9cVic+0JEZiYbHWPw/fTaZlG2Q=="; + url = "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.3.582.tgz"; + sha512 = 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packageName = "escalade"; - version = "3.1.0"; + version = "3.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/escalade/-/escalade-3.1.0.tgz"; - sha512 = "mAk+hPSO8fLDkhV7V0dXazH5pDc6MrjBTPyD3VeKzxnVFjH1MIxbCdqGZB9O8+EwWakZs3ZCbDS4IpRt79V1ig=="; + url = "https://registry.npmjs.org/escalade/-/escalade-3.1.1.tgz"; + sha512 = "k0er2gUkLf8O0zKJiAhmkTnJlTvINGv7ygDNPbeIsX/TJjGJZHuh9B2UxbsaEkmlEo9MfhrSzmhIlhRlI2GXnw=="; }; }; "escape-goat-2.1.1" = { @@ -19185,13 +19518,13 @@ let sha512 = "K+Iayyo2LtyYhDSYwz5D5QdWw0hCacNzyq1Y821Xna2xSJj7cijoLLYmLxTQgcgZ9mC61nryMy9S7GRbYpI5Ig=="; }; }; - "eslint-7.10.0" = { + "eslint-7.11.0" = { name = "eslint"; packageName = "eslint"; - version = "7.10.0"; + version = "7.11.0"; src = fetchurl { - url = "https://registry.npmjs.org/eslint/-/eslint-7.10.0.tgz"; - sha512 = "BDVffmqWl7JJXqCjAK6lWtcQThZB/aP1HXSH1JKwGwv0LQEdvpR7qzNrUT487RM39B5goWuboFad5ovMBmD8yA=="; + url = "https://registry.npmjs.org/eslint/-/eslint-7.11.0.tgz"; + sha512 = 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"esprima"; + version = "2.7.3"; + src = fetchurl { + url = "https://registry.npmjs.org/esprima/-/esprima-2.7.3.tgz"; + sha1 = "96e3b70d5779f6ad49cd032673d1c312767ba581"; + }; + }; "esprima-3.1.3" = { name = "esprima"; packageName = "esprima"; @@ -19977,13 +20319,13 @@ let sha1 = "a793d3ac0cad4c6ab571e9968fbbab6cb2532929"; }; }; - "expo-pwa-0.0.44" = { + "expo-pwa-0.0.45" = { name = "expo-pwa"; packageName = "expo-pwa"; - version = "0.0.44"; + version = "0.0.45"; src = fetchurl { - url = "https://registry.npmjs.org/expo-pwa/-/expo-pwa-0.0.44.tgz"; - sha512 = "GB5HKftWXh3G43kftpD/ZhuHIKSukW+7eA1UdxkIKkNVqHy2Co3CNrVQFogDl5H3XY744rJKXJj5Jnz/jMxOtg=="; + url = "https://registry.npmjs.org/expo-pwa/-/expo-pwa-0.0.45.tgz"; + sha512 = "1q0t+5L4JEb8iCAaN0ME6/P/h83HVrOXBU8AzDRtrTXPWC0R0IvHr9cm1DCnzWTHtBcy6kA+H0rIvxledllaBQ=="; }; }; "express-2.5.11" = { @@ -20652,6 +20994,15 @@ let sha512 = "aN3pcx/DSmtyoovUudctc8+6Hl4T+hI9GBBHLjA76jdZl7+b1sgh5g4k+u/GL3dTy1/pnYzKp69FpJ0OicE3Wg=="; }; }; + "fetch-everywhere-1.0.5" = { + name = "fetch-everywhere"; + packageName = "fetch-everywhere"; + version = "1.0.5"; + src = fetchurl { + url = "https://registry.npmjs.org/fetch-everywhere/-/fetch-everywhere-1.0.5.tgz"; + sha1 = "b2497f47a57d9026b3907c09756acf5f4bd34e8b"; + }; + }; "fields-0.1.24" = { name = "fields"; packageName = "fields"; @@ -20841,6 +21192,15 @@ let sha512 = "0Zt+s3L7Vf1biwWZ29aARiVYLx7iMGnEUl9x33fbB/j3jR81u/O2LbqK+Bm1CDSNDKVtJ/YjwY7TUd5SkeLQLw=="; }; }; + "file-uri-to-path-2.0.0" = { + name = "file-uri-to-path"; + packageName = "file-uri-to-path"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/file-uri-to-path/-/file-uri-to-path-2.0.0.tgz"; + sha512 = "hjPFI8oE/2iQPVe4gbrJ73Pp+Xfub2+WI2LlXDbsaJBwT5wuMh35WNWVYYTpnz895shtwfyutMFLFywpQAFdLg=="; + }; + }; "filelist-1.0.1" = { name = "filelist"; packageName = "filelist"; @@ -21201,13 +21561,13 @@ let sha512 = "lNaHNVymajmk0OJMBn8fVUAU1BtDeKIqKoVhk4xAALB57aALg6b4W0MfJ/cUE0g9YBXy5XhSlPIpYIJ7HaY/3Q=="; }; }; - "flat-4.1.0" = { + "flat-4.1.1" = { name = "flat"; packageName = "flat"; - version = "4.1.0"; + version = "4.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/flat/-/flat-4.1.0.tgz"; - sha512 = "Px/TiLIznH7gEDlPXcUD4KnBusa6kR6ayRUVcnEAbreRIuhkqow/mun59BuRXwoYk7ZQOLW1ZM05ilIvK38hFw=="; + url = "https://registry.npmjs.org/flat/-/flat-4.1.1.tgz"; + sha512 = "FmTtBsHskrU6FJ2VxCnsDb84wu9zhmO3cUX2kGFb5tuwhfXxGciiT0oRY+cck35QmG+NmGh5eLz6lLCpWTqwpA=="; }; }; "flat-5.0.2" = { @@ -21309,13 +21669,13 @@ let sha512 = "jlbUu0XkbpXeXhan5xyTqVK1jmEKNxE8hpzznI3TThHTr76GiFwK0iRzhDo4KNy+S9h/KxHaqVhTP86vA6wHCg=="; }; }; - "flow-parser-0.135.0" = { + "flow-parser-0.136.0" = { name = "flow-parser"; packageName = "flow-parser"; - version = "0.135.0"; + version = "0.136.0"; src = fetchurl { - url = "https://registry.npmjs.org/flow-parser/-/flow-parser-0.135.0.tgz"; - sha512 = "ev8SvmG+XU9D6WgHVezP4kY3Myr1tJvTUTEi7mbhhj+rn889K7YXdakte6oqXNLIJYJ2f5Fuw18zXTVa1NO8Kw=="; + url = "https://registry.npmjs.org/flow-parser/-/flow-parser-0.136.0.tgz"; + sha512 = "PB2vYAqmz+dRikpx8TpNgRtBsyemP+7oQa0BcPZWnGABlJlB2WgJc/Lx0HeEPOUxDO/TxBbPaIHsffEIL9M6BQ=="; }; }; "fluent-ffmpeg-2.1.2" = { @@ -21723,13 +22083,13 @@ let sha1 = "98c23dab1175657b8c0573e8ceccd91b0ff18c84"; }; }; - "fp-ts-2.8.3" = { + "fp-ts-2.8.4" = { name = "fp-ts"; packageName = "fp-ts"; - version = "2.8.3"; + version = "2.8.4"; src = fetchurl { - url = "https://registry.npmjs.org/fp-ts/-/fp-ts-2.8.3.tgz"; - sha512 = "oGD3BTSzFCPs9alaI/2gh0SCNKyhPXkpeIBvkXNvnoczHfDAUd2HHtotCdLO0hOTTTTx8VKA0mhhR7LUNo+cKg=="; + url = "https://registry.npmjs.org/fp-ts/-/fp-ts-2.8.4.tgz"; + sha512 = "J+kwce5SysU0YKuZ3aCnFk+dyezZD1mij6u26w1fCVfuLYgJR4eeXmVfJiUjthpZ+4yCRkRfcwMI5SkGw52oFA=="; }; }; "fragment-cache-0.2.1" = { @@ -22515,6 +22875,15 @@ let sha512 = "v7LT/s8kVjs+Tx0ykk1I+H/rbpzkHvuIq87LmeXptcf5sNWm9uQiwjNAt94SJPA1zOlCntmnOlJvVWKmzsxG8Q=="; }; }; + "get-uri-3.0.2" = { + name = "get-uri"; + packageName = "get-uri"; + version = "3.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/get-uri/-/get-uri-3.0.2.tgz"; + sha512 = "+5s0SJbGoyiJTZZ2JTpFPLMPSch72KEqGOTvQsBqg0RBWvwhWUSYZFAtz3TPW0GXJuLBJPts1E241iHg+VRfhg=="; + }; + }; "get-value-2.0.6" = { name = "get-value"; packageName = "get-value"; @@ -22569,13 +22938,13 @@ let sha1 = "ee95be37106fd8748a96f8d1db4baea89e1bfa8a"; }; }; - "gh-release-fetch-1.0.4" = { + "gh-release-fetch-1.1.0" = { name = "gh-release-fetch"; packageName = "gh-release-fetch"; - version = "1.0.4"; + version = "1.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/gh-release-fetch/-/gh-release-fetch-1.0.4.tgz"; - sha512 = "uL2T1vCOr5HAuY1Cbtj+h1AOTWZ0Qvubi1s7KCRqKOiytVlTDHLYoPJ9TIJLEmNYbmuCtZVOtYsojf3REAAgbQ=="; + url = "https://registry.npmjs.org/gh-release-fetch/-/gh-release-fetch-1.1.0.tgz"; + sha512 = "c8Vb2g6yzTItFGooCH2yppiwu8BwoWheMAWHl/qor95XcuDjFgqMYw8QUtvR/da+ZII5EYDPonZTypvI2anm4Q=="; }; }; "git-apply-delta-0.0.7" = { @@ -22911,6 +23280,15 @@ let sha1 = "8c5a1494d2066c570cc3bfe4496175acc4d502ab"; }; }; + "glob-to-regexp-0.4.1" = { + name = "glob-to-regexp"; + packageName = "glob-to-regexp"; + version = "0.4.1"; + src = fetchurl { + url = "https://registry.npmjs.org/glob-to-regexp/-/glob-to-regexp-0.4.1.tgz"; + sha512 = "lkX1HJXwyMcprw/5YUZc2s7DrpAiHB21/V+E1rHUrVNokkvB6bqMzT0VfV6/86ZNabt1k14YOIaT7nDvOX3Iiw=="; + }; + }; "glob-watcher-5.0.5" = { name = "glob-watcher"; packageName = "glob-watcher"; @@ -23281,6 +23659,15 @@ let sha512 = "7en2XwH2MEqOsrK0xaKhbWibBoZqy+f1RSUoIeF1BLcnf+pyQdDsljWMfmOh+QKJwuvDIiKx38GtPh5wFdGGjg=="; }; }; + "got-3.3.1" = { + name = "got"; + packageName = "got"; + version = "3.3.1"; + src = fetchurl { + url = "https://registry.npmjs.org/got/-/got-3.3.1.tgz"; + sha1 = "e5d0ed4af55fc3eef4d56007769d98192bcb2eca"; + }; + }; "got-6.7.1" = { name = "got"; packageName = "got"; @@ -24055,13 +24442,13 @@ let sha1 = "78d7cbfc1e6d66303fe79837365984517b2f6ee1"; }; }; - "hasha-5.2.1" = { + "hasha-5.2.2" = { name = "hasha"; packageName = "hasha"; - version = "5.2.1"; + version = "5.2.2"; src = fetchurl { - url = "https://registry.npmjs.org/hasha/-/hasha-5.2.1.tgz"; - sha512 = "x15jnRSHTi3VmH+oHtVb9kgU/HuKOK8mjK8iCL3dPQXh4YJlUb9YSI8ZLiiqLAIvY2wuDIlZYZppy8vB2XISkQ=="; + url = "https://registry.npmjs.org/hasha/-/hasha-5.2.2.tgz"; + sha512 = "Hrp5vIK/xr5SkeN2onO32H0MgNZ0f17HRNH39WfL0SYUNOTZ5Lz1TJ8Pajo/87dYGEFlLMm7mIc/k/s6Bvz9HQ=="; }; }; "hasher-1.2.0" = { @@ -24199,6 +24586,15 @@ let sha512 = "WlztFuK+Lrvi3EggsqOkQ52rKbxkXL3RwB6t5lwoa8QLMemoWfBuL43eDrwOamJyR7uKQKdmKYaBH1NZBiIRrQ=="; }; }; + "hasurl-1.0.0" = { + name = "hasurl"; + packageName = "hasurl"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/hasurl/-/hasurl-1.0.0.tgz"; + sha512 = 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}; + "html-encoding-sniffer-2.0.1" = { + name = "html-encoding-sniffer"; + packageName = "html-encoding-sniffer"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/html-encoding-sniffer/-/html-encoding-sniffer-2.0.1.tgz"; + sha512 = "D5JbOMBIR/TVZkubHT+OyT2705QvogUW4IBn6nHd756OwieSF9aDYFj4dv6HHEVGYbHaLETa3WggZYWWMyy3ZQ=="; + }; + }; "html-entities-1.3.1" = { name = "html-entities"; packageName = "html-entities"; @@ -24604,13 +25009,13 @@ let sha1 = "3a03edc2214bca3b66424a3e7959349509cb0351"; }; }; - "htmlnano-0.2.6" = { + "htmlnano-0.2.7" = { name = "htmlnano"; packageName = "htmlnano"; - version = "0.2.6"; + version = "0.2.7"; src = fetchurl { - url = "https://registry.npmjs.org/htmlnano/-/htmlnano-0.2.6.tgz"; - sha512 = "HUY/99maFsWX2LRoGJpZ/8QRLCkyY0UU1El3wgLLFAHQlD3mCxCJJNcWJk5SBqaU49MLhIWVDW6cGBeuemvaPQ=="; + url = "https://registry.npmjs.org/htmlnano/-/htmlnano-0.2.7.tgz"; + sha512 = "ozbK3npguK3MTn77WCKngBtCDhc94fmEptPQsn+dO+uIWoEghIMKsjzCMnDJuu403M01ePg9GA5MpXhRBQ3PVg=="; }; }; "htmlparser2-3.10.1" = { @@ -24821,13 +25226,13 @@ let sha512 = "yHYTgWMQO8VvwNS22eLLloAkvungsKdKTLO8AJlftYIKNfJr3GK3zK0ZCfzDDGUBttdGc8xFy1mCitvNKQtC3Q=="; }; }; - "http-proxy-middleware-1.0.5" = { + "http-proxy-middleware-1.0.6" = { name = "http-proxy-middleware"; packageName = "http-proxy-middleware"; - version = "1.0.5"; + version = "1.0.6"; src = fetchurl { - url = "https://registry.npmjs.org/http-proxy-middleware/-/http-proxy-middleware-1.0.5.tgz"; - sha512 = "CKzML7u4RdGob8wuKI//H8Ein6wNTEQR7yjVEzPbhBLGdOfkfvgTnp2HLnniKBDP9QW4eG10/724iTWLBeER3g=="; + url = "https://registry.npmjs.org/http-proxy-middleware/-/http-proxy-middleware-1.0.6.tgz"; + sha512 = "NyL6ZB6cVni7pl+/IT2W0ni5ME00xR0sN27AQZZrpKn1b+qRh+mLbBxIq9Cq1oGfmTc7BUq4HB77mxwCaxAYNg=="; }; }; "http-signature-0.11.0" = { @@ -25316,13 +25721,13 @@ let sha512 = "O3sR1/opvCDGLEVcvrGTMtLac8GJ5IwZC4puPrLuRj3l7ICKvkmA0vGuU9OW8mV9WIBRnaxp5GJh9IEAaNOoYg=="; }; }; - "import-cwd-2.1.0" = { + "import-cwd-3.0.0" = { name = "import-cwd"; packageName = "import-cwd"; - version = "2.1.0"; + version = "3.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/import-cwd/-/import-cwd-2.1.0.tgz"; - sha1 = "aa6cf36e722761285cb371ec6519f53e2435b0a9"; + url = "https://registry.npmjs.org/import-cwd/-/import-cwd-3.0.0.tgz"; + sha512 = "4pnzH16plW+hgvRECbDWpQl3cqtvSofHWh44met7ESfZ8UZOWWddm8hEyDTqREJ9RbYHY8gi8DqmaelApoOGMg=="; }; }; "import-fresh-2.0.0" = { @@ -25343,15 +25748,6 @@ let sha512 = "6e1q1cnWP2RXD9/keSkxHScg508CdXqXWgWBaETNhyuBFz+kUZlKboh+ISK+bU++DmbHimVBrOz/zzPe0sZ3sQ=="; }; }; - "import-from-2.1.0" = { - name = "import-from"; - packageName = "import-from"; - version = "2.1.0"; - src = fetchurl { - url = "https://registry.npmjs.org/import-from/-/import-from-2.1.0.tgz"; - sha1 = "335db7f2a7affd53aaa471d4b8021dee36b7f3b1"; - }; - }; "import-from-3.0.0" = { name = "import-from"; packageName = "import-from"; @@ -25415,6 +25811,15 @@ let sha512 = "b6s04m3O+s3CGSbqDIyP4R6aAwAeYlVq9+WUWep6iHa8ETRf9yei1U48C5MmfJmV9AiLYYBKPMq/W+/WRpQmCQ=="; }; }; + "import-local-3.0.2" = { + name = "import-local"; + packageName = "import-local"; + version = "3.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/import-local/-/import-local-3.0.2.tgz"; + sha512 = "vjL3+w0oulAVZ0hBHnxa/Nm5TAurf9YLQJDhqRZyqb+VKGOB6LU8t9H1Nr5CIo16vh9XfJTOoHwU0B71S557gA=="; + }; + }; "imurmurhash-0.1.4" = { name = "imurmurhash"; packageName = "imurmurhash"; @@ -25496,6 +25901,15 @@ let sha512 = "IClj+Xz94+d7irH5qRyfJonOdfTzuDaifE6ZPWfx0N0+/ATZCbuTPq2prFl526urkQd90WyUKIh1DfBQ2hMz9A=="; }; }; + "infinity-agent-2.0.3" = { + name = "infinity-agent"; + packageName = "infinity-agent"; + version = "2.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/infinity-agent/-/infinity-agent-2.0.3.tgz"; + sha1 = "45e0e2ff7a9eb030b27d62b74b3744b7a7ac4216"; + }; + }; "inflected-2.1.0" = { name = "inflected"; packageName = "inflected"; @@ -25730,13 +26144,13 @@ let sha512 = "t8A0gFq0mOKGz8wmGBPh+M/AC8KSMMcn7dnHXzLWyKvLiRYWswQ6rg7d938hoR5tVP1GpHVmHOR6YP8G5dYhhQ=="; }; }; - "insert-module-globals-7.2.0" = { + "insert-module-globals-7.2.1" = { name = "insert-module-globals"; packageName = "insert-module-globals"; - version = "7.2.0"; + version = "7.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/insert-module-globals/-/insert-module-globals-7.2.0.tgz"; - sha512 = "VE6NlW+WGn2/AeOMd496AHFYmE7eLKkUY6Ty31k4og5vmA3Fjuwe9v6ifH6Xx/Hz27QvdoMoviw1/pqWRB09Sw=="; + url = "https://registry.npmjs.org/insert-module-globals/-/insert-module-globals-7.2.1.tgz"; + sha512 = "ufS5Qq9RZN+Bu899eA9QCAYThY+gGW7oRkmb0vC93Vlyu/CFGcH0OYPEjVkDXA5FEbTt1+VWzdoOD3Ny9N+8tg=="; }; }; "insight-0.10.3" = { @@ -25865,6 +26279,15 @@ let sha512 = "agE4QfB2Lkp9uICn7BAqoscw4SZP9kTE2hxiFI3jBPmXJfdqiahTbUuKGsMoN2GtqL9AxhYioAcVvgsb1HvRbA=="; }; }; + "interpret-2.2.0" = { + name = "interpret"; + packageName = "interpret"; + version = "2.2.0"; + src = fetchurl { + url = "https://registry.npmjs.org/interpret/-/interpret-2.2.0.tgz"; + sha512 = "Ju0Bz/cEia55xDwUWEa8+olFpCiQoypjnQySseKtmjNrnps3P+xfpUmGr90T7yjlVJmOtybRvPXhKMbHr+fWnw=="; + }; + }; "intersect-1.0.1" = { name = "intersect"; packageName = "intersect"; @@ -26531,6 +26954,15 @@ let sha512 = "lw7DUp0aWXYg+CBCN+JKkcE0Q2RayZnSvnZBlwgxHBQhqt5pZNVy4Ri7H9GmmXkdu7LUthszM+Tor1u/2iBcpQ=="; }; }; + "is-generator-function-1.0.7" = { + name = "is-generator-function"; + packageName = "is-generator-function"; + version = "1.0.7"; + src = fetchurl { + url = "https://registry.npmjs.org/is-generator-function/-/is-generator-function-1.0.7.tgz"; + sha512 = "YZc5EwyO4f2kWCax7oegfuSr9mFz1ZvieNYBEjmukLxgXfBUbxAWGVF7GZf0zidYtoBl3WvC07YK0wT76a+Rtw=="; + }; + }; "is-glob-2.0.1" = { name = "is-glob"; packageName = "is-glob"; @@ -26945,6 +27377,15 @@ let sha1 = "3334dc79774368e92f016e6fbc0a88f5cd6e6bc4"; }; }; + "is-potential-custom-element-name-1.0.0" = { + name = "is-potential-custom-element-name"; + packageName = "is-potential-custom-element-name"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/is-potential-custom-element-name/-/is-potential-custom-element-name-1.0.0.tgz"; + sha1 = "0c52e54bcca391bb2c494b21e8626d7336c6e397"; + }; + }; "is-primitive-2.0.0" = { name = "is-primitive"; packageName = "is-primitive"; @@ -27260,13 +27701,13 @@ let sha1 = "4b0da1442104d1b336340e80797e865cf39f7d72"; }; }; - "is-valid-domain-0.0.15" = { + "is-valid-domain-0.0.16" = { name = "is-valid-domain"; packageName = "is-valid-domain"; - version = "0.0.15"; + version = "0.0.16"; src = fetchurl { - url = "https://registry.npmjs.org/is-valid-domain/-/is-valid-domain-0.0.15.tgz"; - sha512 = "Mcq4a6oLR+ugNyUlZ8WbuJBCm6hB50B6bgZcr0z7qm4mjbmw+WuqLAxR0eV+jnmtRcSSd++21wD4aQJZb7YZZg=="; + url = "https://registry.npmjs.org/is-valid-domain/-/is-valid-domain-0.0.16.tgz"; + sha512 = "3IUxXDOLh9HBmfyHx9ySK4ZZuN8qU2Z1GPT2jNSmY/H7p8nhEXYX36WYpAQYAulupTgA5WnSYXWiWuLYp3Fw1Q=="; }; }; "is-valid-glob-1.0.0" = { @@ -27602,24 +28043,6 @@ let sha512 = "RKYVTCjAnRthyJes037NX/IiqeidgN1xc3j1RjFfECFp28A1GVwK9nA+i0rJPaHqSZwygLzRnFlzUuHFoWWy+Q=="; }; }; - "iterate-iterator-1.0.1" = { - name = "iterate-iterator"; - packageName = "iterate-iterator"; - version = "1.0.1"; - src = fetchurl { - url = "https://registry.npmjs.org/iterate-iterator/-/iterate-iterator-1.0.1.tgz"; - sha512 = "3Q6tudGN05kbkDQDI4CqjaBf4qf85w6W6GnuZDtUVYwKgtC1q8yxYX7CZed7N+tLzQqS6roujWvszf13T+n9aw=="; - }; - }; - "iterate-value-1.0.2" = { - name = "iterate-value"; - packageName = "iterate-value"; - version = "1.0.2"; - src = fetchurl { - url = "https://registry.npmjs.org/iterate-value/-/iterate-value-1.0.2.tgz"; - sha512 = "A6fMAio4D2ot2r/TYzr4yUWrmwNdsN5xL7+HUiyACE4DXm+q8HtPcnFTp+NnW3k4N05tZ7FVYFFb2CR13NxyHQ=="; - }; - }; "iterators-0.1.0" = { name = "iterators"; packageName = "iterators"; @@ -28016,6 +28439,15 @@ let sha1 = "102790f265d986fe95a4d0f2a792e7a7bd886eec"; }; }; + "js-yaml-3.6.1" = { + name = "js-yaml"; + packageName = "js-yaml"; + version = "3.6.1"; + src = fetchurl { + url = "https://registry.npmjs.org/js-yaml/-/js-yaml-3.6.1.tgz"; + sha1 = "6e5fe67d8b205ce4d22fad05b7781e8dadcc4b30"; + }; + }; "js2xmlparser-4.0.1" = { name = "js2xmlparser"; packageName = "js2xmlparser"; @@ -28043,6 +28475,15 @@ let sha1 = "b01307cb29b618a1ed26ec79e911f803c4da0040"; }; }; + "jschardet-1.6.0" = { + name = "jschardet"; + packageName = "jschardet"; + version = "1.6.0"; + src = fetchurl { + url = "https://registry.npmjs.org/jschardet/-/jschardet-1.6.0.tgz"; + sha512 = "xYuhvQ7I9PDJIGBWev9xm0+SMSed3ZDBAmvVjbFR1ZRLAF+vlXcQu6cRI9uAlj81rzikElRVteehwV7DuX2ZmQ=="; + }; + }; "jscodeshift-0.10.0" = { name = "jscodeshift"; packageName = "jscodeshift"; @@ -28088,6 +28529,15 @@ let sha512 = "fAl1W0/7T2G5vURSyxBzrJ1LSdQn6Tr5UX/xD4PXDx/PDgwygedfW6El/KIj3xJ7FU61TTYnc/l/B7P49Eqt6g=="; }; }; + "jsdom-16.4.0" = { + name = "jsdom"; + packageName = "jsdom"; + version = "16.4.0"; + src = fetchurl { + url = "https://registry.npmjs.org/jsdom/-/jsdom-16.4.0.tgz"; + sha512 = "lYMm3wYdgPhrl7pDcRmvzPhhrGVBeVhPIqeHjzeiHN3DFmD1RBpbExbi8vU7BJdH8VAZYovR8DMt0PNNDM7k8w=="; + }; + }; "jsdom-7.2.2" = { name = "jsdom"; packageName = "jsdom"; @@ -28818,6 +29268,15 @@ let sha1 = "83cb748496ac491c7135104cbe56b88ca7392477"; }; }; + "kafka-node-5.0.0" = { + name = "kafka-node"; + packageName = "kafka-node"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/kafka-node/-/kafka-node-5.0.0.tgz"; + sha512 = "dD2ga5gLcQhsq1yNoQdy1MU4x4z7YnXM5bcG9SdQuiNr5KKuAmXixH1Mggwdah5o7EfholFbcNDPSVA6BIfaug=="; + }; + }; "katex-0.12.0" = { name = "katex"; packageName = "katex"; @@ -29097,13 +29556,13 @@ let sha512 = "Ca4LSXFFZUjPScRaqOcFxneA0VpKZr4MMYCljyQr4LIewTLb3Y0IUTIsnBBsVubIeEfxeSZpSjSsRM8APEQaAw=="; }; }; - "lambda-local-1.7.3" = { + "lambda-local-1.7.4" = { name = "lambda-local"; packageName = "lambda-local"; - version = "1.7.3"; + version = "1.7.4"; src = fetchurl { - url = "https://registry.npmjs.org/lambda-local/-/lambda-local-1.7.3.tgz"; - sha512 = "T+iwIkuQT0JvTQhvNBTikLhpEJk3ovNoC33niE4QNmYOUrCOdo86PcPkgppOZl+NJXXHebdPHDJ40zqBJ9VMzg=="; + url = "https://registry.npmjs.org/lambda-local/-/lambda-local-1.7.4.tgz"; + sha512 = "uLrFPGj2//glOgJGLZn8hNTNlhU+eGx0WFRLZxIoC39nfjLRZ1fncHcPK2t5gA2GcvgtGUT2dnw60M8vJAOIkQ=="; }; }; "last-call-webpack-plugin-3.0.0" = { @@ -29142,6 +29601,15 @@ let sha1 = "ea47eb8f4b2bb0cf91716efaa896c2e16237587b"; }; }; + "latest-version-1.0.1" = { + name = "latest-version"; + packageName = "latest-version"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/latest-version/-/latest-version-1.0.1.tgz"; + sha1 = "72cfc46e3e8d1be651e1ebb54ea9f6ea96f374bb"; + }; + }; "latest-version-3.1.0" = { name = "latest-version"; packageName = "latest-version"; @@ -29547,15 +30015,6 @@ let sha512 = "qsda+H8jTaUaN/x5vzW2rzc+8Rw4TAQ/4KjB46IwK5VH+IlVeeeje/EoZRpiXvIqjFgK84QffqPztGI3VBLG1A=="; }; }; - "levenary-1.1.1" = { - name = "levenary"; - packageName = "levenary"; - version = "1.1.1"; - src = fetchurl { - url = "https://registry.npmjs.org/levenary/-/levenary-1.1.1.tgz"; - sha512 = "mkAdOIt79FD6irqjYSs4rdbnlT5vRonMEvBVPVb3XmevfS8kgRXwfes0dhPdEtzTWD/1eNE/Bm/G1iRt6DcnQQ=="; - }; - }; "levenshtein-1.0.5" = { name = "levenshtein"; packageName = "levenshtein"; @@ -29853,6 +30312,15 @@ let sha512 = "Jsmr89RcXGIwivFY21FcRrisYZfvLMTWx5kOLc+JTxtpBOG6xML0vzbc6SEQG2FO9/4Fc3wW4LVcB5DmGflaRw=="; }; }; + "loader-runner-4.1.0" = { + name = "loader-runner"; + packageName = "loader-runner"; + version = "4.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/loader-runner/-/loader-runner-4.1.0.tgz"; + sha512 = "oR4lB4WvwFoC70ocraKhn5nkKSs23t57h9udUgw8o0iH8hMXeEoRuUgfcvgUwAJ1ZpRqBvcou4N2SMvM1DwMrA=="; + }; + }; "loader-utils-1.2.3" = { name = "loader-utils"; packageName = "loader-utils"; @@ -30060,6 +30528,15 @@ let sha1 = "baf48934e543a1b5d6346f8c84698b1a8c803896"; }; }; + "lodash._arrayeach-3.0.0" = { + name = "lodash._arrayeach"; + packageName = "lodash._arrayeach"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/lodash._arrayeach/-/lodash._arrayeach-3.0.0.tgz"; + sha1 = "bab156b2a90d3f1bbd5c653403349e5e5933ef9e"; + }; + }; "lodash._arraypool-2.4.1" = { name = "lodash._arraypool"; packageName = "lodash._arraypool"; @@ -30132,6 +30609,15 @@ let sha1 = "4d31f2e7de7e134fbf2803762b8150b32519666f"; }; }; + "lodash._baseeach-3.0.4" = { + name = "lodash._baseeach"; + packageName = "lodash._baseeach"; + version = "3.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/lodash._baseeach/-/lodash._baseeach-3.0.4.tgz"; + sha1 = "cf8706572ca144e8d9d75227c990da982f932af3"; + }; + }; "lodash._baseiteratee-4.7.0" = { name = "lodash._baseiteratee"; packageName = "lodash._baseiteratee"; @@ -30456,6 +30942,15 @@ let sha1 = "ddb1bbb3ef07458c0177ba07de14422cb033ff9b"; }; }; + "lodash.defaults-3.1.2" = { + name = "lodash.defaults"; + packageName = "lodash.defaults"; + version = "3.1.2"; + src = fetchurl { + url = "https://registry.npmjs.org/lodash.defaults/-/lodash.defaults-3.1.2.tgz"; + sha1 = "c7308b18dbf8bc9372d701a73493c61192bd2e2c"; + }; + }; "lodash.defaults-4.2.0" = { name = "lodash.defaults"; packageName = "lodash.defaults"; @@ -30537,6 +31032,15 @@ let sha1 = "fe3fc3a34c86c94cab6f9522560282741e016309"; }; }; + "lodash.foreach-3.0.3" = { + name = "lodash.foreach"; + packageName = "lodash.foreach"; + version = "3.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/lodash.foreach/-/lodash.foreach-3.0.3.tgz"; + sha1 = "6fd7efb79691aecd67fdeac2761c98e701d6c39a"; + }; + }; "lodash.foreach-4.5.0" = { name = "lodash.foreach"; packageName = "lodash.foreach"; @@ -31266,6 +31770,15 @@ let sha1 = "2a7f8066ec3ab40bef28ca384842e75340183bf0"; }; }; + "long-1.1.2" = { + name = "long"; + packageName = 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packageName = "muxrpc"; - version = "6.5.0"; + version = "6.5.1"; src = fetchurl { - url = "https://registry.npmjs.org/muxrpc/-/muxrpc-6.5.0.tgz"; - sha512 = "8kCo33LTYPYWAJGi2Ag2ukcluoNqJIe6Ay9QtGf7EXAUlTuMSA0HqR7jCbXt7DQPR4Alu/T3/mOguuERpDMGcw=="; + url = "https://registry.npmjs.org/muxrpc/-/muxrpc-6.5.1.tgz"; + sha512 = "QTHNncZlsEcBOOYqpCx/QeVLJYaov6Y1LCEDun0xu81zAJGKymiMd5TB/qzA+dm9o1K3axwdGOqPR3fzrDyGRw=="; }; }; "muxrpc-usage-2.1.0" = { @@ -34263,6 +34776,15 @@ let sha512 = "isWHgVjnFjh2x2yuJ/tj3JbwoHu3UC2dX5G/88Cm24yB6YopVgxvBObDY7n5xW6ExmFhJpSEQqFPvq9zaXc8Jw=="; }; }; + "nan-2.14.2" = { + name = "nan"; + packageName = "nan"; + version = "2.14.2"; + src = fetchurl { + url = "https://registry.npmjs.org/nan/-/nan-2.14.2.tgz"; + sha512 = "M2ufzIiINKCuDfBSAUr1vWQ+vuVcA9kqx8JJUsbQi6yf1uGRyb7HfpdfUr5qLXf3B/t8dPvcjhKMmlfnP47EzQ=="; + }; + }; "nan-2.3.5" = { name = "nan"; packageName = "nan"; @@ -34317,6 +34839,15 @@ let sha512 = 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}; "node-gyp-build-3.7.0" = { @@ -35291,13 +35831,13 @@ let sha512 = "j1g/VtSCI2tBrBnCD+u8iSo9tH0nvn70k1O1SxkHk3+qx7tHUyOKQc7wNc4rUs9J1PkGngUC3qEDd5cL7Z/klg=="; }; }; - "node-releases-1.1.61" = { + "node-releases-1.1.63" = { name = "node-releases"; packageName = "node-releases"; - version = "1.1.61"; + version = "1.1.63"; src = fetchurl { - url = "https://registry.npmjs.org/node-releases/-/node-releases-1.1.61.tgz"; - sha512 = "DD5vebQLg8jLCOzwupn954fbIiZht05DAZs0k2u8NStSe6h9XdsuIQL8hSRKYiU8WUQRznmSDrKGbv3ObOmC7g=="; + url = "https://registry.npmjs.org/node-releases/-/node-releases-1.1.63.tgz"; + sha512 = "ukW3iCfQaoxJkSPN+iK7KznTeqDGVJatAEuXsJERYHa9tn/KaT5lBdIyxQjLEVTzSkyjJEuQ17/vaEjrOauDkg=="; }; }; "node-source-walk-4.2.0" = { @@ -35507,15 +36047,6 @@ let sha512 = "Tbj67rffqceeLpcRXrT7vKAN8CwfPeIBgM7E6iBkmKLV7bEMwpGgYLGv0jACUsECaa/vuxP0IjEont6umdMgtQ=="; }; }; - "normalize-html-whitespace-1.0.0" = { - name = "normalize-html-whitespace"; - packageName = "normalize-html-whitespace"; - 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"react-dom-16.14.0" = { name = "react-dom"; packageName = "react-dom"; - version = "16.13.1"; + version = "16.14.0"; src = fetchurl { - url = "https://registry.npmjs.org/react-dom/-/react-dom-16.13.1.tgz"; - sha512 = "81PIMmVLnCNLO/fFOQxdQkvEq/+Hfpv24XNJfpyZhTRfO0QcmQIF/PgCa1zCOj2w1hrn12MFLyaJ/G0+Mxtfag=="; + url = "https://registry.npmjs.org/react-dom/-/react-dom-16.14.0.tgz"; + sha512 = "1gCeQXDLoIqMgqD3IO2Ah9bnf0w9kzhwN5q4FGnHZ67hBm9yePzB5JJAIQCc8x3pFnNlwFq4RidZggNAAkzWWw=="; }; }; "react-dropdown-1.9.0" = { @@ -42313,6 +42925,15 @@ let sha1 = "b3da19bd052431a97671d44a42634adf710b40c4"; }; }; + "read-all-stream-3.1.0" = { + name = "read-all-stream"; + packageName = "read-all-stream"; + version = "3.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/read-all-stream/-/read-all-stream-3.1.0.tgz"; + sha1 = "35c3e177f2078ef789ee4bfafa4373074eaef4fa"; + }; + }; "read-cache-1.0.0" = { name = "read-cache"; packageName = "read-cache"; @@ -42601,6 +43222,15 @@ let sha512 = 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name = "redux"; packageName = "redux"; @@ -43267,13 +43915,13 @@ let sha512 = "Gyk9CYWqGmG2W83ZfQnK8ZGZbmKkrxnHHHiWxF32vH5Afd19IIPZFZADtlmeXVA2petJgCB9L1EbPUc6dS8jDg=="; }; }; - "renderkid-2.0.3" = { + "renderkid-2.0.4" = { name = "renderkid"; packageName = "renderkid"; - version = "2.0.3"; + version = "2.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/renderkid/-/renderkid-2.0.3.tgz"; - sha512 = "z8CLQp7EZBPCwCnncgf9C4XAi3WR0dv+uWu/PjIyhhAb5d6IJ/QZqlHFprHeKT+59//V6BNUsLbvN8+2LarxGA=="; + url = "https://registry.npmjs.org/renderkid/-/renderkid-2.0.4.tgz"; + sha512 = "K2eXrSOJdq+HuKzlcjOlGoOarUu5SDguDEhE7+Ah4zuOWL40j8A/oHvLlLob9PSTNvVnBd+/q0Er1QfpEuem5g=="; }; }; "repeat-element-1.1.3" = { @@ -43294,6 +43942,15 @@ let sha1 = "8dcae470e1c88abc2d600fff4a776286da75e637"; }; }; + "repeating-1.1.3" = { + name = "repeating"; + packageName = "repeating"; + version = "1.1.3"; + src = fetchurl { + url = "https://registry.npmjs.org/repeating/-/repeating-1.1.3.tgz"; + sha1 = 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let sha1 = "56eb027d65b4d2dce6cb2e2d32c4d4afc9e1d707"; }; }; - "slug-3.3.5" = { + "slug-3.5.1" = { name = "slug"; packageName = "slug"; - version = "3.3.5"; + version = "3.5.1"; src = fetchurl { - url = "https://registry.npmjs.org/slug/-/slug-3.3.5.tgz"; - sha512 = "d/9yTbJDtSIhJThaNRP/U5uxwCl0mWIlV42JmKSfvg8t7DiVt69G8rAWTc0FWhaQOier0fiNAWVs7ctvVhK1RA=="; + url = "https://registry.npmjs.org/slug/-/slug-3.5.1.tgz"; + sha512 = "ei0JnJzg8HKhLunZy+vpNlILRRradfaAQ+p2YEI4b4r8yX/5TlFi1JSwcYQCg7INZxdTC43BT68rHMkRxzn7Xg=="; }; }; "slugid-1.1.0" = { @@ -45985,6 +46669,15 @@ let sha512 = "mbKkMdQKsjX4BAL4bRYTj21edOf8cN7XHdYUJEe+Zn99hVEYcMvKPct1IqNe7+AZPirn8BCDOQBHQZknqmKlZQ=="; }; }; + "snappy-6.3.5" = { + name = "snappy"; + packageName = "snappy"; + version = "6.3.5"; + src = fetchurl { + url = "https://registry.npmjs.org/snappy/-/snappy-6.3.5.tgz"; + sha512 = "lonrUtdp1b1uDn1dbwgQbBsb5BbaiLeKq+AGwOk2No+en+VvJThwmtztwulEQsLinRF681pBqib0NUZaizKLIA=="; + }; + }; "snapsvg-0.5.1" = { name = "snapsvg"; packageName = "snapsvg"; @@ -46030,13 +46723,13 @@ let sha512 = "/xcDy8H5wxhk+4E9e8zDDGfcNo5g+zpwy585sCDkH5KpHdZHmguPi0GmZ9ZCBTuGIodeTIqsDqkBiA1WXSH7+w=="; }; }; - "snyk-docker-plugin-3.26.2" = { + "snyk-docker-plugin-4.1.1" = { name = "snyk-docker-plugin"; packageName = "snyk-docker-plugin"; - version = "3.26.2"; + version = "4.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/snyk-docker-plugin/-/snyk-docker-plugin-3.26.2.tgz"; - sha512 = "66t+KkAbaHcJJUDUXj5TBeiFkId9SfdChrsYiI7srRLWNU3PG20V3JrjNx7hjEqJpCJCsucnUjTwouZWg39eUg=="; + url = "https://registry.npmjs.org/snyk-docker-plugin/-/snyk-docker-plugin-4.1.1.tgz"; + sha512 = "2N8um3cU+qWAVut0Pm/jTM1Hcjyk4kQLKd5nX/Fl/DOhxi62pVpIQ6qGE2LKxYTShEpeC0YS70D9J4ke7ra8Dw=="; }; }; "snyk-go-parser-1.4.1" = { @@ -46057,13 +46750,13 @@ let sha512 = "FAM56z3bl1iuxeqkCEA/jyZ2hpwkQK8xQxQbhR+QppEK5lole7w1PQyWYgZAJ9oRY/BU32zdRAJwGuZbhk7G2Q=="; }; }; - "snyk-gradle-plugin-3.9.0" = { + "snyk-gradle-plugin-3.10.0" = { name = "snyk-gradle-plugin"; packageName = "snyk-gradle-plugin"; - version = "3.9.0"; + version = "3.10.0"; src = fetchurl { - url = "https://registry.npmjs.org/snyk-gradle-plugin/-/snyk-gradle-plugin-3.9.0.tgz"; - sha512 = "oux2M/GhnfyZW3ngs3BO/uKlZTVLErGBY83j6ctGti3d54Ax8GZvS6iHjXd3FNrTd+9o5mfFzZyUHq/ujiakMw=="; + url = "https://registry.npmjs.org/snyk-gradle-plugin/-/snyk-gradle-plugin-3.10.0.tgz"; + sha512 = "G33nwUIVALII7mHqKuIxLh1Qj2qsOFd6vbnu4d6lPISVCH9TRBTvirPaVnybWgrO2TWvzZ+jXsZHhG++8kLpXQ=="; }; }; "snyk-module-1.9.1" = { @@ -46093,13 +46786,13 @@ let sha512 = "HHuOYEAACpUpkFgU8HT57mmxmonaJ4O3YADoSkVhnhkmJ+AowqZyJOau703dYHNrq2DvQ7qYw81H7yyxS1Nfjw=="; }; }; - "snyk-mvn-plugin-2.22.0" = { + "snyk-mvn-plugin-2.23.0" = { name = "snyk-mvn-plugin"; packageName = "snyk-mvn-plugin"; - version = "2.22.0"; + version = "2.23.0"; src = fetchurl { - url = "https://registry.npmjs.org/snyk-mvn-plugin/-/snyk-mvn-plugin-2.22.0.tgz"; - sha512 = 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"ssb-links"; - version = "3.0.9"; + version = "3.0.10"; src = fetchurl { - url = "https://registry.npmjs.org/ssb-links/-/ssb-links-3.0.9.tgz"; - sha512 = "jb1wqknz+AMqD9CxpjfDhII5Vz5JRVY9MakTrgKCrBFqLIPhqHq9bScei0zY0IBWjpSflI0juqOhpki38pWBHA=="; + url = "https://registry.npmjs.org/ssb-links/-/ssb-links-3.0.10.tgz"; + sha512 = "p6rH5dcwebRnwGRBfBpkOV49ZLLApGX+hppHwJtBsWKTXIKZFu4+9pGuRHmC1UNa+B5A2wELjo4Ru1AMQdYGwA=="; }; }; "ssb-local-1.0.0" = { @@ -47722,6 +48424,15 @@ let sha512 = "nX6hmklHs/gr2FuxYDltq8fJA1GDlxKQCz8O/IM4atRqBH8OORmBNgfvW5gG10GT/qQ9u0CzIvr2X5Pkt6ntqg=="; }; }; + "stream-browserify-3.0.0" = { + name = "stream-browserify"; + packageName = "stream-browserify"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/stream-browserify/-/stream-browserify-3.0.0.tgz"; + sha512 = "H73RAHsVBapbim0tU2JwwOiXUj+fikfiaoYAKHF3VJfA0pe2BCzkhAHBlLG6REzE+2WNZcxOXjK7lkso+9euLA=="; + }; + }; "stream-buffers-2.2.0" = { name = "stream-buffers"; packageName = "stream-buffers"; @@ -47956,6 +48667,15 @@ let sha1 = "279b225df1d582b1f54e65addd4352e18faa0713"; }; }; + "strict-uri-encode-2.0.0" = { + name = "strict-uri-encode"; + packageName = "strict-uri-encode"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/strict-uri-encode/-/strict-uri-encode-2.0.0.tgz"; + sha1 = "b9c7330c7042862f6b142dc274bbcc5866ce3546"; + }; + }; "string-1.6.1" = { name = "string"; packageName = "string"; @@ -48010,6 +48730,15 @@ let sha512 = "lJyXXoptFpgOXL9cWZXtf45jxdbP5qYtaGZsmtFm4CZy9q6wwzvRzQcJiFeLx8I/0RpzBao9WCOGpbyfW2CMWA=="; }; }; + "string-length-1.0.1" = { + name = "string-length"; + packageName = "string-length"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/string-length/-/string-length-1.0.1.tgz"; + sha1 = "56970fb1c38558e9e70b728bf3de269ac45adfac"; + }; + }; "string-length-2.0.0" = { name = "string-length"; packageName = "string-length"; @@ -48190,13 +48919,13 @@ let sha512 = 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"https://registry.npmjs.org/strip-json-comments/-/strip-json-comments-3.0.1.tgz"; - sha512 = "VTyMAUfdm047mwKl+u79WIdrZxtFtn+nBxHeb844XBQ9uMNTuTHdx2hc5RiAJYqwTj3wc/xe5HLSdJSkJ+WfZw=="; - }; - }; "strip-json-comments-3.1.0" = { name = "strip-json-comments"; packageName = "strip-json-comments"; @@ -48766,13 +49486,13 @@ let sha512 = "FT3QLMasz0YyCd4uIi5HNe+3t/onxMyEho7C3PSqmti3Twgy2rXT4fmkTz6wRL6bTF4uzPcfkUCa8u4JWHw8Ag=="; }; }; - "superagent-proxy-2.0.0" = { + "superagent-proxy-2.1.0" = { name = "superagent-proxy"; packageName = "superagent-proxy"; - version = "2.0.0"; + version = "2.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/superagent-proxy/-/superagent-proxy-2.0.0.tgz"; - sha512 = "TktJma5jPdiH1BNN+reF/RMW3b8aBTCV7KlLFV0uYcREgNf3pvo7Rdt564OcFHwkGb3mYEhHuWPBhSbOwiNaYw=="; + url = "https://registry.npmjs.org/superagent-proxy/-/superagent-proxy-2.1.0.tgz"; + sha512 = "DnarpKN6Xn8e3pYlFV4Yvsj9yxLY4q5FIsUe5JvN7vjzP+YCfzXv03dTkZSD2yzrSadsNYHf0IgOUJwKjX457A=="; }; }; "supports-color-0.2.0" = { @@ -48847,15 +49567,6 @@ let sha512 = "qe1jfm1Mg7Nq/NSh6XE24gPXROEVsWHxC1LIx//XNlD9iw7YZQGjZNjYN7xGaEG6iKdA8EtNFW6R0gjnVXp+wQ=="; }; }; - "supports-color-7.1.0" = { - name = "supports-color"; - packageName = "supports-color"; - version = "7.1.0"; - src = fetchurl { - url = "https://registry.npmjs.org/supports-color/-/supports-color-7.1.0.tgz"; - sha512 = "oRSIpR8pxT1Wr2FquTNnGet79b3BWljqOuoW/h4oBhxJ/HUbX5nX6JSruTkvXDCFMwDPvsaTTbvMLKZWSy0R5g=="; - }; - }; "supports-color-7.2.0" = { name = "supports-color"; packageName = "supports-color"; @@ -48901,6 +49612,15 @@ let sha1 = "58f71cee3bd519b59d4b2a843b6c7de64ac04764"; }; }; + "svgo-0.6.6" = { + name = "svgo"; + packageName = "svgo"; + version = "0.6.6"; + src = fetchurl { + url = "https://registry.npmjs.org/svgo/-/svgo-0.6.6.tgz"; + sha1 = "b340889036f20f9b447543077d0f5573ed044c08"; + }; + }; "svgo-1.3.2" = { name = "svgo"; packageName = "svgo"; @@ -49000,13 +49720,13 @@ let sha512 = "hAu/ig5N8i0trXXbrC7rwbXV4DhpEAsZhYXDs1305OjmDgjGC0thINbb0197idy3Pp+B6w7u426SUM43GAP7qw=="; }; }; - "swagger-ui-dist-3.35.0" = { + "swagger-ui-dist-3.35.2" = { name = "swagger-ui-dist"; packageName = "swagger-ui-dist"; - version = "3.35.0"; + version = "3.35.2"; src = fetchurl { - url = "https://registry.npmjs.org/swagger-ui-dist/-/swagger-ui-dist-3.35.0.tgz"; - sha512 = "VdjOd7Lpj3LU6V/SG9BHZHTJ5cTk+uoyHBrGAeEP70SYf7GflLYqw7USUNxoraEx72vIA1wqogMv4GiRqMr8lA=="; + url = "https://registry.npmjs.org/swagger-ui-dist/-/swagger-ui-dist-3.35.2.tgz"; + sha512 = "19oRW6ZVCTY7JnaMFnIUoxkqI+xhBOGzSFVQTMLDB9KTNASP82v/0SkNpY2T4zbjwZF2Y5bcty9E6rhLGAj0Gg=="; }; }; "swagger2openapi-5.4.0" = { @@ -49018,13 +49738,13 @@ let sha512 = "f5QqfXawiVijhjMtYqWZ55ESHPZFqrPC8L9idhIiuSX8O2qsa1i4MVGtCM3TQF+Smzr/6WfT/7zBuzG3aTgPAA=="; }; }; - "swagger2openapi-7.0.2" = { + "swagger2openapi-7.0.3" = { name = "swagger2openapi"; packageName = "swagger2openapi"; - version = "7.0.2"; + version = "7.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/swagger2openapi/-/swagger2openapi-7.0.2.tgz"; - sha512 = "EG9h+hq+mX4S6mh0IHf/K4Bd8cLFVvRFxt6YiuoQCKycbCoa8Cjr8hbzy1oDNpGYwjT29js/PrHffgJDuDlgQw=="; + url = "https://registry.npmjs.org/swagger2openapi/-/swagger2openapi-7.0.3.tgz"; + sha512 = "JSFUmXSR7Qx9WwSKCEqaL4oQfhLLCU2r8Zgf30g15FdSkihItZ6fKFnqSsfqQ6MsmnLlcBf8+OhnQHbi1R0ydg=="; }; }; "sway-1.0.0" = { @@ -49081,6 +49801,15 @@ let sha512 = "e900nM8RRtGhlV36KGEU9k65K3mPb1WV70OdjfxlG2EAuM1noi/E/BaW/uMhL7bPEssK8QV57vN3esixjUvcXQ=="; }; }; + "symbol-observable-2.0.3" = { + name = "symbol-observable"; + packageName = "symbol-observable"; + version = "2.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/symbol-observable/-/symbol-observable-2.0.3.tgz"; + sha512 = "sQV7phh2WCYAn81oAkakC5qjq2Ml0g8ozqz03wOGnx9dDlG1de6yrF+0RAzSJD8fPUow3PTSMf2SAbOGxb93BA=="; + }; + }; "symbol-tree-3.2.4" = { name = "symbol-tree"; packageName = "symbol-tree"; @@ -49099,13 +49828,13 @@ let sha512 = "YPPlu67mdnHGTup2A8ff7BC2Pjq0e0Yp/IyTFN03zWO0RcK07uLcbi7C2KpGR2FvWbaB0+bfE27a+sBKebSo7w=="; }; }; - "systeminformation-4.27.7" = { + "systeminformation-4.27.10" = { name = "systeminformation"; packageName = "systeminformation"; - version = "4.27.7"; + version = "4.27.10"; src = fetchurl { - url = "https://registry.npmjs.org/systeminformation/-/systeminformation-4.27.7.tgz"; - sha512 = "3ozUwGSf5jmrhGgOXlX/O6hk1KQ28XPb7d3NiPZX267QmimuDq3TuIgnkw+vICUrGJGKWPLKmXVASnuJ3w07nw=="; + url = "https://registry.npmjs.org/systeminformation/-/systeminformation-4.27.10.tgz"; + sha512 = "qXuJaa+3A1bLkFNr/rn3H9Uw8UGodSbq+1QjxDbXua9iexfw4UIdAZZTyu9kE5OkXG1Lt6u0z4aZfxYRVL68EA=="; }; }; "syswide-cas-5.3.0" = { @@ -49171,6 +49900,15 @@ let sha512 = "zTvf0mcggrGeTe/2jJ6ECkJHAQPIYEwDoqsiqBjI24mvRmQbInK5jq33fyypaCBxX08hMkfmdOqj6haT33EqWw=="; }; }; + "table-layout-1.0.1" = { + name = "table-layout"; + packageName = "table-layout"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/table-layout/-/table-layout-1.0.1.tgz"; + sha512 = "dEquqYNJiGwY7iPfZ3wbXDI944iqanTSchrACLL2nOB+1r+h1Nzu2eH+DuPPvWvm5Ry7iAPeFlgEtP5bIp5U7Q=="; + }; + }; "tabtab-1.3.2" = { name = "tabtab"; packageName = "tabtab"; @@ -49253,6 +49991,15 @@ let sha512 = "4WK/bYZmj8xLr+HUCODHGF1ZFzsYffasLUgEiMBY4fgtltdO6B4WJtlSbPaDTLpYTcGVwM2qLnFTICEcNxs3kA=="; }; }; + "tapable-2.0.0" = { + name = "tapable"; + packageName = "tapable"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/tapable/-/tapable-2.0.0.tgz"; + sha512 = "bjzn0C0RWoffnNdTzNi7rNDhs1Zlwk2tRXgk8EiHKAOX1Mag3d6T0Y5zNa7l9CJ+EoUne/0UHdwS8tMbkh9zDg=="; + }; + }; "tape-2.3.3" = { name = "tape"; packageName = "tape"; @@ -49325,6 +50072,15 @@ let sha512 = "0b4HOimQHj9nXNEAA7zWwMM91Zhhba3pspja6sQbgTpynOJf+bkjBnfybNYzbpLbnwXnbyB4LOREvlyXLkCHSg=="; }; }; + "tar-fs-1.16.3" = { + name = "tar-fs"; + packageName = "tar-fs"; + version = "1.16.3"; + src = fetchurl { + url = "https://registry.npmjs.org/tar-fs/-/tar-fs-1.16.3.tgz"; + sha512 = "NvCeXpYx7OsmOh8zIOP/ebG55zZmxLE0etfWRbWok+q2Qo8x/vOR/IJT1taADXPe+jsiu9axDb3X4B+iIgNlKw=="; + }; + }; "tar-fs-2.1.0" = { name = "tar-fs"; packageName = "tar-fs"; @@ -49541,13 +50297,13 @@ let sha512 = "a6sumDlzyHVJWb8+YofY4TW112G6p2FCPEAFk+59gIYHv3XHRhm9ltVQ9kli4hNWeQBwSpe8cRN25x0ROunMOw=="; }; }; - "terminal-kit-1.43.0" = { + "terminal-kit-1.44.0" = { name = "terminal-kit"; packageName = "terminal-kit"; - version = "1.43.0"; + version = "1.44.0"; src = fetchurl { - url = "https://registry.npmjs.org/terminal-kit/-/terminal-kit-1.43.0.tgz"; - sha512 = "OuPvQzx6oxr3oE2Y78NgRy0TetmurGa/vshYV02Kd6XDWctHO/sHpjnLe3Jhi8FrUkL0XAZMGlxjLeDtRFL4wg=="; + url = "https://registry.npmjs.org/terminal-kit/-/terminal-kit-1.44.0.tgz"; + sha512 = "f9RLSA1a1ahx/40NwQ1FoGWz/el7no9RiGX4wMUirmqxJZjwZ09pMZWFWzlHb1yIfk9SnfRD9esGfofu5fF35A=="; }; }; "terminal-link-2.1.1" = { @@ -49577,13 +50333,13 @@ let sha512 = "EAPipTNeWsb/3wLPeup1tVPaXfIaU68xMnVdPafIL1TV05OhASArYyIfFvnvJCNrR2NIOvDVNNTFRa+Re2MWyw=="; }; }; - "terser-5.3.4" = { + "terser-5.3.6" = { name = "terser"; packageName = "terser"; - version = "5.3.4"; + version = "5.3.6"; src = fetchurl { - url = "https://registry.npmjs.org/terser/-/terser-5.3.4.tgz"; - sha512 = "dxuB8KQo8Gt6OVOeLg/rxfcxdNZI/V1G6ze1czFUzPeCFWZRtvZMgSzlZZ5OYBZ4HoG607F6pFPNLekJyV+yVw=="; + url = "https://registry.npmjs.org/terser/-/terser-5.3.6.tgz"; + sha512 = "145ap5v1HYx69HfLuwWaxTIlXyiSr+nSTb7ZWlJCgJn2JptuJRKziNa/zwFx9B1IU99Q055jHni74nLuuEC78w=="; }; }; "terser-webpack-plugin-1.4.5" = { @@ -49613,6 +50369,15 @@ let sha512 = "cjdZte66fYkZ65rQ2oJfrdCAkkhJA7YLYk5eGOcGCSGlq0ieZupRdjedSQXYknMPo2IveQL+tPdrxUkERENCFA=="; }; }; + "terser-webpack-plugin-5.0.0" = { + name = "terser-webpack-plugin"; + packageName = "terser-webpack-plugin"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/terser-webpack-plugin/-/terser-webpack-plugin-5.0.0.tgz"; + sha512 = "rf7l5a9xamIVX3enQeTl0MY2MNeZClo5yPX/tVPy22oY0nzu0b45h7JqyFi/bygqKWtzXMnml0u12mArhQPsBQ=="; + }; + }; "test-exclude-6.0.0" = { name = "test-exclude"; packageName = "test-exclude"; @@ -49928,6 +50693,15 @@ let sha1 = "99c5bf55958966af6d06d83bdf3800dc82faec5d"; }; }; + "timed-out-2.0.0" = { + name = "timed-out"; + packageName = "timed-out"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/timed-out/-/timed-out-2.0.0.tgz"; + sha1 = "f38b0ae81d3747d628001f41dafc652ace671c0a"; + }; + }; "timed-out-4.0.1" = { name = "timed-out"; packageName = "timed-out"; @@ -50846,13 +51620,13 @@ let sha512 = "aZW88SY8kQbU7gpV19lN24LtXh/yD4ZZg6qieAJDDg+YBsJcSmLGK9QpnUjAKVG/xefmvJGd1WUmfpT/g6AJGA=="; }; }; - "tslib-1.14.0" = { + "tslib-1.14.1" = { name = "tslib"; packageName = "tslib"; - version = "1.14.0"; + version = "1.14.1"; src = fetchurl { - url = "https://registry.npmjs.org/tslib/-/tslib-1.14.0.tgz"; - sha512 = 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"https://registry.npmjs.org/typical/-/typical-5.2.0.tgz"; + sha512 = "dvdQgNDNJo+8B2uBQoqdb11eUCE1JQXhvjC/CZtgvZseVd5TYMXnq0+vuUemXbd/Se29cTaUuPX3YIc2xgbvIg=="; + }; + }; "typo-geom-0.8.4" = { name = "typo-geom"; packageName = "typo-geom"; @@ -51386,22 +52178,22 @@ let sha1 = "29c5733148057bb4e1f75df35b7a9cb72e6a59dd"; }; }; - "uglify-js-3.10.0" = { + "uglify-js-3.11.2" = { name = "uglify-js"; packageName = "uglify-js"; - version = "3.10.0"; + version = "3.11.2"; src = fetchurl { - url = "https://registry.npmjs.org/uglify-js/-/uglify-js-3.10.0.tgz"; - sha512 = "Esj5HG5WAyrLIdYU74Z3JdG2PxdIusvj6IWHMtlyESxc7kcDz7zYlYjpnSokn1UbpV0d/QX9fan7gkCNd/9BQA=="; + url = "https://registry.npmjs.org/uglify-js/-/uglify-js-3.11.2.tgz"; + sha512 = "G440NU6fewtnQftSgqRV1r2A5ChKbU1gqFCJ7I8S7MPpY/eZZfLGefaY6gUZYiWebMaO+txgiQ1ZyLDuNWJulg=="; }; }; - "uglify-js-3.11.1" = { + "uglify-js-3.11.3" = { name = "uglify-js"; packageName = "uglify-js"; - version = "3.11.1"; + version = "3.11.3"; src = fetchurl { - url = "https://registry.npmjs.org/uglify-js/-/uglify-js-3.11.1.tgz"; - sha512 = "OApPSuJcxcnewwjSGGfWOjx3oix5XpmrK9Z2j0fTRlHGoZ49IU6kExfZTM0++fCArOOCet+vIfWwFHbvWqwp6g=="; + url = "https://registry.npmjs.org/uglify-js/-/uglify-js-3.11.3.tgz"; + sha512 = "wDRziHG94mNj2n3R864CvYw/+pc9y/RNImiTyrrf8BzgWn75JgFSwYvXrtZQMnMnOp/4UTrf3iCSQxSStPiByA=="; }; }; "uglify-js-3.4.10" = { @@ -52016,6 +52808,15 @@ let sha512 = "TOA6W9QLil+BrHqIZNR4o6IA5QwGOveMbnQxnWYq+7EFORx9vz/CHrtzF36zWrW61E2UKw7sM1KPtIgeceVwXw=="; }; }; + "unist-util-modify-children-2.0.0" = { + name = "unist-util-modify-children"; + packageName = "unist-util-modify-children"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/unist-util-modify-children/-/unist-util-modify-children-2.0.0.tgz"; + sha512 = "HGrj7JQo9DwZt8XFsX8UD4gGqOsIlCih9opG6Y+N11XqkBGKzHo8cvDi+MfQQgiZ7zXRUiQREYHhjOBHERTMdg=="; + }; + }; "unist-util-position-3.1.0" = { name = "unist-util-position"; packageName = "unist-util-position"; @@ -52097,13 +52898,13 @@ let sha512 = "DyN5vD4NE3aSeB+PXYNKxzGsfocxp6asDc2XXE3b0ekO2BaRUpBicbbUygfSvYfUz1IkmjFR1YF7dPklraMZ2g=="; }; }; - "unist-util-visit-parents-3.1.0" = { + "unist-util-visit-parents-3.1.1" = { name = "unist-util-visit-parents"; packageName = "unist-util-visit-parents"; - version = "3.1.0"; + version = "3.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/unist-util-visit-parents/-/unist-util-visit-parents-3.1.0.tgz"; - sha512 = "0g4wbluTF93npyPrp/ymd3tCDTMnP0yo2akFD2FIBAYXq/Sga3lwaU1D8OYKbtpioaI6CkDcQ6fsMnmtzt7htw=="; + url = "https://registry.npmjs.org/unist-util-visit-parents/-/unist-util-visit-parents-3.1.1.tgz"; + sha512 = "1KROIZWo6bcMrZEwiH2UrXDyalAa0uqzWCxCJj6lPOvTve2WkfgCytoDTPaMnodXh1WrXOq0haVYHj99ynJlsg=="; }; }; "universal-analytics-0.4.23" = { @@ -52115,6 +52916,15 @@ let sha512 = "lgMIH7XBI6OgYn1woDEmxhGdj8yDefMKg7GkWdeATAlQZFrMrNyxSkpDzY57iY0/6fdlzTbBV03OawvvzG+q7A=="; }; }; + "universal-url-2.0.0" = { + name = "universal-url"; + packageName = "universal-url"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/universal-url/-/universal-url-2.0.0.tgz"; + sha512 = "3DLtXdm/G1LQMCnPj+Aw7uDoleQttNHp2g5FnNQKR6cP6taNWS1b/Ehjjx4PVyvejKi3TJyu8iBraKM4q3JQPg=="; + }; + }; "universal-user-agent-4.0.1" = { name = "universal-user-agent"; packageName = "universal-user-agent"; @@ -52331,6 +53141,15 @@ let sha512 = "6KLU4/dd0Tg/l0xwL+f9V7kEIPSL1vOIbnNnhSLiRDlj4AVG6Ks9Zoc9Jgt9kIgWFPZ/wp2AHgmG7xNf15TJOA=="; }; }; + "update-notifier-0.5.0" = { + name = "update-notifier"; + packageName = "update-notifier"; + version = "0.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/update-notifier/-/update-notifier-0.5.0.tgz"; + sha1 = "07b5dc2066b3627ab3b4f530130f7eddda07a4cc"; + }; + }; "update-notifier-2.5.0" = { name = "update-notifier"; packageName = "update-notifier"; @@ -52520,13 +53339,13 @@ let sha512 = "jk1+QP6ZJqyOiuEI9AEWQfju/nB2Pw466kbA0LEZljHwKeMgd9WrAEgEGxjPDD2+TNbbb37rTyhEfrCXfuKXnA=="; }; }; - "url-loader-4.1.0" = { + "url-loader-4.1.1" = { name = "url-loader"; packageName = "url-loader"; - version = "4.1.0"; + version = "4.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/url-loader/-/url-loader-4.1.0.tgz"; - sha512 = "IzgAAIC8wRrg6NYkFIJY09vtktQcsvU8V6HhtQj9PTefbYImzLB1hufqo4m+RyM5N3mLx5BqJKccgxJS+W3kqw=="; + url = "https://registry.npmjs.org/url-loader/-/url-loader-4.1.1.tgz"; + sha512 = "3BTV812+AVHHOJQO8O5MkWgZ5aosP7GnROJwvzLS9hWDj00lZ6Z0wNak423Lp9PBZN05N+Jk/N5Si8jRAlGyWA=="; }; }; "url-parse-1.4.7" = { @@ -52565,13 +53384,13 @@ let sha1 = "1505a03a289a48cbd7a434efbaeec5055f5633a9"; }; }; - "url-toolkit-2.2.0" = { + "url-toolkit-2.2.1" = { name = "url-toolkit"; packageName = "url-toolkit"; - version = "2.2.0"; + version = "2.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/url-toolkit/-/url-toolkit-2.2.0.tgz"; - sha512 = "Rde0c9S4fJK3FaHim3DSgdQ8IFrSXcZCpAJo9T7/FA+BoQGhK0ow3mpwGQLJCPYsNn6TstpW7/7DzMpSpz9F9w=="; + url = "https://registry.npmjs.org/url-toolkit/-/url-toolkit-2.2.1.tgz"; + sha512 = "8+DzgrtDZYZGhHaAop5WGVghMdCfOLGbhcArsJD0qDll71FXa7EeKxi2hilPIscn2nwMz4PRjML32Sz4JTN0Xw=="; }; }; "urlencode-1.1.0" = { @@ -52619,13 +53438,13 @@ let sha512 = "D98YM9dKGHzNFUuqLHLV1vXqbHNfyvTx/rADtvF9P6D1HYV/0JuArlpnQIHhOuWXQGUVyR5XJGRVLKbeNu0o5A=="; }; }; - "ut_pex-2.0.0" = { + "ut_pex-2.0.1" = { name = "ut_pex"; packageName = "ut_pex"; - version = "2.0.0"; + version = "2.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/ut_pex/-/ut_pex-2.0.0.tgz"; - sha512 = "Uc0IxXGlES1DfeG+ITUISAvCF4Uldj7tt/n7s3TBt0KyXqDViOO26X5WfwXtUpEwn8fyZyerzf/YOK4rIZ2S3Q=="; + url = "https://registry.npmjs.org/ut_pex/-/ut_pex-2.0.1.tgz"; + sha512 = "kI1/y1IhbuTqjyVqekSZCd3afPQTpdIRCrON1WXc9jGdcIAaze3FAoZ1ssYJmGBuJbdg7LQO42daJGCaoRXl+A=="; }; }; "utf-8-validate-1.2.2" = { @@ -52718,6 +53537,15 @@ let sha512 = "HShAsny+zS2TZfaXxD9tYj4HQGlBezXZMZuM/S5PKLLoZkShZiGk9o5CzukI1LVHZvjdvZ2Sj1aW/Ndn2NB/HQ=="; }; }; + "util-0.12.3" = { + name = "util"; + packageName = "util"; + version = "0.12.3"; + src = fetchurl { + url = "https://registry.npmjs.org/util/-/util-0.12.3.tgz"; + sha512 = "I8XkoQwE+fPQEhy9v012V+TSdH2kp9ts29i20TaaDUXsg7x/onePbhFJUExBfv/2ay1ZOp/Vsm3nDlmnFGSAog=="; + }; + }; "util-0.4.9" = { name = "util"; packageName = "util"; @@ -53348,15 +54176,6 @@ let sha512 = "OSyNYwMJ8FayTTNU/gohprbt1EFQBpoiMPP9p2vqo1O9z45XVnotQ92jYHAhraI6gWiMIIfo4OjPbSe/GX7etg=="; }; }; - "vega-util-1.15.3" = { - name = "vega-util"; - packageName = "vega-util"; - version = "1.15.3"; - src = fetchurl { - url = "https://registry.npmjs.org/vega-util/-/vega-util-1.15.3.tgz"; - sha512 = "NCbfCPMVgdP4geLrFtCDN9PTEXrgZgJBBLvpyos7HGv2xSe9bGjDCysv6qcueHrc1myEeCQzrHDFaShny6wXDg=="; - }; - }; "vega-util-1.16.0" = { name = "vega-util"; packageName = "vega-util"; @@ -53780,13 +54599,13 @@ let sha512 = "b2b+0oHvPmBHygDtOXX3xBvpQCa6eIQSvXnGDNSDmIC1894ZTJ2yX10vjplOO/PvV7mwhyvGPwHyY4X2HGxtKw=="; }; }; - "vscode-css-languageservice-4.3.4" = { + "vscode-css-languageservice-4.3.5" = { name = "vscode-css-languageservice"; packageName = "vscode-css-languageservice"; - version = "4.3.4"; + version = "4.3.5"; src = fetchurl { - url = "https://registry.npmjs.org/vscode-css-languageservice/-/vscode-css-languageservice-4.3.4.tgz"; - sha512 = "/0HCaxiSL0Rmm3sJ+iyZekljKEYKo1UHSzX4UFOo5VDLgRhKomJf7g1p8glcbCHXB/70IcH8IhKnwlTznf8RPQ=="; + url = "https://registry.npmjs.org/vscode-css-languageservice/-/vscode-css-languageservice-4.3.5.tgz"; + sha512 = "g9Pjxt9T32jhY0nTOo7WRFm0As27IfdaAxcFa8c7Rml1ZqBn3XXbkExjzxY7sBWYm7I1Tp4dK6UHXHoUQHGwig=="; }; }; "vscode-debugadapter-testsupport-1.42.0" = { @@ -53816,13 +54635,13 @@ let sha512 = "X4pzcrJ8dE7M3ArFuySF5fgipKDd/EauXkiJwtjBIVRWpVNq0tF9+lNCyuC7iDUwP3Oq7ow/TGssD3GdG96Jow=="; }; }; - "vscode-emmet-helper-2.0.0" = { + "vscode-emmet-helper-2.0.5" = { name = "vscode-emmet-helper"; packageName = "vscode-emmet-helper"; - version = "2.0.0"; + version = "2.0.5"; src = fetchurl { - url = "https://registry.npmjs.org/vscode-emmet-helper/-/vscode-emmet-helper-2.0.0.tgz"; - sha512 = "ytR+Ajxs6zeYI0b4bPsl+nPU8xm852piJUtIwO1ajp1Pw7lwn3VeR+f4ynmxOl9IjfOdF2kW9T/qIkeFbKLwYw=="; + url = "https://registry.npmjs.org/vscode-emmet-helper/-/vscode-emmet-helper-2.0.5.tgz"; + sha512 = "lDP+soFnJgEkUrdAWqdUYRFfXRFnmXhjzyzca+fy9vCUorr3lp32IKIys8mYwnlAUencmyXmF5JwN0VikUXj/Q=="; }; }; "vscode-html-languageservice-2.1.12" = { @@ -53834,13 +54653,13 @@ let sha512 = "mIb5VMXM5jI97HzCk2eadI1K//rCEZXte0wBqA7PGXsyJH4KTyJUaYk9MR+mbfpUl2vMi3HZw9GUOLGYLc6l5w=="; }; }; - "vscode-json-languageservice-3.9.0" = { + "vscode-json-languageservice-3.9.1" = { name = "vscode-json-languageservice"; packageName = "vscode-json-languageservice"; - version = "3.9.0"; + version = "3.9.1"; src = fetchurl { - url = "https://registry.npmjs.org/vscode-json-languageservice/-/vscode-json-languageservice-3.9.0.tgz"; - sha512 = "J+2rbntYRLNL9wk0D2iovWo1df3JwYM+5VvWl1omNUgw+XbgpNBwpFZ/TsC1pTCdmpu5RMatXooplXZ8l/Irsg=="; + url = "https://registry.npmjs.org/vscode-json-languageservice/-/vscode-json-languageservice-3.9.1.tgz"; + sha512 = "oJkknkdCVitQ5XPSRa0weHjUxt8eSCptaL+MBQQlRsa6Nb8XnEY0S5wYnLUFHzEvKzwt01/LKk8LdOixWEXkNA=="; }; }; "vscode-jsonrpc-3.5.0" = { @@ -54230,13 +55049,13 @@ let sha512 = "uhmLFETqPPNyuLLbsKz6ioJ4q7AZHzD8ZVFNATNyICSZouqP2Sz0rotWQC8UNBF6VGSCs5abnKJoStA6JbCbfg=="; }; }; - "vue-3.0.0" = { + "vue-3.0.1" = { name = "vue"; packageName = "vue"; - version = "3.0.0"; + version = "3.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/vue/-/vue-3.0.0.tgz"; - sha512 = "ZMrAARZ32sGIaYKr7Fk2GZEBh/VhulSrGxcGBiAvbN4fhjl3tuJyNFbbbLFqGjndbLoBW66I2ECq8ICdvkKdJw=="; + url = "https://registry.npmjs.org/vue/-/vue-3.0.1.tgz"; + sha512 = "WBTgaQMJIWQuhlzMV6C0qvVrxyQSpx3gKwflYC0sqGKEZSxMIOYRnrIlHUN4ivUVvP7mUMxcnFTt7P+akdOkQA=="; }; }; "vue-cli-plugin-apollo-0.21.3" = { @@ -54275,13 +55094,13 @@ let sha512 = "Bvjlx7rH1Ulvus56KHeLXOjEi3JMOYTa1GAqZr9lBQhd8weK8mV7U7V2l85yokBZEWHJQjLn6X3nosY8TzkOKg=="; }; }; - "vue-eslint-parser-7.1.0" = { + "vue-eslint-parser-7.1.1" = { name = "vue-eslint-parser"; packageName = "vue-eslint-parser"; - version = "7.1.0"; + version = "7.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/vue-eslint-parser/-/vue-eslint-parser-7.1.0.tgz"; - sha512 = "Kr21uPfthDc63nDl27AGQEhtt9VrZ9nkYk/NTftJ2ws9XiJwzJJCnCr3AITQ2jpRMA0XPGDECxYH8E027qMK9Q=="; + url = "https://registry.npmjs.org/vue-eslint-parser/-/vue-eslint-parser-7.1.1.tgz"; + sha512 = "8FdXi0gieEwh1IprIBafpiJWcApwrU+l2FEj8c1HtHFdNXMd0+2jUSjBVmcQYohf/E72irwAXEXLga6TQcB3FA=="; }; }; "vue-onsenui-helper-json-1.0.2" = { @@ -54311,6 +55130,15 @@ let sha512 = "p10l/ayESzrBMYWRID6xbuCKh2Fp77+sA0doRuGn4tTIMrrZVeqfpKjXHY+oDh3K4nLdPgNwMTVP6Vp4pvqbNg=="; }; }; + "w3c-xmlserializer-2.0.0" = { + name = "w3c-xmlserializer"; + packageName = "w3c-xmlserializer"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/w3c-xmlserializer/-/w3c-xmlserializer-2.0.0.tgz"; + sha512 = "4tzD0mF8iSiMiNs30BiLO3EpfGLZUT2MSX/G+o7ZywDzliWQ3OPtTZ0PTC3B3ca1UAf4cJMHB+2Bf56EriJuRA=="; + }; + }; "wait-port-0.2.9" = { name = "wait-port"; packageName = "wait-port"; @@ -54374,6 +55202,15 @@ let sha512 = "aWAgTW4MoSJzZPAicljkO1hsi1oKj/RRq/OJQh2PKI2UKL04c2Bs+MBOB+BBABHTXJpf9mCwHN7ANCvYsvY2sg=="; }; }; + "watchpack-2.0.0" = { + name = "watchpack"; + packageName = "watchpack"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/watchpack/-/watchpack-2.0.0.tgz"; + sha512 = "xSdCxxYZWNk3VK13bZRYhsQpfa8Vg63zXG+3pyU8ouqSLRCv4IGXIp9Kr226q6GBkGRlZrST2wwKtjfKz2m7Cg=="; + }; + }; "watchpack-chokidar2-2.0.0" = { name = "watchpack-chokidar2"; packageName = "watchpack-chokidar2"; @@ -54473,6 +55310,15 @@ let sha512 = "YQ+BmxuTgd6UXZW3+ICGfyqRyHXVlD5GtQr5+qjiNW7bF0cqrzX500HVXPBOvgXb5YnzDd+h0zqyv61KUD7+Sg=="; }; }; + "webidl-conversions-5.0.0" = { + name = "webidl-conversions"; + packageName = "webidl-conversions"; + version = "5.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/webidl-conversions/-/webidl-conversions-5.0.0.tgz"; + sha512 = "VlZwKPCkYKxQgeSbH5EyngOmRp7Ww7I9rQLERETtf5ofd9pGeswWiOtogpEO850jziPRarreGxn5QIiTqpb2wA=="; + }; + }; "webidl-conversions-6.1.0" = { name = "webidl-conversions"; packageName = "webidl-conversions"; @@ -54581,6 +55427,15 @@ let sha512 = "9S6YyKKKh/Oz/eryM1RyLVDVmy3NSPV0JXMRhZ18fJsq+AwGxUY34X54VNwkzYcEmEkDwNxuEOboCZEebJXBAQ=="; }; }; + "webpack-merge-4.2.2" = { + name = "webpack-merge"; + packageName = "webpack-merge"; + version = "4.2.2"; + src = fetchurl { + url = "https://registry.npmjs.org/webpack-merge/-/webpack-merge-4.2.2.tgz"; + sha512 = "TUE1UGoTX2Cd42j3krGYqObZbOD+xF7u28WB7tfUordytSjbWTIjK/8V0amkBfTYN4/pB/GIDlJZZ657BGG19g=="; + }; + }; "webpack-node-externals-2.5.1" = { name = "webpack-node-externals"; packageName = "webpack-node-externals"; @@ -54599,6 +55454,15 @@ let sha512 = "lgTS3Xhv1lCOKo7SA5TjKXMjpSM4sBjNV5+q2bqesbSPs5FjGmU6jjtBSkX9b4qW87vDIsCIlUPOEhbZrMdjeQ=="; }; }; + "webpack-sources-2.0.1" = { + name = "webpack-sources"; + packageName = "webpack-sources"; + version = "2.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/webpack-sources/-/webpack-sources-2.0.1.tgz"; + sha512 = "A9oYz7ANQBK5EN19rUXbvNgfdfZf5U2gP0769OXsj9CvYkCR6OHOsd6OKyEy4H38GGxpsQPKIL83NC64QY6Xmw=="; + }; + }; "webpack-stream-5.2.1" = { name = "webpack-stream"; packageName = "webpack-stream"; @@ -54653,15 +55517,6 @@ let sha512 = "OqedPIGOfsDlo31UNwYbCFMSaO9m9G/0faIHj5/dZFDMFqPTcx6UwqyOy3COEaEOg/9VsGIpdqn62W5KhoKSpg=="; }; }; - "websocket-stream-5.5.2" = { - name = "websocket-stream"; - packageName = "websocket-stream"; - version = "5.5.2"; - src = fetchurl { - url = "https://registry.npmjs.org/websocket-stream/-/websocket-stream-5.5.2.tgz"; - sha512 = "8z49MKIHbGk3C4HtuHWDtYX8mYej1wWabjthC/RupM9ngeukU4IWoM46dgth1UOS/T4/IqgEdCDJuMe2039OQQ=="; - }; - }; "webtorrent-0.108.6" = { name = "webtorrent"; packageName = "webtorrent"; @@ -54689,6 +55544,15 @@ let sha512 = "b5lim54JOPN9HtzvK9HFXvBma/rnfFeqsic0hSpjtDbVxR3dJKLc+KB4V6GgiGOvl7CY/KNh8rxSo9DKQrnUEw=="; }; }; + "whatwg-fetch-3.4.1" = { + name = "whatwg-fetch"; + packageName = "whatwg-fetch"; + version = "3.4.1"; + src = fetchurl { + url = "https://registry.npmjs.org/whatwg-fetch/-/whatwg-fetch-3.4.1.tgz"; + sha512 = "sofZVzE1wKwO+EYPbWfiwzaKovWiZXf4coEzjGP9b2GBVgQRLQUZ2QcuPpQExGDAW5GItpEm6Tl4OU5mywnAoQ=="; + }; + }; "whatwg-mimetype-2.3.0" = { name = "whatwg-mimetype"; packageName = "whatwg-mimetype"; @@ -54725,6 +55589,15 @@ let sha512 = "PcVnO6NiewhkmzV0qn7A+UZ9Xx4maNTI+O+TShmfE4pqjoCMwUMjkvoNhNHPTvgR7QH9Xt3R13iHuWy2sToFxQ=="; }; }; + "whatwg-url-8.4.0" = { + name = "whatwg-url"; + packageName = "whatwg-url"; + version = "8.4.0"; + src = fetchurl { + url = "https://registry.npmjs.org/whatwg-url/-/whatwg-url-8.4.0.tgz"; + sha512 = "vwTUFf6V4zhcPkWp/4CQPr1TW9Ml6SF4lVyaIMBdJw5i6qUUJ1QWM4Z6YYVkfka0OUIzVo/0aNtGVGk256IKWw=="; + }; + }; "whatwg-url-compat-0.6.5" = { name = "whatwg-url-compat"; packageName = "whatwg-url-compat"; @@ -54752,6 +55625,15 @@ let sha1 = "c7130b6a7ea04693e842cdc9e7a1f2aa39a39f82"; }; }; + "whet.extend-0.9.9" = { + name = "whet.extend"; + packageName = "whet.extend"; + version = "0.9.9"; + src = fetchurl { + url = "https://registry.npmjs.org/whet.extend/-/whet.extend-0.9.9.tgz"; + sha1 = "f877d5bf648c97e5aa542fadc16d6a259b9c11a1"; + }; + }; "which-1.2.4" = { name = "which"; packageName = "which"; @@ -55112,6 +55994,15 @@ let sha512 = "mO8XtqyPvykVCsrwj5MlOVWvSnCdT+C+QVbm6blradR7JExAhbkZ7hZ9A+9NUtwzSqrlUo9a67ws0EiILrvRpw=="; }; }; + "wordwrapjs-4.0.0" = { + name = "wordwrapjs"; + packageName = "wordwrapjs"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/wordwrapjs/-/wordwrapjs-4.0.0.tgz"; + sha512 = "Svqw723a3R34KvsMgpjFBYCgNOSdcW3mQFK4wIfhGQhtaFVOJmdYoXgi63ne3dTlWgatVcUc7t4HtQ/+bUVIzQ=="; + }; + }; "workbox-background-sync-3.6.3" = { name = "workbox-background-sync"; packageName = "workbox-background-sync"; @@ -55274,13 +56165,13 @@ let sha512 = "P1WjMrUB3qgJNI9jfmpZ/htmBEjFh//6l/5y8SD9hg1Ef5zTTVVoRjTrTEzPrNBQvmhMxkoTsjOXN10GWU7aCg=="; }; }; - "workerpool-6.0.0" = { + "workerpool-6.0.2" = { name = "workerpool"; packageName = "workerpool"; - version = "6.0.0"; + version = "6.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/workerpool/-/workerpool-6.0.0.tgz"; - sha512 = "fU2OcNA/GVAJLLyKUoHkAgIhKb0JoCpSjLC/G2vYKxUjVmQwGbRVeoPJ1a8U4pnVofz4AQV5Y/NEw8oKqxEBtA=="; + url = "https://registry.npmjs.org/workerpool/-/workerpool-6.0.2.tgz"; + sha512 = "DSNyvOpFKrNusaaUwk+ej6cBj1bmhLcBfj80elGk+ZIo5JSkq+unB1dLKEOcNfJDZgjGICfhQ0Q5TbP0PvF4+Q=="; }; }; "wrap-ansi-2.1.0" = { @@ -55373,6 +56264,15 @@ let sha512 = "/lg70HAjtkUgWPVZhZcm+T4hkL8Zbtp1nFNOn3lRrxnlv50SRBv7cR7RqR+GMsd3hUXy9hWBo4CHTbFTcOYwig=="; }; }; + "write-file-atomic-1.3.4" = { + name = "write-file-atomic"; + packageName = "write-file-atomic"; + version = "1.3.4"; + src = fetchurl { + url = "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-1.3.4.tgz"; + sha1 = "f807a4f0b1d9e913ae7a48112e6cc3af1991b45f"; + }; + }; "write-file-atomic-2.4.3" = { name = "write-file-atomic"; packageName = "write-file-atomic"; @@ -55950,13 +56850,13 @@ let sha512 = "3MgPdaXV8rfQ/pNn16Eio6VXYPTkqwa0vc7GkiymmY/DqR1SE/7VPAAVZz1GJsJFrllMYO3RHfEaiUGjab6TNw=="; }; }; - "xstream-11.13.0" = { + "xstream-11.14.0" = { name = "xstream"; packageName = "xstream"; - version = "11.13.0"; + version = "11.14.0"; src = fetchurl { - url = "https://registry.npmjs.org/xstream/-/xstream-11.13.0.tgz"; - sha512 = "IiTO53rJ+Y5Jj7qMq0f3nwWU1KsajkJkzudTXJa/f3DQ1ifw5O6z/IFZuYF4osfPKhU85jyGaSfY3zqdiMNTVw=="; + url = "https://registry.npmjs.org/xstream/-/xstream-11.14.0.tgz"; + sha512 = "1bLb+kKKtKPbgTK6i/BaoAn03g47PpFstlbe1BA+y3pNS/LfvcaghS5BFf9+EE1J+KwSQsEpfJvFN5GqFtiNmw=="; }; }; "xtend-2.0.6" = { @@ -56022,13 +56922,13 @@ let sha512 = "r9S/ZyXu/Xu9q1tYlpsLIsa3EeLXXk0VwlxqTcFRfg9EhMW+17kbt9G0NrgCmhGb5vT2hyhJZLfDGx+7+5Uj/w=="; }; }; - "y18n-5.0.2" = { + "y18n-5.0.4" = { name = "y18n"; packageName = "y18n"; - version = "5.0.2"; + version = "5.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/y18n/-/y18n-5.0.2.tgz"; - sha512 = "CkwaeZw6dQgqgPGeTWKMXCRmMcBgETFlTml1+ZOO+q7kGst8NREJ+eWwFNPVUQ4QGdAaklbqCZHH6Zuep1RjiA=="; + url = "https://registry.npmjs.org/y18n/-/y18n-5.0.4.tgz"; + sha512 = "deLOfD+RvFgrpAmSZgfGdWYE+OKyHcVHaRQ7NphG/63scpRvTHHeQMAxGGvaLVGJ+HYVcCXlzcTK0ZehFf+eHQ=="; }; }; "yaeti-0.0.6" = { @@ -56202,6 +57102,15 @@ let sha512 = "6+nLw8xa9uK1BOEOykaiYAJVh6/CjxWXK/q9b5FpRgNslt8s22F2xMBqVIKgCRjNgGvGPBy8Vog7WN7yh4amtA=="; }; }; + "yargs-16.1.0" = { + name = "yargs"; + packageName = "yargs"; + version = "16.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/yargs/-/yargs-16.1.0.tgz"; + sha512 = "upWFJOmDdHN0syLuESuvXDmrRcWd1QafJolHskzaw79uZa7/x53gxQKiR07W59GWY1tFhhU/Th9DrtSfpS782g=="; + }; + }; "yargs-3.10.0" = { name = "yargs"; packageName = "yargs"; @@ -56301,13 +57210,13 @@ let sha1 = "85568de3cf150ff49fa51825f03a8c880ddcc5c4"; }; }; - "yargs-parser-20.2.1" = { + "yargs-parser-20.2.3" = { name = "yargs-parser"; packageName = "yargs-parser"; - version = "20.2.1"; + version = "20.2.3"; src = fetchurl { - url = "https://registry.npmjs.org/yargs-parser/-/yargs-parser-20.2.1.tgz"; - sha512 = "yYsjuSkjbLMBp16eaOt7/siKTjNVjMm3SoJnIg3sEh/JsvqVVDyjRKmaJV4cl+lNIgq6QEco2i3gDebJl7/vLA=="; + url = "https://registry.npmjs.org/yargs-parser/-/yargs-parser-20.2.3.tgz"; + sha512 = "emOFRT9WVHw03QSvN5qor9QQT9+sw5vwxfYweivSMHTcAXPefwVae2FjO7JJjj8hCE4CzPOPeFM83VwT29HCww=="; }; }; "yargs-parser-4.2.1" = { @@ -56355,13 +57264,13 @@ let sha512 = "W9tKgmSn0DpSatfri0nx52Joq5hVXgeLiqR/5G0sZNDoLZFOr/xjBUDcShCOGNsBnEMNo1KAMBkTej1Hm62HTw=="; }; }; - "yargs-unparser-1.6.1" = { + "yargs-unparser-2.0.0" = { name = "yargs-unparser"; packageName = "yargs-unparser"; - version = "1.6.1"; + version = "2.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/yargs-unparser/-/yargs-unparser-1.6.1.tgz"; - sha512 = "qZV14lK9MWsGCmcr7u5oXGH0dbGqZAIxTDrWXZDo5zUr6b6iUmelNKO6x6R1dQT24AH3LgRxJpr8meWy2unolA=="; + url = "https://registry.npmjs.org/yargs-unparser/-/yargs-unparser-2.0.0.tgz"; + sha512 = "7pRTIA9Qc1caZ0bZ6RYRGbHJthJWuakf+WmHK0rVeLkNrrGhfoabBNdue6kdINI6r4if7ocq9aD/n7xwKOdzOA=="; }; }; "yarn-1.22.10" = { @@ -56577,17 +57486,17 @@ in "@angular/cli" = nodeEnv.buildNodePackage { name = "_at_angular_slash_cli"; packageName = "@angular/cli"; - version = "10.1.4"; + version = "10.1.7"; src = fetchurl { - url = "https://registry.npmjs.org/@angular/cli/-/cli-10.1.4.tgz"; - sha512 = "Q61cqx3qMAtMugE28aWAtAaj+c31pRjGlq7xSH2LhQSmaGyoAq7v6qah6gqH1Ik8nlpF9T7jBIozKyqX9aXysg=="; + url = "https://registry.npmjs.org/@angular/cli/-/cli-10.1.7.tgz"; + sha512 = "0tbeHnPIzSV/z+KlZT7N2J1yMnwQi4xIxvbsANrLjoAxNssse84i9BDdMZYsPoV8wbzcDhFOtt5KmfTO0GIeYQ=="; }; dependencies = [ - sources."@angular-devkit/architect-0.1001.4" - sources."@angular-devkit/core-10.1.4" - sources."@angular-devkit/schematics-10.1.4" - sources."@schematics/angular-10.1.4" - sources."@schematics/update-0.1001.4" + sources."@angular-devkit/architect-0.1001.7" + sources."@angular-devkit/core-10.1.7" + sources."@angular-devkit/schematics-10.1.7" + sources."@schematics/angular-10.1.7" + sources."@schematics/update-0.1001.7" sources."@yarnpkg/lockfile-1.1.0" sources."JSONStream-1.3.5" sources."agent-base-4.3.0" @@ -56622,7 +57531,7 @@ in sources."chardet-0.7.0" sources."chownr-1.1.4" sources."cli-cursor-3.1.0" - sources."cli-spinners-2.4.0" + sources."cli-spinners-2.5.0" sources."cli-width-3.0.0" sources."clone-1.0.4" sources."color-convert-2.0.1" @@ -56684,7 +57593,7 @@ in sources."has-1.0.3" sources."has-flag-4.0.0" sources."has-symbols-1.0.1" - sources."hosted-git-info-3.0.5" + sources."hosted-git-info-3.0.7" sources."http-cache-semantics-3.8.1" (sources."http-proxy-agent-2.1.0" // { dependencies = [ @@ -56893,7 +57802,7 @@ in sources."through2-2.0.5" sources."tmp-0.0.33" sources."tough-cookie-2.5.0" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."type-fest-0.11.0" @@ -57261,7 +58170,7 @@ in ]; }) sources."to-utf8-0.0.1" - sources."uglify-js-3.11.1" + sources."uglify-js-3.11.3" sources."unc-path-regex-0.1.2" sources."unique-stream-2.3.1" sources."universalify-0.1.2" @@ -57312,7 +58221,7 @@ in sources."acorn-globals-4.3.4" sources."acorn-walk-6.2.0" sources."agent-base-5.1.1" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-escapes-3.2.0" sources."ansi-regex-3.0.0" sources."ansi-styles-3.2.1" @@ -57435,7 +58344,7 @@ in sources."tmp-0.0.33" sources."tough-cookie-2.5.0" sources."tr46-1.0.1" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."type-check-0.3.2" @@ -57503,7 +58412,7 @@ in sources."@types/anymatch-1.3.1" sources."@types/json-schema-7.0.6" sources."@types/json5-0.0.29" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."@types/parse-json-4.0.0" sources."@types/source-list-map-0.1.2" sources."@types/tapable-1.0.6" @@ -57639,7 +58548,7 @@ in ]; }) sources."cli-cursor-3.1.0" - sources."cli-spinners-2.4.0" + sources."cli-spinners-2.5.0" (sources."cli-table3-0.5.1" // { dependencies = [ sources."ansi-regex-3.0.0" @@ -57916,7 +58825,7 @@ in }) sources."ms-2.0.0" sources."mute-stream-0.0.8" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."nanomatch-1.2.13" sources."neo-async-2.6.2" sources."nice-try-1.0.5" @@ -58138,7 +59047,7 @@ in sources."chalk-2.4.2" ]; }) - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tty-browserify-0.0.0" sources."type-fest-0.11.0" sources."typedarray-0.0.6" @@ -58228,17 +59137,17 @@ in "@vue/cli" = nodeEnv.buildNodePackage { name = "_at_vue_slash_cli"; packageName = "@vue/cli"; - version = "4.5.7"; + version = "4.5.8"; src = fetchurl { - url = "https://registry.npmjs.org/@vue/cli/-/cli-4.5.7.tgz"; - sha512 = "rx6yzQQ0DLxtJGxvGti8R1ND/wF5ISIv+hwyh1qB2R9gO6WobhT9sUBB/8Rth5hxRj7/MuCIz6KgmTc2hW+u2g=="; + url = "https://registry.npmjs.org/@vue/cli/-/cli-4.5.8.tgz"; + sha512 = "/hKE03mkpt+CHAL2UIdQC3B1rbNKzvBpU0280Pz9Vt1QlB9ruqBL+1MLJnm70+9d2+VX5Vk/mlaXBOuQz0ID4w=="; }; dependencies = [ sources."@akryum/winattr-3.0.0" sources."@apollo/federation-0.20.2" (sources."@apollo/protobufjs-1.0.5" // { dependencies = [ - sources."@types/node-10.17.37" + sources."@types/node-10.17.40" ]; }) sources."@apollographql/apollo-tools-0.4.8" @@ -58248,90 +59157,112 @@ in sources."@apollographql/graphql-language-service-utils-2.0.2" sources."@apollographql/graphql-playground-html-1.6.26" sources."@babel/code-frame-7.10.4" - (sources."@babel/compat-data-7.11.0" // { + sources."@babel/compat-data-7.12.1" + (sources."@babel/core-7.12.3" // { dependencies = [ - sources."semver-5.7.1" - ]; - }) - (sources."@babel/core-7.11.6" // { - dependencies = [ - sources."@babel/types-7.11.5" + sources."@babel/generator-7.12.1" + sources."@babel/types-7.12.1" sources."semver-5.7.1" ]; }) (sources."@babel/generator-7.11.6" // { dependencies = [ - sources."@babel/types-7.11.5" + sources."@babel/types-7.12.1" ]; }) sources."@babel/helper-annotate-as-pure-7.10.4" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.10.4" - (sources."@babel/helper-compilation-targets-7.10.4" // { + (sources."@babel/helper-compilation-targets-7.12.1" // { dependencies = [ sources."semver-5.7.1" ]; }) - sources."@babel/helper-create-class-features-plugin-7.10.5" - sources."@babel/helper-create-regexp-features-plugin-7.10.4" + sources."@babel/helper-create-class-features-plugin-7.12.1" + sources."@babel/helper-create-regexp-features-plugin-7.12.1" (sources."@babel/helper-define-map-7.10.5" // { dependencies = [ - sources."@babel/types-7.11.5" + sources."@babel/types-7.12.1" + ]; + }) + (sources."@babel/helper-explode-assignable-expression-7.12.1" // { + dependencies = [ + sources."@babel/types-7.12.1" ]; }) - sources."@babel/helper-explode-assignable-expression-7.11.4" sources."@babel/helper-function-name-7.10.4" sources."@babel/helper-get-function-arity-7.10.4" sources."@babel/helper-hoist-variables-7.10.4" - (sources."@babel/helper-member-expression-to-functions-7.11.0" // { + (sources."@babel/helper-member-expression-to-functions-7.12.1" // { dependencies = [ - sources."@babel/types-7.11.5" + sources."@babel/types-7.12.1" ]; }) - sources."@babel/helper-module-imports-7.10.4" - (sources."@babel/helper-module-transforms-7.11.0" // { + (sources."@babel/helper-module-imports-7.12.1" // { dependencies = [ - sources."@babel/types-7.11.5" + sources."@babel/types-7.12.1" + ]; + }) + (sources."@babel/helper-module-transforms-7.12.1" // { + dependencies = [ + sources."@babel/types-7.12.1" ]; }) sources."@babel/helper-optimise-call-expression-7.10.4" sources."@babel/helper-plugin-utils-7.10.4" sources."@babel/helper-regex-7.10.5" - sources."@babel/helper-remap-async-to-generator-7.11.4" - sources."@babel/helper-replace-supers-7.10.4" - sources."@babel/helper-simple-access-7.10.4" - (sources."@babel/helper-skip-transparent-expression-wrappers-7.11.0" // { + (sources."@babel/helper-remap-async-to-generator-7.12.1" // { dependencies = [ - sources."@babel/types-7.11.5" + sources."@babel/types-7.12.1" + ]; + }) + (sources."@babel/helper-replace-supers-7.12.1" // { + dependencies = [ + sources."@babel/types-7.12.1" + ]; + }) + (sources."@babel/helper-simple-access-7.12.1" // { + dependencies = [ + sources."@babel/types-7.12.1" + ]; + }) + (sources."@babel/helper-skip-transparent-expression-wrappers-7.12.1" // { + dependencies = [ + sources."@babel/types-7.12.1" ]; }) (sources."@babel/helper-split-export-declaration-7.11.0" // { dependencies = [ - sources."@babel/types-7.11.5" + sources."@babel/types-7.12.1" ]; }) sources."@babel/helper-validator-identifier-7.10.4" - sources."@babel/helper-wrap-function-7.10.4" - sources."@babel/helpers-7.10.4" + sources."@babel/helper-validator-option-7.12.1" + sources."@babel/helper-wrap-function-7.12.3" + (sources."@babel/helpers-7.12.1" // { + dependencies = [ + sources."@babel/types-7.12.1" + ]; + }) sources."@babel/highlight-7.10.4" - sources."@babel/parser-7.11.5" - sources."@babel/plugin-proposal-async-generator-functions-7.10.5" - sources."@babel/plugin-proposal-class-properties-7.10.4" - sources."@babel/plugin-proposal-dynamic-import-7.10.4" - sources."@babel/plugin-proposal-export-namespace-from-7.10.4" - sources."@babel/plugin-proposal-json-strings-7.10.4" - sources."@babel/plugin-proposal-logical-assignment-operators-7.11.0" - sources."@babel/plugin-proposal-nullish-coalescing-operator-7.10.4" - sources."@babel/plugin-proposal-numeric-separator-7.10.4" - sources."@babel/plugin-proposal-object-rest-spread-7.11.0" - sources."@babel/plugin-proposal-optional-catch-binding-7.10.4" - sources."@babel/plugin-proposal-optional-chaining-7.11.0" - sources."@babel/plugin-proposal-private-methods-7.10.4" - sources."@babel/plugin-proposal-unicode-property-regex-7.10.4" + sources."@babel/parser-7.12.3" + sources."@babel/plugin-proposal-async-generator-functions-7.12.1" + sources."@babel/plugin-proposal-class-properties-7.12.1" + sources."@babel/plugin-proposal-dynamic-import-7.12.1" + sources."@babel/plugin-proposal-export-namespace-from-7.12.1" + sources."@babel/plugin-proposal-json-strings-7.12.1" + sources."@babel/plugin-proposal-logical-assignment-operators-7.12.1" + sources."@babel/plugin-proposal-nullish-coalescing-operator-7.12.1" + sources."@babel/plugin-proposal-numeric-separator-7.12.1" + sources."@babel/plugin-proposal-object-rest-spread-7.12.1" + sources."@babel/plugin-proposal-optional-catch-binding-7.12.1" + sources."@babel/plugin-proposal-optional-chaining-7.12.1" + sources."@babel/plugin-proposal-private-methods-7.12.1" + sources."@babel/plugin-proposal-unicode-property-regex-7.12.1" sources."@babel/plugin-syntax-async-generators-7.8.4" - sources."@babel/plugin-syntax-class-properties-7.10.4" + sources."@babel/plugin-syntax-class-properties-7.12.1" sources."@babel/plugin-syntax-dynamic-import-7.8.3" sources."@babel/plugin-syntax-export-namespace-from-7.8.3" - sources."@babel/plugin-syntax-flow-7.10.4" + sources."@babel/plugin-syntax-flow-7.12.1" sources."@babel/plugin-syntax-json-strings-7.8.3" sources."@babel/plugin-syntax-logical-assignment-operators-7.10.4" sources."@babel/plugin-syntax-nullish-coalescing-operator-7.8.3" @@ -58339,63 +59270,64 @@ in sources."@babel/plugin-syntax-object-rest-spread-7.8.3" sources."@babel/plugin-syntax-optional-catch-binding-7.8.3" sources."@babel/plugin-syntax-optional-chaining-7.8.3" - sources."@babel/plugin-syntax-top-level-await-7.10.4" - sources."@babel/plugin-syntax-typescript-7.10.4" - sources."@babel/plugin-transform-arrow-functions-7.10.4" - sources."@babel/plugin-transform-async-to-generator-7.10.4" - sources."@babel/plugin-transform-block-scoped-functions-7.10.4" - sources."@babel/plugin-transform-block-scoping-7.11.1" - sources."@babel/plugin-transform-classes-7.10.4" - sources."@babel/plugin-transform-computed-properties-7.10.4" - sources."@babel/plugin-transform-destructuring-7.10.4" - sources."@babel/plugin-transform-dotall-regex-7.10.4" - sources."@babel/plugin-transform-duplicate-keys-7.10.4" - sources."@babel/plugin-transform-exponentiation-operator-7.10.4" - sources."@babel/plugin-transform-flow-strip-types-7.10.4" - sources."@babel/plugin-transform-for-of-7.10.4" - sources."@babel/plugin-transform-function-name-7.10.4" - sources."@babel/plugin-transform-literals-7.10.4" - sources."@babel/plugin-transform-member-expression-literals-7.10.4" - sources."@babel/plugin-transform-modules-amd-7.10.5" - sources."@babel/plugin-transform-modules-commonjs-7.10.4" - sources."@babel/plugin-transform-modules-systemjs-7.10.5" - sources."@babel/plugin-transform-modules-umd-7.10.4" - sources."@babel/plugin-transform-named-capturing-groups-regex-7.10.4" - sources."@babel/plugin-transform-new-target-7.10.4" - sources."@babel/plugin-transform-object-super-7.10.4" - sources."@babel/plugin-transform-parameters-7.10.5" - sources."@babel/plugin-transform-property-literals-7.10.4" - sources."@babel/plugin-transform-regenerator-7.10.4" - sources."@babel/plugin-transform-reserved-words-7.10.4" - sources."@babel/plugin-transform-shorthand-properties-7.10.4" - sources."@babel/plugin-transform-spread-7.11.0" - sources."@babel/plugin-transform-sticky-regex-7.10.4" - sources."@babel/plugin-transform-template-literals-7.10.5" - sources."@babel/plugin-transform-typeof-symbol-7.10.4" - sources."@babel/plugin-transform-typescript-7.11.0" - sources."@babel/plugin-transform-unicode-escapes-7.10.4" - sources."@babel/plugin-transform-unicode-regex-7.10.4" - (sources."@babel/preset-env-7.11.5" // { + sources."@babel/plugin-syntax-top-level-await-7.12.1" + sources."@babel/plugin-syntax-typescript-7.12.1" + sources."@babel/plugin-transform-arrow-functions-7.12.1" + sources."@babel/plugin-transform-async-to-generator-7.12.1" + sources."@babel/plugin-transform-block-scoped-functions-7.12.1" + sources."@babel/plugin-transform-block-scoping-7.12.1" + sources."@babel/plugin-transform-classes-7.12.1" + sources."@babel/plugin-transform-computed-properties-7.12.1" + sources."@babel/plugin-transform-destructuring-7.12.1" + sources."@babel/plugin-transform-dotall-regex-7.12.1" + sources."@babel/plugin-transform-duplicate-keys-7.12.1" + sources."@babel/plugin-transform-exponentiation-operator-7.12.1" + sources."@babel/plugin-transform-flow-strip-types-7.12.1" + sources."@babel/plugin-transform-for-of-7.12.1" + sources."@babel/plugin-transform-function-name-7.12.1" + sources."@babel/plugin-transform-literals-7.12.1" + sources."@babel/plugin-transform-member-expression-literals-7.12.1" + sources."@babel/plugin-transform-modules-amd-7.12.1" + sources."@babel/plugin-transform-modules-commonjs-7.12.1" + sources."@babel/plugin-transform-modules-systemjs-7.12.1" + sources."@babel/plugin-transform-modules-umd-7.12.1" + sources."@babel/plugin-transform-named-capturing-groups-regex-7.12.1" + sources."@babel/plugin-transform-new-target-7.12.1" + sources."@babel/plugin-transform-object-super-7.12.1" + sources."@babel/plugin-transform-parameters-7.12.1" + sources."@babel/plugin-transform-property-literals-7.12.1" + sources."@babel/plugin-transform-regenerator-7.12.1" + sources."@babel/plugin-transform-reserved-words-7.12.1" + sources."@babel/plugin-transform-shorthand-properties-7.12.1" + sources."@babel/plugin-transform-spread-7.12.1" + sources."@babel/plugin-transform-sticky-regex-7.12.1" + sources."@babel/plugin-transform-template-literals-7.12.1" + sources."@babel/plugin-transform-typeof-symbol-7.12.1" + sources."@babel/plugin-transform-typescript-7.12.1" + sources."@babel/plugin-transform-unicode-escapes-7.12.1" + sources."@babel/plugin-transform-unicode-regex-7.12.1" + (sources."@babel/preset-env-7.12.1" // { dependencies = [ - sources."@babel/types-7.11.5" + sources."@babel/types-7.12.1" sources."semver-5.7.1" ]; }) - sources."@babel/preset-flow-7.10.4" + sources."@babel/preset-flow-7.12.1" sources."@babel/preset-modules-0.1.4" - sources."@babel/preset-typescript-7.10.4" - (sources."@babel/register-7.11.5" // { + sources."@babel/preset-typescript-7.12.1" + (sources."@babel/register-7.12.1" // { dependencies = [ sources."make-dir-2.1.0" sources."pify-4.0.1" sources."semver-5.7.1" ]; }) - sources."@babel/runtime-7.11.2" + sources."@babel/runtime-7.12.1" sources."@babel/template-7.10.4" - (sources."@babel/traverse-7.11.5" // { + (sources."@babel/traverse-7.12.1" // { dependencies = [ - sources."@babel/types-7.11.5" + sources."@babel/generator-7.12.1" + sources."@babel/types-7.12.1" ]; }) sources."@babel/types-7.10.4" @@ -58433,7 +59365,7 @@ in dependencies = [ sources."globby-11.0.1" sources."is-wsl-2.2.0" - sources."tslib-2.0.2" + sources."tslib-2.0.3" ]; }) (sources."@oclif/errors-1.3.3" // { @@ -58478,7 +59410,7 @@ in sources."npm-run-path-3.1.0" sources."path-key-3.1.1" sources."semver-7.3.2" - sources."tslib-2.0.2" + sources."tslib-2.0.3" ]; }) (sources."@oclif/plugin-warn-if-update-available-1.7.0" // { @@ -58526,12 +59458,12 @@ in ]; }) sources."@types/keygrip-1.0.2" - sources."@types/koa-2.11.4" + sources."@types/koa-2.11.5" sources."@types/koa-compose-3.2.5" sources."@types/long-4.0.1" sources."@types/mime-2.0.3" sources."@types/minimatch-3.0.3" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" (sources."@types/node-fetch-2.5.7" // { dependencies = [ sources."form-data-3.0.0" @@ -58544,38 +59476,38 @@ in sources."@types/through-0.0.30" sources."@types/ws-7.2.7" sources."@types/zen-observable-0.8.1" - sources."@vue/cli-shared-utils-4.5.7" - (sources."@vue/cli-ui-4.5.7" // { + sources."@vue/cli-shared-utils-4.5.8" + (sources."@vue/cli-ui-4.5.8" // { dependencies = [ sources."clone-2.1.2" ]; }) - sources."@vue/cli-ui-addon-webpack-4.5.7" - sources."@vue/cli-ui-addon-widgets-4.5.7" - (sources."@vue/compiler-core-3.0.0" // { + sources."@vue/cli-ui-addon-webpack-4.5.8" + sources."@vue/cli-ui-addon-widgets-4.5.8" + (sources."@vue/compiler-core-3.0.1" // { dependencies = [ - sources."@babel/types-7.11.5" + sources."@babel/types-7.12.1" sources."source-map-0.6.1" ]; }) - sources."@vue/compiler-dom-3.0.0" - (sources."@vue/compiler-sfc-3.0.0" // { + sources."@vue/compiler-dom-3.0.1" + (sources."@vue/compiler-sfc-3.0.1" // { dependencies = [ - sources."@babel/types-7.11.5" + sources."@babel/types-7.12.1" sources."source-map-0.6.1" ]; }) - sources."@vue/compiler-ssr-3.0.0" - sources."@vue/reactivity-3.0.0" - sources."@vue/runtime-core-3.0.0" - sources."@vue/runtime-dom-3.0.0" - sources."@vue/shared-3.0.0" + sources."@vue/compiler-ssr-3.0.1" + sources."@vue/reactivity-3.0.1" + sources."@vue/runtime-core-3.0.1" + sources."@vue/runtime-dom-3.0.1" + sources."@vue/shared-3.0.1" sources."@wry/context-0.4.4" sources."@wry/equality-0.1.11" sources."abbrev-1.1.1" sources."accepts-1.3.7" sources."aggregate-error-3.1.0" - sources."ajv-6.12.5" + sources."ajv-6.12.6" (sources."ansi-align-2.0.0" // { dependencies = [ sources."ansi-regex-3.0.0" @@ -58625,13 +59557,9 @@ in sources."apollo-client-2.6.10" (sources."apollo-codegen-core-0.38.0" // { dependencies = [ - (sources."recast-0.20.3" // { - dependencies = [ - sources."ast-types-0.14.1" - ]; - }) + sources."recast-0.20.4" sources."source-map-0.6.1" - sources."tslib-2.0.2" + sources."tslib-2.0.3" ]; }) sources."apollo-codegen-flow-0.36.0" @@ -58685,7 +59613,7 @@ in sources."assign-symbols-1.0.0" (sources."ast-types-0.14.2" // { dependencies = [ - sources."tslib-2.0.2" + sources."tslib-2.0.3" ]; }) sources."astral-regex-1.0.0" @@ -58775,7 +59703,7 @@ in sources."callsites-2.0.0" sources."camel-case-4.1.1" sources."camelcase-4.1.0" - sources."caniuse-lite-1.0.30001144" + sources."caniuse-lite-1.0.30001148" sources."capital-case-1.0.3" sources."capture-stack-trace-1.0.1" sources."cardinal-2.1.1" @@ -58820,7 +59748,7 @@ in sources."cli-boxes-1.0.0" sources."cli-cursor-2.1.0" sources."cli-progress-3.8.2" - sources."cli-spinners-2.4.0" + sources."cli-spinners-2.5.0" (sources."cli-truncate-0.2.1" // { dependencies = [ sources."ansi-regex-2.1.1" @@ -58845,7 +59773,7 @@ in sources."semver-7.3.2" sources."supports-color-7.2.0" sources."supports-hyperlinks-2.1.0" - sources."tslib-2.0.2" + sources."tslib-2.0.3" sources."type-fest-0.11.0" ]; }) @@ -58983,19 +59911,19 @@ in sources."ecc-jsbn-0.1.2" sources."ee-first-1.1.1" sources."ejs-2.7.4" - sources."electron-to-chromium-1.3.578" + sources."electron-to-chromium-1.3.582" sources."elegant-spinner-1.0.1" sources."emoji-regex-8.0.0" sources."emojis-list-3.0.0" sources."encodeurl-1.0.2" sources."end-of-stream-1.4.4" - sources."entities-2.0.3" + sources."entities-2.1.0" sources."env-ci-3.2.2" sources."envinfo-7.7.3" sources."error-ex-1.3.2" sources."es-abstract-1.17.7" sources."es-to-primitive-1.2.1" - sources."escalade-3.1.0" + sources."escalade-3.1.1" sources."escape-html-1.0.3" sources."escape-string-regexp-1.0.5" sources."esm-3.2.25" @@ -59074,7 +60002,7 @@ in }) sources."find-up-3.0.0" sources."fkill-6.2.0" - sources."flow-parser-0.135.0" + sources."flow-parser-0.136.0" sources."for-in-1.0.2" sources."forever-agent-0.6.1" sources."form-data-2.3.3" @@ -59249,7 +60177,6 @@ in }) sources."interpret-1.4.0" sources."into-stream-2.0.1" - sources."invariant-2.2.4" sources."ipaddr.js-1.9.1" sources."is-accessor-descriptor-1.0.0" sources."is-arrayish-0.2.1" @@ -59337,7 +60264,6 @@ in sources."latest-version-3.1.0" sources."launch-editor-2.2.1" sources."leven-3.1.0" - sources."levenary-1.1.1" sources."lines-and-columns-1.1.6" sources."listr-0.14.3" sources."listr-silent-renderer-1.1.1" @@ -59395,7 +60321,6 @@ in }) sources."loglevel-1.7.0" sources."long-4.0.0" - sources."loose-envify-1.4.0" sources."lowdb-1.0.0" sources."lower-case-2.0.1" sources."lowercase-keys-1.0.1" @@ -59438,7 +60363,7 @@ in sources."moment-2.28.0" sources."ms-2.0.0" sources."mute-stream-0.0.8" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."nanoid-2.1.11" (sources."nanomatch-1.2.13" // { dependencies = [ @@ -59466,7 +60391,7 @@ in sources."is-wsl-2.2.0" ]; }) - sources."node-releases-1.1.61" + sources."node-releases-1.1.63" (sources."nodemon-1.19.4" // { dependencies = [ sources."debug-3.2.6" @@ -59502,7 +60427,7 @@ in }) sources."object-inspect-1.8.0" sources."object-keys-1.1.1" - sources."object-path-0.11.4" + sources."object-path-0.11.5" sources."object-treeify-1.1.28" sources."object-visit-1.0.1" (sources."object.assign-4.1.1" // { @@ -59593,7 +60518,7 @@ in sources."postcss-selector-parser-6.0.4" sources."postcss-value-parser-4.1.0" sources."prepend-http-1.0.4" - sources."prismjs-1.21.0" + sources."prismjs-1.22.0" sources."private-0.1.8" sources."process-exists-3.1.0" sources."process-nextick-args-2.0.1" @@ -59905,7 +60830,7 @@ in sources."trim-repeated-1.0.0" sources."ts-invariant-0.4.4" sources."ts-node-8.10.2" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tty-1.0.1" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" @@ -59992,7 +60917,7 @@ in (sources."vue-codemod-0.0.4" // { dependencies = [ sources."globby-10.0.2" - sources."vue-3.0.0" + sources."vue-3.0.1" ]; }) sources."watch-1.0.2" @@ -60177,12 +61102,12 @@ in }; dependencies = [ sources."@babel/code-frame-7.10.4" - sources."@babel/generator-7.11.6" + sources."@babel/generator-7.12.1" sources."@babel/helper-validator-identifier-7.10.4" sources."@babel/highlight-7.10.4" - sources."@babel/parser-7.11.5" + sources."@babel/parser-7.12.3" sources."@babel/template-7.10.4" - sources."@babel/types-7.11.5" + sources."@babel/types-7.12.1" sources."@webassemblyjs/ast-1.9.1" sources."@webassemblyjs/floating-point-hex-parser-1.9.1" sources."@webassemblyjs/helper-api-error-1.9.1" @@ -60262,32 +61187,32 @@ in }; dependencies = [ sources."@babel/code-frame-7.10.4" - (sources."@babel/core-7.11.6" // { + (sources."@babel/core-7.12.3" // { dependencies = [ sources."source-map-0.5.7" ]; }) - (sources."@babel/generator-7.11.6" // { + (sources."@babel/generator-7.12.1" // { dependencies = [ sources."source-map-0.5.7" ]; }) sources."@babel/helper-function-name-7.10.4" sources."@babel/helper-get-function-arity-7.10.4" - sources."@babel/helper-member-expression-to-functions-7.11.0" - sources."@babel/helper-module-imports-7.10.4" - sources."@babel/helper-module-transforms-7.11.0" + sources."@babel/helper-member-expression-to-functions-7.12.1" + sources."@babel/helper-module-imports-7.12.1" + sources."@babel/helper-module-transforms-7.12.1" sources."@babel/helper-optimise-call-expression-7.10.4" - sources."@babel/helper-replace-supers-7.10.4" - sources."@babel/helper-simple-access-7.10.4" + sources."@babel/helper-replace-supers-7.12.1" + sources."@babel/helper-simple-access-7.12.1" sources."@babel/helper-split-export-declaration-7.11.0" sources."@babel/helper-validator-identifier-7.10.4" - sources."@babel/helpers-7.10.4" + sources."@babel/helpers-7.12.1" sources."@babel/highlight-7.10.4" - sources."@babel/parser-7.11.5" + sources."@babel/parser-7.12.3" sources."@babel/template-7.10.4" - sources."@babel/traverse-7.11.5" - sources."@babel/types-7.11.5" + sources."@babel/traverse-7.12.1" + sources."@babel/types-7.12.1" sources."JSV-4.0.2" sources."ansi-styles-3.2.1" sources."array-unique-0.3.2" @@ -60388,7 +61313,7 @@ in dependencies = [ sources."@types/glob-7.1.3" sources."@types/minimatch-3.0.3" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."balanced-match-1.0.0" sources."brace-expansion-1.1.11" sources."chromium-pickle-js-0.2.0" @@ -60430,7 +61355,7 @@ in ]; }) sources."acorn-walk-6.2.0" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."array-equal-1.0.0" sources."asn1-0.2.4" sources."assert-plus-1.0.0" @@ -60704,16 +61629,17 @@ in browserify = nodeEnv.buildNodePackage { name = "browserify"; packageName = "browserify"; - version = "16.5.2"; + version = "17.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/browserify/-/browserify-16.5.2.tgz"; - sha512 = "TkOR1cQGdmXU9zW4YukWzWVSJwrxmNdADFbqbE3HFgQWe5wqZmOawqZ7J/8MPCwk/W8yY7Y0h+7mOtcZxLP23g=="; + url = "https://registry.npmjs.org/browserify/-/browserify-17.0.0.tgz"; + sha512 = "SaHqzhku9v/j6XsQMRxPyBrSP3gnwmE27gLJYZgMT2GeK3J0+0toN+MnuNYDfHwVGQfLiMZ7KSNSIXHemy905w=="; }; dependencies = [ sources."JSONStream-1.3.5" sources."acorn-7.4.1" sources."acorn-node-1.8.2" sources."acorn-walk-7.2.0" + sources."array-filter-1.0.0" (sources."asn1.js-5.4.1" // { dependencies = [ sources."bn.js-4.11.9" @@ -60725,6 +61651,7 @@ in sources."util-0.10.3" ]; }) + sources."available-typed-arrays-1.0.2" sources."balanced-match-1.0.0" sources."base64-js-1.3.1" sources."bn.js-5.1.3" @@ -60768,6 +61695,7 @@ in sources."create-hmac-1.1.7" sources."crypto-browserify-3.12.0" sources."dash-ast-1.0.0" + sources."define-properties-1.1.3" sources."defined-1.0.0" sources."deps-sort-2.0.1" sources."des.js-1.0.1" @@ -60784,14 +61712,18 @@ in sources."bn.js-4.11.9" ]; }) - sources."events-2.1.0" + sources."es-abstract-1.17.7" + sources."es-to-primitive-1.2.1" + sources."events-3.2.0" sources."evp_bytestokey-1.0.3" sources."fast-safe-stringify-2.0.7" + sources."foreach-2.0.5" sources."fs.realpath-1.0.0" sources."function-bind-1.1.1" sources."get-assigned-identifiers-1.2.0" sources."glob-7.1.6" sources."has-1.0.3" + sources."has-symbols-1.0.1" (sources."hash-base-3.1.0" // { dependencies = [ sources."readable-stream-3.6.0" @@ -60805,11 +61737,17 @@ in sources."inflight-1.0.6" sources."inherits-2.0.4" sources."inline-source-map-0.6.2" - sources."insert-module-globals-7.2.0" + sources."insert-module-globals-7.2.1" + sources."is-arguments-1.0.4" sources."is-buffer-1.1.6" + sources."is-callable-1.2.2" + sources."is-date-object-1.0.2" + sources."is-generator-function-1.0.7" + sources."is-negative-zero-2.0.0" + sources."is-regex-1.1.1" + sources."is-symbol-1.0.3" + sources."is-typed-array-1.1.3" sources."isarray-1.0.0" - sources."json-stable-stringify-0.0.1" - sources."jsonify-0.0.0" sources."jsonparse-1.3.1" sources."labeled-stream-splicer-2.0.2" sources."lodash.memoize-3.0.4" @@ -60826,12 +61764,19 @@ in sources."mkdirp-classic-0.5.3" sources."module-deps-6.2.3" sources."object-assign-4.1.1" + sources."object-inspect-1.8.0" + sources."object-keys-1.1.1" + (sources."object.assign-4.1.1" // { + dependencies = [ + sources."es-abstract-1.18.0-next.1" + ]; + }) sources."once-1.4.0" sources."os-browserify-0.3.0" sources."pako-1.0.11" sources."parents-1.0.1" sources."parse-asn1-5.1.6" - sources."path-browserify-0.0.1" + sources."path-browserify-1.0.1" sources."path-is-absolute-1.0.1" sources."path-parse-1.0.6" sources."path-platform-0.11.15" @@ -60860,12 +61805,15 @@ in sources."safe-buffer-5.2.1" sources."safer-buffer-2.1.2" sources."sha.js-2.4.11" - sources."shasum-1.0.2" sources."shasum-object-1.0.0" sources."shell-quote-1.7.2" sources."simple-concat-1.0.1" sources."source-map-0.5.7" - sources."stream-browserify-2.0.2" + (sources."stream-browserify-3.0.0" // { + dependencies = [ + sources."readable-stream-3.6.0" + ]; + }) sources."stream-combiner2-1.1.1" (sources."stream-http-3.1.1" // { dependencies = [ @@ -60873,6 +61821,8 @@ in ]; }) sources."stream-splicer-2.0.1" + sources."string.prototype.trimend-1.0.1" + sources."string.prototype.trimstart-1.0.1" sources."string_decoder-1.3.0" sources."subarg-1.0.0" sources."syntax-error-1.4.0" @@ -60888,13 +61838,10 @@ in sources."punycode-1.3.2" ]; }) - (sources."util-0.10.4" // { - dependencies = [ - sources."inherits-2.0.3" - ]; - }) + sources."util-0.12.3" sources."util-deprecate-1.0.2" sources."vm-browserify-1.1.2" + sources."which-typed-array-1.1.2" sources."wrappy-1.0.2" sources."xtend-4.0.2" ]; @@ -60928,10 +61875,10 @@ in sources."@protobufjs/pool-1.1.0" sources."@protobufjs/utf8-1.1.0" sources."@types/long-4.0.1" - sources."@types/node-13.13.23" + sources."@types/node-13.13.26" sources."addr-to-ip-port-1.5.1" sources."airplay-js-0.2.16" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-regex-1.1.1" sources."ansi-styles-2.2.1" sources."append-0.1.1" @@ -61360,6 +62307,92 @@ in bypassCache = true; reconstructLock = true; }; + clubhouse-cli = nodeEnv.buildNodePackage { + name = "clubhouse-cli"; + packageName = "clubhouse-cli"; + version = "2.7.0"; + src = fetchurl { + url = "https://registry.npmjs.org/clubhouse-cli/-/clubhouse-cli-2.7.0.tgz"; + sha512 = "Vu0ZPruo16+CbH/kCEALHV3lQ4WnRoaqTb+HPy2fY9ywtdOxPCiT//3WSxv8YN5qFwMbI2Fu931mmU9sR/O0ZA=="; + }; + dependencies = [ + sources."ansi-styles-3.2.1" + sources."async-0.9.2" + sources."balanced-match-1.0.0" + sources."brace-expansion-1.1.11" + sources."chalk-2.4.2" + sources."cli-spinner-0.2.10" + sources."clubhouse-lib-0.10.0" + sources."color-convert-1.9.3" + sources."color-name-1.1.3" + sources."colors-1.4.0" + sources."commander-2.20.3" + sources."concat-map-0.0.1" + sources."cycle-1.0.3" + sources."debug-4.3.0" + sources."decode-uri-component-0.2.0" + sources."deep-equal-0.2.2" + sources."encoding-0.1.13" + sources."escape-string-regexp-1.0.5" + sources."eyes-0.1.8" + sources."fetch-everywhere-1.0.5" + sources."fs.realpath-1.0.0" + sources."glob-7.1.6" + sources."has-flag-3.0.0" + sources."hasurl-1.0.0" + sources."i-0.3.6" + sources."iconv-lite-0.6.2" + sources."inflight-1.0.6" + sources."inherits-2.0.4" + sources."is-stream-1.1.0" + sources."isstream-0.1.2" + sources."lodash.sortby-4.7.0" + sources."minimatch-3.0.4" + sources."minimist-1.2.5" + sources."mkdirp-0.5.5" + sources."ms-2.1.2" + sources."mute-stream-0.0.8" + sources."ncp-1.0.1" + sources."node-fetch-1.7.3" + sources."once-1.4.0" + sources."path-is-absolute-1.0.1" + sources."pkginfo-0.4.1" + sources."prompt-1.0.0" + sources."punycode-2.1.1" + sources."query-string-6.13.6" + sources."read-1.0.7" + sources."revalidator-0.1.8" + sources."rimraf-2.7.1" + sources."safer-buffer-2.1.2" + sources."split-on-first-1.1.0" + sources."stack-trace-0.0.10" + sources."strict-uri-encode-2.0.0" + sources."supports-color-5.5.0" + sources."tr46-1.0.1" + sources."universal-url-2.0.0" + sources."utile-0.3.0" + sources."webidl-conversions-4.0.2" + sources."whatwg-fetch-3.4.1" + sources."whatwg-url-7.1.0" + (sources."winston-2.1.1" // { + dependencies = [ + sources."async-1.0.0" + sources."colors-1.0.3" + sources."pkginfo-0.3.1" + ]; + }) + sources."wrappy-1.0.2" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "A command line tool for viewing, creating and updating clubhouse.io stories"; + homepage = "https://github.com/andjosh/clubhouse-cli#readme"; + license = "MIT"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; coc-css = nodeEnv.buildNodePackage { name = "coc-css"; packageName = "coc-css"; @@ -61377,6 +62410,24 @@ in bypassCache = true; reconstructLock = true; }; + coc-diagnostic = nodeEnv.buildNodePackage { + name = "coc-diagnostic"; + packageName = "coc-diagnostic"; + version = "0.11.0"; + src = fetchurl { + url = "https://registry.npmjs.org/coc-diagnostic/-/coc-diagnostic-0.11.0.tgz"; + sha512 = "QdKxUVPcrX+/rkpWHjQtRePsT2tWZY586Ip7hGsn5WCP3SY/HyAfzuzk6tygC0C7VvXrV0WQd3VLIMwgpwWQnA=="; + }; + buildInputs = globalBuildInputs; + meta = { + description = "diagnostic-languageserver extension for coc.nvim"; + homepage = "https://github.com/iamcco/coc-diagnostic#readme"; + license = "MIT"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; coc-emmet = nodeEnv.buildNodePackage { name = "coc-emmet"; packageName = "coc-emmet"; @@ -61403,10 +62454,10 @@ in coc-eslint = nodeEnv.buildNodePackage { name = "coc-eslint"; packageName = "coc-eslint"; - version = "1.3.1"; + version = "1.3.2"; src = fetchurl { - url = "https://registry.npmjs.org/coc-eslint/-/coc-eslint-1.3.1.tgz"; - sha512 = "yiWUByuOtIHs1GnXspO59F5K0QtGYxMmpt8ZC2VvvB3DZZhEbhmBNrcoU66JaJP9y8tCZWTRh1eyobCRBL0pTA=="; + url = "https://registry.npmjs.org/coc-eslint/-/coc-eslint-1.3.2.tgz"; + sha512 = "4eKNFSYkwo2elYrtxRdQbe9HuSLVBYk5uBVHt7VPvEjysAGAZZJ8sUha8gl32mWbSrbbbrbIP1SfOomVJPQeNQ=="; }; buildInputs = globalBuildInputs; meta = { @@ -61420,10 +62471,10 @@ in coc-git = nodeEnv.buildNodePackage { name = "coc-git"; packageName = "coc-git"; - version = "2.0.1"; + version = "2.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/coc-git/-/coc-git-2.0.1.tgz"; - sha512 = "kPNmgaCx6hKshq/Vv5uugrPkQcDa7pVp+hosGADBP8qzHxudbumDA5va2vSzqjhUxAYEGTL92F0mBapg29pJhg=="; + url = "https://registry.npmjs.org/coc-git/-/coc-git-2.0.2.tgz"; + sha512 = "j7Hs+NHSk6nMEVobAi6NCGLuU8ME7FAbjaOWSszbsYidkXKQ/pwKoNl459YWRjePC/uDZKBbLERPYqX+Y0xAQw=="; }; buildInputs = globalBuildInputs; meta = { @@ -61446,7 +62497,7 @@ in dependencies = [ sources."isexe-2.0.0" sources."node-fetch-2.6.1" - sources."tslib-2.0.2" + sources."tslib-2.0.3" sources."vscode-uri-2.1.2" sources."which-2.0.2" ]; @@ -61637,7 +62688,7 @@ in sources."fb-watchman-2.0.1" sources."flatted-2.0.2" sources."follow-redirects-1.13.0" - sources."fp-ts-2.8.3" + sources."fp-ts-2.8.4" sources."fs-extra-8.1.0" sources."fs-minipass-2.1.0" sources."fs.realpath-1.0.0" @@ -61740,7 +62791,7 @@ in sources."strip-json-comments-2.0.1" sources."tar-6.0.5" sources."traverse-0.3.9" - sources."tslib-2.0.2" + sources."tslib-2.0.3" sources."universalify-0.1.2" sources."unzipper-0.10.11" sources."util-deprecate-1.0.2" @@ -61804,7 +62855,7 @@ in sources."@typescript-eslint/visitor-keys-3.10.1" sources."acorn-7.4.1" sources."acorn-jsx-5.3.1" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ajv-keywords-3.5.2" (sources."ansi-align-2.0.0" // { dependencies = [ @@ -61864,7 +62915,7 @@ in sources."callsites-3.1.0" sources."camelcase-2.1.1" sources."camelcase-keys-2.1.0" - sources."caniuse-lite-1.0.30001144" + sources."caniuse-lite-1.0.30001148" sources."capture-stack-trace-1.0.1" sources."ccount-1.0.5" sources."chalk-2.4.2" @@ -61953,7 +63004,7 @@ in (sources."dom-serializer-0.2.2" // { dependencies = [ sources."domelementtype-2.0.2" - sources."entities-2.0.3" + sources."entities-2.1.0" ]; }) sources."domelementtype-1.3.1" @@ -61961,7 +63012,7 @@ in sources."domutils-1.7.0" sources."dot-prop-5.3.0" sources."duplexer3-0.1.4" - sources."electron-to-chromium-1.3.578" + sources."electron-to-chromium-1.3.582" sources."emoji-regex-8.0.0" sources."end-of-stream-1.4.4" sources."entities-1.1.2" @@ -62642,7 +63693,7 @@ in sources."trim-newlines-1.0.0" sources."trim-trailing-lines-1.1.3" sources."trough-1.0.5" - sources."tslib-1.14.0" + sources."tslib-1.14.1" (sources."tslint-5.20.1" // { dependencies = [ sources."semver-5.7.1" @@ -62688,7 +63739,7 @@ in sources."vfile-2.3.0" sources."vfile-location-2.0.6" sources."vfile-message-1.1.1" - sources."vue-eslint-parser-7.1.0" + sources."vue-eslint-parser-7.1.1" sources."which-1.3.1" sources."which-module-2.0.0" (sources."widest-line-2.0.1" // { @@ -62878,28 +63929,28 @@ in }; dependencies = [ sources."@babel/code-frame-7.10.4" - sources."@babel/core-7.11.6" - sources."@babel/generator-7.11.6" + sources."@babel/core-7.12.3" + sources."@babel/generator-7.12.1" sources."@babel/helper-function-name-7.10.4" sources."@babel/helper-get-function-arity-7.10.4" - sources."@babel/helper-member-expression-to-functions-7.11.0" - sources."@babel/helper-module-imports-7.10.4" - sources."@babel/helper-module-transforms-7.11.0" + sources."@babel/helper-member-expression-to-functions-7.12.1" + sources."@babel/helper-module-imports-7.12.1" + sources."@babel/helper-module-transforms-7.12.1" sources."@babel/helper-optimise-call-expression-7.10.4" - sources."@babel/helper-replace-supers-7.10.4" - sources."@babel/helper-simple-access-7.10.4" + sources."@babel/helper-replace-supers-7.12.1" + sources."@babel/helper-simple-access-7.12.1" sources."@babel/helper-split-export-declaration-7.11.0" sources."@babel/helper-validator-identifier-7.10.4" - sources."@babel/helpers-7.10.4" + sources."@babel/helpers-7.12.1" (sources."@babel/highlight-7.10.4" // { dependencies = [ sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.11.5" + sources."@babel/parser-7.12.3" sources."@babel/template-7.10.4" - sources."@babel/traverse-7.11.5" - sources."@babel/types-7.11.5" + sources."@babel/traverse-7.12.1" + sources."@babel/types-7.12.1" sources."@nodelib/fs.scandir-2.1.3" sources."@nodelib/fs.stat-2.0.3" sources."@nodelib/fs.walk-1.2.4" @@ -62909,7 +63960,7 @@ in sources."@types/normalize-package-data-2.4.0" sources."@types/parse-json-4.0.0" sources."@types/unist-2.0.3" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-regex-5.0.0" sources."ansi-styles-3.2.1" sources."array-union-2.1.0" @@ -62924,7 +63975,7 @@ in sources."callsites-3.1.0" sources."camelcase-5.3.1" sources."camelcase-keys-6.2.2" - sources."caniuse-lite-1.0.30001144" + sources."caniuse-lite-1.0.30001148" sources."ccount-1.0.5" (sources."chalk-4.1.0" // { dependencies = [ @@ -62959,17 +64010,17 @@ in (sources."dom-serializer-0.2.2" // { dependencies = [ sources."domelementtype-2.0.2" - sources."entities-2.0.3" + sources."entities-2.1.0" ]; }) sources."domelementtype-1.3.1" sources."domhandler-2.4.2" sources."domutils-1.7.0" - sources."electron-to-chromium-1.3.578" + sources."electron-to-chromium-1.3.582" sources."emoji-regex-8.0.0" sources."entities-1.1.2" sources."error-ex-1.3.2" - sources."escalade-3.1.0" + sources."escalade-3.1.1" sources."escape-string-regexp-1.0.5" sources."execall-2.0.0" sources."extend-3.0.2" @@ -63060,7 +64111,7 @@ in }) sources."mkdirp-0.5.5" sources."ms-2.1.2" - sources."node-releases-1.1.61" + sources."node-releases-1.1.63" sources."normalize-package-data-2.5.0" sources."normalize-range-0.1.2" sources."normalize-selector-0.2.0" @@ -63147,7 +64198,7 @@ in sources."safe-buffer-5.2.1" ]; }) - sources."stringify-entities-3.0.1" + sources."stringify-entities-3.1.0" sources."strip-ansi-6.0.0" sources."strip-indent-3.0.0" sources."style-search-0.1.0" @@ -63172,7 +64223,7 @@ in sources."unist-util-remove-position-2.0.1" sources."unist-util-stringify-position-2.0.3" sources."unist-util-visit-2.0.3" - sources."unist-util-visit-parents-3.1.0" + sources."unist-util-visit-parents-3.1.1" sources."uri-js-4.4.0" sources."util-deprecate-1.0.2" sources."v8-compile-cache-2.1.1" @@ -63266,7 +64317,7 @@ in sources."semver-5.7.1" sources."sprintf-js-1.0.3" sources."supports-color-5.5.0" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tslint-5.20.1" sources."tsutils-2.29.0" sources."typescript-3.9.7" @@ -63364,7 +64415,7 @@ in }) sources."@nodelib/fs.stat-1.1.3" sources."@nodelib/fs.walk-1.2.4" - sources."@prettier/plugin-pug-1.8.1" + sources."@prettier/plugin-pug-1.9.0" sources."@sindresorhus/is-0.14.0" sources."@sorg/log-2.2.0" sources."@starptech/expression-parser-0.10.0" @@ -63391,13 +64442,17 @@ in sources."@types/json-schema-7.0.6" sources."@types/minimatch-3.0.3" sources."@types/minimist-1.2.0" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."@types/normalize-package-data-2.4.0" sources."@types/unist-2.0.3" sources."@types/vfile-3.0.2" sources."@types/vfile-message-2.0.0" sources."@typescript-eslint/experimental-utils-3.10.1" - sources."@typescript-eslint/parser-3.10.1" + (sources."@typescript-eslint/parser-3.10.1" // { + dependencies = [ + sources."eslint-visitor-keys-1.3.0" + ]; + }) sources."@typescript-eslint/types-3.10.1" (sources."@typescript-eslint/typescript-estree-3.10.1" // { dependencies = [ @@ -63405,7 +64460,11 @@ in sources."semver-7.3.2" ]; }) - sources."@typescript-eslint/visitor-keys-3.10.1" + (sources."@typescript-eslint/visitor-keys-3.10.1" // { + dependencies = [ + sources."eslint-visitor-keys-1.3.0" + ]; + }) sources."abbrev-1.1.1" sources."acorn-7.4.1" sources."acorn-jsx-5.3.1" @@ -63414,7 +64473,7 @@ in sources."indent-string-4.0.0" ]; }) - sources."ajv-6.12.5" + sources."ajv-6.12.6" (sources."ansi-align-3.0.0" // { dependencies = [ sources."ansi-regex-4.1.0" @@ -63617,7 +64676,7 @@ in sources."enquirer-2.3.6" sources."error-ex-1.3.2" sources."escape-string-regexp-1.0.5" - (sources."eslint-7.10.0" // { + (sources."eslint-7.11.0" // { dependencies = [ sources."ansi-regex-5.0.0" sources."ansi-styles-4.3.0" @@ -63638,15 +64697,23 @@ in sources."which-2.0.2" ]; }) - (sources."eslint-plugin-vue-7.0.1" // { + (sources."eslint-plugin-vue-7.1.0" // { dependencies = [ sources."semver-7.3.2" ]; }) sources."eslint-scope-5.1.1" - sources."eslint-utils-2.1.0" - sources."eslint-visitor-keys-1.3.0" - sources."espree-7.3.0" + (sources."eslint-utils-2.1.0" // { + dependencies = [ + sources."eslint-visitor-keys-1.3.0" + ]; + }) + sources."eslint-visitor-keys-2.0.0" + (sources."espree-7.3.0" // { + dependencies = [ + sources."eslint-visitor-keys-1.3.0" + ]; + }) sources."esprima-4.0.1" (sources."esquery-1.3.1" // { dependencies = [ @@ -64010,6 +65077,7 @@ in sources."debug-4.3.0" sources."eslint-6.8.0" sources."eslint-utils-1.4.3" + sources."eslint-visitor-keys-1.3.0" sources."espree-6.2.1" sources."ignore-4.0.6" sources."indent-string-4.0.0" @@ -64028,7 +65096,7 @@ in sources."pretty-format-23.6.0" sources."process-nextick-args-2.0.1" sources."progress-2.0.3" - sources."property-information-5.5.0" + sources."property-information-5.6.0" sources."proto-list-1.2.4" sources."pseudomap-1.0.2" sources."pug-error-2.0.0" @@ -64056,7 +65124,7 @@ in ]; }) sources."readable-stream-2.3.7" - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."redent-2.0.0" sources."regex-not-1.0.2" sources."regexpp-3.1.0" @@ -64251,7 +65319,7 @@ in sources."trim-newlines-2.0.0" sources."trim-trailing-lines-1.1.3" sources."trough-1.0.5" - sources."tslib-1.14.0" + sources."tslib-1.14.1" (sources."tslint-5.20.1" // { dependencies = [ sources."tsutils-2.29.0" @@ -64338,7 +65406,7 @@ in sources."vscode-languageserver-types-3.16.0-next.2" ]; }) - (sources."vscode-emmet-helper-2.0.0" // { + (sources."vscode-emmet-helper-2.0.5" // { dependencies = [ sources."vscode-languageserver-types-3.15.1" ]; @@ -64351,9 +65419,10 @@ in sources."vscode-nls-4.1.2" sources."vscode-uri-2.1.2" sources."vscode-web-custom-data-0.3.1" - (sources."vue-eslint-parser-7.1.0" // { + (sources."vue-eslint-parser-7.1.1" // { dependencies = [ sources."debug-4.3.0" + sources."eslint-visitor-keys-1.3.0" sources."espree-6.2.1" ]; }) @@ -64455,7 +65524,7 @@ in sources."prettier-2.0.5" sources."request-light-0.2.5" sources."sprintf-js-1.0.3" - (sources."vscode-json-languageservice-3.9.0" // { + (sources."vscode-json-languageservice-3.9.1" // { dependencies = [ sources."vscode-languageserver-types-3.16.0-next.2" sources."vscode-nls-5.0.0" @@ -64584,7 +65653,7 @@ in sources."color-3.0.0" sources."color-convert-1.9.3" sources."color-name-1.1.3" - sources."color-string-1.5.3" + sources."color-string-1.5.4" sources."colornames-1.1.1" sources."colors-1.4.0" sources."colorspace-1.1.2" @@ -64657,7 +65726,7 @@ in sources."@szmarczak/http-timer-1.1.2" sources."abbrev-1.1.1" sources."accepts-1.3.7" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-0.3.1" (sources."ansi-align-3.0.0" // { dependencies = [ @@ -64825,7 +65894,7 @@ in sources."har-validator-5.1.5" sources."has-flag-4.0.0" sources."has-yarn-2.1.0" - sources."hosted-git-info-3.0.5" + sources."hosted-git-info-3.0.7" sources."http-cache-semantics-4.1.0" (sources."http-errors-1.7.2" // { dependencies = [ @@ -64942,7 +66011,7 @@ in }) sources."normalize-url-4.5.0" sources."npm-normalize-package-bin-1.0.1" - sources."npm-package-arg-8.0.1" + sources."npm-package-arg-8.1.0" sources."npm-run-path-4.0.1" sources."oauth-sign-0.9.0" sources."objectorarray-1.0.4" @@ -65066,7 +66135,7 @@ in sources."strip-final-newline-2.0.0" sources."strip-json-comments-2.0.1" sources."supports-color-7.2.0" - sources."systeminformation-4.27.7" + sources."systeminformation-4.27.10" sources."term-size-2.2.0" sources."through-2.3.8" sources."tmp-0.2.1" @@ -65074,7 +66143,7 @@ in sources."to-regex-range-5.0.1" sources."toidentifier-1.0.0" sources."tough-cookie-3.0.1" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."type-fest-0.8.1" @@ -65153,7 +66222,7 @@ in sources."@types/glob-7.1.3" sources."@types/minimatch-3.0.3" sources."@types/minimist-1.2.0" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."@types/normalize-package-data-2.4.0" sources."aggregate-error-3.1.0" sources."ansi-styles-3.2.1" @@ -65520,8 +66589,8 @@ in }) sources."@cycle/run-3.4.0" sources."@cycle/time-0.10.1" - sources."@types/cookiejar-2.1.1" - sources."@types/node-14.11.5" + sources."@types/cookiejar-2.1.2" + sources."@types/node-14.11.10" sources."@types/superagent-3.8.2" sources."ansi-escapes-3.2.0" sources."ansi-regex-2.1.1" @@ -65549,6 +66618,7 @@ in sources."cycle-onionify-4.0.0" sources."d-1.0.1" sources."debug-3.2.6" + sources."define-properties-1.1.3" sources."delayed-stream-1.0.0" sources."es5-ext-0.10.53" sources."es6-iterator-2.0.3" @@ -65571,6 +66641,7 @@ in sources."figures-2.0.0" sources."form-data-2.5.1" sources."formidable-1.2.2" + sources."globalthis-1.0.1" sources."has-ansi-2.0.0" sources."has-flag-3.0.0" sources."iconv-lite-0.4.24" @@ -65603,6 +66674,7 @@ in sources."mute-stream-0.0.7" sources."next-tick-1.0.0" sources."object-assign-4.1.1" + sources."object-keys-1.1.1" sources."onetime-2.0.1" sources."os-tmpdir-1.0.2" sources."performance-now-2.1.0" @@ -65635,7 +66707,7 @@ in sources."strip-ansi-3.0.1" sources."superagent-3.8.3" sources."supports-color-2.0.0" - sources."symbol-observable-1.2.0" + sources."symbol-observable-2.0.3" sources."through-2.3.8" sources."tmp-0.0.33" sources."type-1.2.0" @@ -65646,7 +66718,7 @@ in ]; }) sources."which-1.3.1" - sources."xstream-11.13.0" + sources."xstream-11.14.0" sources."yallist-2.1.2" ]; buildInputs = globalBuildInputs; @@ -65773,7 +66845,7 @@ in ]; }) sources."tmp-0.1.0" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."type-fest-0.11.0" sources."uid-number-0.0.6" sources."universalify-0.1.2" @@ -65843,7 +66915,7 @@ in }; dependencies = [ sources."abstract-random-access-1.1.2" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-align-2.0.0" sources."ansi-diff-1.1.1" sources."ansi-regex-3.0.0" @@ -66198,7 +67270,7 @@ in sources."multistream-2.1.1" sources."mute-stream-0.0.8" sources."mutexify-1.3.1" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."nanoassert-1.1.0" sources."nanobus-4.4.0" sources."nanoguard-1.3.0" @@ -66573,7 +67645,7 @@ in sources."temp-dir-2.0.0" sources."tempy-0.7.1" sources."to-regex-range-5.0.1" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."type-fest-0.16.0" sources."unique-string-2.0.0" sources."vscode-jsonrpc-5.0.1" @@ -66635,12 +67707,12 @@ in }; dependencies = [ sources."JSONStream-1.3.5" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."asn1-0.2.4" sources."assert-plus-1.0.0" sources."async-2.6.3" sources."asynckit-0.4.0" - sources."aws-sdk-2.769.0" + sources."aws-sdk-2.773.0" sources."aws-sign2-0.7.0" sources."aws4-1.10.1" sources."base64-js-1.3.1" @@ -66694,7 +67766,7 @@ in sources."minimist-1.2.5" sources."oauth-sign-0.9.0" sources."p-finally-1.0.0" - sources."p-queue-6.6.1" + sources."p-queue-6.6.2" sources."p-timeout-3.2.0" sources."performance-now-2.1.0" sources."process-nextick-args-2.0.1" @@ -66784,45 +67856,45 @@ in }; dependencies = [ sources."@babel/code-frame-7.10.4" - sources."@babel/core-7.11.6" - sources."@babel/generator-7.11.6" + sources."@babel/core-7.12.3" + sources."@babel/generator-7.12.1" sources."@babel/helper-annotate-as-pure-7.10.4" sources."@babel/helper-builder-react-jsx-7.10.4" - sources."@babel/helper-builder-react-jsx-experimental-7.11.5" + sources."@babel/helper-builder-react-jsx-experimental-7.12.1" sources."@babel/helper-function-name-7.10.4" sources."@babel/helper-get-function-arity-7.10.4" - sources."@babel/helper-member-expression-to-functions-7.11.0" - sources."@babel/helper-module-imports-7.10.4" - sources."@babel/helper-module-transforms-7.11.0" + sources."@babel/helper-member-expression-to-functions-7.12.1" + sources."@babel/helper-module-imports-7.12.1" + sources."@babel/helper-module-transforms-7.12.1" sources."@babel/helper-optimise-call-expression-7.10.4" sources."@babel/helper-plugin-utils-7.10.4" - sources."@babel/helper-replace-supers-7.10.4" - sources."@babel/helper-simple-access-7.10.4" + sources."@babel/helper-replace-supers-7.12.1" + sources."@babel/helper-simple-access-7.12.1" sources."@babel/helper-split-export-declaration-7.11.0" sources."@babel/helper-validator-identifier-7.10.4" - sources."@babel/helpers-7.10.4" + sources."@babel/helpers-7.12.1" sources."@babel/highlight-7.10.4" - sources."@babel/parser-7.11.5" - sources."@babel/plugin-proposal-object-rest-spread-7.11.0" - sources."@babel/plugin-syntax-jsx-7.10.4" + sources."@babel/parser-7.12.3" + sources."@babel/plugin-proposal-object-rest-spread-7.12.1" + sources."@babel/plugin-syntax-jsx-7.12.1" sources."@babel/plugin-syntax-object-rest-spread-7.8.3" - sources."@babel/plugin-transform-destructuring-7.10.4" - sources."@babel/plugin-transform-parameters-7.10.5" - sources."@babel/plugin-transform-react-jsx-7.10.4" + sources."@babel/plugin-transform-destructuring-7.12.1" + sources."@babel/plugin-transform-parameters-7.12.1" + sources."@babel/plugin-transform-react-jsx-7.12.1" sources."@babel/template-7.10.4" - sources."@babel/traverse-7.11.5" - sources."@babel/types-7.11.5" + sources."@babel/traverse-7.12.1" + sources."@babel/types-7.12.1" sources."@sindresorhus/is-3.1.2" sources."@szmarczak/http-timer-4.0.5" sources."@types/cacheable-request-6.0.1" sources."@types/http-cache-semantics-4.0.0" sources."@types/keyv-3.1.1" sources."@types/minimist-1.2.0" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."@types/normalize-package-data-2.4.0" sources."@types/responselike-1.0.0" sources."@types/yoga-layout-1.9.2" - sources."ajv-6.12.5" + sources."ajv-6.12.6" (sources."ansi-escapes-4.3.1" // { dependencies = [ sources."type-fest-0.11.0" @@ -66833,7 +67905,7 @@ in sources."arch-2.1.2" sources."arrify-1.0.1" sources."astral-regex-2.0.0" - sources."atomically-1.3.2" + sources."atomically-1.5.0" sources."auto-bind-4.0.0" sources."balanced-match-1.0.0" sources."brace-expansion-1.1.11" @@ -67013,7 +68085,7 @@ in sources."pump-3.0.0" sources."punycode-2.1.1" sources."quick-lru-5.1.1" - sources."react-16.13.1" + sources."react-16.14.0" sources."react-devtools-core-4.8.2" sources."react-is-16.13.1" sources."react-reconciler-0.24.0" @@ -67134,10 +68206,10 @@ in sources."@fluentui/date-time-utilities-7.9.0" sources."@fluentui/dom-utilities-1.1.1" sources."@fluentui/keyboard-key-0.2.12" - sources."@fluentui/react-7.145.0" - sources."@fluentui/react-focus-7.16.10" + sources."@fluentui/react-7.147.1" + sources."@fluentui/react-focus-7.16.13" sources."@fluentui/react-window-provider-0.3.3" - sources."@fluentui/theme-1.3.0" + sources."@fluentui/theme-1.5.1" (sources."@gulp-sourcemaps/identity-map-1.0.2" // { dependencies = [ sources."normalize-path-2.1.1" @@ -67149,7 +68221,7 @@ in sources."normalize-path-2.1.1" ]; }) - sources."@microsoft/load-themed-styles-1.10.108" + sources."@microsoft/load-themed-styles-1.10.114" sources."@nodelib/fs.scandir-2.1.3" sources."@nodelib/fs.stat-2.0.3" sources."@nodelib/fs.walk-1.2.4" @@ -67190,12 +68262,12 @@ in sources."@types/sqlite3-3.1.6" sources."@types/tough-cookie-4.0.0" sources."@types/url-join-4.0.0" - sources."@uifabric/foundation-7.9.10" - sources."@uifabric/icons-7.5.9" + sources."@uifabric/foundation-7.9.14" + sources."@uifabric/icons-7.5.12" sources."@uifabric/merge-styles-7.19.1" sources."@uifabric/react-hooks-7.13.6" sources."@uifabric/set-version-7.0.23" - sources."@uifabric/styling-7.16.10" + sources."@uifabric/styling-7.16.13" sources."@uifabric/utilities-7.32.4" sources."@webassemblyjs/ast-1.9.0" sources."@webassemblyjs/floating-point-hex-parser-1.9.0" @@ -67222,7 +68294,7 @@ in sources."acorn-5.7.4" sources."after-0.8.2" sources."aggregate-error-3.1.0" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ajv-errors-1.0.1" sources."ajv-keywords-3.5.2" sources."ansi-colors-1.1.0" @@ -68039,7 +69111,7 @@ in sources."mute-stdout-1.0.1" sources."mute-stream-0.0.7" sources."mysql-2.18.1" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."nanomatch-1.2.13" (sources."needle-2.5.2" // { dependencies = [ @@ -68112,7 +69184,7 @@ in sources."object.map-1.0.1" sources."object.pick-1.3.0" sources."object.reduce-1.0.1" - sources."office-ui-fabric-react-7.145.0" + sources."office-ui-fabric-react-7.147.1" sources."on-finished-2.3.0" sources."on-headers-1.0.2" sources."once-1.4.0" @@ -68122,12 +69194,12 @@ in sources."openapi-types-7.0.1" ]; }) - (sources."openapi-framework-7.0.1" // { + (sources."openapi-framework-7.0.2" // { dependencies = [ sources."openapi-types-7.0.1" ]; }) - (sources."openapi-jsonschema-parameters-7.0.1" // { + (sources."openapi-jsonschema-parameters-7.0.2" // { dependencies = [ sources."openapi-types-7.0.1" ]; @@ -68137,7 +69209,7 @@ in sources."openapi-types-7.0.1" ]; }) - (sources."openapi-request-validator-7.0.1" // { + (sources."openapi-request-validator-7.0.2" // { dependencies = [ sources."openapi-types-7.0.1" ]; @@ -68264,8 +69336,8 @@ in sources."range-parser-1.2.1" sources."raw-body-2.4.0" sources."rc-1.2.8" - sources."react-16.13.1" - sources."react-dom-16.13.1" + sources."react-16.14.0" + sources."react-dom-16.14.0" sources."react-is-16.13.1" (sources."read-pkg-1.1.0" // { dependencies = [ @@ -68323,7 +69395,7 @@ in sources."safe-buffer-5.1.2" sources."safe-regex-1.1.0" sources."safer-buffer-2.1.2" - sources."sass-1.26.12" + sources."sass-1.27.0" sources."sax-1.2.4" sources."scheduler-0.19.1" sources."schema-utils-2.7.1" @@ -68523,7 +69595,7 @@ in ]; }) sources."ts-log-2.2.3" - sources."tslib-1.14.0" + sources."tslib-1.14.1" (sources."tslint-6.1.2" // { dependencies = [ sources."mkdirp-0.5.5" @@ -68566,7 +69638,7 @@ in }) sources."url-join-4.0.1" sources."url-parse-lax-3.0.0" - sources."url-toolkit-2.2.0" + sources."url-toolkit-2.2.1" sources."use-3.1.1" (sources."util-0.11.1" // { dependencies = [ @@ -68594,10 +69666,10 @@ in dependencies = [ sources."anymatch-3.1.1" sources."binary-extensions-2.1.0" - sources."chokidar-3.4.2" + sources."chokidar-3.4.3" sources."fsevents-2.1.3" sources."is-binary-path-2.1.0" - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" ]; }) sources."watchpack-chokidar2-2.0.0" @@ -68690,10 +69762,10 @@ in eslint = nodeEnv.buildNodePackage { name = "eslint"; packageName = "eslint"; - version = "7.10.0"; + version = "7.11.0"; src = fetchurl { - url = "https://registry.npmjs.org/eslint/-/eslint-7.10.0.tgz"; - sha512 = "BDVffmqWl7JJXqCjAK6lWtcQThZB/aP1HXSH1JKwGwv0LQEdvpR7qzNrUT487RM39B5goWuboFad5ovMBmD8yA=="; + url = "https://registry.npmjs.org/eslint/-/eslint-7.11.0.tgz"; + sha512 = "G9+qtYVCHaDi1ZuWzBsOWo2wSwd70TXnU6UHA3cTYHp7gCTXZcpggWFoUVAMRarg68qtPoNfFbzPh+VdOgmwmw=="; }; dependencies = [ sources."@babel/code-frame-7.10.4" @@ -68706,7 +69778,7 @@ in sources."@eslint/eslintrc-0.1.3" sources."acorn-7.4.1" sources."acorn-jsx-5.3.1" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-colors-4.1.1" sources."ansi-regex-5.0.0" sources."ansi-styles-3.2.1" @@ -68735,9 +69807,17 @@ in sources."enquirer-2.3.6" sources."escape-string-regexp-1.0.5" sources."eslint-scope-5.1.1" - sources."eslint-utils-2.1.0" - sources."eslint-visitor-keys-1.3.0" - sources."espree-7.3.0" + (sources."eslint-utils-2.1.0" // { + dependencies = [ + sources."eslint-visitor-keys-1.3.0" + ]; + }) + sources."eslint-visitor-keys-2.0.0" + (sources."espree-7.3.0" // { + dependencies = [ + sources."eslint-visitor-keys-1.3.0" + ]; + }) sources."esprima-4.0.1" (sources."esquery-1.3.1" // { dependencies = [ @@ -68848,7 +69928,7 @@ in sources."@eslint/eslintrc-0.1.3" sources."acorn-7.4.1" sources."acorn-jsx-5.3.1" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-colors-4.1.1" sources."ansi-regex-5.0.0" sources."ansi-styles-3.2.1" @@ -68877,11 +69957,19 @@ in sources."emoji-regex-7.0.3" sources."enquirer-2.3.6" sources."escape-string-regexp-1.0.5" - sources."eslint-7.10.0" + sources."eslint-7.11.0" sources."eslint-scope-5.1.1" - sources."eslint-utils-2.1.0" - sources."eslint-visitor-keys-1.3.0" - sources."espree-7.3.0" + (sources."eslint-utils-2.1.0" // { + dependencies = [ + sources."eslint-visitor-keys-1.3.0" + ]; + }) + sources."eslint-visitor-keys-2.0.0" + (sources."espree-7.3.0" // { + dependencies = [ + sources."eslint-visitor-keys-1.3.0" + ]; + }) sources."esprima-4.0.1" (sources."esquery-1.3.1" // { dependencies = [ @@ -68977,35 +70065,35 @@ in expo-cli = nodeEnv.buildNodePackage { name = "expo-cli"; packageName = "expo-cli"; - version = "3.27.14"; + version = "3.28.0"; src = fetchurl { - url = "https://registry.npmjs.org/expo-cli/-/expo-cli-3.27.14.tgz"; - sha512 = "1/avJnfrvOEM31Bfu/8wSGnSxscxKJ+MusqjTgy7q/LEes8M0VqtdMWb8ZPXJ8weaIEV6o98EGoomkYayJTyJw=="; + url = "https://registry.npmjs.org/expo-cli/-/expo-cli-3.28.0.tgz"; + sha512 = "1fz44bGoM3jfit1gPYW1JuShX2DQva6SHZT1Rnx06UOeWJeofHO0ki/4J3InI8tob+XnktXo3cYW0HEXpJwVGg=="; }; dependencies = [ sources."@babel/code-frame-7.10.4" - sources."@babel/compat-data-7.11.0" + sources."@babel/compat-data-7.12.1" sources."@babel/core-7.9.0" - sources."@babel/generator-7.11.6" + sources."@babel/generator-7.12.1" sources."@babel/helper-annotate-as-pure-7.10.4" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.10.4" sources."@babel/helper-builder-react-jsx-7.10.4" - sources."@babel/helper-builder-react-jsx-experimental-7.11.5" - sources."@babel/helper-compilation-targets-7.10.4" - sources."@babel/helper-create-class-features-plugin-7.10.5" - sources."@babel/helper-create-regexp-features-plugin-7.10.4" + sources."@babel/helper-builder-react-jsx-experimental-7.12.1" + sources."@babel/helper-compilation-targets-7.12.1" + sources."@babel/helper-create-class-features-plugin-7.12.1" + sources."@babel/helper-create-regexp-features-plugin-7.12.1" (sources."@babel/helper-define-map-7.10.5" // { dependencies = [ sources."lodash-4.17.20" ]; }) - sources."@babel/helper-explode-assignable-expression-7.11.4" + sources."@babel/helper-explode-assignable-expression-7.12.1" sources."@babel/helper-function-name-7.10.4" sources."@babel/helper-get-function-arity-7.10.4" sources."@babel/helper-hoist-variables-7.10.4" - sources."@babel/helper-member-expression-to-functions-7.11.0" - sources."@babel/helper-module-imports-7.10.4" - (sources."@babel/helper-module-transforms-7.11.0" // { + sources."@babel/helper-member-expression-to-functions-7.12.1" + sources."@babel/helper-module-imports-7.12.1" + (sources."@babel/helper-module-transforms-7.12.1" // { dependencies = [ sources."lodash-4.17.20" ]; @@ -69017,104 +70105,105 @@ in sources."lodash-4.17.20" ]; }) - sources."@babel/helper-remap-async-to-generator-7.11.4" - sources."@babel/helper-replace-supers-7.10.4" - sources."@babel/helper-simple-access-7.10.4" - sources."@babel/helper-skip-transparent-expression-wrappers-7.11.0" + sources."@babel/helper-remap-async-to-generator-7.12.1" + sources."@babel/helper-replace-supers-7.12.1" + sources."@babel/helper-simple-access-7.12.1" + sources."@babel/helper-skip-transparent-expression-wrappers-7.12.1" sources."@babel/helper-split-export-declaration-7.11.0" sources."@babel/helper-validator-identifier-7.10.4" - sources."@babel/helper-wrap-function-7.10.4" - sources."@babel/helpers-7.10.4" + sources."@babel/helper-validator-option-7.12.1" + sources."@babel/helper-wrap-function-7.12.3" + sources."@babel/helpers-7.12.1" (sources."@babel/highlight-7.10.4" // { dependencies = [ sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.11.5" - sources."@babel/plugin-proposal-async-generator-functions-7.10.5" - sources."@babel/plugin-proposal-class-properties-7.10.4" - sources."@babel/plugin-proposal-dynamic-import-7.10.4" - sources."@babel/plugin-proposal-export-default-from-7.10.4" - sources."@babel/plugin-proposal-export-namespace-from-7.10.4" - sources."@babel/plugin-proposal-json-strings-7.10.4" - sources."@babel/plugin-proposal-logical-assignment-operators-7.11.0" - sources."@babel/plugin-proposal-nullish-coalescing-operator-7.10.4" - sources."@babel/plugin-proposal-numeric-separator-7.10.4" - sources."@babel/plugin-proposal-object-rest-spread-7.11.0" - sources."@babel/plugin-proposal-optional-catch-binding-7.10.4" - sources."@babel/plugin-proposal-optional-chaining-7.11.0" - sources."@babel/plugin-proposal-private-methods-7.10.4" - sources."@babel/plugin-proposal-unicode-property-regex-7.10.4" + sources."@babel/parser-7.12.3" + sources."@babel/plugin-proposal-async-generator-functions-7.12.1" + sources."@babel/plugin-proposal-class-properties-7.12.1" + sources."@babel/plugin-proposal-dynamic-import-7.12.1" + sources."@babel/plugin-proposal-export-default-from-7.12.1" + sources."@babel/plugin-proposal-export-namespace-from-7.12.1" + sources."@babel/plugin-proposal-json-strings-7.12.1" + sources."@babel/plugin-proposal-logical-assignment-operators-7.12.1" + sources."@babel/plugin-proposal-nullish-coalescing-operator-7.12.1" + sources."@babel/plugin-proposal-numeric-separator-7.12.1" + sources."@babel/plugin-proposal-object-rest-spread-7.12.1" + sources."@babel/plugin-proposal-optional-catch-binding-7.12.1" + sources."@babel/plugin-proposal-optional-chaining-7.12.1" + sources."@babel/plugin-proposal-private-methods-7.12.1" + sources."@babel/plugin-proposal-unicode-property-regex-7.12.1" sources."@babel/plugin-syntax-async-generators-7.8.4" - sources."@babel/plugin-syntax-class-properties-7.10.4" + sources."@babel/plugin-syntax-class-properties-7.12.1" sources."@babel/plugin-syntax-dynamic-import-7.8.3" - sources."@babel/plugin-syntax-export-default-from-7.10.4" + sources."@babel/plugin-syntax-export-default-from-7.12.1" sources."@babel/plugin-syntax-export-namespace-from-7.8.3" - sources."@babel/plugin-syntax-flow-7.10.4" + sources."@babel/plugin-syntax-flow-7.12.1" sources."@babel/plugin-syntax-json-strings-7.8.3" - sources."@babel/plugin-syntax-jsx-7.10.4" + sources."@babel/plugin-syntax-jsx-7.12.1" sources."@babel/plugin-syntax-logical-assignment-operators-7.10.4" sources."@babel/plugin-syntax-nullish-coalescing-operator-7.8.3" sources."@babel/plugin-syntax-numeric-separator-7.10.4" sources."@babel/plugin-syntax-object-rest-spread-7.8.3" sources."@babel/plugin-syntax-optional-catch-binding-7.8.3" sources."@babel/plugin-syntax-optional-chaining-7.8.3" - sources."@babel/plugin-syntax-top-level-await-7.10.4" - sources."@babel/plugin-syntax-typescript-7.10.4" - sources."@babel/plugin-transform-arrow-functions-7.10.4" - sources."@babel/plugin-transform-async-to-generator-7.10.4" - sources."@babel/plugin-transform-block-scoped-functions-7.10.4" - sources."@babel/plugin-transform-block-scoping-7.11.1" - sources."@babel/plugin-transform-classes-7.10.4" - sources."@babel/plugin-transform-computed-properties-7.10.4" - sources."@babel/plugin-transform-destructuring-7.10.4" - sources."@babel/plugin-transform-dotall-regex-7.10.4" - sources."@babel/plugin-transform-duplicate-keys-7.10.4" - sources."@babel/plugin-transform-exponentiation-operator-7.10.4" - sources."@babel/plugin-transform-flow-strip-types-7.10.4" - sources."@babel/plugin-transform-for-of-7.10.4" - sources."@babel/plugin-transform-function-name-7.10.4" - sources."@babel/plugin-transform-literals-7.10.4" - sources."@babel/plugin-transform-member-expression-literals-7.10.4" - sources."@babel/plugin-transform-modules-amd-7.10.5" - sources."@babel/plugin-transform-modules-commonjs-7.10.4" - sources."@babel/plugin-transform-modules-systemjs-7.10.5" - sources."@babel/plugin-transform-modules-umd-7.10.4" - sources."@babel/plugin-transform-named-capturing-groups-regex-7.10.4" - sources."@babel/plugin-transform-new-target-7.10.4" - sources."@babel/plugin-transform-object-assign-7.10.4" - sources."@babel/plugin-transform-object-super-7.10.4" - sources."@babel/plugin-transform-parameters-7.10.5" - sources."@babel/plugin-transform-property-literals-7.10.4" - sources."@babel/plugin-transform-react-display-name-7.10.4" - sources."@babel/plugin-transform-react-jsx-7.10.4" - sources."@babel/plugin-transform-react-jsx-source-7.10.5" - sources."@babel/plugin-transform-regenerator-7.10.4" - sources."@babel/plugin-transform-reserved-words-7.10.4" - (sources."@babel/plugin-transform-runtime-7.11.5" // { + sources."@babel/plugin-syntax-top-level-await-7.12.1" + sources."@babel/plugin-syntax-typescript-7.12.1" + sources."@babel/plugin-transform-arrow-functions-7.12.1" + sources."@babel/plugin-transform-async-to-generator-7.12.1" + sources."@babel/plugin-transform-block-scoped-functions-7.12.1" + sources."@babel/plugin-transform-block-scoping-7.12.1" + sources."@babel/plugin-transform-classes-7.12.1" + sources."@babel/plugin-transform-computed-properties-7.12.1" + sources."@babel/plugin-transform-destructuring-7.12.1" + sources."@babel/plugin-transform-dotall-regex-7.12.1" + sources."@babel/plugin-transform-duplicate-keys-7.12.1" + sources."@babel/plugin-transform-exponentiation-operator-7.12.1" + sources."@babel/plugin-transform-flow-strip-types-7.12.1" + sources."@babel/plugin-transform-for-of-7.12.1" + sources."@babel/plugin-transform-function-name-7.12.1" + sources."@babel/plugin-transform-literals-7.12.1" + sources."@babel/plugin-transform-member-expression-literals-7.12.1" + sources."@babel/plugin-transform-modules-amd-7.12.1" + sources."@babel/plugin-transform-modules-commonjs-7.12.1" + sources."@babel/plugin-transform-modules-systemjs-7.12.1" + sources."@babel/plugin-transform-modules-umd-7.12.1" + sources."@babel/plugin-transform-named-capturing-groups-regex-7.12.1" + sources."@babel/plugin-transform-new-target-7.12.1" + sources."@babel/plugin-transform-object-assign-7.12.1" + sources."@babel/plugin-transform-object-super-7.12.1" + sources."@babel/plugin-transform-parameters-7.12.1" + sources."@babel/plugin-transform-property-literals-7.12.1" + sources."@babel/plugin-transform-react-display-name-7.12.1" + sources."@babel/plugin-transform-react-jsx-7.12.1" + sources."@babel/plugin-transform-react-jsx-source-7.12.1" + sources."@babel/plugin-transform-regenerator-7.12.1" + sources."@babel/plugin-transform-reserved-words-7.12.1" + (sources."@babel/plugin-transform-runtime-7.12.1" // { dependencies = [ sources."semver-5.7.1" ]; }) - sources."@babel/plugin-transform-shorthand-properties-7.10.4" - sources."@babel/plugin-transform-spread-7.11.0" - sources."@babel/plugin-transform-sticky-regex-7.10.4" - sources."@babel/plugin-transform-template-literals-7.10.5" - sources."@babel/plugin-transform-typeof-symbol-7.10.4" - sources."@babel/plugin-transform-typescript-7.11.0" - sources."@babel/plugin-transform-unicode-escapes-7.10.4" - sources."@babel/plugin-transform-unicode-regex-7.10.4" - sources."@babel/preset-env-7.11.5" + sources."@babel/plugin-transform-shorthand-properties-7.12.1" + sources."@babel/plugin-transform-spread-7.12.1" + sources."@babel/plugin-transform-sticky-regex-7.12.1" + sources."@babel/plugin-transform-template-literals-7.12.1" + sources."@babel/plugin-transform-typeof-symbol-7.12.1" + sources."@babel/plugin-transform-typescript-7.12.1" + sources."@babel/plugin-transform-unicode-escapes-7.12.1" + sources."@babel/plugin-transform-unicode-regex-7.12.1" + sources."@babel/preset-env-7.12.1" sources."@babel/preset-modules-0.1.4" - sources."@babel/preset-typescript-7.10.4" - sources."@babel/runtime-7.11.2" + sources."@babel/preset-typescript-7.12.1" + sources."@babel/runtime-7.12.1" sources."@babel/template-7.10.4" - (sources."@babel/traverse-7.11.5" // { + (sources."@babel/traverse-7.12.1" // { dependencies = [ sources."lodash-4.17.20" ]; }) - (sources."@babel/types-7.11.5" // { + (sources."@babel/types-7.12.1" // { dependencies = [ sources."lodash-4.17.20" ]; @@ -69125,7 +70214,7 @@ in sources."uuid-3.4.0" ]; }) - (sources."@expo/config-3.3.9" // { + (sources."@expo/config-3.3.10" // { dependencies = [ sources."semver-7.3.2" sources."uuid-3.4.0" @@ -69139,7 +70228,7 @@ in sources."pngjs-5.0.0" ]; }) - (sources."@expo/dev-server-0.1.34" // { + (sources."@expo/dev-server-0.1.35" // { dependencies = [ sources."body-parser-1.19.0" sources."bytes-3.1.0" @@ -69155,8 +70244,8 @@ in sources."statuses-1.5.0" ]; }) - sources."@expo/dev-tools-0.13.52" - sources."@expo/eas-build-job-0.1.0" + sources."@expo/dev-tools-0.13.53" + sources."@expo/eas-build-job-0.1.1" (sources."@expo/image-utils-0.3.7" // { dependencies = [ sources."semver-6.1.1" @@ -69167,7 +70256,7 @@ in sources."json5-1.0.1" ]; }) - sources."@expo/metro-config-0.1.34" + sources."@expo/metro-config-0.1.35" (sources."@expo/ngrok-2.4.3" // { dependencies = [ sources."uuid-3.4.0" @@ -69215,14 +70304,14 @@ in sources."@expo/spawn-async-1.5.0" sources."@expo/traveling-fastlane-darwin-1.15.1" sources."@expo/traveling-fastlane-linux-1.15.1" - (sources."@expo/webpack-config-0.12.38" // { + (sources."@expo/webpack-config-0.12.39" // { dependencies = [ sources."@babel/runtime-7.9.0" sources."is-wsl-2.2.0" sources."react-refresh-0.8.3" ]; }) - (sources."@expo/xdl-58.0.13" // { + (sources."@expo/xdl-58.0.14" // { dependencies = [ sources."chownr-1.1.4" sources."es6-error-4.1.1" @@ -69239,7 +70328,7 @@ in ]; }) sources."mkdirp-1.0.4" - (sources."npm-package-arg-8.0.1" // { + (sources."npm-package-arg-8.1.0" // { dependencies = [ sources."semver-7.3.2" ]; @@ -69397,10 +70486,10 @@ in sources."@types/istanbul-reports-1.1.2" sources."@types/json-schema-7.0.6" sources."@types/keyv-3.1.1" - sources."@types/lodash-4.14.161" + sources."@types/lodash-4.14.162" sources."@types/minimatch-3.0.3" sources."@types/mkdirp-0.5.2" - sources."@types/node-9.6.59" + sources."@types/node-9.6.60" sources."@types/q-1.5.4" sources."@types/responselike-1.0.0" sources."@types/retry-0.12.0" @@ -69424,7 +70513,7 @@ in sources."source-map-0.7.3" ]; }) - sources."@types/yargs-15.0.7" + sources."@types/yargs-15.0.9" sources."@types/yargs-parser-15.0.0" sources."@webassemblyjs/ast-1.9.0" sources."@webassemblyjs/floating-point-hex-parser-1.9.0" @@ -69454,7 +70543,7 @@ in sources."agent-base-6.0.1" sources."agentkeepalive-4.1.3" sources."aggregate-error-3.1.0" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ajv-errors-1.0.1" sources."ajv-keywords-3.5.2" sources."alphanum-sort-1.0.2" @@ -69664,7 +70753,7 @@ in }) sources."camelcase-5.3.1" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001144" + sources."caniuse-lite-1.0.30001148" sources."capture-stack-trace-1.0.1" sources."caseless-0.12.0" (sources."chalk-4.1.0" // { @@ -69678,7 +70767,7 @@ in }) sources."chardet-0.4.2" sources."charenc-0.0.2" - sources."chokidar-3.4.2" + sources."chokidar-3.4.3" sources."chownr-2.0.0" sources."chrome-trace-event-1.0.2" sources."ci-info-1.6.0" @@ -69709,7 +70798,7 @@ in sources."clean-webpack-plugin-3.0.0" sources."cli-boxes-2.2.1" sources."cli-cursor-2.1.0" - sources."cli-spinners-2.4.0" + sources."cli-spinners-2.5.0" sources."cli-table3-0.6.0" sources."cli-width-2.2.1" (sources."clipboardy-2.3.0" // { @@ -69728,10 +70817,10 @@ in }) sources."code-point-at-1.1.0" sources."collection-visit-1.0.0" - sources."color-3.1.2" + sources."color-3.1.3" sources."color-convert-1.9.3" sources."color-name-1.1.3" - sources."color-string-1.5.3" + sources."color-string-1.5.4" sources."colorette-1.2.1" sources."colors-1.4.0" sources."combined-stream-1.0.8" @@ -69849,7 +70938,7 @@ in sources."cyclist-1.0.1" sources."dashdash-1.14.1" sources."dateformat-3.0.3" - sources."dayjs-1.9.1" + sources."dayjs-1.9.3" sources."debug-4.3.0" sources."debuglog-1.0.1" sources."decache-4.4.0" @@ -69888,7 +70977,7 @@ in (sources."devcert-1.1.3" // { dependencies = [ sources."@types/glob-5.0.36" - sources."@types/node-8.10.64" + sources."@types/node-8.10.65" sources."debug-3.2.6" sources."rimraf-2.7.1" sources."sudo-prompt-8.2.5" @@ -69918,7 +71007,7 @@ in sources."duplexify-3.7.1" sources."ecc-jsbn-0.1.2" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.3.578" + sources."electron-to-chromium-1.3.582" (sources."elliptic-6.5.3" // { dependencies = [ sources."bn.js-4.11.9" @@ -69938,7 +71027,7 @@ in sources."memory-fs-0.5.0" ]; }) - sources."entities-2.0.3" + sources."entities-2.1.0" sources."env-editor-0.4.1" sources."env-paths-2.2.0" sources."envinfo-7.5.0" @@ -69960,7 +71049,7 @@ in }) sources."es-to-primitive-1.2.1" sources."es6-error-3.2.0" - sources."escalade-3.1.0" + sources."escalade-3.1.1" sources."escape-html-1.0.3" sources."escape-string-regexp-1.0.5" sources."eslint-scope-4.0.3" @@ -70001,7 +71090,7 @@ in sources."ms-2.0.0" ]; }) - (sources."expo-pwa-0.0.44" // { + (sources."expo-pwa-0.0.45" // { dependencies = [ sources."commander-2.20.0" ]; @@ -70187,7 +71276,7 @@ in sources."hex-color-regex-1.1.0" sources."hmac-drbg-1.0.1" sources."hoek-4.2.1" - sources."hosted-git-info-3.0.5" + sources."hosted-git-info-3.0.7" sources."hpack.js-2.1.6" sources."hsl-regex-1.0.0" sources."hsla-regex-1.0.0" @@ -70377,7 +71466,6 @@ in sources."last-call-webpack-plugin-3.0.0" sources."latest-version-5.1.0" sources."leven-3.1.0" - sources."levenary-1.1.1" (sources."load-bmfont-1.4.1" // { dependencies = [ sources."mime-1.6.0" @@ -70422,7 +71510,7 @@ in sources."semver-5.7.1" ]; }) - (sources."make-fetch-happen-8.0.9" // { + (sources."make-fetch-happen-8.0.10" // { dependencies = [ sources."minipass-3.1.3" ]; @@ -70526,7 +71614,7 @@ in sources."mute-stream-0.0.7" sources."mv-2.1.1" sources."mz-2.7.0" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."nanomatch-1.2.13" sources."native-url-0.2.6" sources."ncp-2.0.0" @@ -70537,9 +71625,9 @@ in sources."no-case-3.0.3" sources."node-fetch-2.6.1" sources."node-forge-0.7.6" - (sources."node-gyp-7.1.0" // { + (sources."node-gyp-7.1.2" // { dependencies = [ - sources."rimraf-2.7.1" + sources."rimraf-3.0.2" sources."semver-7.3.2" sources."which-2.0.2" ]; @@ -70553,8 +71641,8 @@ in sources."punycode-1.4.1" ]; }) - sources."node-releases-1.1.61" - sources."nopt-4.0.3" + sources."node-releases-1.1.63" + sources."nopt-5.0.0" sources."normalize-path-3.0.0" sources."normalize-url-3.3.0" sources."npm-bundled-1.1.1" @@ -70572,14 +71660,14 @@ in sources."npm-packlist-2.1.2" (sources."npm-pick-manifest-6.1.0" // { dependencies = [ - sources."npm-package-arg-8.0.1" + sources."npm-package-arg-8.1.0" sources."semver-7.3.2" ]; }) - (sources."npm-registry-fetch-8.1.4" // { + (sources."npm-registry-fetch-8.1.5" // { dependencies = [ sources."minipass-3.1.3" - sources."npm-package-arg-8.0.1" + sources."npm-package-arg-8.1.0" sources."semver-7.3.2" ]; }) @@ -70678,7 +71766,7 @@ in dependencies = [ sources."minipass-3.1.3" sources."mkdirp-1.0.4" - sources."npm-package-arg-8.0.1" + sources."npm-package-arg-8.1.0" sources."rimraf-3.0.2" sources."semver-7.3.2" ]; @@ -70874,7 +71962,11 @@ in sources."postcss-value-parser-4.1.0" sources."prepend-http-1.0.4" sources."pretty-bytes-5.4.1" - sources."pretty-error-2.1.1" + (sources."pretty-error-2.1.2" // { + dependencies = [ + sources."lodash-4.17.20" + ]; + }) (sources."pretty-format-25.5.0" // { dependencies = [ sources."ansi-regex-5.0.0" @@ -70997,7 +72089,7 @@ in ]; }) sources."readdir-scoped-modules-1.1.0" - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."recursive-readdir-2.2.2" sources."regenerate-1.4.1" sources."regenerate-unicode-properties-8.2.0" @@ -71021,13 +72113,13 @@ in sources."relateurl-0.2.7" sources."remove-trailing-separator-1.1.0" sources."remove-trailing-slash-0.1.1" - (sources."renderkid-2.0.3" // { + (sources."renderkid-2.0.4" // { dependencies = [ sources."ansi-regex-2.1.1" (sources."dom-serializer-0.2.2" // { dependencies = [ sources."domelementtype-2.0.2" - sources."entities-2.0.3" + sources."entities-2.1.0" ]; }) sources."domelementtype-1.3.1" @@ -71035,6 +72127,7 @@ in sources."domutils-1.7.0" sources."entities-1.1.2" sources."htmlparser2-3.10.1" + sources."lodash-4.17.20" sources."readable-stream-3.6.0" sources."strip-ansi-3.0.1" ]; @@ -71289,7 +72382,7 @@ in dependencies = [ sources."chalk-2.4.2" sources."css-select-2.1.0" - sources."css-what-3.4.1" + sources."css-what-3.4.2" (sources."dom-serializer-0.2.2" // { dependencies = [ sources."domelementtype-2.0.2" @@ -71360,7 +72453,7 @@ in sources."tree-kill-1.2.2" sources."ts-invariant-0.4.4" sources."ts-pnp-1.2.0" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tty-browserify-0.0.0" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" @@ -71406,9 +72499,10 @@ in ]; }) sources."url-join-4.0.0" - (sources."url-loader-4.1.0" // { + (sources."url-loader-4.1.1" // { dependencies = [ sources."loader-utils-2.0.0" + sources."schema-utils-3.0.0" ]; }) sources."url-parse-1.4.7" @@ -71699,7 +72793,7 @@ in sha1 = "81f5f98043cc2517053f96ba5d61ef5db430c010"; }; dependencies = [ - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-escapes-1.4.0" sources."ansi-regex-2.1.1" sources."ansi-styles-2.2.1" @@ -72048,7 +73142,7 @@ in sources."through-2.3.8" sources."tmp-0.0.33" sources."trim-newlines-3.0.0" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."type-fest-0.11.0" sources."validate-npm-package-license-3.0.4" sources."which-2.0.2" @@ -72269,7 +73363,7 @@ in }) sources."ms-2.0.0" sources."mute-stream-0.0.8" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."nanomatch-1.2.13" sources."nconf-0.10.0" sources."ncp-0.4.2" @@ -72474,6 +73568,40 @@ in bypassCache = true; reconstructLock = true; }; + fx = nodeEnv.buildNodePackage { + name = "fx"; + packageName = "fx"; + version = "20.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/fx/-/fx-20.0.2.tgz"; + sha512 = "BgZNylpsDf5V0c4DwjWnre2dld9YbEbdNUnXzOC2WJv4R/AnJG8cu7mBERhkqxue3S3hgmJr3lqoqeKb2PedGQ=="; + }; + dependencies = [ + sources."@medv/blessed-2.0.1" + sources."ansi-regex-5.0.0" + sources."ansi-styles-4.3.0" + sources."chalk-4.1.0" + sources."color-convert-2.0.1" + sources."color-name-1.1.4" + sources."emoji-regex-8.0.0" + sources."has-flag-4.0.0" + sources."indent-string-4.0.0" + sources."is-fullwidth-code-point-3.0.0" + sources."lossless-json-1.0.4" + sources."string-width-4.2.0" + sources."strip-ansi-6.0.0" + sources."supports-color-7.2.0" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "Command-line JSON viewer"; + homepage = https://fx.wtf/; + license = "MIT"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; get-graphql-schema = nodeEnv.buildNodePackage { name = "get-graphql-schema"; packageName = "get-graphql-schema"; @@ -72570,7 +73698,7 @@ in sources."is-my-ip-valid-1.0.0" sources."is-my-json-valid-2.20.5" sources."is-property-1.0.2" - sources."is-valid-domain-0.0.15" + sources."is-valid-domain-0.0.16" sources."json-buffer-2.0.11" sources."jsonpointer-4.1.0" sources."kvgraph-0.1.0" @@ -72591,7 +73719,7 @@ in sources."multiserver-3.6.0" sources."multiserver-address-1.0.1" sources."multiserver-scopes-1.0.0" - sources."muxrpc-6.5.0" + sources."muxrpc-6.5.1" sources."nearley-2.19.7" sources."node-gyp-build-4.2.3" sources."node-polyglot-1.0.0" @@ -72762,7 +73890,7 @@ in sources."@szmarczak/http-timer-1.1.2" sources."@types/minimist-1.2.0" sources."@types/normalize-package-data-2.4.0" - sources."ajv-6.12.5" + sources."ajv-6.12.6" (sources."ansi-align-3.0.0" // { dependencies = [ sources."ansi-regex-4.1.0" @@ -72776,7 +73904,7 @@ in sources."ansi-regex-5.0.0" sources."ansi-styles-4.3.0" sources."arrify-1.0.1" - sources."atomically-1.3.2" + sources."atomically-1.5.0" (sources."boxen-4.2.0" // { dependencies = [ sources."chalk-3.0.0" @@ -72795,7 +73923,7 @@ in sources."ci-info-2.0.0" sources."cli-boxes-2.2.1" sources."cli-cursor-3.1.0" - sources."cli-spinners-2.4.0" + sources."cli-spinners-2.5.0" sources."cli-width-3.0.0" sources."clone-1.0.4" sources."clone-response-1.0.2" @@ -72982,7 +74110,7 @@ in sources."tmp-0.0.33" sources."to-readable-stream-1.0.0" sources."trim-newlines-3.0.0" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."type-fest-0.11.0" sources."typedarray-to-buffer-3.1.5" sources."unique-string-2.0.0" @@ -73034,7 +74162,7 @@ in sources."supports-color-5.5.0" ]; }) - sources."@exodus/schemasafe-1.0.0-rc.2" + sources."@exodus/schemasafe-1.0.0-rc.3" sources."@graphql-cli/common-4.1.0" sources."@graphql-cli/init-4.1.0" sources."@graphql-tools/delegate-6.2.4" @@ -73054,11 +74182,11 @@ in sources."@nodelib/fs.walk-1.2.4" sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."@types/parse-json-4.0.0" sources."@types/websocket-1.0.1" sources."aggregate-error-3.1.0" - sources."ajv-6.12.5" + sources."ajv-6.12.6" (sources."ansi-escapes-4.3.1" // { dependencies = [ sources."type-fest-0.11.0" @@ -73093,7 +74221,7 @@ in sources."callsites-3.1.0" (sources."camel-case-4.1.1" // { dependencies = [ - sources."tslib-1.14.0" + sources."tslib-1.14.1" ]; }) sources."camelcase-5.3.1" @@ -73103,7 +74231,7 @@ in sources."chownr-2.0.0" sources."clean-stack-2.2.0" sources."cli-cursor-2.1.0" - sources."cli-spinners-2.4.0" + sources."cli-spinners-2.5.0" sources."cli-width-3.0.0" (sources."cliui-6.0.0" // { dependencies = [ @@ -73161,7 +74289,7 @@ in sources."es6-iterator-2.0.3" sources."es6-promise-3.3.1" sources."es6-symbol-3.1.3" - sources."escalade-3.1.0" + sources."escalade-3.1.1" sources."escape-string-regexp-1.0.5" sources."esprima-4.0.1" sources."eventemitter3-3.1.2" @@ -73311,7 +74439,7 @@ in }) (sources."lower-case-2.0.1" // { dependencies = [ - sources."tslib-1.14.0" + sources."tslib-1.14.1" ]; }) sources."lowercase-keys-1.0.1" @@ -73338,7 +74466,7 @@ in sources."nice-try-1.0.5" (sources."no-case-3.0.3" // { dependencies = [ - sources."tslib-1.14.0" + sources."tslib-1.14.1" ]; }) sources."node-emoji-1.10.0" @@ -73350,14 +74478,14 @@ in sources."normalize-url-4.5.0" sources."npm-run-path-2.0.2" sources."oas-kit-common-1.0.8" - sources."oas-linter-3.2.0" - (sources."oas-resolver-2.5.1" // { + sources."oas-linter-3.2.1" + (sources."oas-resolver-2.5.2" // { dependencies = [ sources."yargs-15.4.1" ]; }) sources."oas-schema-walker-1.1.5" - sources."oas-validator-5.0.2" + sources."oas-validator-5.0.3" sources."oauth-sign-0.9.0" sources."object-inspect-1.8.0" sources."object-is-1.1.3" @@ -73402,7 +74530,7 @@ in sources."parse-json-5.1.0" (sources."pascal-case-3.1.1" // { dependencies = [ - sources."tslib-1.14.0" + sources."tslib-1.14.1" ]; }) sources."passwd-user-3.0.0" @@ -73440,7 +74568,7 @@ in sources."run-parallel-1.1.9" (sources."rxjs-6.6.3" // { dependencies = [ - sources."tslib-1.14.0" + sources."tslib-1.14.1" ]; }) sources."safe-buffer-5.2.1" @@ -73483,7 +74611,7 @@ in sources."strip-json-comments-2.0.1" sources."subscriptions-transport-ws-0.9.18" sources."supports-color-7.2.0" - (sources."swagger2openapi-7.0.2" // { + (sources."swagger2openapi-7.0.3" // { dependencies = [ sources."yargs-15.4.1" ]; @@ -73540,11 +74668,11 @@ in (sources."yargs-16.0.3" // { dependencies = [ sources."ansi-regex-5.0.0" - sources."cliui-7.0.1" + sources."cliui-7.0.3" sources."strip-ansi-6.0.0" sources."wrap-ansi-7.0.0" - sources."y18n-5.0.2" - sources."yargs-parser-20.2.1" + sources."y18n-5.0.4" + sources."yargs-parser-20.2.3" ]; }) sources."yargs-parser-18.1.3" @@ -73825,6 +74953,24 @@ in bypassCache = true; reconstructLock = true; }; + makam = nodeEnv.buildNodePackage { + name = "makam"; + packageName = "makam"; + version = "0.7.37"; + src = fetchurl { + url = "https://registry.npmjs.org/makam/-/makam-0.7.37.tgz"; + sha512 = "6DGx7FnmgAf+dYXrptwmgC6WDR0+emgM1jMscY/3yitXP3IYq0BvFE2UKq66P16nkHcQHmENK6xTt8M3Z+rdBw=="; + }; + buildInputs = globalBuildInputs; + meta = { + description = "The Makam metalanguage -- a tool for rapid language prototyping"; + homepage = http://astampoulis.github.io/makam/; + license = "GPL-3.0"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; gtop = nodeEnv.buildNodePackage { name = "gtop"; packageName = "gtop"; @@ -73897,7 +75043,7 @@ in sources."supports-color-7.2.0" ]; }) - sources."systeminformation-4.27.7" + sources."systeminformation-4.27.10" sources."term-canvas-0.0.5" sources."type-fest-0.11.0" sources."wordwrap-0.0.3" @@ -74184,7 +75330,7 @@ in }) sources."ms-2.0.0" sources."mute-stdout-1.0.1" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."nanomatch-1.2.13" sources."next-tick-1.0.0" sources."normalize-package-data-2.5.0" @@ -74804,7 +75950,7 @@ in sources."param-case-2.1.1" sources."relateurl-0.2.7" sources."source-map-0.6.1" - sources."uglify-js-3.11.1" + sources."uglify-js-3.11.3" sources."upper-case-1.1.3" ]; buildInputs = globalBuildInputs; @@ -74826,7 +75972,7 @@ in sha512 = "VWKrljlwF8tEKH48YPfC30zYKhrsMqm70d7vXswivEqd3DSva8ZlIzfeCa3YWFEFRIIhiXKgKurlqEpCtYMCAA=="; }; dependencies = [ - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-styles-4.3.0" sources."asn1-0.2.4" sources."assert-plus-1.0.0" @@ -75009,6 +76155,222 @@ in bypassCache = true; reconstructLock = true; }; + inliner = nodeEnv.buildNodePackage { + name = "inliner"; + packageName = "inliner"; + version = "1.13.1"; + src = fetchurl { + url = "https://registry.npmjs.org/inliner/-/inliner-1.13.1.tgz"; + sha1 = "e5002981ebf50e9d9f313711481cff122d4f3fcb"; + }; + dependencies = [ + sources."ajv-6.12.6" + sources."align-text-0.1.4" + sources."ansi-escapes-1.4.0" + sources."ansi-regex-2.1.1" + sources."ansi-styles-2.2.1" + sources."argparse-1.0.10" + sources."asap-2.0.6" + sources."asn1-0.2.4" + sources."assert-plus-1.0.0" + sources."asynckit-0.4.0" + sources."aws-sign2-0.7.0" + sources."aws4-1.10.1" + sources."bcrypt-pbkdf-1.0.2" + sources."boolbase-1.0.0" + sources."camelcase-1.2.1" + sources."caseless-0.12.0" + sources."center-align-0.1.3" + sources."chalk-1.1.3" + sources."charset-1.0.1" + sources."cheerio-0.19.0" + sources."clap-1.2.3" + sources."cliui-2.1.0" + sources."coa-1.0.4" + sources."colors-1.1.2" + sources."combined-stream-1.0.8" + (sources."configstore-1.4.0" // { + dependencies = [ + sources."uuid-2.0.3" + ]; + }) + sources."core-util-is-1.0.2" + sources."css-select-1.0.0" + sources."css-what-1.0.0" + sources."csso-2.0.0" + sources."dashdash-1.14.1" + sources."debug-2.6.9" + sources."decamelize-1.2.0" + sources."deep-extend-0.6.0" + sources."delayed-stream-1.0.0" + sources."dom-serializer-0.1.1" + sources."domelementtype-1.3.1" + sources."domhandler-2.3.0" + sources."domutils-1.4.3" + (sources."duplexify-3.7.1" // { + dependencies = [ + sources."isarray-1.0.0" + sources."readable-stream-2.3.7" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + sources."ecc-jsbn-0.1.2" + sources."end-of-stream-1.4.4" + sources."entities-1.1.2" + sources."es6-promise-2.3.0" + sources."escape-string-regexp-1.0.5" + sources."esprima-2.7.3" + sources."extend-3.0.2" + sources."extsprintf-1.3.0" + sources."fast-deep-equal-3.1.3" + sources."fast-json-stable-stringify-2.1.0" + sources."forever-agent-0.6.1" + sources."form-data-2.3.3" + sources."getpass-0.1.7" + (sources."got-3.3.1" // { + dependencies = [ + sources."object-assign-3.0.0" + ]; + }) + sources."graceful-fs-4.2.4" + sources."har-schema-2.0.0" + sources."har-validator-5.1.5" + sources."has-ansi-2.0.0" + (sources."htmlparser2-3.8.3" // { + dependencies = [ + sources."domutils-1.5.1" + sources."entities-1.0.0" + ]; + }) + sources."http-signature-1.2.0" + sources."iconv-lite-0.4.24" + sources."imurmurhash-0.1.4" + sources."infinity-agent-2.0.3" + sources."inherits-2.0.4" + sources."ini-1.3.5" + sources."is-buffer-1.1.6" + sources."is-finite-1.1.0" + sources."is-npm-1.0.0" + sources."is-redirect-1.0.0" + sources."is-stream-1.1.0" + sources."is-typedarray-1.0.0" + sources."isarray-0.0.1" + sources."isstream-0.1.2" + sources."js-yaml-3.6.1" + sources."jsbn-0.1.1" + sources."jschardet-1.6.0" + sources."json-schema-0.2.3" + sources."json-schema-traverse-0.4.1" + sources."json-stringify-safe-5.0.1" + sources."jsprim-1.4.1" + sources."kind-of-3.2.2" + sources."latest-version-1.0.1" + sources."lazy-cache-1.0.4" + sources."lodash-3.10.1" + sources."lodash._arrayeach-3.0.0" + sources."lodash._baseassign-3.2.0" + sources."lodash._basecopy-3.0.1" + sources."lodash._baseeach-3.0.4" + sources."lodash._bindcallback-3.0.1" + sources."lodash._createassigner-3.1.1" + sources."lodash._getnative-3.9.1" + sources."lodash._isiterateecall-3.0.9" + sources."lodash.assign-3.2.0" + sources."lodash.defaults-3.1.2" + sources."lodash.foreach-3.0.3" + sources."lodash.isarguments-3.1.0" + sources."lodash.isarray-3.0.4" + sources."lodash.keys-3.1.2" + sources."lodash.restparam-3.6.1" + sources."longest-1.0.1" + sources."lowercase-keys-1.0.1" + sources."mime-1.6.0" + sources."mime-db-1.44.0" + sources."mime-types-2.1.27" + sources."minimist-1.2.5" + sources."mkdirp-0.5.5" + sources."ms-2.0.0" + sources."nested-error-stacks-1.0.2" + sources."nth-check-1.0.2" + sources."oauth-sign-0.9.0" + sources."object-assign-4.1.1" + sources."once-1.4.0" + sources."os-homedir-1.0.2" + sources."os-tmpdir-1.0.2" + sources."osenv-0.1.5" + sources."package-json-1.2.0" + sources."performance-now-2.1.0" + sources."pinkie-2.0.4" + sources."pinkie-promise-2.0.1" + sources."prepend-http-1.0.4" + sources."process-nextick-args-2.0.1" + sources."promise-7.3.1" + sources."psl-1.8.0" + sources."punycode-2.1.1" + sources."q-1.5.1" + sources."qs-6.5.2" + sources."rc-1.2.8" + (sources."read-all-stream-3.1.0" // { + dependencies = [ + sources."isarray-1.0.0" + sources."readable-stream-2.3.7" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + sources."readable-stream-1.1.14" + sources."registry-url-3.1.0" + sources."repeat-string-1.6.1" + sources."repeating-1.1.3" + sources."request-2.88.2" + sources."right-align-0.1.3" + sources."safe-buffer-5.2.1" + sources."safer-buffer-2.1.2" + sources."sax-1.2.4" + sources."semver-5.7.1" + sources."semver-diff-2.1.0" + sources."slide-1.1.6" + sources."source-map-0.5.7" + sources."sprintf-js-1.0.3" + sources."sshpk-1.16.1" + sources."stream-shift-1.0.1" + sources."string-length-1.0.1" + sources."string_decoder-0.10.31" + sources."strip-ansi-3.0.1" + sources."strip-json-comments-2.0.1" + sources."supports-color-2.0.0" + sources."svgo-0.6.6" + sources."then-fs-2.0.0" + sources."timed-out-2.0.0" + sources."tough-cookie-2.5.0" + sources."tunnel-agent-0.6.0" + sources."tweetnacl-0.14.5" + sources."uglify-js-2.8.29" + sources."uglify-to-browserify-1.0.2" + sources."update-notifier-0.5.0" + sources."uri-js-4.4.0" + sources."util-deprecate-1.0.2" + sources."uuid-3.4.0" + sources."verror-1.10.0" + sources."whet.extend-0.9.9" + sources."window-size-0.1.0" + sources."wordwrap-0.0.2" + sources."wrappy-1.0.2" + sources."write-file-atomic-1.3.4" + sources."xdg-basedir-2.0.0" + sources."yargs-3.10.0" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "Utility to inline images, CSS and JavaScript for a web page - useful for mobile sites"; + homepage = http://github.com/remy/inliner; + license = "MIT"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; imapnotify = nodeEnv.buildNodePackage { name = "imapnotify"; packageName = "imapnotify"; @@ -75043,7 +76405,7 @@ in }) sources."moment-2.29.1" sources."mv-2.1.1" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."ncp-2.0.0" sources."once-1.4.0" sources."optimist-0.6.1" @@ -75108,7 +76470,7 @@ in sha512 = "Oac190s8AGYOYDvAP7PLNFm3gA+dtSoHl5yYGf9sgvMB+I8bRPfSNI6q4kra1QubpN5+/ARfGjGjAFUu10QsIg=="; }; dependencies = [ - sources."@types/jquery-3.5.2" + sources."@types/jquery-3.5.3" sources."@types/sizzle-2.3.2" sources."balanced-match-1.0.0" sources."brace-expansion-1.1.11" @@ -75135,7 +76497,7 @@ in sources."once-1.4.0" sources."os-homedir-1.0.2" sources."path-is-absolute-1.0.1" - sources."prismjs-1.21.0" + sources."prismjs-1.22.0" sources."rimraf-2.7.1" sources."select-1.1.2" sources."tiny-emitter-2.1.0" @@ -75173,13 +76535,14 @@ in sources."@ionic/utils-stream-2.0.5" sources."@ionic/utils-subprocess-1.0.13" sources."@ionic/utils-terminal-1.1.2" - sources."agent-base-4.3.0" + sources."@tootallnate/once-1.1.2" + sources."agent-base-6.0.1" sources."ansi-escapes-3.2.0" sources."ansi-regex-4.1.0" sources."ansi-styles-3.2.1" - (sources."ast-types-0.14.2" // { + (sources."ast-types-0.13.4" // { dependencies = [ - sources."tslib-2.0.2" + sources."tslib-2.0.3" ]; }) sources."astral-regex-2.0.0" @@ -75198,7 +76561,6 @@ in sources."chownr-1.1.4" sources."cli-cursor-2.1.0" sources."cli-width-3.0.0" - sources."co-4.6.0" sources."color-convert-1.9.3" sources."color-name-1.1.3" sources."combined-stream-1.0.8" @@ -75207,10 +76569,10 @@ in sources."cookiejar-2.1.2" sources."core-util-is-1.0.2" sources."cross-spawn-7.0.3" - sources."data-uri-to-buffer-1.2.0" + sources."data-uri-to-buffer-3.0.1" sources."debug-4.3.0" sources."deep-is-0.1.3" - sources."degenerator-1.0.4" + sources."degenerator-2.2.0" sources."delayed-stream-1.0.0" sources."depd-1.1.2" sources."diff-4.0.2" @@ -75224,15 +76586,9 @@ in sources."elementtree-0.1.7" sources."emoji-regex-7.0.3" sources."end-of-stream-1.4.4" - sources."es6-promise-4.2.8" - sources."es6-promisify-5.0.0" sources."escape-string-regexp-1.0.5" - (sources."escodegen-1.14.3" // { - dependencies = [ - sources."esprima-4.0.1" - ]; - }) - sources."esprima-3.1.3" + sources."escodegen-1.14.3" + sources."esprima-4.0.1" sources."estraverse-4.3.0" sources."esutils-2.0.3" (sources."execa-1.0.0" // { @@ -75245,11 +76601,10 @@ in sources."which-1.3.1" ]; }) - sources."extend-3.0.2" sources."external-editor-3.1.0" sources."fast-levenshtein-2.0.6" sources."figures-3.2.0" - sources."file-uri-to-path-1.0.0" + sources."file-uri-to-path-2.0.0" sources."form-data-2.5.1" sources."formidable-1.2.2" sources."fs-extra-8.1.0" @@ -75263,30 +76618,13 @@ in ]; }) sources."get-stream-4.1.0" - (sources."get-uri-2.0.4" // { - dependencies = [ - sources."debug-2.6.9" - sources."ms-2.0.0" - sources."readable-stream-2.3.7" - sources."safe-buffer-5.1.2" - sources."string_decoder-1.1.1" - ]; - }) + sources."get-uri-3.0.2" sources."glob-7.1.6" sources."graceful-fs-4.2.4" sources."has-flag-4.0.0" sources."http-errors-1.7.3" - (sources."http-proxy-agent-2.1.0" // { - dependencies = [ - sources."debug-3.1.0" - sources."ms-2.0.0" - ]; - }) - (sources."https-proxy-agent-3.0.1" // { - dependencies = [ - sources."debug-3.2.6" - ]; - }) + sources."http-proxy-agent-4.0.1" + sources."https-proxy-agent-5.0.0" sources."iconv-lite-0.4.24" sources."imurmurhash-0.1.4" sources."inflight-1.0.6" @@ -75367,13 +76705,13 @@ in sources."os-name-3.1.0" sources."os-tmpdir-1.0.2" sources."p-finally-1.0.0" - sources."pac-proxy-agent-3.0.1" - sources."pac-resolver-3.0.0" + sources."pac-proxy-agent-4.1.0" + sources."pac-resolver-4.1.0" sources."path-is-absolute-1.0.1" sources."path-key-3.1.1" sources."prelude-ls-1.1.2" sources."process-nextick-args-2.0.1" - sources."proxy-agent-3.1.1" + sources."proxy-agent-4.0.0" sources."proxy-from-env-1.1.0" sources."pump-3.0.0" sources."qs-6.9.4" @@ -75401,12 +76739,8 @@ in ]; }) sources."smart-buffer-4.1.0" - sources."socks-2.3.3" - (sources."socks-proxy-agent-4.0.2" // { - dependencies = [ - sources."agent-base-4.2.1" - ]; - }) + sources."socks-2.4.4" + sources."socks-proxy-agent-5.0.0" sources."source-map-0.6.1" sources."split2-3.2.2" sources."ssh-config-1.1.6" @@ -75432,7 +76766,7 @@ in }) sources."strip-eof-1.0.0" sources."superagent-4.1.0" - (sources."superagent-proxy-2.0.0" // { + (sources."superagent-proxy-2.1.0" // { dependencies = [ sources."debug-3.2.6" ]; @@ -75441,11 +76775,10 @@ in sources."tar-4.4.13" sources."through-2.3.8" sources."through2-3.0.2" - sources."thunkify-2.1.2" sources."tmp-0.0.33" sources."toidentifier-1.0.0" sources."tree-kill-1.2.2" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."type-check-0.3.2" sources."type-fest-0.11.0" sources."typedarray-to-buffer-3.1.5" @@ -75490,7 +76823,7 @@ in sources."@josh-brown/vector-3.4.0" sources."JSONStream-1.3.5" sources."abbrev-1.1.1" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."amdefine-1.0.1" sources."ansi-regex-5.0.0" sources."ansi-styles-3.2.1" @@ -75645,7 +76978,7 @@ in sources."minizlib-1.3.3" sources."mkdirp-1.0.4" sources."ms-2.0.0" - sources."nan-2.14.1" + sources."nan-2.14.2" (sources."node-gyp-4.0.0" // { dependencies = [ sources."mkdirp-0.5.5" @@ -75775,7 +77108,7 @@ in sources."tough-cookie-2.5.0" sources."traverse-0.3.9" sources."ts-process-promises-1.0.2" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."ttf2woff-2.0.2" sources."ttf2woff2-3.0.0" sources."tunnel-agent-0.6.0" @@ -75799,7 +77132,7 @@ in sources."color-name-1.1.4" sources."has-flag-4.0.0" sources."supports-color-7.2.0" - sources."tslib-2.0.2" + sources."tslib-2.0.3" ]; }) sources."verror-1.10.0" @@ -75959,10 +77292,10 @@ in joplin = nodeEnv.buildNodePackage { name = "joplin"; packageName = "joplin"; - version = "1.2.2"; + version = "1.2.3"; src = fetchurl { - url = "https://registry.npmjs.org/joplin/-/joplin-1.2.2.tgz"; - sha512 = "cJ5dFzh620xT02z0nW5T9YTA4cIrvLOPoths3hHaazhBCpm4m+GIV9YdwKZsb+QQ4+Wrsh4T39X3O6ncwL4RmQ=="; + url = "https://registry.npmjs.org/joplin/-/joplin-1.2.3.tgz"; + sha512 = "oXopPtdqjEGhjeDjhULGbgZ47+auGaZIhWwgKSnYmrw47scWgXIlNztwFaH4xyTRsm+mCJ/WwPTruloNfTMQhw=="; }; dependencies = [ sources."@cronvel/get-pixels-3.4.0" @@ -75976,7 +77309,7 @@ in ]; }) sources."acorn-walk-6.2.0" - sources."ajv-6.12.5" + sources."ajv-6.12.6" (sources."ansi-escape-sequences-4.1.0" // { dependencies = [ sources."array-back-3.1.0" @@ -76011,7 +77344,7 @@ in sources."async-mutex-0.1.4" sources."asynckit-0.4.0" sources."atob-2.1.2" - (sources."aws-sdk-2.769.0" // { + (sources."aws-sdk-2.773.0" // { dependencies = [ sources."sax-1.2.1" sources."uuid-3.3.2" @@ -76078,10 +77411,10 @@ in sources."cliss-0.0.2" sources."code-point-at-1.1.0" sources."collection-visit-1.0.0" - sources."color-3.1.2" + sources."color-3.1.3" sources."color-convert-1.9.3" sources."color-name-1.1.3" - sources."color-string-1.5.3" + sources."color-string-1.5.4" sources."combined-stream-1.0.8" sources."command-line-usage-4.1.0" sources."commander-2.17.1" @@ -76128,7 +77461,7 @@ in (sources."dom-serializer-0.2.2" // { dependencies = [ sources."domelementtype-2.0.2" - sources."entities-2.0.3" + sources."entities-2.1.0" ]; }) sources."domelementtype-1.3.1" @@ -76255,7 +77588,7 @@ in sources."domelementtype-2.0.2" sources."domhandler-3.3.0" sources."domutils-2.4.2" - sources."entities-2.0.3" + sources."entities-2.1.0" ]; }) sources."http-errors-1.8.0" @@ -76584,7 +77917,7 @@ in sources."is-fullwidth-code-point-2.0.0" ]; }) - sources."slug-3.3.5" + sources."slug-3.5.1" (sources."snapdragon-0.8.2" // { dependencies = [ sources."define-property-0.2.5" @@ -76689,7 +78022,7 @@ in sources."q-0.9.7" ]; }) - sources."terminal-kit-1.43.0" + sources."terminal-kit-1.44.0" (sources."tkwidgets-0.5.26" // { dependencies = [ sources."is-fullwidth-code-point-2.0.0" @@ -76873,7 +78206,7 @@ in sha512 = "znR99e1BHeyEkSvgDDpX0sTiTu+8aQyDl9DawrkOGZTTW8hv0deIFXx87114zJ7gRaDZKVQD/4tr1ifmJp9xhQ=="; }; dependencies = [ - sources."@babel/parser-7.11.5" + sources."@babel/parser-7.12.3" sources."argparse-1.0.10" sources."bluebird-3.7.2" sources."catharsis-0.8.11" @@ -76926,7 +78259,7 @@ in (sources."dom-serializer-0.2.2" // { dependencies = [ sources."domelementtype-2.0.2" - sources."entities-2.0.3" + sources."entities-2.1.0" ]; }) sources."domelementtype-1.3.1" @@ -77348,7 +78681,7 @@ in sources."bytes-3.1.0" sources."callsite-1.0.0" sources."camelcase-5.3.1" - sources."chokidar-3.4.2" + sources."chokidar-3.4.3" sources."cliui-6.0.0" sources."color-convert-2.0.1" sources."color-name-1.1.4" @@ -77450,7 +78783,7 @@ in sources."qs-6.7.0" sources."range-parser-1.2.1" sources."raw-body-2.4.0" - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."require-directory-2.1.1" sources."require-main-filename-2.0.0" sources."requires-port-1.0.0" @@ -77652,7 +78985,7 @@ in sources."abab-1.0.4" sources."acorn-2.7.0" sources."acorn-globals-1.0.9" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-regex-2.1.1" sources."ansi-styles-3.2.1" sources."asn1-0.2.4" @@ -78039,14 +79372,14 @@ in sources."@types/glob-7.1.3" sources."@types/minimatch-3.0.3" sources."@types/minimist-1.2.0" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."@types/normalize-package-data-2.4.0" sources."@zkochan/cmd-shim-3.1.0" sources."JSONStream-1.3.5" sources."abbrev-1.1.1" sources."agent-base-4.3.0" sources."agentkeepalive-3.5.2" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-escapes-3.2.0" sources."ansi-regex-2.1.1" sources."ansi-styles-3.2.1" @@ -78842,12 +80175,12 @@ in sources."tr46-1.0.1" sources."trim-newlines-3.0.0" sources."trim-off-newlines-1.0.1" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."type-fest-0.3.1" sources."typedarray-0.0.6" - sources."uglify-js-3.11.1" + sources."uglify-js-3.11.3" sources."uid-number-0.0.6" sources."umask-1.1.0" sources."union-value-1.0.1" @@ -78945,7 +80278,7 @@ in sources."prr-1.0.1" sources."semver-5.7.1" sources."source-map-0.6.1" - sources."tslib-1.14.0" + sources."tslib-1.14.1" ]; buildInputs = globalBuildInputs; meta = { @@ -79149,7 +80482,7 @@ in sources."mixin-deep-1.3.2" sources."morgan-1.10.0" sources."ms-2.0.0" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."nanomatch-1.2.13" sources."negotiator-0.6.2" sources."normalize-path-3.0.0" @@ -79323,7 +80656,7 @@ in dependencies = [ sources."accepts-1.3.7" sources."after-0.8.2" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."anymatch-1.3.2" sources."argparse-1.0.10" sources."arr-diff-2.0.0" @@ -79556,7 +80889,7 @@ in ]; }) sources."ms-2.0.0" - sources."nan-2.14.1" + sources."nan-2.14.2" (sources."nanomatch-1.2.13" // { dependencies = [ sources."arr-diff-4.0.0" @@ -79832,56 +81165,57 @@ in src = ../interpreters/clojurescript/lumo; dependencies = [ sources."@babel/code-frame-7.10.4" - sources."@babel/compat-data-7.11.0" - sources."@babel/core-7.11.6" - sources."@babel/generator-7.11.6" + sources."@babel/compat-data-7.12.1" + sources."@babel/core-7.12.3" + sources."@babel/generator-7.12.1" sources."@babel/helper-annotate-as-pure-7.10.4" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.10.4" - sources."@babel/helper-compilation-targets-7.10.4" - sources."@babel/helper-create-class-features-plugin-7.10.5" - sources."@babel/helper-create-regexp-features-plugin-7.10.4" + sources."@babel/helper-compilation-targets-7.12.1" + sources."@babel/helper-create-class-features-plugin-7.12.1" + sources."@babel/helper-create-regexp-features-plugin-7.12.1" sources."@babel/helper-define-map-7.10.5" - sources."@babel/helper-explode-assignable-expression-7.11.4" + sources."@babel/helper-explode-assignable-expression-7.12.1" sources."@babel/helper-function-name-7.10.4" sources."@babel/helper-get-function-arity-7.10.4" sources."@babel/helper-hoist-variables-7.10.4" - sources."@babel/helper-member-expression-to-functions-7.11.0" - sources."@babel/helper-module-imports-7.10.4" - sources."@babel/helper-module-transforms-7.11.0" + sources."@babel/helper-member-expression-to-functions-7.12.1" + sources."@babel/helper-module-imports-7.12.1" + sources."@babel/helper-module-transforms-7.12.1" sources."@babel/helper-optimise-call-expression-7.10.4" sources."@babel/helper-plugin-utils-7.10.4" sources."@babel/helper-regex-7.10.5" - sources."@babel/helper-remap-async-to-generator-7.11.4" - sources."@babel/helper-replace-supers-7.10.4" - sources."@babel/helper-simple-access-7.10.4" - sources."@babel/helper-skip-transparent-expression-wrappers-7.11.0" + sources."@babel/helper-remap-async-to-generator-7.12.1" + sources."@babel/helper-replace-supers-7.12.1" + sources."@babel/helper-simple-access-7.12.1" + sources."@babel/helper-skip-transparent-expression-wrappers-7.12.1" sources."@babel/helper-split-export-declaration-7.11.0" sources."@babel/helper-validator-identifier-7.10.4" - sources."@babel/helper-wrap-function-7.10.4" - sources."@babel/helpers-7.10.4" + sources."@babel/helper-validator-option-7.12.1" + sources."@babel/helper-wrap-function-7.12.3" + sources."@babel/helpers-7.12.1" (sources."@babel/highlight-7.10.4" // { dependencies = [ sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.11.5" + sources."@babel/parser-7.12.3" sources."@babel/plugin-external-helpers-7.8.3" - sources."@babel/plugin-proposal-async-generator-functions-7.10.5" - sources."@babel/plugin-proposal-class-properties-7.10.4" - sources."@babel/plugin-proposal-dynamic-import-7.10.4" - sources."@babel/plugin-proposal-export-namespace-from-7.10.4" - sources."@babel/plugin-proposal-json-strings-7.10.4" - sources."@babel/plugin-proposal-logical-assignment-operators-7.11.0" - sources."@babel/plugin-proposal-nullish-coalescing-operator-7.10.4" - sources."@babel/plugin-proposal-numeric-separator-7.10.4" - sources."@babel/plugin-proposal-object-rest-spread-7.11.0" - sources."@babel/plugin-proposal-optional-catch-binding-7.10.4" - sources."@babel/plugin-proposal-optional-chaining-7.11.0" - sources."@babel/plugin-proposal-private-methods-7.10.4" - sources."@babel/plugin-proposal-unicode-property-regex-7.10.4" + sources."@babel/plugin-proposal-async-generator-functions-7.12.1" + sources."@babel/plugin-proposal-class-properties-7.12.1" + sources."@babel/plugin-proposal-dynamic-import-7.12.1" + sources."@babel/plugin-proposal-export-namespace-from-7.12.1" + sources."@babel/plugin-proposal-json-strings-7.12.1" + sources."@babel/plugin-proposal-logical-assignment-operators-7.12.1" + sources."@babel/plugin-proposal-nullish-coalescing-operator-7.12.1" + sources."@babel/plugin-proposal-numeric-separator-7.12.1" + sources."@babel/plugin-proposal-object-rest-spread-7.12.1" + sources."@babel/plugin-proposal-optional-catch-binding-7.12.1" + sources."@babel/plugin-proposal-optional-chaining-7.12.1" + sources."@babel/plugin-proposal-private-methods-7.12.1" + sources."@babel/plugin-proposal-unicode-property-regex-7.12.1" sources."@babel/plugin-syntax-async-generators-7.8.4" sources."@babel/plugin-syntax-bigint-7.8.3" - sources."@babel/plugin-syntax-class-properties-7.10.4" + sources."@babel/plugin-syntax-class-properties-7.12.1" sources."@babel/plugin-syntax-dynamic-import-7.8.3" sources."@babel/plugin-syntax-export-namespace-from-7.8.3" sources."@babel/plugin-syntax-import-meta-7.10.4" @@ -79892,47 +81226,47 @@ in sources."@babel/plugin-syntax-object-rest-spread-7.8.3" sources."@babel/plugin-syntax-optional-catch-binding-7.8.3" sources."@babel/plugin-syntax-optional-chaining-7.8.3" - sources."@babel/plugin-syntax-top-level-await-7.10.4" - sources."@babel/plugin-transform-arrow-functions-7.10.4" - sources."@babel/plugin-transform-async-to-generator-7.10.4" - sources."@babel/plugin-transform-block-scoped-functions-7.10.4" - sources."@babel/plugin-transform-block-scoping-7.11.1" - sources."@babel/plugin-transform-classes-7.10.4" - sources."@babel/plugin-transform-computed-properties-7.10.4" - sources."@babel/plugin-transform-destructuring-7.10.4" - sources."@babel/plugin-transform-dotall-regex-7.10.4" - sources."@babel/plugin-transform-duplicate-keys-7.10.4" - sources."@babel/plugin-transform-exponentiation-operator-7.10.4" - sources."@babel/plugin-transform-for-of-7.10.4" - sources."@babel/plugin-transform-function-name-7.10.4" - sources."@babel/plugin-transform-literals-7.10.4" - sources."@babel/plugin-transform-member-expression-literals-7.10.4" - sources."@babel/plugin-transform-modules-amd-7.10.5" - sources."@babel/plugin-transform-modules-commonjs-7.10.4" - sources."@babel/plugin-transform-modules-systemjs-7.10.5" - sources."@babel/plugin-transform-modules-umd-7.10.4" - sources."@babel/plugin-transform-named-capturing-groups-regex-7.10.4" - sources."@babel/plugin-transform-new-target-7.10.4" - sources."@babel/plugin-transform-object-super-7.10.4" - sources."@babel/plugin-transform-parameters-7.10.5" - sources."@babel/plugin-transform-property-literals-7.10.4" - sources."@babel/plugin-transform-regenerator-7.10.4" - sources."@babel/plugin-transform-reserved-words-7.10.4" - sources."@babel/plugin-transform-runtime-7.11.5" - sources."@babel/plugin-transform-shorthand-properties-7.10.4" - sources."@babel/plugin-transform-spread-7.11.0" - sources."@babel/plugin-transform-sticky-regex-7.10.4" - sources."@babel/plugin-transform-template-literals-7.10.5" - sources."@babel/plugin-transform-typeof-symbol-7.10.4" - sources."@babel/plugin-transform-unicode-escapes-7.10.4" - sources."@babel/plugin-transform-unicode-regex-7.10.4" - sources."@babel/preset-env-7.11.5" + sources."@babel/plugin-syntax-top-level-await-7.12.1" + sources."@babel/plugin-transform-arrow-functions-7.12.1" + sources."@babel/plugin-transform-async-to-generator-7.12.1" + sources."@babel/plugin-transform-block-scoped-functions-7.12.1" + sources."@babel/plugin-transform-block-scoping-7.12.1" + sources."@babel/plugin-transform-classes-7.12.1" + sources."@babel/plugin-transform-computed-properties-7.12.1" + sources."@babel/plugin-transform-destructuring-7.12.1" + sources."@babel/plugin-transform-dotall-regex-7.12.1" + sources."@babel/plugin-transform-duplicate-keys-7.12.1" + sources."@babel/plugin-transform-exponentiation-operator-7.12.1" + sources."@babel/plugin-transform-for-of-7.12.1" + sources."@babel/plugin-transform-function-name-7.12.1" + sources."@babel/plugin-transform-literals-7.12.1" + sources."@babel/plugin-transform-member-expression-literals-7.12.1" + sources."@babel/plugin-transform-modules-amd-7.12.1" + sources."@babel/plugin-transform-modules-commonjs-7.12.1" + sources."@babel/plugin-transform-modules-systemjs-7.12.1" + sources."@babel/plugin-transform-modules-umd-7.12.1" + sources."@babel/plugin-transform-named-capturing-groups-regex-7.12.1" + sources."@babel/plugin-transform-new-target-7.12.1" + sources."@babel/plugin-transform-object-super-7.12.1" + sources."@babel/plugin-transform-parameters-7.12.1" + sources."@babel/plugin-transform-property-literals-7.12.1" + sources."@babel/plugin-transform-regenerator-7.12.1" + sources."@babel/plugin-transform-reserved-words-7.12.1" + sources."@babel/plugin-transform-runtime-7.12.1" + sources."@babel/plugin-transform-shorthand-properties-7.12.1" + sources."@babel/plugin-transform-spread-7.12.1" + sources."@babel/plugin-transform-sticky-regex-7.12.1" + sources."@babel/plugin-transform-template-literals-7.12.1" + sources."@babel/plugin-transform-typeof-symbol-7.12.1" + sources."@babel/plugin-transform-unicode-escapes-7.12.1" + sources."@babel/plugin-transform-unicode-regex-7.12.1" + sources."@babel/preset-env-7.12.1" sources."@babel/preset-modules-0.1.4" sources."@babel/preset-stage-2-7.8.3" - sources."@babel/runtime-7.11.2" + sources."@babel/runtime-7.12.1" sources."@babel/template-7.10.4" - sources."@babel/traverse-7.11.5" - sources."@babel/types-7.11.5" + sources."@babel/traverse-7.12.1" + sources."@babel/types-7.12.1" sources."@cnakazawa/watch-1.0.4" sources."@comandeer/babel-plugin-banner-5.0.0" sources."@istanbuljs/load-nyc-config-1.1.0" @@ -79953,10 +81287,10 @@ in sources."@types/istanbul-lib-report-3.0.0" sources."@types/istanbul-reports-1.1.2" sources."@types/json-schema-7.0.6" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."@types/normalize-package-data-2.4.0" sources."@types/resolve-0.0.8" - sources."@types/yargs-15.0.7" + sources."@types/yargs-15.0.9" sources."@types/yargs-parser-15.0.0" sources."@webassemblyjs/ast-1.9.0" sources."@webassemblyjs/floating-point-hex-parser-1.9.0" @@ -79983,7 +81317,7 @@ in sources."acorn-7.4.1" sources."acorn-node-1.8.2" sources."acorn-walk-7.2.0" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ajv-errors-1.0.1" sources."ajv-keywords-3.5.2" sources."amdefine-1.0.1" @@ -80130,7 +81464,7 @@ in sources."cache-base-1.0.1" sources."cached-path-relative-1.0.2" sources."camelcase-5.3.1" - sources."caniuse-lite-1.0.30001144" + sources."caniuse-lite-1.0.30001148" sources."capture-exit-2.0.0" sources."caseless-0.12.0" (sources."chalk-3.0.0" // { @@ -80142,7 +81476,7 @@ in sources."supports-color-7.2.0" ]; }) - (sources."chokidar-3.4.2" // { + (sources."chokidar-3.4.3" // { dependencies = [ sources."braces-3.0.2" sources."fill-range-7.0.1" @@ -80252,7 +81586,7 @@ in sources."duplexer2-0.1.4" sources."duplexify-3.7.1" sources."ecc-jsbn-0.1.2" - sources."electron-to-chromium-1.3.578" + sources."electron-to-chromium-1.3.582" (sources."elliptic-6.5.3" // { dependencies = [ sources."bn.js-4.11.9" @@ -80270,7 +81604,7 @@ in sources."error-ex-1.3.2" sources."es-abstract-1.18.0-next.1" sources."es-to-primitive-1.2.1" - sources."escalade-3.1.0" + sources."escalade-3.1.1" sources."escape-string-regexp-1.0.5" sources."eslint-scope-4.0.3" sources."eslint-visitor-keys-1.3.0" @@ -80417,9 +81751,8 @@ in sources."inherits-2.0.4" sources."ini-1.3.5" sources."inline-source-map-0.6.2" - sources."insert-module-globals-7.2.0" + sources."insert-module-globals-7.2.1" sources."interpret-1.4.0" - sources."invariant-2.2.4" sources."is-accessor-descriptor-1.0.0" sources."is-arrayish-0.2.1" sources."is-binary-path-2.1.0" @@ -80487,8 +81820,6 @@ in sources."jszip-2.6.1" sources."kind-of-6.0.3" sources."labeled-stream-splicer-2.0.2" - sources."leven-3.1.0" - sources."levenary-1.1.1" sources."lines-and-columns-1.1.6" sources."loader-runner-2.4.0" (sources."loader-utils-1.4.0" // { @@ -80499,7 +81830,6 @@ in sources."locate-path-5.0.0" sources."lodash-4.17.20" sources."lodash.memoize-3.0.4" - sources."loose-envify-1.4.0" sources."lru-cache-5.1.1" sources."magic-string-0.25.7" (sources."make-dir-3.1.0" // { @@ -80547,7 +81877,7 @@ in ]; }) sources."ms-2.1.2" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."nanomatch-1.2.13" sources."ncp-2.0.0" sources."neo-async-2.6.2" @@ -80567,7 +81897,7 @@ in ]; }) sources."node-modules-regexp-1.0.0" - sources."node-releases-1.1.61" + sources."node-releases-1.1.63" sources."normalize-package-data-2.5.0" sources."normalize-path-3.0.0" sources."npm-run-path-2.0.2" @@ -80661,7 +81991,7 @@ in sources."string_decoder-1.1.1" ]; }) - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."realpath-native-2.0.0" sources."regenerate-1.4.1" sources."regenerate-unicode-properties-8.2.0" @@ -80865,7 +82195,7 @@ in sources."to-regex-3.0.2" sources."to-regex-range-2.1.1" sources."tough-cookie-2.5.0" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tty-browserify-0.0.1" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" @@ -81032,7 +82362,7 @@ in sha512 = "Q9LTCwBjWcQR9dd6LNMXg9GFewkRiVEaU/+Y2ZcCbOb0lVqIfeJworWYGakG7bFj8HJQILBTRnAnEK9DDKfdPA=="; }; dependencies = [ - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-styles-4.3.0" sources."asn1-0.2.4" sources."assert-plus-1.0.0" @@ -81242,7 +82572,7 @@ in sources."har-schema-2.0.0" (sources."har-validator-5.1.5" // { dependencies = [ - sources."ajv-6.12.5" + sources."ajv-6.12.6" ]; }) sources."has-ansi-2.0.0" @@ -81456,13 +82786,13 @@ in "@mermaid-js/mermaid-cli" = nodeEnv.buildNodePackage { name = "_at_mermaid-js_slash_mermaid-cli"; packageName = "@mermaid-js/mermaid-cli"; - version = "8.8.1"; + version = "8.8.2-beta.8"; src = fetchurl { - url = "https://registry.npmjs.org/@mermaid-js/mermaid-cli/-/mermaid-cli-8.8.1.tgz"; - sha512 = "cESM33+QjLuHUcMk9B2qpsplx4h+97adwI/P0/2SvFwFlhVsFfi82a53vV1638hIBLac+RxGG2aT+Fq8YYHHRQ=="; + url = "https://registry.npmjs.org/@mermaid-js/mermaid-cli/-/mermaid-cli-8.8.2-beta.8.tgz"; + sha512 = "X9I7gwvqKVdqVvqi9AVfUWXnHQQYjssWJ2asKfhBDAkQn0vPagKkx6EjzKcRgyIroWGXN6ZpwkQ/gMvTPFlx7g=="; }; dependencies = [ - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."@types/yauzl-2.9.1" sources."agent-base-5.1.1" sources."ansi-styles-4.3.0" @@ -81545,22 +82875,22 @@ in sources."@fluentui/date-time-utilities-7.9.0" sources."@fluentui/dom-utilities-1.1.1" sources."@fluentui/keyboard-key-0.2.12" - sources."@fluentui/react-7.145.0" - sources."@fluentui/react-focus-7.16.10" + sources."@fluentui/react-7.147.1" + sources."@fluentui/react-focus-7.16.13" sources."@fluentui/react-window-provider-0.3.3" - sources."@fluentui/theme-1.3.0" - sources."@microsoft/load-themed-styles-1.10.108" + sources."@fluentui/theme-1.5.1" + sources."@microsoft/load-themed-styles-1.10.114" sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" - sources."@uifabric/foundation-7.9.10" - sources."@uifabric/icons-7.5.9" + sources."@uifabric/foundation-7.9.14" + sources."@uifabric/icons-7.5.12" sources."@uifabric/merge-styles-7.19.1" sources."@uifabric/react-hooks-7.13.6" sources."@uifabric/set-version-7.0.23" - sources."@uifabric/styling-7.16.10" + sources."@uifabric/styling-7.16.13" sources."@uifabric/utilities-7.32.4" sources."accepts-1.3.7" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-escapes-1.4.0" sources."ansi-regex-2.1.1" sources."ansi-styles-2.2.1" @@ -81684,7 +83014,7 @@ in sources."node-fetch-1.6.3" sources."normalize-url-4.5.0" sources."object-assign-4.1.1" - sources."office-ui-fabric-react-7.145.0" + sources."office-ui-fabric-react-7.147.1" sources."on-finished-2.3.0" sources."on-headers-1.0.2" sources."once-1.4.0" @@ -81735,8 +83065,8 @@ in sources."range-parser-1.2.1" sources."raw-body-2.4.0" sources."rc-1.2.8" - sources."react-16.13.1" - sources."react-dom-16.13.1" + sources."react-16.14.0" + sources."react-dom-16.14.0" sources."react-is-16.13.1" sources."readable-stream-3.6.0" sources."regenerator-runtime-0.10.5" @@ -81783,14 +83113,14 @@ in sources."strip-json-comments-2.0.1" sources."supports-color-2.0.0" sources."swagger-schema-official-2.0.0-bab6bed" - sources."swagger-ui-dist-3.35.0" + sources."swagger-ui-dist-3.35.2" sources."tail-2.0.4" sources."through-2.3.8" sources."tmp-0.0.33" sources."to-readable-stream-1.0.0" sources."toidentifier-1.0.0" sources."ts-log-2.2.3" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."type-is-1.6.18" sources."unpipe-1.0.0" sources."uri-js-4.4.0" @@ -81814,18 +83144,18 @@ in mocha = nodeEnv.buildNodePackage { name = "mocha"; packageName = "mocha"; - version = "8.1.3"; + version = "8.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/mocha/-/mocha-8.1.3.tgz"; - sha512 = "ZbaYib4hT4PpF4bdSO2DohooKXIn4lDeiYqB+vTmCdr6l2woW0b6H3pf5x4sM5nwQMru9RvjjHYWVGltR50ZBw=="; + url = "https://registry.npmjs.org/mocha/-/mocha-8.2.0.tgz"; + sha512 = "lEWEMq2LMfNJMKeuEwb5UELi+OgFDollXaytR5ggQcHpzG3NP/R7rvixAvF+9/lLsTWhWG+4yD2M70GsM06nxw=="; }; dependencies = [ + sources."@ungap/promise-all-settled-1.1.2" sources."ansi-colors-4.1.1" sources."ansi-regex-3.0.0" sources."ansi-styles-4.3.0" sources."anymatch-3.1.1" sources."argparse-1.0.10" - sources."array.prototype.map-1.0.2" sources."balanced-match-1.0.0" sources."binary-extensions-2.1.0" sources."brace-expansion-1.1.11" @@ -81833,7 +83163,7 @@ in sources."browser-stdout-1.3.1" sources."camelcase-5.3.1" sources."chalk-4.1.0" - sources."chokidar-3.4.2" + sources."chokidar-3.4.3" (sources."cliui-5.0.0" // { dependencies = [ sources."ansi-regex-4.1.0" @@ -81844,67 +83174,39 @@ in sources."color-convert-2.0.1" sources."color-name-1.1.4" sources."concat-map-0.0.1" - sources."debug-4.1.1" + sources."debug-4.2.0" sources."decamelize-1.2.0" - sources."define-properties-1.1.3" sources."diff-4.0.2" sources."emoji-regex-7.0.3" - (sources."es-abstract-1.17.7" // { - dependencies = [ - sources."es-abstract-1.18.0-next.1" - sources."object.assign-4.1.1" - ]; - }) - sources."es-array-method-boxes-properly-1.0.0" - sources."es-get-iterator-1.1.0" - sources."es-to-primitive-1.2.1" sources."escape-string-regexp-4.0.0" sources."esprima-4.0.1" sources."fill-range-7.0.1" sources."find-up-5.0.0" - sources."flat-4.1.0" + sources."flat-5.0.2" sources."fs.realpath-1.0.0" sources."fsevents-2.1.3" - sources."function-bind-1.1.1" sources."get-caller-file-2.0.5" sources."glob-7.1.6" sources."glob-parent-5.1.1" sources."growl-1.10.5" - sources."has-1.0.3" sources."has-flag-4.0.0" - sources."has-symbols-1.0.1" sources."he-1.2.0" sources."inflight-1.0.6" sources."inherits-2.0.4" - sources."is-arguments-1.0.4" sources."is-binary-path-2.1.0" - sources."is-buffer-2.0.4" - sources."is-callable-1.2.2" - sources."is-date-object-1.0.2" sources."is-extglob-2.1.1" sources."is-fullwidth-code-point-2.0.0" sources."is-glob-4.0.1" - sources."is-map-2.0.1" - sources."is-negative-zero-2.0.0" sources."is-number-7.0.0" - sources."is-plain-obj-1.1.0" - sources."is-regex-1.1.1" - sources."is-set-2.0.1" - sources."is-string-1.0.5" - sources."is-symbol-1.0.3" - sources."isarray-2.0.5" + sources."is-plain-obj-2.1.0" sources."isexe-2.0.0" - sources."iterate-iterator-1.0.1" - sources."iterate-value-1.0.2" sources."js-yaml-3.14.0" sources."locate-path-6.0.0" sources."log-symbols-4.0.0" sources."minimatch-3.0.4" sources."ms-2.1.2" + sources."nanoid-3.1.12" sources."normalize-path-3.0.0" - sources."object-inspect-1.8.0" - sources."object-keys-1.1.1" - sources."object.assign-4.1.0" sources."once-1.4.0" sources."p-limit-3.0.2" sources."p-locate-5.0.0" @@ -81912,26 +83214,23 @@ in sources."path-exists-4.0.0" sources."path-is-absolute-1.0.1" sources."picomatch-2.2.2" - sources."promise.allsettled-1.0.2" sources."randombytes-2.1.0" - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."require-directory-2.1.1" sources."require-main-filename-2.0.0" sources."safe-buffer-5.2.1" - sources."serialize-javascript-4.0.0" + sources."serialize-javascript-5.0.1" sources."set-blocking-2.0.0" sources."sprintf-js-1.0.3" sources."string-width-2.1.1" - sources."string.prototype.trimend-1.0.1" - sources."string.prototype.trimstart-1.0.1" sources."strip-ansi-4.0.0" - sources."strip-json-comments-3.0.1" - sources."supports-color-7.1.0" + sources."strip-json-comments-3.1.1" + sources."supports-color-7.2.0" sources."to-regex-range-5.0.1" sources."which-2.0.2" sources."which-module-2.0.0" sources."wide-align-1.1.3" - sources."workerpool-6.0.0" + sources."workerpool-6.0.2" (sources."wrap-ansi-5.1.0" // { dependencies = [ sources."ansi-regex-4.1.0" @@ -81957,18 +83256,10 @@ in ]; }) sources."yargs-parser-13.1.2" - (sources."yargs-unparser-1.6.1" // { + (sources."yargs-unparser-2.0.0" // { dependencies = [ - sources."ansi-regex-4.1.0" - sources."find-up-3.0.0" - sources."locate-path-3.0.0" - sources."p-limit-2.3.0" - sources."p-locate-3.0.0" - sources."path-exists-3.0.0" - sources."string-width-3.1.0" - sources."strip-ansi-5.2.0" - sources."yargs-14.2.3" - sources."yargs-parser-15.0.1" + sources."camelcase-6.1.0" + sources."decamelize-4.0.0" ]; }) ]; @@ -82056,7 +83347,7 @@ in sources."color-3.0.0" sources."color-convert-1.9.3" sources."color-name-1.1.3" - sources."color-string-1.5.3" + sources."color-string-1.5.4" sources."colornames-1.1.1" sources."colors-1.4.0" sources."colorspace-1.1.2" @@ -82109,69 +83400,66 @@ in netlify-cli = nodeEnv.buildNodePackage { name = "netlify-cli"; packageName = "netlify-cli"; - version = "2.65.1"; + version = "2.65.6"; src = fetchurl { - url = "https://registry.npmjs.org/netlify-cli/-/netlify-cli-2.65.1.tgz"; - sha512 = "JdcOuoz6LCNmw9BgDqFgOsQrKP1F4TeUNgX3h81DxKr7apJeXJxZwXJfR8l+5BM9zn3l907DYO2zQ46hh8WQlg=="; + url = "https://registry.npmjs.org/netlify-cli/-/netlify-cli-2.65.6.tgz"; + sha512 = "0e3B0qQV2JRQ7fzkyaQ8XiszK0r6DyWTuZ+7r2OdUo0pPfQ/qZowfSjt/8WcKUZjX97ITPCxtKYTBVb7GJvgZA=="; }; dependencies = [ sources."@babel/code-frame-7.10.4" - (sources."@babel/compat-data-7.11.0" // { + sources."@babel/compat-data-7.12.1" + (sources."@babel/core-7.12.3" // { dependencies = [ sources."semver-5.7.1" ]; }) - (sources."@babel/core-7.11.6" // { - dependencies = [ - sources."semver-5.7.1" - ]; - }) - sources."@babel/generator-7.11.6" + sources."@babel/generator-7.12.1" sources."@babel/helper-annotate-as-pure-7.10.4" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.10.4" - (sources."@babel/helper-compilation-targets-7.10.4" // { + (sources."@babel/helper-compilation-targets-7.12.1" // { dependencies = [ sources."semver-5.7.1" ]; }) - sources."@babel/helper-create-class-features-plugin-7.10.5" - sources."@babel/helper-create-regexp-features-plugin-7.10.4" + sources."@babel/helper-create-class-features-plugin-7.12.1" + sources."@babel/helper-create-regexp-features-plugin-7.12.1" sources."@babel/helper-define-map-7.10.5" - sources."@babel/helper-explode-assignable-expression-7.11.4" + sources."@babel/helper-explode-assignable-expression-7.12.1" sources."@babel/helper-function-name-7.10.4" sources."@babel/helper-get-function-arity-7.10.4" sources."@babel/helper-hoist-variables-7.10.4" - sources."@babel/helper-member-expression-to-functions-7.11.0" - sources."@babel/helper-module-imports-7.10.4" - sources."@babel/helper-module-transforms-7.11.0" + sources."@babel/helper-member-expression-to-functions-7.12.1" + sources."@babel/helper-module-imports-7.12.1" + sources."@babel/helper-module-transforms-7.12.1" sources."@babel/helper-optimise-call-expression-7.10.4" sources."@babel/helper-plugin-utils-7.10.4" sources."@babel/helper-regex-7.10.5" - sources."@babel/helper-remap-async-to-generator-7.11.4" - sources."@babel/helper-replace-supers-7.10.4" - sources."@babel/helper-simple-access-7.10.4" - sources."@babel/helper-skip-transparent-expression-wrappers-7.11.0" + sources."@babel/helper-remap-async-to-generator-7.12.1" + sources."@babel/helper-replace-supers-7.12.1" + sources."@babel/helper-simple-access-7.12.1" + sources."@babel/helper-skip-transparent-expression-wrappers-7.12.1" sources."@babel/helper-split-export-declaration-7.11.0" sources."@babel/helper-validator-identifier-7.10.4" - sources."@babel/helper-wrap-function-7.10.4" - sources."@babel/helpers-7.10.4" + sources."@babel/helper-validator-option-7.12.1" + sources."@babel/helper-wrap-function-7.12.3" + sources."@babel/helpers-7.12.1" sources."@babel/highlight-7.10.4" - sources."@babel/parser-7.11.5" - sources."@babel/plugin-proposal-async-generator-functions-7.10.5" - sources."@babel/plugin-proposal-class-properties-7.10.4" - sources."@babel/plugin-proposal-dynamic-import-7.10.4" - sources."@babel/plugin-proposal-export-namespace-from-7.10.4" - sources."@babel/plugin-proposal-json-strings-7.10.4" - sources."@babel/plugin-proposal-logical-assignment-operators-7.11.0" - sources."@babel/plugin-proposal-nullish-coalescing-operator-7.10.4" - sources."@babel/plugin-proposal-numeric-separator-7.10.4" - sources."@babel/plugin-proposal-object-rest-spread-7.11.0" - sources."@babel/plugin-proposal-optional-catch-binding-7.10.4" - sources."@babel/plugin-proposal-optional-chaining-7.11.0" - sources."@babel/plugin-proposal-private-methods-7.10.4" - sources."@babel/plugin-proposal-unicode-property-regex-7.10.4" + sources."@babel/parser-7.12.3" + sources."@babel/plugin-proposal-async-generator-functions-7.12.1" + sources."@babel/plugin-proposal-class-properties-7.12.1" + sources."@babel/plugin-proposal-dynamic-import-7.12.1" + sources."@babel/plugin-proposal-export-namespace-from-7.12.1" + sources."@babel/plugin-proposal-json-strings-7.12.1" + sources."@babel/plugin-proposal-logical-assignment-operators-7.12.1" + sources."@babel/plugin-proposal-nullish-coalescing-operator-7.12.1" + sources."@babel/plugin-proposal-numeric-separator-7.12.1" + sources."@babel/plugin-proposal-object-rest-spread-7.12.1" + sources."@babel/plugin-proposal-optional-catch-binding-7.12.1" + sources."@babel/plugin-proposal-optional-chaining-7.12.1" + sources."@babel/plugin-proposal-private-methods-7.12.1" + sources."@babel/plugin-proposal-unicode-property-regex-7.12.1" sources."@babel/plugin-syntax-async-generators-7.8.4" - sources."@babel/plugin-syntax-class-properties-7.10.4" + sources."@babel/plugin-syntax-class-properties-7.12.1" sources."@babel/plugin-syntax-dynamic-import-7.8.3" sources."@babel/plugin-syntax-export-namespace-from-7.8.3" sources."@babel/plugin-syntax-json-strings-7.8.3" @@ -82181,49 +83469,49 @@ in sources."@babel/plugin-syntax-object-rest-spread-7.8.3" sources."@babel/plugin-syntax-optional-catch-binding-7.8.3" sources."@babel/plugin-syntax-optional-chaining-7.8.3" - sources."@babel/plugin-syntax-top-level-await-7.10.4" - sources."@babel/plugin-transform-arrow-functions-7.10.4" - sources."@babel/plugin-transform-async-to-generator-7.10.4" - sources."@babel/plugin-transform-block-scoped-functions-7.10.4" - sources."@babel/plugin-transform-block-scoping-7.11.1" - sources."@babel/plugin-transform-classes-7.10.4" - sources."@babel/plugin-transform-computed-properties-7.10.4" - sources."@babel/plugin-transform-destructuring-7.10.4" - sources."@babel/plugin-transform-dotall-regex-7.10.4" - sources."@babel/plugin-transform-duplicate-keys-7.10.4" - sources."@babel/plugin-transform-exponentiation-operator-7.10.4" - sources."@babel/plugin-transform-for-of-7.10.4" - sources."@babel/plugin-transform-function-name-7.10.4" - sources."@babel/plugin-transform-literals-7.10.4" - sources."@babel/plugin-transform-member-expression-literals-7.10.4" - sources."@babel/plugin-transform-modules-amd-7.10.5" - sources."@babel/plugin-transform-modules-commonjs-7.10.4" - sources."@babel/plugin-transform-modules-systemjs-7.10.5" - sources."@babel/plugin-transform-modules-umd-7.10.4" - sources."@babel/plugin-transform-named-capturing-groups-regex-7.10.4" - sources."@babel/plugin-transform-new-target-7.10.4" - sources."@babel/plugin-transform-object-super-7.10.4" - sources."@babel/plugin-transform-parameters-7.10.5" - sources."@babel/plugin-transform-property-literals-7.10.4" - sources."@babel/plugin-transform-regenerator-7.10.4" - sources."@babel/plugin-transform-reserved-words-7.10.4" - sources."@babel/plugin-transform-shorthand-properties-7.10.4" - sources."@babel/plugin-transform-spread-7.11.0" - sources."@babel/plugin-transform-sticky-regex-7.10.4" - sources."@babel/plugin-transform-template-literals-7.10.5" - sources."@babel/plugin-transform-typeof-symbol-7.10.4" - sources."@babel/plugin-transform-unicode-escapes-7.10.4" - sources."@babel/plugin-transform-unicode-regex-7.10.4" - (sources."@babel/preset-env-7.11.5" // { + sources."@babel/plugin-syntax-top-level-await-7.12.1" + sources."@babel/plugin-transform-arrow-functions-7.12.1" + sources."@babel/plugin-transform-async-to-generator-7.12.1" + sources."@babel/plugin-transform-block-scoped-functions-7.12.1" + sources."@babel/plugin-transform-block-scoping-7.12.1" + sources."@babel/plugin-transform-classes-7.12.1" + sources."@babel/plugin-transform-computed-properties-7.12.1" + sources."@babel/plugin-transform-destructuring-7.12.1" + sources."@babel/plugin-transform-dotall-regex-7.12.1" + sources."@babel/plugin-transform-duplicate-keys-7.12.1" + sources."@babel/plugin-transform-exponentiation-operator-7.12.1" + sources."@babel/plugin-transform-for-of-7.12.1" + sources."@babel/plugin-transform-function-name-7.12.1" + sources."@babel/plugin-transform-literals-7.12.1" + sources."@babel/plugin-transform-member-expression-literals-7.12.1" + sources."@babel/plugin-transform-modules-amd-7.12.1" + sources."@babel/plugin-transform-modules-commonjs-7.12.1" + sources."@babel/plugin-transform-modules-systemjs-7.12.1" + sources."@babel/plugin-transform-modules-umd-7.12.1" + sources."@babel/plugin-transform-named-capturing-groups-regex-7.12.1" + sources."@babel/plugin-transform-new-target-7.12.1" + sources."@babel/plugin-transform-object-super-7.12.1" + sources."@babel/plugin-transform-parameters-7.12.1" + sources."@babel/plugin-transform-property-literals-7.12.1" + sources."@babel/plugin-transform-regenerator-7.12.1" + sources."@babel/plugin-transform-reserved-words-7.12.1" + sources."@babel/plugin-transform-shorthand-properties-7.12.1" + sources."@babel/plugin-transform-spread-7.12.1" + sources."@babel/plugin-transform-sticky-regex-7.12.1" + sources."@babel/plugin-transform-template-literals-7.12.1" + sources."@babel/plugin-transform-typeof-symbol-7.12.1" + sources."@babel/plugin-transform-unicode-escapes-7.12.1" + sources."@babel/plugin-transform-unicode-regex-7.12.1" + (sources."@babel/preset-env-7.12.1" // { dependencies = [ sources."semver-5.7.1" ]; }) sources."@babel/preset-modules-0.1.4" - sources."@babel/runtime-7.11.2" + sources."@babel/runtime-7.12.1" sources."@babel/template-7.10.4" - sources."@babel/traverse-7.11.5" - sources."@babel/types-7.11.5" + sources."@babel/traverse-7.12.1" + sources."@babel/types-7.12.1" sources."@bugsnag/browser-7.4.0" sources."@bugsnag/core-7.3.5" sources."@bugsnag/cuid-3.0.0" @@ -82233,20 +83521,20 @@ in sources."@dabh/diagnostics-2.0.2" sources."@jest/types-24.9.0" sources."@mrmlnc/readdir-enhanced-2.2.1" - (sources."@netlify/build-4.8.3" // { + (sources."@netlify/build-5.0.2" // { dependencies = [ sources."chalk-3.0.0" sources."resolve-2.0.0-next.1" ]; }) - sources."@netlify/cache-utils-1.0.3" - (sources."@netlify/config-2.3.2" // { + sources."@netlify/cache-utils-1.0.4" + (sources."@netlify/config-2.3.4" // { dependencies = [ sources."chalk-3.0.0" ]; }) - sources."@netlify/functions-utils-1.2.9" - (sources."@netlify/git-utils-1.0.2" // { + sources."@netlify/functions-utils-1.2.10" + (sources."@netlify/git-utils-1.0.4" // { dependencies = [ sources."braces-3.0.2" sources."fill-range-7.0.1" @@ -82255,9 +83543,9 @@ in sources."to-regex-range-5.0.1" ]; }) - sources."@netlify/open-api-0.18.0" + sources."@netlify/open-api-0.18.1" sources."@netlify/plugin-edge-handlers-1.8.0" - sources."@netlify/run-utils-1.0.1" + sources."@netlify/run-utils-1.0.3" (sources."@netlify/zip-it-and-ship-it-1.3.12" // { dependencies = [ sources."resolve-2.0.0-next.1" @@ -82312,13 +83600,12 @@ in sources."micromatch-4.0.2" sources."slash-3.0.0" sources."to-regex-range-5.0.1" - sources."tslib-2.0.2" + sources."tslib-2.0.3" ]; }) (sources."@oclif/errors-1.3.3" // { dependencies = [ sources."clean-stack-3.0.0" - sources."fs-extra-9.0.1" sources."wrap-ansi-7.0.0" ]; }) @@ -82361,14 +83648,11 @@ in sources."universalify-0.1.2" ]; }) - (sources."@oclif/plugin-plugins-1.9.0" // { + (sources."@oclif/plugin-plugins-1.9.1" // { dependencies = [ - sources."fs-extra-7.0.1" - sources."jsonfile-4.0.0" - sources."npm-run-path-3.1.0" + sources."npm-run-path-4.0.1" sources."path-key-3.1.1" - sources."tslib-2.0.2" - sources."universalify-0.1.2" + sources."tslib-2.0.3" ]; }) sources."@oclif/screen-1.0.4" @@ -82433,7 +83717,7 @@ in sources."@types/istanbul-reports-1.1.2" sources."@types/minimatch-3.0.3" sources."@types/mkdirp-0.5.2" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."@types/node-fetch-2.5.7" sources."@types/normalize-package-data-2.4.0" sources."@types/resolve-1.17.1" @@ -82502,7 +83786,7 @@ in sources."at-least-node-1.0.0" sources."atob-2.1.2" sources."atob-lite-2.0.0" - (sources."aws-sdk-2.769.0" // { + (sources."aws-sdk-2.773.0" // { dependencies = [ sources."buffer-4.9.2" sources."uuid-3.3.2" @@ -82582,7 +83866,7 @@ in sources."cachedir-2.3.0" sources."call-me-maybe-1.0.1" sources."camelcase-5.3.1" - sources."caniuse-lite-1.0.30001144" + sources."caniuse-lite-1.0.30001148" sources."cardinal-2.1.1" sources."caw-2.0.1" (sources."chalk-2.4.2" // { @@ -82594,7 +83878,7 @@ in ]; }) sources."chardet-0.7.0" - (sources."chokidar-3.4.2" // { + (sources."chokidar-3.4.3" // { dependencies = [ sources."braces-3.0.2" sources."fill-range-7.0.1" @@ -82627,16 +83911,15 @@ in sources."cli-boxes-2.2.1" sources."cli-cursor-2.1.0" sources."cli-progress-3.8.2" - sources."cli-spinners-2.4.0" + sources."cli-spinners-2.5.0" (sources."cli-ux-5.5.0" // { dependencies = [ sources."ansi-escapes-4.3.1" sources."chalk-4.1.0" sources."clean-stack-3.0.0" sources."extract-stack-2.0.0" - sources."fs-extra-9.0.1" sources."supports-hyperlinks-2.1.0" - sources."tslib-2.0.2" + sources."tslib-2.0.3" sources."type-fest-0.11.0" ]; }) @@ -82648,7 +83931,7 @@ in sources."color-3.0.0" sources."color-convert-1.9.3" sources."color-name-1.1.3" - sources."color-string-1.5.3" + sources."color-string-1.5.4" sources."colors-1.4.0" sources."colorspace-1.1.2" sources."combined-stream-1.0.8" @@ -82829,7 +84112,7 @@ in }) sources."duplexer3-0.1.4" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.3.578" + sources."electron-to-chromium-1.3.582" sources."elf-tools-1.1.2" (sources."elliptic-6.5.3" // { dependencies = [ @@ -82846,7 +84129,7 @@ in sources."error-stack-parser-2.0.6" sources."es-abstract-1.18.0-next.1" sources."es-to-primitive-1.2.1" - sources."escalade-3.1.0" + sources."escalade-3.1.1" sources."escape-goat-2.1.1" sources."escape-html-1.0.3" sources."escape-string-regexp-4.0.0" @@ -82969,12 +84252,7 @@ in sources."from2-2.3.0" sources."from2-array-0.0.4" sources."fs-constants-1.0.0" - (sources."fs-extra-8.1.0" // { - dependencies = [ - sources."jsonfile-4.0.0" - sources."universalify-0.1.2" - ]; - }) + sources."fs-extra-9.0.1" sources."fs.realpath-1.0.0" sources."fsevents-2.1.3" sources."function-bind-1.1.1" @@ -82993,7 +84271,7 @@ in sources."get-proxy-2.1.0" sources."get-stream-5.2.0" sources."get-value-2.0.6" - (sources."gh-release-fetch-1.0.4" // { + (sources."gh-release-fetch-1.1.0" // { dependencies = [ sources."semver-5.7.1" ]; @@ -83062,7 +84340,7 @@ in ]; }) sources."hash.js-1.1.7" - (sources."hasha-5.2.1" // { + (sources."hasha-5.2.2" // { dependencies = [ sources."is-stream-2.0.0" ]; @@ -83082,7 +84360,7 @@ in ]; }) sources."http-proxy-1.18.1" - (sources."http-proxy-middleware-1.0.5" // { + (sources."http-proxy-middleware-1.0.6" // { dependencies = [ sources."braces-3.0.2" sources."fill-range-7.0.1" @@ -83132,7 +84410,6 @@ in ]; }) sources."into-stream-3.1.0" - sources."invariant-2.2.4" sources."ipaddr.js-1.9.1" sources."is-0.2.7" sources."is-accessor-descriptor-1.0.0" @@ -83205,9 +84482,9 @@ in sources."keyv-3.1.0" sources."kind-of-6.0.3" sources."kuler-2.0.0" - (sources."lambda-local-1.7.3" // { + (sources."lambda-local-1.7.4" // { dependencies = [ - sources."commander-5.1.0" + sources."commander-6.1.0" ]; }) sources."latest-version-5.1.0" @@ -83250,7 +84527,6 @@ in ]; }) sources."leven-3.1.0" - sources."levenary-1.1.1" sources."levn-0.3.0" sources."lines-and-columns-1.1.6" (sources."load-json-file-5.3.0" // { @@ -83297,7 +84573,6 @@ in sources."ms-2.1.2" ]; }) - sources."loose-envify-1.4.0" sources."lowercase-keys-1.0.1" sources."ltgt-2.2.1" sources."macos-release-2.4.1" @@ -83373,7 +84648,7 @@ in sources."natural-orderby-2.0.3" sources."negotiator-0.6.2" sources."nested-error-stacks-2.1.0" - (sources."netlify-4.7.0" // { + (sources."netlify-4.8.0" // { dependencies = [ sources."qs-6.9.4" ]; @@ -83387,7 +84662,7 @@ in sources."netlify-redirector-0.2.0" sources."nice-try-1.0.5" sources."node-fetch-2.6.1" - sources."node-releases-1.1.61" + sources."node-releases-1.1.63" sources."node-source-walk-4.2.0" sources."noop2-2.0.0" (sources."normalize-package-data-2.5.0" // { @@ -83565,7 +84840,7 @@ in sources."safe-buffer-5.1.2" ]; }) - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."redeyed-2.1.1" sources."regenerate-1.4.1" sources."regenerate-unicode-properties-8.2.0" @@ -83601,7 +84876,7 @@ in sources."reusify-1.0.4" sources."rimraf-3.0.2" sources."ripemd160-2.0.2" - sources."rollup-2.28.2" + sources."rollup-2.32.0" sources."rollup-plugin-node-builtins-2.1.2" sources."rollup-plugin-terser-7.0.2" sources."run-async-2.4.1" @@ -83792,7 +85067,7 @@ in ]; }) sources."term-size-2.2.0" - (sources."terser-5.3.4" // { + (sources."terser-5.3.6" // { dependencies = [ sources."source-map-0.7.3" ]; @@ -83838,7 +85113,7 @@ in ]; }) sources."triple-beam-1.3.0" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tsutils-3.17.1" sources."tunnel-agent-0.6.0" sources."type-check-0.3.2" @@ -83976,14 +85251,14 @@ in node-gyp = nodeEnv.buildNodePackage { name = "node-gyp"; packageName = "node-gyp"; - version = "7.1.0"; + version = "7.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/node-gyp/-/node-gyp-7.1.0.tgz"; - sha512 = "rjlHQlnl1dqiDZxZYiKqQdrjias7V+81OVR5PTzZioCBtWkNdrKy06M05HLKxy/pcKikKRCabeDRoZaEc6nIjw=="; + url = "https://registry.npmjs.org/node-gyp/-/node-gyp-7.1.2.tgz"; + sha512 = "CbpcIo7C3eMu3dL1c3d0xw449fHIGALIJsRP4DDPHpyiW8vcriNY7ubh9TE4zEKfSxscY7PjeFnshE7h75ynjQ=="; }; dependencies = [ sources."abbrev-1.1.1" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-regex-2.1.1" sources."aproba-1.2.0" sources."are-we-there-yet-1.1.5" @@ -84041,15 +85316,12 @@ in sources."minipass-3.1.3" sources."minizlib-2.1.2" sources."mkdirp-1.0.4" - sources."nopt-4.0.3" + sources."nopt-5.0.0" sources."npmlog-4.1.2" sources."number-is-nan-1.0.1" sources."oauth-sign-0.9.0" sources."object-assign-4.1.1" sources."once-1.4.0" - sources."os-homedir-1.0.2" - sources."os-tmpdir-1.0.2" - sources."osenv-0.1.5" sources."path-is-absolute-1.0.1" sources."performance-now-2.1.0" sources."process-nextick-args-2.0.1" @@ -84058,7 +85330,7 @@ in sources."qs-6.5.2" sources."readable-stream-2.3.7" sources."request-2.88.2" - sources."rimraf-2.7.1" + sources."rimraf-3.0.2" sources."safe-buffer-5.1.2" sources."safer-buffer-2.1.2" sources."semver-7.3.2" @@ -84252,7 +85524,7 @@ in sources."minimist-1.2.5" sources."mkdirp-0.5.5" sources."ms-2.0.0" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."negotiator-0.6.2" (sources."node-pre-gyp-0.6.39" // { dependencies = [ @@ -84492,16 +85764,16 @@ in node-red = nodeEnv.buildNodePackage { name = "node-red"; packageName = "node-red"; - version = "1.1.3"; + version = "1.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/node-red/-/node-red-1.1.3.tgz"; - sha512 = "U+bxzyjB66dwIm0DZwvCqy34A6CJICro8xNNbMqA8GWnNrY6/ZGuUrmNuApsH3n8stkOPB4CozdR9JpEXTqbtw=="; + url = "https://registry.npmjs.org/node-red/-/node-red-1.2.1.tgz"; + sha512 = "ZgxnaEMp2bJbsludpt3elaw/5yMznqjYklZE7eBwGErbNUVT3SmiSd0wNBO5j1QPiaqtGdSzqT2e45qzDzyiOg=="; }; dependencies = [ - sources."@babel/runtime-7.11.2" - sources."@node-red/editor-api-1.1.3" - sources."@node-red/editor-client-1.1.3" - (sources."@node-red/nodes-1.1.3" // { + sources."@babel/runtime-7.12.1" + sources."@node-red/editor-api-1.2.1" + sources."@node-red/editor-client-1.2.1" + (sources."@node-red/nodes-1.2.1" // { dependencies = [ sources."cookie-0.4.1" sources."http-errors-1.7.3" @@ -84515,9 +85787,9 @@ in }) ]; }) - sources."@node-red/registry-1.1.3" - sources."@node-red/runtime-1.1.3" - sources."@node-red/util-1.1.3" + sources."@node-red/registry-1.2.1" + sources."@node-red/runtime-1.2.1" + sources."@node-red/util-1.2.1" sources."abbrev-1.1.1" sources."accepts-1.3.7" (sources."agent-base-6.0.1" // { @@ -84526,12 +85798,13 @@ in sources."ms-2.1.2" ]; }) - sources."ajv-6.12.3" + sources."ajv-6.12.6" sources."ansi-regex-2.1.1" sources."append-field-1.0.0" sources."aproba-1.2.0" (sources."are-we-there-yet-1.1.5" // { dependencies = [ + sources."isarray-1.0.0" sources."readable-stream-2.3.7" sources."safe-buffer-5.1.2" sources."string_decoder-1.1.1" @@ -84543,11 +85816,13 @@ in sources."assert-plus-1.0.0" sources."async-0.1.22" sources."async-limiter-1.0.1" + sources."async-mutex-0.2.4" sources."asynckit-0.4.0" sources."aws-sign2-0.7.0" sources."aws4-1.10.1" sources."axios-0.19.2" sources."balanced-match-1.0.0" + sources."base64-js-1.3.1" (sources."basic-auth-2.0.1" // { dependencies = [ sources."safe-buffer-5.1.2" @@ -84555,49 +85830,38 @@ in }) (sources."bcrypt-3.0.6" // { dependencies = [ + sources."chownr-1.1.4" + sources."fs-minipass-1.2.7" + sources."minipass-2.9.0" + sources."minizlib-1.3.3" sources."nan-2.13.2" sources."node-pre-gyp-0.12.0" + sources."nopt-4.0.3" sources."semver-5.7.1" + sources."tar-4.4.13" + sources."yallist-3.1.1" ]; }) sources."bcrypt-pbkdf-1.0.2" sources."bcryptjs-2.4.3" - (sources."bl-1.2.3" // { + (sources."bl-4.0.3" // { dependencies = [ - (sources."readable-stream-2.3.7" // { - dependencies = [ - sources."safe-buffer-5.1.2" - ]; - }) - (sources."string_decoder-1.1.1" // { - dependencies = [ - sources."safe-buffer-5.1.2" - ]; - }) + sources."inherits-2.0.4" + sources."readable-stream-3.6.0" + sources."string_decoder-1.3.0" ]; }) sources."body-parser-1.19.0" sources."boolbase-1.0.0" sources."brace-expansion-1.1.11" + sources."buffer-5.6.0" sources."buffer-from-1.1.1" - (sources."busboy-0.2.14" // { - dependencies = [ - sources."isarray-0.0.1" - sources."readable-stream-1.1.14" - sources."string_decoder-0.10.31" - ]; - }) + sources."busboy-0.2.14" sources."bytes-3.1.0" - (sources."callback-stream-1.1.0" // { - dependencies = [ - sources."readable-stream-2.3.7" - sources."safe-buffer-5.1.2" - sources."string_decoder-1.1.1" - ]; - }) + sources."callback-stream-1.1.0" sources."caseless-0.12.0" sources."cheerio-0.22.0" - sources."chownr-1.1.4" + sources."chownr-2.0.0" sources."cli-table-0.3.1" sources."clone-2.1.2" sources."code-point-at-1.1.0" @@ -84607,6 +85871,7 @@ in sources."concat-map-0.0.1" (sources."concat-stream-1.6.2" // { dependencies = [ + sources."isarray-1.0.0" sources."readable-stream-2.3.7" sources."safe-buffer-5.1.2" sources."string_decoder-1.1.1" @@ -84637,19 +85902,14 @@ in sources."depd-1.1.2" sources."destroy-1.0.4" sources."detect-libc-1.0.3" - (sources."dicer-0.2.5" // { - dependencies = [ - sources."isarray-0.0.1" - sources."readable-stream-1.1.14" - sources."string_decoder-0.10.31" - ]; - }) + sources."dicer-0.2.5" sources."dom-serializer-0.1.1" sources."domelementtype-1.3.1" sources."domhandler-2.4.2" sources."domutils-1.5.1" (sources."duplexify-3.7.1" // { dependencies = [ + sources."isarray-1.0.0" sources."readable-stream-2.3.7" sources."safe-buffer-5.1.2" sources."string_decoder-1.1.1" @@ -84703,7 +85963,7 @@ in sources."forwarded-0.1.2" sources."fresh-0.5.2" sources."fs-extra-8.1.0" - sources."fs-minipass-1.2.7" + sources."fs-minipass-2.1.0" sources."fs.notify-0.0.4" sources."fs.realpath-1.0.0" sources."gauge-2.7.4" @@ -84712,6 +85972,7 @@ in sources."glob-parent-3.1.0" (sources."glob-stream-6.1.0" // { dependencies = [ + sources."isarray-1.0.0" sources."readable-stream-2.3.7" sources."safe-buffer-5.1.2" sources."string_decoder-1.1.1" @@ -84723,7 +85984,12 @@ in sources."has-unicode-2.0.1" sources."hash-sum-2.0.0" sources."help-me-1.1.0" - sources."htmlparser2-3.10.1" + (sources."htmlparser2-3.10.1" // { + dependencies = [ + sources."readable-stream-3.6.0" + sources."string_decoder-1.3.0" + ]; + }) sources."http-errors-1.7.2" sources."http-signature-1.2.0" (sources."https-proxy-agent-5.0.0" // { @@ -84734,6 +86000,7 @@ in }) sources."i18next-15.1.2" sources."iconv-lite-0.4.24" + sources."ieee754-1.1.13" sources."ignore-walk-3.0.3" sources."inflight-1.0.6" sources."inherits-2.0.3" @@ -84749,7 +86016,7 @@ in sources."is-unc-path-1.0.0" sources."is-utf8-0.2.1" sources."is-windows-1.0.2" - sources."isarray-1.0.0" + sources."isarray-0.0.1" sources."isstream-0.1.2" sources."js-yaml-3.14.0" sources."jsbn-0.1.1" @@ -84788,23 +86055,36 @@ in sources."mime-types-2.1.27" sources."minimatch-3.0.4" sources."minimist-1.2.5" - (sources."minipass-2.9.0" // { + (sources."minipass-3.1.3" // { dependencies = [ - sources."yallist-3.1.1" + sources."yallist-4.0.0" + ]; + }) + (sources."minizlib-2.1.2" // { + dependencies = [ + sources."yallist-4.0.0" ]; }) - sources."minizlib-1.3.3" sources."mkdirp-0.5.5" sources."moment-2.29.1" sources."moment-timezone-0.5.31" - (sources."mqtt-2.18.8" // { + (sources."mqtt-4.2.1" // { dependencies = [ + sources."debug-4.3.0" + sources."isarray-1.0.0" + sources."ms-2.1.2" sources."readable-stream-2.3.7" sources."safe-buffer-5.1.2" sources."string_decoder-1.1.1" + sources."ws-7.3.1" + ]; + }) + (sources."mqtt-packet-6.6.0" // { + dependencies = [ + sources."debug-4.3.0" + sources."ms-2.1.2" ]; }) - sources."mqtt-packet-5.6.1" sources."ms-2.0.0" sources."multer-1.4.2" sources."mustache-4.0.1" @@ -84820,7 +86100,14 @@ in sources."next-tick-1.0.0" (sources."node-pre-gyp-0.14.0" // { dependencies = [ + sources."chownr-1.1.4" + sources."fs-minipass-1.2.7" + sources."minipass-2.9.0" + sources."minizlib-1.3.3" + sources."nopt-4.0.3" sources."semver-5.7.1" + sources."tar-4.4.13" + sources."yallist-3.1.1" ]; }) (sources."node-red-admin-0.2.6" // { @@ -84830,7 +86117,7 @@ in }) sources."node-red-node-rbe-0.2.9" sources."node-red-node-tail-0.1.1" - sources."nopt-4.0.3" + sources."nopt-5.0.0" sources."npm-bundled-1.1.1" sources."npm-normalize-package-bin-1.0.1" sources."npm-packlist-1.4.8" @@ -84845,6 +86132,7 @@ in sources."once-1.4.0" (sources."ordered-read-streams-1.0.1" // { dependencies = [ + sources."isarray-1.0.0" sources."readable-stream-2.3.7" sources."safe-buffer-5.1.2" sources."string_decoder-1.1.1" @@ -84880,7 +86168,7 @@ in sources."raw-body-2.4.0" sources."rc-1.2.8" sources."read-1.0.7" - sources."readable-stream-3.6.0" + sources."readable-stream-1.1.14" sources."regenerator-runtime-0.13.7" sources."reinterval-1.1.0" sources."remove-trailing-separator-1.1.0" @@ -84905,24 +86193,31 @@ in sources."set-blocking-2.0.0" sources."setprototypeof-1.1.1" sources."signal-exit-3.0.3" - sources."split2-2.2.0" + (sources."split2-3.2.2" // { + dependencies = [ + sources."readable-stream-3.6.0" + sources."string_decoder-1.3.0" + ]; + }) sources."sprintf-js-1.0.3" sources."sshpk-1.16.1" sources."statuses-1.5.0" sources."stream-shift-1.0.1" sources."streamsearch-0.1.2" sources."string-width-1.0.2" - sources."string_decoder-1.3.0" + sources."string_decoder-0.10.31" sources."strip-ansi-3.0.1" sources."strip-json-comments-2.0.1" sources."tail-2.0.4" - (sources."tar-4.4.13" // { + (sources."tar-6.0.5" // { dependencies = [ - sources."yallist-3.1.1" + sources."mkdirp-1.0.4" + sources."yallist-4.0.0" ]; }) (sources."through2-2.0.5" // { dependencies = [ + sources."isarray-1.0.0" sources."readable-stream-2.3.7" sources."safe-buffer-5.1.2" sources."string_decoder-1.1.1" @@ -84936,15 +86231,15 @@ in sources."punycode-1.4.1" ]; }) + sources."tslib-2.0.3" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."type-1.2.0" sources."type-is-1.6.18" sources."typedarray-0.0.6" - sources."uglify-js-3.10.0" + sources."uglify-js-3.11.2" sources."uid-safe-2.1.5" sources."uid2-0.0.3" - sources."ultron-1.1.1" sources."unc-path-regex-0.1.2" sources."unique-stream-2.3.1" sources."universalify-0.1.2" @@ -84955,25 +86250,6 @@ in sources."uuid-3.4.0" sources."vary-1.1.2" sources."verror-1.10.0" - (sources."websocket-stream-5.5.2" // { - dependencies = [ - (sources."readable-stream-2.3.7" // { - dependencies = [ - sources."safe-buffer-5.1.2" - ]; - }) - (sources."string_decoder-1.1.1" // { - dependencies = [ - sources."safe-buffer-5.1.2" - ]; - }) - (sources."ws-3.3.3" // { - dependencies = [ - sources."safe-buffer-5.1.2" - ]; - }) - ]; - }) sources."when-3.7.8" sources."wide-align-1.1.3" sources."wrappy-1.0.2" @@ -85003,7 +86279,7 @@ in }; dependencies = [ sources."abbrev-1.1.1" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-regex-2.1.1" sources."aproba-1.2.0" sources."are-we-there-yet-1.1.5" @@ -85186,10 +86462,10 @@ in nodemon = nodeEnv.buildNodePackage { name = "nodemon"; packageName = "nodemon"; - version = "2.0.4"; + version = "2.0.5"; src = fetchurl { - url = "https://registry.npmjs.org/nodemon/-/nodemon-2.0.4.tgz"; - sha512 = "Ltced+hIfTmaS28Zjv1BM552oQ3dbwPqI4+zI0SLgq+wpJhSyqgYude/aZa/3i31VCQWMfXJVxvu86abcam3uQ=="; + url = "https://registry.npmjs.org/nodemon/-/nodemon-2.0.5.tgz"; + sha512 = "6/jqtZvJdk092pVnD2AIH19KQ9GQZAKOZVy/yT1ueL6aoV+Ix7a1lVZStXzvEh0fP4zE41DDWlkVoHjR6WlozA=="; }; dependencies = [ sources."@sindresorhus/is-0.14.0" @@ -85221,7 +86497,7 @@ in sources."supports-color-7.2.0" ]; }) - sources."chokidar-3.4.2" + sources."chokidar-3.4.3" sources."ci-info-2.0.0" sources."cli-boxes-2.2.1" sources."clone-response-1.0.2" @@ -85294,7 +86570,7 @@ in sources."pump-3.0.0" sources."pupa-2.0.1" sources."rc-1.2.8" - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."registry-auth-token-4.2.0" sources."registry-url-5.1.0" sources."responselike-1.0.2" @@ -85367,10 +86643,10 @@ in npm-check-updates = nodeEnv.buildNodePackage { name = "npm-check-updates"; packageName = "npm-check-updates"; - version = "9.0.4"; + version = "9.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/npm-check-updates/-/npm-check-updates-9.0.4.tgz"; - sha512 = "kqevC9RXRsaosPZHg4Pm5CNwnOAG2ymvhU7Q3QIX01SDUID4fpoSAQIuXQH9V3Nnu96kSUz5bDPzQSku33Mz0A=="; + url = "https://registry.npmjs.org/npm-check-updates/-/npm-check-updates-9.1.0.tgz"; + sha512 = "sx/hbKWAMPgflMffQLZXYt9uZeOK7Rnd6DLoL+8n2Sxe5yn5MMD4kXtkH5NXqJ3OxVA4JgnVbL7rvXhJKGMZrg=="; }; dependencies = [ sources."@npmcli/ci-detect-1.3.0" @@ -85387,7 +86663,7 @@ in sources."agent-base-6.0.1" sources."agentkeepalive-4.1.3" sources."aggregate-error-3.1.0" - sources."ajv-6.12.5" + sources."ajv-6.12.6" (sources."ansi-align-3.0.0" // { dependencies = [ sources."ansi-regex-4.1.0" @@ -85492,7 +86768,7 @@ in sources."has-flag-4.0.0" sources."has-unicode-2.0.1" sources."has-yarn-2.1.0" - sources."hosted-git-info-3.0.5" + sources."hosted-git-info-3.0.7" sources."http-cache-semantics-4.1.0" sources."http-proxy-agent-4.0.1" sources."http-signature-1.2.0" @@ -85554,7 +86830,7 @@ in sources."semver-6.3.0" ]; }) - sources."make-fetch-happen-8.0.9" + sources."make-fetch-happen-8.0.10" sources."mime-db-1.44.0" sources."mime-types-2.1.27" sources."mimic-response-1.0.1" @@ -85570,28 +86846,21 @@ in sources."minizlib-2.1.2" sources."mkdirp-1.0.4" sources."ms-2.1.2" - (sources."node-gyp-7.1.0" // { - dependencies = [ - sources."rimraf-2.7.1" - ]; - }) - sources."nopt-4.0.3" + sources."node-gyp-7.1.2" + sources."nopt-5.0.0" sources."normalize-url-4.5.0" sources."npm-bundled-1.1.1" sources."npm-install-checks-4.0.0" sources."npm-normalize-package-bin-1.0.1" - sources."npm-package-arg-8.0.1" + sources."npm-package-arg-8.1.0" sources."npm-packlist-2.1.2" sources."npm-pick-manifest-6.1.0" - sources."npm-registry-fetch-8.1.4" + sources."npm-registry-fetch-8.1.5" sources."npmlog-4.1.2" sources."number-is-nan-1.0.1" sources."oauth-sign-0.9.0" sources."object-assign-4.1.1" sources."once-1.4.0" - sources."os-homedir-1.0.2" - sources."os-tmpdir-1.0.2" - sources."osenv-0.1.5" sources."p-cancelable-1.1.0" sources."p-limit-3.0.2" sources."p-locate-5.0.0" @@ -85710,7 +86979,7 @@ in }; dependencies = [ sources."abbrev-1.1.1" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-regex-2.1.1" sources."aproba-1.2.0" sources."are-we-there-yet-1.1.5" @@ -85924,14 +87193,14 @@ in }; dependencies = [ sources."@babel/code-frame-7.10.4" - sources."@babel/compat-data-7.11.0" - (sources."@babel/core-7.11.6" // { + sources."@babel/compat-data-7.12.1" + (sources."@babel/core-7.12.3" // { dependencies = [ sources."json5-2.1.3" sources."source-map-0.5.7" ]; }) - (sources."@babel/generator-7.11.6" // { + (sources."@babel/generator-7.12.1" // { dependencies = [ sources."source-map-0.5.7" ]; @@ -85939,98 +87208,99 @@ in sources."@babel/helper-annotate-as-pure-7.10.4" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.10.4" sources."@babel/helper-builder-react-jsx-7.10.4" - sources."@babel/helper-builder-react-jsx-experimental-7.11.5" - sources."@babel/helper-compilation-targets-7.10.4" - sources."@babel/helper-create-class-features-plugin-7.10.5" - sources."@babel/helper-create-regexp-features-plugin-7.10.4" + sources."@babel/helper-builder-react-jsx-experimental-7.12.1" + sources."@babel/helper-compilation-targets-7.12.1" + sources."@babel/helper-create-class-features-plugin-7.12.1" + sources."@babel/helper-create-regexp-features-plugin-7.12.1" sources."@babel/helper-define-map-7.10.5" - sources."@babel/helper-explode-assignable-expression-7.11.4" + sources."@babel/helper-explode-assignable-expression-7.12.1" sources."@babel/helper-function-name-7.10.4" sources."@babel/helper-get-function-arity-7.10.4" sources."@babel/helper-hoist-variables-7.10.4" - sources."@babel/helper-member-expression-to-functions-7.11.0" - sources."@babel/helper-module-imports-7.10.4" - sources."@babel/helper-module-transforms-7.11.0" + sources."@babel/helper-member-expression-to-functions-7.12.1" + sources."@babel/helper-module-imports-7.12.1" + sources."@babel/helper-module-transforms-7.12.1" sources."@babel/helper-optimise-call-expression-7.10.4" sources."@babel/helper-plugin-utils-7.10.4" sources."@babel/helper-regex-7.10.5" - sources."@babel/helper-remap-async-to-generator-7.11.4" - sources."@babel/helper-replace-supers-7.10.4" - sources."@babel/helper-simple-access-7.10.4" - sources."@babel/helper-skip-transparent-expression-wrappers-7.11.0" + sources."@babel/helper-remap-async-to-generator-7.12.1" + sources."@babel/helper-replace-supers-7.12.1" + sources."@babel/helper-simple-access-7.12.1" + sources."@babel/helper-skip-transparent-expression-wrappers-7.12.1" sources."@babel/helper-split-export-declaration-7.11.0" sources."@babel/helper-validator-identifier-7.10.4" - sources."@babel/helper-wrap-function-7.10.4" - sources."@babel/helpers-7.10.4" + sources."@babel/helper-validator-option-7.12.1" + sources."@babel/helper-wrap-function-7.12.3" + sources."@babel/helpers-7.12.1" sources."@babel/highlight-7.10.4" - sources."@babel/parser-7.11.5" - sources."@babel/plugin-proposal-async-generator-functions-7.10.5" - sources."@babel/plugin-proposal-class-properties-7.10.4" - sources."@babel/plugin-proposal-dynamic-import-7.10.4" - sources."@babel/plugin-proposal-export-namespace-from-7.10.4" - sources."@babel/plugin-proposal-json-strings-7.10.4" - sources."@babel/plugin-proposal-logical-assignment-operators-7.11.0" - sources."@babel/plugin-proposal-nullish-coalescing-operator-7.10.4" - sources."@babel/plugin-proposal-numeric-separator-7.10.4" - sources."@babel/plugin-proposal-object-rest-spread-7.11.0" - sources."@babel/plugin-proposal-optional-catch-binding-7.10.4" - sources."@babel/plugin-proposal-optional-chaining-7.11.0" - sources."@babel/plugin-proposal-private-methods-7.10.4" - sources."@babel/plugin-proposal-unicode-property-regex-7.10.4" + sources."@babel/parser-7.12.3" + sources."@babel/plugin-proposal-async-generator-functions-7.12.1" + sources."@babel/plugin-proposal-class-properties-7.12.1" + sources."@babel/plugin-proposal-dynamic-import-7.12.1" + sources."@babel/plugin-proposal-export-namespace-from-7.12.1" + sources."@babel/plugin-proposal-json-strings-7.12.1" + sources."@babel/plugin-proposal-logical-assignment-operators-7.12.1" + sources."@babel/plugin-proposal-nullish-coalescing-operator-7.12.1" + sources."@babel/plugin-proposal-numeric-separator-7.12.1" + sources."@babel/plugin-proposal-object-rest-spread-7.12.1" + sources."@babel/plugin-proposal-optional-catch-binding-7.12.1" + sources."@babel/plugin-proposal-optional-chaining-7.12.1" + sources."@babel/plugin-proposal-private-methods-7.12.1" + sources."@babel/plugin-proposal-unicode-property-regex-7.12.1" sources."@babel/plugin-syntax-async-generators-7.8.4" - sources."@babel/plugin-syntax-class-properties-7.10.4" + sources."@babel/plugin-syntax-class-properties-7.12.1" sources."@babel/plugin-syntax-dynamic-import-7.8.3" sources."@babel/plugin-syntax-export-namespace-from-7.8.3" - sources."@babel/plugin-syntax-flow-7.10.4" + sources."@babel/plugin-syntax-flow-7.12.1" sources."@babel/plugin-syntax-json-strings-7.8.3" - sources."@babel/plugin-syntax-jsx-7.10.4" + sources."@babel/plugin-syntax-jsx-7.12.1" sources."@babel/plugin-syntax-logical-assignment-operators-7.10.4" sources."@babel/plugin-syntax-nullish-coalescing-operator-7.8.3" sources."@babel/plugin-syntax-numeric-separator-7.10.4" sources."@babel/plugin-syntax-object-rest-spread-7.8.3" sources."@babel/plugin-syntax-optional-catch-binding-7.8.3" sources."@babel/plugin-syntax-optional-chaining-7.8.3" - sources."@babel/plugin-syntax-top-level-await-7.10.4" - sources."@babel/plugin-transform-arrow-functions-7.10.4" - sources."@babel/plugin-transform-async-to-generator-7.10.4" - sources."@babel/plugin-transform-block-scoped-functions-7.10.4" - sources."@babel/plugin-transform-block-scoping-7.11.1" - sources."@babel/plugin-transform-classes-7.10.4" - sources."@babel/plugin-transform-computed-properties-7.10.4" - sources."@babel/plugin-transform-destructuring-7.10.4" - sources."@babel/plugin-transform-dotall-regex-7.10.4" - sources."@babel/plugin-transform-duplicate-keys-7.10.4" - sources."@babel/plugin-transform-exponentiation-operator-7.10.4" - sources."@babel/plugin-transform-flow-strip-types-7.10.4" - sources."@babel/plugin-transform-for-of-7.10.4" - sources."@babel/plugin-transform-function-name-7.10.4" - sources."@babel/plugin-transform-literals-7.10.4" - sources."@babel/plugin-transform-member-expression-literals-7.10.4" - sources."@babel/plugin-transform-modules-amd-7.10.5" - sources."@babel/plugin-transform-modules-commonjs-7.10.4" - sources."@babel/plugin-transform-modules-systemjs-7.10.5" - sources."@babel/plugin-transform-modules-umd-7.10.4" - sources."@babel/plugin-transform-named-capturing-groups-regex-7.10.4" - sources."@babel/plugin-transform-new-target-7.10.4" - sources."@babel/plugin-transform-object-super-7.10.4" - sources."@babel/plugin-transform-parameters-7.10.5" - sources."@babel/plugin-transform-property-literals-7.10.4" - sources."@babel/plugin-transform-react-jsx-7.10.4" - sources."@babel/plugin-transform-regenerator-7.10.4" - sources."@babel/plugin-transform-reserved-words-7.10.4" - sources."@babel/plugin-transform-shorthand-properties-7.10.4" - sources."@babel/plugin-transform-spread-7.11.0" - sources."@babel/plugin-transform-sticky-regex-7.10.4" - sources."@babel/plugin-transform-template-literals-7.10.5" - sources."@babel/plugin-transform-typeof-symbol-7.10.4" - sources."@babel/plugin-transform-unicode-escapes-7.10.4" - sources."@babel/plugin-transform-unicode-regex-7.10.4" - sources."@babel/preset-env-7.11.5" + sources."@babel/plugin-syntax-top-level-await-7.12.1" + sources."@babel/plugin-transform-arrow-functions-7.12.1" + sources."@babel/plugin-transform-async-to-generator-7.12.1" + sources."@babel/plugin-transform-block-scoped-functions-7.12.1" + sources."@babel/plugin-transform-block-scoping-7.12.1" + sources."@babel/plugin-transform-classes-7.12.1" + sources."@babel/plugin-transform-computed-properties-7.12.1" + sources."@babel/plugin-transform-destructuring-7.12.1" + sources."@babel/plugin-transform-dotall-regex-7.12.1" + sources."@babel/plugin-transform-duplicate-keys-7.12.1" + sources."@babel/plugin-transform-exponentiation-operator-7.12.1" + sources."@babel/plugin-transform-flow-strip-types-7.12.1" + sources."@babel/plugin-transform-for-of-7.12.1" + sources."@babel/plugin-transform-function-name-7.12.1" + sources."@babel/plugin-transform-literals-7.12.1" + sources."@babel/plugin-transform-member-expression-literals-7.12.1" + sources."@babel/plugin-transform-modules-amd-7.12.1" + sources."@babel/plugin-transform-modules-commonjs-7.12.1" + sources."@babel/plugin-transform-modules-systemjs-7.12.1" + sources."@babel/plugin-transform-modules-umd-7.12.1" + sources."@babel/plugin-transform-named-capturing-groups-regex-7.12.1" + sources."@babel/plugin-transform-new-target-7.12.1" + sources."@babel/plugin-transform-object-super-7.12.1" + sources."@babel/plugin-transform-parameters-7.12.1" + sources."@babel/plugin-transform-property-literals-7.12.1" + sources."@babel/plugin-transform-react-jsx-7.12.1" + sources."@babel/plugin-transform-regenerator-7.12.1" + sources."@babel/plugin-transform-reserved-words-7.12.1" + sources."@babel/plugin-transform-shorthand-properties-7.12.1" + sources."@babel/plugin-transform-spread-7.12.1" + sources."@babel/plugin-transform-sticky-regex-7.12.1" + sources."@babel/plugin-transform-template-literals-7.12.1" + sources."@babel/plugin-transform-typeof-symbol-7.12.1" + sources."@babel/plugin-transform-unicode-escapes-7.12.1" + sources."@babel/plugin-transform-unicode-regex-7.12.1" + sources."@babel/preset-env-7.12.1" sources."@babel/preset-modules-0.1.4" - sources."@babel/runtime-7.11.2" + sources."@babel/runtime-7.12.1" sources."@babel/template-7.10.4" - sources."@babel/traverse-7.11.5" - sources."@babel/types-7.11.5" + sources."@babel/traverse-7.12.1" + sources."@babel/types-7.12.1" sources."@iarna/toml-2.2.5" sources."@mrmlnc/readdir-enhanced-2.2.1" sources."@nodelib/fs.stat-1.1.3" @@ -86048,7 +87318,7 @@ in ]; }) sources."acorn-walk-6.2.0" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."alphanum-sort-1.0.2" sources."ansi-regex-3.0.0" sources."ansi-styles-3.2.1" @@ -86148,7 +87418,7 @@ in sources."caller-path-2.0.0" sources."callsites-2.0.0" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001144" + sources."caniuse-lite-1.0.30001148" sources."caseless-0.12.0" sources."chalk-2.4.2" sources."chokidar-2.1.8" @@ -86159,10 +87429,10 @@ in sources."clone-2.1.2" sources."coa-2.0.2" sources."collection-visit-1.0.0" - sources."color-3.1.2" + sources."color-3.1.3" sources."color-convert-1.9.3" sources."color-name-1.1.3" - sources."color-string-1.5.3" + sources."color-string-1.5.4" sources."combined-stream-1.0.8" sources."command-exists-1.2.9" sources."commander-2.20.3" @@ -86212,7 +87482,7 @@ in sources."css-select-base-adapter-0.1.1" sources."css-selector-tokenizer-0.7.3" sources."css-tree-1.0.0-alpha.37" - sources."css-what-3.4.1" + sources."css-what-3.4.2" sources."cssesc-3.0.0" sources."cssnano-4.1.10" sources."cssnano-preset-default-4.0.7" @@ -86268,7 +87538,7 @@ in (sources."dom-serializer-0.2.2" // { dependencies = [ sources."domelementtype-2.0.2" - sources."entities-2.0.3" + sources."entities-2.1.0" ]; }) sources."domain-browser-1.2.0" @@ -86282,7 +87552,7 @@ in sources."duplexer2-0.1.4" sources."ecc-jsbn-0.1.2" sources."ee-first-1.1.1" - sources."electron-to-chromium-1.3.578" + sources."electron-to-chromium-1.3.582" (sources."elliptic-6.5.3" // { dependencies = [ sources."bn.js-4.11.9" @@ -86294,7 +87564,7 @@ in sources."error-ex-1.3.2" sources."es-abstract-1.18.0-next.1" sources."es-to-primitive-1.2.1" - sources."escalade-3.1.0" + sources."escalade-3.1.1" sources."escape-html-1.0.3" sources."escape-string-regexp-1.0.5" sources."escodegen-1.9.1" @@ -86380,9 +87650,9 @@ in sources."html-comment-regex-1.1.2" sources."html-encoding-sniffer-1.0.2" sources."html-tags-1.2.0" - (sources."htmlnano-0.2.6" // { + (sources."htmlnano-0.2.7" // { dependencies = [ - sources."posthtml-0.13.3" + sources."posthtml-0.13.4" sources."posthtml-parser-0.5.0" sources."terser-4.8.0" ]; @@ -86402,7 +87672,6 @@ in sources."indexes-of-1.0.1" sources."inflight-1.0.6" sources."inherits-2.0.4" - sources."invariant-2.2.4" sources."is-absolute-url-2.1.0" (sources."is-accessor-descriptor-1.0.0" // { dependencies = [ @@ -86469,8 +87738,6 @@ in sources."json5-1.0.1" sources."jsprim-1.4.1" sources."kind-of-3.2.2" - sources."leven-3.1.0" - sources."levenary-1.1.1" sources."levn-0.3.0" sources."lodash-4.17.20" sources."lodash.clone-4.5.0" @@ -86478,7 +87745,6 @@ in sources."lodash.sortby-4.7.0" sources."lodash.uniq-4.5.0" sources."log-symbols-2.2.0" - sources."loose-envify-1.4.0" sources."magic-string-0.22.5" sources."map-cache-0.2.2" sources."map-visit-1.0.0" @@ -86518,7 +87784,7 @@ in }) sources."mkdirp-0.5.5" sources."ms-2.1.2" - sources."nan-2.14.1" + sources."nan-2.14.2" (sources."nanomatch-1.2.13" // { dependencies = [ sources."define-property-2.0.2" @@ -86535,8 +87801,7 @@ in sources."punycode-1.4.1" ]; }) - sources."node-releases-1.1.61" - sources."normalize-html-whitespace-1.0.0" + sources."node-releases-1.1.63" sources."normalize-path-3.0.0" sources."normalize-url-3.3.0" sources."nth-check-1.0.2" @@ -86699,6 +87964,7 @@ in sources."jsesc-0.5.0" ]; }) + sources."relateurl-0.2.7" sources."remove-trailing-separator-1.1.0" sources."repeat-element-1.1.3" sources."repeat-string-1.6.1" @@ -86922,7 +88188,7 @@ in sources."negotiator-0.6.2" ]; }) - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-regex-4.1.0" sources."ansi-styles-3.2.1" sources."argparse-1.0.10" @@ -87075,7 +88341,7 @@ in sources."ms-2.0.0" sources."msgpack5-3.6.0" sources."mv-2.1.1" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."ncp-2.0.0" sources."negotiator-git+https://github.com/arlolra/negotiator.git#full-parse-access" sources."neo-async-2.6.2" @@ -87170,7 +88436,7 @@ in sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."type-is-1.6.18" - sources."uglify-js-3.11.1" + sources."uglify-js-3.11.3" sources."unix-dgram-2.0.4" sources."unpipe-1.0.0" sources."uri-js-4.4.0" @@ -87817,7 +89083,7 @@ in sources."accepts-1.3.7" sources."addr-to-ip-port-1.5.1" sources."after-0.8.2" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."archiver-3.1.1" (sources."archiver-utils-2.1.0" // { dependencies = [ @@ -88272,7 +89538,7 @@ in sources."bytes-3.1.0" sources."chalk-3.0.0" sources."charm-0.1.2" - sources."chokidar-3.4.2" + sources."chokidar-3.4.3" sources."cli-tableau-2.0.1" sources."co-4.6.0" sources."color-convert-2.0.1" @@ -88409,7 +89675,7 @@ in sources."string_decoder-1.1.1" ]; }) - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."require-in-the-middle-5.0.3" sources."resolve-1.17.0" sources."run-series-1.1.8" @@ -88433,11 +89699,11 @@ in sources."statuses-1.5.0" sources."string_decoder-0.10.31" sources."supports-color-7.2.0" - sources."systeminformation-4.27.7" + sources."systeminformation-4.27.10" sources."thunkify-2.1.2" sources."to-regex-range-5.0.1" sources."toidentifier-1.0.0" - sources."tslib-2.0.2" + sources."tslib-2.0.3" sources."tv4-1.3.0" sources."type-check-0.3.2" sources."unpipe-1.0.0" @@ -88468,10 +89734,10 @@ in pnpm = nodeEnv.buildNodePackage { name = "pnpm"; packageName = "pnpm"; - version = "5.8.0"; + version = "5.9.3"; src = fetchurl { - url = "https://registry.npmjs.org/pnpm/-/pnpm-5.8.0.tgz"; - sha512 = "J2rAxEXnohwcDkR4KNI6UsYhDs9hJ/tje/BahHpXawi406pmxd6caJUXfRxZPbKvKdyVqfBRKhlX1vyhYbM8lQ=="; + url = "https://registry.npmjs.org/pnpm/-/pnpm-5.9.3.tgz"; + sha512 = "MyN/jR/WfM7SPnnrkaEoQ2+cOhoSAnhzJ2sDOF7yZKyjh0sYuvGcijeZYbyWJ0r5C0vtBPV5SRtiLaHvwYWZBg=="; }; buildInputs = globalBuildInputs; meta = { @@ -88486,39 +89752,49 @@ in postcss-cli = nodeEnv.buildNodePackage { name = "postcss-cli"; packageName = "postcss-cli"; - version = "8.0.0"; + version = "8.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/postcss-cli/-/postcss-cli-8.0.0.tgz"; - sha512 = "WgQIz1tc8htjob2DULE6dTssDzItuBh3UbscdrAlvid7M6X2WBZUrHCaLMtIuFkHFijAnimIq3nkpXV6FdDTSg=="; + url = "https://registry.npmjs.org/postcss-cli/-/postcss-cli-8.1.0.tgz"; + sha512 = "FYuV5zyYX53X5RywInxjWLqHZ4oCBC3nDwrHYU3Z75mFqUo5IHfbeY593heWSagG90nPnXq3tXCck8+2CUl8EA=="; }; dependencies = [ + sources."@babel/code-frame-7.10.4" + sources."@babel/helper-validator-identifier-7.10.4" + (sources."@babel/highlight-7.10.4" // { + dependencies = [ + sources."ansi-styles-3.2.1" + sources."chalk-2.4.2" + sources."color-convert-1.9.3" + sources."color-name-1.1.3" + sources."has-flag-3.0.0" + sources."supports-color-5.5.0" + ]; + }) sources."@nodelib/fs.scandir-2.1.3" sources."@nodelib/fs.stat-2.0.3" sources."@nodelib/fs.walk-1.2.4" + sources."@types/parse-json-4.0.0" sources."ansi-regex-5.0.0" sources."ansi-styles-4.3.0" sources."anymatch-3.1.1" - sources."argparse-1.0.10" sources."array-union-2.1.0" sources."at-least-node-1.0.0" sources."binary-extensions-2.1.0" sources."braces-3.0.2" - sources."caller-callsite-2.0.0" - sources."caller-path-2.0.0" - sources."callsites-2.0.0" + sources."callsites-3.1.0" sources."chalk-4.1.0" - sources."chokidar-3.4.2" - sources."cliui-7.0.1" + sources."chokidar-3.4.3" + sources."cliui-7.0.3" sources."color-convert-2.0.1" sources."color-name-1.1.4" sources."colorette-1.2.1" - sources."cosmiconfig-5.2.1" + sources."cosmiconfig-7.0.0" sources."dependency-graph-0.9.0" sources."dir-glob-3.0.1" sources."emoji-regex-8.0.0" sources."error-ex-1.3.2" - sources."escalade-3.1.0" - sources."esprima-4.0.1" + sources."escalade-3.1.1" + sources."escape-string-regexp-1.0.5" sources."fast-glob-3.2.4" sources."fastq-1.8.0" sources."fill-range-7.0.1" @@ -88531,19 +89807,23 @@ in sources."graceful-fs-4.2.4" sources."has-flag-4.0.0" sources."ignore-5.1.8" - sources."import-cwd-2.1.0" - sources."import-fresh-2.0.0" - sources."import-from-2.1.0" + sources."import-cwd-3.0.0" + sources."import-fresh-3.2.1" + (sources."import-from-3.0.0" // { + dependencies = [ + sources."resolve-from-5.0.0" + ]; + }) sources."is-arrayish-0.2.1" sources."is-binary-path-2.1.0" - sources."is-directory-0.3.1" sources."is-extglob-2.1.1" sources."is-fullwidth-code-point-3.0.0" sources."is-glob-4.0.1" sources."is-number-7.0.0" - sources."js-yaml-3.14.0" - sources."json-parse-better-errors-1.0.2" + sources."js-tokens-4.0.0" + sources."json-parse-even-better-errors-2.3.1" sources."jsonfile-6.0.1" + sources."lines-and-columns-1.1.6" sources."lodash.difference-4.5.0" sources."lodash.forown-4.4.0" sources."lodash.get-4.4.2" @@ -88553,30 +89833,31 @@ in sources."merge2-1.4.1" sources."micromatch-4.0.2" sources."normalize-path-3.0.0" - sources."parse-json-4.0.0" + sources."parent-module-1.0.1" + sources."parse-json-5.1.0" sources."path-type-4.0.0" sources."picomatch-2.2.2" sources."pify-2.3.0" - sources."postcss-load-config-2.1.2" + sources."postcss-load-config-3.0.0" sources."postcss-reporter-7.0.1" sources."pretty-hrtime-1.0.3" sources."read-cache-1.0.0" - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."require-directory-2.1.1" - sources."resolve-from-3.0.0" + sources."resolve-from-4.0.0" sources."reusify-1.0.4" sources."run-parallel-1.1.9" sources."slash-3.0.0" - sources."sprintf-js-1.0.3" sources."string-width-4.2.0" sources."strip-ansi-6.0.0" sources."supports-color-7.2.0" sources."to-regex-range-5.0.1" sources."universalify-1.0.0" sources."wrap-ansi-7.0.0" - sources."y18n-5.0.2" - sources."yargs-16.0.3" - sources."yargs-parser-20.2.1" + sources."y18n-5.0.4" + sources."yaml-1.10.0" + sources."yargs-16.1.0" + sources."yargs-parser-20.2.3" ]; buildInputs = globalBuildInputs; meta = { @@ -88770,7 +90051,7 @@ in sources."inflight-1.0.6" sources."inherits-2.0.4" sources."inline-source-map-0.6.2" - (sources."insert-module-globals-7.2.0" // { + (sources."insert-module-globals-7.2.1" // { dependencies = [ sources."concat-stream-1.6.2" ]; @@ -88980,10 +90261,10 @@ in pyright = nodeEnv.buildNodePackage { name = "pyright"; packageName = "pyright"; - version = "1.1.78"; + version = "1.1.79"; src = fetchurl { - url = "https://registry.npmjs.org/pyright/-/pyright-1.1.78.tgz"; - sha512 = "sKh6AbVIysi0CzgL3M8iaKBy/2yopDxyB0VptIYTIGpGcGKJce0KrsJ7OSR3bgx3S4MYMWKF004ws0tosJy+kA=="; + url = "https://registry.npmjs.org/pyright/-/pyright-1.1.79.tgz"; + sha512 = "WriY7VGjg9CzhxMUfDf8bIBRfXWeVj/kgiAAJ783wiQuUwy5IwMlZgR4ZyAGYBztMH+uRdiG4HCgt30ELYeeNg=="; }; buildInputs = globalBuildInputs; meta = { @@ -89172,6 +90453,137 @@ in bypassCache = true; reconstructLock = true; }; + readability-cli = nodeEnv.buildNodePackage { + name = "readability-cli"; + packageName = "readability-cli"; + version = "1.1.5"; + src = fetchurl { + url = "https://registry.npmjs.org/readability-cli/-/readability-cli-1.1.5.tgz"; + sha512 = "xMbRC9qGezXO4dqRlTpSfC/o4XuUpsRq0yLGEumtulcNVz1RJyOEbovgnqmOhulZYSgsLbRCm8gZ0nQ5n0up6w=="; + }; + dependencies = [ + sources."@mozilla/readability-0.3.0" + sources."abab-2.0.5" + sources."acorn-7.4.1" + sources."acorn-globals-6.0.0" + sources."acorn-walk-7.2.0" + sources."ajv-6.12.6" + sources."asn1-0.2.4" + sources."assert-plus-1.0.0" + sources."asynckit-0.4.0" + sources."aws-sign2-0.7.0" + sources."aws4-1.10.1" + sources."bcrypt-pbkdf-1.0.2" + sources."browser-process-hrtime-1.0.0" + sources."caseless-0.12.0" + sources."combined-stream-1.0.8" + sources."core-util-is-1.0.2" + sources."cssom-0.4.4" + (sources."cssstyle-2.3.0" // { + dependencies = [ + sources."cssom-0.3.8" + ]; + }) + sources."dashdash-1.14.1" + sources."data-urls-2.0.0" + sources."decimal.js-10.2.1" + sources."deep-is-0.1.3" + sources."delayed-stream-1.0.0" + (sources."domexception-2.0.1" // { + dependencies = [ + sources."webidl-conversions-5.0.0" + ]; + }) + sources."ecc-jsbn-0.1.2" + sources."escodegen-1.14.3" + sources."esprima-4.0.1" + sources."estraverse-4.3.0" + sources."esutils-2.0.3" + sources."extend-3.0.2" + sources."extsprintf-1.3.0" + sources."fast-deep-equal-3.1.3" + sources."fast-json-stable-stringify-2.1.0" + sources."fast-levenshtein-2.0.6" + sources."forever-agent-0.6.1" + sources."form-data-2.3.3" + sources."getpass-0.1.7" + sources."har-schema-2.0.0" + sources."har-validator-5.1.5" + sources."html-encoding-sniffer-2.0.1" + sources."http-signature-1.2.0" + sources."iconv-lite-0.4.24" + sources."ip-regex-2.1.0" + sources."is-potential-custom-element-name-1.0.0" + sources."is-typedarray-1.0.0" + sources."isstream-0.1.2" + sources."jsbn-0.1.1" + sources."jsdom-16.4.0" + sources."json-schema-0.2.3" + sources."json-schema-traverse-0.4.1" + sources."json-stringify-safe-5.0.1" + sources."jsprim-1.4.1" + sources."levn-0.3.0" + sources."lodash-4.17.20" + sources."lodash.sortby-4.7.0" + sources."mime-db-1.44.0" + sources."mime-types-2.1.27" + sources."minimist-1.2.5" + sources."nwsapi-2.2.0" + sources."oauth-sign-0.9.0" + sources."optionator-0.8.3" + sources."parse5-5.1.1" + sources."performance-now-2.1.0" + sources."prelude-ls-1.1.2" + sources."psl-1.8.0" + sources."punycode-2.1.1" + sources."qs-6.5.2" + (sources."request-2.88.2" // { + dependencies = [ + sources."tough-cookie-2.5.0" + ]; + }) + sources."request-promise-core-1.1.4" + (sources."request-promise-native-1.0.9" // { + dependencies = [ + sources."tough-cookie-2.5.0" + ]; + }) + sources."safe-buffer-5.2.1" + sources."safer-buffer-2.1.2" + sources."saxes-5.0.1" + sources."source-map-0.6.1" + sources."sshpk-1.16.1" + sources."stealthy-require-1.1.1" + sources."symbol-tree-3.2.4" + sources."tough-cookie-3.0.1" + sources."tr46-2.0.2" + sources."tunnel-agent-0.6.0" + sources."tweetnacl-0.14.5" + sources."type-check-0.3.2" + sources."uri-js-4.4.0" + sources."uuid-3.4.0" + sources."verror-1.10.0" + sources."w3c-hr-time-1.0.2" + sources."w3c-xmlserializer-2.0.0" + sources."webidl-conversions-6.1.0" + sources."whatwg-encoding-1.0.5" + sources."whatwg-mimetype-2.3.0" + sources."whatwg-url-8.4.0" + sources."word-wrap-1.2.3" + sources."ws-7.3.1" + sources."xml-name-validator-3.0.0" + sources."xmlchars-2.2.0" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "Firefox Reader Mode in your terminal - get useful text from a web page using Mozilla's Readability library"; + homepage = "https://gitlab.com/gardenappl/readability-cli#readme"; + license = "GPL-3.0-only"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; redoc-cli = nodeEnv.buildNodePackage { name = "redoc-cli"; packageName = "redoc-cli"; @@ -89182,7 +90594,7 @@ in }; dependencies = [ sources."@babel/code-frame-7.10.4" - (sources."@babel/generator-7.11.6" // { + (sources."@babel/generator-7.12.1" // { dependencies = [ sources."source-map-0.5.7" ]; @@ -89190,20 +90602,20 @@ in sources."@babel/helper-annotate-as-pure-7.10.4" sources."@babel/helper-function-name-7.10.4" sources."@babel/helper-get-function-arity-7.10.4" - sources."@babel/helper-module-imports-7.10.4" + sources."@babel/helper-module-imports-7.12.1" sources."@babel/helper-split-export-declaration-7.11.0" sources."@babel/helper-validator-identifier-7.10.4" sources."@babel/highlight-7.10.4" - sources."@babel/parser-7.11.5" - sources."@babel/runtime-7.11.2" + sources."@babel/parser-7.12.3" + sources."@babel/runtime-7.12.1" sources."@babel/template-7.10.4" - sources."@babel/traverse-7.11.5" - sources."@babel/types-7.11.5" + sources."@babel/traverse-7.12.1" + sources."@babel/types-7.12.1" sources."@emotion/is-prop-valid-0.8.8" sources."@emotion/memoize-0.7.4" sources."@emotion/stylis-0.8.5" sources."@emotion/unitless-0.7.5" - sources."@exodus/schemasafe-1.0.0-rc.2" + sources."@exodus/schemasafe-1.0.0-rc.3" sources."ajv-5.5.2" sources."ansi-regex-3.0.0" sources."ansi-styles-3.2.1" @@ -89254,7 +90666,7 @@ in sources."camelcase-5.3.1" sources."camelize-1.0.0" sources."chalk-2.4.2" - sources."chokidar-3.4.2" + sources."chokidar-3.4.3" sources."cipher-base-1.0.4" sources."classnames-2.2.6" sources."clipboard-2.0.6" @@ -89397,8 +90809,8 @@ in sources."npm-run-path-2.0.2" sources."number-is-nan-1.0.1" sources."oas-kit-common-1.0.8" - sources."oas-linter-3.2.0" - sources."oas-resolver-2.5.1" + sources."oas-linter-3.2.1" + sources."oas-resolver-2.5.2" sources."oas-schema-walker-1.1.5" sources."oas-validator-3.4.0" sources."object-assign-4.1.1" @@ -89423,7 +90835,7 @@ in sources."picomatch-2.2.2" sources."polished-3.6.7" sources."postcss-value-parser-4.1.0" - sources."prismjs-1.21.0" + sources."prismjs-1.22.0" sources."process-0.11.10" sources."process-nextick-args-2.0.1" sources."prop-types-15.7.2" @@ -89438,8 +90850,8 @@ in sources."querystring-es3-0.2.1" sources."randombytes-2.1.0" sources."randomfill-1.0.4" - sources."react-16.13.1" - sources."react-dom-16.13.1" + sources."react-16.14.0" + sources."react-dom-16.14.0" sources."react-dropdown-1.9.0" (sources."react-hot-loader-4.13.0" // { dependencies = [ @@ -89457,10 +90869,10 @@ in sources."string_decoder-1.1.1" ]; }) - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" (sources."redoc-2.0.0-rc.8-1" // { dependencies = [ - sources."tslib-1.14.0" + sources."tslib-1.14.1" ]; }) sources."reftools-1.1.6" @@ -89512,9 +90924,9 @@ in sources."to-arraybuffer-1.0.1" sources."to-fast-properties-2.0.0" sources."to-regex-range-5.0.1" - sources."tslib-2.0.2" + sources."tslib-2.0.3" sources."tty-browserify-0.0.0" - sources."uglify-js-3.11.1" + sources."uglify-js-3.11.3" (sources."url-0.11.0" // { dependencies = [ sources."punycode-1.3.2" @@ -89576,10 +90988,10 @@ in "reveal.js" = nodeEnv.buildNodePackage { name = "reveal.js"; packageName = "reveal.js"; - version = "4.0.2"; + version = "4.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/reveal.js/-/reveal.js-4.0.2.tgz"; - sha512 = "LWZSUenufF1gpD7npxJ7KfoQQFKgc1D6XrLTFgKlwWNP1BQ74hT48KONFWMAw+8R/QUeaScCLCLrBVHDfFIEiw=="; + url = "https://registry.npmjs.org/reveal.js/-/reveal.js-4.1.0.tgz"; + sha512 = "lYOMhxSWgq5jtgspF7eRL0d2rBnHO/VGZ4/qp46yu+eGoWqJkYHEuepEXzx71M8MI6Rf8HBYWaTnKi5uHWcU1Q=="; }; buildInputs = globalBuildInputs; meta = { @@ -89594,10 +91006,10 @@ in rollup = nodeEnv.buildNodePackage { name = "rollup"; packageName = "rollup"; - version = "2.28.2"; + version = "2.32.0"; src = fetchurl { - url = "https://registry.npmjs.org/rollup/-/rollup-2.28.2.tgz"; - sha512 = "8txbsFBFLmm9Xdt4ByTOGa9Muonmc8MfNjnGAR8U8scJlF1ZW7AgNZa7aqBXaKtlvnYP/ab++fQIq9dB9NWUbg=="; + url = "https://registry.npmjs.org/rollup/-/rollup-2.32.0.tgz"; + sha512 = "0FIG1jY88uhCP2yP4CfvtKEqPDRmsUwfY1kEOOM+DH/KOGATgaIFd/is1+fQOxsvh62ELzcFfKonwKWnHhrqmw=="; }; dependencies = [ sources."fsevents-2.1.3" @@ -89638,7 +91050,7 @@ in sources."@types/node-12.7.12" sources."@types/node-fetch-2.5.7" sources."@types/resolve-1.17.1" - sources."@types/vscode-1.49.0" + sources."@types/vscode-1.50.0" (sources."@typescript-eslint/eslint-plugin-3.10.1" // { dependencies = [ sources."semver-7.3.2" @@ -89653,16 +91065,16 @@ in ]; }) sources."@typescript-eslint/visitor-keys-3.10.1" + sources."@ungap/promise-all-settled-1.1.2" sources."acorn-7.4.1" sources."acorn-jsx-5.3.1" sources."agent-base-4.3.0" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-colors-4.1.1" sources."ansi-regex-5.0.0" sources."ansi-styles-3.2.1" sources."anymatch-3.1.1" sources."argparse-1.0.10" - sources."array.prototype.map-1.0.2" sources."astral-regex-1.0.0" sources."asynckit-0.4.0" sources."azure-devops-node-api-7.2.0" @@ -89686,7 +91098,7 @@ in ]; }) sources."cheerio-1.0.0-rc.3" - sources."chokidar-3.4.2" + sources."chokidar-3.4.3" (sources."cliui-5.0.0" // { dependencies = [ sources."ansi-regex-4.1.0" @@ -89708,7 +91120,6 @@ in sources."deep-freeze-0.0.1" sources."deep-is-0.1.3" sources."deepmerge-4.2.2" - sources."define-properties-1.1.3" sources."delayed-stream-1.0.0" sources."denodeify-1.2.1" sources."diff-4.0.2" @@ -89725,20 +91136,12 @@ in sources."emoji-regex-7.0.3" sources."enquirer-2.3.6" sources."entities-1.1.2" - (sources."es-abstract-1.17.7" // { - dependencies = [ - sources."es-abstract-1.18.0-next.1" - sources."object.assign-4.1.1" - ]; - }) - sources."es-array-method-boxes-properly-1.0.0" - sources."es-get-iterator-1.1.0" - sources."es-to-primitive-1.2.1" sources."es6-promise-4.2.8" sources."es6-promisify-5.0.0" sources."escape-string-regexp-1.0.5" - (sources."eslint-7.10.0" // { + (sources."eslint-7.11.0" // { dependencies = [ + sources."eslint-visitor-keys-2.0.0" sources."semver-7.3.2" ]; }) @@ -89767,22 +91170,19 @@ in sources."file-entry-cache-5.0.1" sources."fill-range-7.0.1" sources."find-up-5.0.0" - sources."flat-4.1.0" + sources."flat-5.0.2" sources."flat-cache-2.0.1" sources."flatted-2.0.2" sources."form-data-3.0.0" sources."fs.realpath-1.0.0" sources."fsevents-2.1.3" - sources."function-bind-1.1.1" sources."functional-red-black-tree-1.0.1" sources."get-caller-file-2.0.5" sources."glob-7.1.6" sources."glob-parent-5.1.1" sources."globals-12.4.0" sources."growl-1.10.5" - sources."has-1.0.3" sources."has-flag-3.0.0" - sources."has-symbols-1.0.1" sources."he-1.2.0" sources."htmlparser2-3.10.1" (sources."http-proxy-agent-2.1.0" // { @@ -89801,28 +91201,15 @@ in sources."imurmurhash-0.1.4" sources."inflight-1.0.6" sources."inherits-2.0.4" - sources."is-arguments-1.0.4" sources."is-binary-path-2.1.0" - sources."is-buffer-2.0.4" - sources."is-callable-1.2.2" - sources."is-date-object-1.0.2" sources."is-extglob-2.1.1" sources."is-fullwidth-code-point-2.0.0" sources."is-glob-4.0.1" - sources."is-map-2.0.1" sources."is-module-1.0.0" - sources."is-negative-zero-2.0.0" sources."is-number-7.0.0" - sources."is-plain-obj-1.1.0" + sources."is-plain-obj-2.1.0" sources."is-reference-1.2.1" - sources."is-regex-1.1.1" - sources."is-set-2.0.1" - sources."is-string-1.0.5" - sources."is-symbol-1.0.3" - sources."isarray-2.0.5" sources."isexe-2.0.0" - sources."iterate-iterator-1.0.1" - sources."iterate-value-1.0.2" sources."js-tokens-4.0.0" sources."js-yaml-3.14.0" sources."json-schema-traverse-0.4.1" @@ -89847,24 +91234,21 @@ in sources."minimatch-3.0.4" sources."minimist-1.2.5" sources."mkdirp-0.5.5" - (sources."mocha-8.1.3" // { + (sources."mocha-8.2.0" // { dependencies = [ - sources."debug-4.1.1" + sources."debug-4.2.0" sources."escape-string-regexp-4.0.0" sources."has-flag-4.0.0" - sources."strip-json-comments-3.0.1" - sources."supports-color-7.1.0" + sources."supports-color-7.2.0" ]; }) sources."ms-2.1.2" sources."mute-stream-0.0.8" + sources."nanoid-3.1.12" sources."natural-compare-1.4.0" sources."node-fetch-2.6.1" sources."normalize-path-3.0.0" sources."nth-check-1.0.2" - sources."object-inspect-1.8.0" - sources."object-keys-1.1.1" - sources."object.assign-4.1.0" sources."once-1.4.0" sources."optionator-0.9.1" sources."os-0.1.1" @@ -89889,23 +91273,22 @@ in sources."picomatch-2.2.2" sources."prelude-ls-1.2.1" sources."progress-2.0.3" - sources."promise.allsettled-1.0.2" sources."pseudomap-1.0.2" sources."punycode-2.1.1" sources."randombytes-2.1.0" sources."read-1.0.7" sources."readable-stream-3.6.0" - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."regexpp-3.1.0" sources."require-directory-2.1.1" sources."require-main-filename-2.0.0" sources."resolve-1.17.0" sources."resolve-from-4.0.0" sources."rimraf-2.6.3" - sources."rollup-2.28.2" + sources."rollup-2.32.0" sources."safe-buffer-5.2.1" sources."semver-6.3.0" - sources."serialize-javascript-4.0.0" + sources."serialize-javascript-5.0.1" sources."set-blocking-2.0.0" sources."shebang-command-2.0.0" sources."shebang-regex-3.0.0" @@ -89919,8 +91302,6 @@ in sources."strip-ansi-5.2.0" ]; }) - sources."string.prototype.trimend-1.0.1" - sources."string.prototype.trimstart-1.0.1" sources."string_decoder-1.3.0" sources."strip-ansi-6.0.0" sources."strip-json-comments-3.1.1" @@ -89929,10 +91310,10 @@ in sources."text-table-0.2.0" sources."tmp-0.0.29" sources."to-regex-range-5.0.1" - sources."tslib-2.0.2" + sources."tslib-2.0.3" (sources."tsutils-3.17.1" // { dependencies = [ - sources."tslib-1.14.0" + sources."tslib-1.14.1" ]; }) sources."tunnel-0.0.4" @@ -89969,7 +91350,7 @@ in ]; }) sources."word-wrap-1.2.3" - sources."workerpool-6.0.0" + sources."workerpool-6.0.2" (sources."wrap-ansi-5.1.0" // { dependencies = [ sources."ansi-regex-4.1.0" @@ -89990,15 +91371,10 @@ in ]; }) sources."yargs-parser-13.1.2" - (sources."yargs-unparser-1.6.1" // { + (sources."yargs-unparser-2.0.0" // { dependencies = [ - sources."find-up-3.0.0" - sources."locate-path-3.0.0" - sources."p-limit-2.3.0" - sources."p-locate-3.0.0" - sources."path-exists-3.0.0" - sources."yargs-14.2.3" - sources."yargs-parser-15.0.1" + sources."camelcase-6.1.0" + sources."decamelize-4.0.0" ]; }) sources."yauzl-2.10.0" @@ -90020,7 +91396,7 @@ in sha1 = "c8fa1fffb8258ce68adf75df73f90fbb6f23d198"; }; dependencies = [ - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."asn1-0.2.4" sources."assert-plus-1.0.0" sources."asynckit-0.4.0" @@ -90143,6 +91519,41 @@ in bypassCache = true; reconstructLock = true; }; + sass = nodeEnv.buildNodePackage { + name = "sass"; + packageName = "sass"; + version = "1.27.0"; + src = fetchurl { + url = "https://registry.npmjs.org/sass/-/sass-1.27.0.tgz"; + sha512 = "0gcrER56OkzotK/GGwgg4fPrKuiFlPNitO7eUJ18Bs+/NBlofJfMxmxqpqJxjae9vu0Wq8TZzrSyxZal00WDig=="; + }; + dependencies = [ + sources."anymatch-3.1.1" + sources."binary-extensions-2.1.0" + sources."braces-3.0.2" + sources."chokidar-3.4.3" + sources."fill-range-7.0.1" + sources."fsevents-2.1.3" + sources."glob-parent-5.1.1" + sources."is-binary-path-2.1.0" + sources."is-extglob-2.1.1" + sources."is-glob-4.0.1" + sources."is-number-7.0.0" + sources."normalize-path-3.0.0" + sources."picomatch-2.2.2" + sources."readdirp-3.5.0" + sources."to-regex-range-5.0.1" + ]; + buildInputs = globalBuildInputs; + meta = { + description = "A pure JavaScript implementation of Sass."; + homepage = https://github.com/sass/dart-sass; + license = "MIT"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; semver = nodeEnv.buildNodePackage { name = "semver"; packageName = "semver"; @@ -90270,10 +91681,10 @@ in serverless = nodeEnv.buildNodePackage { name = "serverless"; packageName = "serverless"; - version = "2.5.0"; + version = "2.8.0"; src = fetchurl { - url = "https://registry.npmjs.org/serverless/-/serverless-2.5.0.tgz"; - sha512 = "2JxwILnVqCY9mSw+QcPSKh2OJXsCmL5BZ9xHXYAOaKbI8G/TlxwooeCmw9LT91kdtM8Wh69rJsxRzzpP4MhWyQ=="; + url = "https://registry.npmjs.org/serverless/-/serverless-2.8.0.tgz"; + sha512 = "5yG+t5SHX4vxMmllLEj6DPkP0QTuMwmYfQw7mqq8H2WPr6MOUTuksskgNhljpgEASLAeZa5HdaRQq+s+/pq17w=="; }; dependencies = [ sources."2-thenable-1.0.0" @@ -90305,7 +91716,7 @@ in ]; }) sources."@serverless/component-metrics-1.0.8" - (sources."@serverless/components-3.2.1" // { + (sources."@serverless/components-3.2.4" // { dependencies = [ sources."@sindresorhus/is-3.1.2" sources."@szmarczak/http-timer-4.0.5" @@ -90331,10 +91742,10 @@ in sources."semver-6.3.0" ]; }) - sources."@serverless/enterprise-plugin-4.0.4" + sources."@serverless/enterprise-plugin-4.1.1" sources."@serverless/event-mocks-1.1.1" - sources."@serverless/platform-client-2.1.0" - sources."@serverless/platform-client-china-2.0.0" + sources."@serverless/platform-client-3.1.2" + sources."@serverless/platform-client-china-2.0.4" (sources."@serverless/platform-sdk-2.3.2" // { dependencies = [ sources."chalk-2.4.2" @@ -90353,17 +91764,17 @@ in sources."write-file-atomic-3.0.3" ]; }) - sources."@serverless/utils-china-1.0.2" + sources."@serverless/utils-china-1.0.7" sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" - sources."@tencent-sdk/capi-1.1.4" + sources."@tencent-sdk/capi-1.1.5" sources."@types/cacheable-request-6.0.1" sources."@types/caseless-0.12.2" sources."@types/http-cache-semantics-4.0.0" sources."@types/keyv-3.1.1" - sources."@types/lodash-4.14.161" + sources."@types/lodash-4.14.162" sources."@types/long-4.0.1" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."@types/request-2.48.5" sources."@types/request-promise-native-1.0.17" sources."@types/responselike-1.0.0" @@ -90371,7 +91782,7 @@ in sources."adm-zip-0.4.16" sources."after-0.8.2" sources."agent-base-5.1.1" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ajv-keywords-3.5.2" (sources."ansi-align-3.0.0" // { dependencies = [ @@ -90384,6 +91795,7 @@ in sources."ansi-regex-4.1.0" sources."ansi-styles-3.2.1" sources."anymatch-3.1.1" + sources."aproba-1.2.0" (sources."archive-type-4.0.0" // { dependencies = [ sources."file-type-4.4.0" @@ -90392,11 +91804,19 @@ in (sources."archiver-5.0.2" // { dependencies = [ sources."async-3.2.0" + sources."bl-4.0.3" + sources."tar-stream-2.1.4" ]; }) (sources."archiver-utils-2.1.0" // { dependencies = [ - sources."isarray-1.0.0" + sources."readable-stream-2.3.7" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) + (sources."are-we-there-yet-1.1.5" // { + dependencies = [ sources."readable-stream-2.3.7" sources."safe-buffer-5.1.2" sources."string_decoder-1.1.1" @@ -90411,10 +91831,9 @@ in sources."async-limiter-1.0.1" sources."asynckit-0.4.0" sources."at-least-node-1.0.0" - (sources."aws-sdk-2.769.0" // { + (sources."aws-sdk-2.773.0" // { dependencies = [ sources."buffer-4.9.2" - sources."isarray-1.0.0" sources."uuid-3.3.2" ]; }) @@ -90426,17 +91845,36 @@ in sources."base64-arraybuffer-0.1.4" sources."base64-js-1.3.1" sources."bcrypt-pbkdf-1.0.2" + sources."binary-0.3.0" sources."binary-extensions-2.1.0" - sources."bl-4.0.3" + sources."bindings-1.5.0" + (sources."bl-2.2.1" // { + dependencies = [ + (sources."readable-stream-2.3.7" // { + dependencies = [ + sources."safe-buffer-5.1.2" + ]; + }) + (sources."string_decoder-1.1.1" // { + dependencies = [ + sources."safe-buffer-5.1.2" + ]; + }) + ]; + }) sources."blob-0.0.5" sources."bluebird-3.7.2" (sources."boxen-4.2.0" // { dependencies = [ + sources."ansi-regex-5.0.0" sources."ansi-styles-4.3.0" sources."chalk-3.0.0" sources."color-convert-2.0.1" sources."color-name-1.1.4" sources."has-flag-4.0.0" + sources."is-fullwidth-code-point-3.0.0" + sources."string-width-4.2.0" + sources."strip-ansi-6.0.0" sources."supports-color-7.2.0" sources."type-fest-0.8.1" ]; @@ -90449,6 +91887,8 @@ in sources."buffer-crc32-0.2.13" sources."buffer-fill-1.0.0" sources."buffer-from-1.1.1" + sources."buffermaker-1.2.1" + sources."buffers-0.1.1" sources."builtin-modules-3.1.0" sources."cacheable-lookup-5.0.3" (sources."cacheable-request-6.1.0" // { @@ -90460,6 +91900,11 @@ in sources."cachedir-2.3.0" sources."camelcase-5.3.1" sources."caseless-0.12.0" + (sources."chainsaw-0.1.0" // { + dependencies = [ + sources."traverse-0.3.9" + ]; + }) (sources."chalk-4.1.0" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -90471,7 +91916,8 @@ in }) sources."chardet-0.7.0" sources."child-process-ext-2.1.1" - sources."chokidar-3.4.2" + sources."chokidar-3.4.3" + sources."chownr-1.1.4" sources."cli-boxes-2.2.1" (sources."cli-color-2.0.0" // { dependencies = [ @@ -90481,10 +91927,11 @@ in sources."cli-cursor-3.1.0" sources."cli-width-3.0.0" sources."clone-response-1.0.2" + sources."code-point-at-1.1.0" sources."color-3.0.0" sources."color-convert-1.9.3" sources."color-name-1.1.3" - sources."color-string-1.5.3" + sources."color-string-1.5.4" sources."colornames-1.1.1" sources."colors-1.3.3" sources."colorspace-1.1.2" @@ -90495,6 +91942,7 @@ in sources."component-inherit-0.0.3" sources."compress-commons-4.0.1" sources."concat-map-0.0.1" + sources."console-control-strings-1.1.0" (sources."content-disposition-0.5.3" // { dependencies = [ sources."safe-buffer-5.1.2" @@ -90515,21 +91963,12 @@ in ]; }) sources."dashdash-1.14.1" - sources."dayjs-1.9.1" + sources."dayjs-1.9.3" sources."debug-3.1.0" sources."decode-uri-component-0.2.0" sources."decompress-4.2.1" sources."decompress-response-3.3.0" - (sources."decompress-tar-4.1.1" // { - dependencies = [ - sources."bl-1.2.3" - sources."isarray-1.0.0" - sources."readable-stream-2.3.7" - sources."safe-buffer-5.1.2" - sources."string_decoder-1.1.1" - sources."tar-stream-1.6.2" - ]; - }) + sources."decompress-tar-4.1.1" (sources."decompress-tarbz2-4.1.1" // { dependencies = [ sources."file-type-6.2.0" @@ -90546,6 +91985,9 @@ in sources."defer-to-connect-1.1.3" sources."deferred-0.7.11" sources."delayed-stream-1.0.0" + sources."delegates-1.0.0" + sources."denque-1.4.1" + sources."detect-libc-1.0.3" sources."diagnostics-1.1.1" sources."dijkstrajs-1.0.1" sources."dir-glob-3.0.1" @@ -90607,6 +92049,7 @@ in sources."essentials-1.1.1" sources."event-emitter-0.3.5" sources."events-1.1.1" + sources."expand-template-2.0.3" sources."ext-1.4.0" sources."ext-list-2.2.2" sources."ext-name-5.0.0" @@ -90623,6 +92066,7 @@ in sources."fecha-4.2.0" sources."figures-3.2.0" sources."file-type-5.2.0" + sources."file-uri-to-path-1.0.0" sources."filename-reserved-regex-2.0.0" sources."filenamify-3.0.0" sources."filesize-6.1.0" @@ -90641,7 +92085,6 @@ in sources."formidable-1.2.2" (sources."from2-2.3.0" // { dependencies = [ - sources."isarray-1.0.0" sources."readable-stream-2.3.7" sources."safe-buffer-5.1.2" sources."string_decoder-1.1.1" @@ -90657,9 +92100,16 @@ in sources."fs.realpath-1.0.0" sources."fs2-0.3.8" sources."fsevents-2.1.3" + (sources."gauge-2.7.4" // { + dependencies = [ + sources."ansi-regex-2.1.1" + sources."strip-ansi-3.0.1" + ]; + }) sources."get-stdin-8.0.0" sources."get-stream-4.1.0" sources."getpass-0.1.7" + sources."github-from-package-0.0.0" sources."glob-7.1.6" sources."glob-parent-5.1.1" sources."globby-11.0.1" @@ -90668,11 +92118,16 @@ in sources."graphlib-2.1.8" sources."har-schema-2.0.0" sources."har-validator-5.1.5" - sources."has-binary2-1.0.3" + (sources."has-binary2-1.0.3" // { + dependencies = [ + sources."isarray-2.0.1" + ]; + }) sources."has-cors-1.1.0" sources."has-flag-3.0.0" sources."has-symbol-support-x-1.4.2" sources."has-to-string-tag-x-1.4.1" + sources."has-unicode-2.0.1" sources."http-cache-semantics-4.1.0" sources."http-signature-1.2.0" sources."http2-wrapper-1.0.0-beta.5.2" @@ -90695,6 +92150,8 @@ in (sources."inquirer-7.3.3" // { dependencies = [ sources."ansi-regex-5.0.0" + sources."is-fullwidth-code-point-3.0.0" + sources."string-width-4.2.0" sources."strip-ansi-6.0.0" ]; }) @@ -90704,7 +92161,7 @@ in sources."is-binary-path-2.1.0" sources."is-docker-2.1.1" sources."is-extglob-2.1.1" - sources."is-fullwidth-code-point-3.0.0" + sources."is-fullwidth-code-point-1.0.0" sources."is-glob-4.0.1" sources."is-natural-number-4.0.1" sources."is-number-7.0.0" @@ -90715,7 +92172,7 @@ in sources."is-stream-1.1.0" sources."is-typedarray-1.0.0" sources."is-wsl-2.2.0" - sources."isarray-2.0.1" + sources."isarray-1.0.0" sources."isexe-2.0.0" sources."isomorphic-ws-4.0.1" sources."isstream-0.1.2" @@ -90737,18 +92194,22 @@ in sources."jsprim-1.4.1" (sources."jszip-3.5.0" // { dependencies = [ - sources."isarray-1.0.0" sources."readable-stream-2.3.7" sources."safe-buffer-5.1.2" sources."string_decoder-1.1.1" ]; }) sources."jwt-decode-2.2.0" + (sources."kafka-node-5.0.0" // { + dependencies = [ + sources."debug-2.6.9" + sources."uuid-3.4.0" + ]; + }) sources."keyv-3.1.0" sources."kuler-1.0.1" (sources."lazystream-1.0.0" // { dependencies = [ - sources."isarray-1.0.0" sources."readable-stream-2.3.7" sources."safe-buffer-5.1.2" sources."string_decoder-1.1.1" @@ -90771,7 +92232,7 @@ in sources."ms-2.1.2" ]; }) - sources."long-4.0.0" + sources."long-1.1.2" sources."lowercase-keys-1.0.1" sources."lru-queue-0.1.0" (sources."make-dir-1.3.0" // { @@ -90794,15 +92255,26 @@ in sources."moment-2.29.1" sources."ms-2.0.0" sources."mute-stream-0.0.8" + sources."nan-2.14.2" sources."nanoid-2.1.11" + sources."napi-build-utils-1.0.2" sources."native-promise-only-0.8.1" sources."ncjsm-4.1.0" + sources."nested-error-stacks-2.1.0" sources."next-tick-1.0.0" sources."nice-try-1.0.5" + (sources."node-abi-2.19.1" // { + dependencies = [ + sources."semver-5.7.1" + ]; + }) sources."node-dir-0.1.17" sources."node-fetch-2.6.1" + sources."noop-logger-0.1.1" sources."normalize-path-3.0.0" sources."normalize-url-4.5.0" + sources."npmlog-4.1.2" + sources."number-is-nan-1.0.1" sources."oauth-sign-0.9.0" sources."object-assign-4.1.1" sources."object-hash-2.0.3" @@ -90815,6 +92287,8 @@ in sources."is-wsl-1.1.0" ]; }) + sources."optional-0.1.4" + sources."os-homedir-1.0.2" sources."os-tmpdir-1.0.2" sources."p-cancelable-1.1.0" sources."p-event-2.3.1" @@ -90841,13 +92315,19 @@ in sources."pify-2.3.0" sources."pinkie-2.0.4" sources."pinkie-promise-2.0.1" + (sources."prebuild-install-5.3.0" // { + dependencies = [ + sources."pump-2.0.1" + ]; + }) sources."prepend-http-2.0.0" sources."prettyoutput-1.2.0" sources."process-nextick-args-2.0.1" sources."promise-queue-2.2.5" (sources."protobufjs-6.10.1" // { dependencies = [ - sources."@types/node-13.13.23" + sources."@types/node-13.13.26" + sources."long-4.0.0" ]; }) sources."psl-1.8.0" @@ -90861,7 +92341,7 @@ in sources."rc-1.2.8" sources."readable-stream-3.6.0" sources."readdir-glob-1.1.1" - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."regenerator-runtime-0.13.7" sources."registry-auth-token-4.2.0" sources."registry-url-5.1.0" @@ -90877,6 +92357,7 @@ in sources."resolve-alpn-1.0.0" sources."responselike-1.0.2" sources."restore-cursor-3.1.0" + sources."retry-0.10.1" sources."reusify-1.0.4" sources."run-async-2.4.1" sources."run-parallel-1.1.9" @@ -90886,11 +92367,14 @@ in sources."sax-1.2.1" sources."seek-bzip-1.0.6" sources."semver-7.3.2" + sources."set-blocking-2.0.0" sources."set-immediate-shim-1.0.1" sources."shebang-command-1.2.0" sources."shebang-regex-1.0.0" sources."shortid-2.2.15" sources."signal-exit-3.0.3" + sources."simple-concat-1.0.1" + sources."simple-get-2.8.1" (sources."simple-git-2.21.0" // { dependencies = [ sources."debug-4.3.0" @@ -90899,8 +92383,13 @@ in }) sources."simple-swizzle-0.2.2" sources."slash-3.0.0" + sources."snappy-6.3.5" sources."socket.io-client-2.3.1" - sources."socket.io-parser-3.3.1" + (sources."socket.io-parser-3.3.1" // { + dependencies = [ + sources."isarray-2.0.1" + ]; + }) sources."sort-keys-1.1.2" sources."sort-keys-length-1.0.1" sources."source-map-0.6.1" @@ -90914,10 +92403,10 @@ in sources."stream-promise-3.2.0" sources."stream-shift-1.0.1" sources."strict-uri-encode-1.1.0" - (sources."string-width-4.2.0" // { + (sources."string-width-1.0.2" // { dependencies = [ - sources."ansi-regex-5.0.0" - sources."strip-ansi-6.0.0" + sources."ansi-regex-2.1.1" + sources."strip-ansi-3.0.1" ]; }) sources."string_decoder-1.3.0" @@ -90927,7 +92416,6 @@ in sources."strip-outer-1.0.1" (sources."superagent-3.8.3" // { dependencies = [ - sources."isarray-1.0.0" sources."readable-stream-2.3.7" sources."safe-buffer-5.1.2" sources."string_decoder-1.1.1" @@ -90955,7 +92443,19 @@ in sources."untildify-3.0.3" ]; }) - sources."tar-stream-2.1.4" + (sources."tar-fs-1.16.3" // { + dependencies = [ + sources."pump-1.0.3" + ]; + }) + (sources."tar-stream-1.6.2" // { + dependencies = [ + sources."bl-1.2.3" + sources."readable-stream-2.3.7" + sources."safe-buffer-5.1.2" + sources."string_decoder-1.1.1" + ]; + }) sources."term-size-2.2.0" sources."text-hex-1.0.0" sources."through-2.3.8" @@ -90970,7 +92470,7 @@ in sources."traverse-0.6.6" sources."trim-repeated-1.0.0" sources."triple-beam-1.3.0" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" sources."type-2.1.0" @@ -90992,11 +92492,19 @@ in sources."uuid-8.3.1" sources."verror-1.10.0" sources."which-1.3.1" - sources."widest-line-3.1.0" + sources."which-pm-runs-1.0.0" + sources."wide-align-1.1.3" + (sources."widest-line-3.1.0" // { + dependencies = [ + sources."ansi-regex-5.0.0" + sources."is-fullwidth-code-point-3.0.0" + sources."string-width-4.2.0" + sources."strip-ansi-6.0.0" + ]; + }) sources."winston-3.2.1" (sources."winston-transport-4.4.0" // { dependencies = [ - sources."isarray-1.0.0" sources."readable-stream-2.3.7" sources."safe-buffer-5.1.2" sources."string_decoder-1.1.1" @@ -91011,7 +92519,7 @@ in sources."xtend-4.0.2" sources."yaml-ast-parser-0.0.43" sources."yamljs-0.3.0" - sources."yargs-parser-20.2.1" + sources."yargs-parser-20.2.3" sources."yauzl-2.10.0" sources."yeast-0.1.2" sources."zip-stream-4.0.2" @@ -91039,7 +92547,7 @@ in sources."CSSwhat-0.4.7" sources."accepts-1.3.7" sources."after-0.8.1" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."array-flatten-1.1.1" sources."arraybuffer.slice-0.0.6" sources."asn1-0.2.4" @@ -91556,7 +93064,7 @@ in sources."minimist-1.2.5" sources."mkdirp-0.5.5" sources."mv-2.1.1" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."ncp-2.0.0" sources."negotiator-0.5.3" sources."node-uuid-1.4.8" @@ -91653,10 +93161,10 @@ in snyk = nodeEnv.buildNodePackage { name = "snyk"; packageName = "snyk"; - version = "1.410.3"; + version = "1.415.0"; src = fetchurl { - url = "https://registry.npmjs.org/snyk/-/snyk-1.410.3.tgz"; - sha512 = "BZ2w1uPCDyjgM2Y6XW071ZlVa1RAVU0xEe7oFY93cdf6ccjCZLyfDqsnbf0ahxAZJp8BZOrq/HsFAfEhm3P8hg=="; + url = "https://registry.npmjs.org/snyk/-/snyk-1.415.0.tgz"; + sha512 = "zpqUIizBSYTaZA1DvPf2xIOQSmutVDNxOkSM4CQkqk9xHf2W6ltq8NcxErVXUGYmsUmGfrNe0LIBaKP9lzyMbQ=="; }; dependencies = [ sources."@sindresorhus/is-2.1.1" @@ -91664,13 +93172,13 @@ in sources."@snyk/cocoapods-lockfile-parser-3.5.2" sources."@snyk/composer-lockfile-parser-1.4.1" sources."@snyk/dep-graph-1.19.4" - sources."@snyk/docker-registry-v2-client-1.13.5" + sources."@snyk/docker-registry-v2-client-1.13.6" sources."@snyk/gemfile-1.2.0" sources."@snyk/java-call-graph-builder-1.16.0" - sources."@snyk/rpm-parser-2.0.0" + sources."@snyk/rpm-parser-2.2.0" (sources."@snyk/snyk-cocoapods-plugin-2.5.1" // { dependencies = [ - sources."tslib-2.0.2" + sources."tslib-2.0.3" ]; }) (sources."@snyk/snyk-docker-pull-3.2.0" // { @@ -91686,7 +93194,7 @@ in sources."@types/http-cache-semantics-4.0.0" sources."@types/js-yaml-3.12.5" sources."@types/keyv-3.1.1" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."@types/responselike-1.0.0" sources."@types/semver-5.5.0" sources."@yarnpkg/lockfile-1.1.0" @@ -91709,7 +93217,7 @@ in sources."asn1-0.2.4" (sources."ast-types-0.14.2" // { dependencies = [ - sources."tslib-2.0.2" + sources."tslib-2.0.3" ]; }) sources."async-1.5.2" @@ -91848,7 +93356,7 @@ in sources."gunzip-maybe-1.4.2" sources."has-flag-3.0.0" sources."has-yarn-2.1.0" - (sources."hosted-git-info-3.0.5" // { + (sources."hosted-git-info-3.0.7" // { dependencies = [ sources."lru-cache-6.0.0" sources."yallist-4.0.0" @@ -92046,13 +93554,13 @@ in sources."color-name-1.1.4" sources."has-flag-4.0.0" sources."supports-color-7.2.0" - sources."tslib-2.0.2" + sources."tslib-2.0.3" ]; }) - (sources."snyk-docker-plugin-3.26.2" // { + (sources."snyk-docker-plugin-4.1.1" // { dependencies = [ sources."rimraf-3.0.2" - sources."snyk-nodejs-lockfile-parser-1.29.0" + sources."snyk-nodejs-lockfile-parser-1.30.0" sources."tmp-0.2.1" sources."uuid-8.3.1" ]; @@ -92064,11 +93572,11 @@ in sources."tmp-0.2.1" ]; }) - (sources."snyk-gradle-plugin-3.9.0" // { + (sources."snyk-gradle-plugin-3.10.0" // { dependencies = [ (sources."@snyk/cli-interface-2.9.1" // { dependencies = [ - sources."tslib-1.14.0" + sources."tslib-1.14.1" ]; }) sources."ansi-styles-4.3.0" @@ -92079,13 +93587,14 @@ in sources."rimraf-3.0.2" sources."supports-color-7.2.0" sources."tmp-0.2.1" - sources."tslib-2.0.2" + sources."tslib-2.0.3" ]; }) sources."snyk-module-3.1.0" - (sources."snyk-mvn-plugin-2.22.0" // { + (sources."snyk-mvn-plugin-2.23.0" // { dependencies = [ sources."@snyk/cli-interface-2.9.1" + sources."@snyk/java-call-graph-builder-1.16.1" sources."tmp-0.1.0" sources."tslib-1.11.1" ]; @@ -92105,7 +93614,7 @@ in }) (sources."snyk-policy-1.14.1" // { dependencies = [ - sources."@types/node-6.14.12" + sources."@types/node-6.14.13" sources."hosted-git-info-2.8.8" (sources."snyk-module-2.1.0" // { dependencies = [ @@ -92122,7 +93631,7 @@ in }) (sources."snyk-resolve-deps-4.4.0" // { dependencies = [ - sources."@types/node-6.14.12" + sources."@types/node-6.14.13" sources."debug-3.2.6" sources."hosted-git-info-2.8.8" sources."lru-cache-4.1.5" @@ -92196,7 +93705,7 @@ in sources."toidentifier-1.0.0" sources."toml-3.0.0" sources."tree-kill-1.2.2" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tweetnacl-0.14.5" sources."type-check-0.3.2" sources."type-fest-0.11.0" @@ -92358,7 +93867,7 @@ in sources."ci-info-1.6.0" sources."cli-boxes-1.0.0" sources."cli-cursor-2.1.0" - sources."cli-spinners-2.4.0" + sources."cli-spinners-2.5.0" sources."clone-1.0.4" sources."color-convert-1.9.3" sources."color-name-1.1.3" @@ -92819,7 +94328,7 @@ in ]; }) sources."is-typedarray-1.0.0" - sources."is-valid-domain-0.0.15" + sources."is-valid-domain-0.0.16" sources."is-weakmap-2.0.1" sources."is-weakset-2.0.1" sources."is-windows-1.0.2" @@ -92886,7 +94395,7 @@ in sources."multiserver-address-1.0.1" sources."multiserver-scopes-1.0.0" sources."mutexify-1.3.1" - sources."muxrpc-6.5.0" + sources."muxrpc-6.5.1" sources."muxrpc-usage-2.1.0" sources."muxrpc-validation-3.0.2" sources."muxrpcli-3.1.2" @@ -92895,7 +94404,7 @@ in sources."rimraf-2.4.5" ]; }) - sources."nan-2.14.1" + sources."nan-2.14.2" (sources."nanomatch-1.2.13" // { dependencies = [ sources."arr-diff-4.0.0" @@ -93207,7 +94716,7 @@ in ]; }) sources."ssb-keys-7.2.2" - sources."ssb-links-3.0.9" + sources."ssb-links-3.0.10" sources."ssb-local-1.0.0" sources."ssb-logging-1.0.0" sources."ssb-master-1.0.3" @@ -93421,7 +94930,7 @@ in sources."semver-5.0.3" ]; }) - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."align-text-0.1.4" sources."ansi-regex-2.1.1" sources."ansi-styles-2.2.1" @@ -93438,7 +94947,7 @@ in sources."async-1.5.2" sources."async-limiter-1.0.1" sources."asynckit-0.4.0" - (sources."aws-sdk-2.769.0" // { + (sources."aws-sdk-2.773.0" // { dependencies = [ sources."uuid-3.3.2" ]; @@ -93565,7 +95074,7 @@ in sources."drange-1.1.1" (sources."dtrace-provider-0.8.8" // { dependencies = [ - sources."nan-2.14.1" + sources."nan-2.14.2" ]; }) sources."ecc-jsbn-0.1.2" @@ -94229,7 +95738,7 @@ in sources."css-select-2.1.0" sources."css-select-base-adapter-0.1.1" sources."css-tree-1.0.0-alpha.37" - sources."css-what-3.4.1" + sources."css-what-3.4.2" (sources."csso-4.0.3" // { dependencies = [ sources."css-tree-1.0.0-alpha.39" @@ -94244,7 +95753,7 @@ in }) sources."domelementtype-1.3.1" sources."domutils-1.7.0" - sources."entities-2.0.3" + sources."entities-2.1.0" sources."es-abstract-1.17.7" sources."es-to-primitive-1.2.1" sources."escape-string-regexp-1.0.5" @@ -94642,7 +96151,7 @@ in sources."ms-2.0.0" sources."multer-1.4.2" sources."mute-stream-0.0.5" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."nanomatch-1.2.13" sources."native-promise-only-0.8.1" sources."neo-async-2.6.2" @@ -94865,7 +96374,7 @@ in sources."truncate-utf8-bytes-1.0.2" sources."type-is-1.6.18" sources."typedarray-0.0.6" - sources."uglify-js-3.11.1" + sources."uglify-js-3.11.3" sources."undefsafe-2.0.3" (sources."union-value-1.0.1" // { dependencies = [ @@ -94932,7 +96441,7 @@ in sha256 = "886069ecc5eedf0371b948e8ff66e7f2943c85fe7cfdaa7183e1a3572d55852b"; }; dependencies = [ - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-regex-4.1.0" sources."ansi-styles-3.2.1" sources."argparse-1.0.10" @@ -95628,10 +97137,10 @@ in sources."semver-6.3.0" ]; }) - sources."parse-english-4.1.3" + sources."parse-english-4.2.0" sources."parse-entities-2.0.0" sources."parse-json-5.1.0" - sources."parse-latin-4.2.1" + sources."parse-latin-4.3.0" sources."parse5-6.0.1" sources."path-exists-4.0.0" sources."path-is-absolute-1.0.1" @@ -95640,7 +97149,7 @@ in sources."pluralize-8.0.0" sources."prepend-http-2.0.0" sources."process-nextick-args-1.0.7" - sources."property-information-5.5.0" + sources."property-information-5.6.0" sources."pump-1.0.3" sources."pump-chain-1.0.0" sources."pupa-2.0.1" @@ -95723,7 +97232,7 @@ in ]; }) sources."string_decoder-0.10.31" - sources."stringify-entities-3.0.1" + sources."stringify-entities-3.1.0" sources."strip-ansi-5.2.0" sources."strip-indent-3.0.0" sources."strip-json-comments-2.0.1" @@ -95773,13 +97282,13 @@ in sources."unique-string-2.0.0" sources."unist-util-inspect-5.0.1" sources."unist-util-is-4.0.2" - sources."unist-util-modify-children-1.1.6" + sources."unist-util-modify-children-2.0.0" sources."unist-util-position-3.1.0" sources."unist-util-remove-position-2.0.1" sources."unist-util-stringify-position-2.0.3" sources."unist-util-visit-2.0.3" sources."unist-util-visit-children-1.1.4" - sources."unist-util-visit-parents-3.1.0" + sources."unist-util-visit-parents-3.1.1" (sources."update-notifier-4.1.3" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -96224,10 +97733,10 @@ in sources."@types/debug-4.1.5" sources."@types/http-cache-semantics-4.0.0" sources."@types/keyv-3.1.1" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."@types/responselike-1.0.0" sources."abbrev-1.1.1" - sources."abstract-logging-2.0.0" + sources."abstract-logging-2.0.1" sources."accepts-1.3.7" sources."after-0.8.2" (sources."agent-base-6.0.1" // { @@ -96236,7 +97745,7 @@ in sources."ms-2.1.2" ]; }) - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-regex-2.1.1" sources."ansi-styles-4.3.0" sources."aproba-1.2.0" @@ -96701,7 +98210,7 @@ in }; dependencies = [ sources."adm-zip-0.4.13" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."asn1-0.2.4" sources."assert-plus-1.0.0" sources."async-2.6.3" @@ -96760,7 +98269,7 @@ in sources."mime-types-2.1.27" sources."minimatch-3.0.4" sources."moment-2.29.1" - (sources."node-appc-1.1.1" // { + (sources."node-appc-1.1.2" // { dependencies = [ sources."async-3.2.0" sources."colors-1.4.0" @@ -96898,7 +98407,7 @@ in sources."mooremachine-2.3.0" sources."mute-stream-0.0.8" sources."mv-2.1.1" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."ncp-2.0.0" sources."once-1.3.2" sources."path-is-absolute-1.0.1" @@ -97026,7 +98535,7 @@ in sha512 = "N8E1X543CWEjg0/A70ZnA/kfAfAY/uogILsIuWBhHGxzv9kaJaj7/JCSwDiBH86CPEy37chSgW86KxVeYKsswQ=="; }; dependencies = [ - sources."@types/node-6.14.12" + sources."@types/node-6.14.13" sources."ansi-0.3.1" sources."ansi-regex-2.1.1" sources."ansi-styles-2.2.1" @@ -97052,7 +98561,7 @@ in sources."strip-ansi-3.0.1" sources."supports-color-2.0.0" sources."temp-0.8.4" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."wordwrap-0.0.3" sources."wrappy-1.0.2" ]; @@ -97146,10 +98655,10 @@ in uglify-js = nodeEnv.buildNodePackage { name = "uglify-js"; packageName = "uglify-js"; - version = "3.11.1"; + version = "3.11.3"; src = fetchurl { - url = "https://registry.npmjs.org/uglify-js/-/uglify-js-3.11.1.tgz"; - sha512 = "OApPSuJcxcnewwjSGGfWOjx3oix5XpmrK9Z2j0fTRlHGoZ49IU6kExfZTM0++fCArOOCet+vIfWwFHbvWqwp6g=="; + url = "https://registry.npmjs.org/uglify-js/-/uglify-js-3.11.3.tgz"; + sha512 = "wDRziHG94mNj2n3R864CvYw/+pc9y/RNImiTyrrf8BzgWn75JgFSwYvXrtZQMnMnOp/4UTrf3iCSQxSStPiByA=="; }; buildInputs = globalBuildInputs; meta = { @@ -97161,6 +98670,24 @@ in bypassCache = true; reconstructLock = true; }; + undollar = nodeEnv.buildNodePackage { + name = "undollar"; + packageName = "undollar"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/undollar/-/undollar-1.0.0.tgz"; + sha512 = "nV0/O+9yV/We9a0ZwH8LTXW9Aqit2em7zMpHetUk/kXxw6ongHs4D8PyPPryYGx5/w8iHqu6dJ+qJjHtA7SfUw=="; + }; + buildInputs = globalBuildInputs; + meta = { + description = "undollar strips the dollar sign from the beginning of the terminal command you just copied from StackOverflow when you were searching for what arguments to pass to `tar` (`xzf`? `xvfJ`? Or was it `xvf`? You never seem to remember)."; + homepage = "https://github.com/ImFeelingDucky/undollar#readme"; + license = "MIT"; + }; + production = true; + bypassCache = true; + reconstructLock = true; + }; ungit = nodeEnv.buildNodePackage { name = "ungit"; packageName = "ungit"; @@ -97174,7 +98701,7 @@ in sources."@primer/octicons-11.0.0" sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."abbrev-1.1.1" sources."accepts-1.3.7" sources."after-0.8.2" @@ -97207,13 +98734,13 @@ in ]; }) sources."callsite-1.0.0" - sources."cliui-7.0.1" + sources."cliui-7.0.3" sources."clone-2.1.2" sources."clone-response-1.0.2" sources."color-3.0.0" sources."color-convert-1.9.3" sources."color-name-1.1.3" - sources."color-string-1.5.3" + sources."color-string-1.5.4" sources."colors-1.4.0" sources."colorspace-1.1.2" sources."component-bind-1.0.0" @@ -97234,7 +98761,7 @@ in sources."depd-1.1.2" sources."destroy-1.0.4" sources."diff-4.0.2" - sources."diff2html-3.1.13" + sources."diff2html-3.1.14" sources."dnd-page-scroll-0.0.4" sources."duplexer3-0.1.4" sources."ee-first-1.1.1" @@ -97259,7 +98786,7 @@ in ]; }) sources."engine.io-parser-2.2.1" - sources."escalade-3.1.0" + sources."escalade-3.1.1" sources."escape-html-1.0.3" sources."etag-1.8.1" sources."eve-0.5.4" @@ -97462,10 +98989,10 @@ in sources."wrappy-1.0.2" sources."ws-7.3.1" sources."xmlhttprequest-ssl-1.5.5" - sources."y18n-5.0.2" + sources."y18n-5.0.4" sources."yallist-2.1.2" sources."yargs-16.0.3" - sources."yargs-parser-20.2.1" + sources."yargs-parser-20.2.3" sources."yeast-0.1.2" ]; buildInputs = globalBuildInputs; @@ -97496,7 +99023,7 @@ in sources."brace-expansion-1.1.11" sources."canvas-2.6.1" sources."chownr-1.1.4" - (sources."cliui-7.0.1" // { + (sources."cliui-7.0.3" // { dependencies = [ sources."ansi-regex-5.0.0" sources."is-fullwidth-code-point-3.0.0" @@ -97536,7 +99063,7 @@ in sources."delegates-1.0.0" sources."detect-libc-1.0.3" sources."emoji-regex-8.0.0" - sources."escalade-3.1.0" + sources."escalade-3.1.1" sources."fs-minipass-1.2.7" sources."fs.realpath-1.0.0" sources."gauge-2.7.4" @@ -97557,7 +99084,7 @@ in sources."minizlib-1.3.3" sources."mkdirp-0.5.5" sources."ms-2.1.2" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."needle-2.5.2" sources."node-fetch-2.6.1" sources."node-pre-gyp-0.11.0" @@ -97636,9 +99163,9 @@ in ]; }) sources."wrappy-1.0.2" - sources."y18n-5.0.2" + sources."y18n-5.0.4" sources."yallist-3.1.1" - (sources."yargs-16.0.3" // { + (sources."yargs-16.1.0" // { dependencies = [ sources."ansi-regex-5.0.0" sources."is-fullwidth-code-point-3.0.0" @@ -97646,7 +99173,7 @@ in sources."strip-ansi-6.0.0" ]; }) - sources."yargs-parser-20.2.1" + sources."yargs-parser-20.2.3" ]; buildInputs = globalBuildInputs; meta = { @@ -97661,10 +99188,10 @@ in vega-lite = nodeEnv.buildNodePackage { name = "vega-lite"; packageName = "vega-lite"; - version = "4.16.8"; + version = "4.17.0"; src = fetchurl { - url = "https://registry.npmjs.org/vega-lite/-/vega-lite-4.16.8.tgz"; - sha512 = "WB9OOHbFyIaLvx5k9m8XGEaB2p0sTC9Srtsm9ETQ6EoOksdLQtVesxCalgT+cGaUVtHAiqBNmLh/nQGxZXml7w=="; + url = "https://registry.npmjs.org/vega-lite/-/vega-lite-4.17.0.tgz"; + sha512 = "MO2XsaVZqx6iWWmVA5vwYFamvhRUsKfVp7n0pNlkZ2/21cuxelSl92EePZ2YGmzL6z4/3K7r/45zaG8p+qNHeg=="; }; dependencies = [ sources."@types/clone-2.1.0" @@ -97672,12 +99199,12 @@ in sources."ansi-regex-5.0.0" sources."ansi-styles-4.3.0" sources."array-flat-polyfill-1.0.1" - sources."cliui-7.0.1" + sources."cliui-7.0.3" sources."clone-2.1.2" sources."color-convert-2.0.1" sources."color-name-1.1.4" sources."emoji-regex-8.0.0" - sources."escalade-3.1.0" + sources."escalade-3.1.1" sources."fast-deep-equal-3.1.3" sources."fast-json-stable-stringify-2.1.0" sources."get-caller-file-2.0.5" @@ -97686,14 +99213,14 @@ in sources."require-directory-2.1.1" sources."string-width-4.2.0" sources."strip-ansi-6.0.0" - sources."tslib-2.0.2" + sources."tslib-2.0.3" sources."vega-event-selector-2.0.6" sources."vega-expression-3.0.0" - sources."vega-util-1.15.3" + sources."vega-util-1.16.0" sources."wrap-ansi-7.0.0" - sources."y18n-5.0.2" + sources."y18n-5.0.4" sources."yargs-16.0.3" - sources."yargs-parser-20.2.1" + sources."yargs-parser-20.2.3" ]; buildInputs = globalBuildInputs; meta = { @@ -97811,7 +99338,7 @@ in sources."vscode-nls-4.1.2" ]; }) - (sources."vscode-json-languageservice-3.9.0" // { + (sources."vscode-json-languageservice-3.9.1" // { dependencies = [ sources."jsonc-parser-2.3.1" sources."vscode-nls-5.0.0" @@ -97848,8 +99375,8 @@ in dependencies = [ sources."@types/json5-0.0.30" sources."@types/mocha-7.0.2" - sources."@types/node-8.10.64" - sources."@types/vscode-1.49.0" + sources."@types/node-8.10.65" + sources."@types/vscode-1.50.0" sources."@types/yauzl-2.9.1" sources."@webassemblyjs/ast-1.9.0" sources."@webassemblyjs/floating-point-hex-parser-1.9.0" @@ -97872,7 +99399,7 @@ in sources."@xtuc/ieee754-1.2.0" sources."@xtuc/long-4.2.2" sources."acorn-6.4.2" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ajv-errors-1.0.1" sources."ajv-keywords-3.5.2" sources."ansi-colors-3.2.3" @@ -98123,7 +99650,7 @@ in sources."to-regex-range-2.1.1" ]; }) - sources."flat-4.1.0" + sources."flat-4.1.1" (sources."flush-write-stream-1.1.1" // { dependencies = [ sources."isarray-1.0.0" @@ -98277,7 +99804,7 @@ in sources."move-concurrently-1.0.1" sources."ms-2.1.1" sources."mute-stream-0.0.8" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."nanomatch-1.2.13" sources."neo-async-2.6.2" sources."nice-try-1.0.5" @@ -98521,7 +100048,7 @@ in sources."semver-6.3.0" ]; }) - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tty-browserify-0.0.0" sources."tunnel-0.0.4" sources."typed-rest-client-1.2.0" @@ -98566,8 +100093,8 @@ in sources."vscode-debugprotocol-1.42.0" (sources."watchpack-1.7.4" // { dependencies = [ - sources."chokidar-3.4.2" - sources."readdirp-3.4.0" + sources."chokidar-3.4.3" + sources."readdirp-3.5.0" ]; }) (sources."watchpack-chokidar2-2.0.0" // { @@ -98670,7 +100197,7 @@ in }; dependencies = [ sources."absolute-0.0.1" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-escapes-3.2.0" sources."ansi-red-0.1.1" sources."ansi-regex-3.0.0" @@ -98910,10 +100437,10 @@ in sources."toml-2.3.6" sources."tough-cookie-2.5.0" sources."trim-repeated-1.0.0" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" - sources."uglify-js-3.11.1" + sources."uglify-js-3.11.3" sources."uid-0.0.2" sources."unbzip2-stream-1.4.3" sources."unyield-0.0.1" @@ -98972,14 +100499,14 @@ in sources."@starptech/rehype-webparser-0.10.0" sources."@starptech/webparser-0.10.0" sources."@szmarczak/http-timer-1.1.2" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."@types/unist-2.0.3" sources."@types/vfile-3.0.2" sources."@types/vfile-message-2.0.0" sources."abbrev-1.1.1" sources."acorn-6.4.2" sources."acorn-jsx-5.3.1" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ajv-keywords-2.1.1" (sources."ansi-align-3.0.0" // { dependencies = [ @@ -99172,7 +100699,7 @@ in sources."debug-4.3.0" sources."eslint-scope-5.1.1" sources."espree-6.2.1" - sources."vue-eslint-parser-7.1.0" + sources."vue-eslint-parser-7.1.1" ]; }) sources."eslint-scope-4.0.3" @@ -99542,7 +101069,7 @@ in sources."pretty-format-23.6.0" sources."process-nextick-args-2.0.1" sources."progress-2.0.3" - sources."property-information-5.5.0" + sources."property-information-5.6.0" sources."proto-list-1.2.4" sources."pseudomap-1.0.2" sources."pump-3.0.0" @@ -99560,7 +101087,7 @@ in ]; }) sources."readable-stream-2.3.7" - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."redent-2.0.0" sources."regenerator-runtime-0.11.1" sources."regex-not-1.0.2" @@ -99756,7 +101283,7 @@ in sources."trim-newlines-2.0.0" sources."trim-trailing-lines-1.1.3" sources."trough-1.0.5" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tslint-5.20.1" sources."tsutils-2.29.0" sources."type-check-0.3.2" @@ -99837,7 +101364,7 @@ in }) sources."vfile-sort-2.2.2" sources."vfile-statistics-1.1.4" - (sources."vscode-css-languageservice-4.3.4" // { + (sources."vscode-css-languageservice-4.3.5" // { dependencies = [ sources."vscode-languageserver-types-3.16.0-next.2" sources."vscode-uri-2.1.2" @@ -99935,7 +101462,7 @@ in sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" sources."@types/minimatch-3.0.3" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."JSONSelect-0.2.1" sources."acorn-7.4.1" sources."acorn-jsx-5.3.1" @@ -100026,7 +101553,7 @@ in sources."caseless-0.12.0" sources."chalk-4.1.0" sources."cheerio-1.0.0-rc.3" - sources."chokidar-3.4.2" + sources."chokidar-3.4.3" (sources."chrome-launcher-0.13.4" // { dependencies = [ sources."mkdirp-0.5.5" @@ -100442,7 +101969,7 @@ in ]; }) sources."mz-2.7.0" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."nanomatch-1.2.13" sources."natural-compare-1.4.0" sources."natural-compare-lite-1.4.0" @@ -100544,7 +102071,7 @@ in }) sources."readable-stream-3.6.0" sources."readdir-glob-1.1.1" - sources."readdirp-3.4.0" + sources."readdirp-3.5.0" sources."regenerator-runtime-0.13.7" sources."regex-not-1.0.2" (sources."regexp.prototype.flags-1.3.0" // { @@ -100850,12 +102377,17 @@ in webpack = nodeEnv.buildNodePackage { name = "webpack"; packageName = "webpack"; - version = "4.44.2"; + version = "5.1.3"; src = fetchurl { - url = "https://registry.npmjs.org/webpack/-/webpack-4.44.2.tgz"; - sha512 = "6KJVGlCxYdISyurpQ0IPTklv+DULv05rs2hseIXer6D7KrUicRDLFb4IUM1S6LUAKypPM/nSiVSuv8jHu1m3/Q=="; + url = "https://registry.npmjs.org/webpack/-/webpack-5.1.3.tgz"; + sha512 = "bNBF5EOpt5a6NeCBFu0+8KJtG61cVmOb2b/a5tPNRLz3OWgDpHMbmnDkaSm3nf/UQ6ufw4PWYGVsVOAi8UfL2A=="; }; dependencies = [ + sources."@types/eslint-7.2.4" + sources."@types/eslint-scope-3.7.0" + sources."@types/estree-0.0.45" + sources."@types/json-schema-7.0.6" + sources."@types/node-14.11.10" sources."@webassemblyjs/ast-1.9.0" sources."@webassemblyjs/floating-point-hex-parser-1.9.0" sources."@webassemblyjs/helper-api-error-1.9.0" @@ -100876,143 +102408,18 @@ in sources."@webassemblyjs/wast-printer-1.9.0" sources."@xtuc/ieee754-1.2.0" sources."@xtuc/long-4.2.2" - sources."acorn-6.4.2" - sources."ajv-6.12.5" - sources."ajv-errors-1.0.1" + sources."acorn-8.0.4" + sources."ajv-6.12.6" sources."ajv-keywords-3.5.2" - sources."anymatch-3.1.1" - sources."aproba-1.2.0" - sources."arr-diff-4.0.0" - sources."arr-flatten-1.1.0" - sources."arr-union-3.1.0" - sources."array-unique-0.3.2" - (sources."asn1.js-5.4.1" // { - dependencies = [ - sources."bn.js-4.11.9" - ]; - }) - (sources."assert-1.5.0" // { - dependencies = [ - sources."inherits-2.0.1" - sources."util-0.10.3" - ]; - }) - sources."assign-symbols-1.0.0" - sources."async-each-1.0.3" - sources."atob-2.1.2" - sources."balanced-match-1.0.0" - (sources."base-0.11.2" // { - dependencies = [ - sources."define-property-1.0.0" - ]; - }) - sources."base64-js-1.3.1" - sources."big.js-5.2.2" - sources."binary-extensions-2.1.0" - sources."bindings-1.5.0" - sources."bluebird-3.7.2" - sources."bn.js-5.1.3" - sources."brace-expansion-1.1.11" - (sources."braces-2.3.2" // { - dependencies = [ - sources."extend-shallow-2.0.1" - ]; - }) - sources."brorand-1.1.0" - sources."browserify-aes-1.2.0" - sources."browserify-cipher-1.0.1" - sources."browserify-des-1.0.2" - (sources."browserify-rsa-4.0.1" // { - dependencies = [ - sources."bn.js-4.11.9" - ]; - }) - (sources."browserify-sign-4.2.1" // { - dependencies = [ - sources."readable-stream-3.6.0" - sources."safe-buffer-5.2.1" - ]; - }) - sources."browserify-zlib-0.2.0" - sources."buffer-4.9.2" + sources."browserslist-4.14.5" sources."buffer-from-1.1.1" - sources."buffer-xor-1.0.3" - sources."builtin-status-codes-3.0.0" - sources."cacache-12.0.4" - sources."cache-base-1.0.1" - (sources."chokidar-3.4.2" // { - dependencies = [ - sources."braces-3.0.2" - sources."fill-range-7.0.1" - sources."is-number-7.0.0" - sources."to-regex-range-5.0.1" - ]; - }) - sources."chownr-1.1.4" + sources."caniuse-lite-1.0.30001148" sources."chrome-trace-event-1.0.2" - sources."cipher-base-1.0.4" - (sources."class-utils-0.3.6" // { - dependencies = [ - sources."define-property-0.2.5" - (sources."is-accessor-descriptor-0.1.6" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - (sources."is-data-descriptor-0.1.4" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - sources."is-descriptor-0.1.6" - sources."kind-of-5.1.0" - ]; - }) - sources."collection-visit-1.0.0" sources."commander-2.20.3" - sources."commondir-1.0.1" - sources."component-emitter-1.3.0" - sources."concat-map-0.0.1" - sources."concat-stream-1.6.2" - sources."console-browserify-1.2.0" - sources."constants-browserify-1.0.0" - sources."copy-concurrently-1.0.5" - sources."copy-descriptor-0.1.1" - sources."core-util-is-1.0.2" - (sources."create-ecdh-4.0.4" // { - dependencies = [ - sources."bn.js-4.11.9" - ]; - }) - sources."create-hash-1.2.0" - sources."create-hmac-1.1.7" - sources."crypto-browserify-3.12.0" - sources."cyclist-1.0.1" - sources."debug-2.6.9" - sources."decode-uri-component-0.2.0" - sources."define-property-2.0.2" - sources."des.js-1.0.1" - (sources."diffie-hellman-5.0.3" // { - dependencies = [ - sources."bn.js-4.11.9" - ]; 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- }) - (sources."webpack-sources-1.4.3" // { - dependencies = [ - sources."source-map-0.6.1" - ]; - }) - sources."worker-farm-1.7.0" - sources."wrappy-1.0.2" - sources."xtend-4.0.2" - sources."y18n-4.0.0" - sources."yallist-3.1.1" + sources."watchpack-2.0.0" + sources."webpack-sources-2.0.1" ]; buildInputs = globalBuildInputs; meta = { @@ -101382,302 +102486,72 @@ in webpack-cli = nodeEnv.buildNodePackage { name = "webpack-cli"; packageName = "webpack-cli"; - version = "3.3.12"; + version = "4.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/webpack-cli/-/webpack-cli-3.3.12.tgz"; - sha512 = "NVWBaz9k839ZH/sinurM+HcDvJOTXwSjYp1ku+5XKeOC03z8v5QitnK/x+lAxGXFyhdayoIf/GOpv85z3/xPag=="; + url = "https://registry.npmjs.org/webpack-cli/-/webpack-cli-4.1.0.tgz"; + sha512 = "NdhxXMZmoik62Y05t0h1y65LjBM7BwFPq311ihXuMM3RY6dlc4KkCTyHLzTuBEc+bqq6d3xh+CWmU0xRexNJBA=="; }; dependencies = [ - sources."ansi-regex-4.1.0" + sources."@webpack-cli/info-1.0.2" + sources."@webpack-cli/serve-1.0.1" + sources."ansi-colors-4.1.1" + sources."ansi-escapes-4.3.1" sources."ansi-styles-3.2.1" - sources."arr-diff-4.0.0" - sources."arr-flatten-1.1.0" - sources."arr-union-3.1.0" - sources."array-unique-0.3.2" - sources."assign-symbols-1.0.0" - sources."atob-2.1.2" - (sources."base-0.11.2" // { - dependencies = [ - sources."define-property-1.0.0" - ]; 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- }) - sources."homedir-polyfill-1.0.3" - sources."import-local-2.0.0" - sources."inherits-2.0.4" - sources."ini-1.3.5" - sources."interpret-1.4.0" - sources."is-accessor-descriptor-1.0.0" - sources."is-buffer-1.1.6" - sources."is-data-descriptor-1.0.0" - sources."is-descriptor-1.0.2" - sources."is-extendable-0.1.1" - sources."is-extglob-2.1.1" - sources."is-fullwidth-code-point-2.0.0" - sources."is-glob-4.0.1" - (sources."is-number-3.0.0" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - sources."is-plain-object-2.0.4" - sources."is-windows-1.0.2" - sources."isarray-1.0.0" + sources."human-signals-1.1.1" + sources."import-local-3.0.2" + sources."interpret-2.2.0" + sources."is-stream-2.0.0" sources."isexe-2.0.0" - sources."isobject-3.0.1" - sources."json5-1.0.1" - sources."kind-of-6.0.3" - sources."loader-utils-1.4.0" - sources."locate-path-3.0.0" - sources."map-cache-0.2.2" - sources."map-visit-1.0.0" - sources."memory-fs-0.5.0" - sources."micromatch-3.1.10" - sources."minimist-1.2.5" - (sources."mixin-deep-1.3.2" // { - dependencies = [ - sources."is-extendable-1.0.1" - ]; - }) - sources."ms-2.0.0" - sources."nanomatch-1.2.13" - sources."nice-try-1.0.5" - (sources."object-copy-0.1.0" // { - dependencies = [ - sources."define-property-0.2.5" - sources."is-accessor-descriptor-0.1.6" - sources."is-data-descriptor-0.1.4" - (sources."is-descriptor-0.1.6" // { - dependencies = [ - sources."kind-of-5.1.0" - ]; - }) - sources."kind-of-3.2.2" - ]; - }) - sources."object-visit-1.0.1" - sources."object.pick-1.3.0" + sources."locate-path-5.0.0" + sources."lodash-4.17.20" + sources."merge-stream-2.0.0" + sources."mimic-fn-2.1.0" + sources."npm-run-path-4.0.1" + sources."once-1.4.0" + sources."onetime-5.1.2" sources."p-limit-2.3.0" - sources."p-locate-3.0.0" + sources."p-locate-4.1.0" sources."p-try-2.2.0" - sources."parse-passwd-1.0.0" - sources."pascalcase-0.1.1" - sources."path-exists-3.0.0" - sources."path-key-2.0.1" - sources."pkg-dir-3.0.0" - sources."posix-character-classes-0.1.1" - sources."process-nextick-args-2.0.1" - sources."prr-1.0.1" - sources."readable-stream-2.3.7" - sources."regex-not-1.0.2" - sources."repeat-element-1.1.3" - sources."repeat-string-1.6.1" - sources."require-directory-2.1.1" - sources."require-main-filename-2.0.0" - sources."resolve-cwd-2.0.0" - (sources."resolve-dir-1.0.1" // { - dependencies = [ - sources."global-modules-1.0.0" - ]; - }) - sources."resolve-from-3.0.0" - sources."resolve-url-0.2.1" - sources."ret-0.1.15" - sources."safe-buffer-5.1.2" - sources."safe-regex-1.1.0" - sources."semver-5.7.1" - sources."set-blocking-2.0.0" - (sources."set-value-2.0.1" // { - dependencies = [ - sources."extend-shallow-2.0.1" - ]; - }) - sources."shebang-command-1.2.0" - sources."shebang-regex-1.0.0" - (sources."snapdragon-0.8.2" // { - dependencies = [ - sources."define-property-0.2.5" - sources."extend-shallow-2.0.1" - (sources."is-accessor-descriptor-0.1.6" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - (sources."is-data-descriptor-0.1.4" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - sources."is-descriptor-0.1.6" - sources."kind-of-5.1.0" - ]; - }) - (sources."snapdragon-node-2.1.1" // { - dependencies = [ - sources."define-property-1.0.0" - ]; - }) - (sources."snapdragon-util-3.0.1" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - sources."source-map-0.5.7" - sources."source-map-resolve-0.5.3" - sources."source-map-url-0.4.0" - sources."split-string-3.1.0" - (sources."static-extend-0.1.2" // { - dependencies = [ - sources."define-property-0.2.5" - (sources."is-accessor-descriptor-0.1.6" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - (sources."is-data-descriptor-0.1.4" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - sources."is-descriptor-0.1.6" - sources."kind-of-5.1.0" - ]; - }) - sources."string-width-3.1.0" - sources."string_decoder-1.1.1" - sources."strip-ansi-5.2.0" - sources."supports-color-6.1.0" - sources."tapable-1.1.3" - (sources."to-object-path-0.3.0" // { - dependencies = [ - sources."kind-of-3.2.2" - ]; - }) - sources."to-regex-3.0.2" - sources."to-regex-range-2.1.1" - sources."union-value-1.0.1" - (sources."unset-value-1.0.0" // { - dependencies = [ - (sources."has-value-0.3.1" // { - dependencies = [ - sources."isobject-2.1.0" - ]; - }) - sources."has-values-0.1.4" - ]; - }) - sources."urix-0.1.0" - sources."use-3.1.1" - sources."util-deprecate-1.0.2" + sources."path-exists-4.0.0" + sources."path-key-3.1.1" + sources."path-parse-1.0.6" + sources."pkg-dir-4.2.0" + sources."pump-3.0.0" + sources."rechoir-0.7.0" + sources."reduce-flatten-2.0.0" + sources."resolve-1.17.0" + sources."resolve-cwd-3.0.0" + sources."resolve-from-5.0.0" + sources."shebang-command-2.0.0" + sources."shebang-regex-3.0.0" + sources."signal-exit-3.0.3" + sources."strip-final-newline-2.0.0" + sources."supports-color-5.5.0" + sources."table-layout-1.0.1" + sources."type-fest-0.11.0" + sources."typical-5.2.0" sources."v8-compile-cache-2.1.1" - sources."which-1.3.1" - sources."which-module-2.0.0" - sources."wrap-ansi-5.1.0" - sources."y18n-4.0.0" - sources."yargs-13.3.2" - sources."yargs-parser-13.1.2" + sources."webpack-merge-4.2.2" + sources."which-2.0.2" + sources."wordwrapjs-4.0.0" + sources."wrappy-1.0.2" ]; buildInputs = globalBuildInputs; meta = { @@ -101700,9 +102574,9 @@ in dependencies = [ sources."@types/glob-7.1.3" sources."@types/minimatch-3.0.3" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."accepts-1.3.7" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ajv-errors-1.0.1" sources."ajv-keywords-3.5.2" sources."ansi-colors-3.2.4" @@ -101993,7 +102867,7 @@ in sources."ms-2.0.0" sources."multicast-dns-6.2.3" sources."multicast-dns-service-types-1.1.0" - sources."nan-2.14.1" + sources."nan-2.14.2" sources."nanomatch-1.2.13" sources."negotiator-0.6.2" sources."nice-try-1.0.5" @@ -102292,10 +103166,10 @@ in copy-webpack-plugin = nodeEnv.buildNodePackage { name = "copy-webpack-plugin"; packageName = "copy-webpack-plugin"; - version = "6.2.0"; + version = "6.2.1"; src = fetchurl { - url = "https://registry.npmjs.org/copy-webpack-plugin/-/copy-webpack-plugin-6.2.0.tgz"; - sha512 = "1s/VbhIX73FBFBYF4D0KdeBLkjEnAlCQn0Ufo2a/IyJ41jHpQ9ZzM4JAfbE7yTOhbmwRFkARErJ/XIiLceja6Q=="; + url = "https://registry.npmjs.org/copy-webpack-plugin/-/copy-webpack-plugin-6.2.1.tgz"; + sha512 = "VH2ZTMIBsx4p++Lmpg77adZ0KUyM5gFR/9cuTrbneNnJlcQXUFvsNariPqq2dq2kV3F2skHiDGPQCyKWy1+U0Q=="; }; dependencies = [ sources."@nodelib/fs.scandir-2.1.3" @@ -102304,7 +103178,7 @@ in sources."@npmcli/move-file-1.0.1" sources."@types/json-schema-7.0.6" sources."aggregate-error-3.1.0" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ajv-keywords-3.5.2" sources."array-union-2.1.0" sources."balanced-match-1.0.0" @@ -102377,7 +103251,7 @@ in sources."rimraf-3.0.2" sources."run-parallel-1.1.9" sources."safe-buffer-5.2.1" - sources."schema-utils-2.7.1" + sources."schema-utils-3.0.0" sources."semver-6.3.0" sources."serialize-javascript-5.0.1" sources."slash-3.0.0" @@ -102423,7 +103297,7 @@ in sources."@protobufjs/pool-1.1.0" sources."@protobufjs/utf8-1.1.0" sources."@types/long-4.0.1" - sources."@types/node-13.13.23" + sources."@types/node-13.13.26" sources."addr-to-ip-port-1.5.1" sources."airplay-js-0.3.0" sources."balanced-match-1.0.0" @@ -102672,7 +103546,7 @@ in sources."ms-2.1.2" ]; }) - sources."ut_pex-2.0.0" + sources."ut_pex-2.0.1" sources."utf-8-validate-5.0.2" sources."util-deprecate-1.0.2" sources."videostream-3.2.1" @@ -102771,7 +103645,7 @@ in sources."prettier-2.0.5" sources."request-light-0.2.5" sources."sprintf-js-1.0.3" - (sources."vscode-json-languageservice-3.9.0" // { + (sources."vscode-json-languageservice-3.9.1" // { dependencies = [ sources."vscode-languageserver-types-3.16.0-next.2" sources."vscode-nls-5.0.0" @@ -102834,17 +103708,17 @@ in sources."@babel/code-frame-7.10.4" sources."@babel/helper-validator-identifier-7.10.4" sources."@babel/highlight-7.10.4" - sources."@babel/runtime-7.11.2" + sources."@babel/runtime-7.12.1" sources."@mrmlnc/readdir-enhanced-2.2.1" sources."@nodelib/fs.stat-1.1.3" sources."@sindresorhus/is-0.7.0" sources."@types/glob-7.1.3" sources."@types/minimatch-3.0.3" - sources."@types/node-14.11.5" + sources."@types/node-14.11.10" sources."@types/normalize-package-data-2.4.0" sources."JSONStream-1.3.5" sources."aggregate-error-3.1.0" - sources."ajv-6.12.5" + sources."ajv-6.12.6" sources."ansi-0.3.1" sources."ansi-align-2.0.0" sources."ansi-escapes-3.2.0" @@ -103607,7 +104481,7 @@ in sources."to-regex-range-2.1.1" sources."tough-cookie-3.0.1" sources."trim-newlines-1.0.0" - sources."tslib-1.14.0" + sources."tslib-1.14.1" sources."tunnel-0.0.6" sources."tunnel-agent-0.6.0" sources."tweetnacl-0.14.5" diff --git a/pkgs/development/ocaml-modules/camlimages/4.1.nix b/pkgs/development/ocaml-modules/camlimages/4.1.nix deleted file mode 100644 index d2d626acbfe..00000000000 --- a/pkgs/development/ocaml-modules/camlimages/4.1.nix +++ /dev/null @@ -1,42 +0,0 @@ -{stdenv, fetchurl, omake, ocaml, libtiff, libjpeg, libpng, giflib, findlib, libXpm, freetype, graphicsmagick, ghostscript }: - -assert stdenv.lib.versionAtLeast (stdenv.lib.getVersion ocaml) "4.00"; - -if stdenv.lib.versionAtLeast ocaml.version "4.06" -then throw "camlimages-4.1.2 is not available for OCaml ${ocaml.version}" -else - -let - pname = "camlimages"; - version = "4.1.2"; -in - -stdenv.mkDerivation { - name = "${pname}-${version}"; - - src = fetchurl { - url = "https://bitbucket.org/camlspotter/camlimages/get/${version}.tar.bz2"; - sha256 = "1ppddhfknpirj1vilm5dxgyp82kf7ahpvjmh7z75a1fnaqv3kpki"; - }; - - buildInputs = [ ocaml omake findlib graphicsmagick ghostscript ]; - - propagatedBuildInputs = [libtiff libjpeg libpng giflib freetype libXpm ]; - - createFindlibDestdir = true; - - buildPhase = '' - omake - ''; - - installPhase = '' - omake install - ''; - - meta = with stdenv.lib; { - homepage = "https://bitbucket.org/camlspotter/camlimages"; - description = "OCaml image processing library"; - license = licenses.lgpl2; - maintainers = [ maintainers.vbgl ]; - }; -} diff --git a/pkgs/development/ocaml-modules/camlimages/default.nix b/pkgs/development/ocaml-modules/camlimages/default.nix index 1ea3e78a06b..5874e7a52d3 100644 --- a/pkgs/development/ocaml-modules/camlimages/default.nix +++ b/pkgs/development/ocaml-modules/camlimages/default.nix @@ -1,21 +1,27 @@ -{ lib, fetchzip, buildDunePackage, configurator, cppo, lablgtk }: +{ lib, fetchFromGitLab, buildDunePackage, dune-configurator, cppo, lablgtk, stdio }: buildDunePackage rec { pname = "camlimages"; - version = "5.0.1"; + version = "5.0.3"; - src = fetchzip { - url = "https://bitbucket.org/camlspotter/${pname}/get/${version}.tar.gz"; - sha256 = "1figrgzsdrrxzfza0bhz0225g1rwawdf5x2m9lw2kzrdb815khs5"; + useDune2 = true; + + minimumOCamlVersion = "4.07"; + + src = fetchFromGitLab { + owner = "camlspotter"; + repo = pname; + rev = version; + sha256 = "1ng9pkvrzlibfyf97iqvmbsqcykz8v1ln106xhq9nigih5i68zyd"; }; - buildInputs = [ configurator cppo lablgtk ]; + buildInputs = [ dune-configurator cppo lablgtk stdio ]; meta = with lib; { branch = "5.0"; - homepage = "https://bitbucket.org/camlspotter/camlimages"; + inherit (src.meta) homepage; description = "OCaml image processing library"; - license = licenses.gpl2; + license = licenses.lgpl2; maintainers = [ maintainers.vbgl maintainers.mt-caret ]; }; } diff --git a/pkgs/development/ocaml-modules/cow/default.nix b/pkgs/development/ocaml-modules/cow/default.nix index 787854f8e41..13ee99804d8 100644 --- a/pkgs/development/ocaml-modules/cow/default.nix +++ b/pkgs/development/ocaml-modules/cow/default.nix @@ -2,6 +2,7 @@ , uri, xmlm, omd, ezjsonm }: buildDunePackage rec { + useDune2 = true; minimumOCamlVersion = "4.02.3"; version = "2.4.0"; diff --git a/pkgs/development/ocaml-modules/curly/default.nix b/pkgs/development/ocaml-modules/curly/default.nix index a17ea72140f..236b9c19c92 100644 --- a/pkgs/development/ocaml-modules/curly/default.nix +++ b/pkgs/development/ocaml-modules/curly/default.nix @@ -1,25 +1,26 @@ -{ lib, buildDunePackage, fetchFromGitHub, ocaml +{ stdenv, buildDunePackage, fetchurl, ocaml , result, alcotest, cohttp-lwt-unix, odoc, curl }: buildDunePackage rec { pname = "curly"; - version = "unstable-2019-11-14"; + version = "0.2.0"; minimumOCamlVersion = "4.02"; useDune2 = true; - src = fetchFromGitHub { - owner = "rgrinberg"; - repo = pname; - rev = "33a538c89ef8279d4591454a7f699a4183dde5d0"; - sha256 = "10pxbvf5xrsajaxrccxh2lqhgp3yaf61z9w03rvb2mq44nc2dggz"; + src = fetchurl { + url = "https://github.com/rgrinberg/curly/releases/download/${version}/curly-${version}.tbz"; + sha256 = "07vqdrklar0d5i83ip7sjw2c1v18a9m3anw07vmi5ay29pxzal6k"; }; propagatedBuildInputs = [ result ]; checkInputs = [ alcotest cohttp-lwt-unix ]; - # test dependencies are only available for >= 4.05 - doCheck = lib.versionAtLeast ocaml.version "4.05"; + # test dependencies are only available for >= 4.08 + doCheck = stdenv.lib.versionAtLeast ocaml.version "4.08" + # Some test fails in macOS sandbox + # > Fatal error: exception Unix.Unix_error(Unix.EPERM, "bind", "") + && !stdenv.isDarwin; postPatch = '' substituteInPlace src/curly.ml \ diff --git a/pkgs/development/ocaml-modules/ezjsonm/default.nix b/pkgs/development/ocaml-modules/ezjsonm/default.nix index 781af8a4c98..269288ef3cd 100644 --- a/pkgs/development/ocaml-modules/ezjsonm/default.nix +++ b/pkgs/development/ocaml-modules/ezjsonm/default.nix @@ -1,15 +1,17 @@ -{ stdenv, fetchzip, buildDunePackage, jsonm, hex, sexplib }: +{ stdenv, fetchurl, buildDunePackage, jsonm, hex, sexplib0 }: buildDunePackage rec { pname = "ezjsonm"; - version = "0.6.0"; + version = "1.2.0"; - src = fetchzip { - url = "https://github.com/mirage/${pname}/archive/${version}.tar.gz"; - sha256 = "18g64lhai0bz65b9fil12vlgfpwa9b5apj7x6d7n4zzm18qfazvj"; + useDune2 = true; + + src = fetchurl { + url = "https://github.com/mirage/ezjsonm/releases/download/v${version}/ezjsonm-v${version}.tbz"; + sha256 = "1q6cf63cc614lr141rzhm2w4rhi1snfqai6fmkhvfjs84hfbw2w7"; }; - propagatedBuildInputs = [ jsonm hex sexplib ]; + propagatedBuildInputs = [ jsonm hex sexplib0 ]; meta = { description = "An easy interface on top of the Jsonm library"; diff --git a/pkgs/development/ocaml-modules/gsl/default.nix b/pkgs/development/ocaml-modules/gsl/default.nix new file mode 100644 index 00000000000..c292c3d6ab5 --- /dev/null +++ b/pkgs/development/ocaml-modules/gsl/default.nix @@ -0,0 +1,24 @@ +{ lib, fetchurl, buildDunePackage, pkg-config, gsl +, dune-configurator +}: + +buildDunePackage rec { + pname = "gsl"; + version = "1.24.3"; + + minimumOCamlVersion = "4.08"; + + src = fetchurl { + url = "https://github.com/mmottl/gsl-ocaml/releases/download/${version}/gsl-${version}.tbz"; + sha256 = "1mpzcgbrha2l8iikqbmn32668v2mnnsykxg5n5jgs0qnskn2nvrn"; + }; + + buildInputs = [ dune-configurator gsl pkg-config ]; + + meta = { + homepage = "https://mmottl.github.io/gsl-ocaml/"; + description = "OCaml bindings to the GNU Scientific Library"; + license = lib.licenses.gpl3Plus; + maintainers = [ lib.maintainers.vbgl ]; + }; +} diff --git a/pkgs/development/ocaml-modules/io-page/default.nix b/pkgs/development/ocaml-modules/io-page/default.nix index 06bd01fefac..31ae0cfc19e 100644 --- a/pkgs/development/ocaml-modules/io-page/default.nix +++ b/pkgs/development/ocaml-modules/io-page/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, buildDunePackage, configurator, cstruct, bigarray-compat, ounit }: +{ stdenv, fetchurl, buildDunePackage, cstruct, bigarray-compat, ounit }: buildDunePackage rec { pname = "io-page"; diff --git a/pkgs/development/ocaml-modules/janestreet/0.13.nix b/pkgs/development/ocaml-modules/janestreet/0.13.nix index b92027a65a0..9ab45aa5b30 100644 --- a/pkgs/development/ocaml-modules/janestreet/0.13.nix +++ b/pkgs/development/ocaml-modules/janestreet/0.13.nix @@ -6,6 +6,7 @@ , ppxlib , re , openssl +, zarith }: rec { @@ -392,6 +393,13 @@ rec { propagatedBuildInputs = [ async ]; }; + async_interactive = janePackage { + pname = "async_interactive"; + hash = "1ma24pi3hqzrs1k12sc0aarhf42fap8nl1h7id6k01wp6s3yqi5d"; + meta.description = "Utilities for building simple command-line based user interfaces"; + propagatedBuildInputs = [ async ]; + }; + re2 = janePackage { pname = "re2"; hash = "0hmizznlzilynn5kh6149bbpkfw2l0xi7zi1y1fxfww2ma3wpim0"; @@ -477,6 +485,85 @@ rec { propagatedBuildInputs = [ async expect_test_helpers_kernel ]; }; + posixat = janePackage { + pname = "posixat"; + hash = "122fmd6v7fhiiivkxra539b5w3p5xkkd8mcjzvyb2msyq5zc6xa2"; + propagatedBuildInputs = [ ppx_optcomp ppx_sexp_conv ]; + meta.description = "Binding to the posix *at functions"; + }; + + shexp = janePackage { + pname = "shexp"; + hash = "0zdcyix0gdn4xmvbjzhbig63xw9jnw8ixj3ngs6g4k2vk77rs0gk"; + propagatedBuildInputs = [ posixat spawn ]; + meta.description = "Process library and s-expression based shell"; + }; + + csvfields = janePackage { + pname = "csvfields"; + hash = "19pnq9m9lkdgqfy9l21w779d6c8djr1dvvjq7r9kbgfwb04symmr"; + propagatedBuildInputs = [ core expect_test_helpers ]; + meta.description = "Runtime support for ppx_xml_conv and ppx_csv_conv"; + }; + + sexp_diff_kernel = janePackage { + pname = "sexp_diff_kernel"; + hash = "125gssd24vfcfbkpjlqbxijlc4jyw2n0wv1cnddcfvpn1f7cghzb"; + propagatedBuildInputs = [ core_kernel ]; + meta.description = "Code for computing the diff of two sexps"; + }; + + sexp_macro = janePackage { + pname = "sexp_macro"; + hash = "1rqs2r2ihwsqzgnqsdr0db6dqzz4q6s9hi1hvnwf0cb2vnkhsjln"; + propagatedBuildInputs = [ async sexplib ]; + meta.description = "Sexp macros"; + }; + + sexp_select = janePackage { + pname = "sexp_select"; + hash = "02yckmin937scqs2i45r2qqp56rqa6j2q04nfhnnxvn3bkb0qnb1"; + propagatedBuildInputs = [ base ppx_jane ]; + meta.description = "A library to use CSS-style selectors to traverse sexp trees"; + }; + + sexp = janePackage { + pname = "sexp"; + hash = "0cqp6syc4ap2nxgg1mvwwz2pmib48kp3gigzpjwh20wr38qq0p1r"; + propagatedBuildInputs = [ + async + core + csvfields + re2 + sexp_diff_kernel + sexp_macro + sexp_pretty + sexp_select + ]; + patches = ./sexp.patch; + meta.description = "S-expression swiss knife"; + }; + + zarith_stubs_js = janePackage { + pname = "zarith_stubs_js"; + hash = "0dldnf85rfyx8z63qjly9n8plj8nnkw4i5zrj5vbm7s2wjcfjzj1"; + meta.description = "Javascripts stubs for the Zarith library"; + }; + + bignum = janePackage { + pname = "bignum"; + hash = "0qldyl5mhlffnyps7n9y8qykm0ylrdiw5ii8zlww82zmmpp8zv5x"; + propagatedBuildInputs = [ core_kernel zarith zarith_stubs_js ]; + meta.description = "Core-flavoured wrapper around zarith's arbitrary-precision rationals"; + }; + + delimited_parsing = janePackage { + pname = "delimited_parsing"; + hash = "0siz746q28241wk0sv435lfvvips7sl151z5a1sbqanr3lm4s17w"; + propagatedBuildInputs = [ async core_extended ]; + meta.description = "Parsing of character (e.g., comma) separated and fixed-width values"; + }; + ### Packages at version 0.11, with dependencies at version 0.12 configurator = janePackage { diff --git a/pkgs/development/ocaml-modules/janestreet/ppx-core.nix b/pkgs/development/ocaml-modules/janestreet/ppx-core.nix deleted file mode 100644 index c5789ee9cfb..00000000000 --- a/pkgs/development/ocaml-modules/janestreet/ppx-core.nix +++ /dev/null @@ -1,14 +0,0 @@ -{stdenv, buildOcamlJane, ppx_tools}: - -buildOcamlJane { - name = "ppx_core"; - hash = "0df7vyai488lfkyh8szw2hvn22jsyrkfvq1b91j1s0g0y27nnfax"; - propagatedBuildInputs = - [ ppx_tools ]; - - meta = with stdenv.lib; { - description = "PPX standard library"; - maintainers = [ maintainers.maurer ]; - license = licenses.asl20; - }; -} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx-driver.nix b/pkgs/development/ocaml-modules/janestreet/ppx-driver.nix deleted file mode 100644 index b4fb9ec7602..00000000000 --- a/pkgs/development/ocaml-modules/janestreet/ppx-driver.nix +++ /dev/null @@ -1,15 +0,0 @@ -{stdenv, buildOcamlJane, - ppx_core, ppx_optcomp}: - -buildOcamlJane { - name = "ppx_driver"; - hash = "19cpfdn1n36vl5l9d6h7c61ffn0wmiipprn5by0354i5aywj8gpn"; - propagatedBuildInputs = - [ ppx_core ppx_optcomp ]; - - meta = with stdenv.lib; { - description = "A driver is an executable created from a set of OCaml AST transformers linked together with a command line frontend"; - maintainers = [ maintainers.maurer ]; - license = licenses.asl20; - }; -} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx-fail.nix b/pkgs/development/ocaml-modules/janestreet/ppx-fail.nix deleted file mode 100644 index 4f55a6c4eac..00000000000 --- a/pkgs/development/ocaml-modules/janestreet/ppx-fail.nix +++ /dev/null @@ -1,14 +0,0 @@ -{stdenv, buildOcamlJane, - ppx_core, ppx_driver, ppx_here, ppx_tools}: - -buildOcamlJane { - name = "ppx_fail"; - hash = "1ms5axpc0zg469zj4799nz3wwxi6rmmyvqj52dy03crmpj71s18l"; - propagatedBuildInputs = [ ppx_core ppx_driver ppx_here ppx_tools ]; - - meta = with stdenv.lib; { - description = "Syntax extension that makes failwith include a position"; - maintainers = [ maintainers.maurer ]; - license = licenses.asl20; - }; -} diff --git a/pkgs/development/ocaml-modules/janestreet/ppx-type-conv.nix b/pkgs/development/ocaml-modules/janestreet/ppx-type-conv.nix deleted file mode 100644 index bf36dfab5cb..00000000000 --- a/pkgs/development/ocaml-modules/janestreet/ppx-type-conv.nix +++ /dev/null @@ -1,15 +0,0 @@ -{stdenv, buildOcamlJane, - ppx_core, ppx_deriving, ppx_driver, ppx_tools}: - -buildOcamlJane { - name = "ppx_type_conv"; - hash = "0gv0mqwn97dwrfm6rj442565y8dz7kiq8s8vadnhywrl7j4znqyq"; - propagatedBuildInputs = - [ ppx_core ppx_deriving ppx_driver ppx_tools ]; - - meta = with stdenv.lib; { - description = "The type_conv library factors out functionality needed by different preprocessors that generate code from type specifications"; - maintainers = [ maintainers.maurer ]; - license = licenses.asl20; - }; -} diff --git a/pkgs/development/ocaml-modules/janestreet/sexp.patch b/pkgs/development/ocaml-modules/janestreet/sexp.patch new file mode 100644 index 00000000000..e56ce6508db --- /dev/null +++ b/pkgs/development/ocaml-modules/janestreet/sexp.patch @@ -0,0 +1,30 @@ +diff --git a/lazy_list/src/dune b/lazy_list/src/dune +index f1650ad..df90914 100644 +--- a/lazy_list/src/dune ++++ b/lazy_list/src/dune +@@ -1,2 +1,3 @@ + (library (name lazy_list) (libraries core_kernel) ++ (public_name sexp.lazy_list) + (preprocess (pps ppx_jane))) +\ No newline at end of file +diff --git a/sexp_app/pattern/dune b/sexp_app/pattern/dune +index b7d2c3b..baf136b 100644 +--- a/sexp_app/pattern/dune ++++ b/sexp_app/pattern/dune +@@ -1,4 +1,5 @@ + (library (name sexp_app_pattern) (libraries core re2 sexplib str) ++ (public_name sexp.sexp_app_pattern) + (preprocess (pps ppx_jane))) + + (ocamllex lexer) +diff --git a/sexp_app/src/dune b/sexp_app/src/dune +index b91ff40..a07a4e7 100644 +--- a/sexp_app/src/dune ++++ b/sexp_app/src/dune +@@ -1,4 +1,5 @@ + (library (name sexp_app) (libraries core lazy_list re2 sexplib str) ++ (public_name sexp.sexp_app) + (preprocess (pps ppx_jane -allow-unannotated-ignores))) + + (ocamllex csv_lexeme) +\ No newline at end of file diff --git a/pkgs/development/ocaml-modules/mirage-block/default.nix b/pkgs/development/ocaml-modules/mirage-block/default.nix new file mode 100644 index 00000000000..28eb4d6b28e --- /dev/null +++ b/pkgs/development/ocaml-modules/mirage-block/default.nix @@ -0,0 +1,24 @@ +{ lib, fetchurl, buildDunePackage +, cstruct, lwt, mirage-device +}: + +buildDunePackage rec { + pname = "mirage-block"; + version = "2.0.1"; + + useDune2 = true; + + src = fetchurl { + url = "https://github.com/mirage/mirage-block/releases/download/v${version}/mirage-block-v${version}.tbz"; + sha256 = "1wp8wmixaz9i2sbvq6nkx903lbnpdgb2w404pz1wk8kcg9p3ilcc"; + }; + + propagatedBuildInputs = [ cstruct lwt mirage-device ]; + + meta = with lib; { + description = "Block signatures and implementations for MirageOS"; + homepage = "https://github.com/mirage/mirage-block"; + license = licenses.isc; + maintainers = with maintainers; [ vbgl ]; + }; +} diff --git a/pkgs/development/ocaml-modules/mirage-bootvar-unix/default.nix b/pkgs/development/ocaml-modules/mirage-bootvar-unix/default.nix new file mode 100644 index 00000000000..9b9a1ae185e --- /dev/null +++ b/pkgs/development/ocaml-modules/mirage-bootvar-unix/default.nix @@ -0,0 +1,22 @@ +{ lib, fetchurl, buildDunePackage +, lwt, parse-argv +}: + +buildDunePackage rec { + pname = "mirage-bootvar-unix"; + version = "0.1.0"; + + src = fetchurl { + url = "https://github.com/mirage/mirage-bootvar-unix/releases/download/${version}/mirage-bootvar-unix-${version}.tbz"; + sha256 = "0r92s6y7nxg0ci330a7p0hii4if51iq0sixn20cnm5j4a2clprbf"; + }; + + propagatedBuildInputs = [ lwt parse-argv ]; + + meta = { + description = "Unix implementation of MirageOS Bootvar interface"; + homepage = "https://github.com/mirage/mirage-bootvar-unix"; + license = lib.licenses.isc; + maintainers = [ lib.maintainers.vbgl ]; + }; +} diff --git a/pkgs/development/ocaml-modules/mirage-crypto/default.nix b/pkgs/development/ocaml-modules/mirage-crypto/default.nix index e178e066a38..66da69fee22 100644 --- a/pkgs/development/ocaml-modules/mirage-crypto/default.nix +++ b/pkgs/development/ocaml-modules/mirage-crypto/default.nix @@ -4,11 +4,11 @@ buildDunePackage rec { minimumOCamlVersion = "4.08"; pname = "mirage-crypto"; - version = "0.8.5"; + version = "0.8.6"; src = fetchurl { url = "https://github.com/mirage/mirage-crypto/releases/download/v${version}/mirage-crypto-v${version}.tbz"; - sha256 = "0l6q0z5ghhy0djfscb2i2xg4dpmxs4xkwh16kc473cmb4hsxsmyk"; + sha256 = "1fghg89lpm1iks6nk1jhqcimpvb52jih0ys9bxbn2f343l0njbkq"; }; useDune2 = true; diff --git a/pkgs/development/ocaml-modules/mirage-fs/default.nix b/pkgs/development/ocaml-modules/mirage-fs/default.nix new file mode 100644 index 00000000000..d8cfddff313 --- /dev/null +++ b/pkgs/development/ocaml-modules/mirage-fs/default.nix @@ -0,0 +1,24 @@ +{ lib, fetchurl, buildDunePackage +, cstruct, fmt, lwt, mirage-device, mirage-kv +}: + +buildDunePackage rec { + pname = "mirage-fs"; + version = "3.0.1"; + + useDune2 = true; + + src = fetchurl { + url = "https://github.com/mirage/mirage-fs/releases/download/v${version}/mirage-fs-v${version}.tbz"; + sha256 = "0px18bgk528vr7iw78r0j3z4sdcz684sfcj47ibbly2adbvd64yk"; + }; + + propagatedBuildInputs = [ cstruct fmt lwt mirage-device mirage-kv ]; + + meta = { + description = "MirageOS signatures for filesystem devices"; + homepage = "https://github.com/mirage/mirage-fs"; + license = lib.licenses.isc; + maintainers = [ lib.maintainers.vbgl ]; + }; +} diff --git a/pkgs/development/ocaml-modules/mirage-kv/default.nix b/pkgs/development/ocaml-modules/mirage-kv/default.nix new file mode 100644 index 00000000000..20d83e16641 --- /dev/null +++ b/pkgs/development/ocaml-modules/mirage-kv/default.nix @@ -0,0 +1,28 @@ +{ lib, fetchurl, buildDunePackage +, fmt, mirage-device +, alcotest +}: + +buildDunePackage rec { + pname = "mirage-kv"; + version = "3.0.1"; + + useDune2 = true; + + src = fetchurl { + url = "https://github.com/mirage/mirage-kv/releases/download/v${version}/mirage-kv-v${version}.tbz"; + sha256 = "1n736sjvdd8rkbc2b5jm9sn0w6hvhjycma5328r0l03v24vk5cki"; + }; + + propagatedBuildInputs = [ fmt mirage-device ]; + + doCheck = true; + checkInputs = [ alcotest ]; + + meta = { + description = "MirageOS signatures for key/value devices"; + homepage = "https://github.com/mirage/mirage-kv"; + license = lib.licenses.isc; + maintainers = [ lib.maintainers.vbgl ]; + }; +} diff --git a/pkgs/development/ocaml-modules/mirage-net/default.nix b/pkgs/development/ocaml-modules/mirage-net/default.nix new file mode 100644 index 00000000000..a29727d7ee1 --- /dev/null +++ b/pkgs/development/ocaml-modules/mirage-net/default.nix @@ -0,0 +1,24 @@ +{ lib, fetchurl, buildDunePackage +, cstruct, fmt, lwt, macaddr, mirage-device +}: + +buildDunePackage rec { + pname = "mirage-net"; + version = "3.0.1"; + + useDune2 = true; + + src = fetchurl { + url = "https://github.com/mirage/mirage-net/releases/download/v${version}/mirage-net-v${version}.tbz"; + sha256 = "0yfvl0fgs7xy5i7kkparaa7a315a2h7kb1z24fmmnwnyaji57dg3"; + }; + + propagatedBuildInputs = [ cstruct fmt lwt macaddr mirage-device ]; + + meta = { + description = "Network signatures for MirageOS"; + homepage = "https://github.com/mirage/mirage-net"; + license = lib.licenses.isc; + maintainers = [ lib.maintainers.vbgl ]; + }; +} diff --git a/pkgs/development/ocaml-modules/mirage/runtime.nix b/pkgs/development/ocaml-modules/mirage/runtime.nix index 816e85d3c9a..b3f308979f4 100644 --- a/pkgs/development/ocaml-modules/mirage/runtime.nix +++ b/pkgs/development/ocaml-modules/mirage/runtime.nix @@ -3,13 +3,13 @@ buildDunePackage rec { pname = "mirage-runtime"; - version = "3.8.1"; + version = "3.9.0"; - minimumOCamlVersion = "4.06"; + minimumOCamlVersion = "4.08"; src = fetchurl { url = "https://github.com/mirage/mirage/releases/download/v${version}/mirage-v${version}.tbz"; - sha256 = "1sx9df041jb2rdrsibybifhml6h6kpzw9d2bw6vvv0ml500070ww"; + sha256 = "1hznh49v1jlkwww6xi9f2f4yjzlh9qfvdrrdzvddnwsh3g00flla"; }; propagatedBuildInputs = [ ipaddr functoria-runtime fmt logs ocaml_lwt ]; diff --git a/pkgs/development/ocaml-modules/mustache/default.nix b/pkgs/development/ocaml-modules/mustache/default.nix index 267aa17e9e4..005e26926d1 100644 --- a/pkgs/development/ocaml-modules/mustache/default.nix +++ b/pkgs/development/ocaml-modules/mustache/default.nix @@ -3,6 +3,7 @@ buildDunePackage rec { pname = "mustache"; version = "3.1.0"; + useDune2 = true; src = fetchFromGitHub { owner = "rgrinberg"; repo = "ocaml-mustache"; diff --git a/pkgs/development/ocaml-modules/ocsigen-start/default.nix b/pkgs/development/ocaml-modules/ocsigen-start/default.nix index 637c06e98dc..5939e616453 100644 --- a/pkgs/development/ocaml-modules/ocsigen-start/default.nix +++ b/pkgs/development/ocaml-modules/ocsigen-start/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, ocaml, findlib, ocsigen-toolkit, pgocaml_ppx, macaque, safepass, yojson +{ stdenv, fetchFromGitHub, ocaml, findlib, ocsigen-toolkit, pgocaml_ppx, safepass, yojson , cohttp-lwt-unix , resource-pooling }: @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { ''; createFindlibDestdir = true; - + src = fetchFromGitHub { owner = "ocsigen"; repo = "ocsigen-start"; diff --git a/pkgs/development/ocaml-modules/opium_kernel/default.nix b/pkgs/development/ocaml-modules/opium_kernel/default.nix index 8388e108fef..c7bfe1e7306 100644 --- a/pkgs/development/ocaml-modules/opium_kernel/default.nix +++ b/pkgs/development/ocaml-modules/opium_kernel/default.nix @@ -1,6 +1,6 @@ { lib , buildDunePackage -, fetchFromGitHub +, fetchurl , ppx_fields_conv , ppx_sexp_conv @@ -8,35 +8,36 @@ , cohttp-lwt , ezjsonm , hmap +, sexplib }: buildDunePackage rec { - pname = "opium_kernel"; - version = "0.17.1"; + pname = "opium_kernel"; + version = "0.18.0"; + + useDune2 = true; minimumOCamlVersion = "4.04.1"; - - src = fetchFromGitHub { - owner = "rgrinberg"; - repo = "opium"; - rev = "v${version}"; - sha256 = "03xzh0ik6k3c0yn1w1avph667vdagwclzimwwrlf9qdxnzxvcnp3"; - }; + + src = fetchurl { + url = "https://github.com/rgrinberg/opium/releases/download/${version}/opium-${version}.tbz"; + sha256 = "0a2y9gw55psqhqli3a5ps9mfdab8r46fnbj882r2sp366sfcy37q"; + }; doCheck = true; - buildInputs = [ + buildInputs = [ ppx_sexp_conv ppx_fields_conv ]; - propagatedBuildInputs = [ - hmap cohttp-lwt ezjsonm + propagatedBuildInputs = [ + hmap cohttp-lwt ezjsonm sexplib ]; meta = { - description = "Sinatra like web toolkit for OCaml based on cohttp & lwt"; + description = "Sinatra like web toolkit for OCaml based on cohttp & lwt"; homepage = "https://github.com/rgrinberg/opium"; - license = lib.licenses.mit; - maintainers = [ lib.maintainers.pmahoney ]; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.pmahoney ]; }; } diff --git a/pkgs/development/ocaml-modules/parse-argv/default.nix b/pkgs/development/ocaml-modules/parse-argv/default.nix new file mode 100644 index 00000000000..64cc7c0c6b7 --- /dev/null +++ b/pkgs/development/ocaml-modules/parse-argv/default.nix @@ -0,0 +1,28 @@ +{ lib, fetchurl, buildDunePackage, ocaml +, astring +, ounit +}: + +buildDunePackage rec { + pname = "parse-argv"; + version = "0.2.0"; + + minimumOCamlVersion = "4.03"; + + src = fetchurl { + url = "https://github.com/mirage/parse-argv/releases/download/v${version}/parse-argv-v${version}.tbz"; + sha256 = "06dl04fcmwpkydzni2fzwrhk0bqypd55mgxfax9v82x65xrgj5gw"; + }; + + propagatedBuildInputs = [ astring ]; + + doCheck = lib.versionAtLeast ocaml.version "4.04"; + checkInputs = [ ounit ]; + + meta = { + description = "Process strings into sets of command-line arguments"; + homepage = "https://github.com/mirage/parse-argv"; + license = lib.licenses.isc; + maintainers = [ lib.maintainers.vbgl ]; + }; +} diff --git a/pkgs/development/ocaml-modules/pgocaml/default.nix b/pkgs/development/ocaml-modules/pgocaml/default.nix index 8896675f63c..d0dcb5b489f 100644 --- a/pkgs/development/ocaml-modules/pgocaml/default.nix +++ b/pkgs/development/ocaml-modules/pgocaml/default.nix @@ -1,22 +1,21 @@ { lib, fetchFromGitHub, buildDunePackage -, calendar, csv, hex, re +, calendar, csv, hex, ppx_deriving, ppx_sexp_conv, re, rresult, sexplib }: buildDunePackage rec { pname = "pgocaml"; - version = "4.0"; + version = "4.2.2"; src = fetchFromGitHub { owner = "darioteixeira"; repo = "pgocaml"; - rev = "v${version}"; - sha256 = "1s8c5prr7jb9k76bz990m836czm6k8rv5bvp6s2zg9ra0w19w90j"; + rev = version; + sha256 = "1rdypc83nap9j2ml9r6n1pzgf79gk1yffwyi6fmcrl7zmy01cg0n"; }; - minimumOCamlVersion = "4.05"; + minimumOCamlVersion = "4.07"; + useDune2 = true; - preConfigure = "patchShebangs src/genconfig.sh"; - - propagatedBuildInputs = [ calendar csv hex re ]; + propagatedBuildInputs = [ calendar csv hex ppx_deriving ppx_sexp_conv re rresult sexplib ]; meta = with lib; { description = "An interface to PostgreSQL databases for OCaml applications"; diff --git a/pkgs/development/ocaml-modules/pgocaml/ppx.nix b/pkgs/development/ocaml-modules/pgocaml/ppx.nix index f8bc4a40e7f..35c19622f88 100644 --- a/pkgs/development/ocaml-modules/pgocaml/ppx.nix +++ b/pkgs/development/ocaml-modules/pgocaml/ppx.nix @@ -1,8 +1,8 @@ -{ buildDunePackage, pgocaml, ppx_tools, ppx_tools_versioned, rresult }: +{ buildDunePackage, pgocaml, ppx_optcomp, ppx_tools, ppx_tools_versioned, rresult }: buildDunePackage { pname = "pgocaml_ppx"; - inherit (pgocaml) src version meta; + inherit (pgocaml) src version useDune2 meta; - propagatedBuildInputs = [ pgocaml ppx_tools ppx_tools_versioned rresult ]; + propagatedBuildInputs = [ pgocaml ppx_optcomp ppx_tools ppx_tools_versioned rresult ]; } diff --git a/pkgs/development/ocaml-modules/re/default.nix b/pkgs/development/ocaml-modules/re/default.nix index 8881821490a..ca3cf1e8267 100644 --- a/pkgs/development/ocaml-modules/re/default.nix +++ b/pkgs/development/ocaml-modules/re/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchzip, buildDunePackage, ocaml, ounit, seq }: +{ lib, fetchurl, buildDunePackage, ocaml, ounit, seq }: buildDunePackage rec { pname = "re"; @@ -6,9 +6,9 @@ buildDunePackage rec { minimumOCamlVersion = "4.02"; - src = fetchzip { - url = "https://github.com/ocaml/ocaml-re/archive/${version}.tar.gz"; - sha256 = "07ycb103mr4mrkxfd63cwlsn023xvcjp0ra0k7n2gwrg0mwxmfss"; + src = fetchurl { + url = "https://github.com/ocaml/ocaml-re/releases/download/${version}/re-${version}.tbz"; + sha256 = "1gas4ky49zgxph3870nffzkr6y41kkpqp4nj38pz1gh49zcf12aj"; }; buildInputs = lib.optional doCheck ounit; diff --git a/pkgs/development/ocaml-modules/safepass/default.nix b/pkgs/development/ocaml-modules/safepass/default.nix index 884bcdebba4..04c494403be 100644 --- a/pkgs/development/ocaml-modules/safepass/default.nix +++ b/pkgs/development/ocaml-modules/safepass/default.nix @@ -1,33 +1,21 @@ -{ stdenv, fetchurl, ocaml, findlib, ocamlbuild }: +{ lib, fetchFromGitHub, buildDunePackage }: -let param = - if stdenv.lib.versionAtLeast ocaml.version "4.02" - then { - version = "2.0"; - url = "http://forge.ocamlcore.org/frs/download.php/1615/ocaml-safepass-2.0.tgz"; - sha256 = "1zxx3wcyzhxxvm5w9c21y7hpa11h67paaaz9mfsyiqk6fs6hcvmw"; - } else { - version = "1.3"; - url = "http://forge.ocamlcore.org/frs/download.php/1432/ocaml-safepass-1.3.tgz"; - sha256 = "0lb8xbpyc5d1zml7s7mmcr6y2ipwdp7qz73lkv9asy7dyi6cj15g"; +buildDunePackage rec { + pname = "safepass"; + version = "3.0"; + + src = fetchFromGitHub { + owner = "darioteixeira"; + repo = "ocaml-safepass"; + rev = "v${version}"; + sha256 = "0i127gs9x23wzwa1q3dxa2j6hby07hvxdg1c98fc3j09rg6vy2bs"; }; -in - -stdenv.mkDerivation { - name = "ocaml${ocaml.version}-safepass-${param.version}"; - src = fetchurl { - inherit (param) url sha256; - }; - - buildInputs = [ ocaml findlib ocamlbuild ]; - - createFindlibDestdir = true; meta = { - homepage = "http://ocaml-safepass.forge.ocamlcore.org/"; + inherit (src.meta) homepage; description = "An OCaml library offering facilities for the safe storage of user passwords"; - license = stdenv.lib.licenses.lgpl21; - platforms = ocaml.meta.platforms or []; - maintainers = with stdenv.lib.maintainers; [ vbgl ]; + license = lib.licenses.lgpl21; + maintainers = with lib.maintainers; [ vbgl ]; }; + } diff --git a/pkgs/development/ocaml-modules/secp256k1/default.nix b/pkgs/development/ocaml-modules/secp256k1/default.nix index ed60cb96273..aab98a9cc6b 100644 --- a/pkgs/development/ocaml-modules/secp256k1/default.nix +++ b/pkgs/development/ocaml-modules/secp256k1/default.nix @@ -1,17 +1,19 @@ -{ stdenv, fetchFromGitHub, buildDunePackage, base, stdio, configurator, secp256k1 }: +{ stdenv, fetchFromGitHub, buildDunePackage, base, stdio, dune-configurator, secp256k1 }: -buildDunePackage { +buildDunePackage rec { pname = "secp256k1"; - version = "0.4.0"; + version = "0.4.1"; + + useDune2 = true; src = fetchFromGitHub { owner = "dakk"; repo = "secp256k1-ml"; - rev = "42c04c93e2ed9596f6378676e944c8cfabfa69d7"; - sha256 = "1zw2kgg181a9lj1m8z0ybijs8gw9w1kk990avh1bp9x8kc1asffg"; + rev = version; + sha256 = "0jkd7mc5kynhg0b76dfk70pww97qsq2jbd991634i16xf8qja9fj"; }; - buildInputs = [ base stdio configurator secp256k1 ]; + buildInputs = [ base stdio dune-configurator secp256k1 ]; meta = with stdenv.lib; { homepage = "https://github.com/dakk/secp256k1-ml"; diff --git a/pkgs/development/ocaml-modules/sqlexpr/ppx.nix b/pkgs/development/ocaml-modules/sqlexpr/ppx.nix index 7cc455b0195..863bd21c90e 100644 --- a/pkgs/development/ocaml-modules/sqlexpr/ppx.nix +++ b/pkgs/development/ocaml-modules/sqlexpr/ppx.nix @@ -1,11 +1,15 @@ { buildDunePackage, sqlexpr, ounit -, ppx_core, ppx_tools_versioned, re, lwt_ppx +, ppxlib, ppx_tools_versioned, re, lwt_ppx }: buildDunePackage { pname = "ppx_sqlexpr"; inherit (sqlexpr) version src meta; - buildInputs = [ sqlexpr ounit ppx_core ppx_tools_versioned re lwt_ppx ]; + postPatch = '' + substituteInPlace src/ppx/jbuild --replace ppx_core ppxlib + ''; + + buildInputs = [ sqlexpr ounit ppxlib ppx_tools_versioned re lwt_ppx ]; doCheck = true; } diff --git a/pkgs/development/ocaml-modules/sqlite3/default.nix b/pkgs/development/ocaml-modules/sqlite3/default.nix index 2cc02abbb44..660282ad131 100644 --- a/pkgs/development/ocaml-modules/sqlite3/default.nix +++ b/pkgs/development/ocaml-modules/sqlite3/default.nix @@ -2,12 +2,12 @@ buildDunePackage rec { pname = "sqlite3"; - version = "5.0.1"; + version = "5.0.2"; minimumOCamlVersion = "4.05"; src = fetchurl { url = "https://github.com/mmottl/sqlite3-ocaml/releases/download/${version}/sqlite3-${version}.tbz"; - sha256 = "0iymkszrs6qwak0vadfzc8yd8jfwn06zl08ggb4jr2mgk2c8mmsn"; + sha256 = "0sba74n0jvzxibrclhbpqscil36yfw7i9jj9q562yhza6rax9p82"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/development/ocaml-modules/uchar/default.nix b/pkgs/development/ocaml-modules/uchar/default.nix index 819d8527b2a..fb56cca0f0a 100644 --- a/pkgs/development/ocaml-modules/uchar/default.nix +++ b/pkgs/development/ocaml-modules/uchar/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opaline, withShared ? true }: +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, opaline, withShared ? true, lib }: stdenv.mkDerivation { name = "ocaml${ocaml.version}-uchar-0.0.2"; @@ -10,7 +10,7 @@ stdenv.mkDerivation { nativeBuildInputs = [ ocaml ocamlbuild findlib ]; buildInputs = [ findlib ocaml ocamlbuild ]; - buildPhase = "ocaml pkg/build.ml native=true native-dynlink=${if withShared then "true" else "false"}"; + buildPhase = "ocaml pkg/build.ml native=true native-dynlink=${lib.boolToString withShared}"; installPhase = "${opaline}/bin/opaline -libdir $OCAMLFIND_DESTDIR"; configurePlatforms = []; diff --git a/pkgs/development/ocaml-modules/yaml/default.nix b/pkgs/development/ocaml-modules/yaml/default.nix index 31790755357..c8b2b614e86 100644 --- a/pkgs/development/ocaml-modules/yaml/default.nix +++ b/pkgs/development/ocaml-modules/yaml/default.nix @@ -1,17 +1,21 @@ { lib, fetchurl, buildDunePackage +, dune-configurator , ppx_sexp_conv , bos, ctypes, fmt, logs, rresult, sexplib }: buildDunePackage rec { pname = "yaml"; - version = "2.0.1"; + version = "2.1.0"; + + useDune2 = true; src = fetchurl { url = "https://github.com/avsm/ocaml-yaml/releases/download/v${version}/yaml-v${version}.tbz"; - sha256 = "1r8jj572h416g2zliwmxj2j9hkv73nxnpfb9gmbj9gixg24lskx0"; + sha256 = "03g8vsh5jgi1cm5q78v15slgnzifp91fp7n4v1i7pa8yk0bkh585"; }; + buildInputs = [ dune-configurator ]; propagatedBuildInputs = [ bos ctypes fmt logs ppx_sexp_conv rresult sexplib ]; meta = { diff --git a/pkgs/development/perl-modules/xml-parser-0001-HACK-Assumes-Expat-paths-are-good.patch b/pkgs/development/perl-modules/xml-parser-0001-HACK-Assumes-Expat-paths-are-good.patch index f66ed0dfe01..add6d9df3b7 100644 --- a/pkgs/development/perl-modules/xml-parser-0001-HACK-Assumes-Expat-paths-are-good.patch +++ b/pkgs/development/perl-modules/xml-parser-0001-HACK-Assumes-Expat-paths-are-good.patch @@ -16,30 +16,28 @@ diff --git a/Makefile.PL b/Makefile.PL index 505d1df..fc38b76 100644 --- a/Makefile.PL +++ b/Makefile.PL -@@ -28,12 +28,18 @@ foreach (@ARGV) { +@@ -29,12 +29,17 @@ foreach (@ARGV) { @ARGV = @replacement_args; unless ( -- check_lib( # fill in what you prompted the user for here -- lib => [qw(expat)], -- header => ['expat.h'], -- incpath => $expat_incpath, -- ($expat_libpath? -- (libpath => $expat_libpath):()), -- )) { -+ #check_lib( # fill in what you prompted the user for here -+ # lib => [qw(expat)], -+ # header => ['expat.h'], -+ # incpath => $expat_incpath, -+ # ($expat_libpath? -+ # (libpath => $expat_libpath):()), -+ #) -+ # The check_lib implementation fails horribly with cross-compilation. -+ # We are giving known good paths to expat. -+ # And in all cases, the previous behaviour of not actually failing -+ # seemed to work just fine :/. -+ false -+ ) { +- check_lib( # fill in what you prompted the user for here +- lib => [qw(expat)], +- header => ['expat.h'], +- incpath => $expat_incpath, +- ( $expat_libpath ? ( libpath => $expat_libpath ) : () ), +- ) ++ #check_lib( # fill in what you prompted the user for here ++ # lib => [qw(expat)], ++ # header => ['expat.h'], ++ # incpath => $expat_incpath, ++ # ( $expat_libpath ? ( libpath => $expat_libpath ) : () ), ++ #) ++ # The check_lib implementation fails horribly with cross-compilation. ++ # We are giving known good paths to expat. ++ # And in all cases, the previous behaviour of not actually failing ++ # seemed to work just fine :/. ++ false + ) { warn <<'Expat_Not_Installed;'; -- diff --git a/pkgs/development/pharo/launcher/default.nix b/pkgs/development/pharo/launcher/default.nix index 5f6deca863c..1737fb90c7a 100644 --- a/pkgs/development/pharo/launcher/default.nix +++ b/pkgs/development/pharo/launcher/default.nix @@ -55,10 +55,10 @@ stdenv.mkDerivation rec { test "$?" == 124 && echo "ok") ''; - meta = { + meta = with stdenv.lib; { description = "Launcher for Pharo distributions"; + homepage = "https://pharo.org"; longDescription = '' - Pharo's goal is to deliver a clean, innovative, free open-source Smalltalk-inspired environment. By providing a stable and small core system, excellent dev tools, and maintained releases, Pharo @@ -75,8 +75,7 @@ stdenv.mkDerivation rec { access it very rapidly from your OS application launcher. As a result, launching any image is never more than 3 clicks away. ''; - homepage = "http://pharo.org"; - license = stdenv.lib.licenses.mit; + license = licenses.mit; maintainers = [ ]; platforms = pharo.meta.platforms; }; diff --git a/pkgs/development/pharo/vm/build-vm-legacy.nix b/pkgs/development/pharo/vm/build-vm-legacy.nix index fd6312c7b27..13db30eae90 100644 --- a/pkgs/development/pharo/vm/build-vm-legacy.nix +++ b/pkgs/development/pharo/vm/build-vm-legacy.nix @@ -1,4 +1,20 @@ -{ stdenv, fetchurl, cmake, bash, unzip, glibc, openssl, gcc, libGLU, libGL, freetype, xorg, alsaLib, cairo, libuuid, makeWrapper, ... }: +{ stdenv +, fetchurl +, cmake +, bash +, unzip +, glibc +, openssl +, gcc +, libGLU +, libGL +, freetype +, xorg +, alsaLib +, cairo +, libuuid +, makeWrapper +, ... }: { name, src, ... }: @@ -10,7 +26,15 @@ stdenv.mkDerivation rec { hardeningDisable = [ "format" "pic" ]; - # Building + nativeBuildInputs = [ unzip cmake gcc makeWrapper ]; + + buildInputs = [ bash glibc openssl libGLU libGL freetype + xorg.libX11 xorg.libICE xorg.libSM alsaLib cairo pharo-share ]; + + LD_LIBRARY_PATH = stdenv.lib.makeLibraryPath + [ cairo libGLU libGL freetype openssl libuuid alsaLib + xorg.libICE xorg.libSM ]; + preConfigure = '' cd build/ ''; @@ -46,12 +70,9 @@ stdenv.mkDerivation rec { ln -s "${pharo-share}/lib/"*.sources $prefix/lib/$name ''; - LD_LIBRARY_PATH = stdenv.lib.makeLibraryPath [ cairo libGLU libGL freetype openssl libuuid alsaLib xorg.libICE xorg.libSM ]; - nativeBuildInputs = [ unzip cmake gcc makeWrapper ]; - buildInputs = [ bash glibc openssl libGLU libGL freetype xorg.libX11 xorg.libICE xorg.libSM alsaLib cairo pharo-share ]; - - meta = { + meta = with stdenv.lib; { description = "Clean and innovative Smalltalk-inspired environment"; + homepage = "https://pharo.org"; longDescription = '' Pharo's goal is to deliver a clean, innovative, free open-source Smalltalk-inspired environment. By providing a stable and small core @@ -65,9 +86,8 @@ stdenv.mkDerivation rec { Please fill bug reports on http://bugs.pharo.org under the 'Ubuntu packaging (ppa:pharo/stable)' project. ''; - homepage = "http://pharo.org"; - license = stdenv.lib.licenses.mit; - maintainers = [ stdenv.lib.maintainers.lukego ]; + license = licenses.mit; + maintainers = [ maintainers.lukego ]; # Pharo VM sources are packaged separately for darwin (OS X) platforms = stdenv.lib.filter (system: with stdenv.lib.systems.elaborate { inherit system; }; diff --git a/pkgs/development/pharo/vm/build-vm.nix b/pkgs/development/pharo/vm/build-vm.nix index 4bc60dde410..d5469233f38 100644 --- a/pkgs/development/pharo/vm/build-vm.nix +++ b/pkgs/development/pharo/vm/build-vm.nix @@ -46,6 +46,33 @@ stdenv.mkDerivation rec { # while the VM depends on <= gcc48: "stackprotector" ]; + # gcc 4.8 used for the build: + # + # gcc5 crashes during compilation; gcc >= 4.9 produces a + # binary that crashes when forking a child process. See: + # http://forum.world.st/OSProcess-fork-issue-with-Debian-built-VM-td4947326.html + # + # (stack protection is disabled above for gcc 4.8 compatibility.) + nativeBuildInputs = [ autoreconfHook ]; + buildInputs = [ + bash + unzip + glibc + openssl + gcc48 + libGLU libGL + freetype + xorg.libX11 + xorg.libICE + xorg.libSM + alsaLib + cairo + pharo-share + libuuid + ]; + + enableParallelBuilding = true; + # Regenerate the configure script. # Unnecessary? But the build breaks without this. autoreconfPhase = '' @@ -123,35 +150,9 @@ stdenv.mkDerivation rec { ln -s ${libgit2}/lib/libgit2.so* "$out/" ''; - enableParallelBuilding = true; - - # gcc 4.8 used for the build: - # - # gcc5 crashes during compilation; gcc >= 4.9 produces a - # binary that crashes when forking a child process. See: - # http://forum.world.st/OSProcess-fork-issue-with-Debian-built-VM-td4947326.html - # - # (stack protection is disabled above for gcc 4.8 compatibility.) - nativeBuildInputs = [ autoreconfHook ]; - buildInputs = [ - bash - unzip - glibc - openssl - gcc48 - libGLU libGL - freetype - xorg.libX11 - xorg.libICE - xorg.libSM - alsaLib - cairo - pharo-share - libuuid - ]; - meta = with stdenv.lib; { description = "Clean and innovative Smalltalk-inspired environment"; + homepage = "https://pharo.org"; longDescription = '' Pharo's goal is to deliver a clean, innovative, free open-source Smalltalk-inspired environment. By providing a stable and small core @@ -165,7 +166,6 @@ stdenv.mkDerivation rec { Please fill bug reports on http://bugs.pharo.org under the 'Ubuntu packaging (ppa:pharo/stable)' project. ''; - homepage = "http://pharo.org"; license = licenses.mit; maintainers = [ maintainers.lukego ]; platforms = [ "i686-linux" "x86_64-linux" ]; diff --git a/pkgs/development/pharo/vm/share.nix b/pkgs/development/pharo/vm/share.nix index ee7a0494ede..2c8c376b7c1 100644 --- a/pkgs/development/pharo/vm/share.nix +++ b/pkgs/development/pharo/vm/share.nix @@ -51,7 +51,7 @@ stdenv.mkDerivation rec { meta = { description = "Shared files for Pharo"; - homepage = "http://pharo.org"; + homepage = "https://pharo.org"; license = stdenv.lib.licenses.mit; maintainers = [ ]; }; diff --git a/pkgs/development/php-packages/apcu/default.nix b/pkgs/development/php-packages/apcu/default.nix new file mode 100644 index 00000000000..04b611fd598 --- /dev/null +++ b/pkgs/development/php-packages/apcu/default.nix @@ -0,0 +1,17 @@ +{ buildPecl, lib, pcre' }: + +buildPecl { + pname = "apcu"; + + version = "5.1.19"; + sha256 = "1q3c4y9jqh1yz5vps2iiz2x04vn0y1g5ibxg1x8zp7n7sncvqzw3"; + + buildInputs = [ pcre' ]; + doCheck = true; + checkTarget = "test"; + checkFlagsArray = [ "REPORT_EXIT_STATUS=1" "NO_INTERACTION=1" ]; + makeFlags = [ "phpincludedir=$(dev)/include" ]; + outputs = [ "out" "dev" ]; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/apcu_bc/default.nix b/pkgs/development/php-packages/apcu_bc/default.nix new file mode 100644 index 00000000000..132a25a2df4 --- /dev/null +++ b/pkgs/development/php-packages/apcu_bc/default.nix @@ -0,0 +1,18 @@ +{ buildPecl, lib, pcre', php }: + +buildPecl { + pname = "apcu_bc"; + + version = "1.0.5"; + sha256 = "0ma00syhk2ps9k9p02jz7rii6x3i2p986il23703zz5npd6y9n20"; + + peclDeps = [ php.extensions.apcu ]; + + buildInputs = [ pcre' ]; + + postInstall = '' + mv $out/lib/php/extensions/apc.so $out/lib/php/extensions/apcu_bc.so + ''; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/ast/default.nix b/pkgs/development/php-packages/ast/default.nix new file mode 100644 index 00000000000..fb609b9f04f --- /dev/null +++ b/pkgs/development/php-packages/ast/default.nix @@ -0,0 +1,10 @@ +{ buildPecl, lib }: + +buildPecl { + pname = "ast"; + + version = "1.0.10"; + sha256 = "13s5r1szd80g1mqickghdd38mvjkwss221322mmbrykcfgp4fs30"; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/composer/2.0.nix b/pkgs/development/php-packages/composer/2.0.nix index ac9fd527191..8321681de5a 100644 --- a/pkgs/development/php-packages/composer/2.0.nix +++ b/pkgs/development/php-packages/composer/2.0.nix @@ -1,14 +1,14 @@ { mkDerivation, fetchurl, pkgs, lib, php }: let pname = "composer"; - version = "2.0.0-RC1"; + version = "2.0.0"; in mkDerivation { inherit pname version; src = fetchurl { url = "https://getcomposer.org/download/${version}/composer.phar"; - sha256 = "0wzr360gaa59cbjpa3vw9yrpc55a4fmdv68q0rn7vj0mjnz60fhd"; + sha256 = "11fjplbrscnw0fs5hmw4bmszg5a87ig189175407i1ip5fm5g5hk"; }; dontUnpack = true; diff --git a/pkgs/development/php-packages/composer/default.nix b/pkgs/development/php-packages/composer/default.nix index 4f6cbe4c7d3..37c983507ce 100644 --- a/pkgs/development/php-packages/composer/default.nix +++ b/pkgs/development/php-packages/composer/default.nix @@ -1,14 +1,14 @@ { mkDerivation, fetchurl, pkgs, lib, php }: let pname = "composer"; - version = "1.10.13"; + version = "1.10.15"; in mkDerivation { inherit pname version; src = fetchurl { url = "https://getcomposer.org/download/${version}/composer.phar"; - sha256 = "13vhfdlkmpvmk1h30f1i688xk7sdgfj0b82am32jgpa8zmf499sw"; + sha256 = "1shsxsrc2kq74s1jbq3njn9wzidcz7ak66n9vyz8z8d0hqpg37d6"; }; dontUnpack = true; diff --git a/pkgs/development/php-packages/couchbase/default.nix b/pkgs/development/php-packages/couchbase/default.nix new file mode 100644 index 00000000000..abe4b7efdea --- /dev/null +++ b/pkgs/development/php-packages/couchbase/default.nix @@ -0,0 +1,48 @@ +{ buildPecl, lib, pkgs, php }: +let + pname = "couchbase"; + version = "2.6.2"; +in +buildPecl { + inherit pname version; + + src = pkgs.fetchFromGitHub { + owner = "couchbase"; + repo = "php-couchbase"; + rev = "v${version}"; + sha256 = "0ymrymnz91qg9b2ns044qg46wc65dffhxx402wpx1b5cj2vr4ma3"; + }; + + configureFlags = [ "--with-couchbase" ]; + + buildInputs = with pkgs; [ libcouchbase zlib ]; + internalDeps = [ php.extensions.json ]; + peclDeps = [ php.extensions.igbinary ]; + + patches = [ + (pkgs.writeText "php-couchbase.patch" '' + --- a/config.m4 + +++ b/config.m4 + @@ -9,7 +9,7 @@ if test "$PHP_COUCHBASE" != "no"; then + LIBCOUCHBASE_DIR=$PHP_COUCHBASE + else + AC_MSG_CHECKING(for libcouchbase in default path) + - for i in /usr/local /usr; do + + for i in ${pkgs.libcouchbase}; do + if test -r $i/include/libcouchbase/couchbase.h; then + LIBCOUCHBASE_DIR=$i + AC_MSG_RESULT(found in $i) + @@ -154,6 +154,8 @@ COUCHBASE_FILES=" \ + igbinary_inc_path="$phpincludedir" + elif test -f "$phpincludedir/ext/igbinary/igbinary.h"; then + igbinary_inc_path="$phpincludedir" + + elif test -f "${php.extensions.igbinary.dev}/include/ext/igbinary/igbinary.h"; then + + igbinary_inc_path="${php.extensions.igbinary.dev}/include" + fi + if test "$igbinary_inc_path" = ""; then + AC_MSG_WARN([Cannot find igbinary.h]) + '') + ]; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/event/default.nix b/pkgs/development/php-packages/event/default.nix new file mode 100644 index 00000000000..47b99234fac --- /dev/null +++ b/pkgs/development/php-packages/event/default.nix @@ -0,0 +1,34 @@ +{ buildPecl, lib, pkgs, php }: +buildPecl { + pname = "event"; + + version = "2.5.7"; + sha256 = "0jkzcm5mmbg101jc7p3aws9qb6l6xbxkfff82mrf7s5fn7xd44im"; + + configureFlags = [ + "--with-event-libevent-dir=${pkgs.libevent.dev}" + "--with-event-core" + "--with-event-extra" + "--with-event-pthreads" + ]; + + postPhpize = '' + substituteInPlace configure --replace \ + 'as_fn_error $? "Couldn'\'''t find $phpincludedir/sockets/php_sockets.h. Please check if sockets extension installed" "$LINENO" 5' \ + ':' + ''; + + nativeBuildInputs = [ pkgs.pkgconfig ]; + buildInputs = with pkgs; [ openssl libevent ]; + internalDeps = [ php.extensions.sockets ]; + + meta = with pkgs.lib; { + description = '' + This is an extension to efficiently schedule I/O, time and signal based + events using the best I/O notification mechanism available for specific platform. + ''; + license = licenses.php301; + homepage = "https://bitbucket.org/osmanov/pecl-event/"; + maintainers = teams.php.members; + }; +} diff --git a/pkgs/development/php-packages/igbinary/default.nix b/pkgs/development/php-packages/igbinary/default.nix new file mode 100644 index 00000000000..442311a5281 --- /dev/null +++ b/pkgs/development/php-packages/igbinary/default.nix @@ -0,0 +1,14 @@ +{ buildPecl, lib }: + +buildPecl { + pname = "igbinary"; + + version = "3.1.6"; + sha256 = "1spx6581ly2r8pn9b632bi8429sy762v04ramrlnf7469pf8ggxr"; + + configureFlags = [ "--enable-igbinary" ]; + makeFlags = [ "phpincludedir=$(dev)/include" ]; + outputs = [ "out" "dev" ]; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/imagick/default.nix b/pkgs/development/php-packages/imagick/default.nix new file mode 100644 index 00000000000..63524fb2d06 --- /dev/null +++ b/pkgs/development/php-packages/imagick/default.nix @@ -0,0 +1,14 @@ +{ buildPecl, lib, pkgs, pcre' }: + +buildPecl { + pname = "imagick"; + + version = "3.4.4"; + sha256 = "0xvhaqny1v796ywx83w7jyjyd0nrxkxf34w9zi8qc8aw8qbammcd"; + + configureFlags = [ "--with-imagick=${pkgs.imagemagick.dev}" ]; + nativeBuildInputs = [ pkgs.pkgconfig ]; + buildInputs = [ pcre' ]; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/mailparse/default.nix b/pkgs/development/php-packages/mailparse/default.nix new file mode 100644 index 00000000000..820bbbdbad6 --- /dev/null +++ b/pkgs/development/php-packages/mailparse/default.nix @@ -0,0 +1,15 @@ +{ buildPecl, lib, php }: + +buildPecl { + pname = "mailparse"; + + version = "3.1.1"; + sha256 = "02nfjbgyjbr48rw6r46gd713hkxh7nghg2rcbr726zhzz182c3y7"; + + internalDeps = [ php.extensions.mbstring ]; + postConfigure = '' + echo "#define HAVE_MBSTRING 1" >> config.h + ''; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/maxminddb/default.nix b/pkgs/development/php-packages/maxminddb/default.nix new file mode 100644 index 00000000000..9244bcbc109 --- /dev/null +++ b/pkgs/development/php-packages/maxminddb/default.nix @@ -0,0 +1,24 @@ +{ buildPecl, lib, pkgs }: +let + pname = "maxminddb"; + version = "1.8.0"; +in +buildPecl { + inherit pname version; + + src = pkgs.fetchFromGitHub { + owner = "maxmind"; + repo = "MaxMind-DB-Reader-php"; + rev = "v${version}"; + sha256 = "0cpd8d1xnkxsrf28z25xzgkkf3wc13ia99v8f7hbl7csvnggs7nn"; + }; + + buildInputs = [ pkgs.libmaxminddb ]; + sourceRoot = "source/ext"; + + meta = with pkgs.lib; { + description = "C extension that is a drop-in replacement for MaxMind\\Db\\Reader"; + license = with licenses; [ asl20 ]; + maintainers = with maintainers; [ ajs124 das_j ] ++ teams.php.members; + }; +} diff --git a/pkgs/development/php-packages/memcached/default.nix b/pkgs/development/php-packages/memcached/default.nix new file mode 100644 index 00000000000..b2d9333f294 --- /dev/null +++ b/pkgs/development/php-packages/memcached/default.nix @@ -0,0 +1,30 @@ +{ buildPecl, lib, fetchgit, php, pkgs }: +let + pname = "memcached"; + version = "3.1.5"; +in +buildPecl { + inherit pname version; + + src = fetchgit { + url = "https://github.com/php-memcached-dev/php-memcached"; + rev = "v${version}"; + sha256 = "01mbh2m3kfbdvih3c8g3g9h4vdd80r0i9g2z8b3lx3mi8mmcj380"; + }; + + internalDeps = [ + php.extensions.session + ] ++ lib.optionals (lib.versionOlder php.version "7.4") [ + php.extensions.hash + ]; + + configureFlags = [ + "--with-zlib-dir=${pkgs.zlib.dev}" + "--with-libmemcached-dir=${pkgs.libmemcached}" + ]; + + nativeBuildInputs = [ pkgs.pkgconfig ]; + buildInputs = with pkgs; [ cyrus_sasl zlib ]; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/mongodb/default.nix b/pkgs/development/php-packages/mongodb/default.nix new file mode 100644 index 00000000000..9802242e5b6 --- /dev/null +++ b/pkgs/development/php-packages/mongodb/default.nix @@ -0,0 +1,20 @@ +{ buildPecl, lib, pkgs, pcre' }: + +buildPecl { + pname = "mongodb"; + + version = "1.8.1"; + sha256 = "0xxrll17c7nz146g9gww4cg41xc3qg41n73syb06546q9skqabyl"; + + nativeBuildInputs = [ pkgs.pkgconfig ]; + buildInputs = with pkgs; [ + cyrus_sasl + icu64 + openssl + snappy + zlib + pcre' + ] ++ lib.optional (pkgs.stdenv.isDarwin) pkgs.darwin.apple_sdk.frameworks.Security; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/oci8/default.nix b/pkgs/development/php-packages/oci8/default.nix new file mode 100644 index 00000000000..ea699c2034e --- /dev/null +++ b/pkgs/development/php-packages/oci8/default.nix @@ -0,0 +1,17 @@ +{ buildPecl, lib, pkgs }: + +buildPecl { + pname = "oci8"; + + version = "2.2.0"; + sha256 = "0jhivxj1nkkza4h23z33y7xhffii60d7dr51h1czjk10qywl7pyd"; + + buildInputs = [ pkgs.oracle-instantclient ]; + configureFlags = [ "--with-oci8=shared,instantclient,${pkgs.oracle-instantclient.lib}/lib" ]; + + postPatch = '' + sed -i -e 's|OCISDKMANINC=`.*$|OCISDKMANINC="${pkgs.oracle-instantclient.dev}/include"|' config.m4 + ''; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/pcov/default.nix b/pkgs/development/php-packages/pcov/default.nix new file mode 100644 index 00000000000..84fbc4f7a46 --- /dev/null +++ b/pkgs/development/php-packages/pcov/default.nix @@ -0,0 +1,12 @@ +{ buildPecl, lib, pcre' }: + +buildPecl { + pname = "pcov"; + + version = "1.0.6"; + sha256 = "1psfwscrc025z8mziq69pcx60k4fbkqa5g2ia8lplb94mmarj0v1"; + + buildInputs = [ pcre' ]; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/pdo_sqlsrv/default.nix b/pkgs/development/php-packages/pdo_sqlsrv/default.nix new file mode 100644 index 00000000000..46da3024809 --- /dev/null +++ b/pkgs/development/php-packages/pdo_sqlsrv/default.nix @@ -0,0 +1,14 @@ +{ buildPecl, lib, pkgs, php }: + +buildPecl { + pname = "pdo_sqlsrv"; + + version = "5.8.1"; + sha256 = "06ba4x34fgs092qq9w62y2afsm1nyasqiprirk4951ax9v5vcir0"; + + internalDeps = [ php.extensions.pdo ]; + + buildInputs = [ pkgs.unixODBC ] ++ pkgs.lib.optionals pkgs.stdenv.isDarwin [ pkgs.libiconv ]; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/php_excel/default.nix b/pkgs/development/php-packages/php_excel/default.nix new file mode 100644 index 00000000000..ab6d193fcd4 --- /dev/null +++ b/pkgs/development/php-packages/php_excel/default.nix @@ -0,0 +1,24 @@ +{ buildPecl, fetchurl, lib, pkgs }: +let + pname = "php_excel"; + phpVersion = "php7"; + version = "1.0.2"; +in +buildPecl { + inherit pname version; + + src = fetchurl { + url = "https://github.com/iliaal/php_excel/releases/download/Excel-1.0.2-PHP7/excel-${version}-${phpVersion}.tgz"; + sha256 = "0dpvih9gpiyh1ml22zi7hi6kslkilzby00z1p8x248idylldzs2n"; + }; + + buildInputs = with pkgs; [ libxl ]; + + configureFlags = [ + "--with-excel" + "--with-libxl-incdir=${pkgs.libxl}/include_c" + "--with-libxl-libdir=${pkgs.libxl}/lib" + ]; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/phpcbf/default.nix b/pkgs/development/php-packages/phpcbf/default.nix index 265c33b4ea0..b58ba42a5d0 100644 --- a/pkgs/development/php-packages/phpcbf/default.nix +++ b/pkgs/development/php-packages/phpcbf/default.nix @@ -1,14 +1,14 @@ { mkDerivation, fetchurl, pkgs, lib, php }: let pname = "phpcbf"; - version = "3.5.5"; + version = "3.5.8"; in mkDerivation { inherit pname version; src = fetchurl { url = "https://github.com/squizlabs/PHP_CodeSniffer/releases/download/${version}/phpcbf.phar"; - sha256 = "0hgagn70gl46migm6zpwcr39dxal07f5cdpnasrafgz5vq0gwr3g"; + sha256 = "15ci30yvw3p9zlmzsk9s4mxzb3wax3gl9p55slhf1bzwn1xxwyb0"; }; phases = [ "installPhase" ]; diff --git a/pkgs/development/php-packages/phpcs/default.nix b/pkgs/development/php-packages/phpcs/default.nix index 9b3d8c2bd19..0e8557c04eb 100644 --- a/pkgs/development/php-packages/phpcs/default.nix +++ b/pkgs/development/php-packages/phpcs/default.nix @@ -1,14 +1,14 @@ { mkDerivation, fetchurl, pkgs, lib, php }: let pname = "phpcs"; - version = "3.5.5"; + version = "3.5.8"; in mkDerivation { inherit pname version; src = fetchurl { url = "https://github.com/squizlabs/PHP_CodeSniffer/releases/download/${version}/phpcs.phar"; - sha256 = "0jl038l55cmzn5ml61qkv4z1w4ri0h3v7h00pcb04xhz3gznlbsa"; + sha256 = "037mdnpbgd9xaj556pf14h02a4a6f5zzdg58p2z1sivxcygf8aka"; }; phases = [ "installPhase" ]; diff --git a/pkgs/development/php-packages/phpmd/default.nix b/pkgs/development/php-packages/phpmd/default.nix index ffdb877d76e..fd7390498ba 100644 --- a/pkgs/development/php-packages/phpmd/default.nix +++ b/pkgs/development/php-packages/phpmd/default.nix @@ -1,7 +1,9 @@ -{ mkDerivation, fetchurl, pkgs, lib, php, isPhp74 }: +{ mkDerivation, fetchurl, pkgs, lib, php }: let pname = "phpmd"; version = "2.8.2"; + + isPhp74 = lib.versionAtLeast php.version "7.4"; in mkDerivation { inherit pname version; diff --git a/pkgs/development/php-packages/phpstan/default.nix b/pkgs/development/php-packages/phpstan/default.nix index 2e4b55a58f9..ef17aa9f98f 100644 --- a/pkgs/development/php-packages/phpstan/default.nix +++ b/pkgs/development/php-packages/phpstan/default.nix @@ -1,14 +1,14 @@ { mkDerivation, fetchurl, pkgs, lib, php }: let pname = "phpstan"; - version = "0.12.48"; + version = "0.12.51"; in mkDerivation { inherit pname version; src = pkgs.fetchurl { url = "https://github.com/phpstan/phpstan/releases/download/${version}/phpstan.phar"; - sha256 = "170yzz23lyipyckv8y2x9masv5qdmbskwwlbfc8750xb3g2q7pzl"; + sha256 = "0pfy14c0r64hdzlq5x1w225za2566s8vhh4hnfasmfh52s7v77p4"; }; phases = [ "installPhase" ]; diff --git a/pkgs/development/php-packages/pinba/default.nix b/pkgs/development/php-packages/pinba/default.nix new file mode 100644 index 00000000000..0880c2a46e2 --- /dev/null +++ b/pkgs/development/php-packages/pinba/default.nix @@ -0,0 +1,32 @@ +{ buildPecl, lib, fetchFromGitHub, php }: +let + pname = "pinba"; + + isPhp73 = lib.versionAtLeast php.version "7.3"; + + version = if isPhp73 then "1.1.2-dev" else "1.1.1"; + + src = fetchFromGitHub ({ + owner = "tony2001"; + repo = "pinba_extension"; + } // (if (isPhp73) then { + rev = "edbc313f1b4fb8407bf7d5acf63fbb0359c7fb2e"; + sha256 = "02sljqm6griw8ccqavl23f7w1hp2zflcv24lpf00k6pyrn9cwx80"; + } else { + rev = "RELEASE_1_1_1"; + sha256 = "1kdp7vav0y315695vhm3xifgsh6h6y6pny70xw3iai461n58khj5"; + })); +in +buildPecl { + inherit pname version src; + + meta = with lib; { + description = "PHP extension for Pinba"; + longDescription = '' + Pinba is a MySQL storage engine that acts as a realtime monitoring and + statistics server for PHP using MySQL as a read-only interface. + ''; + homepage = "http://pinba.org/"; + maintainers = teams.php.members; + }; +} diff --git a/pkgs/development/php-packages/protobuf/default.nix b/pkgs/development/php-packages/protobuf/default.nix new file mode 100644 index 00000000000..f5f0d7ac3ec --- /dev/null +++ b/pkgs/development/php-packages/protobuf/default.nix @@ -0,0 +1,19 @@ +{ buildPecl, lib, pcre' }: + +buildPecl { + pname = "protobuf"; + + version = "3.13.0.1"; + sha256 = "0vzxwisa8g3xgzcwa5b6cx6nyf41gkm71rxiisnnz1axz4q0hzqf"; + + buildInputs = [ pcre' ]; + + meta = with lib; { + description = '' + Google's language-neutral, platform-neutral, extensible mechanism for serializing structured data. + ''; + license = licenses.bsd3; + homepage = "https://developers.google.com/protocol-buffers/"; + maintainers = teams.php.members; + }; +} diff --git a/pkgs/development/php-packages/psysh/default.nix b/pkgs/development/php-packages/psysh/default.nix index f871bbb5baa..4c5f703d025 100644 --- a/pkgs/development/php-packages/psysh/default.nix +++ b/pkgs/development/php-packages/psysh/default.nix @@ -1,14 +1,14 @@ { mkDerivation, fetchurl, pkgs, lib, php }: let pname = "psysh"; - version = "0.10.3"; + version = "0.10.4"; in mkDerivation { inherit pname version; src = fetchurl { url = "https://github.com/bobthecow/psysh/releases/download/v${version}/psysh-v${version}.tar.gz"; - sha256 = "0glply451fy0g7zbasyp350qvmk2aglrlcrcdd7w0igylgwfkg71"; + sha256 = "005xh5rz12bsy9yvzzr69zpr0p7v4sh6cafhpinpfrvbwfq068f1"; }; phases = [ "installPhase" ]; diff --git a/pkgs/development/php-packages/pthreads/default.nix b/pkgs/development/php-packages/pthreads/default.nix new file mode 100644 index 00000000000..31b32e82967 --- /dev/null +++ b/pkgs/development/php-packages/pthreads/default.nix @@ -0,0 +1,28 @@ +{ buildPecl, lib, fetchFromGitHub, php, pcre' }: +let + pname = "pthreads"; + + isPhp73 = lib.versionAtLeast php.version "7.3"; + isPhp74 = lib.versionAtLeast php.version "7.4"; + + version = if isPhp73 then "3.2.0-dev" else "3.2.0"; + + src = fetchFromGitHub ({ + owner = "krakjoe"; + repo = "pthreads"; + } // (if (isPhp73) then { + rev = "4d1c2483ceb459ea4284db4eb06646d5715e7154"; + sha256 = "07kdxypy0bgggrfav2h1ccbv67lllbvpa3s3zsaqci0gq4fyi830"; + } else { + rev = "v3.2.0"; + sha256 = "17hypm75d4w7lvz96jb7s0s87018yzmmap0l125d5fd7abnhzfvv"; + })); +in +buildPecl { + inherit pname version src; + + buildInputs = [ pcre'.dev ]; + + meta.broken = isPhp74; + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/rdkafka/default.nix b/pkgs/development/php-packages/rdkafka/default.nix new file mode 100644 index 00000000000..98944d3bab6 --- /dev/null +++ b/pkgs/development/php-packages/rdkafka/default.nix @@ -0,0 +1,21 @@ +{ buildPecl, lib, pkgs, pcre' }: + +buildPecl { + pname = "rdkafka"; + + version = "4.0.4"; + sha256 = "18a8p43i2g93fv7qzvk2hk66z5iv0mk1rqn097x49bjigliv60mn"; + + buildInputs = [ pkgs.rdkafka pcre' ]; + + postPhpize = '' + substituteInPlace configure \ + --replace 'SEARCH_PATH="/usr/local /usr"' 'SEARCH_PATH=${pkgs.rdkafka}' + ''; + + meta = with lib; { + description = "Kafka client based on librdkafka"; + homepage = "https://github.com/arnaud-lb/php-rdkafka"; + maintainers = teams.php.members; + }; +} diff --git a/pkgs/development/php-packages/redis/default.nix b/pkgs/development/php-packages/redis/default.nix new file mode 100644 index 00000000000..41ff8f38689 --- /dev/null +++ b/pkgs/development/php-packages/redis/default.nix @@ -0,0 +1,17 @@ +{ buildPecl, lib, php }: + +buildPecl { + pname = "redis"; + + version = "5.3.2"; + sha256 = "1cfsbxf3q3im0cmalgk76jpz581zr92z03c1viy93jxb53k2vsgl"; + + internalDeps = with php.extensions; [ + json + session + ] ++ lib.optionals (lib.versionOlder php.version "7.4") [ + hash + ]; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/sqlsrv/default.nix b/pkgs/development/php-packages/sqlsrv/default.nix new file mode 100644 index 00000000000..341152277ca --- /dev/null +++ b/pkgs/development/php-packages/sqlsrv/default.nix @@ -0,0 +1,16 @@ +{ buildPecl, lib, pkgs }: + +buildPecl { + pname = "sqlsrv"; + + version = "5.8.1"; + sha256 = "0c9a6ghch2537vi0274vx0mn6nb1xg2qv7nprnf3xdfqi5ww1i9r"; + + buildInputs = [ + pkgs.unixODBC + ] ++ pkgs.lib.optionals pkgs.stdenv.isDarwin [ + pkgs.libiconv + ]; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/xdebug/default.nix b/pkgs/development/php-packages/xdebug/default.nix new file mode 100644 index 00000000000..76a55f70f0b --- /dev/null +++ b/pkgs/development/php-packages/xdebug/default.nix @@ -0,0 +1,15 @@ +{ buildPecl, lib }: + +buildPecl { + pname = "xdebug"; + + version = "2.9.8"; + sha256 = "12igfrdfisqfmfqpc321g93pm2w1y7h24bclmxjrjv6rb36bcmgm"; + + doCheck = true; + checkTarget = "test"; + + zendExtension = true; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/php-packages/yaml/default.nix b/pkgs/development/php-packages/yaml/default.nix new file mode 100644 index 00000000000..603fd3ddd5b --- /dev/null +++ b/pkgs/development/php-packages/yaml/default.nix @@ -0,0 +1,14 @@ +{ buildPecl, lib, pkgs }: + +buildPecl { + pname = "yaml"; + + version = "2.1.0"; + sha256 = "0rmn2irzny24ivzc09ss46s2s48i0zy2cww7ikphljqbfx6zdjss"; + + configureFlags = [ "--with-yaml=${pkgs.libyaml}" ]; + + nativeBuildInputs = [ pkgs.pkgconfig ]; + + meta.maintainers = lib.teams.php.members; +} diff --git a/pkgs/development/python-modules/Mako/default.nix b/pkgs/development/python-modules/Mako/default.nix index 375a0296864..c129e411a47 100644 --- a/pkgs/development/python-modules/Mako/default.nix +++ b/pkgs/development/python-modules/Mako/default.nix @@ -1,11 +1,10 @@ { lib , buildPythonPackage , fetchPypi -, python -, markupsafe -, nose -, mock , isPyPy +, markupsafe +, mock +, pytestCheckHook }: buildPythonPackage rec { @@ -17,19 +16,25 @@ buildPythonPackage rec { sha256 = "8195c8c1400ceb53496064314c6736719c6f25e7479cd24c77be3d9361cddc27"; }; - checkInputs = [ markupsafe nose mock ]; propagatedBuildInputs = [ markupsafe ]; + checkInputs = [ pytestCheckHook markupsafe mock ]; - doCheck = !isPyPy; # https://bitbucket.org/zzzeek/mako/issue/238/2-tests-failed-on-pypy-24-25 - checkPhase = '' - ${python.interpreter} -m unittest discover - ''; + disabledTests = lib.optionals isPyPy [ + # https://github.com/sqlalchemy/mako/issues/315 + "test_alternating_file_names" + # https://github.com/sqlalchemy/mako/issues/238 + "test_file_success" + "test_stdin_success" + # fails on pypy2.7 + "test_bytestring_passthru" + ]; - meta = { + meta = with lib; { description = "Super-fast templating language"; - homepage = "http://www.makotemplates.org"; - license = lib.licenses.mit; - platforms = lib.platforms.unix; - maintainers = with lib.maintainers; [ domenkozar ]; + homepage = "https://www.makotemplates.org/"; + changelog = "https://docs.makotemplates.org/en/latest/changelog.html"; + license = licenses.mit; + platforms = platforms.unix; + maintainers = with maintainers; [ domenkozar ]; }; } diff --git a/pkgs/development/python-modules/Theano/default.nix b/pkgs/development/python-modules/Theano/default.nix index cc2b681e415..ce32e42e471 100644 --- a/pkgs/development/python-modules/Theano/default.nix +++ b/pkgs/development/python-modules/Theano/default.nix @@ -68,7 +68,9 @@ in buildPythonPackage rec { --replace 'StrParam(default_dnn_base_path)' 'StrParam('\'''${cudnn}'\''')' ''; - preCheck = '' + # needs to be postFixup so it runs before pythonImportsCheck even when + # doCheck = false (meaning preCheck would be disabled) + postFixup = '' mkdir -p check-phase export HOME=$(pwd)/check-phase ''; @@ -81,6 +83,8 @@ in buildPythonPackage rec { checkInputs = [ nose ]; propagatedBuildInputs = [ numpy numpy.blas scipy six libgpuarray_ ]; + pythonImportsCheck = [ "theano" ]; + meta = with stdenv.lib; { homepage = "http://deeplearning.net/software/theano/"; description = "A Python library for large-scale array computation"; diff --git a/pkgs/development/python-modules/accupy/default.nix b/pkgs/development/python-modules/accupy/default.nix index f36e12b365a..0d2cd2239b5 100644 --- a/pkgs/development/python-modules/accupy/default.nix +++ b/pkgs/development/python-modules/accupy/default.nix @@ -14,12 +14,12 @@ buildPythonPackage rec { pname = "accupy"; - version = "0.3.2"; + version = "0.3.3"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "be5c8c9ef2f83c9eeddac85463879957c87a93b257a6202a76ad6b43080b32f9"; + sha256 = "a234c9897a683a6ade44f0bafa71196f122a61e3ebeacb5b813e7d139d54f3c7"; }; buildInputs = [ diff --git a/pkgs/development/python-modules/accuweather/default.nix b/pkgs/development/python-modules/accuweather/default.nix new file mode 100644 index 00000000000..ed6dcb54377 --- /dev/null +++ b/pkgs/development/python-modules/accuweather/default.nix @@ -0,0 +1,28 @@ +{ aiohttp, buildPythonPackage, fetchFromGitHub, lib, pytest, pytestCheckHook +, pytestcov, pytestrunner, pytest-asyncio, python, pythonOlder }: + +buildPythonPackage rec { + pname = "accuweather"; + version = "0.0.11"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "bieniu"; + repo = pname; + rev = version; + sha256 = "1sgbw9yldf81phwx6pbvqg9sp767whxymyj0ca9pwx1r6ipr080h"; + }; + + nativeBuildInputs = [ pytestrunner ]; + propagatedBuildInputs = [ aiohttp ]; + checkInputs = [ pytestCheckHook pytestcov pytest-asyncio ]; + + meta = with lib; { + description = + "Python wrapper for getting weather data from AccuWeather servers."; + homepage = "https://github.com/bieniu/accuweather"; + license = licenses.asl20; + maintainers = with maintainers; [ jamiemagee ]; + }; +} diff --git a/pkgs/development/python-modules/afdko/default.nix b/pkgs/development/python-modules/afdko/default.nix index 5d960b5e92e..f1e3bf0cd56 100644 --- a/pkgs/development/python-modules/afdko/default.nix +++ b/pkgs/development/python-modules/afdko/default.nix @@ -1,22 +1,32 @@ -{ stdenv, buildPythonPackage, fetchPypi, pythonOlder, python +{ stdenv, buildPythonPackage, fetchPypi, fetchpatch, pythonOlder, python , fonttools, defcon, lxml, fs, unicodedata2, zopfli, brotlipy, fontpens , brotli, fontmath, mutatormath, booleanoperations -, ufoprocessor, ufonormalizer, psautohint +, ufoprocessor, ufonormalizer, psautohint, tqdm , setuptools_scm , pytest }: buildPythonPackage rec { pname = "afdko"; - version = "3.5.0"; + version = "3.5.1"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "0wid4l70bxm297xgayyrgw5glhp6n92gh4sz1nd4rncgf1ziz8ck"; + sha256 = "1qg7dgl81yq0sp50pkhgvmf8az1svx20zmpkfa68ka9d0ssh1wjw"; }; + # Skip date-dependent test. See + # https://github.com/adobe-type-tools/afdko/pull/1232 + # https://github.com/NixOS/nixpkgs/pull/98158#issuecomment-704321117 + patches = [ + (fetchpatch { + url = "https://github.com/adobe-type-tools/afdko/commit/2c36ad10f9d964759f643e8ed7b0972a27aa26bd.patch"; + sha256 = "0p6a485mmzrbfldfbhgfghsypfiad3cabcw7qlw2rh993ivpnibf"; + }) + ]; + nativeBuildInputs = [ setuptools_scm ]; propagatedBuildInputs = [ @@ -35,6 +45,7 @@ buildPythonPackage rec { ufoprocessor ufonormalizer psautohint + tqdm ]; # tests are broken on non x86_64 diff --git a/pkgs/development/python-modules/aioconsole/default.nix b/pkgs/development/python-modules/aioconsole/default.nix index 5ee7b329512..3090c3cb1f6 100644 --- a/pkgs/development/python-modules/aioconsole/default.nix +++ b/pkgs/development/python-modules/aioconsole/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi }: +{ lib, buildPythonPackage, fetchPypi, pythonOlder }: # This package provides a binary "apython" which sometimes invokes # [sys.executable, '-m', 'aioconsole'] as a subprocess. If apython is @@ -10,11 +10,12 @@ # wrapped to be able to find aioconsole and any other packages. buildPythonPackage rec { pname = "aioconsole"; - version = "0.2.1"; + version = "0.3.0"; + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "1l61zv6qq94ybqz7s8ag3h08dsh7jds6n2mgd43s7m8gbiy00ggn"; + sha256 = "b84724e6b93d1306a909974864df377236cf4bab8e0594096fed7936207205c5"; }; # hardcodes a test dependency on an old version of pytest-asyncio diff --git a/pkgs/development/python-modules/aioftp/default.nix b/pkgs/development/python-modules/aioftp/default.nix index c009ac4bdd5..e3ca13859ac 100644 --- a/pkgs/development/python-modules/aioftp/default.nix +++ b/pkgs/development/python-modules/aioftp/default.nix @@ -11,12 +11,12 @@ buildPythonPackage rec { pname = "aioftp"; - version = "0.18.0"; + version = "0.18.1"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "6f9d5b5ac910987daca4f7ad4a017530751e2107d2471c9f92a3e09b507cb2dc"; + sha256 = "b5a412c748722dd679c4c2e30dd40d70a7c8879636f6eb4489fdbca72965b125"; }; checkInputs = [ diff --git a/pkgs/development/python-modules/aiokafka/default.nix b/pkgs/development/python-modules/aiokafka/default.nix index b83da06c481..c6cfe99297b 100644 --- a/pkgs/development/python-modules/aiokafka/default.nix +++ b/pkgs/development/python-modules/aiokafka/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "aiokafka"; - version = "0.5.2"; + version = "0.6.0"; disabled = isPy27; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "aio-libs"; repo = "aiokafka"; rev = "v${version}"; - sha256 = "062kqsq75fi5pbpqf2a8nxm43pxpr6bwplg6bp4nv2a68r850pki"; + sha256 = "1l5nkz9blmfrbsj7m76vm8vcfdgvab33anzpq62384scp9yf8dln"; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/ansible-lint/default.nix b/pkgs/development/python-modules/ansible-lint/default.nix index b704fd7453f..bef31d1c1e5 100644 --- a/pkgs/development/python-modules/ansible-lint/default.nix +++ b/pkgs/development/python-modules/ansible-lint/default.nix @@ -4,30 +4,31 @@ , isPy27 , ansible , pyyaml -, six -, nose , setuptools_scm , ruamel_yaml -, pathlib2 +, rich +, pytestCheckHook +, pytestcov +, pytest_xdist +, git }: buildPythonPackage rec { pname = "ansible-lint"; - version = "4.2.0"; + version = "4.3.5"; # pip is not able to import version info on raumel.yaml disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "eb925d8682d70563ccb80e2aca7b3edf84fb0b768cea3edc6846aac7abdc414a"; + sha256 = "0mjn0drw3cx4pfl9qll5j7wib5r8msihs5yl8ri9fkfcbz7k1hmy"; }; format = "pyproject"; nativeBuildInputs = [ setuptools_scm ]; - propagatedBuildInputs = [ pyyaml six ansible ruamel_yaml ] - ++ lib.optionals isPy27 [ pathlib2 ]; - checkInputs = [ nose ]; + propagatedBuildInputs = [ pyyaml ansible ruamel_yaml rich ]; + checkInputs = [ pytestCheckHook pytestcov pytest_xdist git ]; postPatch = '' patchShebangs bin/ansible-lint @@ -42,11 +43,11 @@ buildPythonPackage rec { ''; checkPhase = '' - PATH=$out/bin:$PATH nosetests test + pytest -k 'not test_run_playbook_github and not test_run_single_role_path_no_trailing_slash_script' ''; meta = with lib; { - homepage = "https://github.com/willthames/ansible-lint"; + homepage = "https://github.com/ansible/ansible-lint"; description = "Best practices checker for Ansible"; license = licenses.mit; maintainers = [ maintainers.sengaya ]; diff --git a/pkgs/development/python-modules/anytree/default.nix b/pkgs/development/python-modules/anytree/default.nix index 6b25952493b..c11833ba579 100644 --- a/pkgs/development/python-modules/anytree/default.nix +++ b/pkgs/development/python-modules/anytree/default.nix @@ -1,13 +1,15 @@ { lib , buildPythonPackage , fetchPypi +, pythonOlder , substituteAll -, fetchpatch -, nose , six , withGraphviz ? true , graphviz , fontconfig +# Tests +, pytestCheckHook +, nose }: buildPythonPackage rec { @@ -26,10 +28,6 @@ buildPythonPackage rec { }) ]; - checkInputs = [ - nose - ]; - propagatedBuildInputs = [ six ]; @@ -42,13 +40,13 @@ buildPythonPackage rec { # circular dependency anytree → graphviz → pango → glib → gtk-doc → anytree doCheck = withGraphviz; - checkPhase = '' - runHook preCheck + checkInputs = [ pytestCheckHook nose ]; - nosetests - - runHook postCheck - ''; + pytestFlagsArray = lib.optionals (pythonOlder "3.4") [ + # Use enums, which aren't available pre-python3.4 + "--ignore=tests/test_resolver.py" + "--ignore=tests/test_search.py" + ]; meta = with lib; { description = "Powerful and Lightweight Python Tree Data Structure"; diff --git a/pkgs/development/python-modules/apprise/default.nix b/pkgs/development/python-modules/apprise/default.nix index 1c140266b9e..5c260692887 100644 --- a/pkgs/development/python-modules/apprise/default.nix +++ b/pkgs/development/python-modules/apprise/default.nix @@ -1,15 +1,15 @@ { lib, buildPythonPackage, fetchPypi , Babel, requests, requests_oauthlib, six, click, markdown, pyyaml -, pytestrunner, coverage, flake8, mock, pytest, pytestcov, tox +, pytestrunner, coverage, flake8, mock, pytest, pytestcov, tox, gntp, sleekxmpp }: buildPythonPackage rec { pname = "apprise"; - version = "0.8.7"; + version = "0.8.9"; src = fetchPypi { inherit pname version; - sha256 = "18a65c5917bf7f2d48bb557bf0879e49c5293b4c0e9809328387ae09338ae37b"; + sha256 = "024db00c6a80dbc8c9038b2de211c9fd32963046612882f3f54ad78930f3e0f7"; }; nativeBuildInputs = [ Babel ]; @@ -19,7 +19,7 @@ buildPythonPackage rec { ]; checkInputs = [ - pytestrunner coverage flake8 mock pytest pytestcov tox + pytestrunner coverage flake8 mock pytest pytestcov tox gntp sleekxmpp ]; meta = with lib; { diff --git a/pkgs/development/python-modules/aria2p/default.nix b/pkgs/development/python-modules/aria2p/default.nix index 9126969c22d..a7d8221d78e 100644 --- a/pkgs/development/python-modules/aria2p/default.nix +++ b/pkgs/development/python-modules/aria2p/default.nix @@ -5,7 +5,7 @@ buildPythonPackage rec { pname = "aria2p"; - version = "0.7.0"; + version = "0.9.1"; format = "pyproject"; disabled = pythonOlder "3.6"; @@ -13,7 +13,7 @@ buildPythonPackage rec { owner = "pawamoy"; repo = pname; rev = "v${version}"; - sha256 = "1inak3y2win58zbzykfzy6xp00f276sqsz69h2nfsd93mpr74wf6"; + sha256 = "1s4kad6jnfz9p64gkqclkfq2x2bn8dbc0hyr86d1545bgn7pz672"; }; nativeBuildInputs = [ poetry ]; diff --git a/pkgs/development/python-modules/asgi-csrf/default.nix b/pkgs/development/python-modules/asgi-csrf/default.nix index 12c94aee157..e838ec787c3 100644 --- a/pkgs/development/python-modules/asgi-csrf/default.nix +++ b/pkgs/development/python-modules/asgi-csrf/default.nix @@ -1,8 +1,8 @@ { stdenv, buildPythonPackage, isPy27, fetchFromGitHub, itsdangerous, python-multipart -, pytest, starlette, httpx, pytest-asyncio }: +, pytestCheckHook, starlette, httpx, pytest-asyncio }: buildPythonPackage rec { - version = "0.7"; + version = "0.7.1"; pname = "asgi-csrf"; disabled = isPy27; @@ -11,15 +11,26 @@ buildPythonPackage rec { owner = "simonw"; repo = pname; rev = version; - sha256 = "1vf4lh007790836cp3hd6wf8wsgj045dcg0w1cm335p08zz6j4k7"; + sha256 = "1hhqrb9r46y6i3d3w6hc9zm6yyikdyd2k5pcbyw0r9fl959yi4hf"; }; - propagatedBuildInputs = [ itsdangerous python-multipart ]; + propagatedBuildInputs = [ + itsdangerous + python-multipart + ]; + + checkInputs = [ + httpx + pytest-asyncio + pytestCheckHook + starlette + ]; + + # tests fail while importing a private module from httpx + # E ModuleNotFoundError: No module named 'httpx._content_streams' + # https://github.com/simonw/asgi-csrf/issues/18 + doCheck = false; - checkInputs = [ pytest starlette httpx pytest-asyncio ]; - checkPhase = '' - pytest test_asgi_csrf.py - ''; pythonImportsCheck = [ "asgi_csrf" ]; meta = with stdenv.lib; { diff --git a/pkgs/development/python-modules/aubio/default.nix b/pkgs/development/python-modules/aubio/default.nix new file mode 100644 index 00000000000..4616e1b6ed3 --- /dev/null +++ b/pkgs/development/python-modules/aubio/default.nix @@ -0,0 +1,35 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, numpy +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "aubio"; + version = "0.4.9"; + + src = fetchFromGitHub { + owner = pname; + repo = pname; + rev = version; + sha256 = "0fhxikvlr010nbh02g455d5y8bq6j5yw180cdh4gsd0hb43y3z26"; + }; + + propagatedBuildInputs = [ + numpy + ]; + + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ "aubio" ]; + + meta = with lib; { + description = "a library for audio and music analysis"; + homepage = "https://aubio.org"; + license = licenses.gpl3; + maintainers = with maintainers; [ hexa ]; + }; +} diff --git a/pkgs/development/python-modules/audioread/default.nix b/pkgs/development/python-modules/audioread/default.nix index addd187abeb..a4f6d905765 100644 --- a/pkgs/development/python-modules/audioread/default.nix +++ b/pkgs/development/python-modules/audioread/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "audioread"; - version = "2.1.8"; + version = "2.1.9"; src = fetchPypi { inherit pname version; - sha256 = "073904fabc842881e07bd3e4a5776623535562f70b1655b635d22886168dd168"; + sha256 = "a3480e42056c8e80a8192a54f6729a280ef66d27782ee11cbd63e9d4d1523089"; }; nativeBuildInputs = [ pytestrunner ]; diff --git a/pkgs/development/python-modules/auth0-python/default.nix b/pkgs/development/python-modules/auth0-python/default.nix index 1b50e70aaee..2af445b48c5 100644 --- a/pkgs/development/python-modules/auth0-python/default.nix +++ b/pkgs/development/python-modules/auth0-python/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "auth0-python"; - version = "3.12.0"; + version = "3.13.0"; src = fetchPypi { inherit pname version; - sha256 = "fbc54a231ca787ae0917223028269582abbd963cfa9d53ba822a601dd9cd2215"; + sha256 = "2e968d01364c8c94fbe85154ab77ebe9e51a3f8282405bb33748071452063004"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/authlib/default.nix b/pkgs/development/python-modules/authlib/default.nix index bf82d106598..94fc7215c34 100644 --- a/pkgs/development/python-modules/authlib/default.nix +++ b/pkgs/development/python-modules/authlib/default.nix @@ -8,14 +8,14 @@ }: buildPythonPackage rec { - version = "0.14.3"; + version = "0.15.1"; pname = "authlib"; src = fetchFromGitHub { owner = "lepture"; repo = "authlib"; rev = "v${version}"; - sha256 = "0ph97j94i40jj7nc5ya8pfq0ccx023zbqpcs5hrxmib53g64k5xy"; + sha256 = "0jh4kdi5spzhmgvq3ffz2q467hjycz3wg97f7n53rffiwd86jrh5"; }; propagatedBuildInputs = [ cryptography requests ]; diff --git a/pkgs/development/python-modules/aws-lambda-builders/default.nix b/pkgs/development/python-modules/aws-lambda-builders/default.nix index fdce47b2594..804ad078acb 100644 --- a/pkgs/development/python-modules/aws-lambda-builders/default.nix +++ b/pkgs/development/python-modules/aws-lambda-builders/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "aws-lambda-builders"; - version = "0.9.0"; + version = "1.1.0"; # No tests available in PyPI tarball src = fetchFromGitHub { owner = "awslabs"; repo = "aws-lambda-builders"; rev = "v${version}"; - sha256 = "0cgb0hwf4xg5dmm32wwlxqy7a77jw6gpnj7v8rq5948hsy2sfrcp"; + sha256 = "1r4939m5k1nj6l9bv972z4fkmkl0z5f5r29bq7588yk113kkqr0c"; }; # Package is not compatible with Python 3.5 diff --git a/pkgs/development/python-modules/aws-sam-translator/default.nix b/pkgs/development/python-modules/aws-sam-translator/default.nix index 5245801bb09..9073df2600d 100644 --- a/pkgs/development/python-modules/aws-sam-translator/default.nix +++ b/pkgs/development/python-modules/aws-sam-translator/default.nix @@ -10,11 +10,11 @@ buildPythonPackage rec { pname = "aws-sam-translator"; - version = "1.26.0"; + version = "1.27.0"; src = fetchPypi { inherit pname version; - sha256 = "1a3fd8e48a745967e8457b9cefdc3ad0f139ac4a25af4db9c13a9e1c19ea6910"; + sha256 = "0m24cdiry8p74s5ysyriy6wks4ic8782sf21q4yvlwfn9hpi4n1j"; }; # Tests are not included in the PyPI package diff --git a/pkgs/development/python-modules/azure-keyvault-keys/default.nix b/pkgs/development/python-modules/azure-keyvault-keys/default.nix index 25ce0fd67db..46bd196a3d8 100644 --- a/pkgs/development/python-modules/azure-keyvault-keys/default.nix +++ b/pkgs/development/python-modules/azure-keyvault-keys/default.nix @@ -10,13 +10,13 @@ buildPythonPackage rec { pname = "azure-keyvault-keys"; - version = "4.2.0"; + version = "4.3.0"; disabled = isPy27; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "e47b76ca5d99b12436c64ce4431271cd6744fba017f282991b84ce303e0b9eaa"; + sha256 = "064a98791fe447a0e57850bb5ec1ec43e7d5fd39266319b5acc44a9704a3b966"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-datamigration/default.nix b/pkgs/development/python-modules/azure-mgmt-datamigration/default.nix index c82bfeab2ed..1162b0405a7 100644 --- a/pkgs/development/python-modules/azure-mgmt-datamigration/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-datamigration/default.nix @@ -11,12 +11,12 @@ buildPythonPackage rec { pname = "azure-mgmt-datamigration"; - version = "4.0.0"; + version = "4.1.0"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "1efda568d67af911156591eb308432b5f9a56075b57ac0a5dd9f7aee17d79217"; + sha256 = "c33d1deb0ee173a15c8ec21a1e714ba544fe5f4895d3b1d8b0581f3c1b2e8ce4"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-keyvault/default.nix b/pkgs/development/python-modules/azure-mgmt-keyvault/default.nix index 5b9ea536dff..6ad96d60bc9 100644 --- a/pkgs/development/python-modules/azure-mgmt-keyvault/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-keyvault/default.nix @@ -12,12 +12,12 @@ buildPythonPackage rec { pname = "azure-mgmt-keyvault"; - version = "7.0.0"; + version = "8.0.0"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "128c1424373aabab5ffcfa74a3ee73cf8bda0a9259229ce2c1d09a8bc9f7370a"; + sha256 = "2c974c6114d8d27152642c82a975812790a5e86ccf609bf370a476d9ea0d2e7d"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-kusto/default.nix b/pkgs/development/python-modules/azure-mgmt-kusto/default.nix index 0cb180064ee..93c78c401f0 100644 --- a/pkgs/development/python-modules/azure-mgmt-kusto/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-kusto/default.nix @@ -5,13 +5,13 @@ }: buildPythonPackage rec { - version = "0.9.0"; + version = "0.10.0"; pname = "azure-mgmt-kusto"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "9210db89fa18ee8ed53339cd63bbe6fe1d9624cd793b54b7451ddbda8ae92ef3"; + sha256 = "09e8d4928e19d12feb374adb47651b474f3ee3bc6a12704e4b70c9b38e3bcd9e"; extension = "zip"; }; diff --git a/pkgs/development/python-modules/azure-mgmt-sql/default.nix b/pkgs/development/python-modules/azure-mgmt-sql/default.nix index e4ee9c90519..dd80641a48a 100644 --- a/pkgs/development/python-modules/azure-mgmt-sql/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-sql/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "azure-mgmt-sql"; - version = "0.21.0"; + version = "0.22.0"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "7bf7a41d2e42532a00b5f41d3fc0512244451a35f038ac0a25c96ef2c5c04300"; + sha256 = "01c82a1559f49e5f51021b8fbd35e738e08cbede1f39cf00da8085c853575f39"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-subscription/default.nix b/pkgs/development/python-modules/azure-mgmt-subscription/default.nix index 6a429a056f4..ee661627222 100644 --- a/pkgs/development/python-modules/azure-mgmt-subscription/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-subscription/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "azure-mgmt-subscription"; - version = "0.6.0"; + version = "0.7.0"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "7448a322eceed3d300e181fde0f626c0e37df773f6c7297df2b73d98cb0936cf"; + sha256 = "37f570b8872ae65dce312da116588ab8407a5c8a10d959597e61d19b21799f77"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-web/default.nix b/pkgs/development/python-modules/azure-mgmt-web/default.nix index 727311cc09a..a99dd764c1a 100644 --- a/pkgs/development/python-modules/azure-mgmt-web/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-web/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "azure-mgmt-web"; - version = "0.47.0"; + version = "0.48.0"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "1s6c477q2kpyiqkisw6l70ydyjkv3ay6zjjj4jl4ipv05a7356kq"; + sha256 = "da0f9e3b57528c72a7bc92e3515413a4a4fdbc9626c26ac04b7551a7739a81ec"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/bacpypes/default.nix b/pkgs/development/python-modules/bacpypes/default.nix index 141dbf241f2..3999efd12b6 100644 --- a/pkgs/development/python-modules/bacpypes/default.nix +++ b/pkgs/development/python-modules/bacpypes/default.nix @@ -2,14 +2,14 @@ , wheel, pytestCheckHook, pytestrunner }: buildPythonPackage rec { - version = "0.18.0"; + version = "0.18.1"; pname = "bacpypes"; src = fetchFromGitHub { owner = "JoelBender"; repo = "bacpypes"; - rev = "${version}"; - sha256 = "1nz0qi46z6n455mw2ppxgz091qh0irizlxpvkx7iw1l7f6mmgj0x"; + rev = version; + sha256 = "1fxrh57z3fjl95db8jh71grkv5id8qk65g6k5jqcs9v3dgkg8jkl"; }; propagatedBuildInputs = [ wheel ]; diff --git a/pkgs/development/python-modules/baron/default.nix b/pkgs/development/python-modules/baron/default.nix new file mode 100644 index 00000000000..8a04befc6d1 --- /dev/null +++ b/pkgs/development/python-modules/baron/default.nix @@ -0,0 +1,24 @@ +{ lib, fetchPypi, buildPythonPackage, rply, pytestCheckHook, isPy3k }: + +buildPythonPackage rec { + pname = "baron"; + version = "0.9"; + + src = fetchPypi { + inherit pname version; + sha256 = "0fib74nkqnl1i2zzlhbbfpw3whwc4951p9x61r2xrxhwp4r9yn5h"; + }; + + propagatedBuildInputs = [ rply ]; + + checkInputs = [ pytestCheckHook ]; + + doCheck = isPy3k; + + meta = with lib; { + homepage = "https://github.com/gristlabs/asttokens"; + description = "Abstraction on top of baron, a FST for python to make writing refactoring code a realistic task"; + license = licenses.lgpl3Plus; + maintainers = with maintainers; [ marius851000 ]; + }; +} diff --git a/pkgs/development/python-modules/bayesian-optimization/default.nix b/pkgs/development/python-modules/bayesian-optimization/default.nix index 9174b25f6b3..a1739bf4773 100644 --- a/pkgs/development/python-modules/bayesian-optimization/default.nix +++ b/pkgs/development/python-modules/bayesian-optimization/default.nix @@ -9,13 +9,13 @@ buildPythonPackage rec { pname = "bayesian-optimization"; - version = "1.1.0"; + version = "1.2.0"; src = fetchFromGitHub { owner = "fmfn"; repo = "BayesianOptimization"; - rev = "v${version}"; - sha256 = "0ylip9xdi0cjzmdayxxpazdfaa9dl0sdcl2qsfn3p0cipj59bdvd"; + rev = version; + sha256 = "01mg9npiqh1qmq5ldnbpjmr8qkiw827msiv3crpkhbj4bdzasbfm"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/beancount/default.nix b/pkgs/development/python-modules/beancount/default.nix index b3232f8eca5..f1dc7a5349d 100644 --- a/pkgs/development/python-modules/beancount/default.nix +++ b/pkgs/development/python-modules/beancount/default.nix @@ -4,14 +4,14 @@ , ply, python_magic, pytest, requests }: buildPythonPackage rec { - version = "2.3.2"; + version = "2.3.3"; pname = "beancount"; disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "1wfpf2b0sha84rz0qgkanc82wharjqr2nr7xxg1rngrci2h0aqhd"; + sha256 = "0767ap2n9vk9dz40njndfhaprajr75fvzx7igbd1szc6x8wri8nr"; }; # Tests require files not included in the PyPI archive. diff --git a/pkgs/development/python-modules/bellows/default.nix b/pkgs/development/python-modules/bellows/default.nix index 4b5cabbbde4..b0c899cdd3b 100644 --- a/pkgs/development/python-modules/bellows/default.nix +++ b/pkgs/development/python-modules/bellows/default.nix @@ -5,14 +5,14 @@ let pname = "bellows"; - version = "0.18.1"; + version = "0.20.3"; in buildPythonPackage rec { inherit pname version; src = fetchPypi { inherit pname version; - sha256 = "6a2e323c2be6f10a8e99fffccb5670bc77bbddb7b5bd9253b69021120f2ab9d7"; + sha256 = "9342b6b9423c818f99f7c6d9086fbb5e27d5c2efbb1f2a08f6f5a917c4991f86"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/bids-validator/default.nix b/pkgs/development/python-modules/bids-validator/default.nix index bcf45aff832..b139a88820e 100644 --- a/pkgs/development/python-modules/bids-validator/default.nix +++ b/pkgs/development/python-modules/bids-validator/default.nix @@ -4,12 +4,12 @@ }: buildPythonPackage rec { - version = "1.5.4"; + version = "1.5.7"; pname = "bids-validator"; src = fetchPypi { inherit pname version; - sha256 = "b8292f4efb3617532f93c60acfec242150406bfd9e298d7f01187d67c311aa91"; + sha256 = "624fade609636c64e7829ff072bdf12f93512948a803059b059e5c90df894be2"; }; # needs packages which are not available in nixpkgs diff --git a/pkgs/development/python-modules/binwalk/default.nix b/pkgs/development/python-modules/binwalk/default.nix index 0970cc18249..c6fbbc13c43 100644 --- a/pkgs/development/python-modules/binwalk/default.nix +++ b/pkgs/development/python-modules/binwalk/default.nix @@ -11,6 +11,8 @@ , cabextract , cramfsprogs , cramfsswap +, sasquatch +, squashfsTools , lzma , matplotlib , nose @@ -32,7 +34,7 @@ buildPythonPackage { sha256 = "1bxgj569fzwv6jhcbl864nmlsi9x1k1r20aywjxc8b9b1zgqrlvc"; }; - propagatedBuildInputs = [ zlib xz ncompress gzip bzip2 gnutar p7zip cabextract cramfsswap cramfsprogs lzma pycrypto ] + propagatedBuildInputs = [ zlib xz ncompress gzip bzip2 gnutar p7zip cabextract cramfsswap cramfsprogs sasquatch squashfsTools lzma pycrypto ] ++ stdenv.lib.optionals visualizationSupport [ matplotlib pyqtgraph ]; # setup.py only installs version.py during install, not test diff --git a/pkgs/development/python-modules/blessed/default.nix b/pkgs/development/python-modules/blessed/default.nix index e2963eb51b1..b55e2939982 100644 --- a/pkgs/development/python-modules/blessed/default.nix +++ b/pkgs/development/python-modules/blessed/default.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { pname = "blessed"; - version = "1.17.10"; + version = "1.17.11"; src = fetchPypi { inherit pname version; - sha256 = "09kcz6w87x34a3h4r142z3zgw0av19cxn9jrbz52wkpm1534dfaq"; + sha256 = "7d4914079a6e8e14fbe080dcaf14dee596a088057cdc598561080e3266123b48"; }; checkInputs = [ pytest mock glibcLocales ]; diff --git a/pkgs/development/python-modules/block-io/default.nix b/pkgs/development/python-modules/block-io/default.nix index ec1229965e0..07d6cffe56c 100644 --- a/pkgs/development/python-modules/block-io/default.nix +++ b/pkgs/development/python-modules/block-io/default.nix @@ -20,13 +20,16 @@ buildPythonPackage rec { preConfigure = '' substituteInPlace setup.py \ - --replace "ecdsa==0.13" "ecdsa>=0.13" + --replace "ecdsa==0.13" "ecdsa>=0.13" \ + --replace "base58==1.0.3" "base58>=1.0.3" ''; # Tests needs a BlockIO API key to run properly # https://github.com/BlockIo/block_io-python/blob/79006bc8974544b70a2d8e9f19c759941d32648e/test.py#L18 doCheck = false; + pythonImportsCheck = [ "block_io" ]; + meta = with stdenv.lib; { description = "Integrate Bitcoin, Dogecoin and Litecoin in your Python applications using block.io"; homepage = "https://github.com/BlockIo/block_io-python"; diff --git a/pkgs/development/python-modules/boto3/default.nix b/pkgs/development/python-modules/boto3/default.nix index b7d599f5811..c1f1b180b70 100644 --- a/pkgs/development/python-modules/boto3/default.nix +++ b/pkgs/development/python-modules/boto3/default.nix @@ -13,11 +13,11 @@ buildPythonPackage rec { pname = "boto3"; - version = "1.14.60"; # N.B: if you change this, change botocore too + version = "1.15.9"; # N.B: if you change this, change botocore too src = fetchPypi { inherit pname version; - sha256 = "05s2ysp90mwz5aydzfs9xm3hk9pz7s95zzpjg6g1msyy2gp2gjnq"; + sha256 = "0zrsrz7c8aqj3n06piybwf7vy026rflr0ky362q615rln6iggx82"; }; propagatedBuildInputs = [ botocore jmespath s3transfer ] ++ lib.optionals (!isPy3k) [ futures ]; diff --git a/pkgs/development/python-modules/botocore/default.nix b/pkgs/development/python-modules/botocore/default.nix index 2593e3909e0..daa5897fefd 100644 --- a/pkgs/development/python-modules/botocore/default.nix +++ b/pkgs/development/python-modules/botocore/default.nix @@ -12,11 +12,11 @@ buildPythonPackage rec { pname = "botocore"; - version = "1.17.60"; # N.B: if you change this, change boto3 and awscli to a matching version + version = "1.18.9"; # N.B: if you change this, change boto3 and awscli to a matching version src = fetchPypi { inherit pname version; - sha256 = "0n3a0mhx00i2i99mcwdkk7nbqdpd50zdfkg14mki0ydccqx1jgqr"; + sha256 = "0rb3in7n9hdhp3sklkw78l378103khgmhdfy13kxfbgb0646pc1m"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/bpython/default.nix b/pkgs/development/python-modules/bpython/default.nix index ad7322cbf66..bbdca0a0097 100644 --- a/pkgs/development/python-modules/bpython/default.nix +++ b/pkgs/development/python-modules/bpython/default.nix @@ -12,11 +12,11 @@ buildPythonPackage rec { pname = "bpython"; - version = "0.19"; + version = "0.20"; src = fetchPypi { inherit pname version; - sha256 = "1764ikgj24jjq46s50apwkydqvy5a13adb2nbszk8kbci6df0v27"; + sha256 = "fec7d97be9912a50d8f5b34ca10d70715c99a33f0cd0b9e4977c1b0f617fa913"; }; patches = [ (substituteAll { diff --git a/pkgs/development/python-modules/bravia-tv/default.nix b/pkgs/development/python-modules/bravia-tv/default.nix index 00d554ef14b..cfb30a926d5 100644 --- a/pkgs/development/python-modules/bravia-tv/default.nix +++ b/pkgs/development/python-modules/bravia-tv/default.nix @@ -2,14 +2,14 @@ buildPythonPackage rec { pname = "bravia-tv"; - version = "1.0.6"; + version = "1.0.7"; disabled = isPy27; src = fetchFromGitHub { owner = "dcnielsen90"; repo = "python-bravia-tv"; rev = "v${version}"; - sha256 = "07i1j3y04w2jwylff8w1aimmy4fj1g42wq8iz83an7dl4cz3rap9"; + sha256 = "0bg33nilybh46s6yz3x7a7x8biwbvy5scqdrl4didhn7vjd4w5fn"; }; propagatedBuildInputs = [ requests ]; diff --git a/pkgs/development/python-modules/bugsnag/default.nix b/pkgs/development/python-modules/bugsnag/default.nix index adae7ff1c38..a2c41599b36 100644 --- a/pkgs/development/python-modules/bugsnag/default.nix +++ b/pkgs/development/python-modules/bugsnag/default.nix @@ -1,17 +1,19 @@ { stdenv , buildPythonPackage , fetchPypi +, pythonOlder , six , webob }: buildPythonPackage rec { pname = "bugsnag"; - version = "3.7.1"; + version = "4.0.1"; + disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - sha256 = "32966bfe625ec6fc0dbc9d86d79a18f31b22b2fdec3ca070eeb3495304f7e18d"; + sha256 = "01c2186f6c2a6f801b66d8fc73b8986bd2d4931a6ab40b720e5fd0b66757facc"; }; propagatedBuildInputs = [ six webob ]; diff --git a/pkgs/development/python-modules/buildbot/default.nix b/pkgs/development/python-modules/buildbot/default.nix index 595f97bcb8f..55ff34b2520 100644 --- a/pkgs/development/python-modules/buildbot/default.nix +++ b/pkgs/development/python-modules/buildbot/default.nix @@ -103,7 +103,7 @@ let meta = with lib; { homepage = "https://buildbot.net/"; - description = "Buildbot is an open-source continuous integration framework for automating software build, test, and release processes"; + description = "An open-source continuous integration framework for automating software build, test, and release processes"; maintainers = with maintainers; [ nand0p ryansydnor lopsided98 ]; license = licenses.gpl2; }; diff --git a/pkgs/development/python-modules/can/default.nix b/pkgs/development/python-modules/can/default.nix index 0a7e58ac800..ea49c9b4a77 100644 --- a/pkgs/development/python-modules/can/default.nix +++ b/pkgs/development/python-modules/can/default.nix @@ -16,11 +16,11 @@ buildPythonPackage rec { pname = "python-can"; - version = "3.3.3"; + version = "3.3.4"; src = fetchPypi { inherit pname version; - sha256 = "ecd69cf6b2f0235345ebe607a15325cf1384c85b24ffbe1d68c3754357f87488"; + sha256 = "2d3c223b7adc4dd46ce258d4a33b7e0dbb6c339e002faa40ee4a69d5fdce9449"; }; propagatedBuildInputs = [ wrapt pyserial aenum ] ++ lib.optional (pythonOlder "3.5") typing; diff --git a/pkgs/development/python-modules/casbin/default.nix b/pkgs/development/python-modules/casbin/default.nix index 2fb670e418a..117b6374f91 100644 --- a/pkgs/development/python-modules/casbin/default.nix +++ b/pkgs/development/python-modules/casbin/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "casbin"; - version = "0.8.3"; + version = "0.9.0"; disabled = isPy27; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = pname; repo = "pycasbin"; rev = "v${version}"; - sha256 = "1s89m62933m4wprsknwhabgg7irykrcimv80hh2zkyyslz5vbq71"; + sha256 = "16bqa2f5l2cns2izc4siy8jw23q9vrqm9wnyp696fj83y77nkp75"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/cchardet/default.nix b/pkgs/development/python-modules/cchardet/default.nix index 5256d605049..b93ea9c3bd7 100644 --- a/pkgs/development/python-modules/cchardet/default.nix +++ b/pkgs/development/python-modules/cchardet/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "cchardet"; - version = "2.1.6"; + version = "2.1.7"; src = fetchPypi { inherit pname version; - sha256 = "1cs6y59qhbal8fgbyjk2lpjykh8kfjhq16clfssylsddb4hgnsmp"; + sha256 = "c428b6336545053c2589f6caf24ea32276c6664cb86db817e03a94c60afa0eaf"; }; checkInputs = [ nose ]; diff --git a/pkgs/development/python-modules/chalice/default.nix b/pkgs/development/python-modules/chalice/default.nix index fb2af329ea7..f985da36d17 100644 --- a/pkgs/development/python-modules/chalice/default.nix +++ b/pkgs/development/python-modules/chalice/default.nix @@ -22,11 +22,11 @@ buildPythonPackage rec { pname = "chalice"; - version = "1.18.1"; + version = "1.21.3"; src = fetchPypi { inherit pname version; - sha256 = "0zb4xk9b553pnfzh8s909cixfdplqnc3nda0fjwjrryi2nxjxd6a"; + sha256 = "0b44514cdbafab08b18e21f59fc016cead0b78f5f5fdf14eccd993c469130b39"; }; checkInputs = [ watchdog pytest hypothesis mock ]; diff --git a/pkgs/development/python-modules/cheetah3/default.nix b/pkgs/development/python-modules/cheetah3/default.nix index 1c133917cb2..e4fd549445a 100644 --- a/pkgs/development/python-modules/cheetah3/default.nix +++ b/pkgs/development/python-modules/cheetah3/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "Cheetah3"; - version = "3.2.5"; + version = "3.2.6"; src = fetchPypi { inherit pname version; - sha256 = "ececc9ca7c58b9a86ce71eb95594c4619949e2a058d2a1af74c7ae8222515eb1"; + sha256 = "f1c2b693cdcac2ded2823d363f8459ae785261e61c128d68464c8781dba0466b"; }; doCheck = false; # Circular dependency diff --git a/pkgs/development/python-modules/cma/default.nix b/pkgs/development/python-modules/cma/default.nix index 3d39392da6b..8937f78a7a6 100644 --- a/pkgs/development/python-modules/cma/default.nix +++ b/pkgs/development/python-modules/cma/default.nix @@ -7,13 +7,13 @@ buildPythonPackage rec { pname = "cma"; - version = "2.7.0"; + version = "3.0.3"; src = fetchFromGitHub { owner = "CMA-ES"; repo = "pycma"; rev = "r${version}"; - sha256 = "0c26969pcqj047axksfffd9pj77n16k4r9h6pyid9q3ah5zk0xg3"; + sha256 = "00vv7imdkv0bqcs4b8dg9nggxcl2fkcnhdd46n22bcmnwy8rjxv6"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/cmd2/default.nix b/pkgs/development/python-modules/cmd2/default.nix index 4a646060136..335649c6be9 100644 --- a/pkgs/development/python-modules/cmd2/default.nix +++ b/pkgs/development/python-modules/cmd2/default.nix @@ -6,11 +6,11 @@ }: buildPythonPackage rec { pname = "cmd2"; - version = "1.3.10"; + version = "1.3.11"; src = fetchPypi { inherit pname version; - sha256 = "960d8288c8e3a093d04975e3dd8461ce2e43c1d0c70e54873f622f8f0b77d6f5"; + sha256 = "826a288ee6d9c4ec1184e64e9566c09d3b73be8f4283c1898fa4332f1daf8dbf"; }; LC_ALL="en_US.UTF-8"; diff --git a/pkgs/development/python-modules/coordinates/default.nix b/pkgs/development/python-modules/coordinates/default.nix index 44a41b92c4e..c7a24a0c3e9 100644 --- a/pkgs/development/python-modules/coordinates/default.nix +++ b/pkgs/development/python-modules/coordinates/default.nix @@ -27,6 +27,6 @@ buildPythonPackage rec { description = "Convenience class for doing maths with explicit coordinates"; homepage = "https://github.com/clbarnes/coordinates"; license = licenses.mit; - maintainers = [ maintainers.mildlyincompetent ]; + maintainers = [ ]; }; } diff --git a/pkgs/development/python-modules/cryptography/default.nix b/pkgs/development/python-modules/cryptography/default.nix index d122c42e846..426f6af7aa6 100644 --- a/pkgs/development/python-modules/cryptography/default.nix +++ b/pkgs/development/python-modules/cryptography/default.nix @@ -22,11 +22,11 @@ buildPythonPackage rec { pname = "cryptography"; - version = "3.1"; # Also update the hash in vectors.nix + version = "3.1.1"; # Also update the hash in vectors.nix src = fetchPypi { inherit pname version; - sha256 = "021yccbqr446zh1c9l8yj79h9bgbd1cwv0ppj168w9y67i3rlh16"; + sha256 = "0z81q4d1nangw3r0v5f41mfl4d9r04qnbayl5ll5v5jpcfhwd7wx"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/python-modules/cryptography/vectors.nix b/pkgs/development/python-modules/cryptography/vectors.nix index 99f3b6f8974..c7b244ff041 100644 --- a/pkgs/development/python-modules/cryptography/vectors.nix +++ b/pkgs/development/python-modules/cryptography/vectors.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "10hixzqf2ppw8j61f6p04rgnq8ra6pjml68330s5af8df8xbqq16"; + sha256 = "1xp2j79c1y8qj4b97ygx451gzp8l4cp830hnvg3zw8j134bcaaam"; }; # No tests included diff --git a/pkgs/development/python-modules/css-parser/default.nix b/pkgs/development/python-modules/css-parser/default.nix index cba0c878701..3874300cde9 100644 --- a/pkgs/development/python-modules/css-parser/default.nix +++ b/pkgs/development/python-modules/css-parser/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "css-parser"; - version = "1.0.4"; + version = "1.0.5"; src = fetchPypi { inherit pname version; - sha256 = "c7ab355512ae51334ba6791a7e4d553f87bef17ba2026f1cc9bf3b17a7779d44"; + sha256 = "665b7965bef0c9b86955be7a3383ca44e519b46affc7c6bca5002cbdbd0bf19f"; }; # Test suite not included in tarball yet diff --git a/pkgs/development/python-modules/cx_oracle/default.nix b/pkgs/development/python-modules/cx_oracle/default.nix index cecb41c3d88..440e43cf81c 100644 --- a/pkgs/development/python-modules/cx_oracle/default.nix +++ b/pkgs/development/python-modules/cx_oracle/default.nix @@ -2,13 +2,13 @@ buildPythonPackage rec { pname = "cx_Oracle"; - version = "8.0.0"; + version = "8.0.1"; buildInputs = [ odpic ]; src = fetchPypi { inherit pname version; - sha256 = "cddc298301789c724de5817611f7bd38b4859b371928e2e85a9c37af222f73c8"; + sha256 = "f10ada7f821a325c6befdd6fef1cac44ebc830736d0b75dda7b8ac9f851087b2"; }; preConfigure = '' diff --git a/pkgs/development/python-modules/cytoolz/default.nix b/pkgs/development/python-modules/cytoolz/default.nix index 512e26023c0..0e72ecaa825 100644 --- a/pkgs/development/python-modules/cytoolz/default.nix +++ b/pkgs/development/python-modules/cytoolz/default.nix @@ -6,20 +6,19 @@ , toolz , python , fetchpatch +, isPy27 }: buildPythonPackage rec { pname = "cytoolz"; - version = "0.10.1"; + version = "0.11.0"; + disabled = isPy27 || isPyPy; src = fetchPypi { inherit pname version; - sha256 = "0p4a9nadsy1337gy2cnb5yanbn03j3zm6d9adyqad9bk3nlbpxc2"; + sha256 = "c64f3590c3eb40e1548f0d3c6b2ccde70493d0b8dc6cc7f9f3fec0bb3dcd4222"; }; - # Extension types - disabled = isPyPy; - checkInputs = [ nose ]; propagatedBuildInputs = [ toolz ]; diff --git a/pkgs/development/python-modules/dask/default.nix b/pkgs/development/python-modules/dask/default.nix index 2a088706f6c..59ea588851e 100644 --- a/pkgs/development/python-modules/dask/default.nix +++ b/pkgs/development/python-modules/dask/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "dask"; - version = "2.22.0"; + version = "2.25.0"; disabled = pythonOlder "3.5"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "dask"; repo = pname; rev = version; - sha256 = "08nvxj81cz9x92dh2gbmm4imkr8cfljfi2hxkballv2ygwcbzg8g"; + sha256 = "1irp6s577yyjvrvkg00hh1wnl8vrv7pbnbr09mk67z9y7s6xhiw3"; }; checkInputs = [ @@ -70,7 +70,8 @@ buildPythonPackage rec { meta = { description = "Minimal task scheduling abstraction"; - homepage = "https://github.com/ContinuumIO/dask/"; + homepage = "https://dask.org/"; + changelog = "https://docs.dask.org/en/latest/changelog.html"; license = lib.licenses.bsd3; maintainers = with lib.maintainers; [ fridh ]; }; diff --git a/pkgs/development/python-modules/datamodeldict/default.nix b/pkgs/development/python-modules/datamodeldict/default.nix index 1a77c22104c..e4c10d8c22c 100644 --- a/pkgs/development/python-modules/datamodeldict/default.nix +++ b/pkgs/development/python-modules/datamodeldict/default.nix @@ -5,12 +5,12 @@ }: buildPythonPackage rec { - version = "0.9.6"; + version = "0.9.7"; pname = "DataModelDict"; src = fetchPypi { inherit pname version; - sha256 = "857d4bf33f0b26ca718bd821fda7502dd6fb15aa09201b1fbdfaf4dfc85b8f6c"; + sha256 = "b1be7573cb4401aa250fd00f2e6392543f6f2498f8e02f6313595aa220e5c99e"; }; propagatedBuildInputs = [ xmltodict ]; diff --git a/pkgs/development/python-modules/datasette/default.nix b/pkgs/development/python-modules/datasette/default.nix index 5fa42c861ed..3ae21421816 100644 --- a/pkgs/development/python-modules/datasette/default.nix +++ b/pkgs/development/python-modules/datasette/default.nix @@ -73,19 +73,26 @@ buildPythonPackage rec { --replace "PyYAML~=5.3" "PyYAML" ''; - # test_html is very slow - # test_black fails on darwin - dontUseSetuptoolsCheck = true; + # takes 30-180 mins to run entire test suite, not worth the cpu resources, slows down reviews + # with pytest-xdist, it still takes around 10mins with 32 cores + # just run the messages tests, as this should give some indictation of correctness pytestFlagsArray = [ - "--ignore=tests/test_html.py" - "--ignore=tests/test_docs.py" - "--ignore=tests/test_black.py" + "tests/test_messages.py" ]; disabledTests = [ "facet" "_invalid_database" # checks error message when connecting to invalid database ]; - pythonImportsCheck = [ "datasette" ]; + + pythonImportsCheck = [ + "datasette" + "datasette.cli" + "datasette.app" + "datasette.database" + "datasette.renderer" + "datasette.tracer" + "datasette.plugins" + ]; meta = with lib; { description = "An instant JSON API for your SQLite databases"; diff --git a/pkgs/development/python-modules/debian/default.nix b/pkgs/development/python-modules/debian/default.nix index dec6fc2dadd..9f5cb744e55 100644 --- a/pkgs/development/python-modules/debian/default.nix +++ b/pkgs/development/python-modules/debian/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "python-debian"; - version = "0.1.37"; + version = "0.1.38"; src = fetchPypi { inherit pname version; - sha256 = "ab04f535155810c46c8abf3f7d46364b67b034c49ff8690cdb510092eee56750"; + sha256 = "a352bb5f9ef19b0272078f516ee0ec42b05e90ac85651d87c10e7041550dcc1d"; }; propagatedBuildInputs = [ chardet six ]; diff --git a/pkgs/development/python-modules/debugpy/default.nix b/pkgs/development/python-modules/debugpy/default.nix index 52f23f437a6..5f10b7897e9 100644 --- a/pkgs/development/python-modules/debugpy/default.nix +++ b/pkgs/development/python-modules/debugpy/default.nix @@ -18,13 +18,13 @@ buildPythonPackage rec { pname = "debugpy"; - version = "1.0.0"; + version = "1.1.0"; src = fetchFromGitHub { owner = "Microsoft"; repo = pname; rev = "v${version}"; - sha256 = "1cxwbq97n5pfmq0hji1ybbc6i1jg5bjy830dq23zqxbwxxwjx98m"; + sha256 = "1f6a62hg82fn9ddrl6g11x2h27zng8jmrlfbnnra6q590i5v1ixr"; }; patches = [ @@ -45,6 +45,13 @@ buildPythonPackage rec { ./fix-test-pythonpath.patch ]; + postPatch = '' + # Use nixpkgs version instead of versioneer + substituteInPlace setup.py \ + --replace "cmds = versioneer.get_cmdclass()" "cmds = {}" \ + --replace "version=versioneer.get_version()" "version='${version}'" + ''; + # Remove pre-compiled "attach" libraries and recompile for host platform # Compile flags taken from linux_and_mac/compile_linux.sh & linux_and_mac/compile_mac.sh preBuild = ''( diff --git a/pkgs/development/python-modules/diff_cover/default.nix b/pkgs/development/python-modules/diff_cover/default.nix index 9f96c7644df..ab9d9493fd6 100644 --- a/pkgs/development/python-modules/diff_cover/default.nix +++ b/pkgs/development/python-modules/diff_cover/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "diff_cover"; - version = "3.0.1"; + version = "4.0.1"; preCheck = '' export LC_ALL=en_US.UTF-8; @@ -25,7 +25,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "13768c8bc755dd8e1184ce79b95bbc8115ea566282f4b06efbeca72a4d00427b"; + sha256 = "61a98ec126552d985c0e3e3c33cc72e79d7577f91f6edba99f635411a173d3b9"; }; propagatedBuildInputs = [ jinja2 jinja2_pluralize pygments six inflect ]; diff --git a/pkgs/development/python-modules/distributed/default.nix b/pkgs/development/python-modules/distributed/default.nix index 91f6f06f6d9..0267e959e5b 100644 --- a/pkgs/development/python-modules/distributed/default.nix +++ b/pkgs/development/python-modules/distributed/default.nix @@ -28,12 +28,12 @@ buildPythonPackage rec { pname = "distributed"; - version = "2.23.0"; + version = "2.30.0"; # get full repository need conftest.py to run tests src = fetchPypi { inherit pname version; - sha256 = "469e505fd7ce75f600188bdb69a95641899d5b372f74246c8f308376b6929e9c"; + sha256 = "3eb8e4173625cea6ebda2f0a079b813eeabbffd1b24584855cf063ed1cca60b3"; }; disabled = pythonOlder "3.6"; diff --git a/pkgs/development/python-modules/django-cleanup/default.nix b/pkgs/development/python-modules/django-cleanup/default.nix index bb933fd0343..66d202304ee 100644 --- a/pkgs/development/python-modules/django-cleanup/default.nix +++ b/pkgs/development/python-modules/django-cleanup/default.nix @@ -4,10 +4,10 @@ buildPythonPackage rec { pname = "django-cleanup"; - version = "5.0.0"; + version = "5.1.0"; src = fetchPypi { inherit pname version; - sha256 = "84f0c0e0a74545adae4c944a76ccf8fb0c195dddccf3b7195c59267abb7763dd"; + sha256 = "8976aec12a22913afb3d1fcb541b1aedde2f5ec243e4260c5ff78bb6aa75a089"; }; checkInputs = [ django ]; diff --git a/pkgs/development/python-modules/django-filter/default.nix b/pkgs/development/python-modules/django-filter/default.nix index 2079d336737..93f3f20f305 100644 --- a/pkgs/development/python-modules/django-filter/default.nix +++ b/pkgs/development/python-modules/django-filter/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "django-filter"; - version = "2.3.0"; + version = "2.4.0"; src = fetchPypi { inherit pname version; - sha256 = "11e63dd759835d9ba7a763926ffb2662cf8a6dcb4c7971a95064de34dbc7e5af"; + sha256 = "84e9d5bb93f237e451db814ed422a3a625751cbc9968b484ecc74964a8696b06"; }; propagatedBuildInputs = [ django ]; diff --git a/pkgs/development/python-modules/django-oauth-toolkit/default.nix b/pkgs/development/python-modules/django-oauth-toolkit/default.nix index 700fc3ae4e8..83f1049a2e5 100644 --- a/pkgs/development/python-modules/django-oauth-toolkit/default.nix +++ b/pkgs/development/python-modules/django-oauth-toolkit/default.nix @@ -1,5 +1,5 @@ { stdenv, buildPythonPackage, fetchFromGitHub -, django_2_2, requests, oauthlib +, django, requests, oauthlib }: buildPythonPackage rec { @@ -13,7 +13,7 @@ buildPythonPackage rec { sha256 = "1zbksxrcxlqnapmlvx4rgvpqc4plgnq0xnf45cjwzwi1626zs8g6"; }; - propagatedBuildInputs = [ django_2_2 requests oauthlib ]; + propagatedBuildInputs = [ django requests oauthlib ]; # django.core.exceptions.ImproperlyConfigured: Requested setting OAUTH2_PROVIDER, but settings are not configured. You must either define the environment variable DJANGO_SETTINGS_MODULE or call settings.configure() before accessing settings doCheck = false; diff --git a/pkgs/development/python-modules/django/2_2.nix b/pkgs/development/python-modules/django/2.nix similarity index 100% rename from pkgs/development/python-modules/django/2_2.nix rename to pkgs/development/python-modules/django/2.nix diff --git a/pkgs/development/python-modules/django/3.nix b/pkgs/development/python-modules/django/3.nix new file mode 100644 index 00000000000..0648552b6f1 --- /dev/null +++ b/pkgs/development/python-modules/django/3.nix @@ -0,0 +1,48 @@ +{ stdenv +, buildPythonPackage +, fetchPypi +, substituteAll +, geos +, gdal +, asgiref +, pytz +, sqlparse +, pythonOlder +, withGdal ? false +}: + +buildPythonPackage rec { + pname = "Django"; + version = "3.1.2"; + + disabled = pythonOlder "3.7"; + + src = fetchPypi { + inherit pname version; + sha256 = "a2127ad0150ec6966655bedf15dbbff9697cc86d61653db2da1afa506c0b04cc"; + }; + + patches = stdenv.lib.optional withGdal + (substituteAll { + src = ./django_3_set_geos_gdal_lib.patch; + geos = geos; + gdal = gdal; + extension = stdenv.hostPlatform.extensions.sharedLibrary; + }); + + propagatedBuildInputs = [ + asgiref + pytz + sqlparse + ]; + + # too complicated to setup + doCheck = false; + + meta = with stdenv.lib; { + description = "A high-level Python Web framework"; + homepage = "https://www.djangoproject.com/"; + license = licenses.bsd3; + maintainers = with maintainers; [ georgewhewell lsix ]; + }; +} diff --git a/pkgs/development/python-modules/django/django_3_set_geos_gdal_lib.patch b/pkgs/development/python-modules/django/django_3_set_geos_gdal_lib.patch new file mode 100644 index 00000000000..6b853f8d85f --- /dev/null +++ b/pkgs/development/python-modules/django/django_3_set_geos_gdal_lib.patch @@ -0,0 +1,24 @@ +diff -Nur a/django/contrib/gis/gdal/libgdal.py b/django/contrib/gis/gdal/libgdal.py +--- a/django/contrib/gis/gdal/libgdal.py 2020-07-09 22:34:05.330568948 +0100 ++++ b/django/contrib/gis/gdal/libgdal.py 2020-07-09 22:35:08.679095615 +0100 +@@ -14,7 +14,7 @@ + from django.conf import settings + lib_path = settings.GDAL_LIBRARY_PATH + except (AttributeError, ImportError, ImproperlyConfigured, OSError): +- lib_path = None ++ lib_path = "@gdal@/lib/libgdal@extension@" + + if lib_path: + lib_names = None +diff -Nur a/django/contrib/gis/geos/libgeos.py b/django/contrib/gis/geos/libgeos.py +--- a/django/contrib/gis/geos/libgeos.py 2020-07-09 22:34:05.331568941 +0100 ++++ b/django/contrib/gis/geos/libgeos.py 2020-07-09 22:36:24.863526276 +0100 +@@ -24,7 +24,7 @@ + from django.conf import settings + lib_path = settings.GEOS_LIBRARY_PATH + except (AttributeError, ImportError, ImproperlyConfigured, OSError): +- lib_path = None ++ lib_path = "@geos@/lib/libgeos_c@extension@" + + # Setting the appropriate names for the GEOS-C library. + if lib_path: diff --git a/pkgs/development/python-modules/django_classytags/default.nix b/pkgs/development/python-modules/django_classytags/default.nix index 9cef46173de..102e2e7cf93 100644 --- a/pkgs/development/python-modules/django_classytags/default.nix +++ b/pkgs/development/python-modules/django_classytags/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "django-classy-tags"; - version = "1.0.0"; + version = "2.0.0"; src = fetchPypi { inherit pname version; - sha256 = "1cayqddvxd5prhybqi77lif2z4j7mmfmxgc61pq9i82q5gy2asmd"; + sha256 = "d59d98bdf96a764dcf7a2929a86439d023b283a9152492811c7e44fc47555bc9"; }; propagatedBuildInputs = [ django six ]; diff --git a/pkgs/development/python-modules/docutils/default.nix b/pkgs/development/python-modules/docutils/default.nix index 8c1fb3720ca..e24a00564be 100644 --- a/pkgs/development/python-modules/docutils/default.nix +++ b/pkgs/development/python-modules/docutils/default.nix @@ -30,7 +30,7 @@ buildPythonPackage rec { ''; meta = { - description = "Docutils -- Python Documentation Utilities"; + description = "Python Documentation Utilities"; homepage = "http://docutils.sourceforge.net/"; maintainers = with lib.maintainers; [ AndersonTorres ]; }; diff --git a/pkgs/development/python-modules/dominate/default.nix b/pkgs/development/python-modules/dominate/default.nix index 7418eb4f952..3f0cca295dc 100644 --- a/pkgs/development/python-modules/dominate/default.nix +++ b/pkgs/development/python-modules/dominate/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "dominate"; - version = "2.5.2"; + version = "2.6.0"; src = fetchPypi { inherit pname version; - sha256 = "456facce7a7ccfd9363948109cf1e978d48c58e46a46b01c71b4c0adc73b1928"; + sha256 = "76ec2cde23700a6fc4fee098168b9dee43b99c2f1dd0ca6a711f683e8eb7e1e4"; }; doCheck = !isPy3k; diff --git a/pkgs/development/python-modules/drf-yasg/default.nix b/pkgs/development/python-modules/drf-yasg/default.nix index 0f5f0bc56e0..1488d938228 100644 --- a/pkgs/development/python-modules/drf-yasg/default.nix +++ b/pkgs/development/python-modules/drf-yasg/default.nix @@ -12,11 +12,11 @@ buildPythonPackage rec { pname = "drf-yasg"; - version = "1.17.1"; + version = "1.20.0"; src = fetchPypi { inherit pname version; - sha256 = "5572e9d5baab9f6b49318169df9789f7399d0e3c7bdac8fdb8dfccf1d5d2b1ca"; + sha256 = "d50f197c7f02545d0b736df88c6d5cf874f8fea2507ad85ad7de6ae5bf2d9e5a"; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dropbox/default.nix b/pkgs/development/python-modules/dropbox/default.nix index 754fe962b5a..07d13c74c8d 100644 --- a/pkgs/development/python-modules/dropbox/default.nix +++ b/pkgs/development/python-modules/dropbox/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "dropbox"; - version = "10.4.1"; + version = "10.7.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-INA50DD3wfVPItGCgywZCe5bViatUkaaGdJ0vwcEHgY="; + sha256 = "08c1e0bbc16499e0138431e34777c35ea086734ff15ee5067b0df3424df2a9ec"; }; # Set DROPBOX_TOKEN environment variable to a valid token. diff --git a/pkgs/development/python-modules/enamlx/default.nix b/pkgs/development/python-modules/enamlx/default.nix index dbf54aac40e..a9cfafa020e 100644 --- a/pkgs/development/python-modules/enamlx/default.nix +++ b/pkgs/development/python-modules/enamlx/default.nix @@ -8,13 +8,13 @@ buildPythonPackage rec { pname = "enamlx"; - version = "0.4.1"; + version = "0.4.3"; src = fetchFromGitHub { owner = "frmdstryr"; repo = pname; rev = "v${version}"; - sha256 = "0yh7bw9ibk758bym5w2wk7sifghf1hkxa8sd719q8nsz279cpfc0"; + sha256 = "1rlrx3cw6h1zl9svnqbzwdfy8469qa1y7w6576lbhdwpfhpipscy"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/entrypoint2/default.nix b/pkgs/development/python-modules/entrypoint2/default.nix index 301de3e278f..d62361e7be0 100644 --- a/pkgs/development/python-modules/entrypoint2/default.nix +++ b/pkgs/development/python-modules/entrypoint2/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "entrypoint2"; - version = "0.2.1"; + version = "0.2.3"; src = fetchPypi { inherit pname version; - sha256 = "15dya04884armqjdyqz1jgachkqgh9dc3p25lvyz9afvg73k2qav"; + sha256 = "4ac1a8f08477d93282c422faa90875ce5edaa941e1f3fd410b95cb31d9f473a7"; }; propagatedBuildInputs = [ ]; diff --git a/pkgs/development/python-modules/eve/default.nix b/pkgs/development/python-modules/eve/default.nix index 9f1fd621b8f..c50cc2aeb82 100644 --- a/pkgs/development/python-modules/eve/default.nix +++ b/pkgs/development/python-modules/eve/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "Eve"; - version = "1.1.2"; + version = "1.1.4"; src = fetchPypi { inherit pname version; - sha256 = "a8a1216ef1d3f1a4c4fc5a7bd315eca5a3ef7dfc6b78807cdf19ddfeecafcc3e"; + sha256 = "3a057277bba7144a0c15ab8c737dc8a1002e87e7284847aa011ce122e353418e"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/fastprogress/default.nix b/pkgs/development/python-modules/fastprogress/default.nix new file mode 100644 index 00000000000..a542b580565 --- /dev/null +++ b/pkgs/development/python-modules/fastprogress/default.nix @@ -0,0 +1,32 @@ +{ stdenv +, buildPythonPackage +, fetchPypi +, numpy +, pytest +, pythonOlder +}: + +buildPythonPackage rec { + pname = "fastprogress"; + version = "1.0.0"; + disabled = pythonOlder "3.6"; + + src = fetchPypi { + inherit pname version; + sha256 = "1zhv37q6jkqd1pfhlkd4yzrc3dg83vyksgzf32mjlhd5sb0qmql9"; + }; + + propagatedBuildInputs = [ numpy ]; + + # no real tests + doCheck = false; + pythonImportsCheck = [ "fastprogress" ]; + + meta = with stdenv.lib; { + homepage = "https://github.com/fastai/fastprogress"; + description = "Simple and flexible progress bar for Jupyter Notebook and console"; + license = licenses.asl20; + maintainers = with maintainers; [ ris ]; + }; + +} diff --git a/pkgs/development/python-modules/flake8-future-import/default.nix b/pkgs/development/python-modules/flake8-future-import/default.nix index e819422c572..661b7c71c33 100644 --- a/pkgs/development/python-modules/flake8-future-import/default.nix +++ b/pkgs/development/python-modules/flake8-future-import/default.nix @@ -1,4 +1,4 @@ -{ lib, isPy27, fetchFromGitHub, buildPythonPackage, pythonOlder, fetchpatch, flake8, importlib-metadata, six }: +{ lib, isPy27, isPy38, fetchFromGitHub, buildPythonPackage, pythonOlder, fetchpatch, flake8, importlib-metadata, six }: buildPythonPackage rec { pname = "flake8-future-import"; @@ -20,7 +20,8 @@ buildPythonPackage rec { # Upstream disables this test case naturally on python 3, but it also fails # inside NixPkgs for python 2. Since it's going to be deleted, we just skip it # on py2 as well. - patches = lib.optionals isPy27 [ ./skip-test.patch ]; + patches = lib.optionals isPy38 [ ./fix-annotations-version.patch ] + ++ lib.optionals isPy27 [ ./skip-test.patch ]; meta = with lib; { description = "A flake8 extension to check for the imported __future__ modules to make it easier to have a consistent code base"; diff --git a/pkgs/development/python-modules/flake8-future-import/fix-annotations-version.patch b/pkgs/development/python-modules/flake8-future-import/fix-annotations-version.patch new file mode 100644 index 00000000000..2e3062c8ac4 --- /dev/null +++ b/pkgs/development/python-modules/flake8-future-import/fix-annotations-version.patch @@ -0,0 +1,13 @@ +diff --git a/flake8_future_import.py b/flake8_future_import.py +index 92c3fda..27a1a66 100755 +--- a/flake8_future_import.py ++++ b/flake8_future_import.py +@@ -76,7 +76,7 @@ UNICODE_LITERALS = Feature(4, 'unicode_literals', (2, 6, 0), (3, 0, 0)) + GENERATOR_STOP = Feature(5, 'generator_stop', (3, 5, 0), (3, 7, 0)) + NESTED_SCOPES = Feature(6, 'nested_scopes', (2, 1, 0), (2, 2, 0)) + GENERATORS = Feature(7, 'generators', (2, 2, 0), (2, 3, 0)) +-ANNOTATIONS = Feature(8, 'annotations', (3, 7, 0), (4, 0, 0)) ++ANNOTATIONS = Feature(8, 'annotations', (3, 7, 0), (3, 10, 0)) + + + # Order important as it defines the error code diff --git a/pkgs/development/python-modules/flowlogs_reader/default.nix b/pkgs/development/python-modules/flowlogs_reader/default.nix index 44f347edb8e..717e3a3291b 100644 --- a/pkgs/development/python-modules/flowlogs_reader/default.nix +++ b/pkgs/development/python-modules/flowlogs_reader/default.nix @@ -11,12 +11,12 @@ buildPythonPackage rec { pname = "flowlogs_reader"; - version = "2.2.1"; + version = "2.3.0"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "7c24156a3d6887b641ceb37b57d91805bee6c3352e8a3ca97a3274217ead9294"; + sha256 = "19118ff77925c66a6782152066d86bc8d5c6ed60189b642263fb0c6eb7cb22ef"; }; propagatedBuildInputs = [ botocore boto3 docutils ]; diff --git a/pkgs/development/python-modules/ftputil/default.nix b/pkgs/development/python-modules/ftputil/default.nix index fb1bf7549fc..f38f5d74097 100644 --- a/pkgs/development/python-modules/ftputil/default.nix +++ b/pkgs/development/python-modules/ftputil/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, pythonOlder, pytest, freezegun }: +{ stdenv, lib, buildPythonPackage, fetchPypi, pythonOlder, pytest, freezegun }: buildPythonPackage rec { version = "4.0.0"; @@ -18,12 +18,15 @@ buildPythonPackage rec { py.test test \ -k "not test_public_servers and not test_real_ftp \ and not test_set_parser and not test_repr \ - and not test_conditional_upload and not test_conditional_download_with_older_target" - ''; + and not test_conditional_upload and not test_conditional_download_with_older_target \ + '' + # need until https://ftputil.sschwarzer.net/trac/ticket/140#ticket is fixed + + lib.optionalString stdenv.isDarwin ''and not test_error_message_reuse'' + + ''"''; meta = with lib; { description = "High-level FTP client library (virtual file system and more)"; - homepage = "http://ftputil.sschwarzer.net/"; - license = licenses.bsd2; # "Modified BSD license, says pypi" + homepage = "http://ftputil.sschwarzer.net/"; + license = licenses.bsd2; # "Modified BSD license, says pypi" }; } diff --git a/pkgs/development/python-modules/genanki/default.nix b/pkgs/development/python-modules/genanki/default.nix index b9209ba78c2..658ea3baee7 100644 --- a/pkgs/development/python-modules/genanki/default.nix +++ b/pkgs/development/python-modules/genanki/default.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { pname = "genanki"; - version = "0.8.0"; + version = "0.8.1"; src = fetchPypi { inherit pname version; - sha256 = "c7c6c276f182a63a807b52a95f197df12794ff014f48dd287cb51ca2dcbe1b34"; + sha256 = "08eddb4a203e36e4fc3b66f85e00252070379867dbbc04fd8902ddc14fb352c6"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/gntp/default.nix b/pkgs/development/python-modules/gntp/default.nix new file mode 100644 index 00000000000..cde1f9bb8ca --- /dev/null +++ b/pkgs/development/python-modules/gntp/default.nix @@ -0,0 +1,23 @@ +{ lib, buildPythonPackage, fetchPypi, nose }: + +buildPythonPackage rec { + pname = "gntp"; + version = "1.0.3"; + + src = fetchPypi { + inherit pname version; + sha256 = "1q6scs8lp84v0aph6b5c9jhv51rhq2vmzpdd38db92ybkq0g597l"; + }; + + pythonImportsCheck = [ "gntp" "gntp.notifier" ]; + + # requires a growler service to be running + doCheck = false; + + meta = with lib; { + homepage = "https://github.com/kfdm/gntp/"; + description = "Python library for working with the Growl Notification Transport Protocol"; + license = licenses.mit; + maintainers = [ maintainers.jfroche ]; + }; +} diff --git a/pkgs/development/python-modules/google-api-python-client/default.nix b/pkgs/development/python-modules/google-api-python-client/default.nix index 3ff530831b3..b074774f625 100644 --- a/pkgs/development/python-modules/google-api-python-client/default.nix +++ b/pkgs/development/python-modules/google-api-python-client/default.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { pname = "google-api-python-client"; - version = "1.12.3"; + version = "1.12.5"; src = fetchPypi { inherit pname version; - sha256 = "844ef76bda585ea0ea2d5e7f8f9a0eb10d6e2eba66c4fea0210ec7843941cb1a"; + sha256 = "0a989wynp0m1pj8qpa0mr8v8zxhazasc738nyb15wkhn1m4wv4hq"; }; # No tests included in archive diff --git a/pkgs/development/python-modules/google_cloud_bigtable/default.nix b/pkgs/development/python-modules/google_cloud_bigtable/default.nix index 91c3109e91a..310663df350 100644 --- a/pkgs/development/python-modules/google_cloud_bigtable/default.nix +++ b/pkgs/development/python-modules/google_cloud_bigtable/default.nix @@ -10,11 +10,11 @@ buildPythonPackage rec { pname = "google-cloud-bigtable"; - version = "1.4.0"; + version = "1.5.1"; src = fetchPypi { inherit pname version; - sha256 = "e777333cbe85888f888c034d32880bb6a602ad83d8c81a95edca7c522cf430d8"; + sha256 = "25b869bb20ad6ee9f6e7fc3c95d973011ade8176af9197468686335e216c088e"; }; checkInputs = [ pytest mock ]; diff --git a/pkgs/development/python-modules/google_cloud_dns/default.nix b/pkgs/development/python-modules/google_cloud_dns/default.nix index 833dfed4d6b..d488b7ad563 100644 --- a/pkgs/development/python-modules/google_cloud_dns/default.nix +++ b/pkgs/development/python-modules/google_cloud_dns/default.nix @@ -9,11 +9,11 @@ buildPythonPackage rec { pname = "google-cloud-dns"; - version = "0.32.0"; + version = "0.32.1"; src = fetchPypi { inherit pname version; - sha256 = "1shaj1x9ccwz1ad41f8hkldibpg313raqlhwky7wij4gn2nix22i"; + sha256 = "7264e58067b55535ee859e124bd3da29337698ef6bb293da667d0316ddbe8606"; }; checkInputs = [ pytest mock ]; diff --git a/pkgs/development/python-modules/google_cloud_firestore/default.nix b/pkgs/development/python-modules/google_cloud_firestore/default.nix index efc52657fd9..a5d349456fd 100644 --- a/pkgs/development/python-modules/google_cloud_firestore/default.nix +++ b/pkgs/development/python-modules/google_cloud_firestore/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "google-cloud-firestore"; - version = "1.8.1"; + version = "1.9.0"; src = fetchPypi { inherit pname version; - sha256 = "dfe02fc0a77a4e28144c46d441553352d81498ffd8f49906b57342d06c7f5b54"; + sha256 = "d8a56919a3a32c7271d1253542ec24cb13f384a726fed354fdeb2a2269f25d1c"; }; checkInputs = [ pytest ]; diff --git a/pkgs/development/python-modules/google_cloud_storage/default.nix b/pkgs/development/python-modules/google_cloud_storage/default.nix index db113962336..7a92e731042 100644 --- a/pkgs/development/python-modules/google_cloud_storage/default.nix +++ b/pkgs/development/python-modules/google_cloud_storage/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "google-cloud-storage"; - version = "1.30.0"; + version = "1.32.0"; src = fetchPypi { inherit pname version; - sha256 = "0634addb7576d48861d9963312fc82a0436042b8f282414ed58ca76d73edee54"; + sha256 = "da12b7bd79bbe978a7945a44b600604fbc10ece2935d31f243e751f99135e34f"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google_cloud_videointelligence/default.nix b/pkgs/development/python-modules/google_cloud_videointelligence/default.nix index a8da09dec64..d097132a347 100644 --- a/pkgs/development/python-modules/google_cloud_videointelligence/default.nix +++ b/pkgs/development/python-modules/google_cloud_videointelligence/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "google-cloud-videointelligence"; - version = "1.15.0"; + version = "1.16.0"; src = fetchPypi { inherit pname version; - sha256 = "c2b4b3579196c0bb7301fbe1de7008ac5081f88afc0599a10ee79a5ade385922"; + sha256 = "de6fe53bdaf66aa8e2c1f34b26af24c479a876619b5c667d009fbd9700dd89f7"; }; checkInputs = [ pytest mock ]; diff --git a/pkgs/development/python-modules/google_resumable_media/default.nix b/pkgs/development/python-modules/google_resumable_media/default.nix index 5bd95004f93..37bfbfc481b 100644 --- a/pkgs/development/python-modules/google_resumable_media/default.nix +++ b/pkgs/development/python-modules/google_resumable_media/default.nix @@ -13,11 +13,11 @@ buildPythonPackage rec { pname = "google-resumable-media"; - version = "1.0.0"; + version = "1.1.0"; src = fetchPypi { inherit pname version; - sha256 = "FzrMa63hSApSn6KcbCcXVDri3AnULpRh/bhvOVAu/PI="; + sha256 = "dcdab13e95bc534d268f87d5293e482cce5bc86dfce6ca0f2e2e89cbb73ef38c"; }; checkInputs = [ pytest mock ]; diff --git a/pkgs/development/python-modules/gphoto2/default.nix b/pkgs/development/python-modules/gphoto2/default.nix index c1008a4c8af..d5ad49f349b 100644 --- a/pkgs/development/python-modules/gphoto2/default.nix +++ b/pkgs/development/python-modules/gphoto2/default.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { pname = "gphoto2"; - version = "2.2.2"; + version = "2.2.3"; src = fetchPypi { inherit pname version; - sha256 = "0sd3w0gpnb58hg8mv20nfqf4g1plr9rkn51h088xdsd6i97r9x99"; + sha256 = "35d3ae97a9f13526746fb506de627a73328328528b436a51567fcb7e640883e9"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/development/python-modules/graspy/default.nix b/pkgs/development/python-modules/graspologic/default.nix similarity index 84% rename from pkgs/development/python-modules/graspy/default.nix rename to pkgs/development/python-modules/graspologic/default.nix index 0281e6a9734..4fd6ccf19c5 100644 --- a/pkgs/development/python-modules/graspy/default.nix +++ b/pkgs/development/python-modules/graspologic/default.nix @@ -14,14 +14,14 @@ }: buildPythonPackage rec { - pname = "graspy"; + pname = "graspologic"; version = "0.3"; disabled = isPy27; src = fetchFromGitHub { - owner = "neurodata"; - repo = pname; + owner = "microsoft"; + repo = "graspologic"; rev = "v${version}"; sha256 = "0lab76qiryxvwl6zrcikhnxil1xywl0wkkm2vzi4v9mdzpa7w29r"; }; @@ -43,7 +43,7 @@ buildPythonPackage rec { meta = with lib; { homepage = "https://graspy.neurodata.io"; description = "A package for graph statistical algorithms"; - license = licenses.asl20; + license = licenses.asl20; # changing to `licenses.mit` in next release maintainers = with maintainers; [ bcdarwin ]; }; } diff --git a/pkgs/development/python-modules/hass-nabucasa/default.nix b/pkgs/development/python-modules/hass-nabucasa/default.nix index 61c63b28ab6..6ecd9158093 100644 --- a/pkgs/development/python-modules/hass-nabucasa/default.nix +++ b/pkgs/development/python-modules/hass-nabucasa/default.nix @@ -4,13 +4,13 @@ buildPythonPackage rec { pname = "hass-nabucasa"; - version = "0.34.6"; + version = "0.37.1"; src = fetchFromGitHub { owner = "nabucasa"; repo = pname; rev = version; - sha256 = "1lkqwj58qr0vn7zf5mhrhaz973ahj9wjp4mgzvyja1gcdh6amv34"; + sha256 = "/GFNrLi1I69gUDIwnHa2q/pxkiRl9PKxpKtb56JrmuA="; }; postPatch = '' @@ -18,24 +18,12 @@ buildPythonPackage rec { sed -i 's/"cryptography.*"/"cryptography"/' setup.py ''; - patches = [ - # relax pytz dependency - (fetchpatch { - url = "https://github.com/NabuCasa/hass-nabucasa/commit/419e80feddc36c68384c032feda0057515b53eaa.patch"; - sha256 = "14dgwci8615cwcf27hg7b42s7da50xhyjys3yx446q7ipk8zw4x6"; - }) - ]; - propagatedBuildInputs = [ acme aiohttp atomicwrites snitun attrs warrant pycognito ]; checkInputs = [ pytest pytest-aiohttp asynctest ]; - # Asynctest's mocking is broken with python3.8 - # https://github.com/Martiusweb/asynctest/issues/132 - doCheck = pythonOlder "3.8"; - checkPhase = '' pytest tests/ ''; diff --git a/pkgs/development/python-modules/hdmedians/default.nix b/pkgs/development/python-modules/hdmedians/default.nix index 691e17a5a41..80e287d376f 100644 --- a/pkgs/development/python-modules/hdmedians/default.nix +++ b/pkgs/development/python-modules/hdmedians/default.nix @@ -7,12 +7,12 @@ }: buildPythonPackage rec { - version = "0.13"; + version = "0.14.1"; pname = "hdmedians"; src = fetchPypi { inherit pname version; - sha256 = "230f80e064d905c49a1941af1b7e806e2f22b3c9a90ad5c21fd17d72636ea277"; + sha256 = "ccefaae26302afd843c941b3b662f1119d5a36dec118077310f811a7a1ed8871"; }; # nose was specified in setup.py as a build dependency... diff --git a/pkgs/development/python-modules/holoviews/default.nix b/pkgs/development/python-modules/holoviews/default.nix index 796ddaace8b..4d9da17bd3a 100644 --- a/pkgs/development/python-modules/holoviews/default.nix +++ b/pkgs/development/python-modules/holoviews/default.nix @@ -15,11 +15,11 @@ buildPythonPackage rec { pname = "holoviews"; - version = "1.13.3"; + version = "1.13.5"; src = fetchPypi { inherit pname version; - sha256 = "e6753651a8598f21fc2c20e8456865ecec276cfea1519182a76d957506727934"; + sha256 = "3f8a00ce1cc67a388a3a949441accd7e7e9ca9960ba16b49ee96a50305105a01"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/howdoi/default.nix b/pkgs/development/python-modules/howdoi/default.nix index a4f1ab6b772..5b8cb6cecb9 100644 --- a/pkgs/development/python-modules/howdoi/default.nix +++ b/pkgs/development/python-modules/howdoi/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "howdoi"; - version = "2.0.5"; + version = "2.0.7"; src = fetchPypi { inherit pname version; - sha256 = "8e4d048ae7ca6182d648f62a66d07360cca2504fe46649c32748b6ef2735f7f4"; + sha256 = "09362f7390119dffd83c61a942801ad4d19aee499340ef7e8d5871167391d3d6"; }; postPatch = '' diff --git a/pkgs/development/python-modules/httpcore/default.nix b/pkgs/development/python-modules/httpcore/default.nix index 9ac9b76d2e3..aa15c2555e6 100644 --- a/pkgs/development/python-modules/httpcore/default.nix +++ b/pkgs/development/python-modules/httpcore/default.nix @@ -1,34 +1,52 @@ -{ stdenv +{ lib , buildPythonPackage +, pythonOlder , fetchFromGitHub -, isPy27 , h11 +, h2 +, pproxy +, pytestCheckHook +, pytestcov , sniffio +, uvicorn }: buildPythonPackage rec { pname = "httpcore"; - version = "0.10.2"; - disabled = isPy27; + version = "0.12.0"; + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "encode"; repo = pname; rev = version; - sha256 = "00gn8nfv814rg6fj7xv97mrra3fvx6fzjcgx9y051ihm6hxljdsi"; + sha256 = "0bwxn7m7r7h6k41swxj0jqj3nzi76wqxwbnry6y7d4qfh4m26g2j"; }; - propagatedBuildInputs = [ h11 sniffio ]; + propagatedBuildInputs = [ + h11 + h2 + sniffio + ]; + + checkInputs = [ + pproxy + pytestCheckHook + pytestcov + uvicorn + ]; + + pytestFlagsArray = [ + # these tests fail during dns lookups: httpcore.ConnectError: [Errno -2] Name or service not known + "--ignore=tests/sync_tests/test_interfaces.py" + ]; - # tests require pythonic access to mitmproxy, which isn't (yet?) packaged as - # a pythonPackage. - doCheck = false; pythonImportsCheck = [ "httpcore" ]; - meta = with stdenv.lib; { - description = "A minimal HTTP client"; + meta = with lib; { + description = "A minimal low-level HTTP client"; homepage = "https://github.com/encode/httpcore"; license = licenses.bsd3; - maintainers = [ maintainers.ris ]; + maintainers = with maintainers; [ ris ]; }; } diff --git a/pkgs/development/python-modules/httpx/default.nix b/pkgs/development/python-modules/httpx/default.nix index 5361e047207..1f527b47ec0 100644 --- a/pkgs/development/python-modules/httpx/default.nix +++ b/pkgs/development/python-modules/httpx/default.nix @@ -1,71 +1,61 @@ { lib , buildPythonPackage +, pythonOlder , fetchFromGitHub -, fetchpatch +, brotli , certifi -, chardet -, h11 , h2 , httpcore -, idna , rfc3986 , sniffio -, isPy27 -, pytest +, pytestCheckHook , pytest-asyncio , pytest-trio , pytestcov , trustme , uvicorn -, brotli }: buildPythonPackage rec { pname = "httpx"; - version = "0.14.2"; - disabled = isPy27; + version = "0.16.1"; + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "encode"; repo = pname; rev = version; - sha256 = "08b6k5g8car3bic90aw4ysb2zvsa5nm8qk3hk4dgamllnnxzl5br"; + sha256 = "00gmq45fckcqkj910bvd7pyqz1mvgsdvz4s0k7dzbnc5czzq1f4a"; }; - patches = [ - (fetchpatch { - name = "fix-cookie-test-timestamp.patch"; - url = "https://github.com/encode/httpx/pull/1270.patch"; - sha256 = "1hgrynac6226sgnyzmsr1nr15rn49gbfmk4c2kx3dwkbh6vr7jpd"; - }) - ]; - propagatedBuildInputs = [ + brotli certifi - chardet - h11 h2 httpcore - idna rfc3986 sniffio ]; checkInputs = [ - pytest + pytestCheckHook pytest-asyncio pytest-trio pytestcov trustme uvicorn - brotli ]; - checkPhase = '' - PYTHONPATH=.:$PYTHONPATH pytest -k 'not (test_connect_timeout or test_elapsed_timer)' - ''; pythonImportsCheck = [ "httpx" ]; + disabledTests = [ + # httpcore.ConnectError: [Errno 101] Network is unreachable + "test_connect_timeout" + # httpcore.ConnectError: [Errno -2] Name or service not known + "test_async_proxy_close" + "test_sync_proxy_close" + ]; + meta = with lib; { description = "The next generation HTTP client"; homepage = "https://github.com/encode/httpx"; diff --git a/pkgs/development/python-modules/identify/default.nix b/pkgs/development/python-modules/identify/default.nix index b9134ef16e3..3385e5bfc9e 100644 --- a/pkgs/development/python-modules/identify/default.nix +++ b/pkgs/development/python-modules/identify/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "identify"; - version = "1.5.5"; + version = "1.5.6"; src = fetchPypi { inherit pname version; - sha256 = "7c22c384a2c9b32c5cc891d13f923f6b2653aa83e2d75d8f79be240d6c86c4f4"; + sha256 = "969d844b7a85d32a5f9ac4e163df6e846d73c87c8b75847494ee8f4bd2186421"; }; # Tests not included in PyPI tarball diff --git a/pkgs/development/python-modules/imdbpy/default.nix b/pkgs/development/python-modules/imdbpy/default.nix new file mode 100644 index 00000000000..dea62f08009 --- /dev/null +++ b/pkgs/development/python-modules/imdbpy/default.nix @@ -0,0 +1,25 @@ +{ lib, buildPythonPackage, fetchPypi, lxml, sqlalchemy }: + +buildPythonPackage rec { + pname = "IMDbPY"; + version = "2020.9.25"; + + src = fetchPypi { + inherit pname version; + sha256 = "1p3j9j1jcgbw4626cvgpryhvczy9gzlg0laz6lflgq17m129gin2"; + }; + + patches = [ ./sql_error.patch ]; # Already fixed in master, but not yet in the current release. This can be removed upon the next version update + + propagatedBuildInputs = [ lxml sqlalchemy ]; + + doCheck = false; # Tests require networking, and https://github.com/alberanid/imdbpy/issues/240 + pythonImportsCheck = [ "imdb" ]; + + meta = with lib; { + homepage = "https://imdbpy.github.io/"; + description = "A Python package for retrieving and managing the data of the IMDb database"; + maintainers = [ maintainers.ivar ]; + license = licenses.gpl2Only; + }; +} diff --git a/pkgs/development/python-modules/imdbpy/sql_error.patch b/pkgs/development/python-modules/imdbpy/sql_error.patch new file mode 100644 index 00000000000..10770f4f113 --- /dev/null +++ b/pkgs/development/python-modules/imdbpy/sql_error.patch @@ -0,0 +1,39 @@ +diff --git a/imdb/parser/sql/__init__.py b/imdb/parser/sql/__init__.py +index cd4a3e3..3fcfdd4 100644 +--- a/imdb/parser/sql/__init__.py ++++ b/imdb/parser/sql/__init__.py +@@ -557,7 +557,6 @@ class IMDbSqlAccessSystem(IMDbBase): + """The class used to access IMDb's data through a SQL database.""" + + accessSystem = 'sql' +- _sql_logger = logging.getLogger('imdbpy.parser.sql') + + def __init__(self, uri, adultSearch=True, *arguments, **keywords): + """Initialize the access system.""" +@@ -582,7 +581,7 @@ class IMDbSqlAccessSystem(IMDbBase): + except ImportError as e: + raise IMDbError('unable to import SQLAlchemy') + # Set the connection to the database. +- self._sql_logger.debug('connecting to %s', uri) ++ logger.debug('connecting to %s', uri) + try: + self._connection = setConnection(uri, DB_TABLES) + except AssertionError as e: +@@ -593,7 +592,7 @@ class IMDbSqlAccessSystem(IMDbBase): + # Maps some IDs to the corresponding strings. + self._kind = {} + self._kindRev = {} +- self._sql_logger.debug('reading constants from the database') ++ logger.debug('reading constants from the database') + try: + for kt in KindType.select(): + self._kind[kt.id] = kt.kind +@@ -1616,7 +1615,7 @@ class IMDbSqlAccessSystem(IMDbBase): + return + if not hasattr(self, '_connection'): + return +- self._sql_logger.debug('closing connection to the database') ++ logger.debug('closing connection to the database') + try: + self._connection.close() + except: diff --git a/pkgs/development/python-modules/ipydatawidgets/default.nix b/pkgs/development/python-modules/ipydatawidgets/default.nix index 5134ffb2d6d..e6e1e605cca 100644 --- a/pkgs/development/python-modules/ipydatawidgets/default.nix +++ b/pkgs/development/python-modules/ipydatawidgets/default.nix @@ -13,13 +13,13 @@ buildPythonPackage rec { pname = "ipydatawidgets"; - version = "4.0.1"; + version = "4.1.0"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "1h7cppy959q6x5rvkdjhzxhqh57s37i2xsish5rfavcqbp2xgk4g"; + sha256 = "d9f94828c11e3b40350fb14a02e027f42670a7c372bcb30db18d552dcfab7c01"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/islpy/default.nix b/pkgs/development/python-modules/islpy/default.nix index 1d32291dff1..736588aa450 100644 --- a/pkgs/development/python-modules/islpy/default.nix +++ b/pkgs/development/python-modules/islpy/default.nix @@ -11,12 +11,12 @@ buildPythonPackage rec { pname = "islpy"; - version = "2020.2"; + version = "2020.2.2"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "ee797e1284bffe897568f9cc1f063f1a6fac8d7b87596308b7467e9b870a90ef"; + sha256 = "7eb7dfa41d6a67d9ee4ea4bb9f08bdbcbee42b364502136b7882cfd80ff427e0"; }; postConfigure = '' diff --git a/pkgs/development/python-modules/jc/default.nix b/pkgs/development/python-modules/jc/default.nix index e37f5bc7e62..cc74076b6c7 100644 --- a/pkgs/development/python-modules/jc/default.nix +++ b/pkgs/development/python-modules/jc/default.nix @@ -22,7 +22,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ ruamel_yaml xmltodict pygments ]; meta = with stdenv.lib; { - description = "This tool serializes the output of popular command line tools and filetypes to structured JSON output."; + description = "This tool serializes the output of popular command line tools and filetypes to structured JSON output"; homepage = "https://github.com/kellyjonbrazil/jc"; license = licenses.mit; maintainers = with maintainers; [ atemu ]; diff --git a/pkgs/development/python-modules/jsbeautifier/default.nix b/pkgs/development/python-modules/jsbeautifier/default.nix index f3eb0a173db..a5468fa273b 100644 --- a/pkgs/development/python-modules/jsbeautifier/default.nix +++ b/pkgs/development/python-modules/jsbeautifier/default.nix @@ -2,14 +2,14 @@ buildPythonApplication rec { pname = "jsbeautifier"; - version = "1.12.0"; + version = "1.13.0"; propagatedBuildInputs = [ six editorconfig ]; checkInputs = [ pytest ]; src = fetchPypi { inherit pname version; - sha256 = "65dea76bf2f551d7f1686111d2794506e07b6c7c477feca2124596376feb8713"; + sha256 = "f5565fbcd95f79945e124324815e586ae0d2e43df5af82a4400390e6ea789e8b"; }; meta = with lib; { diff --git a/pkgs/development/python-modules/jupyterlab-git/default.nix b/pkgs/development/python-modules/jupyterlab-git/default.nix index 91ae426147c..35fd7b8b8d8 100644 --- a/pkgs/development/python-modules/jupyterlab-git/default.nix +++ b/pkgs/development/python-modules/jupyterlab-git/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "jupyterlab_git"; - version = "0.20.0"; + version = "0.22.2"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - sha256 = "0qs3wrcils07xlz698xr7giqf9v63n2qb338mlh7wql93rmjg45i"; + sha256 = "9966a569428e67cc1688fbc2e05f51b0ceeefd8dfe30737e78a501ce3105103d"; }; propagatedBuildInputs = [ notebook nbdime git ]; diff --git a/pkgs/development/python-modules/kafka-python/default.nix b/pkgs/development/python-modules/kafka-python/default.nix index 1c85fbd29af..8069632c170 100644 --- a/pkgs/development/python-modules/kafka-python/default.nix +++ b/pkgs/development/python-modules/kafka-python/default.nix @@ -1,12 +1,12 @@ { stdenv, buildPythonPackage, fetchPypi, pytest, six, mock }: buildPythonPackage rec { - version = "2.0.1"; + version = "2.0.2"; pname = "kafka-python"; src = fetchPypi { inherit pname version; - sha256 = "1y7ny81rihnhc8lj921d76ir4kf4aj5iy35szgim8zccxhnx96p5"; + sha256 = "04dfe7fea2b63726cd6f3e79a2d86e709d608d74406638c5da33a01d45a9d7e3"; }; checkInputs = [ pytest six mock ]; diff --git a/pkgs/development/python-modules/langcodes/default.nix b/pkgs/development/python-modules/langcodes/default.nix index f5686c1afb4..f9d90e42686 100644 --- a/pkgs/development/python-modules/langcodes/default.nix +++ b/pkgs/development/python-modules/langcodes/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "langcodes"; - version = "2.0.0"; + version = "2.1.0"; disabled = pythonOlder "3.3"; src = fetchPypi { inherit pname version; - sha256 = "0xszgmydymzhb0dhx5qvdn3x5z477ld0paw17lwwhlrxffkq5jxz"; + sha256 = "75bcaca8825e1a321965b136815dee53083c63314975e024ad0ccff8545e681f"; }; propagatedBuildInputs = [ marisa-trie ]; diff --git a/pkgs/development/python-modules/libvirt/default.nix b/pkgs/development/python-modules/libvirt/default.nix index 7b1601a4122..4c0e730f7d5 100644 --- a/pkgs/development/python-modules/libvirt/default.nix +++ b/pkgs/development/python-modules/libvirt/default.nix @@ -1,13 +1,14 @@ -{ stdenv, buildPythonPackage, fetchgit, pkgconfig, lxml, libvirt, nose }: +{ stdenv, buildPythonPackage, fetchFromGitLab, pkgconfig, lxml, libvirt, nose }: buildPythonPackage rec { pname = "libvirt"; - version = "6.3.0"; + version = "6.6.0"; - src = assert version == libvirt.version; fetchgit { - url = "git://libvirt.org/libvirt-python.git"; + src = assert version == libvirt.version; fetchFromGitLab { + owner = "libvirt"; + repo = "libvirt-python"; rev = "v${version}"; - sha256 = "088cksq59jxkkzbvmwl8jw9v2k3zibwksl7j57yb51bxaa2sa1cx"; + sha256 = "0jj6b2nlx7qldwbvixz74abn3p0sq4lkf6ak74vynrv5xvlycb9v"; }; nativeBuildInputs = [ pkgconfig ]; @@ -19,7 +20,7 @@ buildPythonPackage rec { ''; meta = with stdenv.lib; { - homepage = "http://www.libvirt.org/"; + homepage = "https://libvirt.org/python.html"; description = "libvirt Python bindings"; license = licenses.lgpl2; maintainers = [ maintainers.fpletz ]; diff --git a/pkgs/development/python-modules/lightgbm/default.nix b/pkgs/development/python-modules/lightgbm/default.nix index 95dac53c97c..27b2e948776 100644 --- a/pkgs/development/python-modules/lightgbm/default.nix +++ b/pkgs/development/python-modules/lightgbm/default.nix @@ -10,11 +10,11 @@ buildPythonPackage rec { pname = "lightgbm"; - version = "2.3.1"; + version = "3.0.0"; src = fetchPypi { inherit pname version; - sha256 = "bd1817be401e74c0d8b049e97ea2f35d2ce155cfa130119ce4195ea207bd6388"; + sha256 = "05f5b358469a679dbf27521d926750ca53ff1e61a6c0293d49af30094ebd9d4a"; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/limnoria/default.nix b/pkgs/development/python-modules/limnoria/default.nix index 60fe4d86efa..a94391890b4 100644 --- a/pkgs/development/python-modules/limnoria/default.nix +++ b/pkgs/development/python-modules/limnoria/default.nix @@ -7,12 +7,12 @@ buildPythonPackage rec { pname = "limnoria"; - version = "2020.08.30"; + version = "2020.10.10"; disabled = isPy27; # abandoned upstream src = fetchPypi { inherit pname version; - sha256 = "44d81682cdf246a0324638707a2ef0819aae8c84fc0e69daaaa57cbc3f9e18e1"; + sha256 = "546fdfad14c645ebb56e20a83ce34259b91a6db5c50cf14df741771b28ac2e19"; }; patchPhase = '' diff --git a/pkgs/development/python-modules/mac_alias/default.nix b/pkgs/development/python-modules/mac_alias/default.nix index bd2a1f62390..79fd0796c24 100644 --- a/pkgs/development/python-modules/mac_alias/default.nix +++ b/pkgs/development/python-modules/mac_alias/default.nix @@ -2,12 +2,12 @@ }: buildPythonPackage rec { - version = "2.0.7"; + version = "2.1.0"; pname = "mac_alias"; src = fetchPypi { inherit pname version; - sha256 = "08z2i68mk5j0vfy8jqihjm9m6njp1lpjh1m91b60h0k0kpmy71f4"; + sha256 = "9f07926e9befcc4ab35212d19541fe0e4e4abd67a7641aa75252a3ffd8deae94"; }; # pypi package does not include tests; diff --git a/pkgs/development/python-modules/mocket/default.nix b/pkgs/development/python-modules/mocket/default.nix index 1a705ab21bc..ab9be69e58e 100644 --- a/pkgs/development/python-modules/mocket/default.nix +++ b/pkgs/development/python-modules/mocket/default.nix @@ -9,11 +9,11 @@ buildPythonPackage rec { pname = "mocket"; - version = "3.9.1"; + version = "3.9.2"; src = fetchPypi { inherit pname version; - sha256 = "1bp6642qh8fkjqgvp1vif2zbzpappbbq3sgs7vfr87inn4frc2cz"; + sha256 = "25aba0b343784b27b1d77e731ed868a728d5209911f9f4728f33088582e491c9"; }; patchPhase = '' diff --git a/pkgs/development/python-modules/mongoengine/default.nix b/pkgs/development/python-modules/mongoengine/default.nix index c1c69598cd0..a47438d5a70 100644 --- a/pkgs/development/python-modules/mongoengine/default.nix +++ b/pkgs/development/python-modules/mongoengine/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , fetchFromGitHub , pymongo +, isPy27 , six , blinker , nose @@ -11,13 +12,14 @@ buildPythonPackage rec { pname = "mongoengine"; - version = "0.18.2"; + version = "0.20.0"; + disabled = isPy27; src = fetchFromGitHub { owner = "MongoEngine"; repo = pname; rev = "v${version}"; - sha256 = "0gx091h9rcykdj233srrl3dfc0ly52p6r4qc9ah6z0f694kmqj1v"; + sha256 = "0wc0cvjanlszn09n61jj38pq9wdlphkjgrp3c8hvd16754is3n7f"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/msal-extensions/default.nix b/pkgs/development/python-modules/msal-extensions/default.nix index 6f3a8b89245..91f7ecf9667 100644 --- a/pkgs/development/python-modules/msal-extensions/default.nix +++ b/pkgs/development/python-modules/msal-extensions/default.nix @@ -1,9 +1,11 @@ { buildPythonPackage , fetchPypi , lib +, isPy27 # pythonPackages , msal +, pathlib2 , portalocker }: @@ -19,6 +21,8 @@ buildPythonPackage rec { propagatedBuildInputs = [ msal portalocker + ] ++ lib.optionals isPy27 [ + pathlib2 ]; # No tests found diff --git a/pkgs/development/python-modules/msal/default.nix b/pkgs/development/python-modules/msal/default.nix index a75560e3b55..eae7eadb7f9 100644 --- a/pkgs/development/python-modules/msal/default.nix +++ b/pkgs/development/python-modules/msal/default.nix @@ -9,11 +9,11 @@ buildPythonPackage rec { pname = "msal"; - version = "1.4.3"; + version = "1.5.0"; src = fetchPypi { inherit pname version; - sha256 = "51b8e8e0d918d9b4813f006324e7c4e21eb76268dd4c1a06d811a3475ad4ac57"; + sha256 = "cc67d3a14850ba7e533ec5d05a4c23a34dd74a7fa5e0210daebef397b2009b0e"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/myfitnesspal/default.nix b/pkgs/development/python-modules/myfitnesspal/default.nix index 53e5f825344..0638ce5d1ee 100644 --- a/pkgs/development/python-modules/myfitnesspal/default.nix +++ b/pkgs/development/python-modules/myfitnesspal/default.nix @@ -1,6 +1,9 @@ { lib, fetchPypi, buildPythonPackage -, blessed, keyring, keyrings-alt, lxml, measurement, python-dateutil, requests, six -, mock, nose }: +, blessed, keyring, keyrings-alt, lxml, measurement, python-dateutil, requests, six, rich +, pytestCheckHook, mock, nose }: + +# TODO: Define this package in "all-packages.nix" using "toPythonApplication". +# This currently errors out, complaining about not being able to find "etree" from "lxml" even though "lxml" is defined in "propagatedBuildInputs". buildPythonPackage rec { pname = "myfitnesspal"; @@ -11,14 +14,18 @@ buildPythonPackage rec { sha256 = "c2275e91c794a3569a76c47c78cf2ff04d7f569a98558227e899ead7b30af0d6"; }; - # Remove overly restrictive version constraints on keyring and keyrings.alt + # Remove overly restrictive version constraints postPatch = '' sed -i 's/keyring>=.*/keyring/' requirements.txt sed -i 's/keyrings.alt>=.*/keyrings.alt/' requirements.txt + sed -i 's/rich>=.*/rich/' requirements.txt ''; - checkInputs = [ mock nose ]; - propagatedBuildInputs = [ blessed keyring keyrings-alt lxml measurement python-dateutil requests six ]; + propagatedBuildInputs = [ blessed keyring keyrings-alt lxml measurement python-dateutil requests six rich ]; + + # Integration tests require an account to be set + disabledTests = [ "test_integration" ]; + checkInputs = [ pytestCheckHook mock nose ]; meta = with lib; { description = "Access your meal tracking data stored in MyFitnessPal programatically"; diff --git a/pkgs/development/python-modules/mysql-connector/default.nix b/pkgs/development/python-modules/mysql-connector/default.nix index 11777dbf9e6..d3465110194 100644 --- a/pkgs/development/python-modules/mysql-connector/default.nix +++ b/pkgs/development/python-modules/mysql-connector/default.nix @@ -4,13 +4,13 @@ let py = python; in buildPythonPackage rec { pname = "mysql-connector"; - version = "8.0.21"; + version = "8.0.22"; src = fetchFromGitHub { owner = "mysql"; repo = "mysql-connector-python"; rev = version; - sha256 = "0ky7rn9259807gji3fhvkmdmrgyaps431l9l9y6gh66i84kw1b3l"; + sha256 = "084q8x86ywgxgpsgdid8y9rjjys06146dqinfpmlggjswbq9kl0d"; }; propagatedBuildInputs = with py.pkgs; [ protobuf dnspython ]; diff --git a/pkgs/development/python-modules/nbclient/default.nix b/pkgs/development/python-modules/nbclient/default.nix index aa7a1ce3908..168818caf66 100644 --- a/pkgs/development/python-modules/nbclient/default.nix +++ b/pkgs/development/python-modules/nbclient/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "nbclient"; - version = "0.5.0"; + version = "0.5.1"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "8ad52d27ba144fca1402db014857e53c5a864a2f407be66ca9d74c3a56d6591d"; + sha256 = "01e2d726d16eaf2cde6db74a87e2451453547e8832d142f73f72fddcd4fe0250"; }; checkInputs = [ pytest xmltodict nbconvert ipywidgets ]; diff --git a/pkgs/development/python-modules/nbsphinx/default.nix b/pkgs/development/python-modules/nbsphinx/default.nix index f46322954f3..fb5eb6cbf7c 100644 --- a/pkgs/development/python-modules/nbsphinx/default.nix +++ b/pkgs/development/python-modules/nbsphinx/default.nix @@ -13,11 +13,11 @@ buildPythonPackage rec { pname = "nbsphinx"; - version = "0.7.1"; + version = "0.8.0"; src = fetchPypi { inherit pname version; - sha256 = "0j56bxdj08vn3q1804qwb1ywhga1mdg1awgm7i64wfpfwi8df2zm"; + sha256 = "369c16fe93af14c878d61fb3e81d838196fb35b27deade2cd7b95efe1fe56ea0"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/nibabel/default.nix b/pkgs/development/python-modules/nibabel/default.nix index b1e8a23ef8e..dc56bf956b7 100644 --- a/pkgs/development/python-modules/nibabel/default.nix +++ b/pkgs/development/python-modules/nibabel/default.nix @@ -13,12 +13,12 @@ buildPythonPackage rec { pname = "nibabel"; - version = "3.1.1"; + version = "3.2.0"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "1kir9g7kmy2qygyzczx8nj4b0sc6jjvqy0ssm39bxzqsr1vzzvxm"; + sha256 = "5827b644d1b0833603710dac198f5f8cbb9002769f97001a191e863b32f5956c"; }; propagatedBuildInputs = [ numpy scipy h5py packaging pydicom ]; diff --git a/pkgs/development/python-modules/numcodecs/default.nix b/pkgs/development/python-modules/numcodecs/default.nix index 92d049dbe6c..3857e80bbd3 100644 --- a/pkgs/development/python-modules/numcodecs/default.nix +++ b/pkgs/development/python-modules/numcodecs/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchPypi +, isPy27 , setuptools_scm , cython , numpy @@ -12,11 +13,12 @@ buildPythonPackage rec { pname = "numcodecs"; - version = "0.6.4"; + version = "0.7.2"; + disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "ef4843d5db4d074e607e9b85156835c10d006afc10e175bda62ff5412fca6e4d"; + sha256 = "4a038064d5604e6181a64db668d7b700d9ae87e4041984c04cbf0042469664b0"; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/oauthenticator/default.nix b/pkgs/development/python-modules/oauthenticator/default.nix index bf2ad31ec3d..6caaacd963b 100644 --- a/pkgs/development/python-modules/oauthenticator/default.nix +++ b/pkgs/development/python-modules/oauthenticator/default.nix @@ -16,11 +16,11 @@ buildPythonPackage rec { pname = "oauthenticator"; - version = "0.11.0"; + version = "0.12.0"; src = fetchPypi { inherit pname version; - sha256 = "ff1b4ba2458a6ee460c3c4161d780a12e94811b2daaa5d13acdb354fa21a9916"; + sha256 = "0bc5a4a0ee22689a863090993e0054485030847d0e9884afa1592ca388cccf4a"; }; checkPhase = '' diff --git a/pkgs/development/python-modules/osmpythontools/default.nix b/pkgs/development/python-modules/osmpythontools/default.nix index 1c80dd6fe55..981feb38808 100644 --- a/pkgs/development/python-modules/osmpythontools/default.nix +++ b/pkgs/development/python-modules/osmpythontools/default.nix @@ -13,12 +13,12 @@ buildPythonPackage rec { pname = "osmpythontools"; - version = "0.2.6"; + version = "0.2.8"; src = fetchPypi { pname = "OSMPythonTools"; inherit version; - sha256 = "efc72e3963971c6c7fd94bd374704a5b78eb6c07397a4ffb5f9176c1e4aee096"; + sha256 = "8a33adbd266127e342d12da755075fae08f398032a6f0909b5e86bef13960a85"; }; propagatedBuildInputs = [ @@ -32,8 +32,6 @@ buildPythonPackage rec { xarray ]; - patches = [ ./remove-unused-dependency.patch ]; - # no tests included doCheck = false; diff --git a/pkgs/development/python-modules/osmpythontools/remove-unused-dependency.patch b/pkgs/development/python-modules/osmpythontools/remove-unused-dependency.patch deleted file mode 100644 index bac80e9bd8c..00000000000 --- a/pkgs/development/python-modules/osmpythontools/remove-unused-dependency.patch +++ /dev/null @@ -1,22 +0,0 @@ -diff --git a/OSMPythonTools.egg-info/requires.txt b/OSMPythonTools.egg-info/requires.txt -index 16a5019..e58155c 100644 ---- a/OSMPythonTools.egg-info/requires.txt -+++ b/OSMPythonTools.egg-info/requires.txt -@@ -1,5 +1,4 @@ - beautifulsoup4 --datetime - geojson - lxml - matplotlib -diff --git a/setup.py b/setup.py -index 08e9455..1a6435e 100644 ---- a/setup.py -+++ b/setup.py -@@ -14,7 +14,6 @@ setup( - packages = ['OSMPythonTools', 'OSMPythonTools.internal'], - install_requires = [ - 'beautifulsoup4', -- 'datetime', - 'geojson', - 'lxml', - 'matplotlib', diff --git a/pkgs/development/python-modules/oyaml/default.nix b/pkgs/development/python-modules/oyaml/default.nix index e445086d0c7..9ea527e06f1 100644 --- a/pkgs/development/python-modules/oyaml/default.nix +++ b/pkgs/development/python-modules/oyaml/default.nix @@ -9,13 +9,13 @@ buildPythonPackage rec { pname = "oyaml"; - version = "0.9"; + version = "1.0"; src = fetchFromGitHub { owner = "wimglenn"; repo = "oyaml"; rev = "v${version}"; - sha256 = "13xjdym0p0jh9bvyjsbhi4yznlp68bamy3xi4w5wpcrzlcq6cfh9"; + sha256 = "0qkj8g87drvjqiqqmz36gyqiczdfcfv8zk96kkifzk4f9dl5f02j"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/patool/default.nix b/pkgs/development/python-modules/patool/default.nix new file mode 100644 index 00000000000..1420597a1f3 --- /dev/null +++ b/pkgs/development/python-modules/patool/default.nix @@ -0,0 +1,57 @@ +{ stdenv, lib, buildPythonPackage, fetchFromGitHub, pytestCheckHook, p7zip, + unzip, cabextract, zip, zopfli, lzip, zpaq, gnutar, gnugrep, diffutils, file, + gzip, bzip2, xz}: + +# unrar is unfree, as well as 7z with unrar support, not including it (patool doesn't support unar) + +let + compression-utilities = [ + p7zip + unzip + gnutar + cabextract + zip + zopfli + lzip + zpaq + gzip + gnugrep + diffutils + bzip2 + file + xz + ]; +in +buildPythonPackage rec { + pname = "patool"; + version = "1.12"; + + #pypi doesn't have test data + src = fetchFromGitHub { + owner = "wummel"; + repo = pname; + rev = "upstream/${version}"; + sha256 = "0v4r77sm3yzh7y1whfwxmp01cchd82jbhvbg9zsyd2yb944imzjy"; + }; + + prePatch = '' + substituteInPlace patoolib/util.py \ + --replace "path = None" 'path = append_to_path(os.environ["PATH"], "${lib.makeBinPath compression-utilities}")' + ''; + + checkInputs = [ pytestCheckHook ] ++ compression-utilities; + + disabledTests = [ + "test_unzip" + "test_unzip_file" + "test_zip" + "test_zip_file" + ]; + + meta = with lib; { + description = "portable archive file manager"; + homepage = "https://wummel.github.io/patool/"; + license = licenses.gpl3; + maintainers = with maintainers; [ marius851000 ]; + }; +} diff --git a/pkgs/development/python-modules/pc-ble-driver-py/default.nix b/pkgs/development/python-modules/pc-ble-driver-py/default.nix index 6250b5a2202..64430ca7e1f 100644 --- a/pkgs/development/python-modules/pc-ble-driver-py/default.nix +++ b/pkgs/development/python-modules/pc-ble-driver-py/default.nix @@ -1,9 +1,10 @@ -{ stdenv, fetchFromGitHub, cmake, git, swig, boost, udev, pc-ble-driver +{ stdenv, fetchFromGitHub, cmake, git, swig, boost, udev, pc-ble-driver, pythonOlder , buildPythonPackage, enum34, wrapt, future, setuptools, scikit-build }: buildPythonPackage rec { pname = "pc-ble-driver-py"; version = "0.14.2"; + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "NordicSemiconductor"; diff --git a/pkgs/development/python-modules/pdfminer_six/default.nix b/pkgs/development/python-modules/pdfminer_six/default.nix index 08f482e6221..9bc8f891570 100644 --- a/pkgs/development/python-modules/pdfminer_six/default.nix +++ b/pkgs/development/python-modules/pdfminer_six/default.nix @@ -2,7 +2,7 @@ buildPythonPackage rec { pname = "pdfminer_six"; - version = "20200726"; + version = "20201018"; disabled = !isPy3k; @@ -11,7 +11,7 @@ buildPythonPackage rec { owner = "pdfminer"; repo = "pdfminer.six"; rev = version; - sha256 = "1hlaz7ax1czb028x3nhk3l2jy07f26q5hbhmdirljaaga24vd96z"; + sha256 = "1a2fxxnnjqbx344znpvx7cnv1881dk6585ibw01inhfq3w6yj2lr"; }; propagatedBuildInputs = [ chardet cryptography sortedcontainers ]; diff --git a/pkgs/development/python-modules/phonenumbers/default.nix b/pkgs/development/python-modules/phonenumbers/default.nix index 8693901c93e..e4cb59f5b93 100644 --- a/pkgs/development/python-modules/phonenumbers/default.nix +++ b/pkgs/development/python-modules/phonenumbers/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "phonenumbers"; - version = "8.12.10"; + version = "8.12.11"; src = fetchPypi { inherit pname version; - sha256 = "d6e108352e7113c55cf0d92f8aede876a379580e46a3b9c2e779dc3601f11863"; + sha256 = "17f39f06c1e0e20eabe69ff735b1c08e4547d12a12595da3d835fd3256a9ee0c"; }; meta = { diff --git a/pkgs/development/python-modules/phonopy/default.nix b/pkgs/development/python-modules/phonopy/default.nix index b476543c06a..1a768b7cf57 100644 --- a/pkgs/development/python-modules/phonopy/default.nix +++ b/pkgs/development/python-modules/phonopy/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "phonopy"; - version = "2.7.1"; + version = "2.8.1"; src = fetchPypi { inherit pname version; - sha256 = "482c6ff29c058d091ac885e561e28ba3e516ea9e91c44a951cad11f3ae19856c"; + sha256 = "28864b04adb900597705f1367a100da869af835088bdd13f1693c4382259f128"; }; propagatedBuildInputs = [ numpy pyyaml matplotlib h5py spglib ]; diff --git a/pkgs/development/python-modules/pinboard/default.nix b/pkgs/development/python-modules/pinboard/default.nix new file mode 100644 index 00000000000..af144e0a866 --- /dev/null +++ b/pkgs/development/python-modules/pinboard/default.nix @@ -0,0 +1,23 @@ +{ lib, buildPythonPackage, fetchFromGitHub }: + +buildPythonPackage rec { + pname = "pinboard"; + version = "2.1.8"; + + src = fetchFromGitHub { + owner = "lionheart"; + repo = pname; + rev = version; + sha256 = "0ppc3vwv48ahqx6n5c7d7066zhi31cjdik0ma9chq6fscq2idgdf"; + }; + + # tests require an API key + doCheck = false; + + meta = with lib; { + description = "A Python wrapper for Pinboard.in"; + maintainers = with maintainers; [ djanatyn ]; + license = licenses.asl20; + homepage = "http://github.com/lionheart/pinboard.py"; + }; +} diff --git a/pkgs/development/python-modules/plexwebsocket/default.nix b/pkgs/development/python-modules/plexwebsocket/default.nix index 383a37cee3f..47e7778fc0f 100644 --- a/pkgs/development/python-modules/plexwebsocket/default.nix +++ b/pkgs/development/python-modules/plexwebsocket/default.nix @@ -2,14 +2,14 @@ buildPythonPackage rec { pname = "plexwebsocket"; - version = "0.0.6"; + version = "0.0.12"; disabled = isPy27; src = fetchFromGitHub { owner = "jjlawren"; repo = "python-plexwebsocket"; rev = "v${version}"; - sha256 = "1sy9khxksimcmdvghg1ksk65mkiihjvhi7m7ms2kzmy7mrg3s3i7"; + sha256 = "1xdzb268c71yb25a5mk4g2jrbq4dv8bynfirs7p4n8a51p030dz6"; }; propagatedBuildInputs = [ aiohttp ]; diff --git a/pkgs/development/python-modules/plone-testing/default.nix b/pkgs/development/python-modules/plone-testing/default.nix index 825fcc86dc0..c951800454d 100644 --- a/pkgs/development/python-modules/plone-testing/default.nix +++ b/pkgs/development/python-modules/plone-testing/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "plone.testing"; - version = "8.0.1"; + version = "8.0.2"; src = fetchPypi { inherit pname version; - sha256 = "e079c87f821cf2e411826940e65577a88e08827cf9a2b771070f2917a439b642"; + sha256 = "082b03aebe81d0bdcc44a917a795ae60d3add2c2abbee11e7c335fb13d5e7ca7"; }; propagatedBuildInputs = [ six setuptools zope_testing ]; diff --git a/pkgs/development/python-modules/posix_ipc/default.nix b/pkgs/development/python-modules/posix_ipc/default.nix index adde770bbc4..2be2a89cc6d 100644 --- a/pkgs/development/python-modules/posix_ipc/default.nix +++ b/pkgs/development/python-modules/posix_ipc/default.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { pname = "posix_ipc"; - version = "1.0.4"; + version = "1.0.5"; src = fetchPypi { inherit pname version; - sha256 = "ff6c9077633fc62a491d6997c43b094d885bb45a7ca1f36c9a0d647c54b74b14"; + sha256 = "6cddb1ce2cf4aae383f2a0079c26c69bee257fe2720f372201ef047f8ceb8b97"; }; meta = with stdenv.lib; { diff --git a/pkgs/development/python-modules/pq/default.nix b/pkgs/development/python-modules/pq/default.nix index cfc5419bd23..ff1433725fc 100644 --- a/pkgs/development/python-modules/pq/default.nix +++ b/pkgs/development/python-modules/pq/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "pq"; - version = "1.8.2"; + version = "1.9.0"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "f54143844e73f4182532e68548dee447dd78dd00310a087e8cdee756d476a173"; + sha256 = "c664ee3a9a25efcb583e3d1d797588fb7c2fb5096220689eec78a7946b01b5ff"; }; # tests require running postgresql cluster @@ -20,7 +20,7 @@ buildPythonPackage rec { meta = with lib; { description = "PQ is a transactional queue for PostgreSQL"; - homepage = https://github.com/malthe/pq/; + homepage = "https://github.com/malthe/pq/"; license = licenses.bsd3; maintainers = [ maintainers.costrouc ]; }; diff --git a/pkgs/development/python-modules/protobuf/default.nix b/pkgs/development/python-modules/protobuf/default.nix index 7f66549893b..ab95eeb51f9 100644 --- a/pkgs/development/python-modules/protobuf/default.nix +++ b/pkgs/development/python-modules/protobuf/default.nix @@ -1,11 +1,11 @@ -{ stdenv, fetchpatch, python, buildPythonPackage, isPy37 +{ buildPackages, stdenv, fetchpatch, python, buildPythonPackage, isPy37 , protobuf, google_apputils, pyext, libcxx, isPy27 , disabled, doCheck ? true }: with stdenv.lib; buildPythonPackage { - inherit (protobuf) name src version; + inherit (protobuf) pname src version; inherit disabled; doCheck = doCheck && !isPy27; # setuptools>=41.4 no longer collects correctly on python2 @@ -15,8 +15,10 @@ buildPythonPackage { ++ optional (versionOlder protobuf.version "2.7.0") "-std=c++98" ); + outputs = [ "out" "dev" ]; + propagatedBuildInputs = [ google_apputils ]; - propagatedNativeBuildInputs = [ protobuf ]; # For protoc. + propagatedNativeBuildInputs = [ buildPackages.protobuf ]; # For protoc. nativeBuildInputs = [ google_apputils pyext ]; buildInputs = [ protobuf ]; @@ -43,9 +45,9 @@ buildPythonPackage { preBuild = '' # Workaround for https://github.com/google/protobuf/issues/2895 - ${python.interpreter} setup.py build + ${python.pythonForBuild.interpreter} setup.py build '' + optionalString (versionAtLeast protobuf.version "2.6.0") '' - ${python.interpreter} setup.py build_ext --cpp_implementation + ${python.pythonForBuild.interpreter} setup.py build_ext --cpp_implementation ''; installFlags = optional (versionAtLeast protobuf.version "2.6.0") diff --git a/pkgs/development/python-modules/pulp/default.nix b/pkgs/development/python-modules/pulp/default.nix index a98c7a518d2..73d367f5eb1 100644 --- a/pkgs/development/python-modules/pulp/default.nix +++ b/pkgs/development/python-modules/pulp/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "PuLP"; - version = "2.3"; + version = "2.3.1"; src = fetchPypi { inherit pname version; - sha256 = "9d8ecf532868cc31fa9ff59ee5d5b2049600c5c902c18c794a2bad677c1f92e5"; + sha256 = "5bbe53f854fb3b689e4faacac5bdb5fa576cb270fc12c78edef827dd46a4fb50"; }; propagatedBuildInputs = [ pyparsing amply ]; diff --git a/pkgs/development/python-modules/pwntools/default.nix b/pkgs/development/python-modules/pwntools/default.nix index 623140546e1..fa4e4cc9419 100644 --- a/pkgs/development/python-modules/pwntools/default.nix +++ b/pkgs/development/python-modules/pwntools/default.nix @@ -24,12 +24,12 @@ }: buildPythonPackage rec { - version = "4.2.1"; + version = "4.2.2"; pname = "pwntools"; src = fetchPypi { inherit pname version; - sha256 = "1fh7sq9wrcfvn44qryln9cyg99pilvyq9bp80758lgdd6ss6hdqd"; + sha256 = "0iv802v67x2fy35q7m27j6xnz94l3w509z8c1286schgav1dw7f4"; }; # Upstream has set an upper bound on unicorn because of https://github.com/Gallopsled/pwntools/issues/1538, diff --git a/pkgs/development/python-modules/py-multibase/default.nix b/pkgs/development/python-modules/py-multibase/default.nix index c304e68fd8d..b229361917f 100644 --- a/pkgs/development/python-modules/py-multibase/default.nix +++ b/pkgs/development/python-modules/py-multibase/default.nix @@ -10,12 +10,12 @@ }: buildPythonPackage rec { pname = "py-multibase"; - version = "1.0.1"; + version = "1.0.3"; disabled = isPy27; src = fetchPypi { inherit pname version ; - sha256 = "6ed706ea321b487ba82e4172a9c82d61dacd675c865f576a937a94bca1a23443"; + sha256 = "d28a20efcbb61eec28f55827a0bf329c7cea80fffd933aecaea6ae8431267fe4"; }; postPatch = '' diff --git a/pkgs/development/python-modules/py_stringmatching/default.nix b/pkgs/development/python-modules/py_stringmatching/default.nix index fda497b7962..79d09daba9c 100644 --- a/pkgs/development/python-modules/py_stringmatching/default.nix +++ b/pkgs/development/python-modules/py_stringmatching/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "py_stringmatching"; - version = "0.4.1"; + version = "0.4.2"; src = fetchPypi { inherit pname version; - sha256 = "c46db1e855cef596dfbbe1bd48fcabb30736479eff602c2bf88af10f998f1532"; + sha256 = "c87f62698fba1612a18f8f44bd57f0c4e70aac2d7ca6dfb6ed46dabd2194453c"; }; checkInputs = [ nose ]; diff --git a/pkgs/development/python-modules/pyaftership/default.nix b/pkgs/development/python-modules/pyaftership/default.nix new file mode 100644 index 00000000000..4deee467f84 --- /dev/null +++ b/pkgs/development/python-modules/pyaftership/default.nix @@ -0,0 +1,26 @@ +{ aiohttp, async-timeout, buildPythonPackage, fetchPypi, isPy3k, lib }: + +buildPythonPackage rec { + pname = "pyaftership"; + version = "0.1.2"; + + disabled = !isPy3k; + + src = fetchPypi { + inherit pname version; + sha256 = "057dwzacc0lmsq00ipfbnxkq4rc2by8glmza6s8i6dzi1cc68v98"; + }; + + propagatedBuildInputs = [ aiohttp async-timeout ]; + + # No tests + doCheck = false; + pythonImportsCheck = [ "pyaftership.tracker" ]; + + meta = with lib; { + description = "Python wrapper package for the AfterShip API"; + homepage = "https://github.com/ludeeus/pyaftership"; + license = licenses.mit; + maintainers = with maintainers; [ jamiemagee ]; + }; +} diff --git a/pkgs/development/python-modules/pyatv/default.nix b/pkgs/development/python-modules/pyatv/default.nix index 8d6da02e5f1..adec3bd07b3 100644 --- a/pkgs/development/python-modules/pyatv/default.nix +++ b/pkgs/development/python-modules/pyatv/default.nix @@ -1,4 +1,4 @@ -{ stdenv, buildPythonPackage, fetchPypi +{ stdenv, buildPythonPackage , aiohttp , aiozeroconf , asynctest @@ -11,15 +11,19 @@ , pytest-asyncio , pytestrunner , srptools +, zeroconf +, fetchFromGitHub +, pytestCheckHook }: buildPythonPackage rec { pname = "pyatv"; - version = "0.7.2"; - - src = fetchPypi { - inherit pname version; - sha256 = "83d86fac517d33a1e3063a547ee2a520fde74c74a1b95cb5a6f20afccfd59843"; + version = "0.7.4"; + src = fetchFromGitHub { + owner = "postlund"; + repo = pname; + rev = "v${version}"; + sha256 = "17gsamn4aibsx4w50r9dwr5kr9anc7dd0f0dvmdl717rkgh13zyi"; }; nativeBuildInputs = [ pytestrunner]; @@ -31,6 +35,7 @@ buildPythonPackage rec { protobuf cryptography netifaces + zeroconf ]; checkInputs = [ @@ -38,13 +43,9 @@ buildPythonPackage rec { pytest pytest-aiohttp pytest-asyncio + pytestCheckHook ]; - # just run vanilla pytest to avoid inclusion of coverage reports and xdist - checkPhase = '' - pytest - ''; - meta = with stdenv.lib; { description = "A python client library for the Apple TV"; homepage = "https://github.com/postlund/pyatv"; diff --git a/pkgs/development/python-modules/pybullet/default.nix b/pkgs/development/python-modules/pybullet/default.nix index 9d889214e34..8cc9d173e0f 100644 --- a/pkgs/development/python-modules/pybullet/default.nix +++ b/pkgs/development/python-modules/pybullet/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "pybullet"; - version = "2.8.7"; + version = "3.0.6"; src = fetchPypi { inherit pname version; - sha256 = "9d3a8bdc9b4acce086c485ba719aabee33de7a867d84a058b182b139c789ad55"; + sha256 = "db4eea782c4d4808ef73b305a729d94f89035f7ad1b84032432e9dd101f689e4"; }; buildInputs = [ diff --git a/pkgs/development/python-modules/pycognito/default.nix b/pkgs/development/python-modules/pycognito/default.nix index 8101b76b62c..a30c1cd344b 100644 --- a/pkgs/development/python-modules/pycognito/default.nix +++ b/pkgs/development/python-modules/pycognito/default.nix @@ -12,13 +12,13 @@ buildPythonPackage rec { pname = "pycognito"; - version = "0.1.3"; + version = "0.1.4"; src = fetchFromGitHub { owner = "pvizeli"; repo = "pycognito"; rev = version; - sha256 = "0wy6d274xda7v6dazv10h2vwig2avfyz8mh2lpd1a5k7i06r335r"; + sha256 = "HLzPrRon+ipcUZlD1l4nYSwSbdDLwOALy4ejGunjK0w="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pycuda/default.nix b/pkgs/development/python-modules/pycuda/default.nix index b9a75734b8e..3876485dd96 100644 --- a/pkgs/development/python-modules/pycuda/default.nix +++ b/pkgs/development/python-modules/pycuda/default.nix @@ -21,11 +21,11 @@ let in buildPythonPackage rec { pname = "pycuda"; - version = "2019.1.2"; + version = "2020.1"; src = fetchPypi { inherit pname version; - sha256 = "ada56ce98a41f9f95fe18809f38afbae473a5c62d346cfa126a2d5477f24cc8a"; + sha256 = "effa3b99b55af67f3afba9b0d1b64b4a0add4dd6a33bdd6786df1aa4cc8761a5"; }; preConfigure = with stdenv.lib.versions; '' diff --git a/pkgs/development/python-modules/pyexcel-io/default.nix b/pkgs/development/python-modules/pyexcel-io/default.nix index 8a788402b49..6fe2245385a 100644 --- a/pkgs/development/python-modules/pyexcel-io/default.nix +++ b/pkgs/development/python-modules/pyexcel-io/default.nix @@ -2,15 +2,18 @@ , buildPythonPackage , fetchPypi , lml +, isPy3k }: buildPythonPackage rec { pname = "pyexcel-io"; - version = "0.5.20"; + version = "0.6.3"; + + disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "CN/jlVO5ljWbFD3j2exD4ZbxE41HyrtzrwShaCG4TXk="; + sha256 = "8fb7a201eb3e5763bb8f9d6e096ceed9e5f1baecd784c9fadbe0fb3d59174c0e"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyexcel-ods/default.nix b/pkgs/development/python-modules/pyexcel-ods/default.nix index 9e5b32ea867..b923932ec57 100644 --- a/pkgs/development/python-modules/pyexcel-ods/default.nix +++ b/pkgs/development/python-modules/pyexcel-ods/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "pyexcel-ods"; - version = "0.5.6"; + version = "0.6.0"; src = fetchPypi { inherit pname version; - sha256 = "O+Uv2KrdvYvJKG9+sUj0VT1MlyUtaVw6nse5XmZmoiM="; + sha256 = "f61b56515fd4ccd4687f0a112422f74ce8535247ad2da49db90038d7e3ed397c"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyexcel-xls/default.nix b/pkgs/development/python-modules/pyexcel-xls/default.nix index 2dd4533c2a9..418dfbf42f8 100644 --- a/pkgs/development/python-modules/pyexcel-xls/default.nix +++ b/pkgs/development/python-modules/pyexcel-xls/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "pyexcel-xls"; - version = "0.5.9"; + version = "0.6.0"; src = fetchPypi { inherit pname version; - sha256 = "1Wyt6gpmBoRFaXbZgFJVTTu+KnivxfmpHIaR9iZghVU="; + sha256 = "64bac180274c52efe970c664d3e8bb12402c9d10e0734d9fe87655646a876c45"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyexcel/default.nix b/pkgs/development/python-modules/pyexcel/default.nix index 71219c32ae5..d62302c9c23 100644 --- a/pkgs/development/python-modules/pyexcel/default.nix +++ b/pkgs/development/python-modules/pyexcel/default.nix @@ -1,7 +1,7 @@ { lib , buildPythonPackage , fetchPypi -, isPy27 +, isPy3k , lml , pyexcel-io , texttable @@ -10,12 +10,13 @@ buildPythonPackage rec { pname = "pyexcel"; - version = "0.6.4"; - disabled = isPy27; + version = "0.6.5"; + + disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "pPNYnimHhW7SL6X6OLwagZoadTD7IdUSbO7vAqQPQu8="; + sha256 = "36588573ccb1c86e1a8869e1e9f6b31975a38c13803f015a197c18efd2e685ad"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyface/default.nix b/pkgs/development/python-modules/pyface/default.nix index 284b8f0837a..68afbafef30 100644 --- a/pkgs/development/python-modules/pyface/default.nix +++ b/pkgs/development/python-modules/pyface/default.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { pname = "pyface"; - version = "7.0.1"; + version = "7.1.0"; src = fetchPypi { inherit pname version; - sha256 = "43943cc15889153b90191d9e1bd85e7a3709a6d57b6379220cb14017217fb999"; + sha256 = "a3e22a4d31429f0d5b9ff50aaac3fb47e4f7da678b6b0439a7b91ef40675f88d"; }; propagatedBuildInputs = [ setuptools six traits ]; diff --git a/pkgs/development/python-modules/pygmt/default.nix b/pkgs/development/python-modules/pygmt/default.nix new file mode 100644 index 00000000000..378419cc835 --- /dev/null +++ b/pkgs/development/python-modules/pygmt/default.nix @@ -0,0 +1,45 @@ +{ lib +, pythonOlder +, buildPythonPackage +, fetchFromGitHub +, gmt +, numpy +, netcdf4 +, pandas +, packaging +, xarray +}: + +buildPythonPackage rec { + pname = "pygmt"; + version = "0.2.0"; + + disabled = pythonOlder "3.6"; + + src = fetchFromGitHub { + owner = "GenericMappingTools"; + repo = "pygmt"; + rev = "v${version}"; + sha256 = "1yx1n6mxfmwg69ls5560nm6d3jxyghv27981iplz7m7990bbp468"; + }; + + postPatch = '' + substituteInPlace pygmt/clib/loading.py \ + --replace "env.get(\"GMT_LIBRARY_PATH\", \"\")" "env.get(\"GMT_LIBRARY_PATH\", \"${gmt}/lib\")" + ''; + + propagatedBuildInputs = [ numpy netcdf4 pandas packaging xarray ]; + + doCheck = false; # requires network access + + postBuild = "export HOME=$TMP"; + + pythonImportsCheck = [ "pygmt" ]; + + meta = with lib; { + description = "A Python interface for the Generic Mapping Tools"; + homepage = "https://github.com/GenericMappingTools/pygmt"; + license = licenses.bsd3; + maintainers = with maintainers; [ sikmir ]; + }; +} diff --git a/pkgs/development/python-modules/pylast/default.nix b/pkgs/development/python-modules/pylast/default.nix index 10449717ea4..12fac476f63 100644 --- a/pkgs/development/python-modules/pylast/default.nix +++ b/pkgs/development/python-modules/pylast/default.nix @@ -4,13 +4,13 @@ buildPythonPackage rec { pname = "pylast"; - version = "3.3.0"; + version = "4.0.0"; disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "1wqd23bbk5si2mcmswsi486zqnydjjf8g7924gcz6cc1x036lasd"; + sha256 = "8ec555d6c4c1b474e9b3c96c3786abd38303a1a5716d928b0f3cfdcb4499b093"; }; nativeBuildInputs = [ setuptools_scm ]; diff --git a/pkgs/development/python-modules/pymavlink/default.nix b/pkgs/development/python-modules/pymavlink/default.nix index 0522e0791fc..b401f1f90b1 100644 --- a/pkgs/development/python-modules/pymavlink/default.nix +++ b/pkgs/development/python-modules/pymavlink/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "pymavlink"; - version = "2.4.9"; + version = "2.4.11"; src = fetchPypi { inherit pname version; - sha256 = "6049f270aa0a1013c7dcd32b9f4756d79b6a2ccf73babeca2c46b9e391e644fe"; + sha256 = "0b1265b169f809c6ca94911ad2d7649b8e087a7cc573a0a6ea62ade9bea7ca5c"; }; propagatedBuildInputs = [ future lxml ]; diff --git a/pkgs/development/python-modules/pymc3/default.nix b/pkgs/development/python-modules/pymc3/default.nix index bda74c5063a..dfbfe90d242 100644 --- a/pkgs/development/python-modules/pymc3/default.nix +++ b/pkgs/development/python-modules/pymc3/default.nix @@ -14,6 +14,8 @@ , pytest , nose , parameterized +, fastprogress +, typing-extensions }: buildPythonPackage rec { @@ -41,6 +43,8 @@ buildPythonPackage rec { h5py arviz packaging + fastprogress + typing-extensions ]; checkInputs = [ @@ -52,6 +56,7 @@ buildPythonPackage rec { # The test suite is computationally intensive and test failures are not # indicative for package usability hence tests are disabled by default. doCheck = false; + pythonImportsCheck = [ "pymc3" ]; # For some reason tests are run as a part of the *install* phase if enabled. # Theano writes compiled code to ~/.theano hence we set $HOME. diff --git a/pkgs/development/python-modules/pympler/default.nix b/pkgs/development/python-modules/pympler/default.nix index 0fc04942655..f80c91e8f2d 100644 --- a/pkgs/development/python-modules/pympler/default.nix +++ b/pkgs/development/python-modules/pympler/default.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { pname = "Pympler"; - version = "0.8"; + version = "0.9"; src = fetchPypi { inherit pname version; - sha256 = "08mrpnb6cv2nvfncvr8a9a8bpwhnasa924anapnjvnaw5jcd4k7p"; + sha256 = "f2cbe7df622117af890249f2dea884eb702108a12d729d264b7c5983a6e06e47"; }; postPatch = '' diff --git a/pkgs/development/python-modules/pynacl/default.nix b/pkgs/development/python-modules/pynacl/default.nix index 78fe9672a8b..5ce85acc194 100644 --- a/pkgs/development/python-modules/pynacl/default.nix +++ b/pkgs/development/python-modules/pynacl/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "pynacl"; - version = "1.3.0"; + version = "1.4.0"; src = fetchPypi { inherit version; pname = "PyNaCl"; - sha256 = "0c6100edd16fefd1557da078c7a31e7b7d7a52ce39fdca2bec29d4f7b6e7600c"; + sha256 = "01b56hxrbif3hx8l6rwz5kljrgvlbj7shmmd2rjh0hn7974a5sal"; }; checkInputs = [ pytest hypothesis_4 ]; @@ -24,20 +24,10 @@ buildPythonPackage rec { SODIUM_INSTALL = "system"; - # fixed in next release 1.3.0+ - # https://github.com/pyca/pynacl/pull/480 - postPatch = '' - substituteInPlace tests/test_bindings.py \ - --replace "average_size=128," "" - ''; - checkPhase = '' py.test ''; - # https://github.com/pyca/pynacl/issues/550 - PYTEST_ADDOPTS = "-k 'not test_wrong_types'"; - meta = with stdenv.lib; { maintainers = with maintainers; [ va1entin ]; description = "Python binding to the Networking and Cryptography (NaCl) library"; diff --git a/pkgs/development/python-modules/pyobjc/default.nix b/pkgs/development/python-modules/pyobjc/default.nix index d66425fa369..a9acf1e5586 100644 --- a/pkgs/development/python-modules/pyobjc/default.nix +++ b/pkgs/development/python-modules/pyobjc/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { meta = { description = "A bridge between the Python and Objective-C programming languages"; license = stdenv.lib.licenses.mit; - maintainers = with stdenv.lib.maintainers; [ sauyon ]; + maintainers = with stdenv.lib.maintainers; [ ]; homepage = "https://pythonhosted.org/pyobjc/"; }; } diff --git a/pkgs/development/python-modules/pyotp/default.nix b/pkgs/development/python-modules/pyotp/default.nix index 1a3d674779b..310ad95808a 100644 --- a/pkgs/development/python-modules/pyotp/default.nix +++ b/pkgs/development/python-modules/pyotp/default.nix @@ -1,14 +1,17 @@ -{ lib, buildPythonPackage, fetchPypi }: +{ lib, buildPythonPackage, fetchPypi, isPy27 }: buildPythonPackage rec { pname = "pyotp"; version = "2.4.0"; + disabled = isPy27; src = fetchPypi { inherit pname version; sha256 = "01eceab573181188fe038d001e42777884a7f5367203080ef5bda0e30fe82d28"; }; + pythonImportsCheck = [ "pyotp" ]; + meta = with lib; { description = "Python One Time Password Library"; homepage = "https://github.com/pyotp/pyotp"; diff --git a/pkgs/development/python-modules/pyowm/default.nix b/pkgs/development/python-modules/pyowm/default.nix index 04e683ee6e0..423d38ab25d 100644 --- a/pkgs/development/python-modules/pyowm/default.nix +++ b/pkgs/development/python-modules/pyowm/default.nix @@ -2,13 +2,13 @@ buildPythonPackage rec { pname = "pyowm"; - version = "3.0.0"; + version = "3.1.1"; disabled = pythonOlder "3.3"; src = fetchPypi { inherit pname version; - sha256 = "f06ac5f2356f0964f088b1f840a6d382499054bd18539ffb1e7c84f29c2c39b6"; + sha256 = "a7b18297a9189dbe5f6b454b12d61a407e35c7eb9ca75bcabfe5e1c83245290d"; }; propagatedBuildInputs = [ requests geojson ]; diff --git a/pkgs/development/python-modules/pypblib/default.nix b/pkgs/development/python-modules/pypblib/default.nix new file mode 100644 index 00000000000..4cf8d5fc7b6 --- /dev/null +++ b/pkgs/development/python-modules/pypblib/default.nix @@ -0,0 +1,20 @@ +{ lib, buildPythonPackage, fetchPypi }: + +buildPythonPackage rec { + pname = "pypblib"; + version = "0.0.4"; + + src = fetchPypi { + inherit pname version; + sha256 = "0qlhykm9flj6cv3v0b9q40gy21yz0lnp0wxlxvb3ijkpy45r7pbi"; + }; + + pythonImportsCheck = [ "pypblib" ]; + + meta = with lib; { + homepage = "https://pypi.org/project/pypblib/"; + description = "PBLib Python3 Bindings"; + license = licenses.mit; + maintainers = [ maintainers.marius851000 ]; + }; +} diff --git a/pkgs/development/python-modules/pysam/default.nix b/pkgs/development/python-modules/pysam/default.nix index 38b55c4563d..2802b6d0e0f 100644 --- a/pkgs/development/python-modules/pysam/default.nix +++ b/pkgs/development/python-modules/pysam/default.nix @@ -6,6 +6,7 @@ , curl , cython , htslib +, libdeflate , lzma , pytest , samtools @@ -14,7 +15,7 @@ buildPythonPackage rec { pname = "pysam"; - version = "0.15.4"; + version = "0.16.0.1"; # Fetching from GitHub instead of PyPi cause the 0.13 src release on PyPi is # missing some files which cause test failures. @@ -23,26 +24,76 @@ buildPythonPackage rec { owner = "pysam-developers"; repo = "pysam"; rev = "v${version}"; - sha256 = "04w6h6mv6lsr74hj9gy4r2laifcbhgl2bjcr4r1l9r73xdd45mdy"; + sha256 = "168bwwm8c2k22m7paip8q0yajyl7xdxgnik0bgjl7rhqg0majz0f"; }; nativeBuildInputs = [ samtools ]; - buildInputs = [ bzip2 curl cython lzma zlib ]; + buildInputs = [ + bzip2 + curl + cython + libdeflate + lzma + zlib + ]; - checkInputs = [ pytest bcftools htslib ]; - checkPhase = "py.test"; + # Use nixpkgs' htslib instead of the bundled one + # See https://pysam.readthedocs.io/en/latest/installation.html#external + # NOTE that htslib should be version compatible with pysam + preBuild = '' + export HTSLIB_MODE=shared + export HTSLIB_LIBRARY_DIR=${htslib}/lib + export HTSLIB_INCLUDE_DIR=${htslib}/include + ''; - # tests require samtools<=1.9 - doCheck = false; - preCheck = '' + checkInputs = [ + pytest + bcftools + htslib + ]; + + # See https://github.com/NixOS/nixpkgs/pull/100823 for why we aren't using + # disabledTests and pytestFlagsArray through pytestCheckHook + checkPhase = '' + # Needed to avoid /homeless-shelter error export HOME=$(mktemp -d) + + # To avoid API incompatibilities, these should ideally show the same version + echo "> samtools --version" + samtools --version + echo "> htsfile --version" + htsfile --version + echo "> bcftools --version" + bcftools --version + + # Create auxiliary test data make -C tests/pysam_data make -C tests/cbcf_data + + # Delete pysam folder in current directory to avoid importing it during testing + rm -rf pysam + + # Deselect tests that are known to fail due to upstream issues + # See https://github.com/pysam-developers/pysam/issues/961 + py.test \ + --deselect tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_dictionary_access_works \ + --deselect tests/AlignmentFileHeader_test.py::TestHeaderBAM::test_header_content_is_as_expected \ + --deselect tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_dictionary_access_works \ + --deselect tests/AlignmentFileHeader_test.py::TestHeaderCRAM::test_header_content_is_as_expected \ + --deselect tests/AlignmentFile_test.py::TestIO::testBAM2SAM \ + --deselect tests/AlignmentFile_test.py::TestIO::testSAM2BAM \ + --deselect tests/AlignmentFile_test.py::TestIO::testWriteUncompressedBAMFile \ + --deselect tests/AlignmentFile_test.py::TestDeNovoConstruction::testBAMWholeFile \ + --deselect tests/AlignmentFile_test.py::TestEmptyHeader::testEmptyHeader \ + --deselect tests/AlignmentFile_test.py::TestHeaderWithProgramOptions::testHeader \ + --deselect tests/StreamFiledescriptors_test.py::StreamTest::test_text_processing \ + tests/ ''; pythonImportsCheck = [ "pysam" "pysam.bcftools" + "pysam.libchtslib" "pysam.libcutils" "pysam.libcvcf" ]; diff --git a/pkgs/development/python-modules/pyshp/default.nix b/pkgs/development/python-modules/pyshp/default.nix index 185465bb640..33ebe945b23 100644 --- a/pkgs/development/python-modules/pyshp/default.nix +++ b/pkgs/development/python-modules/pyshp/default.nix @@ -2,12 +2,12 @@ , setuptools }: buildPythonPackage rec { - version = "2.1.0"; + version = "2.1.2"; pname = "pyshp"; src = fetchPypi { inherit pname version; - sha256 = "1h75a5fisqqj48m6wq7jhdxv6arjg3mvnr5q404pvfbjscj7yp76"; + sha256 = "a0aa668cd0fc09b873f10facfe96971c0496b7fe4f795684d96cc7306ac5841c"; }; buildInputs = [ setuptools ]; diff --git a/pkgs/development/python-modules/pyside/shiboken.nix b/pkgs/development/python-modules/pyside/shiboken.nix index c5561525db5..b0c3368e070 100644 --- a/pkgs/development/python-modules/pyside/shiboken.nix +++ b/pkgs/development/python-modules/pyside/shiboken.nix @@ -1,22 +1,37 @@ -{ lib, fetchurl, cmake, buildPythonPackage, libxml2, libxslt, pysideApiextractor, pysideGeneratorrunner, python, sphinx, qt4, isPy3k, isPy35, isPy36, isPy37 }: +{ lib, fetchFromGitHub, buildPythonPackage +, cmake +, isPy35 +, isPy36 +, isPy37 +, isPy3k +, libxml2 +, libxslt +, pkg-config +, pysideApiextractor +, pysideGeneratorrunner +, python +, qt4 +, sphinx +}: -# This derivation provides a Python module and should therefore be called via `python-packages.nix`. -# Python 3.5 is not supported: https://github.com/PySide/Shiboken/issues/77 buildPythonPackage rec { pname = "pyside-shiboken"; version = "1.2.4"; - format = "other"; + disabled = !isPy3k; - src = fetchurl { - url = "https://github.com/PySide/Shiboken/archive/${version}.tar.gz"; - sha256 = "1536f73a3353296d97a25e24f9554edf3e6a48126886f8d21282c3645ecb96a4"; + src = fetchFromGitHub { + owner = "PySide"; + repo = "Shiboken"; + rev = version; + sha256 = "0x2lyg52m6a0vn0665pgd1z1qrydglyfxxcggw6xzngpnngb6v5v"; }; - enableParallelBuilding = true; - nativeBuildInputs = [ cmake libxml2 libxslt pysideApiextractor pysideGeneratorrunner python sphinx qt4 ]; + nativeBuildInputs = [ cmake pkg-config pysideApiextractor pysideGeneratorrunner sphinx qt4 ]; + + buildInputs = [ python libxml2 libxslt ]; preConfigure = '' echo "preConfigure: Fixing shiboken_generator install target." @@ -27,7 +42,11 @@ buildPythonPackage rec { # gcc6 patch was also sent upstream: https://github.com/pyside/Shiboken/pull/86 patches = [ ./gcc6.patch ] ++ (lib.optional (isPy35 || isPy36 || isPy37) ./shiboken_py35.patch); - cmakeFlags = lib.optional isPy3k "-DUSE_PYTHON3=TRUE"; + cmakeFlags = lib.optionals isPy3k [ + "-DUSE_PYTHON3=TRUE" + "-DPYTHON3_INCLUDE_DIR=${lib.getDev python}/include/${python.libPrefix}" + "-DPYTHON3_LIBRARY=${lib.getLib python}/lib" + ]; meta = { description = "Plugin (front-end) for pyside-generatorrunner, that generates bindings for C++ libraries using CPython source code"; diff --git a/pkgs/development/python-modules/pyside2/default.nix b/pkgs/development/python-modules/pyside2/default.nix index 6d8b828fb95..ed0ab2d533a 100644 --- a/pkgs/development/python-modules/pyside2/default.nix +++ b/pkgs/development/python-modules/pyside2/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { pname = "pyside2"; - version = "5.15.0"; + version = "5.15.1"; src = fetchurl { url = "https://download.qt.io/official_releases/QtForPython/pyside2/PySide2-${version}-src/pyside-setup-opensource-src-${version}.tar.xz"; - sha256 = "0s3bgddcsf6w297nyxv08xpc2nnr3sli980p24nf4xivvr9yxkgi"; + sha256 = "1yn3f414ql8rrvwxlfpp2sckpmb89zj5iszgy1690mrjh7cc2xgi"; }; patches = [ diff --git a/pkgs/development/python-modules/pysmb/default.nix b/pkgs/development/python-modules/pysmb/default.nix index 33bff0e3946..8a5c3ae348a 100644 --- a/pkgs/development/python-modules/pysmb/default.nix +++ b/pkgs/development/python-modules/pysmb/default.nix @@ -8,13 +8,13 @@ buildPythonPackage rec { pname = "pysmb"; - version = "1.2.2"; + version = "1.2.5"; src = fetchPypi { inherit pname version; format = "setuptools"; extension = "zip"; - sha256 = "59ccd07537fb2a630b0d8cccd78e80180bcca72150d7322c318e1bdae927e125"; + sha256 = "7aedd5e003992c6c78b41a0da4bf165359a46ea25ab2a9a1594d13f471ad7287"; }; propagatedBuildInputs = [ @@ -25,6 +25,8 @@ buildPythonPackage rec { # https://github.com/miketeo/pysmb/blob/master/python3/tests/README_1st.txt doCheck = false; + pythonImportsCheck = [ "nmb" "smb" ]; + meta = { description = "Experimental SMB/CIFS library written in Python to support file sharing between Windows and Linux machines"; homepage = "https://miketeo.net/wp/index.php/projects/pysmb"; diff --git a/pkgs/development/python-modules/pysonos/default.nix b/pkgs/development/python-modules/pysonos/default.nix index cf1f74b9b79..c51849d171c 100644 --- a/pkgs/development/python-modules/pysonos/default.nix +++ b/pkgs/development/python-modules/pysonos/default.nix @@ -13,13 +13,13 @@ buildPythonPackage rec { pname = "pysonos"; - version = "0.0.32"; + version = "0.0.35"; disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "b739d20807f5fac95f8e02831faaf04023b7a8cb6f371024d89fd16c6bd8a589"; + sha256 = "3a0f8f6eb6ba0623b93a6995c1978cf72c4eedc5fbedac194e6d89e1b6b985e4"; }; propagatedBuildInputs = [ xmltodict requests ifaddr ]; diff --git a/pkgs/development/python-modules/pyspark/default.nix b/pkgs/development/python-modules/pyspark/default.nix index 22b68406082..d71cf2a0f43 100644 --- a/pkgs/development/python-modules/pyspark/default.nix +++ b/pkgs/development/python-modules/pyspark/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "pyspark"; - version = "3.0.0"; + version = "3.0.1"; src = fetchPypi { inherit pname version; - sha256 = "8c6e5cc51d91eb8d43e81d0b7093292b5e144ac81445491d5f887d2cf4fe121f"; + sha256 = "38b485d3634a86c9a2923c39c8f08f003fdd0e0a3d7f07114b2fb4392ce60479"; }; # pypandoc is broken with pandoc2, so we just lose docs. diff --git a/pkgs/development/python-modules/pystray/default.nix b/pkgs/development/python-modules/pystray/default.nix index cd9259e33c2..6b4bdb59f1e 100644 --- a/pkgs/development/python-modules/pystray/default.nix +++ b/pkgs/development/python-modules/pystray/default.nix @@ -26,6 +26,7 @@ buildPythonPackage rec { homepage = "https://github.com/moses-palmer/pystray"; description = "This library allows you to create a system tray icon"; license = licenses.lgpl3; + platforms = platforms.linux; maintainers = with maintainers; [ jojosch ]; }; } diff --git a/pkgs/development/python-modules/pytest-bdd/default.nix b/pkgs/development/python-modules/pytest-bdd/default.nix index 0ad4392bee9..ccde881d383 100644 --- a/pkgs/development/python-modules/pytest-bdd/default.nix +++ b/pkgs/development/python-modules/pytest-bdd/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "pytest-bdd"; - version = "3.2.1"; + version = "4.0.1"; # tests are not included in pypi tarball src = fetchFromGitHub { owner = "pytest-dev"; repo = pname; rev = version; - sha256 = "02y28l5h1m9grj54p681qvv7nrhd7ly9jkqdchyw4p0lnmcmnsrd"; + sha256 = "1yqzz44as4pxffmg4hk9lijvnvlc2chg1maq1fbj5i4k4jpagvjz"; }; propagatedBuildInputs = [ glob2 Mako parse parse-type py pytest six ]; @@ -27,7 +27,7 @@ buildPythonPackage rec { # Tests require extra dependencies checkInputs = [ execnet mock pytest ]; checkPhase = '' - pytest + PATH=$PATH:$out/bin pytest ''; meta = with stdenv.lib; { diff --git a/pkgs/development/python-modules/pytest-cram/default.nix b/pkgs/development/python-modules/pytest-cram/default.nix index 237e5ee7355..55ee719cd20 100644 --- a/pkgs/development/python-modules/pytest-cram/default.nix +++ b/pkgs/development/python-modules/pytest-cram/default.nix @@ -1,7 +1,7 @@ -{lib, buildPythonPackage, fetchPypi, pytest, cram, bash}: +{ lib, buildPythonPackage, fetchPypi, pytest, cram, bash }: buildPythonPackage rec { - version = "0.2.0"; + version = "0.2.2"; pname = "pytest-cram"; checkInputs = [ pytest ]; @@ -9,8 +9,8 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "006p5dr3q794sbwwmxmdls3nwq0fvnyrxxmc03pgq8n74chl71qn"; - extension = "zip"; + sha256 = "0405ymmrsv6ii2qhq35nxfjkb402sdb6d13xnk53jql3ybgmiqq0"; + extension = "tar.gz"; }; postPatch = '' diff --git a/pkgs/development/python-modules/pytest-flask/default.nix b/pkgs/development/python-modules/pytest-flask/default.nix index 047b06d9792..61c9d37267e 100644 --- a/pkgs/development/python-modules/pytest-flask/default.nix +++ b/pkgs/development/python-modules/pytest-flask/default.nix @@ -1,8 +1,9 @@ -{ stdenv, buildPythonPackage, fetchPypi, pytest, flask, werkzeug, setuptools_scm }: +{ stdenv, buildPythonPackage, fetchPypi, pytest, flask, werkzeug, setuptools_scm, isPy27 }: buildPythonPackage rec { pname = "pytest-flask"; version = "1.0.0"; + disabled = isPy27; src = fetchPypi { inherit pname version; @@ -11,11 +12,8 @@ buildPythonPackage rec { doCheck = false; - buildInputs = [ - pytest - ]; - propagatedBuildInputs = [ + pytest flask werkzeug ]; diff --git a/pkgs/development/python-modules/pytest-warnings/default.nix b/pkgs/development/python-modules/pytest-warnings/default.nix index 7f9de5b5eca..600ffbfdc7f 100644 --- a/pkgs/development/python-modules/pytest-warnings/default.nix +++ b/pkgs/development/python-modules/pytest-warnings/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "pytest-warnings"; - version = "0.3.0"; + version = "0.3.1"; src = fetchPypi { inherit pname version; - sha256 = "18yxh153icmndaw8fkl1va0bk0mwzrbpaa6wxd29w3iwxym5zn2a"; + sha256 = "5939f76fe04ad18297e53af0c9fb38aca1ec74db807bd40ad72733603adbbc7d"; }; propagatedBuildInputs = [ pytest ]; diff --git a/pkgs/development/python-modules/pytest-xdist/2.nix b/pkgs/development/python-modules/pytest-xdist/2.nix index ea4741cab60..cc58c5ab6bd 100644 --- a/pkgs/development/python-modules/pytest-xdist/2.nix +++ b/pkgs/development/python-modules/pytest-xdist/2.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "82d938f1a24186520e2d9d3a64ef7d9ac7ecdf1a0659e095d18e596b8cbd0672"; + sha256 = "0wh6pn66nncfs6ay0n863bgyriwsgppn8flx5l7551j1lbqkinc2"; }; nativeBuildInputs = [ setuptools_scm pytest_6 ]; @@ -16,10 +16,12 @@ buildPythonPackage rec { propagatedBuildInputs = [ execnet pytest-forked psutil six ]; # pytest6 doesn't allow for new lines + # capture_deprecated not compatible with latest pytest6 checkPhase = '' # Excluded tests access file system export HOME=$TMPDIR - pytest -n $NIX_BUILD_CORES -k "not (distribution_rsyncdirs_example or rsync)" + pytest -n $NIX_BUILD_CORES \ + -k "not (distribution_rsyncdirs_example or rsync or warning_captured_deprecated_in_pytest_6)" ''; meta = with stdenv.lib; { diff --git a/pkgs/development/python-modules/pytest/default.nix b/pkgs/development/python-modules/pytest/default.nix index ce742d65ba2..29def3082a4 100644 --- a/pkgs/development/python-modules/pytest/default.nix +++ b/pkgs/development/python-modules/pytest/default.nix @@ -21,14 +21,14 @@ }: buildPythonPackage rec { - version = "6.0.1"; + version = "6.1.1"; pname = "pytest"; disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "85228d75db9f45e06e57ef9bf4429267f81ac7c0d742cc9ed63d09886a9fe6f4"; + sha256 = "8f593023c1a0f916110285b6efd7f99db07d59546e3d8c36fc60e2ab05d3be92"; }; checkInputs = [ hypothesis pygments ]; diff --git a/pkgs/development/python-modules/python-igraph/default.nix b/pkgs/development/python-modules/python-igraph/default.nix index d67ec59f3ac..51d544eb5f8 100644 --- a/pkgs/development/python-modules/python-igraph/default.nix +++ b/pkgs/development/python-modules/python-igraph/default.nix @@ -4,7 +4,7 @@ buildPythonPackage rec { pname = "python-igraph"; - version = "0.8.2"; + version = "0.8.3"; disabled = !isPy3k; # fails to build nativeBuildInputs = [ pkgconfig ]; @@ -13,7 +13,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "4601638d7d22eae7608cdf793efac75e6c039770ec4bd2cecf76378c84ce7d72"; + sha256 = "e1f27622eddeb2bd5fdcbadb41ef048e884790bb050f9627c086dc609d0f1236"; }; # NB: We want to use our igraph, not vendored igraph, but even with diff --git a/pkgs/development/python-modules/python-jose/default.nix b/pkgs/development/python-modules/python-jose/default.nix index 09a42458311..6b8104516ea 100644 --- a/pkgs/development/python-modules/python-jose/default.nix +++ b/pkgs/development/python-modules/python-jose/default.nix @@ -6,13 +6,13 @@ buildPythonPackage rec { pname = "python-jose"; - version = "3.1.0"; + version = "3.2.0"; src = fetchFromGitHub { owner = "mpdavis"; repo = "python-jose"; rev = version; - sha256 = "1gnn0zy03pywj65ammy3sd07knzhjv8n5jhx1ir9bikgra9v0iqh"; + sha256 = "cSPIZrps0xFd4pPcQ4w/jFWOk2XYgd3mtE/sDzlytvY="; }; checkInputs = [ @@ -23,6 +23,13 @@ buildPythonPackage rec { cryptography # optional dependency, but needed in tests ]; + # relax ecdsa deps + patchPhase = '' + substituteInPlace setup.py \ + --replace 'ecdsa<0.15' 'ecdsa' \ + --replace 'ecdsa <0.15' 'ecdsa' + ''; + disabledTests = [ # https://github.com/mpdavis/python-jose/issues/176 "test_key_too_short" diff --git a/pkgs/development/python-modules/python-json-logger/default.nix b/pkgs/development/python-modules/python-json-logger/default.nix index 26ab4c118ce..d21e1dfccc9 100644 --- a/pkgs/development/python-modules/python-json-logger/default.nix +++ b/pkgs/development/python-modules/python-json-logger/default.nix @@ -1,16 +1,18 @@ { stdenv , buildPythonPackage , fetchPypi +, isPy27 , nose }: buildPythonPackage rec { - version = "0.1.11"; + version = "2.0.1"; pname = "python-json-logger"; + disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "b7a31162f2a01965a5efb94453ce69230ed208468b0bbc7fdfc56e6d8df2e281"; + sha256 = "f26eea7898db40609563bed0a7ca11af12e2a79858632706d835a0f961b7d398"; }; checkInputs = [ nose ]; diff --git a/pkgs/development/python-modules/python-markdown-math/default.nix b/pkgs/development/python-modules/python-markdown-math/default.nix index ea08d7f902c..6f18a47e13c 100644 --- a/pkgs/development/python-modules/python-markdown-math/default.nix +++ b/pkgs/development/python-modules/python-markdown-math/default.nix @@ -2,11 +2,13 @@ , buildPythonPackage , fetchPypi , markdown +, isPy27 }: buildPythonPackage rec { pname = "python-markdown-math"; version = "0.7"; + disabled = isPy27; src = fetchPypi { inherit pname version; diff --git a/pkgs/development/python-modules/python-openems/default.nix b/pkgs/development/python-modules/python-openems/default.nix new file mode 100644 index 00000000000..dd669cf5475 --- /dev/null +++ b/pkgs/development/python-modules/python-openems/default.nix @@ -0,0 +1,49 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, cython +, openems +, csxcad +, boost +, python-csxcad +, numpy +, h5py +}: + +buildPythonPackage rec { + pname = "python-openems"; + version = "unstable-2020-02-15"; + + src = fetchFromGitHub { + owner = "thliebig"; + repo = "openEMS"; + rev = "ba793ac84e2f78f254d6d690bb5a4c626326bbfd"; + sha256 = "1dca6b6ccy771irxzsj075zvpa3dlzv4mjb8xyg9d889dqlgyl45"; + }; + + sourceRoot = "source/python"; + + nativeBuildInputs = [ + cython + boost + ]; + + propagatedBuildInputs = [ + openems + csxcad + python-csxcad + numpy + h5py + ]; + + setupPyBuildFlags = "-I${openems}/include -L${openems}/lib -R${openems}/lib"; + pythonImportsCheck = [ "openEMS" ]; + + meta = with lib; { + description = "Python interface to OpenEMS"; + homepage = "http://openems.de/index.php/Main_Page.html"; + license = licenses.gpl3; + maintainers = with maintainers; [ matthuszagh ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/development/python-modules/python-rtmidi/default.nix b/pkgs/development/python-modules/python-rtmidi/default.nix index c2cced83509..2b65a658f98 100644 --- a/pkgs/development/python-modules/python-rtmidi/default.nix +++ b/pkgs/development/python-modules/python-rtmidi/default.nix @@ -4,12 +4,12 @@ buildPythonPackage rec { pname = "python-rtmidi"; - version = "1.4.5"; + version = "1.4.6"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "3dd1909d0f44f03a4191131f1829cac2ee6a94f5a4be2a9606354748e594e704"; + sha256 = "1aqhsl9w3h0rwf3mhr8parjbxm2sb6sn5mac6725cvm535pqqyhz"; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/python-modules/python-sat/default.nix b/pkgs/development/python-modules/python-sat/default.nix new file mode 100644 index 00000000000..ea3d1bfb444 --- /dev/null +++ b/pkgs/development/python-modules/python-sat/default.nix @@ -0,0 +1,24 @@ +{ buildPythonPackage, fetchFromGitHub, lib, six, pypblib, pytestCheckHook }: + +buildPythonPackage rec { + pname = "python-sat"; + version = "0.1.6.dev6"; + + src = fetchFromGitHub { + owner = "pysathq"; + repo = "pysat"; + rev = version; + sha256 = "1gckxhqkvzyw7pmwg8xzxq146jysqy0s23l5mjc3awm6swdij66y"; + }; + + propagatedBuildInputs = [ six pypblib ]; + + checkInputs = [ pytestCheckHook ]; + + meta = with lib; { + description = "Toolkit to provide interface for various SAT (without optional dependancy py-aiger-cnf)"; + homepage = "https://github.com/pysathq/pysat"; + license = licenses.mit; + maintainers = [ maintainers.marius851000 ]; + }; +} diff --git a/pkgs/development/python-modules/pytorch/bin.nix b/pkgs/development/python-modules/pytorch/bin.nix index b1b662e95b3..f073c408f70 100644 --- a/pkgs/development/python-modules/pytorch/bin.nix +++ b/pkgs/development/python-modules/pytorch/bin.nix @@ -11,17 +11,20 @@ , patchelf , pyyaml , requests +, typing-extensions }: let pyVerNoDot = builtins.replaceStrings [ "." ] [ "" ] python.pythonVersion; platform = if stdenv.isDarwin then "darwin" else "linux"; - srcs = import ./binary-hashes.nix; + srcs = import ./binary-hashes.nix version; unsupported = throw "Unsupported system"; + version = "1.7.0"; in buildPythonPackage { + inherit version; + pname = "pytorch"; # Don't forget to update pytorch to the same version. - version = "1.6.0"; format = "wheel"; @@ -39,6 +42,17 @@ in buildPythonPackage { numpy pyyaml requests + typing-extensions + ]; + + # PyTorch are broken: the dataclasses wheel is required, but ships with + # Python >= 3.7. Our dataclasses derivation is incompatible with >= 3.7. + # + # https://github.com/pytorch/pytorch/issues/46930 + # + # Should be removed with the next PyTorch version. + pipInstallFlags = [ + "--no-deps" ]; postInstall = '' diff --git a/pkgs/development/python-modules/pytorch/binary-hashes.nix b/pkgs/development/python-modules/pytorch/binary-hashes.nix index 481dc6825c7..afdde5057db 100644 --- a/pkgs/development/python-modules/pytorch/binary-hashes.nix +++ b/pkgs/development/python-modules/pytorch/binary-hashes.nix @@ -1,10 +1,10 @@ -{ +version: { x86_64-linux-37 = { - url = "https://download.pytorch.org/whl/cu102/torch-1.6.0-cp37-cp37m-linux_x86_64.whl"; - sha256 = "0xhwv68j8gvahfzcp43bqp2x71iwv6zjhkw2f1hb82xps40mrml7"; + url = "https://download.pytorch.org/whl/cu102/torch-${version}-cp37-cp37m-linux_x86_64.whl"; + sha256 = "0cvafwzd44d7i2d0y01lyk75lhxffcf6c94cx0wla0cnhcg9mqlf"; }; x86_64-linux-38 = { - url = "https://download.pytorch.org/whl/cu102/torch-1.6.0-cp38-cp38-linux_x86_64.whl"; - sha256 = "05m2l04wqzw5xvjam6zwvlmc3979cksl3hrdqc2aikrv4hz8fmsk"; + url = "https://download.pytorch.org/whl/cu102/torch-${version}-cp38-cp38-linux_x86_64.whl"; + sha256 = "1vxswkb2gzp87sbb5ycvyvs8aw1szp3v2mwdn4mp47yarlnbx8r6"; }; } diff --git a/pkgs/development/python-modules/pywal/default.nix b/pkgs/development/python-modules/pywal/default.nix index b565188ccea..ccc862f8aa4 100644 --- a/pkgs/development/python-modules/pywal/default.nix +++ b/pkgs/development/python-modules/pywal/default.nix @@ -28,7 +28,7 @@ buildPythonPackage rec { ''; meta = with lib; { - description = "Generate and change colorschemes on the fly. A 'wal' rewrite in Python 3."; + description = "Generate and change colorschemes on the fly. A 'wal' rewrite in Python 3"; homepage = "https://github.com/dylanaraps/pywal"; license = licenses.mit; maintainers = with maintainers; [ Fresheyeball ]; diff --git a/pkgs/development/python-modules/qtconsole/default.nix b/pkgs/development/python-modules/qtconsole/default.nix index a1bf4d53018..4d1123aaa78 100644 --- a/pkgs/development/python-modules/qtconsole/default.nix +++ b/pkgs/development/python-modules/qtconsole/default.nix @@ -15,11 +15,11 @@ buildPythonPackage rec { pname = "qtconsole"; - version = "4.7.6"; + version = "4.7.7"; src = fetchPypi { inherit pname version; - sha256 = "6c24397c19a49a5cf69582c931db4b0f6b00a78530a2bfd122936f2ebfae2fef"; + sha256 = "f236ead8711dba0702507dd8fad473c7216a86eefa6098eff8ec4b54f57d7804"; }; checkInputs = [ nose ] ++ lib.optionals isPy27 [mock]; diff --git a/pkgs/development/python-modules/redbaron/default.nix b/pkgs/development/python-modules/redbaron/default.nix new file mode 100644 index 00000000000..841d6a31fb2 --- /dev/null +++ b/pkgs/development/python-modules/redbaron/default.nix @@ -0,0 +1,27 @@ +{ lib, fetchPypi, buildPythonPackage, baron, pytestCheckHook }: + +buildPythonPackage rec { + pname = "redbaron"; + version = "0.9.2"; + + src = fetchPypi { + inherit pname version; + sha256 = "0bqkq0wn20cc3qrcd1ifq74p4m570j345bkq4axl08kbr8whfba7"; + }; + + propagatedBuildInputs = [ baron ]; + + preCheck = '' + rm -rf tests/__pycache__ + rm tests/test_bounding_box.py + ''; #error about fixtures + + checkInputs = [ pytestCheckHook ]; + + meta = with lib; { + homepage = "https://github.com/gristlabs/asttokens"; + description = "Abstraction on top of baron, a FST for python to make writing refactoring code a realistic task"; + license = licenses.lgpl3Plus; + maintainers = with maintainers; [ marius851000 ]; + }; +} diff --git a/pkgs/development/python-modules/rich/default.nix b/pkgs/development/python-modules/rich/default.nix index 71166b86f18..6284ed7b649 100644 --- a/pkgs/development/python-modules/rich/default.nix +++ b/pkgs/development/python-modules/rich/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "rich"; - version = "8.0.0"; + version = "9.1.0"; # tests not included in pypi tarball src = fetchFromGitHub { owner = "willmcgugan"; repo = pname; rev = "v${version}"; - sha256 = "0hv27b22x7dbx1i7nzsd8y8fymmvdak2hcx9242jwk4c1a7jr151"; + sha256 = "18iha0fs8vm0j11k39yxj26h8qxrp27ijhx6h1yyizbygmr5b5nk"; }; format = "pyproject"; diff --git a/pkgs/development/python-modules/sacn/default.nix b/pkgs/development/python-modules/sacn/default.nix new file mode 100644 index 00000000000..35c7a744329 --- /dev/null +++ b/pkgs/development/python-modules/sacn/default.nix @@ -0,0 +1,28 @@ +{ lib +, buildPythonPackage +, fetchPypi +, isPy27 +}: + +buildPythonPackage rec { + pname = "sacn"; + version = "1.4.6"; + disabled = isPy27; + + src = fetchPypi { + inherit pname version; + sha256 = "015wa9nhqgd0kb60bw19g86ga25s9mpvsbqkahi3kw6df6j0wzss"; + }; + + # no tests + doCheck = false; + + pythonImportsCheck = [ "sacn" ]; + + meta = with lib; { + description = "A simple ANSI E1.31 (aka sACN) module for python"; + homepage = "https://github.com/Hundemeier/sacn"; + license = licenses.mit; + maintainers = with maintainers; [ hexa ]; + }; +} diff --git a/pkgs/development/python-modules/scrapy-fake-useragent/default.nix b/pkgs/development/python-modules/scrapy-fake-useragent/default.nix index a9199614f46..b2de4e9a993 100644 --- a/pkgs/development/python-modules/scrapy-fake-useragent/default.nix +++ b/pkgs/development/python-modules/scrapy-fake-useragent/default.nix @@ -19,6 +19,6 @@ buildPythonPackage rec { meta = with stdenv.lib; { description = "Random User-Agent middleware based on fake-useragent"; homepage = "https://github.com/alecxe/scrapy-fake-useragent"; - license = licenses.bsd3; + license = licenses.mit; }; } diff --git a/pkgs/development/python-modules/setuptools-rust/default.nix b/pkgs/development/python-modules/setuptools-rust/default.nix new file mode 100644 index 00000000000..a00ea9e818f --- /dev/null +++ b/pkgs/development/python-modules/setuptools-rust/default.nix @@ -0,0 +1,29 @@ +{ stdenv +, buildPythonPackage +, fetchPypi +, semantic-version +, setuptools +, setuptools_scm +, toml +}: + +buildPythonPackage rec { + pname = "setuptools-rust"; + version = "0.11.3"; + + src = fetchPypi { + inherit pname version; + sha256 = "1p21sw77197m7pciy8g25bwwaakq1675h0x1lis9sypzr46p2s11"; + }; + + nativeBuildInputs = [ setuptools_scm ]; + + propagatedBuildInputs = [ semantic-version setuptools toml ]; + + meta = with stdenv.lib; { + description = "Setuptools plugin for Rust support"; + homepage = "https://github.com/PyO3/setuptools-rust"; + license = licenses.mit; + maintainers = with maintainers; [ danieldk ]; + }; +} diff --git a/pkgs/development/python-modules/shapely/default.nix b/pkgs/development/python-modules/shapely/default.nix index d895f00285d..d4d52a9bf03 100644 --- a/pkgs/development/python-modules/shapely/default.nix +++ b/pkgs/development/python-modules/shapely/default.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { pname = "Shapely"; - version = "1.7.0"; + version = "1.7.1"; src = fetchPypi { inherit pname version; - sha256 = "07lmrihj6pa7f99m97hbf2anqlhhwippcdz03bqkyihnlkhry6p2"; + sha256 = "0adiz4jwmwxk7k1awqifb1a9bj5x4nx4gglb5dz9liam21674h8n"; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/shapely/library-paths.patch b/pkgs/development/python-modules/shapely/library-paths.patch index 4081936abe3..319eb8a72db 100644 --- a/pkgs/development/python-modules/shapely/library-paths.patch +++ b/pkgs/development/python-modules/shapely/library-paths.patch @@ -2,7 +2,7 @@ diff --git a/shapely/geos.py b/shapely/geos.py index d5a67d2..19b7ffc 100644 --- a/shapely/geos.py +++ b/shapely/geos.py -@@ -61,123 +61,11 @@ def load_dll(libname, fallbacks=None, mode=DEFAULT_MODE): +@@ -61,127 +61,10 @@ def load_dll(libname, fallbacks=None, mode=DEFAULT_MODE): "Could not find lib {} or load any of its variants {}.".format( libname, fallbacks or [])) @@ -80,7 +80,11 @@ index d5a67d2..19b7ffc 100644 - ] - _lgeos = load_dll('geos_c', fallbacks=alt_paths) - -- free = load_dll('c').free +- # ctypes.CDLL(None) internally calls dlopen(NULL), and as the dlopen +- # manpage says, "If filename is NULL, then the returned handle is for the +- # main program". This way we can let the linker do the work to figure out +- # which libc Python is actually using. +- free = CDLL(None).free - free.argtypes = [c_void_p] - free.restype = None - @@ -112,7 +116,7 @@ index d5a67d2..19b7ffc 100644 - except WindowsError: - # XXX: See http://trac.gispython.org/projects/PCL/ticket/149 - pass - +- -elif sys.platform == 'sunos5': - _lgeos = load_dll('geos_c', fallbacks=['libgeos_c.so.1', 'libgeos_c.so']) - free = CDLL('libc.so.1').free diff --git a/pkgs/development/python-modules/sharedmem/default.nix b/pkgs/development/python-modules/sharedmem/default.nix index 9111fd971ca..942e272229a 100644 --- a/pkgs/development/python-modules/sharedmem/default.nix +++ b/pkgs/development/python-modules/sharedmem/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "sharedmem"; - version = "0.3.7"; + version = "0.3.8"; src = fetchPypi { inherit pname version; - sha256 = "483e414b8c5d03093a02baf548449f1d8426a88855556fa42102bba82b86b2a8"; + sha256 = "c654a6bee2e2f35c82e6cc8b6c262fcabd378f5ba11ac9ef71530f8dabb8e2f7"; }; propagatedBuildInputs = [ numpy ]; diff --git a/pkgs/development/python-modules/shodan/default.nix b/pkgs/development/python-modules/shodan/default.nix index ecc18c5c526..f361659d9ac 100644 --- a/pkgs/development/python-modules/shodan/default.nix +++ b/pkgs/development/python-modules/shodan/default.nix @@ -10,11 +10,11 @@ buildPythonPackage rec { pname = "shodan"; - version = "1.23.1"; + version = "1.24.0"; src = fetchPypi { inherit pname version; - sha256 = "d2d37d47dd084747df672e6d981f6d72d5d03f4ee12f0ce2170e618147578349"; + sha256 = "0b5ec40c954cd48c4e3234e81ad92afdc68438f82ad392fed35b7097eb77b6dd"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/simplefix/default.nix b/pkgs/development/python-modules/simplefix/default.nix index 06968443426..6e498ebeaea 100644 --- a/pkgs/development/python-modules/simplefix/default.nix +++ b/pkgs/development/python-modules/simplefix/default.nix @@ -2,13 +2,13 @@ buildPythonPackage rec { pname = "simplefix"; - version = "1.0.12"; + version = "1.0.14"; src = fetchFromGitHub { repo = "simplefix"; owner = "da4089"; rev = "v${version}"; - sha256 = "0pnyqxpki1ija0kha7axi6irgiifcz4w77libagkv46b1z11cc4r"; + sha256 = "1qccb63w6swq7brp0zinkkngpazmb25r21adry5cq6nniqs5g5zx"; }; checkPhase = '' diff --git a/pkgs/development/python-modules/smart_open/default.nix b/pkgs/development/python-modules/smart_open/default.nix index 6dff98a09b4..d5177dfd2e9 100644 --- a/pkgs/development/python-modules/smart_open/default.nix +++ b/pkgs/development/python-modules/smart_open/default.nix @@ -13,12 +13,12 @@ buildPythonPackage rec { pname = "smart_open"; - version = "2.1.1"; + version = "3.0.0"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - sha256 = "51b05acd85ec007e1d4dcdbf2bbf917218a45026f37d559559401114bb5e5840"; + sha256 = "7f4e85b71df5a3618f5447d0b417b7a3576308c839690a24a70338b8993684c3"; }; # nixpkgs version of moto is >=1.2.0, remove version pin to fix build diff --git a/pkgs/development/python-modules/snowflake-connector-python/default.nix b/pkgs/development/python-modules/snowflake-connector-python/default.nix index bdedfc0ed4b..6f271e1758a 100644 --- a/pkgs/development/python-modules/snowflake-connector-python/default.nix +++ b/pkgs/development/python-modules/snowflake-connector-python/default.nix @@ -25,12 +25,12 @@ buildPythonPackage rec { pname = "snowflake-connector-python"; - version = "2.3.2"; + version = "2.3.4"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "0as7m736wgx684wssnvhvixjkqidnhxn9i98rcdgagr67s3akfdy"; + sha256 = "5a072ee61ef156e5938e04447f0b99248b87ef262e498b5e5002f5b579cd7fb2"; }; propagatedBuildInputs = [ @@ -57,13 +57,14 @@ buildPythonPackage rec { postPatch = '' substituteInPlace setup.py \ + --replace "'boto3>=1.4.4,<1.15'," "'boto3~=1.15'," \ --replace "'cryptography>=2.5.0,<3.0.0'," "'cryptography'," \ --replace "'idna<2.10'," "'idna'," \ --replace "'requests<2.24.0'," "'requests'," ''; - # tests are not working - # XXX: fix the tests + # tests require encrypted secrets, see + # https://github.com/snowflakedb/snowflake-connector-python/tree/master/.github/workflows/parameters doCheck = false; pythonImportsCheck = [ "snowflake" "snowflake.connector" ]; diff --git a/pkgs/development/python-modules/snowflake-sqlalchemy/default.nix b/pkgs/development/python-modules/snowflake-sqlalchemy/default.nix index 0eb0b6bebec..99c5822f350 100644 --- a/pkgs/development/python-modules/snowflake-sqlalchemy/default.nix +++ b/pkgs/development/python-modules/snowflake-sqlalchemy/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "snowflake-sqlalchemy"; - version = "1.2.3"; + version = "1.2.4"; src = fetchPypi { inherit pname version; - sha256 = "2c598ef37623ef4d035a827f1e84725b3239a47f4366417d089de88f72fc4ac9"; + sha256 = "e79d83d4947a0945488699324802eda4ad4a63c7680ad5b2a42c71f4faa2cd8b"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/spotipy/default.nix b/pkgs/development/python-modules/spotipy/default.nix index 1e003be1f5e..63ec4abcac4 100644 --- a/pkgs/development/python-modules/spotipy/default.nix +++ b/pkgs/development/python-modules/spotipy/default.nix @@ -1,28 +1,32 @@ -{ stdenv, buildPythonPackage, fetchPypi, requests, six, mock }: +{ lib +, buildPythonPackage +, fetchPypi +, requests +, six }: buildPythonPackage rec { pname = "spotipy"; - version = "2.16.0"; + version = "2.16.1"; src = fetchPypi { inherit pname version; - sha256 = "315eadd1248053ed336b4d3adbf2e3c32895fdbb0cfcd170542c848c8fd45649"; + sha256 = "1f50xczv8kgly6wz6zrvqzwdj6nvhdlgx8wnrhmbipjrb6qacr25"; }; propagatedBuildInputs = [ requests six ]; - checkInputs = [ mock ]; - preConfigure = '' - substituteInPlace setup.py \ - --replace "mock==2.0.0" "mock" - ''; + # tests want to access the spotify API + doCheck = false; + pythonImportsCheck = [ + "spotipy" + "spotipy.oauth2" + ]; - pythonImportsCheck = [ "spotipy" ]; - - meta = with stdenv.lib; { + meta = with lib; { homepage = "https://spotipy.readthedocs.org/"; + changelog = "https://github.com/plamere/spotipy/blob/${version}/CHANGELOG.md"; description = "A light weight Python library for the Spotify Web API"; license = licenses.mit; - maintainers = [ maintainers.rvolosatovs ]; + maintainers = with maintainers; [ rvolosatovs ]; }; } diff --git a/pkgs/development/python-modules/sqlobject/default.nix b/pkgs/development/python-modules/sqlobject/default.nix index 05dab8d0265..ccd4190bbfd 100644 --- a/pkgs/development/python-modules/sqlobject/default.nix +++ b/pkgs/development/python-modules/sqlobject/default.nix @@ -10,11 +10,11 @@ buildPythonPackage rec { pname = "SQLObject"; - version = "3.8.0"; + version = "3.8.1"; src = fetchPypi { inherit pname version; - sha256 = "00fb93313067cdbe52fe436eef1e79038b42c969cf44016b24f9eae0511db2d7"; + sha256 = "620657105ab5720658222d10ad13c52281fe524137b59ab166eee4427ee2f548"; }; checkInputs = [ pytest ]; diff --git a/pkgs/development/python-modules/sseclient/default.nix b/pkgs/development/python-modules/sseclient/default.nix index 8ba678ed575..ebc6435bc79 100644 --- a/pkgs/development/python-modules/sseclient/default.nix +++ b/pkgs/development/python-modules/sseclient/default.nix @@ -1,18 +1,20 @@ -{ stdenv, buildPythonPackage, fetchPypi +{ stdenv, buildPythonPackage, fetchPypi, isPy27 , requests, six , backports_unittest-mock, pytestCheckHook, pytestrunner }: buildPythonPackage rec { pname = "sseclient"; - version = "0.0.26"; + version = "0.0.27"; src = fetchPypi { inherit pname version; - sha256 = "33f45ab71bb6369025d6a1014e15f12774f7ea25b7e80eeb00bd73668d5fefad"; + sha256 = "b2fe534dcb33b1d3faad13d60c5a7c718e28f85987f2a034ecf5ec279918c11c"; }; propagatedBuildInputs = [ requests six ]; + # some tests use python3 strings + doCheck = !isPy27; checkInputs = [ backports_unittest-mock pytestCheckHook pytestrunner ]; # tries to open connection to wikipedia diff --git a/pkgs/development/python-modules/tensorflow/2/default.nix b/pkgs/development/python-modules/tensorflow/2/default.nix index bd049a9a2ca..7925cb15f03 100644 --- a/pkgs/development/python-modules/tensorflow/2/default.nix +++ b/pkgs/development/python-modules/tensorflow/2/default.nix @@ -22,7 +22,7 @@ # XLA without CUDA is broken , xlaSupport ? cudaSupport # Default from ./configure script -, cudaCapabilities ? [ "3.5" "5.2" ] +, cudaCapabilities ? [ "sm_35" "sm_50" "sm_60" "sm_70" "sm_75" "compute_80" ] , sse42Support ? stdenv.hostPlatform.sse4_2Support , avx2Support ? stdenv.hostPlatform.avx2Support , fmaSupport ? stdenv.hostPlatform.fmaSupport diff --git a/pkgs/development/python-modules/titlecase/default.nix b/pkgs/development/python-modules/titlecase/default.nix index c1de2454e4b..acc8b9c5670 100644 --- a/pkgs/development/python-modules/titlecase/default.nix +++ b/pkgs/development/python-modules/titlecase/default.nix @@ -1,4 +1,4 @@ -{buildPythonPackage, lib, nose, fetchPypi}: +{ buildPythonPackage, lib, nose, fetchPypi, regex }: buildPythonPackage rec { pname = "titlecase"; @@ -9,6 +9,8 @@ buildPythonPackage rec { sha256 = "16e279edf085293bc9c44a68ce959c7d6cd5c653e6b5669a3a3640015cb63eb6"; }; + propagatedBuildInputs = [ regex ]; + checkInputs = [ nose ]; meta = { @@ -17,4 +19,3 @@ buildPythonPackage rec { license = lib.licenses.mit; }; } - diff --git a/pkgs/development/python-modules/tokenizers/default.nix b/pkgs/development/python-modules/tokenizers/default.nix index d650f350bd2..5b0ba5d0bfa 100644 --- a/pkgs/development/python-modules/tokenizers/default.nix +++ b/pkgs/development/python-modules/tokenizers/default.nix @@ -2,10 +2,12 @@ , rustPlatform , fetchFromGitHub , fetchurl -, maturin , pipInstallHook -, pytest +, setuptools-rust +, wheel +, numpy , python +, pytestCheckHook , requests }: @@ -18,10 +20,18 @@ let url = "https://s3.amazonaws.com/models.huggingface.co/bert/roberta-base-merges.txt"; sha256 = "1idd4rvkpqqbks51i2vjbd928inw7slij9l4r063w3y5fd3ndq8w"; }; + albertVocab = fetchurl { + url = "https://s3.amazonaws.com/models.huggingface.co/bert/albert-base-v1-tokenizer.json"; + sha256 = "1hra9pn8rczx7378z88zjclw2qsdrdwq20m56sy42s2crbas6akf"; + }; bertVocab = fetchurl { url = "https://s3.amazonaws.com/models.huggingface.co/bert/bert-base-uncased-vocab.txt"; sha256 = "18rq42cmqa8zanydsbzrb34xwy4l6cz1y900r4kls57cbhvyvv07"; }; + norvigBig = fetchurl { + url = "https://norvig.com/big.txt"; + sha256 = "0yz80icdly7na03cfpl0nfk5h3j3cam55rj486n03wph81ynq1ps"; + }; openaiVocab = fetchurl { url = "https://s3.amazonaws.com/models.huggingface.co/bert/openai-gpt-vocab.json"; sha256 = "0y40gc9bixj5rxv674br1rxmxkd3ly29p80x1596h8yywwcrpx7x"; @@ -32,38 +42,34 @@ let }; in rustPlatform.buildRustPackage rec { pname = "tokenizers"; - version = "0.8.1"; + version = "0.9.2"; src = fetchFromGitHub { owner = "huggingface"; repo = pname; rev = "python-v${version}"; - sha256 = "0sxdwx05hr87j2z32rk4rgwn6a26w9r7m5fgj6ah1sgagiiyxbjw"; + sha256 = "0rsm1g5zfq3ygdb3s8v9xqqpgfzvvkc4n5ik3ahy8sw7pyjljb4m"; }; - # Update parking_lot to be compatible with recent Rust versions, that - # replace asm! by llvm_asm!: - # - # https://github.com/Amanieu/parking_lot/pull/223 - # - # Remove once upstream updates this dependency. - cargoPatches = [ ./update-parking-lot.diff ]; - - cargoSha256 = "0cdkxmj8z2wdspn6r62lqlpvd0sj1z0cmb1zpqaajxvr0b2kjlj8"; + cargoSha256 = "0yn699dq9hdjh7fyci99ni8mmd5qdhzrsi80grzgf5cch8g38rbi"; sourceRoot = "source/bindings/python"; nativeBuildInputs = [ - maturin pipInstallHook + setuptools-rust + wheel ]; propagatedBuildInputs = [ + numpy python ]; - # tokenizers uses pyo3, which requires Rust nightly. - RUSTC_BOOTSTRAP = 1; + installCheckInputs = [ + pytestCheckHook + requests + ]; doCheck = false; doInstallCheck = true; @@ -74,51 +80,21 @@ in rustPlatform.buildRustPackage rec { ( cd $sourceRoot/tests/data ln -s ${robertaVocab} roberta-base-vocab.json ln -s ${robertaMerges} roberta-base-merges.txt + ln -s ${albertVocab} albert-base-v1-tokenizer.json ln -s ${bertVocab} bert-base-uncased-vocab.txt + ln -s ${norvigBig} big.txt ln -s ${openaiVocab} openai-gpt-vocab.json ln -s ${openaiMerges} openai-gpt-merges.txt ) ''; - postPatch = '' - # pyo3's build check verifies that Rust is a nightly - # version. Disable this check. - substituteInPlace $NIX_BUILD_TOP/$cargoDepsCopy/pyo3/build.rs \ - --replace "check_rustc_version()?;" "" - - # Patching the vendored dependency invalidates the file - # checksums, so remove them. This should be safe, since - # this is just a copy of the vendored dependencies and - # the integrity of the vendored dependencies is validated - # by cargoSha256. - sed -r -i 's|"files":\{[^}]+\}|"files":{}|' \ - $NIX_BUILD_TOP/$cargoDepsCopy/pyo3/.cargo-checksum.json - - # Maturin uses the crate name as the wheel name. - substituteInPlace Cargo.toml \ - --replace "tokenizers-python" "tokenizers" - ''; - buildPhase = '' - maturin build --release --manylinux off + ${python.interpreter} setup.py bdist_wheel ''; installPhase = '' - # Put the wheels where the pip install hook can find them. - install -Dm644 -t dist target/wheels/*.whl pipInstallPhase ''; - installCheckInputs = [ - pytest - requests - ]; - - installCheckPhase = '' - # Append paths, or the binding's tokenizer module will be - # used, since the test directories have __init__.py - pytest --import-mode=append - ''; - meta = with stdenv.lib; { homepage = "https://github.com/huggingface/tokenizers"; description = "Fast State-of-the-Art Tokenizers optimized for Research and Production"; diff --git a/pkgs/development/python-modules/tokenizers/update-parking-lot.diff b/pkgs/development/python-modules/tokenizers/update-parking-lot.diff deleted file mode 100644 index d8f144465ac..00000000000 --- a/pkgs/development/python-modules/tokenizers/update-parking-lot.diff +++ /dev/null @@ -1,63 +0,0 @@ -diff --git a/bindings/python/Cargo.lock b/bindings/python/Cargo.lock -index f50db71..ea71817 100644 ---- a/Cargo.lock -+++ b/Cargo.lock -@@ -269,7 +269,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" - - [[package]] - name = "lock_api" --version = "0.3.3" -+version = "0.3.4" - source = "registry+https://github.com/rust-lang/crates.io-index" - dependencies = [ - "scopeguard 1.1.0 (registry+https://github.com/rust-lang/crates.io-index)", -@@ -337,16 +337,16 @@ dependencies = [ - - [[package]] - name = "parking_lot" --version = "0.10.0" -+version = "0.10.2" - source = "registry+https://github.com/rust-lang/crates.io-index" - dependencies = [ -- "lock_api 0.3.3 (registry+https://github.com/rust-lang/crates.io-index)", -- "parking_lot_core 0.7.0 (registry+https://github.com/rust-lang/crates.io-index)", -+ "lock_api 0.3.4 (registry+https://github.com/rust-lang/crates.io-index)", -+ "parking_lot_core 0.7.2 (registry+https://github.com/rust-lang/crates.io-index)", - ] - - [[package]] - name = "parking_lot_core" --version = "0.7.0" -+version = "0.7.2" - source = "registry+https://github.com/rust-lang/crates.io-index" - dependencies = [ - "cfg-if 0.1.10 (registry+https://github.com/rust-lang/crates.io-index)", -@@ -409,7 +409,7 @@ dependencies = [ - "inventory 0.1.6 (registry+https://github.com/rust-lang/crates.io-index)", - "libc 0.2.68 (registry+https://github.com/rust-lang/crates.io-index)", - "num-traits 0.2.11 (registry+https://github.com/rust-lang/crates.io-index)", -- "parking_lot 0.10.0 (registry+https://github.com/rust-lang/crates.io-index)", -+ "parking_lot 0.10.2 (registry+https://github.com/rust-lang/crates.io-index)", - "paste 0.1.10 (registry+https://github.com/rust-lang/crates.io-index)", - "pyo3cls 0.9.2 (registry+https://github.com/rust-lang/crates.io-index)", - "regex 1.3.6 (registry+https://github.com/rust-lang/crates.io-index)", -@@ -768,7 +768,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" - "checksum itoa 0.4.5 (registry+https://github.com/rust-lang/crates.io-index)" = "b8b7a7c0c47db5545ed3fef7468ee7bb5b74691498139e4b3f6a20685dc6dd8e" - "checksum lazy_static 1.4.0 (registry+https://github.com/rust-lang/crates.io-index)" = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646" - "checksum libc 0.2.68 (registry+https://github.com/rust-lang/crates.io-index)" = "dea0c0405123bba743ee3f91f49b1c7cfb684eef0da0a50110f758ccf24cdff0" --"checksum lock_api 0.3.3 (registry+https://github.com/rust-lang/crates.io-index)" = "79b2de95ecb4691949fea4716ca53cdbcfccb2c612e19644a8bad05edcf9f47b" -+"checksum lock_api 0.3.4 (registry+https://github.com/rust-lang/crates.io-index)" = "c4da24a77a3d8a6d4862d95f72e6fdb9c09a643ecdb402d754004a557f2bec75" - "checksum maybe-uninit 2.0.0 (registry+https://github.com/rust-lang/crates.io-index)" = "60302e4db3a61da70c0cb7991976248362f30319e88850c487b9b95bbf059e00" - "checksum memchr 2.3.3 (registry+https://github.com/rust-lang/crates.io-index)" = "3728d817d99e5ac407411fa471ff9800a778d88a24685968b36824eaf4bee400" - "checksum memoffset 0.5.4 (registry+https://github.com/rust-lang/crates.io-index)" = "b4fc2c02a7e374099d4ee95a193111f72d2110197fe200272371758f6c3643d8" -@@ -777,8 +777,8 @@ source = "registry+https://github.com/rust-lang/crates.io-index" - "checksum number_prefix 0.3.0 (registry+https://github.com/rust-lang/crates.io-index)" = "17b02fc0ff9a9e4b35b3342880f48e896ebf69f2967921fe8646bf5b7125956a" - "checksum onig 6.0.0 (registry+https://github.com/rust-lang/crates.io-index)" = "bd91ccd8a02fce2f7e8a86655aec67bc6c171e6f8e704118a0e8c4b866a05a8a" - "checksum onig_sys 69.5.0 (registry+https://github.com/rust-lang/crates.io-index)" = "3814583fad89f3c60ae0701d80e87e1fd3028741723deda72d0d4a0ecf0cb0db" --"checksum parking_lot 0.10.0 (registry+https://github.com/rust-lang/crates.io-index)" = "92e98c49ab0b7ce5b222f2cc9193fc4efe11c6d0bd4f648e374684a6857b1cfc" --"checksum parking_lot_core 0.7.0 (registry+https://github.com/rust-lang/crates.io-index)" = "7582838484df45743c8434fbff785e8edf260c28748353d44bc0da32e0ceabf1" -+"checksum parking_lot 0.10.2 (registry+https://github.com/rust-lang/crates.io-index)" = "d3a704eb390aafdc107b0e392f56a82b668e3a71366993b5340f5833fd62505e" -+"checksum parking_lot_core 0.7.2 (registry+https://github.com/rust-lang/crates.io-index)" = "d58c7c768d4ba344e3e8d72518ac13e259d7c7ade24167003b8488e10b6740a3" - "checksum paste 0.1.10 (registry+https://github.com/rust-lang/crates.io-index)" = "ab4fb1930692d1b6a9cfabdde3d06ea0a7d186518e2f4d67660d8970e2fa647a" - "checksum paste-impl 0.1.10 (registry+https://github.com/rust-lang/crates.io-index)" = "a62486e111e571b1e93b710b61e8f493c0013be39629b714cb166bdb06aa5a8a" - "checksum pkg-config 0.3.17 (registry+https://github.com/rust-lang/crates.io-index)" = "05da548ad6865900e60eaba7f589cc0783590a92e940c26953ff81ddbab2d677" diff --git a/pkgs/development/python-modules/torchgpipe/default.nix b/pkgs/development/python-modules/torchgpipe/default.nix index e7aa53360ed..6e621ee8b68 100644 --- a/pkgs/development/python-modules/torchgpipe/default.nix +++ b/pkgs/development/python-modules/torchgpipe/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "torchgpipe"; - version = "0.0.5"; + version = "0.0.7"; disabled = isPy27; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "kakaobrain"; repo = pname; rev = "v${version}"; - sha256 = "0mqdavnqb8a320li2r7xw11w2lg03l59xxyg2fxpg4z57v0rbasi"; + sha256 = "0ki0njhmz1i3pkpr3y6h6ac7p5qh1kih06mknc2s18mfw34f2l55"; }; propagatedBuildInputs = [ pytorch ]; diff --git a/pkgs/development/python-modules/transformers/default.nix b/pkgs/development/python-modules/transformers/default.nix index fdb807bd0a1..e3fd150fbcf 100644 --- a/pkgs/development/python-modules/transformers/default.nix +++ b/pkgs/development/python-modules/transformers/default.nix @@ -7,6 +7,7 @@ , requests , numpy , parameterized +, protobuf , sacremoses , sentencepiece , timeout-decorator @@ -17,19 +18,19 @@ buildPythonPackage rec { pname = "transformers"; - version = "3.3.1"; + version = "3.4.0"; src = fetchFromGitHub { owner = "huggingface"; repo = pname; rev = "v${version}"; - sha256 = "1j9nzhl0zw5z9rnvzfih7v6bax353rxp05b3f0cvkii3b5dbkc2j"; + sha256 = "1v09gryxsg57d2cjwagna1535m8mbxlazdbhsww210lxa818m5qj"; }; propagatedBuildInputs = [ - boto3 filelock numpy + protobuf regex requests sacremoses @@ -44,11 +45,6 @@ buildPythonPackage rec { timeout-decorator ]; - postPatch = '' - substituteInPlace setup.py \ - --replace "tokenizers == 0.8.1.rc2" "tokenizers>=0.8" - ''; - preCheck = '' export HOME="$TMPDIR" @@ -67,8 +63,10 @@ buildPythonPackage rec { # Disable tests that require network access. disabledTests = [ - "PegasusTokenizationTest" - "T5TokenizationTest" + "BlenderbotSmallTokenizerTest" + "Blenderbot3BTokenizerTests" + "TokenizationTest" + "TestTokenizationBart" "test_all_tokenizers" "test_batch_encoding_is_fast" "test_batch_encoding_pickle" diff --git a/pkgs/development/python-modules/treq/default.nix b/pkgs/development/python-modules/treq/default.nix index 1ec88ff1b77..919ef529407 100644 --- a/pkgs/development/python-modules/treq/default.nix +++ b/pkgs/development/python-modules/treq/default.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { pname = "treq"; - version = "20.4.1"; + version = "20.9.0"; src = fetchPypi { inherit pname version; - sha256 = "115wwb3sripl3xvwpygwyrxrapyis0i7w1yq591z3dwl9k9fgzk8"; + sha256 = "83cd2ca75aef4f1fbdbe144c186426d930c3e8b20385df8cec9e12d442986da2"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/trimesh/default.nix b/pkgs/development/python-modules/trimesh/default.nix index 484fee26dac..3afb2de58c3 100644 --- a/pkgs/development/python-modules/trimesh/default.nix +++ b/pkgs/development/python-modules/trimesh/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "trimesh"; - version = "3.8.10"; + version = "3.8.12"; src = fetchPypi { inherit pname version; - sha256 = "24fb0f7f8b8745e181b215a294eb1b22acd3e739d757892394d4c32f74e5c069"; + sha256 = "932670e753abdec162d1d9c661920db871236de782890ad88577b2af0d824c7f"; }; propagatedBuildInputs = [ numpy ]; diff --git a/pkgs/development/python-modules/trio/default.nix b/pkgs/development/python-modules/trio/default.nix index 658dea91049..94da63cd3ec 100644 --- a/pkgs/development/python-modules/trio/default.nix +++ b/pkgs/development/python-modules/trio/default.nix @@ -18,12 +18,12 @@ buildPythonPackage rec { pname = "trio"; - version = "0.16.0"; - disabled = pythonOlder "3.5"; + version = "0.17.0"; + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "df067dd0560c321af39d412cd81fc3a7d13f55af9150527daab980683e9fcf3c"; + sha256 = "0zcxirpdvvl54pbfkgw7vz984879xwvdygqfpggnam24is2zjp78"; }; checkInputs = [ astor pytestCheckHook pyopenssl trustme jedi pylint yapf ]; diff --git a/pkgs/development/python-modules/trytond/default.nix b/pkgs/development/python-modules/trytond/default.nix index 54eae801dfe..5a9495746cd 100644 --- a/pkgs/development/python-modules/trytond/default.nix +++ b/pkgs/development/python-modules/trytond/default.nix @@ -25,12 +25,12 @@ with stdenv.lib; buildPythonApplication rec { pname = "trytond"; - version = "5.6.5"; + version = "5.6.8"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - sha256 = "a373d73b141d71f8e30d728dd8380955bc0f33daaa097201fa9a952e3663e6d8"; + sha256 = "330067d7319a50b9fb15e89d224e89ab28bc363926774adf7fa119f681b106b6"; }; # Tells the tests which database to use diff --git a/pkgs/development/python-modules/tubeup/default.nix b/pkgs/development/python-modules/tubeup/default.nix new file mode 100644 index 00000000000..d25180948a3 --- /dev/null +++ b/pkgs/development/python-modules/tubeup/default.nix @@ -0,0 +1,38 @@ +{ lib +, buildPythonPackage +, internetarchive +, fetchPypi +, youtube-dl +, docopt +, isPy27 +}: + +buildPythonPackage rec { + pname = "tubeup"; + version = "0.0.19"; + + disabled = isPy27; + + src = fetchPypi { + inherit pname version; + sha256 = "6e3ebbf677a43018bfd71070919187bd57120010b0d708c0494c0f17bb72e84e"; + }; + + postPatch = '' + substituteInPlace setup.py --replace "docopt==0.6.2" "docopt" + ''; + + propagatedBuildInputs = [ internetarchive docopt youtube-dl ]; + + pythonImportsCheck = [ "tubeup" ]; + + # Tests failing upstream + doCheck = false; + + meta = with lib; { + description = "Youtube (and other video site) to Internet Archive Uploader"; + homepage = "https://github.com/bibanon/tubeup"; + license = licenses.gpl3; + maintainers = [ maintainers.marsam ]; + }; +} diff --git a/pkgs/development/python-modules/uamqp/default.nix b/pkgs/development/python-modules/uamqp/default.nix index 1e7132525a2..47a0d6cc269 100644 --- a/pkgs/development/python-modules/uamqp/default.nix +++ b/pkgs/development/python-modules/uamqp/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "uamqp"; - version = "1.2.10"; + version = "1.2.12"; src = fetchPypi { inherit pname version; - sha256 = "398dd818e9a6c14f00c434e7ad3fcbe1d0344f2f4c23bca8c5026280ae032f4f"; + sha256 = "c6657f1d8aae566b89d02c6282827dddcec2a90f75dc0d2d91a47e00c8999d99"; }; buildInputs = [ diff --git a/pkgs/development/python-modules/umap-learn/default.nix b/pkgs/development/python-modules/umap-learn/default.nix index 9979183c497..f471fbef4c8 100644 --- a/pkgs/development/python-modules/umap-learn/default.nix +++ b/pkgs/development/python-modules/umap-learn/default.nix @@ -6,21 +6,23 @@ , scikitlearn , scipy , numba +, pytestCheckHook }: buildPythonPackage rec { pname = "umap-learn"; - version = "0.3.10"; + version = "0.4.5"; src = fetchFromGitHub { owner = "lmcinnes"; repo = "umap"; rev = version; - sha256 = "0nck5va5km7qkbrhn15dsn0p2mms9kc641lcypy7l8haqgm44h8x"; + sha256 = "080by8h4rxr5ijx8vp8kn952chiqz029j26c04k4js4g9s7201bq"; }; checkInputs = [ nose + pytestCheckHook ]; propagatedBuildInputs = [ @@ -30,15 +32,15 @@ buildPythonPackage rec { numba ]; - postConfigure = '' - substituteInPlace umap/tests/test_umap.py \ - --replace "def test_umap_transform_on_iris()" "@SkipTest -def test_umap_transform_on_iris()" - ''; + disabledTests = [ + # Plot functionality requires additional packages. + # These test also fail with 'RuntimeError: cannot cache function' error. + "test_umap_plot_testability" + "test_plot_runs_at_all" - checkPhase = '' - nosetests -s umap - ''; + # Flaky test. Fails with AssertionError sometimes. + "test_sparse_hellinger" + ]; meta = with lib; { description = "Uniform Manifold Approximation and Projection"; diff --git a/pkgs/development/python-modules/uncompyle6/default.nix b/pkgs/development/python-modules/uncompyle6/default.nix index 9e793ec3fb3..5d1a32a2965 100644 --- a/pkgs/development/python-modules/uncompyle6/default.nix +++ b/pkgs/development/python-modules/uncompyle6/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "uncompyle6"; - version = "3.7.3"; + version = "3.7.4"; src = fetchPypi { inherit pname version; - sha256 = "a45f98f40edb47c2a0e2786ffe7d68fc2cb4ad05b2efcb50e95c337f6ecae353"; + sha256 = "af8330861bf940e7a3ae0f06d129b8e645191a36bf73ca15ff51997a837d41f8"; }; checkInputs = [ nose pytest hypothesis six ]; diff --git a/pkgs/development/python-modules/vertica-python/default.nix b/pkgs/development/python-modules/vertica-python/default.nix index 7247e079467..5e704cdcb25 100644 --- a/pkgs/development/python-modules/vertica-python/default.nix +++ b/pkgs/development/python-modules/vertica-python/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "vertica-python"; - version = "0.11.0"; + version = "1.0.0"; src = fetchPypi { inherit pname version; - sha256 = "cceb39d081b8d1628956205642e740a9fabcfd2c6ecd982c51134fba8215d0bd"; + sha256 = "f042cf60ddd69eeb17c9f1586bae25da5b7282ca53d9afe0be30b943b4194d52"; }; propagatedBuildInputs = [ future dateutil six ]; diff --git a/pkgs/development/python-modules/vispy/default.nix b/pkgs/development/python-modules/vispy/default.nix index 029132933a9..efe444fa8d7 100644 --- a/pkgs/development/python-modules/vispy/default.nix +++ b/pkgs/development/python-modules/vispy/default.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { pname = "vispy"; - version = "0.6.4"; + version = "0.6.5"; src = fetchPypi { inherit pname version; - sha256 = "07sb4qww6mgzm66qsrr3pd66yz39r6jj4ibb3qmfg1kwnxs6ayv2"; + sha256 = "90cc76e79ee16c839bca05753e0c5f9f1c1c57963f2d3b248e4afac0fd75df75"; }; patches = [ diff --git a/pkgs/development/python-modules/wled/default.nix b/pkgs/development/python-modules/wled/default.nix new file mode 100644 index 00000000000..329cdd5b610 --- /dev/null +++ b/pkgs/development/python-modules/wled/default.nix @@ -0,0 +1,47 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, aiohttp +, backoff +, packaging +, yarl +, aresponses +, pytest-asyncio +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "wled"; + version = "0.4.4"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "frenck"; + repo = "python-wled"; + rev = "v${version}"; + sha256 = "1adh23v4c9kia3ddqdq0brksd5rhgh4ff7l5hil8klx4dmkrjfz3"; + }; + + propagatedBuildInputs = [ + aiohttp + backoff + packaging + yarl + ]; + + checkInputs = [ + aresponses + pytest-asyncio + pytestCheckHook + ]; + + pythonImportCheck = [ "wled" ]; + + meta = with lib; { + description = "Asynchronous Python client for WLED"; + homepage = "https://github.com/frenck/python-wled"; + license = licenses.mit; + maintainers = with maintainers; [ hexa ]; + }; +} diff --git a/pkgs/development/python-modules/xdot/default.nix b/pkgs/development/python-modules/xdot/default.nix index 990e74d2549..6a4d7f01cc1 100644 --- a/pkgs/development/python-modules/xdot/default.nix +++ b/pkgs/development/python-modules/xdot/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ gobject-introspection pygobject3 graphviz gtk3 ]; meta = with lib; { - description = "xdot.py is an interactive viewer for graphs written in Graphviz's dot"; + description = "An interactive viewer for graphs written in Graphviz's dot"; homepage = "https://github.com/jrfonseca/xdot.py"; license = licenses.lgpl3Plus; }; diff --git a/pkgs/development/python-modules/yamale/default.nix b/pkgs/development/python-modules/yamale/default.nix new file mode 100644 index 00000000000..9b2c7b116c6 --- /dev/null +++ b/pkgs/development/python-modules/yamale/default.nix @@ -0,0 +1,38 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, isPy3k +, pytest +, pyyaml +, ruamel_yaml +}: + +buildPythonPackage rec { + pname = "yamale"; + version = "3.0.4"; + + disabled = !isPy3k; + + src = fetchFromGitHub { + owner = "23andMe"; + repo = pname; + rev = version; + sha256 = "1xjvah4r3gpwk4zxql3c9jpllb34k175fm6iq1zvsd2vv2fwf8s2"; + }; + + propagatedBuildInputs = [ + pyyaml + ruamel_yaml + ]; + + checkInputs = [ + pytest + ]; + + meta = with lib; { + description = "A schema and validator for YAML"; + homepage = "https://github.com/23andMe/Yamale"; + license = licenses.mit; + maintainers = with maintainers; [ rtburns-jpl ]; + }; +} diff --git a/pkgs/development/python-modules/yamllint/default.nix b/pkgs/development/python-modules/yamllint/default.nix index 892a9840a34..f0407dff173 100644 --- a/pkgs/development/python-modules/yamllint/default.nix +++ b/pkgs/development/python-modules/yamllint/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "yamllint"; - version = "1.24.2"; + version = "1.25.0"; src = fetchPypi { inherit pname version; - sha256 = "07xn11i0c7x72xjxkkzrq9zxl40vfdr41mfvhlayrk6dpbk8vdj0"; + sha256 = "b1549cbe5b47b6ba67bdeea31720f5c51431a4d0c076c1557952d841f7223519"; }; checkInputs = [ nose ]; diff --git a/pkgs/development/python-modules/yappi/default.nix b/pkgs/development/python-modules/yappi/default.nix index e0be34a2d31..b96d4efd44b 100644 --- a/pkgs/development/python-modules/yappi/default.nix +++ b/pkgs/development/python-modules/yappi/default.nix @@ -1,18 +1,22 @@ -{ lib, buildPythonPackage, fetchPypi, isPy27, nose }: +{ lib, buildPythonPackage, fetchFromGitHub, gevent, isPy27, python }: buildPythonPackage rec { pname = "yappi"; - version = "1.2.5"; + version = "1.3.0"; disabled = isPy27; # invalid syntax - src = fetchPypi { - inherit pname version; - sha256 = "ad5fa4caf2859e480ffc4ec3e85615a6f7dea852c8f035f2db723f824ed4ba11"; + src = fetchFromGitHub { + owner = "sumerc"; + repo = pname; + rev = "30f94024a0e2e4fa21c220de6a0dc97b4cb2c319"; + sha256 = "1kvwl3y3c2hivf9y2x1q1s8a2y724iwqd1krq6ryvsbg3inyh8qw"; }; patches = [ ./tests.patch ]; - - checkInputs = [ nose ]; + checkInputs = [ gevent ]; + checkPhase = '' + ${python.interpreter} run_tests.py + ''; meta = with lib; { homepage = "https://github.com/sumerc/yappi"; diff --git a/pkgs/development/python-modules/yappi/tests.patch b/pkgs/development/python-modules/yappi/tests.patch index bff4b28295b..96419e01a26 100644 --- a/pkgs/development/python-modules/yappi/tests.patch +++ b/pkgs/development/python-modules/yappi/tests.patch @@ -1,12 +1,14 @@ --- a/tests/test_functionality.py +++ b/tests/test_functionality.py -@@ -74,2 +74,3 @@ class BasicUsage(utils.YappiUnitTestCase): - -+ @_unittest.skip('wall-clock-time-sensitive') - def test_get_clock(self): +@@ -262,1 +262,2 @@ class BasicUsage(utils.YappiUnitTestCase): ++ @unittest.skip('wall-clock-time-sensitive') + def test_get_clock(self): +@@ -363,2 +363,3 @@ class BasicUsage(utils.YappiUnitTestCase): + @unittest.skipIf(os.name == "nt", "do not run on Windows") ++ @unittest.skip('broken-path') + def test_run_as_script(self): --- a/tests/test_hooks.py +++ b/tests/test_hooks.py -@@ -124,2 +124,3 @@ class ContextIdCallbackTest(utils.YappiUnitTestCase): - +@@ -127,1 +127,2 @@ class ContextIdCallbackTest(utils.YappiUnitTestCase): + @unittest.skip('wall-clock-time-sensitive') def test_pause_resume(self): diff --git a/pkgs/development/python-modules/yfinance/default.nix b/pkgs/development/python-modules/yfinance/default.nix index 55068d3d5e6..7ae56cacbb6 100644 --- a/pkgs/development/python-modules/yfinance/default.nix +++ b/pkgs/development/python-modules/yfinance/default.nix @@ -9,12 +9,12 @@ buildPythonPackage rec { pname = "yfinance"; - version = "0.1.54"; + version = "0.1.55"; # GitHub source releases aren't tagged src = fetchPypi { inherit pname version; - sha256 = "cee223cbd31e14955869f7978bcf83776d644345c7dea31ba5d41c309bfb0d3d"; + sha256 = "65d39bccf16bef35f6a08bf0df33650c0515b5ce8ea3c53924601f5fe00590cb"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/yq/default.nix b/pkgs/development/python-modules/yq/default.nix index 05f608ff4e9..61087639265 100644 --- a/pkgs/development/python-modules/yq/default.nix +++ b/pkgs/development/python-modules/yq/default.nix @@ -46,7 +46,7 @@ buildPythonPackage rec { pythonImportsCheck = [ "yq" ]; meta = with lib; { - description = "Command-line YAML processor - jq wrapper for YAML documents."; + description = "Command-line YAML processor - jq wrapper for YAML documents"; homepage = "https://github.com/kislyuk/yq"; license = [ licenses.asl20 ]; maintainers = [ maintainers.womfoo ]; diff --git a/pkgs/development/python-modules/zarr/default.nix b/pkgs/development/python-modules/zarr/default.nix index c51694c6306..e12ce586091 100644 --- a/pkgs/development/python-modules/zarr/default.nix +++ b/pkgs/development/python-modules/zarr/default.nix @@ -12,12 +12,12 @@ buildPythonPackage rec { pname = "zarr"; - version = "2.4.0"; + version = "2.5.0"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "53aa21b989a47ddc5e916eaff6115b824c0864444b1c6f3aaf4f6cf9a51ed608"; + sha256 = "d54f060739208392494c3dbcbfdf41c8df9fa23d9a32b91aea0549b4c5e2b77f"; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/zeroconf/default.nix b/pkgs/development/python-modules/zeroconf/default.nix index 3ef2738e71b..6777378c2df 100644 --- a/pkgs/development/python-modules/zeroconf/default.nix +++ b/pkgs/development/python-modules/zeroconf/default.nix @@ -1,11 +1,11 @@ -{ stdenv +{ lib , buildPythonPackage , fetchPypi , ifaddr , typing , isPy27 , pythonOlder -, python +, pytestCheckHook }: buildPythonPackage rec { @@ -19,16 +19,21 @@ buildPythonPackage rec { }; propagatedBuildInputs = [ ifaddr ] - ++ stdenv.lib.optionals (pythonOlder "3.5") [ typing ]; + ++ lib.optionals (pythonOlder "3.5") [ typing ]; - # tests not included with pypi release - doCheck = false; + checkInputs = [ pytestCheckHook ]; + pytestFlagsArray = [ "zeroconf/test.py" ]; + disabledTests = [ + # disable tests that expect some sort of networking in the build container + "test_launch_and_close" + "test_launch_and_close_v4_v6" + "test_launch_and_close_v6_only" + "test_integration_with_listener_ipv6" + ]; - checkPhase = '' - ${python.interpreter} test_zeroconf.py - ''; + pythonImportsCheck = [ "zeroconf" ]; - meta = with stdenv.lib; { + meta = with lib; { description = "A pure python implementation of multicast DNS service discovery"; homepage = "https://github.com/jstasiak/python-zeroconf"; license = licenses.lgpl21; diff --git a/pkgs/development/python-modules/zigpy-cc/default.nix b/pkgs/development/python-modules/zigpy-cc/default.nix index 76887e39920..79b9d910053 100644 --- a/pkgs/development/python-modules/zigpy-cc/default.nix +++ b/pkgs/development/python-modules/zigpy-cc/default.nix @@ -1,22 +1,44 @@ -{ stdenv, buildPythonPackage, fetchPypi -, pyserial, pyserial-asyncio, zigpy -, asynctest, pytest, pytest-asyncio }: +{ lib +, asynctest +, buildPythonPackage +, fetchFromGitHub +, pyserial +, pyserial-asyncio +, pytest-asyncio +, pytestCheckHook +, pythonOlder +, zigpy }: buildPythonPackage rec { pname = "zigpy-cc"; - version = "0.5.1"; + version = "0.5.2"; + # https://github.com/Martiusweb/asynctest/issues/152 + # broken by upstream python bug with asynctest and + # is used exclusively by home-assistant with python 3.8 + disabled = pythonOlder "3.8"; - propagatedBuildInputs = [ pyserial pyserial-asyncio zigpy ]; - checkInputs = [ asynctest pytest pytest-asyncio ]; - - src = fetchPypi { - inherit pname version; - sha256 = "06759615b28c45beaa5f03e594769a373d41674b96aeafefccd5c4e1c67e25ca"; + src = fetchFromGitHub { + owner = "zigpy"; + repo = "zigpy-cc"; + rev = version; + sha256 = "U3S8tQ3zPlexZDt5GvCd+rOv7CBVeXJJM1NGe7nRl2o="; }; - meta = with stdenv.lib; { + propagatedBuildInputs = [ + pyserial + pyserial-asyncio + zigpy + ]; + + checkInputs = [ + asynctest + pytest-asyncio + pytestCheckHook + ]; + + meta = with lib; { description = "A library which communicates with Texas Instruments CC2531 radios for zigpy"; - homepage = "http://github.com/sanyatuning/zigpy-cc"; + homepage = "https://github.com/zigpy/zigpy-cc"; license = licenses.gpl3Plus; maintainers = with maintainers; [ etu mvnetbiz ]; platforms = platforms.linux; diff --git a/pkgs/development/python-modules/zigpy-xbee/default.nix b/pkgs/development/python-modules/zigpy-xbee/default.nix index 70266644801..697ae5bb92d 100644 --- a/pkgs/development/python-modules/zigpy-xbee/default.nix +++ b/pkgs/development/python-modules/zigpy-xbee/default.nix @@ -1,20 +1,42 @@ -{ stdenv, buildPythonPackage, fetchPypi -, pyserial, pyserial-asyncio, zigpy -, pytest }: +{ lib +, asynctest +, buildPythonPackage +, fetchFromGitHub +, pyserial +, pyserial-asyncio +, pytest-asyncio +, pytestCheckHook +, pythonOlder +, zigpy }: buildPythonPackage rec { pname = "zigpy-xbee"; - version = "0.12.1"; + version = "0.13.0"; + # https://github.com/Martiusweb/asynctest/issues/152 + # broken by upstream python bug with asynctest and + # is used exclusively by home-assistant with python 3.8 + disabled = pythonOlder "3.8"; - buildInputs = [ pyserial pyserial-asyncio zigpy ]; - checkInputs = [ pytest ]; - - src = fetchPypi { - inherit pname version; - sha256 = "09488hl27qjv8shw38iiyzvzwcjkc0k4n00l2bfn1ac443xzw0vh"; + src = fetchFromGitHub { + owner = "zigpy"; + repo = "zigpy-xbee"; + rev = version; + sha256 = "Krdqb9bYKwUC2cdNppB2+tLwWjzmzIHhXnQ1KRduofU="; }; - meta = with stdenv.lib; { + buildInputs = [ + pyserial + pyserial-asyncio + zigpy + ]; + + checkInputs = [ + asynctest + pytest-asyncio + pytestCheckHook + ]; + + meta = with lib; { description = "A library which communicates with XBee radios for zigpy"; homepage = "http://github.com/zigpy/zigpy-xbee"; license = licenses.gpl3Plus; diff --git a/pkgs/development/python-modules/zigpy-zigate/default.nix b/pkgs/development/python-modules/zigpy-zigate/default.nix index 43f291841ff..a906ff4f419 100644 --- a/pkgs/development/python-modules/zigpy-zigate/default.nix +++ b/pkgs/development/python-modules/zigpy-zigate/default.nix @@ -1,22 +1,44 @@ -{ stdenv, buildPythonPackage, fetchPypi -, pyserial, pyserial-asyncio, zigpy -, pytest }: +{ lib +, asynctest +, buildPythonPackage +, fetchFromGitHub +, pyserial +, pyserial-asyncio +, pytest-asyncio +, pytestCheckHook +, pythonOlder +, zigpy }: buildPythonPackage rec { pname = "zigpy-zigate"; - version = "0.6.1"; + version = "0.6.2"; + # https://github.com/Martiusweb/asynctest/issues/152 + # broken by upstream python bug with asynctest and + # is used exclusively by home-assistant with python 3.8 + disabled = pythonOlder "3.8"; - buildInputs = [ pyserial pyserial-asyncio zigpy ]; - checkInputs = [ pytest ]; - - src = fetchPypi { - inherit pname version; - sha256 = "0xxqv65drrr96b9ncwsx9ayd369lpwimj1jjb0d7j6l9lil0wmf5"; + src = fetchFromGitHub { + owner = "zigpy"; + repo = "zigpy-zigate"; + rev = version; + sha256 = "EV6DV+BytUcPMtzYVKDnq/Uv2efg3stjL5uVlL62II4="; }; - meta = with stdenv.lib; { + buildInputs = [ + pyserial + pyserial-asyncio + zigpy + ]; + + checkInputs = [ + asynctest + pytest-asyncio + pytestCheckHook + ]; + + meta = with lib; { description = "A library which communicates with ZiGate radios for zigpy"; - homepage = "http://github.com/doudz/zigpy-zigate"; + homepage = "https://github.com/zigpy/zigpy-zigate"; license = licenses.gpl3Plus; maintainers = with maintainers; [ etu mvnetbiz ]; platforms = platforms.linux; diff --git a/pkgs/development/python-modules/zigpy-znp/default.nix b/pkgs/development/python-modules/zigpy-znp/default.nix new file mode 100644 index 00000000000..7a942a21372 --- /dev/null +++ b/pkgs/development/python-modules/zigpy-znp/default.nix @@ -0,0 +1,55 @@ +{ stdenv +, async-timeout +, asynctest +, buildPythonPackage +, coloredlogs +, coveralls +, fetchFromGitHub +, pyserial +, pyserial-asyncio +, pytest-asyncio +, pytest-mock +, pytest-timeout +, pytestcov +, pytestCheckHook +, voluptuous +, zigpy }: + +buildPythonPackage rec { + pname = "zigpy-znp"; + version = "0.2.2"; + + src = fetchFromGitHub { + owner = "zha-ng"; + repo = "zigpy-znp"; + rev = "v${version}"; + sha256 = "a98RYPvcYE1NPERmPo1jPwMf86N+0297u4pOKuaB6u4="; + }; + + propagatedBuildInputs = [ + async-timeout + coloredlogs + pyserial + pyserial-asyncio + voluptuous + zigpy + ]; + + checkInputs = [ + asynctest + coveralls + pytest-asyncio + pytest-mock + pytest-timeout + pytestcov + pytestCheckHook + ]; + + meta = with stdenv.lib; { + description = "A library for zigpy which communicates with TI ZNP radios"; + homepage = "https://github.com/zha-ng/zigpy-znp"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ mvnetbiz ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/development/python-modules/zigpy/default.nix b/pkgs/development/python-modules/zigpy/default.nix index e85784e51ad..54f0df34016 100644 --- a/pkgs/development/python-modules/zigpy/default.nix +++ b/pkgs/development/python-modules/zigpy/default.nix @@ -1,20 +1,44 @@ -{ stdenv, buildPythonPackage, fetchPypi -, aiohttp, crccheck, pycryptodome, pycrypto, voluptuous -, pytest, pytest-asyncio, asynctest }: +{ lib +, aiohttp +, asynctest +, buildPythonPackage +, crccheck +, fetchFromGitHub +, pycrypto +, pycryptodome +, pytest-aiohttp +, pytest-asyncio +, pytestCheckHook +, tox +, voluptuous }: buildPythonPackage rec { pname = "zigpy"; - version = "0.22.2"; + version = "0.26.0"; - propagatedBuildInputs = [ aiohttp crccheck pycrypto pycryptodome voluptuous ]; - checkInputs = [ pytest pytest-asyncio asynctest ]; - - src = fetchPypi { - inherit pname version; - sha256 = "a43129932c6e4af0d2d57542218faf7695e2424ce18a5a8915d016e1303f5e44"; + src = fetchFromGitHub { + owner = "zigpy"; + repo = "zigpy"; + rev = version; + sha256 = "ba8Ru6RCbFOHhctFtklnrxVD3uEpxF4XDvO5RMgXPBs="; }; - meta = with stdenv.lib; { + propagatedBuildInputs = [ + aiohttp + crccheck + pycrypto + pycryptodome + voluptuous + ]; + + checkInputs = [ + asynctest + pytest-aiohttp + pytest-asyncio + pytestCheckHook + ]; + + meta = with lib; { description = "Library implementing a ZigBee stack"; homepage = "https://github.com/zigpy/zigpy"; license = licenses.gpl3Plus; diff --git a/pkgs/development/r-modules/bioc-annotation-packages.nix b/pkgs/development/r-modules/bioc-annotation-packages.nix index 863d7c9fcfe..773e64ec802 100644 --- a/pkgs/development/r-modules/bioc-annotation-packages.nix +++ b/pkgs/development/r-modules/bioc-annotation-packages.nix @@ -4,10 +4,10 @@ # Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.8"; }; +let derive2 = derive { biocVersion = "3.11"; }; in with self; { AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.0"; sha256="0g92nz33rx14zl5can7s701bipdgz7rxqygvvc22c4a0qj52ijnq"; depends=[]; }; - AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.0.8"; sha256="1v1177l4y0l546mzp8ybhvhnjwrsck5bkic8w6n6n2xq07d6aahz"; depends=[AnnotationHubData ensembldb]; }; + AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.0.14"; sha256="0fb94bxk6ggx09a0icraaxfzncvvgxk223146b17lbxsyl6i02z8"; depends=[AnnotationHubData ensembldb]; }; BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.0"; sha256="06549kkzy36n378zb61lrf9zardncp7i20r73rmmiq1pnfjp3gww"; depends=[BSgenome]; }; BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; }; BSgenome_Amellifera_UCSC_apiMel2 = derive2 { name="BSgenome.Amellifera.UCSC.apiMel2"; version="1.4.0"; sha256="1967w7aly7qydykk7rar712kvgsav3zjr4kirybkj17nwiynd74g"; depends=[BSgenome]; }; @@ -22,6 +22,7 @@ in with self; { BSgenome_Btaurus_UCSC_bosTau6 = derive2 { name="BSgenome.Btaurus.UCSC.bosTau6"; version="1.4.0"; sha256="0waaf9wfmdl5jbi3la64vsiqb83lyw9fqg3sn90bf1q7k3k617p3"; depends=[BSgenome]; }; BSgenome_Btaurus_UCSC_bosTau6_masked = derive2 { name="BSgenome.Btaurus.UCSC.bosTau6.masked"; version="1.3.99"; sha256="07isv0lcvlsl0aha1p474l0pps0j7bsh455m33vfxwahivqsfy27"; depends=[BSgenome BSgenome_Btaurus_UCSC_bosTau6]; }; BSgenome_Btaurus_UCSC_bosTau8 = derive2 { name="BSgenome.Btaurus.UCSC.bosTau8"; version="1.4.2"; sha256="16wjy1aw9nvx03r7w8yh5w7sw3pn8i9nczd0n0728l6nnyqxlsz6"; depends=[BSgenome]; }; + BSgenome_Btaurus_UCSC_bosTau9 = derive2 { name="BSgenome.Btaurus.UCSC.bosTau9"; version="1.4.2"; sha256="0vx9z101faybqqdqfk306m7m3j490svmx7bn7knh5if66g0mzi7g"; depends=[BSgenome]; }; BSgenome_Carietinum_NCBI_v1 = derive2 { name="BSgenome.Carietinum.NCBI.v1"; version="1.0.0"; sha256="1asyyb1p1bzc7dv9s2igjxrf9f144vvz2xbv9qxg15w9qzzx7r33"; depends=[BSgenome]; }; BSgenome_Celegans_UCSC_ce10 = derive2 { name="BSgenome.Celegans.UCSC.ce10"; version="1.4.0"; sha256="1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"; depends=[BSgenome]; }; BSgenome_Celegans_UCSC_ce11 = derive2 { name="BSgenome.Celegans.UCSC.ce11"; version="1.4.2"; sha256="0d4bxfglpqiv1f0n6imdgz101g9383hfj3ra91268wryzlm0yk5w"; depends=[BSgenome]; }; @@ -31,18 +32,21 @@ in with self; { BSgenome_Cfamiliaris_UCSC_canFam2_masked = derive2 { name="BSgenome.Cfamiliaris.UCSC.canFam2.masked"; version="1.3.99"; sha256="14108j73z7959d070xiqar5s14pac18cs8a22lcggbmp5x93hmqz"; depends=[BSgenome BSgenome_Cfamiliaris_UCSC_canFam2]; }; BSgenome_Cfamiliaris_UCSC_canFam3 = derive2 { name="BSgenome.Cfamiliaris.UCSC.canFam3"; version="1.4.0"; sha256="1ir092yh1h03ag1lnj2rh5hjp2mqrw7fcyb6mqyjm0h8g1pmpicr"; depends=[BSgenome]; }; BSgenome_Cfamiliaris_UCSC_canFam3_masked = derive2 { name="BSgenome.Cfamiliaris.UCSC.canFam3.masked"; version="1.3.99"; sha256="07y28g6b4sbp38yg5rwldda7s1cwcpil6rzsb4csskvs0xi5286l"; depends=[BSgenome BSgenome_Cfamiliaris_UCSC_canFam3]; }; + BSgenome_Cjacchus_UCSC_calJac3 = derive2 { name="BSgenome.Cjacchus.UCSC.calJac3"; version="1.4.2"; sha256="1s1srg6lr3dndbpv83bqlxz5lhyhxh431yrd919yl4fwmr5rvx0z"; depends=[BSgenome]; }; BSgenome_Dmelanogaster_UCSC_dm2 = derive2 { name="BSgenome.Dmelanogaster.UCSC.dm2"; version="1.4.0"; sha256="1vnqbm1123zmpn1iwyygr1p4js0j6vifyz7iwzgkiw543yb1mwnl"; depends=[BSgenome]; }; BSgenome_Dmelanogaster_UCSC_dm2_masked = derive2 { name="BSgenome.Dmelanogaster.UCSC.dm2.masked"; version="1.3.99"; sha256="1qclf62c3qrdhnrb6p4rhj7wrarlsbm716d37k0gbdzkfm2vhyr7"; depends=[BSgenome BSgenome_Dmelanogaster_UCSC_dm2]; }; BSgenome_Dmelanogaster_UCSC_dm3 = derive2 { name="BSgenome.Dmelanogaster.UCSC.dm3"; version="1.4.0"; sha256="19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8"; depends=[BSgenome]; }; BSgenome_Dmelanogaster_UCSC_dm3_masked = derive2 { name="BSgenome.Dmelanogaster.UCSC.dm3.masked"; version="1.3.99"; sha256="1756csb09f1br9rj1l3f08qyh4hlymdbd0cfn8x3fq39dn45m5ap"; depends=[BSgenome BSgenome_Dmelanogaster_UCSC_dm3]; }; BSgenome_Dmelanogaster_UCSC_dm6 = derive2 { name="BSgenome.Dmelanogaster.UCSC.dm6"; version="1.4.1"; sha256="1bhj0rdgf7lspw4xby9y9mf7v7jxxz8001bc8vw8kf04rjsx6060"; depends=[BSgenome]; }; BSgenome_Drerio_UCSC_danRer10 = derive2 { name="BSgenome.Drerio.UCSC.danRer10"; version="1.4.2"; sha256="1grlxihdx65fwgb9gbp1jibbqan9a5667w4jgswhg0qsia608lzs"; depends=[BSgenome]; }; + BSgenome_Drerio_UCSC_danRer11 = derive2 { name="BSgenome.Drerio.UCSC.danRer11"; version="1.4.2"; sha256="08a928mqzv2jxngjcs4yr6ni1b9z9al6jdngwi438j8hm41cwk4v"; depends=[BSgenome]; }; BSgenome_Drerio_UCSC_danRer5 = derive2 { name="BSgenome.Drerio.UCSC.danRer5"; version="1.4.0"; sha256="1mxmy4ika192xvlrsynyvnb7kvcvbsl89g39q53vrkibhml1q0v5"; depends=[BSgenome]; }; BSgenome_Drerio_UCSC_danRer5_masked = derive2 { name="BSgenome.Drerio.UCSC.danRer5.masked"; version="1.3.99"; sha256="03y08jlknb52x37wg95xaf62n5fbsfpmx57bjyxz2gj0n8zhcdgv"; depends=[BSgenome BSgenome_Drerio_UCSC_danRer5]; }; BSgenome_Drerio_UCSC_danRer6 = derive2 { name="BSgenome.Drerio.UCSC.danRer6"; version="1.4.0"; sha256="0h2chcpdi2vy29fg43r6q37vvb7p4d4cpnszlsmiy7ax358sd5ji"; depends=[BSgenome]; }; BSgenome_Drerio_UCSC_danRer6_masked = derive2 { name="BSgenome.Drerio.UCSC.danRer6.masked"; version="1.3.99"; sha256="175gy5xfp5kzbgmagvls3233i925wppyk9alw75f7jnxfddxvq4k"; depends=[BSgenome BSgenome_Drerio_UCSC_danRer6]; }; BSgenome_Drerio_UCSC_danRer7 = derive2 { name="BSgenome.Drerio.UCSC.danRer7"; version="1.4.0"; sha256="17x3hj08jag05y8q4aziy455jy15dpwkdbh97v3byzcda0kpwbpg"; depends=[BSgenome]; }; BSgenome_Drerio_UCSC_danRer7_masked = derive2 { name="BSgenome.Drerio.UCSC.danRer7.masked"; version="1.3.99"; sha256="153cf2ni7xffi7j7dafg04v6i65gh8d21v7l9szm4c18bywvcn5z"; depends=[BSgenome BSgenome_Drerio_UCSC_danRer7]; }; + BSgenome_Dvirilis_Ensembl_dvircaf1 = derive2 { name="BSgenome.Dvirilis.Ensembl.dvircaf1"; version="1.4.3"; sha256="0dwqshpx3mm9k9p3x53hc62czpvqs6v2jw5i977x0y4hfig0zv8m"; depends=[BSgenome]; }; BSgenome_Ecoli_NCBI_20080805 = derive2 { name="BSgenome.Ecoli.NCBI.20080805"; version="1.3.1000"; sha256="1l7mjyys1kaq4mbia9jamyw6sd0ij1wypwxvwy8aksan3gcfnh27"; depends=[BSgenome]; }; BSgenome_Gaculeatus_UCSC_gasAcu1 = derive2 { name="BSgenome.Gaculeatus.UCSC.gasAcu1"; version="1.4.0"; sha256="1w0jpv58kbjvjlsprn5g4nd3g6jhiyw3k6mlfnpnffcbdh27cq0k"; depends=[BSgenome]; }; BSgenome_Gaculeatus_UCSC_gasAcu1_masked = derive2 { name="BSgenome.Gaculeatus.UCSC.gasAcu1.masked"; version="1.3.99"; sha256="13g2xc6v8qlrc0a0zly4ibhzgwg5dsrx1bmw4rrwnkk652alaivx"; depends=[BSgenome BSgenome_Gaculeatus_UCSC_gasAcu1]; }; @@ -51,18 +55,21 @@ in with self; { BSgenome_Ggallus_UCSC_galGal4 = derive2 { name="BSgenome.Ggallus.UCSC.galGal4"; version="1.4.0"; sha256="1qfl046akdf43azigprc13sssgbmxdz9dmlrvy13ag8fgfkjxign"; depends=[BSgenome]; }; BSgenome_Ggallus_UCSC_galGal4_masked = derive2 { name="BSgenome.Ggallus.UCSC.galGal4.masked"; version="1.3.99"; sha256="0fvqimjf1xvgka4nw66nd0rbyb7r93v8cyw33776lhfv68ny058v"; depends=[BSgenome BSgenome_Ggallus_UCSC_galGal4]; }; BSgenome_Ggallus_UCSC_galGal5 = derive2 { name="BSgenome.Ggallus.UCSC.galGal5"; version="1.4.2"; sha256="0gi82xr2b3fn3wi608nmqp3cgjx63rm82wy24p9l0s1qqh2z3jdb"; depends=[BSgenome]; }; + BSgenome_Ggallus_UCSC_galGal6 = derive2 { name="BSgenome.Ggallus.UCSC.galGal6"; version="1.4.2"; sha256="00b0awki35xkfjsvv9x1h0sykg5jbf36a37hj4spw028bkg8k7v2"; depends=[BSgenome]; }; BSgenome_Hsapiens_1000genomes_hs37d5 = derive2 { name="BSgenome.Hsapiens.1000genomes.hs37d5"; version="0.99.1"; sha256="1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr"; depends=[BSgenome]; }; BSgenome_Hsapiens_NCBI_GRCh38 = derive2 { name="BSgenome.Hsapiens.NCBI.GRCh38"; version="1.3.1000"; sha256="0y75qdq578fh6420vbvsbwmdw8jvr3g06qli2h3vj3pxmjykh9c1"; depends=[BSgenome]; }; BSgenome_Hsapiens_UCSC_hg17 = derive2 { name="BSgenome.Hsapiens.UCSC.hg17"; version="1.3.1000"; sha256="1q8p0zp5xpp22znwnygl3jhc159db4q3kkpj5wfij5a6z19zs1w3"; depends=[BSgenome]; }; BSgenome_Hsapiens_UCSC_hg17_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg17.masked"; version="1.3.99"; sha256="1pg39kmbmnync0xxdbgsn6gpz78hfbzd7iffidpv8mfk734srwzn"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg17]; }; BSgenome_Hsapiens_UCSC_hg18 = derive2 { name="BSgenome.Hsapiens.UCSC.hg18"; version="1.3.1000"; sha256="1bd7hn4ksgpyhnbjb9qdqfz5cg6x5lsizbls55v9s9hnvfzq3yi6"; depends=[BSgenome]; }; BSgenome_Hsapiens_UCSC_hg18_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg18.masked"; version="1.3.99"; sha256="031sr3y95c32igk3lrrsafdm9i1zprjran8gak06arqc0hvzbfk0"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg18]; }; - BSgenome_Hsapiens_UCSC_hg19 = derive2 { name="BSgenome.Hsapiens.UCSC.hg19"; version="1.4.0"; sha256="1y0nqpk8cw5a34sd9hmin3z4v7iqm6hf6l22cl81vlbxqbjibxc8"; depends=[BSgenome]; }; - BSgenome_Hsapiens_UCSC_hg19_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg19.masked"; version="1.3.99"; sha256="0452pyah0kv1vsrsjbrqw4k2rm8lc2vc771dzib45gnnfz86qxrr"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg19]; }; - BSgenome_Hsapiens_UCSC_hg38 = derive2 { name="BSgenome.Hsapiens.UCSC.hg38"; version="1.4.1"; sha256="1ql08pvi4vv0ynvg4qs9kysw1c7s3crkgin6zxvgzqk6fray9mvi"; depends=[BSgenome]; }; - BSgenome_Hsapiens_UCSC_hg38_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg38.masked"; version="1.3.99"; sha256="0plfrhkwgpgp22mj5n704k4ml0vl6hs5wb5vzqnw3vr8qwv0bli1"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg38]; }; + BSgenome_Hsapiens_UCSC_hg19 = derive2 { name="BSgenome.Hsapiens.UCSC.hg19"; version="1.4.3"; sha256="06lx7q7i52lg3vkjkqy492z9ianzgi4nhs9m1jrxjjb4hgbnbyjv"; depends=[BSgenome]; }; + BSgenome_Hsapiens_UCSC_hg19_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg19.masked"; version="1.3.993"; sha256="19533ihgad67bzhavycv6z708012ylz9cw1qdfmk2b7ikf3kiaz9"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg19]; }; + BSgenome_Hsapiens_UCSC_hg38 = derive2 { name="BSgenome.Hsapiens.UCSC.hg38"; version="1.4.3"; sha256="1k4ya5w0bgcqk06518ax803xfanw6x1qjzm6lsd3nplkjg5136f2"; depends=[BSgenome]; }; + BSgenome_Hsapiens_UCSC_hg38_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg38.masked"; version="1.3.993"; sha256="1ncsfa5nialkzllxdj9h5c48hrcv7vrvh7wfnw32y6bqdzg4rwhs"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg38]; }; + BSgenome_Mdomestica_UCSC_monDom5 = derive2 { name="BSgenome.Mdomestica.UCSC.monDom5"; version="1.4.2"; sha256="16kzb66kjpmf9j92pwh98ah5rhrnfyzdpr0rk659zham6dzga9ck"; depends=[BSgenome]; }; BSgenome_Mfascicularis_NCBI_5_0 = derive2 { name="BSgenome.Mfascicularis.NCBI.5.0"; version="1.4.2"; sha256="1lrdj7aibx4i60hpbaqgk3qir9zjs67mxdgp5jmgmw7gf2nwyn3x"; depends=[BSgenome]; }; BSgenome_Mfuro_UCSC_musFur1 = derive2 { name="BSgenome.Mfuro.UCSC.musFur1"; version="1.4.1"; sha256="0c0569a1k36sk0vzf7afhnfm0n2nwcdp3dc88s1hghpg7lwi9g9j"; depends=[BSgenome]; }; + BSgenome_Mmulatta_UCSC_rheMac10 = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac10"; version="1.4.2"; sha256="06ja5fn3sgk2lmfwf7m5sqcz0dq732v8y4vhc2cnbbvhpyax0mbd"; depends=[BSgenome]; }; BSgenome_Mmulatta_UCSC_rheMac2 = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac2"; version="1.4.0"; sha256="15vswd1fq7a7g1dkm0wzkmclih8z373nfzjyc3zrn9l0nawdv9jj"; depends=[BSgenome]; }; BSgenome_Mmulatta_UCSC_rheMac2_masked = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac2.masked"; version="1.3.99"; sha256="1j4z4iy13n4qbi9a50qw1hn8z14xz0z8hbiwhy2bb9znykkf4chd"; depends=[BSgenome BSgenome_Mmulatta_UCSC_rheMac2]; }; BSgenome_Mmulatta_UCSC_rheMac3 = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac3"; version="1.4.0"; sha256="0r3v4p567rxcczwqi7zdz7pmdiffgrq83j488libdb4s0hdg5jmi"; depends=[BSgenome]; }; @@ -99,8 +106,9 @@ in with self; { BSgenome_Vvinifera_URGI_IGGP12Xv0 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv0"; version="0.1"; sha256="1m8mqkiqs7291hccb8pfyf2yxpky45qr6j3d9wkvp9x3ra3h0yxf"; depends=[BSgenome]; }; BSgenome_Vvinifera_URGI_IGGP12Xv2 = derive2 { name="BSgenome.Vvinifera.URGI.IGGP12Xv2"; version="0.1"; sha256="1saavsi75gw33jphhm3qb5psyfrv850ss4cmqr4i7aw1kc0fvs1j"; depends=[BSgenome]; }; BSgenome_Vvinifera_URGI_IGGP8X = derive2 { name="BSgenome.Vvinifera.URGI.IGGP8X"; version="0.1"; sha256="0v0hi2pbbi5ynd92bvbv4bzr7bgv48kvyz62hdv7k9gh7s5pg0id"; depends=[BSgenome]; }; - ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.0"; sha256="0h4jxcb6vkf9ijljas7yvcx6vmrd5rpjgj202cf2jb9hx8h9497i"; depends=[BiocGenerics ChemmineR RSQLite]; }; + ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.2"; sha256="0l47ac6lkycmghra2cbcdcxcv47ari8xg6lxpzilvkf4n6ld6064"; depends=[BiocGenerics ChemmineR RSQLite]; }; DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; }; + ENCODExplorerData = derive2 { name="ENCODExplorerData"; version="0.99.5"; sha256="00gfm5l8pxrfs4cw4jlw6n0cz5s31isg69k833n89800v26w3kvh"; depends=[data_table jsonlite RCurl]; }; EnsDb_Hsapiens_v75 = derive2 { name="EnsDb.Hsapiens.v75"; version="2.99.0"; sha256="0jx6rf6v0j8yr07q3c1h7s121901dc400nm6xaiv4i7kb5czjn9c"; depends=[ensembldb]; }; EnsDb_Hsapiens_v79 = derive2 { name="EnsDb.Hsapiens.v79"; version="2.99.0"; sha256="0k94iml0417m3k086d0bzd83fndyb2kn7pimsfzcdmafgy6sxwgg"; depends=[ensembldb]; }; EnsDb_Hsapiens_v86 = derive2 { name="EnsDb.Hsapiens.v86"; version="2.99.0"; sha256="1gp7xrzddpvmh2vrcp571wyy00skxgxfl39ksj4h0hm1qay0fb2m"; depends=[ensembldb]; }; @@ -108,7 +116,10 @@ in with self; { EnsDb_Mmusculus_v79 = derive2 { name="EnsDb.Mmusculus.v79"; version="2.99.0"; sha256="1zpmq7v55if6q9r0h883q9k8l70ym20b01m9hxf121wb256rl9f7"; depends=[ensembldb]; }; EnsDb_Rnorvegicus_v75 = derive2 { name="EnsDb.Rnorvegicus.v75"; version="2.99.0"; sha256="02sx9l1p67ihkn0dfzbi08cpp8x4k2mjdqn7hvzfiaibsbqp70bb"; depends=[ensembldb]; }; EnsDb_Rnorvegicus_v79 = derive2 { name="EnsDb.Rnorvegicus.v79"; version="2.99.0"; sha256="1ki2hrn0a55f3ipxny0hpgl5ld9pjkhcwmvvqwwd99f3sqbxf3br"; depends=[ensembldb]; }; - EuPathDB = derive2 { name="EuPathDB"; version="1.0.0"; sha256="08yl7zx5j6ywnrdcrrsvfkkxnvhrhrcddxw0g5sv90gy55zgv86n"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDbData GenomicRanges]; }; + EpiTxDb_Hs_hg38 = derive2 { name="EpiTxDb.Hs.hg38"; version="0.99.3"; sha256="0hy1kjl2apzxpmg4a6yyg8c2j5ljphmjlm1in9b8g0ny1fjw4nci"; depends=[AnnotationHub EpiTxDb]; }; + EpiTxDb_Mm_mm10 = derive2 { name="EpiTxDb.Mm.mm10"; version="0.99.4"; sha256="0n0g2spy89fz1632vj9lj0b072rjbixcxnfwgf6sdzp12lhsc60z"; depends=[AnnotationHub EpiTxDb]; }; + EpiTxDb_Sc_sacCer3 = derive2 { name="EpiTxDb.Sc.sacCer3"; version="0.99.3"; sha256="0fdyzxfkdi9x2hbpw1q5g0wm8qwzgbzqdqh2nampdisrbfr73amm"; depends=[AnnotationHub EpiTxDb]; }; + EuPathDB = derive2 { name="EuPathDB"; version="1.0.1"; sha256="0k23f34hnvcf2ig9sic7gf7pypc2jmwymg605qym7x32bjhi6rlm"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDbData GenomicRanges]; }; FDb_FANTOM4_promoters_hg19 = derive2 { name="FDb.FANTOM4.promoters.hg19"; version="1.0.0"; sha256="04sn5x1r5fcbghzw6n1bvy0z8zyhrbk86wsqz1p5gk665vicz8rw"; depends=[AnnotationDbi Biostrings GenomicFeatures]; }; FDb_InfiniumMethylation_hg18 = derive2 { name="FDb.InfiniumMethylation.hg18"; version="2.2.0"; sha256="0vwzqzj49imjdsn8ssiwqi7qic7rqw5pbsiinyxgy7y10fn2i42a"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg18_knownGene]; }; FDb_InfiniumMethylation_hg19 = derive2 { name="FDb.InfiniumMethylation.hg19"; version="2.2.0"; sha256="0gq90fvph6kgrpjb89nvzq6hl1k24swn19rgjh5g98l86mja6nk0"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg19_knownGene]; }; @@ -116,8 +127,9 @@ in with self; { FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; }; FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; }; GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; }; - GO_db = derive2 { name="GO.db"; version="3.7.0"; sha256="0i3wcf5h3n0dawzc1hy0kv74f06j80c47n4p3g3fmrcxlhi3jpa5"; depends=[AnnotationDbi]; }; - GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.0"; sha256="0di6nlqpsyqf693k2na65ayqldih563x3zfrczpqc5q2hl5kg35c"; depends=[]; }; + GO_db = derive2 { name="GO.db"; version="3.11.4"; sha256="1sfrjgf013cwsll85p1q1idc2r6qjx2shsxgv33d9mw5kai4di2k"; depends=[AnnotationDbi]; }; + GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.3"; sha256="1swaqygs0hpgrxcggwjhz9y5j9yqxb85pncsr17r3rrcaky7jpcl"; depends=[]; }; + GenomicState = derive2 { name="GenomicState"; version="0.99.9"; sha256="0qpa77bsycm3y82jrxq7r27gsygb1qbhkakz3cln3jv3sfkf0aj7"; depends=[AnnotationDbi AnnotationHub bumphunter derfinder GenomeInfoDb GenomicFeatures IRanges org_Hs_eg_db rtracklayer]; }; Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; }; Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.3"; sha256="034aady3hy8j9bm7pbl8l8h0gcfnzmpyxg9l9s1ky0pj7ryzr93a"; depends=[AnnotationDbi org_Hs_eg_db]; }; HsAgilentDesign026652_db = derive2 { name="HsAgilentDesign026652.db"; version="3.2.3"; sha256="0x6nxvzmc8k4qp382ca32y58awkxpg0b3kc7m1mz9iag6sq7c5vx"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -137,118 +149,117 @@ in with self; { IlluminaHumanMethylationEPICanno_ilm10b4_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b4.hg19"; version="0.6.0"; sha256="0687b4k8hwfc18qgdd9ypv1skp37jd204fszba0gmrv3dc92i09c"; depends=[minfi]; }; IlluminaHumanMethylationEPICmanifest = derive2 { name="IlluminaHumanMethylationEPICmanifest"; version="0.3.0"; sha256="0alhjda5g186z8b1nsmnpfswrlj7prdz8mkwx60wkkl6hkcnk6p3"; depends=[minfi]; }; JASPAR2018 = derive2 { name="JASPAR2018"; version="1.1.1"; sha256="1iq5b51ryah2ccdx16yyigfa2jiapcpm94l6vgvd4v7b94jjp8l7"; depends=[]; }; + JASPAR2020 = derive2 { name="JASPAR2020"; version="0.99.10"; sha256="0nrp63z7q2ivv5h87f7inpp2qll2dfgj4227l4rbnzii38a2vfdr"; depends=[]; }; JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.3"; sha256="04lvcmm4ybxkfwgbiwcnpyj6kpbd0gd7jz6ijlbbvv6zdgdmvykb"; depends=[AnnotationDbi org_Hs_eg_db]; }; - KEGG_db = derive2 { name="KEGG.db"; version="3.2.3"; sha256="0qv9in1nmnqcbjxh0y45x33xyw9zdp4jf5hmlvcsh1pclcq4dsh2"; depends=[AnnotationDbi]; }; + KEGG_db = derive2 { name="KEGG.db"; version="3.2.4"; sha256="125dksxg6jx0mh6zfl0icnjca1j7j0i3ml8fq0f4klfbcjvd2q1f"; depends=[AnnotationDbi]; }; LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.3"; sha256="0960gy5p4ybs5zs6251cgc3nk5a9gsh1nh23gkbkr3gc8jddinfm"; depends=[AnnotationDbi org_Hs_eg_db]; }; - LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="0.99.1"; sha256="0v7zyp6mngdfrqgx0fb6lj0ara7q4ch2dahnwqjk5y9psmvi8m16"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Bta_eg_db = derive2 { name="LRBase.Bta.eg.db"; version="0.99.1"; sha256="14yl5d4vmm2hjrlxsflwvkw18j0kcz364b3mc3fnxzbk8phisy3l"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Cel_eg_db = derive2 { name="LRBase.Cel.eg.db"; version="0.99.1"; sha256="18w8ay874qjs4qgb3g1j77k2fspvvvbyy3p85wgzy1yl839ngy3b"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Dme_eg_db = derive2 { name="LRBase.Dme.eg.db"; version="0.99.1"; sha256="0qbc5942g57mjdlhqpnapwq58bmi5xbc0mrqbqkfbxpx881ka2v6"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Dre_eg_db = derive2 { name="LRBase.Dre.eg.db"; version="0.99.1"; sha256="0wpx9dg2nhw20f3vvmaqy5yip8xwg1niswspxs4jv9krd0z6h5d8"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Gga_eg_db = derive2 { name="LRBase.Gga.eg.db"; version="0.99.1"; sha256="0nycj3h69ca2gxxmc08zvf0jv5zylfayhd6sgzrmqz0zsr0n5fxk"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Hsa_eg_db = derive2 { name="LRBase.Hsa.eg.db"; version="0.99.1"; sha256="0g690d63sp5pb0i28zvi80y41n6b31mzza46invjvq9c1j2rijzd"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Mmu_eg_db = derive2 { name="LRBase.Mmu.eg.db"; version="0.99.1"; sha256="0kmd69a31hw8i2p8qg64m074ypa102cfa7qpyz2m7nr6gwb3ik3z"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Pab_eg_db = derive2 { name="LRBase.Pab.eg.db"; version="0.99.1"; sha256="0scycwpdmr6yvfyqsani1372pmyqxzvv30wsvy8hx3km7dcd4ypz"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Rno_eg_db = derive2 { name="LRBase.Rno.eg.db"; version="0.99.1"; sha256="1b5rzb9kpnak90fb55y380qmspd8gah3wxvsliv1lddab65m5ch3"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Ssc_eg_db = derive2 { name="LRBase.Ssc.eg.db"; version="0.99.1"; sha256="1p1crrh3wkinvhqmy9b1h4j9yfvwbsykhm6b0xlhn0kzdqxlizjf"; depends=[LRBaseDbi RSQLite]; }; - LRBase_Xtr_eg_db = derive2 { name="LRBase.Xtr.eg.db"; version="0.99.1"; sha256="0aqzcll2ylzbbq42ns0hp7l9p6343l2qlsv5zkglla1bxdxl6m4h"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="1.2.0"; sha256="1y2dgmqhv0x4ydvxq6dcg5m0gzcvlzb9jq4hs3axdyy8d62i8flh"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Bta_eg_db = derive2 { name="LRBase.Bta.eg.db"; version="1.2.0"; sha256="04z4fmfyl1k6m3paab6ip9h015q90xpxxn5lccm03k3pcv7wf5mh"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Cel_eg_db = derive2 { name="LRBase.Cel.eg.db"; version="1.2.0"; sha256="1kdcm469qkvncw92c5wjlgnfc9fnqpn15nc124zv0ykpx34fd922"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Dme_eg_db = derive2 { name="LRBase.Dme.eg.db"; version="1.2.0"; sha256="1amsik0g0pl72jfi8v9jnqpfs8rdsrq1ybly79lyhq1rpdjicayk"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Dre_eg_db = derive2 { name="LRBase.Dre.eg.db"; version="1.2.0"; sha256="16c0fcw6y4nqgvwzx3v8h822dbw3cbmb8h4sd7g9zwmylibbl35g"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Gga_eg_db = derive2 { name="LRBase.Gga.eg.db"; version="1.2.0"; sha256="1rdamsg3gikh22sfkafacl0b8507z5hk28j1vcaxdscrwwyrc6bz"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Hsa_eg_db = derive2 { name="LRBase.Hsa.eg.db"; version="1.2.0"; sha256="1qdyh4i016i40zn72h1x7194x1wi8pddl6cyln658k334p60x86l"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Mmu_eg_db = derive2 { name="LRBase.Mmu.eg.db"; version="1.2.0"; sha256="1viw7vhy3m7b7fwkm38y7f26bzywl1n2i1cff7mp91czss26bq9s"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Pab_eg_db = derive2 { name="LRBase.Pab.eg.db"; version="1.2.0"; sha256="1s5i4167ygwq35j60ns4f1yf6llasxx6wad61xng5p8lgq3186nr"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Rno_eg_db = derive2 { name="LRBase.Rno.eg.db"; version="1.2.0"; sha256="08xnr1wlg3lkjdmjdvy2i12ki3ym7z4gr3zvyj2ghkyn0gyd73gp"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Ssc_eg_db = derive2 { name="LRBase.Ssc.eg.db"; version="1.2.0"; sha256="0hqns1c4xgay7aagbhl46b9zwf5hp1p33jf9f28l5mxvvc96zrbn"; depends=[LRBaseDbi RSQLite]; }; + LRBase_Xtr_eg_db = derive2 { name="LRBase.Xtr.eg.db"; version="1.2.0"; sha256="0kl6f7a1fxxrchz8s5dsh2vqsa8ckigi4clpnr76qvhlcfn77hk7"; depends=[LRBaseDbi RSQLite]; }; LowMACAAnnotation = derive2 { name="LowMACAAnnotation"; version="0.99.3"; sha256="0ri301ci54s8wwkah1jccy5h44xg8yjk08j5b15qmdsm25hli4wm"; depends=[]; }; LymphoSeqDB = derive2 { name="LymphoSeqDB"; version="0.99.2"; sha256="1cdyn2imjh4zr23szndc4vwyiacxs1jsp14gil2dyq9aifa25qr7"; depends=[]; }; - MafDb_1Kgenomes_phase1_GRCh38 = derive2 { name="MafDb.1Kgenomes.phase1.GRCh38"; version="3.7.0"; sha256="160whyhwjspqji6ys19qgi4y3k7z1qqzr75nhpw0yl8h1rc6rfg0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_1Kgenomes_phase1_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase1.hs37d5"; version="3.7.1"; sha256="1yxhb3kysgj95wdp7v5kq3bvn9xj09ywkfm2fdrkqxmzpan7q9q5"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_1Kgenomes_phase3_GRCh38 = derive2 { name="MafDb.1Kgenomes.phase3.GRCh38"; version="3.7.0"; sha256="0z0v2kld7xqk2plrwb594q3al2kxi64k5phyknnpb0hhgddl688z"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_1Kgenomes_phase3_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase3.hs37d5"; version="3.7.0"; sha256="0rg4vzk3ik2ikdr57fp1za37kfpci6ha0qn8wpnyf8qyc3h9q5xf"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_ESP6500SI_V2_SSA137_GRCh38 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.GRCh38"; version="3.7.0"; sha256="1iybhk64lqar1b8qv1rjxzf53mci9bq684m4l7zqrz8g91jx7myq"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_ESP6500SI_V2_SSA137_hs37d5 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.hs37d5"; version="3.7.0"; sha256="1nfcnlwcx1sr2z4icg893zv3j9c9gnhd0nbgnjrl1fh2nrl25wsd"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_ExAC_r1_0_GRCh38 = derive2 { name="MafDb.ExAC.r1.0.GRCh38"; version="3.7.0"; sha256="1xs52xivxjzg14d0fr3ifb29shysxvw062c3wzb1nfmnydixcqmf"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_ExAC_r1_0_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.hs37d5"; version="3.7.0"; sha256="00b022hzwr0l6m9wzw76iirdq5szvi5z8a9yi2i44sydhwqsb4cy"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_ExAC_r1_0_nonTCGA_GRCh38 = derive2 { name="MafDb.ExAC.r1.0.nonTCGA.GRCh38"; version="3.7.0"; sha256="1dvzzwj9dhrls8caabdcgddsk64a6q9jqcya424h8n48fkx6fpjn"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_ExAC_r1_0_nonTCGA_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.nonTCGA.hs37d5"; version="3.7.0"; sha256="10rn7nqrnhmhdqcygi8l3cwf1385jyy56qzqjgqyhvmi4g8dnjsn"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_TOPMed_freeze5_hg19 = derive2 { name="MafDb.TOPMed.freeze5.hg19"; version="3.7.1"; sha256="0a8rgh3lkbplg3y1yl0804f55dlw7v8lcb33ygg8kg39dk60m102"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_TOPMed_freeze5_hg38 = derive2 { name="MafDb.TOPMed.freeze5.hg38"; version="3.7.1"; sha256="1kxk3qqw1igkygqmj8yjl4cp99fan1w84gilh6q35nsaja0fapa8"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_gnomAD_r2_0_1_GRCh38 = derive2 { name="MafDb.gnomAD.r2.0.1.GRCh38"; version="3.7.0"; sha256="0dp82x6dag4ndizvppr2g5x1v8sbj08r6n7mi98c89fn4f7nvqqw"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_gnomAD_r2_0_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.0.1.hs37d5"; version="3.8.0"; sha256="0kb50g4kmj1b4xm9p8q6j1yzpv5ygxf71vqhkb7c0ajqffqbyznm"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_gnomAD_r2_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.1.hs37d5"; version="3.8.0"; sha256="00ld23685xlrkx9rpgrcqaycq3zxbxqg734r99avrw8p3lmj4fvc"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_gnomADex_r2_0_1_GRCh38 = derive2 { name="MafDb.gnomADex.r2.0.1.GRCh38"; version="3.7.0"; sha256="0hwyyqa4g3hp85hk4b6qfzm10yk6h20sh0f2mf09yr0hpmkjyl59"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_gnomADex_r2_0_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.0.1.hs37d5"; version="3.8.0"; sha256="0xz6ayip0cdbal6gsc8wpjyg3rr1kadaddv8flw5k8ky84mckzbc"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafDb_gnomADex_r2_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.1.hs37d5"; version="3.8.0"; sha256="06vicw9z05j1pw30sw0f2nkcixc14yn3anq0g3317i3rb1kvmwid"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.11.0"; sha256="02ysykmbn1b6rv3fbq71g9lnv16gvxyvb9p9smvm0k9brb7s0q24"; depends=[MeSHDbi]; }; - MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.11.0"; sha256="13x69ki5g99hravrfdll98z2n7nghvf02v920q4g2bgjzzh68sks"; depends=[MeSHDbi]; }; - MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.11.0"; sha256="1sffv89v1vrlgy36kf7q7ixnc2iwfaa2h0dsxrg0pjmzsq669h9s"; depends=[MeSHDbi]; }; - MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.11.0"; sha256="0ssivaq31rjagw5sdjg9ai3bm73mdvdrkqz0snf3phdgxpvldqms"; depends=[MeSHDbi]; }; - MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.11.0"; sha256="0cl95vipqcjf1pb9bjzvxa4dc0d5rzac84n9f6l061vhifa2c3pn"; depends=[MeSHDbi]; }; - MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.11.0"; sha256="190h3pch16bzx0h674kwywcy3pr1y16jbzczbmmvsxg1l2j549zm"; depends=[MeSHDbi]; }; - MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.11.0"; sha256="0w6gq9xy1v84ksbd849jpj073s51fbhgss8wl6ax4ybxvfp22m0s"; depends=[MeSHDbi]; }; - MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.11.0"; sha256="0jdxvnhxrajhd5dr6hzfii7b1n6x874qfc8999pw8y8rwh8c4ln7"; depends=[MeSHDbi]; }; - MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.11.0"; sha256="0vqyanf9n9ji77zkck3vyrrhm87hx3yxiy9fpwal6a0vh31vrjb9"; depends=[MeSHDbi]; }; - MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.11.0"; sha256="11f9jibxf0amhixhs2pvmx6ir1530qkm9xcjrj09hwyx687bs3z8"; depends=[MeSHDbi]; }; - MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.11.0"; sha256="03nbmbnbfvpja1p9rnqy1mpamlab0fd2y4fkx456jmnl87m1zk0n"; depends=[MeSHDbi]; }; - MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.11.0"; sha256="0pd9gigwrckz9drh3x7n9nvvcq2q2wwmczkhhkqlpp4qhg85yp7g"; depends=[MeSHDbi]; }; - MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.11.0"; sha256="1rjb9ldrn2jg73p2j9mjn61ljw83bhr07yq7482lp4mglhwvqibm"; depends=[MeSHDbi]; }; - MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.11.0"; sha256="14ywqllqgynwfxyxrkw2d6r7m2n82znx9s15l62d7jb88pvaajn6"; depends=[MeSHDbi]; }; - MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.11.0"; sha256="0b5b5dyh99gykdp3whdz7rjz1862p3w4jigy7s1bjmhv4pm3bn2d"; depends=[MeSHDbi]; }; - MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.11.0"; sha256="1cbwqyb4ja10j0250lggbpxgpivf0xj1m7hn4l687rdidxgrmy4s"; depends=[MeSHDbi]; }; - MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.11.0"; sha256="0b5q8yclcx18f8aq45ikv7qyw0xfsksjf1fbl6fprflvzfz2cnir"; depends=[MeSHDbi]; }; - MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.11.0"; sha256="1rd90rzipaa480sahh7pqlv1qzj1wcx543gkshj6mcfkr6r08zci"; depends=[MeSHDbi]; }; - MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.11.0"; sha256="0xg2mi60qlg76g1zxmybcixci8nivw4ld91qxf13jybcr0mwf9xn"; depends=[MeSHDbi]; }; - MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.11.0"; sha256="0l80s6v7p2n7p17chbk6a7y5y2b02z38x034jwg3yvyfqy073r11"; depends=[MeSHDbi]; }; - MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.11.0"; sha256="187zq75qz7jysz8jg5k5sgvxkrpvdyyi8xlsidi774nyb7z5d96l"; depends=[MeSHDbi]; }; - MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.11.0"; sha256="1aicyzgw5nx6z9q339cd1iabi7a1yjswla0j94anqwh783lqrpxq"; depends=[MeSHDbi]; }; - MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.11.0"; sha256="03rvcxawyhckg693w2ngnk3sljgz7idha6iqyax8p8wagl2h5ipv"; depends=[MeSHDbi]; }; - MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.11.0"; sha256="17d3ankadjsvddfqxqm3hnqcmsr2rknkbvraq6zpdl7xw3r21yfn"; depends=[MeSHDbi]; }; - MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.11.0"; sha256="1j3wsmspg7w30y04l173pihac9xg633w8zj2scz6jnph6rgxw3p1"; depends=[MeSHDbi]; }; - MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.11.0"; sha256="0640jfik9qp15h5180rn1afd2kv2wh5s0nbv2zjiz6089csb2fnf"; depends=[MeSHDbi]; }; - MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.11.0"; sha256="1y058sma4p48fj5f8v2i79nak5892pkk7rmr3i18jv44c8246zzl"; depends=[MeSHDbi]; }; - MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.11.0"; sha256="03dybrs5zhnil83jp37hq4rh8ybvyjnqpkr2vwa7f1kd65mq33za"; depends=[MeSHDbi]; }; - MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.11.0"; sha256="032kjhsm39jck9gxlg15g4x6n4r2iyi339vm6b9v4xcays45h9hi"; depends=[MeSHDbi]; }; - MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.11.0"; sha256="0h60gqkc4cjkbqs8i3x6z774qq4ihp20bssi70wli6fvsiysgbly"; depends=[MeSHDbi]; }; - MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.11.0"; sha256="1c8rg4h6gcs4y5gxz1z66a0ma3xpg4sdp6zwzcyrq02r2vjwj6ls"; depends=[MeSHDbi]; }; - MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.11.0"; sha256="03aycm5222wkx6rh7x204rkcxnh6amghm2zpzqiy4c5a2a871y9d"; depends=[MeSHDbi]; }; - MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.11.0"; sha256="0qqwwa3hk8ds2nv7xndqx4z9s00524sqrpgxh690yhdczn1ridqd"; depends=[MeSHDbi]; }; - MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.11.0"; sha256="1v47a80lvhhbl7sqx881nx1m4pqi6mprmgd03cvk4vhrgv74ji8f"; depends=[MeSHDbi]; }; - MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.11.0"; sha256="0mpabfvji1y1irgm5wkbinabriwbbb6wg6a0rc4mq5vn6j8nia36"; depends=[MeSHDbi]; }; - MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.11.0"; sha256="1sb0b82ibvk2n22a88c7qkmb3wch6zcgaah54p920dih2xxx24nb"; depends=[MeSHDbi]; }; - MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.11.0"; sha256="1i65691h3w34kvqswfkg6klpj8gm39p6csa8da4hlbwc7q58zzpf"; depends=[MeSHDbi]; }; - MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.11.0"; sha256="12yrsy71g0r6w028i56kxknkb4gr34x4d6064m61023234j31j69"; depends=[MeSHDbi]; }; - MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.11.0"; sha256="19ihdqwlrifd6nyi1bbxnjbq7qqb535d47mm5h0f1pz2h6w6jps6"; depends=[MeSHDbi]; }; - MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.11.0"; sha256="1f2f9vqdaqi6iak6yg3rcgcpvhaz76zl4hywnlz1gi7aszxiff0k"; depends=[MeSHDbi]; }; - MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.11.0"; sha256="075hhjahc34bznvmqrlc6vnlq25c4ybsyd6ry5qmnzccpxyqhgv8"; depends=[MeSHDbi]; }; - MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.11.0"; sha256="0c7kb73jrr74a05jgyf903bvy92pn23aklflnl2cqqwxqjc6f9hm"; depends=[MeSHDbi]; }; - MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.11.0"; sha256="1zg7c08z6j02sg74ff1q3hnmy5bszd6g5dyr0hxxqivx28bmirya"; depends=[MeSHDbi]; }; - MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.11.0"; sha256="1p70v5bvhawsh954mmnxiy734n0z6b0mfl4j3i2g3jijwrds9f6v"; depends=[MeSHDbi]; }; - MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.11.0"; sha256="0997k7iwq49sf2fn88lgx5j3rhsv9g7mldsm2bpsqmw52d8j568f"; depends=[MeSHDbi]; }; - MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.11.0"; sha256="16pxwy7yycdp59j3nvz58jc8h2y251b4prpk4nn589z7pk37hw52"; depends=[MeSHDbi]; }; - MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.11.0"; sha256="0dmdfi983i2sf56b06p7q1w7n8ik3j1dkfw1x1cc207wmmns4916"; depends=[MeSHDbi]; }; - MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.11.0"; sha256="024076n31mpz2fr7dbf5di6gxn1w1gajx95065vl4555zx46i9n1"; depends=[MeSHDbi]; }; - MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.11.0"; sha256="0rbnysb12i2f1a9xz0869m5n031j60c8bxnj1cp0zxlnylamf7w0"; depends=[MeSHDbi]; }; - MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.11.0"; sha256="1h9jz00bgz54nknl95jf60qqgmn5iyq766sdkxn7r54h9315c9g9"; depends=[MeSHDbi]; }; - MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.11.0"; sha256="1b4nhix3ky4d0cm8hix9m7chcgdyskvd0h7fj3k13a4zxyxvfw9x"; depends=[MeSHDbi]; }; - MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.11.0"; sha256="16fcswjrv056g5d6ikf2g8af470djf02pyxhp5ib6gk932vl7kp0"; depends=[MeSHDbi]; }; - MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.11.0"; sha256="08cdkyvwss0cczd6j19j02950jpqhhzi79y9swqnzzh3nydb3aqj"; depends=[MeSHDbi]; }; - MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.11.0"; sha256="09nigd6hc3iy3s2r70ixfyj04la8cnaxhvr5i1k0adapjgf4q1mx"; depends=[MeSHDbi]; }; - MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.11.0"; sha256="1cwhbrpiznkfbkxchpddkr68jzcxzn0mvn8cy81dm0vj4x8dxjb8"; depends=[MeSHDbi]; }; - MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.11.0"; sha256="0psaqhdi4hicy5vkngkh7ig5ndsjl768n9fg36zlvqllww58kfis"; depends=[MeSHDbi]; }; - MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.11.0"; sha256="0jdwxkwinbnvap0mpirzcd4zgfvhsmca2r57s2lzh2i1x24hxa4c"; depends=[MeSHDbi]; }; - MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.11.0"; sha256="16qcm0d8m53dkwfbcsygbm3xj7x6hblwpa4agds5vnlkb26m48qn"; depends=[MeSHDbi]; }; - MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.11.0"; sha256="1w3zqynqjv79ixxnmn3khvj3p6586nq48dx00rap6vzirmhzigqv"; depends=[MeSHDbi]; }; - MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.11.0"; sha256="0ryxhk5g07fpnnk72q5a2847k6w509956fcxnrvwvp7f98p3z50x"; depends=[MeSHDbi]; }; - MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.11.0"; sha256="0i1772rpq95ppzxa809ms1r65d9rk5vqhcl36ndjs2lhzdydw8fz"; depends=[MeSHDbi]; }; - MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.11.0"; sha256="0xgi89vzhxkmqx0y84i58jkxikksqdi64r82p59ir6l1anpyvvc9"; depends=[MeSHDbi]; }; - MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.11.0"; sha256="0g0fnackq1yjaw0b3ppzbcj0sfx288wm6cv57ly69svfg1n0wlk5"; depends=[MeSHDbi]; }; - MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.11.0"; sha256="1z29d19is5lq8rqrkk1dyifgn0v2i68pbw8i7dlwnnicj2sfpynb"; depends=[MeSHDbi]; }; - MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.11.0"; sha256="0dcxjlpc9diz1lvrkpbrab5zjz96r837x7ij9786966a3x458xk0"; depends=[MeSHDbi]; }; - MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.11.0"; sha256="0gpj4i2mls1qkyivxy2gk3b8w9vkxnwf2b0cpmbv5bvpjcsbw47i"; depends=[MeSHDbi]; }; - MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.11.0"; sha256="14knm1h8mp5qfjbny2wwkj772x72laxgymhsa04m78mb38qhypwq"; depends=[MeSHDbi]; }; - MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.11.0"; sha256="0hwgkq669g99yrkbpk3pjpxbz7q0vwvkcx3rrvdk9dnjinlbcn54"; depends=[MeSHDbi]; }; - MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.11.0"; sha256="1mz986apgfd6sn62wws948yi46r87fzaszxnv450fgc42l23l0jx"; depends=[MeSHDbi]; }; - MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.11.0"; sha256="0dvz5xbx6vdmqibpq8xmpdjfvvqw7iqq3w4d350sxj5kaw2afp5s"; depends=[MeSHDbi]; }; - MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.11.0"; sha256="08hyvaqsvdpcizsqr53ab6bfh1fnlsj8d62pq03lpgr96rlyqi8q"; depends=[MeSHDbi]; }; - MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.11.0"; sha256="0mid3qmv7kxc7kn69vbhgchvrbv4fig97nw9zxsbd0rj66abzas2"; depends=[MeSHDbi]; }; - MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.11.0"; sha256="1pwq58mm7ripnzxcn13k1y157pjasrv30xxmrrqb4rv55nk61vbf"; depends=[MeSHDbi]; }; - MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.11.0"; sha256="0qd75lkyrs864sy3sci3bablipn9gabk24wbriis9bi0qf7hccv5"; depends=[MeSHDbi]; }; - MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.11.0"; sha256="0djsx876h0xz0h8jhs6yad8iqqjlr72b0fxasqgh89zpfp2hkvwd"; depends=[MeSHDbi]; }; - MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.11.0"; sha256="08b92lhq2gbvbm7y0q4zc991wi1fjhm68n03b782h2g6syczmlma"; depends=[MeSHDbi]; }; - MeSH_db = derive2 { name="MeSH.db"; version="1.11.0"; sha256="1l6hynwmhb8p666q8n9dnvd0nhjy1f9nz2jg3z2p13dc5jl6syiw"; depends=[MeSHDbi]; }; + MafDb_1Kgenomes_phase1_GRCh38 = derive2 { name="MafDb.1Kgenomes.phase1.GRCh38"; version="3.10.0"; sha256="057531mvxip32lyqak4hh964ms0cil29p5cch5fpjw5vbbzidrlc"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_1Kgenomes_phase1_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase1.hs37d5"; version="3.10.0"; sha256="0vsjik59qa36w402bcrd5z27wc9vyp4gl0ffcwskd9iwjqim0phi"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_1Kgenomes_phase3_GRCh38 = derive2 { name="MafDb.1Kgenomes.phase3.GRCh38"; version="3.10.0"; sha256="0ibww7ml5cfyx8h198fgrnf13vvsxxb5spf7hcmm6z3hha6j2ij0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_1Kgenomes_phase3_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase3.hs37d5"; version="3.10.0"; sha256="1c2bxgy3bpbszfsqlk262lv45x1fgqyywk9i9nax7bpahlcpp68d"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_ExAC_r1_0_GRCh38 = derive2 { name="MafDb.ExAC.r1.0.GRCh38"; version="3.10.0"; sha256="02mlwkx9kal4h1q1h3c2pdragir9bh63vg1wyagmh8capf19zx5c"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_ExAC_r1_0_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.hs37d5"; version="3.10.0"; sha256="18czbllphsccb2hs02g6jz517ylxsvx12czwh4xz7vym6q4br0cz"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_ExAC_r1_0_nonTCGA_GRCh38 = derive2 { name="MafDb.ExAC.r1.0.nonTCGA.GRCh38"; version="3.10.0"; sha256="16rsm24nlz7jdnqk1p0avn9dlxkbbjd50nja5pcg0z18m30srlya"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_ExAC_r1_0_nonTCGA_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.nonTCGA.hs37d5"; version="3.10.0"; sha256="1srwc9n9x0ilipqwvm95khy4w2dnn1fkxyrrlcqfwv96gl7141x5"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_TOPMed_freeze5_hg19 = derive2 { name="MafDb.TOPMed.freeze5.hg19"; version="3.10.0"; sha256="1fxq5jq4g6rys909v0a4lbrcgfdk844wgihn0ary509w8ifdkxdv"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_TOPMed_freeze5_hg38 = derive2 { name="MafDb.TOPMed.freeze5.hg38"; version="3.10.0"; sha256="0yd9r26l2s3ykw5d2lndnx4m1h401g7hsnkk0wywczdc1xa39y4n"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_gnomAD_r2_1_GRCh38 = derive2 { name="MafDb.gnomAD.r2.1.GRCh38"; version="3.10.0"; sha256="1bshq6ncns7xdrpkkc84m4x6a1pnm3ssp02f0d23yhlkhh0h40zd"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_gnomAD_r2_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.1.hs37d5"; version="3.10.0"; sha256="153dy3lx0islfdkmyik7lxp1w2yzb0bqmia673hlwi4rmvns112h"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_gnomAD_r3_0_GRCh38 = derive2 { name="MafDb.gnomAD.r3.0.GRCh38"; version="3.11.0"; sha256="1zsgaxjapw78x2mdbcf31g840pdnbibyjzxd26mgnpv5nyrjbhwz"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_gnomADex_r2_1_GRCh38 = derive2 { name="MafDb.gnomADex.r2.1.GRCh38"; version="3.10.0"; sha256="1v0sdjmn9z8gqn4yj4v04zycj3ngr32r04zqmkp6y41hcgdr8lxw"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafDb_gnomADex_r2_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.1.hs37d5"; version="3.10.0"; sha256="0y42ncmilijdxsgqsmskz7gff3il3fdf2kpflknmz1z9kybzaday"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + MafH5_gnomAD_r3_0_GRCh38 = derive2 { name="MafH5.gnomAD.r3.0.GRCh38"; version="3.11.0"; sha256="1m793ri39gjm41yfq3yglg7dxyqd2ss0i0vvivqxigff63iz8awh"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; }; + MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.13.0"; sha256="0l55b03072s052ji52glqpqc8x0z7d4fkf392113bskmplgcg3ny"; depends=[MeSHDbi]; }; + MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.13.0"; sha256="061bp9y592h57y0i4y6aah9vln23f1mk1yzx9fxhimnd4rzmwzl4"; depends=[MeSHDbi]; }; + MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.13.0"; sha256="10253yy1gv96x6h92xz35qhz087ma6whr5pbi69mjdfc21pzyc7a"; depends=[MeSHDbi]; }; + MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.13.0"; sha256="19aw7vq6iafhjb1n7kgbyaib2di682dia0yjc4r3cnzv7k7kv8z0"; depends=[MeSHDbi]; }; + MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.13.0"; sha256="0ljijw7p5nxvgda2jb3gf6x03y046ihxz7nl2s90rgf4s1fjciaf"; depends=[MeSHDbi]; }; + MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.13.0"; sha256="1afv8yf2yggid12id0j5v5gf5qhcdmanfanp2d13cnkzgxkr88js"; depends=[MeSHDbi]; }; + MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.13.0"; sha256="1amgb9gr5aa1cgggf2x5ailzm4mfq78lfqnx1yzq1ix3nh5idajf"; depends=[MeSHDbi]; }; + MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.13.0"; sha256="0byxvlwcix154qbpvpgv9zblyn1wx6npn366303v81r6x5gh4qkh"; depends=[MeSHDbi]; }; + MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.13.0"; sha256="1v1f7b0qyii8nakn7lhckbyqyw43101i2y0dcamp5lds8m79691d"; depends=[MeSHDbi]; }; + MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.13.0"; sha256="1rr4yr0n2zdkcq2xj7cyv683sgv5mnjwcylz4r8wkrdhji28zyyh"; depends=[MeSHDbi]; }; + MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.13.0"; sha256="1nz96wyw99rz2wlsa59y36ddxg3i4vz116i4sjvm3ww2q71nimmr"; depends=[MeSHDbi]; }; + MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.13.0"; sha256="0irsxad7s1asllwajwy1bl2frs22sgwv60fdgnslgxmngg5v6jbc"; depends=[MeSHDbi]; }; + MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.13.0"; sha256="0qq08f245qsq6c9g38wcbn9gnhhx2wlsas3na1n5fycr5d19qbvz"; depends=[MeSHDbi]; }; + MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.13.0"; sha256="0mjg8dinlp1qqnf2h1lpyhig9ywa9x99isyvj2z37mrbk9mh6si6"; depends=[MeSHDbi]; }; + MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.13.0"; sha256="1xlcn55v3hyngdqmb5a3v64ll1cmm1yd8gbxw3sbbbnwp349w2jb"; depends=[MeSHDbi]; }; + MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.13.0"; sha256="13naakq86kgkbd8cif5gi7hzag64xkp8mddrwn4hc67i1dzlfyq0"; depends=[MeSHDbi]; }; + MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.13.0"; sha256="1b4sl5qiwh0vxm1svwqwsbrz2b88jmf7s14nwhb27431ml5lya03"; depends=[MeSHDbi]; }; + MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.13.0"; sha256="12qak3gzbr7hpg08nmpa69h0qw0v4kdplf10ilycc8ra1nrm9s8x"; depends=[MeSHDbi]; }; + MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.13.0"; sha256="1gp33ga0gdd09flz1c9q7hf3y8si238zb6hmn1v9pqmkww5pns3g"; depends=[MeSHDbi]; }; + MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.13.0"; sha256="0v3jlfg95fgh4f5gnqz1prb2lwj1bn7ggparxqzc63j0jws0wmgp"; depends=[MeSHDbi]; }; + MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.12.0"; sha256="1vhg07r0yk876zlzbn86nj6g91ilrnfrj3p5q2pkrcsic0m5nwcw"; depends=[MeSHDbi]; }; + MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.13.0"; sha256="12kc26wsg390hzhi4x2rmnm1s38sqs4nckkvrnmv70mjabg34w49"; depends=[MeSHDbi]; }; + MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.13.0"; sha256="171nrhd4nqpgcaaa62gj1di2xdsy3n8pp09lsbyq4slasmcd450w"; depends=[MeSHDbi]; }; + MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.13.0"; sha256="15nb1pbnfkhr83q06irghi4r7la5h6dn993la3sn1f8614hcr2wd"; depends=[MeSHDbi]; }; + MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.13.0"; sha256="1jgvbp0g4armmvg2w5rpxkx8zclll5nl6j6zbq9d1w7kk4lazw83"; depends=[MeSHDbi]; }; + MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.13.0"; sha256="0p3p4ld74hszgvv6xd5kmd7i9glv1l4mdqigglr1sk4vig1qwg47"; depends=[MeSHDbi]; }; + MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.13.0"; sha256="0pbd49s4n1mar58did4amrq5h78ic54gk6fnlyicddf7xg24qsp5"; depends=[MeSHDbi]; }; + MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.13.0"; sha256="1bga7nlfkyqqxq4m9c44l6hnswqa3dfbjzbnnyh8xmyp7m91kbj3"; depends=[MeSHDbi]; }; + MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.13.0"; sha256="0vaz520r54ydbb0why68hnigd924y3vk72357cms363qs6753dij"; depends=[MeSHDbi]; }; + MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.13.0"; sha256="1fjdb5h3dsgxk38c1fff30knnhav9w6pdl7vqdfdhq7642c6a1y4"; depends=[MeSHDbi]; }; + MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.13.0"; sha256="1vqwdf8sj0qid2df0qqhxlwbccmlmw63kmhdmz49fz3hxyr081z5"; depends=[MeSHDbi]; }; + MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.13.0"; sha256="1ixn62rn6vc17ks23hn9hkfyynp3p7mf9wq3rw9wiyyzpl6xgqw0"; depends=[MeSHDbi]; }; + MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.13.0"; sha256="118j864y3bn386cgjbwqwvdjflk7f510yzx451w9mcbfm7af8nqh"; depends=[MeSHDbi]; }; + MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.13.0"; sha256="094h4w8p0h81pqz4f1ykk0285fq5cayvkv01712bi85qqvyc8vh0"; depends=[MeSHDbi]; }; + MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.13.0"; sha256="19xj1x0bnxk8y3n7cjihp7aa1l6vvy6d3m949zv0cs9ia8mw5lrh"; depends=[MeSHDbi]; }; + MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.13.0"; sha256="1m2zi73d23hqa7dn8ab6bm3ynjc4mngakcba5wa3fkvv972kba26"; depends=[MeSHDbi]; }; + MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.13.0"; sha256="0sgp5hckh3waa1bp43rsnx6hlcvjr7a6yw46m6r3jzwdfpkmbh4v"; depends=[MeSHDbi]; }; + MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.13.0"; sha256="17k0h1jfiqwg6396m3mnsq3v042p8rck19wdhrgdasb6vp7rnk7w"; depends=[MeSHDbi]; }; + MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.13.0"; sha256="0z68zs190sv1v7r0059hf5c3mcrv2hil3hx3liycck2fiwarjw8d"; depends=[MeSHDbi]; }; + MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.13.0"; sha256="0nbc8710nwjlxxcslljcfj72qlq1k64i8p4jvyddjp8fj8anca9f"; depends=[MeSHDbi]; }; + MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.13.0"; sha256="0s45w1rnz79azqkk852knicviqc6jisxnpkzmm4j6ydjqibz4xv0"; depends=[MeSHDbi]; }; + MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.13.0"; sha256="1azm323gqax1ffixvqqghqbbmv7gfq5jhxhn1qr07raml1z56yiw"; depends=[MeSHDbi]; }; + MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.13.0"; sha256="0aix6k1lmdd4wms4dcmhw35gsyn07cvir60wslcabsvccjxbip4i"; depends=[MeSHDbi]; }; + MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.13.0"; sha256="1fb3xhwf08h91pmb7nmkz68zwrg8ac1sk55923baa6bn9bwli2ny"; depends=[MeSHDbi]; }; + MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.13.0"; sha256="0py8r05ix4k6xfm3jnzkgzk59gzc1bj43271rbgsmqlyh42abgay"; depends=[MeSHDbi]; }; + MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.13.0"; sha256="01mmn4021cscnp9wfz84rxckqqfn4p98bh4g1mlgwb7wsgf5nbc9"; depends=[MeSHDbi]; }; + MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.13.0"; sha256="1h4y7iqqb4fili8k4k11z5nmgd0hq8rw7p7awjwl6w5v4n9im0fs"; depends=[MeSHDbi]; }; + MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.13.0"; sha256="03rj89bmw4j2fc9lnpwx479j5m089jcj6iisf339bzcw1rgryi56"; depends=[MeSHDbi]; }; + MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.13.0"; sha256="1r2c422w1c88w4sh3s8mqpffx10322c3j44qz4ymxgvnarxc3fkh"; depends=[MeSHDbi]; }; + MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.13.0"; sha256="09s2d9hjzzhlig2bnnr5wkpxgf8pj4q9hwvs4sj3ylabvlg5ak09"; depends=[MeSHDbi]; }; + MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.13.0"; sha256="0l0w4px7wp58rqry4xbz2qh5jc97mmw7pvc1dnhkknr6n96fcpik"; depends=[MeSHDbi]; }; + MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.13.0"; sha256="1v4jcsdww7j0rnck3r30g8p57419ai676qlawmra1w6sdflqcpj9"; depends=[MeSHDbi]; }; + MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.13.0"; sha256="0a6mxwmvsh6zcyqw83y7y1axviqrzy2kdbalh2w8xa3yn72z65ln"; depends=[MeSHDbi]; }; + MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.13.0"; sha256="1n197svyc3p4xf3lc5qdjnhlkiadra43bxdqisk2w60jdijnxyh0"; depends=[MeSHDbi]; }; + MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.13.0"; sha256="1h7iqb9kcxcgslm8rab4469vvay3msd3w08bxv3h0mq7q870z0r8"; depends=[MeSHDbi]; }; + MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.13.0"; sha256="0mxs9bjs0pnj9aszfdydkw2kljcixwflvwcaz94my30444c1pi9l"; depends=[MeSHDbi]; }; + MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.13.0"; sha256="03fcidamz9x0xgyl5fsvphc7l5v2hvr4izf6ma2g34a1l1qhs0g1"; depends=[MeSHDbi]; }; + MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.13.0"; sha256="0vyi7awyy3v851ylc95xrn5wvbprq1qq3x1ypsb31qqny940m5rf"; depends=[MeSHDbi]; }; + MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.13.0"; sha256="18amkwn9wglj3a5hh9b0zfd23vizmj1nfa90jz93w1adksjlky7v"; depends=[MeSHDbi]; }; + MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.13.0"; sha256="1yrx8dj0lx77qny0dha68lwy3x3c9d4rkb8gng3by55zgp6hghms"; depends=[MeSHDbi]; }; + MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.13.0"; sha256="18x1q7md0zvb233qw1x6qs8k55hjkh1nd1cvizs2vhsbvzfw9yjz"; depends=[MeSHDbi]; }; + MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.13.0"; sha256="1fqi308z4psspykj1dkq76v94641wq9mnxwj3yzd9j49c8x45294"; depends=[MeSHDbi]; }; + MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.13.0"; sha256="0kakfkkmvmlk22g1aa86grahfbvk8hainar1760r5j8zrny8dvvr"; depends=[MeSHDbi]; }; + MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.13.0"; sha256="09gzlfp958bfkvas0hxaw6r319y02sygmb7ywxvdqj41sxyv63zp"; depends=[MeSHDbi]; }; + MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.13.0"; sha256="0cm3352chz3qaknq0an8gfsk2xbfn0jw5rqss3lrxcq35x1qk21a"; depends=[MeSHDbi]; }; + MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.13.0"; sha256="1hpj2cr8gixqlvfhnqvr5m3m1ngfdrvavqipf38m5cnm1wlqk9ll"; depends=[MeSHDbi]; }; + MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.13.0"; sha256="1ryrr1mr7w6h8xs4f79zmnnv8j4mkjckxjk4npcdiilfb2zg1y3j"; depends=[MeSHDbi]; }; + MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.13.0"; sha256="10ygdjx63ajd1vsgrn2f8isvaxdf2p6yg45yqrmjv3zhbvi1aav1"; depends=[MeSHDbi]; }; + MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.13.0"; sha256="153i3ln2m8rb0445hjplnim4h8dvvmf370zglcc5ww9dcx9m93nb"; depends=[MeSHDbi]; }; + MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.13.0"; sha256="0sm2sg246w35vfv9dam40x85mdv18fpi5j1k31432chrda867rf0"; depends=[MeSHDbi]; }; + MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.13.0"; sha256="0xqapk2fkaj719ih818rpb1ciiblw6zr6a83y0xpwrm8y29m3qh5"; depends=[MeSHDbi]; }; + MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.13.0"; sha256="0zfrjhrw2jrk6yzkmjnxfqws1a2sylpz1rz2im5n3xnlk6l5d0zn"; depends=[MeSHDbi]; }; + MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.13.0"; sha256="0v6g4wqsph3jhxziayijqn63cjp9z4i6jpm5wk431qp9zhr3vw4w"; depends=[MeSHDbi]; }; + MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.13.0"; sha256="1v2blabzcd1vdmc47m9rfknlf4865ppvfx8p2nm9cilrwp29w1pk"; depends=[MeSHDbi]; }; + MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.13.0"; sha256="0ymc65z935yzz0dxvrlx1wj40zmd7192jdav3736syhq6jrwmq3d"; depends=[MeSHDbi]; }; + MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.13.0"; sha256="1vnh6y9jr03cmncyka886wq59qnbpk1d3sqryxjd3d3hyhg7jz7b"; depends=[MeSHDbi]; }; + MeSH_db = derive2 { name="MeSH.db"; version="1.13.0"; sha256="1fdqzbka0bbpzphr64sjabddr1a7mrk310mzjfrwd6sll54am9q8"; depends=[MeSHDbi]; }; MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.3"; sha256="00d0yjcb5id7zacx4bzdwy4q6f4qvnnx8ph4d4xz1fmcbspz2qiz"; depends=[AnnotationDbi org_Mm_eg_db]; }; MoExExonProbesetLocation = derive2 { name="MoExExonProbesetLocation"; version="1.15.0"; sha256="0bvj3bji4bwwmxjz4b57n1aqypdibdmry30rfwmlxss1hav96sl7"; depends=[AnnotationDbi]; }; Mu15v1_db = derive2 { name="Mu15v1.db"; version="3.2.3"; sha256="0qchqkbx6ybijab8qhflxj33kwksfll1d3d3917vydjac9fzw1lz"; depends=[AnnotationDbi org_Mm_eg_db]; }; @@ -256,8 +267,8 @@ in with self; { Mus_musculus = derive2 { name="Mus.musculus"; version="1.3.1"; sha256="143zdf83gbfqhy8jm9df7gzhw5q3a64jrjrxrzjf0zd76j8s8j6y"; depends=[AnnotationDbi GenomicFeatures GO_db org_Mm_eg_db OrganismDbi TxDb_Mmusculus_UCSC_mm10_knownGene]; }; Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; }; OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; }; - PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.4"; sha256="1vl8anixkhcb9axlszk479yaw48bz1hhgmff41nqk8k8w4jkyn1y"; depends=[AnnotationDbi RSQLite]; }; - PFAM_db = derive2 { name="PFAM.db"; version="3.7.0"; sha256="0ih3xz8vk80xzqwgv6ff3rp1a24qhwd1v1frkq1m6d981g7ymdap"; depends=[AnnotationDbi]; }; + PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.10"; sha256="1gaq6dnxb83gnlcc544clljgvxwjw98idbq3v6ipqqlx3rdki2xn"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; }; + PFAM_db = derive2 { name="PFAM.db"; version="3.11.4"; sha256="1wkchf4hz484xld7fxzcmwc8mcbwzn83fz0hamg1mrp3x45djbmx"; depends=[AnnotationDbi]; }; POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; }; PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; }; PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; @@ -282,35 +293,41 @@ in with self; { TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.4.4"; sha256="18gmx57savyvvdkgnrvmc4xj3xrakybyx4pkfmpabnqy29z6n71q"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.4"; sha256="04jcx40z2380x760wbl686zvm780y38kls1js215jhmw7hff8md5"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.11.0"; sha256="1cwdj80yvpp1nv21jpyixlh2d50l201g50f08n6m0dkz6g7cw3v0"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Btaurus_UCSC_bosTau9_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau9.refGene"; version="3.10.0"; sha256="1v7q9jaaj1n2vabjj6ij6pz0g89nqlyy4y4g65irz6cm5mvik4q9"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Celegans_UCSC_ce11_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce11.ensGene"; version="3.11.0"; sha256="1b359pb762xhw64lnj9xfn6v6d4mjfsymmp6y5m1i4rrxiyw26q4"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.6"; sha256="1aq4jhn2c67wibq02l8drrjscmicbj6z35d0jksq8mwhz8k30zn6"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Celegans_UCSC_ce6_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce6.ensGene"; version="3.2.2"; sha256="1sgppva33cdy4isj2is8mfalj5gmmkpbkq9w1d83a4agcq31mi90"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.4.4"; sha256="1rl7yc2csc3fs2iri0kkvpjv34jnhkzc0jhh2a3hnyvhv55lzmf0"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.11.0"; sha256="0rigyddnqxb3dfrj93198j0l8s1flp051xbkmz0b55qp1cyrl5kr"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Dmelanogaster_UCSC_dm3_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm3.ensGene"; version="3.2.2"; sha256="1337x23rdmiiza83ms225kri37h16q5hw1lw0m577abcgip3d7c7"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.4.4"; sha256="18nwjnkbrvrkk6g5jns3h55874hk92fdbrfyjvvxk4daw0p7gii8"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.4"; sha256="1ck4ymlxj0fjrbgxzgdqgbyl3z4nqyc6bczw1cgwblmcv52h3cj0"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.4.4"; sha256="1cxdrdg3pqwi0rfk5bzik05r1hvxwsva862b7cf7pfcf202dkqg5"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Ggallus_UCSC_galGal5_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal5.refGene"; version="3.4.4"; sha256="15laq4kdm85755lk176lqsi2aryi9i85b4c1arrj4qgjkjrbylvq"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.11.0"; sha256="1gpm060wmlk1dm8s7p61afa0pba70zkamfh63gzcbdai5v74rkzx"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.6"; sha256="1isd4idvh9flvirrq760cw5lc1nwqjx0q76p9dp01wbbbsb3rfnk"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Drerio_UCSC_danRer11_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer11.refGene"; version="3.4.6"; sha256="0p5pr0fq1l9bp019w2214szf78y3nbw0p4819jcnba1v50y3336l"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.11.0"; sha256="1wxiih08p52bmjh6ywnbndvhz45fdsd1ixx1j7k181a8xd0cw47q"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ggallus_UCSC_galGal5_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal5.refGene"; version="3.11.0"; sha256="1bvbbw7c96jpzg8rz9gvkq4pf74bz3nj28br747r0wsll5lk398s"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ggallus_UCSC_galGal6_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal6.refGene"; version="3.10.0"; sha256="0ddibdn6shlhqfmlajnq754z4vad7gi55vb5y8j89nc2k1sc5a3i"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_BioMart_igis = derive2 { name="TxDb.Hsapiens.BioMart.igis"; version="2.3.2"; sha256="0590a2hkrpm33hmjg5g0gm6sig3xvc09m0q6lwmafgaajf90h6ky"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.4.0"; sha256="0i0xw0mcn403r911ijqdnrwg9k5bspdnjibfjvnhxq4h8vcfprn5"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.4.4"; sha256="13nv7l71piwf0frnwplwbac82ad7vxbw31yrfnqvnd1knh7ns99x"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.4.4"; sha256="1qgm66hnhqb3jyal8s43yri96k1xwb3vamb83894n86bh2g6nlca"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.10.0"; sha256="0lqir16l8wphhpaizmvgmjzk40p90rzgqndgvbms7ickinrpg59s"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Mmulatta_UCSC_rheMac10_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac10.refGene"; version="3.10.0"; sha256="1d1gvs6877649zwgja1z5x0mgci2kirbj7pzhb22xyinif3bhz26"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.11.0"; sha256="0plhdp4rjc79rq5gm81vb7b2y1hj036mbfafm55ixf2ggahibdqy"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.11.0"; sha256="1l6i064s8h9xp0f9n5cjs8n0q4fx1x70mmhzix006l3zicajpc7d"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.4.0"; sha256="0saxi1fdiwd38sfvy1rynd3v44rbp158jv6sjqcivvaqnd84zg9s"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.4.4"; sha256="01lgxc1fx5nhlpbwjd5zqghkkbmh6axd98ikx4b0spv0jdg6gf39"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.10.0"; sha256="0xs9npnhbwll7p62hibs02y4ac23jchdcr25i6a7qwq1kms82qk9"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmusculus_UCSC_mm9_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm9.knownGene"; version="3.2.2"; sha256="16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.4.4"; sha256="12fdcs4vv4l0d3sksdq76nwwj88f8psiy84rd1jhfw8kbxqrhh8y"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Ptroglodytes_UCSC_panTro5_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro5.refGene"; version="3.4.4"; sha256="00mirzp38iqm0l0py1a7mlslnbmkfzzk1krcg6jdyr8gan2sskpi"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.11.0"; sha256="0w94r2g1x9zgdbz8mkka41264q3ylf88m3rll594nn0h5g01g0yg"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ptroglodytes_UCSC_panTro5_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro5.refGene"; version="3.11.0"; sha256="0rmmvwmh9dqvjynka89jkdg8rnmr474adxsivwbpkxj371gyby31"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Ptroglodytes_UCSC_panTro6_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro6.refGene"; version="3.10.0"; sha256="0z4lq7wy48kkxnx29zmrbmrq4qjrj3digwxkw3x54qq80nvzxiza"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Rnorvegicus_BioMart_igis = derive2 { name="TxDb.Rnorvegicus.BioMart.igis"; version="2.3.2"; sha256="1099vkk8g3lxbgjxsm1p1m3mjj08nsw282mqxgzpnrxf7m6jll76"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Rnorvegicus_UCSC_rn4_ensGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn4.ensGene"; version="3.2.2"; sha256="0gv8bynfxxa471ap069mjvfrb1d7a0c4w5k8hxkr4hnsm44mschm"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.4.4"; sha256="1h9vmsp8lcr8yyvd1mjm81p8l660bjsx2kyhg3wm96izxgd4i7gn"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.4"; sha256="1k4g78kh52ppr4fd5z4bwzzgw8jg6j3zi129fnny4ks6zkadhlw6"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.11.0"; sha256="0hlh3c559m4ny3b5sfdk7f8rardai13p41fx2p9p2chd95s0j3p1"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.6"; sha256="1piqli0wdq3r289is8lmijnshm8rmx7rphp2qfymlvc0jmvgs9wr"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Scerevisiae_UCSC_sacCer2_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer2.sgdGene"; version="3.2.2"; sha256="0l5gcwhbvzx60p9hjhd31angamb0hkgdg2avga7341j77rd5pwza"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Scerevisiae_UCSC_sacCer3_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer3.sgdGene"; version="3.2.2"; sha256="1sjwl7fb3l3zxxbk8gkvzxwdsind0xjj7kmh7dachm6fi17hpb3d"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Sscrofa_UCSC_susScr11_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr11.refGene"; version="3.4.4"; sha256="1c6kbkp6iq6zzpg6wpnbgclp1vsdhh19g220va8b61jhgcccr2c6"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.4.4"; sha256="1yvjwsq9cn9kyjir53n20fbi8nyf1m64zim18w5mv05w9rn86gdl"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Sscrofa_UCSC_susScr11_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr11.refGene"; version="3.11.0"; sha256="1ikqammkzqdza8948jwdr18mslm59izni690r2lm04lrpmg4c6fh"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.11.0"; sha256="0z1blh92w81mwv674fng5m50gzsy9pxymmy1q773h54k9qlksvy3"; depends=[AnnotationDbi GenomicFeatures]; }; XtraSNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.12"; sha256="0a27y0ngg760y5wwcja4dpd7cjd8h5zg1s2b3a1r54s21k65zny3"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.12"; sha256="0k823fvqjmdkmd47m7wyra6jxmv8lnk2i1xl4pp0mh3zgb87hgfb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.12"; sha256="0d4q32ij2x4726wvw06sgmivid0n94vfdmszdyh607xlcahqxa5z"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; @@ -320,22 +337,22 @@ in with self; { agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; }; alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.0.1"; sha256="1v714abdpzhwa450zr66s1yjpxl6lkwi3wjbwn8phn87cgf8rj7q"; depends=[AnnotationHub]; }; alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.0.1"; sha256="0im87mrh1n6kv84q6lm4y15lb93rih88zdpa0jms5az91lyvsf25"; depends=[AnnotationHub]; }; - anopheles_db0 = derive2 { name="anopheles.db0"; version="3.7.1"; sha256="0f940ybh7kr30d9pkqhr0w2yrwsqa25yxbhzhlccn4a6a6svzcwb"; depends=[AnnotationDbi]; }; - arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.7.1"; sha256="1d7cnhbm44dv0g6mjv76sdr8dgni34fbffzkk95rqikdqag8s9cy"; depends=[AnnotationDbi]; }; + anopheles_db0 = derive2 { name="anopheles.db0"; version="3.11.2"; sha256="1f2lzva0w841655fq9f8zvaj00w9h965af2nki1b7258jwal857h"; depends=[AnnotationDbi]; }; + arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.11.3"; sha256="1vl28gxqgl48s1aii3r0y984vdic9g8x7y17k85cgv85j45n1dv6"; depends=[AnnotationDbi]; }; ath1121501_db = derive2 { name="ath1121501.db"; version="3.2.3"; sha256="1zrf26cfhlmrb5pyfawwk4v8l1mflx8c43zsxrwkbmxzc1jnc7dv"; depends=[AnnotationDbi org_At_tair_db]; }; ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; }; ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; }; barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; }; barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; }; bovine_db = derive2 { name="bovine.db"; version="3.2.3"; sha256="1i8mgk60hlmvngb4c727wajix9mca9gfg0pzxrnfcjwi87rpw7fy"; depends=[AnnotationDbi org_Bt_eg_db]; }; - bovine_db0 = derive2 { name="bovine.db0"; version="3.7.1"; sha256="17q8hkfips8znwnkk062m8xsvcpaf6ynpf2jjszrcm02495vbw45"; depends=[AnnotationDbi]; }; + bovine_db0 = derive2 { name="bovine.db0"; version="3.11.2"; sha256="17kgw3nps8gh2i2wh10wz1zjzgz5sz5vyf28y3s206jnpsnmglss"; depends=[AnnotationDbi]; }; bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; }; bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; }; bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; }; bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; }; cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; }; canine_db = derive2 { name="canine.db"; version="3.2.3"; sha256="0wbyzhk827l49yxzimvznx9z6yag5nd4djm2hddysf5nk1ndapqs"; depends=[AnnotationDbi org_Cf_eg_db]; }; - canine_db0 = derive2 { name="canine.db0"; version="3.7.1"; sha256="1z691m0ap7x5sb7pbxlk8cs5s6hwvgvdbjjdxlfp8vilciwrsgwn"; depends=[AnnotationDbi]; }; + canine_db0 = derive2 { name="canine.db0"; version="3.11.2"; sha256="1rlhpfj7gapjbzcya0k1cdiysxmp6r3wy1vh55j01z9v4k4lfqk9"; depends=[AnnotationDbi]; }; canine2_db = derive2 { name="canine2.db"; version="3.2.3"; sha256="1gzd2x23dkfiwnwqz9pdn5lp4l8aby525mhscn3xakw633si4dvz"; depends=[AnnotationDbi org_Cf_eg_db]; }; canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; }; canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; }; @@ -345,10 +362,10 @@ in with self; { celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; }; celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; }; chicken_db = derive2 { name="chicken.db"; version="3.2.3"; sha256="1rq9afkpcpv8qi75shvnsw8di3ycai4ylv7jq9zwj51zlwlw9cpq"; depends=[AnnotationDbi org_Gg_eg_db]; }; - chicken_db0 = derive2 { name="chicken.db0"; version="3.7.1"; sha256="0jib8pamnqzppk2x1i8c7szrwvhhilsxbk2x83ajzbzk3df3rvnd"; depends=[AnnotationDbi]; }; + chicken_db0 = derive2 { name="chicken.db0"; version="3.11.2"; sha256="0xgj8fjcdv6xswg6y4m5lqh01s1scinijcxvmibl6sw1c3xn7g3v"; depends=[AnnotationDbi]; }; chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; }; chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; }; - chimp_db0 = derive2 { name="chimp.db0"; version="3.7.1"; sha256="0bgn2yjj1jg0dswn5m4n78lydlzz7qb8fxpm8pl7909xrkcd1lpw"; depends=[AnnotationDbi]; }; + chimp_db0 = derive2 { name="chimp.db0"; version="3.11.2"; sha256="01lhhzmqiv5yjnnc4msiqxwx2nbg19j6dbgvph4l69a75yfs2fg7"; depends=[AnnotationDbi]; }; citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; }; citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; }; clariomdhumanprobeset_db = derive2 { name="clariomdhumanprobeset.db"; version="8.7.0"; sha256="039bsywnim0nr8b3w6vkj4m20j0pggnm6ajjz24bnlikm9zzrs6l"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -371,14 +388,14 @@ in with self; { ecoli2_db = derive2 { name="ecoli2.db"; version="3.2.3"; sha256="07vc5fl2zq2f65ndcldyzvwfpl65snp6ygvw658j4036lbb7cpjl"; depends=[AnnotationDbi org_EcK12_eg_db]; }; ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; }; ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; }; - ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.7.1"; sha256="075ngixclxh1qqgn5p1afxyx8610rfxj1ax3iqmbvqqlyq9nc9ar"; depends=[AnnotationDbi]; }; - ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.7.1"; sha256="1p3lvf92l44kqn47jhgwd6nqnjl0ksnvmsj1052lrbalh5xl3rcd"; depends=[AnnotationDbi]; }; + ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.11.2"; sha256="0rnnjh16grl9d9jsfhm6vi6898aziwvr56rp6zc7yzz913hkgwkj"; depends=[AnnotationDbi]; }; + ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.11.2"; sha256="0naxgp5q6di565rpp5k04lfv6p2vw9ski7m75f2nk0ksdlpywx9f"; depends=[AnnotationDbi]; }; ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; }; ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; }; ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; }; ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; }; fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.7.1"; sha256="19isa4x8js0pdb4k8a11bw3bzmzv6jc4jphzrvav7piqkvrgykzx"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - fly_db0 = derive2 { name="fly.db0"; version="3.7.1"; sha256="0l617pksrcgb96bm25qsxlyjz7jp7hqk1sfba516l2gd2rvbp7rs"; depends=[AnnotationDbi]; }; + fly_db0 = derive2 { name="fly.db0"; version="3.11.2"; sha256="19323k5pd5xa9m8cqykyig0gzwlk5wcssi1k8drbvl8f2jz384bn"; depends=[AnnotationDbi]; }; geneplast_data_string_v91 = derive2 { name="geneplast.data.string.v91"; version="0.99.6"; sha256="0mc26d0sgmpmfmqsqinqv5k6vhg0hlc8hsjkcnvf369yav224nq1"; depends=[]; }; genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; }; genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; }; @@ -445,14 +462,15 @@ in with self; { hguqiagenv3_db = derive2 { name="hguqiagenv3.db"; version="3.2.3"; sha256="1ylji60m2zb8ialbl5wdrxy425sriq17z3bg8ikvc5b5gjsw6l7w"; depends=[AnnotationDbi org_Hs_eg_db]; }; hi16cod_db = derive2 { name="hi16cod.db"; version="3.4.0"; sha256="0ydi0jljx8igzrqaspr9yywv43h2zimm9fk7xc55nm6mnp5jl7kl"; depends=[AnnotationDbi org_Hs_eg_db]; }; hivprtplus2cdf = derive2 { name="hivprtplus2cdf"; version="2.18.0"; sha256="1jv4qzajikz7x4vq87wzn7hf6hx9r4c2gkjhfp93kqzwzddmigf4"; depends=[AnnotationDbi]; }; - hom_At_inp_db = derive2 { name="hom.At.inp.db"; version="3.1.2"; sha256="1ka9ssjfxml9sz9k83bs6icbkkyz581svh0pwpvpifzg79qapzwi"; depends=[AnnotationDbi]; }; - hom_Ce_inp_db = derive2 { name="hom.Ce.inp.db"; version="3.1.2"; sha256="1iw2xy8yfx1khxy4fkilfq6ms0m9l4q8lz4y0y50fvsh8iiygy98"; depends=[AnnotationDbi]; }; - hom_Dm_inp_db = derive2 { name="hom.Dm.inp.db"; version="3.1.2"; sha256="0akg9ay7rgb3j5ckjmv4q9gvnnfhyfaad1phfr1j8zmkdr50x4kw"; depends=[AnnotationDbi]; }; - hom_Dr_inp_db = derive2 { name="hom.Dr.inp.db"; version="3.1.2"; sha256="1x4iikf8b5awmg1m9x9wn2fzwsqq93l8yibrkc4r7x7dvm005yg7"; depends=[AnnotationDbi]; }; - hom_Hs_inp_db = derive2 { name="hom.Hs.inp.db"; version="3.1.2"; sha256="0fixdcc80a3vb735pqafzva5cw02ygkf5pfy1ncws3f84s3p3zld"; depends=[AnnotationDbi]; }; - hom_Mm_inp_db = derive2 { name="hom.Mm.inp.db"; version="3.1.2"; sha256="034b9wiis7w7zj3647s0fh1jspyfn654yf0lm5ymp65sww965cxh"; depends=[AnnotationDbi]; }; - hom_Rn_inp_db = derive2 { name="hom.Rn.inp.db"; version="3.1.2"; sha256="02smfm88y72dgmj2kna9v7sbcg5dxr8b4sqgy6i8b3zw3a6776yp"; depends=[AnnotationDbi]; }; - hom_Sc_inp_db = derive2 { name="hom.Sc.inp.db"; version="3.1.2"; sha256="0l9nly3k7jnf6g1qnwyw22ga1hdyjdvn3hrlway8pb9rv7279bil"; depends=[AnnotationDbi]; }; + hom_At_inp_db = derive2 { name="hom.At.inp.db"; version="3.1.3"; sha256="1mb5qa01w773rz8jnpalpxb4bzk0143pxm9za1np5lbfzgw7gqrz"; depends=[AnnotationDbi]; }; + hom_Ce_inp_db = derive2 { name="hom.Ce.inp.db"; version="3.1.3"; sha256="1nqgb8b27rx7avnq42fqmcs1pi3dvbmf93z797sgsrcj8gpm69r7"; depends=[AnnotationDbi]; }; + hom_Dm_inp_db = derive2 { name="hom.Dm.inp.db"; version="3.1.3"; sha256="0af9nvs8x1rc30lx2b3099n42waxylchhpzv4a3xgsrrs6q84z5m"; depends=[AnnotationDbi]; }; + hom_Dr_inp_db = derive2 { name="hom.Dr.inp.db"; version="3.1.3"; sha256="1qvnqfdlw5ikhpmihmwi8a8nwmsrgbp8rymrnaxi5xqj9rqlm7qd"; depends=[AnnotationDbi]; }; + hom_Hs_inp_db = derive2 { name="hom.Hs.inp.db"; version="3.1.3"; sha256="11k8wi40m3ppwbjak7b7yv7flr274fxpx7c8b50l1zxm01dppydz"; depends=[AnnotationDbi]; }; + hom_Mm_inp_db = derive2 { name="hom.Mm.inp.db"; version="3.1.3"; sha256="0kdgyzriyg4r19dbcvwvjcd0ziyf1l2ny8sdka7v9lnaga6pq4kn"; depends=[AnnotationDbi]; }; + hom_Rn_inp_db = derive2 { name="hom.Rn.inp.db"; version="3.1.3"; sha256="00cdcfvncqw1ldq7pr2bymy5zhmxclv7xgi0kvkhhw0i263619yc"; depends=[AnnotationDbi]; }; + hom_Sc_inp_db = derive2 { name="hom.Sc.inp.db"; version="3.1.3"; sha256="1v97yb19a1rl7n81q852snwrgf8spjwas74chnv87r6h355yg1n4"; depends=[AnnotationDbi]; }; + hpAnnot = derive2 { name="hpAnnot"; version="1.0.1"; sha256="16isg9byqc9ghipg7626mrijcs0bngz6n6hxz3m616v21cjyingj"; depends=[]; }; hs25kresogen_db = derive2 { name="hs25kresogen.db"; version="2.5.0"; sha256="1yp25ifm3bwzkzm8vimlxw5slini7drhvmh5ggh0z80sfrjyndyf"; depends=[AnnotationDbi org_Hs_eg_db]; }; hspeccdf = derive2 { name="hspeccdf"; version="0.99.1"; sha256="07azl9zpg552ic7li14p6n09ba3jbqqclwffjfpd2vc249x0n4fw"; depends=[AnnotationDbi]; }; hta20probeset_db = derive2 { name="hta20probeset.db"; version="8.7.0"; sha256="12m58w0av2b806w75df7spg72d0v7mr7vlhsgdc9h221r0g06vgx"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -509,7 +527,7 @@ in with self; { hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.7.0"; sha256="0ba3yvizj9ya61rr9ik2hdxhy0q67908x16n58jjjfq8wf96h7sp"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.7.0"; sha256="0chkxxpfl696qqiai3i30ylpsihyicbs0hbcni6nmnhfz9k5800g"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.7.0"; sha256="0wk2lg74zkgxh6frmikhk4bxndiyvc1j7mhvz65w8fxfqiwfyf5i"; depends=[AnnotationDbi org_Hs_eg_db]; }; - human_db0 = derive2 { name="human.db0"; version="3.7.1"; sha256="1vikw70n828prccs1vlnw3f4rwp5lsp5cb02f56hih4n3mapky9f"; depends=[AnnotationDbi]; }; + human_db0 = derive2 { name="human.db0"; version="3.11.2"; sha256="1219w285fjpws76bv8q1a6c9qv8rkfyaqqfnx0vgf0nds75msc5y"; depends=[AnnotationDbi]; }; human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; }; human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; }; human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; }; @@ -547,7 +565,7 @@ in with self; { m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; }; maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; }; maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; }; - malaria_db0 = derive2 { name="malaria.db0"; version="3.7.1"; sha256="1ljk5xfshp96pibw9k1yb5cl664iashb9rhc1y1bjalyidraznk7"; depends=[AnnotationDbi]; }; + malaria_db0 = derive2 { name="malaria.db0"; version="3.11.2"; sha256="01825x7r26a6gp8lhd239gdrg8jxnfsl5cdffj1z0d03s4wbjnv0"; depends=[AnnotationDbi]; }; medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; }; medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; }; mgu74a_db = derive2 { name="mgu74a.db"; version="3.2.3"; sha256="0xd2gbvry061409kiwq99i13641g8x6m9kbgg4yr0x6m9dh7hxa8"; depends=[AnnotationDbi org_Mm_eg_db]; }; @@ -601,7 +619,7 @@ in with self; { mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.7.0"; sha256="1s7cdjglrc9qqf3gsmhsyycfa0h5qrbk28i4z3z4mb9g6242r1r4"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.7.0"; sha256="0l8y2zbhykzqs9hbjhj1cys1mzdjhmi4rjv4l3v0sv5969h6sl96"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.7.0"; sha256="1mkw3997mqr7ssa60zpwhlyajda51smcrnlnxwif78g99yj0nrxb"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mouse_db0 = derive2 { name="mouse.db0"; version="3.7.1"; sha256="1fyawqxf1m6cnl6p41q1bqb75k59n8ixn3kw8gf4kq34cldl0h9k"; depends=[AnnotationDbi]; }; + mouse_db0 = derive2 { name="mouse.db0"; version="3.11.2"; sha256="0cwacdipbw6j1nxwjgjryqw81vwixcgnrymhva498g22nid8j3vk"; depends=[AnnotationDbi]; }; mouse4302_db = derive2 { name="mouse4302.db"; version="3.2.3"; sha256="1wdgqawqzkr39xwl32cap4ksr59p7r7i83g82h1ss4q3lm58gxpm"; depends=[AnnotationDbi org_Mm_eg_db]; }; mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; }; mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; }; @@ -638,25 +656,26 @@ in with self; { nugomm1a520177cdf = derive2 { name="nugomm1a520177cdf"; version="3.4.0"; sha256="0skd5b76si0vydzk5qhg4f1a1j655alxflm9sqci8fi8safwj96a"; depends=[AnnotationDbi]; }; nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; }; oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; }; - org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.7.0"; sha256="101xvx62y1y2kbiv9j427879zhjindm1hzb9iscinmf10lwhyj8q"; depends=[AnnotationDbi]; }; - org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.7.0"; sha256="0i5dv4lc8dh27ipf37wk84y75fmnbja0bbllzbchb459c9bpwcf9"; depends=[AnnotationDbi]; }; - org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.7.0"; sha256="0vdfgh2yrawz8bbszgxl5vvq6iqvn25p5l01j7zhlmx035jcbfak"; depends=[AnnotationDbi]; }; - org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.7.0"; sha256="1w5br1ss4ha8wv4v2saj7cmbjc2jw0dyj2f2y269l078z31wcnaz"; depends=[AnnotationDbi]; }; - org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.7.0"; sha256="1y3kda375f327bv31cfp470546hvcdw5a8bl3z5h1dm6c556z7cl"; depends=[AnnotationDbi]; }; - org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.7.0"; sha256="1pqjrzlyg72bjpy8zsxvaglc7jsv176bnyi87xdajmkvsgxpm7b3"; depends=[AnnotationDbi]; }; - org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.7.0"; sha256="1xs5wsbcpy0iwbjyiv7fax57djqc529ai5fk1qfsdcvlja3cpglx"; depends=[AnnotationDbi]; }; - org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.7.0"; sha256="0ii3k9b0rr6bkb16m108if9liinw7md4mgh8fz4yd4gh8a7zcli7"; depends=[AnnotationDbi]; }; - org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.7.0"; sha256="1zcqbr4sds24mcggg71g4j6v0wp7fri75d1l0bhp0x245b9k5vnw"; depends=[AnnotationDbi]; }; - org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.7.0"; sha256="0lyzznrnyyw9lsdp58a0sc5jw2lrccsv44dvrza2ix8mx46gplis"; depends=[AnnotationDbi]; }; - org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.7.0"; sha256="1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim"; depends=[AnnotationDbi]; }; - org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.7.0"; sha256="1i3nvrd3wjigf1rmgxq1p5xxc3p8v02h5gwi62s30rkrsyjjfjxx"; depends=[AnnotationDbi]; }; - org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.7.0"; sha256="1c6mwknyf8cq824qm3cax0a2l3wd2h9dw6pylhwm0x7viz2xf2iz"; depends=[AnnotationDbi]; }; - org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.7.0"; sha256="0s3ibaqvjw3sg1j22pfgzw1gcb9pv9b8a4livj9ph73jqhx03r5i"; depends=[AnnotationDbi]; }; - org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.7.0"; sha256="1n9qd34gjkjgbbz07h6ibzgbq9id81z6ni01vmaki3554gmfk3dl"; depends=[AnnotationDbi]; }; - org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.7.0"; sha256="10293py12jar1ab3s1b872c5gxpw9d2d5sxk4iq5g38i0gcf5gsc"; depends=[AnnotationDbi]; }; - org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.7.0"; sha256="0dwaw9v4c1d5wr6skaf97s013wqwqm31bybhggm1fm59aa6mkdwv"; depends=[AnnotationDbi]; }; - org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.7.0"; sha256="1s5zizma3ba00z8q1k9h4fajxwj3f2jg1034rfwqlhsscwrhv5ih"; depends=[AnnotationDbi]; }; - org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.7.0"; sha256="002i6aacrirvyzi14r26fgr6cqc0bfwn0wg83sbligp2dwqm0bb4"; depends=[AnnotationDbi]; }; + org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.11.4"; sha256="1nl54mxhfggbsyd05jz6pn7g9arb6ikv05dibhwba3vhf57kny8i"; depends=[AnnotationDbi]; }; + org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.11.4"; sha256="1yhrnssmdjlh3hgiqii4j0bnvpp9bs1z9vi1qm7v2cj820pn7mck"; depends=[AnnotationDbi]; }; + org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.11.4"; sha256="1ypfb1ny0s23mz8958cvbglf4dgqackw4ljw3zhx5nb4ad3r2r5i"; depends=[AnnotationDbi]; }; + org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.11.4"; sha256="1ay2sv4hbiw2g7qy9m1pmpb8n9xhfjj7y9sdcf5sii8j7yjk8yy0"; depends=[AnnotationDbi]; }; + org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.11.4"; sha256="1z43kn96mq8km31ihcjhswnd67v31f2v0ksb65vhhhc3qxfgxs6c"; depends=[AnnotationDbi]; }; + org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.11.4"; sha256="0sn75clknjpii8h2lw9nn7psswcxn5g3gy1kqafbgsy9bp63zycc"; depends=[AnnotationDbi]; }; + org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.11.4"; sha256="0s1gp827h1m99xwmr372d846gaw3y2dwa2hdarp63621jyyh6d8z"; depends=[AnnotationDbi]; }; + org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.11.4"; sha256="0gx64w3fwf8h3mdnfwhsfylf12lp4iam4mhlr3mcc81dwgzf67dr"; depends=[AnnotationDbi]; }; + org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.11.4"; sha256="1nri5cxi619iblhczz637crgarqxncvap2672fgb8snwrzqvdsrp"; depends=[AnnotationDbi]; }; + org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.11.4"; sha256="1p8bid5nqr9ihl1cyq1i8chpwx5mvdx7610qjwj7in22l2ribbi4"; depends=[AnnotationDbi]; }; + org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.11.4"; sha256="0mg2098sss1d2gwdx72qssc5xpl4p7smfdry508hfpm4f1dr91k0"; depends=[AnnotationDbi]; }; + org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.11.4"; sha256="1sss35risk2gzb5yn3j4x2dz4pl98mw0z131a0p1318a0srspihj"; depends=[AnnotationDbi]; }; + org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.11.4"; sha256="0z4mddwixk4dwb3jp31knqyxg50vcnp1wch6d5mzblg6jmwbc4w7"; depends=[AnnotationDbi]; }; + org_Mxanthus_db = derive2 { name="org.Mxanthus.db"; version="1.0.27"; sha256="1jqwsdjz1d8fwqhq26lavb2kq739ddlb8khsh4b096vhnwv3dxg5"; depends=[AnnotationDbi AnnotationHub BiocFileCache BiocStyle]; }; + org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.11.4"; sha256="1bp2bp4b2kmfia7wvr4gjncwc2n5ya0y2wv5p6lad6c7yz4f67c3"; depends=[AnnotationDbi]; }; + org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.11.4"; sha256="1xhzdkbml9l5qnmhkfn5kfbjqn5fqjhnh14z8ldy4c7v3cwxdid0"; depends=[AnnotationDbi]; }; + org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.11.4"; sha256="0bp46dc5md7vw9j0y2cim6zlvwkgcbhaiqxl89d6xalj0q9wjqmn"; depends=[AnnotationDbi]; }; + org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.11.4"; sha256="0cj5050n86nw85p0h960qnhq82a94xs14zf67k3qwqqv49x8hvaz"; depends=[AnnotationDbi]; }; + org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.11.4"; sha256="02k6gg9537d7nmb9pjmz6ss82j9nbmiamckaynv002vlkkxg9lps"; depends=[AnnotationDbi]; }; + org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.11.4"; sha256="0qjf6zv00k0ial9c3vszb4nf6i11qqjmg9njfp9rkla9c73pihwf"; depends=[AnnotationDbi]; }; paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; }; paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; }; pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; @@ -832,8 +851,9 @@ in with self; { pedbarrayv9_db = derive2 { name="pedbarrayv9.db"; version="3.2.3"; sha256="0x9m9m4nmdhc0j5244avmlfwljcpw0sh44l1b00cx05swi3vmjlp"; depends=[AnnotationDbi org_Hs_eg_db]; }; phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.7.2"; sha256="1jmc4k4zgkx5vr2plnidnd9bidlwlb0kr7mjg60cqjw7dq7jl1fa"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.7.1"; sha256="0dka39rvx4d3wbcjypcgvc19s6cnxkkfywa4irv23kpibq1sjyv0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; + phastCons30way_UCSC_hg38 = derive2 { name="phastCons30way.UCSC.hg38"; version="3.11.1"; sha256="0g7mn3wa9l9hpks828n82rads1ls5mjgh6dfgk3iw1nrl0ylws4v"; depends=[AnnotationHub GenomicScores]; }; phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.7.1"; sha256="105isdrb3nsy30wd8yy9vrrv8b7c8izc11xqqixg6rcriacd0rl0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - pig_db0 = derive2 { name="pig.db0"; version="3.7.1"; sha256="06hwggby003y64mhrk4b48zxnh3csqi5hm9y42iccz17qs7j1jmi"; depends=[AnnotationDbi]; }; + pig_db0 = derive2 { name="pig.db0"; version="3.11.2"; sha256="12pidwjb2wjzcz72m8jcp8spr6nkxfhkl75qr5b062pyw4mkrp6r"; depends=[AnnotationDbi]; }; plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; }; plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; }; poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; }; @@ -862,14 +882,15 @@ in with self; { ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.7.0"; sha256="135cgn92raa6f9yiw4k25rn04rpg5mdnf969l66x4s1jcc0rwscq"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.7.0"; sha256="0lp4prymrm3cp8yq1hba9bylw22hcvlx7piqpvjx51hj79yrwdig"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.7.0"; sha256="1b7s2r4w1yy2v3srs6n931zc64qf58nq4apmq2ag5nx50wspima1"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rat_db0 = derive2 { name="rat.db0"; version="3.7.1"; sha256="1k7vx0iihb5sgaicrxbv33fi7kjwqfskbwn37aj769nqxq66fx8h"; depends=[AnnotationDbi]; }; + rat_db0 = derive2 { name="rat.db0"; version="3.11.2"; sha256="0v7agg9rx4fifqp7p95lxh0fkwx891w043p0qqqpfksvrbshx13y"; depends=[AnnotationDbi]; }; rat2302_db = derive2 { name="rat2302.db"; version="3.2.3"; sha256="0vj4vkx091m34xqjh6gv6m2iqszvn5rq3kvnpyq3fin5v42wrsr1"; depends=[AnnotationDbi org_Rn_eg_db]; }; rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; }; + rat2302frmavecs = derive2 { name="rat2302frmavecs"; version="0.99.11"; sha256="0qy5hf86lrkn20yg6d46kcw9fjc0qhsbzbyavaj1v2zl34xvr1ii"; depends=[affy frma]; }; rat2302probe = derive2 { name="rat2302probe"; version="2.18.0"; sha256="1zwjgbcb9d4ib6z1iyjz8x11lq0b5gqs08y6j3idb5wf3i2p521v"; depends=[AnnotationDbi]; }; ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; }; rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; }; rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; }; - reactome_db = derive2 { name="reactome.db"; version="1.66.0"; sha256="18kh68sx9825bi92904xcygjh9jsbxyhsp4ghw1wh160na65gy3v"; depends=[AnnotationDbi]; }; + reactome_db = derive2 { name="reactome.db"; version="1.70.0"; sha256="05wc4fp0faq6h3kq5rwafnips043as31yq11mrjngfxvf5i10srg"; depends=[AnnotationDbi]; }; rgu34a_db = derive2 { name="rgu34a.db"; version="3.2.3"; sha256="1s2sd5bqlj4qhamhrnb9byxn8nc7z265mqy7zzkgxcd6a2k472vp"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; }; rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; }; @@ -883,7 +904,7 @@ in with self; { rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rhesus_db0 = derive2 { name="rhesus.db0"; version="3.7.1"; sha256="1k695lwbwznk4i03dqpfyk0nx4s9n1qlgh9ccfxjy591lraj7b4j"; depends=[AnnotationDbi]; }; + rhesus_db0 = derive2 { name="rhesus.db0"; version="3.11.2"; sha256="06vq8zzy5kxp9winq2vxw5b803dbhb4sh057k9rl2jy32vmblm45"; depends=[AnnotationDbi]; }; rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; }; rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; }; ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -922,8 +943,8 @@ in with self; { vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; }; wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; }; wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; }; - worm_db0 = derive2 { name="worm.db0"; version="3.7.1"; sha256="0p5rzmkars7kl4y4mlq6jbmgp1mdfw3jcnvhl50dnpqc7h28y4xf"; depends=[AnnotationDbi]; }; - xenopus_db0 = derive2 { name="xenopus.db0"; version="3.7.1"; sha256="067vs7b2slmragqqnfpgy6m187cz1rx9r5agizrjycndzdzkpy3k"; depends=[AnnotationDbi]; }; + worm_db0 = derive2 { name="worm.db0"; version="3.11.2"; sha256="0w124pn96yvl0ksb0bncwxdhfzcg491s60rfla3gr17pfg1h2klv"; depends=[AnnotationDbi]; }; + xenopus_db0 = derive2 { name="xenopus.db0"; version="3.11.2"; sha256="1l9pi5ayrkrq5gswms33z3ldip3kj2bn5pj6nmy1dzx9i4d0llnr"; depends=[AnnotationDbi]; }; xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; }; xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; }; xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; }; @@ -935,7 +956,7 @@ in with self; { ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; }; ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; }; ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; }; - yeast_db0 = derive2 { name="yeast.db0"; version="3.7.1"; sha256="1shjbflvlxipiyapwd6jpqs9mp8nyr3j63wcpnaznmxv0z5k0fw8"; depends=[AnnotationDbi]; }; + yeast_db0 = derive2 { name="yeast.db0"; version="3.11.2"; sha256="1wbywd8lbbgndhyy0nwdxc91cq5s90q67q6wpdikzc5m7px3v4qx"; depends=[AnnotationDbi]; }; yeast2_db = derive2 { name="yeast2.db"; version="3.2.3"; sha256="1xns0129ifklipbardybkjyxfwnlklavq0k6s15wk2iwk7vxa33s"; depends=[AnnotationDbi org_Sc_sgd_db]; }; yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; }; yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; }; @@ -944,7 +965,7 @@ in with self; { ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; }; ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; }; zebrafish_db = derive2 { name="zebrafish.db"; version="3.2.3"; sha256="1n6p04hlm5c32fnficx294s7n7izy5460avagw8hx1g5xryhdzqk"; depends=[AnnotationDbi org_Dr_eg_db]; }; - zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.7.1"; sha256="1x9s6sxxgijjnrvg4fggnqhv10zwsfw6hy1qa93rjmpgqpr7ad20"; depends=[AnnotationDbi]; }; + zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.11.2"; sha256="1lvkxhql6rm3bs2pszk0d6ib8xjrhqmgznn9lnpn0v2lw42ld3vf"; depends=[AnnotationDbi]; }; zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; }; zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; }; } diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix index 04f4d25def2..0fb24f27daa 100644 --- a/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -4,363 +4,397 @@ # Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.8"; }; +let derive2 = derive { biocVersion = "3.11"; }; in with self; { - ABAData = derive2 { name="ABAData"; version="1.11.0"; sha256="0ihr0av55kfg36igb1dn5q132q4gnyaf041xqi4rw7n67525qdap"; depends=[]; }; - ALL = derive2 { name="ALL"; version="1.23.0"; sha256="1m3bx001qngwx0h64kv187q7bsxm22prfm1npbjrfzhg4vjn8rnf"; depends=[Biobase]; }; - ALLMLL = derive2 { name="ALLMLL"; version="1.21.0"; sha256="14pwfwndrapk1h824hw6dyxlkicxqylx56kky9zg8q0qfm5w1ygf"; depends=[affy]; }; - ARRmData = derive2 { name="ARRmData"; version="1.17.0"; sha256="1y6lld8ijxw2g1qxs1bzvjppwfax6yv1ww18axn9553ibjznis7b"; depends=[]; }; - ASICSdata = derive2 { name="ASICSdata"; version="1.1.0"; sha256="050ihbi20chjd5gvyf5jcmjhb1kvdvz80nh5aw1yp8ydfgdnqqwg"; depends=[]; }; - Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.17.0"; sha256="1zcai5p4vgpmdv4zdnrqkdszg6wiq6ajj4vbas4hcyp5yglfby3h"; depends=[]; }; - Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.15.0"; sha256="144wb8sniifglqdryfvpnxx7hv1v2c6djqzbk4mq4lkrp64a251n"; depends=[]; }; - Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.19.0"; sha256="0glp22hqblylqc9n8jcx19k2p7ld9ykdnvqgr7nbipsvm4zgnkn1"; depends=[]; }; - AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.19.0"; sha256="0nf3260aqz4831q8i83nqlcf5hq9b988ly5rhrwyb8mv2ncs0z9k"; depends=[]; }; - Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.19.0"; sha256="05w1w7fqvhf2xi2d0d5rzigv3sriwy5jxak7j8bvmbwnx31inv5k"; depends=[]; }; - AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.21.0"; sha256="1k1qzxakbavm10bd0ybs1gk97w1y825iqvwimn0cr128qw2xxkyj"; depends=[affy]; }; - AneuFinderData = derive2 { name="AneuFinderData"; version="1.9.0"; sha256="0m3pvsdd2y1947zl582791bsip95j41fc6g9gbin3cg51y7lb6xr"; depends=[]; }; - AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.11.0"; sha256="08r5430gqsmkbh4n49ac2fl0m24zmqjnc9yxppw5mr0d4n5l26y5"; depends=[]; }; - AssessORFData = derive2 { name="AssessORFData"; version="0.99.2"; sha256="0yi2vxzg21nkqlywcpv6n2vzksl77cvkc42ii9p7gy9kpv56553k"; depends=[DECIPHER]; }; - BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.19.1"; sha256="08c7aqnh4wnhnalrvchcyhy5vmxq5xkq26pmp9xjn2x4zwf4156y"; depends=[beadarray GEOquery limma]; }; - BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.1.4"; sha256="1hh1l134cmbcmyc40fwfrwrbx6qyiv9a3bz8hp9vbdf1vslhcnpk"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; - CCl4 = derive2 { name="CCl4"; version="1.19.0"; sha256="1j4q7mm4lwi3rcf0y6zj36xc6n7c8y6l8iv9ac4avbgvr1rvlxaq"; depends=[Biobase limma]; }; - CLL = derive2 { name="CLL"; version="1.21.0"; sha256="103lmn87zw73sx30ln6g4382ydpi97b1zsm7www8bwlnw6zx7k7g"; depends=[affy Biobase]; }; - CLLmethylation = derive2 { name="CLLmethylation"; version="1.1.1"; sha256="1vbvxb3bnwx4ngxkk6vrhshcfyrv0fvs3vhlqk0j9q1mhxg8p3a9"; depends=[ExperimentHub SummarizedExperiment]; }; - COHCAPanno = derive2 { name="COHCAPanno"; version="1.17.0"; sha256="199xz5qwp06kr3smr25vx2w25hmzf7qbpaw18aj7bvccsdsyvky9"; depends=[]; }; - CONFESSdata = derive2 { name="CONFESSdata"; version="1.9.0"; sha256="091ydgxqldrcr3b73pqyk6555yyclnnr4yizi0kknqasx33sb802"; depends=[]; }; - COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.17.0"; sha256="1pgfqrp6cx94marm96swqq8c9nr00xdmlf62hvmacqwspsajbnya"; depends=[]; }; - COSMIC_67 = derive2 { name="COSMIC.67"; version="1.17.0"; sha256="0qd0xbc8hy25hyy8bilim2w5inhwz88rypbqc8vjlg54r2yl12nh"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; - CRCL18 = derive2 { name="CRCL18"; version="1.1.0"; sha256="1hxh7fldfy2v9sii5clwi9i568dcc742nd4da0048p4pm87qxcsv"; depends=[Biobase]; }; - CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.13.0"; sha256="1rjp3ybc0yx8sjqp4ahadgymlld2l2hn3dxxvpng06qpp5jch0zq"; depends=[Cardinal]; }; - CellMapperData = derive2 { name="CellMapperData"; version="1.7.0"; sha256="0zjssdm2z7i6bcp781x9lz09dmh5krvvxg5a0la79dj5vvs72cjp"; depends=[CellMapper ExperimentHub]; }; - ChAMPdata = derive2 { name="ChAMPdata"; version="2.13.0"; sha256="1xa5lcxf7npb8mykqpx84vpjavl9xzwl24nlsaaw3gk75cfrhpkx"; depends=[BiocGenerics GenomicRanges]; }; - ChIC_data = derive2 { name="ChIC.data"; version="1.1.4"; sha256="0s8nm65kwk2cbs8g66zc46q31nd66fdm0kk0d6gxl6zhv0p3d8dv"; depends=[caret]; }; - ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.19.0"; sha256="1f32hzqgpiclby25223ksp63xlhdk7d52sf2xc97hpjig0571630"; depends=[bigmemory]; }; - ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.5.0"; sha256="0y2s4hw7hbfspy1hjsqkaw72pm26k911699k6sw4jhvjh7mkvjbf"; depends=[]; }; - ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.19.0"; sha256="1i2aj1vxak6b53mpcd36q2xwgpddllqpqz3wii7rrsa9mg2gaaza"; depends=[affy hexbin limma qvalue statmod]; }; - ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.17.0"; sha256="1zz0vq192jfnp494mp61xmkxyd94bbh9xs268jd7ynnlpjp9phsx"; depends=[]; }; - CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="0.99.14"; sha256="1lvdacdazpp071grc75gjxmhwjzkm22lhwzjvf6baclq9qfjgqp2"; depends=[ExperimentHub Rdpack]; }; - CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.13.1"; sha256="014jissvpkj2d0sz3r1dr5c5qs29hbvs9jvm8bl86mld8ff3nlkc"; depends=[]; }; - DAPARdata = derive2 { name="DAPARdata"; version="1.11.4"; sha256="06qwja8qkbix6ial81yv1q3bxrdmqrgridina094p1xrxbfrn5sb"; depends=[knitr MSnbase]; }; - DLBCL = derive2 { name="DLBCL"; version="1.21.0"; sha256="0advvjkd6skynjjnz4s9mdnh0l9l2zhn4n9x0kg23dmsg4r8vqm7"; depends=[Biobase]; }; - DMRcatedata = derive2 { name="DMRcatedata"; version="1.17.0"; sha256="1a669jjvkjjklbh2kxrv3y2clfps067w6w19y1yr2a8wc7crbl4a"; depends=[GenomicRanges]; }; - DREAM4 = derive2 { name="DREAM4"; version="1.17.0"; sha256="0s3y3wgg487p5fswbin4237mrm9kzbq12a84jiixhql1j2ysbhcs"; depends=[SummarizedExperiment]; }; - DeSousa2013 = derive2 { name="DeSousa2013"; version="1.17.2"; sha256="1xz1l83my34kwr4wk6vq3q5yzd3i0ky5qm44wx65f4d92hn7k3v5"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; - DmelSGI = derive2 { name="DmelSGI"; version="1.13.1"; sha256="0v25rb5myhki1vvmmzyhpa8n0vv623zj6lh26a10iq4i5bvda9c5"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; - DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.19.1"; sha256="1sbhq0m67v5swyafrn74cjz4h3r6d1qmn2skkz3xwjgm70qpbjrb"; depends=[EBImage]; }; - DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.17.0"; sha256="05xykgmiakw6n8f1b86wbyjzs9v6b7qz8119pwvbfjgncgwqmcx9"; depends=[]; }; - DuoClustering2018 = derive2 { name="DuoClustering2018"; version="0.99.2"; sha256="0f4ps36wd1yll9w4zkx6n4kz0svqfajmb11a5c51b55572siq203"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; - DvDdata = derive2 { name="DvDdata"; version="1.17.0"; sha256="0x5crrym68rw2r9nmb33j1n1f5rxpj5rzn8b5j403ikxywfwxblh"; depends=[]; }; - EGSEAdata = derive2 { name="EGSEAdata"; version="1.9.0"; sha256="1bmxm535h9ilnpbm196rf40543kh1yf5ldqxilhiyx5k0qaaihmz"; depends=[]; }; - ELMER_data = derive2 { name="ELMER.data"; version="2.5.5"; sha256="192jdmxl17m8s1r95c2lizh2r5zpazvx0az8xj22dva0mrazql9c"; depends=[GenomicRanges]; }; - EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.19.0"; sha256="0w3bcssqpbzgb03ld9j9jv57bvn8yfpkglhb4minbkqbhslv4j52"; depends=[GenomicRanges rtracklayer ShortRead]; }; - FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.17.0"; sha256="0iz0f467d2wh5cly3cf2y7kkrv8pwihsccf6zsdrqpq4a1ijiml7"; depends=[]; }; - FIs = derive2 { name="FIs"; version="1.9.0"; sha256="135r3vc8rdjrhl0a6s85052mzranlxd5jkiwxbymsjg6mglsjyvh"; depends=[]; }; - Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.17.0"; sha256="05kvsbr46yjpkdnn7rwxhj3wnlrgz92fgg35b8i781131vpy4lzh"; depends=[Biobase gplots limma VennDiagram]; }; - Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.17.0"; sha256="1rfsb49fcn127nzykwndzp7gapd36j3r01dvvhn87w6ryy9yc98c"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; - FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.19.0"; sha256="0ngh5zwikm83rzv9aykhxijf7nj345nnak2207jn4frdq8qahh3l"; depends=[minfi]; }; - FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="0.99.37"; sha256="1kfh6x69r3vc7v3in1q1n8frbsha5z8gmds7dcgy39wvry16c6lm"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; }; - FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.9.0"; sha256="1ib9g4zy3zwk7m6hl9ggi030qwrjch9jnip6d7a4b27cjzlf0sdq"; depends=[minfi]; }; - FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.7.0"; sha256="04i701nl8w8sdc85z1y8gzg076n3znnd9fkp35a7pq7sczkfih90"; depends=[minfi]; }; - FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.17.0"; sha256="1d9xq8ha0p1injk8l16vggfkzk7xlsgaqb227gvl6xc49q8dmh5m"; depends=[minfi]; }; - FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.17.0"; sha256="1vp55zd2ifamxm248jskvf2y29cgjyx98jw41h2pbly31qxq4h49"; depends=[IRanges rtracklayer]; }; - GGdata = derive2 { name="GGdata"; version="1.19.0"; sha256="0mr6l11bgg8ncga9ivwdps6jp6zbcjs5jxvcpf834qaj92h63mrg"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; }; - GIGSEAdata = derive2 { name="GIGSEAdata"; version="0.99.11"; sha256="1rn6dmji5ja1p83gai18bcmdc9vi0fm4pq4yk7wdsbv6p334cqlq"; depends=[]; }; - GSBenchMark = derive2 { name="GSBenchMark"; version="1.1.0"; sha256="1a9hlgcz9m36gzkmxkq4i308hsm617hmsxmwq09yd5cxq8dl80g4"; depends=[]; }; - GSE62944 = derive2 { name="GSE62944"; version="1.9.0"; sha256="1s28rkr5nm91vnl6cx0gifib4nw70gs8bhmv003f9kbpiq420i8k"; depends=[Biobase GEOquery]; }; - GSVAdata = derive2 { name="GSVAdata"; version="1.17.0"; sha256="1gjc9psmx0i25bwki6l74d8jg3mrvfzjdnxs5bhbqnzab6fzdfh0"; depends=[Biobase GSEABase hgu95a_db]; }; - GWASdata = derive2 { name="GWASdata"; version="1.19.0"; sha256="0i09njrq0fzwvzj6lqsa7kdnwi35lm7z0akywh0mr87i6dlqj8sq"; depends=[GWASTools]; }; - GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.9.0"; sha256="1h6ghr75h1i87lbarsganiw6mgjyiha4zv4hbjdjljc464s11b0d"; depends=[]; }; - HD2013SGI = derive2 { name="HD2013SGI"; version="1.21.1"; sha256="1m3q08m21vim5j520wgiwszrp6nnkrsfqf6wac8cyzw1qs3cp1s6"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; - HDCytoData = derive2 { name="HDCytoData"; version="1.1.2"; sha256="1ay7r0aya0b6rxwscg3lwzlgl9iaj9ykii52lmzpxx40yc6szpnv"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; - HEEBOdata = derive2 { name="HEEBOdata"; version="1.19.0"; sha256="1z8qb5xrzadg6fxg8cx04dpad3qiab5m8vhgdqw4xs8xdaqd4g1m"; depends=[]; }; - HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.21.0"; sha256="0pgb0r6zp6v0wq16c5zjxzjjwb6cjjp3cn8jnh4p91rwf43za4rh"; depends=[]; }; - HMP16SData = derive2 { name="HMP16SData"; version="1.1.4"; sha256="0qjqf7ipczv3rs4r4l5ynagi46ksb98b8mylgvbclrqp7ny2wcbq"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors SummarizedExperiment tibble]; }; - HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.1.0"; sha256="0fl3r3sdnnn3s9h5sn0bmgpi0hj965cwgca51qkwcvll4rjamyq2"; depends=[]; }; - HarmanData = derive2 { name="HarmanData"; version="1.9.0"; sha256="1c6avjny0fasj99q0a2dm8p3h68jalcglx51b90fnyjgvqgx3h2g"; depends=[]; }; - HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.3.0"; sha256="07fvdf6kzipa42r5dmmld7p2chbi074d248da0xmlm8lm1i0wkc9"; depends=[ExperimentHub]; }; - HelloRangesData = derive2 { name="HelloRangesData"; version="1.7.0"; sha256="05yr2mklxwfij6yzmhpk83mlrq7zfcn8finf2m4lrvdbdzl1bkki"; depends=[]; }; - HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.1.0"; sha256="0nmd7iqa6cg74xvz1a2x9ahyzs3kwd4fnhz5nkh62sgndj1pv62l"; depends=[]; }; - HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.17.0"; sha256="0hjhlq7vx71lwv37vidwlb819hm617dx7g39hgf20ggccmp310rh"; depends=[]; }; - Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.17.0"; sha256="17mnwnpsam62mc8bqdwjfh9fiayasbkx1gd3bbp0k82w3az9yzbf"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; - HumanAffyData = derive2 { name="HumanAffyData"; version="1.7.0"; sha256="02hp2a7h0ivzdfql3vsrvxrn4answlr7hrhw5azdjw8jh895dd1j"; depends=[Biobase ExperimentHub]; }; - IHWpaper = derive2 { name="IHWpaper"; version="1.9.6"; sha256="19fg4ca9hhlh4as0nyd3qkkgqphghgvlcs57279pl42nphzz1hw0"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; - ITALICSData = derive2 { name="ITALICSData"; version="2.19.0"; sha256="0i09g3dj3rz0yr4n35g9fhc5df957i928vbinsx2bl3jsj7xrf6f"; depends=[]; }; - Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.17.0"; sha256="1y219yqipskv3mzf7g75rmzwsp5sq2r9cqacbpyc2gk28z6dfnix"; depends=[]; }; - IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.19.0"; sha256="0b6zhvkhpjhz9wr3cfcvyy16l1kvd6aq9p58y78ql9rgpbhz7dcz"; depends=[]; }; - Iyer517 = derive2 { name="Iyer517"; version="1.23.0"; sha256="0986lrh1w5c1y3rlc0rx06046h0nw8cdqp1mbsddllpibnbj4ii3"; depends=[Biobase]; }; - JASPAR2014 = derive2 { name="JASPAR2014"; version="1.17.0"; sha256="13hrxj4q2r9bdzwnl0qm5ap92051483876rwq73bz6hy5xg73abx"; depends=[Biostrings]; }; - JASPAR2016 = derive2 { name="JASPAR2016"; version="1.9.0"; sha256="1gx14sjv9v5705h1763p5js37jrvvlkiqdm7nrawjs4n6y4cpsdf"; depends=[]; }; - JctSeqData = derive2 { name="JctSeqData"; version="1.11.0"; sha256="1zrnmvs1mmg07s5fi8m5yqb975kb1nkx98j0shpk9xi5jdbf7x0d"; depends=[]; }; - KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.1.0"; sha256="1d4qg0svrmfc6v7dhgxbsn0xfhyplizfh113n26z64y97nfhc21p"; depends=[Biobase BiocGenerics]; }; - KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.19.0"; sha256="0w2a3yjp5xhbxq0vhzyka8sx17a095ddnpm4jhac65s6zmndgqr3"; depends=[Biobase BiocGenerics]; }; - KOdata = derive2 { name="KOdata"; version="1.7.0"; sha256="0grvn2pc38zv133v60hvjh1jx9dsbrwxrz9c6fb977z1rznrkzz8"; depends=[]; }; - LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.19.0"; sha256="1i6rl8mziv8apxxa2hlmsg6ramq4aasbg9nxj963lsk9b6gnrzlf"; depends=[IRanges KernSmooth]; }; - ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.13.0"; sha256="1p3f67zdihy5prbgqm27bdpnz3gmag3jnya0y7gxaqn3lkdd1vns"; depends=[methylPipe]; }; - LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.17.0"; sha256="0rgbx36c4hdjc67jsmhrbzyhk3ib8vgmif2g131rly2057zs43f2"; depends=[]; }; - LungCancerLines = derive2 { name="LungCancerLines"; version="0.19.0"; sha256="11yycm8l0ykkb22h9rppaqrkvyyphz7q8k5zgha06c4h0lcf9zqi"; depends=[Rsamtools]; }; - M3DExampleData = derive2 { name="M3DExampleData"; version="1.7.0"; sha256="0iaaxz3k7kw2qfaq5c7nx8jbyy4lg3csvsgnci7aknm4iqdgzc7v"; depends=[]; }; - MAQCsubset = derive2 { name="MAQCsubset"; version="1.19.0"; sha256="1c9gng9mr56h0pqc6xsr489d8m6xixg1iyw6ivdjdm38yg9l5q8h"; depends=[affy Biobase lumi]; }; - MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.19.0"; sha256="1901vmaq8k8ip508w3s37bdvrhzbd1f36zgz4z7i2f93464yh188"; depends=[affy Biobase]; }; - MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.19.0"; sha256="1qknpl7k22rbn3v5m4jqs0xiiw2n8wz32qbqsdy13300ynwlvvkn"; depends=[Biobase lumi]; }; - MEDIPSData = derive2 { name="MEDIPSData"; version="1.17.0"; sha256="0pazyx7xsvxsv36yhhxjbiyfdmd19ifrbbbfj685hgdx0mpiz8qa"; depends=[]; }; - MEEBOdata = derive2 { name="MEEBOdata"; version="1.19.0"; sha256="1naapb5mskfr482lfs5z1ya2bbsz3jwcpm3mm15dhrxl7rrd7z98"; depends=[]; }; - MIGSAdata = derive2 { name="MIGSAdata"; version="1.5.0"; sha256="15v3gva9xprr24fv3p49lvwgnh56g9x3nj2qqdd410i1avwn6j8n"; depends=[]; }; - MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.17.0"; sha256="1bjkdyf0knkdbzdmlas81dhnm5k7yslq6km3yzffrvn1kssml47i"; depends=[]; }; - MSBdata = derive2 { name="MSBdata"; version="0.99.1"; sha256="1bgzzrynb4066xps7wagawb2pjd64qab7n9il2znsidfprm03bxj"; depends=[]; }; - MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.3.0"; sha256="10i3gg9fbhcj6fz4fz1jzmqmabdf9c39ys8yp40qs60glv9gj3qa"; depends=[]; }; - MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.1.0"; sha256="18y2ljddzk0g7cn5v8cpc151mrdfzhvj0ah4c988lmc6xlqcyjsv"; depends=[]; }; - MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.1.1"; sha256="1lzqv8alxccmfp6s4ylyam9ljwga9p9q5ndnhsljnfiyw820md78"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; }; - MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.1.1"; sha256="1djqlmms5a24g8n6mimp4fib3h6qd17p1cl9anzmvl3zscz23p8y"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; }; - MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.1.1"; sha256="17vjfnlxrkmdxifmbpfq81zqzzpdhkm5s1aagcnrhgzkv9prszms"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; }; - MethylAidData = derive2 { name="MethylAidData"; version="1.13.0"; sha256="157qvzvw8hhw25qnzv7xax3vzmq38bw4fp0k34jfwgq944srv0h5"; depends=[MethylAid]; }; - Mulder2012 = derive2 { name="Mulder2012"; version="0.21.1"; sha256="1ypxdys24g8k98jd50sldqggy28fmjy1cq7gc3pxa10rww6g9h57"; depends=[HTSanalyzeR igraph KEGG_db MASS org_Hs_eg_db PANR pvclust RedeR]; }; - NCIgraphData = derive2 { name="NCIgraphData"; version="1.17.0"; sha256="090s04iwbnhdbgprcy15hl596vmgq8x97v34w2xvmsdld5b8z58d"; depends=[]; }; - NGScopyData = derive2 { name="NGScopyData"; version="1.1.0"; sha256="13dlsznbg3kk7pi0gdzwnh9i3qdk538qh4rnjbpxr6iw61hwl0zd"; depends=[]; }; - Neve2006 = derive2 { name="Neve2006"; version="0.19.0"; sha256="0fn77ic133wfdjrnh5vdk95rwx51nigfmznb7i94n8h5hddmpnbc"; depends=[annotate Biobase hgu133a_db]; }; - OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="0.99.11"; sha256="1w38ii5wsaiar4lbn5428pyinzg07zvw4c7fac6a3nx70mhpnxn5"; depends=[MultiAssayExperiment]; }; - OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.3.0"; sha256="0ih472qrzx183pyk0k8agwybn5bycx3hx1j2amjkp42p7hml4iqj"; depends=[rJava]; }; - PCHiCdata = derive2 { name="PCHiCdata"; version="1.9.0"; sha256="19cmbyhsi84pi89fy623f7r5yld7qifnqfpvwcb3n7ads5idq1qm"; depends=[Chicago]; }; - PGPC = derive2 { name="PGPC"; version="1.9.0"; sha256="10z8r98lp92dh14wpf2hs5n3jzw9y3dw6mf5ssx469368hhaypma"; depends=[ChemmineR EBImage geneplotter ggplot2 gplots imageHTS limma plyr RColorBrewer reshape2 SearchTrees splots]; }; - PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.21.0"; sha256="1h7x57vvplxbmsxwalgnkbxwnl91qnfyrn1j6cwyak9pzh58aqh0"; depends=[affy annotate Biobase PREDA]; }; - PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.15.0"; sha256="1gq65gl4dkas9nl3k31k7xjwdry5c2bgj841w1llbb48wy9w06d8"; depends=[PWMEnrich]; }; - PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.15.0"; sha256="1ryrrw0fdi7bmw8h7pdi02yq9y39dkl0vppyf4ycasnbyn14ddrv"; depends=[PWMEnrich]; }; - PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.15.0"; sha256="1py3rsnd4s9x7r2mhzsp7hqaflg3ip2fgq3cf10f136fdrfcbf1k"; depends=[PWMEnrich]; }; - PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.9.0"; sha256="1lkqz0kp1jfsi1bvkqhvlqapp658qfm7b1p9kiwk9qakfl0nm7x6"; depends=[]; }; - PathNetData = derive2 { name="PathNetData"; version="1.17.0"; sha256="02wdp23y583p9sinhaqkv6lxp836m6kh7na8b2wv6qajanibzhl1"; depends=[]; }; - ProData = derive2 { name="ProData"; version="1.19.0"; sha256="0idv9icfzr52k96gij5mlyqyd48mjwka7jg1nhawiaj7g4c005yc"; depends=[Biobase]; }; - PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.7.1"; sha256="1ypwwrk643shfng4nqs7jpy25058ni2fqq4jhx2yc1j73bx8k834"; depends=[CAMERA LOBSTAHS xcms]; }; - QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.11.0"; sha256="134mzg2r3bpzcpag5vf2fq8g0xczb5qxyvqqcjzqw654mbafgczr"; depends=[QDNAseq]; }; - QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.11.0"; sha256="1j5qzwbc7a9h9hlda6c6f53pm6vqm4kdja4z144j4snyac88xclm"; depends=[QDNAseq]; }; - QUBICdata = derive2 { name="QUBICdata"; version="1.9.0"; sha256="1r1wcmd7s17gm5q682siy8ld65w6ylch9jamqjlbp8qiqqvfmzdd"; depends=[]; }; - RGMQLlib = derive2 { name="RGMQLlib"; version="1.1.0"; sha256="0ijyjgqnap1zmfh6jf4gz9xjiwyzzhyyghvydh6rwkyys46ci8zl"; depends=[]; }; - RIPSeekerData = derive2 { name="RIPSeekerData"; version="1.17.0"; sha256="11hrk3cf86jgc7vf14wlyarar2vsnjs0i9wyzvmk76draq9frg30"; depends=[RIPSeeker]; }; - RITANdata = derive2 { name="RITANdata"; version="1.5.0"; sha256="0yn8nfvni9h4k9ngzccsqgbjrjvql5gp3haqyg9x334sjsi212c8"; depends=[]; }; - RMassBankData = derive2 { name="RMassBankData"; version="1.19.0"; sha256="172x6x7fnzjczi76ibmscbb51l8185lqgiypyyvlisp145mxssdn"; depends=[]; }; - RNASeqRData = derive2 { name="RNASeqRData"; version="0.99.8"; sha256="0mfgfmbngx87h9ymbqcdabla5rb26p1kh4rvp3g307rp3hraivcp"; depends=[]; }; - RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.19.1"; sha256="1c90s1vjp4w065zldlzrn64qakwnhfg3s6w3ddmx6hynbrc8lk8j"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; }; - RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.19.0"; sha256="0z1b986jvinzh3c1yl9q8wa66wgq8hp8rjbs23glxna77znvkp87"; depends=[]; }; - RRBSdata = derive2 { name="RRBSdata"; version="1.1.0"; sha256="18xm228jlpvv5z5r5k3nyjnnmizsyg5lkml4kdrkw8mv7gljgcyb"; depends=[BiSeq]; }; - RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.9.2"; sha256="19lwjkzs0wrvrgm5a81wq2qcqv2xa1irfnqbv6yrx9c3g3sk6zqi"; depends=[RTCGA]; }; - RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.9.2"; sha256="1ain3wscy6n1jjcb8wajpn9h7flhppih01mjjv6y3dxyyiqqchim"; depends=[RTCGA]; }; - RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.9.2"; sha256="0fisrp4mgl035lcwg4pj1zcrmfafsc0kgc6788h9nx9b1vh6s7w9"; depends=[RTCGA]; }; - RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.11.0"; sha256="1y63vnj59sv73zcrnwqd4ikdjx45y9sqb2pj1lnsrhvfbmjazi5z"; depends=[RTCGA]; }; - RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.9.2"; sha256="1bb9b83y3f9012gnr19c2wacj1fkqvbqnymdv3qyc2pn6qhzid93"; depends=[RTCGA]; }; - RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.9.2"; sha256="1a97cdwm7rn9mipw3v904r4j4ay6p26rv3f8lx2znhz5hg44gnaq"; depends=[RTCGA]; }; - RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.9.2"; sha256="1lkywq2nvpil8wi8nv73hfxs3hsi71d85n9if7ra4c6ib3frwiwb"; depends=[RTCGA]; }; - RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.11.0"; sha256="1wyiz22rw400hiqqnw41mqpvy8bbj1vxwx3v4vnz6x81drv2sc1n"; depends=[RTCGA]; }; - RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.11.0"; sha256="0z2k651pd0m9lxl3n62xf41xhk65n33cgf7d5zfwd03hbc07d0gq"; depends=[RTCGA]; }; - RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.1.0"; sha256="002q9rc6d0cr6gip9irlafi67ds4jlvxfnil2if30aw4h6l4apkn"; depends=[Biobase]; }; - RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.1.1"; sha256="08p1r5vpz92i7nmgdjsp0i5wzypb46lsdnlykci21nzf9ip12mc9"; depends=[data_table]; }; - RegParallel = derive2 { name="RegParallel"; version="0.99.9"; sha256="0n0qyiz2bqw5wi35f8rszrx668dl6hqw054lqakb2dpfpjlzz57y"; depends=[arm data_table doParallel foreach iterators MASS stringr survival]; }; - RforProteomics = derive2 { name="RforProteomics"; version="1.19.4"; sha256="1mm1cfsazajkhaim4grz2zi7ar4x2ljn5vq4rlv20gra3d4b82ca"; depends=[BiocManager biocViews MSnbase R_utils shiny]; }; - RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.13.1"; sha256="1l3za4hbrg38p9sh38qsj17hgg03cbgqga4zg0c4lcipifrpbbfj"; depends=[GenomicRanges]; }; - RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.13.0"; sha256="1wyy4m3p40i12hlwvz9ixqps8i4d5703gl0pcgl4i2485d78yv9v"; depends=[GenomicRanges]; }; - RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.13.0"; sha256="1kjvy1v0dbdm959cmsf2d5mnrbnisjpff12wl5gn44n2cg7bb65g"; depends=[GenomicRanges]; }; - RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.13.0"; sha256="1s1iy8x1x53ny1pyfgwwkiwc3jpjhdkcd9vpwyv2ix5g22jf8ag7"; depends=[GenomicRanges]; }; - RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.13.0"; sha256="1pp9y94rdk5wwapc4jbvs35x1z2agv4xvzxy3fl3h7hp22gaqr9p"; depends=[GenomicRanges]; }; - RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.13.1"; sha256="1cqannbgpr0s9qr1cx4d23rwjy6k63x25khdr7qx5939chz0r21a"; depends=[edgeR]; }; - SCLCBam = derive2 { name="SCLCBam"; version="1.13.1"; sha256="1b6da5i20w7w08jv3s2xdpp71qf7y1nxyv3qj3fz5jkw2aavds5f"; depends=[]; }; - SNAData = derive2 { name="SNAData"; version="1.27.0"; sha256="182pramjd14g1p0aawcjrv51xlyqkp9mhm84v3gnd9gnmkb69b31"; depends=[graph]; }; - SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.17.0"; sha256="15l23gw5ckxgr6pscl07jqwb1lz58g5893wnlzz4zpk3sd46d2p6"; depends=[]; }; - SNPhoodData = derive2 { name="SNPhoodData"; version="1.11.0"; sha256="1zm0zhf2987hls15b47jv6krn1cc8kp6jm64k4wqhp4dsjxwbaqd"; depends=[]; }; - SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.13.0"; sha256="0qhkhnxrcy5i7cs4cl5axc8y9dbzhzfl00c17qp9r4bf8292xf1d"; depends=[]; }; - Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.9.0"; sha256="1xnsilyjls3s048kl1jwqcs6sb4r33khga0z2zipsgk6aqnx81cc"; depends=[]; }; - SomatiCAData = derive2 { name="SomatiCAData"; version="1.19.0"; sha256="0aj84aljp7ih849qnyhmsibnsvg7cshj7xah67xhn5grzwk7v9hi"; depends=[]; }; - SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.17.0"; sha256="0bprp4cddjf9zlhv38q5y08zrzizqaxj4338wbzjq1ypnjyip2qj"; depends=[exomeCopy GenomicRanges IRanges S4Vectors stringr]; }; - SpikeIn = derive2 { name="SpikeIn"; version="1.23.0"; sha256="1yjlljcy1wnxkxrcxaw26f96vkyvhqh9zq52l9s8d7gnrsfj44ak"; depends=[affy]; }; - SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.21.0"; sha256="1z6fbq2z2ry2v3sv48n20c07bi96gb1nfg81g5ylh4q7w79g8lvf"; depends=[affy Biobase]; }; - TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.17.0"; sha256="15521vpi6h1ydl8vw43h0plrgy7baj5bprzg8rs50yxgkphh9nns"; depends=[Rsamtools xtable]; }; - TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.17.0"; sha256="090y4vyipnlxxg78yxva7q5y81gawfpmkgjrsqiqr1smfalvx9yw"; depends=[]; }; - TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.5.0"; sha256="0kbab7fjy7waq5r6k2w0c8x811xd62v39p17acd5gk8gbw9gy919"; depends=[SummarizedExperiment]; }; - TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.1.1"; sha256="0lg2xmf9crcd3328sikjynicrapm32ffq8ay9p0r484rx0m5yvbp"; depends=[]; }; - TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.1.0"; sha256="160gj5q4n08l3llfqd0iim2054v8jd3a2pvvd7454amangnrrjd1"; depends=[Biobase]; }; - TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.1.0"; sha256="1njy5ab0a8p97gi8ci0bad1byl5k42a5shjrss8z9k3a0n9jzpxm"; depends=[Biobase]; }; - TENxBrainData = derive2 { name="TENxBrainData"; version="1.1.2"; sha256="1m4cajmp1h5mahlxbvyfvslqq3yfbcy8k46m5p0b73phvnw44846"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TENxPBMCData = derive2 { name="TENxPBMCData"; version="0.99.3"; sha256="00xjm8xr5f1dzghmr6p3mcjcir6a81gd99kgzznj5k90assggr45"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TabulaMurisData = derive2 { name="TabulaMurisData"; version="0.99.2"; sha256="185y3cxdkgj4gl4ai0nc0684nz357qscfsah559wdvvvqny25dmk"; depends=[ExperimentHub]; }; - TargetScoreData = derive2 { name="TargetScoreData"; version="1.17.0"; sha256="12bmw3qmkw9blmr5ikgx0qyfv1x6hda8d41fiy8gsb74fa4nifsv"; depends=[]; }; - TargetSearchData = derive2 { name="TargetSearchData"; version="1.19.1"; sha256="1hwfqsz1rivqq14x5z9d8nphxajfxhm70mgbi0pjzlzsravg487w"; depends=[]; }; - TimerQuant = derive2 { name="TimerQuant"; version="1.11.0"; sha256="1a49jaxgjhwl756a7wijswa90z03fz61ffp6w5h00v9qfzgnyf79"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; - VariantToolsData = derive2 { name="VariantToolsData"; version="1.5.0"; sha256="1kkz3zvba4mc237pxwj6z0c2jvbrgfaz3n5vm55bz6j47aas3i4j"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; - WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.13.0"; sha256="0f3llqwkc5d4av47871d45lfqghmncww9g5rgf58pydrnw7n93xv"; depends=[]; }; - XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.19.0"; sha256="1kac43fvng1pwa8hlbivd8pxan7agp9csp0nmh062x4kwamny3hm"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; - affycompData = derive2 { name="affycompData"; version="1.19.0"; sha256="14ss2b854dj36rzhx1z854r5hkxy0yqzlm5k0690gn5bwlah6rk6"; depends=[affycomp Biobase]; }; - affydata = derive2 { name="affydata"; version="1.29.0"; sha256="0sv5q59xfvlyk97ihki5sqdzy9nldjccxiscx3ii1xpp4xk44i3c"; depends=[affy]; }; - airway = derive2 { name="airway"; version="1.1.0"; sha256="0daywdjalqbqx6gxrg4fwiasa62h9jh8ibg9kh0vrd35mdazh7b4"; depends=[SummarizedExperiment]; }; - allenpvc = derive2 { name="allenpvc"; version="0.99.2"; sha256="04f6y2zk7c8prk22yl15qp9xf81dickn2ida8b5jdhzby6a4p1d1"; depends=[AnnotationHub ExperimentHub SingleCellExperiment]; }; - alpineData = derive2 { name="alpineData"; version="1.7.1"; sha256="1gdj474nc2s92i2m1f02ganr5vsv93315mk3dqdyyk05xr9banbw"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; - antiProfilesData = derive2 { name="antiProfilesData"; version="1.17.0"; sha256="0wyjfc02wm5x5d61fs6cs7g3s0j4aibpqkdiwx0d8cbbkl38ih3f"; depends=[Biobase]; }; - aracne_networks = derive2 { name="aracne.networks"; version="1.7.0"; sha256="1acngnqvg7vl402yfcw65rqs27a7sncl1xfz2893abfli2ccpbzx"; depends=[viper]; }; - bcellViper = derive2 { name="bcellViper"; version="1.17.0"; sha256="0rzzj4pla57z9825jcs2kx177xrcqfnh7jai41m8dwfxln6ccz25"; depends=[Biobase]; }; - beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.19.0"; sha256="13g7p6jrg9qa43zv8nhkgfz2pq7b3v6chgqmydyyz25q6jy28iqp"; depends=[beadarray Biobase]; }; - beta7 = derive2 { name="beta7"; version="1.19.0"; sha256="1gd1l8rh73k27sm1cjfy9rmsplrkji3zhzrzcldjmaaixl5nfjql"; depends=[marray]; }; - biotmleData = derive2 { name="biotmleData"; version="1.5.0"; sha256="0ccx398761qdnnsrjwrrg6qjrq01fv88999f2llyq9gpd3f43lgs"; depends=[]; }; - bladderbatch = derive2 { name="bladderbatch"; version="1.19.0"; sha256="0n9vwbj8cii67rhxvb1ps72k99rv251zcdr4w3r1jkbvcd61nvh0"; depends=[Biobase]; }; - blimaTestingData = derive2 { name="blimaTestingData"; version="1.1.0"; sha256="0r51zz7kh16zgadr2vzgrm5fywfs03mk2jk5qywb27agqbw5y40s"; depends=[]; }; - brainImageRdata = derive2 { name="brainImageRdata"; version="0.99.6"; sha256="0wbj8y1qskc23gqdwc815racv7kqplmh1v12y5y094fcgs6cq62p"; depends=[ExperimentHub]; }; - breakpointRdata = derive2 { name="breakpointRdata"; version="0.99.2"; sha256="13mfnd2ms1fnk6zmyz8l10qw8xhfmb8qjyc2r7hn1qmap6ld578f"; depends=[]; }; - breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.19.0"; sha256="0pn48n81vx2wq425q5wnga6n32apgajk0bwq78ri983plh7ik2b1"; depends=[]; }; - breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.19.0"; sha256="0b6z16m6kqkd8rfrdvjp6p4fbqs78s25fbiswnw0k8jzvz5yw5x7"; depends=[]; }; - breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.19.0"; sha256="0slagz3x2q1qykvjcfnh7k3ggpn2g34j4iqvnv7j3mdcc085hn1d"; depends=[]; }; - breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.19.0"; sha256="0470r0i59phz2rcnmi0sb2hvw87nvm5dq6s4dj6s6z5mn85g8hd4"; depends=[]; }; - breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.19.0"; sha256="0qgz0dsds0xd8d6assqd0715zfyk2y92251m3zq108ndqh5gn4bm"; depends=[]; }; - breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.19.0"; sha256="0ma62g72md7is365pbnqbdskacxqvvcnc65jzv8b7g1dwvayswp6"; depends=[]; }; - brgedata = derive2 { name="brgedata"; version="1.3.0"; sha256="0w9h12ns984h6k5zhz2x9ria4fa1wxp3k04f6qg5k1zw20v4q2d6"; depends=[Biobase SummarizedExperiment]; }; - bronchialIL13 = derive2 { name="bronchialIL13"; version="1.19.0"; sha256="1jg9jz03ab3fki6g293c0jclk8cfpj9qb6yzzskdpcz99xmhs2xv"; depends=[affy]; }; - bsseqData = derive2 { name="bsseqData"; version="0.19.1"; sha256="0gqwyx0l0xmd2aa46shq4kr11nfi1imj2pwfjc9026r47af5b84h"; depends=[bsseq]; }; - cMap2data = derive2 { name="cMap2data"; version="1.17.0"; sha256="11973w3gjz0qayxacx41mlbf4ji345js8jgjkn2aba0ahnyzb6vw"; depends=[]; }; - cancerdata = derive2 { name="cancerdata"; version="1.19.0"; sha256="02zi60lh6jsg6hlyyq6wzg9lzxjr8m9418kywlk3x3c6kkgkrh69"; depends=[Biobase]; }; - ccTutorial = derive2 { name="ccTutorial"; version="1.19.3"; sha256="1bghwfpdm2xzh6w1z2pinv9wxy3f5vx8aabyl5vj9smfmplgcmxx"; depends=[affy Biobase Ringo topGO]; }; - ccdata = derive2 { name="ccdata"; version="1.7.0"; sha256="1vdsldxl1xnjdi9ai346a1zx9jp6kw33884vwwy86xmj7799j3y1"; depends=[]; }; - celarefData = derive2 { name="celarefData"; version="0.99.0"; sha256="118rdgkz4vlhk5n5c683sl28xsjqds6m08w3nfsw8z7ki6kng9sx"; depends=[]; }; - ceu1kg = derive2 { name="ceu1kg"; version="0.19.0"; sha256="0vs60mflfc1pnc7s725wsyq2jrj44jrvxwzpw4bhlj0qbs602s8l"; depends=[Biobase GGBase GGtools]; }; - ceu1kgv = derive2 { name="ceu1kgv"; version="0.23.0"; sha256="10jnbc8y386racq3ac1hf1dp76wvzlfm8p66c94pk3f2m0w45psv"; depends=[Biobase GGBase]; }; - ceuhm3 = derive2 { name="ceuhm3"; version="0.19.0"; sha256="1qdp85ps5xrlx1pl769j91aig2rgxcix4pdzrsa249nyyq1avdym"; depends=[Biobase GGBase GGtools]; }; - cgdv17 = derive2 { name="cgdv17"; version="0.19.0"; sha256="1n67nx1har6mswv5p2cb1xfrawkkhzrzxy7fpc6091yy3ypw1s5w"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors VariantAnnotation]; }; - charmData = derive2 { name="charmData"; version="1.17.0"; sha256="0hgac6z9k3frw648479jf8m6n2wlljhln7n8y13lbsdv5wakln87"; depends=[charm pd_charm_hg18_example]; }; - chipenrich_data = derive2 { name="chipenrich.data"; version="2.5.0"; sha256="0j9zdc0xrxi7vjyl3dzkvr8g24cxc1kcvw52vplrd5njyyka5vw1"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; - chromstaRData = derive2 { name="chromstaRData"; version="1.7.0"; sha256="0arxcqr1yrs00i7a8xncprixzm8lc8ljrbh371ckjdr7641g63gq"; depends=[]; }; - cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.17.0"; sha256="1inxvj6sfl7n3cxzswkllbjbjwz0rm803hkycy4wxcsq7416sj21"; depends=[cnvGSA]; }; - colonCA = derive2 { name="colonCA"; version="1.23.0"; sha256="1mm0zb003izia6j502n4m91vad6iz3ymf8nn4f9wlj20di66fvx6"; depends=[Biobase]; }; - curatedBladderData = derive2 { name="curatedBladderData"; version="1.17.0"; sha256="14xwq55g83pvwyxm7kl6hq9c4j2bd6vp63afir619d5binl6i7ln"; depends=[affy]; }; - curatedBreastData = derive2 { name="curatedBreastData"; version="2.9.0"; sha256="024sx3am50vsaaixmj8gfp3f905rf7g7qyn47sdakpv6sx48k1zl"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; - curatedCRCData = derive2 { name="curatedCRCData"; version="2.13.0"; sha256="1f6m6sllbxzca27lwyvav2d4si65w7fs9mh4mksw2sn8n8x5452v"; depends=[BiocGenerics nlme]; }; - curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="1.11.5"; sha256="1rcznh6h7vrwicf545jfxabrjwqf1npxqpp6hdfnf5bylkfrc1d9"; depends=[AnnotationHub Biobase dplyr ExperimentHub magrittr S4Vectors tidyr]; }; - curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.19.0"; sha256="0yvc1kpy4ql2sd467dggi6kpwxrvvqyasr0mgc61s1snmakvm06y"; depends=[affy BiocGenerics]; }; - curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.3.5"; sha256="01m4kld5cp0ff5wlwk2wln15vyjxgahzbk3xkzlg81yvs67ai2vr"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment S4Vectors]; }; - davidTiling = derive2 { name="davidTiling"; version="1.21.0"; sha256="18ivz1z0il8s9sk6c5mzgipsbs8xswbq7swwm422ji1yp75lkd9p"; depends=[Biobase GO_db tilingArray]; }; - derfinderData = derive2 { name="derfinderData"; version="1.99.0"; sha256="1dv6j91c9xs19pynza54gs127qqf5xk66rwin6rby0dcv58ng6s4"; depends=[]; }; - diffloopdata = derive2 { name="diffloopdata"; version="1.9.0"; sha256="12a5338djyhg94q7wdahij4c9dnrx5qx04a1g9304wpk5z6cmxni"; depends=[]; }; - diggitdata = derive2 { name="diggitdata"; version="1.13.0"; sha256="09b1mk68mg3jqf63c54xdh805vd79hbnnh02rf6qb3pq6w9b6z64"; depends=[Biobase viper]; }; - dressCheck = derive2 { name="dressCheck"; version="0.19.0"; sha256="0k3h5i86345xx0d31qim1d1aw25axwy48hiq717fbnz2mpwsggj7"; depends=[Biobase]; }; - dsQTL = derive2 { name="dsQTL"; version="0.19.0"; sha256="0lwgnkvzpipqnzfh3vlqgk568ys1bqjyfih97c7vb8mn57i100fz"; depends=[Biobase GGBase SummarizedExperiment]; }; - dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.21.0"; sha256="0k99wgjm4a7mjs76p48mwfp2y17xn4r2bral2c1hbyj2y4bl1ycz"; depends=[GEOquery marray]; }; - ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.21.0"; sha256="1pbindvfhr7lf01r0kncp23f6jxlwmkd362mix2gw2g006a83y4f"; depends=[affy ecolicdf]; }; - estrogen = derive2 { name="estrogen"; version="1.27.0"; sha256="1m0q2k6p6ydp7ykqwi9a079knxmp14xlrpcwncklsapibcvyz8lr"; depends=[]; }; - etec16s = derive2 { name="etec16s"; version="1.9.0"; sha256="0ljn90gf4sm7615xw25dil15kgf81gl0hvbp24snx4nbflnhns4q"; depends=[Biobase metagenomeSeq]; }; - faahKO = derive2 { name="faahKO"; version="1.21.0"; sha256="19dxcf3yfgy8h8xn76h7x2ihvgy90923a28j3b2k972r84zzy7gk"; depends=[xcms]; }; - fabiaData = derive2 { name="fabiaData"; version="1.19.0"; sha256="104c70pp9cnkx3y2mm6yxj4vj6k2mqrhw1n2cibhxnnqnl2lnwnr"; depends=[Biobase]; }; - facopy_annot = derive2 { name="facopy.annot"; version="1.1.0"; sha256="0snc9v8jy3dnxidk7g9lppxcp35flgdgp132sap8qkh6d1qc2rwd"; depends=[]; }; - facsDorit = derive2 { name="facsDorit"; version="1.23.0"; sha256="0xxdz1xfb661pnrqji6vxsmmr90h1v1i195k9gb4dll6hwbq0n11"; depends=[prada]; }; - ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.19.0"; sha256="0jjaj492k4akc30yvr4q8y31wdi152iq5s3pl5i10sl9xrbg80hj"; depends=[lumi]; }; - fibroEset = derive2 { name="fibroEset"; version="1.23.0"; sha256="1g22av8zj4nq9prnps7zgrzvva9d5a6h016llg0brpf9qjpg58p3"; depends=[Biobase]; }; - fission = derive2 { name="fission"; version="1.1.0"; sha256="04rwbx0dd6fjyg76jw62vimllq40lb432bzmpf051x9gjqfyx0v2"; depends=[SummarizedExperiment]; }; - flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.17.0"; sha256="1ahg5g9ypxbhm7jrsbq1hjk5r5fmgvirawfd2xqfiaw5x9pkmrai"; depends=[flowCore]; }; - flowPloidyData = derive2 { name="flowPloidyData"; version="1.7.0"; sha256="0f3cnq2s215a6wrz2cbp90219smvhr4zsvl02wbd40xb8902zhdc"; depends=[]; }; - flowQBData = derive2 { name="flowQBData"; version="1.7.0"; sha256="1xla98i06j1qi2w88x1v8agvqcljzwxfcxakw0fl6phwl07hz9na"; depends=[]; }; - flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="2.17.0"; sha256="058q46w84jd7rf50pn26fiyh1n312jvxbcdrm5i2mmzg358hrr6y"; depends=[]; }; - frmaExampleData = derive2 { name="frmaExampleData"; version="1.17.0"; sha256="10lr219ghj409himn3g080s5saln3k355x9jhrk9fx69r8g127d7"; depends=[]; }; - furrowSeg = derive2 { name="furrowSeg"; version="1.9.0"; sha256="1a4gwrbqliz3cwn9iqwsn27qhmq9l3rh9k59ca94vsjmkrqx7bjk"; depends=[abind dplyr EBImage locfit tiff]; }; - gageData = derive2 { name="gageData"; version="2.19.0"; sha256="1zrps414095nkc49f90a7f8zy224ll60dm6b46sfkajd35bprafj"; depends=[]; }; - gaschYHS = derive2 { name="gaschYHS"; version="1.19.0"; sha256="0alxcrnk8kyjrs73idgihwvz42hbn4d6laayl849rzcna1fp48sp"; depends=[Biobase]; }; - gatingMLData = derive2 { name="gatingMLData"; version="2.21.0"; sha256="16gwgign7bq4yccq36wav2w8xl193c6aca6bgh9l8fv0z0rdgxnv"; depends=[]; }; - gcspikelite = derive2 { name="gcspikelite"; version="1.19.0"; sha256="197lx2a6jlsrv5bg3ih28maikyb8jk91krifk80xys3yfhp9dhyb"; depends=[]; }; - geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.17.0"; sha256="0qxdhn5is2d47iv01z7in8gd3s2dzrgir8s8j4611f7sgy9s9px4"; depends=[GenomicFeatures rtracklayer]; }; - genomationData = derive2 { name="genomationData"; version="1.13.0"; sha256="02fq74q6vkraivdrka8l0hascvsxg2ys6p40774vjhrhrcvmnfkm"; depends=[]; }; - geuvPack = derive2 { name="geuvPack"; version="1.13.0"; sha256="07h53q19zg89rvzjk3aqgp52gynlxg5frxm5h2q3q5ihidp118cr"; depends=[SummarizedExperiment]; }; - geuvStore2 = derive2 { name="geuvStore2"; version="1.11.0"; sha256="1ggac70x9pblbnzm6wg6rpmbgrkf802b2vgnfah1516grx0dwrkd"; depends=[BatchJobs GenomicRanges gQTLBase]; }; - golubEsets = derive2 { name="golubEsets"; version="1.23.0"; sha256="1h45rwz6z4wgibbyafv8946vfs303km7ixcradml4ymbpwibp4ib"; depends=[Biobase]; }; - grndata = derive2 { name="grndata"; version="1.13.0"; sha256="1ybgk5nf9nqrmw4mchpf183zyik6szzsm2cxh619fv27f0i3hjzk"; depends=[]; }; - gskb = derive2 { name="gskb"; version="1.13.1"; sha256="1jpl7vm2r28bf70mv2sy0dkdn6yn27w96ja2a0yynbpd509v8fwg"; depends=[]; }; - h5vcData = derive2 { name="h5vcData"; version="2.1.0"; sha256="036bvqd8glpk2armbv42wxv28k6rqg301l7i04wp85d94ipgn6yk"; depends=[]; }; - hapmap100khind = derive2 { name="hapmap100khind"; version="1.23.0"; sha256="07r1nsl92awkkw41midkb9iv4c93my7c222li2f4mym8hn4ahn8p"; depends=[]; }; - hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.23.0"; sha256="0dvb3b2ls7g66vsv9qzl29kkjmdd6mwrhqxzj0a1d7qnkg48kgy1"; depends=[]; }; - hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.23.0"; sha256="0jqyvd1khz84l1qw31xk2szb9ycsp76yrs1h81ahg64sslygnfg0"; depends=[]; }; - hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.23.0"; sha256="128p97qmp7br5vwmn934akkh0h4xgirpzc4q7kaxh3w211rch7rm"; depends=[]; }; - hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.23.0"; sha256="0a1n93nin8hpqh0qswbl9phlwgllam0xxpa2qxr63dyd5k1liwz6"; depends=[]; }; - hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.23.0"; sha256="1m17r4va3vbiml0avlb7xp2qhh82vig934h3gpmz9190hy6ikds4"; depends=[]; }; - harbChIP = derive2 { name="harbChIP"; version="1.19.0"; sha256="1566kxfblk6z4dia4f3gl3v0dsz8lx343nlflbp2wfb6gd314dl6"; depends=[Biobase Biostrings IRanges]; }; - healthyFlowData = derive2 { name="healthyFlowData"; version="1.19.0"; sha256="052kvg8gvfbqc4fpr8np1q9li7f52daq1rndpg7zmc5zn4nqjzrn"; depends=[flowCore]; }; - hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.19.0"; sha256="1c113f0aj51mdvdizi6m2wmm0v7zxsa3pkp3bjq2426v449qr3ls"; depends=[]; }; - hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.1.1"; sha256="1h1n76j6l0nqqf18a5w5c8vmjd579jdh2ix84j70s30nkzbyxhyw"; depends=[Biobase]; }; - hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.19.0"; sha256="005llh7vpfc01qbq1wnq1nribqgh1kj7mw0rz59dsmr92czm7lbi"; depends=[]; }; - hgu2beta7 = derive2 { name="hgu2beta7"; version="1.21.0"; sha256="1d80nxbf8ffmh7ipvxw2smvhgq4xvjhnhmwpwmkwn30yghrm46wj"; depends=[]; }; - hmyriB36 = derive2 { name="hmyriB36"; version="1.17.0"; sha256="1s1gsysv8wsk9fzd34fjw2rp6jk8nysg1wd6dhay5mqphv92abkh"; depends=[Biobase GGBase]; }; - humanStemCell = derive2 { name="humanStemCell"; version="0.21.0"; sha256="02y71ydwlygn6yickjx3gjsmrhp6dnvqk5319is70gwd214466r1"; depends=[Biobase hgu133plus2_db]; }; - iontreeData = derive2 { name="iontreeData"; version="1.17.2"; sha256="1y3jawc5rs1fhv90yygkjghp1ir4zw540hi2ncml4lm003d42ghq"; depends=[]; }; - kidpack = derive2 { name="kidpack"; version="1.23.0"; sha256="1ib24nbvqgids10k1glvpswavnv0qd14nvx9bw13bk09vndagkyi"; depends=[Biobase]; }; - leeBamViews = derive2 { name="leeBamViews"; version="1.17.0"; sha256="1mldlpdpnivfi60rnsbz7466jf9ssyfgb2xv9ipwc8nlmszd6g45"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges Rsamtools]; }; - leukemiasEset = derive2 { name="leukemiasEset"; version="1.17.0"; sha256="15c31vzfn83pfjj8bmvg4sl0hynlvaz2wcg3fzlxmlpbf6b5rqd7"; depends=[Biobase]; }; - lumiBarnes = derive2 { name="lumiBarnes"; version="1.21.0"; sha256="043w39jdc35pgblprh2p4crpxcix39ya9kg3g4q8dcajasr13dag"; depends=[Biobase lumi]; }; - lungExpression = derive2 { name="lungExpression"; version="0.19.0"; sha256="1rbbkjv3vjrk6d22k7msnq124y47a8pb4vdf388f1a8j9403jfpi"; depends=[Biobase]; }; - lydata = derive2 { name="lydata"; version="1.7.0"; sha256="0lq17l0klsn081m2nd9hrx50nxksvf7186drby66qvq6bhw3vhms"; depends=[]; }; - mAPKLData = derive2 { name="mAPKLData"; version="1.13.0"; sha256="1h4x00a7rziqm3cqkddpp7ahrb36045yq71lskdjyp43k066jplw"; depends=[]; }; - mCSEAdata = derive2 { name="mCSEAdata"; version="1.1.0"; sha256="0rcfyk6mwlxgkk7q40djbcbd4kx4vyy79h6dxb37zd7mpzxj03nx"; depends=[]; }; - mammaPrintData = derive2 { name="mammaPrintData"; version="1.17.2"; sha256="0015cz3czxzzrx7ba8lqr1a5i4nh1mns114br660y9d32j1nsw0f"; depends=[]; }; - maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.25.0"; sha256="14m82492wb7jmqwjllnqak9rivyky1prcqgp1yn0g05c406fj0r9"; depends=[]; }; - mcsurvdata = derive2 { name="mcsurvdata"; version="0.99.4"; sha256="0kv2gq9vr0z2sg8v7mv0ky66gvwf2hbaisw2g02a81bzhjvyjky8"; depends=[AnnotationHub Biobase ExperimentHub]; }; - metaMSdata = derive2 { name="metaMSdata"; version="1.17.0"; sha256="0j6h0s75w50jp3lcfs5cilqaqhhinlfn9c6zlpki6906fj1q6dxx"; depends=[]; }; - methyvimData = derive2 { name="methyvimData"; version="1.3.0"; sha256="0jacj9jyqs5x11xds6bindab6q96br95r37dxmgxw5gxl9lcn6ql"; depends=[minfi]; }; - miRNATarget = derive2 { name="miRNATarget"; version="1.19.0"; sha256="05x4vl8x2brm3bj04kddzcqjnm72jw29prmcwr1ildbaadmzh3fg"; depends=[Biobase]; }; - miRcompData = derive2 { name="miRcompData"; version="1.11.0"; sha256="1qgzplmv16anh7c760nf51fh671z0lmxqmkn0qfmj55d54gfgfmh"; depends=[]; }; - microRNAome = derive2 { name="microRNAome"; version="1.3.0"; sha256="0hbs64bhd129cq098y5ijf6q2nvn2w382d29isws92q1ln12r36b"; depends=[SummarizedExperiment]; }; - minfiData = derive2 { name="minfiData"; version="0.27.0"; sha256="1h7mb52p73bw66rxwjjfmaan6scs9pc6rj2f9wb5hx9hddwz5xy4"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; - minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.7.0"; sha256="119sr9yb82dlcjgddlqwzgn72c7zghz26kzdda48s9zxlf31f9yp"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; - minionSummaryData = derive2 { name="minionSummaryData"; version="1.11.0"; sha256="1i5ilakb9a4w7zf4zwymmpxyqn8s4y7295gdw2spgafgny0ayvag"; depends=[]; }; - mitoODEdata = derive2 { name="mitoODEdata"; version="1.17.0"; sha256="1pabl518xj88hlpfdqsbg2178ac2in11ma3y0syvq7wr2nqdqj6s"; depends=[]; }; - mosaicsExample = derive2 { name="mosaicsExample"; version="1.19.0"; sha256="17xvlaxlw6jn7w81dyg74n84nny6apaxv8b7qbv7gcyil3h2xr7f"; depends=[]; }; - mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.19.0"; sha256="1y7vkiqp4mkf16mpl5yl1jzmh1fv67d6k4i8qfi1lm68q2av9ggv"; depends=[]; }; - msPurityData = derive2 { name="msPurityData"; version="1.9.0"; sha256="0z7gs75bci301mhhp9j8lxpivjns2bmr51vsz04d4k308j19w1wv"; depends=[]; }; - msd16s = derive2 { name="msd16s"; version="1.1.0"; sha256="09zjzad3blq6i1m6fnkfjpllnvjn9vlrlc075gcm2gpwcx4w775a"; depends=[Biobase metagenomeSeq]; }; - msdata = derive2 { name="msdata"; version="0.21.0"; sha256="1srm1djnzfrj6klzxm2s721glk75lakb2428arqn3bm8vzvqw5vy"; depends=[]; }; - msqc1 = derive2 { name="msqc1"; version="1.9.1"; sha256="041fz9md3q95p1cwc7bcqam2z555sin2ib7ryssp79hp8iibx50g"; depends=[lattice]; }; - mtbls2 = derive2 { name="mtbls2"; version="1.11.0"; sha256="1ismd5yp3vgj1cqp4y92gy5z856bs6sy3fgbigjjba2rrb3m4k1z"; depends=[]; }; - mvoutData = derive2 { name="mvoutData"; version="1.17.0"; sha256="13kakn04xrngx9m80m1gqwdx3f75qixy6h9y0jvh16jk49kdnxcd"; depends=[affy Biobase lumi]; }; - pRolocdata = derive2 { name="pRolocdata"; version="1.19.5"; sha256="0gci5k1wxmnwy76nhnpjm9hysxpzjz29xw8j8srp96zn1bskaayi"; depends=[Biobase MSnbase]; }; - parathyroidSE = derive2 { name="parathyroidSE"; version="1.19.0"; sha256="1dmnm348yxa9p6lnia4iiil1s4jkxj1n83frhml06brnqymbb9wn"; depends=[SummarizedExperiment]; }; - pasilla = derive2 { name="pasilla"; version="1.9.0"; sha256="09rzh3w8nki9gqsk3pznk867ipg7s7imz7ma67cl0rh8pz2vg05i"; depends=[]; }; - pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.19.0"; sha256="0d2b4qav1m0whr7gwn2h2962qd72i3fc0y9c36k6nxr7jyfmv1jj"; depends=[]; }; - pathprintGEOData = derive2 { name="pathprintGEOData"; version="1.11.0"; sha256="1s5nilgzs1kgdjaqyq7warfg672qvd14m61bdvl0g12bkab61sv8"; depends=[]; }; - pcaGoPromoter_Hs_hg19 = derive2 { name="pcaGoPromoter.Hs.hg19"; version="1.17.0"; sha256="0wwd5cc8ywi5181q8hrxw6jx6pxyrfayfdpw7jzp3nkj8x222d31"; depends=[]; }; - pcaGoPromoter_Mm_mm9 = derive2 { name="pcaGoPromoter.Mm.mm9"; version="1.17.0"; sha256="0g5y5nsi99dsx6n1zfjlc6vi4ikmv2l1ba6sbdid9019k79v4495"; depends=[]; }; - pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.17.0"; sha256="1qz6saflpsa9naj536k7ciqks95hb6l1z2v6srclqq7b45465h1b"; depends=[]; }; - pcxnData = derive2 { name="pcxnData"; version="2.3.0"; sha256="1whw0wrfq1dfbxpfcz9z749dh27fadxmwp3dln945qh0nrjli6zc"; depends=[]; }; - pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.19.0"; sha256="1rfp34332p0fbx9yfb87rlhwwzjy1pm3zf372pvhv1r7qm8w3dyh"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pepDat = derive2 { name="pepDat"; version="1.1.0"; sha256="0yqlsdzjqwdvjfy7p6rls2xy5bph75pivkvizj575pmagdviv882"; depends=[GenomicRanges]; }; - plasFIA = derive2 { name="plasFIA"; version="1.9.0"; sha256="0ivyvrx2wmr9wsi852h3fdkbc8qrxhx1gf21aiazlygz3x796fml"; depends=[proFIA]; }; - ppiData = derive2 { name="ppiData"; version="0.19.0"; sha256="0hglfcyzlz7j090qylilqxx9jhivk3ipkq6q0zn2grydrj0g0xib"; depends=[AnnotationDbi graph]; }; - prebsdata = derive2 { name="prebsdata"; version="1.17.0"; sha256="1jccx76j7xqbl4660f0akh6bnvhcvpn1wkn2hchbv9w1s9ywy9pi"; depends=[]; }; - prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.9.0"; sha256="0wqm9wbqz15ls55mzvd6kfssix02pn2qaymin6s0b6w2imji85np"; depends=[Biobase]; }; - prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.9.0"; sha256="19r3gb718gll5fx03q1q0471r7fx25iix7ncff6v54pp4lvnjk9q"; depends=[Biobase]; }; - prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.9.0"; sha256="1y9pzi3w2k3fj6lnmlhzh5dvazb7vkqvchm1a6fi3lj3wdqv12lw"; depends=[Biobase]; }; - prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.9.0"; sha256="0pclqc7qzypwd4jvld3dmy43fc5hram1lzcfbdnp4vj8r86mw7il"; depends=[Biobase]; }; - prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.9.0"; sha256="02vg37vllda3yvw6lq7xggil6l3n7v4y37s2cqixqrrmnczzqb2z"; depends=[Biobase]; }; - pumadata = derive2 { name="pumadata"; version="2.17.0"; sha256="0ag7kv1k9jaj943l0szxlk2qfx5mlpspwsrnnyxxcpi3s8r8nyn4"; depends=[affy Biobase oligo puma]; }; - qPLEXdata = derive2 { name="qPLEXdata"; version="0.99.1"; sha256="05v19rlbskvy15504ys8x3s2hhbdzwnyz3dwjas6h0b7rs3d51p7"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; - rRDPData = derive2 { name="rRDPData"; version="1.1.0"; sha256="16xk33bry0203sr79lzs89pwzbqds29894fc2hjr9qs624wrzvnk"; depends=[rRDP]; }; - rcellminerData = derive2 { name="rcellminerData"; version="2.3.1"; sha256="1i149vpfm873nzykbxf93rkrmyjshri5xi7awmxf60yiwacbafkk"; depends=[Biobase]; }; - restfulSEData = derive2 { name="restfulSEData"; version="1.3.0"; sha256="01vbzdx354qpl58lznn9938jn93rf9nikwjfmy1w33z5cmirc7ad"; depends=[ExperimentHub SummarizedExperiment]; }; - rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.19.0"; sha256="1bcn3s36w3asb2di8851wg67dpx3rwalw9php1sklzrbh2f7jazs"; depends=[]; }; - sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.5.0"; sha256="06p4cq30diwx5flxc31lw3k6z66y6villf99qq99f4ab5x3gad94"; depends=[SummarizedExperiment]; }; - scRNAseq = derive2 { name="scRNAseq"; version="1.7.0"; sha256="15cxr52qakxhsbjnm8vl33qlwbvl3lghkrk4l2v0dih4mw4g65nb"; depends=[SummarizedExperiment]; }; - seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.13.0"; sha256="0z9dspkjvjn20q542bjq7xyc7fpy76y3ic01h14cvql42m0vhl53"; depends=[]; }; - seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.17.0"; sha256="0hz9vf8fplqm3gfrfiiirm0w6g9x6bjq7l96275aizbx3g6a80kb"; depends=[]; }; - seqc = derive2 { name="seqc"; version="1.15.2"; sha256="1bc4ibhb7wr08c794m1ljy3hz4fy0vikavg7g7y6l3rjfvlns7lk"; depends=[Biobase]; }; - serumStimulation = derive2 { name="serumStimulation"; version="1.17.0"; sha256="153zq6qpk02mkk31v5sl129j50wiw9n8c7n28f39w0mzg93yjyv5"; depends=[]; }; - sesameData = derive2 { name="sesameData"; version="0.99.5"; sha256="0y2xkxrbj5fla75rq4iysa5ckmvv6fnbi06nk372n0gyvi0v5w8d"; depends=[AnnotationHub curl ExperimentHub]; }; - seventyGeneData = derive2 { name="seventyGeneData"; version="1.17.3"; sha256="1aq5pzj70alv4kmi79kdyc9v0441gvfgibzf5j06zh6b2bc409x6"; depends=[]; }; - shinyMethylData = derive2 { name="shinyMethylData"; version="1.1.0"; sha256="1qd8193vvs22x8hfy70ih2m5gx4s46hd0fas9ann198vv4rhygxz"; depends=[]; }; - simpIntLists = derive2 { name="simpIntLists"; version="1.17.0"; sha256="1cgr86ibyz4xmhsrmrr0qx8f1xhclw7q4mrrbr5znvy4nvhbzpz6"; depends=[]; }; - stemHypoxia = derive2 { name="stemHypoxia"; version="1.17.0"; sha256="076h70m11z178q1v58rbb1731nskck64sr4w29x1jby8h87rqkvk"; depends=[]; }; - stjudem = derive2 { name="stjudem"; version="1.21.0"; sha256="1ccr0zcqwffizqbd624j980kn40hmic2497mj2ws19chwqxaz24j"; depends=[]; }; - synapterdata = derive2 { name="synapterdata"; version="1.19.0"; sha256="1yppixbw3pxsaag1zfsd39p78d5l8702ysxxjgnmi50ak0lrwb2w"; depends=[synapter]; }; - systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.9.4"; sha256="0k8nybycswz78l0v61nidnirw3i9k41f1150ssglxyhqsvxpn8xd"; depends=[BiocGenerics]; }; - tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="0.99.3"; sha256="16p36sailxw14f051c3k89gz2i9blky0vx961s36mmnd5sqn6skn"; depends=[bsseq ExperimentHub knitr]; }; - tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.19.0"; sha256="0mpj8j8s9380lf830b862k2rj1mpfa3vflkai5bacwnx9i3dbmnz"; depends=[]; }; - tinesath1probe = derive2 { name="tinesath1probe"; version="1.19.0"; sha256="07fyj1vdpzkz8iw6d9bqxgi4482rvq0r945p3rxa5a0cvwcsh1xi"; depends=[AnnotationDbi]; }; - tissueTreg = derive2 { name="tissueTreg"; version="1.1.0"; sha256="1whm1a9r5bmrdzqchv7qzgnxnclq1qbzqjv0p6f6d6y7mw3rr6f6"; depends=[]; }; - tofsimsData = derive2 { name="tofsimsData"; version="1.9.0"; sha256="17pwxdik4phg1cc10ycp2j38n63l1rfna8pzz16j05858ig24lif"; depends=[]; }; - topdownrdata = derive2 { name="topdownrdata"; version="1.3.0"; sha256="095mhjpni166p351k50y0605gb3ydsrhdnf8i92w6q84qnl9dapw"; depends=[topdownr]; }; - tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.19.0"; sha256="1gby12vp7b88h3g86r5r01lj86chs30q505qijv3zq769px7fd2g"; depends=[Biobase]; }; - tximportData = derive2 { name="tximportData"; version="1.9.2"; sha256="0j7nwkfrvli8wx3jvrfn1qygvzyzvmzlp5vq529ssqf6mka8i2r3"; depends=[]; }; - vulcandata = derive2 { name="vulcandata"; version="1.3.1"; sha256="1jgiryn6cpmbipaif5d5yhwrl692hc6nac5abjip31l0rqmf4qig"; depends=[]; }; - waveTilingData = derive2 { name="waveTilingData"; version="1.17.0"; sha256="1w0wvnk4r7vvg9xvqmpmwzbp1sr7plg214d6wgdwgmp9bm785vxf"; depends=[]; }; - yeastCC = derive2 { name="yeastCC"; version="1.21.0"; sha256="1kbhbqcab7p3p160xvgwka8gfhxnjl05p9hxb7jjixi4yr30dzvj"; depends=[Biobase]; }; - yeastExpData = derive2 { name="yeastExpData"; version="0.27.0"; sha256="13vz99brk9bb10swlrisiiwilyjn6pl1z3arw47sahm7grw4sgpc"; depends=[graph]; }; - yeastGSData = derive2 { name="yeastGSData"; version="0.19.0"; sha256="06gnrh6kll5rmdvhigrf7blyyap6dz517gkhx2ljvlbwwz1hd35l"; depends=[]; }; - yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.17.0"; sha256="0xq65383vmh1jnfxnfhrzfdhr5s0qzy0xb844d8lvmsn77mq7jpr"; depends=[]; }; - yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.19.0"; sha256="0sy72a0dvqq75hg599nfq6rv9frjwmvzqyissksa4dpbm8n3q086"; depends=[]; }; - yri1kgv = derive2 { name="yri1kgv"; version="0.23.0"; sha256="08i7iz0shrhh3pnn88x3fnkpqrics4nq43fcwzkk1582j1spg8yr"; depends=[Biobase GGBase]; }; - yriMulti = derive2 { name="yriMulti"; version="0.11.0"; sha256="0gsr2y94hfmjmpz37y7q80wnkhlz8q028qn7dwm15a5rvzvs8ccv"; depends=[dsQTL GenomeInfoDb GenomicFiles GenomicRanges geuvPack gQTLBase Homo_sapiens MultiAssayExperiment SummarizedExperiment VariantAnnotation]; }; - zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.1.0"; sha256="1sfdzs0s0jjrm36v016zf4xbw2rl2gfibzbzvgj7vark30f8w960"; depends=[]; }; + ABAData = derive2 { name="ABAData"; version="1.18.0"; sha256="08lzn9342smxr4vidy81rszgcbipk7l8a336g4iym4bc9fa6sspb"; depends=[]; }; + ALL = derive2 { name="ALL"; version="1.30.0"; sha256="1gr0r2g6is475bcz7y1h00wr1sklky1d061mc70i7hf1fgdp1a0z"; depends=[Biobase]; }; + ALLMLL = derive2 { name="ALLMLL"; version="1.28.0"; sha256="09ly5gas0nw92ibyf1ngcvz78yn4dn3jc321y61jmmchxipb1kjm"; depends=[affy]; }; + ARRmData = derive2 { name="ARRmData"; version="1.24.0"; sha256="121x37fnbhplza8ndj04zy04841c5mz2zkfh7645k4sq2qqk4zyg"; depends=[]; }; + ASICSdata = derive2 { name="ASICSdata"; version="1.8.0"; sha256="1xg0gbdv8pkbpy0939fxfgbkdmpqzzqbfc14smyr6qjbw7zpbr4k"; depends=[]; }; + Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.24.0"; sha256="1l03mk6pdz28dzyfid5whn08qkxyfh2dp6b23rsl60ycgb9y41nx"; depends=[]; }; + Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.22.0"; sha256="0kkvf5mq223y0drl9xbi7rxxq4v03380mq7ddwpx76jz9vac9gz2"; depends=[]; }; + Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.26.0"; sha256="03xpcc9x0rdzndrdb73917iqhs2xfn4x3ixa4bjj048zvbdm4b0y"; depends=[]; }; + AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.26.0"; sha256="18c5ydx45gf16fdimn9bzz6z1w3x41kvcsv9b1hclj0bxsym863k"; depends=[]; }; + Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.26.0"; sha256="14pcmka5ifpmv54mg78gggk8f900absdmwpm0y2qxpv4k19fqr0m"; depends=[]; }; + AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.28.0"; sha256="0s079zxd4ik20z5l9zl27zmaxxy0wmc9w4c892mqr1qk8cdp4i74"; depends=[affy]; }; + AneuFinderData = derive2 { name="AneuFinderData"; version="1.16.0"; sha256="19nfx345k8hlllfrhs71bvbnzg3lhr9p9lg4z5lr73kqpxfgx1jc"; depends=[]; }; + AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.18.0"; sha256="0ajzzvpamzk6cpdx5js2ccbhk44wmagl3jxr2h48x3p9cklnjb9l"; depends=[]; }; + AssessORFData = derive2 { name="AssessORFData"; version="1.6.0"; sha256="1qcv3a8pv3kzdhi2bns7j4jn9mrgfpjh2mrc6q7y1lmgqi53knq8"; depends=[DECIPHER]; }; + BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.26.0"; sha256="1lncaw5hh42rx3f145f5d7a9sngnr8ssrip9jbi3c6qgd3g5xiir"; depends=[beadarray GEOquery limma]; }; + BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.8.0"; sha256="0vlgihw522dlkky0jpb01agxyqq394w2gahacihzlc22dc83iz6d"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; + CCl4 = derive2 { name="CCl4"; version="1.26.0"; sha256="1p0jly4v6mck2gnfy09alk57fvrvls5184p7vknn70fcjq02ivbf"; depends=[Biobase limma]; }; + CLL = derive2 { name="CLL"; version="1.28.0"; sha256="0cbrm1hr9rvv2qjdxzjy99d5jbspwiyva9zmfy8nqb1kz17nkrh1"; depends=[affy Biobase]; }; + CLLmethylation = derive2 { name="CLLmethylation"; version="1.8.0"; sha256="0r5q9j8cb7s29dpf3nd5hg7wl07rnfzk1mxmrh2hkkslzawrwrpy"; depends=[ExperimentHub SummarizedExperiment]; }; + COHCAPanno = derive2 { name="COHCAPanno"; version="1.24.0"; sha256="1ay0xh3i13aqp0lisczm8jhvk13ld34jx2vc8jvjdzsxpfv5x7v0"; depends=[]; }; + CONFESSdata = derive2 { name="CONFESSdata"; version="1.16.0"; sha256="0fqmxz5jbv6jygbmq95bdyfxcyri6djsscdaxbxkfv2vq3wml1ig"; depends=[]; }; + COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.24.0"; sha256="0pxkmq2xrq4ka7i5rnfvklilddj65m87f04ivh9xv0j19w51rxfn"; depends=[]; }; + COSMIC_67 = derive2 { name="COSMIC.67"; version="1.24.0"; sha256="1a9ciia5g6w34k5mlnssn8r97v1v2bv9qmar4aklif5rnhkwr7mx"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; + CRCL18 = derive2 { name="CRCL18"; version="1.8.0"; sha256="1mcmbpi9wl5cln1wj30m5gkvfdj74kij32vfvvjvl38kw1jc4zyk"; depends=[Biobase]; }; + CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.20.0"; sha256="13465kiz3v8vyb80374lj0awfb5kw1z0rixin46nbi9j1jfsysmi"; depends=[Cardinal]; }; + CellMapperData = derive2 { name="CellMapperData"; version="1.14.0"; sha256="1wc3ck21xdqcrv85jhfh07yvlhkw22xc567lj7yv8vzy0j68gvyv"; depends=[CellMapper ExperimentHub]; }; + ChAMPdata = derive2 { name="ChAMPdata"; version="2.20.0"; sha256="135z6wkrmsg9bwj27by6x5850bpnwzncxvia1x8ggwqxnis0fl9c"; depends=[BiocGenerics GenomicRanges]; }; + ChIC_data = derive2 { name="ChIC.data"; version="1.8.0"; sha256="0lx1yfimxg032hapdx6i6n11fjv1dmcd5a9d7id1h9cgm2qydq1w"; depends=[caret]; }; + ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.26.0"; sha256="0dzxdha2fay07rc7m5wj8aiggmn7qfifjy11ydqql4sfxw7l4wp1"; depends=[bigmemory]; }; + ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.12.0"; sha256="1yzy0y40ahw5p8ia0r3r5ns4an2n9m91zb9ypc25cjasgwpqca77"; depends=[]; }; + ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.26.0"; sha256="1bd119mh0r6m07ni2fb14dyambdzx5yfpy33n9r6f1mkcb39j4gp"; depends=[affy hexbin limma qvalue statmod]; }; + CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.4.0"; sha256="0j8xb2izl0gxwib0srk5bj4gdavi0czp4hwg2w61z7xgdpgqra33"; depends=[]; }; + ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.24.0"; sha256="0agb5xm7fm8cs9lj5yn9zr006zdhyzhz5q4gc920ksaqn9c238nf"; depends=[]; }; + CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.6.0"; sha256="0adly63fqnq600if81x0wivv792n6s33a65gjfkfjwvhi9n5lwbr"; depends=[ExperimentHub Rdpack]; }; + CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.20.0"; sha256="07i403mxx1zr7j7bkgmigl0s7ijr6wfnci1x56z9qy0jrrd21zpc"; depends=[]; }; + DAPARdata = derive2 { name="DAPARdata"; version="1.18.0"; sha256="1vnb08lzzm5x23j8slw939al6shb83zv85y6wzyfil2szic51xr0"; depends=[knitr MSnbase]; }; + DLBCL = derive2 { name="DLBCL"; version="1.28.0"; sha256="0d2jv5yni681a3rb39qgc1n8klr0lbwilkrkvd9wv0qq7glv9ba1"; depends=[Biobase]; }; + DMRcatedata = derive2 { name="DMRcatedata"; version="2.6.0"; sha256="17k4cgpqkl47i2cp0c4nh22sz1w54pal16dkvzvrm0vzcvzxiwrv"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; + DREAM4 = derive2 { name="DREAM4"; version="1.24.0"; sha256="1dxsyzv5y4ivsg078j2m3zvv4h7c8rhk59gf3ndr8lcwp6a7xsim"; depends=[SummarizedExperiment]; }; + DeSousa2013 = derive2 { name="DeSousa2013"; version="1.24.0"; sha256="1svjk5kcjhy23b1i5345y6j3mzdv8lxl4bzm60dcghz4inzbay5y"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; + DmelSGI = derive2 { name="DmelSGI"; version="1.20.0"; sha256="0r1006as1vnwpzf42ps5ca2xbppfb8dcckkiwcajj1lv3g7265kn"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; + DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.26.0"; sha256="008msb4785ghcg0gqyxf999l58j89cvxbkci4n1z6lnjf2gdvl6v"; depends=[EBImage]; }; + DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.24.0"; sha256="05qc92cwkfwc7s68f81nd05xyl890m0w0w31n7pz8r3vxf9x09cy"; depends=[]; }; + DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.6.0"; sha256="1gw99mgjmjv1fq7qg0g60r3x4zk0gp4d2zlm9p81avrz8gifyglr"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; + DvDdata = derive2 { name="DvDdata"; version="1.24.0"; sha256="1z5ijx56iygk0qbi2sb4r4rk42m3pblnig0mc8fh51mrqf6c4f6y"; depends=[]; }; + EGSEAdata = derive2 { name="EGSEAdata"; version="1.16.0"; sha256="1drkhw0a463b1bdpn0r3yg57i1ll076c334ikjvc2bd191d3ilnd"; depends=[]; }; + ELMER_data = derive2 { name="ELMER.data"; version="2.12.0"; sha256="098hdvcl340jhy1vf5rcv28bvi6bk6pfwblck7xsmhdshl9x41mg"; depends=[GenomicRanges]; }; + EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.26.0"; sha256="06bp5549iisaagl00xnjr6bhpgvkiybjgnwsf8i2fqs55dyvrbba"; depends=[GenomicRanges rtracklayer ShortRead]; }; + FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.24.0"; sha256="11arnks0p6c6rx929w3h878imxlslla8xnd44lqgzhal73n22ks2"; depends=[]; }; + FIs = derive2 { name="FIs"; version="1.16.0"; sha256="0r6zrgrd8222rr4vk95gxanzjmdbj48rdc1wy3ld1h6rdjb8szyl"; depends=[]; }; + Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.24.0"; sha256="0hlqnsxcv6jbnswwyqfnxdgw7g2dygxcv81brlnrrw4whb3v12mj"; depends=[Biobase gplots limma VennDiagram]; }; + Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.24.0"; sha256="16mynpadclsciw7zayp3lgahzg1mhi186wjn160dzd2sasz5syw4"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; + FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.26.0"; sha256="0dlhr5dagddw399w64jx01pfbhzx6j2rldpqrpxa03n1fjr5qfaa"; depends=[minfi]; }; + FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.6.1"; sha256="1hkw1mg60wf64lrq3h26x2zp0mvhriai9d46mirmkfng4y8ka4xy"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; }; + FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.16.0"; sha256="1j1hl33vydrhgii0fam66nywycg80hi845hndhcv5i9l5siiiwbl"; depends=[minfi]; }; + FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.4.1"; sha256="0xyji58czc2y0snrydgn23q4z80zabda67jfaqjpwz0zpjh0hwzm"; depends=[ExperimentHub FlowSorted_Blood_EPIC IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; + FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.14.0"; sha256="1b2h5r4pv4z8v3cb2sw0wg45rb54gqswrmvk4jvwwzypfdd6cvfw"; depends=[minfi]; }; + FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.24.0"; sha256="09305nfvwn4n4xzvjwcyiwq49xhgajgmr7r86yypmx643r86rwai"; depends=[minfi]; }; + FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.21.0"; sha256="0kcgvfks2y9jiljl9a2s13ryljv92q2h656jfjkqmfw0zrlxx244"; depends=[IRanges rtracklayer]; }; + GGdata = derive2 { name="GGdata"; version="1.26.0"; sha256="03klh3yczfba83yh7350jwn1dqq1bi8lgx9h1bqilhc36plz14k5"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; }; + GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.6.0"; sha256="02pjidn3sz6z6zy8p8wp5nmin5cmjglddq035bbxzxbx6npb7mxk"; depends=[]; }; + GSBenchMark = derive2 { name="GSBenchMark"; version="1.8.0"; sha256="1cwgrfyjjz5l33qcya2vd9c2d89ma8053yz1yv5z1pvrfagdanli"; depends=[]; }; + GSE62944 = derive2 { name="GSE62944"; version="1.16.0"; sha256="0s5nf9qi940qx8vsmybva0v4yphg4s0nm8if0p2ipw4ignkayf09"; depends=[Biobase GEOquery]; }; + GSVAdata = derive2 { name="GSVAdata"; version="1.24.0"; sha256="17z2b7waggy4xv3bx92yhv53sgc4w7im5rq3mygdb91p1swqsgmc"; depends=[Biobase GSEABase hgu95a_db]; }; + GWASdata = derive2 { name="GWASdata"; version="1.26.0"; sha256="0az9vxafbdjm01ysz4zid8iglgddl81kfxg70zgrx6sal47kc4lz"; depends=[GWASTools]; }; + GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.16.0"; sha256="0df0231l3cpdf2n2bcm6wjs7nmbl96h4rajicba03r1a92ii0v6b"; depends=[]; }; + HCAData = derive2 { name="HCAData"; version="1.4.0"; sha256="16w6707dhw260m0f1n7nxf4k3g18qn3l7nmg9wqkdiwlczwhx8rz"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + HD2013SGI = derive2 { name="HD2013SGI"; version="1.28.0"; sha256="0ygz008dmhhd2sr2qpvqcha7jr5k3mr64w25pbjil2gx2lqz8lbw"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; + HDCytoData = derive2 { name="HDCytoData"; version="1.8.0"; sha256="1kj4hkl814a69pz9m2ifim14nwr3w6sw6mhwiv7y4ifv4hbvyd01"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; + HEEBOdata = derive2 { name="HEEBOdata"; version="1.26.0"; sha256="0mh6v6g24jm966d0nsrwcv52km72qi8jal6ann6qfa0qwvcbhr6m"; depends=[]; }; + HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.28.0"; sha256="0gxmg00xaafq3yz9zqqsyn19p3n8rlmy6q623xzssn7nvgggffsi"; depends=[]; }; + HMP16SData = derive2 { name="HMP16SData"; version="1.8.2"; sha256="1hfh9k9782irs2d7yp427x9x85mn4d6axvil9n7pa8a0s8b1f013"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; + HMP2Data = derive2 { name="HMP2Data"; version="1.1.0"; sha256="1vlq98g07vx4vx59mrclw3cimwvdxn60r510jfjnlb5nky1pasnj"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; + HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.8.0"; sha256="1d28ca12m0qc83f3jpd9n4h1d71vgfix7q770hg84aljx9xifmmc"; depends=[]; }; + HarmanData = derive2 { name="HarmanData"; version="1.16.0"; sha256="0snci97jrgk98yyjjbfm9659fq2iiabfpdx08iriv0lgf1k674zz"; depends=[]; }; + HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.10.0"; sha256="09xacn52wxgm31l9vjbbba19f975b8dwxhxv2bfjy61q73qsfxnj"; depends=[ExperimentHub]; }; + HelloRangesData = derive2 { name="HelloRangesData"; version="1.14.0"; sha256="1gx94wps1cb0ma0gsmnw9vcb03wv7f9m4kjmaiwj1p3awmvjlzlp"; depends=[]; }; + HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.8.0"; sha256="02fsfq716vfxcwczzdrarwqmmy739mxsrdhr13zvprppa2jw9mji"; depends=[]; }; + HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.24.0"; sha256="1sr250gypp2wyi12jq0k72w3galbi3sq00pgsq34habngr1ladzp"; depends=[]; }; + HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.0.0"; sha256="04wr6phglmms6s8dnpr03kdq3dba8vipx5w3qp8fkiha3f9b3pdi"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; + Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.24.0"; sha256="14hqlkyz4xp1jmhgmfy76dw5f3la2xcsz6pzdr7jn525bwmh4np3"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; + HumanAffyData = derive2 { name="HumanAffyData"; version="1.14.0"; sha256="0jgg1xlf699q89bx7scpibr905vi77yk59290b724y2qrimjg4na"; depends=[Biobase ExperimentHub]; }; + IHWpaper = derive2 { name="IHWpaper"; version="1.16.1"; sha256="0jfvx364zf5kbl5l8iff48ng9732d8c598n0b2yzz9glkja5w3wb"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; + ITALICSData = derive2 { name="ITALICSData"; version="2.26.0"; sha256="0s4b2j78ni8nwnzh7xlj1aacq522awvlp20isrx25nhnmnq3nbjn"; depends=[]; }; + Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.24.0"; sha256="1gmk5mknbqp3h21cqqqrhglpnm5f04ifliv46bns1k2rndx1d68c"; depends=[]; }; + IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.26.0"; sha256="0v6y52azp4a2x356kq2hqisnn581jhvyi02av4zjnxvr3h6qbh7j"; depends=[]; }; + Iyer517 = derive2 { name="Iyer517"; version="1.30.0"; sha256="0nrjbr9qnqnsmbn3i0kn9zg0m216f7xjm4jwpnlpcwacsz3x355r"; depends=[Biobase]; }; + JASPAR2014 = derive2 { name="JASPAR2014"; version="1.24.0"; sha256="1scrv91vy9i1fh2r15qkr1f0j78v211y366271ivwbf1r361npdn"; depends=[Biostrings]; }; + JASPAR2016 = derive2 { name="JASPAR2016"; version="1.16.0"; sha256="18sna9lly7yvgn317lpvgv2b4xm1cdv7lwcrvr3cf47mbwh7sj08"; depends=[]; }; + JctSeqData = derive2 { name="JctSeqData"; version="1.18.0"; sha256="096g9z3kmivn1vhgrz7blba0w5fchcivxd6zr132q24f9qciggyk"; depends=[]; }; + KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.8.0"; sha256="05a6lf3vxlzy91d90mmbnzl2kk30g2z3ql96n404hiplq0gp888j"; depends=[Biobase BiocGenerics]; }; + KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.26.0"; sha256="1brsghk3883f257v41kxqx7xmf6rmcvmhzlwx8527i7nnyk5yfp9"; depends=[Biobase BiocGenerics]; }; + KOdata = derive2 { name="KOdata"; version="1.14.0"; sha256="0wyaccdm6sj8qlzqdg44q45icnflnwrkajjav2pbpfi6wf055xna"; depends=[]; }; + LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.26.0"; sha256="0c4bv2dq153mg2a5rjshcmsbjl0jjx8ic6b8w6bjymqj823r73d7"; depends=[IRanges KernSmooth]; }; + ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.20.0"; sha256="1vklgv9ajsdmzmrqz1iah3bf19x91y8nzxxbfh4lbiw8si2c2rfr"; depends=[methylPipe]; }; + LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.24.0"; sha256="0w27kpa8a96sb94wvp801yll2g0cwyvkpfizfgxfrcd9grznwcmm"; depends=[]; }; + LungCancerLines = derive2 { name="LungCancerLines"; version="0.26.0"; sha256="0baapfr8w4718qh4kfx8x8jfi4qaif4blzl27g76zyqcm801y13m"; depends=[Rsamtools]; }; + M3DExampleData = derive2 { name="M3DExampleData"; version="1.14.0"; sha256="1l42jqdi25g3w08aiivs3swbk48sipfhc9ddpal4fimylr453w9h"; depends=[]; }; + MAQCsubset = derive2 { name="MAQCsubset"; version="1.26.0"; sha256="1lwzcy6ln722ixrcrrvhardkxpqsjyrlyfqpsj5za3m23mxln9hl"; depends=[affy Biobase lumi]; }; + MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.26.0"; sha256="1g2abaij70wqsxs49cirayx2w9za4x6bq0c6c1q7y14ii9a8sj0p"; depends=[affy Biobase]; }; + MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.26.0"; sha256="0dm00hr7p3dgyhcj6s4cgcx8pjv366fix5pr0arfm0zgl4gby1p4"; depends=[Biobase lumi]; }; + MEDIPSData = derive2 { name="MEDIPSData"; version="1.24.0"; sha256="17cv7nis0dlj4qvvp114akywq79my0z5dhn13mm2yz8x492s7dy4"; depends=[]; }; + MEEBOdata = derive2 { name="MEEBOdata"; version="1.26.0"; sha256="0rcw9ashljvdf1jsn6kyc36vrz3a8fsphmvabxc4b0plzx05brsv"; depends=[]; }; + MIGSAdata = derive2 { name="MIGSAdata"; version="1.12.0"; sha256="1mib6nibcxkjsf9hvf3q2sw6kbzyikfh6a663wf6awl0s876jlq1"; depends=[]; }; + MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.2.0"; sha256="0fczp8mbn4g7s1kfnw5bq7h4rydpwqg9nsad0vyafcn4vcpy05zg"; depends=[Rsamtools]; }; + MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.24.0"; sha256="118wxhj8gdprwkk8mr72d9sz3gx6lcz50s41yq6hkjcghpvpkba0"; depends=[]; }; + MOFAdata = derive2 { name="MOFAdata"; version="1.4.0"; sha256="0z52zmhwvdvdk2ngq31c8v98lmy531ygvl29nsaj9sxhjkj7m7cl"; depends=[]; }; + MSMB = derive2 { name="MSMB"; version="1.6.0"; sha256="0wbn9mn0aiqfm5g4qrbypz8yprz3wn6162nv398zpgz3c671380y"; depends=[]; }; + MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.10.0"; sha256="1np673w9ga64djlxkbazkdbl9ng8fm5s3s660i61iblgkv808n3c"; depends=[]; }; + MTseekerData = derive2 { name="MTseekerData"; version="1.6.0"; sha256="0hi3347c9sk89zmr6s07ny4s03q9v2iy0ycz7cl3jf9dwdm4kiy1"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges Homo_sapiens IRanges VariantAnnotation]; }; + MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.8.0"; sha256="1yhnkbdac4nb70w1lv7j2hhzcpsd7c6860pcjf0mkahvh1w6fb3s"; depends=[]; }; + MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.8.0"; sha256="0pksmm6wh8p6jqvv7r4yfwdbgpzjfjjcck61907dckbkq1s5jpsk"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.8.0"; sha256="0xx86g0x20r4x5p9ab9p2qyzsnjflg3cslfhgywcagr9k5ydbgbs"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.8.0"; sha256="08skv2gyiwrbqyigfcbdnajb5945lv0f6q9sydkkiwm2kgikipqx"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MethylAidData = derive2 { name="MethylAidData"; version="1.20.0"; sha256="1mvw87x8qd63jkh32kb1vnpwh7lyvs4pdiiyvalsvlm6xrz4izgh"; depends=[MethylAid]; }; + MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.2.0"; sha256="1658qxjr2i5i1iwvcn74xasiysa0mq0d3y7j0536dq5dqb639262"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; + NCIgraphData = derive2 { name="NCIgraphData"; version="1.24.0"; sha256="00v5sip4q08hvwsl32yflsvqwkm5cldcp2ys639rgjcyy2ygyyl1"; depends=[]; }; + NGScopyData = derive2 { name="NGScopyData"; version="1.8.0"; sha256="0lm0kkk0pqxqbwyiv61irljbhkqcamyl96fzp5xx8kzvzqjvgnkq"; depends=[]; }; + NestLink = derive2 { name="NestLink"; version="1.4.0"; sha256="1scfix1qlih2fvp1ib6j833m833328phr49q750v9w06sxgq8qii"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; + Neve2006 = derive2 { name="Neve2006"; version="0.26.0"; sha256="1xq35758qpwyy6wcniw2pdiv4bl3i9kawgzg2zlspkf14m4kxsyq"; depends=[annotate Biobase hgu133a_db]; }; + OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.6.0"; sha256="1jjxk97g58m1jly0sn99js6zgaamj1zidp3p6pjcipdr30gfgmin"; depends=[MultiAssayExperiment]; }; + OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.10.0"; sha256="1xpj66ab743nw486ixp6ijv59xy2g5jb07aafynpbn87mjq4f4yj"; depends=[rJava]; }; + PCHiCdata = derive2 { name="PCHiCdata"; version="1.16.0"; sha256="0cvg4mmpnkbicm2n678b31ji8gg828af2s2i3191dz2h1smg0938"; depends=[Chicago]; }; + PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.28.0"; sha256="1f4xnk11i5pgckglkrc4fp80x07aw318a0kr2lgdm9xm54ilvdn5"; depends=[affy annotate Biobase PREDA]; }; + PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.22.0"; sha256="0djlc83x67822fph717xx8lcx6qblpqvvb7ja5910fl3flqbf0w6"; depends=[PWMEnrich]; }; + PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.22.0"; sha256="1hgy7zjd057gxdxibi111nyzpsawkxs5a9jsrpxdrz378l0vg2b5"; depends=[PWMEnrich]; }; + PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.22.0"; sha256="1hp0n6790i6rhwx4x2kvf9bs0lwyx6jd394jf6rly889yysl7zyl"; depends=[PWMEnrich]; }; + PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.16.0"; sha256="1ml9fcpcah0w9rk0mmymjcsp16vnz60dry2r4bjxfi73m0qbr5l9"; depends=[]; }; + PathNetData = derive2 { name="PathNetData"; version="1.24.0"; sha256="1hb1gq35h4rnhzm00dk77la3y7imqhp9qg15akag5cx30pn4dqmz"; depends=[]; }; + PepsNMRData = derive2 { name="PepsNMRData"; version="1.6.0"; sha256="1j2z4ks355c2vnm6m0bk1b3yq73mi1pp9z7j39jll4arv7kmrm3g"; depends=[]; }; + PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.2.0"; sha256="1cn3y9mcrrh0yq2bsks16w3c041f5pir40zar86f25br7bw7kbas"; depends=[Biostrings ExperimentHub]; }; + ProData = derive2 { name="ProData"; version="1.26.0"; sha256="0vs4ybckr0bk7hcl1y2afp1rd1h0nya281pjs65dc4pcw6qhv32w"; depends=[Biobase]; }; + PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.14.0"; sha256="04h5gidmi0vwhs8vlg7kvijz938dk8ljf33r4xr84axvjlh3wh7w"; depends=[CAMERA LOBSTAHS xcms]; }; + QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.18.0"; sha256="05p10rm93625lh0gv6wvfdvvqz526q35p4mgih6d1mgm90kx099v"; depends=[QDNAseq]; }; + QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.18.0"; sha256="0jpdvd9s2g2fi4wdmbriz18spngbhny66v2b417mcjjlm4vqssv9"; depends=[QDNAseq]; }; + QUBICdata = derive2 { name="QUBICdata"; version="1.16.0"; sha256="1ya6r7fggwpfk8g7cv1f6x4aaarl5m625ch1rx6hw2mrjwazjgkb"; depends=[]; }; + RGMQLlib = derive2 { name="RGMQLlib"; version="1.8.0"; sha256="099gi4aykzkl4p0gs7w655rhrvyb295x2038szwbl7k0801ffjnd"; depends=[]; }; + RIPSeekerData = derive2 { name="RIPSeekerData"; version="1.24.0"; sha256="019jfgv6pk93cwkgq4wpq850ff7269s793vdg91amwpbq4z4ff2i"; depends=[]; }; + RITANdata = derive2 { name="RITANdata"; version="1.12.0"; sha256="16ysc6aaqb6y7prckbbbshl5g41hill43gp273j9mhgn9yqrd66s"; depends=[]; }; + RMassBankData = derive2 { name="RMassBankData"; version="1.26.0"; sha256="1v9by52hzncm54zw7rwjpw91anmbwaihkmh0qih44jh1l0zv3il8"; depends=[]; }; + RNASeqRData = derive2 { name="RNASeqRData"; version="1.6.0"; sha256="14g6ylmi3r4iv30sxdv4kl8c2fvkwng4z5b60dsiwm276ywd3ggs"; depends=[]; }; + RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.25.0"; sha256="0a8yki07p27bv6zhsys2l8yyx21742kb9pnvz0rhf3ynh3bdapd6"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; }; + RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.2.0"; sha256="1kzqw9jfjccviz7gaw19rkha3a8k1x9wmmdf8wlnbpfwv6f58m74"; depends=[ExperimentHub ExperimentHubData]; }; + RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.26.0"; sha256="0hc6kj732wvbg245zip12g7h04pj30wi8abkg00fdnqgrmd7l6d0"; depends=[]; }; + RRBSdata = derive2 { name="RRBSdata"; version="1.8.0"; sha256="1aa374gmq6hv59qxsnsgigivaa56062g7byykag0vnwy907s3jpm"; depends=[BiSeq]; }; + RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.16.0"; sha256="0yzq8h34c5v1hrwm944nz2iafzra2gqw94d3adz4q1vaggrv4n8d"; depends=[RTCGA]; }; + RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.16.0"; sha256="05fz5zy0y7g0ixv400z1cxrlwhqw6dhnyx5j5mnxw7d2w3zwwndg"; depends=[RTCGA]; }; + RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.16.0"; sha256="18vgrvfbcsa20jyaxyi645ipg1ybfvgdnjq3d6dfg0n06fvxslnd"; depends=[RTCGA]; }; + RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.18.0"; sha256="1p5a2667hrp0c5ip9lkil9g1ql5538g513n7x6ns9yjgxrlplmww"; depends=[RTCGA]; }; + RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.16.0"; sha256="0s0l7z2bvjhifqzllc6r57pki9pfn6kmzsk219xmjalc91i4p7id"; depends=[RTCGA]; }; + RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.16.0"; sha256="1z1vxcahxzxygy5l86bcx48a3bfk22c6w8dlp12sdwkj9qx4rsd9"; depends=[RTCGA]; }; + RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.16.0"; sha256="15bmd2208nj4hbqivqq7fi3fggbip0y15q5nf9dncvglrfk80yjs"; depends=[RTCGA]; }; + RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.18.0"; sha256="0klm1gxl45f8ipwisv0y72cicv55mffwd90y3m8vlacxhan4v6my"; depends=[RTCGA]; }; + RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.18.0"; sha256="0iyn91f2dblnyd3xpp6xlq2cnkd2imw87h985qxs5v8nb2xar0wq"; depends=[RTCGA]; }; + RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.8.0"; sha256="12rffpfgradgv9dgiv7gi7rbiyx8fy01fv993qqv7dnz2wpzy8zc"; depends=[Biobase]; }; + RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.8.0"; sha256="0flqmdg4wxyr5mv71rhks4jcbya8d0v8qz6iqa6c2qabmrl4sflx"; depends=[data_table]; }; + ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.2.0"; sha256="08v9prz162rf5i01lwv60k6k8skx2qxmpw4z8g6w5n67d5ap1wls"; depends=[edgeR limma ReactomeGSA Seurat]; }; + RegParallel = derive2 { name="RegParallel"; version="1.6.0"; sha256="1b3x8547cwv38wzfqrvkh9jrmzamn7wfm1sk2nk3i0xrhqh6jqaf"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; + RforProteomics = derive2 { name="RforProteomics"; version="1.26.0"; sha256="1javba8cqjnczprvd2lk36xy9yr2cxyj69gapqi4x1h0z274hjz9"; depends=[BiocManager biocViews MSnbase R_utils shiny]; }; + RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.20.0"; sha256="12g0fnmcv5lk0v96zrfzk594krrsrma8svwqv28lg6b1fvkaggcg"; depends=[GenomicRanges]; }; + RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.20.0"; sha256="18p8lfn2m5m5f79nyfzvp47ipgdfxqzsf1hlsgn4jsl7k1dn4gby"; depends=[GenomicRanges]; }; + RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.20.0"; sha256="1wn05pycjx3waa4327g4krr3ih91rfh6v8r70wj7d536lc4zgvvs"; depends=[GenomicRanges]; }; + RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.20.0"; sha256="1006k83ck6mvh1awczzd3bpkprl9611faicxxaxy7mghg15xn9s2"; depends=[GenomicRanges]; }; + RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.20.0"; sha256="1l4jgs7rvjbdyrnh8ax8yaqbz6nd3mxq6sagc0jx6g64imc0rr49"; depends=[GenomicRanges]; }; + RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.20.0"; sha256="0ylrg1zlzp7k54n2yhnxm222h671ci9p9bfllkp66rjyjrrb4kpk"; depends=[edgeR]; }; + SBGNview_data = derive2 { name="SBGNview.data"; version="1.2.0"; sha256="114fq1pqlc29ydl0gvwcbnls7lb4bzx5gc0bz8plm2r5a46dqr1k"; depends=[knitr rmarkdown]; }; + SCLCBam = derive2 { name="SCLCBam"; version="1.20.0"; sha256="17xmaazysshijcdpchk6aab99kdiinyw2mb7r7v3w1043yl3a6dj"; depends=[]; }; + SNAData = derive2 { name="SNAData"; version="1.34.0"; sha256="0fi6zdhfhdxgimm3pdn6d1q1bjk13nw1nnc7gmvlk1a4nd3j8g86"; depends=[graph]; }; + SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.24.0"; sha256="09z76j2cdqnxn6bs0sazhayfk9a7qr2j5x678hnqqpwr255jr8w3"; depends=[]; }; + SNPhoodData = derive2 { name="SNPhoodData"; version="1.18.0"; sha256="1abiqn5p1cr4wrzakpvqirhj40g9airav1vi0n568832mqclsdwk"; depends=[]; }; + SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.20.0"; sha256="172hgkh6s4lj9hdh5wr6k12w2nr60g2q5ra0r5d06vs96ha8cwzl"; depends=[]; }; + Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.16.0"; sha256="1liw2d0x1yf7jdizarb98f5jaw0a721qqhxgbva7923rmn9bh05q"; depends=[]; }; + SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.0.0"; sha256="17hxan83zzya08csandpa0xrhla0wkhii8mc19yrlzqbnl5r5v1g"; depends=[AnnotationHub BiocFileCache ExperimentHub MultiAssayExperiment rappdirs]; }; + SomatiCAData = derive2 { name="SomatiCAData"; version="1.26.0"; sha256="1sz2qdn23dnr5hbif6yv0r19b7db9v5vs9sqrjj0nid93lqxmzqy"; depends=[]; }; + SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.24.0"; sha256="1innxq39svlrw8v3qnnr3crf49jmj7pvymbh3bp14hhx12ylrvk5"; depends=[exomeCopy GenomicRanges IRanges S4Vectors stringr]; }; + SpikeIn = derive2 { name="SpikeIn"; version="1.30.0"; sha256="0xnb93q0wrd41x2lgmcraphz27v5ric9qn1cs2459f83hsl3ngj2"; depends=[affy]; }; + SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.28.0"; sha256="0a42i0kixgxixr1fbm0vnzl08yhaxl2zrxkq9pvwsid6sjxnzbbg"; depends=[affy Biobase]; }; + TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.24.0"; sha256="0h5rpwzqwa982m32kasyaj676hpd4pv0n4wba328m9shwcx0zlqi"; depends=[Rsamtools xtable]; }; + TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.24.0"; sha256="18z3pn5x00kdhg085ai7r592n6gpbaib6g1i3q1859v82hnn8k3l"; depends=[]; }; + TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.12.0"; sha256="1185s7dmdn3xhdip1q2vilqhvckqszywsrfk47yrqaacc0mbnbgk"; depends=[SummarizedExperiment]; }; + TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.8.0"; sha256="060kxhrw00c3mj2fdp49zws7dz9wqc2p96zv1ikvnccqfd7f2ps8"; depends=[]; }; + TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.8.0"; sha256="0jyhk5arr73pvcvqfra9rvm7pwhbgr67ls9nszkm8jxhb8jvzv5l"; depends=[Biobase]; }; + TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.8.0"; sha256="1a7kawwihqvh06p3l9yfv9d05rv1nwh8vfpmm6553ddmxpkfmfa3"; depends=[Biobase]; }; + TENxBUSData = derive2 { name="TENxBUSData"; version="1.2.1"; sha256="0cg1xii1zfilw64nkvfs0gsgys3aabnvkhhbkfdvqahp2ayhi7lb"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; + TENxBrainData = derive2 { name="TENxBrainData"; version="1.8.0"; sha256="1mx07z95s29d02j0imqmvhf9v15j8qplggp233k3c6dgxlxbd8rg"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.6.0"; sha256="1ivps0sbw59ha8vha1wnnz92srnvp1pvybysi4fjb7w08xs0iyif"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.6.0"; sha256="1nnwm0irg6qy8jkldw42w3yvk9jmpy0gm4ymiw127wv6kfvqcb67"; depends=[ExperimentHub]; }; + TargetScoreData = derive2 { name="TargetScoreData"; version="1.24.0"; sha256="1p554n42c8vsva09mwcvvvgr0xbmyyayv3shq3dr9lbh6q3k9vwi"; depends=[]; }; + TargetSearchData = derive2 { name="TargetSearchData"; version="1.26.0"; sha256="16dai2fg0m6mya001i7m2z8bg6sf3ny3lqwpdlkm3panxh3w29v0"; depends=[]; }; + TimerQuant = derive2 { name="TimerQuant"; version="1.18.0"; sha256="06qr5byggasym0k9hv5f992swf59951hg2z9p9d1gkvjgp5i8hl0"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; + VariantToolsData = derive2 { name="VariantToolsData"; version="1.12.0"; sha256="0jj2gwyxj8rsw2wcz0s7zniry9kylch4mzi1y31mhh18f3wwc36i"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; + WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.20.0"; sha256="0g6ykbx3kyf4misa2k7wsikdfjxk8lachfkhc22iz7xlglnlmw0p"; depends=[]; }; + WGSmapp = derive2 { name="WGSmapp"; version="1.0.0"; sha256="0y3ar2mrsqbryd5m3nampfc6jz11ilnfgfkydz1nwr01kblngzak"; depends=[GenomicRanges]; }; + XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.26.0"; sha256="106wdzm446yzcnxgkfpm1mfcmn1glbwal9ha2bdn9blmhks2bj2x"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; + adductData = derive2 { name="adductData"; version="1.4.0"; sha256="1s807spkvzmhqcjcdv2njydip3z3d0zk1h3cp860qyqni90q754w"; depends=[AnnotationHub ExperimentHub]; }; + affycompData = derive2 { name="affycompData"; version="1.26.0"; sha256="0sjhvh1sf2l6ik1qa679mkj2flw5gn1ysnmbph9806368s42yb2s"; depends=[affycomp Biobase]; }; + affydata = derive2 { name="affydata"; version="1.36.0"; sha256="1dnf6a04q05sxm2ki53nhk2jg4w7k8i40faligckai0nr2xikp8l"; depends=[affy]; }; + airway = derive2 { name="airway"; version="1.8.0"; sha256="1h93izcpw2lqljaw158bw8n1mqkxrblrsz5nwiix4ssksx062daa"; depends=[SummarizedExperiment]; }; + alpineData = derive2 { name="alpineData"; version="1.14.0"; sha256="1rzafq05m4fymwdzl5i5i0svpq4f36gg1wpcdcslrpxc7pc47izx"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; + antiProfilesData = derive2 { name="antiProfilesData"; version="1.24.0"; sha256="1rrw4s2nzyqf6fryl356nn0928lqrd0igknqjsv1v05iqkimr81j"; depends=[Biobase]; }; + aracne_networks = derive2 { name="aracne.networks"; version="1.14.0"; sha256="1463x7qn32vhv3sglz6zdg5ld4fna6f6sgbggrljj5965ad836vq"; depends=[viper]; }; + bcellViper = derive2 { name="bcellViper"; version="1.24.0"; sha256="15sjqfxggvh937c4w7rw7wnywb5876809kj4amv7vi0sg868jiv0"; depends=[Biobase]; }; + beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.26.0"; sha256="1r678xrzb6i6j8fr75b2pf9vns9w4kwicg9kf513a7a83b075n4k"; depends=[beadarray Biobase]; }; + benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.2.0"; sha256="0yjvb8qih0fpp93pf5w3ilrpsm1vzqhmcjhb1sqd7875jpas9a4d"; depends=[ExperimentHub SummarizedExperiment]; }; + beta7 = derive2 { name="beta7"; version="1.26.0"; sha256="1nf8wds7mksjyyrfvvs3q501mm5van7jbsfxyna27bv0dmbcv49c"; depends=[marray]; }; + biotmleData = derive2 { name="biotmleData"; version="1.12.0"; sha256="1bdn1j4f6cfpncbgnzmrgb1jnffn5pxjznj8nyjdzyapgz6gy4d9"; depends=[]; }; + biscuiteerData = derive2 { name="biscuiteerData"; version="1.2.0"; sha256="0dd4kym1gxkjlf1s4lcjsxikvanzbnvqphxin9zb3j99wi7h98f8"; depends=[AnnotationHub curl ExperimentHub]; }; + bladderbatch = derive2 { name="bladderbatch"; version="1.26.0"; sha256="1xlqi32a5b84m31xn9x8sgrsdprylk8w2prbdn2y2lj75vyqislw"; depends=[Biobase]; }; + blimaTestingData = derive2 { name="blimaTestingData"; version="1.8.0"; sha256="1ibpmbyhnliiwllwdpysl1897c93l98zdi4283174r6q1w9iwnwk"; depends=[]; }; + bodymapRat = derive2 { name="bodymapRat"; version="1.4.0"; sha256="1dfrm68ysqm4z90zrvxas1mf53anfrk6mji9823088lj8haabxvn"; depends=[ExperimentHub SummarizedExperiment]; }; + brainImageRdata = derive2 { name="brainImageRdata"; version="1.6.0"; sha256="0146rn8hmnmvfbnmqwr20wx76k3m6qii5rsqdqmcf420zhdfasnv"; depends=[ExperimentHub]; }; + breakpointRdata = derive2 { name="breakpointRdata"; version="1.6.0"; sha256="0s96amrb0z4zz1xg3dd2wf9yir3g9xlj43sbfgcffa02hr2lvql0"; depends=[]; }; + breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.26.0"; sha256="1bi9522c64yngil2153qsd5la6lmn41992vlzpcadq79c2gdm5sz"; depends=[]; }; + breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.26.0"; sha256="0lkwgp8qwd869bc7wz5vx11fjk48516waf5d5r79ch7qzic50yqa"; depends=[]; }; + breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.26.0"; sha256="189q6qggq08mcvj0ail7vilsiyirxwkvwhfwwrzms6lg9bdav0a5"; depends=[]; }; + breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.26.0"; sha256="1s6zdhdnrigfnhyjajb9m1hsi3ggg7rs3wvyfxhzdbg5v9jwlkgx"; depends=[]; }; + breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.26.0"; sha256="1ax8czbxh7kid1kb1p6skkiprqm1pjpyijnci4sp6pvldna5ksm9"; depends=[]; }; + breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.26.0"; sha256="0a147jqwkwxlcf4id75i0wpz3mp9ynhvpmyw6kq7ksagk05zv2iy"; depends=[]; }; + brgedata = derive2 { name="brgedata"; version="1.10.0"; sha256="1asi6867lp17gh3j6dg1d11mgk9mkym4s00hpfscp9zlayzqaahp"; depends=[Biobase SummarizedExperiment]; }; + bronchialIL13 = derive2 { name="bronchialIL13"; version="1.26.0"; sha256="11im58z1fahy2r832r00wymjbf03hbafslzc5hicd53jgscviks0"; depends=[affy]; }; + bsseqData = derive2 { name="bsseqData"; version="0.26.0"; sha256="0nzfk1q35hh2k2wcsfsyvhr8n5b7rzvgqpk4ysakm7x0n3yllvr1"; depends=[bsseq]; }; + cMap2data = derive2 { name="cMap2data"; version="1.24.0"; sha256="02m7r1ixmwr119xx58j7xdmrac8banm833hg1q2jclzlxqkby1iq"; depends=[]; }; + cancerdata = derive2 { name="cancerdata"; version="1.26.0"; sha256="1l0vdrfxi452p79f40gkj88ikmlb0d764hz9iyfz5gcqimn4ziiw"; depends=[Biobase]; }; + ccTutorial = derive2 { name="ccTutorial"; version="1.26.0"; sha256="13b7b2h0viyyrhqfr9marjpy9svbqvnfkz0hfxizg267106kvdpr"; depends=[affy Biobase Ringo topGO]; }; + ccdata = derive2 { name="ccdata"; version="1.14.0"; sha256="16hzrzrq61rn0946rv7ikk5b2xy2vc7s67jsv5wlvj19s58z5ki9"; depends=[]; }; + celarefData = derive2 { name="celarefData"; version="1.6.0"; sha256="0j7w6z56snrvlxpp5f47s71pmfk5xbp9fjl5sdkvas04979004if"; depends=[]; }; + ceu1kg = derive2 { name="ceu1kg"; version="0.26.0"; sha256="0ll5chmqcdlj99pqiy5mdlj46igb7xkvqj8hn32m4rxx60wjkki1"; depends=[Biobase GGBase GGtools]; }; + ceu1kgv = derive2 { name="ceu1kgv"; version="0.30.0"; sha256="0hrspymdgmck1nack5bc9lpkdcbp2mmh4w64xmyppw2znzknwd62"; depends=[Biobase GGBase]; }; + ceuhm3 = derive2 { name="ceuhm3"; version="0.26.0"; sha256="17gkhk8z1hd6grsbqf4m7s4avnl7jn3zpmg4zh5fz6s890k0w6p8"; depends=[Biobase GGBase GGtools]; }; + cgdv17 = derive2 { name="cgdv17"; version="0.26.0"; sha256="0vlv33kpimlpms14c027z2h5fwavwkdk0sz4yr4wk3mr0sdcblyv"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors VariantAnnotation]; }; + chipenrich_data = derive2 { name="chipenrich.data"; version="2.12.0"; sha256="1ni6lrd5pr2pz6wkf7f8b9vzsiahnn266y21rnxgr2avvdmbzn46"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; + chipseqDBData = derive2 { name="chipseqDBData"; version="1.4.0"; sha256="0q5d20zhr0zdba18afbladrw4qn5vifkdpxi10xg3a50b3i0x5y2"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; + chromstaRData = derive2 { name="chromstaRData"; version="1.14.0"; sha256="0if9qiclyyf1jzf3fvj2kn9qs3xisi7py0vy24qqxp3wfahmnd1r"; depends=[]; }; + cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.24.0"; sha256="03xi5zxrmcwpnacay0j5v9fw4m3jndifyxnpc6dbv5vs64yilnqp"; depends=[cnvGSA]; }; + colonCA = derive2 { name="colonCA"; version="1.30.0"; sha256="0m039gz0qic38zpmmjahbfn5yqh76win0pn2492gpr79z7jglspw"; depends=[Biobase]; }; + curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.0.0"; sha256="062nkhxscs7kvdy9aa0l6ygpjchjvjr65myabdbpn1kd6ixbhk00"; depends=[]; }; + curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.4.0"; sha256="1sqg4wjmr17fyv94z3gyvxvvjjpys8y89k5ihmlk6l8v995vk1wd"; depends=[ExperimentHub SummarizedExperiment]; }; + curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.4.0"; sha256="1arjh69ag7n8gqzpl61i9ibn0gkdl002a8rkczvp20w4fdzlz02l"; depends=[SummarizedExperiment]; }; + curatedBladderData = derive2 { name="curatedBladderData"; version="1.24.0"; sha256="0j4gssv9wd5rzsx4pbhsjciy5fc87b9hhg8cia6cliyy33fg21gz"; depends=[affy]; }; + curatedBreastData = derive2 { name="curatedBreastData"; version="2.16.0"; sha256="0sahjrgq9b77xki5l51pz25ky2g13m31q7b3jc6jvggz9xmx9vyy"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; + curatedCRCData = derive2 { name="curatedCRCData"; version="2.20.0"; sha256="0bcfa5w6sqabz35npl2vmrj35ymgciiqkcgjhplm0ngimsm9f0wn"; depends=[BiocGenerics nlme]; }; + curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="1.18.2"; sha256="02m06scv1wxvh858bpxwlvwz4lf0qmvd8246axx65d2ln5fkvrc9"; depends=[AnnotationHub Biobase dplyr ExperimentHub magrittr S4Vectors tidyr]; }; + curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.26.0"; sha256="0wvpbagh9v1lyc9rsvymzy38r18g23yajvis1pj0rl7wa0zk2p4x"; depends=[affy BiocGenerics]; }; + curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.10.0"; sha256="0f8ariq3c0xh3w1gcfp8vgmkmlx3ybfry215flq01cc523pgrka7"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; + davidTiling = derive2 { name="davidTiling"; version="1.28.0"; sha256="0cqkz6rlkk2a3fsaa736s731lb3mdvpqzd6ywff2l1wkdza7n3ha"; depends=[Biobase GO_db tilingArray]; }; + depmap = derive2 { name="depmap"; version="1.2.0"; sha256="0ymdfkddrl3rbini83528x2ah8lvlvy0ard9m303dkpg5b90axim"; depends=[AnnotationHub dplyr ExperimentHub]; }; + derfinderData = derive2 { name="derfinderData"; version="2.6.0"; sha256="1kbdwwdn7ykrdm36bqd8hnj0rw9ikcnxwg0w1xdc5caqmxsg1w8h"; depends=[]; }; + diffloopdata = derive2 { name="diffloopdata"; version="1.16.0"; sha256="03rl0ffl9103zi3mk028l79vhlpnlybx0hnl8x9fsxnqkx1rkj32"; depends=[]; }; + diggitdata = derive2 { name="diggitdata"; version="1.20.0"; sha256="0wb6g9q5m2cjnxnpz2aralridmsdmd70lp1iwszdl6qc2634c2bc"; depends=[Biobase viper]; }; + dorothea = derive2 { name="dorothea"; version="1.0.0"; sha256="0c8bp0fxqf2kwi196al34a4pc78y6v0lchrjw0jn29cbihs2yjax"; depends=[bcellViper dplyr magrittr]; }; + dressCheck = derive2 { name="dressCheck"; version="0.26.0"; sha256="0sa5d4isv3ni6bdq1i2yskycq357272flj2wbravy4zi7xrsk7iw"; depends=[Biobase]; }; + dsQTL = derive2 { name="dsQTL"; version="0.26.0"; sha256="1pkwppfkfacf8xxmdflckql8x2n6abvfdvwly1va69288ibxy1xf"; depends=[Biobase GGBase SummarizedExperiment]; }; + dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.28.0"; sha256="1l8628150dic4l48r8gqasxpil6552d3h9imysvznkq13j5j48wa"; depends=[GEOquery marray]; }; + ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.28.0"; sha256="14wwfbpdcd6ghv57hv5rfci9y3sgk0lvl2w9flss625bz50bil6c"; depends=[affy ecolicdf]; }; + estrogen = derive2 { name="estrogen"; version="1.34.0"; sha256="1iqzw2ldmg4hqlwf94b8jczj83mix2znp6widjkfq5509wygq2dh"; depends=[]; }; + etec16s = derive2 { name="etec16s"; version="1.16.0"; sha256="0b714kg0chq2kf7x16j6kaaqfmr5lka030dx2k0r8fr6318h5h3i"; depends=[Biobase metagenomeSeq]; }; + faahKO = derive2 { name="faahKO"; version="1.28.0"; sha256="180viida7hd5xqm7h1n0chcpmpd8d5rjrkbjqpk2m2dzsqip9v36"; depends=[xcms]; }; + fabiaData = derive2 { name="fabiaData"; version="1.26.0"; sha256="13ips2phn9r1y3c4lqcpcrwkh37b9b4rpikmnyyafcvs30283vad"; depends=[Biobase]; }; + facsDorit = derive2 { name="facsDorit"; version="1.30.0"; sha256="1s46wk9rzzn89qvi4bz9ayb5swysg1y9rnwyqrfirq3s8wlx6bqv"; depends=[prada]; }; + ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.26.0"; sha256="03sxg8vhvqq96hljv115ngz4arbnjkgz7z1fgzzqckv98v699ah3"; depends=[lumi]; }; + fibroEset = derive2 { name="fibroEset"; version="1.30.0"; sha256="0v0d0v31yrsakln1kq72c1imlyh3hvi6y76qr1v2bsxn607kjab2"; depends=[Biobase]; }; + fission = derive2 { name="fission"; version="1.8.0"; sha256="0f20h8bx9gsz93lzfk18558r7nrdk0kakjv7kc2imz2g9sk97wki"; depends=[SummarizedExperiment]; }; + flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.24.0"; sha256="1n4aix1s0aq8va0b22s4crhj0v7gv4yw42qfq51sk3r4ym05nixp"; depends=[flowCore]; }; + flowPloidyData = derive2 { name="flowPloidyData"; version="1.14.0"; sha256="1rqa38p3gwackzac2zjligbckplnqm6vrva0qny68c33kzpkrlay"; depends=[]; }; + flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.0.0"; sha256="0nwbscj298jdnv8wn8863jpj3hps1p2ndfxr5h4dgsjn0bn4cfm1"; depends=[]; }; + frmaExampleData = derive2 { name="frmaExampleData"; version="1.24.0"; sha256="12yfl9qx9n59skfavzlbdfxd1xjwlwf1q3ssbj6fs0c0dvfpfwhn"; depends=[]; }; + furrowSeg = derive2 { name="furrowSeg"; version="1.16.0"; sha256="02y8npnh9b5dbykivhvncd50kq0wvca04jljqynlby1qdvd3ywxj"; depends=[abind dplyr EBImage locfit tiff]; }; + gageData = derive2 { name="gageData"; version="2.26.0"; sha256="13l6hb7a0aqvdgd3lxq8zslw1srgvk9xkyf0r8qc4jygyrk1hcsv"; depends=[]; }; + gaschYHS = derive2 { name="gaschYHS"; version="1.26.0"; sha256="05zc0iddwzbzai29mhp0gh8an30dz9yb24p0kgi1f9ma05w2qvbm"; depends=[Biobase]; }; + gatingMLData = derive2 { name="gatingMLData"; version="2.28.0"; sha256="0bbyn9sx51hnsklyqy6p3x0wsaj05pgsmaqfnskadg4gmisds0v9"; depends=[]; }; + gcspikelite = derive2 { name="gcspikelite"; version="1.26.0"; sha256="11bfn34l8fw0jsl9vy2cvv9nk5ha6ribwksr0lqmiv3k78x4vnlq"; depends=[]; }; + geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.24.0"; sha256="19d85x6wqwrbh3hv61qynxy0g7n9y07jr127n9h3rjhh49h0i10k"; depends=[GenomicFeatures rtracklayer]; }; + genomationData = derive2 { name="genomationData"; version="1.20.0"; sha256="109z4sd82w0r5ncw46y4s53r9m666pc55ih79sifglbr3c8g6gp4"; depends=[]; }; + geuvPack = derive2 { name="geuvPack"; version="1.20.0"; sha256="194r713sd5bhkbn3wfqfzh8a65q13b9jphgn8yxylnpk7vhqfiki"; depends=[SummarizedExperiment]; }; + geuvStore2 = derive2 { name="geuvStore2"; version="1.18.0"; sha256="0m6jsgh2jd926v5q436affk3bb4smxmagpa23aghzlm997vz936h"; depends=[BatchJobs GenomicRanges gQTLBase]; }; + golubEsets = derive2 { name="golubEsets"; version="1.30.0"; sha256="1xqi93b0hvmm9hfmwfzhgjz8sixs6zgb6ii1pv50892r804644d1"; depends=[Biobase]; }; + gpaExample = derive2 { name="gpaExample"; version="1.0.0"; sha256="1cgp4a02rq8afijg8gib628vvvcj9285f9x6ww1njrggs4x8s0i6"; depends=[]; }; + grndata = derive2 { name="grndata"; version="1.20.0"; sha256="1lk8pbqsgqpa2fxdz0inihifi5g8cgbziqclkghj4f0c0f8nv5rz"; depends=[]; }; + gskb = derive2 { name="gskb"; version="1.20.0"; sha256="1awjyghsxsdjhnb14dx8wk7j4lggqlpbvm9gsdk7jr16kjfj0wi0"; depends=[]; }; + h5vcData = derive2 { name="h5vcData"; version="2.8.0"; sha256="18bp4gydmlikbkjbyzj3kcqbb6srajlxfdzx0z50lvjgfy8ix18d"; depends=[]; }; + hapmap100khind = derive2 { name="hapmap100khind"; version="1.30.0"; sha256="0lmz6a10m4bszj0phihkq0m90agvvvlvan40ay2awig060dl0cip"; depends=[]; }; + hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.30.0"; sha256="0wqv1x4ip2d93r1wl420vpc034xk2qn7fksgk8mbq2lfzbnc48gm"; depends=[]; }; + hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.30.0"; sha256="01pddayc866c9mw7mb74nihym1cq4dgiz86liw2i3qk9n9yilv7f"; depends=[]; }; + hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.30.0"; sha256="05qbicnp3p36gi8dpjmvv71xv7cf7zf6avkg5mw9y8cfd9bqmng0"; depends=[]; }; + hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.30.0"; sha256="0q84yxfvspqnk3ak8fxpa7ibld1bmyg7vp8gdrwdjdp6f1xkmk83"; depends=[]; }; + hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.30.0"; sha256="0y5y1g4j434q9dl0893sm80z15rphhda1x1dxywi9z9y689y19dh"; depends=[]; }; + harbChIP = derive2 { name="harbChIP"; version="1.26.0"; sha256="1hqh721di5fxzhpj9a0iljzprzxlyg76z6pxgyfslmc7bccxmld7"; depends=[Biobase Biostrings IRanges]; }; + healthyFlowData = derive2 { name="healthyFlowData"; version="1.26.0"; sha256="1w7w36phhplm5qvm0s1mb7hzgw2yb5bhpkj8mdkwj623763nqxwx"; depends=[flowCore]; }; + hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.26.0"; sha256="0kvki0fz5nmwf729mx4r7a94cmg0s14qndp20z19mpcxrdp2whqs"; depends=[]; }; + hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.8.0"; sha256="174vl57gciqc4awpbkkma0dx4cv7i5cy6g18403yz5sci8xp2qyv"; depends=[Biobase]; }; + hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.26.0"; sha256="0diy6ljvhb0mwfhj3dphk868pxz7s33mq6mwjylayh4imhpakxrz"; depends=[]; }; + hgu2beta7 = derive2 { name="hgu2beta7"; version="1.28.0"; sha256="0f4kd2zmy1apxl8b7axjkcwc5l8x0nf9d5c688cszlnxlh8np4gb"; depends=[]; }; + hmyriB36 = derive2 { name="hmyriB36"; version="1.24.0"; sha256="1gh0jhnlljnbzsqrvz4ssrbsv572fivwkg78dkiqrbrx9vjab6g7"; depends=[Biobase GGBase]; }; + humanStemCell = derive2 { name="humanStemCell"; version="0.28.0"; sha256="0fsa92p8z8df3db8chpld22c9yn78cwdn72n47fy5l51caw0v6z9"; depends=[Biobase hgu133plus2_db]; }; + kidpack = derive2 { name="kidpack"; version="1.30.0"; sha256="0kpa3q9plvskynlww6fnk6mv34z5p900wgx8hxkgdknxmx5ihswn"; depends=[Biobase]; }; + leeBamViews = derive2 { name="leeBamViews"; version="1.24.0"; sha256="0l6cyf4a1b93pqlhlvi98yhdjby4rfcmdxvrrn8fpy5w8mjwmv4x"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; + leukemiasEset = derive2 { name="leukemiasEset"; version="1.24.0"; sha256="05jw1l8bky88hc2gkrs032a51p07kfcwplfw2s4qn14qm90cq680"; depends=[Biobase]; }; + lumiBarnes = derive2 { name="lumiBarnes"; version="1.28.0"; sha256="1k17yy1hy0x5v8ywv4w6vd1kzx0z9mcn0c26sk2qzzmcr2hnx7xj"; depends=[Biobase lumi]; }; + lungExpression = derive2 { name="lungExpression"; version="0.26.0"; sha256="0ryidn0kyxj5ms3yzhln9jizx3vpmxb1x60hr11v3435pw1ihra1"; depends=[Biobase]; }; + lydata = derive2 { name="lydata"; version="1.14.0"; sha256="1hcgkvgbs6rmj1a874hs4j3wdq9gc4pmfg4i6fhik4ykjv5r583j"; depends=[]; }; + mAPKLData = derive2 { name="mAPKLData"; version="1.20.0"; sha256="1psg6jsvlkna1dc5pjzkzy4g3cvxxl0fwzgpbfmhd4wjms4v42xa"; depends=[]; }; + mCSEAdata = derive2 { name="mCSEAdata"; version="1.8.0"; sha256="1yspzyl3cg4i6x42vi9bk0cb74sxcb001pvm3hl3kcz52pqbabdm"; depends=[]; }; + macrophage = derive2 { name="macrophage"; version="1.4.0"; sha256="0q9k2xbp7g1cixain59p244afnhia5ps52fdsnsyc6ca380vhrks"; depends=[]; }; + mammaPrintData = derive2 { name="mammaPrintData"; version="1.24.0"; sha256="1k2v131sqnglffp9w1s76g4i246xghw59l6rbgzq0k6ala58dyzi"; depends=[]; }; + maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.32.0"; sha256="01015f7f1fa56pfy78c9zjxszc379rsqjxkbhwx6bzr1d0pvfq0c"; depends=[]; }; + mcsurvdata = derive2 { name="mcsurvdata"; version="1.6.0"; sha256="04c7z4nal5brgjc3ap3ycgyfws6saxkxdzid2rqzb1h13zk42ahb"; depends=[AnnotationHub Biobase ExperimentHub]; }; + metaMSdata = derive2 { name="metaMSdata"; version="1.24.0"; sha256="0ha2sl75xk8xf3d6cw5hdiqad0ymiva3maq0cn3c5mgv083dj6xr"; depends=[]; }; + methyvimData = derive2 { name="methyvimData"; version="1.10.0"; sha256="0jxpahqxsbnk3spmc4nm31kxxyvai62mlh2ihfkfcslmrccf1k5a"; depends=[minfi]; }; + miRNATarget = derive2 { name="miRNATarget"; version="1.26.0"; sha256="12bp0s6djpp262l1vlyg9sn01yzydz7b0hf183wmnr8568n91dln"; depends=[Biobase]; }; + miRcompData = derive2 { name="miRcompData"; version="1.18.0"; sha256="1jw46vwibiggwdi36a164ib1v04hibrxyxp63qsmqxn38rz7g8fs"; depends=[]; }; + microRNAome = derive2 { name="microRNAome"; version="1.10.0"; sha256="16v2p376v8aawb31ss6mmcf1mip0hyj3740jd6r8w3dvkvjs877p"; depends=[SummarizedExperiment]; }; + minfiData = derive2 { name="minfiData"; version="0.34.0"; sha256="0qcky2k39amjdincb3d29x8xf6sm2vn7643vvkx0jpbfqv5pn9cz"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; + minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.14.0"; sha256="0c7i4830x41wgg0qj3nal6s6am0wnpr3hgyb8i14fip0168xdyfp"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; + minionSummaryData = derive2 { name="minionSummaryData"; version="1.18.0"; sha256="01j2wh9bl8v4xm8gsv620f6idrwpycs81kxgq4n4y9padqm12d1a"; depends=[]; }; + mitoODEdata = derive2 { name="mitoODEdata"; version="1.24.1"; sha256="1nsf0ydpb9gwsl8907srgscsaicpcvashy9x4akadlblk5f1sm6w"; depends=[]; }; + mosaicsExample = derive2 { name="mosaicsExample"; version="1.26.0"; sha256="094nvpimnz8i6qscbzzx63zkq3vwh4bahd9wh37jc66m33nx6xna"; depends=[]; }; + mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.26.0"; sha256="1ni7pz1417a05dzwh51212g8dza828wd2gbvzxjdwamlsadqzq7v"; depends=[]; }; + msPurityData = derive2 { name="msPurityData"; version="1.16.0"; sha256="1vv4cifbr3rc13xrjfb0vbrkrinr2kwci8xcyjzwcbpch849izai"; depends=[]; }; + msd16s = derive2 { name="msd16s"; version="1.8.0"; sha256="0cwyd01mxy4h8irgg7r98b66f2cgnir9yh7zdbplrd4jrm3kdjjk"; depends=[Biobase metagenomeSeq]; }; + msdata = derive2 { name="msdata"; version="0.28.0"; sha256="1grhjfb7bchvm6y9yx7hj9ssj8jsyhgvl1imr8zpx4zmsryvsy8m"; depends=[]; }; + msqc1 = derive2 { name="msqc1"; version="1.16.0"; sha256="0qfyds4wvbw3c7zhwnmq24cx9jxrlsvzh4mnks09md70vliwbiy9"; depends=[lattice]; }; + mtbls2 = derive2 { name="mtbls2"; version="1.18.0"; sha256="0fnz9i66y7y9zksxkjqnrk8p4pq5vdv8bnkpr03imsr4jdbvr882"; depends=[]; }; + muscData = derive2 { name="muscData"; version="1.2.0"; sha256="1w3r42al6nl2hi6dkg8mp9kxpif15nrhap65b3mnlpncf5nd8ck4"; depends=[ExperimentHub SingleCellExperiment]; }; + mvoutData = derive2 { name="mvoutData"; version="1.24.0"; sha256="0kb0kj1cklyc7z0kx4vm8s16sp0xcichdwdadjq9r8yckxwy9qfv"; depends=[affy Biobase lumi]; }; + nanotubes = derive2 { name="nanotubes"; version="1.4.0"; sha256="0dyxi22c5mzk97v8rg5mlwi9ikcd2x178s5phzkpnbzd0sl3n0yf"; depends=[]; }; + netDx_examples = derive2 { name="netDx.examples"; version="0.99.3"; sha256="0m9wq6a0i0rjx5jchkgbpl6aypsvcnzl7mnqqzvqzk7p1jf3gc0f"; depends=[]; }; + oct4 = derive2 { name="oct4"; version="1.4.0"; sha256="1xy1gv42b8z3bbghzakfr4y6kqccy3n7x8r0b6r9nznji1qx5n4h"; depends=[]; }; + optimalFlowData = derive2 { name="optimalFlowData"; version="1.0.0"; sha256="0akka98nq5jk16k9472lnwjj6bgygng71x2l29ihykzn1ml9wyrp"; depends=[]; }; + pRolocdata = derive2 { name="pRolocdata"; version="1.26.0"; sha256="16w75i2bj4qjidzxx1gnlsxc68iv4kp3sj61c1r1lli4dzbcss7z"; depends=[Biobase MSnbase]; }; + parathyroidSE = derive2 { name="parathyroidSE"; version="1.26.0"; sha256="1bd6cmpfsk4216drziflki4i3ys7jl2bb0jbsc4727zawxa9xqh8"; depends=[SummarizedExperiment]; }; + pasilla = derive2 { name="pasilla"; version="1.16.0"; sha256="08limpq4hjri0d7s7sb0m4zhla4gaswmk0hmrnpq0i3bpdw3cp5c"; depends=[]; }; + pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.26.0"; sha256="1rb67ba9lhavmg4ffc5vy37fl7a47c8zq0y9h3ra7wx10hgrwxgs"; depends=[]; }; + pathprintGEOData = derive2 { name="pathprintGEOData"; version="1.18.0"; sha256="07zahrfaw6jdb5yc33pj07shc1x5ddvszxvd9228iizhjcy0sp2m"; depends=[]; }; + pcaGoPromoter_Hs_hg19 = derive2 { name="pcaGoPromoter.Hs.hg19"; version="1.24.0"; sha256="1vgxwfwrx8ar32r9axbvs22vvswq0hx1xmxg4y03i4l49jjam0id"; depends=[]; }; + pcaGoPromoter_Mm_mm9 = derive2 { name="pcaGoPromoter.Mm.mm9"; version="1.24.0"; sha256="0vvrs29v8vgiph6dp0zwny9z1wyak34pafmnmcsilki9nv62amrp"; depends=[]; }; + pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.24.0"; sha256="1mqykfd8xkd254pa18n94z2ypk1rvh4g7sx54igz0kv7d0hc2rca"; depends=[]; }; + pcxnData = derive2 { name="pcxnData"; version="2.10.0"; sha256="0dsagapcrad7k5ar48rg43vslxvrw1rwlfz135sgqvy81c97df1f"; depends=[]; }; + pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.26.0"; sha256="1hd8qy82ks584z504m8r3gq4dxi19k8qw1d8vlfd8k6iis6wa82f"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pepDat = derive2 { name="pepDat"; version="1.8.0"; sha256="1fmrgma2xl2v6g3nda6kiizgw6lxfh0bi9vfqyarg08mj2m7yipy"; depends=[GenomicRanges]; }; + plasFIA = derive2 { name="plasFIA"; version="1.16.0"; sha256="0bnwappr5n0db0595swl4f35cd31j3a2kzp1xmyddxm3xwr364ps"; depends=[proFIA]; }; + ppiData = derive2 { name="ppiData"; version="0.26.0"; sha256="13ks4rpm25bnbhqyfqqw27af6px0jwr2mn16fid3j4lg7dr5c0qs"; depends=[AnnotationDbi graph]; }; + prebsdata = derive2 { name="prebsdata"; version="1.24.0"; sha256="0i7szry1chh8x7p1xynnzc9m917z7p0w031a6b5f6ffcih6p3g8s"; depends=[]; }; + prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.16.0"; sha256="0mw6hna1avp7ihbyw75z157g7ssxwbigglhvcx52aj37bnlw82r2"; depends=[Biobase]; }; + prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.16.0"; sha256="1kv8a53gkibr320xq5h26v7ilw5pjqcrsp2h18wqaw0cyi3s0wn8"; depends=[Biobase]; }; + prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.16.0"; sha256="10cbzs3azz4hxpxhjaf4mgqpwf3b46b60arm2z2fyf5hgmxvh1ly"; depends=[Biobase]; }; + prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.16.0"; sha256="14axk66vb1kkis27qg8nnq1ssdxxlqazvz574vjxrs31pwlawpiv"; depends=[Biobase]; }; + prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.16.0"; sha256="0cib5p853rz5j3l9x752h62fsyrvv1i61v6nnacrmbzi4k9b1w68"; depends=[Biobase]; }; + pumadata = derive2 { name="pumadata"; version="2.24.0"; sha256="1jal8j50z6lc9qvydnlsklvghp2zc24zk3g2lbsn0k1ahrsxhx3q"; depends=[Biobase oligo puma]; }; + pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.2.0"; sha256="02aq2sqilz11sknbwkdfca7gw95i4x5mf2n477kzn09dhiplq1l9"; depends=[ExperimentHub]; }; + qPLEXdata = derive2 { name="qPLEXdata"; version="1.6.0"; sha256="16jzij7cmiagxb0cp2pyna8s424kx3gz55b6v2qsssm9apy77bg3"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; + rRDPData = derive2 { name="rRDPData"; version="1.8.0"; sha256="09n5289fk5mq1q9skfzmg4rxq66l68k5rv72pz256p7k5xslxx2y"; depends=[rRDP]; }; + rcellminerData = derive2 { name="rcellminerData"; version="2.10.0"; sha256="0v8aj14pwjm60rvnk9nsp02m3vavhn6l49ny0k0rmdrq79bvyymn"; depends=[Biobase]; }; + restfulSEData = derive2 { name="restfulSEData"; version="1.10.0"; sha256="0l4qamp6x2g5k2bix0mlxpv344yqzz3ap80zdw4b2jgdlq9gvfgg"; depends=[ExperimentHub SummarizedExperiment]; }; + rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.26.0"; sha256="1bsv8i3xapkpga04388598slqqjwpkh9nh3vy9q4ibj14wnmcf0w"; depends=[]; }; + sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.12.0"; sha256="1v5qi6fh86snfpw4q0lqi0sznfdqv5d95a07bsdqf3g4p6saalxd"; depends=[SummarizedExperiment]; }; + scRNAseq = derive2 { name="scRNAseq"; version="2.2.0"; sha256="0hcxwaf0y7in611bnl1lawnklwy6f71g6p8ci7s7s1anzm421dqx"; depends=[BiocGenerics ExperimentHub GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scTHI_data = derive2 { name="scTHI.data"; version="1.0.0"; sha256="0wpjlyipp9d50k0mrvmgffcwxc7k3fai736scvch0pa0g6kk2pg0"; depends=[]; }; + seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.20.0"; sha256="12sqw6wi65g33can65blcdb0wf8qn91p49sxyiprq9wa5bbkmk2b"; depends=[]; }; + seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.24.0"; sha256="1y16cfrrfsn30fp4vxmlk348zlrq5m2k6kidi00gayd49l0q99g7"; depends=[]; }; + seqc = derive2 { name="seqc"; version="1.22.0"; sha256="0b9aqj9mxkxdbgrc0i010nizpl6gvna2dla817135z7zzdqic8lw"; depends=[Biobase]; }; + serumStimulation = derive2 { name="serumStimulation"; version="1.24.0"; sha256="0qx21q874k6vg8i7kwhajlhvrb6z4xlmrzrs0asd180f2vx2g2w2"; depends=[]; }; + sesameData = derive2 { name="sesameData"; version="1.6.0"; sha256="0fyiwd2sfqdyb1msm4clz8lwbxlw4dfl83kkj25xmp5hh2dh915a"; depends=[AnnotationHub curl ExperimentHub]; }; + seventyGeneData = derive2 { name="seventyGeneData"; version="1.24.0"; sha256="1rla88mcnpl0w3k0szbhzzkbc786fq67vqyqwv2aq9f4nssjw95k"; depends=[]; }; + shinyMethylData = derive2 { name="shinyMethylData"; version="1.8.0"; sha256="19wfry1xx7kvl5mrmn4pv4amlv035nl73ni58qa6s5kwxzklpavn"; depends=[]; }; + signatureSearchData = derive2 { name="signatureSearchData"; version="1.2.1"; sha256="0q5p2g3im5nyngpdfdvk4xm1fp064cgavjrx7pf1q2fkijc3m07a"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5 signatureSearch]; }; + simpIntLists = derive2 { name="simpIntLists"; version="1.24.0"; sha256="1sxscydcd43xlyxr4rn3rmjc9hmwvqzrqw40ihmkva0ld8r635n1"; depends=[]; }; + spatialLIBD = derive2 { name="spatialLIBD"; version="1.0.0"; sha256="0yx12mcrmb2g6sjnk1ajclnc0z3i2aps2snw85gyanaad5l1igq5"; depends=[AnnotationHub benchmarkme cowplot DT ExperimentHub fields ggplot2 golem IRanges plotly png Polychrome RColorBrewer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SummarizedExperiment viridisLite]; }; + spqnData = derive2 { name="spqnData"; version="1.0.0"; sha256="19sisn5l3nvz2nr400jgz5clcj0iygk17xhpsjqgswi9p43a3k9z"; depends=[SummarizedExperiment]; }; + stemHypoxia = derive2 { name="stemHypoxia"; version="1.24.0"; sha256="03kzrmdlixi31k6jfjhcn4dkm5g16rbd315ws4pqilpdwhgmrlff"; depends=[]; }; + stjudem = derive2 { name="stjudem"; version="1.28.0"; sha256="07cbpxzc78asjm41rx5nl4gyzczp7j293ih86ins31r65grwjwm3"; depends=[]; }; + synapterdata = derive2 { name="synapterdata"; version="1.26.0"; sha256="0a1k831pw0sl0blr1iy5is0s06sw4kadb30prd0h2l2z8s6ldarm"; depends=[synapter]; }; + systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.16.1"; sha256="1rjh7ki3kczfx2f5vfrmbd6gwjm0f4dpm845x79fxy4k4sfb9zq2"; depends=[BiocGenerics devtools]; }; + tartare = derive2 { name="tartare"; version="1.2.0"; sha256="0v4s0xbxqrv8syihn1ahcrak8gsyklxl3xnzfy4dmqz6bzarpcgd"; depends=[AnnotationHub ExperimentHub]; }; + tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.6.0"; sha256="06f4xi2lh8idv7h5hmrmlha71k0dxc4s07apc2lj27l2wpm5dp85"; depends=[bsseq ExperimentHub knitr]; }; + tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.26.0"; sha256="04f3wy2k884vxyij1yrivxb6jymkh2j7byh0qzmkq2gs9k2lbrka"; depends=[]; }; + tinesath1probe = derive2 { name="tinesath1probe"; version="1.26.0"; sha256="05rbyhcqp5czcnhz6rw6jii212ggpixgclik5bq0j8418mgvq4rs"; depends=[AnnotationDbi]; }; + tissueTreg = derive2 { name="tissueTreg"; version="1.8.0"; sha256="1qgn9c14hy6n79rdyzhj1baqf3wkmmc8nwdfg2aw65ccf3fr8mkb"; depends=[]; }; + tofsimsData = derive2 { name="tofsimsData"; version="1.16.0"; sha256="0wi2963il55fjmcs5r6bwhi73h96dv3j706fq42x2z9053y5vn92"; depends=[]; }; + topdownrdata = derive2 { name="topdownrdata"; version="1.10.0"; sha256="0afjn3jawalnrfd0aqa2lm56q4j5c42ah2lfrb7k6bl0a731x0yn"; depends=[topdownr]; }; + tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.26.0"; sha256="1iszm7cqx30d1nnl1l7xlqvn18kvgb6q4d1cspjnd1l8x2cf6h3d"; depends=[Biobase]; }; + tximportData = derive2 { name="tximportData"; version="1.16.0"; sha256="0vscg9qz6hf20sbaghsza1gkcch4vm0h93wwxhmsm9vnb0j9y06n"; depends=[]; }; + vulcandata = derive2 { name="vulcandata"; version="1.10.0"; sha256="1zah7palpk8b0r9nfivcf5w2sjvr27vgvazswbcs53shm056ry75"; depends=[]; }; + waveTilingData = derive2 { name="waveTilingData"; version="1.24.0"; sha256="0vx702xi32a4735pygya406wqk7ypn363mp3agb1cby0bh6p72qk"; depends=[]; }; + yeastCC = derive2 { name="yeastCC"; version="1.28.0"; sha256="1sfw59kv88mp1wf9rrib477xf9krw0crs3sikg8zpki1c2v06ihm"; depends=[Biobase]; }; + yeastExpData = derive2 { name="yeastExpData"; version="0.34.0"; sha256="00bf71za2m03njy3a0sh78x1b690nh07z6g52s52hgv35fihapk7"; depends=[graph]; }; + yeastGSData = derive2 { name="yeastGSData"; version="0.26.0"; sha256="109zl3n5cs2dmdwkgh34sqsghb6kywpg4mgr7qqf0iaisdcydix1"; depends=[]; }; + yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.24.0"; sha256="0066r4hk0fgidg0q09fq4lldkm2d889z7xjg0zlfmnhnn7jv68hf"; depends=[]; }; + yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.26.0"; sha256="0pvkrgwca7aqk833jp0d0dnz1kjhzl7zabbkaszqb659aq985z8m"; depends=[]; }; + yri1kgv = derive2 { name="yri1kgv"; version="0.30.0"; sha256="1bhw9gnr8291gyrg8bak2nzzgqgfgxvxwlcjd3v8w0a87qjrlsih"; depends=[Biobase GGBase]; }; + yriMulti = derive2 { name="yriMulti"; version="0.18.0"; sha256="049armafqigkw7b8yfi9lfy2wggib0sx42w0bi9qaq4f9lhdf6ia"; depends=[dsQTL GenomeInfoDb GenomicFiles GenomicRanges geuvPack gQTLBase Homo_sapiens MultiAssayExperiment SummarizedExperiment VariantAnnotation]; }; + zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.8.0"; sha256="0bz043yz0v78z7lildrcap9gwlqp550yclbax3lmydmkimic3hgq"; depends=[]; }; } diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index aa5e23c40c4..3fca87d57fd 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -4,1642 +4,1884 @@ # Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.8"; }; +let derive2 = derive { biocVersion = "3.11"; }; in with self; { - ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.12.0"; sha256="0bvanqmg1smyckh16m2qn7d68zq4j7n74sgsnbgms5jngbp9158v"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; }; - ABSSeq = derive2 { name="ABSSeq"; version="1.36.0"; sha256="0nfz9l6zfnxm7lgq39nyzlhgh55kdnq8rgvjx33rn1ybcn63frsw"; depends=[limma locfit]; }; - ABarray = derive2 { name="ABarray"; version="1.50.0"; sha256="06gy96ppfrix6w9vjfljsj1j0hs7k67j0awzx8hkw301z281akxs"; depends=[Biobase multtest]; }; - ACE = derive2 { name="ACE"; version="1.0.0"; sha256="0ry6yfpzi6g0qnimnpzf3iibhm2bsblhi3604hiy76hl6mz20qg8"; depends=[Biobase ggplot2 QDNAseq]; }; - ACME = derive2 { name="ACME"; version="2.38.0"; sha256="17vr6ifjnmpcclifnzpbz538bmvs4xfym6rq9ndkh9xbjfacfcdm"; depends=[Biobase BiocGenerics]; }; - ADaCGH2 = derive2 { name="ADaCGH2"; version="2.22.0"; sha256="121vjv6xbinkkl6zq7gg3pgqwk1068rh2fpd16w5c7pcslkr7n1q"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; - AGDEX = derive2 { name="AGDEX"; version="1.30.0"; sha256="0l16sfmm3j9lhyjbl0bcghhkmr77a2rrscfd3ry93z7q0gki0fw8"; depends=[Biobase GSEABase]; }; - AIMS = derive2 { name="AIMS"; version="1.14.1"; sha256="1np7r3982i3l5pwakmjmg7c326f47bsr9sbp5c5b6mhz500s5mrb"; depends=[Biobase e1071]; }; - ALDEx2 = derive2 { name="ALDEx2"; version="1.14.1"; sha256="190kcvfqhh1rg67kggdvp4pd6i3dicnqclrri0y06zrnl1c8cnlw"; depends=[BiocParallel GenomicRanges IRanges multtest S4Vectors SummarizedExperiment]; }; - AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.8.0"; sha256="0w8h7a8skvwd8ass98y8sx733hz23kczpxsbwi7cdmpx8b0wxqaq"; depends=[]; }; - ANF = derive2 { name="ANF"; version="1.4.0"; sha256="08kd394kz7x0hjb8js9xpz8f1b7rg4yzghgys0il0w1z335ivb8c"; depends=[Biobase igraph MASS RColorBrewer survival]; }; - ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.22.0"; sha256="09wfd4vqfvmkpqn9dwqly1dz4h1ckh621jbwj1dab6q4z0dfmzmd"; depends=[ARRmData]; }; - ASAFE = derive2 { name="ASAFE"; version="1.8.0"; sha256="0fjiz98cr83cjfakqq7q3prqha5gzr2k6741327jgjibmhbzpyz3"; depends=[]; }; - ASEB = derive2 { name="ASEB"; version="1.26.0"; sha256="0hyi0yncxwqydwcdmw265k6zip5ahry5yx4na3fiz1n6ivi7dxq2"; depends=[]; }; - ASGSCA = derive2 { name="ASGSCA"; version="1.16.0"; sha256="0sbyvwmjsfsrlc4gymzjb3aqs1k600w2zwnz7ih1gspgj4h6yi6l"; depends=[MASS Matrix]; }; - ASICS = derive2 { name="ASICS"; version="1.2.0"; sha256="12dq0ydn35zyjfspaxpn6k8wk8443a666v5ql4d4x5nf5vy39sk7"; depends=[BiocParallel ggplot2 gridExtra plyr quadprog ropls speaq SummarizedExperiment zoo]; }; - ASSET = derive2 { name="ASSET"; version="2.0.0"; sha256="05d788w7l6sd63xzay8yv0zxjbibm6dfm9rm8shihzn74c9wk7i9"; depends=[MASS msm rmeta]; }; - ASSIGN = derive2 { name="ASSIGN"; version="1.18.0"; sha256="1mcjz9nksk0a5jgd4wyjpf7af6c883idllkx4z14w651840sd6lr"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; - ASpli = derive2 { name="ASpli"; version="1.8.1"; sha256="1lzfmnhpy94q9rj4qsgd7hy031y62jgfs4650ijs3agzb674z1ji"; depends=[AnnotationDbi BiocGenerics BiocStyle edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rsamtools S4Vectors]; }; - ATACseqQC = derive2 { name="ATACseqQC"; version="1.6.4"; sha256="1rblvqar11fib6ip2hq0756vqi6qmncf90jw6i5p5lrgzmaxy8hn"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; - AUCell = derive2 { name="AUCell"; version="1.4.1"; sha256="1kdrs0521cyb8wlc4i3idfprrcy2f9w6kl56hfa94n0brmx62ya9"; depends=[data_table GSEABase mixtools R_utils shiny SummarizedExperiment]; }; - AffiXcan = derive2 { name="AffiXcan"; version="1.0.0"; sha256="1y07gf8f94s2i080a3bh0gam2fx2n4hmbznddkcxv7rkqgcq0adx"; depends=[BiocParallel MultiAssayExperiment SummarizedExperiment]; }; - AffyCompatible = derive2 { name="AffyCompatible"; version="1.42.0"; sha256="1vkjlpxpckmpgpf2svz866sa2pjpkhp4nc06vzpjfa8sqj5dl6n4"; depends=[Biostrings RCurl XML]; }; - AffyExpress = derive2 { name="AffyExpress"; version="1.48.0"; sha256="0zkk74dnbihc3xna4hlypyyqg3arhdsjqbc7q3dji8j9kz76kmcw"; depends=[affy limma]; }; - AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.28.0"; sha256="04lvkd8m1arzilgs0i9f8f52f3yc7himhv4igbxhvhqmz4fln3xi"; depends=[affy]; }; - AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.32.0"; sha256="0iqns14hihxr2rf4g3x47k9sniy6qsfmqq1r4jd8alcis22pl4gx"; depends=[affy affycoretools Biobase limma preprocessCore]; }; - AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.20.0"; sha256="03524lj6aw9cskbpxzjmi9g708x6p94mf26yz4j941g1d0mc3z91"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; - AnalysisPageServer = derive2 { name="AnalysisPageServer"; version="1.16.0"; sha256="088f4h87bvlckf4s4q8iy9n9d9hw9njj6y4wwr3f62xax264glj0"; depends=[Biobase graph log4r rjson]; }; - Anaquin = derive2 { name="Anaquin"; version="2.6.1"; sha256="1p01bgfx5i82x6541q3479fgwln5ri8pyqrm2hbg0hlgl25w3v4d"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; - AneuFinder = derive2 { name="AneuFinder"; version="1.10.2"; sha256="0j25syzlnyq8c8pxc5yfm6k4dzvprpna08gg6117v4k3sdmgcz4p"; depends=[AneuFinderData bamsignals Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; - AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.44.0"; sha256="1954vimkx5yb9irppq8vssq0f3yjkg36w38b9r0rqmijx1ps7x5d"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; }; - AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.6.0"; sha256="0wrr10cxjzmxx46vjzq2nsf6xlqz1sqwx4xm0sk3d77ff8wmph4x"; depends=[GenomicRanges lazyeval]; }; - AnnotationForge = derive2 { name="AnnotationForge"; version="1.24.0"; sha256="13yvhf3yskmvhs8szs6rkw93h81h5xqa3h19h91pp6nprhc8s3ll"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; - AnnotationFuncs = derive2 { name="AnnotationFuncs"; version="1.32.0"; sha256="1x11mfabh7kbp39y5rkmrpjkaawx7ab5anfmciamrmrcw1kddbss"; depends=[AnnotationDbi DBI]; }; - AnnotationHub = derive2 { name="AnnotationHub"; version="2.14.5"; sha256="0iyrxaijl4614iz5c1j53227xy2g756p3bx7hcwglcybh0k30nki"; depends=[AnnotationDbi BiocGenerics BiocManager curl httr interactiveDisplayBase RSQLite S4Vectors yaml]; }; - AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.12.0"; sha256="1xim76sxldx70h13fpkhz7fxr5rcq0gp7558w4v1iqjjzd4gp3mh"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite OrganismDbi rBiopaxParser RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; - ArrayExpress = derive2 { name="ArrayExpress"; version="1.42.0"; sha256="1a61miwsyqghmqnfnfpd7b0p712mz9cpcrq00p9b7jr8j4jd5vla"; depends=[Biobase limma oligo XML]; }; - ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.32.1"; sha256="0gv3f1ynyl52ab7zvmfi9s34ns6nwqyayh5imv6b31l92rw5ifdm"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; - ArrayTV = derive2 { name="ArrayTV"; version="1.20.0"; sha256="00azibnfaa7w9gzlx8l21l9xlkzagwb0zbd70f95wvbr5qiq9w93"; depends=[DNAcopy foreach IRanges oligoClasses S4Vectors]; }; - ArrayTools = derive2 { name="ArrayTools"; version="1.42.0"; sha256="08wklnb3wi0yzxis5nic5g7w8shn9n3j6h7vbvxjv8n92bqmc0y1"; depends=[affy Biobase limma xtable]; }; - AssessORF = derive2 { name="AssessORF"; version="1.0.2"; sha256="1kkdds8mmrnh72j267xhyfn40i5czdfwhy8zlxxlm376mxipxwgj"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; - BAC = derive2 { name="BAC"; version="1.42.0"; sha256="02r74rwsn59b1f9l3n51xh6jj5bwjcg9qp63i1jczfnglwga01av"; depends=[]; }; - BADER = derive2 { name="BADER"; version="1.20.1"; sha256="114xy8yynfncnrlsi1v44gsiq2a8jyh9q7ssb3f3rhb7rw8v0k4l"; depends=[]; }; - BAGS = derive2 { name="BAGS"; version="2.22.0"; sha256="13zlmffg8y1vrkpj62wawfzx9h68q1p42bizrwzq0cdh6jyafp3z"; depends=[Biobase breastCancerVDX]; }; - BASiCS = derive2 { name="BASiCS"; version="1.4.7"; sha256="1i0ynbc6grg28w8wsibrcfyncdipacb1lprnw11fvgkd0d429mg2"; depends=[BiocGenerics coda data_table ggplot2 KernSmooth MASS matrixStats Rcpp RcppArmadillo S4Vectors scran SingleCellExperiment SummarizedExperiment testthat]; }; - BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.12.0"; sha256="0k49ad1k3szjawsn7s97k7y2j7c03cqjcg8kmx8wmypjivjv1nv0"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; - BCRANK = derive2 { name="BCRANK"; version="1.44.0"; sha256="0zrmrc4dsz9jl0n7a0fsnmfws54hpda21sxpdqdq86qhj4ljz2nd"; depends=[Biostrings]; }; - BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.0.1"; sha256="1i4d9qk4iw8m1p590fg85qg6w55982mn41zp8bqinygx5vzvq8i2"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; - BEARscc = derive2 { name="BEARscc"; version="1.2.1"; sha256="0zhf8l789yhp4fx75s3955r0m809r9lilrd57y5qkcpya9vq8fxb"; depends=[data_table ggplot2 SingleCellExperiment]; }; - BEAT = derive2 { name="BEAT"; version="1.20.1"; sha256="1xrfgfw91fdyx2dpkbc6xvwg266ym623mbmqzlg879lh0pny0400"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; - BEclear = derive2 { name="BEclear"; version="1.14.0"; sha256="0xwmq59hbkxki573brhp2rvmn06dyysk64n4fs0vna0h729d8lhj"; depends=[BiocParallel data_table futile_logger Matrix Rdpack]; }; - BGmix = derive2 { name="BGmix"; version="1.42.0"; sha256="19n8cqdfrp8br20g7gw787w2sa3sgs41vfnic6l9gdbqphb702d1"; depends=[KernSmooth]; }; - BHC = derive2 { name="BHC"; version="1.34.0"; sha256="0wsz5ak60fd69mds7f3siv4g3hygbzwdapm6jkldnph2x3sv0f2w"; depends=[]; }; - BLMA = derive2 { name="BLMA"; version="1.6.0"; sha256="12fxafyyffgmbnqqpq15wfawa5s1lmygkjxbh08sl34a9d5g2apf"; depends=[Biobase graph GSA limma PADOG ROntoTools]; }; - BPRMeth = derive2 { name="BPRMeth"; version="1.8.1"; sha256="10dsww7bhad59i3667iy2kq40bxd34ikbl8bhbczgwm2pfp0pq9f"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; - BRAIN = derive2 { name="BRAIN"; version="1.28.1"; sha256="0nz3ci9jyckbwpvarjmc5k19qspv5xpkks83ys3zz24j1v828z2d"; depends=[Biostrings lattice PolynomF]; }; - BSgenome = derive2 { name="BSgenome"; version="1.50.0"; sha256="07z4zxx0khrc86qqvc7vxww8df9fh6pyks9ajxkc9gdqr5nn79j7"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; }; - BUMHMM = derive2 { name="BUMHMM"; version="1.6.2"; sha256="0vna27h3g86dba5l94s74vjzswds95vsxaiw51da283436g2c2pn"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; - BUS = derive2 { name="BUS"; version="1.38.0"; sha256="04lk2rq8cv6hw64ssl1v64gqg7fz2jm7hd4hwkf6q6nhivr7skpi"; depends=[infotheo minet]; }; - BUScorrect = derive2 { name="BUScorrect"; version="1.0.0"; sha256="1z841bjyyqah232dhdpm7j77irjim09h3lpy2659n5llgzr7cdi2"; depends=[gplots SummarizedExperiment]; }; - BaalChIP = derive2 { name="BaalChIP"; version="1.8.0"; sha256="0xscwx5afwcyrg8pcq3fd80m9h8mqiswyvnk3x13r020r1jgxr9l"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; - BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.10.0"; sha256="1d29hnaxyvlpdbzadnjp3x1jba1d4vis797iak81b217wrq34g1z"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.26.0"; sha256="1w7iz4nhgpx25004s9bd6mw9pm1z8dr8p7nxr6ck8wbdv19j1srp"; depends=[RCurl RJSONIO]; }; - Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.18.1"; sha256="1vn9lwyjmhs09cpagiycvcyync54xfyv7id8y597p4i8p2nk6c26"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; - BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.10.0"; sha256="03micn3sy861i7218vcx7fpzflvlh5rsgx0gnc4irzvi1xh478j9"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; - BatchQC = derive2 { name="BatchQC"; version="1.10.1"; sha256="1clsabpfnaiy0dlb0m88z72kmwslny9rinrgzcb9ljjma3yarx8q"; depends=[corpcor d3heatmap ggvis gplots knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; - BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.8.0"; sha256="0ziaciznv926xq6xjj22afcwpvz6ha0g93fgyw0y6cr4kx8mlphd"; depends=[Biobase]; }; - BayesPeak = derive2 { name="BayesPeak"; version="1.34.0"; sha256="0zj06b8r0hqjczhlryfy8z7jf799gglisv4cxszlzw4wj7byyi9x"; depends=[IRanges]; }; - BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.34.0"; sha256="0scdvj7d6gh78h6l1iv6nrd100i0n51a5dki9nvb7sk76sw06zzk"; depends=[]; }; - BgeeDB = derive2 { name="BgeeDB"; version="2.8.0"; sha256="1bhin7h1bd3wc74af1fms0ha3fy9drij26d1np27knpjs95wygiq"; depends=[Biobase data_table digest dplyr graph RCurl tidyr topGO]; }; - BiFET = derive2 { name="BiFET"; version="1.2.1"; sha256="0wxyy5y1i06x6q6s89iq9mx7lz84pxx3s20za5r3gydrwphgkc9i"; depends=[GenomicRanges poibin]; }; - BiGGR = derive2 { name="BiGGR"; version="1.18.0"; sha256="0p42i0j2sqz9kc79nh0wi7hb7r8y01cs5gczanza59q3amhjidqq"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; - BiRewire = derive2 { name="BiRewire"; version="3.14.0"; sha256="0zawg7gjywf8bsxmr33dj4x0xxy06rxcmimdmwx6flx0igf8xrx0"; depends=[igraph Matrix slam tsne]; }; - BiSeq = derive2 { name="BiSeq"; version="1.22.0"; sha256="0bvq2qn4pn632x8ppqx99ar44xh1nazn34f2jqzhg3m8mc7q5h7c"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; - BicARE = derive2 { name="BicARE"; version="1.40.0"; sha256="1dl1jv927l1ywsccmf662j3dl7m4pnkw8v1lpv47nq49pns0qqsw"; depends=[Biobase GSEABase multtest]; }; - BioCor = derive2 { name="BioCor"; version="1.6.1"; sha256="1zli54qjdywwfjzjkwhldy5ma9k6q5fn52vzzfllhwwkxba6ggn7"; depends=[BiocParallel GSEABase Matrix]; }; - BioMVCClass = derive2 { name="BioMVCClass"; version="1.50.0"; sha256="0kkjj1c0s443agk7kaa1dxda4d1bsmlkxmivz2gvf5bhnbaxjn13"; depends=[Biobase graph MVCClass Rgraphviz]; }; - BioNet = derive2 { name="BioNet"; version="1.42.0"; sha256="1hxlwh3jwgnhs8ma0ky6nk9hm2yphd0g7a7ic32vibmw1xcs8znd"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; - BioNetStat = derive2 { name="BioNetStat"; version="1.2.2"; sha256="0d2kh6bbvbxwd48c9wa6nbaj12mmgikknrsdm13r4va7218d24f5"; depends=[BiocParallel ggplot2 Hmisc igraph knitr pathview pheatmap plyr psych RColorBrewer RJSONIO shiny shinyBS whisker yaml]; }; - BioQC = derive2 { name="BioQC"; version="1.10.0"; sha256="0ip0vvq6ln8ci14g2ynxi2ipz60df6bll3ynk5dchz2zybj9l2c2"; depends=[Biobase Rcpp]; }; - BioSeqClass = derive2 { name="BioSeqClass"; version="1.40.0"; sha256="1wx8pc9xv23w1lh1lz5qgv911yh38dz9h1wa3lp1jwb5hsk1lkzv"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; }; - Biobase = derive2 { name="Biobase"; version="2.42.0"; sha256="10nr6nrkj5vlq8hsgbhbhv669z0dbpz4m3vz9k32rx1czbrrqwin"; depends=[BiocGenerics]; }; - BiocCaseStudies = derive2 { name="BiocCaseStudies"; version="1.44.0"; sha256="0sidi2rynhbxmjwd90nccgximv4c60qdw4lc6yrgfi00928xms8d"; depends=[Biobase]; }; - BiocCheck = derive2 { name="BiocCheck"; version="1.18.0"; sha256="0zamvs5jar38293ff27imvwy0ra25y64ls9z8w3q1y4jcp8p8pg7"; depends=[BiocManager biocViews codetools graph httr knitr optparse stringdist]; }; - BiocFileCache = derive2 { name="BiocFileCache"; version="1.6.0"; sha256="0ykcr9saxs0sd03ng6g6r6dzqx28rc6590vfa2jq5sq84w95lxr0"; depends=[curl DBI dbplyr dplyr httr rappdirs RSQLite]; }; - BiocGenerics = derive2 { name="BiocGenerics"; version="0.28.0"; sha256="0cvpsrhg7sn7lpqgxvqrsagv6j7xj5rafq5xdjfd8zc4gxrs5rb8"; depends=[]; }; - BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.0.0"; sha256="1fsb96acidlxwf0h65xv7fnwdi58ckmq00gmwykrlawh88wgn1ll"; depends=[BiocParallel Rcpp RcppAnnoy S4Vectors]; }; - BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.2.1"; sha256="0w0hqdyv580j2lxp0ma74swi0cmzf6z6v5zqnhss8qawmm90cc9x"; depends=[bigrquery ComplexHeatmap DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 httr IRanges magrittr rjson S4Vectors shiny SummarizedExperiment]; }; - BiocParallel = derive2 { name="BiocParallel"; version="1.16.6"; sha256="1iv2xzm6lz371z0llhcxl8hmc5jfw0hjwnf1qc8d7jk9djgcaks2"; depends=[BH futile_logger snow]; }; - BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.0.3"; sha256="0mfxcabkdxsbkk1j3kncn5jhm08b0zi1jjsz7ajkhhw7c9w85gvm"; depends=[BiocManager dplyr DT gh htmltools htmlwidgets httr igraph jsonlite readr rex rvest stringr tibble tidyr xml2]; }; - BiocSklearn = derive2 { name="BiocSklearn"; version="1.4.0"; sha256="08a1jaxhqaxqrhbgkm11isi3d83sbpfjh02nki7rbwffcjim3fy0"; depends=[BBmisc knitr reticulate SummarizedExperiment]; }; - BiocStyle = derive2 { name="BiocStyle"; version="2.10.0"; sha256="01lm8xljilj666fcl3wnw82dxkcxnlr294lddr553rm8xr5nwg31"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; - BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.8.0"; sha256="1wpihkd5j3v2qls2n67dwydvxk2mjb6cx27if5vxh7v99x3vph04"; depends=[BiocStyle bookdown devtools git2r httr knitr rmarkdown rstudioapi stringr]; }; - Biostrings = derive2 { name="Biostrings"; version="2.50.2"; sha256="16cqqc8i6gb0jcz0lizfqqxsq7g0yb0ll2s9qzmb45brp07dg8f7"; depends=[BiocGenerics IRanges S4Vectors XVector]; }; - BitSeq = derive2 { name="BitSeq"; version="1.26.1"; sha256="19z785hbgal81vywgvxbyr8k99fvyn434f1pzsh67rm8w47gnmv9"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; }; - BrainStars = derive2 { name="BrainStars"; version="1.26.0"; sha256="0ki6jm4ycm3dzdv5fhv7nflpy4zifx364mlq02fq701hjgm36fwf"; depends=[Biobase RCurl RJSONIO]; }; - BridgeDbR = derive2 { name="BridgeDbR"; version="1.16.1"; sha256="09xfcbf9ix25zm7djp306iz6vyx73giamslsndzzpsgcbmg0wadb"; depends=[RCurl rJava]; }; - BrowserViz = derive2 { name="BrowserViz"; version="2.4.0"; sha256="09rdysgw9dxk5qpg7sxw0w3rpcrqjdibvwj3chcpgk6kv5ysfwgj"; depends=[BiocGenerics httpuv jsonlite]; }; - BubbleTree = derive2 { name="BubbleTree"; version="2.12.0"; sha256="0g40mh7b6awdvhqy70mamb33p2qn93z64p770phr8ccyi91dd93j"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; - BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.46.0"; sha256="0llfqpjbb4q8m6gjx0jq6nxpylqi7r715srkk41rx1bjs0ykbksg"; depends=[]; }; - BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.46.0"; sha256="089wh0rvcvagfx1v3y3r2k8ncm14j9cls2yaywlza8damlz4fbb5"; depends=[BufferedMatrix]; }; - CAFE = derive2 { name="CAFE"; version="1.18.0"; sha256="0x3hn8c7p3p5m215kjbcgxak4c7807ikxs7k4b1immqzz8m5rfqd"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; - CAGEfightR = derive2 { name="CAGEfightR"; version="1.2.0"; sha256="1xnsbwjnirhh4dsfpxc8f16wxnvabr07yzbbizxqyna0h3hr61s0"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges grr Gviz InteractionSet IRanges Matrix Matrix_utils pryr rtracklayer S4Vectors SummarizedExperiment]; }; - CAGEr = derive2 { name="CAGEr"; version="1.24.0"; sha256="1vin6inq3rlj365bhxpx28rp28isi7967r1plpdyi2lwx2f2d4im"; depends=[beanplot BiocGenerics BiocParallel BSgenome data_table DelayedArray formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; - CALIB = derive2 { name="CALIB"; version="1.48.0"; sha256="118sy35hi5p1nkm7ygh4pn7m3855vhywsj66j0v74iis00blpv1z"; depends=[limma]; }; - CAMERA = derive2 { name="CAMERA"; version="1.38.1"; sha256="0mz6ahdyv3334v8fbqan8i6plkyz20smfq4p7hjphcybjfxxsizv"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; - CAMTHC = derive2 { name="CAMTHC"; version="1.0.0"; sha256="1n2hn4snmlfrwr5c9di214sqvgmmihyxnbzbf0n2hx99rrjlzvpg"; depends=[apcluster Biobase BiocParallel corpcor DMwR geometry NMF pcaPP rJava SummarizedExperiment]; }; - CATALYST = derive2 { name="CATALYST"; version="1.6.7"; sha256="08dfjyay6b2ja9jykpzfycnyd9y20pysmshbw5vd5fb69mcjii8q"; depends=[Biobase circlize ComplexHeatmap ConsensusClusterPlus data_table dplyr drc DT flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra htmltools limma magrittr matrixStats nnls plotly purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater shiny shinyBS shinydashboard shinyjs SingleCellExperiment SummarizedExperiment]; }; - CAnD = derive2 { name="CAnD"; version="1.14.0"; sha256="0h1ry4z9g4daga7jqnm2wh631d4yzp738yf1vpxvf2d3f2qci8dv"; depends=[ggplot2 reshape]; }; - CCPROMISE = derive2 { name="CCPROMISE"; version="1.8.0"; sha256="1kpz5cwx0bk55w8paldvmvmgprxsrgyqf8r3vxns136ksv1a1zhx"; depends=[Biobase CCP GSEABase PROMISE]; }; - CEMiTool = derive2 { name="CEMiTool"; version="1.6.11"; sha256="1wypc50kq5y6bnwrfkqz50wckb65bxw294472hnzk4vmaiyymvck"; depends=[clusterProfiler data_table dplyr DT ff ffbase fgsea GeneOverlap ggdendro ggplot2 ggpmisc ggrepel ggthemes gRbase gridExtra gtable htmltools igraph intergraph knitr limma matrixStats network plyr pracma RColorBrewer rmarkdown scales sna stringr tidyr WGCNA]; }; - CFAssay = derive2 { name="CFAssay"; version="1.16.1"; sha256="1l8l157df163cy4i6qc1q95x1pqc80y7dp5jf9nfssgbkls2dpfv"; depends=[]; }; - CGEN = derive2 { name="CGEN"; version="3.18.0"; sha256="0p0c05axpj94v3gksy065244vlxh9q4g6ifv07jxrvl23ji4bnyi"; depends=[mvtnorm survival]; }; - CGHbase = derive2 { name="CGHbase"; version="1.42.0"; sha256="0ghxp49xdi09p3f2qwrdrq2p4qjafj4z1rr08ycgbf11gb22h1sc"; depends=[Biobase marray]; }; - CGHcall = derive2 { name="CGHcall"; version="2.44.0"; sha256="1k65kaiqvjyllzbpa2367n6f6kkmsy463kpflzs66hqhx2fshsmi"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; - CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.36.0"; sha256="1j92x5dyxp6hjj87g1hgw5q8fd4k2q5rb97ir47xkalkcskg0ddh"; depends=[Biobase CGHbase CGHcall]; }; - CGHregions = derive2 { name="CGHregions"; version="1.40.0"; sha256="04j87bd2ygda6np72vs1bx857y5mbaga19ky6pgyxv9lahi62xyw"; depends=[Biobase CGHbase]; }; - CHARGE = derive2 { name="CHARGE"; version="1.2.0"; sha256="0230pvgsf775lq4n9cpxb95bqq438f4z0wx9mmbj4yir8bljy0mk"; depends=[cluster diptest factoextra FactoMineR GenomicRanges IRanges matrixStats plyr SummarizedExperiment]; }; - CHRONOS = derive2 { name="CHRONOS"; version="1.10.1"; sha256="03j4qcak7bpgw80gzxb2mj6k134jqp5frzd5ls6b5290lkknj720"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl XML]; }; - CINdex = derive2 { name="CINdex"; version="1.10.0"; sha256="0c4p3v9a0njf28gdhvdbnydlhjgpnwzakhnvkvngs3mhbwpy9ih5"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; - CMA = derive2 { name="CMA"; version="1.40.0"; sha256="1v77yiqmvd90pxbs64xfpglwy006w88b4zrb5rk90r0vasnvdl5n"; depends=[Biobase]; }; - CNAnorm = derive2 { name="CNAnorm"; version="1.28.0"; sha256="050yhjqqqm5kqjpw2ar8gf0yjqzmr0xzwa0c10dfry6hml63d6m3"; depends=[DNAcopy]; }; - CNEr = derive2 { name="CNEr"; version="1.18.1"; sha256="1h8p7fibhyn7117qwjrl9f7y5cczv50qihzfd83pj76z5k5ylzry"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; - CNORdt = derive2 { name="CNORdt"; version="1.24.1"; sha256="1frvylz88524nac6wk4r9j0wfvywzf8dq998pfnl9km7q4f888i0"; depends=[abind CellNOptR]; }; - CNORfeeder = derive2 { name="CNORfeeder"; version="1.22.1"; sha256="1h6l5lq0xqzh4y7mrq2kvnj3gpv3ni9c8qdn1wnrsa8q0i8xcs9v"; depends=[CellNOptR graph]; }; - CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.24.0"; sha256="140a42s9h7li597y45z3dmb8y1nf53xxl7vnipi8k0rgcix465dl"; depends=[CellNOptR nloptr]; }; - CNORode = derive2 { name="CNORode"; version="1.24.1"; sha256="04zf8cidpw1f7zdyd7ns4x84jpdvbvkg5zifw0w1hri70n8yl8r4"; depends=[CellNOptR genalg]; }; - CNPBayes = derive2 { name="CNPBayes"; version="1.12.0"; sha256="1vlbnlr63vv2s5nyndiqcb3kh737apswqqygwqn5pz6973nvlcl3"; depends=[BiocGenerics coda combinat dplyr GenomeInfoDb GenomicRanges ggplot2 gtools IRanges magrittr matrixStats mclust purrr RColorBrewer Rcpp reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; - CNTools = derive2 { name="CNTools"; version="1.38.0"; sha256="038nbqgjahc9b646s9avxgccxz1qsly8vqj84dzqwgpyvx7hxqpi"; depends=[genefilter]; }; - CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.14.0"; sha256="0fh94iv66li3zsnadxyxwzhs1jcz63vpmc6khp0srac2kzvc1kcs"; depends=[exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; - CNVrd2 = derive2 { name="CNVrd2"; version="1.20.0"; sha256="10141xwwkzrkgkad8x5y1ha779b47vp7b2qk32hgw19ys4lraj79"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; - CNVtools = derive2 { name="CNVtools"; version="1.76.0"; sha256="0xmqqq3j3xxm1pnldw6l3vnww9lfjlghvkrfzfbwxmq8gkxmyzji"; depends=[survival]; }; - COCOA = derive2 { name="COCOA"; version="1.0.2"; sha256="1y7y3zjzpljfqdhal87xir9z50xg8p96n0yx98qz1lqairbdkcpj"; depends=[Biobase BiocGenerics ComplexHeatmap data_table GenomicRanges ggplot2 IRanges MIRA S4Vectors tidyr]; }; - CODEX = derive2 { name="CODEX"; version="1.14.1"; sha256="0k8x1k1m11r69dbzrxqx9b1pqi5x3pf1cxyf5j4hz7qsk8fncsnq"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; - COHCAP = derive2 { name="COHCAP"; version="1.28.1"; sha256="1zn0skpi7h2nws877bj1van3358cmh88prvj9691kwcwj47h1zny"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; - COMPASS = derive2 { name="COMPASS"; version="1.20.1"; sha256="0jhi9dhyfdnc9fmybj2q9vcshkikn9rhcdzfr9hi2jizh7pa4w8z"; depends=[abind BiocStyle clue data_table dplyr knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; - CONFESS = derive2 { name="CONFESS"; version="1.10.1"; sha256="0w32gz85balsy88q17g303nbn1c8b2gp7cxqqx9vwsvzvd7d78p1"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; - CORREP = derive2 { name="CORREP"; version="1.48.0"; sha256="1jg2j61f3cz7c7xf9wm96gvl5ykc8vbb14vhrbcmibjzxf7zfd1r"; depends=[e1071]; }; - COSNet = derive2 { name="COSNet"; version="1.16.0"; sha256="1bw979xx2g17p3pisvbvskv8xq26pqrn9lcq8jh6av8m592b90gp"; depends=[]; }; - CRISPRseek = derive2 { name="CRISPRseek"; version="1.22.1"; sha256="0lpvq8bjjcqz6zn4dnlxjs7vynqmq0cy7jcg9nypmrgjcn0pgc6l"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges S4Vectors seqinr]; }; - CRImage = derive2 { name="CRImage"; version="1.30.0"; sha256="11pzsg1bjsg12ad4vrp8slzr53nynb93i6j9zqgcvzh0dl004ss9"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; - CSAR = derive2 { name="CSAR"; version="1.34.0"; sha256="0r8rqgz95bk7piwhgh4ljr8zvnvgxz7w7h7cjwqywsg259sf54sj"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - CSSP = derive2 { name="CSSP"; version="1.20.0"; sha256="06yzh3kgxwg512ycncxj0ann0m918wyij6xwyz0kskln2vsq84jm"; depends=[]; }; - CTDquerier = derive2 { name="CTDquerier"; version="1.2.0"; sha256="0lpf49gdp5bj83sqv3hnaa4l3lib112m0h4k8zbjvjgkw6inn9wb"; depends=[BiocFileCache ggplot2 gridExtra igraph rappdirs RCurl S4Vectors stringdist stringr]; }; - CVE = derive2 { name="CVE"; version="1.8.0"; sha256="0fjisya8iipc4ghslaw3di62mmi93v34w1c39a57mqk5gng2pzr7"; depends=[ape ConsensusClusterPlus ggplot2 gplots jsonlite plyr RColorBrewer shiny tidyverse WGCNA]; }; - CancerInSilico = derive2 { name="CancerInSilico"; version="2.2.1"; sha256="1irbgmwfpsjyl8an06qs7x0nh4jrljhklkm3ak2sd13fgg88j73s"; depends=[BH Rcpp]; }; - CancerMutationAnalysis = derive2 { name="CancerMutationAnalysis"; version="1.24.0"; sha256="10768i5ijrwr7hcshk60r5w6ckqacqk3f9jhs3qkm2ic0g47vgwb"; depends=[AnnotationDbi limma qvalue]; }; - CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.8.0"; sha256="1cg1im5p53n5afz0pzfg7l7wp6lm8cl0dr5x8di62va71n9qdk77"; depends=[cluster ConsensusClusterPlus iCluster impute limma NMF sigclust SNFtool survival]; }; - Cardinal = derive2 { name="Cardinal"; version="2.0.4"; sha256="1119r8993msnldilkp7qv3mslbbv3bfypidnm52cl9ybznlj757r"; depends=[Biobase BiocGenerics BiocParallel dplyr EBImage irlba lattice magrittr matter ProtGenerics S4Vectors signal sp]; }; - Category = derive2 { name="Category"; version="2.48.1"; sha256="18rsxlwa1l06i635cnznb9b2zssqcgb71pihky29gl2gwp7a654b"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; - CausalR = derive2 { name="CausalR"; version="1.14.1"; sha256="0v4k8nbxjf9q092d029pvpy1f29zby8j60b89x559cr2m78zw870"; depends=[igraph]; }; - CellMapper = derive2 { name="CellMapper"; version="1.8.0"; sha256="0qaw5pf3lgdkfcki0z2hp9g0b07j2khinwh9r0ajvji4j7hiwrw5"; depends=[S4Vectors]; }; - CellNOptR = derive2 { name="CellNOptR"; version="1.28.1"; sha256="0ygpryc9sbj031lznlmhr23vgdqgyyyzjx6zbyv2nx703x9vrj3l"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; }; - CellScore = derive2 { name="CellScore"; version="1.2.0"; sha256="0rc77c7z9nsid22yrdny6kd4yg6031njznsdvk6n82mv2sadk51b"; depends=[Biobase gplots lsa RColorBrewer squash]; }; - CellTrails = derive2 { name="CellTrails"; version="1.0.1"; sha256="1x64c4fdwlbf57s4s6zjvpjy8jga7sz790gs6ll1d79smsw3ahql"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; - CexoR = derive2 { name="CexoR"; version="1.20.0"; sha256="1pwjq3r7l9hinab38g2v5sjrnbhxva1jfjvh20wh75l2hzfjs62j"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; - ChAMP = derive2 { name="ChAMP"; version="2.12.4"; sha256="197b3k61panvxw0vxf8qjj8l86q95mf9al055scpcf7sc6xwz0db"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel FEM GenomicRanges globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; - ChIC = derive2 { name="ChIC"; version="1.2.0"; sha256="190jc1k318bk1xh93h726bxl0711qzn672lri3lwsrbjm76w8m1g"; depends=[BiocGenerics caret caTools ChIC_data GenomicRanges IRanges progress S4Vectors spp]; }; - ChIPComp = derive2 { name="ChIPComp"; version="1.12.0"; sha256="1sypdsvwzssraanlhddhzpf9p0xs3qlflc0hp7yfbp0aplsifx85"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; - ChIPQC = derive2 { name="ChIPQC"; version="1.18.2"; sha256="0khm2y36f92zpwqcqrd8jkrsbgfcir70dwi8zk7pq0hpbpnpl0bm"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; - ChIPSeqSpike = derive2 { name="ChIPSeqSpike"; version="1.2.1"; sha256="0cy2099pc3vcjw47xigiq7qs8czfgaizlqyb5hy4j1lpr5c8qpia"; depends=[BiocGenerics corrplot GenomicRanges ggplot2 IRanges LSD Rsamtools rtracklayer S4Vectors seqplots stringr]; }; - ChIPXpress = derive2 { name="ChIPXpress"; version="1.26.0"; sha256="1b5ss7s8chjm8zgpxkwmghgf2dh1xn225y1qfad838gs0d2rmd5h"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; - ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.4.0"; sha256="115ycr6s5lb9888sz9xxdsip22vnbj1gfavrm61ks12rqf0ch2b6"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RcppRoll ROCR rtracklayer S4Vectors]; }; - ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.6.0"; sha256="1773bpiybn4g9jlv46z29x19q4dpcvn7lairr3lq5pdqbqmz5hnp"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; - ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.16.1"; sha256="1x98d8iwrxjwdz1s5cnvi6flynw9gdkmara9gwf205qxgmy7j3a3"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager biomaRt Biostrings BSgenome DBI DelayedArray ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GO_db graph idr IRanges limma matrixStats multtest RBGL regioneR Rsamtools S4Vectors seqinr SummarizedExperiment VennDiagram]; }; - ChIPseeker = derive2 { name="ChIPseeker"; version="1.18.0"; sha256="08d8m4svnyki4pg0mwy17p7wi7anw9ba347ck36x8lzbjb8xcmwg"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene UpSetR]; }; - ChIPseqR = derive2 { name="ChIPseqR"; version="1.36.0"; sha256="0m9xrb1aksmrh0zm6sa0nklwbn0mydz70dydhycfknv96l0rrxqn"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; - ChIPsim = derive2 { name="ChIPsim"; version="1.36.0"; sha256="096dlqis3mcbhz837ys0n9yimgrh5fw5cpx16kjg9hfs48253nxs"; depends=[Biostrings IRanges ShortRead XVector]; }; - ChemmineOB = derive2 { name="ChemmineOB"; version="1.20.0"; sha256="037j2hwmrbk0k2abygkrkmdshsh1c434dj0iqdmqsnbyyvv34q2m"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; - ChemmineR = derive2 { name="ChemmineR"; version="3.34.1"; sha256="0pzvwaycvz61156ypqf24a42nhhmlhx2hccyra3g0jm97adm69iw"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra png Rcpp RCurl rjson rsvg]; }; - Chicago = derive2 { name="Chicago"; version="1.10.1"; sha256="0m3fv8qgxaysnc02ndmk0bx0rk8ly02nivhn0hzgdh6vbrgqgzdr"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; - ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.36.0"; sha256="0ah133mzrwxdhfazpw41h2h0bz555al9yjlyhahm249d4wbdzr8d"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; - ClassifyR = derive2 { name="ClassifyR"; version="2.2.6"; sha256="1crw7qn6c4h1gx324wgyzjh1z49zb5c43jrl4kiqva8cmds11h46"; depends=[BiocParallel locfit MultiAssayExperiment plyr S4Vectors]; }; - Clomial = derive2 { name="Clomial"; version="1.18.1"; sha256="0m1s90syqm6ll61ii1zms1phrycfngl7r2s7d9lxck19imdg8svz"; depends=[matrixStats permute]; }; - Clonality = derive2 { name="Clonality"; version="1.30.0"; sha256="0nhlrzy6z8kcfghw3ciy4ymbnmwb7y68bb1ikz7fxi4d5pywzm03"; depends=[DNAcopy]; }; - ClusterJudge = derive2 { name="ClusterJudge"; version="1.4.0"; sha256="1yi3hcbk8ka9krrc2q8jv0sq5szpwp3iw3wnn8x9ibn1qyimzwc5"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; - ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.10.0"; sha256="1jwl2v9qja11rrdllqkc2hlqiirzcav7s6343d66qaajq02iagzj"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; - CoCiteStats = derive2 { name="CoCiteStats"; version="1.54.0"; sha256="0ar66vhlw6zhrrf6bpd82hqwxh4g6apic56mx9xir40302ikc1h4"; depends=[AnnotationDbi org_Hs_eg_db]; }; - CoGAPS = derive2 { name="CoGAPS"; version="3.2.40"; sha256="05d8av4q3nvdyf976i9ninb5h3lxk3nr7b327jj7v9qvg9hlmzqh"; depends=[BiocParallel cluster data_table gplots RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - CoRegNet = derive2 { name="CoRegNet"; version="1.20.0"; sha256="1z8ihzn4i9zzn7cw2376j92cx1b0w543vr9f47xkhnsj871f2v6c"; depends=[arules igraph shiny]; }; - CompGO = derive2 { name="CompGO"; version="1.18.0"; sha256="1hzps1isfpdmcxdlpfqhanl0qafydgsgjc5xqxgd8zvib4zb28za"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="1.20.0"; sha256="0s01dzcfj1lmpqfpsbqw7r4858krfzy499lz4cwx4fq3mbyvy2aj"; depends=[circlize colorspace GetoptLong GlobalOptions RColorBrewer]; }; - ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.46.0"; sha256="00q1xbi7znfvvcqb1szqlw7zh4vvpf1si80k5zylys512ixg9sns"; depends=[ALL Biobase cluster]; }; - CopywriteR = derive2 { name="CopywriteR"; version="2.14.1"; sha256="1hbiw0m9hmx4na9v502pxf8y5wvxzr68r4d3fqr2755gxx86qck6"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; - CorMut = derive2 { name="CorMut"; version="1.24.0"; sha256="1p4xj8f5hf1z31943s51inc0mc28bphzy5qs4ay2nccwshbypq0l"; depends=[igraph seqinr]; }; - Cormotif = derive2 { name="Cormotif"; version="1.28.0"; sha256="0lb691mvr9zim7z5yplncmlzyr799jym1wvrgfm1diqjz2daixai"; depends=[affy limma]; }; - CountClust = derive2 { name="CountClust"; version="1.10.1"; sha256="1b129r97wv3gm25pk3ccg5bmp2476jyhz1pphapqlrb1im3fixq6"; depends=[cowplot flexmix ggplot2 gtools limma picante plyr reshape2 slam SQUAREM]; }; - CoverageView = derive2 { name="CoverageView"; version="1.20.1"; sha256="164lla4v6ll0kqzapm3kmwz39k5shl0cwwashpbwiixrrxhcy8d2"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - CrispRVariants = derive2 { name="CrispRVariants"; version="1.10.1"; sha256="0n1mw3ybbdaybbcms12cj4vy21wahq5srny0qnbxjlzyl1zjbpr0"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; - CytoDx = derive2 { name="CytoDx"; version="1.2.1"; sha256="05apvaf4dmkdfsp2aary14i7znjyzk0k6rqcbsk6m98fkp3d9r8b"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; - CytoML = derive2 { name="CytoML"; version="1.8.1"; sha256="18isg4kjdn975q8vpziisnyxj1jxm4lkq7hi9jy4imf7bffc234i"; depends=[base64enc Biobase data_table flowCore flowUtils flowWorkspace ggcyto graph jsonlite ncdfFlow openCyto plyr RBGL Rgraphviz XML]; }; - DAPAR = derive2 { name="DAPAR"; version="1.14.5"; sha256="0s09y5kpivaichzmfchksaayxchdmqgldcba0waxfxzsapwfb9p1"; depends=[AnnotationDbi Cairo clusterProfiler cp4p DAPARdata doParallel dplyr factoextra FactoMineR foreach ggplot2 gplots graph highcharter imp4p impute knitr lattice limma lme4 Matrix MSnbase norm openxlsx pcaMethods png preprocessCore RColorBrewer readxl reshape2 scales siggenes stringr tidyr tidyverse tmvtnorm vioplot vsn]; }; - DART = derive2 { name="DART"; version="1.30.0"; sha256="0dxwy95p43c0shx30y95sj1pl64kqkh2bsnj680q196zgyg937s6"; depends=[igraph]; }; - DBChIP = derive2 { name="DBChIP"; version="1.26.0"; sha256="1wk8nvfcfhsymhbi6id0kd1jzcykh6hhikl2040g0v6gi252gv2v"; depends=[DESeq edgeR]; }; - DChIPRep = derive2 { name="DChIPRep"; version="1.12.0"; sha256="1avcjr7r54grh3yn5pjbzji3syc8vvah9as7asv3cwmyqzaya4r0"; depends=[assertthat ChIPpeakAnno DESeq2 fdrtool GenomicRanges ggplot2 plyr purrr reshape2 S4Vectors smoothmest soGGi SummarizedExperiment tidyr]; }; - DECIPHER = derive2 { name="DECIPHER"; version="2.10.2"; sha256="191s87akdjfqdbq4xvz42s10fpq3w7jm6962ndhcibm8kzgz241r"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; - DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.2.0"; sha256="1a4m4xs8dd0459vh5bhi96w6vchmqgap3snrj8x6jjlpvkkhwl8l"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; - DEDS = derive2 { name="DEDS"; version="1.56.0"; sha256="1zfgaar3bpss49zhs81mwlfzkx5lv92j8a64xd12ig88is24cw2c"; depends=[]; }; - DEFormats = derive2 { name="DEFormats"; version="1.10.1"; sha256="01zhxi2gpbdbfxxh8myq7930rk2zcwdchdj7xa2p4hrl2mzhr7c8"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; - DEGraph = derive2 { name="DEGraph"; version="1.34.0"; sha256="1vrv3lkda2dhcb9ig38xv0bvnk68z9bpsxr4846fq31dvxp6b5al"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; - DEGreport = derive2 { name="DEGreport"; version="1.18.1"; sha256="0fzxlx1bqcggya5bf7s0w2g368hzcjamq33z8mfj23c1d4dm0jmy"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr lasso2 logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; - DEGseq = derive2 { name="DEGseq"; version="1.36.1"; sha256="1p4ldk2wagsnjbxrq3s6fa3l6phqp77hjwv43gbdsh7ph8rzd33g"; depends=[qvalue]; }; - DEP = derive2 { name="DEP"; version="1.4.1"; sha256="0adwq2lgnqf29p1ylq4mvqx16g45bcs79nhsknkl9ph3i7g2slgj"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; - DEScan2 = derive2 { name="DEScan2"; version="1.2.1"; sha256="0l47x2yrxcyj0mfz972acyw2v9n08ib859jb3v9qasrbw04qnvwk"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; - DESeq = derive2 { name="DESeq"; version="1.34.1"; sha256="0bpiixczbhlyaiinpbl6xrpmv72k2bq76bxnw06gl35m4pgs94p2"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; }; - DESeq2 = derive2 { name="DESeq2"; version="1.22.2"; sha256="0n5ah84mxn87p45drzy0wh2yknmzj1q5i6gv0v9vgg1lj7awb91r"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; - DEXSeq = derive2 { name="DEXSeq"; version="1.28.3"; sha256="1wsj1kqfrakmjnlplxmrv17r2spzcdkmwdkhggyjbf8mdhqs3w16"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; - DEqMS = derive2 { name="DEqMS"; version="1.0.1"; sha256="1869msy07xh9y0yr0mskrkpmzmf4x3vdarvn8wi78hk1scq1zk71"; depends=[ggplot2 limma]; }; - DEsingle = derive2 { name="DEsingle"; version="1.2.1"; sha256="0w3b7pz04l60hrbw4k7rkp4xmf8hzxca7pgrjyalf946z6yvky0s"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; - DEsubs = derive2 { name="DEsubs"; version="1.8.1"; sha256="0whs5q02lgis04zyf6abd9b5phv3bw508k4ngp197ka02pbpvxxz"; depends=[circlize DESeq DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; - DFP = derive2 { name="DFP"; version="1.40.0"; sha256="12kb7cjsfdscdwanjbzvwgp1ra0kmijrp1qyx87sxsk4hxk236ml"; depends=[Biobase]; }; - DMCHMM = derive2 { name="DMCHMM"; version="1.4.0"; sha256="12jn77dxbcbzbfdsy4l1vycf68bnw2wdhrwnnjc3829arcz2mkph"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; - DMRScan = derive2 { name="DMRScan"; version="1.8.0"; sha256="0vwmkw3abs0v8z49qdkrqxia0kn5i3pl7yqzv42l5xz7d2498s7q"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; - DMRcaller = derive2 { name="DMRcaller"; version="1.14.2"; sha256="13x59irimrjff2pa9vw9yw341xm13wxfzhrfv4ylw60jpzbz71i1"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; - DMRcate = derive2 { name="DMRcate"; version="1.18.0"; sha256="0930rrz2aps91mcqihap9830km9x7if6vgpvjplmacvs1x2k3wyh"; depends=[DMRcatedata DSS GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors]; }; - DMRforPairs = derive2 { name="DMRforPairs"; version="1.18.0"; sha256="11gbnxlkgkx9ynmslxvinfnq39rpg392zbff6g36fd5nsr3dppxd"; depends=[GenomicRanges Gviz R2HTML]; }; - DNABarcodes = derive2 { name="DNABarcodes"; version="1.12.0"; sha256="0g6j7ish0fk9jcib94wssjgp1m8ldcp42hyyg1ypr945fa3xghx0"; depends=[BH Matrix Rcpp]; }; - DNAcopy = derive2 { name="DNAcopy"; version="1.56.0"; sha256="04cqdqxhva66xwh1s2vffi56b9fcrqd4slcrvqasj5lp2rkjli82"; depends=[]; }; - DNAshapeR = derive2 { name="DNAshapeR"; version="1.10.0"; sha256="1rplgi36jn33npihhmk0vdsiali814y5v1wz5fdna3k9b47id6b6"; depends=[Biostrings fields GenomicRanges Rcpp]; }; - DOQTL = derive2 { name="DOQTL"; version="1.18.0"; sha256="0ligqm4l2x5dz794djapri770j27rhibhdzc48y980768gjpkm8k"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt BSgenome_Mmusculus_UCSC_mm10 corpcor doParallel foreach fpc GenomicRanges hwriter IRanges iterators mclust QTLRel rhdf5 Rsamtools RUnit VariantAnnotation XML]; }; - DOSE = derive2 { name="DOSE"; version="3.8.2"; sha256="1gh7dhvfc71kawxcfx8xqlir7mwvg5mmz4lqrdrvw5knvi2h3mfa"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2 S4Vectors]; }; - DRIMSeq = derive2 { name="DRIMSeq"; version="1.10.1"; sha256="021xzx7ndvjdahi715qvq2xxnnhdsn9h8g6imps5ls3qmk5024d2"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; - DSS = derive2 { name="DSS"; version="2.30.1"; sha256="0m18793vqaqamx3rj3pwrirc7ygmmg4774il8d59qmwinlppyxqw"; depends=[Biobase bsseq DelayedArray]; }; - DTA = derive2 { name="DTA"; version="2.28.0"; sha256="1gsc6sbi1awi92w1wnqddybz2n2n8f8pvsg95sp90xp11sjrnvvx"; depends=[LSD scatterplot3d]; }; - DaMiRseq = derive2 { name="DaMiRseq"; version="1.6.2"; sha256="0kllq3wndg7p96lqls4xsqdnhrwryry96qxbz5myvdrzywmfppkv"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; - DeMAND = derive2 { name="DeMAND"; version="1.12.0"; sha256="06hip99jzi5z89v1mprmqxrziv1zf6lysmg6ixsxaq8f0l9x2m38"; depends=[KernSmooth]; }; - DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.24.0"; sha256="1j5mlnx0n3xn2agnp2wwdbyyf36lh277giapz0sknlnpfdhzc4jn"; depends=[ggplot2 limSolve pcaMethods]; }; - DeepBlueR = derive2 { name="DeepBlueR"; version="1.8.1"; sha256="0vsyndijwax7za0kfp51db73b74blj5hd67jar2icp9fsl02x10a"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; - DelayedArray = derive2 { name="DelayedArray"; version="0.8.0"; sha256="0cl5anqkjwvqx19snjhz0zj8cp8ibckiifl28h821h50g62nvb2f"; depends=[BiocGenerics BiocParallel IRanges matrixStats S4Vectors]; }; - DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.4.0"; sha256="03fk2avl1vyjv2wslczkc82qr0zmp1ra8iimd47pbmnnm839ly4w"; depends=[BiocParallel DelayedArray HDF5Array IRanges Matrix matrixStats S4Vectors]; }; - DiffBind = derive2 { name="DiffBind"; version="2.10.0"; sha256="0j8pal40lr1gv8sss96hhkj7l1qn9sy4q4l2kqd4rfwl7qrcnfw5"; depends=[amap BiocParallel DESeq2 dplyr edgeR GenomicAlignments GenomicRanges ggplot2 ggrepel gplots IRanges lattice limma locfit RColorBrewer Rcpp Rsamtools S4Vectors SummarizedExperiment systemPipeR zlibbioc]; }; - DiffLogo = derive2 { name="DiffLogo"; version="2.6.0"; sha256="1an8c2h0vsy8x3q90bgy7gfigz11k460gpi4wlyj6gq8h6bd1fmy"; depends=[cba]; }; - Director = derive2 { name="Director"; version="1.8.0"; sha256="0xzds7gi9bp6hp8dpw9c4ls6b1rcfk4w4my1wacf0z9hnwpd60r3"; depends=[htmltools]; }; - DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.24.1"; sha256="0vazfjzqy78p5g7dnv30lbqbj4bhq4zafd2wh6gdwy2il1fd78xa"; depends=[BiocGenerics IRanges S4Vectors]; }; - DominoEffect = derive2 { name="DominoEffect"; version="1.2.1"; sha256="0lb3s9lzscnqvs3vq6ah1fib5day98y0fnh1gdjrf49fl8fkgx3r"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; - Doscheda = derive2 { name="Doscheda"; version="1.4.1"; sha256="01k95cbkwswpnzc53rszsnk55bx6xisdj5i8211h8zgwjsikryik"; depends=[affy calibrate corrgram d3heatmap drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; - DriverNet = derive2 { name="DriverNet"; version="1.22.0"; sha256="13yd9inyqkaw363m6apiyclkjpb3f5khbi0vwc90whi8q9wvsl8f"; depends=[]; }; - DropletUtils = derive2 { name="DropletUtils"; version="1.2.2"; sha256="0kxfhd7r2r1p0bmzps0d965l84fk63lc1shqywll5rx0scnhlcsw"; depends=[beachmat BiocParallel edgeR HDF5Array Matrix Rcpp rhdf5 Rhdf5lib S4Vectors SingleCellExperiment]; }; - DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.24.2"; sha256="17x0smsb1kdj87ndw0dakqjb4c2dq2kkv5z8cs3i4x87hz56yrbd"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; - DupChecker = derive2 { name="DupChecker"; version="1.20.0"; sha256="114g9qx4v2lz521pndha3gk0cl2pq1jxqw1z9pzijgdj9lyj0jzv"; depends=[R_utils RCurl]; }; - DynDoc = derive2 { name="DynDoc"; version="1.60.0"; sha256="0k18f07mg7hg085l0pi5j6l8c04m5zd6jx3ha6cpjv6nd0m2lljw"; depends=[]; }; - EBImage = derive2 { name="EBImage"; version="4.24.0"; sha256="18v2zr7xh0d0xbs7mxa2b6xjqlqiml0hji27gq1351xp5bf2pxvx"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; - EBSEA = derive2 { name="EBSEA"; version="1.10.0"; sha256="1cbc21a6habvlslavdpn5v1nxkdhcpqp27fwg5y7hy9c8fqixqq0"; depends=[edgeR limma plyr]; }; - EBSeq = derive2 { name="EBSeq"; version="1.22.1"; sha256="1gzbk1hbwdan0j131ah88yryfvsiq0wqjnb09qbr4qaczpgvbad0"; depends=[blockmodeling gplots testthat]; }; - EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.16.1"; sha256="12ml7qlsf7mnib88lm3q6lb3b34yfj4fgvp9c4vmfj62m88m17xw"; depends=[EBSeq]; }; - EBarrays = derive2 { name="EBarrays"; version="2.46.0"; sha256="1qz1z9v3dc0rdwm33v47avvgvqfxhbzw34idcxa1ap7ynx9c2sqs"; depends=[Biobase cluster lattice]; }; - EBcoexpress = derive2 { name="EBcoexpress"; version="1.26.0"; sha256="12hh2qvv0jfpsd8jz41jvzs605mccj35c5rz54697lgi7pdhwm4l"; depends=[EBarrays mclust minqa]; }; - EDASeq = derive2 { name="EDASeq"; version="2.16.3"; sha256="0559ph606ps2g9bwbl0a2knkcs5w581n9igngpjxvk5p56k24gb5"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; - EDDA = derive2 { name="EDDA"; version="1.20.1"; sha256="1psyzqsksmv9w3wwj8h4x1ywkkhk05z71afdxh57lhlh0y4vf6fw"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; }; - EGAD = derive2 { name="EGAD"; version="1.10.0"; sha256="1krwqspyw63zddgksvjvcidfzcxv9165p5dl3cgh1qsb3s427gla"; depends=[affy arrayQualityMetrics Biobase GEOquery gplots igraph impute limma MASS Matrix plyr RColorBrewer RCurl zoo]; }; - EGSEA = derive2 { name="EGSEA"; version="1.10.1"; sha256="0mimy2k7z3zyxksyax8xbl4yk48986b88x7vnfd2hlhibdcc1wg2"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 Glimma globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; - ELBOW = derive2 { name="ELBOW"; version="1.18.1"; sha256="03jk906v6my6xf85ki2af8kd540bjjgn76xq4w38xc4dpfmpypla"; depends=[]; }; - ELMER = derive2 { name="ELMER"; version="2.6.3"; sha256="0x9v0z2b649nwnxaj9fkyrlgqdlxl4cmdm5wmpw8nzn6r432wfmi"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape rmarkdown rtracklayer rvest S4Vectors stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; - EMDomics = derive2 { name="EMDomics"; version="2.12.0"; sha256="1savm8vh1cl8s9rw5jy341a6azx1d8pm0935jvl10ai0cs6q1f22"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; - ENCODExplorer = derive2 { name="ENCODExplorer"; version="2.8.0"; sha256="1836v5yj5rr3mvmsakbz5ccqc0h3dngipigszbrzcb2qb9m55gqf"; depends=[data_table dplyr DT jsonlite RCurl shiny shinythemes stringi stringr tidyr]; }; - ENVISIONQuery = derive2 { name="ENVISIONQuery"; version="1.30.0"; sha256="0ciilgg8mw4lzclfqqgfrc6crig15m418qfpcfk9s4ykcnjzzial"; depends=[rJava XML]; }; - ENmix = derive2 { name="ENmix"; version="1.18.2"; sha256="0fw4bwdi9yax34r50xclzxgjvq2g02ynz9pxyack20xycn3vn3zn"; depends=[doParallel foreach geneplotter impute MASS minfi preprocessCore SummarizedExperiment sva wateRmelon]; }; - ERSSA = derive2 { name="ERSSA"; version="1.0.1"; sha256="02g7kp2g3jxk9fy9fv2b1pkzc46067jwzq4p340w9c8ss8hrpqwh"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; - EasyqpcR = derive2 { name="EasyqpcR"; version="1.24.0"; sha256="1znawlhb44j21jhspn703d62pi1zknv1khklmsdlspn5db67wpin"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; }; - EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.10.0"; sha256="05n0984x77kvxjj80vx4sh7sz2v90wzf4vqsgbkn7wm45ly6x3h0"; depends=[]; }; - EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.0.1"; sha256="1z7rv5na9j9s95zx0l61ncxxv5a452p0xqfk7p1bdvl3x8ags4mq"; depends=[ggplot2 ggrepel]; }; - EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.12.0"; sha256="1bg3nrlsbfqvkrmwnwyilaniqzkaf2mirdjq58bwvz2022lwyzyg"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; - EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.12.1"; sha256="1jpmwlhdq99rgfk24pj0q72rnsi216i0yzwfc1v959v3p9132qq7"; depends=[AnnotationDbi BiocFileCache biocGraph BiocManager ComplexHeatmap DESeq2 EDASeq edgeR geneplotter GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma MASS pathview rappdirs ReportingTools Rgraphviz S4Vectors safe SPIA SummarizedExperiment topGO]; }; - EpiDISH = derive2 { name="EpiDISH"; version="1.4.1"; sha256="1qd4sglib4852igc1hxrrxsr108mil4mj4xxmf61fz45cxq0v262"; depends=[e1071 MASS quadprog]; }; - EventPointer = derive2 { name="EventPointer"; version="2.0.1"; sha256="0rx31xj13m340m1jfms4bzb5c6shmnh4rrzlv3qcjf6zfgh3n118"; depends=[affxparser cobs doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges graph igraph IRanges limma MASS Matrix matrixStats nnls prodlim qvalue RBGL rhdf5 S4Vectors SGSeq stringr SummarizedExperiment]; }; - ExCluster = derive2 { name="ExCluster"; version="1.0.1"; sha256="0msz6fd81gyvix0jmh5mnpp4kfhkj6whl0q5l905abnncn2mfgpr"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; - ExiMiR = derive2 { name="ExiMiR"; version="2.24.0"; sha256="1nyyvznjvp9rrgzdp63klq3gah8w1qvgi4hkjf9icwc5liszr48j"; depends=[affy affyio Biobase limma preprocessCore]; }; - ExperimentHub = derive2 { name="ExperimentHub"; version="1.8.0"; sha256="1cxdkzkb4rkzsxcva9ich7p9ysdhijqrmacq1hvciyjrj0ql69w4"; depends=[AnnotationHub BiocGenerics BiocManager curl S4Vectors]; }; - ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.8.0"; sha256="09b64x0rh6j83cwvv0hbwydlcxyp032c8m3h20k8kylkpiyx3csq"; depends=[AnnotationHubData BiocCheck BiocGenerics BiocManager biocViews curl DBI ExperimentHub graph httr S4Vectors]; }; - ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.10.0"; sha256="0ll7nhzqn25jwfkxg7cq156hhaiwdcm3fbbwy4891fb8pl4fj81a"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; - ExpressionView = derive2 { name="ExpressionView"; version="1.34.0"; sha256="0rar2h2qfhqbxs4haxfm6gfvhdmlr1wdp8ashkxkpx97svd4pa3x"; depends=[AnnotationDbi bitops caTools eisa GO_db isa2 KEGG_db]; }; - FCBF = derive2 { name="FCBF"; version="1.0.1"; sha256="0j5znaw4v0mcz5jyqfm9v599sn472x73x6b9a2jxgynzhnvkbyiq"; depends=[ggplot2 gridExtra SummarizedExperiment]; }; - FELLA = derive2 { name="FELLA"; version="1.2.0"; sha256="09ljq7wfmm30h93k3ig4iqa7hq13lv961s446wiq0b5yi9s0y72g"; depends=[igraph KEGGREST Matrix plyr]; }; - FEM = derive2 { name="FEM"; version="3.10.0"; sha256="1cqba4j2ajyrjyqwp3q2f89afx74603m5pbsjgflc8zfpf498rgl"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix org_Hs_eg_db]; }; - FGNet = derive2 { name="FGNet"; version="3.16.0"; sha256="12wv1r60nga4llvrx6blv9s6vlpcy22rz72qbf0ixpf16g16yc1x"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; - FISHalyseR = derive2 { name="FISHalyseR"; version="1.16.0"; sha256="0gkghipxbdpb3x55j9n583mi1z9cai8g8xcmyj5337dccx91lfag"; depends=[abind EBImage]; }; - FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.18.0"; sha256="0pw7r0w4ppv7jkjrx88a3bj85d96si1f0hqh7a5gpfb2593fd14k"; depends=[fda MASS]; }; - FamAgg = derive2 { name="FamAgg"; version="1.10.4"; sha256="0fkpcamaav0nlsg0j5dl6l7zfn9z6nrrm8avk8waxnxsghanbc6h"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; - FastqCleaner = derive2 { name="FastqCleaner"; version="1.0.0"; sha256="0v18zhzh8xd5b7828nnvlxc8gzwjgc9hnhznjd3w62js2yg9xv4l"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; - FindMyFriends = derive2 { name="FindMyFriends"; version="1.12.0"; sha256="1yyzqw9hzyxh2sjw8wj3xi5cvkcr9ssnahhwaqrln5zsiq72kn70"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; - FitHiC = derive2 { name="FitHiC"; version="1.8.0"; sha256="15xd8mz7660q4zr9p74mq1pqps4iz7pxp8f9ifn21gwg94aq1avn"; depends=[data_table fdrtool Rcpp]; }; - FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.14.1"; sha256="1j059f4hl41kwi6dcjmk8q0hlas7szlzgrvpjvjjcc466c074jhl"; depends=[jsonlite RCurl XML]; }; - FlowSOM = derive2 { name="FlowSOM"; version="1.14.1"; sha256="1s0yjg3jz4v7h60agwzchxa7xzmxszxawcqip4yhspihjpldiw0q"; depends=[BiocGenerics ConsensusClusterPlus flowCore flowUtils igraph tsne XML]; }; - FoldGO = derive2 { name="FoldGO"; version="1.0.2"; sha256="0wgb2zmn3ag2wj752r7gs066dpfdvwk6h87clz414iwp6gi480hq"; depends=[ggplot2 tidyr topGO]; }; - FourCSeq = derive2 { name="FourCSeq"; version="1.16.0"; sha256="1mknsjif4rv1wg5whv8dvkam2fblm2mnvj4qzv12ypnay0hdj8jq"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; }; - FunChIP = derive2 { name="FunChIP"; version="1.8.0"; sha256="1b8a2hd5i4zwq28i7zwz8g3b9w2wgrhdrghr70z5n62cxdrbdwd9"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; - FunciSNP = derive2 { name="FunciSNP"; version="1.26.0"; sha256="1l3p3s9l56ivgwzkixxr51n86s2p91rqayhz605iqpfpxyywyxzg"; depends=[Biobase BiocGenerics ChIPpeakAnno FunciSNP_data GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer S4Vectors scales snpStats TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - GA4GHclient = derive2 { name="GA4GHclient"; version="1.6.0"; sha256="03jk92nrd8n34z0kb88qsv7pxwwrwy7vjhczxz4a9mqwsb2gv891"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; - GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.4.0"; sha256="18g9bhn9wkmfw4f55lly97hf00f6ngh560b87nxyx0c9ls0a6wyg"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; - GARS = derive2 { name="GARS"; version="1.2.0"; sha256="1i9dfh9g4sx40r8jdwiv81609jgpaby38hvrvgcf6bw06hip6da4"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; - GAprediction = derive2 { name="GAprediction"; version="1.8.1"; sha256="1aybcbaxbwfd9fd1ivkfmhwsm3w9237bf1kph40kdis4zhvf7g1d"; depends=[glmnet Matrix]; }; - GDCRNATools = derive2 { name="GDCRNATools"; version="1.2.1"; sha256="0gwf534xkdg9ajlmhaicpl51kyk74hy7inp83nq4l6gr238x0q85"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; - GDSArray = derive2 { name="GDSArray"; version="1.2.0"; sha256="1yjrdnkbgxdfs5i2s10idy3szc9p6fcq6mv246hbsibl6zxxlqlh"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; - GEM = derive2 { name="GEM"; version="1.8.0"; sha256="008y135dahsrbk2ik5b7hrsjkhg23cxmsfnbyggm000dap6j4a3w"; depends=[ggplot2]; }; - GENESIS = derive2 { name="GENESIS"; version="2.12.4"; sha256="0ij4cmh01khyqxvv5y5n3h53xhhlm5qj8ijcqqg5mp7byn9nzvvc"; depends=[Biobase BiocGenerics data_table dplyr foreach gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; - GENIE3 = derive2 { name="GENIE3"; version="1.4.3"; sha256="1wbgfmv2266djrl71cnhgs89ariw9fncf0kbmz3ps6rc4cm0cj77"; depends=[reshape2]; }; - GEOmetadb = derive2 { name="GEOmetadb"; version="1.44.0"; sha256="05iwq2qglkc3xdkvc1049m1mzyiw91dmfb41vkqbqkyw7jc4561h"; depends=[GEOquery RSQLite]; }; - GEOquery = derive2 { name="GEOquery"; version="2.50.5"; sha256="074dl00c8yi1ihpjkw7vl9vy2hggvipib0jn0hli0wrw7x1h9hg6"; depends=[Biobase dplyr httr limma magrittr readr tidyr xml2]; }; - GEOsubmission = derive2 { name="GEOsubmission"; version="1.34.0"; sha256="1wiaik74yr84jppvq3hqijha2z4m3jr77q2k9zsr6kw0d82ianvw"; depends=[affy Biobase]; }; - GEWIST = derive2 { name="GEWIST"; version="1.26.0"; sha256="0gdq54rjfwlriv61sn0d9v08cfiz1p80p4asb13r05paa25w7vkm"; depends=[car]; }; - GGBase = derive2 { name="GGBase"; version="3.44.0"; sha256="023yzz4sin86fmkl2d0855mkn7iffhvinnz1hchx88f17rn8ysgz"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; }; - GGtools = derive2 { name="GGtools"; version="5.18.0"; sha256="1iqzqmcz8v4gmbcmxmla60848pmwlsbhrj9g8skxfclg7w21qx1m"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin Homo_sapiens IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; }; - GIGSEA = derive2 { name="GIGSEA"; version="1.0.0"; sha256="08q4askg07y6pz4j04rd4l1rralx22z4nfw6r2y8b79lcm6svawl"; depends=[locfdr MASS Matrix]; }; - GISPA = derive2 { name="GISPA"; version="1.6.0"; sha256="0xdqfv6ihn4qm1mv1xixyav921scvi406jz00n92jb7lwqm4aadw"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; - GLAD = derive2 { name="GLAD"; version="2.46.0"; sha256="0mj250k9q78z9s5xy2jra3lazv8nva6ngln8pqxdxhlcnrsrw0nk"; depends=[aws]; }; - GMRP = derive2 { name="GMRP"; version="1.10.1"; sha256="187h6fqy5rcrfb5wnvyg078bzxlb5fhbb4xs34r27pyj8xzbza9r"; depends=[diagram GenomicRanges plotrix]; }; - GOFunction = derive2 { name="GOFunction"; version="1.30.0"; sha256="1rsx1nkxyxd4dv4bn4mm1wyq6l0qn7a1gm60j03y9h4idp3hrgr8"; depends=[AnnotationDbi Biobase DBI GO_db graph Rgraphviz SparseM]; }; - GOSemSim = derive2 { name="GOSemSim"; version="2.8.0"; sha256="0ckihpy8jmgn2np1avprz76v9z7i5hqm2gj514c6dmmq3csbc7ib"; depends=[AnnotationDbi GO_db Rcpp]; }; - GOSim = derive2 { name="GOSim"; version="1.20.0"; sha256="00pl7xhs7mskkkmv45fcr448gbvr92v7xc43y0wyj3zrjh1fdm11"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; - GOTHiC = derive2 { name="GOTHiC"; version="1.18.1"; sha256="12gagxspz8d0w9yng6bvkckvws428m36589drj4mz7pjv3gyy2j3"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; - GOexpress = derive2 { name="GOexpress"; version="1.16.1"; sha256="1fh91vh3q6wzgnc71arpl7ahsk868sc3k4h6y9asch4dlhm9qzvh"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; - GOfuncR = derive2 { name="GOfuncR"; version="1.2.0"; sha256="021kgcbm8n2yalhzab11cyppwznlkglynnh45wsgy9i2vi2n2znk"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; - GOpro = derive2 { name="GOpro"; version="1.8.0"; sha256="1z2lyhnzqvrqfjzavwriaxxzbvbjhjaciyr9azkq296mj3cdih3v"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; - GOstats = derive2 { name="GOstats"; version="2.48.0"; sha256="0wlqqgfynwqnqhckhsfjwg9zkj6hkmzwd5y76dhqz720vy21rcln"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; - GOsummaries = derive2 { name="GOsummaries"; version="2.18.0"; sha256="0cmb08w5xjqpdjqjkrwqdfiyf1sfj1xqqlyjq9hv0ynjab6skhvm"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; - GRENITS = derive2 { name="GRENITS"; version="1.34.0"; sha256="0a2wdsaga0k5x37qad53fdvpp4smmpkfp9f7vy8r9mvr69j3ji9n"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; - GRmetrics = derive2 { name="GRmetrics"; version="1.8.1"; sha256="1ak5n76ig3f1bl60in01dbz07vgs2gd65dq18qgrd07dyd20f6xs"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; - GRridge = derive2 { name="GRridge"; version="1.6.0"; sha256="0l6r36kzdmgcamjzzrjchz0q4k9dsxvmdvrrnq1br1xlhgscqc85"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; - GSALightning = derive2 { name="GSALightning"; version="1.10.0"; sha256="0d1zfxzhcgb6h6p8pcfra9ck031n4yb309m17zbql1ld911nv297"; depends=[data_table Matrix]; }; - GSAR = derive2 { name="GSAR"; version="1.16.0"; sha256="1jdjr432i0njpfmymzbv4irf786hrp1wk4vy4sk2x0hcbjigds5z"; depends=[igraph]; }; - GSCA = derive2 { name="GSCA"; version="2.12.0"; sha256="08j8n9hjaf872c1n7ilzhm96d0hb4qa6l30qq516jpynxf326g2w"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; - GSEABase = derive2 { name="GSEABase"; version="1.44.0"; sha256="110al7x0ig8plzrprvhwc7xshi1jzpj2n8llhhg2fh6v6k0k6awr"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; - GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.2.1"; sha256="142x3mx8cknca82hj93l397566rliqmq9z888v1b4ip0vd87qk4l"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub GEOquery KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO rappdirs S4Vectors SummarizedExperiment]; }; - GSEAlm = derive2 { name="GSEAlm"; version="1.42.0"; sha256="16xflz0ad07qy3cl9r4qvi98hlxs2j9wm7dsbw518qkacynpc29g"; depends=[Biobase]; }; - GSRI = derive2 { name="GSRI"; version="2.30.0"; sha256="16zxia3ksgx14rafkjbxbic2rnskh7hql7ifi45n8gg0mkhw535c"; depends=[Biobase fdrtool genefilter GSEABase les]; }; - GSReg = derive2 { name="GSReg"; version="1.16.0"; sha256="08fasaa8inivgs3li8z0yhs2qaa878lrjymk67f8622wlskvmqcd"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; - GSVA = derive2 { name="GSVA"; version="1.30.0"; sha256="0q8jwmxv2w5m7z4i7ggdzm2z627484vn5rm0qfxkkqna3hpjnl4i"; depends=[Biobase BiocGenerics geneplotter GSEABase shiny shinythemes]; }; - GUIDEseq = derive2 { name="GUIDEseq"; version="1.12.1"; sha256="1z6y53z58rmvhaw0qd69xfh45fjcmz0r5m02l3lxkxr7b2ca3vcf"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table GenomeInfoDb GenomicAlignments GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; - GWASTools = derive2 { name="GWASTools"; version="1.28.0"; sha256="1g039bg6pcbxnz9zyzknrl9qx6wzncqjw4lpiy1lq4pc91lqzjln"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; - GateFinder = derive2 { name="GateFinder"; version="1.2.1"; sha256="1figmf8cpz1mfrcz69jfrxprl88aw01jb30pq3bi2n1r3dyvyxzp"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; - GenRank = derive2 { name="GenRank"; version="1.10.0"; sha256="1fs9kfpm1xcdkyfc52hyysxwdb86aghcgig0jam3cvvfgnpm4xk9"; depends=[matrixStats reshape2 survcomp]; }; - GenVisR = derive2 { name="GenVisR"; version="1.14.2"; sha256="1sidsnzz6hfw072fk5n4i2v7ib9p0fm77p1vf26kgm0xi32ld679"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI FField GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; - GeneAccord = derive2 { name="GeneAccord"; version="1.0.0"; sha256="1g1rjgvqnf3bqa4phj0q4gzrm3y6ijbxzyjz83ilwdmwxd4vs5rw"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; }; - GeneAnswers = derive2 { name="GeneAnswers"; version="2.24.0"; sha256="0cx6k2m3cllj0hvfmznkydwnw96q5a6k4781jiix7n9j97ys1rf5"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; }; - GeneBreak = derive2 { name="GeneBreak"; version="1.12.0"; sha256="049876x0665zv2apxf48hc5yqi7nbh89sqxlgyfqc2vk4knjgkbj"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; - GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.28.0"; sha256="12ww6hlgpxchlvrcc0va4x0ayb3119kakmm4yfscbp2xiy1dlinj"; depends=[Biobase PGSEA]; }; - GeneGA = derive2 { name="GeneGA"; version="1.32.0"; sha256="1z83rrlp82q56wp3ywbacrh8ws5rhqn572p94hqj895jb3b2w3km"; depends=[hash seqinr]; }; - GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.8.0"; sha256="12bx94xw3pmsnwqb4ksgz9ydn8581x2pdvbdba8p7cwcwbkp2lfk"; depends=[data_table FactoMineR GenomicRanges GGtools igraph IRanges kernlab mvtnorm plspm rioja Rsamtools snpStats]; }; - GeneMeta = derive2 { name="GeneMeta"; version="1.54.0"; sha256="0cwnhr98sc2xb9y7k4c502r1s1pwlwimpajfp7q34qs3w10sj8my"; depends=[Biobase genefilter]; }; - GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.24.1"; sha256="1hjaqw2zzyszkrp38mki04bljcpsxbdxf93bkcccq9x4yrv0lgas"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; - GeneOverlap = derive2 { name="GeneOverlap"; version="1.18.0"; sha256="1p87ngk0lfbb86hwx63x4xjnw77xslh5a7136l1dwia24r9dccls"; depends=[gplots RColorBrewer]; }; - GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.38.0"; sha256="1f266nq1179gyxqwn0pbbwia04hsshs4653flgm2730cyczq58ki"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; - GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.26.0"; sha256="1kv81bn9kr3lf41zhixr56ipsxf2ig1zny742494r3j8d4wi947p"; depends=[Biobase limma MASS survival]; }; - GeneSelector = derive2 { name="GeneSelector"; version="2.32.0"; sha256="0hjrwj7z67j6rmfvcd44j4284v3dq7qjcm24arnfskja5zk8zb6j"; depends=[Biobase limma multtest samr siggenes]; }; - GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.2.1"; sha256="1rqw74rj3x9f4sslsamsz7g1k835qp76qhxz7i7sxvgi3gv21m9g"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; - GeneticsDesign = derive2 { name="GeneticsDesign"; version="1.50.0"; sha256="1pzqdrny4hx6sxnc9glhb5plgrahfdckmcr7symykcc8d896payl"; depends=[gmodels gtools mvtnorm]; }; - GeneticsPed = derive2 { name="GeneticsPed"; version="1.44.0"; sha256="00v32167gl0kkglrzl3xm5bw7p8mfc933k074mf9lpbbf9s1liy7"; depends=[gdata genetics MASS]; }; - GenoGAM = derive2 { name="GenoGAM"; version="2.0.3"; sha256="09c7bk6jmfslr5clnrxp8f9s1fkq83w51nbj25akl3b8p5y5nagh"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; }; - GenomeGraphs = derive2 { name="GenomeGraphs"; version="1.42.0"; sha256="0n3nbhgwnd09fnn7pyaa8n46hhjrz1gkvzbjjf7p9clv6p937y18"; depends=[biomaRt]; }; - GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.18.2"; sha256="07bm35jcczpyxap0b3gky4b28z38z423sngzsm19d9krjxr76b5p"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; - GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.18.1"; sha256="1maslav2r34wjyzh2nlwa862in1ir7i5xk57nw2nlfh5gqy112jd"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; - GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.6.0"; sha256="00xlskvrcjmj28mqkdi2d4ksqsb603g6wckqvzqyjr417xyyanrl"; depends=[dplyr GenomicRanges httr IRanges jsonlite lazyeval magrittr rappdirs readr S4Vectors SummarizedExperiment xml2]; }; - GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.34.8"; sha256="1sxp86hdsg32l2c85jgic65gy92d8kxsm01264hrx6yikdhicjax"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; - GenomicFiles = derive2 { name="GenomicFiles"; version="1.18.0"; sha256="0qf2yj4lfnnk64fk125n8sqms01shfqiik04nasx2z3k129ykpxp"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.16.0"; sha256="0zy5isp2lqpjm0n0n1gly5bs4izn22yciibyqrnlrr60rmn5s67q"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; - GenomicRanges = derive2 { name="GenomicRanges"; version="1.34.0"; sha256="0bgh14d15dpf2iy36qinw45r6n45rqkf0ghazrdl3jfva6vbrb29"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; - GenomicScores = derive2 { name="GenomicScores"; version="1.6.0"; sha256="0lrhkcblvnki6kncwpavs01gbcz22yza6ma8zvfmbrrkfaxqzh8n"; depends=[AnnotationHub Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors XML]; }; - GenomicTuples = derive2 { name="GenomicTuples"; version="1.16.0"; sha256="1d5bdsrs521rxnwiy2xg09d95p45n68dsqq17m4xw3xnfyfzpn3s"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - Genominator = derive2 { name="Genominator"; version="1.36.0"; sha256="0lv8ar4z086k8hfjl187klv4yqsb2dawp0xvly6bz6pj3prrih50"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; }; - Glimma = derive2 { name="Glimma"; version="1.10.1"; sha256="1ihrww55sa7ipi1rpp0rmn081sbqdwdmm5mz30zfrjr1xxqcdbcv"; depends=[edgeR jsonlite S4Vectors]; }; - GlobalAncova = derive2 { name="GlobalAncova"; version="4.0.0"; sha256="1fzd5122z8d68f4brsp2cv8bqcz9yjh5p41pgn6phqkkzjwj9ivg"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; - GoogleGenomics = derive2 { name="GoogleGenomics"; version="2.4.0"; sha256="0xcj10r85hxh5qy43cjb6ypd849b5wphhhv528simxq4glhgrhxp"; depends=[Biobase Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; }; - GraphAT = derive2 { name="GraphAT"; version="1.54.0"; sha256="1xfd0i0j1fai58c15mc3lrg2jc4iwswyfpyg0ff5hnyhmgr3wnsa"; depends=[graph MCMCpack]; }; - GraphAlignment = derive2 { name="GraphAlignment"; version="1.46.0"; sha256="1qql33ikps9x0dkvc31sxvyf8w119ax7519v5bv35s3i5yxh16i6"; depends=[]; }; - GraphPAC = derive2 { name="GraphPAC"; version="1.24.0"; sha256="0dwh3xshp74isq3rljlivks04mw4r0vgzg74qwyc2ar5b2j96bbg"; depends=[igraph iPAC RMallow TSP]; }; - GreyListChIP = derive2 { name="GreyListChIP"; version="1.14.0"; sha256="1hsjv4r88ldb7pgl5a3im8vdhmbiaj0rrn0clij7jfh5p5r81r1r"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; - Guitar = derive2 { name="Guitar"; version="1.20.1"; sha256="1d4j54jdnsi8gi6p0kk6zxkk6kzd1r1k77mw142xlvh8b6zrl3nq"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer]; }; - Gviz = derive2 { name="Gviz"; version="1.26.5"; sha256="1dpkcaar7qgzg3vgafvkplprhwmhzpb7ph009kr6ajm36hx4z81c"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; - HDF5Array = derive2 { name="HDF5Array"; version="1.10.1"; sha256="1qwdsygcadl58qj598hfyvs8hp0hqcl9ghnhknahrlhmb7k2bd2d"; depends=[BiocGenerics DelayedArray IRanges rhdf5 S4Vectors]; }; - HDTD = derive2 { name="HDTD"; version="1.16.0"; sha256="1girysaq3w4vfmrdb4vx2g0z9f4nb7ly44b72yhvw9fxsdjzbsc5"; depends=[Rcpp RcppArmadillo]; }; - HELP = derive2 { name="HELP"; version="1.40.0"; sha256="0l6ysv1wdivimvn895alshz6v6avvp7y2gmdphg4iqrmvmjzsd36"; depends=[Biobase]; }; - HEM = derive2 { name="HEM"; version="1.54.0"; sha256="0nkxr9kihihmvap24ir3mgzyq5zq2ng484z9byq5yrbm69wrk887"; depends=[Biobase]; }; - HIBAG = derive2 { name="HIBAG"; version="1.18.1"; sha256="0wgkvqkyv526hdq5n3z27qfk1axbpj5ab6rdlrvjf4fw1v54whmv"; depends=[]; }; - HIREewas = derive2 { name="HIREewas"; version="1.0.2"; sha256="1l0q9x8c4fapa3qkcb3ny3bfvlwwmyl1mvv1hmxqw514ch5ylaiy"; depends=[gplots quadprog]; }; - HMMcopy = derive2 { name="HMMcopy"; version="1.24.0"; sha256="0kn9cqslx6hf70r2gr8x7dwcmvgnf9c3hxrwmvr4vbkl4d3xg8ic"; depends=[geneplotter IRanges]; }; - HPAanalyze = derive2 { name="HPAanalyze"; version="1.0.0"; sha256="1z17384m893wyf7a9v31ghcmsfvly8llbzh98kjz91a6mlqj2aqf"; depends=[cowplot dplyr ggplot2 hpar magrittr readr reshape2 tibble tidyr XLConnect xml2]; }; - HTSFilter = derive2 { name="HTSFilter"; version="1.22.1"; sha256="18fb3xl39n4n6n98bw2lbfrncg1m226yyx6v8cmrcgz88k0wqjrc"; depends=[Biobase BiocParallel DESeq DESeq2 edgeR]; }; - HTSanalyzeR = derive2 { name="HTSanalyzeR"; version="2.34.1"; sha256="1c9qajkfnhpn5a2lywn8bh467pwzzqx7gc4f2pns0jr911fq6fyb"; depends=[AnnotationDbi biomaRt BioNet cellHTS2 graph GSEABase igraph RankProd]; }; - HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.12.0"; sha256="1rj81n21y6n4zlh0ck2i5zxani6hryb7xzf8azl03qk6q9yy09c5"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; - HTqPCR = derive2 { name="HTqPCR"; version="1.36.0"; sha256="15raybys2fks10a5w1084yy5sx7r4n61rran7xk7yp0cifg9k8ji"; depends=[affy Biobase gplots limma RColorBrewer]; }; - Harman = derive2 { name="Harman"; version="1.10.0"; sha256="0j116k1gkxxbg210y4knc0wdbqjmb2ql72pzsh9r07zcaw2y8fzj"; depends=[Rcpp]; }; - Harshlight = derive2 { name="Harshlight"; version="1.54.0"; sha256="133b98p7b9shxz4nf6qg9qs5bb8yqxdw83cljjblxh5nngpm0s5b"; depends=[affy altcdfenvs Biobase]; }; - Heatplus = derive2 { name="Heatplus"; version="2.28.0"; sha256="0drspjzgb23ra2kdvpxhsd8mdifsf97fcf668llyz2hr0r39fc48"; depends=[RColorBrewer]; }; - HelloRanges = derive2 { name="HelloRanges"; version="1.8.0"; sha256="1brx8bj4xxn63iwfv7ys1fzw7aa1ir8k6jhdq26rzpk973nl6cyy"; depends=[BiocGenerics Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - HiCBricks = derive2 { name="HiCBricks"; version="1.0.0"; sha256="0w3qw22jln44qxx635miaa807q08w010gad7bnqwr0z0zpwrw769"; depends=[BiocFileCache curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges R6 rappdirs RColorBrewer reshape2 rhdf5 S4Vectors scales stringr viridis]; }; - HiCcompare = derive2 { name="HiCcompare"; version="1.4.0"; sha256="08sk4sgjnjchyl1p3dbgr0yjbxl5qg35k4l5gzs08xa9pypw9jjq"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq S4Vectors]; }; - HiTC = derive2 { name="HiTC"; version="1.26.0"; sha256="11f96k1707g6milpjgnrjf3b5r42hsrxhb5d8znkcr3y3mrskdbj"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; - HilbertCurve = derive2 { name="HilbertCurve"; version="1.12.0"; sha256="1yagxajf5paj45a35d1l9aqb5mxwrh06b5jcrw2gldgndmxss9a8"; depends=[circlize GenomicRanges HilbertVis IRanges png]; }; - HilbertVis = derive2 { name="HilbertVis"; version="1.40.0"; sha256="1b6cfzycskklhxp4fw8hyxgnxdrzx047n2igrqdhbh8pv59cdsfa"; depends=[lattice]; }; - HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.40.0"; sha256="1qjfbgzzhj54fvgbvzlk37n1p32bc2vbf2yqkbn5y5ml6hsnmccw"; depends=[HilbertVis]; }; - HybridMTest = derive2 { name="HybridMTest"; version="1.26.0"; sha256="1xjykw1j81bai77nhxhxyib5z118isfr755q700934zh8zmsra61"; depends=[Biobase fdrtool MASS survival]; }; - IHW = derive2 { name="IHW"; version="1.10.1"; sha256="10wqasl8k2j3y5qvak3xr2xj6symk656xww1y5n2l22nz832j19n"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; - IMAS = derive2 { name="IMAS"; version="1.6.1"; sha256="0dy56awxbjkqx3xlafdz9p8prh5qk5ivgh1cp1gp69aph99xyrkf"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; - IMMAN = derive2 { name="IMMAN"; version="1.2.0"; sha256="1z8bxi7szjqzp630yg1hh1jkswy4iqnly325f11bhkaj8d04df21"; depends=[BiocFileCache Biostrings igraph seqinr STRINGdb]; }; - IMPCdata = derive2 { name="IMPCdata"; version="1.18.0"; sha256="0qqdpi4g29kf3y2cj7y3db40myacl368alc72lrv1qbw3qncjyjd"; depends=[rjson]; }; - INDEED = derive2 { name="INDEED"; version="1.0.1"; sha256="0w5h7zjalvz595fgz5ds5y4vxmny00psg60rwhjdjsh3z5rh6hwm"; depends=[devtools glasso]; }; - INPower = derive2 { name="INPower"; version="1.18.0"; sha256="074fylal7rn880vidi10d78s4zcxakq8f4gcxlgpq2hg0ivhd8rk"; depends=[mvtnorm]; }; - INSPEcT = derive2 { name="INSPEcT"; version="1.12.2"; sha256="1ykkr15b4bc2carwppf9yxzpl2n6lqpc6z6i2qy37vc6xffzgdx4"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve GenomicAlignments GenomicFeatures GenomicRanges IRanges plgem preprocessCore pROC rootSolve Rsamtools S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - IONiseR = derive2 { name="IONiseR"; version="2.6.0"; sha256="01lqisdlsvym8nhgpzn7lpcddk9lv9253dy9v65r2dicb5xqhj00"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; - IPO = derive2 { name="IPO"; version="1.8.1"; sha256="0az0wvbnanaaviv4z91q4qa2zh7rjbmgybh4s78z9426cfk2yz7g"; depends=[BiocParallel CAMERA rsm xcms]; }; - IPPD = derive2 { name="IPPD"; version="1.30.0"; sha256="19g39k2cxfrbfh8hzmwk6hh67mp3na8447kd7jrdshd6zd2raaas"; depends=[bitops digest MASS Matrix XML]; }; - IRanges = derive2 { name="IRanges"; version="2.16.0"; sha256="0ljppsk611xi72gc8mbdx1311b63b1ijd401jz5xmxk5frla1nc1"; depends=[BiocGenerics S4Vectors]; }; - ISoLDE = derive2 { name="ISoLDE"; version="1.10.1"; sha256="1iv32al2z01dgaqfiawx03ga1b380qkhxwi82r9aav3ry42brpmg"; depends=[]; }; - ITALICS = derive2 { name="ITALICS"; version="2.42.0"; sha256="1k55pd3zz9zzwc04m1cjlv1ib3w78n8qzxdhzhpw0pwaw6bzfpmr"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; - IVAS = derive2 { name="IVAS"; version="2.2.1"; sha256="1spqlmlgrdcw1679g1j15rycwadnhwkwbaqag9wcn5prnn27xx88"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; - IWTomics = derive2 { name="IWTomics"; version="1.6.0"; sha256="0xn12qjac2kxpyvpm8ly58q41cqz0v3q6pl6cn7hb0lvxcplp86s"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; - Icens = derive2 { name="Icens"; version="1.54.0"; sha256="0l70vj53cnvgp5ls205ign47zhl12xbaxl5hdkjs73gbdvx2aagk"; depends=[survival]; }; - IdMappingAnalysis = derive2 { name="IdMappingAnalysis"; version="1.26.0"; sha256="0s6s02awa5i86rcp12ijaqb8cga00kpwiap2nj6s2jdg3kh1ady6"; depends=[Biobase boot mclust R_oo rChoiceDialogs RColorBrewer]; }; - IdMappingRetrieval = derive2 { name="IdMappingRetrieval"; version="1.30.0"; sha256="1knaavzdvm1iz6crhqhxsxhvlrpa9k6n6d82q21w6qag8lkvwc2x"; depends=[AffyCompatible biomaRt ENVISIONQuery R_methodsS3 R_oo rChoiceDialogs RCurl XML]; }; - IdeoViz = derive2 { name="IdeoViz"; version="1.18.0"; sha256="067bd18pb3xyw58xxl0fxa09kcyh4dhdzxbci6i7b82fa17s9hkb"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; - Imetagene = derive2 { name="Imetagene"; version="1.12.0"; sha256="0lh15nqjxwgjlhhzrrjj9bpbbkxnq2nlgx3v4fik6q4d5rqx0zbb"; depends=[d3heatmap ggplot2 metagene shiny shinyBS shinyFiles shinythemes]; }; - ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.10.5"; sha256="15j5f8vxl0j135kcc69g9xpkgdcipjhj0slgd52c818hgdbyj4zk"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots gtools heatmaply httr pheatmap plotly preprocessCore R6 reshape2 rjson Rlabkey rmarkdown scales]; }; - ImpulseDE = derive2 { name="ImpulseDE"; version="1.8.0"; sha256="0jiqclcm0w6nh7j3w5wqv0c6lw0pyn4wczld2fmkqyv71mshmakn"; depends=[amap boot]; }; - ImpulseDE2 = derive2 { name="ImpulseDE2"; version="1.6.1"; sha256="0zbrkwaspwaq9aa9il4ahn5lnhbyz8cair5lx354pr1whm3wn8v3"; depends=[Biobase BiocParallel circlize ComplexHeatmap cowplot DESeq2 ggplot2 knitr Matrix S4Vectors SummarizedExperiment]; }; - InPAS = derive2 { name="InPAS"; version="1.14.2"; sha256="1z0lk2a5wfaykq4r7rmfrc4d4kcg4icygxri4y96i467a3v48m2i"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; }; - InTAD = derive2 { name="InTAD"; version="1.2.3"; sha256="1vahq4rh8icka1qqwnqvw3y5hbrss0nnpyll5bvwnm9514sp030w"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; - IntEREst = derive2 { name="IntEREst"; version="1.6.2"; sha256="1y9ilxlqi71hy0jzar5bbdn9y9xx7nbfzi6rgkdmf8mpdin5r62f"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; - InterMineR = derive2 { name="InterMineR"; version="1.4.1"; sha256="1v11h22nw3chxkscdmbc9z4186x885lpnh537yyijp9429bab44l"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; - InteractionSet = derive2 { name="InteractionSet"; version="1.10.0"; sha256="0wirfhmpmkmnmhbqslw4bzvi2msqyqpjy1rrwr5qbd9k5rhx3bzb"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; - IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.4.0"; sha256="0cv7g8cca447gvzy13xpx7h5sxg2w9n3pmj74rfqpbcpd1m9h2p4"; depends=[FGNet igraph knitr]; }; - IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.0.5"; sha256="0qvcck4ky4mlib49xfmmkhmv4ndxnbfn8bssim8m5c7xl5zqxj7a"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; - IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.18.0"; sha256="0k7l3h56m4l7l9d7c1vg06dg6a986n4v7v0w6yrmpspajkx302ar"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; - IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.4.0"; sha256="1fbrbshan00r8qidz1yran84hj4higf1g4iw1qx58h13laqs1yi0"; depends=[Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer readr reshape2 rtracklayer stringr tximport VennDiagram]; }; - JunctionSeq = derive2 { name="JunctionSeq"; version="1.12.1"; sha256="1azc7sb3yga6v98x4g97g9pj90yk9kzj6m8s4zfaz3ggsrz62m6w"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter geneplotter GenomicRanges Hmisc IRanges locfit plotrix Rcpp RcppArmadillo S4Vectors statmod stringr SummarizedExperiment]; }; - KCsmart = derive2 { name="KCsmart"; version="2.40.0"; sha256="1jhw1w964hvjxcxxzyx03mm5w98a15x4hak9r1bbhi1q38x0vs6p"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; - KEGGREST = derive2 { name="KEGGREST"; version="1.22.0"; sha256="0blpd5a7whd2sswfhqd17h58hg06ymaf80gapdr9ja43hnnlj309"; depends=[Biostrings httr png]; }; - KEGGgraph = derive2 { name="KEGGgraph"; version="1.42.0"; sha256="0ry0pfqc61r0cz98j6zlyhh4qh6568l0w0j61xmysayyp046mgy3"; depends=[graph XML]; }; - KEGGlincs = derive2 { name="KEGGlincs"; version="1.8.0"; sha256="188c5cq2yrcwd991cicgh9ivh5xingdd6d46hahvwmvz3y9qyi7a"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; - KEGGprofile = derive2 { name="KEGGprofile"; version="1.24.0"; sha256="140f834dlwry5h6kl3z2zm8ch31syl72l4jkmri4vwy5cyvin5bg"; depends=[AnnotationDbi biomaRt KEGG_db KEGGREST png RCurl TeachingDemos XML]; }; - KinSwingR = derive2 { name="KinSwingR"; version="1.0.3"; sha256="156ins4fqr4kdc5pnikl71pn2ppqknfxf1dcl3ffk82sby1xclkd"; depends=[BiocParallel data_table sqldf]; }; - LBE = derive2 { name="LBE"; version="1.50.0"; sha256="1padaxr7hdqrbwgkma4r64ndxhig7ygl7dvbixziz4qdl7cwi869"; depends=[]; }; - LEA = derive2 { name="LEA"; version="2.4.0"; sha256="1bbcsk6k2w8bbjksbnvd7zi4m1zldmjj5pwspjcciqssk10abwn9"; depends=[]; }; - LINC = derive2 { name="LINC"; version="1.10.0"; sha256="1lbpqdhiyh52m3jrsqlwshaz0ncflx5gpyp7lknw4z1vgyvi4ad5"; depends=[ape Biobase clusterProfiler DOSE ggplot2 ggtree gridExtra org_Hs_eg_db png Rcpp ReactomePA reshape2 sva]; }; - LMGene = derive2 { name="LMGene"; version="2.38.0"; sha256="0ynyknm86lvcimva5krmy3xwi2ni7js6jrvkkjsy7w3q90cr2q6q"; depends=[affy Biobase multtest survival]; }; - LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.8.1"; sha256="0q416vx4frw1dm29yfg06laxkp8ns4mk17p1fw2ir96l44awam7y"; depends=[CAMERA xcms]; }; - LOLA = derive2 { name="LOLA"; version="1.12.0"; sha256="1ysdxkaarwwzw06c9d5xh617g284wk57wpj9lbkfv8rrxkla33d0"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; - LPE = derive2 { name="LPE"; version="1.56.0"; sha256="0ryvbkjx9x394a9za4wyy6rk9avjpwqsgdz6rywp9rr4di551a4h"; depends=[]; }; - LPEadj = derive2 { name="LPEadj"; version="1.42.0"; sha256="11pvvh42idpi7636wrm52whaavl4wnbwki1p82p196m0rvac1jy5"; depends=[LPE]; }; - LRBaseDbi = derive2 { name="LRBaseDbi"; version="1.0.0"; sha256="0idf0gn593b6k0fnpkaphh59cpr6a8582namxrvik1b6zpi5kfzl"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; - LVSmiRNA = derive2 { name="LVSmiRNA"; version="1.32.0"; sha256="14880gimbgw7lmvdq965nm3jgkss1qfakl8xnf66kx4f8mczrvps"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; }; - LedPred = derive2 { name="LedPred"; version="1.16.0"; sha256="1nimsxm841fnqn0v0x0laq5dcwrp46k9vxaxwd86ayn9sdlgx6fj"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; - LineagePulse = derive2 { name="LineagePulse"; version="1.2.1"; sha256="1632g54pyip4dvsq6m08qhfl4xgcfphcw5rix7mr9nf8qh1hrbns"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - Linnorm = derive2 { name="Linnorm"; version="2.6.1"; sha256="1qgk8m5kc409flqxs3vnf228v3z0112q8py9hgfgyiwvi6yzdbp6"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; - LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.36.0"; sha256="0hz60m9m0098mqwajw83xkraajlbh4q8617d85mfjcbdgmc483a1"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; - Logolas = derive2 { name="Logolas"; version="1.6.0"; sha256="0asi528yb65vwdkxxlsdv9g06fr2y5mzxa3m1669byjb6fjzzs1y"; depends=[Biostrings ggplot2 gridBase LaplacesDemon SQUAREM]; }; - LoomExperiment = derive2 { name="LoomExperiment"; version="1.0.4"; sha256="18pqixrnln5d60g6a5nay2zw4984bnllqzrpylwx2nrxsindp9n1"; depends=[DelayedArray GenomicRanges HDF5Array rhdf5 rtracklayer S4Vectors SingleCellExperiment SummarizedExperiment]; }; - LowMACA = derive2 { name="LowMACA"; version="1.12.1"; sha256="08lh0q88ixad11hgkxs0y1bc7pi3a8f1a70nqxmdwkgghcfziirp"; depends=[BiocParallel Biostrings cgdsr data_table httr LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; - LymphoSeq = derive2 { name="LymphoSeq"; version="1.10.0"; sha256="024d13hrw0s0zmza9bd8nm9s79imwajqvzxiaxj5348pj2d212hr"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; - M3C = derive2 { name="M3C"; version="1.4.1"; sha256="0l9063bn0sfcq5qxghaj8f98x0pg91fwsd8l64ga8d7pnlm8i5fm"; depends=[cluster dendextend doParallel doSNOW foreach ggplot2 Matrix matrixcalc NMF RColorBrewer Rtsne sigclust survival]; }; - M3D = derive2 { name="M3D"; version="1.16.0"; sha256="0a7xs3kqvyxswsa4zcdakij4rvpv1pr4fmplnvxyskhh2zps7xyl"; depends=[BiocGenerics BiSeq GenomicRanges IRanges Rcpp S4Vectors SummarizedExperiment]; }; - M3Drop = derive2 { name="M3Drop"; version="1.8.1"; sha256="0bzxv4lnmbz4d7y1c2w7i013rfjscnj1ndb05k9n1i4c9gsknqya"; depends=[bbmle gplots numDeriv RColorBrewer statmod]; }; - MACPET = derive2 { name="MACPET"; version="1.2.0"; sha256="0799d3pr5b6g7xbi75pf693768nspdc73qay72naghyql6g91s96"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; }; - MADSEQ = derive2 { name="MADSEQ"; version="1.8.0"; sha256="1b7d6niz8lhvd17xjl4hy1yyki049cg6wd3g8wp38bm3zs6dzfd1"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; - MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="1.2.3"; sha256="1d2lllsz2jdqma1ifdg7xj9fby85az7bifn0h0hj705m6dyla42z"; depends=[biomaRt bladderbatch clusterProfiler data_table DOSE ggExtra ggplot2 ggrepel ggsci gridExtra pathview pheatmap png sva]; }; - MAIT = derive2 { name="MAIT"; version="1.16.1"; sha256="0fg3cah81c4gzm3hw590h4grrja2qgfs8mrpkbifrgsclbybnp95"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; - MANOR = derive2 { name="MANOR"; version="1.54.0"; sha256="102s71adp93n47sz2hcqs5ihykwcvha6sz7v24p409a7rj8ary38"; depends=[GLAD]; }; - MAST = derive2 { name="MAST"; version="1.8.2"; sha256="0rhx655dza0m6yg9jcfz2nmxqahvxx2l91kqgyp7qai0bzz9d9ix"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; - MBASED = derive2 { name="MBASED"; version="1.16.0"; sha256="0046yjpjdczxjqkpvsdsj8fnah1kmz4m038k49laqlrricyl6f2f"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; - MBAmethyl = derive2 { name="MBAmethyl"; version="1.16.0"; sha256="05jwqlvmjhcfqjqxv6m5mmc72q8lfv2qqwm0f8j1dddpvvyh8fzd"; depends=[]; }; - MBCB = derive2 { name="MBCB"; version="1.36.0"; sha256="0yizhggn77arg1pnl3qd25xc5awwv1f1hi3mk6p2c5pdk48mz679"; depends=[preprocessCore tcltk2]; }; - MBttest = derive2 { name="MBttest"; version="1.10.0"; sha256="05cwwqj8qjj66ndy2hdx2jxna07xjqg7qv4z1gar6r91p482zsp0"; depends=[gplots gtools]; }; - MCRestimate = derive2 { name="MCRestimate"; version="2.38.0"; sha256="1hl5bqibajwscir94dla23544sg866hqx1h793fj7m38xcjhxlzn"; depends=[Biobase e1071 golubEsets pamr randomForest RColorBrewer]; }; - MCbiclust = derive2 { name="MCbiclust"; version="1.6.1"; sha256="1zjhviz3n0w72kwd0czkxddm23jj8876174lbjc85fd8piqf7x6f"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; - MDTS = derive2 { name="MDTS"; version="1.2.0"; sha256="1h0vpbi62j0g1cdp06xkp0y4aymnqqhp7frhwi6f7hsiviaz2c0p"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; - MEAL = derive2 { name="MEAL"; version="1.12.0"; sha256="05cfyq3fffxj802cyh3bghfn2gg6z0yhy2spii9n8pxmsfcsr7pn"; depends=[Biobase BiocGenerics DMRcate GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; - MEDIPS = derive2 { name="MEDIPS"; version="1.34.0"; sha256="1bb8k0jzxfji79qxb4v6pdp9jyf6hv83g5mmqj74k3x2cglycwia"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; - MEDME = derive2 { name="MEDME"; version="1.42.0"; sha256="0yg04lghqc3sfyakf8id3dc5gd0bfhaf9lp903g5jpiai5779byy"; depends=[Biostrings drc MASS]; }; - MEIGOR = derive2 { name="MEIGOR"; version="1.16.0"; sha256="1jxl2bcsbrlab6ss66388l64k5xcjr5g3gpgya2rk4yq237mghl6"; depends=[CNORode deSolve Rsolnp snowfall]; }; - MGFM = derive2 { name="MGFM"; version="1.16.0"; sha256="08ngcr1a979amjdl8x5a7mn1zdvrpa4h35rkhimi9kr0fn68kj34"; depends=[annotate AnnotationDbi]; }; - MGFR = derive2 { name="MGFR"; version="1.8.1"; sha256="1v85b82algx79kbk25inan96kymnpchplbl5r15vyxavvkqzd66a"; depends=[annotate biomaRt]; }; - MIGSA = derive2 { name="MIGSA"; version="1.6.0"; sha256="19gfb98qmb8wbi343lw92sf7d29xliyzb3wz095pd2npsjr69qkl"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz RJSONIO vegan]; }; - MIMOSA = derive2 { name="MIMOSA"; version="1.20.1"; sha256="0vj7z95pjq62glg1akipydbybxsxc69yjpqrffpc33kqhf46nhfb"; depends=[Biobase coda data_table Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; }; - MIRA = derive2 { name="MIRA"; version="1.4.1"; sha256="0wy4iisp6c0kfns34pr5am055b1x7wdnbdh8lgr5ll91wxz48sg9"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; - MLInterfaces = derive2 { name="MLInterfaces"; version="1.62.1"; sha256="1h0x1p2h8x1h276wxx6kcnb4c4s5sglnmd58iigl81a224x8gxwp"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter MASS mlbench pls RColorBrewer rpart sfsmisc shiny threejs]; }; - MLP = derive2 { name="MLP"; version="1.30.0"; sha256="03h7k5v620x2hw6k3gddaba40fwh6zvpmlnhf6mcml7ldsni95y9"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; }; - MLSeq = derive2 { name="MLSeq"; version="2.0.1"; sha256="1jaw2blnl7jsd2px069af7zqk69d04bma8m5vpqb941vx6yhk095"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma plyr sSeq SummarizedExperiment xtable]; }; - MMDiff2 = derive2 { name="MMDiff2"; version="1.10.0"; sha256="0ljdr6y3plzpf9j70ghw41x3jpb8p52lqb9987gm1mw7lxw9iraf"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; - MODA = derive2 { name="MODA"; version="1.8.0"; sha256="0jarqlyfx81pamdl5z1kx96ri6kjq59lv144ifw8ga6kzs5bng58"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; - MPFE = derive2 { name="MPFE"; version="1.18.0"; sha256="02lnymmsl1k770jh41sak6dxkzsb0c38934aslbd890dibc2c04i"; depends=[]; }; - MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.0.1"; sha256="0nwd28jcr8dkhi3v71l9dd83dfl4k51sjdnjmml9vbdcznps1ffg"; depends=[BiocParallel progress SummarizedExperiment]; }; - MSGFgui = derive2 { name="MSGFgui"; version="1.16.1"; sha256="0qy7k9l88qna24kmrc2ikg326dk1jwcrl3908p74lh42sr5wxlzj"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; - MSGFplus = derive2 { name="MSGFplus"; version="1.16.1"; sha256="0qbyb4wycf6qbkx83rh1n8hc664mw542x6jw658aqhdnfl3gsvxq"; depends=[mzID ProtGenerics]; }; - MSnID = derive2 { name="MSnID"; version="1.16.1"; sha256="077n6ljcnnl7q4w0qj8v46vm4sjk9vzzfqf7wsc6lz0wmyzqdng3"; depends=[Biobase data_table doParallel dplyr foreach iterators MSnbase mzID mzR ProtGenerics R_cache Rcpp reshape2]; }; - MSnbase = derive2 { name="MSnbase"; version="2.8.3"; sha256="1kl1d7byphnfpmbl5fzbgs68dxskhpsdyx7ka51bpfn0nv3pp492"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp S4Vectors scales vsn XML]; }; - MSstats = derive2 { name="MSstats"; version="3.14.1"; sha256="1bgvdq1mfq6rxjf5ag2slrhy4056906wghsirrymf53nw3qz5g6s"; depends=[data_table doSNOW dplyr foreach ggplot2 ggrepel gplots limma lme4 marray MASS minpack_lm preprocessCore randomForest reshape2 snow stringr survival tidyr]; }; - MSstatsQC = derive2 { name="MSstatsQC"; version="2.0.1"; sha256="1f6gv1fqm5h6xs91wc1bamyri47qggb872qzriwzvff7ydn0q1ag"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics RecordLinkage]; }; - MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.2.1"; sha256="1k7dhiayf885ax1mg03yg1w4mamk3j1gsm7phszxl3i0j3c2gks7"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly RecordLinkage shiny]; }; - MSstatsTMT = derive2 { name="MSstatsTMT"; version="1.1.2"; sha256="0aaw3qillcfrjczdmd7s21v551hclnq8fn2zvn91wyr4i82q43rr"; depends=[data_table dplyr ggplot2 limma lme4 matrixStats MSstats nlme reshape2 tidyr]; }; - MTseeker = derive2 { name="MTseeker"; version="1.0.6"; sha256="0fsb7k6pkl15q8csygpsjrz4jvy20mfd5rfmhl7q7ffj4d7sprxh"; depends=[Biobase BiocGenerics Biostrings circlize GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR Homo_sapiens IRanges jsonlite Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VariantTools viridis xml2]; }; - MVCClass = derive2 { name="MVCClass"; version="1.56.0"; sha256="1hw36gd1z19dir6fl7j3dzqzi5p1668zbwpcz7l21hbyycv27l0j"; depends=[]; }; - MWASTools = derive2 { name="MWASTools"; version="1.6.0"; sha256="0bkl7vgyac6xhjj636vlmynq75zyp6smvjvzg1ymkgg800wylg4c"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; - MantelCorr = derive2 { name="MantelCorr"; version="1.52.0"; sha256="1z0f6g5zbxl1sqcl6rdx7y6vh637i6209ya9fsan6wi5r8rcsamn"; depends=[]; }; - MassArray = derive2 { name="MassArray"; version="1.34.1"; sha256="0hdydbpg7arsxl0v7zz7w6zrczb44ff2dap4vgwqxdk5jgh1mm4b"; depends=[]; }; - MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.48.1"; sha256="1xcr568a36b570rldy27wq4a2jn7yf5f6fddlzgx6x944jdn3ckz"; depends=[waveslim]; }; - MatrixRider = derive2 { name="MatrixRider"; version="1.14.0"; sha256="17n3s0gdj3jjlf4pangnbdb00ak62j5wvdqd8yhackhs4z9zbchb"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; - MaxContrastProjection = derive2 { name="MaxContrastProjection"; version="1.6.1"; sha256="103aqb89g5ca9vp0j3763dypwjqnzvf1dh8s6v03nrisfslwa85s"; depends=[EBImage]; }; - MeSHDbi = derive2 { name="MeSHDbi"; version="1.18.0"; sha256="1if3jrrxlrsrza7404d7banrdfbz5g1v69wydxglldzfim3g9jw3"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; }; - MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.54.0"; sha256="0s39wlfcqag15y73dapmnz0zrywsnd9flz1n7yl20r9p8dfmhv12"; depends=[]; }; - MergeMaid = derive2 { name="MergeMaid"; version="2.54.0"; sha256="07cgcfvppdvyrb0hhi24126ysdcal8vjyplqxfkqxxyjpv0p8ap8"; depends=[Biobase MASS survival]; }; - Mergeomics = derive2 { name="Mergeomics"; version="1.10.0"; sha256="16xv75q790r0apdb1yb10j6mcjs67a891av1kjf21xyp5g5bgpja"; depends=[]; }; - MetCirc = derive2 { name="MetCirc"; version="1.12.1"; sha256="07y7r4y01v26mxgfivxrhq9r80w228lxicsbxvsbb2xbb8vvjz7j"; depends=[amap circlize scales shiny]; }; - MetID = derive2 { name="MetID"; version="1.0.0"; sha256="12nrbdq4xracd6p7xz3l0dvqp4xlj34jr7wj90wmk09i89h7sfjj"; depends=[ChemmineR devtools igraph Matrix stringr]; }; - MetNet = derive2 { name="MetNet"; version="1.0.1"; sha256="0s45l7y43bhc1sha4wmhch9vfyw7xza95lyyl5ixfz28z99k08vr"; depends=[BiocParallel bnlearn mpmi parmigene ppcor rfPermute sna stabs WGCNA]; }; - MetaCyto = derive2 { name="MetaCyto"; version="1.4.1"; sha256="1yi04zy7kmikac22msynnnm3wqhy9d59qz2v8m54w8h3rn49c1c0"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; - MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.2.1"; sha256="007y4dz3mfww6vwmm5d99flgzw372hjkbbv36n8hz1gqrwy52yvp"; depends=[beanplot gplots RColorBrewer SummarizedExperiment]; }; - Metab = derive2 { name="Metab"; version="1.16.1"; sha256="0m7wd4rw0q7y53gpzi0bgn0gwf83kbdx1pjvfblnirkgwyq69f6c"; depends=[pander svDialogs xcms]; }; - MetaboSignal = derive2 { name="MetaboSignal"; version="1.12.0"; sha256="1wgpcn25cpql6dwgwpxw16w8hizny92xfbgs4rjz4dpssg9n1qq3"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; - MethPed = derive2 { name="MethPed"; version="1.10.1"; sha256="1vcy4x7p2bhpyfpj5lxwjzfm09lc3c0rkzam83837b7apz3j9sqn"; depends=[Biobase randomForest]; }; - MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.14.0"; sha256="0by77378lml6ncz53c7xkh29dayach31p3fn0jrf31x947larnzy"; depends=[Biostrings gplots seqinr stringr]; }; - MethylAid = derive2 { name="MethylAid"; version="1.16.0"; sha256="03qf2j12nq6nqfs96lsdk7jny2ak6258j5bq0brp7wmpijlnjrak"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; - MethylMix = derive2 { name="MethylMix"; version="2.12.0"; sha256="062jr6qskp3psmpirqn5aiq5mhw3k1ipyb0m16ds2i95n8v3ky5p"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; - MethylSeekR = derive2 { name="MethylSeekR"; version="1.22.0"; sha256="1nqwza5bqkn0k664j1a2p518a3pj27zwlc5pkvjbh09cjvfibyf0"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; - Mfuzz = derive2 { name="Mfuzz"; version="2.42.0"; sha256="105xk52hxc2d5yy0fy4cb0zhrpnansvyb0dzx9jc1dfjvxzq4vjg"; depends=[Biobase e1071 tkWidgets]; }; - MiChip = derive2 { name="MiChip"; version="1.36.0"; sha256="10v9vvyr4bs7l0x6cb6frhni8sa16sdllykjsbnjxd3jynvzrpy9"; depends=[Biobase]; }; - MiPP = derive2 { name="MiPP"; version="1.54.0"; sha256="08g19yw9hbrwsm630rz907dqlfs7qg2xvaby9bx3mjiwlr7d15wx"; depends=[Biobase e1071 MASS]; }; - MiRaGE = derive2 { name="MiRaGE"; version="1.24.1"; sha256="1jak07j4kfnyjhcdik4a4ihbb87sqx7mh3yajjbrm13zpvh9vyf3"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; - MineICA = derive2 { name="MineICA"; version="1.22.0"; sha256="1n10x9y5x1h06k1kv2jv3ym5n950dhcd20g34rarx0zyihd2ln4j"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; - MinimumDistance = derive2 { name="MinimumDistance"; version="1.26.0"; sha256="0rv7pgzbrscc8raa49x1nbvbp3ivr8kwdr8rf6hvfw8y1xk3rnba"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; - Mirsynergy = derive2 { name="Mirsynergy"; version="1.18.0"; sha256="19nw7yapcxvidzzdbhjzplajfmss65drqq5xrsz1ycr87jgh8h5b"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; }; - MmPalateMiRNA = derive2 { name="MmPalateMiRNA"; version="1.32.0"; sha256="045089yfj5aakabxhpjld9fa62sfr48xqb88j8m3xm7561ml20ql"; depends=[Biobase lattice limma statmod vsn xtable]; }; - MoPS = derive2 { name="MoPS"; version="1.16.0"; sha256="0wypkl5kdjmwf78pwbgdsin8fxiycfwkf3kwrbqxc7r27lplgwyj"; depends=[Biobase]; }; - MoonlightR = derive2 { name="MoonlightR"; version="1.8.0"; sha256="16jhqygppfy82h3jnldigf1mgirbh6wcrqd61nn335kgj1d016p0"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; - MotIV = derive2 { name="MotIV"; version="1.38.0"; sha256="1qrpydwc5bn8f0843qkyhw6920xk8kvq452ird0ij96g6faiv9a8"; depends=[BiocGenerics Biostrings IRanges lattice rGADEM S4Vectors]; }; - MotifDb = derive2 { name="MotifDb"; version="1.24.1"; sha256="1q454k3p4ib2z79rcgwyx9s9s7gg5j0vlhca1b579qzi3692m8xi"; depends=[BiocGenerics Biostrings IRanges rtracklayer S4Vectors splitstackshape]; }; - Mulcom = derive2 { name="Mulcom"; version="1.32.0"; sha256="0k3illh3dchd5nwa4y87v1n0lkil7p5yiqzg9v65nxv35mhkg0vv"; depends=[Biobase fields]; }; - MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.8.3"; sha256="04q1y3gkmf6s6ksd3jvxr0r13gzacrxcdgr1zd3ign0zq2ab5bli"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; - MultiDataSet = derive2 { name="MultiDataSet"; version="1.10.0"; sha256="1sr93zdirjqgsffmkv9plaqbg3rfsz8lh96mqv7xrnc3nmhmm65y"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; - MultiMed = derive2 { name="MultiMed"; version="2.4.0"; sha256="1dfcqh7px0zzgrg96r3930jxzcgvc91xlfm4q9fnn3w85nzgdnrb"; depends=[]; }; - MutationalPatterns = derive2 { name="MutationalPatterns"; version="1.8.0"; sha256="0w9lg1zs106h6rqvy8mhikq6q6q9syw6c1prcxr38ssh85rcih12"; depends=[BiocGenerics Biostrings cowplot GenomeInfoDb GenomicRanges ggdendro ggplot2 IRanges NMF plyr pracma reshape2 S4Vectors SummarizedExperiment VariantAnnotation]; }; - NADfinder = derive2 { name="NADfinder"; version="1.6.1"; sha256="0kz7dz95kdz5dz05bh7x6czrwdr1imaq1mv6bncxxhv1mffhmb9v"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; - NBSplice = derive2 { name="NBSplice"; version="1.0.6"; sha256="1nalcpj7n4qghmkrfq65xd4i0aack2yq4l2wwsy4z0sfi7gh6m49"; depends=[BiocParallel car edgeR ggplot2 MASS mppa reshape2]; }; - NCIgraph = derive2 { name="NCIgraph"; version="1.30.0"; sha256="16mxxrq6g4szig29cah2a13qp1ybsh8ci37izlq6gpxn0h00maym"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; - NGScopy = derive2 { name="NGScopy"; version="1.16.1"; sha256="1zfasfbzzay402igag1ynffz2v9ad70wdy5vs02q0api3rkkn406"; depends=[changepoint Xmisc]; }; - NOISeq = derive2 { name="NOISeq"; version="2.26.1"; sha256="1wyhhi9ydlbjlz427093mdp5ppby77n37w5c2iyxlpsdk2m2nqsn"; depends=[Biobase Matrix]; }; - NTW = derive2 { name="NTW"; version="1.32.0"; sha256="10ndg6mina5wz3w87wpv4mnbxdyj6rhvc9jqf954wmh6gj04vyin"; depends=[mvtnorm]; }; - NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.12.0"; sha256="1927ry931ckjrci6yfk3fh774bizh4yb5f7p7x1ra1yxzfizq7k3"; depends=[Biobase matrixStats Rcpp]; }; - NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.14.0"; sha256="1kisr7j27iwyxjxsylnlrqz9ac5kbwr4indg0qkc3ycdlqqxbqvl"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; - NarrowPeaks = derive2 { name="NarrowPeaks"; version="1.26.0"; sha256="06lppn4pbp0f3yb3lbpqmk7fqw6i754h9c8v1akvhg22wgb8428x"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; }; - NeighborNet = derive2 { name="NeighborNet"; version="1.0.0"; sha256="16fmsh71sx65g505mwbhkv9sf1y7niy24zpygxv3aqklqqrnk97r"; depends=[graph]; }; - NetPathMiner = derive2 { name="NetPathMiner"; version="1.18.0"; sha256="1pyqplxzmdd3sjwlr3dzhb39gfhkbd5a550inrvxh4gqnw9r2lpl"; depends=[igraph]; }; - NetSAM = derive2 { name="NetSAM"; version="1.22.0"; sha256="10wmq1vgzdsp6iyia7gqh1d685cj1nikgvygpl69hgciabn3kzz5"; depends=[graph igraph seriation]; }; - NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.0.0"; sha256="1ql62i9mgnr3vafz0yfi8zxxlkccjlrjkb4lnrxv0sshhs5kw4di"; depends=[ape Biobase car ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; - NormqPCR = derive2 { name="NormqPCR"; version="1.28.0"; sha256="1b4j0ngqlkpc1fhfnkmk6h917has6ldi1876rsincl28yfvghz25"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; - NuPoP = derive2 { name="NuPoP"; version="1.32.0"; sha256="0p1v7v5shvcbiwgi6fy1fkh55ikks6svh17f2h7biw5j29zwg878"; depends=[]; }; - OCplus = derive2 { name="OCplus"; version="1.56.0"; sha256="0brkcx3vapi7gnw8v6023j56pi6mgki26hx71fq4ldwchwrg4pxr"; depends=[akima multtest]; }; - OGSA = derive2 { name="OGSA"; version="1.12.0"; sha256="0qcnc6658ggv4is9a0s9lid41ns9845qbwd5m0l8r9qjzgmix2s7"; depends=[Biobase gplots limma]; }; - OLIN = derive2 { name="OLIN"; version="1.60.0"; sha256="0vmmxx74i3ch00xsaw60b82h7nbh8rgv6xzbzmcnpa79anaamv3l"; depends=[limma locfit marray]; }; - OLINgui = derive2 { name="OLINgui"; version="1.56.0"; sha256="03n5xlh6fhcw7mvsdaihxn0b39zyhf3f2fayql40nkcinfmbmr50"; depends=[marray OLIN tkWidgets widgetTools]; }; - OMICsPCA = derive2 { name="OMICsPCA"; version="1.0.1"; sha256="17sm8vk96z25q1mdybq6al82yrbb28sjrr40lpwc1syzjabhns2b"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; - OPWeight = derive2 { name="OPWeight"; version="1.4.1"; sha256="00xwam4vpa7jpdqz8jy66kckl92sawd2m60qwlp96l8dpm5f7kxv"; depends=[MASS qvalue tibble]; }; - ORFik = derive2 { name="ORFik"; version="1.2.1"; sha256="0x8pj6j3g8gq3i6fqgnd85s60kadq4shjr4hykf00f9zzkj3gnv9"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp Rsamtools rtracklayer S4Vectors]; }; - OSAT = derive2 { name="OSAT"; version="1.30.0"; sha256="12cswkscavbkx8cxj0kzk6gz1h8xwp24mwy53dgyr771sch76k7j"; depends=[]; }; - OTUbase = derive2 { name="OTUbase"; version="1.32.0"; sha256="0xhwa9yd0qd86j03190riff5z64h93pn7q0b6qb2awwf5zrda8fs"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; - OUTRIDER = derive2 { name="OUTRIDER"; version="1.0.4"; sha256="0wivnc4dd8zlz7305jjps3iid5sjcy3z1q6sb5yj56i81hz5734j"; depends=[BBmisc Biobase BiocGenerics BiocParallel data_table DESeq2 GenomicFeatures GenomicRanges ggplot2 ggpubr gplots IRanges matrixStats pcaMethods plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reticulate S4Vectors scales SummarizedExperiment]; }; - OmaDB = derive2 { name="OmaDB"; version="1.2.2"; sha256="16qy6p36mkw4fkyp9yis56zyn88x780767ahnqhnyzqlm9g5kv5w"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; - OmicCircos = derive2 { name="OmicCircos"; version="1.20.0"; sha256="1akb3djkq0waq1f81zi3nnv8svqf2i8w9agaac732vbdr4cf821d"; depends=[GenomicRanges]; }; - OmicsMarkeR = derive2 { name="OmicsMarkeR"; version="1.14.0"; sha256="00a8wwk0z73ipdhjlwkwz4nqpjpyylafds88g8dhz0imk8f24gnj"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; }; - Onassis = derive2 { name="Onassis"; version="1.4.5"; sha256="17s3d2wb6mnckpxaq4ppll6fwc6fag4mg9921bf3islkb7vrbxfz"; depends=[AnnotationDbi data_table DT GEOmetadb knitr OnassisJavaLibs RCurl rJava RSQLite]; }; - OncoScore = derive2 { name="OncoScore"; version="1.10.0"; sha256="1q5xirwr184fn3fbkldp5v4cwmkkpggp2xnnh3s3prl4masdf6pk"; depends=[biomaRt]; }; - OncoSimulR = derive2 { name="OncoSimulR"; version="2.12.0"; sha256="0pbq9qbxx35zzpzsc3b18qhcdwskkg5xk6pf4kgbzisa8jkjyxfd"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph nem RColorBrewer Rcpp Rgraphviz smatr]; }; - OrderedList = derive2 { name="OrderedList"; version="1.54.0"; sha256="1hvw6lc39gq867gvz426qyj79yz85k2shwlw4mnk6xaib652gqwf"; depends=[Biobase twilight]; }; - Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.10.0"; sha256="1s2rqzdmzmbif92466x2mgmbjism68c62590pj8swx853f9x668s"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges RSQLite S4Vectors]; }; - OrganismDbi = derive2 { name="OrganismDbi"; version="1.24.0"; sha256="11pyv56cy4iy095h40k6k0mpjdlh6gsb4ld3s57nfa9nd4ypx3yi"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; - Oscope = derive2 { name="Oscope"; version="1.12.1"; sha256="0dxdif1zw8vw6p8ci1nlgr6pwh6gf27r6c9q1lng79gi6x2ipv75"; depends=[BiocParallel cluster EBSeq testthat]; }; - OutlierD = derive2 { name="OutlierD"; version="1.46.0"; sha256="1xbkasaf47qmfqqrm1k3mgnjj63rv30094r0f968q7rxfpdmq90f"; depends=[Biobase quantreg]; }; - PAA = derive2 { name="PAA"; version="1.16.0"; sha256="03hd7vvkqfr369wp8r0i9y29li9q91s76wzvbh9scvqd0ngmh9cv"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; - PADOG = derive2 { name="PADOG"; version="1.24.0"; sha256="0xia09m11j70n2gfmka620pk66vjvzr1376y2lb0g18k5n6k2zxv"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGG_db KEGGdzPathwaysGEO limma nlme]; }; - PANR = derive2 { name="PANR"; version="1.28.1"; sha256="00ymf82kdgc4pqnmz9hgi9b4pk8cidg8n6icx40rcs5dmlkhl24d"; depends=[igraph MASS pvclust RedeR]; }; - PAPi = derive2 { name="PAPi"; version="1.22.1"; sha256="12hv5cf0mc243w7a95hlbgfvll7qs6wcc3vqkpg7k5giy24n8i1q"; depends=[KEGGREST svDialogs]; }; - PCAN = derive2 { name="PCAN"; version="1.10.0"; sha256="08im6jwzbnnb4z01ayiv1jk8yqna8ncg6z65bfh0ba4jjvjwywfi"; depends=[BiocParallel]; }; - PCpheno = derive2 { name="PCpheno"; version="1.44.0"; sha256="1svdqnfp7ggi29rm5la35p96vmr7nzcfy5a458f1ra0kd4a6nd5l"; depends=[annotate AnnotationDbi Biobase Category GO_db graph GSEABase KEGG_db ppiData ppiStats ScISI SLGI]; }; - PECA = derive2 { name="PECA"; version="1.18.0"; sha256="10hhwvlr5gzcal0g62zimr79a3v2cpp95cb7nafnlq8v3ndg69hd"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; - PGA = derive2 { name="PGA"; version="1.12.1"; sha256="0ss057198960hig0kdc9hgn850830cmjx48n3lbq4nk2y887grcf"; depends=[AnnotationDbi biomaRt Biostrings customProDB data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer S4Vectors stringr VariantAnnotation]; }; - PGSEA = derive2 { name="PGSEA"; version="1.56.0"; sha256="0nmgjfw32flc42qj0vih8r4nsc01qv01cnqrr2nxv30zdwbnfk7w"; depends=[annaffy AnnotationDbi Biobase GO_db KEGG_db]; }; - PICS = derive2 { name="PICS"; version="2.26.0"; sha256="10djnd38jdbyk18yqsypkpxqwnfiy8441zpmx1bhzzn8p5q2jpsv"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; - PING = derive2 { name="PING"; version="2.26.0"; sha256="16iygwjsk8n40jp4giik0d4ypd8i4dmd8xdl7dhh81jmjpmycd92"; depends=[BiocGenerics BSgenome chipseq fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; - PLPE = derive2 { name="PLPE"; version="1.42.0"; sha256="1i5a9nzravs4qzlxz4byvrcg0jnhcfd56ir4bm33056l4ymbia9r"; depends=[Biobase LPE MASS]; }; - POST = derive2 { name="POST"; version="1.6.0"; sha256="1grwyy2lisix5iv7brw85vii04yyhqhfkp8srirb0wh6i4q07wwf"; depends=[Biobase CompQuadForm GSEABase Matrix survival]; }; - PPInfer = derive2 { name="PPInfer"; version="1.8.1"; sha256="1ifp7gxvdlvn7wh6aizjfkaj53bcg4hbq2m54ksk2a7n86fympr5"; depends=[biomaRt fgsea ggplot2 igraph kernlab STRINGdb yeastExpData]; }; - PREDA = derive2 { name="PREDA"; version="1.28.0"; sha256="1bm08y242hikgxh8icld6mvnydq2hg4wh6m3km5j3hw3hzv5qmv5"; depends=[annotate Biobase lokern multtest]; }; - PROMISE = derive2 { name="PROMISE"; version="1.34.0"; sha256="0g4qkk7yc7b4idhy78xnwplfwg5ng7y9qwhap90hhw7nnxdvvb3i"; depends=[Biobase GSEABase]; }; - PROPER = derive2 { name="PROPER"; version="1.14.1"; sha256="1wcvpfvj9c1g4yqj02lia3kchf080y81nvl9rb9mls5h6117dmbi"; depends=[edgeR]; }; - PROPS = derive2 { name="PROPS"; version="1.4.0"; sha256="150apwa4c80741kavf2ilz62575pbmjqkwnbgb095ddfqb2wp4ly"; depends=[Biobase bnlearn reshape2 sva]; }; - PROcess = derive2 { name="PROcess"; version="1.58.1"; sha256="0b8simjv3g1dn0dsxa11fzif24z9cmlvczzxzm354m6bkfanl1f0"; depends=[Icens]; }; - PSEA = derive2 { name="PSEA"; version="1.16.0"; sha256="0zw1jrrdl17fmdn3z18rdr86lb9lmpqrsdf9ilm172cxhjbq7iba"; depends=[Biobase MASS]; }; - PSICQUIC = derive2 { name="PSICQUIC"; version="1.20.0"; sha256="0h42hsvh2n0hib9gw4fqpri9lqdnaz6ivzcf406x54zdsgwalyzd"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; - PWMEnrich = derive2 { name="PWMEnrich"; version="4.18.0"; sha256="1v8yqczf5784w7a9d21jp3p2dcirrkg6ydccd8k8i0355x8yxxc9"; depends=[BiocGenerics Biostrings evd gdata seqLogo]; }; - PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.10.0"; sha256="0rkkrriik0l010vzn46zm2zm87k38aihz6l5llp1wawwkyac8cla"; depends=[FindMyFriends igraph jsonlite pcaMethods shiny]; }; - Path2PPI = derive2 { name="Path2PPI"; version="1.12.0"; sha256="1yc4hqycjd2zc87wiq9rrswb5f0x33vsd6d23gckn1sqvam2clqj"; depends=[igraph]; }; - PathNet = derive2 { name="PathNet"; version="1.22.0"; sha256="1n4g960m0j38snignsahaq7nr6bahln0cbqhgx530vwzsdv2xzx3"; depends=[]; }; - PathoStat = derive2 { name="PathoStat"; version="1.8.4"; sha256="15n8lmv9vgwh1ain21gfgyl5bfnkfs7rnjdjbz69bvy1k2nmgl3y"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; - PathwaySplice = derive2 { name="PathwaySplice"; version="1.6.1"; sha256="09glsv0hj8yzg79hjjpnfn59w12i7l0n2fpwzg98wiqx7yyza5pk"; depends=[annotate AnnotationDbi AnnotationHub BiasedUrn Biobase BiocGenerics DOSE dplyr EnrichmentBrowser ensembldb gdata geneLenDataBase GO_db goseq gplots gridExtra htmlwidgets igraph JunctionSeq KEGGREST mgcv org_Hs_eg_db org_Mm_eg_db plotly RColorBrewer reshape2 S4Vectors tibble VennDiagram webshot]; }; - Pbase = derive2 { name="Pbase"; version="0.22.1"; sha256="0z5g2wbjzzqfw0sjb537j84d4l8bvf8pjav5z39ypzx2inq2zzb5"; depends=[AnnotationFilter Biobase BiocGenerics BiocParallel biomaRt Biostrings cleaver ensembldb GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; }; - PepsNMR = derive2 { name="PepsNMR"; version="1.0.2"; sha256="0x7n8faxrczqwn1kkcp22vwag905pswvr2q198kqbh4fjkxgkmrx"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; - PharmacoGx = derive2 { name="PharmacoGx"; version="1.12.0"; sha256="1ddh6bmrddbdmqdpmyy5mlkqvhrk39c19lzybrirfclq6cydfh5g"; depends=[Biobase caTools downloader lsa magicaxis piano RColorBrewer reshape2]; }; - PhenStat = derive2 { name="PhenStat"; version="2.18.1"; sha256="1fq01k4cb4gyzh9knbidcqds2qm1wvlz114s6nldzhl3h0x5h6x5"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; - Pi = derive2 { name="Pi"; version="1.10.0"; sha256="03wzmcz57kdflicjb2wmnxg0fvfmbgizvql5164cf24fsi2lvbgi"; depends=[caret dnet GenomeInfoDb GenomicRanges ggbio ggplot2 ggrepel glmnet Gviz igraph lattice MASS Matrix plot3D randomForest ROCR scales supraHex]; }; - Pigengene = derive2 { name="Pigengene"; version="1.8.1"; sha256="13pmw7nf8fvn9bnnh7fwqgrlg589796nqv83snanqwqsp4fcklid"; depends=[bnlearn C50 GO_db graph impute MASS matrixStats partykit pheatmap preprocessCore Rgraphviz WGCNA]; }; - Polyfit = derive2 { name="Polyfit"; version="1.16.1"; sha256="0nlclhj5ni09blwf5prpcp2iiflqk17ca3gqjl5shvl9y9v8nbqb"; depends=[DESeq]; }; - PowerExplorer = derive2 { name="PowerExplorer"; version="1.2.2"; sha256="14dzv3p79x95w6185r2srnmw1i8n6x2b1fd2chbx42b3xa65xliy"; depends=[Biobase BiocParallel data_table DESeq2 ggplot2 gridExtra MASS ROTS S4Vectors SummarizedExperiment vsn]; }; - Prize = derive2 { name="Prize"; version="1.12.1"; sha256="046wvhjqyyc79q88lzcx1jfg73f4sr83japiapzgm5gqnri1hs8r"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; }; - Prostar = derive2 { name="Prostar"; version="1.14.12"; sha256="0700nkpjmlw7540qms407mm94nsch1jzk8sf30k4qk7fn5rfl1wb"; depends=[BiocManager colourpicker DAPAR DAPARdata data_table DT future highcharter htmlwidgets later promises R_utils rclipboard rhandsontable shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets webshot XML]; }; - ProtGenerics = derive2 { name="ProtGenerics"; version="1.14.0"; sha256="053mmxhzncqgigl2iqjlq56qzimlw2zzw31wpzw19rf7rld1vi3b"; depends=[]; }; - ProteoMM = derive2 { name="ProteoMM"; version="1.0.1"; sha256="0gyx7pfswxa7p6whyi2d10341vgc9yr3vvi7a2wj1padas9cm0m1"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; - ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.12.0"; sha256="049c0g20kbf12hs3r4il3gpr9chi2w2d2l0s7pkgc1sxyb0aydvs"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; - PureCN = derive2 { name="PureCN"; version="1.12.2"; sha256="109riqxc46f7x2psy096rhhpjzpk75j5i00x2842c4drps86bzy3"; depends=[BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; - Pviz = derive2 { name="Pviz"; version="1.16.0"; sha256="1qgavdwqp2zvixbvpm2mjqcbwcz2gw8kfj6zk9064m7zmh4qg3iz"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; - QDNAseq = derive2 { name="QDNAseq"; version="1.18.0"; sha256="04ff9nbckzrlb45mr2j0c3mlh1wcggq5bbl81zklhq203c5x1wc2"; depends=[Biobase BiocParallel CGHbase CGHcall DNAcopy GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; - QSutils = derive2 { name="QSutils"; version="1.0.0"; sha256="1z06c7f2jgr60j9rbarjx310mhy4n91chb3azvw0050z01rgxi02"; depends=[ape BiocGenerics Biostrings psych]; }; - QUALIFIER = derive2 { name="QUALIFIER"; version="1.26.1"; sha256="0656ffwvaiapj4jyksfmqrmwwjs5s9av8lpmy8d31x7iins2kps6"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; }; - QUBIC = derive2 { name="QUBIC"; version="1.10.0"; sha256="08yp8y6rcggrx69326f8gpx3arg9b6hq9fh1f2ngnd409lhlfxdn"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; - QuartPAC = derive2 { name="QuartPAC"; version="1.14.0"; sha256="0bm18r4yfz3z8dr8hhb1a9issggbrw3x3galvmar0wdr1is5mcfk"; depends=[data_table GraphPAC iPAC SpacePAC]; }; - QuasR = derive2 { name="QuasR"; version="1.22.1"; sha256="15lnrj8m8p1ns7iv5f2j0xshma3gpjp3lwry1s0axsxsk9khzrl0"; depends=[Biobase BiocGenerics BiocManager BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; }; - QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.16.0"; sha256="0ww0k2akcpzfxq454g3lcr34270pq6kxxngx23lyanbfqqffhzmr"; depends=[dplyr Rcpp yaml]; }; - R3CPET = derive2 { name="R3CPET"; version="1.14.0"; sha256="0ifvifwilpski32pp1z904s97f5g109b8d4l5yds6alpl9663hls"; depends=[BiocGenerics clues clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; - R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.32.0"; sha256="15a9jfb5c9mnpas3qvq7ca90y8y1yfqbvhgz7k51rzyynzh5nkx8"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; - R4RNA = derive2 { name="R4RNA"; version="1.10.0"; sha256="1n6fhlj0rmk67gdzknx3fysyg46r5lcqrilqq5rhdzrr4gacwx3j"; depends=[Biostrings]; }; - RBGL = derive2 { name="RBGL"; version="1.58.2"; sha256="0vhnh47pswnp27c0zqcbnnsayfmq3cxcgrs9g860555ldqfl4cyl"; depends=[graph]; }; - RBM = derive2 { name="RBM"; version="1.14.0"; sha256="1yr1qjc7flgxxjngd55i9xjjc8r7gdhn8j8hwyhd4p5358z2qaqg"; depends=[limma marray]; }; - RBioinf = derive2 { name="RBioinf"; version="1.42.0"; sha256="1l2vqnrc6ilsi50zn9f1p174hwc63qhbn05z1ng3d2va3x3qb9hm"; depends=[graph]; }; - RCAS = derive2 { name="RCAS"; version="1.8.0"; sha256="0ss5hcg2m7gjji6dd23zxa5bd5a7knwcnada4qs5q2l4clgk39ad"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DBI DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo knitr motifRG org_Hs_eg_db pbapply pheatmap plotly plotrix proxy rmarkdown RSQLite rtracklayer S4Vectors topGO]; }; - RCASPAR = derive2 { name="RCASPAR"; version="1.28.0"; sha256="1d5mr6j7yfv9amdjyyysw79n4yr57ryxybbccc97jbkmqhijp806"; depends=[]; }; - RCy3 = derive2 { name="RCy3"; version="2.2.9"; sha256="04n73hgh2brfrl9rqmiq1afg7hpvq0l6zbl2h1yqzrgmxgzrx0cv"; depends=[BiocGenerics graph httr igraph R_utils RJSONIO XML]; }; - RCyjs = derive2 { name="RCyjs"; version="2.4.0"; sha256="1m5zxa5r9kjcfacgv8ny6pa2a5xd94kajmb054074r7av4ymig5z"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; - RDAVIDWebService = derive2 { name="RDAVIDWebService"; version="1.20.0"; sha256="0agdz7r7qcrxmvcm3d6zs36p239ldhc01qa4c4b4dxvlsq5gh6wk"; depends=[Category ggplot2 GO_db GOstats graph RBGL rJava]; }; - RDRToolbox = derive2 { name="RDRToolbox"; version="1.32.0"; sha256="01dpaniy2chd7kim6q9lqq65pfs3y1z05jrhgjmrmc7hg0yp1zb1"; depends=[MASS rgl]; }; - REBET = derive2 { name="REBET"; version="1.0.0"; sha256="1m2czya7af35xqy9cgrdwwwvfqdq2g8s02jbwv5wl6r6lwhcgid2"; depends=[ASSET]; }; - REDseq = derive2 { name="REDseq"; version="1.28.0"; sha256="1kp7nl3z1w27vmcqkvwbyi6d7dsd125zih8zbzlh96axankcqsck"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; - REMP = derive2 { name="REMP"; version="1.6.1"; sha256="1q3011zbglgy2wrsampwslaf5wiz03ly62qf47mhi5pdngnsb6cn"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 caret doParallel foreach GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b2_hg19 impute IRanges iterators kernlab minfi org_Hs_eg_db ranger S4Vectors settings SummarizedExperiment]; }; - RGMQL = derive2 { name="RGMQL"; version="1.2.0"; sha256="0rvlsl9acjkpva4x1wxg7pyscr3pzdr9mw2k7yzy429ad0lpk81s"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; - RGSEA = derive2 { name="RGSEA"; version="1.16.0"; sha256="02df90fjqynw4r9jx55na6ky1g814463ipb4ag1f4605hhdnbhmq"; depends=[BiocGenerics]; }; - RGalaxy = derive2 { name="RGalaxy"; version="1.26.0"; sha256="1a0bswfqdv2z7kml32c42h7zv5ayam96ka9frndvkba36zlzysrw"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; }; - RGraph2js = derive2 { name="RGraph2js"; version="1.10.0"; sha256="0c53c4rrpqyna8yxcc0cgyx6b2fhd6fkwi2g7a4a8hsspja1qhcv"; depends=[digest graph rjson whisker]; }; - RIPSeeker = derive2 { name="RIPSeeker"; version="1.22.0"; sha256="1x2n1iyik4s67bxq0fl6fpf602k51g4pxjpjpxkgx1a5fsk61f2i"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - RITAN = derive2 { name="RITAN"; version="1.6.0"; sha256="16w7ypvchhl6ljaq2hga790ycg3hznvr7pc5mf0bah8kk524z6a6"; depends=[BgeeDB dynamicTreeCut ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; - RIVER = derive2 { name="RIVER"; version="1.6.0"; sha256="1a7i2zdin9znp9z48wnlj4g9y0bmm6anaphhrihkfqmf0s9lcqwy"; depends=[Biobase ggplot2 glmnet pROC]; }; - RImmPort = derive2 { name="RImmPort"; version="1.10.0"; sha256="1gws1zkh5gzw0drw7c21wp2g8wskaagw0f3g1p41z91sffv8vvrm"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; - RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.6.0"; sha256="1kzsmglxq7lriz5vblprj7g1kbwzgcxjd2l1w12npb6j7vw8s598"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - RLMM = derive2 { name="RLMM"; version="1.44.0"; sha256="17lmjhb0c5w4pp68z4h5ij93n9f31dy7aic40xd958zwxm5gnwyq"; depends=[MASS]; }; - RMassBank = derive2 { name="RMassBank"; version="2.10.1"; sha256="020ilicbbn9rs5pb5mc3dva862jsx1arxbpq45vxig9bbvk2gq73"; depends=[Biobase digest httr MSnbase mzR rcdk Rcpp RCurl rjson S4Vectors XML yaml]; }; - RNASeqPower = derive2 { name="RNASeqPower"; version="1.22.1"; sha256="15x78z3a6j462h4cp93qzrvajnq71p81bn9y6qj4kjv94wdx9v02"; depends=[]; }; - RNASeqR = derive2 { name="RNASeqR"; version="1.0.3"; sha256="07nj0iz25czfvywgl8pp1isd5vnskwnhw9w1mjjkn71sk8q5vxdc"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; }; - RNAdecay = derive2 { name="RNAdecay"; version="1.2.1"; sha256="1hpmr9nip3immkhdzq5qfxf00cdghyhhv8a7bvnan4m7l5c0q509"; depends=[ggplot2 gplots nloptr TMB]; }; - RNAinteract = derive2 { name="RNAinteract"; version="1.30.1"; sha256="14c9h9jqn4h6y28bacvhaib27cr64fljyiw8h7anrlfgqmn9v7hd"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; - RNAither = derive2 { name="RNAither"; version="2.30.1"; sha256="0n2wj8gldiiqpyl7i8i8ys6z4kcv076wyhsc5kirmvrzy031g7ls"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; }; - RNAprobR = derive2 { name="RNAprobR"; version="1.14.0"; sha256="0p2cs5ybkj2yjqkcpmrxggm874y05nnz85milx8hix2vdsx6snc7"; depends=[BiocGenerics Biostrings GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr Rsamtools rtracklayer S4Vectors]; }; - ROC = derive2 { name="ROC"; version="1.58.0"; sha256="1qxmxhx5dqnrvp2076512p64rdanaa7cd95zrs783255ifq5jb0v"; depends=[]; }; - ROTS = derive2 { name="ROTS"; version="1.10.1"; sha256="1d5ggkk47xybcaizfy756qimbf2falg9cld46mhqjp3xfbfvzsg6"; depends=[Biobase Rcpp]; }; - ROntoTools = derive2 { name="ROntoTools"; version="2.10.0"; sha256="0v0g4kpz3sc1aikwn59vjy75g0vdblw1nz0qrcwz48glh11qpzdz"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; - RPA = derive2 { name="RPA"; version="1.38.0"; sha256="04spiv0wp7wm6yx0c4qra148n381k9488j79i91by1qi79zm746z"; depends=[affy BiocGenerics phyloseq]; }; - RProtoBufLib = derive2 { name="RProtoBufLib"; version="1.4.0"; sha256="12r2i9dla3ids1ycfdm670qz61fkf9h5mdzq0q65jaw311dbnspq"; depends=[]; }; - RRHO = derive2 { name="RRHO"; version="1.22.0"; sha256="1p84kgin1vf6vy7la5v0d10l3kv2mnhbjxjykw7yk9faf8xnmsah"; depends=[VennDiagram]; }; - RSVSim = derive2 { name="RSVSim"; version="1.22.0"; sha256="0d99cmazqlsqy58hjs2x9ziyqs7qg084rrp05vnq7ncki7a6bfm1"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; - RSeqAn = derive2 { name="RSeqAn"; version="1.2.0"; sha256="0jphw3yadhgg0c93sywb7fblv2z54nq6lqrb4p7qx9v2rsv5dvqz"; depends=[]; }; - RTCA = derive2 { name="RTCA"; version="1.34.1"; sha256="0hhk3py6d1r4rl8xim2z3j266dx1bnxk1pxc24k61k5ni05nxjpw"; depends=[Biobase gtools RColorBrewer]; }; - RTCGA = derive2 { name="RTCGA"; version="1.12.1"; sha256="15ibhz60z2fgvpji8kdmpvsdprzqnc0wk4gd6kdrkr4m2s0jgw4j"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; - RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.12.1"; sha256="05gmj49hz4mdpsmp1brzha3swybgm1sqf6jyhnj8w2arwc0bh72y"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges IRanges limma RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; - RTN = derive2 { name="RTN"; version="2.6.3"; sha256="1g0xpm31h9yj68cl0pqhlr386hjg0781gp4wcr4hcf52s812wvw5"; depends=[data_table igraph IRanges limma minet mixtools RedeR S4Vectors snow SummarizedExperiment viper]; }; - RTNduals = derive2 { name="RTNduals"; version="1.6.2"; sha256="13f9gw0nrmcznyjcixgk615c1zfyf8w8j30psq66fnsiyjr45p8x"; depends=[RTN]; }; - RTNsurvival = derive2 { name="RTNsurvival"; version="1.6.2"; sha256="0npmn1x5w8g15m14br44zc9vivxlbvgfa74gsa07gbsvlsm466dn"; depends=[RColorBrewer RTN RTNduals scales survival viper]; }; - RTopper = derive2 { name="RTopper"; version="1.28.0"; sha256="0blpza1kq7qh9yb15hrmkfrc7awljafwxkr5kq368yk2gkvjny91"; depends=[Biobase limma multtest]; }; - RUVSeq = derive2 { name="RUVSeq"; version="1.16.1"; sha256="0qk7q3ab7k133divfkp54zsmvsmb9p8r09pkh2caswrzrn8achzv"; depends=[Biobase EDASeq edgeR MASS]; }; - RUVcorr = derive2 { name="RUVcorr"; version="1.14.0"; sha256="05lg37rmf9skqcpnd08v6wnh7sfs449hwwq6nw2hkgy9faip14lz"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; - RUVnormalize = derive2 { name="RUVnormalize"; version="1.16.0"; sha256="1habqdv35v9ypvfmfaxjqpka67bs6hzf4ph9b0gqd67mbfnb49dv"; depends=[Biobase RUVnormalizeData]; }; - RVS = derive2 { name="RVS"; version="1.4.4"; sha256="1zvbin60p81qyk2c0m88dl94ivzyf4cpjdf2hnw8igmvlxszmb8k"; depends=[GENLIB gRain kinship2 snpStats]; }; - RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.6.0"; sha256="1w02nnxpmx05gn6d9kjnahdn9kynbg1szm96c03gh4961zknn3r3"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.2.0"; sha256="022vckcc46bkhfhi2fzgawhf54hi6y2p5ia4v3x3lj221d7hcaax"; depends=[dnet igraph Matrix]; }; - RankProd = derive2 { name="RankProd"; version="3.8.0"; sha256="0jmpwpmj3y13ylk7riyicywpring14dhq4862jgalsjjwa22zzd0"; depends=[gmp Rmpfr]; }; - RareVariantVis = derive2 { name="RareVariantVis"; version="2.10.0"; sha256="0fb59a5568h0wz92blr6m3w01jnzh3kkil2p82fh2b8n2rv40s66"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - Rariant = derive2 { name="Rariant"; version="1.18.0"; sha256="1wzm0qn8ar6k6fgp8hv79qncc0gca9hks3vzzkqq8ac2ml07zl37"; depends=[BiocGenerics dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; }; - RbcBook1 = derive2 { name="RbcBook1"; version="1.50.0"; sha256="1900prjqspn5zripf9h9jd5zkdrcc5477rsrflal6n5jdf9lqz3v"; depends=[Biobase graph rpart]; }; - Rbowtie = derive2 { name="Rbowtie"; version="1.22.0"; sha256="00vpszsjkvid25sjrpzw1dylwmgv27z67njvg8h1axnb09a7gnjw"; depends=[]; }; - Rbowtie2 = derive2 { name="Rbowtie2"; version="1.4.0"; sha256="045cmfwqzcj4zn6r16hkpmr5sd5y0mxvrs5yynf460fdz2p418cr"; depends=[]; }; - Rcade = derive2 { name="Rcade"; version="1.24.0"; sha256="0xx19zxrfjawny75cmp75f1aarngmz8p0vy2ryw0v1qdfm1aby87"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; - Rchemcpp = derive2 { name="Rchemcpp"; version="2.20.1"; sha256="00sb9xaj51vna030c6nkb27r3ymj98a27kl97ksa86di3a8n4162"; depends=[ChemmineR Rcpp]; }; - RchyOptimyx = derive2 { name="RchyOptimyx"; version="2.22.0"; sha256="10kk9h1cknpdgbmn5k7aabrfr60n66i5yjxbj81x7ji6yk1ramcg"; depends=[flowType graph Rgraphviz sfsmisc]; }; - RcisTarget = derive2 { name="RcisTarget"; version="1.2.1"; sha256="0ggwhfm5yl68qapbr3sxz206mpc8vqi9g4x3isxvrcf94q9jb7iq"; depends=[AUCell BiocGenerics data_table feather GSEABase R_utils SummarizedExperiment]; }; - Rcpi = derive2 { name="Rcpi"; version="1.18.2"; sha256="0kd61ajb4lm5b974476204kw9pkavi2l2n7m6zynblpdccpp913f"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; - Rdisop = derive2 { name="Rdisop"; version="1.42.1"; sha256="0pir401z19wx433sxr2r01a5ckd4myygyv0jxj4wfq1fkfpmi1kl"; depends=[Rcpp RcppClassic]; }; - ReQON = derive2 { name="ReQON"; version="1.28.0"; sha256="1llklca4bz2plkmwgvpw7xrn8hxh1vnf6sk91z1yzld49w1b6rxc"; depends=[rJava Rsamtools seqbias]; }; - ReactomePA = derive2 { name="ReactomePA"; version="1.26.0"; sha256="1kglvgn1sjnx9rm45lxp0ji19vzb8qlvjs01agsdbvkn19im5nkm"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; }; - ReadqPCR = derive2 { name="ReadqPCR"; version="1.28.0"; sha256="1c1l7nmnv6bcgnamjja423w5lmfsz8wiv4gv0x22ym1mv3293776"; depends=[Biobase]; }; - RedeR = derive2 { name="RedeR"; version="1.30.0"; sha256="1fq3x0sf146pn0ksddachisrd4782d7qyk1vk96dk7h0knvj9jl9"; depends=[igraph]; }; - RefNet = derive2 { name="RefNet"; version="1.18.0"; sha256="0z7k4f38gphmxqjwvwhp2q0l6ljlpzhl69v1yja0c7gfmhr1lq55"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; }; - RefPlus = derive2 { name="RefPlus"; version="1.52.0"; sha256="1myrgsxh9713hrzzhzln20iabq520xqdmm8narg79wla5rh3vcq7"; depends=[affy affyPLM Biobase preprocessCore]; }; - Repitools = derive2 { name="Repitools"; version="1.28.0"; sha256="1v08fmn4al3rh20zr3afafmxyapdxylbbsf5s8j1wwfz60ysv557"; depends=[aroma_affymetrix BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; - ReportingTools = derive2 { name="ReportingTools"; version="2.22.1"; sha256="1g9pw6gjc6a81758zd1c1ci9q2wy7jcg3kn3iq77cb0kgbqdb5ia"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; - Rgin = derive2 { name="Rgin"; version="1.2.0"; sha256="0jj8asqp7p45rlag34m0x2lasw6mdj4rdi4ywnm5bk2cim50pji6"; depends=[RcppEigen]; }; - Rgraphviz = derive2 { name="Rgraphviz"; version="2.26.0"; sha256="0bp6517xsih0wng2rgkh9z4r1afqhwl3h04z6ssm7p4cdj0ahm4y"; depends=[graph]; }; - Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.4.3"; sha256="0hjhjvg2kss71fkmxlbgnyyy1agwzgq57rxkgkm4riw82x2rvw7q"; depends=[]; }; - Rhtslib = derive2 { name="Rhtslib"; version="1.14.1"; sha256="13fv78sk5g0gqfl3ks3rps3zc1k66a4lzxvgn36r7ix43yxk7hnr"; depends=[zlibbioc]; }; - RiboProfiling = derive2 { name="RiboProfiling"; version="1.12.0"; sha256="1njvkd1khmf3rbp3dkz5z63wp79z4wmk4kzd3p3amky3w5by070z"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; - Ringo = derive2 { name="Ringo"; version="1.46.0"; sha256="1zg8sq4hqq3yldghfs1m2jn15qmdk6i1pr7c3aq73a6k99qyzihd"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; - Risa = derive2 { name="Risa"; version="1.24.0"; sha256="1ln68rxv7wx96b3p2fh70jva07j9hj1cfflxyw34i32qkp2840hm"; depends=[affy Biobase biocViews Rcpp xcms]; }; - Rmagpie = derive2 { name="Rmagpie"; version="1.38.0"; sha256="0di8vf3cj7y2srydjq74r7gmksqhjh3r8wmffq1k96knd68nx0sx"; depends=[Biobase e1071 kernlab pamr]; }; - RmiR = derive2 { name="RmiR"; version="1.38.0"; sha256="0gv6cm5mh54xh2n25mpy6ak849rcppnajq04y7nw9hjv1i66g125"; depends=[DBI RmiR_Hs_miRNA RSVGTipsDevice]; }; - Rmmquant = derive2 { name="Rmmquant"; version="1.0.4"; sha256="085yn4qg5sn7cbl7gj3b56n7mxiagdj4k8zqqd131dsd5kzwlylc"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - RnBeads = derive2 { name="RnBeads"; version="2.0.1"; sha256="0lfvl0k138dhniffb4c8wdicsihajr6rnrfmmmcgxk2wh6ciibi5"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; - RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="1.14.1"; sha256="1gxsp3nr5ww3xlqyac704lczsa5xxyz748lpfpkghj4mi3h0lwa8"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; - Rnits = derive2 { name="Rnits"; version="1.16.0"; sha256="1l96jvyq0afkv2k3gasf0420wbhrs1nv1f5xx0h9f4mhcx81hr7q"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; - Roleswitch = derive2 { name="Roleswitch"; version="1.20.0"; sha256="15cb4gbwgkjvidfdlvc2qf62jf3nvddqni9bbymcyi2pnpd1n6lr"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; }; - RpsiXML = derive2 { name="RpsiXML"; version="2.24.0"; sha256="1l9p5mi7b78cwh4pvwqwxx15rr4hms11m5r0vp0d2krfp7ih9m8h"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; - Rqc = derive2 { name="Rqc"; version="1.16.2"; sha256="1cxa6c9k9ahcji2c979hr0xz9hv7m8w4l6aiczfdhcnjraa4k2qq"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase digest GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; - Rsamtools = derive2 { name="Rsamtools"; version="1.34.1"; sha256="02paq7klabdkaf1b8pmmbpmyqsj3yncnfsz62rgka6r4dpsilwk9"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; }; - Rsubread = derive2 { name="Rsubread"; version="1.32.4"; sha256="1d0gc3pa7zjz2sa4689xxzppikv7xd6k1d8f1x7h973cyiq5iaj3"; depends=[]; }; - Rtreemix = derive2 { name="Rtreemix"; version="1.44.0"; sha256="013x6rdxsxynr8s0x8a1nk7xcanvgkm2lid9bip3v240bg9wwha4"; depends=[Biobase graph Hmisc]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.20.1"; sha256="18whrw67nxn82xshckl2pjy7d14sa3c27h3n9naqyqwz88lr6dzg"; depends=[BiocGenerics]; }; - SAGx = derive2 { name="SAGx"; version="1.56.0"; sha256="0p81jfm7fr907npbl1qrl4yswbz2a2pgmng5ww68xwmkayxkns79"; depends=[Biobase multtest]; }; - SANTA = derive2 { name="SANTA"; version="2.20.0"; sha256="1x4sq1vxvgrngq5aahbc2sgn1vw8l3d4b24fm0lldvn2b8jprzx7"; depends=[igraph Matrix snow]; }; - SBMLR = derive2 { name="SBMLR"; version="1.78.0"; sha256="02xcsaq2zlsvxj1zs2v4syw0k7fsiq826nny8kazvirkzpqmi446"; depends=[deSolve XML]; }; - SC3 = derive2 { name="SC3"; version="1.10.1"; sha256="04hqbw8k3f2nki5c9brkjlqm072cyw1ppgwlr7id3xqmg4w38l6w"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; - SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.24.1"; sha256="00sfnc9pdw8j7gbrc6z4v9ji8kwndabr8zxw8agkbf2zz8pmq4jx"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; - SCBN = derive2 { name="SCBN"; version="1.0.0"; sha256="0cfmpwpp9drz13rrrwg030db1jprxfw2nkxlwlwscaj1vb4q69fv"; depends=[]; }; - SCnorm = derive2 { name="SCnorm"; version="1.4.7"; sha256="1jlfxwqy1gm1v0a40dd3p5zicr0wa4m7k4nqnf5ypbkngf31zfv9"; depends=[BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SDAMS = derive2 { name="SDAMS"; version="1.2.1"; sha256="0cr1mazrbq4hc2gql7bj4pvqd1vdzvpmg6r3dhvybb4prpdl25ys"; depends=[qvalue SummarizedExperiment trust]; }; - SELEX = derive2 { name="SELEX"; version="1.14.0"; sha256="1hcsngnxv4q0ig80nr91x1qlxi2swcx9xlvayng25izzjc6yj1k8"; depends=[Biostrings rJava]; }; - SEPA = derive2 { name="SEPA"; version="1.12.0"; sha256="04dl578fm1zdd30q9d5dxhcm1xvkn19ijda07yxdsxifik4297fp"; depends=[ggplot2 org_Hs_eg_db org_Mm_eg_db reshape2 segmented shiny topGO]; }; - SEPIRA = derive2 { name="SEPIRA"; version="1.2.0"; sha256="1lvbx621kspl3ry8hbqgf2chins420vn26x81x5q1skvhk9s6h03"; depends=[corpcor limma]; }; - SGSeq = derive2 { name="SGSeq"; version="1.16.2"; sha256="1s4pipdzppnixqx4x6xcy5pz1ps9mhjjxy1zj5h5dy2wi13mnsfs"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; - SIAMCAT = derive2 { name="SIAMCAT"; version="1.2.1"; sha256="1gpcir6lcfg5q3m2zisvbnva8vx8mq1pml8na9nmkg92rdv42hwk"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo LiblineaR matrixStats mlr ParamHelpers phyloseq pROC PRROC RColorBrewer scales stringr]; }; - SICtools = derive2 { name="SICtools"; version="1.12.0"; sha256="06ypc7xqn8rpdyp16rlwsaw37gb94z9c980fwadbjvf2bzga5xwd"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; - SIM = derive2 { name="SIM"; version="1.52.0"; sha256="16rkh4nnpm1bzq9z85s64fl09ymrwifmdcanwg4q8vnasqdcyp01"; depends=[globaltest quantreg quantsmooth]; }; - SIMAT = derive2 { name="SIMAT"; version="1.14.1"; sha256="096cmj3xbcddyphy5z5ikwm459fqkibdxzqd24815z6yxld8bmf6"; depends=[ggplot2 mzR Rcpp reshape2]; }; - SIMD = derive2 { name="SIMD"; version="1.0.0"; sha256="15ivvgjhsabg9lvdfylqv4640jvmk65kj1lb3z8h7fwc24qhr6aj"; depends=[edgeR methylMnM statmod]; }; - SIMLR = derive2 { name="SIMLR"; version="1.8.1"; sha256="1j6v950dgbxbmwmn0yhb69six4cs1hlzr24dz7rxpdf84r63zsls"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; - SISPA = derive2 { name="SISPA"; version="1.12.0"; sha256="1vqgm6wiymvy83zj71anqknvya0h03pwcavc0gn6dfmxc2rhhk85"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; - SLGI = derive2 { name="SLGI"; version="1.42.0"; sha256="09665cxx7rl5aai10pcj5wwq90psygwpj5776vp8fjmv1bq8lgx8"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; }; - SLqPCR = derive2 { name="SLqPCR"; version="1.48.0"; sha256="1izzqzn42pzfxx28qj5nviwqd63jicw9gifk1m9w2r3j7asqwpqy"; depends=[]; }; - SMAP = derive2 { name="SMAP"; version="1.46.0"; sha256="0aqlqq0q5f5n9q8xfharzy55gx7p0gzijndbljj656jpy5dq6l9v"; depends=[]; }; - SMITE = derive2 { name="SMITE"; version="1.10.1"; sha256="1hmsv8i1np9m4dgskwjjzmprdixvx9yakx6y2p2icsjsppvqd69l"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGG_db org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; - SNAGEE = derive2 { name="SNAGEE"; version="1.22.0"; sha256="1r9bvjc9l3xs1i9hrfzajhv6yb25qgnjgh1wyxrg0lky0n00z93m"; depends=[SNAGEEdata]; }; - SNPRelate = derive2 { name="SNPRelate"; version="1.16.0"; sha256="0p6lrjj0v63f2y31727my72c4pnqmyb22d6rpi3yk556d21nlbyr"; depends=[gdsfmt]; }; - SNPchip = derive2 { name="SNPchip"; version="2.28.0"; sha256="0vlrgraczyv4si4mrgssh6ijvq02qnb5h186rzqz0ssscjndh111"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses S4Vectors SummarizedExperiment]; }; - SNPediaR = derive2 { name="SNPediaR"; version="1.8.0"; sha256="124nw9ncf2mlkrw11v0azl69hhvj7cc8zyd78i16n8biw8pcphb7"; depends=[jsonlite RCurl]; }; - SNPhood = derive2 { name="SNPhood"; version="1.12.0"; sha256="1f6rhlkisdx8psl7d2anxm03l205aas2iwr2par2q4bl3v10aqky"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - SPEM = derive2 { name="SPEM"; version="1.22.0"; sha256="1qy92c8hjlxiji8bwzfmwf2nndnafqfmxpkxxwz3xsa9nvbsy22j"; depends=[Biobase Rsolnp]; }; - SPIA = derive2 { name="SPIA"; version="2.34.0"; sha256="1x9rkhza6wky0wfy5bb4bjlmwlhpap9l7mc2svk15nv6r7dwr0v8"; depends=[KEGGgraph]; }; - SPLINTER = derive2 { name="SPLINTER"; version="1.8.1"; sha256="0s9cr79xarry5g2s1qp0dp0lp6y49asnbc4dcdrm9j7gqmd78s3l"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; - SPONGE = derive2 { name="SPONGE"; version="1.4.0"; sha256="15f7n452nn0avkylvrh49c2s9k2bnfzn4i6d58k8dp71vld0n07i"; depends=[Biobase data_table doRNG expm foreach glmnet gRbase igraph iterators logging MASS ppcor]; }; - SQUADD = derive2 { name="SQUADD"; version="1.32.0"; sha256="02z9mcbwaprjpwbbbyxi50hkhi13zm4sa9qy43bkha98i2r2flkn"; depends=[RColorBrewer]; }; - SRAdb = derive2 { name="SRAdb"; version="1.44.0"; sha256="1d2fbgzz9vrv1z8wj5pgi8f31dbd6zh8kn76qw972b3s3zd9apni"; depends=[GEOquery graph RCurl RSQLite]; }; - SRGnet = derive2 { name="SRGnet"; version="1.8.0"; sha256="0xcnkdnh7ihjay60fig6vq3xs5953m9ar3pysrka8yi1pfk9j4xx"; depends=[DMwR EBcoexpress gbm Hmisc igraph limma MASS matrixStats pvclust]; }; - SSPA = derive2 { name="SSPA"; version="2.22.1"; sha256="0540i0yfpxzyx2cvsfmd6ymsc4shalpvx134fs9rhaw9l9y17c9n"; depends=[lattice limma qvalue]; }; - STAN = derive2 { name="STAN"; version="2.10.1"; sha256="0fm0y4nks74rqn5fwq8mrg687mnikjhf2rg7fk815l2d52zpsqgk"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; - STATegRa = derive2 { name="STATegRa"; version="1.18.0"; sha256="0928yjgaqgx0axiwfrff1dhqcqbjh5hqdsf8607da4ncf58qcglk"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; - STRINGdb = derive2 { name="STRINGdb"; version="1.22.0"; sha256="0xfcxq1h4c756rfz1pkcq8zigf0lacrskxzid28lzawd047l224h"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; - STROMA4 = derive2 { name="STROMA4"; version="1.6.1"; sha256="1iw5q8mz8fgjx9prgdp5y11gnrz37rjllbb2xmlvvk92xc06s3f3"; depends=[Biobase BiocParallel cluster matrixStats]; }; - SVAPLSseq = derive2 { name="SVAPLSseq"; version="1.8.1"; sha256="0sd2bhx19pynwm2k4811k0l846cc9vdhf9g7h73kjipmh8fq42lg"; depends=[edgeR ggplot2 limma lmtest pls SummarizedExperiment]; }; - SVM2CRM = derive2 { name="SVM2CRM"; version="1.14.0"; sha256="0m8x176kaf7k4zfb7cyxan4if42v4g3w3yr24a35d3a0yhn9lkgb"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash SVM2CRMdata verification zoo]; }; - SWATH2stats = derive2 { name="SWATH2stats"; version="1.12.1"; sha256="1j92121a48lz5bvxa9p3k1h7j1qi0za7z1vqmi683afn15j7cbmb"; depends=[biomaRt data_table ggplot2 reshape2]; }; - SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.36.1"; sha256="19mmpn10m1vr9c13c9s26jmfhi2ha3w8nkldw2r6ci61vwldicrx"; depends=[]; }; - ScISI = derive2 { name="ScISI"; version="1.54.0"; sha256="1xs5vwgvcq72jiir5sl99z9pa4kh28jaidj1h31cvfsz0yjkfsl9"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; }; - Scale4C = derive2 { name="Scale4C"; version="1.4.0"; sha256="12d8l6j57gwnrigzyprfw03rzgsni7n75ws2hi1ldybx7bx3nlag"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; - Sconify = derive2 { name="Sconify"; version="1.2.1"; sha256="141iq9k1psyc25vf1i8hh52i3dckas1l928yjr59p25qng0z4hfy"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; - SemDist = derive2 { name="SemDist"; version="1.16.0"; sha256="086lparkzxssz78dn67x4f7c3pw45y7gj2ldvhmkfqyynfm57giq"; depends=[annotate AnnotationDbi GO_db]; }; - SeqArray = derive2 { name="SeqArray"; version="1.22.6"; sha256="1aj6k5vr1rcjavm8q65cw93wwb3kjb1hg74r7nwc5rl94sg0gsan"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SeqGSEA = derive2 { name="SeqGSEA"; version="1.22.1"; sha256="1c4lfs9bfdmbq732c13fvph5gwp6ac0fxa489al9lghwxnbkjpqf"; depends=[Biobase biomaRt DESeq doParallel]; }; - SeqSQC = derive2 { name="SeqSQC"; version="1.4.0"; sha256="1dg4dm45s7l5dgq2cr6g9a5a65jlpf801z3a1x42h36ybgs7gg3j"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; - SeqVarTools = derive2 { name="SeqVarTools"; version="1.20.2"; sha256="03z40cmymq6agbmp061kvk4xm4cgilb3gyls5ymwyn4p56m0ks2a"; depends=[Biobase dplyr gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix rlang S4Vectors SeqArray tidyr]; }; - ShortRead = derive2 { name="ShortRead"; version="1.40.0"; sha256="0iks123i1adkb9i2q4wvfqdmmj9dy867jvngj9757y8gj6xbcpy1"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; }; - SigCheck = derive2 { name="SigCheck"; version="2.14.0"; sha256="0k00lrzpjfdcp3yvjbd1bc3710pa0dd884k4yyq43nv0cv9f4szp"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; - SigFuge = derive2 { name="SigFuge"; version="1.20.0"; sha256="0z78yg43wklzrpqawpprgb6nm1wngkd97g09aa9nzv91p05k85dp"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; - SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.20.0"; sha256="0n5awvsjz215g6h0kz6mzhzxw3vnhbf16b1n3bkqb7kv4cdrd4vq"; depends=[Biobase limma mclust Ringo]; }; - SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.4.1"; sha256="12139kk9cqgzpm6f3cwdsq31gj5lxamz2q939dy9fa0fa54gdaq4"; depends=[BiocGenerics S4Vectors SummarizedExperiment]; }; - SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.18.0"; sha256="013dslbyq55a41d3n842brjk2bq1kxw0r18mb6drgbxx2sflzc02"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; - SpacePAC = derive2 { name="SpacePAC"; version="1.20.0"; sha256="1qm71d11ggwhkfk1rlq8zx2mjz7942ixcda1pgrd9m537zhjy469"; depends=[iPAC]; }; - SparseSignatures = derive2 { name="SparseSignatures"; version="1.2.0"; sha256="0wvlsdr75na5zi92hgj2bnxcxm8z9p8f99nfg6x3jzi39binwfr8"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls]; }; - SpeCond = derive2 { name="SpeCond"; version="1.36.0"; sha256="0xx3wdfadw3jgmvvhsd2irdgqdd8pwlprcy07i3j2vja9ji0cx5f"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; - SpidermiR = derive2 { name="SpidermiR"; version="1.12.1"; sha256="1xz6rygpdc6f78dcg56fqblair1dswn2r6afycny94m3kllhc4hb"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; }; - SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.22.2"; sha256="19isf8wxy7lpaqr4zy5319sx9r2bm6mh8djgcbabg6ns198iy0kq"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; - StarBioTrek = derive2 { name="StarBioTrek"; version="1.8.5"; sha256="1z79ylbjsy78ziji641h9jyqdv042csqmvr9wwhwz410xvqmh8ri"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; - Starr = derive2 { name="Starr"; version="1.38.0"; sha256="1rrs366d8yr02077v34l6yr8w361s94zira2gcf935kkmfrclgij"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; }; - Streamer = derive2 { name="Streamer"; version="1.28.1"; sha256="0spqdjmfz1iaa6rcmbzn9d8z60cs1k0smvnnsdjlg7frdh039ra8"; depends=[BiocGenerics graph RBGL]; }; - SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.0.1"; sha256="18gmzwxjwg8j63z213x8r0j6jpmgx4yca29495c2hp4r9gv6hbzr"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; - SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.12.0"; sha256="07805572xhpj5mfwq6kw1ha21wgalqvhh4ydvafyl1bnf3r20vps"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix S4Vectors]; }; - Sushi = derive2 { name="Sushi"; version="1.20.0"; sha256="0dv5di0hgbvk9cxnqhyf18mdjl50k6bk00a89r6zgp83rbxwr1r8"; depends=[biomaRt zoo]; }; - SwathXtend = derive2 { name="SwathXtend"; version="2.4.0"; sha256="0986srxbi3f7pfnhghh9dznwrl9k5qrcmcf1vqa3lg06bwz7pbsc"; depends=[e1071 lattice openxlsx VennDiagram]; }; - SwimR = derive2 { name="SwimR"; version="1.20.0"; sha256="0sgci3rs4kak79yibcvxw3mjb30y9q8hacqykrpav2sjyqc6fcy1"; depends=[gplots heatmap_plus R2HTML signal]; }; - TCC = derive2 { name="TCC"; version="1.22.1"; sha256="0yfjlr5pgdnkrcv97cqhkm5xdn7dlspbf3fd60ai8zm2iw62x031"; depends=[baySeq DESeq DESeq2 edgeR ROC]; }; - TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.10.5"; sha256="1p73950jyvnbilpr4rzwmxw2bdi3h7lb2qiaqvm4rahmxmymy9nj"; depends=[biomaRt circlize ComplexHeatmap ConsensusClusterPlus data_table doParallel downloader dplyr EDASeq edgeR genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel ggthemes gridExtra httr IRanges jsonlite knitr limma matlab plyr R_utils RColorBrewer readr rvest S4Vectors scales selectr sesame stringr SummarizedExperiment survival survminer sva tibble tidyr XML xml2]; }; - TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.8.1"; sha256="1bj4pvchg0fj6gifbkg79fi314ssl8zp4rylp2ib0jfliqjx5199"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame sesameData shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; - TCGAutils = derive2 { name="TCGAutils"; version="1.2.2"; sha256="00wi93lxq06aczjj9g5drs4jy6c4md550hbqxf6p11f07mh7kqcy"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; - TCseq = derive2 { name="TCseq"; version="1.6.1"; sha256="01lakq59skdivgyb613x4rwxfap9iiccwi2ixd0nl7vw97wsjfc3"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; - TDARACNE = derive2 { name="TDARACNE"; version="1.32.0"; sha256="0b7p7pl9sn2g3f7wv405nwng2xknxqhdwqm2bkr4czxcrmwdal5f"; depends=[Biobase GenKern Rgraphviz]; }; - TEQC = derive2 { name="TEQC"; version="4.4.0"; sha256="16aj8nadcpnv1lqqz7pfss7vc2s5h0k79ahxb4l4405j8yrf16hl"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; - TFARM = derive2 { name="TFARM"; version="1.4.0"; sha256="1bi7j7x8libijsf7c144fbf456f5vhaj8b3avdil49qa4k78623w"; depends=[arules fields GenomicRanges stringr]; }; - TFBSTools = derive2 { name="TFBSTools"; version="1.20.0"; sha256="18iqr2xsmgkmm5x4dz1vm9ig13x9vb1kvqxc0gpc4pzanf3w6jrp"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; - TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.2.3"; sha256="04qhwx6kmgyiasm2kynacwmd0i17b1bxr3ivg7jw3nr2dmg21h4g"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - TFHAZ = derive2 { name="TFHAZ"; version="1.4.0"; sha256="18mfmcbb5vfr2c96gai3hdzvbb3jzfnmmrclcdp9shrpwg6l1ipd"; depends=[GenomicRanges IRanges S4Vectors]; }; - TFutils = derive2 { name="TFutils"; version="1.2.0"; sha256="1gppabscwfbqyvwrnl7mppw9wp528plp3bxq7g73hhgackfwnwkc"; depends=[dplyr magrittr miniUI shiny]; }; - TIN = derive2 { name="TIN"; version="1.14.0"; sha256="0n5lx8pg066z9adjsfnslxw6fv0w0ibv7nk2yz8qaiq6zivvcc1y"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; - TMixClust = derive2 { name="TMixClust"; version="1.4.0"; sha256="03i9fgq29xr3h72c2scb4fa6305l7bpwj6hgk0j1v7ark6xz5xqz"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; - TPP = derive2 { name="TPP"; version="3.10.1"; sha256="00rfxhzamz45phav239xki8jy9bj7f0r03wrl9d09ir5amis271p"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tidyr VennDiagram VGAM]; }; - TRONCO = derive2 { name="TRONCO"; version="2.14.2"; sha256="1cqkk6zsfsjpq8iidvmpfvkfak3ryp2bl9p04in0sn8sl9is6nsq"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; - TSCAN = derive2 { name="TSCAN"; version="1.20.0"; sha256="1yas32djld4dlsmzi65dflmnrff48m7vb6j7wgr44jip416mh7l1"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; }; - TSRchitect = derive2 { name="TSRchitect"; version="1.8.9"; sha256="0i5i7m2rfqgnr2n39hfdgbvlhm8aqa6c77i7jvp66lapskww4rgb"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - TSSi = derive2 { name="TSSi"; version="1.28.0"; sha256="1i0qcp5nygfny8pq6x70miig8gcf0an91rckci602m8il2x66rmp"; depends=[Biobase BiocGenerics Hmisc IRanges minqa plyr S4Vectors]; }; - TTMap = derive2 { name="TTMap"; version="1.4.0"; sha256="0cwajx9kfgs4dz10j88fbg5jlzj3yr6im23972swab58kl2n30vz"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; - TVTB = derive2 { name="TVTB"; version="1.8.0"; sha256="058h38x6x69jsp8qsdy7mz9wjjvhw4dwbph14qgqvagbaiaj7v19"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; - TarSeqQC = derive2 { name="TarSeqQC"; version="1.12.0"; sha256="1p1fwmkikh6a6sff3hmdxc3z4ypxz2iv1j544gfmsq47pibn8cgp"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; - TargetScore = derive2 { name="TargetScore"; version="1.20.0"; sha256="0kxiv5rghq3fw416gg3z7gfram146hjaf5pjd5hbyvy7rydilvbz"; depends=[Matrix pracma]; }; - TargetSearch = derive2 { name="TargetSearch"; version="1.38.2"; sha256="1vad4kxsanmjk78wjqq6lq3mjif01b89f09mhg0rwp902bdqlk35"; depends=[ncdf4]; }; - TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.0.4"; sha256="03ny8w0z29jblph8nsysrqm7l2m2qpij52415vv1an4wpv821pgd"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; }; - TissueEnrich = derive2 { name="TissueEnrich"; version="1.2.1"; sha256="13nbcrj441wrbjn8xbrb8fn802bimhnaxjb980bn55l0ix7npy1c"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; - TitanCNA = derive2 { name="TitanCNA"; version="1.20.1"; sha256="0vp5i30n3f8kschal06i3v4szl1vl3lvry522csxdax3pram90g8"; depends=[data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges Rsamtools VariantAnnotation]; }; - TnT = derive2 { name="TnT"; version="1.4.0"; sha256="0cza7l550ly35w0c1xjvixgxwdl53v90q0rnb6i7jj6yxgq4ppwq"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; - ToPASeq = derive2 { name="ToPASeq"; version="1.16.1"; sha256="0j54fvcs7ynd6n81x07r2xra3l1fr1yfv8gf46r77gzmcn1y39vs"; depends=[graph graphite Rcpp]; }; - TransView = derive2 { name="TransView"; version="1.26.1"; sha256="1y2cdyg0hixm3zxasib18ql9917vnf43cjn9wpkx52fqfwa62ly3"; depends=[BiocGenerics GenomicRanges gplots IRanges Rsamtools S4Vectors zlibbioc]; }; - Trendy = derive2 { name="Trendy"; version="1.4.6"; sha256="0xk3xyx9094ymwfxabgqd0pykwhi8izjpck6dfm16chjlq3hik69"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; - TurboNorm = derive2 { name="TurboNorm"; version="1.30.0"; sha256="0a3f1zgj914rklrdilcnqfcr4g3mhg1bzfzxr6nn2cqin47hlakp"; depends=[affy convert lattice limma marray]; }; - TxRegInfra = derive2 { name="TxRegInfra"; version="1.2.1"; sha256="1qvc0lb3x3s1hv1qw1yih79kdd7pa5wa9wdd94yd8z4vfasmfvav"; depends=[BiocParallel GenomeInfoDb GenomicRanges IRanges mongolite RaggedExperiment rjson S4Vectors SummarizedExperiment]; }; - TypeInfo = derive2 { name="TypeInfo"; version="1.48.0"; sha256="0h2jnshr2sgyay3isiapfagjjh4wnff7nw711j4gxw9wg328w24l"; depends=[]; }; - UNDO = derive2 { name="UNDO"; version="1.24.0"; sha256="0yins1aw7gfp5qxmsai4l59nl5i6diq1h2frvdshsg6dbfxkzy67"; depends=[Biobase BiocGenerics boot MASS nnls]; }; - Ularcirc = derive2 { name="Ularcirc"; version="1.0.0"; sha256="1h4pv78x78wlgq0zmdjgdapjp7bxzdkw078pq9h6xzhkwvmyilz3"; depends=[AnnotationHub Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicFeatures gsubfn httpuv mirbase_db moments shiny shinyFiles Sushi yaml]; }; - UniProt_ws = derive2 { name="UniProt.ws"; version="2.22.0"; sha256="02rb0ygc3pikb8qbi8134n9hjzza4n3bvqbqfl5dqb2n1ibkknmq"; depends=[AnnotationDbi BiocFileCache BiocGenerics rappdirs RCurl RSQLite]; }; - Uniquorn = derive2 { name="Uniquorn"; version="2.2.1"; sha256="0wh57344icpd84l4gj7lz2n75mhpw6ywsir7zj4ky83p30x066sr"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; - VanillaICE = derive2 { name="VanillaICE"; version="1.44.0"; sha256="0v4bqcwbbzabmq1pcs55j3jlhqssr2jsr9hxh76p1n7d6fw4dgs6"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; - VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.28.13"; sha256="1a7b0bg579ynpbfh5dk87fdgl62r9cwk4zmrl61m6zil7881p3gh"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; - VariantFiltering = derive2 { name="VariantFiltering"; version="1.18.0"; sha256="13z1x1v9xbdzsfn9x66b6sd18pla98cwd5zvxkwaiph8rp8bgvic"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; - VariantTools = derive2 { name="VariantTools"; version="1.24.0"; sha256="1ml3pl7xnxvzr6zkypr80xzw6nffswk29gzxycn42473sc4ixn7j"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - Vega = derive2 { name="Vega"; version="1.30.0"; sha256="035f2ly3y5i4cirwvfham5kpyawg9scfvfvyn7ys4lyjxx59y4dd"; depends=[]; }; - VegaMC = derive2 { name="VegaMC"; version="3.20.0"; sha256="0cgvfmwxrprrzgp0fxhi944y1z83h4mjv89iax2bshpwp1q5d9xr"; depends=[Biobase biomaRt genoset]; }; - Wrench = derive2 { name="Wrench"; version="1.0.0"; sha256="12gfdj2p52pah67bimz14xcwmcb4c2snjwswj0fns7v3v1h9rlqg"; depends=[limma locfit matrixStats]; }; - XBSeq = derive2 { name="XBSeq"; version="1.14.1"; sha256="0na0jiqfy40bzl243gqc2214k4hibv6v4ndiqwq0c5f78cyr6lph"; depends=[Biobase DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma roar]; }; - XDE = derive2 { name="XDE"; version="2.28.0"; sha256="034474qsc065z85wjlr8g695cpknh9kwbhzqdkh8fab2j06249sr"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools MergeMaid mvtnorm RColorBrewer siggenes]; }; - XINA = derive2 { name="XINA"; version="1.0.1"; sha256="0gwgcvipr014w96ds13kf3gap3fkvyq0vamdfds3nacd9h1hgmbp"; depends=[alluvial Biobase ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; - XVector = derive2 { name="XVector"; version="0.22.0"; sha256="01fph1ydd6g0rl5mcw54spx22glq2kqv7wyw8bqw0plmabzcwwdm"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; - YAPSA = derive2 { name="YAPSA"; version="1.8.0"; sha256="1agacimdd1m5yja2xbcsb83mns4svpxbjcsfrvm9ydqdj737i10j"; depends=[circlize ComplexHeatmap corrplot dendextend GenomeInfoDb GenomicRanges GetoptLong ggplot2 gridExtra gtrellis KEGGREST lsei PMCMR reshape2 SomaticSignatures VariantAnnotation]; }; - a4 = derive2 { name="a4"; version="1.30.0"; sha256="1iqjy35rqx3m2y0dm2bk4cnzdm1qvbi608bfmrid88w6wmwz3qlk"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; - a4Base = derive2 { name="a4Base"; version="1.30.0"; sha256="0k9k3bv99msbwf2y416cz316ssaha2dxvmaddbl7z9037p8mjr70"; depends=[a4Core a4Preproc annaffy AnnotationDbi Biobase genefilter glmnet gplots limma mpm multtest]; }; - a4Classif = derive2 { name="a4Classif"; version="1.30.0"; sha256="02l77a59865ly3bydv74ff2l2wfb0x5s283g1nx6g1qrw3ly982j"; depends=[a4Core a4Preproc glmnet MLInterfaces pamr ROCR varSelRF]; }; - a4Core = derive2 { name="a4Core"; version="1.30.0"; sha256="1d62afxkfp9zbp59ijcn4wd1gdynygw013av41wq8bfm3cx6f9zr"; depends=[Biobase glmnet]; }; - a4Preproc = derive2 { name="a4Preproc"; version="1.30.0"; sha256="1dd3fqcc7nr2zbi46k0mnqkh42mfxk894ixfpqg7i9np2523p5gp"; depends=[AnnotationDbi]; }; - a4Reporting = derive2 { name="a4Reporting"; version="1.30.0"; sha256="124774z3bfdjgxx2ad40795h92aam21yfx0rw0n01nk2wf6k7xc4"; depends=[annaffy xtable]; }; - aCGH = derive2 { name="aCGH"; version="1.60.0"; sha256="0bmcw2pf4g584vjzagi70bxfasgzbi7nbis638aa5aymqgssclh8"; depends=[Biobase cluster multtest survival]; }; - abseqR = derive2 { name="abseqR"; version="1.0.0"; sha256="0w0ngxnilcrxlixsz7ls3zm99gyabxwn7w1r3r45n96d4aj075ry"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; - acde = derive2 { name="acde"; version="1.12.0"; sha256="1qlas1fkjwx3x7ylhx4xwgwd3xyyijgsaqprfz3zk32cym67igx2"; depends=[boot]; }; - adSplit = derive2 { name="adSplit"; version="1.52.0"; sha256="0q5h0gizdxmpaz946ynzh1kbx51yd98z23y21bh7a3m2cqhr63gi"; depends=[AnnotationDbi Biobase cluster GO_db KEGG_db multtest]; }; - adaptest = derive2 { name="adaptest"; version="1.2.0"; sha256="1ibrzga0jk5rs6a097gn5ar7hkz8zja54l35xznp72jaradprj2i"; depends=[calibrate origami SummarizedExperiment tmle]; }; - affxparser = derive2 { name="affxparser"; version="1.54.0"; sha256="0cfsab3jih4zbrzfpd2cgi4wry2xmp8hmchpp70z33x0shwcxddx"; depends=[]; }; - affy = derive2 { name="affy"; version="1.60.0"; sha256="0x8h4fk2igv7vykqfvf6v9whmx3344v5rf3gyfajd431xkjldz6k"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; - affyContam = derive2 { name="affyContam"; version="1.40.0"; sha256="1qday3swgrgziymmwl2iyz2f8kd610hgpj9i9dsv8x09nks0jxcm"; depends=[affy affydata Biobase]; }; - affyILM = derive2 { name="affyILM"; version="1.34.0"; sha256="1v5spxwfg5vbca6rh2d3zsnsz1rlji02wfxq45pljwqcjr7pk6zy"; depends=[affxparser affy Biobase gcrma]; }; - affyPLM = derive2 { name="affyPLM"; version="1.58.0"; sha256="0n827mshllqj867w137x8qly992rvls9wcygmr09gmpy8f5hr0d2"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; - affyPara = derive2 { name="affyPara"; version="1.42.0"; sha256="0jk2r1v3yq1p9ny9hj46w42aq34m00bfm62a2n38cvql4zjrp6wz"; depends=[affy affyio aplpack snow vsn]; }; - affyQCReport = derive2 { name="affyQCReport"; version="1.60.0"; sha256="0l9znngszbjdwyyc1kpjszy3mrmwx781ww3wq8hs19jwvczgscyc"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; }; - affycomp = derive2 { name="affycomp"; version="1.58.0"; sha256="1hkaa0g6kzmsnhd5vq8qy856rj7l5hcknhl62j47pqvwigfb1adg"; depends=[Biobase]; }; - affycoretools = derive2 { name="affycoretools"; version="1.54.0"; sha256="022pmik9gxpc0j3fcb2gmi8vchjwg3pwp1yn0cg5qfhy4w8mbyzz"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; - affyio = derive2 { name="affyio"; version="1.52.0"; sha256="1s4zp1211vf0krxzch9v3q3r6vs8hihqppq18i2fpvwlknfja7c1"; depends=[zlibbioc]; }; - affylmGUI = derive2 { name="affylmGUI"; version="1.56.0"; sha256="1hpr812jys2d265r6007bh2p1d6hay25dg7ia39xwcycmwjfn9xq"; depends=[affy affyio affyPLM BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; - affypdnn = derive2 { name="affypdnn"; version="1.56.0"; sha256="0v8913xw30xf42pvql9m4wk5sqnrvydhn1a13amk7prfr2hhjnjr"; depends=[affy]; }; - agilp = derive2 { name="agilp"; version="3.14.0"; sha256="0jqgd582b9p3dclfs0ps4agj64vxmvqp9a2a9bw12dywschhngq3"; depends=[]; }; - alpine = derive2 { name="alpine"; version="1.8.0"; sha256="1ijh1lxl6w7raw2lvzxf20jx8x20d8p9mci62q3fpkc35i8312m6"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; - alsace = derive2 { name="alsace"; version="1.18.0"; sha256="1946iwghbsy0dcdpx7wl284prg5xikr0s7aj8pvv7gcmah8i9i7n"; depends=[ALS ptw]; }; - altcdfenvs = derive2 { name="altcdfenvs"; version="2.44.0"; sha256="1fkly7m4fgah6v7a6fglxqzik2562q6hg6ffq89kbgnzgvab4xsi"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; - ampliQueso = derive2 { name="ampliQueso"; version="1.20.0"; sha256="1dwphzsl45g537ic1m2bbg80dcilvhg1w8c02zlsxlihhid5rwy7"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; }; - amplican = derive2 { name="amplican"; version="1.4.1"; sha256="0wshidpdg3pqzmwshq5ics38gfmrwfqm803y83ynd7b0k9fch07h"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggforce ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats rmarkdown S4Vectors ShortRead stringr waffle]; }; - anamiR = derive2 { name="anamiR"; version="1.10.0"; sha256="0yk56vkibnbfwlnixh5r4a9iw9pnmavl7lv4p0jdmv2wnx85gzgz"; depends=[agricolae DBI DESeq2 gage gplots limma lumi RMySQL S4Vectors SummarizedExperiment]; }; - annaffy = derive2 { name="annaffy"; version="1.54.0"; sha256="16c6allp4vlx0g3nffanrm0mkkf8s2n31dccw4bflnx2pr81bmd5"; depends=[AnnotationDbi Biobase DBI GO_db KEGG_db]; }; - annmap = derive2 { name="annmap"; version="1.24.0"; sha256="12047l7sc3ayvicqnlxc424kbvbiiz1nn4rczd1n50b8kzc25fjs"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; - annotate = derive2 { name="annotate"; version="1.60.1"; sha256="0pk6ayr3vyqxk850ljkbyil4i382ngfqcbxlv0qrp62yfqgzcjwp"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl XML xtable]; }; - annotationTools = derive2 { name="annotationTools"; version="1.56.0"; sha256="0hqy0mq6pkn05p2dv4pw24p697yvikhdn351adf2ynldy6f3sl9z"; depends=[Biobase]; }; - annotatr = derive2 { name="annotatr"; version="1.8.0"; sha256="1rknhlndn9fxa68dbkqjphiv50xqp28vf1259k5w7vlm75vvdkdv"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; - anota = derive2 { name="anota"; version="1.30.0"; sha256="182fp6dpws516y0igvwn6936higfqvy25haa0xs273f8aczr9cf0"; depends=[multtest qvalue]; }; - anota2seq = derive2 { name="anota2seq"; version="1.4.2"; sha256="1x2l9c50j8pi8xk85pp4chvfb865zwj4ppaj02bi2lsjgqyda6wm"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; - antiProfiles = derive2 { name="antiProfiles"; version="1.22.0"; sha256="1div92hqrri8c0y5g37cc4ysi30gcklf82n6g0p98xwv54ks2y7j"; depends=[locfit matrixStats]; }; - apComplex = derive2 { name="apComplex"; version="2.48.1"; sha256="01vzk1blgwn0zqdgzhr19haa0ixd78gphxrhjab27n9g8s60i3jg"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; - apeglm = derive2 { name="apeglm"; version="1.4.2"; sha256="13yhm14cxw2gmckh7sjr1yy8q2x1wggmnbj2qp6zd7raq4l48qrb"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; - appreci8R = derive2 { name="appreci8R"; version="1.0.0"; sha256="1ajk6q40dr5il19ffnsfglbh1rfn8ylwv08mw9wfpvc26x4znwak"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ESP6500SI_V2_SSA137_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_0_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; - aroma_light = derive2 { name="aroma.light"; version="3.12.0"; sha256="0vfifgpqxjjncbiv6gvlk9jmj14j90r9f30bqk3ks9v1csjnjhrb"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; - arrayMvout = derive2 { name="arrayMvout"; version="1.40.0"; sha256="1m3n2pqm40wsq7x7acspcq268608pnx58mndqfcbv813685b70p5"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; }; - arrayQuality = derive2 { name="arrayQuality"; version="1.60.0"; sha256="0fbvlilz111ahlm50gmwwjydpasbplr0lpj3dz9apawi0jff4f4a"; depends=[gridBase hexbin limma marray RColorBrewer]; }; - arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.38.0"; sha256="0xhzz9ixc5mp49cwpi4smdgdc3mrf1ppzhx8dpjahq1f7r3xnbb5"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; }; - artMS = derive2 { name="artMS"; version="1.0.12"; sha256="0px37blc5qhqwd7azgji67x74sh3y34aqr57g41sbaj1x0rh84bs"; depends=[AnnotationDbi biomaRt bit64 circlize cluster ComplexHeatmap corrplot data_table dplyr factoextra FactoMineR getopt ggdendro ggplot2 ggrepel gplots gProfileR limma MSstats openxlsx org_Hs_eg_db org_Mm_eg_db PerformanceAnalytics pheatmap plotly plyr RColorBrewer reshape2 seqinr stringr tidyr UpSetR VennDiagram yaml]; }; - attract = derive2 { name="attract"; version="1.34.1"; sha256="1370w8qvmiv8r48hk29mlh53xs5a78qpz6pbax7fq7q9xip7fbs0"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; - bacon = derive2 { name="bacon"; version="1.10.1"; sha256="1pd3p1cfggiy08458vplsy3s1zm5jqqcwrv4fks8ra2kf97j38df"; depends=[BiocParallel ellipse ggplot2]; }; - ballgown = derive2 { name="ballgown"; version="2.14.1"; sha256="073jyv98s05cxx8n83c20chh0k1sbw8rndldcdfq3habahllf8si"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; - bamsignals = derive2 { name="bamsignals"; version="1.14.0"; sha256="19irfx1y1izf903vq59wxsdbf88g143zy9l89gxqawh7jfxds8w8"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; - banocc = derive2 { name="banocc"; version="1.6.1"; sha256="18n273xwc49mr3d7b83nxqivyr5zzgcbv6kajq8ha641f34nasw1"; depends=[coda mvtnorm rstan stringr]; }; - basecallQC = derive2 { name="basecallQC"; version="1.6.0"; sha256="0l2w55lc8aknj3ivma3arp96j46hcfzw20k9js3dgx8k3sgalxmn"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; - bayNorm = derive2 { name="bayNorm"; version="1.0.9"; sha256="1jm06y6mv85hpjmn9qqikm3i2x6afzhkcby75r7k9dqg6an5zgra"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; - baySeq = derive2 { name="baySeq"; version="2.16.0"; sha256="0f6yckihm5cwh3dycv2g54hf7nddhcqya4yrqwbir96y5k1d1km5"; depends=[abind edgeR GenomicRanges]; }; - bcSeq = derive2 { name="bcSeq"; version="1.4.1"; sha256="0izmzb341h85ixxdriiavwjjpw96r2pd2y9kwx9zi2rrbxa6wakf"; depends=[Biostrings Matrix Rcpp]; }; - beachmat = derive2 { name="beachmat"; version="1.4.0"; sha256="07zgmms0qg8gw7x0js46965bbhpfj2aa1h5ixdz9r332bxv9cdmr"; depends=[BiocGenerics DelayedArray HDF5Array Rcpp rhdf5 Rhdf5lib]; }; - beadarray = derive2 { name="beadarray"; version="2.32.0"; sha256="0xy75h98xkclsi2hxzz8qj21sm8fp3cy7ikmjsryvdbk7jwl6lgg"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; }; - beadarraySNP = derive2 { name="beadarraySNP"; version="1.48.0"; sha256="1s1k5q1mczbnx5gdxa8r1igkmc8jw5dmnp0gl00q862bbsljplk9"; depends=[Biobase quantsmooth]; }; - bgafun = derive2 { name="bgafun"; version="1.44.0"; sha256="1sp3w0g0sxs6g42mjj76sjpi5ybcvhg6a4sp617713a71dab7276"; depends=[ade4 made4 seqinr]; }; - bgx = derive2 { name="bgx"; version="1.48.1"; sha256="0ygqbqpbrp4hy5dp4g7nn7zrfar855a7bp16dxcv7646vp3yrzk4"; depends=[affy Biobase gcrma Rcpp]; }; - bigmelon = derive2 { name="bigmelon"; version="1.8.0"; sha256="1wc5n5cq05a7qv0b46ywbgg1fbz0s8hyf83g861dxw8jhhmnm717"; depends=[Biobase BiocGenerics gdsfmt GEOquery methylumi minfi wateRmelon]; }; - bigmemoryExtras = derive2 { name="bigmemoryExtras"; version="1.30.0"; sha256="0pzqchv9namv73nm2vr6wjny7ghja8bs73s7xp4ixyfg4d1i9h06"; depends=[bigmemory]; }; - bioCancer = derive2 { name="bioCancer"; version="1.10.11"; sha256="0v55y3scj9qmiqjvqm4caj3ccchfv1dzmbc5jxgdb39vw1hjqsc2"; depends=[AlgDesign AnnotationFuncs Biobase cgdsr clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier htmlwidgets org_Hs_eg_db plyr r_import radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; - bioDist = derive2 { name="bioDist"; version="1.54.0"; sha256="1pl6z8yx1pns19y924x79ky4vqx180hifvy7n4mdhv6mjvhjkijl"; depends=[Biobase KernSmooth]; }; - bioassayR = derive2 { name="bioassayR"; version="1.20.1"; sha256="1zf1ykmn3wq6jxb6k1v00qna5wjlh4yy7x35x2k6zqgn7df4607z"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; - biobroom = derive2 { name="biobroom"; version="1.14.0"; sha256="1xfqa666n8h65y277a1g56r1z76x9fn0dnj45cqgx3ddaz0v1nil"; depends=[Biobase broom dplyr tidyr]; }; - biocGraph = derive2 { name="biocGraph"; version="1.44.0"; sha256="0nq8wvssikkcrs3vffpy3pj79iydm44ffsx67q38kg51gc4ykipk"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; - biocViews = derive2 { name="biocViews"; version="1.50.10"; sha256="06ms82pyc5rxbd9crfvqjxcwpafv0c627i83v80d12925mrc51h8"; depends=[Biobase graph RBGL RCurl RUnit XML]; }; - biomaRt = derive2 { name="biomaRt"; version="2.38.0"; sha256="1lshkknp7dmr3p6dd2zbv86cc71h53ggh9ji83jcjym8sgbbspl2"; depends=[AnnotationDbi httr progress RCurl stringr XML]; }; - biomformat = derive2 { name="biomformat"; version="1.10.1"; sha256="1a4fhqmvabdpldybhjli5dpnd68qraccvd1f2zf7z2d1s17c9pgq"; depends=[jsonlite Matrix plyr rhdf5]; }; - biomvRCNS = derive2 { name="biomvRCNS"; version="1.22.0"; sha256="0bzi8b4g1ki8gslkb2nkrl4fyrl5lj9qipq8lmr6zj924y3pkmnm"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; - biosigner = derive2 { name="biosigner"; version="1.10.0"; sha256="04mny1lrgmwd1yy07qhim286xvm34802f12rbpsplb0xzwg09y6i"; depends=[Biobase e1071 randomForest ropls]; }; - biosvd = derive2 { name="biosvd"; version="2.18.0"; sha256="1ngmnk4xakpf451lbx9libxwlsqz7xffaj53awkw5iakzmj7szb9"; depends=[Biobase BiocGenerics NMF]; }; - biotmle = derive2 { name="biotmle"; version="1.6.0"; sha256="0vmff5xpcprx1x45fbbm9bx3wygg6r2zb7z9mnkjjshsinf7wwwb"; depends=[BiocGenerics BiocParallel doFuture dplyr future ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tmle]; }; - biovizBase = derive2 { name="biovizBase"; version="1.30.1"; sha256="0v5gvcx180qn5487i1dph9abadw3ggqwp5yzy41jswzbdc8q6sbm"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - birta = derive2 { name="birta"; version="1.26.0"; sha256="10k6r3g92ksm90gj8z04vs1psgrr1p0yddrjl5zcwrccczcankpb"; depends=[Biobase limma MASS]; }; - birte = derive2 { name="birte"; version="1.18.0"; sha256="036grna913y55qz72npwq6k27wcvaf7swy3y9nrfh0wg327w4y9a"; depends=[Biobase glmnet limma MASS nem Rcpp RcppArmadillo]; }; - blima = derive2 { name="blima"; version="1.16.0"; sha256="1719skygq6mizvr67klja0z1xqbmfhxgjyi90i9p95sbb6mr1n74"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; - bnbc = derive2 { name="bnbc"; version="1.4.0"; sha256="001m8nal3l1ya5w1f9gh7sgvdli9lv0v8ylkdgmdwjy2wrpkqiij"; depends=[BiocGenerics EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp S4Vectors SummarizedExperiment sva]; }; - brainImageR = derive2 { name="brainImageR"; version="1.0.0"; sha256="1j5axlx12dpl6y58djqbf6dg146zz94ki43nhi9rjl03aw9bg9fc"; depends=[BiocGenerics ExperimentHub ggplot2 gridExtra randomForest RColorBrewer testthat]; }; - branchpointer = derive2 { name="branchpointer"; version="1.8.0"; sha256="1fgfaf7i9f1rr34p38b87wq5qys7r8wqi99xw4yk154bhsahkdlm"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; - breakpointR = derive2 { name="breakpointR"; version="1.0.0"; sha256="19hpwdpj5mqidy0m5q0ilx3p84ry0ym31g2ld3cnihzi2kxcyqzm"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; - bridge = derive2 { name="bridge"; version="1.46.0"; sha256="0fsf8qcl4p63fgzyk9zsr25krz1a34mi79mnxya0n4fxrf3qcq2f"; depends=[rama]; }; - bsseq = derive2 { name="bsseq"; version="1.18.0"; sha256="0r0l4fwaq09n14bvqy01id569zimxwafs3xnp0zn2089512igis7"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scales SummarizedExperiment]; }; - bumphunter = derive2 { name="bumphunter"; version="1.24.5"; sha256="1f9vk3srffbx8jpza40nd18a4y0p0z8q40mx55dlcnddkwrqi19b"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; - cTRAP = derive2 { name="cTRAP"; version="1.0.3"; sha256="14rfnqmp2mgnkyhgyvlplv4alnwm909pw586n7nc53r82ph4m0f0"; depends=[cowplot data_table fgsea ggplot2 httr limma pbapply piano plyr R_utils readr rhdf5]; }; - caOmicsV = derive2 { name="caOmicsV"; version="1.12.1"; sha256="1nqa1f5dbx11lfripaz2l7pkymcgi5vbiglhhk0kz4n0p5p1pjz3"; depends=[bc3net igraph]; }; - canceR = derive2 { name="canceR"; version="1.16.02"; sha256="1fzhd2mppzs3jkysyqg6brg62d6afxl2cm6dhnyz1sjp2951bvsv"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; - cancerclass = derive2 { name="cancerclass"; version="1.26.0"; sha256="1fsfxi95iyb2bhy64xdja4231bfs9byzzvdpsf6abd8myqaflcpx"; depends=[binom Biobase]; }; - casper = derive2 { name="casper"; version="2.16.1"; sha256="1wr7l1lri00g3fxafhjkj82y3nlh488x9ayjf4x3bcyv20d0lc2a"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; - categoryCompare = derive2 { name="categoryCompare"; version="1.26.0"; sha256="1kb4b833wn5qf3d6vic0jf0p0h6dhgcpjnxnqd6b4bhva0y3jcfd"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; - cbaf = derive2 { name="cbaf"; version="1.4.1"; sha256="04qspghxibf05fjx8sbqq8kxhx0y0lh8v5mv4lzzy13bhms9nfsk"; depends=[BiocFileCache cgdsr genefilter gplots RColorBrewer xlsx]; }; - ccfindR = derive2 { name="ccfindR"; version="1.2.1"; sha256="0gcbqjlb4jpxw2rswwgld5nazzzsphh8kdaqpjhn96qslkfxqlrw"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; - ccmap = derive2 { name="ccmap"; version="1.8.0"; sha256="1vkkm455nhhg123jwl2kv3gdf3mvw5zab4whym0vh33rm499hrks"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; - ccrepe = derive2 { name="ccrepe"; version="1.18.1"; sha256="10c6mypr2q3j420bvldl59h1y58i8l06piwqr1ji80z6r6xk96vx"; depends=[infotheo]; }; - celaref = derive2 { name="celaref"; version="1.0.1"; sha256="0sb1mg2ql09jf7hc5kszh3h9cajma0pdwzf8f58pridwhafw5z0p"; depends=[BiocGenerics dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; - cellGrowth = derive2 { name="cellGrowth"; version="1.26.1"; sha256="0zmn45i6shr2d6q2dg2p2raz38cy6k8363maq4r4648fx2bmvkb2"; depends=[lattice locfit]; }; - cellHTS2 = derive2 { name="cellHTS2"; version="2.46.1"; sha256="1fj1gshgphbbqhywwzvm3xrw8zfp19dc8fi6kbzv20ikf3am9fml"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; }; - cellTree = derive2 { name="cellTree"; version="1.12.1"; sha256="1qr68f39bqykvjbjp5bw71g41wfp369yc88dqz9wppkzi16vl6z0"; depends=[gplots igraph slam topGO topicmodels xtable]; }; - cellbaseR = derive2 { name="cellbaseR"; version="1.6.1"; sha256="0052wvb6jijs1v8yv1z049n6cy4qcjbrv20gqbsgl14xj0mif26x"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; - cellity = derive2 { name="cellity"; version="1.10.1"; sha256="1ifm50ff9q6lwxyi52qzksimnwvd8yddrp7jkidzlykamh5dg05p"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; - cellscape = derive2 { name="cellscape"; version="1.6.0"; sha256="062x43n5jq8hwlrlgd1ffgbpnifac79j9dzd35f6phb6vc1g63dl"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; - cghMCR = derive2 { name="cghMCR"; version="1.40.0"; sha256="0h2adfwa6afjik7zi6kn8i7gqbn7x2r7rh8kvi8v8c8y08166d3a"; depends=[BiocGenerics CNTools DNAcopy limma]; }; - charm = derive2 { name="charm"; version="2.28.0"; sha256="1shf9f9b0dl5fskify0lqnqnr9rk4hk5rnrx7b028m83zphizxs8"; depends=[Biobase Biostrings BSgenome ff fields genefilter gtools IRanges limma nor1mix oligo oligoClasses preprocessCore RColorBrewer siggenes SQN sva]; }; - chimera = derive2 { name="chimera"; version="1.24.0"; sha256="1zkwf6zbg1151br9kafbqs4k4d5h70lbzjgy4x3q5pj3iqwg6j8p"; depends=[AnnotationDbi Biobase BSgenome_Hsapiens_UCSC_hg19 GenomicAlignments GenomicRanges Homo_sapiens Rsamtools TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - chimeraviz = derive2 { name="chimeraviz"; version="1.8.5"; sha256="0hh1a68g0m8i9iqhmy6r9m7j1diaraj3qryk7lzjr2l97d6q4d8j"; depends=[AnnotationDbi AnnotationFilter ArgumentCheck BiocStyle Biostrings data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; - chipenrich = derive2 { name="chipenrich"; version="2.6.1"; sha256="0nm55lfac405spccl9f19p5ij8mdaj6lm7qmaf4xqagsaf5x0pa9"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; - chipseq = derive2 { name="chipseq"; version="1.32.0"; sha256="1pp1rm5fs3hlar5x4dl3a3b4gara7qwf81dbvka6r1n78hrf9x1b"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; - chopsticks = derive2 { name="chopsticks"; version="1.48.0"; sha256="0r52z0hjaxinw11jzg8cyhdpg2g1027vd5aiijwi6bmipdzw4sfk"; depends=[survival]; }; - chroGPS = derive2 { name="chroGPS"; version="2.0.1"; sha256="1bn5s1r927ifhwqifws0wgs7v15fk8922kbm8qdkg5zaqibj5qx7"; depends=[Biobase changepoint cluster ellipse GenomicRanges ICSNP IRanges MASS vegan]; }; - chromDraw = derive2 { name="chromDraw"; version="2.12.0"; sha256="0qqam9vklg2cwsvcp9fm3l3c4lmjzf2lnxrv5dci16f8q55z88cl"; depends=[GenomicRanges Rcpp]; }; - chromPlot = derive2 { name="chromPlot"; version="1.10.0"; sha256="15f7wmak0rp0bfzqsjmz6i8zk5g4axsgk7034qg4jw9hlp0nkd6v"; depends=[biomaRt GenomicRanges]; }; - chromVAR = derive2 { name="chromVAR"; version="1.4.1"; sha256="16q9pmjlaqc7nvaxg9arfsrrnpcyzvz0gb5zq7l3g2jgjp4pfi30"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; - chromstaR = derive2 { name="chromstaR"; version="1.8.1"; sha256="0ad8q80r7c2bh4a4qy0n82n0ln6fpwwmabcicpdqlvaiahdnp9ph"; depends=[bamsignals chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; - chromswitch = derive2 { name="chromswitch"; version="1.4.1"; sha256="12c9p8val2hfz41kcgph0ms2vfb8dvh754c5z70kyy4wg9n4d28s"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; - cicero = derive2 { name="cicero"; version="1.0.15"; sha256="0awxl47rk6f15x8qb70azjs80fsfd8c78bvr4hgc3dmiyik5frs2"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringr tibble VGAM]; }; - cisPath = derive2 { name="cisPath"; version="1.22.0"; sha256="07ym4ma35vngdbv8fdqf755kiafgrn02bizn77pfkzvrf7xsz5c7"; depends=[]; }; - cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.20.1"; sha256="0fy0bbj2d40532z7a019whf3g7092pj7ypg5p7byimcc2h9ybbh7"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomicRanges seqinr]; }; - cleaver = derive2 { name="cleaver"; version="1.20.0"; sha256="0b00a5n87hcssnra9j0qfsq260a83g9p35rnhpg8ywv3kk6z85cc"; depends=[Biostrings IRanges S4Vectors]; }; - clippda = derive2 { name="clippda"; version="1.32.0"; sha256="18jcpcwzf89a29i7qlja4nx9dn8n2r14kpjfl9sy2riaf0v9cmqq"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; - clipper = derive2 { name="clipper"; version="1.22.0"; sha256="1gihz3dzii0bf048zbna4yj0fcs8pnhyacpmvyapi70iin03nwng"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; - clonotypeR = derive2 { name="clonotypeR"; version="1.20.0"; sha256="03k94s5j47mh7hw8m12q7lsyszmf5kpmlc7xsvwbnnazsk15h55v"; depends=[]; }; - clst = derive2 { name="clst"; version="1.30.0"; sha256="1jakdp6ca14n8zc3njwkqibsir6as2nipjsxkanss5rn7s6xvql9"; depends=[lattice ROC]; }; - clstutils = derive2 { name="clstutils"; version="1.30.0"; sha256="0igvcd1dk8njp8fmf8clnx1hjzsbpf6xr7n31qzynzqghdr52660"; depends=[ape clst lattice rjson RSQLite]; }; - clustComp = derive2 { name="clustComp"; version="1.10.0"; sha256="17d86fzadlmv45bxwdnjaw5bcr46zn73y4wqw5xw5rvaawrdc73v"; depends=[sm]; }; - clusterExperiment = derive2 { name="clusterExperiment"; version="2.2.0"; sha256="0r8x21z0clgjbxxdr3iqfmg0nw2pwdidyc41pnbzw9y40lzad4lv"; depends=[ape BiocGenerics cluster DelayedArray dendextend edgeR HDF5Array howmany kernlab limma locfdr matrixStats NMF phylobase RColorBrewer Rcpp RSpectra S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; - clusterProfiler = derive2 { name="clusterProfiler"; version="3.10.1"; sha256="1v4fh8ll7zk8yhbaa0nq9xvqrb05kyvbpwkqpnjf07s873805rxm"; depends=[AnnotationDbi DOSE enrichplot ggplot2 GO_db GOSemSim magrittr plyr qvalue rvcheck tidyr]; }; - clusterSeq = derive2 { name="clusterSeq"; version="1.6.0"; sha256="0zq0pah3qk4j5grsj3dyc62n222gacjlhr2xw7frwrrbjlxza7b2"; depends=[baySeq BiocGenerics BiocParallel]; }; - clusterStab = derive2 { name="clusterStab"; version="1.54.0"; sha256="0irwzgayssdnz76k13zf27h9s74x8idi26zfsdd2c3av494d3yl9"; depends=[Biobase]; }; - cn_farms = derive2 { name="cn.farms"; version="1.30.0"; sha256="1lmlixab15xq12dxw04yyxd1p65irwhxkgkxsgvw28f922bkmlsg"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; - cn_mops = derive2 { name="cn.mops"; version="1.28.0"; sha256="14rrvyfyzva1hpdgsn1df6m4q14mc3zdn1lng6klzrni3ifsidjm"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - cnvGSA = derive2 { name="cnvGSA"; version="1.26.0"; sha256="02p4ba2vy75qfp3nlfvm0dmmihi1k1fbcl6ckxlr5hgimm1q034i"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; - coGPS = derive2 { name="coGPS"; version="1.26.0"; sha256="0jsbgx6xdasqii9wcfn4ilf2dfc790lzzby1bhpzlq94nwlr896h"; depends=[]; }; - coMET = derive2 { name="coMET"; version="1.14.0"; sha256="09r81ag9ix4jh3zvwyzym9g7rc7vkyhagcv934r8i4fzzvpiqsz4"; depends=[biomaRt colortools corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; - coRdon = derive2 { name="coRdon"; version="1.0.3"; sha256="1v4zvzff4r54wjgp48l5vazvfy8w0gvvqxxhajm35p6d2bbpfsvd"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; - cobindR = derive2 { name="cobindR"; version="1.20.0"; sha256="1bkwjj825srwm3rn3j88p1q35x03f129ca1hk919nnf92psh47nc"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust seqinr yaml]; }; - codelink = derive2 { name="codelink"; version="1.50.0"; sha256="1nfnb9iz8j31ia9979mjvs9gzdbh9zwfy14qxvjrp3dv8d1gf2rx"; depends=[annotate Biobase BiocGenerics limma]; }; - coexnet = derive2 { name="coexnet"; version="1.4.0"; sha256="0751781vsr46xs3dpq2n29li1zipzad9qv6xnfdm34v62yaggy94"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; }; - cogena = derive2 { name="cogena"; version="1.16.0"; sha256="12r86h6fzr6wqvf70jjxf02zm72ks577m6qcv60wiss609c0b0dn"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; }; - compEpiTools = derive2 { name="compEpiTools"; version="1.16.0"; sha256="02ygqf2h9bm8vfqjfw0xzd75brcazf1dmhq95l8xqc3gy77cffr6"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; - compartmap = derive2 { name="compartmap"; version="1.0.3"; sha256="0p7ww7wgfnnankkjlq9jgqqcw9l9k0k2ynzmgxdqsyndpi9ghmgr"; depends=[GenomicRanges gtools Homo_sapiens minfi mixOmics SummarizedExperiment]; }; - compcodeR = derive2 { name="compcodeR"; version="1.18.1"; sha256="0833zar5zpgns3rlr6nsfagd1ypp62c2779kzajvsrjm61406mrs"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; - condcomp = derive2 { name="condcomp"; version="1.0.1"; sha256="1drp9zicf29alh8cq093ns7asl67zhb12mbi0cjd3n1z4i19919j"; depends=[cluster ggplot2 ggrepel outliers]; }; - consensus = derive2 { name="consensus"; version="1.0.3"; sha256="0lylnis33dbnd6vxp3g4pvn1cvzslpy6j2y1j31bw5an1i5lg4l2"; depends=[gplots matrixStats RColorBrewer]; }; - consensusDE = derive2 { name="consensusDE"; version="1.0.6"; sha256="1wakskzc6bcq0a8inacsd062z5sgaqkk8317pa2jdn8kyfqxgq9z"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings dendextend DESeq2 EDASeq edgeR GenomicAlignments GenomicFeatures limma pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; - consensusOV = derive2 { name="consensusOV"; version="1.4.1"; sha256="0bqqbk2mcj1q5bpyv5gykxpjf3c1gszm5irbdhp1hnkvpy5rxdyw"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; - consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.10.0"; sha256="1rww42z71x6d7ckjdm6xa4cvvqazbwghq6na3srq5aarp6pyh34w"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; - contiBAIT = derive2 { name="contiBAIT"; version="1.10.1"; sha256="0wf8s1v8kz69s351xy4c9ji6k1k9xg568lg0b525s4q9wdh87xrl"; depends=[BH BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; - conumee = derive2 { name="conumee"; version="1.16.0"; sha256="095kzjzvwz5l452arkvrmag7mvqsip14xzbnsfk7wzlr5vpk2765"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; - convert = derive2 { name="convert"; version="1.58.0"; sha256="1z7f4dxlsgknapvwq7dvkhyaq25ns2i53fp085j5yy89aqv12w12"; depends=[Biobase limma marray]; }; - copa = derive2 { name="copa"; version="1.50.0"; sha256="0cl9i2pi0ap9nvhqldsll9vg7k5qlzr0691mp4i7r6qib31xnzpx"; depends=[Biobase]; }; - copynumber = derive2 { name="copynumber"; version="1.22.0"; sha256="0ipwj9i5p1bwhg5d80jdjagm02krpj2v0j47qdgw41h8wncdyal3"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; - coseq = derive2 { name="coseq"; version="1.6.1"; sha256="03qphm9bq7x4h4n970hd0bpi9sqvjdmg5cmlkzfqwpnbd4njlp0m"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; - cosmiq = derive2 { name="cosmiq"; version="1.16.1"; sha256="1lk0778j7famza72h8ppmx4pxnkmm6m6vddz0rw7fbnh3af8j9p2"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; - countsimQC = derive2 { name="countsimQC"; version="1.0.1"; sha256="115b806867fnznxdgr786vp7gd536xyz4x94v2s2wpaxwyf65jgs"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 randtests rmarkdown SummarizedExperiment tidyr]; }; - covEB = derive2 { name="covEB"; version="1.8.1"; sha256="197i9lmmq9xj4f9xxf1050blz5ap6nqbkhfpn19594fc88g09dxa"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; - covRNA = derive2 { name="covRNA"; version="1.8.0"; sha256="152yhnq13303wkb4p1bqal7qrg2gxwfqsdpgn84m2sz8gm43dxkc"; depends=[ade4 Biobase genefilter]; }; - cpvSNP = derive2 { name="cpvSNP"; version="1.14.0"; sha256="0g4b4i001z5s5g570cpay61c8b8274cy35gp09mb3hjmg5r6rcxp"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; - cqn = derive2 { name="cqn"; version="1.28.1"; sha256="062887yp5kalz8zv648a19gh1j5v26hbrv6005416r6z83rwj91q"; depends=[mclust nor1mix preprocessCore quantreg]; }; - crisprseekplus = derive2 { name="crisprseekplus"; version="1.8.0"; sha256="125fnm1mrx38bb2c6inw5c45ckh8ryapjvxx7227jj86a3hcljk7"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; - crlmm = derive2 { name="crlmm"; version="1.40.0"; sha256="1j37ff0pp782isnrzfaw0cac8nxcz09yc4z7xgss78ah3af26nwj"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; }; - crossmeta = derive2 { name="crossmeta"; version="1.8.0"; sha256="01d8vx016bw4qm3c6pwws1g3s2v7xppsj2v9gzdzwazpk4sfyikk"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager ccmap data_table doParallel doRNG DT fdrtool foreach GEOquery ggplot2 limma matrixStats metaMA metap miniUI oligo pander plotly RColorBrewer rdrop2 reshape shiny stringr sva]; }; - csaw = derive2 { name="csaw"; version="1.16.1"; sha256="0rbmsikhj60np22j84gxinr354b2i892nqic493jhzziiznl51sl"; depends=[AnnotationDbi BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicFeatures GenomicRanges IRanges limma Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; - ctc = derive2 { name="ctc"; version="1.56.0"; sha256="0yp7c0abk48jx1wf8n1gawh7dm15idahqc8va24v8cm0bzxgnmh2"; depends=[amap]; }; - ctsGE = derive2 { name="ctsGE"; version="1.8.1"; sha256="0zwaky1azh7692qz2w64r5f13w1anww2a8wld10238nlnbmyzjrb"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; - cummeRbund = derive2 { name="cummeRbund"; version="2.24.0"; sha256="1fl8p63zr1jxif95anhqg56cssi44k5y05g7qxpkf2w3siyv1b91"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; - customProDB = derive2 { name="customProDB"; version="1.22.1"; sha256="0wqjkgrjd3m6dx150039q1srfgp2749bfn8awdbmprl9pp4mkxx8"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; - cycle = derive2 { name="cycle"; version="1.36.0"; sha256="0kx40mi7dh6k1s3vc32537q8585q8v4applzyw1y2pklap7sxzyl"; depends=[Biobase Mfuzz]; }; - cydar = derive2 { name="cydar"; version="1.6.1"; sha256="1j3d817xlhhxn4p32cms8br1kbpl34zdx502p70m4jd4sb6kr8p1"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; - cytolib = derive2 { name="cytolib"; version="1.4.1"; sha256="0fl4p0ddbv0ifd4pyyda9ydfk47dg1rs3qd11wwqfc54ydqzcaha"; depends=[BH RProtoBufLib]; }; - dSimer = derive2 { name="dSimer"; version="1.8.0"; sha256="0pcggyimicsyx9wkgjxny8byyhb31phcr8xygi6sfkm17r2nxkwy"; depends=[AnnotationDbi ggplot2 GO_db igraph org_Hs_eg_db Rcpp reshape2]; }; - daMA = derive2 { name="daMA"; version="1.54.0"; sha256="0mgd90hdq0045bvzkvxfm6vd3i1n8fa0zmwnsyz5kmhavcynbvpj"; depends=[MASS]; }; - dada2 = derive2 { name="dada2"; version="1.10.1"; sha256="0858c4s7sqb54ida79dh3a6d0fxzh3c4pmxmp3vr0cnfndrlk5r1"; depends=[BiocGenerics Biostrings data_table ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; - dagLogo = derive2 { name="dagLogo"; version="1.20.0"; sha256="1h4mhhnmnfqifa1mxk03j1y7w1azai705q95wdji2nvyhi7gkas2"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; }; - dcGSA = derive2 { name="dcGSA"; version="1.10.1"; sha256="1vma7gwl9ai8mj7zxc02g203cljcnyri69jgi7xl963pizya7cnj"; depends=[BiocParallel Matrix]; }; - ddCt = derive2 { name="ddCt"; version="1.38.0"; sha256="1gfxk55f8cgq9bs7rab01qi9093kmjii4833bxcxjhfx1mgsmgzz"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; - ddPCRclust = derive2 { name="ddPCRclust"; version="1.2.0"; sha256="1s9k86l0jc3jkwc2y85ccmn3jlfcwp985xhjfnv43rlfsi181063"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; - debrowser = derive2 { name="debrowser"; version="1.10.9"; sha256="1xdqw7scpzc4mw73f5la7km0yyvzhl5w9kxigpnlypba0npslpby"; depends=[annotate AnnotationDbi clusterProfiler colourpicker d3heatmap DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; - decontam = derive2 { name="decontam"; version="1.2.1"; sha256="0zi5nc39xvdrqdikqfvwhi5jly2gqv3z9r4wwbw78ijgwblvd8n1"; depends=[ggplot2 reshape2]; }; - deepSNV = derive2 { name="deepSNV"; version="1.28.0"; sha256="0maswzsfv9rw01v9alq9jbifc8lg6g2h65338v9chb05dkj03baj"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; - deltaGseg = derive2 { name="deltaGseg"; version="1.22.0"; sha256="02mjlrs3rvlbqdsw9nw03y5ifzkfy1n5r7h4811ghvizy8cdxpqj"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; - derfinder = derive2 { name="derfinder"; version="1.16.1"; sha256="1wdig8zfpq1635b83npmram5zwxslgfgv3npswkjjjnbfzngwz2m"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; - derfinderHelper = derive2 { name="derfinderHelper"; version="1.16.1"; sha256="1a37q7gkg16wyjznbjgn974kmw0rh2dmknvbf9rpzp9hcibzkcqf"; depends=[IRanges Matrix S4Vectors]; }; - derfinderPlot = derive2 { name="derfinderPlot"; version="1.16.1"; sha256="0pa4ycm3f1bim8byy8ygb8z2r7441rwhmbj7y538scihrsk1q03k"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer RefManageR reshape2 S4Vectors scales]; }; - destiny = derive2 { name="destiny"; version="2.12.0"; sha256="1iay17mrhsfmpwl920rh1nip5b6ybva4h6bna0yld04paq5yva67"; depends=[Biobase BiocGenerics ggplot2 ggthemes igraph Matrix proxy Rcpp RcppEigen scales scatterplot3d smoother SummarizedExperiment VIM]; }; - dexus = derive2 { name="dexus"; version="1.22.1"; sha256="109sk2nxaqx0jalw06r3ydy6wdbac76j66sh9431b480p6bcgf1r"; depends=[BiocGenerics]; }; - diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.64.0"; sha256="00f088phbix7wrcjrpf3n2a2ps102sbc85f4fg5sqwdw6bvchk9c"; depends=[minpack_lm]; }; - diffHic = derive2 { name="diffHic"; version="1.14.0"; sha256="1yjsvwwai9jflg743nyksj7krm0f2pdy2y2rwnmd3cpwh73yy6al"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; - diffcoexp = derive2 { name="diffcoexp"; version="1.2.0"; sha256="1kkm0mw7q81yls750ky9rvx0n9iljgq8j5p9h08yxpr46jc3j8k0"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; - diffcyt = derive2 { name="diffcyt"; version="1.2.23"; sha256="08fsvn0phj4f3ih65vizi6bxj6yfwpanran5p79iv28gxbnxzll0"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; - diffloop = derive2 { name="diffloop"; version="1.10.0"; sha256="0fi1vvzfifhdgcnal1axn69dqbgpjqsicjgqw6gj41db50zi1fi6"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; }; - diffuStats = derive2 { name="diffuStats"; version="1.2.0"; sha256="1hg8scxhndgp0r4m5r7rjliirb4371g9d3lqx2h9mgshadwz5h0r"; depends=[expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; - diggit = derive2 { name="diggit"; version="1.14.0"; sha256="1kpi1ahwc90mpfwmy6rsf4argf7fss99lr2v0s99aj39m3lwd2dw"; depends=[Biobase ks viper]; }; - discordant = derive2 { name="discordant"; version="1.6.1"; sha256="12zh1qm7l7zq310y4n5fimia1jkxm3ia81br0illyna0kx10b9wq"; depends=[Biobase biwt gtools MASS]; }; - dks = derive2 { name="dks"; version="1.28.0"; sha256="0md8x07f117clhxmmrqaki5g5y8r13c4yrw8vk6yvcsf9prybdah"; depends=[cubature]; }; - dmrseq = derive2 { name="dmrseq"; version="1.2.5"; sha256="1dlzkflfklipirwiam2bi65j6fy9kcpgigyayfiwss3l1nr9dz70"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; - doppelgangR = derive2 { name="doppelgangR"; version="1.10.1"; sha256="14jlrvx6xb6h8x9qg0fm0hb11dk906ja8vfl1wn6wgdrh8fw6brl"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; - drawProteins = derive2 { name="drawProteins"; version="1.2.0"; sha256="13zqpghzpqg92i4mlfmvwx1l1mb7swqmyhisqjp546jzs7vixv25"; depends=[dplyr ggplot2 httr readr stringr]; }; - dualKS = derive2 { name="dualKS"; version="1.42.0"; sha256="0mn0mjzncd53wq0jwq2gfcj3mcsfl81hgsaxnf1dqjwqnw4jy1y3"; depends=[affy Biobase]; }; - dupRadar = derive2 { name="dupRadar"; version="1.12.1"; sha256="1dmkzhdwzw2r0srwi96g0csxcsg2m8xh1446p75byjarvmyzmqh8"; depends=[Rsubread]; }; - dyebias = derive2 { name="dyebias"; version="1.42.0"; sha256="1ml85klh9mwxmz8h2yjagx4sl0dnzg4ijk4pa154njznxr8kqccz"; depends=[Biobase marray]; }; - easyRNASeq = derive2 { name="easyRNASeq"; version="2.18.4"; sha256="16ffm3gdag8fdm8pbq7pnxmrzndbig9ryw981hcplk847ij1rxjc"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; - ecolitk = derive2 { name="ecolitk"; version="1.54.0"; sha256="0gbw2kdfnyjlq0paqy8hlz8qmaczfa5qx9wzj3ax3vms5v6n58qp"; depends=[Biobase]; }; - edge = derive2 { name="edge"; version="2.14.0"; sha256="0gcwnw9c6qc9b207vlchnw59d025jrdm4b7w5iiw721djwwawdzf"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; - edgeR = derive2 { name="edgeR"; version="3.24.3"; sha256="15yimsbsxmxhlsfmgw5j7fd8qn08zz4xqxrir1c6n2dc103y22xg"; depends=[limma locfit Rcpp]; }; - eegc = derive2 { name="eegc"; version="1.8.1"; sha256="14jjd27hblz1ls1463vd4ymdq58h9as82lj160smy0n8jqpc5nhh"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; - eiR = derive2 { name="eiR"; version="1.22.0"; sha256="07lnpgaplw6d63c3wjas5n8rxhgmk75qkq3nvp7w26lmgi4ysz6z"; depends=[BiocGenerics ChemmineR DBI digest gespeR RcppAnnoy RCurl RUnit snow snowfall]; }; - eisa = derive2 { name="eisa"; version="1.34.0"; sha256="1717bpmrr1kmd1a8rqlarhqcrk786vjw55shn5sd8c89f25vspdx"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; }; - enrichplot = derive2 { name="enrichplot"; version="1.2.0"; sha256="0cxqfpy6py4k3z3lnlkiwx89r4ymfpdc4hm25dfpazqgjflz5is7"; depends=[AnnotationDbi cowplot DOSE europepmc ggplot2 ggplotify ggraph ggridges GOSemSim gridExtra igraph purrr RColorBrewer reshape2 UpSetR]; }; - ensemblVEP = derive2 { name="ensemblVEP"; version="1.24.2"; sha256="02akxzgf4q6n41pghx2fwk3l9b74db0vdlycnvv868d0rfb11d0x"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="2.6.8"; sha256="0gijx2l2y00h6gfj3gfr7rd4vva6qf2vkfdfy5gdmvqlxy84ka38"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; - epiNEM = derive2 { name="epiNEM"; version="1.6.0"; sha256="1pzcajgqsm6mvw8i7aav0918856ghndrdp93831s6zmdkgxzpw2v"; depends=[BoolNet e1071 graph gtools igraph lattice latticeExtra minet nem pcalg RColorBrewer]; }; - epigenomix = derive2 { name="epigenomix"; version="1.22.0"; sha256="0cyf35fygr3rgkcfqhb9p9xgl1lydqprzhn3m189yqm3xqck41il"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; - epivizr = derive2 { name="epivizr"; version="2.12.0"; sha256="0ms29c5vl0nn8p4v1l5falmwc8xb6wa8fjbfwrgpz8dphidp7mnm"; depends=[epivizrData epivizrServer GenomicRanges IRanges S4Vectors]; }; - epivizrChart = derive2 { name="epivizrChart"; version="1.4.0"; sha256="03dnkx8zqrhgijipv72ylcrwparqjihzld2ln6dir989kwv75f7l"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; - epivizrData = derive2 { name="epivizrData"; version="1.10.0"; sha256="0m7bn9v9j8jsja36x5vj2bs9wg3dw5845r47mw4200j1j4irj9jb"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; - epivizrServer = derive2 { name="epivizrServer"; version="1.10.0"; sha256="17h7cghi9md7yzny07jc0749cpwx5jda78vk9g2db0bf6q91qjq6"; depends=[httpuv mime R6 rjson]; }; - epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.10.0"; sha256="0jvx2kc0wqq7rzi1a3lv94i33cgcqhdpny4563kgjcz9g3qaggsd"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; - erccdashboard = derive2 { name="erccdashboard"; version="1.16.1"; sha256="0xf5nfzjp0jbhyvcia0bxj8rwcmd033gxgvrwrlcq2535v27sdz9"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; - erma = derive2 { name="erma"; version="0.14.0"; sha256="0hj9iz904rr1y66442lkxjywkw1ydyxxlhmjirawbf09ic5ad4g9"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; - esATAC = derive2 { name="esATAC"; version="1.4.5"; sha256="0qi6f6pdyjzvsvxl6k5517vkb9c59wwf09439a4g5jx2hp383swq"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot DiagrammeR digest GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2016 knitr magrittr motifmatchr R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; - esetVis = derive2 { name="esetVis"; version="1.8.0"; sha256="0n2b7qkgy0gh9jfxi5mgsr8g41141435maq1yniw9mqa3hddwjjp"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; - eudysbiome = derive2 { name="eudysbiome"; version="1.12.0"; sha256="09lhzfhlmrw6f50c6d21lmyfh3k4hwrg6waiv1qjg6iavhnbc2a0"; depends=[Biostrings plyr R_utils Rsamtools]; }; - exomeCopy = derive2 { name="exomeCopy"; version="1.28.0"; sha256="1y475ka8lkf3mh4xj0qvgk0nd0gf497dym9bvl5wpss1fqsks6im"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - exomePeak = derive2 { name="exomePeak"; version="2.16.0"; sha256="0i063k0b9d6vvixp52qkg63nlpqzbq2dhf0ylgwchjjk4zsdz5vn"; depends=[GenomicAlignments GenomicFeatures Rsamtools rtracklayer]; }; - explorase = derive2 { name="explorase"; version="1.46.0"; sha256="0h12i2fh7jm0xq0mxy37rcp3pbg18l88l380jsb9jn02rrgkirkd"; depends=[limma rggobi RGtk2]; }; - fCCAC = derive2 { name="fCCAC"; version="1.8.0"; sha256="04mzxvvm1yssdjdibppbl5yv6zpssk3chm222nhs2h7mn4a30rwq"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; - fCI = derive2 { name="fCI"; version="1.12.0"; sha256="0wxc6nhl5gcz70i9nbj7caxgif3bpajng8h8pckarflms1va2ic0"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; - fabia = derive2 { name="fabia"; version="2.28.0"; sha256="1ps10cqldbz99rszxqznqc3vlci4fmhyhwcim8bfch197b1pnfl5"; depends=[Biobase]; }; - factDesign = derive2 { name="factDesign"; version="1.58.0"; sha256="113sjbx1r7yzps0mjpka5mf0mx324z4vg0adl7k965p3r0cv3jwm"; depends=[Biobase]; }; - farms = derive2 { name="farms"; version="1.34.0"; sha256="02vb8cy2j53l05naifrafw4pa48ay3hbsxrlm5s3nbmy4cma6rwr"; depends=[affy Biobase MASS]; }; - fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.18.0"; sha256="109db3kv8rf7dwlsn2cyv5s44b86nmzj746awf28rc03f6ih8f13"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; - fastseg = derive2 { name="fastseg"; version="1.28.0"; sha256="1l8mdjpfpgwqdss2ywjkb8b4h55wf8v6kmyxdlvy04ds2hj16sb1"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; - fdrame = derive2 { name="fdrame"; version="1.54.0"; sha256="1srv11bwyjxlvgv5hky4afwn2bhc8kdvra61jc1dn81qaj5vx41a"; depends=[]; }; - ffpe = derive2 { name="ffpe"; version="1.26.0"; sha256="1bcpdj978wiwfwfbpvnj622wqq4axh82djn17l5vrm20p2hgm74n"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; - fgsea = derive2 { name="fgsea"; version="1.8.0"; sha256="0cxxvlmg340l5l5fz4abbwppiri0ibg4navvq5k3wg511mz8ma2q"; depends=[BiocParallel data_table fastmatch ggplot2 gridExtra Matrix Rcpp]; }; - flagme = derive2 { name="flagme"; version="1.38.1"; sha256="1llzkq5944kgh32xns67f8bcfvpgia809b1ly1nfhpa2mpfsvyr1"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; - flipflop = derive2 { name="flipflop"; version="1.20.0"; sha256="100ia0j4ir61ihriyz36jnxpa9s4ivs35fifs4yzfiysf7lma3al"; depends=[GenomicRanges IRanges Matrix]; }; - flowAI = derive2 { name="flowAI"; version="1.12.7"; sha256="1s4mll9zdn84dlf08p91lacs70rijq2rv717f2rk6m71a48l6ac4"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; - flowBeads = derive2 { name="flowBeads"; version="1.20.1"; sha256="06w9lfsam3mv9gv6qigsjw9vl169kcyaa7vrh2ii138gry20b9qz"; depends=[Biobase flowCore knitr rrcov xtable]; }; - flowBin = derive2 { name="flowBin"; version="1.18.1"; sha256="1fdj5ziyc10fp27jarx18z97vxnf7d5zy2nwbia6x441svrvc534"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; - flowCHIC = derive2 { name="flowCHIC"; version="1.16.1"; sha256="1472c1jdg9zk94pw84nbr8042rh7k7mrdbyjncqcigrx12dhgdh6"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; - flowCL = derive2 { name="flowCL"; version="1.20.1"; sha256="013b81ab3pmfb3n4430ihwc2qbgqf3iyyykzmqdhqs8llcrpqvph"; depends=[graph Rgraphviz SPARQL]; }; - flowClean = derive2 { name="flowClean"; version="1.20.0"; sha256="0m8n75gkf1dwhs4hyk1jfqvsmb2lymvi0znikb1gi8bkh9224wvk"; depends=[bit changepoint flowCore sfsmisc]; }; - flowClust = derive2 { name="flowClust"; version="3.20.1"; sha256="1wk2hwc9fbhjqw0cic3mgh5xg82nwg0m6548b5cvn5f8ywxs2f4m"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph mnormt]; }; - flowCore = derive2 { name="flowCore"; version="1.48.1"; sha256="04cmydy10i1zrd293cjam7v8i1habm27m5ggpp52jcsy7db9gg7p"; depends=[BH Biobase BiocGenerics corpcor graph MASS matrixStats Rcpp rrcov]; }; - flowCyBar = derive2 { name="flowCyBar"; version="1.18.1"; sha256="0lnfn2xxd3zbr1jn1vdd6b6yaljddn525fsb7g0i7nsl3py89nfy"; depends=[gplots vegan]; }; - flowDensity = derive2 { name="flowDensity"; version="1.16.1"; sha256="0kmy3k54aghv1vkdmply5pwyr8dxfipa1qi1b7xrqa7zbwa8dxq4"; depends=[car flowCore flowWorkspace gplots RFOC rgeos sp]; }; - flowFP = derive2 { name="flowFP"; version="1.40.1"; sha256="1dq634pw4d89gmqw71nzb2paqlzkm2q53xv9rbl4rpglxb3325gb"; depends=[Biobase BiocGenerics flowCore flowViz]; }; - flowFit = derive2 { name="flowFit"; version="1.20.1"; sha256="0f03p0jki13lip694ahd0ym3ixlmj60vkspkzcwq88mpkvmj03jn"; depends=[flowCore flowViz gplots kza minpack_lm]; }; - flowMap = derive2 { name="flowMap"; version="1.20.1"; sha256="0bsy52jhgj81xd20ycdz35n70k71c40hx5lm25gh5v6sxh5598qw"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; - flowMatch = derive2 { name="flowMatch"; version="1.18.1"; sha256="03qkisbfzpkz6a4l91gg8biyk5apc2cjqrvilrf9yawp2gypff62"; depends=[Biobase flowCore Rcpp]; }; - flowMeans = derive2 { name="flowMeans"; version="1.42.1"; sha256="1jxhga0wlgn69h4mplzb140grxaxxb0psjgnr9jkcm9c6d6mh9qp"; depends=[Biobase feature flowCore rrcov]; }; - flowMerge = derive2 { name="flowMerge"; version="2.30.1"; sha256="1dn6wxaix56r3fw273prbajc84h1k1b03q6wh0pfhy0gr6qk8wgw"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; - flowPeaks = derive2 { name="flowPeaks"; version="1.28.1"; sha256="08g8bnb6h9gc34qx511gd5r9wrfxd6wr1wfzgazswc3idg5pqli6"; depends=[]; }; - flowPloidy = derive2 { name="flowPloidy"; version="1.8.0"; sha256="0s2d541id8mf3igidn5n7v6d3g21yaskzc7kx9zvywx9391sd9qx"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; - flowPlots = derive2 { name="flowPlots"; version="1.30.1"; sha256="1ygbd62kyqpmlln55m65n0jb8k7kdqxpihwlrp5yickxv7g99zx6"; depends=[]; }; - flowQB = derive2 { name="flowQB"; version="2.10.1"; sha256="0cpp6pn1w2ccixxclx6cmv7hzsqc0bcsbwyy1vz2lvwrrmvsk8z3"; depends=[extremevalues flowCore]; }; - flowStats = derive2 { name="flowStats"; version="3.40.1"; sha256="0krj1x5jpzl6ravqmb7ccgmdf246627sd32zp8sblb1fz9nr0pzp"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow RColorBrewer]; }; - flowTime = derive2 { name="flowTime"; version="1.6.1"; sha256="1an5cx6dbl6y7llss1w27v5csz7pvfng7490ig3fynnkfldl8n52"; depends=[flowCore plyr]; }; - flowTrans = derive2 { name="flowTrans"; version="1.34.1"; sha256="0wav5y4gzbciyvv9php7lkhqr5h1gwk42qx0665df3zcbwxkahcb"; depends=[flowClust flowCore flowViz]; }; - flowType = derive2 { name="flowType"; version="2.20.1"; sha256="0dpbkcf7rh1sf8hi5mmxjq6nd72w8xhjcxf2lzfn0iyxvdfb76w3"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; }; - flowUtils = derive2 { name="flowUtils"; version="1.46.1"; sha256="0vk8xq623p6pfp92fllza2vyxm4b92w98dc6v3d9ik88nyp1ppzz"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; - flowVS = derive2 { name="flowVS"; version="1.14.1"; sha256="06kprjxrjywvc1w5ic1753npz5p4k8fhqx6361wqzzzhzihj6gy6"; depends=[flowCore flowStats flowViz]; }; - flowViz = derive2 { name="flowViz"; version="1.46.1"; sha256="0php2rng4da7jk98rvmkfwm994qnqkrlqmqpqy4kl19w3gsc00i1"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; - flowWorkspace = derive2 { name="flowWorkspace"; version="3.30.2"; sha256="19ifpwpk9rmmfm647zm419k50hna8ib0ad75l04xbggdm6s3vm41"; depends=[BH Biobase BiocGenerics cytolib data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra matrixStats ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz RProtoBufLib scales stringr XML]; }; - flowcatchR = derive2 { name="flowcatchR"; version="1.16.0"; sha256="0cwfm8d3s7nvkfm0zfx84mcamyszc8cwwy7b9rn9m27rj3q80f1z"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; - fmcsR = derive2 { name="fmcsR"; version="1.24.0"; sha256="0dl39066y0s391hczpi3482dwwpsp1767f6n881n00sv7pb4znxy"; depends=[BiocGenerics ChemmineR RUnit]; }; - focalCall = derive2 { name="focalCall"; version="1.16.0"; sha256="06x6d5j17wabdy03r4h9clmdp69wbxgzpsvalrmg8l4yyj9z7lrc"; depends=[CGHcall]; }; - frma = derive2 { name="frma"; version="1.34.0"; sha256="1g48s0kji9ln4z80h704j1rc5vji9g8kx8mgngi95k7vj744firg"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; - frmaTools = derive2 { name="frmaTools"; version="1.34.0"; sha256="1n1i5xsn38ml7h34pkv4xlx8yvrf4vpcjrz92sfzmrff531gf3a2"; depends=[affy Biobase DBI preprocessCore]; }; - funtooNorm = derive2 { name="funtooNorm"; version="1.6.0"; sha256="0s4vafjskzyc6hf616cbi7g9prf6lh7fmi7zywr97pr11390n7qg"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; - gCMAP = derive2 { name="gCMAP"; version="1.26.0"; sha256="1ql9nxlj4wgc22g699lxsn57iam7k3w33v3cinhywsy9zfswawh9"; depends=[annotate AnnotationDbi bigmemory bigmemoryExtras Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; }; - gCMAPWeb = derive2 { name="gCMAPWeb"; version="1.22.0"; sha256="0jvn3h3hn2b8av0c901gbidhrkgkhhm4027qymn5dhg4xsg2dayg"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; }; - gCrisprTools = derive2 { name="gCrisprTools"; version="1.10.1"; sha256="148ggbbhvg0ja55zs1vlcjpjgcc50mgfq58ixfi7pifiaszzwh6s"; depends=[Biobase ggplot2 limma PANTHER_db rmarkdown RobustRankAggreg]; }; - gQTLBase = derive2 { name="gQTLBase"; version="1.14.0"; sha256="1lbk1m1mkvbk30flk5pf3pcrnm2s0sj5r48kbjgad39dsvd8zgqx"; depends=[BatchJobs BBmisc BiocGenerics bit doParallel ff ffbase foreach GenomicFiles GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; }; - gQTLstats = derive2 { name="gQTLstats"; version="1.14.1"; sha256="1rkbnb3h02fdksc4nacqvmq4jgbj9fz4hm7j51yr2ggcgcykwraa"; depends=[AnnotationDbi BatchJobs BBmisc beeswarm Biobase BiocGenerics doParallel dplyr erma ffbase foreach GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges ggbeeswarm ggplot2 gQTLBase HardyWeinberg Homo_sapiens IRanges limma mgcv plotly reshape2 S4Vectors shiny snpStats SummarizedExperiment VariantAnnotation]; }; - gaga = derive2 { name="gaga"; version="2.28.1"; sha256="017ga7m85qzxvfvg13gilsikc06vr8ggfp07aw36gdn9q8by76d5"; depends=[Biobase coda EBarrays mgcv]; }; - gage = derive2 { name="gage"; version="2.32.1"; sha256="02g796sb1800ff0f1mq9f2m5wwzpf8pnfzajs49i68dhq2hm01a8"; depends=[AnnotationDbi graph KEGGREST]; }; - gaggle = derive2 { name="gaggle"; version="1.50.0"; sha256="1yj10aahr1pmn7kspiplczalr1awmybr320y49cadh17l3p3i224"; depends=[graph rJava RUnit]; }; - gaia = derive2 { name="gaia"; version="2.26.0"; sha256="1a3lmazx5dlb484llfvwk6b4g89r3dcbmkjz7wah44kpyp0k5lrv"; depends=[]; }; - garfield = derive2 { name="garfield"; version="1.10.0"; sha256="1hcb4dvhir20ldfr7zrd0b3xcdpkafb0sc3gwns4651a9hs2cx8j"; depends=[]; }; - gcapc = derive2 { name="gcapc"; version="1.6.0"; sha256="00jv9c231s4zr02nl11qcs8qlbwklyc0iis1c4n2ifkp8kcd1c34"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; - gcatest = derive2 { name="gcatest"; version="1.12.0"; sha256="14902mc3vnnj64xxhj5dzd787r59wj0dryn074n4yyw0lyzfydwk"; depends=[lfa]; }; - gcrma = derive2 { name="gcrma"; version="2.54.0"; sha256="1v5fi98gdmj002ryq0rgsg2l4x3m3w5pz4h3bx4v8lk15azafgim"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; - gdsfmt = derive2 { name="gdsfmt"; version="1.18.1"; sha256="1axbs23armc8r4nmfnhv6ripxzh551lgwd0580nknif4jj1a98ga"; depends=[]; }; - geNetClassifier = derive2 { name="geNetClassifier"; version="1.22.0"; sha256="079v4jrscq93kapv4676d4zsy3rk7j547pn9hsj7fi0sypv9sg4h"; depends=[Biobase e1071 EBarrays minet]; }; - geecc = derive2 { name="geecc"; version="1.16.1"; sha256="0axbina6xvv9l8ymswlxa989kzif2cy5njfis8g6pfnx0dfmnrmp"; depends=[gplots hypergea MASS Rcpp]; }; - genArise = derive2 { name="genArise"; version="1.58.0"; sha256="0drncw83b214w8fk11z3dilshd9p9z4irb23gbvkq67xm62nbkxn"; depends=[locfit tkrplot xtable]; }; - genbankr = derive2 { name="genbankr"; version="1.10.0"; sha256="18pw66ilh7mnlar94885k182hay05vana7pjki38bb2jbifk4m2f"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; - geneAttribution = derive2 { name="geneAttribution"; version="1.8.0"; sha256="1wngaq654gzp2llk8zk8z3gmnpb3lwx4l6sfi9dn8n551q6lbbcg"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; - geneClassifiers = derive2 { name="geneClassifiers"; version="1.6.0"; sha256="0nxp2jmrq3fyhvgys4gxycqc7v2nixsa3mk57fq3339xilcxzycp"; depends=[Biobase BiocGenerics]; }; - geneRecommender = derive2 { name="geneRecommender"; version="1.54.0"; sha256="1b6y5ilz1ffsqsb5y667sa9fi4h6hpwk4wgdiy13lq2vry9x7j0w"; depends=[Biobase]; }; - geneRxCluster = derive2 { name="geneRxCluster"; version="1.18.0"; sha256="0kg42vy1asv5gak2d9h3fm679yfai7d7n56nqig3dny5a0g04fmc"; depends=[GenomicRanges IRanges]; }; - geneXtendeR = derive2 { name="geneXtendeR"; version="1.8.0"; sha256="1nkaxzw8vdxafb9nb39lwdb6qj8z54p19l8rw1rdjy8dxlia262n"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; - genefilter = derive2 { name="genefilter"; version="1.64.0"; sha256="0p64s1n1627yafnp25wjr4b22p34lqw574fx2qg4s1m0lffh1z6i"; depends=[annotate AnnotationDbi Biobase S4Vectors survival]; }; - genefu = derive2 { name="genefu"; version="2.14.0"; sha256="1dapkgmjwxr6c62l72h217xrjnycnc3sc7qclmbrbwjl42c6ma1f"; depends=[AIMS amap biomaRt iC10 limma mclust survcomp]; }; - geneplast = derive2 { name="geneplast"; version="1.8.0"; sha256="06xvdsfjqg8jx8b1g8i829i8x8p2bxv57hzflh08nd6n91fys6qn"; depends=[ape igraph snow]; }; - geneplotter = derive2 { name="geneplotter"; version="1.60.0"; sha256="10khr0pznxf3m0f5gzck9ymljrwcv3vamfmpskd51yjh36lhllqz"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; - genoCN = derive2 { name="genoCN"; version="1.34.0"; sha256="164d9cwp6mngmmvk1lc7xs03w9sqqx7b3w4mrx94xg5f4k2jzv3m"; depends=[]; }; - genomation = derive2 { name="genomation"; version="1.14.0"; sha256="0g0v4alfpqlinqinjnyzl3mrjnpbdx9ri34mcaiqbvbvg8ic8wvg"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer RUnit S4Vectors seqPattern]; }; - genomeIntervals = derive2 { name="genomeIntervals"; version="1.38.0"; sha256="09ck7d1lklxh5rr8k4rfswlyi41a94siqpqfp6byf34qjhv9mxvv"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; - genomes = derive2 { name="genomes"; version="3.12.0"; sha256="18pwqjr01qwjn93vyf2pfp5n88djyb0vln78m8kl598pcxr7ifkh"; depends=[curl readr]; }; - genoset = derive2 { name="genoset"; version="1.38.0"; sha256="1z0iwp5pp3655kd63p3jf5fficd61p1i0g06p2n6pw4q38dp2h28"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - genotypeeval = derive2 { name="genotypeeval"; version="1.14.0"; sha256="0xi0n87g5qh1yswr3whv8wvmxswd66j6g8662qsfgy3cs69hxl3m"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; - genphen = derive2 { name="genphen"; version="1.10.3"; sha256="0hjfgy3q4x1ib91cxgszay7fvjaiqi62915pg4z3hd9xd9lpjiqn"; depends=[BH Biostrings doParallel e1071 foreach ranger Rcpp RcppEigen rstan rstantools StanHeaders]; }; - gep2pep = derive2 { name="gep2pep"; version="1.2.0"; sha256="1sxkps92hf85svngd5511j3sbwn8904nn9ijn168v7xzzmld3z5y"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; - gespeR = derive2 { name="gespeR"; version="1.14.1"; sha256="1d8jvwnmnd27860n9qk5500mi73kdnvzwkfsqjp0xzz6ji5l9khs"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; - ggbio = derive2 { name="ggbio"; version="1.30.0"; sha256="0wq49qqzkcn8s19xgaxf2s1j1a563d7pbhhvris6fhxfdjsz4934"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - ggcyto = derive2 { name="ggcyto"; version="1.10.2"; sha256="0nhwrsc4drswpyz6w3v3h5q0cwzi92a0kzx47n3x6drdjdrv4w21"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra ncdfFlow plyr RColorBrewer rlang scales]; }; - ggtree = derive2 { name="ggtree"; version="1.14.6"; sha256="0jp4djkjvhvidp8ic44wq527rjzsh5awqfll2g9bdlypmjs21494"; depends=[ape dplyr ggplot2 magrittr purrr rlang rvcheck scales tibble tidyr tidytree treeio]; }; - girafe = derive2 { name="girafe"; version="1.34.0"; sha256="13hk8rfldbwadqhy5mqcdzggili3ib6whwqcf85pl72x627iif5j"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; - glmSparseNet = derive2 { name="glmSparseNet"; version="1.0.0"; sha256="0aqcnqmnl977yc7lp9gb8a4hqaxdh2pjw2lhiw3vly933xzd78sc"; depends=[biomaRt dplyr forcats futile_logger ggplot2 glmnet loose_rock Matrix MultiAssayExperiment readr reshape2 rlang sparsebn sparsebnUtils STRINGdb stringr SummarizedExperiment survminer]; }; - globalSeq = derive2 { name="globalSeq"; version="1.10.1"; sha256="1vvhqn04b0kl0xdyp7ga4dlbvh15gw0f5nr8ssw7rr1flzcp1jik"; depends=[]; }; - globaltest = derive2 { name="globaltest"; version="5.36.0"; sha256="16v8rn25n87kk892c3yvmqdv03csqdrzp7krcr8w2y0wznys2cqn"; depends=[annotate AnnotationDbi Biobase survival]; }; - gmapR = derive2 { name="gmapR"; version="1.24.2"; sha256="0j4k5r2lx0kng2826vi9535pc7lflgqvwsqcq7bkbrzmc287k465"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - goProfiles = derive2 { name="goProfiles"; version="1.44.0"; sha256="0rpks421g0rbdcfnkfqpd5l22cysdcfljnmngq9pbgh04wpwi8f1"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; - goSTAG = derive2 { name="goSTAG"; version="1.6.1"; sha256="0ib9a1v9zblysmk7a6wrg6cj1q6is2s9mranb28nn2r067kfx77l"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; - goTools = derive2 { name="goTools"; version="1.56.0"; sha256="0w2mb8g5fnn7vm35cqw437f2sdiba4c72ay1n7frh0z1xc7hqc3r"; depends=[AnnotationDbi GO_db]; }; - goseq = derive2 { name="goseq"; version="1.34.1"; sha256="1j87j98cajcjqabv6rb6zmcqxsqxxhbb3w60w1iink4rhsh8m3mn"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; - gpart = derive2 { name="gpart"; version="1.0.3"; sha256="0aqz4b8qbll80xqrf5x9y4y0iw3f94ncvnhw3ifalj2rh39p15cw"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - gpls = derive2 { name="gpls"; version="1.54.0"; sha256="14sffq2h6hqlzaq1nzw34rkg7nnshfp6k5r3wyvavq6k25384jr0"; depends=[]; }; - gprege = derive2 { name="gprege"; version="1.26.0"; sha256="0b2zrxggljfgr8w2ns7h80ymqrvfi8kaliy32k2najm089kpv8dy"; depends=[gptk]; }; - graph = derive2 { name="graph"; version="1.60.0"; sha256="1kgnsm6f0vmb9qbkmmrnvxbwqc0gar17dq5gv1v10hrksw6mh64i"; depends=[BiocGenerics]; }; - graphite = derive2 { name="graphite"; version="1.28.2"; sha256="0jdi5s7ffl7snwxrbk1nj8vb4db5wv328ipypyl8ddrzk6rljcy5"; depends=[AnnotationDbi checkmate graph httr rappdirs]; }; - groHMM = derive2 { name="groHMM"; version="1.16.0"; sha256="1ph92fv44b90v7mk4b1mjvv0dlrhl8ba01klxbnd0vs4qn9zxplh"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; - gsean = derive2 { name="gsean"; version="1.2.1"; sha256="0amx19163pfff16hncphh4nccdp7br2f1v5ddzynzx8drslywz1p"; depends=[fgsea PPInfer]; }; - gtrellis = derive2 { name="gtrellis"; version="1.14.0"; sha256="17c43vs6m6hj90x5is0pbcpcv59gg9z98c47hnvlypgcqch38h6v"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; - gwascat = derive2 { name="gwascat"; version="2.14.0"; sha256="1fnyjydhicq4ayrv0lqjv48h9bd72h40s6l82g1h2ng0icwz38g0"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gQTLstats graph Gviz Homo_sapiens IRanges Rsamtools rtracklayer S4Vectors snpStats SummarizedExperiment VariantAnnotation]; }; - gwasurvivr = derive2 { name="gwasurvivr"; version="1.0.0"; sha256="0f1p2l6ypbrnaqlmqsjz5rfa6afd4kqhkrniqi7hfwjza7myrcvp"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; - h5vc = derive2 { name="h5vc"; version="2.16.0"; sha256="1jhl2cv8rd9sfw5adm81ncpz3ysyb9wdvjzqg7k48rh5ycgi9whz"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rsamtools S4Vectors]; }; - hapFabia = derive2 { name="hapFabia"; version="1.24.0"; sha256="1y14gmm4vj5qvnkbssqr4scqrl86v949kd6y0ic48p5rlqcgsjj3"; depends=[Biobase fabia]; }; - heatmaps = derive2 { name="heatmaps"; version="1.6.0"; sha256="1srppr0y50y2j9ajscc93778jk2s7pnaqnf4h7yf12cx8185izsj"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; - hiAnnotator = derive2 { name="hiAnnotator"; version="1.16.0"; sha256="0hbrrvdl41nidsihyalnqridg87gidpnzdb6scf07jyfqmdym862"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; - hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.18.0"; sha256="0azmgzczkbjhg8fpl7js4g3s44lna3jzsdccchfv715smykxs24n"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl rSFFreader sonicLength]; }; - hicrep = derive2 { name="hicrep"; version="1.6.0"; sha256="0j92hg6qk9rd84lkl63zirwyydvnsrsgwibyv8ndrap4nw9hiswv"; depends=[]; }; - hierGWAS = derive2 { name="hierGWAS"; version="1.12.0"; sha256="0fsp5zyaz7kdgyyfnzvzcvsscxh69skvkn245sw41svq3gyswpcl"; depends=[fastcluster fmsb glmnet]; }; - hierinf = derive2 { name="hierinf"; version="1.0.0"; sha256="0p0kxqap5qdrfgh6jcn94c7hdk9k3xp178wz5ip1c3x3pqj30ndh"; depends=[fmsb glmnet]; }; - hipathia = derive2 { name="hipathia"; version="1.4.1"; sha256="1hnq2rl2g1an7q2hxc3s7sn1hynhapmb5qjj4ishcpv0irygb8ha"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; - hmdbQuery = derive2 { name="hmdbQuery"; version="1.2.0"; sha256="0wliaddym62p9gf57y349q854jsng5chh5jd0gh3j3pdg5nlb7c0"; depends=[S4Vectors XML]; }; - hopach = derive2 { name="hopach"; version="2.42.0"; sha256="0mrc9yw1gwk6nx0bdcckphd5n13si3yvf3brn5yyg6xnl1b019c3"; depends=[Biobase BiocGenerics cluster]; }; - hpar = derive2 { name="hpar"; version="1.24.0"; sha256="1pm3k8apgynmdzv2d0chca3b636kcai3b1x861fyv1m3xs6msgxn"; depends=[]; }; - htSeqTools = derive2 { name="htSeqTools"; version="1.30.0"; sha256="11lywvkgl07fd2f82j00lw8zbvdg4g2aaa2w670vhh24v5w38xng"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS S4Vectors]; }; - hyperdraw = derive2 { name="hyperdraw"; version="1.34.0"; sha256="0widxxs8rk9xmpzwj4pmxg5px2ym2g2psqiwnqnhvd0pqhfpssvr"; depends=[graph hypergraph Rgraphviz]; }; - hypergraph = derive2 { name="hypergraph"; version="1.54.0"; sha256="1qhn3y3wvh2azbcabi95zbpdlv0y1fhrw3l8w7qgi78asiq5b3jp"; depends=[graph]; }; - iASeq = derive2 { name="iASeq"; version="1.26.1"; sha256="1qnpdsqpgi9bp39vyhdhjajdq552gd0q5pb23p274w3zr9sw6v6h"; depends=[]; }; - iBBiG = derive2 { name="iBBiG"; version="1.26.0"; sha256="02pw4v01ck6kfpylbymy46wsavcpf1q9xmrz1fywb1z5rday2kdb"; depends=[ade4 biclust xtable]; }; - iBMQ = derive2 { name="iBMQ"; version="1.22.0"; sha256="08lw0a4c9gp3vx6ggrxmsr2lgikfzw5gdw3ri08f89cqqmb6cazi"; depends=[Biobase ggplot2]; }; - iCARE = derive2 { name="iCARE"; version="1.10.3"; sha256="1m58fprg00ns55cgbd63dn9276hx3351r69cwskrrsl68kza3i2r"; depends=[gtools Hmisc plotrix]; }; - iCNV = derive2 { name="iCNV"; version="1.2.1"; sha256="10kqd00sfq1v6lyydif7a8nwc4xg9z3db70p1c3s4y2iyia2kzdk"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; - iCOBRA = derive2 { name="iCOBRA"; version="1.10.0"; sha256="0i1swrm31g0zffi5pm48bfvdfqpd32d0zdchkbyipz96al46jnld"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; - iCheck = derive2 { name="iCheck"; version="1.12.0"; sha256="0wsgplym9kf1v7lvnnkxxgs9d9ahhb456vs9kgxydik94hyxpiz4"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; - iChip = derive2 { name="iChip"; version="1.36.0"; sha256="1ak11v8xywgqximfy99g3d2lyci7pj0r4p1yy6g77j8bwf1frz5d"; depends=[limma]; }; - iClusterPlus = derive2 { name="iClusterPlus"; version="1.18.0"; sha256="08w6f1ad1mc05ws7jdq1j6sn3rflbdp1q5nii09a6qjx83micr4n"; depends=[]; }; - iGC = derive2 { name="iGC"; version="1.12.0"; sha256="1m3mhxkvxsswmk6sqd78brx94pwyzc3z71kv2dzxj1409g6s1h25"; depends=[data_table plyr]; }; - iPAC = derive2 { name="iPAC"; version="1.26.0"; sha256="01s5sgkid33jhzkjk7mdkdn48asp4ibj8b9r5cx5f3ngmkbfpdql"; depends=[Biostrings gdata multtest scatterplot3d]; }; - iSEE = derive2 { name="iSEE"; version="1.2.4"; sha256="0n6xc7h655vr0n5m8kkrzqda7nyjm4ixbgymf14imwrw37h3arzx"; depends=[AnnotationDbi BiocGenerics colourpicker cowplot dplyr DT ggplot2 igraph mgcv rentrez reshape2 rintrojs S4Vectors scales shiny shinyAce shinydashboard shinyjs SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; - iSeq = derive2 { name="iSeq"; version="1.34.0"; sha256="0hlslyypijb4w9m01xkn6r8svs0kkp4nbv4xdz844pvyyxcn4afc"; depends=[]; }; - iasva = derive2 { name="iasva"; version="1.0.1"; sha256="1cmbsa75fhs5zxjlfijwknk5s5i6w9q7r7xn34m3hz0y9asg62fc"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; - ibh = derive2 { name="ibh"; version="1.30.0"; sha256="0wghj4qbnfg7zy1pbz580x9m1wszlhiyc34s9sd4q5spviz8dxh5"; depends=[simpIntLists]; }; - icetea = derive2 { name="icetea"; version="1.0.1"; sha256="11l0m6r6rrw8g4r7zabf6sy894sa9bqcsr6x7kbnk3hdmr3lcwfh"; depends=[BiocGenerics BiocParallel Biostrings csaw edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; - ideal = derive2 { name="ideal"; version="1.6.1"; sha256="0d3rym7lfnaqpr7dlcxq2mf0p2wh45y9glx5m3isf5z352y81bd9"; depends=[AnnotationDbi BiocParallel d3heatmap DESeq2 dplyr DT GenomicRanges ggplot2 GO_db goseq GOstats gplots IHW IRanges knitr limma pcaExplorer pheatmap rentrez rintrojs rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; - idiogram = derive2 { name="idiogram"; version="1.58.0"; sha256="0m4p1ar2z7wj8zk24kiazwr8i55b0b6i7j03skqzcgy5jdv3jzyp"; depends=[annotate Biobase plotrix]; }; - igvR = derive2 { name="igvR"; version="1.2.0"; sha256="1g5q877hpwckf3m2qvgysvwa9ggxg99mbmk0vkqsyamqxh74pwx6"; depends=[BiocGenerics BrowserViz GenomicRanges httpuv rtracklayer VariantAnnotation]; }; - illuminaio = derive2 { name="illuminaio"; version="0.24.0"; sha256="1rdp9b4xlv91yzba7pd7k50s3nkljfxmdmyz5jl0j8ybhmpl6rns"; depends=[base64]; }; - imageHTS = derive2 { name="imageHTS"; version="1.32.1"; sha256="10syni3cfl1n4p7gkskkcd0vrfkzg95kjrr16hbvypndrfp3wmhg"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; - immunoClust = derive2 { name="immunoClust"; version="1.14.1"; sha256="0ncb6szwd5ghh5x3bi9d3dqmfgyjawhflsc1rxbmyf3qs67796my"; depends=[flowCore lattice]; }; - impute = derive2 { name="impute"; version="1.56.0"; sha256="08z0pj1dz5iq967nwj67qyka7ir7m5an2ggv7bsrlz3apzfsla33"; depends=[]; }; - intansv = derive2 { name="intansv"; version="1.22.0"; sha256="1gj6sxh84v5g7nriskyg7jx0z3kqmicymv53651cgr66wc86z2lm"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; - interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.20.0"; sha256="1zlxmj8wwn916xf7qkvpapsqg9i53bywn2z3xny3yj6jp9xmibff"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; - interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.20.0"; sha256="04xz3dkwan2s5ic1mwkdfnggm0l41mgqfagx160bcsrpkw6z7ark"; depends=[BiocGenerics shiny]; }; - inveRsion = derive2 { name="inveRsion"; version="1.30.0"; sha256="0qaxl6arlx2zki5gkic52b575ickh7mzwls70xyqj8342hyxhi30"; depends=[haplo_stats]; }; - ipdDb = derive2 { name="ipdDb"; version="1.0.0"; sha256="049hzzj2x7wwd4ybjbq6vrc4kg21fcx7yxj501lyyp1qddvvrmvs"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; - isobar = derive2 { name="isobar"; version="1.28.1"; sha256="0zh6qj9jjwp1wgwg9n47g01xxwdi8janiv3iy89a3jc62mm1ddpc"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; - isomiRs = derive2 { name="isomiRs"; version="1.10.1"; sha256="18fhm2w1j92sj7pw6hhi58slv4sni09mf10s9ihm2xphv10qysym"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics cluster cowplot DEGreport DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors SummarizedExperiment tibble tidyr]; }; - iterClust = derive2 { name="iterClust"; version="1.4.0"; sha256="12nm79j67ls330lnld1wf4xdjxnfi15yjd8x5ibppv9ccsq6vlrn"; depends=[Biobase cluster]; }; - iterativeBMA = derive2 { name="iterativeBMA"; version="1.40.0"; sha256="0x3fk3faslrcc24wrchdy57ip2nq49dr0l5yf99ihr1gnkfzjrsr"; depends=[Biobase BMA leaps]; }; - iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.40.0"; sha256="1k6pivwa69n1ppwvfdr90nlm7lw2kji2p1s6s35dc9463a6qyh7r"; depends=[BMA leaps survival]; }; - iteremoval = derive2 { name="iteremoval"; version="1.2.0"; sha256="0xmx4k6h8ii2mfqik5kkx7gwmhn4br8a7pnqv4bk9dbvphaqknk8"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; }; - ivygapSE = derive2 { name="ivygapSE"; version="1.4.0"; sha256="0r9j2r0n5hw75ylbc8scq070p4kazc4m9vrjcbxvfkyv22qppjr2"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; - joda = derive2 { name="joda"; version="1.30.0"; sha256="1v21j6maydhfxixfa27napp1k59f1jngz7p9hidijmm4nqbg4w60"; depends=[bgmm RBGL]; }; - karyoploteR = derive2 { name="karyoploteR"; version="1.8.8"; sha256="0hfv89383m5l4r3aswgscjl2r35b7k7wlgslj8il41grbzz3a55p"; depends=[bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors]; }; - kebabs = derive2 { name="kebabs"; version="1.16.0"; sha256="1ibxymqpiq85a5zs5wrngkyjqvwb4n5k2jxiics4mqv28pg34023"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; - keggorthology = derive2 { name="keggorthology"; version="2.34.0"; sha256="107wi6mlrz15pgwg7jrlb3q771v0yhxqph5i5c0h6v3yzr47xx15"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; - kimod = derive2 { name="kimod"; version="1.10.0"; sha256="081vanahyk3figp6jc9cjvq9lrn1mchc08wbw79f6k5sind4ic7z"; depends=[Biobase cluster]; }; - kissDE = derive2 { name="kissDE"; version="1.2.0"; sha256="0vqg7gjcj6z0v5ngj3z6zrmh5kdyk7hghj38yv7vp36miiqzrlw6"; depends=[aod Biobase DESeq2 doParallel DSS foreach ggplot2 gplots matrixStats]; }; - lapmix = derive2 { name="lapmix"; version="1.48.0"; sha256="12s3k81bysmmqc6r524jsx9yv0vyd5ppw1xs7myk2y7067355wxc"; depends=[Biobase]; }; - ldblock = derive2 { name="ldblock"; version="1.12.1"; sha256="01lf74pby7si2g3kgc10qzr6lkcbigqcgqs2j3anc38vzxv0zhwv"; depends=[BiocGenerics erma GenomeInfoDb GenomicFiles GO_db Homo_sapiens Matrix Rsamtools snpStats VariantAnnotation]; }; - les = derive2 { name="les"; version="1.32.0"; sha256="0iv4srhkirw2ix0a2bv44byydwxgihy027wahcskamm6dzk0k9lz"; depends=[boot fdrtool gplots RColorBrewer]; }; - levi = derive2 { name="levi"; version="1.0.0"; sha256="177zjvijca57f0hr4wb3zr83is3bgag5yfc07p9azic64ilwfqdb"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 shiny shinydashboard shinyjs testthat xml2]; }; - lfa = derive2 { name="lfa"; version="1.12.0"; sha256="1lvkycg4d7grqj7x5s3bcq2h4936kvd75r029zsa9mxdakc94kld"; depends=[corpcor]; }; - limma = derive2 { name="limma"; version="3.38.3"; sha256="08va8jggmv61wym955mnb1n31mgikrmjys7dl1kp5hp3yia8jg7l"; depends=[]; }; - limmaGUI = derive2 { name="limmaGUI"; version="1.58.0"; sha256="0fjq8qr5f6cv0bx4sfinnjiy0jc3dymlzhfkrxbd0c24fw35m3f4"; depends=[limma R2HTML tkrplot xtable]; }; - lmdme = derive2 { name="lmdme"; version="1.24.0"; sha256="069s419q5ca4py0c5r392kl08pmb6fnm76vsznqkbbl4g1yclyp3"; depends=[limma pls stemHypoxia]; }; - loci2path = derive2 { name="loci2path"; version="1.2.0"; sha256="1aps0yq7wg5gi9nacg5znfa5bf9i8ijf0qv5xn03s4rbzbwxwlfz"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; - logicFS = derive2 { name="logicFS"; version="2.2.0"; sha256="1kvwcm2b66hqlpf693s0cy8sr7sgxqvcdg1czwj7f77hf9ys3x40"; depends=[LogicReg mcbiopi survival]; }; - logitT = derive2 { name="logitT"; version="1.40.0"; sha256="1xmyixzihnv6svxhk76f695fs641p3zwj3k6xk5ds2989p6zkymy"; depends=[affy]; }; - lol = derive2 { name="lol"; version="1.30.0"; sha256="0z78jddb3cv5w26rm3bh27b3qqc2fbf3lv57xj8aq8fvya2w4ma2"; depends=[Matrix penalized]; }; - lpNet = derive2 { name="lpNet"; version="2.14.0"; sha256="1b3xsaq8ibsiz5895q6qqa632wlg08ca5sxm82ppm70fddpy26fd"; depends=[lpSolve nem]; }; - lpsymphony = derive2 { name="lpsymphony"; version="1.10.0"; sha256="0vnsf5x6gvd1k8h89al7r6xbgbxsjbxphr675czzwggz79zbvq7y"; depends=[]; }; - lumi = derive2 { name="lumi"; version="2.34.0"; sha256="1fpmjpgcy5n0hx9whn9m3jhjmciqq0l59nvy5addbq0a4wnjhx8q"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; - mAPKL = derive2 { name="mAPKL"; version="1.12.0"; sha256="1bp8xpcrz7d76lazp72p25rzp3gcmr2z4cyhcgbg678gpsp61lj9"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; - mBPCR = derive2 { name="mBPCR"; version="1.36.0"; sha256="0vsb87518x770li85jdkns1qsabmixsn8mvh96hamr0adcwvgzrz"; depends=[Biobase oligoClasses SNPchip]; }; - mCSEA = derive2 { name="mCSEA"; version="1.2.2"; sha256="0lan3ycvlg2z21wih4dnmiiq2al0jspqbv974pfak57s8h6vznrj"; depends=[fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; - maCorrPlot = derive2 { name="maCorrPlot"; version="1.52.0"; sha256="11gg32sj2iyd3l7hxlqlhgd8adcgsfdz7n5lypsz1d7d3y760f7y"; depends=[lattice]; }; - maPredictDSC = derive2 { name="maPredictDSC"; version="1.20.0"; sha256="00m792cgx3v6gp81axpqf48bdxkl8l2gnl6fvsx3xbsk4akm33p2"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; - maSigPro = derive2 { name="maSigPro"; version="1.54.0"; sha256="15bndkrwafj1vg2ik0s5003dzs65ibyhgz79ya5gry0b5h365qri"; depends=[Biobase MASS mclust venn]; }; - maanova = derive2 { name="maanova"; version="1.52.0"; sha256="1p1g5p2qflcgk24h1ww0nj4nnfas5pyg1caw2bgxrqyb161rl90x"; depends=[Biobase]; }; - macat = derive2 { name="macat"; version="1.56.0"; sha256="11jvvs3w1kiv2lvjwgzcxr5xy3m7c6b56bvhs8kiwf5lkqrqw6kn"; depends=[annotate Biobase]; }; - made4 = derive2 { name="made4"; version="1.56.0"; sha256="05bk877d81jjifj6rgrx0j2fhlsnmy8s093fnpqp7khrjwqh3zhn"; depends=[ade4 gplots RColorBrewer scatterplot3d]; }; - maftools = derive2 { name="maftools"; version="1.8.10"; sha256="0r6m258qmhq6qfylp6hc8bfqaix69w9s3d4xzaaz2n0448q4qf27"; depends=[Biostrings BSgenome cometExactTest ComplexHeatmap cowplot data_table ggplot2 ggrepel gridExtra mclust NMF RColorBrewer rjson survival wordcloud]; }; - maigesPack = derive2 { name="maigesPack"; version="1.46.0"; sha256="07rd63lifw4vmf2cxb7lwmnwpynv39ac0h2dd97dvjwqzj6kq1cs"; depends=[convert graph limma marray]; }; - makecdfenv = derive2 { name="makecdfenv"; version="1.58.0"; sha256="0djhh5kj4ymxjk1qhpx8kcy8cjzx3syx6na7v52aqhys0zssdbip"; depends=[affy affyio Biobase zlibbioc]; }; - manta = derive2 { name="manta"; version="1.28.1"; sha256="0lzwh3yi41hrqm25ili464n1cl22q7v00kgl20b412zfyx4rn7y5"; depends=[caroline edgeR Hmisc]; }; - mapscape = derive2 { name="mapscape"; version="1.6.0"; sha256="148b7g4qiczc215x9nrggjqzjbsd4wxwydjxsfbsmy51db7n4gp2"; depends=[base64enc htmlwidgets jsonlite stringr]; }; - marray = derive2 { name="marray"; version="1.60.0"; sha256="1sh7l3c28x6zhdv99c9x05ii2yxmh9alkazp98kdi4fdb23rlzky"; depends=[limma]; }; - martini = derive2 { name="martini"; version="1.2.0"; sha256="072k0wphk4nl096wvbfrn0v1sgryg74ay6r9jqci7pzmninc0kci"; depends=[igraph Matrix Rcpp RcppEigen Rgin S4Vectors snpStats]; }; - maser = derive2 { name="maser"; version="1.0.0"; sha256="08zfqzbryir2sf5a5bmdy63a9ix983kkn281flfbwm81694wx7pg"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; - maskBAD = derive2 { name="maskBAD"; version="1.26.0"; sha256="0nkc7s219b9vhc3fl01ji94pxls0r8li042k8lrq8jx1g940smh4"; depends=[affy gcrma]; }; - massiR = derive2 { name="massiR"; version="1.18.0"; sha256="1fsic9w4bkkmi177f1f8lk4835cs2y4r5dy5vf71nc89y4jg7h67"; depends=[Biobase cluster diptest gplots]; }; - matchBox = derive2 { name="matchBox"; version="1.24.0"; sha256="0whhbp49imvrl0a4xdmmbz8fz8vv9i19168smm7xq2p7wa1am364"; depends=[]; }; - matter = derive2 { name="matter"; version="1.8.3"; sha256="03hsgl0k48j458aa20s4xxrpslypllg74qf6yr9irx9h939hszwm"; depends=[biglm BiocGenerics digest irlba]; }; - mcaGUI = derive2 { name="mcaGUI"; version="1.30.0"; sha256="0id5zlpk8zdim8gmmh61dabirg52kmbi63dx316838idk4i06a5h"; depends=[bpca foreign gWidgets gWidgetsRGtk2 lattice MASS OTUbase proto vegan]; }; - mdgsa = derive2 { name="mdgsa"; version="1.14.0"; sha256="01yh036hy3jn1q76bz2whfdf2qjs5xra7570rf25fff824cbszdk"; depends=[AnnotationDbi cluster DBI GO_db KEGG_db Matrix]; }; - mdp = derive2 { name="mdp"; version="1.2.1"; sha256="1rmkzjd2f7f1dnla8rlywhwih5lpi742br1gsrrl5i61lgy61fbl"; depends=[ggplot2 gridExtra]; }; - mdqc = derive2 { name="mdqc"; version="1.44.0"; sha256="0w4455xqkwwz8bhac36sxkqziq9pacp8n81zc3b1wwcwf95m2r6q"; depends=[cluster MASS]; }; - meshes = derive2 { name="meshes"; version="1.8.0"; sha256="0lc0mmvmrfzirqc0ydhzwdpq7d6rb8ffi8ka52qs6wc6nfqb6qg8"; depends=[AnnotationDbi DOSE enrichplot GOSemSim MeSH_db rvcheck]; }; - meshr = derive2 { name="meshr"; version="1.18.0"; sha256="12rwfqjpa9bzgrm3yqfz7h8v22icps8dr709lmp7k1jx9jbzp3gs"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db RSQLite S4Vectors]; }; - messina = derive2 { name="messina"; version="1.18.0"; sha256="1dhl6l5ids2ffsfbc9jk36ihrpsd161w9c1j93jvdvpa6130jl6f"; depends=[foreach ggplot2 plyr Rcpp survival]; }; - metaArray = derive2 { name="metaArray"; version="1.60.0"; sha256="049xwhycw2czzshvy5rc4plngaylwrj3ilk7dzynksn7av6sz4zd"; depends=[Biobase MergeMaid]; }; - metaCCA = derive2 { name="metaCCA"; version="1.10.0"; sha256="1h3xnrnlpbrjvrjpifm6i4kzyfgc2a0gnzpxya9lj105m9svpvca"; depends=[]; }; - metaMS = derive2 { name="metaMS"; version="1.18.1"; sha256="0ygci9hny7p90wf6inzw8qgbm8vl82d2n2wvcac5vdh8rsc4rdcp"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; - metaSeq = derive2 { name="metaSeq"; version="1.22.1"; sha256="00jwcgcx250v9glqxc1d0cvydn2jqzxxq62jmwskv87av68ppqbs"; depends=[NOISeq Rcpp snow]; }; - metabomxtr = derive2 { name="metabomxtr"; version="1.16.1"; sha256="1nz1higya3i7lbmqgxv5fa4nxwpm7b2fvsa69x52b36i0z70y7lc"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; - metagene = derive2 { name="metagene"; version="2.14.0"; sha256="09krnp862jz8mgjyp6v5ynvsrl4asfvzsvi21rj8af5b0ywkwvwg"; depends=[BiocParallel data_table DBChIP EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats muStat purrr R6 Rsamtools rtracklayer stringr]; }; - metagenomeFeatures = derive2 { name="metagenomeFeatures"; version="2.2.3"; sha256="0dirj9xsn13jz572j0z37997s3nhgb3l1gqm67giarbp1h0nw20l"; depends=[ape Biobase Biostrings dbplyr DECIPHER dplyr lattice lazyeval magrittr RSQLite S4Vectors stringr]; }; - metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.24.1"; sha256="0zsb9vilmkvmx7vhw4074qgkxi5xd0kihzx2q5bi7l2zjd152y78"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; }; - metahdep = derive2 { name="metahdep"; version="1.40.0"; sha256="02xw6pb6688hhgq3213s55sb73qmd6xjfaqk7bz4ci7m4ilf6c2k"; depends=[]; }; - metaseqR = derive2 { name="metaseqR"; version="1.22.1"; sha256="0nrvm55jx25mwrdg9p52mlbvvcqcvkbg2z1i9g5fhb0c7llcrldx"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; }; - metavizr = derive2 { name="metavizr"; version="1.6.2"; sha256="18hcd11i4n6l8kf1i0a8zlx2bzr3964lijgbwvkg8bghy288n4jm"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; - methInheritSim = derive2 { name="methInheritSim"; version="1.4.1"; sha256="0cshckvhrvlq9wgcjk3z2bi1qfq1my947rwvdma5la8ydf3x1i5w"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; - methVisual = derive2 { name="methVisual"; version="1.34.0"; sha256="09ss0s5z950m6v2y037v8qwsp238w73302ls1xh9ps8gkz05a800"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; }; - methimpute = derive2 { name="methimpute"; version="1.4.1"; sha256="1xcparys2ifv2y5rp8ih558l8apnw5b3mjnkkc29szf38mzk9a1r"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; - methyAnalysis = derive2 { name="methyAnalysis"; version="1.24.0"; sha256="0afgaf3xl2dnpl86agbx44fiq4i5i96535p3hd9y845xdq5ymvnp"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; }; - methylGSA = derive2 { name="methylGSA"; version="1.0.4"; sha256="0zkq3cnir2n01syc8122wy8yznlal60lhi9a97f1yayc95mddl66"; depends=[AnnotationDbi clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b2_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg stringr]; }; - methylInheritance = derive2 { name="methylInheritance"; version="1.6.1"; sha256="0n11jkka37aqmirn73hl8kabilb220i1pv10i62jzq623sqpdsz9"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; - methylKit = derive2 { name="methylKit"; version="1.8.1"; sha256="1zcfwy7i10aqgnf7r0c41hakb5aai3s3n9y8pc6a98vimz51ly2z"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; - methylMnM = derive2 { name="methylMnM"; version="1.20.0"; sha256="0sd3vj58yfscngpcl9hys2nys3siq1h2ask5r8j6jx6yz3qs91xd"; depends=[edgeR statmod]; }; - methylPipe = derive2 { name="methylPipe"; version="1.16.0"; sha256="1qrvf0kf1948v2bhkxv979p6cr8mknmqkb04hz30bm8fqpmn1wfw"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; - methylumi = derive2 { name="methylumi"; version="2.28.0"; sha256="14p2qi18cprfvb2gxng1vm48c7zwh23h88q9qjgipj9xl5axsgw2"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; - methyvim = derive2 { name="methyvim"; version="1.4.0"; sha256="1scybf1hdzyvjmcbfbqpbwph38alp594lj3ggxcdgfxvjapq3rsb"; depends=[BiocGenerics BiocParallel bumphunter cluster doFuture dplyr future GenomeInfoDb ggplot2 ggsci gridExtra gtools IRanges limma minfi S4Vectors SummarizedExperiment superheat tmle]; }; - mfa = derive2 { name="mfa"; version="1.4.1"; sha256="0khilki6kp63lij5nfcl36j161aqndr385p15fnmvg38qql88px7"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; - mgsa = derive2 { name="mgsa"; version="1.30.0"; sha256="0b30hlqyx8aw8a9naln2m5k8lgkr9f9fgv1mwnww5xiwqdnbqfcw"; depends=[gplots]; }; - miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.6.0"; sha256="0gb7vg35wff0kckb6dqkggvshdy43q04f07niiqamnl71h59wjh7"; depends=[]; }; - miRLAB = derive2 { name="miRLAB"; version="1.12.0"; sha256="0vpvd93zrz4ihcinpwppc954585vjafmcpj1rpamqkyi2giyxldm"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots heatmap_plus Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl Roleswitch stringr SummarizedExperiment TCGAbiolinks]; }; - miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.10.0"; sha256="0wkkgqki7sv92adwzxay6xjyfx921ll8yh6aw2yp0mdgk9021zr8"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; - miRNApath = derive2 { name="miRNApath"; version="1.42.0"; sha256="1hrnnvp3y2q8ldmlq2pdyd3dpkqpyrhhgzqms3mc7djnv6ybv3cd"; depends=[]; }; - miRNAtap = derive2 { name="miRNAtap"; version="1.16.0"; sha256="1iy4gks0c0alg5bl1l40fdja6wffm0hjv40xvny9s1g036zmqca6"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; - miRSM = derive2 { name="miRSM"; version="1.0.0"; sha256="09z2ca1qpf2m3s5cc59y4xzcixlbl847c17lx1kmrakabqpsxy8i"; depends=[BiBitR BicARE biclust Biobase dynamicTreeCut fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MCL miRsponge NMF PMA Rcpp rqubic runibic s4vd SummarizedExperiment WGCNA]; }; - miRcomp = derive2 { name="miRcomp"; version="1.12.0"; sha256="17b6bq70d6ly09vma5mdlk54620jdxw6k4bwdyxgghyk7kwmd753"; depends=[Biobase KernSmooth miRcompData]; }; - miRmine = derive2 { name="miRmine"; version="1.4.0"; sha256="0zfdm5d6ifkq55v38xcjwzq19ifh6jgbg1pjp298mn15yjsjzfj1"; depends=[SummarizedExperiment]; }; - miRsponge = derive2 { name="miRsponge"; version="1.8.2"; sha256="0cpbhbjsb7sr3rjmc4cjn18j2rycma941qrwcjz8gyd4kgafd78f"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA survival varhandle]; }; - microRNA = derive2 { name="microRNA"; version="1.40.0"; sha256="1asrjljh4bxgzvbgnp72sqyqv13kvzbfdn3jy01v3l98dppjnwsf"; depends=[Biostrings]; }; - microbiome = derive2 { name="microbiome"; version="1.4.2"; sha256="0amla1m69axhlslbg1pbvl61qyxb6qjpdfd5g2j8b116h8xrmyab"; depends=[dplyr ggplot2 phyloseq reshape2 tidyr vegan]; }; - mimager = derive2 { name="mimager"; version="1.6.0"; sha256="097fv7wfj0wj0chijcl5v52lf35pc48va1ddsq6qii5xzi626cpd"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; - minet = derive2 { name="minet"; version="3.40.0"; sha256="0hb1k3p750qykmqjz59yjak5h8vmnln8zcp2dffjnqvwgn78i23w"; depends=[infotheo]; }; - minfi = derive2 { name="minfi"; version="1.28.4"; sha256="1sjwwqb0syngvj75saaky9y06hbxsawhhcmfvavzkhicxipafv7r"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; - mirIntegrator = derive2 { name="mirIntegrator"; version="1.12.0"; sha256="1vgl2kz4jahrw885gib7yaxwliij1ric9mmsad8v4zravw7d9knj"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; - missMethyl = derive2 { name="missMethyl"; version="1.16.0"; sha256="0axssdkyvdfpq7r47sckbbp7w8wa06j1ncskcn2w9f95nl1dbya5"; depends=[AnnotationDbi BiasedUrn GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest limma methylumi minfi org_Hs_eg_db ruv statmod stringr]; }; - missRows = derive2 { name="missRows"; version="1.2.0"; sha256="0fgw36358z0lc0ppkpy49vw1p2k2w3ji01apff8gpkfb310zipwc"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; - mitoODE = derive2 { name="mitoODE"; version="1.20.1"; sha256="17cppvvvbpa4k62wrih3q61mrkc3145d5macq0sp6vh2vag61xdm"; depends=[KernSmooth MASS minpack_lm mitoODEdata]; }; - mixOmics = derive2 { name="mixOmics"; version="6.6.2"; sha256="00mq3ikxnx8msgvciqjzis5n83klbzkp5nlk47hl41zksxnyknwm"; depends=[corpcor dplyr ellipse ggplot2 gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; - mogsa = derive2 { name="mogsa"; version="1.16.0"; sha256="14rl7md4bdpb24cxj5pmr196dy0amih8l4611kgwbrvdm9k13d3s"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; - monocle = derive2 { name="monocle"; version="2.10.1"; sha256="0shwkgqs93j2l5h36yyvb1lf724107cfjrmzp5fxfj1lqc0y61lf"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree densityClust dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; - mosaics = derive2 { name="mosaics"; version="2.20.0"; sha256="1536y2fizmi7jafq7bhbv8bzpf5b97dfskpg9a7v4c9xv6isagnx"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; - motifRG = derive2 { name="motifRG"; version="1.26.0"; sha256="1wxww6i0jgyapqclcwy0zzf9kqjvrvylr89z7yhg1izi7jnw2fka"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 IRanges seqLogo XVector]; }; - motifStack = derive2 { name="motifStack"; version="1.26.0"; sha256="1c4w39ilc4ca4wgi1b6iypadkbxvqjw7k2br0d7q03niw9qjkhxf"; depends=[ade4 Biostrings grImport htmlwidgets MotIV scales XML]; }; - motifbreakR = derive2 { name="motifbreakR"; version="1.12.0"; sha256="191w8nzjm1lkgbzlhixnfvpgadq2mlhmwk7ai8xaadmxckrf494a"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr TFMPvalue VariantAnnotation]; }; - motifcounter = derive2 { name="motifcounter"; version="1.6.0"; sha256="04i8s6r26kir9fcqbvy1wfxrav5imwj4r0sqvsf4vq2jxkwb4brr"; depends=[Biostrings]; }; - motifmatchr = derive2 { name="motifmatchr"; version="1.4.0"; sha256="1s65gr15iil1y8sa7wggrj5sb0mgw6vgs2qrmk1xka9zqjx957kv"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; - mpra = derive2 { name="mpra"; version="1.4.1"; sha256="0wwn5cix0npk8lhsmk9dzagnfrqcn9x22wzgf5kq3xk4gwaraqdw"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; - msPurity = derive2 { name="msPurity"; version="1.8.1"; sha256="00v9bgwjkgkwkpf5yq13snncayn76iyp0k6r7lbq1lhf5p4cxw6m"; depends=[DBI doSNOW fastcluster foreach ggplot2 mzR plyr Rcpp reshape2 RSQLite stringr]; }; - msa = derive2 { name="msa"; version="1.14.0"; sha256="1g0ny0hjnzwqh9kbp6n770vfdvxsl95vhiydjqasma2hz205plf9"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; - msgbsR = derive2 { name="msgbsR"; version="1.6.1"; sha256="0q7hz3ca4x0nagk9f65vni3qn5z08irmxc5344rgn9mscafchfbv"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; - msmsEDA = derive2 { name="msmsEDA"; version="1.20.1"; sha256="1jrlxgzh3kdr9nhr9qd7hi5ahg9r2589drhq4klkcrwvfy013j7b"; depends=[gplots MASS MSnbase RColorBrewer]; }; - msmsTests = derive2 { name="msmsTests"; version="1.20.1"; sha256="08w3hmmmhxx5dvki5sfgxrhdqfy1xdxcbnpy4nvszhgmyc18zjzp"; depends=[edgeR msmsEDA MSnbase qvalue]; }; - multiClust = derive2 { name="multiClust"; version="1.12.0"; sha256="0ddk1sl9zsc4dgrxasnqa2h341blirpwzygl89wh2k4ga0wsmw6q"; depends=[amap cluster ctc dendextend mclust survival]; }; - multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.0.0"; sha256="0aixi21zmj2lc54cmkqc9k596nll01nyxhpkkzx40lv7jihw6p1c"; depends=[BiocParallel BLMA data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare metap pbapply pheatmap qqman]; }; - multiMiR = derive2 { name="multiMiR"; version="1.4.0"; sha256="1mip48rcqk47sj5sdqi2rxcwsd6l6v3nssnnkx41mpx8amn3cigb"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; - multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.6.0"; sha256="0h7spx39c079mzpbnbg4fv7bfnrdqz95101zxd4cdsffjk5zrly8"; depends=[doParallel foreach SummarizedExperiment]; }; - multiscan = derive2 { name="multiscan"; version="1.42.0"; sha256="1h5b55j0m4znp9gpzqdv974vvxhlbskxy9m474g8y72q0zbri4gk"; depends=[Biobase]; }; - multtest = derive2 { name="multtest"; version="2.38.0"; sha256="0lq62jw81hz9k840969n5byj57pwd0jqga3hqvhb6abb3g10yz7k"; depends=[Biobase BiocGenerics MASS survival]; }; - muscle = derive2 { name="muscle"; version="3.24.0"; sha256="1v0n6ncq467kpfli498gddz0r6ilkhjfw0q9srl1gcknz5y2frsw"; depends=[Biostrings]; }; - mygene = derive2 { name="mygene"; version="1.18.0"; sha256="03knrfbqm9hr30l3s58jkqyl6sl83p1vf4zyahr1ld0qrw81pvx7"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; - myvariant = derive2 { name="myvariant"; version="1.12.0"; sha256="1vsp8m6rwyk09i0rg5j8w29vgn5hzz7fh8gc2fbjbg3icls26gn8"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; - mzID = derive2 { name="mzID"; version="1.20.1"; sha256="15yd4bdxprw3kg7zj2k652y3yr3si781iw28jqvnkm0gsc23rd0c"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; - mzR = derive2 { name="mzR"; version="2.16.2"; sha256="19fn58zl59kd0hsjjc6y975y9187nfls0028a4k3v0s9wfg5b3vn"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib zlibbioc]; }; - ncdfFlow = derive2 { name="ncdfFlow"; version="2.28.1"; sha256="1nabfa8nz6plw8w2xfla0xffqmxyk699dbv9615cazhf6vl6289f"; depends=[BH Biobase BiocGenerics flowCore flowViz Rcpp RcppArmadillo Rhdf5lib zlibbioc]; }; - ndexr = derive2 { name="ndexr"; version="1.4.1"; sha256="067x2sj3pnq3hrxjpw4y4qp9gimgymxik9zdqjkirix77h817682"; depends=[httr igraph jsonlite plyr tidyr]; }; - nem = derive2 { name="nem"; version="2.56.0"; sha256="02j5rm0h9bjghgba244k0acshbnhrr38ghvx6cmf8za8fw19k3v2"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; }; - netReg = derive2 { name="netReg"; version="1.6.0"; sha256="01qxq7zlbmvh0mazw069fm6bjw0ks90baj8y5i0jc7m101dsm2qi"; depends=[Rcpp RcppArmadillo]; }; - netSmooth = derive2 { name="netSmooth"; version="1.2.0"; sha256="1cz3rca9ig9jl8ddcadbij129v5rpb86ncfrdmfj4m9qy0krlyac"; depends=[cluster clusterExperiment data_table entropy Matrix scater SingleCellExperiment SummarizedExperiment]; }; - netbenchmark = derive2 { name="netbenchmark"; version="1.14.0"; sha256="1gc8dnma4pr1j9wq422x8xh89mvb15kyvjvv86fhhshvdisihngw"; depends=[c3net corpcor fdrtool GeneNet GENIE3 grndata Matrix minet pracma Rcpp]; }; - netbiov = derive2 { name="netbiov"; version="1.16.0"; sha256="0zg4wkf4z6yi84sdp4h8dg8cq5sm6m04abg15hm68y27vw42prs2"; depends=[igraph]; }; - nethet = derive2 { name="nethet"; version="1.14.0"; sha256="1xp08ad4lsmrjgvqydr85k4y0b57hcaxicndh4hz4plqswzl7qpf"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; }; - netprioR = derive2 { name="netprioR"; version="1.8.1"; sha256="1phdaklcwhv1rv94dvz4mcwi5f1b3gya7bwv7489hsx7pa149sac"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; - netresponse = derive2 { name="netresponse"; version="1.42.0"; sha256="16hgcjzvbsx1lj2aq8jkam926ykb06im06rr62z705x6hna8k4g0"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz]; }; - networkBMA = derive2 { name="networkBMA"; version="2.22.0"; sha256="12pl1hl1r2j3kvbr061xzzv5fmkh1g60j5ihvzi14gy8chvjk7wk"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; }; - nnNorm = derive2 { name="nnNorm"; version="2.46.0"; sha256="0fslid2ywqbx4d3c2gvhhsmkkkidgjnlr8jsd61qralcdln494wv"; depends=[marray nnet]; }; - nondetects = derive2 { name="nondetects"; version="2.12.0"; sha256="1wsckq31y6cxlgyg579zh6yk1sa1s0lczkvx29dbvy11hjnsgkm6"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; - normalize450K = derive2 { name="normalize450K"; version="1.10.0"; sha256="0ab9g0k0y8lzqx8vvfwxy8yjmal4lgxf64fnz0923jss98czvk21"; depends=[Biobase illuminaio quadprog]; }; - normr = derive2 { name="normr"; version="1.8.0"; sha256="1yj9nnfzj522yr5nw0sm9l6cvk21w4vpxn0bayggs2wx5g03pbsj"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; - npGSEA = derive2 { name="npGSEA"; version="1.18.0"; sha256="199n898qn6799p6zk46vlz192zj0z10f9q0xfc129ickfa7zk6gf"; depends=[Biobase BiocGenerics GSEABase]; }; - nuCpos = derive2 { name="nuCpos"; version="1.0.1"; sha256="0waac65n10izn8a6r2rlgi1xwjdc1yxa0pwlnriwkzdg9hpszbdd"; depends=[]; }; - nucleR = derive2 { name="nucleR"; version="2.14.0"; sha256="19y2ars61gbzglqvfzj2xq08iw34vnjm3fzn4dx67r0ivnxncs34"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; - nucleoSim = derive2 { name="nucleoSim"; version="1.10.0"; sha256="09mls6rv9qw9w1g3avgj57pi2avg4pnlbcbg29da0szz0dbbb7yn"; depends=[IRanges S4Vectors]; }; - occugene = derive2 { name="occugene"; version="1.42.0"; sha256="0sqmnr571rx18mh9m9ivjp79bqn6dydzhh3h4xc7xxwqwwp0l4fa"; depends=[]; }; - odseq = derive2 { name="odseq"; version="1.10.0"; sha256="0936n8qzxcaxlqwpzh3dc2gnzh7q5cyrk4cif3vxb4hrlix8b1bv"; depends=[kebabs mclust msa]; }; - oligo = derive2 { name="oligo"; version="1.46.0"; sha256="1j9p22chnb09fp26xnlx5zmrxccg0q56ywgxfvbmm0s2jnr02nam"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; - oligoClasses = derive2 { name="oligoClasses"; version="1.44.0"; sha256="03kdxgrznx204y7pma1ca4bjgrhhhwfz2ia9radgkl70m447hz13"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; - omicRexposome = derive2 { name="omicRexposome"; version="1.4.1"; sha256="0jfyin051mwif6sxng7y51pc4gc1wxshfpy09zcj33j9cx2yabcw"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; - omicade4 = derive2 { name="omicade4"; version="1.22.0"; sha256="1bwfbzkq7p9h1njgaj15hk69cw9649kq5hwf2k8jf3spnbirp114"; depends=[ade4 made4]; }; - omicplotR = derive2 { name="omicplotR"; version="1.2.1"; sha256="1dj2n3y6rhrhiy36hpmmy468zbjcibq0f36lymz217iklh93m0lh"; depends=[ALDEx2 compositions knitr matrixStats rmarkdown shiny vegan zCompositions]; }; - omicsPrint = derive2 { name="omicsPrint"; version="1.2.1"; sha256="0ri8is6d9vl44l1l8hizxa7ysc0inq81kqjjdxr8x09q4xp2hyw0"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; - oncomix = derive2 { name="oncomix"; version="1.4.0"; sha256="00pwd0nbbdlv35p85h5kqybvvzz2833qx2jgprffg2bhmxvaky8w"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; - oneSENSE = derive2 { name="oneSENSE"; version="1.4.1"; sha256="0hipmgwy8wy7i8mc35vdkgfbqz6g2wcqczl78x9i41av4dacpqz1"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; - onlineFDR = derive2 { name="onlineFDR"; version="1.0.0"; sha256="1738wy4px32jzinj9311hvng887ys61dqqs3m3zi5cqkpwcs19hd"; depends=[]; }; - ontoProc = derive2 { name="ontoProc"; version="1.4.0"; sha256="08sgf142b8l4gdsap44b75jcxvwlcz19saqjrw9sg0307h509n77"; depends=[AnnotationDbi Biobase ontologyIndex S4Vectors shiny]; }; - openCyto = derive2 { name="openCyto"; version="1.20.2"; sha256="0fa39bpi26civ7dabxf7py6lydmkhss5gff6ykrbmwp85h9d2nsh"; depends=[Biobase BiocGenerics clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; - openPrimeR = derive2 { name="openPrimeR"; version="1.4.1"; sha256="0cmixmj1mnalr89c32ih5hf4v73qf4x73hzvbiw0mnz8niizaqgz"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr tinytex uniqtag XML]; }; - openPrimeRui = derive2 { name="openPrimeRui"; version="1.4.1"; sha256="163a8frs637yvm6vqhi7sxashkbdc61m8mb5lc6n0i98zicmaj4p"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; - oposSOM = derive2 { name="oposSOM"; version="2.0.0"; sha256="190sg040nxjja0phmw9k81s139756qsnk1pac3cby21ml6hwbr0j"; depends=[ape Biobase biomaRt fastICA fdrtool igraph pixmap Rcpp RcppParallel scatterplot3d tsne]; }; - oppar = derive2 { name="oppar"; version="1.10.0"; sha256="012ypy3z2dgm6ddmbrq3vyyf5yk9ac18gs733s70jv61z2bd1rlw"; depends=[Biobase GSEABase GSVA]; }; - pRoloc = derive2 { name="pRoloc"; version="1.22.2"; sha256="14psqkyiwghv51irngrc1r0h47dh8cjz4z1b9x6nas3a1wzbicc2"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; - pRolocGUI = derive2 { name="pRolocGUI"; version="1.16.0"; sha256="13z6zd7m7hsjvm52lgy9v8ypkr6gs190c26qs0yzq7s4vfq48db2"; depends=[Biobase dplyr DT ggplot2 MSnbase pRoloc scales shiny]; }; - paircompviz = derive2 { name="paircompviz"; version="1.20.0"; sha256="1iraq8n5q24zz3xdv15wiyhd5avz0yr6hh1mzygypp8bmhkgcixv"; depends=[Rgraphviz]; }; - pandaR = derive2 { name="pandaR"; version="1.14.0"; sha256="0jm5xxxynrh08l0iz0wj7jl120a6vsglppryjhl4mgv7cs5pdx9w"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; - panelcn_mops = derive2 { name="panelcn.mops"; version="1.4.0"; sha256="1ib6v4zkgj7qc5ncnjgsx0rwb7awbisd64p7zxah175zds33gxph"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - panp = derive2 { name="panp"; version="1.52.0"; sha256="1vv7i3zykv48s0v4nvxaziixkkdl660166cg9fgvbxb8689c2cw7"; depends=[affy Biobase]; }; - parglms = derive2 { name="parglms"; version="1.14.0"; sha256="0mzd1x8xj6sjjm98dahip663zq3k3bm9jn2j60hsyvr18win2bkx"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; - parody = derive2 { name="parody"; version="1.40.0"; sha256="14rzpmmcdq9j19ydb9qksga6l06zdnb29qn13wjxlbn9l7mbfzy4"; depends=[]; }; - pathRender = derive2 { name="pathRender"; version="1.50.0"; sha256="17q2vs878nmjs1k2f11l66wmkjz8zxy9wbhsyg8aal83yzr65hkc"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; - pathVar = derive2 { name="pathVar"; version="1.12.0"; sha256="09ncdyamlhs24yyg7fnb77vchqxpxh6asmj32pxhpvkkkgq106p4"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; - pathifier = derive2 { name="pathifier"; version="1.20.0"; sha256="064q5nbxgyz4hx6h4f92w7vyd77pndmxadwa8cw9y5qzh9g29a5m"; depends=[princurve R_oo]; }; - pathprint = derive2 { name="pathprint"; version="1.12.0"; sha256="06lv35nx0d098idjnlcr5bziilwnpapbbcsdfrwglcibgqis9hzh"; depends=[]; }; - pathview = derive2 { name="pathview"; version="1.22.3"; sha256="1dw87ldd3awc8br61012iaifznby5qq3i8v333blqspfb4mnmjyy"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; - paxtoolsr = derive2 { name="paxtoolsr"; version="1.16.0"; sha256="0sa680x51kcsbmlrb54z8m1qn1pjyzx7k26pni17mfdzaw1q9jki"; depends=[httr igraph jsonlite plyr R_utils readr rJava rjson XML]; }; - pcaExplorer = derive2 { name="pcaExplorer"; version="2.8.1"; sha256="1af9yf4nnsn3wb93zb0agn2vr04ianhm85326fl6qm51pmjljswh"; depends=[AnnotationDbi biomaRt d3heatmap DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats IRanges knitr limma NMF pheatmap plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; - pcaGoPromoter = derive2 { name="pcaGoPromoter"; version="1.26.0"; sha256="0rdj9043zdvfh2gwas13i6787kw01m1cr998prgf12n9l107v68s"; depends=[AnnotationDbi Biostrings ellipse]; }; - pcaMethods = derive2 { name="pcaMethods"; version="1.74.0"; sha256="0ik82s9bsdj4a1mmv0a3k6yisa92mxx7maf3dvip1r8gqlm3dyng"; depends=[Biobase BiocGenerics MASS Rcpp]; }; - pcot2 = derive2 { name="pcot2"; version="1.50.0"; sha256="0rj3wd9a917p20kr28cc8si7yjqdh9ddc3n58aih7f96v6qxzq4i"; depends=[amap Biobase]; }; - pcxn = derive2 { name="pcxn"; version="2.4.0"; sha256="0a4hs1rc3p3lx9r188fgfhly60l570qna5ydmkixci5pjvnijv4b"; depends=[pcxnData pheatmap]; }; - pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.46.0"; sha256="1fwkfyazqq9i51fq965xvxqmidmnzg9xxfk74abfaz8y0w4jamak"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pepStat = derive2 { name="pepStat"; version="1.16.0"; sha256="1msy1wcvp1d2sdddygnqkgzgldgpb6481wj0q0qvb8f2g47lghb7"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; - pepXMLTab = derive2 { name="pepXMLTab"; version="1.16.1"; sha256="03szrw113d90aigy1hr6ylxwc3ccqxinkznfxb3nrw1fzipqz6c4"; depends=[XML]; }; - perturbatr = derive2 { name="perturbatr"; version="1.2.1"; sha256="17dbgj2g4c2bzi3sljh1zsx6azfb02hs3fiha6k01x92fwi83vik"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; }; - pgca = derive2 { name="pgca"; version="1.6.1"; sha256="1j55i52lz6k6bmvxw8vvbynmka43bcd857rl2dc5li5h3c04ympg"; depends=[]; }; - phantasus = derive2 { name="phantasus"; version="1.2.1"; sha256="0nd4zfazkbny94s7jnvj8flnxdvhlv4878w0hklf0fnsyzgc9am9"; depends=[assertthat Biobase ccaPP fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix Matrix_utils opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; - phenoTest = derive2 { name="phenoTest"; version="1.30.0"; sha256="0m9ginyg2jda48ihkvalzs89xpn3bshnyli26s0mb91hhdjcn55c"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach HTSanalyzeR limma mgcv SNPchip survival xtable]; }; - phenopath = derive2 { name="phenopath"; version="1.6.7"; sha256="1bx7v90r180kb8rybhlh26zmq7n3110z7xqyy3cczzp6jrlwycr8"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; - philr = derive2 { name="philr"; version="1.8.1"; sha256="1rdgz4x54m2wlqrhr4nn26q28gzmlivsppzjj8h8g6h1gy7iqsj5"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; - phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.6.0"; sha256="186580zsbbvjz1nck1nrnp81yfyll0rzpbfij127h26ghq49lccc"; depends=[matrixStats plyr]; }; - phyloseq = derive2 { name="phyloseq"; version="1.26.1"; sha256="13ap1jj6rh82f5x6x2cb29c6p3q3rfg86i0dzmj2f0lvsnhr9spw"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; - piano = derive2 { name="piano"; version="1.22.0"; sha256="0fkimnbgmsh3x1r138855glml876al9fbzzz03xw5cybh0rk1ghx"; depends=[Biobase BiocGenerics fgsea gplots igraph marray relations]; }; - pickgene = derive2 { name="pickgene"; version="1.54.0"; sha256="0lsyh1hlpnn7vxqh3ga69qs72wlsrn8hxnzvlv03ga9124kfmnr9"; depends=[MASS]; }; - pint = derive2 { name="pint"; version="1.32.0"; sha256="0ppb7hghv0152qs6zac4i69r0sjckl9hyw8skbb0ksqv785yxpxh"; depends=[dmt Matrix mvtnorm]; }; - pkgDepTools = derive2 { name="pkgDepTools"; version="1.48.0"; sha256="0bsrr3jya1nn694znbsq3zi4h099ak1jsak9fyyccd3icmcmk2x2"; depends=[graph RBGL]; }; - plateCore = derive2 { name="plateCore"; version="1.40.1"; sha256="15ffs6j5p8dfs75hc21rp3ngcrm3265h5a28vzax28p3850c3dy7"; depends=[Biobase flowCore flowStats flowViz lattice latticeExtra MASS robustbase]; }; - plethy = derive2 { name="plethy"; version="1.20.0"; sha256="1018bn55hppwrvj6i5yyzy7fscy1w5v616smpghmplbbycxv3gpi"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; - plgem = derive2 { name="plgem"; version="1.54.1"; sha256="1330635db3p8xm5y8fwrk1l37r6bgypsq70s3rx954i775zp6szg"; depends=[Biobase MASS]; }; - plier = derive2 { name="plier"; version="1.52.0"; sha256="1xg9c232z3vlaa356g1c7b4ysx2bkck5ywb57kim9d5bgbvbk83p"; depends=[affy Biobase]; }; - plotGrouper = derive2 { name="plotGrouper"; version="1.0.1"; sha256="0cshh7dm559w5bmlly293vzndbzq16vkfml3siy8g8w480i0nfxj"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; - plrs = derive2 { name="plrs"; version="1.22.0"; sha256="1xr6z9fdbdj8qyjlr1fw2mx30iqz1bcxcqs7snarc34qdzr088m5"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; }; - plw = derive2 { name="plw"; version="1.42.0"; sha256="1kbn1hhqnf2cmqxjvq4whaj4h7i4v7cbcybcspafy4wvmysjsjvd"; depends=[affy MASS]; }; - plyranges = derive2 { name="plyranges"; version="1.2.0"; sha256="12cc8pnlq1rq01dwia0994chflm184mp2yb983lz973fp0kpbhd2"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyr tidyselect]; }; - pmm = derive2 { name="pmm"; version="1.14.0"; sha256="1ld7bcw6vphm48k8sy07j3j02pxfz6wiwqbz94jblc93s121b3z7"; depends=[lme4]; }; - podkat = derive2 { name="podkat"; version="1.14.0"; sha256="0df21vdia2zl70niajwqfswbicwb2agarak7dyd7arp29xz9ivvf"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; }; - pogos = derive2 { name="pogos"; version="1.2.1"; sha256="1y0v5r3f75qy67pz96siahxi0xdrilqz04v9qjl1ry866nfzjlkg"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; - polyester = derive2 { name="polyester"; version="1.18.0"; sha256="0acwamzwhqbavv0pxah20230mlanncc71lwbbxwki948j1qvg3rp"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; - powerTCR = derive2 { name="powerTCR"; version="1.2.0"; sha256="16x8kzidv6d2zm61jw47dgr047ijfkm18xddkk70qxgkrqc0gdpa"; depends=[cubature doParallel evmix foreach magrittr purrr tcR truncdist vegan VGAM]; }; - ppiStats = derive2 { name="ppiStats"; version="1.48.0"; sha256="1aclxj5y32rca97qv5gqfgsq2aly35gs12jxbvwikwbw6hwvi6pn"; depends=[Biobase Category graph lattice ppiData RColorBrewer ScISI]; }; - pqsfinder = derive2 { name="pqsfinder"; version="1.10.1"; sha256="061105p51shc8ipwrrjflaxdqsyna3hi1ivk1yx5878msvv9pkkx"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; - prada = derive2 { name="prada"; version="1.58.1"; sha256="0hasynlsbyvircf3njss8kvijkmrc0h7i5cch9x1c7zlsvz9ai6s"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; }; - prebs = derive2 { name="prebs"; version="1.22.1"; sha256="0b9x855sqrpiz1rdkl1hrflsg0x6fbdcakkh7602zf14fbbdvdyd"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; - predictionet = derive2 { name="predictionet"; version="1.28.0"; sha256="0hhxdvc30pdrpc96i4jvdn4q8gycdlk6hi9p8xdgmfin6pp375rk"; depends=[catnet igraph MASS penalized RBGL]; }; - preprocessCore = derive2 { name="preprocessCore"; version="1.44.0"; sha256="0ijyjqi8mxxf350dhvgp36swwww5ag7ac9a6r6ymihc5syjr4w4j"; depends=[]; }; - primirTSS = derive2 { name="primirTSS"; version="1.0.1"; sha256="05qi4dhazxfgqr5hzcbbbnlzh4ffqqz266bdxgwpmmi9ri3jw7gc"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; - proBAMr = derive2 { name="proBAMr"; version="1.16.1"; sha256="0bsg3g0vqmv5xqn98z9bfj6hjpcfs6zzpaiiih8y5yq8wdbsi3np"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; - proFIA = derive2 { name="proFIA"; version="1.8.1"; sha256="1y9d57nrd5zbdnis0wqzk6k1p74f2i8qidjn3rl5xydpvnbqdfh5"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; - procoil = derive2 { name="procoil"; version="2.10.0"; sha256="0bv9kq1jsviyxvnclsc47lfjpxwlvsk479bk65zg0qbi397a3cwl"; depends=[Biostrings kebabs S4Vectors]; }; - profileScoreDist = derive2 { name="profileScoreDist"; version="1.10.0"; sha256="0xfnava0bqpsqwzzw5nkwqkcajzacvifd3b2jm3qg5579myjprx4"; depends=[BiocGenerics Rcpp]; }; - progeny = derive2 { name="progeny"; version="1.4.1"; sha256="02z09rbzi305jrwzai8zayxi82563lxcaldp4r9pw564qkbl7pk7"; depends=[Biobase]; }; - prot2D = derive2 { name="prot2D"; version="1.20.0"; sha256="0ljggyj557zmbf51cgvq3sl42xqgqh3a2wayyd6s8501ww1xk7fg"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; }; - proteinProfiles = derive2 { name="proteinProfiles"; version="1.22.0"; sha256="1jjricjdc9l2lk7m48x3isrzmn8jxsy8x865ijnmqz9zlzgzz8zs"; depends=[]; }; - proteoQC = derive2 { name="proteoQC"; version="1.18.1"; sha256="0p2wc5lp7ls80lkjcr5f0zjiq0y9xdallg8yjhprb1cicwxdnd5g"; depends=[dplyr ggplot2 MSnbase Nozzle_R1 plotly plyr reshape2 rmarkdown rpx rTANDEM seqinr tidyr VennDiagram XML]; }; - psichomics = derive2 { name="psichomics"; version="1.8.2"; sha256="15v0vi348n2xjv0mxis5vbh3a7qzzsgl5ah597xb06dxqxn4q795"; depends=[AnnotationDbi AnnotationHub cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma miscTools org_Hs_eg_db pairsD3 plyr R_utils Rcpp recount reshape2 shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; - psygenet2r = derive2 { name="psygenet2r"; version="1.14.0"; sha256="11vsh96pmbf4ypyszgz3yqr0y3q7rxxd61hx2xhwy4v82fq8il2f"; depends=[BgeeDB Biobase BiocManager biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; - puma = derive2 { name="puma"; version="3.24.0"; sha256="1mjl2zkf6kxcadb0pcp157hhq4dgrxzjvs5i5s8mfxx54d7i80ih"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; - pvac = derive2 { name="pvac"; version="1.30.0"; sha256="0r92vrsbvbmyqajcldnjfnyigq5ppsh3bgm5h1i299sr4q7m85iv"; depends=[affy Biobase]; }; - pvca = derive2 { name="pvca"; version="1.22.0"; sha256="0s45j854parwwp5f173p5m8f58n18fqdn4z4z7x2ap5f733fr483"; depends=[Biobase lme4 Matrix vsn]; }; - pwOmics = derive2 { name="pwOmics"; version="1.14.0"; sha256="0v5gsk82899i98b8kv95mj4qry0j8plbj7qb1qsl5k51hz79i5pz"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; - qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.0.4"; sha256="06scrbiwzz3nbl1lbhbrh9fgwv064h8ja05bl308931jlxr9fpgc"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr GenomicRanges ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer statmod stringr tibble tidyr]; }; - qcmetrics = derive2 { name="qcmetrics"; version="1.20.1"; sha256="0v09i2njk3l1am3vgmhn48hii7h4kzwdqz6hyb1ix8n9zc423rzs"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; }; - qpcrNorm = derive2 { name="qpcrNorm"; version="1.40.0"; sha256="0m67a0b3i5nmd2lxx9ga0p6223y9x0bpz2j8gvqzsjnkh4ix1z0g"; depends=[affy Biobase limma]; }; - qpgraph = derive2 { name="qpgraph"; version="2.16.0"; sha256="110krd6sf87qai60qf9ixgkc43i51xvfiqnzdmwk1na2qhda2sp8"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; - qrqc = derive2 { name="qrqc"; version="1.36.0"; sha256="1pdadzlfx5kbsyp79iqxdliilsnhvx1d9j4dj89pl8hgz4n1zyvz"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rsamtools testthat xtable]; }; - qsea = derive2 { name="qsea"; version="1.8.0"; sha256="0m6h75fvzg7chi2sasaqrddxgl27qymxim7j7j3wg0gizhm2w59l"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; - quantro = derive2 { name="quantro"; version="1.16.0"; sha256="1777gjgn855f04yv7hx70h9l8idmjzamkpazaq2cdr8qzhxwy2ib"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; - quantsmooth = derive2 { name="quantsmooth"; version="1.48.0"; sha256="0s7dwf4xkj6ab12ra0ibkn9myif174s476s8nkaz8x8a8yxlzmjn"; depends=[quantreg]; }; - qusage = derive2 { name="qusage"; version="2.16.1"; sha256="1jdslydj6nrwbysmjdp96iga93f5z56m2ilqgwwpcizzhlid25i3"; depends=[Biobase limma lsmeans nlme]; }; - qvalue = derive2 { name="qvalue"; version="2.14.1"; sha256="0kxavzm1j2mk26qicmjm90nxx4w5h3dxighzks7wzihay3k8cysc"; depends=[ggplot2 reshape2]; }; - r3Cseq = derive2 { name="r3Cseq"; version="1.28.0"; sha256="00gx50wlnq3dxybsj8fiwb0qmlyk9f9fddya7wckgs4yjb0y9lv4"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; - rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.22.0"; sha256="1zy72y9wiskwr4nymka3p9cw0zbgg0883422ysiijqkywz5cvawn"; depends=[data_table XML]; }; - rCGH = derive2 { name="rCGH"; version="1.12.0"; sha256="0ydd8685ly3kgvry09d0dc8lm6zl9355361bi7y6ra2v7sz4rvbj"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - rDGIdb = derive2 { name="rDGIdb"; version="1.8.0"; sha256="0rwgcra484hpbch4pxnqa7x0vw5kzabilr308w1f4vdi6ydrz3gk"; depends=[httr jsonlite]; }; - rGADEM = derive2 { name="rGADEM"; version="2.30.0"; sha256="1a3mvxabp7yb275cv1wr0rzyvjhnsaysk2hnmll4z4cci171z2j2"; depends=[Biostrings BSgenome IRanges seqLogo]; }; - rGREAT = derive2 { name="rGREAT"; version="1.14.0"; sha256="0fpi797byvplg73hinsnm07nqgknwb4cbcn0wdw3q178jmksb5j0"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; - rHVDM = derive2 { name="rHVDM"; version="1.48.0"; sha256="0mf74pi9p7kfl9c2hjkmvfzsdfq7sp6gpbxlinj3k3vlbavpkgyg"; depends=[affy Biobase minpack_lm R2HTML]; }; - rMAT = derive2 { name="rMAT"; version="3.32.0"; sha256="1305v5gsbwvy2z7r0gg4gq48xn9yxgbyk4jpjfxaqza49l5sf283"; depends=[affxparser Biobase BiocGenerics IRanges]; }; - rRDP = derive2 { name="rRDP"; version="1.16.1"; sha256="0wahgg5l640nyiznjx10gc6xds0bssw7cpapk844a7i9d7l8my2f"; depends=[Biostrings]; }; - rSFFreader = derive2 { name="rSFFreader"; version="0.30.0"; sha256="14x6xdhdavfrz3ylkys3dlzr8hwshc6v43lccvl4lfhc3jq8xhj5"; depends=[Biostrings IRanges S4Vectors ShortRead XVector]; }; - rTANDEM = derive2 { name="rTANDEM"; version="1.22.1"; sha256="1nfh0423jfzf44acqn3jlnl3561lkxwjxv6i7y3h5j4zi3309q2z"; depends=[data_table Rcpp XML]; }; - rTRM = derive2 { name="rTRM"; version="1.20.0"; sha256="1alz54x6vxsm7mhsasn1cviad0gbg3vlrzm3m5mf9rj61nlz6zgd"; depends=[AnnotationDbi DBI igraph RSQLite]; }; - rTRMui = derive2 { name="rTRMui"; version="1.20.0"; sha256="09rc2kvcpi7c0b0dmq07byrd5208szwm4nvisdr8xhnhcsxq8f51"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; - rWikiPathways = derive2 { name="rWikiPathways"; version="1.2.1"; sha256="090mf50r9r1xwvirxwr1p9cv410q8h5pawv9v5kbnmwqi2b6qvzd"; depends=[caTools httr RJSONIO XML]; }; - rain = derive2 { name="rain"; version="1.16.0"; sha256="02grbm9c8q34np24218myzv0zgkq4p37mynpkm6c6xncywijgcsi"; depends=[gmp multtest]; }; - rama = derive2 { name="rama"; version="1.56.0"; sha256="0ns6dczyj8zglrfni1i0sfiqhpcii5h6hdv8yjg0hkm29g2qjzd0"; depends=[]; }; - ramwas = derive2 { name="ramwas"; version="1.6.0"; sha256="19iqh994x28mninyfay6rkjib947w9wjhsz1ac528w9paqjyk0ha"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; - randPack = derive2 { name="randPack"; version="1.28.0"; sha256="03vi35c3mglpiqrkzgnspgxj42bz952ms9bq0cvy5sp6lh9f6l3l"; depends=[Biobase]; }; - rbsurv = derive2 { name="rbsurv"; version="2.40.0"; sha256="08sd8i68zgbbd8anh828yjdl9j19l7m66wdrpqsmgns4n2gwpg80"; depends=[Biobase survival]; }; - rcellminer = derive2 { name="rcellminer"; version="2.4.0"; sha256="1r627fhzzjvjzdj8y0cxr65csj023c1jwl04jnj2i3g2g4pzcicl"; depends=[Biobase fingerprint ggplot2 gplots rcdk rcellminerData shiny stringr]; }; - readat = derive2 { name="readat"; version="1.8.0"; sha256="0sg4dccxkyl7arlfhd0qmq1kx5f1sykvi822ssh0brp8yjj1hx53"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_sets assertive_types Biobase data_table dplyr magrittr openxlsx reshape2 stringi SummarizedExperiment testthat tidyr]; }; - reb = derive2 { name="reb"; version="1.60.0"; sha256="1a62sfl0hw9nqw25b7hv76m9bn5l56d0sin1ii9s4qa2hj67nwxy"; depends=[Biobase idiogram]; }; - recount = derive2 { name="recount"; version="1.8.2"; sha256="0cnvbbpgijx30p7ma2gi508nvi8w7cli29p9af6lvn3q395fs9ya"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; - recoup = derive2 { name="recoup"; version="1.10.1"; sha256="0s4lhxffaai3l0rs4h62zcn0y5kxnmqxvcdnin726q3sc75b7h7l"; depends=[BiocGenerics biomaRt circlize ComplexHeatmap GenomicAlignments GenomicRanges ggplot2 plyr rtracklayer]; }; - regionReport = derive2 { name="regionReport"; version="1.16.1"; sha256="1c4yf6nda4i9h4mapskfnxrrzgv5ic8bkbwyssd650vx840agj99"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitcitations knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; - regioneR = derive2 { name="regioneR"; version="1.14.0"; sha256="19la74swgzxp90z2nr3pzsgkxd7wp70zl6i2ipv3plg841f6k5zd"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; - regsplice = derive2 { name="regsplice"; version="1.8.1"; sha256="1b5byldkilqshrhdqzgryjasz0m7545x4pa7vy1gk8h91amk52g8"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; - restfulSE = derive2 { name="restfulSE"; version="1.4.1"; sha256="00l2j1plx5bfjici3zp3v7yl8dzhdrkjpqi3wbf39y1l816wmpxx"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; - rexposome = derive2 { name="rexposome"; version="1.4.0"; sha256="1i0c97lfl18s647l36y0wpjd516viysfcybyp6fpkn8j04v7zxg6"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; - rfPred = derive2 { name="rfPred"; version="1.20.0"; sha256="07fw3y7jsk6yzqsq521r2d7mckyn7b167y9sc9r6zqsixj9g3fa1"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; - rgsepd = derive2 { name="rgsepd"; version="1.14.1"; sha256="1my5mhja9qvxl1kwxynf77vawgnk4hmnl4hdrry3x325hpyd2sir"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; - rhdf5 = derive2 { name="rhdf5"; version="2.26.2"; sha256="10zkw3k13wmvyif417gplyf6rwp2gpkjasw97lhwv2f9i32rry9l"; depends=[Rhdf5lib]; }; - rhdf5client = derive2 { name="rhdf5client"; version="1.4.1"; sha256="1pbdwrzwa7r65wkcw821khnvcjy1rbx4vm8rln5srkra5zgmjjhx"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; - riboSeqR = derive2 { name="riboSeqR"; version="1.16.0"; sha256="1nacsbsz77fw4a10nqj2ncsf25q3aaa0gd5w1q0ray2prx7qmlqb"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; - rnaSeqMap = derive2 { name="rnaSeqMap"; version="2.40.1"; sha256="13fa822z9mmidq30b4ar7xqj7qjkkdp6ih8j0rn6hc5gjhsqy6sh"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; }; - rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.12.0"; sha256="0n4jpd9aqbc14wsi8k1vqhdaz7gp6nn7qr3nk3s783q293rjq1m1"; depends=[RColorBrewer]; }; - roar = derive2 { name="roar"; version="1.18.0"; sha256="15650s9vs7dvmqpvrs4xwn6j4kh14yqsx4daqyhhxxr68kn8mklw"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; - rols = derive2 { name="rols"; version="2.10.1"; sha256="02cqiwbrxrhdc3pbq8vr1aasbark51gyf6y7i5z6lxng20sx2l1b"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; - ropls = derive2 { name="ropls"; version="1.14.1"; sha256="1g1r96qmc4j1ynsscglfznm51598m95aiwc2qcawv50g02byzsbv"; depends=[Biobase]; }; - rpx = derive2 { name="rpx"; version="1.18.1"; sha256="14w96lwrx0h1v7pijva2gxwwxsb2lq4cnjaf26wx6wbjw28cni1l"; depends=[RCurl xml2]; }; - rqt = derive2 { name="rqt"; version="1.8.0"; sha256="08kics4hq4y23ydilafylm2rmbnh88hj02rrd5bbl5685as724vn"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; - rqubic = derive2 { name="rqubic"; version="1.28.0"; sha256="0va7263mxij13qyjmqrv9hxbgxig17hjw1617v0gzrcprs978735"; depends=[biclust Biobase BiocGenerics]; }; - rsbml = derive2 { name="rsbml"; version="2.40.0"; sha256="04brk985cdf6psr8ixkqahg9nmb7lrv1jfy0j1c84l2znskya77f"; depends=[BiocGenerics graph]; }; - rtracklayer = derive2 { name="rtracklayer"; version="1.42.2"; sha256="1c76g6h9lx2nm7dvb2zp9dmrpk3vanx3zaz6q9clggpj7yj5lmjd"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; }; - runibic = derive2 { name="runibic"; version="1.4.0"; sha256="1s1zbcbfxbchrh8h9602n5gh8ji8zqll9kfd4wg3w3668ckv7vx3"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; - sRAP = derive2 { name="sRAP"; version="1.22.0"; sha256="0qgskdizjh8z15qx4lvrdy5rg7h20hdg454n2wqvpmrk6wvp0ylp"; depends=[gplots pls qvalue ROCR WriteXLS]; }; - sSeq = derive2 { name="sSeq"; version="1.20.1"; sha256="08f59qg96qkndrlkdyk3i495i00gcx5kj1jcdy6zqkm9j7km88y2"; depends=[caTools RColorBrewer]; }; - safe = derive2 { name="safe"; version="3.22.0"; sha256="0is94jnljq0lsqiyvy91bzkv7xig35q97cjwziszxr9gacizyqay"; depends=[AnnotationDbi Biobase SparseM]; }; - sagenhaft = derive2 { name="sagenhaft"; version="1.52.0"; sha256="0rx7vkm19m18wvyawypp20m1ib7wi8yrmrpj1fg0f15yf9nfiwjg"; depends=[SparseM]; }; - samExploreR = derive2 { name="samExploreR"; version="1.6.1"; sha256="0qgqjd0s4j722z621gi6nggg1m2a123k1rmmxrad01hpwya5magd"; depends=[edgeR ggplot2 RNAseqData_HNRNPC_bam_chr14 Rsubread]; }; - sampleClassifier = derive2 { name="sampleClassifier"; version="1.6.1"; sha256="07aj8rmyvckxngy8y54qqzb85jn6k76l63n0jmdy2c50cizw53l5"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; - sangerseqR = derive2 { name="sangerseqR"; version="1.18.0"; sha256="1dw3s011w0pir3i9zz3b62qx4frwkw541k569w1qhl0z66qidmgz"; depends=[Biostrings shiny]; }; - sapFinder = derive2 { name="sapFinder"; version="1.20.1"; sha256="1yg99gibx8nc8r873y26cbcm5bjh008rhszxykpdbbgl8xfsclv3"; depends=[pheatmap Rcpp rTANDEM]; }; - savR = derive2 { name="savR"; version="1.20.0"; sha256="13bwq2a2pygdkmhrcmvz525wsi5i01j911711zgs6x93wj20b2w7"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; - scDD = derive2 { name="scDD"; version="1.6.1"; sha256="0dp2awajd5281dwpbs0wb8ij2pq9l60p0b80xhxrb41m5qybcri8"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; - scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.2.1"; sha256="04bk4kzs42mi022qr8whngkqxapngnvpxifd0m60r57skz3v6yqa"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; - scPipe = derive2 { name="scPipe"; version="1.4.1"; sha256="1kl1ik1wd3cq7h2njzdnzs9r26qnim4r63c86pfbfymz23n4aqns"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib robustbase rtracklayer S4Vectors scales SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; - scater = derive2 { name="scater"; version="1.10.1"; sha256="0rijhy7g5qmcn927y1wyd63la1fhyar9fv1hccsqd23jd98yc55a"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dplyr ggbeeswarm ggplot2 Matrix plyr Rcpp reshape2 Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment viridis]; }; - scde = derive2 { name="scde"; version="2.10.1"; sha256="1n1r08wqx1bds7lwz2bbksw5l084cmcbgs03jr8s2l92z43kqmm6"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; - scfind = derive2 { name="scfind"; version="1.4.1"; sha256="07lzjqxvdjjzli8ibqvlndgf9n1x477q1pniv91ynrh6jc8dz8cb"; depends=[bit dplyr hash Rcpp reshape2 SingleCellExperiment SummarizedExperiment]; }; - scmap = derive2 { name="scmap"; version="1.4.1"; sha256="1nil8kylf2px6nqjh4lg3fm2mw7j0isynvc6w0lycwj34rzjx3q4"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scmeth = derive2 { name="scmeth"; version="1.2.2"; sha256="19z26ld4fa22ry2pc8nrwx6042im1w4wpkfi9hmgp6bi92aa0vs5"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; - scone = derive2 { name="scone"; version="1.6.1"; sha256="0l1x4cjnfjbpx6k55sjqx03555daa6v63rq0rg6b7jpz8xxzwa7p"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SummarizedExperiment]; }; - scoreInvHap = derive2 { name="scoreInvHap"; version="1.4.0"; sha256="03d7pny3qkcs279869yry8rkw7js3xyrc8b7p4i7hlpzd44x25a3"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; - scran = derive2 { name="scran"; version="1.10.2"; sha256="07mgilr3gq3lnrm1fjm9zhz4w7970bjhsykln1drqy9gkzj5sn7g"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel DelayedArray DelayedMatrixStats dynamicTreeCut edgeR igraph limma Matrix Rcpp Rhdf5lib S4Vectors scater SingleCellExperiment statmod SummarizedExperiment]; }; - scruff = derive2 { name="scruff"; version="1.0.3"; sha256="0ckqlmdclpfbm4y32h9625wzh7g1bx6gx2n460m2kqig9r17cfkl"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; - scsR = derive2 { name="scsR"; version="1.18.0"; sha256="11mf5kv8mk1nlfxd081a7dx1v60yf94cg46b5bjflidp3qhrsi9g"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; }; - segmentSeq = derive2 { name="segmentSeq"; version="2.16.0"; sha256="0pljd8hn2vxcsh22wmv53a7wkw3cdxpdv8q4ksfj5mvasa2mmkvi"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; - semisup = derive2 { name="semisup"; version="1.6.0"; sha256="0lizf5x3abv4g8j4jxmsbbdiqj4f4gybc3jvw7zz12bd3fsj3c1i"; depends=[SummarizedExperiment VGAM]; }; - seq2pathway = derive2 { name="seq2pathway"; version="1.14.0"; sha256="1zr6z9kgsvlcvb6fw2r39kx4jm3dxlyv7z5l9p0lkdykfnm313y8"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; - seqCAT = derive2 { name="seqCAT"; version="1.4.1"; sha256="1qn5l66qipclmcdnfy569px5wrji0mzmfgg2h6ngi94333649lxv"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges lazyeval S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; - seqCNA = derive2 { name="seqCNA"; version="1.28.0"; sha256="1qf76zslj54g6bxll5bi9kqkph1hb5b1b2yg9qr34ywiq4cw7i8i"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; - seqLogo = derive2 { name="seqLogo"; version="1.48.0"; sha256="022vr9ydwcivs7rw7kwj73gfk5gc7ckwa1q66vhd4kw9ylh70v68"; depends=[]; }; - seqPattern = derive2 { name="seqPattern"; version="1.14.0"; sha256="0di83qi83mrlw7i12khsq55d03hlazcywaa9m9pki1sfhafpq733"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; - seqTools = derive2 { name="seqTools"; version="1.16.0"; sha256="0dcql2pmgpaa5vin1zzhx472qm90rw962pd3pw32ispn02yw0f2l"; depends=[zlibbioc]; }; - seqbias = derive2 { name="seqbias"; version="1.30.0"; sha256="0jwlwqa1z2scnaqkrz5hmmakrjaajf4dwd875s7pswvacygiy859"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; }; - seqcombo = derive2 { name="seqcombo"; version="1.4.1"; sha256="0046www9rl5lswcjn6friijd5plj0p7bfg0y0qzqsz7gqpm3nj58"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr rvcheck]; }; - seqplots = derive2 { name="seqplots"; version="1.20.1"; sha256="0hp3x8gdw65wc73hc1rcxbaqypq2zd50axsvcviqfgdv2dcb2ph7"; depends=[BiocManager Biostrings BSgenome class DBI digest DT fields GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 Rsamtools RSQLite rtracklayer S4Vectors shiny]; }; - seqsetvis = derive2 { name="seqsetvis"; version="1.2.1"; sha256="0x5410b3qwqn34lzs1x75ldlv6xmvdbjyxg8ja0gyg4hz5bc4vaj"; depends=[data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma png RColorBrewer Rsamtools rtracklayer S4Vectors]; }; - sesame = derive2 { name="sesame"; version="1.0.0"; sha256="01qxdnpkilxv18fpl3rizxri2l7crs62z8nd7ywhxfm6g4ch5l1z"; depends=[DNAcopy GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore R6 randomForest S4Vectors sesameData wheatmap]; }; - sevenC = derive2 { name="sevenC"; version="1.2.0"; sha256="1p2xkv0n8hl9s4dlg54wgry73vnnlzylwximhan2ymnp3hgbg4j0"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; - sevenbridges = derive2 { name="sevenbridges"; version="1.12.5"; sha256="15rvjlv7abcic06sbvhyy4ii6cccc06xiyk45qk638n279ixl7aa"; depends=[curl docopt dplyr httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; - shinyMethyl = derive2 { name="shinyMethyl"; version="1.18.0"; sha256="0dzg1idkdy4x9h3z5yashrb03ad8ncjxz5j05jlaxx6k4aa7z8j8"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; - shinyTANDEM = derive2 { name="shinyTANDEM"; version="1.20.1"; sha256="0lz4jr96g20fbrd34f9km6rj08yb2y09gp7zxnm0inlpdkvb4dby"; depends=[mixtools rTANDEM shiny xtable]; }; - sigFeature = derive2 { name="sigFeature"; version="1.0.0"; sha256="0kjf4ss0baq4p7nn305szpvpdssagndxjmggdgfm6mfjsgfi5nj1"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; - sigPathway = derive2 { name="sigPathway"; version="1.50.0"; sha256="0pygrla2q2151981gshzv51jnj60h1df3vby5gsxqvxn2pdr4bv3"; depends=[]; }; - sigaR = derive2 { name="sigaR"; version="1.30.0"; sha256="1vlmd6rqdhz9vzvjidxrq7k9vbbp1c82qspkmdxd9nkycyjjp5cg"; depends=[Biobase CGHbase corpcor igraph limma marray MASS mvtnorm penalized quadprog snowfall]; }; - siggenes = derive2 { name="siggenes"; version="1.56.0"; sha256="0cjlb5r04x15xkhk00i3wvpx21kj0k29pn0mj3whwqk31zznnk1b"; depends=[Biobase multtest]; }; - sights = derive2 { name="sights"; version="1.8.1"; sha256="14xch1qaqs4wcwgpys916r2ih3c150my1fqg9qr9qws9m1gbf7mn"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; - signeR = derive2 { name="signeR"; version="1.8.0"; sha256="1qpaa8ag8lv9s7340fdk3k3qc2jyq4r8268rvxb038zdrv7nzvv4"; depends=[BiocGenerics Biostrings class GenomicRanges nloptr NMF PMCMR Rcpp RcppArmadillo VariantAnnotation]; }; - signet = derive2 { name="signet"; version="1.2.3"; sha256="1qzj0mn5jlijrnk9wi5mqq3xj4c8jmb5vjm7q4ww8wiqmzaq41mm"; depends=[graph igraph RBGL]; }; - sigsquared = derive2 { name="sigsquared"; version="1.14.0"; sha256="1y6h3z5mnww2f26hw4a09qiwpgij89bixf3ak5b253apkwd4bpi9"; depends=[Biobase survival]; }; - similaRpeak = derive2 { name="similaRpeak"; version="1.14.0"; sha256="0wf24nk2vibspqdkgw1a55xhnxs1ygshi548ms0lswkprrqcllg2"; depends=[R6]; }; - simpleaffy = derive2 { name="simpleaffy"; version="2.58.0"; sha256="0bry0d2vw0w2rrpnmfm1kl5v4rdclypmy33jvs9l43vd6vx2ra9s"; depends=[affy Biobase BiocGenerics gcrma genefilter]; }; - simulatorZ = derive2 { name="simulatorZ"; version="1.16.0"; sha256="19xjhrjwxlpygvv7xs752jsvdnqwzj742jkwzsz2nzwkixkw41hf"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc SummarizedExperiment survival]; }; - sincell = derive2 { name="sincell"; version="1.14.1"; sha256="0id0m6pkx7myg32m5ydwjhmhw5ighlzpi2hksp23sb0ji02y7iyv"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; - singleCellTK = derive2 { name="singleCellTK"; version="1.2.3"; sha256="1n0gxrj7wshzxpqwsmsicrhdf4q45afywqdc59yy2fxm440s0w50"; depends=[AnnotationDbi ape Biobase circlize cluster colourpicker ComplexHeatmap data_table DelayedArray DESeq2 DT enrichR ggplot2 ggtree gridExtra GSVA GSVAdata limma MAST matrixStats multtest plotly RColorBrewer reshape2 Rtsne S4Vectors shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SummarizedExperiment sva]; }; - singscore = derive2 { name="singscore"; version="1.2.2"; sha256="0a32k23l26vjgag7vgv21n9vl8qjy6asrq7ms22wiw9lmg2qkyyc"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel ggsci GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape SummarizedExperiment tidyr]; }; - sizepower = derive2 { name="sizepower"; version="1.52.0"; sha256="082hfzw8348fra6fr1gli5cqjnrg3bgyx28ccy66jzxvrijm2qfl"; depends=[]; }; - skewr = derive2 { name="skewr"; version="1.14.0"; sha256="09132dwp8h3wdrf0agyc0vmby5z7c2hd3px4jrp9vgi2x1849mvn"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; - slalom = derive2 { name="slalom"; version="1.4.1"; sha256="0kb4y590cdph90k27av45jy889i3s1jarlhj57lyg8g14sr9sxq6"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; - slingshot = derive2 { name="slingshot"; version="1.0.0"; sha256="0nrqzsjwyk78cahw21x4i5lqac7h85k6nrq045nq4jmxyc977li3"; depends=[ape clusterExperiment igraph matrixStats princurve rgl SingleCellExperiment SummarizedExperiment]; }; - slinky = derive2 { name="slinky"; version="1.0.2"; sha256="1bjs41p3a7ggk6brj2hih84p4qi8qd398xzrh1r8lrdwjy1cm6yl"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; }; - snapCGH = derive2 { name="snapCGH"; version="1.52.0"; sha256="15fx1ryc6ab1aia768wpp8zhggfz2l9vildhkjh8chwaam1qd610"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; - snm = derive2 { name="snm"; version="1.30.0"; sha256="1qjd7g6c03rygp95cpry1m3yi83lyd57zp94whaymfriz39dx2i9"; depends=[corpcor lme4]; }; - snpStats = derive2 { name="snpStats"; version="1.32.0"; sha256="1pplx4pf9bqi7v5v1l74yknc1s61carvbqkf327ky7vbvp0bck33"; depends=[BiocGenerics Matrix survival zlibbioc]; }; - soGGi = derive2 { name="soGGi"; version="1.14.0"; sha256="0v0hvxadqsmscb8h0zy8xi4336pxha2vj5xk03ms81734jaj6adj"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.6.1"; sha256="1znhv5j4dijwiq5rdslvgrmzdh0cbc6mnx41a5njx9zkfgrfkw6j"; depends=[MASS MCMCpack optparse tmvtnorm]; }; - sparsenetgls = derive2 { name="sparsenetgls"; version="1.0.1"; sha256="01apq9p2hqivc0va5rpl3k90ipgr1i9a228r6b8wygxxy62dqphw"; depends=[glmnet huge MASS Matrix parcor]; }; - specL = derive2 { name="specL"; version="1.16.1"; sha256="12g6hp2x89ydv1ip88dmn48wgawhrpn39sfyrf59pw638gy4g4fl"; depends=[DBI protViz RSQLite seqinr]; }; - spikeLI = derive2 { name="spikeLI"; version="2.42.0"; sha256="055zbrbh6wf3vvnc9p8px2ffz9wdhdg0h96260r7c72ax3v6wi5g"; depends=[]; }; - spkTools = derive2 { name="spkTools"; version="1.38.0"; sha256="0rm2vlzid3wjm1g1kzmjklga1gcf852aznhxb1xr50v8drivkkz9"; depends=[Biobase gtools RColorBrewer]; }; - splatter = derive2 { name="splatter"; version="1.6.1"; sha256="1kw9shzqwph44q2fksgp79mrjq23j3806clc4xydw3ys2w4kspj8"; depends=[akima BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats scales scater SingleCellExperiment SummarizedExperiment]; }; - spliceSites = derive2 { name="spliceSites"; version="1.30.0"; sha256="1j40awy9irx53d1cdsx52pnxirjrrvgsj9zx5qhl2556ca65l26n"; depends=[Biobase BiocGenerics Biostrings doBy IRanges seqLogo]; }; - splicegear = derive2 { name="splicegear"; version="1.54.0"; sha256="0phpkgjkc4c8lfr8xsciqyz7imsjpc3sxwsh95glxhrsm7i2mnip"; depends=[annotate Biobase XML]; }; - splineTimeR = derive2 { name="splineTimeR"; version="1.10.0"; sha256="15dzhijkhpy7d8hwif59bic83fk6fnyjpp4qi7y7vwq139j6yaj2"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; - splots = derive2 { name="splots"; version="1.48.0"; sha256="0s10ha17p4yf6id0h0r0a2fk992jp4ah7v8ani689zy6pcc0w34d"; depends=[RColorBrewer]; }; - spotSegmentation = derive2 { name="spotSegmentation"; version="1.56.0"; sha256="06b4dwjll21i13ag5f2si5499gc6h63b5rnlz372pg95idwxsqbh"; depends=[mclust]; }; - srnadiff = derive2 { name="srnadiff"; version="1.2.1"; sha256="1cm2xjj0wd6ll45aa1gq4lzg49sr4v3zni3x0mgma6pkj2prcbwf"; depends=[BiocParallel BiocStyle DESeq2 devtools GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - sscore = derive2 { name="sscore"; version="1.54.0"; sha256="0anpfqvv6as5i28bb0i2h86p51m42ch4gzap5lcxia97lzvxh210"; depends=[affy affyio]; }; - sscu = derive2 { name="sscu"; version="2.12.0"; sha256="0y41krw0r0kmlp32b7cmlwf5qpncha8j357mx9sr3zvm52dphlpp"; depends=[BiocGenerics Biostrings seqinr]; }; - ssize = derive2 { name="ssize"; version="1.56.0"; sha256="13bc5hbnqqxr16pqw0waq29mpgrf4sys4kg63np2a4hpc6l2nrqk"; depends=[gdata xtable]; }; - ssviz = derive2 { name="ssviz"; version="1.16.1"; sha256="01wq3y9xf4g5d2df6j2cckwk9rm1y6ya39g33c0m13jk3xrxvcwi"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; - staRank = derive2 { name="staRank"; version="1.24.1"; sha256="08pac19nsyb8cfwbsc31m8daiig8p1px4y4rjc00ypvari2hnl2c"; depends=[cellHTS2]; }; - stageR = derive2 { name="stageR"; version="1.4.0"; sha256="063mprdjjvys09cxlgrd930r96i470z30h00pf0h15g5h4w02jak"; depends=[SummarizedExperiment]; }; - statTarget = derive2 { name="statTarget"; version="1.12.1"; sha256="19b8b00kcd6p9b7g4n3jaf8z80fz6y5d7bil8m8bj7ldr2l8dqr0"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; - stepNorm = derive2 { name="stepNorm"; version="1.54.0"; sha256="16sn793zj06dh69cwzx3vfjkx4gs3dy6x0apyh01vwhnqkani4vl"; depends=[marray MASS]; }; - strandCheckR = derive2 { name="strandCheckR"; version="1.0.0"; sha256="0pmw6iwynpy6mdfh8mb939100715mpwy458i6w6sw1pjghlykrzq"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - subSeq = derive2 { name="subSeq"; version="1.12.1"; sha256="151fa343n1w7mbrhqcf2f2bhh0s8km0a8lcx534avi1mnp539ql9"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; - supraHex = derive2 { name="supraHex"; version="1.20.0"; sha256="0p27h8xg104ip8lwasvac74hjj9582xc85q06q0n8lr660chfx2b"; depends=[ape hexbin MASS]; }; - survcomp = derive2 { name="survcomp"; version="1.32.0"; sha256="1f6vz8fbifa5lsywxcqdak5gb7fvz6rvds5a7bvdginjy1zindw9"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; - sva = derive2 { name="sva"; version="3.30.1"; sha256="0czja4c5jxa0g3fspi90nyajqmvzb29my4ykv2wi66h43f5dlwhq"; depends=[BiocParallel genefilter limma matrixStats mgcv]; }; - swfdr = derive2 { name="swfdr"; version="1.8.0"; sha256="0hib9mb1yrfl3hqddkqws32ninyc8ylzw8gd4a0sv06l16ks8b4m"; depends=[dplyr ggplot2 reshape2]; }; - switchBox = derive2 { name="switchBox"; version="1.18.0"; sha256="1s49vi0vyh0bmrc6marn69hi9ln12j3kyjkkm2z5fpvv3rvxhgw7"; depends=[gplots pROC]; }; - switchde = derive2 { name="switchde"; version="1.8.1"; sha256="1ydc9h62iyfz0786c5zhz3189p2f7sf3z6fjlvqwjqxva5j0f12b"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; - synapter = derive2 { name="synapter"; version="2.6.1"; sha256="19rf8kkqf070ldhnrdi3xl23j2slv4qadw9cx8wvc4p994f2abj9"; depends=[Biobase Biostrings cleaver knitr lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; - synergyfinder = derive2 { name="synergyfinder"; version="1.8.0"; sha256="1idc0lnjw8zx6nih1hrzfq9h40zkbdv0iv9si214wx4ynf0w18iv"; depends=[drc ggplot2 gplots gridBase lattice nleqslv reshape2 SpatialExtremes]; }; - synlet = derive2 { name="synlet"; version="1.12.1"; sha256="13rghqqbkxni121ds0slf6cnj2g5zbm3sbbcli95z7mxy2wn3syg"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; - systemPipeR = derive2 { name="systemPipeR"; version="1.16.1"; sha256="0qzydz87rld2nhwzbfgrw5jfgh8maa9y54mjx9c4285m11qj2shq"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; }; - tRNA = derive2 { name="tRNA"; version="1.0.0"; sha256="1kzl79q0zim9y7px0dirk41qay96nl2bz8sw76nx56pr1d5jh245"; depends=[assertive BiocGenerics Biostrings GenomicRanges ggplot2 IRanges S4Vectors scales stringr XVector]; }; - tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.0.0"; sha256="0b6h2xzxyl3kh1h8fijm5l0cqy7364p5l0s604fvhnaxa6n3y1ds"; depends=[assertive Biostrings GenomicRanges httr IRanges S4Vectors stringr tRNA xml2]; }; - tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.2.0"; sha256="1pcnwlxbw2g4398y4q94m6z7xsl492hik4z57xgjcri35y3ma06x"; depends=[assertive BiocGenerics Biostrings GenomeInfoDb GenomicRanges rtracklayer S4Vectors stringr tRNA]; }; - tRanslatome = derive2 { name="tRanslatome"; version="1.20.0"; sha256="0aa2gd1mp5lzp62vl0556i7q761jyi02ls04nw175fbq6381l2vy"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; }; - tenXplore = derive2 { name="tenXplore"; version="1.4.1"; sha256="18bg0wc7y8lafi38mq83qqhrd03wyyk856fa2axinixgn2qid3pq"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; - ternarynet = derive2 { name="ternarynet"; version="1.26.0"; sha256="0xar386wy1viks44s2gyiakmvy5d1k2qc422zn74nc0wwgky0jmc"; depends=[igraph]; }; - tigre = derive2 { name="tigre"; version="1.36.0"; sha256="1hyl4d1111bs6bgjpy3dwkfj9yi11r07hwsf2jn4iqcmr9l6g0rz"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; - tilingArray = derive2 { name="tilingArray"; version="1.60.0"; sha256="0ak32w49adrrh6xaf20g48xnsxr33d3irng3lbv03y2al812wpha"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; - timecourse = derive2 { name="timecourse"; version="1.54.0"; sha256="1cpmcbjwsh2mn4c0bgpvcq5da4cngsznfvz7r6cpma7iivqam1jz"; depends=[Biobase limma marray MASS]; }; - timescape = derive2 { name="timescape"; version="1.6.0"; sha256="0wnk4iwy8ji4xn1cyh257byxfvh5njd9z08hl5f74k1ni94llkp6"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; - tkWidgets = derive2 { name="tkWidgets"; version="1.60.0"; sha256="17z04pqys4nhs0c6phffkwj2yw34cajpfbgx70jsd0dba125pzh7"; depends=[DynDoc widgetTools]; }; - tofsims = derive2 { name="tofsims"; version="1.10.1"; sha256="0wgpl4az21zbixjl3ngwpxq81i86yhd41lhhnphrvrwnl7n7gk8x"; depends=[ALS ChemometricsWithR KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; - topGO = derive2 { name="topGO"; version="2.34.0"; sha256="1j1jcd16j564kr6qz28140fzmnh9xasi84v1c1fi98sqv30zq9bh"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; - topdownr = derive2 { name="topdownr"; version="1.4.1"; sha256="19v8m0lr1y69x1b3k01vlimfi6nzqgjg83ifc7xvzzqfsl45z09w"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; - trackViewer = derive2 { name="trackViewer"; version="1.18.3"; sha256="1i64px5f3iymaz933998b63wf6flal7cbr36v3i7w5xr9p2fnp04"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rgraphviz Rsamtools rtracklayer S4Vectors scales]; }; - tracktables = derive2 { name="tracktables"; version="1.16.0"; sha256="160zh73yripvd150jfwm1xpk1amrg1qqjcyl8wwclpss0ks04ayb"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; - transcriptR = derive2 { name="transcriptR"; version="1.10.1"; sha256="17m1i36jj7fdh4qqd29zia68q7yjhxgh47xndcbgbik78pfnnig7"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; - transcriptogramer = derive2 { name="transcriptogramer"; version="1.4.1"; sha256="1qd447glnwk3ysxnfjyn5i2smyq79mn6qgsa0klrgr3v1909ib57"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; - transite = derive2 { name="transite"; version="1.0.2"; sha256="1xrkk7n6zgch24q1hx4fxj2z8ii5pfpakjmf5696v1w1d153415m"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; - traseR = derive2 { name="traseR"; version="1.12.0"; sha256="1bf2cblagqkwsc66l9820kb7yh05bk62k0rplnqznnl36i5fw428"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; - treeio = derive2 { name="treeio"; version="1.6.2"; sha256="0fvyj3m8yzq94cs2nhmmq6qvf7qqccxan2qkq764a9qlfrrpwa2c"; depends=[ape dplyr jsonlite magrittr rlang rvcheck tibble tidytree]; }; - trena = derive2 { name="trena"; version="1.4.2"; sha256="1rrbkjizc4glp4ql30wn6ijmym4vxl3xda3ffy02maab1vg07mjp"; depends=[AnnotationDbi BiocParallel biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI flare GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMariaDB RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr]; }; - triform = derive2 { name="triform"; version="1.24.0"; sha256="12ca24pv1r5vbw3rq345jqg7x3prrbsxk6445zikpzfblwmw0b4s"; depends=[BiocGenerics IRanges yaml]; }; - trigger = derive2 { name="trigger"; version="1.28.0"; sha256="0wi8lk1ld21h1i0i31c858a0sgisg4ak11kyxjmsh9lyhfzayvwq"; depends=[corpcor qtl qvalue sva]; }; - trio = derive2 { name="trio"; version="3.20.0"; sha256="0fz74p4xj19mp2bbrlcrn2gr0yg7hhk0d1a2dy2k2shg7vwr15lj"; depends=[]; }; - triplex = derive2 { name="triplex"; version="1.22.0"; sha256="1fh7446v07bdhj7babj3gjq4n4zk1y7r37fs30r2cgc9lhqyccr9"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; - tspair = derive2 { name="tspair"; version="1.40.0"; sha256="1anz7by0hg51ywk9q49xjaqm8agiqdwd6rnf1mp6axph1wjfhkjm"; depends=[Biobase]; }; - tweeDEseq = derive2 { name="tweeDEseq"; version="1.28.1"; sha256="0imnscn9yf79jciq7zdzasdf777cq4sqvhnhvsy6y69vzmhi5952"; depends=[cqn edgeR limma MASS]; }; - twilight = derive2 { name="twilight"; version="1.58.0"; sha256="16vj02kxlfii0r8cdvbd4q6yqm54znn2i0697dmdfmrqbvn9rjky"; depends=[Biobase]; }; - twoddpcr = derive2 { name="twoddpcr"; version="1.6.0"; sha256="1j4xb6y2hnrvaspv7lpirx62801rq0y0gkqdgy87qkphqsf4n44z"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; - tximeta = derive2 { name="tximeta"; version="1.0.3"; sha256="10fxda9hn1nfz93mni0fv2snpqkr48x73ffjkd5hv4bwqv26cma8"; depends=[AnnotationDbi BiocFileCache ensembldb GenomeInfoDb GenomicFeatures jsonlite rappdirs S4Vectors SummarizedExperiment tibble tximport]; }; - tximport = derive2 { name="tximport"; version="1.10.1"; sha256="16wp09dm0cpb4mc00nmglfb8ica7qb4a55vm8ajgzyagbpfdd44l"; depends=[]; }; - uSORT = derive2 { name="uSORT"; version="1.8.1"; sha256="1z6vlcgs83pc7388c6jwpm9dgv9rr95gsksqy5gaiyy0pa0bga8j"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; - unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.18.0"; sha256="110kb1g1kkfgk3nw099wyaww8l2jk3kk41bsz3gmbb2jni9v0ykx"; depends=[BiocGenerics HTqPCR]; }; - universalmotif = derive2 { name="universalmotif"; version="1.0.22"; sha256="016r859xn2306zsckg0xpwv3ssngngw7drc27h7jhikmf5wkvbv1"; depends=[ape BiocGenerics Biostrings ggplot2 ggseqlogo ggtree gtools processx Rcpp Rdpack]; }; - variancePartition = derive2 { name="variancePartition"; version="1.12.3"; sha256="1ssb41g22440xcv05c3ggfzawjkl3mp74b58spjg5wcwp1rx3xyi"; depends=[Biobase colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS pbkrtest progress reshape2 scales]; }; - vbmp = derive2 { name="vbmp"; version="1.50.0"; sha256="08iyryhmahmm1p93c0kgvknf9gkd7i4l4jd3b9a234vwx5xy0zx2"; depends=[]; }; - vidger = derive2 { name="vidger"; version="1.2.1"; sha256="1gz2v4zg6ry06msmxrr3f47i4gc2sfijrbkd0l5x7crp8a2mkcm3"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; - viper = derive2 { name="viper"; version="1.16.0"; sha256="0pi9s37xw03pkqmsyqnigzfjmq9llk0gwh92ply07mbppldssrwc"; depends=[Biobase e1071 KernSmooth mixtools]; }; - vsn = derive2 { name="vsn"; version="3.50.0"; sha256="1g6qkpykw99jm2wv2i61dg2ffwk0n8fm4s5pm2q4c024vw5c9b69"; depends=[affy Biobase ggplot2 lattice limma]; }; - vtpnet = derive2 { name="vtpnet"; version="0.22.0"; sha256="03f96286lvhy7wlpi39awf5fjx1b40jzjp5mslfgpwx9gvk0kzdw"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; - vulcan = derive2 { name="vulcan"; version="1.4.0"; sha256="0w9cmfn7m2yn98jrgf1ixkchd2jmfinpbxhcycdfmq2yihla3l3v"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; - wateRmelon = derive2 { name="wateRmelon"; version="1.26.0"; sha256="0ymchg3nk89dm92hqksq7cmvwr2a7fxr7z4ymfigj6ifw2r4575s"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; - wavClusteR = derive2 { name="wavClusteR"; version="2.16.1"; sha256="1lxi7yn2l9gifqx08mkfc7mswb1lvca5di48g5w6pghf1jdp0rkp"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr wmtsa]; }; - waveTiling = derive2 { name="waveTiling"; version="1.24.0"; sha256="023d329nk0w7wm8zplhqw7qwc8jwlscxkf8kbafjljrzpzwvh8an"; depends=[affy Biobase Biostrings GenomeGraphs GenomicRanges IRanges oligo oligoClasses preprocessCore waveslim]; }; - weaver = derive2 { name="weaver"; version="1.48.0"; sha256="1hys2gjr353lb798anamfg6mhv8hadh90qs9sc99zi96ps6c24hf"; depends=[codetools digest]; }; - webbioc = derive2 { name="webbioc"; version="1.54.0"; sha256="16n6wc9q51wfpmh9y77p53sqdqdd8pn50c67vf6h4n7gv5wgnpwi"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; - widgetTools = derive2 { name="widgetTools"; version="1.60.0"; sha256="0mz69pdr6q69avsvs6r5ncdkdmgwfislpil4v18dsflw4j454gwf"; depends=[]; }; - wiggleplotr = derive2 { name="wiggleplotr"; version="1.6.1"; sha256="12fhbskkjwv4d9bdy3gab8n9pcf7qpwiwgx0248as445vfw8dil3"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; - xcms = derive2 { name="xcms"; version="3.4.4"; sha256="073f25m7y8z4560k93d99fv72pr7nrgrp054zssi7jhas4l3ddww"; depends=[Biobase BiocGenerics BiocParallel lattice MassSpecWavelet MSnbase multtest mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors]; }; - xmapbridge = derive2 { name="xmapbridge"; version="1.40.0"; sha256="1a93vxrv9brfwv64wpiriwak1chlz6rg25dhcb9hyk2b8j8ky3ag"; depends=[]; }; - xps = derive2 { name="xps"; version="1.42.0"; sha256="0x391j5rlihp64k5wslghlrw6vi4xwwjphskvl1k3iffda5yqknb"; depends=[]; }; - yamss = derive2 { name="yamss"; version="1.8.1"; sha256="13pln09j08fjsr7bj17apy4j0sr79n7jzshi8jbnz57jil7k6ia9"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; - yaqcaffy = derive2 { name="yaqcaffy"; version="1.42.0"; sha256="192n1zvd54nm9q71vyb6dcr7ia6givf4bjwf6542jjig085lwhxk"; depends=[simpleaffy]; }; - yarn = derive2 { name="yarn"; version="1.8.1"; sha256="0c84x1zq34hadpsyaa873r8kg0jcxp09c2z63377hlmhsll90l7s"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; - zFPKM = derive2 { name="zFPKM"; version="1.4.1"; sha256="0rvfrjxxvfng9fxxn316gm96v4rahx62vlk3axr2bzjbi1r4s8v5"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; - zinbwave = derive2 { name="zinbwave"; version="1.4.2"; sha256="1gsh4wgbdb021hqscm8j4mln55xxwrnqkmnllxn3vvbyf4c6zb08"; depends=[BiocParallel copula edgeR genefilter glmnet Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; - zlibbioc = derive2 { name="zlibbioc"; version="1.28.0"; sha256="0bjvzy24kab7ank02cc1qk2ikcz4dllgf66wpsdl0d3zp4gn3l2h"; depends=[]; }; + ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.18.0"; sha256="09ihbgxrhpcz2q7svldhm710a0yrhiqk9p0q0myv11c2w50ymwkw"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; }; + ABSSeq = derive2 { name="ABSSeq"; version="1.42.0"; sha256="1c31cnwgipz5cwws6xfwy9rrsgg0prr9jyxhypcddqxcbp02mby5"; depends=[limma locfit]; }; + ABarray = derive2 { name="ABarray"; version="1.56.0"; sha256="0csvwlx3yi6irv01wx057sgcs0ygrik8x6348bbrcb2js0525zqi"; depends=[Biobase multtest]; }; + ACE = derive2 { name="ACE"; version="1.6.0"; sha256="1dhpz5x2bcdxfvcdm06z8rrknw3fry89jqp2zyi5x7v30r7fascf"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; + ACME = derive2 { name="ACME"; version="2.44.0"; sha256="0hsfi1xmdp6kxv4vpacy8awwj2mils7avfqx418s2fwh6ms0l2a9"; depends=[Biobase BiocGenerics]; }; + ADAM = derive2 { name="ADAM"; version="1.4.0"; sha256="1r702walyspqad5xr1qf5xjifszlmgqqac4qbvz3qg1zcgc9l17w"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; + ADAMgui = derive2 { name="ADAMgui"; version="1.4.0"; sha256="05apdy8r16r9j42wd43y67206ysmi2qhyayyc9v1adnxdsx5jiw0"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; + ADaCGH2 = derive2 { name="ADaCGH2"; version="2.28.0"; sha256="0xwzl1yhcgv6rppzdspyygs8nr1hhnv53xnc3m2wh30di09fpyi9"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; + AGDEX = derive2 { name="AGDEX"; version="1.36.0"; sha256="1n08v7x7fgqyr79dmc5fkbcl6bgd1gjfx61hpm2ixp2px8b609ic"; depends=[Biobase GSEABase]; }; + AIMS = derive2 { name="AIMS"; version="1.20.0"; sha256="024hd1p37ccmfvvd5saa5qa531mb6rp90glzmd1scibz6hg4jg1g"; depends=[Biobase e1071]; }; + ALDEx2 = derive2 { name="ALDEx2"; version="1.20.0"; sha256="1cns8gdgcic6whry6b3hjlzhhfnrwjd4n4d1ijr3yaamp010rhph"; depends=[BiocParallel GenomicRanges IRanges multtest S4Vectors SummarizedExperiment zCompositions]; }; + ALPS = derive2 { name="ALPS"; version="1.2.0"; sha256="0q4ya4nqzpi57amwyyj3fghdqf8q8ccxgf001na1dy6v15xjd9pv"; depends=[assertthat BiocParallel ChIPseeker corrplot data_table dplyr genefilter GenomicRanges GGally gghalves ggplot2 ggseqlogo Gviz magrittr org_Hs_eg_db plyr reshape2 rtracklayer stringr tibble tidyr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + AMARETTO = derive2 { name="AMARETTO"; version="1.4.0"; sha256="1cm0v59ihdxbc36sbxhc02vk3sz0wka6swi62scbskpdjxrzvsig"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; + AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.14.0"; sha256="1cbj2w8dvvqslhg600gh32pi3ayjcsz2zizr9gs2jmj2xx9bn3df"; depends=[]; }; + ANF = derive2 { name="ANF"; version="1.10.0"; sha256="1ij1f3bba57vqdx19aij6ac4y1hnakqgvz2qlzbibrw7caq3n8ir"; depends=[Biobase igraph MASS RColorBrewer survival]; }; + APAlyzer = derive2 { name="APAlyzer"; version="1.2.0"; sha256="0fr2zx1liyj93ky7yl30ym8kay32rrng89p6yjrakkgbsrg8p1sx"; depends=[DESeq dplyr ensembldb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel repmis Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; + ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.28.0"; sha256="0zhhvr051fmh6g0bqrl525mkf094j1jnc57j201jlzmvdpkydlpv"; depends=[ARRmData]; }; + ASAFE = derive2 { name="ASAFE"; version="1.14.0"; sha256="0n8dza7bq9fw1m6v48zbh7rncl84372z38s5ypphph2x7vhiwccl"; depends=[]; }; + ASEB = derive2 { name="ASEB"; version="1.32.0"; sha256="0q0wvravky4h1gg74aqk9rrg2lr92wnkhf8dgxcdwya02mgigg8l"; depends=[]; }; + ASGSCA = derive2 { name="ASGSCA"; version="1.22.0"; sha256="0zsj14ija2ns6vajszjjwcl2hbz0m182vgzgf5gbwrijns4ky091"; depends=[MASS Matrix]; }; + ASICS = derive2 { name="ASICS"; version="2.4.3"; sha256="03lfmxcw3188b0xaycfp78dvzcm3xkayniipicmsnw5vs2ch0dz0"; depends=[BiocParallel ggplot2 gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; + ASSET = derive2 { name="ASSET"; version="2.6.0"; sha256="0p20z3d4wh84pk75i1avcs4fz7y59rn2zbzqq6hb3m5x7kb97x2c"; depends=[MASS msm rmeta]; }; + ASSIGN = derive2 { name="ASSIGN"; version="1.24.0"; sha256="1qspirfdmqgh2lxba5xgny4qf12mc1wkbxbx7dbdp2r4balbca1h"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; + ASpediaFI = derive2 { name="ASpediaFI"; version="1.2.0"; sha256="10k8cj6klbxidhrxp2ms059k5aacbgmgz2psp7dx82agwssxi3si"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix mGSZ reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; + ASpli = derive2 { name="ASpli"; version="1.14.0"; sha256="0lbi8jmkbl8jrf6i6xraqk419k7jlgpym3hj87jvr1ws3jp7yxrl"; depends=[AnnotationDbi BiocGenerics BiocStyle edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rsamtools S4Vectors]; }; + ATACseqQC = derive2 { name="ATACseqQC"; version="1.12.3"; sha256="12710c4024pndwwqiiqr6dhrd360z26fc8r3fxhs739gyd0ddk9r"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; + AUCell = derive2 { name="AUCell"; version="1.10.0"; sha256="0fgqkgjhf92vkljkwn44lm8cjvzq1lvk80nk6xhsp5q6s5isbmns"; depends=[BiocGenerics data_table GSEABase mixtools R_utils S4Vectors shiny SummarizedExperiment]; }; + AWFisher = derive2 { name="AWFisher"; version="1.2.0"; sha256="0ay1pv299akm9nbqhsw1s638c0wh15kgn3zc3qrwlivi9pzfa6qy"; depends=[edgeR limma]; }; + AffiXcan = derive2 { name="AffiXcan"; version="1.6.0"; sha256="0073z6waxg6bba1p4ks5cqilyywrm5c7cv6ggjpqg3msz4f2y3y8"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; + AffyCompatible = derive2 { name="AffyCompatible"; version="1.48.0"; sha256="0394sr4spafhfypjsafwjr0y0zsgv52ajdcyvsmkdk7375898lqd"; depends=[Biostrings RCurl XML]; }; + AffyExpress = derive2 { name="AffyExpress"; version="1.54.0"; sha256="1bby64wzk1nk1j2q2qdv9gi19hajkvlpyvblrzsrcr6zvdlyp5b8"; depends=[affy limma]; }; + AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.34.0"; sha256="046r90brgh141q8a8jaimnya5mlmil0bvwmcv8l3pz7w5lflpmgq"; depends=[affy]; }; + AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.38.0"; sha256="0vdcql0yrxgkbzdpyfcprsb8vk00j9gls598drcxz2dqvrbgjjfr"; depends=[affy affycoretools Biobase limma preprocessCore]; }; + AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.26.0"; sha256="0irn4xdlvazdkv0055f45693y6zvqaz7j3vml5xscnh45ls6vmqr"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; + AlphaBeta = derive2 { name="AlphaBeta"; version="1.2.3"; sha256="0cc893ld3w9va793261ca49852b12ppzhl366lasp9maza3m6vsj"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; + AnVIL = derive2 { name="AnVIL"; version="1.0.3"; sha256="1vfy4ygjxljhq0knhniq4zdyimh9351b5dynx9czclvq9b3jlilz"; depends=[BiocManager curl dplyr futile_logger httr jsonlite rapiclient tibble]; }; + AnalysisPageServer = derive2 { name="AnalysisPageServer"; version="1.21.0"; sha256="0p5yy5fljkqix7q8yp0pzb6f1xvp9xyhafqidw0j7k8slbak49nk"; depends=[Biobase graph log4r rjson]; }; + Anaquin = derive2 { name="Anaquin"; version="2.12.0"; sha256="1ll1mf9wpb8b61xwk4lxczxalbrxn5dxcnv4gia277bjzrnva2hf"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; + AneuFinder = derive2 { name="AneuFinder"; version="1.16.0"; sha256="0ii085zd244p3v0ai2q7yvf0mynvf5v3n5zxmbznifs9ij7nzsz7"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; + AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.50.3"; sha256="0qcxfn4pvaksna0nvxr74ysn2wzaxn732pkhd6ffrj8pwhkhy5p3"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; }; + AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.12.0"; sha256="18kh1xrhpwb48s1qj4f1v8af3jmw49pnbp5afi2myn9894hxg0cs"; depends=[GenomicRanges lazyeval]; }; + AnnotationForge = derive2 { name="AnnotationForge"; version="1.30.1"; sha256="1a2155jxbwc6qr3dcyvp850grhdr7czc7bs3s87ff4sgdl0jp3jw"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; + AnnotationFuncs = derive2 { name="AnnotationFuncs"; version="1.38.0"; sha256="1yfsxzn7s1nlc3xz2yj39j6hmdfapc9qj9h0cd71gkaxj53ial7d"; depends=[AnnotationDbi DBI]; }; + AnnotationHub = derive2 { name="AnnotationHub"; version="2.20.2"; sha256="04bz91m2wx1zm61rvpr0syyklz232fw74wrl73d965wi3x8fyda5"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; + AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.18.1"; sha256="1dmfid0wps0iy6snjb8l7ydby0k0x505slbv0sqia69y9kidggmv"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite OrganismDbi rBiopaxParser RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; + ArrayExpress = derive2 { name="ArrayExpress"; version="1.48.0"; sha256="0n8x1j4mb696lzmdl4qxjqrnxq01r8jd0jd20ykq1ifvknqfjsza"; depends=[Biobase limma oligo XML]; }; + ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.38.0"; sha256="0p9w5bwz4dp3zav9q2llkxm63i1bjrkcshil54ykzmdm3yxb64ry"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; + ArrayTV = derive2 { name="ArrayTV"; version="1.25.0"; sha256="16g862nizanjppjnyil6yv8r008qksvhxnydm4scc5q65bbnq6p4"; depends=[DNAcopy foreach IRanges oligoClasses S4Vectors]; }; + ArrayTools = derive2 { name="ArrayTools"; version="1.48.0"; sha256="1hm3sjlc6dqbq0l3sxbv4nns44nwcbf3vqachaf8rsch9jgj3iln"; depends=[affy Biobase limma xtable]; }; + AssessORF = derive2 { name="AssessORF"; version="1.6.0"; sha256="0nqjkidyhka24dfwmyvms21niryffj500s1ar4qy7knicly1vczc"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; + Autotuner = derive2 { name="Autotuner"; version="1.2.0"; sha256="02scdvvzcmih4zq1kvpwaajjmvwyqa7qqfkqjfkkncgx695pmci4"; depends=[assertthat Biobase cluster entropy MSnbase mzR RColorBrewer scales]; }; + BAC = derive2 { name="BAC"; version="1.48.0"; sha256="0342ms5mm9gj2zip10qk3313cxlvq7d9dadxbgbzpdw42bvyd20n"; depends=[]; }; + BADER = derive2 { name="BADER"; version="1.26.0"; sha256="0s1ycn9rip76p14g6l53q8jxbifnsmc8dhadqldaz881mqihv6ad"; depends=[]; }; + BAGS = derive2 { name="BAGS"; version="2.28.0"; sha256="1fky1h0cx2nk1akq09bf49b40yvh27v66mqczqsvs2p0pw487m7y"; depends=[Biobase breastCancerVDX]; }; + BANDITS = derive2 { name="BANDITS"; version="1.4.1"; sha256="080yaqpg6bkhz8azsrwbv19zfymfg2hi2x5p9hjy9b4vha0csbhd"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; + BASiCS = derive2 { name="BASiCS"; version="2.0.0"; sha256="1km2s9b35h2ypdixmyy4xscjl44dkv0q2qd69dvs5cci5nanb2g4"; depends=[assertthat Biobase BiocGenerics coda cowplot ggExtra ggplot2 hexbin KernSmooth MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 S4Vectors scran SingleCellExperiment SummarizedExperiment viridis]; }; + BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.18.0"; sha256="0dwfsp10hm5s1mgcjsc75kqvmw828x86qs7glav9h8cj6fxkjxsh"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; + BCRANK = derive2 { name="BCRANK"; version="1.50.0"; sha256="1mbqp2n1g0h3cj58a5vndcsvvmsg2ivx2gcp300dqhjwbvhzbz47"; depends=[Biostrings]; }; + BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.6.0"; sha256="02hamvyp44y0jgyvs72bjkics6wavfsz6a9q2q4d4i8w08fhj1pm"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; + BEARscc = derive2 { name="BEARscc"; version="1.8.1"; sha256="0izzczz576m5mprpzay88b11sqd9alsd6a30r85z7zj3kqsl2yvx"; depends=[data_table ggplot2 SingleCellExperiment]; }; + BEAT = derive2 { name="BEAT"; version="1.26.0"; sha256="1isda2bglylgsk388vg6mc1iwhwc1vp5il8c0g2085340wifa8l7"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; + BEclear = derive2 { name="BEclear"; version="2.4.0"; sha256="01v0mzp3frahqn235m62glmr9bjli7pmzlwjw7m3m40m9xcr45ha"; depends=[abind BiocParallel data_table futile_logger Matrix outliers Rcpp Rdpack]; }; + BGmix = derive2 { name="BGmix"; version="1.48.0"; sha256="1pfi3hinjn6ymikadgj8dqm59h7mapf01wj86dbbvf8y1xqp8y8n"; depends=[KernSmooth]; }; + BHC = derive2 { name="BHC"; version="1.40.0"; sha256="06milqjg2nl3ra47sxi7a2p2d3mbrx3wk168pqgimvs8snldd2xr"; depends=[]; }; + BLMA = derive2 { name="BLMA"; version="1.12.0"; sha256="19ndm2cp6xp5mdydqv58klbj8aijkrb6qrfh17v7qcxjjfxhq3l3"; depends=[Biobase graph GSA limma PADOG ROntoTools]; }; + BPRMeth = derive2 { name="BPRMeth"; version="1.14.1"; sha256="1sha7gbvckd7li9vc804w1lydp1jg735kz0a5sh5fzi3wzs7rjqk"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; + BRAIN = derive2 { name="BRAIN"; version="1.34.0"; sha256="1xk955fq92rrgiccbxps34mc56xl8dy9yyc4ah62lhhxccxwf84c"; depends=[Biostrings lattice PolynomF]; }; + BRGenomics = derive2 { name="BRGenomics"; version="1.0.2"; sha256="03j8mmdd6im6x611c44flha7zxq3l7cdq2g94ccgm2rqxszaz5fs"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + BSgenome = derive2 { name="BSgenome"; version="1.56.0"; sha256="1jw8r1qm9fpg2s1cw2y4np243jjxm65j2xdy2785h8fc1b02msf6"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; + BUMHMM = derive2 { name="BUMHMM"; version="1.12.0"; sha256="1baisaavlyrg83gqyzh0p0ls0bvq6darjs14ah9vpjdl7w50ngsj"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; + BUS = derive2 { name="BUS"; version="1.44.0"; sha256="0wcdjirgkc5d3xhwfjn8mnwv7aj3cac1sp7zh54k762j13jr794r"; depends=[infotheo minet]; }; + BUScorrect = derive2 { name="BUScorrect"; version="1.6.0"; sha256="0dk27psh372v0jnksf0xq2vmzc5fv26jfd9c31xbxlc0frvcgbsn"; depends=[gplots SummarizedExperiment]; }; + BUSpaRse = derive2 { name="BUSpaRse"; version="1.2.2"; sha256="031wj81p9arlrmz47qdmjc20srvnpinvd275s1g6acqq29hhk08k"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; + BaalChIP = derive2 { name="BaalChIP"; version="1.14.0"; sha256="00jkgkz7f4dnr31565yrwg6pjy80wr1xlj65z8ljirnxjpvr2zad"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; + BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.16.0"; sha256="113l9zz2a5dlwlv72hxdm6bwxqjqv7zdybnlgwiwdbc08mziy48n"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.32.0"; sha256="0c5hzf56q7nsiz316ldbafn0gg829ww6037i2miy4gprkj6s3f33"; depends=[RCurl RJSONIO]; }; + Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.24.0"; sha256="08sqiqxyc1cadwsp30sqbf9hwy45bcscf8cpaj8zp5llrbjlwhyy"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; + BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.16.0"; sha256="1f4la089chpypj1lhsazgzb3010swadk4xmaz403k8isj9winc0h"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; + BatchQC = derive2 { name="BatchQC"; version="1.16.2"; sha256="0k3ccz3rmrq27c0dn0c4yh1xqyryiwfdy95274mappsy60lhwffp"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; + BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.14.0"; sha256="0ndn6v8j526dx66j038d09jjlphx1gcdr1jbd8d0ybzqnv51zlxm"; depends=[Biobase]; }; + BayesPeak = derive2 { name="BayesPeak"; version="1.39.0"; sha256="1qzfvxp5jsp8zv9gdglmz9mf4xjl2ck4wjz2lngnjrnlxb9v6y4g"; depends=[IRanges]; }; + BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.40.0"; sha256="1k05fizqvdj4z4snp170mzj2vnaim2jy49k7wbv31fkin2xbf4bb"; depends=[]; }; + BgeeCall = derive2 { name="BgeeCall"; version="1.4.1"; sha256="1xkb5r4bhyzr5zm2zdh80ag5qymyh3pknx5nc6c68iz387rs0l09"; depends=[biomaRt Biostrings GenomicFeatures jsonlite rhdf5 rtracklayer tximport]; }; + BgeeDB = derive2 { name="BgeeDB"; version="2.14.5"; sha256="00xinj0qg83jlcd3a95xm5dwdhw5v9h26rax0ws4ngw5sc00q8fm"; depends=[Biobase curl data_table digest dplyr graph RCurl RSQLite tidyr topGO]; }; + BiFET = derive2 { name="BiFET"; version="1.8.0"; sha256="1v2dshs09iy2glzq0vwxmr83x867j844i1ixsfcamvfq33fwbbr5"; depends=[GenomicRanges poibin]; }; + BiGGR = derive2 { name="BiGGR"; version="1.24.0"; sha256="05afi6hsh1dv6lc6l0dfhvvi8k34wyzf1k1jimam7a6pbrhyy5dk"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; + BiRewire = derive2 { name="BiRewire"; version="3.20.0"; sha256="0y7jb1abnik2y4ivpyqrgfl77rml6fhz88isd54l646ghslwxj0g"; depends=[igraph Matrix slam tsne]; }; + BiSeq = derive2 { name="BiSeq"; version="1.28.0"; sha256="1hswsmd16hwz8h7nchbm0a8z9abs8cqaxdb4nv1108wd0220fc89"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; + BicARE = derive2 { name="BicARE"; version="1.46.0"; sha256="0llckbl3l26lf6wgjg7rxs8k1yrk043vvdhnkc6ncg33sydj383y"; depends=[Biobase GSEABase multtest]; }; + BioCor = derive2 { name="BioCor"; version="1.12.0"; sha256="1xghclfqv8d23g72g8914br5zjx4sz9zihzczwwmpl15lghpnqwy"; depends=[BiocParallel GSEABase Matrix]; }; + BioMM = derive2 { name="BioMM"; version="1.4.0"; sha256="1h78576qcxjv86radh5xsrf3h3zzppsig159rw9xmk5xb54aw3df"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet lattice nsprcomp pROC ranger rms variancePartition vioplot]; }; + BioMVCClass = derive2 { name="BioMVCClass"; version="1.56.0"; sha256="10d4m8ap54j85asdz5nzaz7kh1013j2smsgg2vg6llnf2znzkf58"; depends=[Biobase graph MVCClass Rgraphviz]; }; + BioNet = derive2 { name="BioNet"; version="1.47.0"; sha256="0v036i60gmff3mz1fvx2fpnb4yfj2kfp0x9fcwcbml0a3jiybad7"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; + BioNetStat = derive2 { name="BioNetStat"; version="1.8.4"; sha256="1h2bjyjcci08vm7706krrmja9dsr38aivxkgsxi7lkw7xk3j1q1j"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr pathview pheatmap plyr psych RColorBrewer RJSONIO shiny shinyBS whisker yaml]; }; + BioQC = derive2 { name="BioQC"; version="1.16.0"; sha256="1h9263ixkj4k8mjhhd66s0n933xs9w6mcsvxcpscbyn224vf2sfj"; depends=[Biobase edgeR Rcpp]; }; + BioSeqClass = derive2 { name="BioSeqClass"; version="1.45.0"; sha256="0f1ahxr9aa9iqcp166vldyqbmdzpkybszlyiwwp6h764zmf15s0g"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; }; + BioTIP = derive2 { name="BioTIP"; version="1.2.0"; sha256="07s90lb78sw7kp4sbhi9x9vww3bm2jalddwcdxrif7kmpvb5raqq"; depends=[cluster GenomicRanges Hmisc igraph MASS psych stringr]; }; + Biobase = derive2 { name="Biobase"; version="2.48.0"; sha256="13p3kgnxm7hbn8cy289kbhaiyfa6rxx7l1pbvajwqzbay3cxznqp"; depends=[BiocGenerics]; }; + BiocCaseStudies = derive2 { name="BiocCaseStudies"; version="1.50.0"; sha256="0fadck1dk1zavpn9yrcwx6zgfi18fw5xfs8svgzipns6bq41j8ix"; depends=[Biobase]; }; + BiocCheck = derive2 { name="BiocCheck"; version="1.24.0"; sha256="1p9ys18sn1crxw1iac2jdgqvwpb5hjd9nfxx0qn0ncrv0b550mny"; depends=[BiocManager biocViews codetools graph httr knitr optparse stringdist]; }; + BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.0.1"; sha256="0c9h2w1ds82vk3sj50j65xa0j1007la39s5jhc3kpzw9hw5dsmky"; depends=[dplyr httr readr whisker]; }; + BiocFileCache = derive2 { name="BiocFileCache"; version="1.12.1"; sha256="02yayjyliaqxcwqa0n2ccmsfflskqzf0gvdibh2r3nz5bi66imkf"; depends=[curl DBI dbplyr dplyr httr rappdirs RSQLite]; }; + BiocGenerics = derive2 { name="BiocGenerics"; version="0.34.0"; sha256="15nvqyh2gx5zkn1krbs5c4rhw5642bijdfsf2rgic70gzr05cksk"; depends=[]; }; + BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.6.0"; sha256="14cyyrwxi82xm5wy6bb1176zg322ll67wjrw9vvi4fhfs1k4wqxy"; depends=[BiocParallel Matrix Rcpp RcppAnnoy RcppHNSW S4Vectors]; }; + BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.8.0"; sha256="021qzygfwdnd3naz1iqq01zr3zxv3k7wm1lklik24vc7axshxbmk"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; + BiocParallel = derive2 { name="BiocParallel"; version="1.22.0"; sha256="1lsg5xm5j3ly5k60fidzhkgqc9jgscyfkqngjvd9qp6yfzvsb82g"; depends=[BH futile_logger snow]; }; + BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.6.0"; sha256="0l5fvi1m4834n4h0iswbap135s9mpaiabw9czzn1r72ssz86vrcr"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr rappdirs RBGL readr rex rlang rvest stringr tibble tidyr tidyselect xml2]; }; + BiocSet = derive2 { name="BiocSet"; version="1.2.2"; sha256="041hq3rp0kv7kjwcjjrksk8lw3sj6j1v3wdcr8z611k0g0z6p0cj"; depends=[AnnotationDbi dplyr KEGGREST plyr rlang rtracklayer tibble]; }; + BiocSingular = derive2 { name="BiocSingular"; version="1.4.0"; sha256="0368a9xj4cvicqkxmhh12ln46q9gnxla70s1dqrxxfn3b6k525ih"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors]; }; + BiocSklearn = derive2 { name="BiocSklearn"; version="1.10.3"; sha256="11vv7b10q2az0l60d572sriyf37xcvm65yaw4i6bwjx7cpy5ch2v"; depends=[basilisk knitr Rcpp reticulate SummarizedExperiment]; }; + BiocStyle = derive2 { name="BiocStyle"; version="2.16.0"; sha256="07rjl2n4sazdg581zh7w3yykzphgr2gpz41ba4ryqs7347vh9nbf"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; + BiocVersion = derive2 { name="BiocVersion"; version="3.11.1"; sha256="1rrzx3dqds0jlj1bmjc744wiamb2hssbh3jfxz1s9jp4cvnwrpmz"; depends=[]; }; + BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.14.0"; sha256="0p9r71ql67sdlgd5pv118lhz8b85pr5y4ijfwzcy8wrr8jwlbddy"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; + Biostrings = derive2 { name="Biostrings"; version="2.56.0"; sha256="0imhfz7dg8b3l5qzipjranqqshdsg2x6zc49drlhn8sc7j40cvi8"; depends=[BiocGenerics crayon IRanges S4Vectors XVector]; }; + BitSeq = derive2 { name="BitSeq"; version="1.32.0"; sha256="012h07kr08y95p2swhnsm6f8cajnwps8vg598w93zs8pfxnrxkax"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; }; + BrainStars = derive2 { name="BrainStars"; version="1.32.0"; sha256="0j6ak2c13y1xb5g8gq2xqs8rlvw9wc96v8kqx5vr0q0fqyp1xrg2"; depends=[Biobase RCurl RJSONIO]; }; + BridgeDbR = derive2 { name="BridgeDbR"; version="1.22.0"; sha256="16qfznf8bb6zdvl55vbm06vdqpv1f87s07s08zbj513vl8ccwzqh"; depends=[curl rJava]; }; + BrowserViz = derive2 { name="BrowserViz"; version="2.10.0"; sha256="0mrq8r6nvvardixgid6vr2vlzsxsmp1jb9m0g4h9x6kz4iwdr8h2"; depends=[BiocGenerics httpuv jsonlite]; }; + BubbleTree = derive2 { name="BubbleTree"; version="2.18.0"; sha256="01ja6lmqdla08v6lnafxw3ngibbr7aqvalc1h0mwlwnv7chrk0bv"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; + BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.52.0"; sha256="1p5mirc2scd4j1888zm641ajm35hlls27a07zgmvg5kbxv2pc6j7"; depends=[]; }; + BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.52.0"; sha256="0hdvlgyfdz50qmgg2i0axl4gaims3jyx8h5j9d8gj261wrig9jrk"; depends=[BufferedMatrix]; }; + CAFE = derive2 { name="CAFE"; version="1.24.0"; sha256="1d7wsvxpigjs8pkx5zj7kbc3m2rkagfc0nnmcmal4v5z4ryg39n8"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; + CAGEfightR = derive2 { name="CAGEfightR"; version="1.8.0"; sha256="17p9ivsz5014ya2vkfg7bpknn0jwc2zh2qqd27s70l14797d1gy0"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; + CAGEr = derive2 { name="CAGEr"; version="1.30.3"; sha256="0xd2x5wfj84mlzzfams184ifsyq80jlj50jcih67x9pyhgdd1rwz"; depends=[beanplot BiocGenerics BiocParallel BSgenome data_table DelayedArray formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; + CAMERA = derive2 { name="CAMERA"; version="1.44.0"; sha256="007zcd795iwc7ywgly6l8835ayw64g58d4mkfg1w3afrc3gw29xy"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; + CAMTHC = derive2 { name="CAMTHC"; version="1.6.0"; sha256="12gnk89y1dsdpahma2n5b5g7zzda576b8zdrcl9dbawbhs9ccx87"; depends=[apcluster Biobase BiocParallel corpcor DMwR geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; + CARNIVAL = derive2 { name="CARNIVAL"; version="1.0.0"; sha256="1i06kz12m3zm6y3zz8n572i89f1iirc7py0nz5d614829j7f79sr"; depends=[AnnotationDbi Category doParallel ggplot2 igraph lpSolve readr UniProt_ws viper]; }; + CATALYST = derive2 { name="CATALYST"; version="1.12.2"; sha256="1m6cqv0h75bzw3gd9dq72y4iyk8clp894an5dzws6gr5vcd1vl8j"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; + CAnD = derive2 { name="CAnD"; version="1.20.0"; sha256="1gh5l8bw6ilc0gq24sqgaghp7q54fx0834mzd837ppshz3bd9vkf"; depends=[ggplot2 reshape]; }; + CCPROMISE = derive2 { name="CCPROMISE"; version="1.14.0"; sha256="18zs0nrarzw5xfs3q2zknf81dcjphwmiqlfim5rlnz6icp53prrp"; depends=[Biobase CCP GSEABase PROMISE]; }; + CEMiTool = derive2 { name="CEMiTool"; version="1.12.1"; sha256="1dx0z9z89p741bg6w9ay1bbz9db1nzaama1fz4yilw68yj151i18"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; + CFAssay = derive2 { name="CFAssay"; version="1.22.0"; sha256="0kdv5i6cm63yjai2xg25y1mq0728drwnqs8r9vx3k7djxrkx8ad7"; depends=[]; }; + CGEN = derive2 { name="CGEN"; version="3.23.0"; sha256="0m40xq2ixdkdhq4fpi8bw0p2y2p1vln40ly0iixjyl33z2zpyrrj"; depends=[mvtnorm survival]; }; + CGHbase = derive2 { name="CGHbase"; version="1.48.0"; sha256="0gfqqa9rs5hid53ihlky88qndgrwxxz0s6j7s505f660dd5nzlkf"; depends=[Biobase marray]; }; + CGHcall = derive2 { name="CGHcall"; version="2.50.0"; sha256="1dz6sag8khl18vkb97b5w6fk6k9s7s9xxnc467dd3bmhmajlmrrg"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; + CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.42.0"; sha256="0407h3dph05wj4wx6ysfar2gl39rzr9ks3pjvz98pjv7m1ink4hk"; depends=[Biobase CGHbase CGHcall]; }; + CGHregions = derive2 { name="CGHregions"; version="1.46.0"; sha256="1l2kl14g70yigqkxdhgvbrpa7a28fizmn24wh723zma6akg36n7j"; depends=[Biobase CGHbase]; }; + CHARGE = derive2 { name="CHARGE"; version="1.7.0"; sha256="12332d9a5f0vcj8rs0nh61n2hi1ihjipbdk3gwcq0adaacap1vg4"; depends=[cluster diptest factoextra FactoMineR GenomicRanges IRanges matrixStats plyr SummarizedExperiment]; }; + CHETAH = derive2 { name="CHETAH"; version="1.4.0"; sha256="1rkhgq34wxzqch1b5vgg0r1n9h0xz3qqmq088di4pnh5pccwg58g"; depends=[bioDist corrplot cowplot dendextend ggplot2 gplots pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; + CHRONOS = derive2 { name="CHRONOS"; version="1.16.0"; sha256="0k037q0qdny93hqhzmb58smm2alppq4lkm4vg6aiykcsv14slpwh"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl XML]; }; + CINdex = derive2 { name="CINdex"; version="1.16.0"; sha256="0wirzhm542k8i02p2sygqs9misaxkymk660qzn7i13dc119yn8zg"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; + CMA = derive2 { name="CMA"; version="1.46.0"; sha256="0al1zbmc99gch3wyhdvjlk860vsb9zrwnkgv1s24fgx6pjg1180w"; depends=[Biobase]; }; + CNAnorm = derive2 { name="CNAnorm"; version="1.34.0"; sha256="18w4gfqpdpv4zca9ahbdx6lgbyzaphm336w394lk3mwll89zanm1"; depends=[DNAcopy]; }; + CNEr = derive2 { name="CNEr"; version="1.24.0"; sha256="0l2hmaanlzb2z967piv7bybv1sxgix5ywvqqsvlvag3mxda6y706"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; + CNORdt = derive2 { name="CNORdt"; version="1.30.0"; sha256="1lz25x67g3vy1s31sr3rgq0qcsp9km0wxjib3n2s18vq7xjhlqh2"; depends=[abind CellNOptR]; }; + CNORfeeder = derive2 { name="CNORfeeder"; version="1.28.0"; sha256="0bf5d3lzi596lj3x7mpjp43zw2vdnprfjg1anb8z5qzzk546vwhd"; depends=[CellNOptR graph]; }; + CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.30.0"; sha256="0x12kspgmmpp08k7z22bpih2ih4lzg58jl4rpmrhg6li19k66zm9"; depends=[CellNOptR nloptr]; }; + CNORode = derive2 { name="CNORode"; version="1.30.0"; sha256="0mc0skz87zw9xa0sfl27jdfzmvxqd4rdn8951qcwi34wi32f85qg"; depends=[CellNOptR genalg]; }; + CNTools = derive2 { name="CNTools"; version="1.44.0"; sha256="1npjk7j0nbj68cshas1d0xrz116jvanj5zpq3sxi72rymx7jpq87"; depends=[genefilter]; }; + CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.20.0"; sha256="18q281kkazv2gw02hlmklqp65xzf27ls24cxy5ihblc8c8jxnms2"; depends=[exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; + CNVRanger = derive2 { name="CNVRanger"; version="1.4.3"; sha256="0f9sylaj0ydjygcgv8bhrfah1rd8022wd7fzkvm4v7s74rfj0gcy"; depends=[BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; + CNVfilteR = derive2 { name="CNVfilteR"; version="1.2.0"; sha256="1sy63x1sh9n2hfx45w3sgnqlw0gzh4qd5qjaj0cz4shnlzm344w2"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; + CNVrd2 = derive2 { name="CNVrd2"; version="1.26.0"; sha256="09ykzhkyyamlizi7w3hvqdbl37mps48pabgjgncwmzchg4wmsqlv"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; + CNVtools = derive2 { name="CNVtools"; version="1.81.0"; sha256="0692qqaymrhx510prqr2qpwnx2yaahxngg485dnsaqbjlkgbz5l4"; depends=[survival]; }; + COCOA = derive2 { name="COCOA"; version="2.2.1"; sha256="1cxa8j4yd9shdvy6ljpph97px1gafv0yflv3g6ijzq4z095xdzip"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; + CODEX = derive2 { name="CODEX"; version="1.20.0"; sha256="1vgv9q0ijhj6l9llnp7464427gg8dfccg9w53brw3ky49x38fs5d"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; + COHCAP = derive2 { name="COHCAP"; version="1.34.1"; sha256="1r8lk6b4wqpxma1kdxlpb56fbxbycrinv1dazrq4i5c2ralc7gjc"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; + COMPASS = derive2 { name="COMPASS"; version="1.26.0"; sha256="02fapj6xc254hvzcm3nv42xlxq1jiwca0mrgmzhxpibh24v7i5lv"; depends=[abind BiocStyle clue data_table dplyr knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; + CONFESS = derive2 { name="CONFESS"; version="1.16.0"; sha256="0xl41nc8az0dwn0ywnbriv32bxy65ppmbb1g4l5hbmnaqyas437m"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; + CORREP = derive2 { name="CORREP"; version="1.54.0"; sha256="0lz3ygjk1hx1d284jg364c317s7nzgsdjvj33s77av1y41vdjj39"; depends=[e1071]; }; + COSNet = derive2 { name="COSNet"; version="1.22.0"; sha256="1dyczgbnphhzxcc98qmfrqxgv3nql2rn0vnh5f5ypjhgpysg56yz"; depends=[]; }; + CRISPRseek = derive2 { name="CRISPRseek"; version="1.28.0"; sha256="0q3vsxq0997y95ym22wbdfp6xm214fxjcg4gzvgnm8y75qpm3dyi"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges S4Vectors seqinr]; }; + CRImage = derive2 { name="CRImage"; version="1.36.0"; sha256="0fp3fspfmjb50iz5sfyn3jpxw2chlrdyh21126v7r3bwdw31myfc"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; + CSAR = derive2 { name="CSAR"; version="1.40.0"; sha256="10d60ylbwzpczy9by3ba5x4z798zg4hyhma99aav2x4q79laq6rk"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + CSSP = derive2 { name="CSSP"; version="1.26.0"; sha256="089a0rmb8i9p1ay9mqyph865gni2fzr9sr18mdivnznxxxvd6v3n"; depends=[]; }; + CSSQ = derive2 { name="CSSQ"; version="1.0.5"; sha256="0vwhd2k86fnkvws8vafkz6mxchlchxicviqdmnlvwb516nslavlb"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + CancerInSilico = derive2 { name="CancerInSilico"; version="2.8.0"; sha256="1whhxsay42dcz8b0xrpd9r4i7x1ybk8x016y2sm8nk48g0p7xczy"; depends=[BH Rcpp]; }; + CancerMutationAnalysis = derive2 { name="CancerMutationAnalysis"; version="1.30.0"; sha256="0vq4p5nkymzn4q37lpmkfc886r13za7pypl58nklkfhhj3d3241x"; depends=[AnnotationDbi limma qvalue]; }; + CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.14.0"; sha256="0hr3ilh64sv9rbx010bpw3bm20sbq6frp4za8fq0qh54cbj7hr69"; depends=[cluster ConsensusClusterPlus iCluster impute limma NMF sigclust SNFtool survival]; }; + Cardinal = derive2 { name="Cardinal"; version="2.6.0"; sha256="15l3ra6r45ppj49yapzrk9js92znnsfsvisvrdh8q177dvr9i64z"; depends=[Biobase BiocGenerics BiocParallel dplyr EBImage irlba lattice magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal sp viridisLite]; }; + Category = derive2 { name="Category"; version="2.54.0"; sha256="1grspdzk5a4vidnxwcd1jmy1vcn494aydsp3vydx235yv7iqac1b"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; + CausalR = derive2 { name="CausalR"; version="1.20.0"; sha256="189qvw32ih926k1fvhjb8bj0rfdmrijip5j8vsvx7v1mh7xk4kvx"; depends=[igraph]; }; + CeTF = derive2 { name="CeTF"; version="1.0.6"; sha256="1is1vjrbnm15wvzag2jpl26j7mpwwc0qgrm45k7zxnawb7bgk0w4"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 GenomicTools GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment WebGestaltR]; }; + CellBench = derive2 { name="CellBench"; version="1.4.1"; sha256="0b854k76459gplbibc9dl9mmcspnn6cp2b0dipi6k7cm48vcv67x"; depends=[BiocFileCache BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; + CellMapper = derive2 { name="CellMapper"; version="1.14.0"; sha256="04rv1xr4kdz85s1178jcai1047f3ah67clargmxw3qzb49q999db"; depends=[S4Vectors]; }; + CellMixS = derive2 { name="CellMixS"; version="1.4.1"; sha256="1zhxay1injsciz0sdkay9i444zlyz1v7hxr1sg3jnnlzr6cblk18"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; + CellNOptR = derive2 { name="CellNOptR"; version="1.34.0"; sha256="16fs4baafwf3mg99386l3kgwzzpf5cqxv1ib3dsv0hldz8n95zkg"; depends=[ggplot2 graph hash igraph RBGL RCurl Rgraphviz stringi stringr XML]; }; + CellScore = derive2 { name="CellScore"; version="1.8.0"; sha256="15j8cgpvkvw6hyah6437lqrlqfspzdqs71v162s0sqmfk501b9g3"; depends=[Biobase gplots lsa RColorBrewer squash]; }; + CellTrails = derive2 { name="CellTrails"; version="1.6.1"; sha256="1gf5m553vgsh216s7dgg7dawlzkaibqwmmnd5ra31gj720f47ilh"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; + CexoR = derive2 { name="CexoR"; version="1.26.0"; sha256="1vlb38msz8hc5xy3w9an3vlv70yxh8ryy0rshn4ghjamcbfiv9qz"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; + ChAMP = derive2 { name="ChAMP"; version="2.18.2"; sha256="08ix46pakcrxyh3y0kg2jr0v5hfn4b51r7zvnnkl5a2q3x30ml73"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT FEM GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; + ChIC = derive2 { name="ChIC"; version="1.8.0"; sha256="1lc21gjw8g6plgbcv7m13wfd8lczmh1zdllfxah2cxzzvkdswgpv"; depends=[BiocGenerics caret caTools ChIC_data GenomicRanges IRanges progress S4Vectors spp]; }; + ChIPComp = derive2 { name="ChIPComp"; version="1.18.0"; sha256="0780kj9vbzdhf2jkfb1my8m58pcdwk6jqw6zfng82g46jias98cp"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; + ChIPQC = derive2 { name="ChIPQC"; version="1.24.1"; sha256="13znqva6xn2qn9c11kf3ghycb1hck0rzk300bp08zw64mk1nh6v5"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; + ChIPSeqSpike = derive2 { name="ChIPSeqSpike"; version="1.8.0"; sha256="0z57dmzfa2jjaxi3pz2yzfgkra5i8gbi50w579m35s1q3rrisyln"; depends=[BiocGenerics corrplot GenomicRanges ggplot2 IRanges LSD Rsamtools rtracklayer S4Vectors seqplots stringr]; }; + ChIPXpress = derive2 { name="ChIPXpress"; version="1.32.0"; sha256="0xb8p0ap0kmj53skp7bm151lmf6cdwlyv18jaji7lcsrvnni3ilm"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; + ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.10.0"; sha256="0wxq7w95gxvb9wjm2amh37hvnbsy1cikyzdh8aa7a21nr71jp8km"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RcppRoll ROCR rtracklayer S4Vectors]; }; + ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.12.0"; sha256="02rsf1rvm0p6dn18zq2a4hpvpd9m2i5rziyi4zm8j43qvs8xhafp"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; + ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.22.2"; sha256="199mlg0gwjy39afyk0ah6lzcm759bzxla4hgcajj0ay9jiibjqpa"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager biomaRt Biostrings BSgenome DBI DelayedArray ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GO_db graph idr IRanges limma matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors seqinr SummarizedExperiment VennDiagram]; }; + ChIPseeker = derive2 { name="ChIPseeker"; version="1.24.0"; sha256="04lvw4bglab7vrhz5frn8vvp311dhr19ff2r97l1qharh22bnyq2"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + ChIPseqR = derive2 { name="ChIPseqR"; version="1.42.0"; sha256="1r60ia052wlkmvjlfwagfnnx4kzgmh91b8na3g7wn05fl708nyzl"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; + ChIPsim = derive2 { name="ChIPsim"; version="1.42.0"; sha256="12v77hzh9d5iz4byn80qlsssj5vgyhhmd0xfbcczjw1hv81iizxq"; depends=[Biostrings IRanges ShortRead XVector]; }; + ChemmineOB = derive2 { name="ChemmineOB"; version="1.26.0"; sha256="1507fqhdw3zm5yi8zg8wbvf2nymyvg72qwsj2m11q42xsy6czns2"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; + ChemmineR = derive2 { name="ChemmineR"; version="3.40.0"; sha256="0cna5xsqflvhlp2k47asxyv3w4ympmz2wy2cwjyzlal6936fjikf"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra png Rcpp RCurl rjson rsvg]; }; + Chicago = derive2 { name="Chicago"; version="1.16.0"; sha256="1x8rv9132yasb0nda80b0cig0ylbbzbwhjxyf8wmvk6fxpar1wbr"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; + ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.42.0"; sha256="0zwqpsnl2zwibv0l4dqp28w3c2f53l73hz1vh0mcrg43lr7p2cx8"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; + CiteFuse = derive2 { name="CiteFuse"; version="1.0.0"; sha256="1arf69yk6zkijq0pinh8w3vgxp4qdg5bsc8f3s7417r95p998141"; depends=[cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap propr randomForest reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SNFtool SummarizedExperiment uwot]; }; + ClassifyR = derive2 { name="ClassifyR"; version="2.8.0"; sha256="1gdxj4gccbl8w82piyvkkg5dgwdjyqnbyy4rjxrxw8ngri0rrd6q"; depends=[BiocParallel locfit MultiAssayExperiment plyr S4Vectors]; }; + Clomial = derive2 { name="Clomial"; version="1.24.0"; sha256="0wgl5ys4csiphixl105sfn61vzphyvans4qsnl81x8hn9q34m85q"; depends=[matrixStats permute]; }; + Clonality = derive2 { name="Clonality"; version="1.36.0"; sha256="1y648saal9h3jfkgafb1r0n2g5ikn78cw0kv5q29181g378vvjjv"; depends=[DNAcopy]; }; + CluMSID = derive2 { name="CluMSID"; version="1.4.0"; sha256="0j4qfw32qyawama0b1vrc3s51jik5dgi46q1xxhxfcv6p40zkbxm"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; + ClusterJudge = derive2 { name="ClusterJudge"; version="1.10.0"; sha256="0gfy9153nr7wsjxp2w4n79bp6zm2wb49kvw0kg9zqmbla39v0m6j"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; + ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.16.0"; sha256="04i1nqnm5npmsddbbswvf5w4v0299p9rb8b5vn83q0vpm09ls62q"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; + CoCiteStats = derive2 { name="CoCiteStats"; version="1.60.0"; sha256="1spf00zp8sd33i5v7b2yq3x49mx7xji05d69zhr719qayg76gyp4"; depends=[AnnotationDbi org_Hs_eg_db]; }; + CoGAPS = derive2 { name="CoGAPS"; version="3.8.0"; sha256="04x9phnx1awbikz7qd96z9q0m29cv0ylksshzw5b86sxccf3yzaf"; depends=[BiocParallel cluster gplots RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + CoRegFlux = derive2 { name="CoRegFlux"; version="1.4.0"; sha256="1842156h0xbjz98i9402rawkxivq152ccaz3cwrf8p9c21315j1i"; depends=[CoRegNet sybil]; }; + CoRegNet = derive2 { name="CoRegNet"; version="1.26.0"; sha256="0d9byjgsrbjingi58zd8s7w2n1lcxyzd1irpcd6iaqxxawgqjaxn"; depends=[arules igraph shiny]; }; + CompGO = derive2 { name="CompGO"; version="1.24.0"; sha256="02f6ka4m1mz2mmms2g8d57g2rnb7g4gm8ax19i37nya9x3ggzjcr"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.4.3"; sha256="1gx0hzrkla92pgmfkrm2zp0ccnhizq6rs26zgzpi5x8a5lvghh5q"; depends=[circlize clue colorspace GetoptLong GlobalOptions png RColorBrewer]; }; + ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.52.0"; sha256="06gq3a95h0km1hzbx1za8q0l7kla3jdzvn6cnfz43ijx4n3dzzcq"; depends=[ALL Biobase cluster]; }; + CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.4.0"; sha256="1jbawn0kdyh5jyxapw5d9yc49k8yx6ngx3hxfrm3gp2pxwpa3sgg"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; + CopywriteR = derive2 { name="CopywriteR"; version="2.20.0"; sha256="0c36wpv0rygkbqpf3dwh5xmc3lr7p8lrdzsq2fbbpw04skl6i7m2"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; + CorMut = derive2 { name="CorMut"; version="1.29.0"; sha256="0jbmwwi1f7h2zm3irs5igqpzgs05khk1r3fy460wxj05f0g366gr"; depends=[igraph seqinr]; }; + CoreGx = derive2 { name="CoreGx"; version="1.0.2"; sha256="1p8v42ljh7y3iy5krjmvvf7cxl7z064inij19s30dfaahfv77x2a"; depends=[Biobase BiocParallel lsa piano S4Vectors SummarizedExperiment]; }; + Cormotif = derive2 { name="Cormotif"; version="1.34.0"; sha256="1wn8c7rrmmc1mamy1ya7bvpg24g47fr9q8xdddvnzwvbcbxiqpwf"; depends=[affy limma]; }; + CountClust = derive2 { name="CountClust"; version="1.16.0"; sha256="123lsadhi7ny5qkkgf543d3s6l22wm63s76y85z3ij5awgwzr9mf"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; }; + CoverageView = derive2 { name="CoverageView"; version="1.26.0"; sha256="1fcz7pkffz5l3jdxb9glji2zdmr6nx67h6vfpr2yi8n3slg2hrrj"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + CrispRVariants = derive2 { name="CrispRVariants"; version="1.16.0"; sha256="0jlp7wdrl9ih77iya9kwjfr4vr84xdcxxg6dj8c7lk9bhd41r6xr"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; + CrossICC = derive2 { name="CrossICC"; version="1.2.0"; sha256="1ilfgmrpr85i0x6grhjlrb3gq74hnjlvsmz0af41ajvnz9mbh6s0"; depends=[Biobase cluster ConsensusClusterPlus data_table dplyr limma MASS MergeMaid]; }; + CytoDx = derive2 { name="CytoDx"; version="1.8.0"; sha256="052k8p47kdqvidw28qzp6x1g599crlx15wakz17ja6067drs5axx"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; + CytoML = derive2 { name="CytoML"; version="2.0.5"; sha256="174brv027mm90lydfg6hnhazwh8jy4vf6ial4hpsfalwa5jrz55n"; depends=[base64enc BH Biobase corpcor cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite lattice openCyto plyr RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib RUnit tibble XML xml2 yaml]; }; + DAMEfinder = derive2 { name="DAMEfinder"; version="1.0.2"; sha256="18ydik1xapv8zan7qcrfx0c68n4ddh60ik9d1zq456nsmgysy71l"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; + DAPAR = derive2 { name="DAPAR"; version="1.20.2"; sha256="1c1vs8pxvgnvgf2i6pln4bp5jw3p9zjkjcq2220q1ld65cwfgdp0"; depends=[AnnotationDbi Cairo clusterProfiler cp4p DAPARdata doParallel dplyr factoextra FactoMineR foreach ggplot2 gplots graph highcharter igraph imp4p impute knitr lattice limma lme4 Matrix MSnbase norm openxlsx pcaMethods png preprocessCore RColorBrewer readxl reshape2 scales siggenes stringr tidyr tidyverse tmvtnorm vioplot visNetwork vsn]; }; + DART = derive2 { name="DART"; version="1.36.0"; sha256="1gjhhxyypaza598f51cvyn5564m5dgli6v3cl6rqmh9qzil482hv"; depends=[igraph]; }; + DBChIP = derive2 { name="DBChIP"; version="1.32.0"; sha256="16zzgbfnnvjissnzg8lqsy60kpivjwyfzh1zp7b4bhzmfw8awwqy"; depends=[DESeq edgeR]; }; + DChIPRep = derive2 { name="DChIPRep"; version="1.18.0"; sha256="0xpafzd8xdcqjnn4i8iv819240rnvi4wbwwlzn8kb76cdqn6299x"; depends=[assertthat ChIPpeakAnno DESeq2 fdrtool GenomicRanges ggplot2 plyr purrr reshape2 S4Vectors smoothmest soGGi SummarizedExperiment tidyr]; }; + DECIPHER = derive2 { name="DECIPHER"; version="2.16.1"; sha256="14pzhh98494ysnbs033p86hslwc2v172fj5161afrsvjskzbi1ay"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; + DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.8.0"; sha256="0r794dsvwsirv5wgk4xrcndq45axnrvmlm4h8kv58zl9v2ydhyf2"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; + DEFormats = derive2 { name="DEFormats"; version="1.16.0"; sha256="174c54dlf4g620gmvvbycp5hkynpk68b4njw0n6h87dxw11ammfr"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; + DEGraph = derive2 { name="DEGraph"; version="1.40.0"; sha256="0lxqmpdpdwp6fz3bc5gmsdrlsjm2123469qlf5bkf0agy084d04j"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; + DEGreport = derive2 { name="DEGreport"; version="1.24.1"; sha256="1zxh3pn7nqh5dc6c77gn5sbj8qihrl2i2w41frb9ji9c1mcphcqj"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr lasso2 logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; + DEGseq = derive2 { name="DEGseq"; version="1.42.0"; sha256="1z5a60bk29dv0rwgzjvi2v7rlhhsqw8qc2fn3pkngbcxwmnapabi"; depends=[qvalue]; }; + DEP = derive2 { name="DEP"; version="1.10.0"; sha256="1zw4k65bp2fp9zbrarc5jm9s4dyiqhlb8hwmiwjv38gy4v5m0wwc"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; + DEScan2 = derive2 { name="DEScan2"; version="1.8.0"; sha256="0v8irww2k3rcxzx0sw2g6srbj3z0akmnmdrrv0pfv8x78v076rxg"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; + DESeq = derive2 { name="DESeq"; version="1.39.0"; sha256="047hph5aqmjnz1aqprziw0smdn5lf96hmwpnvqrxv1j2yfvcf3h1"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; }; + DESeq2 = derive2 { name="DESeq2"; version="1.28.1"; sha256="0xh12c2skr0bbv893p05gvbismkcnqw8zwh7yz4wmycgajfzg2pp"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; + DEWSeq = derive2 { name="DEWSeq"; version="1.2.0"; sha256="1my496mghbvpzd5gfw6x7arjj2v1svzvgma3h825k7gf0z5jqg15"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; + DEXSeq = derive2 { name="DEXSeq"; version="1.34.1"; sha256="1m03awaw06mfv5gszq23k5apsqqzjqa5rcwp20y4xbpl7bywpsyl"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; + DEqMS = derive2 { name="DEqMS"; version="1.6.0"; sha256="0p5qlkp7rvjf2634mh3526miryrxshk6ivlri5l96381xzylrgrw"; depends=[ggplot2 limma]; }; + DEsingle = derive2 { name="DEsingle"; version="1.8.2"; sha256="0sfflsbhngz4jq5riwqdmsgj90a62jzvpgc5jv5pipxz2h35k2q7"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; + DEsubs = derive2 { name="DEsubs"; version="1.14.0"; sha256="1wrhh1235bp9k321mwm81biqbqjsz2bf1g39m6zkkjd5iqwv16xp"; depends=[circlize DESeq DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; + DFP = derive2 { name="DFP"; version="1.46.0"; sha256="1yqgyp69rdw99fg3xxdgyr7sf2vdzyxhvnwnys21lscsh41235x4"; depends=[Biobase]; }; + DIAlignR = derive2 { name="DIAlignR"; version="1.0.5"; sha256="0gdq3cbki2a3bhq1ipd1cixqdml23dgi0icli3qv4vdrk932bq8d"; depends=[DBI dplyr ggplot2 gridExtra mzR Rcpp rlang RSQLite scales signal tidyr zoo]; }; + DMCFB = derive2 { name="DMCFB"; version="1.2.0"; sha256="06c1xw3hmp5ibfn9ws71b1hj6da2lswgz5g6kgjlxzg7nm87y6zw"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; }; + DMCHMM = derive2 { name="DMCHMM"; version="1.10.0"; sha256="1zyjpimvgsimz1xb4i9mc79yl9cj5ivqzc1rlvdpmisb1zls89q9"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; + DMRScan = derive2 { name="DMRScan"; version="1.10.0"; sha256="09rdmd0x5rhysxvipdnvfhp7y5l9n3r8b5xqn8dz96pfdddli8nm"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; + DMRcaller = derive2 { name="DMRcaller"; version="1.20.0"; sha256="0an24sa3d760d6pp2z5dclammmqys0snbx41rlcgb0yhljv5bja5"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; + DMRcate = derive2 { name="DMRcate"; version="2.2.2"; sha256="1991mwka0ajazwxszlnbbmr928i1q5fdl6hr7x0z4a5faymn3m3n"; depends=[bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; + DMRforPairs = derive2 { name="DMRforPairs"; version="1.24.0"; sha256="0fxsf7m0ks9ycx7nnyi4v7qr5lcgab8ayfvl1bk763wy77nipaiq"; depends=[GenomicRanges Gviz R2HTML]; }; + DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.4.0"; sha256="0l9q3c12lramf4pdbv58hcmyv3d8j082l17aqjpyjvabla4zk8yc"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; + DNABarcodes = derive2 { name="DNABarcodes"; version="1.18.0"; sha256="03y39hjpkb05fnawy3k797bph1iydi1blmpgyy4244zjgk6rs5x7"; depends=[BH Matrix Rcpp]; }; + DNAcopy = derive2 { name="DNAcopy"; version="1.62.0"; sha256="0jg8lr83drzfs5h73c7mk7x99vj99a2p2s1sqjc4gicn927xvhza"; depends=[]; }; + DNAshapeR = derive2 { name="DNAshapeR"; version="1.16.0"; sha256="12blxm5x9x3z6ac9vfachsfz18dqmm1qb5vzs1v9v3pbwfmf0l0r"; depends=[Biostrings fields GenomicRanges Rcpp]; }; + DOSE = derive2 { name="DOSE"; version="3.14.0"; sha256="1j0wcg7w2ns3ag9d272cqlg3j62ag2xnc5gfsjl6g2ij5xkvylb8"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2]; }; + DRIMSeq = derive2 { name="DRIMSeq"; version="1.16.1"; sha256="0jmgizygbxqnzsjm81gq2dnr2ijncfda7agpzd0bhvsy7s8wl6cm"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; + DSS = derive2 { name="DSS"; version="2.36.0"; sha256="04ypp7mcjiwz0ny86v3rfp3mdj4sl3i2cpqvy0f84nqyxgv4vd0j"; depends=[Biobase BiocParallel bsseq DelayedArray]; }; + DTA = derive2 { name="DTA"; version="2.34.0"; sha256="083g37ygrs0n07dp4lf7i8lq5496lyh42dksf1ymbyimgm1d5vyj"; depends=[LSD scatterplot3d]; }; + DaMiRseq = derive2 { name="DaMiRseq"; version="2.0.0"; sha256="0vkygvrv18an74697h4ipym1ng3s3ffmnpjrn0qqm41mvvajy14j"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; + DeMAND = derive2 { name="DeMAND"; version="1.18.0"; sha256="0p420ywmwjqz6j1ym5fqv2gplzl4j2wv12iz6hfzfv53x0wsgm8k"; depends=[KernSmooth]; }; + DeMixT = derive2 { name="DeMixT"; version="1.4.0"; sha256="13vra0y77yb0zm2g4pxw0x1kijjrx48m654x0qffb4n2ai5mkpdg"; depends=[base64enc ggplot2 KernSmooth knitr matrixcalc matrixStats Rcpp SummarizedExperiment truncdist]; }; + DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.30.0"; sha256="0sm3p1x5nknvjbck93ixgcvsj7f43rdq8lzhi99aghbb4vz206sz"; depends=[ggplot2 limSolve pcaMethods]; }; + DeepBlueR = derive2 { name="DeepBlueR"; version="1.14.0"; sha256="096gqprr5dy1lhw5wck7r9dmy0iw5qx9gm4k53k44wjgk9bz42ph"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; + DelayedArray = derive2 { name="DelayedArray"; version="0.14.1"; sha256="0xi0i621hrl7k9rsc8x8nc3ib74sk8hxhbyr2lxqclw45pk95s7v"; depends=[BiocGenerics IRanges Matrix matrixStats S4Vectors]; }; + DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.4.0"; sha256="1wipxplcgzhglrgjnwb7f3n2acrf40qv8nb02im233ixyb7r4l3c"; depends=[BiocGenerics DelayedArray S4Vectors]; }; + DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.10.1"; sha256="046sam0rz42ph0m7jz7v3bck7d3h2mp45gzywh5dvc1qkjq6fdxx"; depends=[BiocParallel DelayedArray HDF5Array IRanges Matrix matrixStats S4Vectors]; }; + DepecheR = derive2 { name="DepecheR"; version="1.4.1"; sha256="0dscfl6wxpl5538jzkrwisdwbr873d38rzd19vl6z5br71jvpv3v"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; + DiffBind = derive2 { name="DiffBind"; version="2.16.0"; sha256="1mwqgljya1c7r2dfrdds3nswn9bn1l3ak1wavbpv4lbv3nkmykn5"; depends=[amap BiocParallel DESeq2 dplyr edgeR GenomicAlignments GenomicRanges ggplot2 ggrepel gplots IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; + DiffLogo = derive2 { name="DiffLogo"; version="2.12.2"; sha256="0wl8q1vm4b9f0hfypn4q1xc3jiqgjl1h7kiigkfj2kxih96qw3jw"; depends=[cba]; }; + Director = derive2 { name="Director"; version="1.14.0"; sha256="144jkdnxfkvp2pxh1fq6xr9qilsxv3g8b6y294l45hxm8zag8r9v"; depends=[htmltools]; }; + DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.30.0"; sha256="1m9dsrddrllb2i88qzik1867iv9mggrgdkn0dlp8sq7gl69vmalb"; depends=[BiocGenerics IRanges S4Vectors]; }; + DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.4.1"; sha256="004wv9b16fzz4w8smzda1fzs3mwis1wf54zyw4qvfkdsc4mcq5wn"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; + DominoEffect = derive2 { name="DominoEffect"; version="1.8.0"; sha256="0m9l1zdghsv3haqk03ab9768vqbsiz0dibp9xlhl998mjlaixmbz"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; + Doscheda = derive2 { name="Doscheda"; version="1.10.0"; sha256="199lrd1d2sn7w86mnmg9lqfywjfqcplp8dwrzrwqcda8z8hrqq37"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; + DriverNet = derive2 { name="DriverNet"; version="1.28.0"; sha256="02sw2dpa0hkmq7pn8x22mp6zvy1q9ck26rx3bpnlkzwa4ij95rc6"; depends=[]; }; + DropletUtils = derive2 { name="DropletUtils"; version="1.8.0"; sha256="0zqwx0a9frsw3pmm47pwpd6rxaps0cy1hqv1iw0qv14zdhi379y2"; depends=[beachmat BH BiocParallel dqrng edgeR HDF5Array Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors SingleCellExperiment]; }; + DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.30.0"; sha256="1mv7g47qjzf7id00jlxcd8s5irps13nqi5m1n1g5q3jp3rgxk6db"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; + Dune = derive2 { name="Dune"; version="1.0.1"; sha256="0i4mwkvnqacd8lhmly32kq4ngb7f4zrlwrg6ryx993yfmnqns0bq"; depends=[BiocParallel dplyr gganimate ggplot2 magrittr mclust purrr RColorBrewer SummarizedExperiment tidyr]; }; + DupChecker = derive2 { name="DupChecker"; version="1.25.0"; sha256="1yp9dbs2k1mg4lvy043gf6jbqiv8wynryvv46jhylchdg71fw8c9"; depends=[R_utils RCurl]; }; + DynDoc = derive2 { name="DynDoc"; version="1.66.0"; sha256="12jg8kjpv2ig11i4wy08d2yy44x11hsyzb2wjjm4h441rq057yn0"; depends=[]; }; + EBImage = derive2 { name="EBImage"; version="4.30.0"; sha256="13amrbh545hwk7sygndzyv7wpa0m2y0lzlwj89jm1xm62x577w9v"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; + EBSEA = derive2 { name="EBSEA"; version="1.16.0"; sha256="060v004kbxrz5zqs90cdnwqqcbs1wlgap399rfnfxk7jw775farz"; depends=[edgeR limma plyr]; }; + EBSeq = derive2 { name="EBSeq"; version="1.28.0"; sha256="0s9r1xxpfm5794ipjm5a5c8gfxicc6arma6f74aaz8zi5y5q9x5f"; depends=[blockmodeling gplots testthat]; }; + EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.22.0"; sha256="0aw46wypnljpx9v9s5qpfs7qys45p2br2kg70q0bg63r340rilq9"; depends=[EBSeq]; }; + EBarrays = derive2 { name="EBarrays"; version="2.52.0"; sha256="00ld26bld8xgin9zqwxybahvhmqbrvr09jfphg0yr4j4zck6sqgf"; depends=[Biobase cluster lattice]; }; + EBcoexpress = derive2 { name="EBcoexpress"; version="1.32.0"; sha256="03r6isrdplhkfp416a6y53g6pvdv0ssmlxfs9z277s3nqsm9zpqm"; depends=[EBarrays mclust minqa]; }; + EDASeq = derive2 { name="EDASeq"; version="2.22.0"; sha256="12gzxjh73qshlwvsf92lbrf4bi199kxg2snrkprh1z4yqf7bjfm4"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; + EDDA = derive2 { name="EDDA"; version="1.26.0"; sha256="0chp1m1q3sjknzl5vj5l17c0q9yws934vzavr5vpzxqk0a0lk98w"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; }; + EGAD = derive2 { name="EGAD"; version="1.16.0"; sha256="068ck2j9bkml3vj33gn7q3gjrj8lac458y871rx3pyxa1y18m42x"; depends=[affy arrayQualityMetrics Biobase GEOquery gplots igraph impute limma MASS Matrix plyr RColorBrewer RCurl zoo]; }; + EGSEA = derive2 { name="EGSEA"; version="1.16.0"; sha256="0sxlhk8wzmfplss9mf9fw6wwvzalri2jx5f8hrv5rb7mj826yk8v"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 Glimma globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; + ELBOW = derive2 { name="ELBOW"; version="1.24.0"; sha256="06v566bdlgmvc0sc1yw5z46qfcg7l72jn3kx8c8v8ijwnlsn9j1j"; depends=[]; }; + ELMER = derive2 { name="ELMER"; version="2.12.0"; sha256="04ly8khbzkmqz4gdg9xljl14las8igrq1i03liclwv19vz249n92"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; + EMDomics = derive2 { name="EMDomics"; version="2.18.0"; sha256="1ngw22nd2rzdmb0xc9hif9anh1v431la1nbg2b0l2qxyi7whaslf"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; + ENCODExplorer = derive2 { name="ENCODExplorer"; version="2.14.0"; sha256="1321zk9vkaz1xxzb1r447w536srnbscmn9wbsynhfabdky8n8yp8"; depends=[AnnotationHub data_table dplyr ENCODExplorerData GenomeInfoDb GenomicRanges jsonlite RCurl rtracklayer S4Vectors stringi stringr tidyr]; }; + ENVISIONQuery = derive2 { name="ENVISIONQuery"; version="1.36.0"; sha256="1yixqwllzq9a5cxnd2w06691dzjn33v7fmfdgykfvik05s19qc2n"; depends=[rJava XML]; }; + ENmix = derive2 { name="ENmix"; version="1.25.1"; sha256="1860l5y7w5hyg79j7lmsdxd68f8dgqcdlp81vlmdfql7547yid3h"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots illuminaio impute IRanges irr matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; }; + ERSSA = derive2 { name="ERSSA"; version="1.6.0"; sha256="06d2yjcpzk40hr6n87ivfcaxjr9bwj97i0ns7cnlkzyzf3ymck9v"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; + EasyqpcR = derive2 { name="EasyqpcR"; version="1.30.0"; sha256="0pf9k6hgbwhlhi75bgs640cp5jri2vc21pml0s89phs048cpkqqb"; depends=[matrixStats plotrix plyr]; }; + EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.16.0"; sha256="1brvls8z49x632yny835s90smxbac8bgnykcmn96sgs2lm6g7qbj"; depends=[]; }; + EnMCB = derive2 { name="EnMCB"; version="1.0.8"; sha256="00dsc431x0h0h5wh4nnxpqjl2yjr7mjwy5xycwi0zgjq2cxavi4l"; depends=[doParallel foreach ggplot2 glmnet IlluminaHumanMethylation450kanno_ilmn12_hg19 minfi rms survival survivalROC survivalsvm]; }; + EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.6.0"; sha256="0xmsk3c2sz3c5rimaza5vj3ps2fdyl9dxxyvkws9frcz9d39mwb3"; depends=[ggplot2 ggrepel]; }; + EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.18.2"; sha256="1alz7awnmv0ml1vabqis2av9g4rr50bnjfmcwvixzaq23g6m969l"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; + EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.18.0"; sha256="1gs27n6cwwz8a0w2alnrc3m9walbady3km4pa9d3nrlhm003glhm"; depends=[AnnotationDbi BiocFileCache biocGraph BiocManager ComplexHeatmap edgeR geneplotter GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview rappdirs Rgraphviz S4Vectors safe SPIA SummarizedExperiment topGO]; }; + EpiDISH = derive2 { name="EpiDISH"; version="2.4.0"; sha256="0igymdkwcla1vlbkmnvdd6js0mizygsa082fwp61wbw49b872g40"; depends=[e1071 locfdr MASS matrixStats quadprog stringr]; }; + EpiTxDb = derive2 { name="EpiTxDb"; version="1.0.0"; sha256="02a5zwmbkymx2xzfjgzq5ix364820pi1q6y72cayqn9pv4qgaxll"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; + EventPointer = derive2 { name="EventPointer"; version="2.6.0"; sha256="1dbb3zjzn2d7ccd0dnhw6md284vfblh443mm7nzj8jr90520zbwf"; depends=[affxparser Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg38 cobs doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges graph igraph IRanges limma MASS Matrix matrixStats nnls prodlim qvalue RBGL rhdf5 S4Vectors SGSeq stringr SummarizedExperiment]; }; + ExCluster = derive2 { name="ExCluster"; version="1.6.0"; sha256="087j5z7mi74rrvgj53isfdg90y8ss4qia940qbpsgfjvwaj66ai2"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; + ExiMiR = derive2 { name="ExiMiR"; version="2.30.0"; sha256="047f42lby6m8n1nv97wrdly5fcalhbdf373jy9kijcnqvrz77dpl"; depends=[affy affyio Biobase limma preprocessCore]; }; + ExperimentHub = derive2 { name="ExperimentHub"; version="1.14.2"; sha256="1kgvprchz1fg8pl1irj62mk2gyb4jcc9iimpypv4c2iccy5bp84x"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager curl rappdirs S4Vectors]; }; + ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.14.1"; sha256="017siipnd11l0wi1wy30iav7yaxnvp2j872x4pbglk8yr5mi4fcy"; depends=[AnnotationHubData BiocCheck BiocGenerics BiocManager biocViews curl DBI ExperimentHub graph httr S4Vectors]; }; + ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.0.2"; sha256="0zmkfi3l5lgk8z1c87ygj6k1gad3z0szv9a7mm2bklyjyy3nhay0"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard tibble tidyr]; }; + ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.16.0"; sha256="13fiyaaillx44yc5rl58b3vsjl47y8adv2cq06anm8zc1v3ddvdr"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; + ExpressionView = derive2 { name="ExpressionView"; version="1.40.0"; sha256="195l8jz22bg8rb8r6hyqwn3r57cjvnwgncvd5nchbjwbl77mpdig"; depends=[AnnotationDbi bitops caTools eisa GO_db isa2 KEGG_db]; }; + FCBF = derive2 { name="FCBF"; version="1.6.0"; sha256="1y9l1m2b84vzkmzm07wb09q5b6yxhhxs6p5zgxflbcb3lv3mspjr"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; }; + FELLA = derive2 { name="FELLA"; version="1.8.0"; sha256="05g4rg8mq5zmfw6cmdnrd8222chggb3hmp3dixfp6aayv40lnvcr"; depends=[igraph KEGGREST Matrix plyr]; }; + FEM = derive2 { name="FEM"; version="3.15.0"; sha256="1d0p5jibzmfs2kmxlr30yr2ws1b3jyhpsbng1iszd6q904k302xd"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix org_Hs_eg_db]; }; + FGNet = derive2 { name="FGNet"; version="3.22.1"; sha256="02jlkhi81d0z8f384acl4c1xzzv0hlgzkb9y3gmydx7pai3a6rrb"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; + FISHalyseR = derive2 { name="FISHalyseR"; version="1.22.0"; sha256="1hhfi6rznqjzf4iq606qx9phql7kdv35m1dl71dpvczvsyajxlsn"; depends=[abind EBImage]; }; + FRASER = derive2 { name="FRASER"; version="1.0.1"; sha256="15i3pwr58d352qkyirppzbq3yzw790fn7r9nwlrqrnqicl3hvyil"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 HDF5Array IRanges matrixStats pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; + FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.24.0"; sha256="0wxxhhfy8y8nnz037wxxj69hsyf1hznklhd955r2ifzjnhm0kv79"; depends=[fda MASS]; }; + FamAgg = derive2 { name="FamAgg"; version="1.16.0"; sha256="1igmbcca10fanlnyjkhhnsbpcadq3914yggp5b7r857inqrv76jp"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; + FastqCleaner = derive2 { name="FastqCleaner"; version="1.6.0"; sha256="1b4il9hvpif6galzgzhcp4j6y1kh62y7hc3wislv7zp33lq80888"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; + FindMyFriends = derive2 { name="FindMyFriends"; version="1.18.0"; sha256="0c86v2nfpy81ndi2cw14fw7vzqpc5i3ik59wl48b5h5n3592bc24"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; + FitHiC = derive2 { name="FitHiC"; version="1.14.0"; sha256="1dffkdxm08wq4kjd9j2v2625x3p6vbrk33a2zx94pwpgkghr72yp"; depends=[data_table fdrtool Rcpp]; }; + FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.20.0"; sha256="0fn8k9w5zdvca45cx46w00q6f5my0ca00djl04v17kwzc0ywch98"; depends=[jsonlite RCurl XML]; }; + FlowSOM = derive2 { name="FlowSOM"; version="1.20.0"; sha256="1p17jv4q1dbcc47jpjy9hbcvzpwrx8waq7qpcj778jsyz6z6jh78"; depends=[BiocGenerics ConsensusClusterPlus CytoML flowCore flowWorkspace igraph RColorBrewer tsne XML]; }; + FoldGO = derive2 { name="FoldGO"; version="1.6.0"; sha256="1gf6b2s18c92bvgj7y0dk52k5by2z6xmfw4ah23rl70gm0dy1r0s"; depends=[ggplot2 tidyr topGO]; }; + FourCSeq = derive2 { name="FourCSeq"; version="1.22.1"; sha256="14q1ijnqnbd9xs60sfvyqjfiypjrvhacpwp2v85yfhcxw870cx5b"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; }; + FunChIP = derive2 { name="FunChIP"; version="1.14.0"; sha256="02lv9bw3cxjyfxqjg7kvhvdzxwmnyraalhr1f887322xicq6gxjm"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; + FunciSNP = derive2 { name="FunciSNP"; version="1.32.0"; sha256="06yx35hg0lpg7draai4nsl9ggjq2rxdrwrsycky9g8a57r2gr327"; depends=[Biobase BiocGenerics ChIPpeakAnno FunciSNP_data GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer S4Vectors scales snpStats TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + GA4GHclient = derive2 { name="GA4GHclient"; version="1.12.0"; sha256="0ia4vispy75pk3gfd5aaa0gjs2l3frfc71ykjr6r2j2qbw0lcjiq"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; + GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.10.0"; sha256="0qrqm2cmsnl3qkvaj5vhyxddyny0ds9ba26z45ciz6a5jafmsl5h"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; + GAPGOM = derive2 { name="GAPGOM"; version="1.4.0"; sha256="162bjk3dsqjxf1zgxr353bk072x91y0587akx8m125mwymgdlfw4"; depends=[AnnotationDbi Biobase BiocFileCache data_table dplyr fastmatch GEOquery GO_db GOSemSim graph igraph magrittr Matrix matrixStats org_Hs_eg_db org_Mm_eg_db plyr RBGL]; }; + GARS = derive2 { name="GARS"; version="1.8.0"; sha256="0nqar2fv89b29yil7sjmd8c1j0li5r73x74qmiz7nv7d4iyv3h5l"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; + GAprediction = derive2 { name="GAprediction"; version="1.14.0"; sha256="1av3vl19xp9qmgvr712rhczlp07686bhb4wi74fixxnk7i0791wm"; depends=[glmnet Matrix]; }; + GCSConnection = derive2 { name="GCSConnection"; version="1.0.1"; sha256="09awkmfixz4cdgz6v90g4fdny7ayi0ncnzyj74gl0b2wdwxfvinf"; depends=[googleAuthR googleCloudStorageR httr jsonlite Rcpp]; }; + GCSscore = derive2 { name="GCSscore"; version="1.2.0"; sha256="09mbqn5cx8qp73dim6ir1kcyjw6syqxq0xlhygc1s5yvnia2w09c"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; }; + GDCRNATools = derive2 { name="GDCRNATools"; version="1.8.0"; sha256="0c1kk8y9pqqfvw83k8rfhwc8v0sxg7r52cvfmsqn2r72j3zrzkdx"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; + GDSArray = derive2 { name="GDSArray"; version="1.8.0"; sha256="0nj75anpdfkss40phicii6c5b4arpp6p7hshz9yccfw9j7an358i"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; + GEM = derive2 { name="GEM"; version="1.14.0"; sha256="1v0h32inynf703cz4dbd8wj6yvsmqybkzrw1fis8kkkgjcng0x3d"; depends=[ggplot2]; }; + GENESIS = derive2 { name="GENESIS"; version="2.18.0"; sha256="0jzaz87x6fi9ryndzj084dyh959a0lb1wx5mwxvfm1d32irdjzxa"; depends=[Biobase BiocGenerics data_table dplyr foreach gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; + GENIE3 = derive2 { name="GENIE3"; version="1.10.0"; sha256="1bsm0gxracsyg1wnaw3whvskghfpbgbm9navr8wdmxj2hjp3dqs7"; depends=[reshape2]; }; + GEOmetadb = derive2 { name="GEOmetadb"; version="1.50.0"; sha256="1y4ldbfl63d2s9s7jxqbr8x6rwxq8nd1dsxd0yrzr5ka9k3ha6w2"; depends=[GEOquery RSQLite]; }; + GEOquery = derive2 { name="GEOquery"; version="2.56.0"; sha256="0sap1dsa3k3qpv5z5y3cimxyhbm8qai87gqn3g1w3hwlcqsss92m"; depends=[Biobase dplyr httr limma magrittr readr tidyr xml2]; }; + GEOsubmission = derive2 { name="GEOsubmission"; version="1.40.0"; sha256="0jkmdx6dj4mq8kfz2yp3lnvxy2pgqnibn513sk13mj2z1chgd1xr"; depends=[affy Biobase]; }; + GEWIST = derive2 { name="GEWIST"; version="1.32.0"; sha256="0c8j2r89l39qck3pg6b67xzrf6kgv9m4xz2nsmdxvpx50f774qc6"; depends=[car]; }; + GGBase = derive2 { name="GGBase"; version="3.50.0"; sha256="1x2iz08dxw2a7j0dzk101h8k2fjscqs1h2bysc1z767dlypfl7c6"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; }; + GGPA = derive2 { name="GGPA"; version="1.0.0"; sha256="1sgsxvwincj14sbnihvxi16ivpv1z1nc7f0ipz7965rzi994535f"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; + GGtools = derive2 { name="GGtools"; version="5.24.0"; sha256="0n6srbxvw94jagkb48k4p1f6rvjfj96k5bzbzv9h2wf8a0yykrmf"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin Homo_sapiens IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; }; + GIGSEA = derive2 { name="GIGSEA"; version="1.6.0"; sha256="1fp6q1p8y474h9swn15dkf2xk06y9cgflc3yxagd36y48jaf8z6n"; depends=[locfdr MASS Matrix]; }; + GISPA = derive2 { name="GISPA"; version="1.12.0"; sha256="1xmlp4zfhzqxlvqvdi7x170f8fd9pf52lri3ll84mmi0as2c0ya0"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; + GLAD = derive2 { name="GLAD"; version="2.52.0"; sha256="1kg4hz0r38q02w3mrqh6s5llhgp8hd8jw4n54fvi5npjq68y7xlw"; depends=[aws]; }; + GMRP = derive2 { name="GMRP"; version="1.16.0"; sha256="0l38yqjyl6za6wkx435cygcwj1mhqw57l7bgcnp7s0606a82vql1"; depends=[diagram GenomicRanges plotrix]; }; + GNET2 = derive2 { name="GNET2"; version="1.4.0"; sha256="0853nrd4zwgidmn73az1352y5jcxl65siijnx1v0gac8wj1vgkn1"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; + GOFunction = derive2 { name="GOFunction"; version="1.35.0"; sha256="172abls5qlcg7kq0bax9z0xj75f7wmj3725h6s7hl0dwjjiypair"; depends=[AnnotationDbi Biobase DBI GO_db graph Rgraphviz SparseM]; }; + GOSemSim = derive2 { name="GOSemSim"; version="2.14.1"; sha256="0v4q9xr1cm5xr08pgbzrss41kh3yz7xyh31n55l0sjmr1629ykln"; depends=[AnnotationDbi GO_db Rcpp]; }; + GOSim = derive2 { name="GOSim"; version="1.26.0"; sha256="1q8q48vggqsi1wnv2c188rhcvn8njzzmgi479z99854l3557va32"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; + GOTHiC = derive2 { name="GOTHiC"; version="1.24.0"; sha256="077wrwf7y10nwvkc3pv1kw38bm14zivr0h5df7b1382sisbqv69n"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; + GOexpress = derive2 { name="GOexpress"; version="1.22.0"; sha256="1zkqly6xsyna7151yfdws089i0imzh8ck0q003ds8bvm764prds0"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; + GOfuncR = derive2 { name="GOfuncR"; version="1.8.0"; sha256="1ixjkqb9wpwqfzxsg0h96c6fa63wrk72sfh6x4pq0kpyrcc0ind1"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; + GOpro = derive2 { name="GOpro"; version="1.14.0"; sha256="1xs3gf5q0b7krk1rqr1p31m75ixrpjrvw1q4af1xlxxzv5zw3j92"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; + GOstats = derive2 { name="GOstats"; version="2.54.0"; sha256="00q39cyv4l28r6s9gjnd0qhl7h80vmwp4lpmchisqzj44xzyics9"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; + GOsummaries = derive2 { name="GOsummaries"; version="2.24.0"; sha256="0r7aq2s638hb7s39fjbyics9kvrmmizm5pa490xv19p0dm7hhllj"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; + GPA = derive2 { name="GPA"; version="1.0.0"; sha256="0wcl3rnlvnn2m2rwhjyx1ydanmr0zp8ka41yvbllxc6p7w73dr0b"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; + GRENITS = derive2 { name="GRENITS"; version="1.40.0"; sha256="1824d5d3w9f95k9j9j5l50m0vjmaahy43maga341ppaklqvh6x19"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; + GRmetrics = derive2 { name="GRmetrics"; version="1.14.0"; sha256="1zpmcmykxalqahn14h0a60fsrb4gp07bnbj50lasw0jyg603m31m"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; + GRridge = derive2 { name="GRridge"; version="1.12.0"; sha256="1lqmx69a8xib7hqg203927cg3h0bfaiaiz76i9asi0jxhrqzh4q6"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; + GSALightning = derive2 { name="GSALightning"; version="1.16.0"; sha256="08hv7v19gzfjaa37r8q4c88skrfz1awi42cp40680hjchm6mkxi9"; depends=[data_table Matrix]; }; + GSAR = derive2 { name="GSAR"; version="1.22.0"; sha256="0war5rvs6vdbbal5g9qhrisgf4rbhcdpx3lxqw1nyiv2gfkrszmv"; depends=[igraph]; }; + GSCA = derive2 { name="GSCA"; version="2.17.0"; sha256="0a6sna2ccyg1qxbhd2srg4hbivgpsac6bgs03bkxf4b0jqxza9zn"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; + GSEABase = derive2 { name="GSEABase"; version="1.50.1"; sha256="1k4faj53cwvqijad8cf7fcghzxcv9shlbpl8n73bsncc8k192y2j"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; + GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.8.0"; sha256="0lvh8j6ixxvh3klkafdvf8jdr4lxs92mm002d3p1ns3m9z9gpin3"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO rappdirs S4Vectors SummarizedExperiment]; }; + GSEAlm = derive2 { name="GSEAlm"; version="1.48.0"; sha256="1jgh806jysws49czkcrbz7b69hkyrwwrsjarzf6nd234097rxbbc"; depends=[Biobase]; }; + GSRI = derive2 { name="GSRI"; version="2.36.0"; sha256="1w53fn9aihj1l2shv2dydvnc9kjxmxmj4lw2vp1ds0fs833bvh7y"; depends=[Biobase fdrtool genefilter GSEABase les]; }; + GSReg = derive2 { name="GSReg"; version="1.22.0"; sha256="1zpsqaqxhqhgf2jr7hq918f6bdjlvb2vsyp46bxkspkbprpljx6b"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; + GSVA = derive2 { name="GSVA"; version="1.36.2"; sha256="0sv3hhky9npykf3pjvmrzkxjjv3phg2z562v3mv3n50bj5r21sis"; depends=[Biobase BiocGenerics BiocParallel fastmatch GSEABase S4Vectors shiny shinythemes SummarizedExperiment]; }; + GUIDEseq = derive2 { name="GUIDEseq"; version="1.18.0"; sha256="0synw91pis14ysi0bwndgzf8pa2cq2ls9l7l4v47163yi7ddcfi1"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; + GWASTools = derive2 { name="GWASTools"; version="1.34.0"; sha256="18jxfgv5l1cg0024pzf5ns7l2s4dpfai6xz2lzbi0afjms9x0awp"; depends=[Biobase DBI DNAcopy dplyr gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; + GateFinder = derive2 { name="GateFinder"; version="1.8.0"; sha256="076165xapgmds3syrq4j1r7w8lwlqxchdmrn9clqasd3pp97dp1x"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; + GenRank = derive2 { name="GenRank"; version="1.15.0"; sha256="17cw9y5mh94if7szdjgz5c0q0j50b8xg5vc4wv7nv87gvnpaaw9x"; depends=[matrixStats reshape2 survcomp]; }; + GenVisR = derive2 { name="GenVisR"; version="1.20.0"; sha256="0mdix3bfdqdz4khm5lq2sl2dyza7xcih5fygm8yjfx5c3266cdkz"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI FField GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; + GeneAccord = derive2 { name="GeneAccord"; version="1.6.0"; sha256="1qz49nmkmrli0c5zl1s76ii5vfyd6va4dzaclxbia1dgafwld4c8"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; }; + GeneAnswers = derive2 { name="GeneAnswers"; version="2.30.0"; sha256="0sd91lnknix6z9xgfc8i00l41p0fsz2w5l11p3wh7r9j1kqp1air"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; }; + GeneBreak = derive2 { name="GeneBreak"; version="1.18.0"; sha256="1rc0wngxl8g89icj612m8g77hhzw20jygpk9z8s0ky955fs8m7y8"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; + GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.34.0"; sha256="0ggn2rbkbmqflk7114zn9zg898ilsbydrbhk7q5nxr329xj383k4"; depends=[Biobase PGSEA]; }; + GeneGA = derive2 { name="GeneGA"; version="1.38.0"; sha256="0vpak9k5dc7v2nqc8jn8ibd8sndjmyjr5rsba1790ydg40m04fj4"; depends=[hash seqinr]; }; + GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.14.0"; sha256="16kr2hp6nhm7ww0vrx8f9xlrc63xcvn7d55jwy21kcqwilxwlsij"; depends=[data_table FactoMineR GenomicRanges GGtools igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; + GeneMeta = derive2 { name="GeneMeta"; version="1.60.0"; sha256="02hznqrajhqws3hvqgcz7wrkzrr922ld6ynq66hyg9a76z2nbag6"; depends=[Biobase genefilter]; }; + GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.30.0"; sha256="0dps7cr50zslwbxqipzsf50rq201fbhwb1186wpav1zrmcig0xl9"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; + GeneOverlap = derive2 { name="GeneOverlap"; version="1.24.0"; sha256="1r90ykp6yb0kfa2njvh6icn6ddkf1pkw2v076i0j6mwbkl34hc9a"; depends=[gplots RColorBrewer]; }; + GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.44.0"; sha256="144zssz7wwy7asv4nbpryz8dbhzyczc840vj0dk4k1h8rapgmgb8"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; + GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.32.0"; sha256="012il4pi95wm27960jiy9g948z51ylz1029553m5b6pl0f6fhybb"; depends=[Biobase limma MASS]; }; + GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.8.0"; sha256="060229g9wg26k086g4a9kdwfw9gawym3hq1x9vdxxph11g0i1saf"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; + GeneTonic = derive2 { name="GeneTonic"; version="1.0.1"; sha256="0wrkzbnkidj53vd5l6ga9789gjngbsg197xbymwcaimfmfjismvx"; depends=[AnnotationDbi bs4Dash ComplexHeatmap dendextend DESeq2 dplyr DT dynamicTreeCut ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinycssloaders shinyWidgets SummarizedExperiment tidyr viridis visNetwork]; }; + GeneticsDesign = derive2 { name="GeneticsDesign"; version="1.55.0"; sha256="14xnmqfqcrdanyayihqf1g4hckcfzl06rds6cf8vcp4852j7zap1"; depends=[gmodels gtools mvtnorm]; }; + GeneticsPed = derive2 { name="GeneticsPed"; version="1.50.0"; sha256="0wlmmxgpgyk2wz84598zyyjj7wdyqq2vlajnmpzcf7r2vgwrqp9a"; depends=[gdata genetics MASS]; }; + GenoGAM = derive2 { name="GenoGAM"; version="2.6.0"; sha256="06r9gzk9sp23qd4rffyc5bznw0gj8kcg4mrnjgkx3kjy48qz8nq3"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; }; + GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.24.2"; sha256="1cqs53p4m5q1dr59war72bccphy01ilw4xra24fmngrv4x32rznd"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; + GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.24.0"; sha256="0v8k6d7frm5p48cmk4zik78cw9abz4inx0zhl4zrmmx31ifyvk8d"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; + GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.12.0"; sha256="1mn061chcq4az89v0a5r70wp56nlfg9vdrs89rq6cps5qri7kscq"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang S4Vectors SummarizedExperiment tibble xml2]; }; + GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.40.1"; sha256="0zm7q957g952qyfqmvf27sldsnq6sqd0wlgnqzvmxayg9pxh0l0z"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; + GenomicFiles = derive2 { name="GenomicFiles"; version="1.24.0"; sha256="1k3824pzf9fdqvcv6cz2742q3mabpmncrc72hwa21ac8wy1b04n4"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.22.0"; sha256="0fg66v31nfajb40da6gxpigm2z11ywkdijs7npvc1mr62ynx9qmy"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; + GenomicOZone = derive2 { name="GenomicOZone"; version="1.2.0"; sha256="03hdg6gv8y8f3kfjmqpf4n0751y35c75d3kaxajpiy7j6g0i6s13"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges plyr Rdpack S4Vectors sjstats]; }; + GenomicRanges = derive2 { name="GenomicRanges"; version="1.40.0"; sha256="0wn1zr2qq0rpv9z2wialgizn6xzdlcjg1w2kif67n53svz6vk2x1"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; + GenomicScores = derive2 { name="GenomicScores"; version="2.0.0"; sha256="0si2lgc37mkah4w990q1q2bf8xmshxj7cbx92bcrp0zaipjr96bb"; depends=[AnnotationHub Biobase BiocGenerics Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors XML]; }; + GenomicTuples = derive2 { name="GenomicTuples"; version="1.22.1"; sha256="0xb4hcd4ysify3nzx5nb79hhw440n46fbx3w3mfgjgc56147105h"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + GladiaTOX = derive2 { name="GladiaTOX"; version="1.4.0"; sha256="13h8n57z6a22q7b8qjr1w8lf9gh9xr4mp1lfpsk86wzf7xdybjdi"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; + Glimma = derive2 { name="Glimma"; version="1.16.0"; sha256="1bxfgwjqb9p400a5a5q6p17kcnl3ddz090llihkfih9kyxii9n4y"; depends=[edgeR jsonlite S4Vectors]; }; + GlobalAncova = derive2 { name="GlobalAncova"; version="4.6.0"; sha256="0z93hqzvxcbv42k40j83fa5bkk1jpmc5clmraa34wlh6n136k7xi"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; + GmicR = derive2 { name="GmicR"; version="1.2.0"; sha256="09fn9p0h4jly3vbkq0d847qj1pl6jhi9p5fp155mapsa3g5dd0w0"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; + GraphAT = derive2 { name="GraphAT"; version="1.60.0"; sha256="1cb6r6xl0dg82dvlayl5rnslna73w59p7zfwb5hafhgzb68ci1f3"; depends=[graph MCMCpack]; }; + GraphAlignment = derive2 { name="GraphAlignment"; version="1.52.0"; sha256="1r42nl1aghmx1d9pcmzrkzk4mlchv3cxyh026nd5k65wyp861smy"; depends=[]; }; + GraphPAC = derive2 { name="GraphPAC"; version="1.30.0"; sha256="0arb93kwg1z2a98059k0ipv3x8s4rpmb9sxm2kjhg0yn3mq7dgbr"; depends=[igraph iPAC RMallow TSP]; }; + GreyListChIP = derive2 { name="GreyListChIP"; version="1.20.0"; sha256="1y1q8w61jmxfc8g9ilz8qxap4ggm9kn7xp44nzlsi3ihxfbxcf5s"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; + Guitar = derive2 { name="Guitar"; version="2.4.0"; sha256="0qd8ll4qpqc8l1pnvr9lkdsx3pi9a4s8jd08hw4s2yl1vryg1rg3"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; + Gviz = derive2 { name="Gviz"; version="1.32.0"; sha256="0cgkp0ciyy2qykqgh3vzp5mx9b4vsvacjh2jnsj3wldiapzlz08a"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; + HCABrowser = derive2 { name="HCABrowser"; version="1.4.0"; sha256="0klrw4iczflyljs0wp5pa2di5rl00bsz0f188wyysaw7akyc4kgh"; depends=[BiocFileCache curl dplyr googleAuthR httr jsonlite plyr readr rlang S4Vectors stringr tibble tidygraph tidyr]; }; + HCAExplorer = derive2 { name="HCAExplorer"; version="1.2.0"; sha256="1k563mkx088syha6m449a89q9xwlkbkmkbdghp0gka1z6pam3b6l"; depends=[curl dplyr httr jsonlite plyr rlang S4Vectors tibble tidygraph vctrs]; }; + HDF5Array = derive2 { name="HDF5Array"; version="1.16.1"; sha256="01767v90nl0499jcicpxngbbs0af5p9c5aasi5va01w3v5bnqddn"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 Rhdf5lib S4Vectors]; }; + HDTD = derive2 { name="HDTD"; version="1.22.0"; sha256="14kl4ys8h5kkcn49mlybzihl3iy8dy40c2giv1qmiy5p5jvbwijw"; depends=[Rcpp RcppArmadillo]; }; + HELP = derive2 { name="HELP"; version="1.46.0"; sha256="0bk9ajrvlir5cca3jmpwg9r6mpxngybbpvys00y2zwpi9dviwdjq"; depends=[Biobase]; }; + HEM = derive2 { name="HEM"; version="1.60.0"; sha256="0sk8vh1ic03sdhb0h695d7q9xj96m3pkd5bnfs2rn0mgy5q6w3r4"; depends=[Biobase]; }; + HIBAG = derive2 { name="HIBAG"; version="1.24.0"; sha256="013k9dzhycrnkf04pqqrlaz8pgga986ray0abipakqa95sjrz870"; depends=[]; }; + HIPPO = derive2 { name="HIPPO"; version="1.0.0"; sha256="0jmbazwz4blr6wgprfc4blbycs2vixvfhfvk27ax1pnzrjz5917j"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; + HIREewas = derive2 { name="HIREewas"; version="1.6.0"; sha256="1wz4058pnn8drcp79m7wqcvzgggqdjsd3rbnvjw9inq0r9bl6vwd"; depends=[gplots quadprog]; }; + HMMcopy = derive2 { name="HMMcopy"; version="1.30.0"; sha256="1p7zkwnjd3d8d06np6bcmgfdrlw0ad9aaxrxvmn55s4q6d53llcl"; depends=[data_table]; }; + HPAanalyze = derive2 { name="HPAanalyze"; version="1.6.0"; sha256="0b0jswr1mdr0k9abw7gzbjsfmfi1rmh5rphf9kgamg1v8m9zkf4b"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; + HTSFilter = derive2 { name="HTSFilter"; version="1.28.0"; sha256="1arjb3xz5pcqm61baj7q2jn85fqzdgqzk7adk59hrjk31jr6fyf7"; depends=[Biobase BiocParallel DESeq DESeq2 edgeR]; }; + HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.18.0"; sha256="1xjs7pi8500b9nr2x9bbdxdbi3sz0l9g4d4by3wip9sfiq66c6g4"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; + HTqPCR = derive2 { name="HTqPCR"; version="1.42.0"; sha256="08bd5zkjdnz726s03bvvzv03va0xbrr818ipp6737z9g3nk9m81j"; depends=[affy Biobase gplots limma RColorBrewer]; }; + Harman = derive2 { name="Harman"; version="1.16.0"; sha256="0avr9c02iq8qvz712ssfqrx2kr9bz9wymy66rsgqn0fby63rkh2h"; depends=[Rcpp]; }; + Harshlight = derive2 { name="Harshlight"; version="1.60.0"; sha256="13qmzv4n1v9c9vs4bb229rq6ddawb04v191c6dqcd7nlwg0wdwdz"; depends=[affy altcdfenvs Biobase]; }; + Heatplus = derive2 { name="Heatplus"; version="2.34.0"; sha256="12nd0h8svx7qydv1shk0gdpvnbixf7qi6zh06881wsmxf5s970rw"; depends=[RColorBrewer]; }; + HelloRanges = derive2 { name="HelloRanges"; version="1.14.0"; sha256="1f7qpccyw5nxdb7dqgfn3faxy9aiab6n262hlnikk24r2s800zv6"; depends=[BiocGenerics Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + HiCBricks = derive2 { name="HiCBricks"; version="1.6.0"; sha256="1gnybwffzlgckimikipp4kl58i6h7cxz0qxdg5jx2yb2hpbna4rr"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; + HiCcompare = derive2 { name="HiCcompare"; version="1.10.0"; sha256="0rrrbr1656xl34k6js3ynv2czh8ciryw7r7hm9va91zjw74wak93"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq rhdf5 S4Vectors]; }; + HiLDA = derive2 { name="HiLDA"; version="1.2.0"; sha256="0kj93w5l69y179d36z3s520dgxf6ykgbmyjaa43cb1hy5gn5g93s"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; + HiTC = derive2 { name="HiTC"; version="1.32.0"; sha256="1jx2pfa7sbdz7xi466lz1h5xv126g56z73n0a5l2wrq28k47qaxy"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; + HilbertCurve = derive2 { name="HilbertCurve"; version="1.18.0"; sha256="1z3rd6hshh1mhqk4qqxsz6vi57r4882aa61f5x4zw2yzlhwlw6f4"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; + HilbertVis = derive2 { name="HilbertVis"; version="1.46.0"; sha256="12vl2n2yclnvc0s5gsrl0hfsxva8sa56x8k72zskbgi7s9c8cq12"; depends=[lattice]; }; + HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.46.0"; sha256="1yvzx98hfw9i1bg2g516rdi6hp0c5j3vj63y5n0x6pckv82q71xb"; depends=[HilbertVis]; }; + HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.4.0"; sha256="1qvm6pw3ij6g6v9qa6d1iq005rs4cclhg916b3pv8pcncf2q2z4v"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; + HybridMTest = derive2 { name="HybridMTest"; version="1.32.0"; sha256="1knqyqb3q1l21h4n5572j773hm23rim8i7wbazldbg39dwxkmcwx"; depends=[Biobase fdrtool MASS survival]; }; + IHW = derive2 { name="IHW"; version="1.16.0"; sha256="169ir0k1gygdh1wybwa0drdxnhrdrlyzzy0rkygi7jsirn69m74j"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; + IMAS = derive2 { name="IMAS"; version="1.12.0"; sha256="1vq0i0568c6gqn4vqsaqrj038dm4qrnh32kmqmn3c0blwal8abia"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; + IMMAN = derive2 { name="IMMAN"; version="1.7.0"; sha256="009hnr27jcj9pwz5s1vbjrvrxhp0pvdfg5w575vgx180yrp9gfhy"; depends=[Biostrings igraph seqinr STRINGdb]; }; + IMPCdata = derive2 { name="IMPCdata"; version="1.24.0"; sha256="0jnj6mrwfjyfp4vgiyn5h2l9nry2gcqyjhp5bfsb086xvj98qvr4"; depends=[rjson]; }; + INDEED = derive2 { name="INDEED"; version="2.2.0"; sha256="10nlkkcqan6ihn9g2fxw306bcvgqvsfdcv2ar4pvs6jy939m6g1y"; depends=[devtools glasso igraph visNetwork]; }; + INPower = derive2 { name="INPower"; version="1.24.0"; sha256="1cfny1pyx29gdfcgp9xv87ra9n9kgl73qiv8kc71l5zdvvwja4l4"; depends=[mvtnorm]; }; + INSPEcT = derive2 { name="INSPEcT"; version="1.18.0"; sha256="1yyglkdc3ww2jzswhcxk9g1imydfm39krl87as5l9fbm7mv3vd4z"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve gdata GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + IONiseR = derive2 { name="IONiseR"; version="2.12.0"; sha256="05fndlblczabva60gn6h0dijqxyn0wknrv8a925fgc4bn415g31w"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; + IPO = derive2 { name="IPO"; version="1.14.0"; sha256="07agz8ambs974dfssvbralmk4id4dvrwz1grxzp1gh72a27f2072"; depends=[BiocParallel CAMERA rsm xcms]; }; + IPPD = derive2 { name="IPPD"; version="1.35.0"; sha256="00aa0pfawwinnx6wnmgwf8vm7j5g77xm1cikswj1f3k1r604p1ha"; depends=[bitops digest MASS Matrix XML]; }; + IRanges = derive2 { name="IRanges"; version="2.22.2"; sha256="1y24jw62806wp2afiyj1x6n00gj7d3323klqdypra9q43pg1w49d"; depends=[BiocGenerics S4Vectors]; }; + ISoLDE = derive2 { name="ISoLDE"; version="1.15.0"; sha256="1w3viwwyid04rfm9q3d85i1xm9yja25dqlz9yyqr13jgw0jhnwl0"; depends=[]; }; + ITALICS = derive2 { name="ITALICS"; version="2.48.0"; sha256="1gp71pfipmnad64l1q98528whw6b2drkrwxby14qdbgq8fcwvkqd"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; + IVAS = derive2 { name="IVAS"; version="2.8.0"; sha256="0zrxbyv3gdczldmcwlg53a9v4xxlkxmj7ln2lkcfmr80i3r30c74"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; + IWTomics = derive2 { name="IWTomics"; version="1.12.0"; sha256="1nh7pp8xcrs67wis8aq9mfdjhxpnxj2syag1yh7hs1yxxfavnrv2"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; + Icens = derive2 { name="Icens"; version="1.60.0"; sha256="0fh7wgkrw20f61p06i87nccnbig9wv4m0jcg7cx1rw7g2ndnabgp"; depends=[survival]; }; + IdeoViz = derive2 { name="IdeoViz"; version="1.24.0"; sha256="1ndj14qhpgidjb4qsga80ghqzz1x8kvy2gy1bvvgwlkfxa62rn50"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; + IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.2.2"; sha256="1c2mbxq2l2gxgzsp0hbvmjq4ccarynrf5bsq90my10s08r53i64m"; depends=[Rcpp reshape2 rstan StanHeaders SummarizedExperiment]; }; + Imetagene = derive2 { name="Imetagene"; version="1.18.0"; sha256="0maazm996cww13cv3pkmwbwv89q03vfx9r8cv0vd6667mlprs21k"; depends=[ggplot2 metagene shiny shinyBS shinyFiles shinythemes]; }; + ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.16.0"; sha256="0simrb1xdpb8vidg8faxjqwmmwskmdqnw46bfs5z29i792pnsl1i"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; + ImpulseDE = derive2 { name="ImpulseDE"; version="1.13.0"; sha256="0pvsn3yja01c6imljdf09x1qax3bxc6b80jscxq0cnkys58czq43"; depends=[amap boot]; }; + ImpulseDE2 = derive2 { name="ImpulseDE2"; version="1.11.0"; sha256="0b5qaivc528bpimfk19qabsl8fmdfvq61yk1ip2dywf2qaryy3kx"; depends=[Biobase BiocParallel circlize ComplexHeatmap cowplot DESeq2 ggplot2 knitr Matrix S4Vectors SummarizedExperiment]; }; + InPAS = derive2 { name="InPAS"; version="1.20.0"; sha256="1jvzihfj75dfsa11gczbww395k8whaw6vryfw0q3ig1fjrqrbr71"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; }; + InTAD = derive2 { name="InTAD"; version="1.8.0"; sha256="09alwyy3klzigghb3gnmgf61vmfaikbzjqlgjqfzgqq916sw2yfn"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; + IntEREst = derive2 { name="IntEREst"; version="1.12.0"; sha256="1mrnqffmmdinj6339fhb7jzl39bvmavls00gcfr8v2yzppsnf2z4"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; + InterMineR = derive2 { name="InterMineR"; version="1.10.0"; sha256="1klw1qz8hd21n2rz9npsjg4si43dpqh0v0jm8qklmsfbyvma17xy"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; + InteractionSet = derive2 { name="InteractionSet"; version="1.16.0"; sha256="1nsivm9j0mzkfhwqsa2y9gxxdbaplg4z8vn5dfvls3nrihnqpk4v"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; + IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.10.0"; sha256="0cybirfm3npmqnl4r6s3gw94hvbhpn16jxxpyxasmkfcnkk192ny"; depends=[FGNet igraph knitr]; }; + IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.6.2"; sha256="10gs0ibhan7wqydxgrpbfx7c1vnhjn23xi0nf4ji164vaz51wlh3"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; + IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.4.0"; sha256="1r65wij834pcrajp035kpi032w9lza50216b93mbq5jqk4000bxj"; depends=[IsoCorrectoR readxl tcltk2]; }; + IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.24.0"; sha256="0984a8r9alzqcdkfz1xim7xh2xbyrlh3zmbsinpgqa76jpcz8gp2"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; + IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.10.0"; sha256="17ig0j8dyqjzbp9xskplpa2fvncdwyad02vjd10mv4h27s0g25ai"; depends=[Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer readr reshape2 rtracklayer stringr tximport VennDiagram XVector]; }; + JunctionSeq = derive2 { name="JunctionSeq"; version="1.17.0"; sha256="1p99792yh53pwyslpc7bv0llh0dwkk5zdagdsqmkkia6fdy226s0"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter geneplotter GenomicRanges Hmisc IRanges locfit plotrix Rcpp RcppArmadillo S4Vectors statmod stringr SummarizedExperiment]; }; + KCsmart = derive2 { name="KCsmart"; version="2.46.0"; sha256="12vf625ndwhqizs69xxwcvqrycksfvpz3xsii54fy4kdm4ggxlk7"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; + KEGGREST = derive2 { name="KEGGREST"; version="1.28.0"; sha256="0q76w17fya2x0z7mvyhkk5kqh07flldgih13ma44vhcy1bdlm6j1"; depends=[Biostrings httr png]; }; + KEGGgraph = derive2 { name="KEGGgraph"; version="1.48.0"; sha256="10gqcawfk3na703c3yfrkzqmk9y8ijn7af0vrjd3ny8jspwyqbv9"; depends=[graph RCurl XML]; }; + KEGGlincs = derive2 { name="KEGGlincs"; version="1.14.0"; sha256="043nhw0yjz735v6injd4axygkjy15b6a4xa3qnnzrg8qg82jg2xf"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; + KEGGprofile = derive2 { name="KEGGprofile"; version="1.30.0"; sha256="017zm9ciasyfqqil7wszcs1kdj6qzzcbmknm1nnp7ylsm7gdlz0y"; depends=[AnnotationDbi biomaRt ggplot2 KEGG_db KEGGREST png RCurl reshape2 TeachingDemos XML]; }; + KinSwingR = derive2 { name="KinSwingR"; version="1.6.0"; sha256="1cxj8cw5q9976wpy950ra8ghkpz1dy5zp4rf5d7hgb9kfs16pscr"; depends=[BiocParallel data_table sqldf]; }; + KnowSeq = derive2 { name="KnowSeq"; version="1.2.1"; sha256="09flwbmxz02wjh3730lywjkyfxb2kz5q6p8mb7d69m4sh38zsada"; depends=[Biobase caret class cqn e1071 edgeR ggplot2 gplots gridExtra Hmisc httr jsonlite kernlab limma multtest pathview praznik R_utils randomForest RCurl reshape2 rlist rmarkdown stringr sva XML]; }; + LACE = derive2 { name="LACE"; version="1.0.0"; sha256="1xkv6w4q9waqxsmj0r1p2km0y2jg04sbgz3sqpbsc46ncmzaf1zs"; depends=[igraph RColorBrewer Rfast SummarizedExperiment]; }; + LBE = derive2 { name="LBE"; version="1.56.0"; sha256="1ks7qryqqkkl0j081ip8j6k41gy2031bknpxkx0dv0g2gzsiflcc"; depends=[]; }; + LEA = derive2 { name="LEA"; version="3.0.0"; sha256="1ynzv0kdyy9sz3cf8izv47gy6nqm6znfcgsjqk7wc9xy3nn22a40"; depends=[]; }; + LINC = derive2 { name="LINC"; version="1.15.0"; sha256="0w9fildgdliq938kbiirhbs4i7nb918ggn080yh24wwya19b763s"; depends=[ape Biobase clusterProfiler DOSE ggplot2 ggtree gridExtra org_Hs_eg_db png Rcpp ReactomePA reshape2 sva]; }; + LMGene = derive2 { name="LMGene"; version="2.43.0"; sha256="1pj8kwdyb7hkj1jmng2zxmijrspjmfcysswlz4hjg0xn4xqi8kr5"; depends=[affy Biobase multtest survival]; }; + LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.14.0"; sha256="1psx9z3smc1v9mlbgnr13m2b4wz1cal5mry6fcczzs04qrg3sa0c"; depends=[CAMERA xcms]; }; + LOLA = derive2 { name="LOLA"; version="1.18.0"; sha256="1whpbny38a50q6ibzadzqwj1v1khm0y845wvshf8kqw0k9jsnviz"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; + LPE = derive2 { name="LPE"; version="1.62.0"; sha256="0f9l6zbkgqg389x4yf8v20fc1irvivjqdw1s0lr4z4rm1g71s9ln"; depends=[]; }; + LPEadj = derive2 { name="LPEadj"; version="1.48.0"; sha256="06skkc26ah4kxlvs8bmx27z5l38yp68d9dn7vbfh04gxcmc1cbi9"; depends=[LPE]; }; + LRBaseDbi = derive2 { name="LRBaseDbi"; version="1.6.0"; sha256="1dcwb1qjvyir29plkai4lslfhip4vnngkcch8n57fhvs5cgjwf27"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; + LedPred = derive2 { name="LedPred"; version="1.22.0"; sha256="0axqk5bf2wklqwvksd3pgd9filfbvs1klajcn5dwrw3yjlal0h33"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; + LineagePulse = derive2 { name="LineagePulse"; version="1.8.0"; sha256="0yiiqq3clg5h6gkwhwpqvlykssdw1vb4qs4hpxv6k5gsbyjp34ml"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + LinkHD = derive2 { name="LinkHD"; version="1.2.0"; sha256="13yp4y263i3mz2qkxv76prdkpfbvfcd4jfvhjj0kak5zaz05y9n3"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; + Linnorm = derive2 { name="Linnorm"; version="2.12.0"; sha256="143hdfswp5sda5al1igrm5gyn7a6mp1j7hjm5jsc300335lm3kgp"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; + LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.42.0"; sha256="0vsm5shnsd1j6lgmaxb6sr76r6kp58y202kj11zpziz8h4idkpbb"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; + Logolas = derive2 { name="Logolas"; version="1.11.0"; sha256="168v30xy4094xkv1k1pcja5m5gqf6737jbrvlfp4hzx75y57jcj3"; depends=[Biostrings ggplot2 gridBase LaplacesDemon SQUAREM]; }; + LoomExperiment = derive2 { name="LoomExperiment"; version="1.6.0"; sha256="0bqwvpjpidri0674rm1grdbc8fkwqdpkn7pifnvp1fmzp20rs4gl"; depends=[DelayedArray GenomicRanges HDF5Array Matrix rhdf5 rtracklayer S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + LowMACA = derive2 { name="LowMACA"; version="1.18.0"; sha256="09kv7wfp8h3shkmq9szarjgwhmp7zfiqnvfjk3f9ykn692jxyzyq"; depends=[BiocParallel Biostrings cgdsr data_table gridBase httr LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; + LymphoSeq = derive2 { name="LymphoSeq"; version="1.16.0"; sha256="1q22r0k4aiq7cvcwb8mazm3wh9lahfhxcd7w4lgi1dm7cifwjrbd"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; + M3C = derive2 { name="M3C"; version="1.10.0"; sha256="0zq8lm4280p8h65i7myscwa4srs5ajh944xv6zni2f5sjyp7ij2y"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; + M3D = derive2 { name="M3D"; version="1.22.0"; sha256="13dlb2gg08idvym1f8ccn65rn9x0v06ff7xlmghas80cz65spm1l"; depends=[BiocGenerics BiSeq GenomicRanges IRanges Rcpp S4Vectors SummarizedExperiment]; }; + M3Drop = derive2 { name="M3Drop"; version="1.14.0"; sha256="0l3gzakicn9n6fcylfzf4h8cc2v7arih9mhyi41jdalqbhycx7x4"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; + MACPET = derive2 { name="MACPET"; version="1.8.0"; sha256="0d4g8pf7qlm0pp1zcsknhlz974q4qc5d28yiypc89yd7nhkivb1q"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; }; + MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.2.0"; sha256="13fcrka1k1c4q7vmvpwip37midfd1ki4bkzlk4h4b4gnbff4scc0"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; + MADSEQ = derive2 { name="MADSEQ"; version="1.14.0"; sha256="16vzh5h4iblw0xmv29zcg9pln629zjnp185zar8mxml8l0fdj4f9"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM zlibbioc]; }; + MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="1.8.0"; sha256="0n649c8nn9snxc5n11303jaqwnsa1nnhiacsah9g272pqyrymq7z"; depends=[Biobase biomaRt clusterProfiler data_table dendextend DOSE enrichplot ggplot2 ggpubr ggrepel ggsci graph gridExtra KEGGgraph KEGGREST msigdbr pathview pheatmap png scales sva XML]; }; + MAIT = derive2 { name="MAIT"; version="1.22.1"; sha256="1aqb7isy691jj0xf1jqjr000pg6jz9rg7xc5am5g8wa3p8p9sv8x"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; + MANOR = derive2 { name="MANOR"; version="1.60.0"; sha256="04kdiw2ps0y1q9ipk6zfa4fsc6viadqzkqnfmrl7jxgmsadfv3na"; depends=[GLAD]; }; + MAST = derive2 { name="MAST"; version="1.14.0"; sha256="12d0q2fbq9d5jgyccmfv0cghv282s0j86wjfbnjpdf73fdrp6brr"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + MBASED = derive2 { name="MBASED"; version="1.22.0"; sha256="00mqcjb1hi9yvirqaw5kgg3qc030wr2ingfl102flv640kkv07ig"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; + MBAmethyl = derive2 { name="MBAmethyl"; version="1.22.0"; sha256="0zn93lwjk281iqxc6xs96ljqdg2y3kyzhv7mjwk3l18b64l3xq4n"; depends=[]; }; + MBCB = derive2 { name="MBCB"; version="1.42.0"; sha256="1kbky7krjz1h4bqc6n2xcsnpzlz7893v3zrh9xmd40d6s7vh2s1d"; depends=[preprocessCore tcltk2]; }; + MBQN = derive2 { name="MBQN"; version="2.0.3"; sha256="04hr2ynrqrx13l1cfw8cf4hrkps5zynx6kizi0vds2b1hrmc840g"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rpx SummarizedExperiment xml2]; }; + MBttest = derive2 { name="MBttest"; version="1.16.0"; sha256="1ff4xpaj8kxcvzv15cc0jkhyh50hab44zhyjdrnsq4rz9zzrz9x6"; depends=[gplots gtools]; }; + MCbiclust = derive2 { name="MCbiclust"; version="1.12.0"; sha256="1283kaxj4874alcqv5crc2a3kp75hx93mhdza8lr4c83mfl58izd"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; + MDTS = derive2 { name="MDTS"; version="1.8.0"; sha256="1vg2sriwkkqc1d7s4lj4rf96aj3shj7vfrkzmrhw1crswp10x3kk"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; + MEAL = derive2 { name="MEAL"; version="1.18.0"; sha256="17h6hr30vkyknkkc90l9ns5xq3kwpaj22izi7wh8hl43g58yka2a"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; + MEAT = derive2 { name="MEAT"; version="1.0.3"; sha256="18yzxs0j4zr59fk06hrb9zk6ah7rdhds7yygabv4vvy3fyc062n7"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; + MEB = derive2 { name="MEB"; version="1.2.0"; sha256="0yjw3mpk3cjya2vwx5c6zpnq8bwd2b7knirqml1lnm0p1qxgixlc"; depends=[e1071 SummarizedExperiment]; }; + MEDIPS = derive2 { name="MEDIPS"; version="1.40.0"; sha256="14y2ybanmvcxac86wfnhnq4mwjfmsqypg1n5a77rnhac5j0z1v88"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; + MEDME = derive2 { name="MEDME"; version="1.48.0"; sha256="1fdb2r8nvfjsyk526lybfyah0fg0sbirm0am4gwjb19w9yxvq4lm"; depends=[Biostrings drc MASS]; }; + MEIGOR = derive2 { name="MEIGOR"; version="1.22.0"; sha256="0m6x263a3cvaps6fpm78yrbv7c1qlr7n9njiphm1szsxa6fmzcw8"; depends=[CNORode deSolve Rsolnp snowfall]; }; + MGFM = derive2 { name="MGFM"; version="1.22.0"; sha256="0vz5yq3i8zz2igh8z8fvbbn5bb1hxp64ygnkj39mbsa03c4nq553"; depends=[annotate AnnotationDbi]; }; + MGFR = derive2 { name="MGFR"; version="1.14.0"; sha256="0d0l5awppjijfl39p9mrbwwpv6bcbnjk50qzkjsyd486iklnlxsx"; depends=[annotate biomaRt]; }; + MIGSA = derive2 { name="MIGSA"; version="1.12.0"; sha256="05qzqf92wxaz1w34zjzqskb5ssawrc0d3fn9xhvanpxcp4h5pmls"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz RJSONIO vegan]; }; + MIMOSA = derive2 { name="MIMOSA"; version="1.26.0"; sha256="0sfz5g8ryf88mnz4qr81285gipmprrgarr6lcyf4h0vc11qw4jdp"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; }; + MIRA = derive2 { name="MIRA"; version="1.10.0"; sha256="0hiclqmd6dvrn4jpa7avshk5l7ppywzz6f69w47wi3dqzp45nn41"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; + MLInterfaces = derive2 { name="MLInterfaces"; version="1.68.0"; sha256="0x3mnvb5a6kri4q5w0wfmx02v79my08zhmkaik9pqlprd7y5wynq"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny threejs]; }; + MLP = derive2 { name="MLP"; version="1.36.0"; sha256="04ywvj9296135a9n2rq8nkgzvdgj2c9h7rxwpy06y1gddspjqbln"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; }; + MLSeq = derive2 { name="MLSeq"; version="2.6.0"; sha256="0wzcp2yy8xhywilq91ik9ab54w8p5gm1z2nwasfdbfzkgz689yq1"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma plyr sSeq SummarizedExperiment xtable]; }; + MMAPPR2 = derive2 { name="MMAPPR2"; version="1.2.0"; sha256="0m5j3dxfyqk3vdwypq5sv2ishxi1zskk4qhcflngda0c6q0908gk"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; + MMDiff2 = derive2 { name="MMDiff2"; version="1.16.0"; sha256="0wd95qf50qh97vjrpz5qgmj1cbqyr6dgif0ajgmgf91p8sags6jf"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; + MMUPHin = derive2 { name="MMUPHin"; version="1.2.0"; sha256="08gclvqjirxw2nyizk9awzhrqqhgxrxk0h210kn56d804xv0az0c"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor tidyr]; }; + MODA = derive2 { name="MODA"; version="1.14.0"; sha256="1smi206qm2mlmj889cx137ral10nq3va9ng33z1gm89pa5xbfrcq"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; + MOFA = derive2 { name="MOFA"; version="1.4.0"; sha256="0wjc3k9bqdjrwa25a430rb2sh7bj4s692hmd7iy01wcph7nhaq4g"; depends=[Biobase corrplot cowplot doParallel dplyr foreach GGally ggbeeswarm ggplot2 ggrepel MultiAssayExperiment pheatmap RColorBrewer reshape2 reticulate rhdf5 scales]; }; + MOMA = derive2 { name="MOMA"; version="1.0.2"; sha256="1rdw3yafr9f9dr6iwb8dlh5yfi9cppvx2l1h6zc20p31df9qwy81"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; + MOSim = derive2 { name="MOSim"; version="1.2.0"; sha256="063aspwbqhcf578qi5ryj3fzrr8wby14r40vxb1ckx7ca3pcxvxw"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; + MPFE = derive2 { name="MPFE"; version="1.23.0"; sha256="09n55k60n86mqv7mm6ms17qbvm6s5963bmclz3wp6pb1zqhzjnxb"; depends=[]; }; + MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.6.0"; sha256="1sc62bk6dp6c34a9q5x5j1a81s4jrxrrkj56348581k56i6rlk0i"; depends=[BiocParallel progress SummarizedExperiment]; }; + MSGFgui = derive2 { name="MSGFgui"; version="1.22.0"; sha256="16s4zlps57sjkdkm1gkx8ypmpvl7dcngiv82m944mrvsk3xkac54"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; + MSGFplus = derive2 { name="MSGFplus"; version="1.22.0"; sha256="14g2wf4h8qsldv2s07viizq37q6r7fnb31hb2qkyynx1hxyw1f7d"; depends=[mzID ProtGenerics]; }; + MSnID = derive2 { name="MSnID"; version="1.22.0"; sha256="0dwa6j2nqb3223a8g4f453aznjh69wngrpvdi12iy69j1psbbjcc"; depends=[Biobase data_table doParallel dplyr foreach iterators MSnbase mzID mzR ProtGenerics R_cache Rcpp reshape2]; }; + MSnbase = derive2 { name="MSnbase"; version="2.14.2"; sha256="17vlv9gh41s1hp043b7j1jfqiw52alh1misjzy1kxl0g90rld00l"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp S4Vectors scales vsn XML]; }; + MSstats = derive2 { name="MSstats"; version="3.20.1"; sha256="0y2bswgvpyfiz470j01lsjiyhxig23m47rl1x0b3qrckl2gp0ayc"; depends=[broom data_table doSNOW dplyr foreach ggplot2 ggrepel gplots limma lme4 marray MASS minpack_lm preprocessCore purrr reshape2 snow statmod stringr survival tidyr]; }; + MSstatsQC = derive2 { name="MSstatsQC"; version="2.6.0"; sha256="1nbr01ybx4a764w5hfgpyzhp893lcajrwansxl9sarfj600xl50i"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; + MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.8.0"; sha256="11dawln2v70m0x6n5ybkpnb1xz2jzvx4440s33s87algnsgaiy5s"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; + MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.2.0"; sha256="1nz70ixbb948izqziip1hla83kzj386y1czinf7af71x7ic8hw77"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; + MSstatsTMT = derive2 { name="MSstatsTMT"; version="1.6.3"; sha256="1xwcsfdskbqndxvwv8yv6458953dfkdzamvcrk7gzqlpxkmck7fh"; depends=[data_table dplyr ggplot2 limma lme4 lmerTest matrixStats MSstats reshape2 statmod tidyr]; }; + MVCClass = derive2 { name="MVCClass"; version="1.62.0"; sha256="0vjw6dr7h0d71jknxwlm34xrgp7nm5y8mir5l4qqa5bnn148qzqk"; depends=[]; }; + MWASTools = derive2 { name="MWASTools"; version="1.12.0"; sha256="0v9rwhalsv4kiwqcbcrhhx17flgpqcvkkpv0z8gm4f867pdsln0a"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; + Maaslin2 = derive2 { name="Maaslin2"; version="1.2.0"; sha256="1jickmbz84z25klg5bhq5p1vr45j0gd9ifzrki4wvqjbi69pp3wl"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 hash lmerTest logging lpsymphony MASS metagenomeSeq MuMIn optparse pbapply pcaPP pheatmap pscl robustbase vegan]; }; + MantelCorr = derive2 { name="MantelCorr"; version="1.58.0"; sha256="063nszp9qp796vjqcb3kzf4d2ppi29y7n8xs3pixidgby1z47qfd"; depends=[]; }; + MassArray = derive2 { name="MassArray"; version="1.40.0"; sha256="1yzdd77xp38z8z3c298gikmwabdgdklznmpb9fisqgy856bgf8rl"; depends=[]; }; + MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.54.0"; sha256="0nv1r68g7f1rps6sqaccd4n4x0i19wklvyabhp4b03cdk22gl3nq"; depends=[waveslim]; }; + MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.0.2"; sha256="10yj56frkh9rf6bhxdb0kpcg55id9aczqjh6d5bxb6xmwrq1qwf1"; depends=[matrixStats]; }; + MatrixRider = derive2 { name="MatrixRider"; version="1.20.0"; sha256="0jm042y1xynpsjzy3idl4sb2h2zjvr352f7x3slrw3l02i71lz0d"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; + MaxContrastProjection = derive2 { name="MaxContrastProjection"; version="1.11.0"; sha256="01lf1nfni5219n158vn973wpqp0djhk5lifr23dk1dxxwn0fnnjw"; depends=[EBImage]; }; + MeSHDbi = derive2 { name="MeSHDbi"; version="1.24.0"; sha256="0kly4x4af64cij2avp3az3bdib762b32y71k3bfwxbp2g12pixdc"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; }; + MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.60.0"; sha256="0br7s5ixwm0pknm8dzlhbh9y6pplyhwf11lf8cf1izb0yd16yswb"; depends=[]; }; + Melissa = derive2 { name="Melissa"; version="1.4.1"; sha256="0ajy7zc2xsf4n27ddc3lf70hazja5m03cgz6qrl370cghh52x66g"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; + MergeMaid = derive2 { name="MergeMaid"; version="2.59.0"; sha256="010ilmjg69lzqm8zv19d497hk5y7sfxrx6kgswi70d4hv0az6agc"; depends=[Biobase MASS survival]; }; + Mergeomics = derive2 { name="Mergeomics"; version="1.16.0"; sha256="173yvwjvd1gzys2bmv4mnh5dywimghgzhqqqixv32fqc94ijzjg7"; depends=[]; }; + MetCirc = derive2 { name="MetCirc"; version="1.18.0"; sha256="0zk5i0f8wvsrxbx96p10rlxfc9dvhpks18c6h4hnpznb3x7i6vag"; depends=[amap circlize ggplot2 MSnbase S4Vectors scales shiny]; }; + MetID = derive2 { name="MetID"; version="1.6.0"; sha256="1mhdp6ayc17bi9r9kbxhkp929x8bvr7pcr4m4j6sxnl0pzyfg3i0"; depends=[ChemmineR devtools igraph Matrix stringr]; }; + MetNet = derive2 { name="MetNet"; version="1.6.0"; sha256="1lk14wq63a872akbndc7bhhqmc25vzcxw6s9k4xg0xxbxi59mvjn"; depends=[BiocParallel bnlearn GENIE3 mpmi parmigene ppcor sna stabs]; }; + MetaCyto = derive2 { name="MetaCyto"; version="1.10.0"; sha256="1bb4zqkpdjw394pcg7f592xh18yjl852njmj9d68bpfqfxbbs9ld"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; + MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.8.0"; sha256="11xc3g5mx10v24sa3i2000z30g4gx677ah9fbmaqd0r8zzh6c9r0"; depends=[beanplot GenomicRanges gplots Matrix matrixStats RColorBrewer Rcpp SummarizedExperiment]; }; + MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.2.0"; sha256="0mx57dn7qqz1wsb31fqmgzsqk0n7g5hqb8yxqa7v40v89p447mfb"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; }; + Metab = derive2 { name="Metab"; version="1.22.0"; sha256="1jk2j1922wzbg1wb22jy2iv70fd3ylwkb69rmh5783sc169xga5c"; depends=[pander svDialogs xcms]; }; + MetaboSignal = derive2 { name="MetaboSignal"; version="1.18.0"; sha256="1dgl03l8v4adls44i1s5ax1nif787ypfj1y1842rw8yllaw1q2yp"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; + MethCP = derive2 { name="MethCP"; version="1.2.0"; sha256="1jnmmyffmniqhxl5fvh7s05pi7s2d8jhczh15bc7icfs6i1yly5d"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; }; + MethPed = derive2 { name="MethPed"; version="1.16.0"; sha256="17qxmfgdm9v2y2n171k5x4ij25w8dc62ifl6hj97jyvi97rxxfq9"; depends=[Biobase randomForest]; }; + MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.20.0"; sha256="0bvnx5nk69bdmb57bd3hhnjl79hxgbpdinz1n3711g0qr2g0xnbs"; depends=[Biostrings gplots seqinr stringr]; }; + MethylAid = derive2 { name="MethylAid"; version="1.22.0"; sha256="0k206bp2kympda9k8s5nkvh362rk3mjfygj9m3q072y65kyih549"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; + MethylMix = derive2 { name="MethylMix"; version="2.18.0"; sha256="1xq9i8b1hkm2ajgz0rd39kf52ld6r5hm2kml0gzp2px2b7fj3hh3"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; + MethylSeekR = derive2 { name="MethylSeekR"; version="1.28.0"; sha256="1pwkr5mpfs8vlczdkskibykg2s72vxibnnbs5mcgaraq908231a7"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; + Mfuzz = derive2 { name="Mfuzz"; version="2.48.0"; sha256="0kdhraa5xvaywrhk6i0dsklanjr6zbn08ls4l7fh12i5d0ww1fnl"; depends=[Biobase e1071 tkWidgets]; }; + MiChip = derive2 { name="MiChip"; version="1.42.0"; sha256="07d4cy4c0hk9jp6i03plq4g8vh4bwrhh9ld7zphvkc16my06sisf"; depends=[Biobase]; }; + MiPP = derive2 { name="MiPP"; version="1.60.0"; sha256="19xflq3ydcp1zsrgcym9s91nijgvm85br6qakym99x4a0brrqcvg"; depends=[Biobase e1071 MASS]; }; + MiRaGE = derive2 { name="MiRaGE"; version="1.30.0"; sha256="0533v0vsx1m9jbdbbdzl02szr6dhyjar7h6pvh99k403qy63hzvw"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; + MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.0.5"; sha256="0vvyqvjpln01433s4s5gjf1hcpn2i1ibji4b6iddb800lkd8mwkn"; depends=[ape biomformat Biostrings coin DECIPHER dplyr ggplot2 ggrepel ggsignif ggtree gtools magrittr MASS patchwork phangorn phyloseq plyr randomForest rentrez reshape rlang Rmisc scales tibble tidyr tidytree vegan yaml zoo]; }; + MineICA = derive2 { name="MineICA"; version="1.28.0"; sha256="031blxwfj27f9qy83b2qd3yxmx0kvhg3zhbsaqsyfn0dy7pa3mk8"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; + MinimumDistance = derive2 { name="MinimumDistance"; version="1.32.0"; sha256="13qxzhc6wy18ag9v1klhhn75q4m115x9h3wsssr4d37dmhn9j11r"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; + Mirsynergy = derive2 { name="Mirsynergy"; version="1.23.0"; sha256="0xack1xmhbsadv58pizprhzgfpn1vg8g1j7vc2yinywjwmydsvfm"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; }; + MmPalateMiRNA = derive2 { name="MmPalateMiRNA"; version="1.37.0"; sha256="0f2h9q3knw6qpb285j854agvg0yidvr9flb1js8gz4wc2g8x099f"; depends=[Biobase lattice limma statmod vsn xtable]; }; + MoPS = derive2 { name="MoPS"; version="1.21.0"; sha256="0d67c8d6v8p5cx5vbrh8r2isq3pn52wf23r2p2qpkfsrrkyjl0q2"; depends=[Biobase]; }; + Modstrings = derive2 { name="Modstrings"; version="1.4.1"; sha256="1whz9jx51dp4950cpmsk3c58lkzv7b0grmn6q6ariw2ynv3rzkfp"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; + MoonlightR = derive2 { name="MoonlightR"; version="1.14.1"; sha256="182hngm4fyb2m4j3v31qz0xm6mxzpb7ryyy3d5lgnbh8ch7w61k4"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; + MotIV = derive2 { name="MotIV"; version="1.43.0"; sha256="1yqqymcrnwlpv6h3w80yliv19922g32xqlqszaqjk6zp853qilh6"; depends=[BiocGenerics Biostrings GenomicRanges IRanges lattice rGADEM S4Vectors]; }; + MotifDb = derive2 { name="MotifDb"; version="1.30.0"; sha256="0ixmdqp0s0xv9ar85n2wirbbssrzlk8a892wam55jdsf9y8aabkm"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; + MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.0.0"; sha256="0y172ahcq6nyrwzcpay22ldgwysh7yxxqbm8bzaylpyvln1mvgnq"; depends=[MASS Rcpp S4Vectors]; }; + Mulcom = derive2 { name="Mulcom"; version="1.38.0"; sha256="1qjlbxxzl9xxpa7pwn9cmh9b38kzlk6nyk5axlv900nwh2cf8q34"; depends=[Biobase fields]; }; + MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.14.0"; sha256="0qlfnd86999jqv2nd0ikixi2sfd449dyg3ml4nbs8ycs57c2irgh"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; + MultiDataSet = derive2 { name="MultiDataSet"; version="1.16.0"; sha256="0hjnj32m9wwlh2krdpdyl5jk1cakvlgki80z51mabhc62pajzf39"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; + MultiMed = derive2 { name="MultiMed"; version="2.10.0"; sha256="0lblnr9c587v16mrk0fz9im9qmz97q9c8cbdl734gaq05y2nsj31"; depends=[]; }; + MutationalPatterns = derive2 { name="MutationalPatterns"; version="2.0.0"; sha256="02lyjiabyhmifycksvpcx29a0pb7z9xjw0hgg8n0sd0dy3afqhcm"; depends=[BiocGenerics Biostrings cowplot GenomeInfoDb GenomicRanges ggdendro ggplot2 IRanges NMF plyr pracma reshape2 S4Vectors SummarizedExperiment VariantAnnotation]; }; + NADfinder = derive2 { name="NADfinder"; version="1.12.0"; sha256="1np3ss5qva479gm97mixqpf353b0yc44xwff04pyqav1qhfqcw32"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; + NBAMSeq = derive2 { name="NBAMSeq"; version="1.4.1"; sha256="0hz1nkfya25n1k2q8zjdjj2dy54aivb1mnchv9wfxs0mk6vwxkgg"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; + NBSplice = derive2 { name="NBSplice"; version="1.6.0"; sha256="1lbk3df1lk51abcjrpcc13bhblgxkq77dhyrfg93hs9bib2ka40b"; depends=[BiocParallel car edgeR ggplot2 MASS mppa reshape2]; }; + NCIgraph = derive2 { name="NCIgraph"; version="1.36.0"; sha256="029izgilsf5r7wnnm6mpb6qcfn1bpz4avj6wgr4zjnl1gfix5kjf"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; + NOISeq = derive2 { name="NOISeq"; version="2.31.0"; sha256="0lg3za0km6v9l6dxigbxx6nsx9y6m3dyzh9srngi53s8387vhj33"; depends=[Biobase Matrix]; }; + NPARC = derive2 { name="NPARC"; version="1.0.1"; sha256="01hnyyhysp4aqcz19kbvjwg7gzh5lr13p7m8hvkiigg7ssk2ya9m"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; + NTW = derive2 { name="NTW"; version="1.38.0"; sha256="1ja09axddsj23klkp5bqxrmav9mikc2lzdldrg07is03pdfbx9sb"; depends=[mvtnorm]; }; + NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.18.0"; sha256="0d4p68lvgvf10bzdvixnpk8c64glbgd249izwawv3i651277398i"; depends=[Biobase matrixStats Rcpp]; }; + NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.20.0"; sha256="1s2y7mqav9za0wq1khsllvw87nmdjzc01jjmr52symdq5523y479"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; + NarrowPeaks = derive2 { name="NarrowPeaks"; version="1.31.0"; sha256="1a1rdnnyvi1yy8ikki1mvzk24hyyqx9y7xh03lf5zm9qx4jas5qw"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; }; + NeighborNet = derive2 { name="NeighborNet"; version="1.6.0"; sha256="19wa24fb4b4rxyyvzb06psfpmzb580h0m659fmf12qkz0n9g41jx"; depends=[graph]; }; + NetPathMiner = derive2 { name="NetPathMiner"; version="1.24.0"; sha256="1m9m2g8b6y5s1mqpx4avny200g8hidrqa1qrvzq2fz7q89g5apxy"; depends=[igraph]; }; + NetSAM = derive2 { name="NetSAM"; version="1.28.0"; sha256="0lqdhgxk044c66w0ahqs3w06p1hlcc7srqg6486qypjqrpa6fznj"; depends=[graph igraph seriation]; }; + NoRCE = derive2 { name="NoRCE"; version="1.0.0"; sha256="1q9ncgqxc846sl6p5nws1i6c4i4x9qcg73n570ydnn7wq8g1i8dh"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors SummarizedExperiment tidyr zlibbioc]; }; + NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.6.0"; sha256="1ijgljwi547n4b4z77h3rx7pfapkgzxzbaia44dgl0433sjcfyj5"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; + NormqPCR = derive2 { name="NormqPCR"; version="1.34.0"; sha256="0aq9gf490vf7ish33lq8ydbiscxbqbcbgvf0x1f4kgbps0bz46y2"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; + NuPoP = derive2 { name="NuPoP"; version="1.38.0"; sha256="08y123zyl2hp3jivz485699s0k0g7ldmq5gzy2l0bl87hk9fpyb4"; depends=[]; }; + OCplus = derive2 { name="OCplus"; version="1.62.0"; sha256="18cy2rm4xrlmzmvl7qskamd88fkd1d5ymayhhzf7afskmn3ssnnk"; depends=[akima multtest]; }; + OGSA = derive2 { name="OGSA"; version="1.17.0"; sha256="1a5q3w5ca7ji6l1cydj7rbnjh3jayznmxmsaf9g9ji4pyh90bba7"; depends=[Biobase gplots limma]; }; + OLIN = derive2 { name="OLIN"; version="1.66.0"; sha256="0knmjnsdm264n072gn2smcq519gnykdiypppsmkqsg9mkaq3nyd7"; depends=[limma locfit marray]; }; + OLINgui = derive2 { name="OLINgui"; version="1.62.0"; sha256="05si2bln02mhczwvqsz2m5g46f511p226lfcddsxsy19qq301jdc"; depends=[marray OLIN tkWidgets widgetTools]; }; + OMICsPCA = derive2 { name="OMICsPCA"; version="1.6.0"; sha256="0d3h3lpy0k099ja59sqjr5ca3czk20qf0nlzslnh4d5vlp60z7vh"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; + OPWeight = derive2 { name="OPWeight"; version="1.10.0"; sha256="1plhy2klsl104vxqhd3yf87w0r5075vhq59p248b8100hl9vjg10"; depends=[MASS qvalue tibble]; }; + ORFik = derive2 { name="ORFik"; version="1.8.1"; sha256="185kp4l3pqc8v6dqg6b6lxqnb4y7043677hnidx5yqpp31fkkx49"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table DESeq2 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + OSAT = derive2 { name="OSAT"; version="1.36.0"; sha256="0j5qhsla3b4sfhd5i8pn1mn1zj885x88mpc421r33mw259i7a8r6"; depends=[]; }; + OTUbase = derive2 { name="OTUbase"; version="1.38.0"; sha256="12ysm7fhkpi0jza71a48jkllf4dz11g13712ciprqnxqr93afs7n"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; + OUTRIDER = derive2 { name="OUTRIDER"; version="1.6.0"; sha256="1rw4bms5zsd263v6dk9k4n46wymfkqacjlv25d697y7rylcvybin"; depends=[BBmisc Biobase BiocGenerics BiocParallel data_table DESeq2 GenomicFeatures GenomicRanges ggplot2 gplots heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; + OVESEG = derive2 { name="OVESEG"; version="1.4.0"; sha256="02skny8ndwm1afm7sb1g64l78vx64yi02f7isc3rcbcfdkpzsf8f"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; + OmaDB = derive2 { name="OmaDB"; version="2.4.0"; sha256="0flvx8bai79j4krlmhjmgvbwmgk9w10f1h0k9dzhdz104csgpbmw"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; + OmicCircos = derive2 { name="OmicCircos"; version="1.26.0"; sha256="062m61f69fs2ld11g27pwpwm6vri19i447spi2lac458wkn0hq00"; depends=[GenomicRanges]; }; + OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.4.0"; sha256="1wpjahylrsqi7xjvbjwfrmlv9ybfy9yibmypkznf093gr36b5dw6"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; }; + OmicsMarkeR = derive2 { name="OmicsMarkeR"; version="1.19.0"; sha256="13610jgrh432vnssx5yc711ypj4c2fhajd5d6igjyl4mw687pq76"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; }; + OmnipathR = derive2 { name="OmnipathR"; version="1.2.1"; sha256="0b3qk9a0kl5msz2l9aydypwq39q76gp4mr2lzjgq5fcd94x0j078"; depends=[dplyr igraph rlang]; }; + Onassis = derive2 { name="Onassis"; version="1.10.0"; sha256="0i0znkyz3q2skbz0bnhwmnxbw7q6b294z70s4yqfz2ls8w8hfiz6"; depends=[AnnotationDbi clusteval data_table dendextend DT GEOmetadb ggfortify ggplot2 knitr OnassisJavaLibs RCurl rJava RSQLite Rtsne]; }; + OncoScore = derive2 { name="OncoScore"; version="1.16.0"; sha256="17hm73skzqij4y5z6m5c27jf8wpm0qsl5qs34a5f8da4za0r5iw6"; depends=[biomaRt]; }; + OncoSimulR = derive2 { name="OncoSimulR"; version="2.18.0"; sha256="1pb7gscx2dr9q6l33b7x6ikqwz8v3zhhvxrya5450sapg4sdvabq"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr]; }; + OpenStats = derive2 { name="OpenStats"; version="1.0.2"; sha256="0ndlb35i4yvvdnzk7limbsgnh4nbq922h5g91w5lzjg34gmsa89j"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; + OrderedList = derive2 { name="OrderedList"; version="1.60.1"; sha256="18jgv2zv9w6kvxivmx0iz87dggrcz9fj4ibr2x0yk1c4pq28hf23"; depends=[Biobase twilight]; }; + Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.16.0"; sha256="1f0wzg6klr9kw5h7b82sxz727zh5vg9ka6m85y1c5886hcwndnw7"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges RSQLite S4Vectors tibble]; }; + OrganismDbi = derive2 { name="OrganismDbi"; version="1.30.0"; sha256="194h5576inq44qr666snzq0ygnc77rk5ljkn9bn8zs6x6gb3cwaw"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; + Oscope = derive2 { name="Oscope"; version="1.18.0"; sha256="09w47glvfcil6cc55f26ndvgmw1rdmzbp4bdyv4cmwcl41hdci7j"; depends=[BiocParallel cluster EBSeq testthat]; }; + OutlierD = derive2 { name="OutlierD"; version="1.52.0"; sha256="0qhw5zr3d5dxa1mcqhzbamgzydk27zd009laibh3c4nn5107p7f9"; depends=[Biobase quantreg]; }; + PAA = derive2 { name="PAA"; version="1.22.0"; sha256="1g15f0f84r8fdlq1ifbypzg25jv4sa30r0w8l5c5a5qvi902hlsc"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; + PADOG = derive2 { name="PADOG"; version="1.30.0"; sha256="1zgyr3arzmc54h19jcq7rs883n63fkgjqn4z8g41rlfgmhzynk0a"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; + PAIRADISE = derive2 { name="PAIRADISE"; version="1.4.0"; sha256="1f9s1kxqljfazsxpi24kppabpbi45hk6j8v8xqgk3ivxhbhvgbkl"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; + PANR = derive2 { name="PANR"; version="1.34.0"; sha256="12dan58ccd677rb75dsvvd7lhbzdydfz7fwzgafc4kiixnhdxcrh"; depends=[igraph MASS pvclust RedeR]; }; + PAST = derive2 { name="PAST"; version="1.4.3"; sha256="1n2gk4b6lyxnrmyh0w4sp2xjg6dnvwn6fsyaddj0j566kmss359z"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; + PCAN = derive2 { name="PCAN"; version="1.16.0"; sha256="1wr5djwfgyp7703s5kk2zd7x6x40933q06cq3ljzq0wqb6val9ir"; depends=[BiocParallel]; }; + PCAtools = derive2 { name="PCAtools"; version="2.0.0"; sha256="0mnwqrhm1hmhzwrpidf6z207w1ycpm572snvpp5swlg6hnxq6bnc"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; + PCpheno = derive2 { name="PCpheno"; version="1.50.0"; sha256="1wgvq9hvbnr01rbkigs43lky7bh5vcz3ixqlq0w5dwsgkklxwfbs"; depends=[annotate AnnotationDbi Biobase Category GO_db graph GSEABase KEGG_db ppiData ppiStats ScISI SLGI]; }; + PECA = derive2 { name="PECA"; version="1.24.0"; sha256="0y84f8hnb0wx9981lawnn29v5hl2ly9jw6q1384qxmhsd1al657q"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; + PERFect = derive2 { name="PERFect"; version="1.2.0"; sha256="10nhmjxnplp03lq1dxk07axdf8a2c50z0s5gyiwwrws4m1732mys"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; }; + PGA = derive2 { name="PGA"; version="1.18.0"; sha256="1wjr80d8s334wd5ai0wc5b9372l8rx85l4rvjc84g3xccdvr4ld6"; depends=[AnnotationDbi biomaRt Biostrings customProDB data_table dplyr GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap processx RCurl readr Rsamtools RSQLite rTANDEM rtracklayer S4Vectors seqinr stringr VariantAnnotation]; }; + PGSEA = derive2 { name="PGSEA"; version="1.61.0"; sha256="05dd1wrzzsfzhb3zpc1dh10dpywj2jxdwy2hiqsbzm0ybnx4cfnx"; depends=[annaffy AnnotationDbi Biobase GO_db KEGG_db]; }; + PICS = derive2 { name="PICS"; version="2.32.0"; sha256="1vyf99llhbmwih0cxmzbsq0chfdgb6q0clhmmdvy2pz8dq3clc7m"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; + PING = derive2 { name="PING"; version="2.32.0"; sha256="05b3fvlnykrqjshqngvy7w2z23h2b0bnk5hxgcpw9hbkii92kv60"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; + PLPE = derive2 { name="PLPE"; version="1.48.0"; sha256="10xxi8rbs9c2rgj0yw7ha29q1jwb14v2wjqhlyrl7x66cklnbk2m"; depends=[Biobase LPE MASS]; }; + POST = derive2 { name="POST"; version="1.12.0"; sha256="1nkqqz05bg046gl3qfwvhwrf1kjv5990pw8pmhg86ilwm58fpkmc"; depends=[Biobase CompQuadForm GSEABase Matrix survival]; }; + PPInfer = derive2 { name="PPInfer"; version="1.14.0"; sha256="02v8xdghn347g7x41laz80kj6gqsyw7m7bzmrh1ivsfsmrji5bfp"; depends=[biomaRt fgsea ggplot2 igraph kernlab STRINGdb yeastExpData]; }; + PREDA = derive2 { name="PREDA"; version="1.34.0"; sha256="16761angnk5xhm17kd498s6ib6lq0bwds36vy12y1klykhi8ryxr"; depends=[annotate Biobase lokern multtest]; }; + PROMISE = derive2 { name="PROMISE"; version="1.40.0"; sha256="0ai27l0yh8hz9y6zvk2dp91jz77dfff8kmkzdz2v1bm9qbi8q6gp"; depends=[Biobase GSEABase]; }; + PROPER = derive2 { name="PROPER"; version="1.20.0"; sha256="083nvw2vzl4s2w1rgi8s9i0lc4591iyanx98hqarv0hgzsa3ywi9"; depends=[edgeR]; }; + PROPS = derive2 { name="PROPS"; version="1.10.0"; sha256="17v9h7pb0wgrlahrqgp85x7g04fm7fqmlpjyfvfw3bg7cy8z3v0j"; depends=[Biobase bnlearn reshape2 sva]; }; + PROcess = derive2 { name="PROcess"; version="1.64.0"; sha256="0z7q8425va53bfawjyysly56k2l86r38nv73hdx5ivxvjc3m0pyj"; depends=[Icens]; }; + PSEA = derive2 { name="PSEA"; version="1.22.0"; sha256="0v468b6j42ncfhdwxjb6kdxpsmw3cxk61ra3pji80ipv6cqcyxaf"; depends=[Biobase MASS]; }; + PSICQUIC = derive2 { name="PSICQUIC"; version="1.26.1"; sha256="1756azhslvjx49f0f4r8d9ffk6s15j8ng31i6js45r3z2q8vmbci"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; + PWMEnrich = derive2 { name="PWMEnrich"; version="4.24.2"; sha256="0gryhcw2dn2ymxhr8cjpsdjpvgy2qjvv6z32f5wnkkd0mhzlp5m4"; depends=[BiocGenerics Biostrings BSgenome evd gdata seqLogo]; }; + PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.16.0"; sha256="0f7d0ja3yxnycczx8hyhyvkmg882r25bzp56vgrpy3i0d63skhhf"; depends=[FindMyFriends igraph jsonlite pcaMethods shiny]; }; + Path2PPI = derive2 { name="Path2PPI"; version="1.18.0"; sha256="0fl5dmkvyvg00rrn07dahb62wq3c4agxn30aifb4lxficnyzf64v"; depends=[igraph]; }; + PathNet = derive2 { name="PathNet"; version="1.28.0"; sha256="0yz1miqkdq33qxccyc343bmxrpagrn1mdjd0jz7xjcpgxzb1wfc6"; depends=[]; }; + PathoStat = derive2 { name="PathoStat"; version="1.14.0"; sha256="0b3rhzcjvi0n6x46bkavgwis08jf8pld38mg3srkw1l6s65ipcaz"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; + PathwaySplice = derive2 { name="PathwaySplice"; version="1.11.0"; sha256="0645k6gipcgs4zp2yfyj9ylh358lzfcfpzh06ky2jg6dh0zilbjj"; depends=[annotate AnnotationDbi AnnotationHub BiasedUrn Biobase BiocGenerics DOSE dplyr EnrichmentBrowser ensembldb gdata geneLenDataBase GO_db goseq gplots gridExtra htmlwidgets igraph JunctionSeq KEGGREST mgcv org_Hs_eg_db org_Mm_eg_db plotly RColorBrewer reshape2 S4Vectors tibble VennDiagram webshot]; }; + PepsNMR = derive2 { name="PepsNMR"; version="1.6.1"; sha256="12fr13bn576xgqwgss0kskx695gqqiizv9j53xn55ya8r739ahl7"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; + PharmacoGx = derive2 { name="PharmacoGx"; version="2.0.5"; sha256="18xc66dw9bp33nl4whfl3nyz60wy72sralk1jmnwikyk4j2vn28i"; depends=[Biobase BiocParallel caTools CoreGx downloader ggplot2 jsonlite magicaxis RColorBrewer reshape2 S4Vectors SummarizedExperiment testthat]; }; + PhenStat = derive2 { name="PhenStat"; version="2.24.0"; sha256="0yg1gpm2qz0q2x3v8yl472x16r590vh1knc9x17kjjh58fk8lr7v"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; + PhyloProfile = derive2 { name="PhyloProfile"; version="1.2.8"; sha256="0zlfxq2s28jfmklki6hnxfkvj88j6b0l02jgc126iy6cxgpkmppk"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer shiny shinyBS shinyjs xml2 zoo]; }; + Pi = derive2 { name="Pi"; version="2.0.2"; sha256="1yq2pgaj62ysfd29815ja90g58shbxrvirsdzdsh7vkp8ml8wwr4"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggbio ggnetwork ggplot2 ggrepel glmnet Gviz igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; + Pigengene = derive2 { name="Pigengene"; version="1.14.0"; sha256="1j32bmjksz6ywkgdqzzl60arjpcaqpf0dyz8x13xnigkj8rf2gj7"; depends=[bnlearn C50 dplyr gdata GO_db graph impute MASS matrixStats partykit pheatmap preprocessCore Rgraphviz WGCNA]; }; + PloGO2 = derive2 { name="PloGO2"; version="1.0.0"; sha256="1cizkdp5wc6pi2cip77n2qd4lisjwckqsic82mnr9fwb41i95wwc"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; + PoTRA = derive2 { name="PoTRA"; version="1.4.0"; sha256="1kark8hn5yb0visn7r02qqy54mfw46ypdh7wnvckwnkb5dbyh5ff"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; }; + Polyfit = derive2 { name="Polyfit"; version="1.22.0"; sha256="1hkj2amw5flr2mzcshq96n03k9ld3786rrzhjxpyqjzv9500vjsa"; depends=[DESeq]; }; + PowerExplorer = derive2 { name="PowerExplorer"; version="1.7.0"; sha256="13mkj1syi5h3ka1yx8lc2wlxx46ggrwdab8rpvifdlpar9byqsbm"; depends=[Biobase BiocParallel data_table DESeq2 ggplot2 gridExtra MASS ROTS S4Vectors SummarizedExperiment vsn]; }; + PrInCE = derive2 { name="PrInCE"; version="1.4.0"; sha256="080y1iijc48x78f5i3rgzyb0nfsx7i046r0nrfkg7fs7680c1ky4"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; + PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.4.0"; sha256="18yfc52i3sw622k65m6fwvxsnv3mkyxl9spc3sgdzyfkrkc3wrf0"; depends=[BiocParallel biomaRt brglm cgdsr data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; }; + Prize = derive2 { name="Prize"; version="1.17.0"; sha256="01h1qra2jjwhfczzkjkmkayhbc4hy6f17b8khlyc1ca24bay5dkw"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; }; + Prostar = derive2 { name="Prostar"; version="1.20.0"; sha256="1k8c8aglp81vy7snnm4k6kv0asx840l8x1wcvpfhq3zzvdn0cap6"; depends=[BiocManager colourpicker DAPAR DAPARdata data_table DT future highcharter htmlwidgets later promises R_utils rclipboard rhandsontable sass shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets tibble webshot XML]; }; + ProtGenerics = derive2 { name="ProtGenerics"; version="1.20.0"; sha256="14xzdh7vxss8vmrw91hcwrszdn3ikm71mah8875b2lkrkrfzbl73"; depends=[]; }; + ProteoMM = derive2 { name="ProteoMM"; version="1.6.0"; sha256="0cfy1740wx4x2pivdrj304pscgmrianr3hbbq6s1ii0rhifmdla1"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; + ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.18.0"; sha256="0g6ks0r2vs11cz33ib02565kqaqnkkvqkivkj9nxwr14hgx7zr5g"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; + PubScore = derive2 { name="PubScore"; version="1.0.0"; sha256="06y88680kqccgmx1s46awyy7blw002208q9jyzpkgcd1vbdl987f"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; }; + PureCN = derive2 { name="PureCN"; version="1.18.1"; sha256="10gch6q08h1rylhsi5m4m7q8ixi1fkd5i114lpzf7d0hsyzq04fp"; depends=[BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; + Pviz = derive2 { name="Pviz"; version="1.22.0"; sha256="0n6gfj3ydh3qgz9d7596b983xd7hjwavh1r04w1jppjwk5azdrhm"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; + QDNAseq = derive2 { name="QDNAseq"; version="1.24.0"; sha256="1ji9pl2r1idyj3qzggj7qd2kqx31i6b3igwk2hqjb8qzkyb37p86"; depends=[Biobase CGHbase CGHcall DNAcopy future future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; + QSutils = derive2 { name="QSutils"; version="1.6.0"; sha256="0b589rclng6b9wlcwshnggyy97wrbvcpdgxn926576plhlzdhkgh"; depends=[ape BiocGenerics Biostrings psych]; }; + QUBIC = derive2 { name="QUBIC"; version="1.16.0"; sha256="0xr0mvxca2fs3hmr573c9z8crk68nd59apncd6ppjhvhqh3ca7ax"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; + Qtlizer = derive2 { name="Qtlizer"; version="1.2.0"; sha256="0bc198dv2lrcs3w2jgmhrxwciq1fqqxs030jrwy54idf0635ilcr"; depends=[curl GenomicRanges httr stringi]; }; + QuartPAC = derive2 { name="QuartPAC"; version="1.20.0"; sha256="0awzg8bnw1z0hnaydjhxv4y5as9fs9yk0r99f9gkqqpk7ngqpfp3"; depends=[data_table GraphPAC iPAC SpacePAC]; }; + QuasR = derive2 { name="QuasR"; version="1.28.0"; sha256="0d87ajaaq8a7xgzl820qx5bvxw86ppab8clqk77sj02rfijnvjn8"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhisat2 Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; + QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.22.0"; sha256="0rim1l1lnz2lix1gxvwig52lfnrg9yz9hd7z61hq1mzibqg1l6sa"; depends=[dplyr Rcpp yaml]; }; + R3CPET = derive2 { name="R3CPET"; version="1.20.0"; sha256="1n1cqibv3194ixb72hp118x4kqvlfp59m27x36vxdyacvqyjcsk6"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; + R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.38.0"; sha256="0qvq18x5sc8p7zbwjpk8ps4yfbb3czbxc7kwapv7q331mmqkjl92"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; + R4RNA = derive2 { name="R4RNA"; version="1.16.0"; sha256="1f0wfyv6vjgvm2p3im5jgq7948wv5vk9kd1qc1zh3g1nnlfx4lxv"; depends=[Biostrings]; }; + RBGL = derive2 { name="RBGL"; version="1.64.0"; sha256="079599a6xn2i7snfn2vgshkw0c00rrfhj44pvi03ap8id29bkayy"; depends=[BH graph]; }; + RBM = derive2 { name="RBM"; version="1.20.0"; sha256="0cph07f1hbb7s2qjs7n2zh5ahw7vazkv4jgvbyzdkw0b82k8gb14"; depends=[limma marray]; }; + RBioinf = derive2 { name="RBioinf"; version="1.48.0"; sha256="03x025s3zvk2fm57wi1b0qwgf1x2nmlb3f63jkp04s4ndcplkbib"; depends=[graph]; }; + RCAS = derive2 { name="RCAS"; version="1.14.0"; sha256="0f812pgv3ys1zv4n9sqkgm01hj4cdd0i0h85dqbhkwd94zl6cavl"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; }; + RCASPAR = derive2 { name="RCASPAR"; version="1.34.0"; sha256="0ddy2zkp5xk4x12s0217y61im63aikb3ijy7c59karj64h8dl0nv"; depends=[]; }; + RCM = derive2 { name="RCM"; version="1.4.0"; sha256="0sq1wxr04igw13dn50ljczj6fbbisz4qkwf3dwpmbsk74pc2kfjw"; depends=[alabama edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries vegan VGAM]; }; + RCy3 = derive2 { name="RCy3"; version="2.8.0"; sha256="1rj8h6h17shnd94ra74l0ag549jbhcnc7s040g9faashh3w8pdjf"; depends=[BiocGenerics graph httr igraph R_utils RJSONIO XML]; }; + RCyjs = derive2 { name="RCyjs"; version="2.10.0"; sha256="0mimh459rzry2gfsgry7k8wzxfpn656b7l2abmhp9v7h7g6as5zg"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; + RDAVIDWebService = derive2 { name="RDAVIDWebService"; version="1.26.0"; sha256="1dmqszi1f5cwjphrcw98fib53c6n340avprfayd2jaxzkxlr7ylx"; depends=[Category ggplot2 GO_db GOstats graph RBGL rJava]; }; + RDRToolbox = derive2 { name="RDRToolbox"; version="1.38.0"; sha256="0vff12kknq0smrw34np9zn92s3vxkz13yqx1maaavpwpnhxi9d04"; depends=[MASS rgl]; }; + REBET = derive2 { name="REBET"; version="1.6.0"; sha256="0yqsymzl6mih7vhab45vnjqy8js7j65rfcz7417l0phbpcdjqny7"; depends=[ASSET]; }; + REDseq = derive2 { name="REDseq"; version="1.34.0"; sha256="1msl0bx3hz95m2gsqb6fmv76kxi2ab9kc7hdmfp4bnapi4wyzzp9"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; + REMP = derive2 { name="REMP"; version="1.12.0"; sha256="1j4iihakabykppbaf4qgg6p5x4nnwc244mqsf502f4kk8xk7lxrr"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; + RGMQL = derive2 { name="RGMQL"; version="1.8.0"; sha256="1sply0027nxsfv9bp274xph6m0532c1nn4wwxyhr2qm3m3pam9bx"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; + RGSEA = derive2 { name="RGSEA"; version="1.22.0"; sha256="0f3rrji5ky1y0d15izqhmdkr0w1niyr3qp5sq4hz4zprz6glcjg9"; depends=[BiocGenerics]; }; + RGalaxy = derive2 { name="RGalaxy"; version="1.32.0"; sha256="1vh7mjd1n30v5yx45j85bx5dzxr9mbbk6v4flysjppz1r2h3hfwm"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; }; + RGraph2js = derive2 { name="RGraph2js"; version="1.16.0"; sha256="13dypz9a2lz2ikv3zq4j3yik9f4iqqc373vg9ar59araciahh9b0"; depends=[digest graph rjson whisker]; }; + RITAN = derive2 { name="RITAN"; version="1.12.0"; sha256="1jndkr6gkpsf0q13hiyqc2j6nagzjsr9jvlk3i7662yisqavai7y"; depends=[BgeeDB dynamicTreeCut ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; + RIVER = derive2 { name="RIVER"; version="1.12.0"; sha256="0bqjzb4c249ib018j3apgv1ywlzrh36g4931vjnd7knjyqklxr6x"; depends=[Biobase ggplot2 glmnet pROC]; }; + RImmPort = derive2 { name="RImmPort"; version="1.16.0"; sha256="0zpb8csn0g3mrjhm4vyql5fhy8fxw805rzz6bcdwb0xvbd5a2z7i"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; + RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.12.0"; sha256="18z2bn8l5wp7pxa8pkbgg1g0z81c2yyx9x60djac616vnwqzc4bp"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + RLMM = derive2 { name="RLMM"; version="1.50.0"; sha256="0xzrj61x4bdh4q4hszg3zbyj8rnndb5i5h841vih58419yp86dbk"; depends=[MASS]; }; + RMassBank = derive2 { name="RMassBank"; version="2.16.0"; sha256="066hvm406r9jy0s5jv8a808k14dchfb3rr23r521mlqcy6f4s8rm"; depends=[Biobase digest enviPat httr MSnbase mzR rcdk Rcpp RCurl rjson S4Vectors XML yaml]; }; + RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.0.1"; sha256="1p8cl4wj1bs1089lwyz0lhlj17g2wypjj2cfq551vm1hvscmf5mf"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; + RNASeqPower = derive2 { name="RNASeqPower"; version="1.28.0"; sha256="14ir731p4ccbszkmlyf7ncbz2vm2nzqqgyflrqrdc2ik060gvzcr"; depends=[]; }; + RNASeqR = derive2 { name="RNASeqR"; version="1.6.0"; sha256="1pggfzy2ji0k6wyjm2sacdwk3ndbkjlvksisw02ic7hgim3hc3bw"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; }; + RNAdecay = derive2 { name="RNAdecay"; version="1.8.0"; sha256="06y0slqalgksp3kwmm0rw7mj99jw02w42nqfrwhv401kknxga8hn"; depends=[ggplot2 gplots nloptr scales TMB]; }; + RNAinteract = derive2 { name="RNAinteract"; version="1.36.0"; sha256="0nh9ll8f8wfwhbxyq1lj4y0v854wj55q2zg2bdrzg1bl89dakqa6"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; + RNAither = derive2 { name="RNAither"; version="2.36.0"; sha256="0lf1swy8f990bciss3y95ha22lkigb0gwdk884rsbkn20f6xn6p0"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; }; + RNAmodR = derive2 { name="RNAmodR"; version="1.2.2"; sha256="1yssncp2raf9mw6wlcsww792k2v93apqgl2sgpz7fj7n84vgl8sm"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; + RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.2.0"; sha256="16fnsvpfj1cq4sznna09ky8bm8j02sznqvknhq82il1d3b40ysmz"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.2.1"; sha256="19q4gh79kxz1hpa477rvishab1sgzp7kgw73ki6cisrz6hsvfjqn"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; + RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.2.0"; sha256="06lzarfip7477r080jc145pvvmrhqc5nh3jb4z8g1b7zf30ca0ir"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAprobR = derive2 { name="RNAprobR"; version="1.20.0"; sha256="03gjii1wijaabr69ph5aiz4dxkagdicd6nl5s54qzimrllymndaa"; depends=[BiocGenerics Biostrings GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr Rsamtools rtracklayer S4Vectors]; }; + RNAsense = derive2 { name="RNAsense"; version="1.2.0"; sha256="1lyv2hjvfjd7xkrjdmvz7qdwg3wrs2rp4w6qw3pabfzvwaycbim7"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; + ROC = derive2 { name="ROC"; version="1.64.0"; sha256="0gmx3r77yl5fqrj5j2hamwynbis75qd62q28964kx16z33xfgx89"; depends=[knitr]; }; + ROCpAI = derive2 { name="ROCpAI"; version="1.0.0"; sha256="0wa6lc4xpkvnzq8237452wkp5gd1m3da8jyadshnjs0q6fpvz4c4"; depends=[boot fission knitr SummarizedExperiment]; }; + ROSeq = derive2 { name="ROSeq"; version="1.0.0"; sha256="0yjyyzsk9vsqdc5p1p20rkcsrqwkynh8sxhrf7scjlwqgra989kl"; depends=[edgeR limma pbmcapply]; }; + ROTS = derive2 { name="ROTS"; version="1.16.0"; sha256="1mqhi1rfiw7mhiyify7vm3w17p7sc76wjda3ak6690hrc3gsm3cm"; depends=[Biobase Rcpp]; }; + ROntoTools = derive2 { name="ROntoTools"; version="2.16.0"; sha256="13pn4hkgzyfvyv5xf2s5am76bds2xrq23hab0v9k5hnr13q6wx1c"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; + RPA = derive2 { name="RPA"; version="1.44.0"; sha256="1gl7b1zxgab9q4afhpaqd78xjza5d4jr9n1h8ykshz9ipy3yvq60"; depends=[affy BiocGenerics phyloseq]; }; + RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.0.0"; sha256="0kfinf9vzc1i5qxmaw832id557gr1vqdi1m8yiaxz83g37wh8vps"; depends=[]; }; + RRHO = derive2 { name="RRHO"; version="1.28.0"; sha256="0bj3i6mpnj5zjm786pqy0aa57pq9n3bbzb88l1lcid9g71amyf8q"; depends=[VennDiagram]; }; + RSVSim = derive2 { name="RSVSim"; version="1.28.0"; sha256="1bi994994v0wfz3sx2l9x92b9p05djwpsyw6a5ppqw1yhgxhzf0i"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; + RSeqAn = derive2 { name="RSeqAn"; version="1.8.0"; sha256="0ay2lx892yrpv2cvvi68gk026pzjj516jk0j9g3iwd4ywa7ir5r9"; depends=[Rcpp]; }; + RTCA = derive2 { name="RTCA"; version="1.40.0"; sha256="18vsr0js4g4szfa05sk2b72zim8psyhk1h6nvcxzkdgzhzm3fyh9"; depends=[Biobase gtools RColorBrewer]; }; + RTCGA = derive2 { name="RTCGA"; version="1.18.0"; sha256="1jlmwb7b3gapx47kc0rgq11vzhm3g554pwv8mg6jfxcl1ypw9v57"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; + RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.18.0"; sha256="0idn65dbm12p1gnbgqfs0fk3q95y3171mmzfwwpxpdrkm4hywbqk"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr limma RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; + RTN = derive2 { name="RTN"; version="2.12.1"; sha256="139v6hyssdhkr5gmrlir41gwmy6da1wpi7csjvmv98qxg09h84zp"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; + RTNduals = derive2 { name="RTNduals"; version="1.12.1"; sha256="0491wsi6978990a0rzxjfrn9sk7nxizc2rbrpmw9g8502dbdc489"; depends=[RTN]; }; + RTNsurvival = derive2 { name="RTNsurvival"; version="1.12.1"; sha256="1cwsn33pdah3mfflarb1244g4s3vfqlhfhya47y2lanjksfjx753"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; + RTopper = derive2 { name="RTopper"; version="1.34.0"; sha256="0ia8h1xmz6flv0bvrzrskwzi7acx96mv95hxfyklpivndhfd7bkg"; depends=[Biobase limma multtest]; }; + RUVSeq = derive2 { name="RUVSeq"; version="1.22.0"; sha256="0yqs9xgyzw3cwb4l7zjl1cjgbsjp05qrqnwyvh7q81wdp7x5p55x"; depends=[Biobase EDASeq edgeR MASS]; }; + RUVcorr = derive2 { name="RUVcorr"; version="1.20.0"; sha256="01kdmvbvl8aip8xb4ld2jdv3139cfsa71a2s0p15rf87ipjj9hwl"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; + RUVnormalize = derive2 { name="RUVnormalize"; version="1.22.0"; sha256="0y28mmikqmz9fk1v7sb4fhkda20900cri60065ckz9jvnqzwjsam"; depends=[Biobase RUVnormalizeData]; }; + RVS = derive2 { name="RVS"; version="1.10.0"; sha256="00pynp8jrnzlq6c745ci84faab7cl7h8f6wx44x7v2hpfzqc9xzh"; depends=[GENLIB gRain kinship2 snpStats]; }; + RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.12.0"; sha256="0k8n73r8z3jrz5sskmiir7ijl3ya4radzny3z5amwqqlfc0k5995"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.8.0"; sha256="0m0whfpyml2i3p5pxsirvkr978jzmrw3wpg9w1r4fwybyrc2qpvf"; depends=[dnet igraph Matrix]; }; + RankProd = derive2 { name="RankProd"; version="3.14.0"; sha256="0yk6ysgkwxg5jlrbk99iandn4nwblbb34jjmb2nk1dkpvgkcg22f"; depends=[gmp Rmpfr]; }; + RareVariantVis = derive2 { name="RareVariantVis"; version="2.16.0"; sha256="036gk75whf60jz19vsppx045yz9w4mxd3y4b5a9zp8ylrd9z9if3"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + Rariant = derive2 { name="Rariant"; version="1.24.0"; sha256="16ddyq78idrfxkiy4wsgv76hlp6skfvm3vssj0p0il6sil48yqff"; depends=[BiocGenerics dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; }; + RbcBook1 = derive2 { name="RbcBook1"; version="1.56.0"; sha256="0safnjrwf130hx4n8ak6c4ynqvgjdn1a5s6nbl130d78nramvwyn"; depends=[Biobase graph rpart]; }; + Rbowtie = derive2 { name="Rbowtie"; version="1.28.1"; sha256="0589ggbfx6di42wvqyhnzgrhmb52swr3r5z22w6b8x0z2y7hl8b3"; depends=[]; }; + Rbowtie2 = derive2 { name="Rbowtie2"; version="1.10.1"; sha256="19v7wfvrd53j618c1xbiqnlsf2kxw697myryx0vb9s2aspknyzz7"; depends=[]; }; + Rcade = derive2 { name="Rcade"; version="1.30.0"; sha256="1a6cp1cglm52nmyv3bzcx6bsh3sbzy2v7zmrx7p8hkpkzlkdj4i4"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; + RchyOptimyx = derive2 { name="RchyOptimyx"; version="2.28.0"; sha256="0bfy5l146whsafdp58gwgqs0pkmlnfqnlr60rr6a05swh32v0zk5"; depends=[flowType graph Rgraphviz sfsmisc]; }; + RcisTarget = derive2 { name="RcisTarget"; version="1.8.0"; sha256="1lvi873dv0vhw53s1pmcilw8qwlywm9p2ybphcl168nzh6w31r4i"; depends=[AUCell BiocGenerics data_table feather GSEABase R_utils SummarizedExperiment]; }; + Rcpi = derive2 { name="Rcpi"; version="1.24.0"; sha256="02677hw1a3f9iyaq23q5abh5vvd981ppk5wp3x2dqh700808hw0h"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; + Rcwl = derive2 { name="Rcwl"; version="1.4.8"; sha256="0lkcs95x3mrh5snzdlqbbkf96d96h270w39nzh8vn8m3ca4pj4pi"; depends=[batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; + RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.4.5"; sha256="0pqa462iaiih2zxxfa51fm320yjjyj89d0h6xsihbxrwrsicwrcm"; depends=[BiocFileCache rappdirs Rcwl]; }; + Rdisop = derive2 { name="Rdisop"; version="1.48.0"; sha256="1danfv8v16mn1phha8wb5ip7gdv7mxyvzkbaylx5xj9qhdzm9rnj"; depends=[Rcpp]; }; + ReQON = derive2 { name="ReQON"; version="1.34.0"; sha256="06m0hd4aqsxjyzhs8b1zys7lz8289qgwn7jp2dpln1j7cf02q4bz"; depends=[rJava Rsamtools seqbias]; }; + ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.2.2"; sha256="00w5vzxjs27wxm1j3qb5l41sn8cf6d0mzc1bwacq0xwj191mvly9"; depends=[ggplot2 gplots httr jsonlite progress RColorBrewer]; }; + ReactomePA = derive2 { name="ReactomePA"; version="1.32.0"; sha256="1ngilyn1mihwxs4sh5gk9y829xghdmh277cfw3vfgflz9sgwy21x"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; }; + ReadqPCR = derive2 { name="ReadqPCR"; version="1.34.0"; sha256="1z97qb1vlwddbzpq4g9n986g46qk39mk69hhxwfqw3xdgnqqbj92"; depends=[Biobase]; }; + RedeR = derive2 { name="RedeR"; version="1.36.0"; sha256="15f1qb5k9x7agjjjrinc4i237ag4vjv1875a1kqakwlg1jvw5izg"; depends=[igraph]; }; + RefNet = derive2 { name="RefNet"; version="1.24.0"; sha256="0hqz0fpbcikf65jb5vzcf74mg8ifsmvb48irmcqci48hlphmppcl"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; }; + RefPlus = derive2 { name="RefPlus"; version="1.58.0"; sha256="1gqcc2kzwj6kq7s0jggncic2a7q9gbzpayv569sqrdm6gv5qml8n"; depends=[affy affyPLM Biobase preprocessCore]; }; + RepViz = derive2 { name="RepViz"; version="1.4.0"; sha256="1aj58cbbidp4bzh41sg0g2kdnfszzj67x1z14i5ckmp5f27l8mdc"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; + Repitools = derive2 { name="Repitools"; version="1.34.0"; sha256="11nmcm26nfvl2hfh1ly6mzzqrvhkwsnfnkd0c1nf3wxyapvsp025"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; + ReportingTools = derive2 { name="ReportingTools"; version="2.28.0"; sha256="1ig1h224silbdbdr0j9j9sysp9l9dzpcsjzn8jp57h3gh4pdqbfx"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; + Rgin = derive2 { name="Rgin"; version="1.8.0"; sha256="179w3bk8jhr8ykv1hmkipwivv56ahb0m9f6vdvvqqjfi766mc3hl"; depends=[RcppEigen]; }; + Rgraphviz = derive2 { name="Rgraphviz"; version="2.32.0"; sha256="1calpvzgcz6v7s4x6bf35kj83sga95zjp7x87p5d3qnbv7q2wz5y"; depends=[graph]; }; + Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.10.1"; sha256="0f45sqrvzj6x4mckalyp8366hm8v0rrmzklx3xd4gs6l2wallcn9"; depends=[]; }; + Rhisat2 = derive2 { name="Rhisat2"; version="1.4.0"; sha256="0hhmcdnixkaqx9x9cl2vjaba3ri8m6wkbnbhxjmy51jwqzy2223a"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; + Rhtslib = derive2 { name="Rhtslib"; version="1.20.0"; sha256="186r7icrkzrni1c4n33ip7dlsfgys7hnqf0simvxrpl3yhh3ygdi"; depends=[zlibbioc]; }; + RiboProfiling = derive2 { name="RiboProfiling"; version="1.18.0"; sha256="0s30m96dbbrzbywz3wai5ar0nsshb16lq101nyl20w1bk7sk2bha"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; + Ringo = derive2 { name="Ringo"; version="1.52.0"; sha256="10zd73vfahcvpxizks7n118wli68bclcls5r926y28qcgbv41gy9"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; + Risa = derive2 { name="Risa"; version="1.30.0"; sha256="156gcxcc09iny0nfa73c5j05fhay4dmjw10hk7nnywigckc05zgx"; depends=[affy Biobase biocViews Rcpp xcms]; }; + Rmagpie = derive2 { name="Rmagpie"; version="1.44.0"; sha256="1j6qbk9hgg2pp3f11mwzvrymljrn2bx2cwh74z6cq6yyavwb7ywq"; depends=[Biobase e1071 kernlab pamr]; }; + RmiR = derive2 { name="RmiR"; version="1.44.0"; sha256="115qfmab0czrq65zaa0y0wqf1sxvsdsx8p9k8nkmvbzcg96dy56k"; depends=[DBI RmiR_Hs_miRNA RSVGTipsDevice]; }; + Rmmquant = derive2 { name="Rmmquant"; version="1.6.0"; sha256="11k2k6l42xybj5svrisv3kjasp5f6z6qjkg5lpg2irm2ikxw6sv2"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + RnBeads = derive2 { name="RnBeads"; version="2.6.0"; sha256="11li6qdxnnvc4rjfkhrb1r3bizyn087ra8wp37y3xkvf78ziyzsw"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; + Rnits = derive2 { name="Rnits"; version="1.22.0"; sha256="01g6z0v8iqzi12xgqmnr0hkb8q6bwf8kwrv8yv9nj7964hlvvgdl"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; + Roleswitch = derive2 { name="Roleswitch"; version="1.25.0"; sha256="1ni9av19xrf1qhrzqnx55ayy26g062y9ipjxgb9k3gc9dbgja0sj"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; }; + RpsiXML = derive2 { name="RpsiXML"; version="2.30.0"; sha256="15i7s6vdx2c9q9p9dv9mbyp238v4j7lh138v7n0pnmk20d9m0cl3"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; + Rqc = derive2 { name="Rqc"; version="1.22.0"; sha256="1qsm9r6xfsplk8zpf7p0k7fi86l8a74nx963sna8gzig5qgrvnm3"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; + Rsamtools = derive2 { name="Rsamtools"; version="2.4.0"; sha256="0z01z0s71f941k7sns46nyabps28c69d6jxx6sppjpc6h4vrw0vq"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; + Rsubread = derive2 { name="Rsubread"; version="2.2.6"; sha256="04h79qhq93d8id0rr5xnj9vf82ygwxzdlnck78yv738xd0jjvnpm"; depends=[Matrix]; }; + Rtreemix = derive2 { name="Rtreemix"; version="1.50.0"; sha256="11vxwsx9nv8hkj747yk27ln6a06idf1x78dzfijyqs85gcvdsjaw"; depends=[Biobase graph Hmisc]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.26.1"; sha256="1ddr3ngyczx332zw9ai1a6h7442lgrbfcj8vrhvbkdkzqwj14xmb"; depends=[BiocGenerics]; }; + SAGx = derive2 { name="SAGx"; version="1.62.0"; sha256="0ar2chczdzzadib0mz3fyk8g2anqsi6jsxh61r2x74r8gwy0w6q0"; depends=[Biobase multtest]; }; + SAIGEgds = derive2 { name="SAIGEgds"; version="1.2.1"; sha256="0zb6lsdbhc2zm5ipj4r51q96w7pgh3s054jmljqc1xgq3ygy4a5m"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; + SBGNview = derive2 { name="SBGNview"; version="1.2.0"; sha256="05391s9alhxdjx4zdqsx03jnsm0agnm1cky18mwlmbrv0i0bm0js"; depends=[AnnotationDbi igraph knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; + SBMLR = derive2 { name="SBMLR"; version="1.84.0"; sha256="07k2a259pdynh0lchzcmdkj85f0054h6ad7h5rnxjv21fqscqfqj"; depends=[deSolve XML]; }; + SC3 = derive2 { name="SC3"; version="1.16.0"; sha256="15x7q8c13r4b6shrn0j88hw5vbrj7vrinihg5ihgd3l5g1x8x499"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; + SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.30.0"; sha256="1kdy0g71wrl05fgb2s1l1xnl8wfsavrjzqn9bdxxm64axbzhzl8p"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; + SCANVIS = derive2 { name="SCANVIS"; version="1.2.0"; sha256="1qqac770x0csiv5vl61rrcdnqa8xrzqzy04yafnygk1c73aa7and"; depends=[IRanges plotrix RCurl rtracklayer]; }; + SCBN = derive2 { name="SCBN"; version="1.6.0"; sha256="0k4bxlfv2adj0mrhrfgjpdg3zswxq646298wm04d4lm6w2fwfypj"; depends=[]; }; + SCOPE = derive2 { name="SCOPE"; version="1.0.0"; sha256="0ha8ghx0fkj9c01n95fm2s6df5yisxdi6bf40l53cl8ai0aiv140"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; + SCnorm = derive2 { name="SCnorm"; version="1.10.0"; sha256="1hc503wimicp64r8c833sk49bhmxarbwng6rkcvmhj97hssf7v66"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SDAMS = derive2 { name="SDAMS"; version="1.8.0"; sha256="0xmfk8xm2xsgkk732dq4mpysjsxkm2m533g1kp25jkpvlx41rs92"; depends=[qvalue SummarizedExperiment trust]; }; + SELEX = derive2 { name="SELEX"; version="1.20.0"; sha256="0jzxmj2y653igfksxvrr2z22amlddqw3wimfgq86ydfpjzj1g0n4"; depends=[Biostrings rJava]; }; + SEPIRA = derive2 { name="SEPIRA"; version="1.8.0"; sha256="0zvhw3w04xm523ancvv3rsh2ijnjkkxw632619yab8lsvff0lf6b"; depends=[corpcor limma]; }; + SEtools = derive2 { name="SEtools"; version="1.2.0"; sha256="1l0qz4a09vz247di8p2wjf4l2vd0f0aq8prp03m6lgawbpcy3qzm"; depends=[BiocParallel circlize ComplexHeatmap data_table edgeR openxlsx pheatmap randomcoloR S4Vectors seriation SummarizedExperiment]; }; + SGSeq = derive2 { name="SGSeq"; version="1.22.0"; sha256="11rxx7abjyga2sdcp4x4z3n8xjx6973sckyzmh9ax6r46kwhxq8c"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; + SIAMCAT = derive2 { name="SIAMCAT"; version="1.8.1"; sha256="106kaszn9svbzwwly5z7af8cmvhmwq1jw2w0vzdassmjpx06s2h9"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo LiblineaR matrixStats mlr ParamHelpers phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; + SICtools = derive2 { name="SICtools"; version="1.18.0"; sha256="1ykgx9f274jryvpy4jf9v6q1zn5amzh7rx6rpkiswnhvapryanpr"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; + SIM = derive2 { name="SIM"; version="1.58.0"; sha256="018f748a99s9arqp6zgqhqm2k1p1yz8nvqjp9m037vhcc7056sas"; depends=[globaltest quantreg quantsmooth]; }; + SIMAT = derive2 { name="SIMAT"; version="1.20.0"; sha256="1xgi7923yd11hjbv73vwixzbqq8206i79jkpxza0dl8wdm5v1ncy"; depends=[ggplot2 mzR Rcpp reshape2]; }; + SIMD = derive2 { name="SIMD"; version="1.6.0"; sha256="1jg215bd0j4z0npq5yj52pmblbr8iwa3lwp6h2rs9jjaapc0a7nc"; depends=[edgeR methylMnM statmod]; }; + SIMLR = derive2 { name="SIMLR"; version="1.14.0"; sha256="0kwvbs45qhx4mkrshxjgqms0g3qz08zrv9mlhwcmqxrzhh79b9gr"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; + SISPA = derive2 { name="SISPA"; version="1.18.0"; sha256="0c51c2vc6imcbszg37yjl4imvmn4sdy2wg6lvf143sqmsfk0mr2q"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; + SLGI = derive2 { name="SLGI"; version="1.48.0"; sha256="0imji4jhhhkx83s29cbmp2gdn5223236h2z6ji23v6f79h3iklww"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; }; + SLqPCR = derive2 { name="SLqPCR"; version="1.54.0"; sha256="0g1fjjilz3zfwaglq2mx7xgn0lznmd6kx6f2clwnyy08qs00k68j"; depends=[]; }; + SMAD = derive2 { name="SMAD"; version="1.4.0"; sha256="1j4gxkjhd0prs1wskq6npf0zk3i03l45zfaxdmzah0wqkzkw5pxk"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; + SMAP = derive2 { name="SMAP"; version="1.52.0"; sha256="1yhywmf6jlknpfzbwr6yv6lwbrq5j8q4pa2jbyfzlx1pv2a98y2q"; depends=[]; }; + SMITE = derive2 { name="SMITE"; version="1.16.0"; sha256="1k6qp7p83i4ibap0dv1vm0xwg2q89j22jp5av2k4az0nril00149"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; + SNAGEE = derive2 { name="SNAGEE"; version="1.28.0"; sha256="15a41lz8gvwx8dz44g833a2b15n5q20klnp2lq55avrkrd8kpl8g"; depends=[SNAGEEdata]; }; + SNPRelate = derive2 { name="SNPRelate"; version="1.22.0"; sha256="14hy5z76xzpddi24vxbqi52522w1jbailm2arsshzwj2fwxmwnr3"; depends=[gdsfmt]; }; + SNPediaR = derive2 { name="SNPediaR"; version="1.14.0"; sha256="0qx0fjxdyvrq8gkljmrpja53gsnhqj613v0sdnqdv1zmd7nxff8d"; depends=[jsonlite RCurl]; }; + SNPhood = derive2 { name="SNPhood"; version="1.18.0"; sha256="17zwvs60r21zra93cc68g9fx483k15iyzhhczga0srp5yw3qs54k"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + SPEM = derive2 { name="SPEM"; version="1.28.0"; sha256="0mq7askcm5902p22r8qbppmb8nmhhr36va24bhkdp4dbxfw6y5mb"; depends=[Biobase Rsolnp]; }; + SPIA = derive2 { name="SPIA"; version="2.40.0"; sha256="0k5k3c5g6g43xy9q8h3fbv7xkvjx15pabps49acqjz0jcak5xpsm"; depends=[KEGGgraph]; }; + SPLINTER = derive2 { name="SPLINTER"; version="1.14.0"; sha256="04qr648rg0qs7y60qvaia8ca28clmhx0w39mgyxvyyxs0f9nqyfn"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; + SPONGE = derive2 { name="SPONGE"; version="1.10.0"; sha256="1cvr8ci1if2f0w72yhdn76nshbv85x9wd3dm5cq2vy2p7x27xlib"; depends=[Biobase data_table doRNG expm foreach glmnet gRbase igraph iterators logging MASS ppcor]; }; + SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.2.0"; sha256="1nn4dx0957dmng5wcx2wqzzrfwp3vk3q9iz8pr4ad495mc876b4f"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; + SQUADD = derive2 { name="SQUADD"; version="1.38.0"; sha256="1ki5grqn0f9krcm0wnwpfywca23c4ib1bh08mvp5ax3rg18rd0gl"; depends=[RColorBrewer]; }; + SRAdb = derive2 { name="SRAdb"; version="1.50.0"; sha256="03bhfxhw4rk4fl4i06wqv5s5s2iarm80mypjzi51blhqz1d1i414"; depends=[GEOquery graph RCurl RSQLite]; }; + SRGnet = derive2 { name="SRGnet"; version="1.14.0"; sha256="1z0f9dvlagi795rf4s25siqwldiqkxsrmks5006i4fz0xlgxlbm0"; depends=[DMwR EBcoexpress gbm Hmisc igraph limma MASS matrixStats pvclust]; }; + SSPA = derive2 { name="SSPA"; version="2.28.0"; sha256="1md98lz3aaigf56sa8sc958kh60v9j0byj4vsqmlcxghs9wgj2bs"; depends=[lattice limma qvalue]; }; + STAN = derive2 { name="STAN"; version="2.16.0"; sha256="1qhdysp56rx285ydzrl8z5a6nw632w0nzj01x62pjzij1a4p8jh0"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; + STATegRa = derive2 { name="STATegRa"; version="1.24.0"; sha256="1yvnmd3gc76nc03mfnzkqsvy2i6yh3cg966ffz3mdjpaf6442122"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; + STRINGdb = derive2 { name="STRINGdb"; version="2.0.2"; sha256="0mzhhskb51dli7lk9v8s9isqdrv5f7g8pbyrk7mi1lsdymfya8v5"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; + STROMA4 = derive2 { name="STROMA4"; version="1.12.0"; sha256="1prsly8i5hjcp8i1xd6nnk8ia6l88bchwqhg9bxma281zn8d94af"; depends=[Biobase BiocParallel cluster matrixStats]; }; + SVAPLSseq = derive2 { name="SVAPLSseq"; version="1.13.0"; sha256="07nx309h9ikw78kyhiwh44mdkdch8irr29mwpyksswl69bn8hwx1"; depends=[edgeR ggplot2 limma lmtest pls SummarizedExperiment]; }; + SWATH2stats = derive2 { name="SWATH2stats"; version="1.18.0"; sha256="0ls15k3rki3al200ksxn646vxfcxxy26pdararw142pwwgizd6qy"; depends=[biomaRt data_table ggplot2 reshape2]; }; + SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.42.0"; sha256="07g7k0ji0n3sshnl9ff8619h91mbf0qbq2ld003ywkj98ws8l0va"; depends=[]; }; + ScISI = derive2 { name="ScISI"; version="1.60.0"; sha256="03klrnw1czpijql4ia3zi6l5286r6cl3kywk5rbr8x7dakvra1j0"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; }; + Scale4C = derive2 { name="Scale4C"; version="1.10.0"; sha256="0xhr44wbmhwvczjplby2848vk39k2a9g289kkxj6nrz46z8114fv"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; + Sconify = derive2 { name="Sconify"; version="1.8.0"; sha256="0p9qjhxqkq2p96jbrj9szm46srnj6qgzhlpmyb3a9vz99bvh55yv"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; + SemDist = derive2 { name="SemDist"; version="1.22.0"; sha256="0rqigj4q86zi0qw1296vs5l8m706iik1898ynsfxi61kmb0s9kyp"; depends=[annotate AnnotationDbi GO_db]; }; + SeqArray = derive2 { name="SeqArray"; version="1.28.1"; sha256="006kvqpas7shpp4bal3wgkrb4vif7mc4hkdyhslykjmw57pq903f"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SeqGSEA = derive2 { name="SeqGSEA"; version="1.28.0"; sha256="1i7bsyaqppfgzvz0iwknmxxwhrlzx3z55rhmrvg4h9lfclxq6fwd"; depends=[Biobase biomaRt DESeq doParallel]; }; + SeqSQC = derive2 { name="SeqSQC"; version="1.10.0"; sha256="19ika6hgz2lj322kxyn96k9ldaw912gz07p900bj7h1imqj2737f"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; + SeqVarTools = derive2 { name="SeqVarTools"; version="1.26.0"; sha256="1i8awd1lav7hxzwim2c783br36d5rl5ib7y1j7rrb5lbr811azmz"; depends=[Biobase dplyr gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix rlang S4Vectors SeqArray tidyr]; }; + SharedObject = derive2 { name="SharedObject"; version="1.2.2"; sha256="1wlxj8a10q6ldaigzvsch30k96zlyip06f8dq92wi1g75pw3b0yg"; depends=[BH BiocGenerics Rcpp]; }; + ShortRead = derive2 { name="ShortRead"; version="1.46.0"; sha256="0l4kdln69y6yhln0xiv2jmpxg05fjcglln406p43a2bqvk2lr03d"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; }; + SigCheck = derive2 { name="SigCheck"; version="2.20.0"; sha256="1x4waf5h0ya279xrb6zbwaln9rdqr344zg6lgy0rkm99ily54pij"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; + SigFuge = derive2 { name="SigFuge"; version="1.26.0"; sha256="0y3392vyavx3hpzdg3i3qp1hrnkn1yklzff491swwlfgqjdd67q0"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; + SigsPack = derive2 { name="SigsPack"; version="1.2.0"; sha256="1asng4bnjc2nhd1wyq8r6kq1h1g5s312n0xpgymn2gj6h2iipaz3"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; + SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.26.0"; sha256="04ab0vnk2xri9f1ih21cdbnwmhldwv9pix70876s3cy3sc95y97r"; depends=[Biobase limma mclust Ringo]; }; + SimFFPE = derive2 { name="SimFFPE"; version="1.0.0"; sha256="1g9705g3iv451r7j071n7k49cm4dz2dr9073nl90qz7v4vrcld24"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; + SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.10.1"; sha256="092wvk11n7pa234vlwhxm3gdi4k3sbnz1splhxalbdhz3jf02zfp"; depends=[BiocGenerics S4Vectors SummarizedExperiment]; }; + SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.0.0"; sha256="1xir7a9y93yx73ckw0y0x2qiq02pkm3w058c1fl0lnv9azx8sab7"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran SIMLR stringr]; }; + SingleR = derive2 { name="SingleR"; version="1.2.4"; sha256="1al2b8i6f56248n0vdd4xzwqimqha8fhcrrj6pknp3dbs0gd27rp"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats ExperimentHub Matrix Rcpp S4Vectors SummarizedExperiment]; }; + SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.24.0"; sha256="0d34mss73w1jdnmilk060a1fywlfmqbnlir089q9m3q1p3x0j4c1"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; + SpacePAC = derive2 { name="SpacePAC"; version="1.26.0"; sha256="1wryq99kmjig90zjlj5ys87rbwqclsvzk2rz4rwb07qil6hbkvsk"; depends=[iPAC]; }; + Spaniel = derive2 { name="Spaniel"; version="1.2.0"; sha256="0gwp5ilsyzpn8sms0zajplab3bsj429r0dhdmi1bd8rfrlbs2005"; depends=[dplyr ggplot2 jpeg magrittr S4Vectors scater Seurat shiny SingleCellExperiment SummarizedExperiment]; }; + SparseSignatures = derive2 { name="SparseSignatures"; version="1.8.0"; sha256="0nls5vwww7wkg555xfzp9srmj8fic7fk46zk5w166519xjx92yvj"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls]; }; + SpatialCPie = derive2 { name="SpatialCPie"; version="1.4.0"; sha256="1sdnc8f7x6n5k5i7qgfv7gh0y5s27gy3zh94ffwwic947xzw1b7k"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; + SpeCond = derive2 { name="SpeCond"; version="1.42.0"; sha256="0vr4assa8i8dnsfsvwqi0dg57qxi1yg3sjiqxs109ybcfg3y5rlj"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; + SpectralTAD = derive2 { name="SpectralTAD"; version="1.4.0"; sha256="0ncqmfzip0bggxsrsbgfkh39d59d9pv031rg11r2spknd9hyn3mn"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; + SpidermiR = derive2 { name="SpidermiR"; version="1.18.1"; sha256="0y32rmq8c68rlvkm9bxkw6ifzqgivd56ikzm3mz3xfrq2xgb9pzq"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra MAGeCKFlute miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; }; + SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.28.0"; sha256="1a19dr126cs3lr0bjnwnnz2qjxyl0dmw1xm15p14w4lgvmndg5az"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; + StarBioTrek = derive2 { name="StarBioTrek"; version="1.14.0"; sha256="010a9fmlwknrig642g12lk3r583rynsq2kwpj7an2ax1ndc8my87"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; + Starr = derive2 { name="Starr"; version="1.43.0"; sha256="1cbbgdz92ja25fvn3v0cq83lb9h2dgpw7c03galjxprnkkgngmb5"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; }; + Streamer = derive2 { name="Streamer"; version="1.34.0"; sha256="10z61k9v3l5zwb1nkxwr7920ykpmimrvzkykfqpyk2hzapd9dxn5"; depends=[BiocGenerics graph RBGL]; }; + Structstrings = derive2 { name="Structstrings"; version="1.4.1"; sha256="0q90qvwg6wsmzz2n9wfqixmh6r24vyxbnkfpb98ghrgfhib9rq57"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; + StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.4.0"; sha256="1qkr6mxqyknf0sgn7k7laqmwgf27g81d80k7qikxiln8fimwj8xa"; depends=[assertthat BiocGenerics Biostrings dplyr GenomicRanges rlang rtracklayer stringr VariantAnnotation]; }; + SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.4.0"; sha256="1x370a1n5gzlz2cwf4f8ghzcpa4nc17h79vp04s8c96gwxqcjpzn"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; + SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.6.0"; sha256="11lbqmqx0bdw0lskh49nqaxgvzlaj0gs972ym1ahmnylqg1jxn0s"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; + SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.18.2"; sha256="1raw5ycigr6gjgzn3kx3jls5hzww10fhnwd8c17c20hmhirf13rw"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix S4Vectors]; }; + Sushi = derive2 { name="Sushi"; version="1.26.0"; sha256="17j3d5qjq5nbv99by5mq8rwr0jgh2jyyfn2nwxmwgzlmk3lgi1rb"; depends=[biomaRt zoo]; }; + SwathXtend = derive2 { name="SwathXtend"; version="2.10.0"; sha256="1jmcf50gplw3wzvkl5kvvfrl5m753cxkxpg72bri4i6p6myqm83i"; depends=[e1071 lattice openxlsx VennDiagram]; }; + SwimR = derive2 { name="SwimR"; version="1.26.0"; sha256="0q9i886yy5q7gxq382j9gykj5c5kpkck1lz54la6py6qyb800p4a"; depends=[gplots heatmap_plus R2HTML signal]; }; + SynExtend = derive2 { name="SynExtend"; version="1.0.0"; sha256="0ypca32z57flwmmxghmyy1pg1y5x24kkbg9ka82fdmgv943llrd4"; depends=[Biostrings DECIPHER igraph IRanges S4Vectors]; }; + SynMut = derive2 { name="SynMut"; version="1.4.0"; sha256="1pldzvzlxm77c7zdzfvvi6zdy24j4qzf0c22l136yarmd369zl4k"; depends=[BiocGenerics Biostrings seqinr stringr]; }; + TAPseq = derive2 { name="TAPseq"; version="1.0.0"; sha256="1az32hk1l9n6j1ak70npfji8xkwjyggca8najq6hm9z22n1mj90n"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; + TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.0.0"; sha256="1gcn1876qm9fzra1hiqg47vxlpqqh79mg6n61f5f3ik3qsarxyy5"; depends=[ASSIGN BiocParallel bioDist boot caret circlize ComplexHeatmap DESeq2 DT e1071 edgeR gdata ggfortify ggplot2 glmnet GSVA RColorBrewer readr reshape2 ROCit S4Vectors shiny singscore SummarizedExperiment]; }; + TCC = derive2 { name="TCC"; version="1.28.0"; sha256="0ah46f6h4y9l737a4jgd3y6af1nz693fl9pm3nxkgdakf0v46bly"; depends=[baySeq DESeq DESeq2 edgeR ROC]; }; + TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.16.3"; sha256="06d15k7khlwia0z1j6zhsbkvdfyqpc6sqdlig5alajcb76p2a8kx"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment tibble tidyr XML xml2]; }; + TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.14.0"; sha256="1jjq7jcf0978mik9k25y4rqyljwlcy2wypmz607vkyxl58q6kql1"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; + TCGAutils = derive2 { name="TCGAutils"; version="1.8.0"; sha256="0mggkcp3pr53315k4938wncbh04bn75j1x50h8b87py0hg88d6n8"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; + TCseq = derive2 { name="TCseq"; version="1.12.0"; sha256="1s0grvs1a5x857jw4r9x6ymg2bm987nrhnfxcz2p512pwn79s62j"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; + TDARACNE = derive2 { name="TDARACNE"; version="1.38.0"; sha256="1k59i57nq2k8a5ih8i8ikyim9i4nr41s74anggbgwnpypdxbvrdy"; depends=[Biobase GenKern Rgraphviz]; }; + TEQC = derive2 { name="TEQC"; version="4.10.0"; sha256="1bb2yar0qjlpr5zw5ld4pmvgn3ni3fz6n01q7j8a8zs9ql8jiqjk"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; + TFARM = derive2 { name="TFARM"; version="1.10.0"; sha256="0w7rs22wga1xjyqfg500lcfd0yaajgck7jkpp510daksw9f0xw9r"; depends=[arules fields GenomicRanges gplots stringr]; }; + TFBSTools = derive2 { name="TFBSTools"; version="1.26.0"; sha256="0xa9f8acw5f4xfkfz0b8g0k4y892an7csfhf0cniqp6dr7255zsz"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; + TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.8.0"; sha256="06xs43nppvwwp55z81zp7fd0bnq06rghmacblf8h6bkcpvb69n8v"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; + TFHAZ = derive2 { name="TFHAZ"; version="1.10.0"; sha256="12r8g4kd6rh1yir30bx53ccpf0x63s6s1il64gigwi2yswqk6a88"; depends=[GenomicRanges IRanges S4Vectors]; }; + TFutils = derive2 { name="TFutils"; version="1.8.0"; sha256="0mri86dwxbihmnkrr8jfnf02bvg8kd99b1vx62wgp1vmajkzlpbc"; depends=[dplyr GSEABase magrittr miniUI Rsamtools shiny]; }; + TIN = derive2 { name="TIN"; version="1.20.0"; sha256="1vcqz6gw25kfw79dkr7gxblf8prdk57sq9yib5pk6wsz75cmgf10"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; + TMixClust = derive2 { name="TMixClust"; version="1.10.0"; sha256="0lzzfwcl0zvhjyzjq88n8fr90spw6b35slbmgxmca0lc3py12gwi"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; + TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.4.0"; sha256="114w957i392yls73w33qcmw2ynyfc415y8gdvqh6p3k6kyiv7c90"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; + TOAST = derive2 { name="TOAST"; version="1.2.0"; sha256="1q7xan3qwmxjr0l8mlxi97khnp5h22r2q84vgca4wl9s9j5rz7vl"; depends=[EpiDISH limma nnls RefFreeEWAS SummarizedExperiment]; }; + TPP = derive2 { name="TPP"; version="3.16.2"; sha256="032yvln001808fxjkmwi98dl98h2700dxv0rsa7pg3whj4fj61kq"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; + TPP2D = derive2 { name="TPP2D"; version="1.4.1"; sha256="0r790nr2x5blnphsvb4xmjq6n9ivrrdihaxxpp2f9hg14rdi1l47"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; + TRONCO = derive2 { name="TRONCO"; version="2.20.1"; sha256="0nq2nmb69wabblal845llyx89fqna1rk2kjj0aw0scm0gydrs232"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; + TSCAN = derive2 { name="TSCAN"; version="1.26.0"; sha256="0hvrnva8lanr97p34i6irx8i6gskdk9jsa1mj6jhh7jlb0khv7d9"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; }; + TSRchitect = derive2 { name="TSRchitect"; version="1.14.0"; sha256="06vkd7k8kvmgh5ry1ky7h2f5dn3d2dahn8hb0n70hlnwrfa6ds7w"; depends=[AnnotationHub BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges readxl Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + TTMap = derive2 { name="TTMap"; version="1.10.0"; sha256="10b1r9pmdqsxfxblyd0mqg6ny109pmw1jvwss3a9szdx5v2ml6n6"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; + TVTB = derive2 { name="TVTB"; version="1.14.0"; sha256="0kpl9x5i3fmarsgvy2zwnjc8ng2w63vyqzggxwlqirk0h0psk1l1"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; + TarSeqQC = derive2 { name="TarSeqQC"; version="1.18.0"; sha256="13p5qx0zsl47xwckxfzxkdx4vvdn8nz8r8xryrnx83xfh8ydkbw3"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; + TargetScore = derive2 { name="TargetScore"; version="1.26.0"; sha256="110ym72whwsjvzwn1byash37k6ihnwwlwnkdcbg2k6jnb3ml33nv"; depends=[Matrix pracma]; }; + TargetSearch = derive2 { name="TargetSearch"; version="1.44.0"; sha256="0nlq91ksabcalvmpw7y1ycp00bs06mvhcymxx43dkq94w4idrv2c"; depends=[assertthat ncdf4 stringr]; }; + TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.6.0"; sha256="1k0djvcsyjj1ayncvmi8nlqi3jdn5qp41y3fwsqg1cp0qsvx7zv3"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; }; + TissueEnrich = derive2 { name="TissueEnrich"; version="1.8.0"; sha256="177j98r30zp9pghymi92zkkq06ijm0nz57l5b8kdq9h633w6dlvx"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; + TitanCNA = derive2 { name="TitanCNA"; version="1.26.0"; sha256="1q1c3w4kvbrp4arwvhvanddd1l552jl9lrmgicjsccqlqvdgafxi"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; + TnT = derive2 { name="TnT"; version="1.10.0"; sha256="1p6x2ly3xqdzwh0ml9y03vrb80lwpzv1vbvlfsg0563cy1qm1hil"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; + ToPASeq = derive2 { name="ToPASeq"; version="1.22.0"; sha256="04bd54xy2qhccbj8mpa3c7lgzf54q2lxprh9zxv5jirplkmklkf0"; depends=[Biobase corpcor graph graphite gRbase limma RBGL Rcpp SummarizedExperiment]; }; + TransView = derive2 { name="TransView"; version="1.32.0"; sha256="1bcyz9hk4vqlv6nv70m146fs3ha2x89vpli56g3n7rz718q79yj2"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; + TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.0.0"; sha256="0g7fd5l0r4sqc35cfw4dx7sskb89ikyr7xkmc8qx7y3hj57kidpp"; depends=[ape igraph RedeR]; }; + TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="1.4.6"; sha256="1708kgbfddy3dy4q1i9h2zxrdqv6xaj171940vn6h6d59kxsvf6m"; depends=[ape BiocGenerics dplyr rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; + Trendy = derive2 { name="Trendy"; version="1.10.0"; sha256="0snsipp212s4f646pk5r7hychbkf4xjyfng8pmawss9h1qsig32f"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; + TurboNorm = derive2 { name="TurboNorm"; version="1.36.0"; sha256="17jxsgi3096xcyfddanqm38cd1gm5agmxzqcpyr07ys7snqy9vdf"; depends=[affy convert lattice limma marray]; }; + TxRegInfra = derive2 { name="TxRegInfra"; version="1.8.0"; sha256="07z97cs3dv4d3a5q36k8lslg2ic8r3f8dhk0hq4d52r2wcg8axnx"; depends=[BiocParallel GenomeInfoDb GenomicRanges IRanges mongolite RaggedExperiment rjson S4Vectors SummarizedExperiment]; }; + TypeInfo = derive2 { name="TypeInfo"; version="1.54.0"; sha256="0n87i1r67mnj1zjzrb7mrjpnailwhcg09pnhy6yhw1r0cmr5m408"; depends=[]; }; + UNDO = derive2 { name="UNDO"; version="1.30.0"; sha256="0cyar3ihskfqmxh1k2n5nm9f28ykizcradnzam8cijdp99xk7w0n"; depends=[Biobase BiocGenerics boot MASS nnls]; }; + Ularcirc = derive2 { name="Ularcirc"; version="1.6.0"; sha256="0g11gv4swahm7lq2lm9jzmzqkbd32lhwxp2h5ksrqm1l4ay81565"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr S4Vectors shiny shinydashboard shinyFiles shinyjs Sushi yaml]; }; + UniProt_ws = derive2 { name="UniProt.ws"; version="2.28.0"; sha256="020gdjdkwgzgzp5pw9m7ddf0p83r19pw2ank057drdsz1kwdvpj8"; depends=[AnnotationDbi BiocFileCache BiocGenerics rappdirs RCurl RSQLite]; }; + Uniquorn = derive2 { name="Uniquorn"; version="2.8.0"; sha256="0c134p1s6rxlchf2486ygnknjygc7b5x9bisa6x7s6ycq0g5bm0q"; depends=[doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; + VCFArray = derive2 { name="VCFArray"; version="1.4.0"; sha256="1wck7rdvbzl1hg08n6ynyqqa0dswqczqzp70n2h138a588j9c0ry"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + VanillaICE = derive2 { name="VanillaICE"; version="1.50.0"; sha256="0mh6y7zf464qy1qvxhcngp2lc61nmp6c3jzwvbxvbsdasj1wqcps"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; + VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.34.0"; sha256="09y6ymwky839nb0y7y93w810hk9mvwqn7595q1276c28dkddiqvw"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; + VariantExperiment = derive2 { name="VariantExperiment"; version="1.2.0"; sha256="1g6khmhcpd36hq3vl80b69ib1jsczybb148kfmhk20sxkzdbwzja"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SeqVarTools SNPRelate SummarizedExperiment]; }; + VariantFiltering = derive2 { name="VariantFiltering"; version="1.24.0"; sha256="0lsrnybsbm9siyjv4nal6bmprj8ynwgk4n1145f4h52g78wq3br4"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; + VariantTools = derive2 { name="VariantTools"; version="1.30.0"; sha256="0g93rljlmhk1d53z0bgi84i2cn5c3r1dpm8id2pv0nk9ncdh3yxx"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + Vega = derive2 { name="Vega"; version="1.35.0"; sha256="08c5l8ryk2fpzqm9s9m4p21w9wfawp54zjyxhxg0g2whr69lxxv2"; depends=[]; }; + VegaMC = derive2 { name="VegaMC"; version="3.26.0"; sha256="0xwvvylj4wfmgnfz6fsdvybza98qa7aag1h4pjmkq5nsypxqd71b"; depends=[Biobase biomaRt genoset]; }; + VennDetail = derive2 { name="VennDetail"; version="1.4.0"; sha256="1c2gpg2jpmf7w2rv8hy2r5xnbr7rkxnhi2h596hz9nb6bkas158a"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; + ViSEAGO = derive2 { name="ViSEAGO"; version="1.2.0"; sha256="06w36pxas7fh3x2rm4yj068rzwdkhyxvnja3kgyqv4w4xwc2k3j9"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly R_utils RColorBrewer scales topGO UpSetR webshot]; }; + Wrench = derive2 { name="Wrench"; version="1.6.0"; sha256="05dyk3yvbqrzvinv3ig8ad9wffwr14z715cicsbxwxpv5lq84wx6"; depends=[limma locfit matrixStats]; }; + XBSeq = derive2 { name="XBSeq"; version="1.20.0"; sha256="13br7x1q6dg8daxahskwq24f09wbxr8kyszl1z7dhc26bid2pvy0"; depends=[Biobase DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma roar]; }; + XCIR = derive2 { name="XCIR"; version="1.2.0"; sha256="1wr3n36yx1cki0j2jvjh0a4flzr1gq09n1nyp10lwa8f5g0np3iw"; depends=[biomaRt data_table ggplot2 IRanges readxl S4Vectors seqminer VariantAnnotation]; }; + XDE = derive2 { name="XDE"; version="2.34.0"; sha256="1k9nd5vv77rchxwd0bc4n4ma484152d963kqipfialb7j0w5x513"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools MergeMaid mvtnorm RColorBrewer siggenes]; }; + XINA = derive2 { name="XINA"; version="1.6.0"; sha256="0k3w3cbp7gv1pv0ylz6gq619hq0i4dm2955s4pawfm7lgh5nls3m"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; + XVector = derive2 { name="XVector"; version="0.28.0"; sha256="11h1hszv4798q1gbx8r6zf8vlaqx4v9ql0lbh2xaxybp66a03pvc"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; + Xeva = derive2 { name="Xeva"; version="1.4.0"; sha256="0x5gg018bgmv9dpawzpqf64k05rdrhwk30zxd4yfbxxfq8r7pa8m"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; + YAPSA = derive2 { name="YAPSA"; version="1.14.0"; sha256="06lkf01vl4fyhj82srx8k870fhw76a1han0kp4jglh43b1c19c1k"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST magrittr PMCMR pracma reshape2 SomaticSignatures VariantAnnotation]; }; + a4 = derive2 { name="a4"; version="1.36.0"; sha256="1rzxg1h48jnlwqfjyyqzz6i3zlkfzc0i714rfplry7dyni6asgr7"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; + a4Base = derive2 { name="a4Base"; version="1.36.0"; sha256="0b7fy1wcydb9z43wb1663skswvhivn7ji15g00gqcshwkkiq4x02"; depends=[a4Core a4Preproc annaffy AnnotationDbi Biobase genefilter glmnet gplots limma mpm multtest]; }; + a4Classif = derive2 { name="a4Classif"; version="1.36.0"; sha256="0bj8m4nprw3maahd1qx9jjdxfip9ihbbpydbzwjxn6dlgw2i8mcr"; depends=[a4Core a4Preproc glmnet MLInterfaces pamr ROCR varSelRF]; }; + a4Core = derive2 { name="a4Core"; version="1.36.0"; sha256="1hn9lkaib1bx5n52as882f8zwsln8w40sx8hxbrnimjvgfxrbvnp"; depends=[Biobase glmnet]; }; + a4Preproc = derive2 { name="a4Preproc"; version="1.36.0"; sha256="1hy3jvhdjyjzzmw5wkil3cs26hvqnb056r09x0p2bjg5sc9hh8b8"; depends=[AnnotationDbi]; }; + a4Reporting = derive2 { name="a4Reporting"; version="1.36.0"; sha256="1jhlxqwfbgflcyzy9gyxznzcadj9zxchl3lfdlc4ffm0hwz5jl2f"; depends=[annaffy xtable]; }; + aCGH = derive2 { name="aCGH"; version="1.66.0"; sha256="0zmxxg2lfxf484abm580qn0zdpavcmxw1f7g25cf0bh6zl03mifj"; depends=[Biobase cluster multtest survival]; }; + abseqR = derive2 { name="abseqR"; version="1.6.0"; sha256="0pzyfn0jv41rja6l4jbgwgsqy0q1d3kz23m9m6pc67p2a231i9c5"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; + acde = derive2 { name="acde"; version="1.18.0"; sha256="0rvvniwl0gj6a4qbkgv813ra1xdc6rywdkx49zg9q368l7fiy1vl"; depends=[boot]; }; + adSplit = derive2 { name="adSplit"; version="1.58.0"; sha256="0ypznp0xbf3kwlia4nzl3jj0c7v91grc4hf33hx8bxid5h14rarl"; depends=[AnnotationDbi Biobase cluster GO_db KEGG_db multtest]; }; + adaptest = derive2 { name="adaptest"; version="1.7.1"; sha256="0bd1yz32jwx5zr1fhppwkji2d689agjw3iqxjxl8z5j91jmxzaa9"; depends=[calibrate origami S4Vectors SummarizedExperiment tmle]; }; + adductomicsR = derive2 { name="adductomicsR"; version="1.4.0"; sha256="15xmfmxszzpw27hcnjgqf4cvmvrr43gh00v805lrb44w8kw3b8jf"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; + affxparser = derive2 { name="affxparser"; version="1.60.0"; sha256="0d4hq1w0a3dm4bg9qsv7wqrbv2y7b9gllxfmnqs9n2nnwmvgi8yq"; depends=[]; }; + affy = derive2 { name="affy"; version="1.66.0"; sha256="0m6hkyjxmsf80n3anhwh9k26csxczv6v92fkb7klnchdski61pyc"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; + affyContam = derive2 { name="affyContam"; version="1.46.0"; sha256="1dh5c3blk2dl9kg13y6snplnx61x2f9hvp5lc7jmg25xk916517i"; depends=[affy affydata Biobase]; }; + affyILM = derive2 { name="affyILM"; version="1.40.0"; sha256="0pinfxwywch20bzw66rq83z0phkzzdjm1zjl8avs6n16dfkxnb7q"; depends=[affxparser affy Biobase gcrma]; }; + affyPLM = derive2 { name="affyPLM"; version="1.64.0"; sha256="1skhsfr5kmyjyyn2f172qijzrs1xcyh4fx6g384lsxpgjadkmmn3"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; + affyPara = derive2 { name="affyPara"; version="1.48.0"; sha256="03aipivjy8xialvrl98sgi1gc6jhnq4izhhllxm8hrjsxbq8vi5r"; depends=[affy affyio aplpack snow vsn]; }; + affyQCReport = derive2 { name="affyQCReport"; version="1.66.0"; sha256="1zvk5qxi99a8991fc6y8dx4pk3ky5x5l21llmz8rzha6pv82yxsm"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; }; + affycomp = derive2 { name="affycomp"; version="1.64.0"; sha256="0zg8dshas5b2ny4pnxxxqihnr4l20666ivrgglb939a23mplgps0"; depends=[Biobase]; }; + affycoretools = derive2 { name="affycoretools"; version="1.60.1"; sha256="0cnb54b3kmg9rnycvaz949bdali9n98qzrw7gwka6abmg1lv232s"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; + affyio = derive2 { name="affyio"; version="1.58.0"; sha256="0j1f61409yq6hmkqrpzamfm7dx35rlq33ccs7wb1qcqx3d3nb75q"; depends=[zlibbioc]; }; + affylmGUI = derive2 { name="affylmGUI"; version="1.62.0"; sha256="1bdxslf7615a8vxy06da049r1w4m8nmwzmrqvyhszhi0snb2ycjf"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; + agilp = derive2 { name="agilp"; version="3.20.0"; sha256="0wgwrl6ip7kcl2qvbmrdmrxsc53fyjfgrmqfvyi609ip7pf7js6n"; depends=[]; }; + alevinQC = derive2 { name="alevinQC"; version="1.4.0"; sha256="07fsy956pswj47n1agxzz1526wlffm6pf817rx19mb7wk61p0gsw"; depends=[cowplot dplyr DT GGally ggplot2 rjson rlang rmarkdown shiny shinydashboard tximport]; }; + alpine = derive2 { name="alpine"; version="1.14.0"; sha256="017gkfk3x57nyd78pqhlygivgzdgw7ww5wd923v4dc8cvvd8scnf"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; + alsace = derive2 { name="alsace"; version="1.24.0"; sha256="0hdjq38mq4s7bcad2zw3509y5hv7019lzw8jgapfgc3xphz4jmjr"; depends=[ALS ptw]; }; + altcdfenvs = derive2 { name="altcdfenvs"; version="2.50.0"; sha256="11f5348xvhqq2hds0ncj83lg2j9ddl1wm7a3lcqyjp57z2p8li7i"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; + amplican = derive2 { name="amplican"; version="1.10.1"; sha256="03yidcwqw1nq5ddpip0ynmk39gasa1ig3rrms9kad3hvjx6vjar5"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; + animalcules = derive2 { name="animalcules"; version="1.4.0"; sha256="1zw3xqpn8hzw9ldqvpbrrz36nj50yg0gps46bybs58bcpma755ay"; depends=[ape assertthat biomformat caret covr DESeq2 DMwR dplyr DT forcats ggplot2 glmnet lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC reactable rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; }; + annaffy = derive2 { name="annaffy"; version="1.60.0"; sha256="1rc9fb83by9jfgwfj2zhhbj93v296blwd8jl2rh7jj200mrpznn4"; depends=[AnnotationDbi Biobase DBI GO_db KEGG_db]; }; + annmap = derive2 { name="annmap"; version="1.30.0"; sha256="06nmcyiqlsdvm7ip5pipcqkda0v4838jnm8qvq8vwc9s66jb6a90"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; + annotate = derive2 { name="annotate"; version="1.66.0"; sha256="1ivszqknryq6n5a85z8zj12fvgcs6zz3zlza8q08pl6cs4m5rm4w"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl XML xtable]; }; + annotationTools = derive2 { name="annotationTools"; version="1.62.0"; sha256="1b1yfnknr9vbn4y2mxdfyx57i5jbabhp9pwx8axlg2a7lawkfmdk"; depends=[Biobase]; }; + annotatr = derive2 { name="annotatr"; version="1.14.0"; sha256="0z3ydcybd81w543fw8fiblghndx5m28w8qsphh5vqj726i0nj8cl"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; + anota = derive2 { name="anota"; version="1.36.0"; sha256="1ind5cyq85l63xpqmg2n9rg805s5amh48iiw05zqr8kih6hlilpm"; depends=[multtest qvalue]; }; + anota2seq = derive2 { name="anota2seq"; version="1.10.0"; sha256="1wjlf3h56bdr88m5xzfnnhpybnihmm15jq6jxalm41fnqvw1pxn0"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; + antiProfiles = derive2 { name="antiProfiles"; version="1.28.0"; sha256="13gxbzmd23jv0hcd4ibz5ws305anwhnhksajmqdvzc363xy9m8wd"; depends=[locfit matrixStats]; }; + apComplex = derive2 { name="apComplex"; version="2.54.0"; sha256="0r4ggh9yl70aidcnzyinzyd4jl9rlack7mna3vzfjmii49xb7a4g"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; + apeglm = derive2 { name="apeglm"; version="1.10.0"; sha256="1dja9x7fyzlzzr03c3r5gc3q123cs08kf0mawsbg1hy7bqh639di"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; + appreci8R = derive2 { name="appreci8R"; version="1.6.0"; sha256="0z4ywqmynj56ib44i823ckaw4ka2d5hajb0v8bgs2zj8mm6fl7fa"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; + aroma_light = derive2 { name="aroma.light"; version="3.18.0"; sha256="19y5f2minx2pp73zdh43v1qkwpkaxygkl8cwlnwja15i46s0bcyc"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; + arrayMvout = derive2 { name="arrayMvout"; version="1.46.0"; sha256="1gphcjplhjzswzipfvlsvjq2a0jqcy8yiz4i6nyizlq5iarmbxmm"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; }; + arrayQuality = derive2 { name="arrayQuality"; version="1.66.0"; sha256="1abyylcvy5wg6xcdrjfhyc02mzm99sd1nfqzzj1241niih2zg9an"; depends=[gridBase hexbin limma marray RColorBrewer]; }; + arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.44.0"; sha256="0k2l4rcds5d4yhxsi492j4q89gwbd72dq4aqdip57j9drf00ndya"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; + artMS = derive2 { name="artMS"; version="1.6.5"; sha256="1pq35d18sknkqbgp1yawd66380bz8b8xgncpfj5kf188ascvbq18"; depends=[AnnotationDbi biomaRt bit64 circlize cluster ComplexHeatmap corrplot data_table dplyr factoextra FactoMineR getopt ggdendro ggplot2 ggrepel gplots gProfileR limma MSstats openxlsx org_Hs_eg_db org_Mm_eg_db PerformanceAnalytics pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; + atSNP = derive2 { name="atSNP"; version="1.3.0"; sha256="0bp19w9zcxn3qwssxr35bj4dgscr1qbiwcwzqsq866pbnkj77pyj"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 motifStack rappdirs Rcpp testit]; }; + attract = derive2 { name="attract"; version="1.40.0"; sha256="1qzg3ksv0v4crrizs0lbfz23lpssp52pcs39m885favb4v34wyp3"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; + bacon = derive2 { name="bacon"; version="1.16.0"; sha256="066b9vyp8ivnzm9741mb5z763a7z40ar9m8w31yw84fjiv01v3dl"; depends=[BiocParallel ellipse ggplot2]; }; + ballgown = derive2 { name="ballgown"; version="2.20.0"; sha256="0ipy9ixg3skf7fwgzgpidjxrkvl37cy5ghnm2lraby6411drz2hd"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; + bamsignals = derive2 { name="bamsignals"; version="1.20.0"; sha256="0p858xxfv79yc8b3lq58zl9f00irvbn3czsd8wdi5040xg42m402"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; + banocc = derive2 { name="banocc"; version="1.12.0"; sha256="1974bs41hh67cdl4pahp6swix1m44zrvgvdgilf6qginzkhd2hca"; depends=[coda mvtnorm rstan stringr]; }; + basecallQC = derive2 { name="basecallQC"; version="1.12.0"; sha256="0v1f0fs7dj1k0aaz4ggcs5bsnx968s04rynak5c915dwk4qcz5nv"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; + basilisk = derive2 { name="basilisk"; version="1.0.2"; sha256="1649c6cd2cyra49kmi5bhvsxd8m5appp3swlxwacmzhxjhz4pz64"; depends=[basilisk_utils reticulate]; }; + basilisk_utils = derive2 { name="basilisk.utils"; version="1.0.4"; sha256="18gj6vswd8c3m0kf7sya6a4d77jiswn9grnhh756g7l0hz0i6v0i"; depends=[rappdirs]; }; + batchelor = derive2 { name="batchelor"; version="1.4.0"; sha256="11c8an3qcrlxqr4zf0zldskqnp4dj5cipa80lmngpf0c2a3b6gli"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp S4Vectors scater SingleCellExperiment SummarizedExperiment]; }; + bayNorm = derive2 { name="bayNorm"; version="1.6.0"; sha256="0d72sarxn6zjy33k06l70wzlpdcdw5zff3anmb3jjbrnf251wwi6"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; + baySeq = derive2 { name="baySeq"; version="2.22.0"; sha256="1x0d34pqv9s15nmmxsfbw0ycxbf5348mi30ahycarjkjsyzycymj"; depends=[abind edgeR GenomicRanges]; }; + bcSeq = derive2 { name="bcSeq"; version="1.10.0"; sha256="1rwgdrjwvlq7lazixx1g9pb6rb1h3ksffh9sscjgz94h808dmkwy"; depends=[Biostrings Matrix Rcpp]; }; + beachmat = derive2 { name="beachmat"; version="2.4.0"; sha256="1vl6jbf9ia78cm4ikdb8vz04jv4b46zhvg5i006c63a9pzw7zhxi"; depends=[BiocGenerics DelayedArray Matrix]; }; + beadarray = derive2 { name="beadarray"; version="2.38.0"; sha256="1yg0039zyj0azb28kz6ljrd2nwc7afvncmqqsi0d72fjlznh6rrh"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; + beadarraySNP = derive2 { name="beadarraySNP"; version="1.54.0"; sha256="0c6fhl9h1f3rm9a1qi5p8jfaj94iffjg2jzdksns2mf2mcjhky4k"; depends=[Biobase quantsmooth]; }; + bgafun = derive2 { name="bgafun"; version="1.49.0"; sha256="0hp1kljv7dx6p3g4k9frsrgspg2gfr1mnypgwz05f6ll3zfjfm1c"; depends=[ade4 made4 seqinr]; }; + bgx = derive2 { name="bgx"; version="1.54.0"; sha256="0r67a6m5hrnsxgk0f57hl5yaagi2wai2kpfyjjlhrck4rlm1sjcx"; depends=[affy Biobase gcrma Rcpp]; }; + bigPint = derive2 { name="bigPint"; version="1.4.0"; sha256="1m92ngkzimcc37byf0ziphrby8wmjd5hfa53gvfphgaakyj9bjg8"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; }; + bigmelon = derive2 { name="bigmelon"; version="1.14.0"; sha256="1cryjhbiacm45g097rpqgbva49hs5vdx4y4h5h2v1gw4k78hwb4y"; depends=[Biobase BiocGenerics gdsfmt GEOquery methylumi minfi wateRmelon]; }; + bigmemoryExtras = derive2 { name="bigmemoryExtras"; version="1.36.0"; sha256="053bqcd3p4i7agj43ccjxfz40a1sxrymd49vdpfq8ypslkwk7g0g"; depends=[bigmemory]; }; + bioCancer = derive2 { name="bioCancer"; version="1.16.0"; sha256="0zcp33bcxcgxfjgvcklasnw52l84j3khr1bk0wvi0q5xdaz6v3pa"; depends=[AlgDesign AnnotationFuncs Biobase cgdsr clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier htmlwidgets org_Hs_eg_db plyr r_import radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; + bioDist = derive2 { name="bioDist"; version="1.60.0"; sha256="17bvxk0anvsp29j5nbblvaymf8qgbj3sz4ir2l7wj8kb8jfi19cp"; depends=[Biobase KernSmooth]; }; + bioassayR = derive2 { name="bioassayR"; version="1.26.0"; sha256="1n0gsnxcl0lplqk8rs5ygxrxpx389ddl6wv3ciyz9g2xry5biyfy"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; + biobroom = derive2 { name="biobroom"; version="1.20.0"; sha256="06qcrprn58kbrr5kyw1jl6z88b9w9g8xs6rkhrbnz8k7rv373fhf"; depends=[Biobase broom dplyr tidyr]; }; + biobtreeR = derive2 { name="biobtreeR"; version="1.0.0"; sha256="1vl06mv3ns0bnxd5sjypidw5v1spjqz8gvrjm5x5cwsdgg9zrvqn"; depends=[httpuv httr jsonlite stringi]; }; + biocGraph = derive2 { name="biocGraph"; version="1.50.0"; sha256="1372bm4y3czqhpki10pnprxfkfncfcsy59zzvf8wj6q03acaavrj"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; + biocViews = derive2 { name="biocViews"; version="1.56.2"; sha256="0kw0qfm1fw5yv2rbz6x23431rh0fnzj66f2bls7j285biyjmmx7w"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; + biomaRt = derive2 { name="biomaRt"; version="2.44.1"; sha256="0np4nh3gj60mgb6312z7x0z9fg5bhrhw872sp3dzgmqc8q8b84iz"; depends=[AnnotationDbi BiocFileCache httr openssl progress rappdirs stringr XML]; }; + biomformat = derive2 { name="biomformat"; version="1.16.0"; sha256="1l126nd1jmix4x3lh9my5nskc9bzbzrbz1brr23677vplfhrhy38"; depends=[jsonlite Matrix plyr rhdf5]; }; + biomvRCNS = derive2 { name="biomvRCNS"; version="1.28.0"; sha256="0bzw6pm0xgbi1gc3ybvf07hvih4k61hhpxk67gsqiq2w50010hp8"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; + biosigner = derive2 { name="biosigner"; version="1.16.0"; sha256="1v760q7hzaybkf2q9230rmr4phi8hglm59qwsjzvncxrhs3dpj06"; depends=[Biobase e1071 MultiDataSet randomForest ropls]; }; + biosvd = derive2 { name="biosvd"; version="2.23.0"; sha256="0piwwd2shwhflywp7rsq224hbd1g6av4a8hflzi29nd7xngrhv5f"; depends=[Biobase BiocGenerics NMF]; }; + biotmle = derive2 { name="biotmle"; version="1.12.0"; sha256="1la5g8shbas83j2v9ibzxrwc324bfi6ljj55ni7f6z15i39a5a32"; depends=[assertthat BiocGenerics BiocParallel doFuture dplyr drtmle future ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; + biovizBase = derive2 { name="biovizBase"; version="1.36.0"; sha256="1vq2mxa2jkljgw75zqjdkyml0ppi5dspvwj4cznfhi31cq8ds0qh"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + birta = derive2 { name="birta"; version="1.31.0"; sha256="00a1kcfmcgdbx6wpnhk45wm45bynhry5m93l9hm75j2rwyc4lnca"; depends=[Biobase limma MASS]; }; + biscuiteer = derive2 { name="biscuiteer"; version="1.2.0"; sha256="1d108y6d45hnagvd8afpnfa5jwkps1nsinyak1zwdas3dhwfl036"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + blacksheepr = derive2 { name="blacksheepr"; version="1.2.0"; sha256="0vz8b4r8fr2nlm3hbi150cdx3739m0rwddijyimjfvfhkn5d6fw4"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; + blima = derive2 { name="blima"; version="1.22.0"; sha256="1ndp1kajz1m80hafi6glkqcwk0w9sa7gc3d1y1c6ypxw0pgj59qh"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; + bnbc = derive2 { name="bnbc"; version="1.10.0"; sha256="0xcrka3pq7aapsnsdh26d401wdnf6hyqskdnpc6jnx9dr76q33s7"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; + brainflowprobes = derive2 { name="brainflowprobes"; version="1.2.0"; sha256="12w73p9lf74qc856nhml0qnjirgb6skgya6mdrla4lxanvjlyh4j"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; + branchpointer = derive2 { name="branchpointer"; version="1.14.0"; sha256="0jcs4blf8irwmixp225rrpp4daw4mr78p0vx8wg3cq01wjinkasb"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; + breakpointR = derive2 { name="breakpointR"; version="1.6.0"; sha256="16q3dy7wib835233frxlq1aljiya9fkckwx9j67s4llxpyjn0n53"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; + brendaDb = derive2 { name="brendaDb"; version="1.2.0"; sha256="18pwjm9rxdj02gi920y9jv7qgv5xkj98ir30lzmw42q6inmz2qvl"; depends=[BiocFileCache BiocParallel crayon curl dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr xml2]; }; + bridge = derive2 { name="bridge"; version="1.52.0"; sha256="0cy35wcab4941s4136nqwwd27s4gqdgy06q0cvggld39jrpn467f"; depends=[rama]; }; + bsseq = derive2 { name="bsseq"; version="1.24.4"; sha256="0ymay9csrylpg6x9s7fgbr1mbw47skw9lqv2p7jn8fyilk2rbbcj"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; + bumphunter = derive2 { name="bumphunter"; version="1.30.0"; sha256="04y6spdx89j3bsq2xniqd3sbfmakwc0klbpzjlp1q2xs9kywr4dq"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; + cBioPortalData = derive2 { name="cBioPortalData"; version="2.0.7"; sha256="0v3k3iznfzn3419ixlm1zv5sjfj5arpiyvfy5fc1682g762zv3lk"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment rappdirs readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; + cTRAP = derive2 { name="cTRAP"; version="1.6.1"; sha256="09fwxr40q6wcqiwdr8q75sr5njrfl48jp6dl68z9a7parmpmgv9q"; depends=[biomaRt cowplot data_table dplyr fgsea ggplot2 ggrepel httr limma pbapply R_utils readxl reshape2 rhdf5 scales]; }; + caOmicsV = derive2 { name="caOmicsV"; version="1.18.0"; sha256="1cfqw7xvr4sr3b14w7slrvw093m4933c7717l9inlv0dj7jkz4g9"; depends=[bc3net igraph]; }; + calm = derive2 { name="calm"; version="1.2.0"; sha256="09by842lv26psr85sck0n94w011kjav4bm5bx4kwji7vrd12m869"; depends=[mgcv]; }; + canceR = derive2 { name="canceR"; version="1.22.01"; sha256="0y9xnl3akw4hxygnrk85g2ricimsim3g2n5w78i4id59xa415v75"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; + cancerclass = derive2 { name="cancerclass"; version="1.32.0"; sha256="0zikhdxmv4925df3i6q701gwsvyxdjqm5n98ql358v8ws99laz8q"; depends=[binom Biobase]; }; + casper = derive2 { name="casper"; version="2.22.0"; sha256="0dwhazn4bqdlmrxidfa5jlkmyhm8qp6nz0nwckhm4xpq8275apz1"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; + categoryCompare = derive2 { name="categoryCompare"; version="1.32.0"; sha256="0ih0gkkxlg87x2mls90kcwxpwpp1gw2r1al9j5rrs1l547nzb978"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; + cbaf = derive2 { name="cbaf"; version="1.10.1"; sha256="05a8f7bvq7gnb576csz1fr3h78d1rijr99k9wlij6lyix4ws9i9x"; depends=[BiocFileCache cgdsr genefilter gplots RColorBrewer xlsx]; }; + ccfindR = derive2 { name="ccfindR"; version="1.8.0"; sha256="07dcfw1696naib55js4h0sqlw3fbw4hp6942wvshzjkpjkkmd4qn"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ccmap = derive2 { name="ccmap"; version="1.14.0"; sha256="1qjpjk3ljb2wsxk7bjbvx3qqvn57y9gafvrqmvhpr9z2kggdbda0"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; + ccrepe = derive2 { name="ccrepe"; version="1.24.0"; sha256="0kyrrllpmrn2bbxyvfwxs1g9qvjxhisfw34b545z8hhjmdhlxlwk"; depends=[infotheo]; }; + ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.0.0"; sha256="0j79b1gg709i23r776h37gydnvvbg0hi60wkwlp0r638263l3qr1"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; + celaref = derive2 { name="celaref"; version="1.6.0"; sha256="0k1vzwr91l4cdb81lqxil5302888q94qrwc1y237734ldkrj1bhh"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; + celda = derive2 { name="celda"; version="1.4.6"; sha256="0afmvwl8s3crk48iag22whq3p7am3xw745gcy9mcp3hda128xlwq"; depends=[data_table dbscan DelayedArray dendextend digest doParallel enrichR foreach ggdendro ggplot2 ggrepel gridExtra gtable MAST Matrix matrixStats MCMCprecision plyr pROC RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment stringi stringr SummarizedExperiment uwot withr]; }; + cellHTS2 = derive2 { name="cellHTS2"; version="2.52.0"; sha256="11h7jyysl98mqqa6224sxrmrl19jghl8b7p3lkni4qgri9n0wdd2"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; }; + cellTree = derive2 { name="cellTree"; version="1.18.0"; sha256="050hyrghmbgc2rw0x9jzx787gnapa7xh5djp16bw0s3h20xqw0gl"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; + cellbaseR = derive2 { name="cellbaseR"; version="1.12.0"; sha256="0n7sv3wy71p32hffhrkhvxaj98m7j63hf6576yi0srllxgffr991"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; + cellity = derive2 { name="cellity"; version="1.16.0"; sha256="1b3cxmrqvngv916dwixalavag8c5dff2bw6asmcg4f89iszhailm"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; + cellscape = derive2 { name="cellscape"; version="1.12.0"; sha256="04dz7ps1zm1ylwhfa8r5b7mf885rr6z2lsbzrvr40v73sda71xg3"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; + cghMCR = derive2 { name="cghMCR"; version="1.46.0"; sha256="19kpn5hxwbyz056gkx82n4ll47wh56p1z122rriazyn803ds1r32"; depends=[BiocGenerics CNTools DNAcopy limma]; }; + chimera = derive2 { name="chimera"; version="1.30.0"; sha256="0jichdhmylkq8clf1w4dnr2p9nrpxny5w5lsmr5zw7l609nycv7i"; depends=[AnnotationDbi Biobase BSgenome_Hsapiens_UCSC_hg19 GenomicAlignments GenomicRanges Homo_sapiens Rsamtools TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + chimeraviz = derive2 { name="chimeraviz"; version="1.14.0"; sha256="0ip9xs7h7cxslwfkc4bf9axrx460jrbnn98h7b9rv5g3s38f1kly"; depends=[AnnotationDbi AnnotationFilter ArgumentCheck BiocStyle Biostrings data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; + chipenrich = derive2 { name="chipenrich"; version="2.12.0"; sha256="10h4dc04n341q495bvzp1wl0zpmgvjyykyfryk2j5xnfp9gn3mmw"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; + chipseq = derive2 { name="chipseq"; version="1.38.0"; sha256="0lh859s0aq73vac1phcgagf6n000qgq2xsk0bmfr61n5swifml2a"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; + chopsticks = derive2 { name="chopsticks"; version="1.54.0"; sha256="1dncsaqqxpl2k5l17hzabr0likrv1ndgwjwkf0zlg2nic0g54w11"; depends=[survival]; }; + chromDraw = derive2 { name="chromDraw"; version="2.18.0"; sha256="1s9glhiz1y08wgjiffisfh1x4pilqgnyias8wprfhmr7c3ya8plk"; depends=[GenomicRanges Rcpp]; }; + chromPlot = derive2 { name="chromPlot"; version="1.16.0"; sha256="10y6vl2wlvsqy242rax19wp06czsy9j4x6vcw7lmfrj9pbwc65km"; depends=[biomaRt GenomicRanges]; }; + chromVAR = derive2 { name="chromVAR"; version="1.10.0"; sha256="0igzsa206m29r7fhpkgkyllii30rd4kbiwqby8nz2cz86znmmx5w"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; + chromstaR = derive2 { name="chromstaR"; version="1.14.1"; sha256="1y71ipmg1wacx9ga1jyfzxr39s30kxfy9qji77fhxmalasvp9gbm"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; + chromswitch = derive2 { name="chromswitch"; version="1.10.0"; sha256="1ii4shpbr3k5gpvw1l9ihvdc34qjbzgq05bj31v2p3a9p8wx6ii2"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; + cicero = derive2 { name="cicero"; version="1.6.1"; sha256="0nf9yqg5krj26n4n82iyx3rsr84d46b17i9zfk35sh12l4xssbii"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; + circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.2.1"; sha256="0x6acd7gfbna9dv5c459sg1k89kz8q9wpp96d3rfgrwjlssx6vmm"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; + cisPath = derive2 { name="cisPath"; version="1.28.0"; sha256="0vc7j6j6f18hrvja38crmxq85hashwic21skfvz3379xv0qzhypj"; depends=[]; }; + cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.26.0"; sha256="1hjs1hjr6mb9iqy1ba10sc8mrhff4p8bra11gq9k4sc5axiwcdjp"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges seqinr]; }; + cleaver = derive2 { name="cleaver"; version="1.26.1"; sha256="0mjk3xkqjw095n6aq6rwljmkynscqm5m95z2niipjk9irwfj83a9"; depends=[Biostrings IRanges S4Vectors]; }; + clippda = derive2 { name="clippda"; version="1.38.0"; sha256="1kzx95i4mdvnv2m58a6amjj148a4s1x8f52g3axvwpll8slbfim1"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; + clipper = derive2 { name="clipper"; version="1.28.0"; sha256="1m49qq8kkwjii230hnmzispjig5q6mp94hp8m7lllyqi3h6zfaac"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; + cliqueMS = derive2 { name="cliqueMS"; version="1.2.1"; sha256="088cfayniypslls17hyc3yywkscs9904apck9hl1pazrcvr98pj7"; depends=[BH igraph matrixStats MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; }; + clonotypeR = derive2 { name="clonotypeR"; version="1.26.0"; sha256="1n15ffg16m4zcxpp5pzw71799v26qw1hik1vwrwdvckkzll1zgfy"; depends=[]; }; + clst = derive2 { name="clst"; version="1.36.0"; sha256="1d2z37n64axijj9l8gzpvxc4c25jp6vjanri67kzsdj87qvqf1k0"; depends=[lattice ROC]; }; + clstutils = derive2 { name="clstutils"; version="1.36.0"; sha256="1cs0b7svdy8a9w81hxw718b2i7mizijk2zhbad3n4jbgwn2w764l"; depends=[ape clst lattice rjson RSQLite]; }; + clustComp = derive2 { name="clustComp"; version="1.16.0"; sha256="1dda791njs1yk51kd4fxk16z0gd1wq5qfgb8amyvl7ik889ghc7h"; depends=[sm]; }; + clusterExperiment = derive2 { name="clusterExperiment"; version="2.8.0"; sha256="1ib4j5xfdx6pxgxl86dir8275k3s4xzxjzvrh7d61hb81gdyk0mw"; depends=[ape BiocGenerics cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats NMF phylobase pracma RColorBrewer Rcpp RSpectra S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; + clusterProfiler = derive2 { name="clusterProfiler"; version="3.16.1"; sha256="11zsgb8wbdv8r4c04iczz4aala4yw4ai7rz8igdzz87c0940nxkb"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim magrittr plyr qvalue rlang rvcheck tidyr]; }; + clusterSeq = derive2 { name="clusterSeq"; version="1.12.0"; sha256="18fgg8aqqhf5dg6jhi67dilnnca934wbmn0n9f3jqqylrcshr80z"; depends=[baySeq BiocGenerics BiocParallel]; }; + clusterStab = derive2 { name="clusterStab"; version="1.60.0"; sha256="1cm9hw13m90k6fxjcww0r0viq00lmpkafj69fz23gl82bbvb4l4x"; depends=[Biobase]; }; + clustifyr = derive2 { name="clustifyr"; version="1.0.0"; sha256="15qv2sqpqmc0slhqnwfixm0w006wzcz9pfhyx4pfaqp1wnn15nsc"; depends=[cowplot dplyr entropy fgsea ggplot2 Matrix matrixStats readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + cmapR = derive2 { name="cmapR"; version="1.0.0"; sha256="10lax92s5r904yl4rlzwksyq3cyr86y3xa5mzapjn7hwrzcvdd1q"; depends=[data_table matrixStats prada rhdf5 SummarizedExperiment]; }; + cn_farms = derive2 { name="cn.farms"; version="1.36.0"; sha256="0rn1n3mxjm6aznq87mpcchbiqr5g72cbn8575a3v07mf1lkid7sr"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; + cn_mops = derive2 { name="cn.mops"; version="1.34.0"; sha256="08izmymym17wfc23yhpbjh6d1iib5w0nrhgmg5sawl7k33nlmyyc"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + cnvGSA = derive2 { name="cnvGSA"; version="1.32.0"; sha256="14wr2akfyx2cqbbm5c399ivn7pnbshdnbkhc2ja7imxajd3nhcqh"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; + coGPS = derive2 { name="coGPS"; version="1.32.0"; sha256="0ls826knkyig2l885kmj3dk098q8p1v7p6n7bdxwzaf02sz41mx6"; depends=[]; }; + coMET = derive2 { name="coMET"; version="1.20.0"; sha256="16w8dm9d8rb45x12khydzqmvnbq4q40i2x26j3mw1dgk4p1vmjc5"; depends=[biomaRt colortools corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; + coRdon = derive2 { name="coRdon"; version="1.6.0"; sha256="0ivhmw8xyxck5wi9al1fpyjkphpyl9q76yp9yq59p1szrrwj6is8"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; + cobindR = derive2 { name="cobindR"; version="1.25.0"; sha256="0y9rwp5ygfa0l8inggb69lcq8d42iqq6n3sh369zn69kpksx417f"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust seqinr yaml]; }; + codelink = derive2 { name="codelink"; version="1.56.0"; sha256="0qhks6pdcgix5gi3cp42kiwwphf0a3ndznv3cg77qsck4mxb8imy"; depends=[annotate Biobase BiocGenerics limma]; }; + coexnet = derive2 { name="coexnet"; version="1.10.3"; sha256="1wl2va62xphmg3xi68vr4vfnf4g9jxsqjr0i4w0mmsxmiv1zmb0s"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; }; + cogena = derive2 { name="cogena"; version="1.22.0"; sha256="1qhz17sly6q0ihd0z1346bhr0l660kn7yz9a1g8c8jdrkhjk8n4y"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; + cola = derive2 { name="cola"; version="1.4.1"; sha256="1bnwjwl93v68azm0sflsknffiabywvqicy5icx5qc5425hpkapmm"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest eulerr GetoptLong GlobalOptions httr impute knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; + combi = derive2 { name="combi"; version="1.0.0"; sha256="1v9lph8fffbivym93hj7v69s1ychfbl7nzv9bvixhkk46ynb1x74"; depends=[alabama BB Biobase cobs ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; + compEpiTools = derive2 { name="compEpiTools"; version="1.22.0"; sha256="16rcab4blq8vymqymivmnrkdzalsxkq3wnib1dyai5pqfzgrbp5p"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; + compartmap = derive2 { name="compartmap"; version="1.6.0"; sha256="1z3h9fms8ng750sysbd402vfxp88w5xx62p25m742pi4634a4klq"; depends=[GenomicRanges gtools Homo_sapiens minfi mixOmics SummarizedExperiment]; }; + compcodeR = derive2 { name="compcodeR"; version="1.24.0"; sha256="09r7x2b4h140i9p07g45ayxvg8pa7r7dnqcv1m2d9qjyh6qhji3x"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; + consensus = derive2 { name="consensus"; version="1.6.1"; sha256="0709qh0vqyhvmjg545n48k81djvqkzsh9km654kyp55d57rd06ly"; depends=[gplots matrixStats RColorBrewer]; }; + consensusDE = derive2 { name="consensusDE"; version="1.6.0"; sha256="0cllzf6bnnwhyyc2mbsl3qbb6c7jf0isrxyyr438wx3mpvmm6rf7"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; + consensusOV = derive2 { name="consensusOV"; version="1.10.0"; sha256="1x27dpn9pk2k0m5xr53zyk54kg93zjypq6jb1abwg1xj6f4zw9g4"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; + consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.16.0"; sha256="19x1apjymlxacb0y17pi197fqkdj7nv81rk1w0xxwb4i7iivdi00"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; + contiBAIT = derive2 { name="contiBAIT"; version="1.16.0"; sha256="1s646mky6pygapzg7zzgk5s7s88hyz3cbasn4lpj34gnq6hqa8pa"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; + conumee = derive2 { name="conumee"; version="1.22.0"; sha256="0wprcaqmqkx70sgvs2yg9k683kih3ff5af6rw8hjnhl7gvpg3fyd"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; + convert = derive2 { name="convert"; version="1.64.0"; sha256="19dn3h4w60bdqvnjq6w8izsaiz7rpsbdpyzp1n73bm7zx15qxm16"; depends=[Biobase limma marray]; }; + copa = derive2 { name="copa"; version="1.56.0"; sha256="1x600vb8lzc8kkmhwgw364yf3y2p7ilbipf5scnxfgi97zmmcliw"; depends=[Biobase]; }; + copynumber = derive2 { name="copynumber"; version="1.28.0"; sha256="1b7v6xijpi2mir49cf83gpadhxm5pnbs6d8q8qga7y06hn9jx6my"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; + coseq = derive2 { name="coseq"; version="1.12.0"; sha256="1bqvc1bqmvl69dllxm7klgzkk325yrpd80i7awnbvrqva8k8mkbl"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; + cosmiq = derive2 { name="cosmiq"; version="1.22.0"; sha256="1n2dkp1bqk8lmr4x0y39kay0jnkpa73ilr5wslg01sjgk2rlq77h"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; + countsimQC = derive2 { name="countsimQC"; version="1.6.0"; sha256="0b9pc9sg3whyd9jwb5cb414lyjqwxgg0h20lf4n916ifpspncgbb"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 randtests rmarkdown SummarizedExperiment tidyr]; }; + covEB = derive2 { name="covEB"; version="1.14.0"; sha256="1ichrnyim50khykxn9aapm255b1zni0rxxmysx2j7hgdnn80n6jh"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; + covRNA = derive2 { name="covRNA"; version="1.14.0"; sha256="1h2imvfjiqdnficsal6ql0bsj6amfw0rldh72d83qgciag7mznry"; depends=[ade4 Biobase genefilter]; }; + cpvSNP = derive2 { name="cpvSNP"; version="1.20.0"; sha256="05cgsscblfmkrgpzcwxh7yvql5548z1fyv3hm2x6mzsxaymmr9cd"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; + cqn = derive2 { name="cqn"; version="1.34.0"; sha256="1c8kffr5w5nppn7casg30zg0jn646vpvippn2xvybp0y41481cdm"; depends=[mclust nor1mix preprocessCore quantreg]; }; + crisprseekplus = derive2 { name="crisprseekplus"; version="1.14.0"; sha256="0j7as1ghdv66kqxagbldh01vixqczlzq080g0q8pvnkzrwhkp18v"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; + crlmm = derive2 { name="crlmm"; version="1.46.0"; sha256="0hr9pm5c0zmk7s4bknibqqwfk0i4z5ll6a4k2555g048d3n2s4m5"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; + crossmeta = derive2 { name="crossmeta"; version="1.14.0"; sha256="1i96cax37xi8npbxw1hpn0jm4zcnvqkgwpklz6isxlnk9h4pkv8c"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager ccmap data_table DBI doParallel doRNG DT fdrtool foreach GEOquery ggplot2 limma matrixStats metaMA metap miniUI oligo plotly RColorBrewer RCurl rdrop2 reader reshape RSQLite shiny stringr sva XML]; }; + csaw = derive2 { name="csaw"; version="1.22.1"; sha256="1qh4giiq61gsvrb84sjs5mgri7qiihvn8n6vf6lrg388nc3s9gbf"; depends=[AnnotationDbi BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicFeatures GenomicRanges IRanges limma Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; + ctc = derive2 { name="ctc"; version="1.62.0"; sha256="0lv126xj092hps3f3dsv7hasdyy26wcx8npl9idq2l4h9addk6v6"; depends=[amap]; }; + ctgGEM = derive2 { name="ctgGEM"; version="1.0.3"; sha256="1151kpz7d8mdvf3yq85m6hc4n7sdmrxiscgarf9f7ign1fkfhq1v"; depends=[Biobase BiocGenerics ggplot2 HSMMSingleCell igraph Matrix monocle sincell SummarizedExperiment TSCAN]; }; + ctsGE = derive2 { name="ctsGE"; version="1.14.0"; sha256="1zc59i09nk99ivqk4kjkvj4rj23czsfczwcb9zq010z9h2afy9yd"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; + cummeRbund = derive2 { name="cummeRbund"; version="2.30.0"; sha256="1av7yfxcq1wwbqfqcz7caiz5kf6kg5wq9qcg5v6yccihclzwvxjc"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; + customProDB = derive2 { name="customProDB"; version="1.28.0"; sha256="07bj1aq2vbz63m1pdri2nxx79q0kxmhqkfz61mqlcpc1x2z9dybi"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; + cycle = derive2 { name="cycle"; version="1.42.0"; sha256="0dgirkfgyd2fi7c75b72cz2xwjjwrfax2xs3klgj2w21ylqc86mq"; depends=[Biobase Mfuzz]; }; + cydar = derive2 { name="cydar"; version="1.12.0"; sha256="0f767cqdzxzx4bnch36xy11zpkmvf12hf1xzysh60jj7li1gbb7c"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; + cytofast = derive2 { name="cytofast"; version="1.4.0"; sha256="048iis4mb6w57ih7pswcz2a7y0vm7fzcxmqrns6dnhfffxqbg6pv"; depends=[flowCore FlowSOM ggplot2 ggridges RColorBrewer Rdpack reshape2]; }; + cytolib = derive2 { name="cytolib"; version="2.0.3"; sha256="123d1wlymq8r8d83as380h1dgw6v4s317acyvp1lsg2cpfp3gslj"; depends=[BH Rcpp RcppArmadillo RcppParallel Rhdf5lib RProtoBufLib]; }; + cytomapper = derive2 { name="cytomapper"; version="1.0.0"; sha256="03xrxlm9sr2dknxz1jj4cc8b9kxm8y00g1127wkx23ccsxwp2pqw"; depends=[EBImage raster RColorBrewer S4Vectors SingleCellExperiment SummarizedExperiment viridis]; }; + daMA = derive2 { name="daMA"; version="1.60.0"; sha256="17asy4wy185fzaphy65dh1b1sm2ic16i6h9dys2327p4b9y1ldr7"; depends=[MASS]; }; + dada2 = derive2 { name="dada2"; version="1.16.0"; sha256="1ifdzqyfqv7kxigf35k9fccg87kw77bb6gwr3580vw3wqrgj3w90"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; + dagLogo = derive2 { name="dagLogo"; version="1.26.2"; sha256="0b1rly29bslsvn1v7gbf77wh2260k3yr6ass99wc7klm6pz0vnxv"; depends=[BiocGenerics biomaRt Biostrings grImport2 motifStack pheatmap UniProt_ws]; }; + dcGSA = derive2 { name="dcGSA"; version="1.16.0"; sha256="0wv9jhiqnry1zgq9dw7w98c3ywv7avkkaxpiphgs1mkiqz3fvy66"; depends=[BiocParallel Matrix]; }; + dcanr = derive2 { name="dcanr"; version="1.4.0"; sha256="1rx06hjsjmv1y0s799idcpszjc56bm8qwyv668j8y0szy3gz9shv"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; + ddCt = derive2 { name="ddCt"; version="1.44.0"; sha256="0d80bcxs3skbqkn49p5aym972vm3cqnz34gh4kh5ddz4ix1d9l4l"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; + ddPCRclust = derive2 { name="ddPCRclust"; version="1.8.0"; sha256="1il123xc37pckj58nlh8vzbdmfwi9qqghdvkl5948c747swrfyy1"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; + dearseq = derive2 { name="dearseq"; version="1.0.0"; sha256="1v2w3b9z638vqwjqfssibkbjvydby4d73jqj5h87sbsapgjhcvqq"; depends=[CompQuadForm ggplot2 KernSmooth matrixStats pbapply statmod]; }; + debCAM = derive2 { name="debCAM"; version="1.6.0"; sha256="0ifbn3vmlrpi4d2ybqhvygndqa200h0hb0b47523fx0vw985f9k5"; depends=[apcluster Biobase BiocParallel corpcor DMwR geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; + debrowser = derive2 { name="debrowser"; version="1.16.2"; sha256="1iz1mjsarrc0xrrm7nlk7llbhsja47a039chs5ahrjg4bsj52wpf"; depends=[annotate AnnotationDbi clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; + deco = derive2 { name="deco"; version="1.4.0"; sha256="05rzdk88grl05vwpzvrd1p6bwg1sx6fbvnlzmh9mb0ls668gj2h7"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; }; + decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.4.1"; sha256="014z3p784v53bv3wpx1njcc0xzwg1hklaa44qjvg9x7j95vrpmq9"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + decontam = derive2 { name="decontam"; version="1.8.0"; sha256="10y3iydzgwbr9ixyyylzxkd7jfg0qz14gmphmdhq94ys0frhwpxi"; depends=[ggplot2 reshape2]; }; + deepSNV = derive2 { name="deepSNV"; version="1.34.1"; sha256="1hagkdq06c3xsrba3c3bnqwwmk406f9plkdh66a4hypx6hbwp6k7"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; + deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.2.0"; sha256="0jyv5py0mg82m9sqxzqb761pmc9r9jdx15zn6m26c1mqg367iw25"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment]; }; + deltaGseg = derive2 { name="deltaGseg"; version="1.28.0"; sha256="076d0ncmm84nprnr98dmgd1zv71bxwp52yxfhci5bb5dyvymjzj9"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; + derfinder = derive2 { name="derfinder"; version="1.22.0"; sha256="1g5982r0gzmay05c49l2w6hicrqlzq6sv09bgri0kyn64amfpc1y"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; + derfinderHelper = derive2 { name="derfinderHelper"; version="1.22.0"; sha256="1ca2cgcw0z3csbggpa638ncamyrh8y9kyqlpp3qzp3i0m36fkamk"; depends=[IRanges Matrix S4Vectors]; }; + derfinderPlot = derive2 { name="derfinderPlot"; version="1.22.0"; sha256="0fw1a2hb50xv1cr0ngp35akwfnc0yza2bbpplysbnks7z9d4g7gf"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; + destiny = derive2 { name="destiny"; version="3.2.0"; sha256="0ik5vwxz9cci3glwgb5ff03sfyr4sjcp8ckfymlgmlm6fz8cp21n"; depends=[Biobase BiocGenerics ggplot_multistats ggplot2 ggthemes irlba knn_covertree Matrix pcaMethods proxy Rcpp RcppEigen RcppHNSW RSpectra scales scatterplot3d SingleCellExperiment smoother SummarizedExperiment tidyr tidyselect VIM]; }; + dexus = derive2 { name="dexus"; version="1.28.0"; sha256="03vxq6ln1did9rmv6hcb845xfismrq6s2253nlana840cywdwh1m"; depends=[BiocGenerics]; }; + diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.70.0"; sha256="076zdxrdsajqssdk8kw0919fkx5simlz7dd71ryia4wgdw5mqcqx"; depends=[minpack_lm]; }; + diffHic = derive2 { name="diffHic"; version="1.20.0"; sha256="0zq1sciyap52s8p7xjyd7ba2q1bpfwfhfadf0pns2n6yfw26z3if"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; + diffcoexp = derive2 { name="diffcoexp"; version="1.8.0"; sha256="1gja7dy83p8w4k8jvrjpcyqdyf4ihl9dilm62gafn0n0r1rqbfd0"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; + diffcyt = derive2 { name="diffcyt"; version="1.8.8"; sha256="1kq3zisgvi6kfra2sm17d01vw3rg0nz0vz5031jp2a96j7dryp98"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; + diffloop = derive2 { name="diffloop"; version="1.16.0"; sha256="1q38qi6qx0qv3dr20nvyaxdxrs5422104l7chkzazp38whd5a87r"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; }; + diffuStats = derive2 { name="diffuStats"; version="1.8.0"; sha256="10ln1c1ic44inxmi19fvxi4scnwl9qi5hpswhsnqsngql3yg69wp"; depends=[expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; + diggit = derive2 { name="diggit"; version="1.20.0"; sha256="1k6i7w70yizc8drsdvz05sdfyrxr7z7fflbznc1wpnfv54phx00m"; depends=[Biobase ks viper]; }; + discordant = derive2 { name="discordant"; version="1.12.0"; sha256="161y6xmzrsj88swii85v43q48n10snawzfz6305m2hsdj6463qxq"; depends=[Biobase biwt gtools MASS]; }; + distinct = derive2 { name="distinct"; version="1.0.3"; sha256="1a10v4ldgqqsk5lrnq1zi9pkw5brv9zys8bqdkfdb7xbc06yzgzq"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo SingleCellExperiment SummarizedExperiment]; }; + dittoSeq = derive2 { name="dittoSeq"; version="1.0.2"; sha256="1fj7chyv077ffqnqvh2vv7x9x2alibk92fz3sihdfb167l0acdp4"; depends=[colorspace cowplot edgeR ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + divergence = derive2 { name="divergence"; version="1.4.0"; sha256="0m87v1z2mjmy9b74aknzbal22r2rj55prqclpq68shg6g2iw8q8c"; depends=[SummarizedExperiment]; }; + dks = derive2 { name="dks"; version="1.34.0"; sha256="1mrixifn868p0wjl6fcal1wm7ngf942lgas35wn0z1sqxnzqxl9n"; depends=[cubature]; }; + dmrseq = derive2 { name="dmrseq"; version="1.8.0"; sha256="15lc0lgyn5lqb7hwgyvngrb9s5isg651fvc87mi9bh6b2wyp5r84"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; + doppelgangR = derive2 { name="doppelgangR"; version="1.16.0"; sha256="0is7j75n6p4gglnixgxzpjjybb7cdy0i405vhn0xwfshy9rs7i1s"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; + doseR = derive2 { name="doseR"; version="1.4.0"; sha256="1b6gqszng6fhb1ksqx9wckrlz2zc2iv33nd4g6l1lm8g4gfd9jyk"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; + dpeak = derive2 { name="dpeak"; version="1.0.0"; sha256="1kk3mjixk3gz3mzgg0l0gyw377j7jzqdb54fv26xkq9xzvhjpx3j"; depends=[BSgenome IRanges MASS Rcpp]; }; + drawProteins = derive2 { name="drawProteins"; version="1.8.0"; sha256="1dj28h6cjl3jsxxhjgrp0i9va2zy60sqk9smjm95npmv8ffy5nlq"; depends=[dplyr ggplot2 httr readr stringr tidyr]; }; + dualKS = derive2 { name="dualKS"; version="1.48.0"; sha256="097xnp1q0p4n64jwr76al7j50x57jw9wd7x9kww7g6w8n39r5b5r"; depends=[affy Biobase]; }; + dupRadar = derive2 { name="dupRadar"; version="1.18.0"; sha256="18b1syx9y2cd93zmzb6q5w19b5aw9zhka13rgd2q2pwwciql5m5a"; depends=[Rsubread]; }; + dyebias = derive2 { name="dyebias"; version="1.48.0"; sha256="14055dzs48kc33bdb0swn2nv3dyqg9nms4vx774420pm3bp2l013"; depends=[Biobase marray]; }; + easyRNASeq = derive2 { name="easyRNASeq"; version="2.24.1"; sha256="1zry5s3w3nznrks59sds45wjlrl660zi72167i9bvnqjz12c766a"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; + easyreporting = derive2 { name="easyreporting"; version="1.0.0"; sha256="031na11smry5gd082r16lv5piyrl3p0l28j7n2xdbccbgimk72x7"; depends=[rmarkdown]; }; + ecolitk = derive2 { name="ecolitk"; version="1.60.0"; sha256="0p1jm07zh0295h1l83gdwqy72sxl5i9qhvdp5ci0kpv3al50j0cr"; depends=[Biobase]; }; + edge = derive2 { name="edge"; version="2.20.0"; sha256="0z3mbw116gidcpkifhf34vm0dsv164wm1h34qpvjl8b2pi0w9g1c"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; + edgeR = derive2 { name="edgeR"; version="3.30.3"; sha256="1z9bkg08rgqn3jm2s4ndbj641w33wl8jd3j6m5if6h2nnw6011ic"; depends=[limma locfit Rcpp]; }; + eegc = derive2 { name="eegc"; version="1.14.0"; sha256="1afvvh79c1z89arz59xqy8q0bw57rl147cdbsccpmfvyr4hk4zxk"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; + eiR = derive2 { name="eiR"; version="1.28.0"; sha256="0b56y3bn0qgafjam42ldh5pxz22ck50l5ibm3vxb9zz5vl2q76gf"; depends=[BiocGenerics ChemmineR DBI digest gespeR RcppAnnoy RCurl RUnit snow snowfall]; }; + eisa = derive2 { name="eisa"; version="1.40.0"; sha256="1d8577idjqjrfmchbfnj62q4shlrv339sc6qkxvi656c417h2m07"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; }; + eisaR = derive2 { name="eisaR"; version="1.0.0"; sha256="1c0vaicyf26vg115c45ax3db5cijpvcx94rfk16675rc4pir7c14"; depends=[AnnotationDbi BiocGenerics edgeR GenomicFeatures GenomicRanges IRanges limma rtracklayer S4Vectors SummarizedExperiment]; }; + enrichTF = derive2 { name="enrichTF"; version="1.4.0"; sha256="0gwgdsw5qa7lfpdha89ywjpajiz04aanvp31qb0zm8c2clq0zsl8"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; + enrichplot = derive2 { name="enrichplot"; version="1.8.1"; sha256="01m3cp717ldfbz5w3yfywvjg6sfjzz7s3vlk7w268lmmcg6g6bz7"; depends=[AnnotationDbi cowplot DOSE europepmc ggplot2 ggplotify ggraph ggridges GOSemSim gridExtra igraph plyr purrr RColorBrewer reshape2 scatterpie]; }; + ensemblVEP = derive2 { name="ensemblVEP"; version="1.30.0"; sha256="1l4m5fzqjk2jka4iw242ad2nwjk20ppchg1f14r82954imv1ppzf"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; + ensembldb = derive2 { name="ensembldb"; version="2.12.1"; sha256="1vvchc04nshxc768fp31rxb603aj3hmq8xlh5qabcwf2c3z9719g"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; + epiNEM = derive2 { name="epiNEM"; version="1.12.0"; sha256="0gr616vbnbidd02znppgpybwg727xack9pi5hwcl68wszvg93y4q"; depends=[BoolNet e1071 graph gtools igraph lattice latticeExtra minet mnem pcalg RColorBrewer]; }; + epigenomix = derive2 { name="epigenomix"; version="1.28.0"; sha256="0xf7gl4djbjhj051zfcszflr8h2zp9z2q10b5aqd93qi8yf3lasz"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; + epihet = derive2 { name="epihet"; version="1.4.0"; sha256="1nsc1fz6jb4a9k3m02x4ggj5zy29vzadnvjwsfikidvrrr497j1b"; depends=[data_table doParallel EntropyExplorer foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; }; + epivizr = derive2 { name="epivizr"; version="2.18.0"; sha256="0php3zsga2lqanb533svkxcjjqzqmgahj93mk4p0zg60arlxy8j7"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + epivizrChart = derive2 { name="epivizrChart"; version="1.10.0"; sha256="0q2vbzg9nw4m1kzglm9cn74mjd66lgwmf7lx0vqvxp2c61nkyrhw"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; + epivizrData = derive2 { name="epivizrData"; version="1.16.0"; sha256="0840mij1f5g9q0kqj5k5pd4r7nw5cf11pj88qxabvp53bv8cdp7v"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; + epivizrServer = derive2 { name="epivizrServer"; version="1.16.0"; sha256="1fqiqxb5s49fi3vdxhhd35zjnwyn3x0h0x7zyisfwd2hgdq8smk8"; depends=[httpuv mime R6 rjson]; }; + epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.16.0"; sha256="0dmyq0p7d8y00qj66qqgvgs0j6yrzyknnf9y7xg297qlv9lc7pxa"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; + erccdashboard = derive2 { name="erccdashboard"; version="1.22.0"; sha256="1i40s23dsml1pdnaj7b8rfg3cy6flgj3n682xfdrcy8xq91cq31f"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; + erma = derive2 { name="erma"; version="1.4.0"; sha256="1ccfbq0r48sr3h8050w8zv8402h7nx09adr0xdyqlg7kwp9vd2l3"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; + esATAC = derive2 { name="esATAC"; version="1.10.0"; sha256="1jq6szin1g9brhhhf89g3ag5vwk4cy9621xfg1z9hp2r57arqyrs"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; + esetVis = derive2 { name="esetVis"; version="1.14.0"; sha256="034ggs4clj3fn2xnba9myslbnfwqjq01qlrcbmvpqdsf8a5mp5bg"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; + eudysbiome = derive2 { name="eudysbiome"; version="1.18.0"; sha256="0l523svbx0f5bl46sqwfpwpvy91bvbs8mdazk9zncs4s5prlkydp"; depends=[Biostrings plyr R_utils Rsamtools]; }; + evaluomeR = derive2 { name="evaluomeR"; version="1.4.0"; sha256="0rya24snqxsgb1b1x6ncrkpsviw70lawrpc5jlabl01ykjw0xhda"; depends=[cluster corrplot fpc ggdendro ggplot2 matrixStats MultiAssayExperiment plotrix Rdpack reshape2 SummarizedExperiment]; }; + exomeCopy = derive2 { name="exomeCopy"; version="1.34.0"; sha256="0kshrd345abglqc751s462mrhdzfmkyj0f8abcc9akl0f5489pp8"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + exomePeak2 = derive2 { name="exomePeak2"; version="1.0.0"; sha256="048vf45gmcb1qb7p2h28ysd6g7b6xvsl1ana77bfgcljvhg3fnkx"; depends=[apeglm Biobase BiocParallel Biostrings BSgenome cqn DESeq2 genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges mclust reshape2 RMariaDB Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + explorase = derive2 { name="explorase"; version="1.52.0"; sha256="0nqn6b9xwpnlbbwdpd30y9arj496jxk89irds00lvp6zddl10fpb"; depends=[limma RGtk2]; }; + fCCAC = derive2 { name="fCCAC"; version="1.14.0"; sha256="0g4abfmpl2vph3x08yqdnzphfhqxz3vl6fw6pxd4sc7rr0g4ni93"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; + fCI = derive2 { name="fCI"; version="1.18.0"; sha256="08l1x78fhr7sjgwl3i35zih2x15l7r07fxpclws1zdgglqp2vrkb"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; + fabia = derive2 { name="fabia"; version="2.34.0"; sha256="0qzz1w6jnrl8ynal0a4jc55j10zpjy9xzny5asw04nmjra3k1ih3"; depends=[Biobase]; }; + factDesign = derive2 { name="factDesign"; version="1.64.0"; sha256="05xd0pqhrkpnjhxif2dhff8hliq59p10x5fdrfyavh49xc0cym76"; depends=[Biobase]; }; + farms = derive2 { name="farms"; version="1.40.0"; sha256="1g55ph7yf7dng8s2pmza78jdv2257i48jzbw1fvshj76zgfdp4lk"; depends=[affy Biobase MASS]; }; + fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.24.0"; sha256="0k0hjpg9fddxxi8w242yb8hp34xvs9f36l7jw5l38zrrq7h2yr9l"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; + fastseg = derive2 { name="fastseg"; version="1.34.0"; sha256="1d48n245pzmvcpsz93lxb4frqh222gfhpmlvm0sb74skn16way63"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; + fcScan = derive2 { name="fcScan"; version="1.2.0"; sha256="1fpa0zgwxvyfcmd8j990m26dwbm3a2sk5ahfbbbnjfwhdlgc1mjb"; depends=[GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; + fcoex = derive2 { name="fcoex"; version="1.2.0"; sha256="0fh5qdgqwmzhrxhyn634r2nddkmvychivdp6jc5mgz34vjaqpj1f"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph network pathwayPCA progress scales SingleCellExperiment sna stringr]; }; + fdrame = derive2 { name="fdrame"; version="1.60.0"; sha256="1qhz55smi09d25wz7sxfrsfs35j3skrkj4scdqx5s32cqfymrzwh"; depends=[]; }; + ffpe = derive2 { name="ffpe"; version="1.32.0"; sha256="1fad647hwzm7x7vwx9w222jpxrwb4kp404wfsm5lwsj58vz9i8w5"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; + fgsea = derive2 { name="fgsea"; version="1.14.0"; sha256="0zbjj8al1ps7immxixsn5g8lvbmpmxvqwqbpdgsicxp00gb9bybc"; depends=[BH BiocParallel data_table fastmatch ggplot2 gridExtra Matrix Rcpp]; }; + fishpond = derive2 { name="fishpond"; version="1.4.1"; sha256="0xg9x7cib1lz4fsv1n07pli80limrs2nxpalz83iwx9l7v329l8r"; depends=[abind gtools Matrix matrixStats qvalue Rcpp S4Vectors SummarizedExperiment svMisc]; }; + flagme = derive2 { name="flagme"; version="1.44.0"; sha256="12w66wa4rbj0dbbg7zma8j432gwpfznrri7573i8jc3h9vwwazhm"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; + flowAI = derive2 { name="flowAI"; version="1.18.5"; sha256="091blmr0gq41wz1qvrb3w8b6a42sl8r93d6csk7nxb968bjl4ggf"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; + flowBeads = derive2 { name="flowBeads"; version="1.26.0"; sha256="1i7kivv4zjrwn98v85zqqzyk2z6l2sqsnqq2v88qm2icsqvnjvlg"; depends=[Biobase flowCore knitr rrcov xtable]; }; + flowBin = derive2 { name="flowBin"; version="1.24.0"; sha256="1hl2yysd8zlhbfd6az043ig9x6xajgpn5iw8yfbbgg60fds6bif8"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; + flowCHIC = derive2 { name="flowCHIC"; version="1.22.0"; sha256="038nsf1ml8k9yrca4hqhc7sa4i3wy2fspvwjpq3inkms4rfg4g2p"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; + flowCL = derive2 { name="flowCL"; version="1.26.0"; sha256="1npga2w533n1406fw8ngi2ba6nqmqlqzmd8vr2bvspzswhvxqmrv"; depends=[graph Rgraphviz SPARQL]; }; + flowClean = derive2 { name="flowClean"; version="1.26.0"; sha256="0ib8j882mfpc3whk5m57qj40kfz514marcd3yasclbmsqic66rsp"; depends=[bit changepoint flowCore sfsmisc]; }; + flowClust = derive2 { name="flowClust"; version="3.26.0"; sha256="06mkq9y41jax07x4knhvhzgrkgqdvpvcw604bxdk6bv9wx3ipq5b"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph mnormt]; }; + flowCore = derive2 { name="flowCore"; version="2.0.1"; sha256="1xalndmfidfzqwlppdanx7cnm4ysznq21ingmykhxni86s42kd8p"; depends=[BH Biobase BiocGenerics cytolib matrixStats Rcpp RcppArmadillo RProtoBufLib]; }; + flowCyBar = derive2 { name="flowCyBar"; version="1.24.0"; sha256="0spai1ibfbj27ky6fw62mnc09pydfldakg3svhlxny6m0y15ryza"; depends=[gplots vegan]; }; + flowDensity = derive2 { name="flowDensity"; version="1.22.0"; sha256="07p2v0c42bihqw9103m09hgff7b8m5mh67sgv63w88zgkm5ps8v3"; depends=[car flowCore flowViz flowWorkspace gplots RFOC rgeos sp]; }; + flowFP = derive2 { name="flowFP"; version="1.46.0"; sha256="1gmlfv8qd0ydj5mqa99ic4qvb996hdbydnrbma2yz76jsn2r7il8"; depends=[Biobase BiocGenerics flowCore flowViz]; }; + flowFit = derive2 { name="flowFit"; version="1.25.0"; sha256="0hrjf0df5hj57x89vgh6qidkjlxla783i8a9q35mf0nhz9c2gxrx"; depends=[flowCore flowViz gplots kza minpack_lm]; }; + flowMap = derive2 { name="flowMap"; version="1.26.0"; sha256="1lynla1avly5givr3aila2vm34hqm3580ad8qlyim61ib3kgfakq"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; + flowMatch = derive2 { name="flowMatch"; version="1.24.0"; sha256="16jzaqmb5igx2qpfqk26iryc5f1kj04klm7wgqvnl4m26iskgv16"; depends=[Biobase flowCore Rcpp]; }; + flowMeans = derive2 { name="flowMeans"; version="1.48.0"; sha256="1sv5vpwm3qdhkn1gdrk3n674harjcni91g63sqzfmybiwq8dlym7"; depends=[Biobase feature flowCore rrcov]; }; + flowMerge = derive2 { name="flowMerge"; version="2.36.0"; sha256="0142zkczz0z1668ds6m73ny3v139b5gc9p5j4v86njhb4absbagh"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; + flowPeaks = derive2 { name="flowPeaks"; version="1.34.0"; sha256="1cxzvgb6q9ydqail6hbsfzgi4dfnacsnzfqr4mygg8ffl31nmmmb"; depends=[]; }; + flowPloidy = derive2 { name="flowPloidy"; version="1.14.0"; sha256="0v2i70haiw805xcy7cjg3nnk1sjchbj9d95hlpvhc94dn890mpny"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; + flowPlots = derive2 { name="flowPlots"; version="1.36.0"; sha256="0w0sgcgpbw4zsrfphrbrv89v13jzp0kx8qj8wxf7sca5v8221z10"; depends=[]; }; + flowSpecs = derive2 { name="flowSpecs"; version="1.2.0"; sha256="1ndq9n1l88d6hhygv53jbwcj5yjmj65rpz6m2afjjg5r0cykk9za"; depends=[BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; }; + flowSpy = derive2 { name="flowSpy"; version="1.2.3"; sha256="0yq8mdzpm79qsfs6d3shl1drbl7y6fya59bv656r4kfgjvk03fb3"; depends=[Biobase BiocNeighbors cluster destiny flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; }; + flowStats = derive2 { name="flowStats"; version="4.0.0"; sha256="1ygvxvd7y6jp907y0h3hycdwvw1fch16w84g06nk4f4g4kvrzdir"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow RColorBrewer rrcov]; }; + flowTime = derive2 { name="flowTime"; version="1.12.0"; sha256="19rvq10rbj28z9yanj8svkhs6acng4gka3fabb67didiwsz30cjy"; depends=[flowCore plyr]; }; + flowTrans = derive2 { name="flowTrans"; version="1.40.0"; sha256="1yp0lrrcvydsjh69mr88cbqhj6r0blln92gjvsays92jhrc44lrk"; depends=[flowClust flowCore flowViz]; }; + flowType = derive2 { name="flowType"; version="2.25.0"; sha256="1q1hdwrpsi3zsbd630q4r2b5fg0ia8xa68kf6fz8c597ssccx0a0"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; }; + flowUtils = derive2 { name="flowUtils"; version="1.52.0"; sha256="03jj4zyffm9kwzrg4vbsk6clc2v2m95wgalgqwzi31n9a2zyaza4"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; + flowVS = derive2 { name="flowVS"; version="1.19.0"; sha256="15f343mhsc726da2q5d575lwrz56sm9z354pr0y3mlbawmg99078"; depends=[flowCore flowStats flowViz]; }; + flowViz = derive2 { name="flowViz"; version="1.52.0"; sha256="0f3jfwdmaq9wrgl737blk5gmpc29l9kb6nadqhxpvbjwqsnzx0yq"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; + flowWorkspace = derive2 { name="flowWorkspace"; version="4.0.6"; sha256="123ny8n3jjgmsnpghk1dafxkwmcyr513gxi8y4h4qszq4s6ai15v"; depends=[BH Biobase BiocGenerics cytolib data_table digest dplyr flowCore ggplot2 graph lattice latticeExtra matrixStats ncdfFlow RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib scales stringr XML]; }; + flowcatchR = derive2 { name="flowcatchR"; version="1.22.0"; sha256="07bi2shv5rpfdhnxhy6xqh8b6vnwkkr051z5infclf7z2mh7f9n9"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; + fmcsR = derive2 { name="fmcsR"; version="1.30.0"; sha256="1j9rx473v3zj29n5b7s9k2vj49c0pflpjcr1vbqxf64wkhpv4g6k"; depends=[BiocGenerics ChemmineR RUnit]; }; + focalCall = derive2 { name="focalCall"; version="1.21.0"; sha256="1n83rn5j0vh8fipyh9w89mm2qdxzp61hv7vcajl507yxzj5qm1ga"; depends=[CGHcall]; }; + frenchFISH = derive2 { name="frenchFISH"; version="1.0.0"; sha256="03glm61wlfd74pjh0j0lw8clkpk712a71in8hwc52fkzp3mzfg5r"; depends=[MCMCpack NHPoisson]; }; + frma = derive2 { name="frma"; version="1.40.0"; sha256="1ghyjrqafscjvbqvrmh063r0sdh2qscdmirz8ll8h56nqadk0iyy"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; + frmaTools = derive2 { name="frmaTools"; version="1.40.0"; sha256="1nzpms16rys8vr4l7wrs4qncy9n629v15ni56wkw0hwfgp8xxpzi"; depends=[affy Biobase DBI preprocessCore]; }; + funtooNorm = derive2 { name="funtooNorm"; version="1.12.0"; sha256="026c038zilkli8s45szyjywrz0p1yn7k9lpfw173r8l1n5sqk86c"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; + gCMAP = derive2 { name="gCMAP"; version="1.32.0"; sha256="04aaqa9gvv97ijgnr05drwcn637w1n1k1v9gna0zzxrbcwln36n8"; depends=[annotate AnnotationDbi bigmemory bigmemoryExtras Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; }; + gCMAPWeb = derive2 { name="gCMAPWeb"; version="1.27.0"; sha256="1361qlzq5lgj24ssb7l1pds5h0g1wzn7q2ff9f03kpl5nhlbzrwd"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; }; + gCrisprTools = derive2 { name="gCrisprTools"; version="1.16.0"; sha256="0n5zxyrfnr981r1ynlclcxh6axxmbpd3m169zf767zicmjsxxcl7"; depends=[Biobase ggplot2 limma PANTHER_db rmarkdown RobustRankAggreg SummarizedExperiment]; }; + gQTLBase = derive2 { name="gQTLBase"; version="1.20.0"; sha256="06xvzp4fn3qfa46ggg8kxi267gbyd821vvx4040173xkqxpr0g5j"; depends=[BatchJobs BBmisc BiocGenerics bit doParallel ff ffbase foreach GenomicFiles GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; }; + gQTLstats = derive2 { name="gQTLstats"; version="1.20.0"; sha256="1jjqfpjp93nmxjn757j5mzcax96bzcqdd1gr3rsdxg7ap008l2w7"; depends=[AnnotationDbi BatchJobs BBmisc beeswarm Biobase BiocGenerics doParallel dplyr erma ffbase foreach GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges ggbeeswarm ggplot2 gQTLBase HardyWeinberg Homo_sapiens IRanges limma mgcv plotly reshape2 S4Vectors shiny snpStats SummarizedExperiment VariantAnnotation]; }; + gaga = derive2 { name="gaga"; version="2.34.0"; sha256="10livlmxsdzf82rybhpqz81zdc0ndchy9z3kz62c651hc4x4pki1"; depends=[Biobase coda EBarrays mgcv]; }; + gage = derive2 { name="gage"; version="2.38.3"; sha256="1bqmvjiya1df0b3h491lp1jxahiyidvaf9n094z0sk84x5y3xh2p"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; + gaggle = derive2 { name="gaggle"; version="1.56.0"; sha256="0rsps8janjmldh6m4bigf05w36gckmr8bpkf59g6abalapl8mpcq"; depends=[graph rJava RUnit]; }; + gaia = derive2 { name="gaia"; version="2.32.0"; sha256="044ykv4annh4ksv6cl58lmia4pgdcn7c9hb8v9lcnlygiwm8qpas"; depends=[]; }; + garfield = derive2 { name="garfield"; version="1.16.0"; sha256="1kfcvlqwi0vp4q1b9x7x5vi1f30s3nzf7qrm5p8i2dk6karl9ncr"; depends=[]; }; + gcapc = derive2 { name="gcapc"; version="1.12.0"; sha256="0yqqfs0xwiimhk4ki4kz28q6vh65l0izg6lik41f387firhf3pil"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; + gcatest = derive2 { name="gcatest"; version="1.18.0"; sha256="1pzrpwx26dnz6q37d6kih6whbqrkal30skdsqr5v43ggqmcakbwa"; depends=[lfa]; }; + gcrma = derive2 { name="gcrma"; version="2.60.0"; sha256="1klbnygc1i5ac1x00bsk0rjw5h5dn6pn65fa3y9r09q47gpy1c5g"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; + gdsfmt = derive2 { name="gdsfmt"; version="1.24.1"; sha256="0ipf60wylbhvwk9q3mbnak0f1n6k7spfh90s1c1c0b47ryxsri67"; depends=[]; }; + geNetClassifier = derive2 { name="geNetClassifier"; version="1.28.0"; sha256="163fbly8yglkmwqzwksj5ss4b50sma82khc2q74qgxrd8ji9155i"; depends=[Biobase e1071 EBarrays minet]; }; + geecc = derive2 { name="geecc"; version="1.21.0"; sha256="018yfiik3x0nchhgr5lb58ycngapx300p4r0aplzv2fz43avf4yi"; depends=[gplots hypergea MASS Rcpp]; }; + gemini = derive2 { name="gemini"; version="1.2.0"; sha256="1n5h9rvwpnvibbrdy71n4irc8j41b6hizqqff8ffh4pjy5n6g1hs"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; + genArise = derive2 { name="genArise"; version="1.64.0"; sha256="03kih2334l3np25k09mnhyvjzs0l6a7nbnbgc3wwkrrds8fbncnc"; depends=[locfit tkrplot xtable]; }; + genbankr = derive2 { name="genbankr"; version="1.16.0"; sha256="0vd115ccllmzi5wr69aw46c2ny79qj76ds8qdm9bj4mrx1ayj611"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; + geneAttribution = derive2 { name="geneAttribution"; version="1.14.0"; sha256="00wz983nahkjl176g76cplwfyq8g6ww9pk70p9x89ka60wfjwhz1"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; + geneClassifiers = derive2 { name="geneClassifiers"; version="1.12.0"; sha256="1wmr0qlvsgwiy2mxqp3j9pd8dzqy0wj4gds3zw219isnb4wk6b4x"; depends=[Biobase BiocGenerics]; }; + geneRecommender = derive2 { name="geneRecommender"; version="1.60.0"; sha256="19dcsgrw9v6nvzdbm2kaf8027ahk8gavh8bsl9p8ddkw3h6hibr5"; depends=[Biobase]; }; + geneRxCluster = derive2 { name="geneRxCluster"; version="1.24.0"; sha256="0ngsxafjh6hk5k3a7cfjvv15w1nk1zws0z15ixdyd18q8fabnc30"; depends=[GenomicRanges IRanges]; }; + geneXtendeR = derive2 { name="geneXtendeR"; version="1.14.0"; sha256="18fqlql5jr34nwg2x11w9k44walbqbwrg8p85s8lb3xrigy88v2h"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; + genefilter = derive2 { name="genefilter"; version="1.70.0"; sha256="1sbbrnq6p90fri0ik6aq2zw26kasw63nyiy7xkzrj6vgyq7x258g"; depends=[annotate AnnotationDbi Biobase BiocGenerics survival]; }; + genefu = derive2 { name="genefu"; version="2.20.0"; sha256="1xgzf659yfgb1cm69bgn1pm9dz02g2gc8c8pqw19dx9l0r9andk1"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; + geneplast = derive2 { name="geneplast"; version="1.14.0"; sha256="1f4d72yyb35bjq6sycyaqg3d5lr73036jznajviqcss1xd400sbq"; depends=[ape data_table igraph snow]; }; + geneplotter = derive2 { name="geneplotter"; version="1.66.0"; sha256="1y494da1llmrvn3qm7akwgwjazvpffabi8llw3fbday14cay1br5"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; + genoCN = derive2 { name="genoCN"; version="1.40.0"; sha256="0p08bghddp96yp8p4rw2wq9zc19g0h15r7yhn21a0ks8fvsgh6f4"; depends=[]; }; + genomation = derive2 { name="genomation"; version="1.20.0"; sha256="1cy8kqwddiha5jy6nda1al956i4wncbgjkrxwijdb08cmka2sfwh"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer RUnit S4Vectors seqPattern]; }; + genomeIntervals = derive2 { name="genomeIntervals"; version="1.44.2"; sha256="0zgca09cszssx9jfbnjhs40n5phw79ifkp988cl9w2vkq3f5x9yy"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; + genomes = derive2 { name="genomes"; version="3.18.0"; sha256="1l6pqa9c7sngk01kc2j8mqdj9sq42y07zmxc4pm3q7lz94zhx1rc"; depends=[curl readr]; }; + genoset = derive2 { name="genoset"; version="1.44.0"; sha256="02yqbxzwxcb69fjqqdjlp3ll7544bbwz0lnxhdmck6z8s8sa05a6"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + genotypeeval = derive2 { name="genotypeeval"; version="1.20.0"; sha256="0i3jih541qv55kzm6cqv27h0i5ln12qnn58ima3kjfblbf2b4kdx"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; + genphen = derive2 { name="genphen"; version="1.16.0"; sha256="1snjb8i6xg6s8f3f99kpqks7cakzf847rlllp5dqgjkp828zi0z1"; depends=[Biostrings doParallel e1071 foreach ranger Rcpp rPref rstan]; }; + gep2pep = derive2 { name="gep2pep"; version="1.8.0"; sha256="1xbfhvmzqpb7mp4k21bbskrdwsqq5y2qv9knmsf00vqcld0bf5n3"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; + gespeR = derive2 { name="gespeR"; version="1.20.0"; sha256="1lgg0l3ljbmqsw97apbj1chs154iwhrpdj6wzcfhr8z7w1as7br4"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; + ggbio = derive2 { name="ggbio"; version="1.36.0"; sha256="11ggnqjq42fi2hm9xlvrrlr2xhy4kglvl1a0mycp1s4v67lxw5h5"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + ggcyto = derive2 { name="ggcyto"; version="1.16.0"; sha256="1ih6ggay7jjxnx8blc2sk95g8d40gkim145jllkk8sqwl02g44p0"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; + ggtree = derive2 { name="ggtree"; version="2.2.4"; sha256="1d1h269sxy94kmfahj8bdp5kzik811mrvl0h1fdkd5j6kbcc81s0"; depends=[ape aplot dplyr ggplot2 magrittr purrr rlang rvcheck tidyr tidytree treeio]; }; + girafe = derive2 { name="girafe"; version="1.40.0"; sha256="05wqxi2qfsfv0bdiq0p6nrk61q15mmi15kliyiww8vz7051mb1xj"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; + glmGamPoi = derive2 { name="glmGamPoi"; version="1.0.0"; sha256="08wki550jhr1d3xmkk3h01l7k41jmbyyjjfc9p22d861f81fzcvs"; depends=[beachmat DelayedArray DelayedMatrixStats HDF5Array pracma Rcpp RcppArmadillo SummarizedExperiment]; }; + glmSparseNet = derive2 { name="glmSparseNet"; version="1.6.0"; sha256="0v50y8kh5accs9iq1a7px6f50cmjh5h8zmpa14bvad05pvwj88vi"; depends=[biomaRt dplyr forcats futile_logger ggplot2 glmnet loose_rock Matrix MultiAssayExperiment readr reshape2 rlang sparsebn sparsebnUtils STRINGdb stringr SummarizedExperiment survminer]; }; + globalSeq = derive2 { name="globalSeq"; version="1.16.1"; sha256="0zlb0h3djabwrm5sszx76r55r9svavpahhnlgzf1qi2iz6a9mjc5"; depends=[]; }; + globaltest = derive2 { name="globaltest"; version="5.42.0"; sha256="0ndkpwi8dmz5kv2yzmdfx0qq00x6jismiah0xd6kh44l42k88510"; depends=[annotate AnnotationDbi Biobase survival]; }; + gmapR = derive2 { name="gmapR"; version="1.30.0"; sha256="14dda16jgpc29nm4llswz6yr47hwmndd9zg2qlz2psfbn31z5k6w"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + gmoviz = derive2 { name="gmoviz"; version="1.0.0"; sha256="1489jqx8ih2hb9915xpg9xgxkal4h5cai1zwikzqshsdd4g1z327"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; + goProfiles = derive2 { name="goProfiles"; version="1.50.0"; sha256="0kdmr4mdjjb79srljbd0lr7np14gz58fya2v21qgny4m5lpw902d"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; + goSTAG = derive2 { name="goSTAG"; version="1.12.1"; sha256="1p4rhmfc09vzywrdkzak6784y92bdfkr6jw3l4xfq6sw77wd3wml"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; + goTools = derive2 { name="goTools"; version="1.62.0"; sha256="185ydv7hajhxw0jgv5gplcx59grbv7aqypfrxx6ny422d5mb86rm"; depends=[AnnotationDbi GO_db]; }; + goseq = derive2 { name="goseq"; version="1.40.0"; sha256="1iyri4rrchzsn8p6wjxr4k30d3cqx3km5mnd9hkfm5d0s7fjzlym"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; + gpart = derive2 { name="gpart"; version="1.6.0"; sha256="1id0nyk21g4y6p0p9xiz4pw1nivb6zl2zm2mxcmdybpj0dn65cgp"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + gpls = derive2 { name="gpls"; version="1.60.0"; sha256="0w8gn4da618y4v8si9fbmzdzxnrb39f9zx6z7a9w6jal45cl283k"; depends=[]; }; + gprege = derive2 { name="gprege"; version="1.32.0"; sha256="14c1cmm4w3vawlyrw6ghn6shv4ncn08wgvgiz8cvwaf52cdf9dy8"; depends=[gptk]; }; + gpuMagic = derive2 { name="gpuMagic"; version="1.4.0"; sha256="0bagp0jscqrddbavgszmjlb8aiplarjh9p1y54pr1mjcnmqrg63d"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; + gramm4R = derive2 { name="gramm4R"; version="1.2.0"; sha256="0n7a9w19p9mjn4zhhwm3jzf0nwbjsigzd9wny8gnisippwsz8g0w"; depends=[basicTrendline DelayedArray DMwR investr minerva phyloseq psych SummarizedExperiment]; }; + graper = derive2 { name="graper"; version="1.4.0"; sha256="0z90jrjnhmv2l1nfh35mxym5dxqcdp5g34388yx712zckximjy6k"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; + graph = derive2 { name="graph"; version="1.66.0"; sha256="15v0nx9gzpszmdn5lil1s1y8qfmsirlznh56wcyqq4sxwjbyjn9g"; depends=[BiocGenerics]; }; + graphite = derive2 { name="graphite"; version="1.34.0"; sha256="0rc9cw3picz1y0lwhbzpk03ciij8kij74m15qgzh2ykla7zprb2p"; depends=[AnnotationDbi checkmate graph httr rappdirs]; }; + groHMM = derive2 { name="groHMM"; version="1.22.0"; sha256="04z9qq1xwdsaxbqhyld37w0ybvzly9pc1hcyrnwdbyjwd7n1fncb"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; + gscreend = derive2 { name="gscreend"; version="1.2.0"; sha256="1xx808k350r4hp02rngk5s8kp23by4dzhcpmc8r1y8vsf3xnyp1a"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; + gsean = derive2 { name="gsean"; version="1.8.0"; sha256="103cq1bc4iws6zhkz5vzx4qssrh138pgv03zswy0gbb08zgkbqka"; depends=[fgsea PPInfer]; }; + gtrellis = derive2 { name="gtrellis"; version="1.20.1"; sha256="1v2l7r945xx4cf9s8m19csj7716n2ayxy05adkl8zqgxk0gxzqm1"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; + gwascat = derive2 { name="gwascat"; version="2.20.1"; sha256="1cq5cmdrf0a0arr841yvkh6d8drc15p7mif1afr215l1s3y2dwd4"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors]; }; + gwasurvivr = derive2 { name="gwasurvivr"; version="1.6.0"; sha256="1jdfsyi71p5swcw7k7i478aask7r4yp71s7bjcdn779ji09vgizk"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; + h5vc = derive2 { name="h5vc"; version="2.22.0"; sha256="1f00kscfb3vkb68x5snlds7s3j2im7951vmfshxhdl3mnmasby4i"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; + hapFabia = derive2 { name="hapFabia"; version="1.30.0"; sha256="16bxlfhfv0d739g3x3zdw2j69zz5gxx50ajnnd1qja23k1ks0bxr"; depends=[Biobase fabia]; }; + heatmaps = derive2 { name="heatmaps"; version="1.12.0"; sha256="1d83yilb8v9na6a55bazn82nlrg23595b3ipgsqpqwa271f8404p"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; + hiAnnotator = derive2 { name="hiAnnotator"; version="1.22.0"; sha256="0qmmyxkk0qhqzaq6zrdlagbjg4l5lra0gra94hm9mcx1520mcc8d"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; + hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.24.0"; sha256="1r3sspacpx20nhqnbk8c5n40fpi5mprzrbcrfckpgdak7y7dnw8y"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; + hicrep = derive2 { name="hicrep"; version="1.11.0"; sha256="1zwsnnk8xwz6wz9qkllzxw10bpv435gv4xcqzdbq6871za665sdz"; depends=[]; }; + hierGWAS = derive2 { name="hierGWAS"; version="1.18.0"; sha256="1hxwc9ix97ckx6cb80zxgr3v2aq1qmpvgp17gd3cq4q912wvxjyi"; depends=[fastcluster fmsb glmnet]; }; + hierinf = derive2 { name="hierinf"; version="1.6.0"; sha256="00r8wpqqj2n0dc87pvprfp4jd31mm978jfqsb5kxn2gb6ab8i9dg"; depends=[fmsb glmnet]; }; + hipathia = derive2 { name="hipathia"; version="2.4.0"; sha256="09snfzlmpn62g2xd183cx116w6lsp0in5yhjn84phz477zv81iyp"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; + hmdbQuery = derive2 { name="hmdbQuery"; version="1.8.0"; sha256="1y6j0x532rk639kq2nk2443diccn0nb2s4m6byax67z4zqv0504g"; depends=[S4Vectors XML]; }; + hopach = derive2 { name="hopach"; version="2.48.0"; sha256="0zrpszqaz8q5wwg43v16va6x8l38rzkps9jc863sjrjccgycrzkh"; depends=[Biobase BiocGenerics cluster]; }; + hpar = derive2 { name="hpar"; version="1.30.0"; sha256="1jq0qw7wq3426cp004divywjm3ryixkykcmwlhrri13agz6rx3r9"; depends=[]; }; + hypeR = derive2 { name="hypeR"; version="1.4.0"; sha256="1fcbgima1ab3rd828b37bkj37vqgshw5xdj31q9jl2qci8s1mlns"; depends=[dplyr ggforce ggplot2 httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable rlang rmarkdown scales stringr visNetwork]; }; + hyperdraw = derive2 { name="hyperdraw"; version="1.40.0"; sha256="1qzx5sqp7rpspk8g1j34p03ds1vmw0h7hpzb2ijpbvmsja5drzvf"; depends=[graph hypergraph Rgraphviz]; }; + hypergraph = derive2 { name="hypergraph"; version="1.60.0"; sha256="1iq9b9rzy3ikx8xszsjiv3p8l702n2h2s9w33797wcmkg4apslb7"; depends=[graph]; }; + iASeq = derive2 { name="iASeq"; version="1.32.0"; sha256="0zciwpkd19z1jd7qlzmindgh25d3jzabd63b980v54kwyx1c6cmi"; depends=[]; }; + iBBiG = derive2 { name="iBBiG"; version="1.32.0"; sha256="0bbawqlarkv4zs31pji4c74m1d7qr5bdsxblzipbl9gxfrn1qyhg"; depends=[ade4 biclust xtable]; }; + iBMQ = derive2 { name="iBMQ"; version="1.28.0"; sha256="12s5kiymn52p9kfdh04bfga3bsfbkwnwpddinsbkr69klf9cwkya"; depends=[Biobase ggplot2]; }; + iCARE = derive2 { name="iCARE"; version="1.16.0"; sha256="0llikw31dl2yw7wd3p1ci9b96jybb1b3gn4pb0gqlvbz44jl12cw"; depends=[gtools Hmisc plotrix]; }; + iCNV = derive2 { name="iCNV"; version="1.8.0"; sha256="1w4kljhn4cnhjw9aqxkvvpihhbgw44gxchcb4il02nshqwqnnfnv"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; + iCOBRA = derive2 { name="iCOBRA"; version="1.16.0"; sha256="0cvklagby3i221dlhyb51cciv0b3ch4a8z0wpm67q5n6n3k0cil1"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; + iCheck = derive2 { name="iCheck"; version="1.18.0"; sha256="17yyrbz751dq35dngz613yddjgcciffrwx1ncvq8m83b7nx27nyl"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; + iChip = derive2 { name="iChip"; version="1.42.0"; sha256="0rrya0j8sfchc8rsxigax8gbx1bdwcwfmdnkbk98pkh8sxr309i4"; depends=[limma]; }; + iClusterPlus = derive2 { name="iClusterPlus"; version="1.24.0"; sha256="0j987xvxixdz0wnhgp4kgfcgz5jffrcdhmldrgpgv582qmf4r94w"; depends=[]; }; + iGC = derive2 { name="iGC"; version="1.18.0"; sha256="17hh5r2vr8y6ajvwnyhg1dx01s2qjbn70q3ix5z6ds09nii06l2v"; depends=[data_table plyr]; }; + iPAC = derive2 { name="iPAC"; version="1.32.0"; sha256="0q4qvyq3170sh5xlr78jkax1rqax2cxjpambm4niynfm91fx8jri"; depends=[Biostrings gdata multtest scatterplot3d]; }; + iSEE = derive2 { name="iSEE"; version="2.0.0"; sha256="1sbmhm9pg7rvx2wlxk2i877m7jnqxpkn5hii084jcgw5sqp9va6r"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; + iSEEu = derive2 { name="iSEEu"; version="1.0.1"; sha256="02hb578iy5bc9mmmlspcyj67nqq106br9fmz314ihj7c3cixz401"; depends=[DT ggplot2 iSEE S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; + iSeq = derive2 { name="iSeq"; version="1.40.0"; sha256="1k5fw917z94imflwz87zz0qlazsnvz2c8cka4i7l02h6nqs16yhn"; depends=[]; }; + iasva = derive2 { name="iasva"; version="1.6.0"; sha256="1fbbwz6fjw83ca9z910rv96wf4qv9v43fyxncydmn1d02fq9ck13"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; + ibh = derive2 { name="ibh"; version="1.36.0"; sha256="1wkd36673b1ksk7aph87awlpm7wwqfpa3qznkmv894nvmxhrd9r6"; depends=[simpIntLists]; }; + icetea = derive2 { name="icetea"; version="1.6.0"; sha256="0690siz5cd8qjpalyhrahqz7q5svfdyyq8hm61ygf3g5jqi1pczd"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; + ideal = derive2 { name="ideal"; version="1.12.1"; sha256="1j1ys3sizvnkv8i54gf9vbakjaj84mmb3353lpj56wl2i4qvhvfb"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; + idiogram = derive2 { name="idiogram"; version="1.64.0"; sha256="1fia0sa7xqylshk8alwkg2a9vgvgqicwss8jvplvppniyan364bh"; depends=[annotate Biobase plotrix]; }; + idr2d = derive2 { name="idr2d"; version="1.2.2"; sha256="1ycnjj4zy0k4qij7xv5i5w3jgd633nn4gxcb8n0z4kxh60117cq4"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; + igvR = derive2 { name="igvR"; version="1.8.2"; sha256="0a7xrnqz0gvr52i3y744kvn960kjknvxdyv8vd7qc8dn496f0scp"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv MotifDb RColorBrewer rtracklayer seqLogo VariantAnnotation]; }; + illuminaio = derive2 { name="illuminaio"; version="0.30.0"; sha256="0i587r1v5aa25w0jm1zvh7spc1gqmvza49i2kv00g1qzj8whq67c"; depends=[base64]; }; + imageHTS = derive2 { name="imageHTS"; version="1.38.0"; sha256="0xnwf59n9q08f2wsf3823amyw0bm936csaglcl07xwz5qcdvvplr"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; + immunoClust = derive2 { name="immunoClust"; version="1.20.1"; sha256="04hhz2f3i5gp3sinyx3x0nf539nadlwki3ix70yhxyd2i6xc0dz0"; depends=[flowCore lattice]; }; + impute = derive2 { name="impute"; version="1.62.0"; sha256="161p6l1cp3wwdynkxwvg0yhrh6yv20brdlplw5w5mavn4hf1nm0h"; depends=[]; }; + infercnv = derive2 { name="infercnv"; version="1.4.0"; sha256="0h7apzyizjjlfk47lr08b26a4j5ylq3iqj1ga76kk3q6hrg1vgrz"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov Matrix RColorBrewer reshape rjags SingleCellExperiment SummarizedExperiment tidyr]; }; + intansv = derive2 { name="intansv"; version="1.28.0"; sha256="0w5qma19jyr026s86aa5zkj6spgk5b9khb9xml1yc98jbn5wa6mf"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; + interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.26.0"; sha256="02xh10d35v3q9hrddhs28mgmm9kii85aqqzfp5pacd6snradh3c6"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; + interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.26.3"; sha256="1x5vipqa4pgwpd62c1c58shnlpv3zyzzpf4wdwr00q1swkdb7wv3"; depends=[BiocGenerics DT shiny]; }; + inveRsion = derive2 { name="inveRsion"; version="1.36.0"; sha256="1kqpp9lp89z2rqacfmxmz3201n5vy5r5h962gm5cagwl552h3ivs"; depends=[haplo_stats]; }; + ipdDb = derive2 { name="ipdDb"; version="1.6.0"; sha256="17yirg8g7yk8xn43m6d55gk30rmp5985q9kbx1glr7bi9jcgi8rl"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; + isobar = derive2 { name="isobar"; version="1.34.0"; sha256="1xbapqk82vnv7cfp1v1xilmakmsna1sm2bnhlpbgivaqjcy0slxq"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; + isomiRs = derive2 { name="isomiRs"; version="1.16.2"; sha256="0gi82ywgr394hwrniifgd8vvylrbafzf8hdrmv4jiwvwjm6ciigq"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + iterClust = derive2 { name="iterClust"; version="1.10.0"; sha256="0iql8z0d9i110pcapb12666nhnp51xhkk53j2aqyd3ligyvsdfdv"; depends=[Biobase cluster]; }; + iterativeBMA = derive2 { name="iterativeBMA"; version="1.46.0"; sha256="1znc49q81fbk76038pcdbfh71h79g9663r03f5pxcldv69apiigm"; depends=[Biobase BMA leaps]; }; + iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.46.0"; sha256="0rqkdbw6lgvny6wcbz0c9j27bvj7m6qhrlb91v41nxq0m0cvmp2a"; depends=[BMA leaps survival]; }; + iteremoval = derive2 { name="iteremoval"; version="1.8.0"; sha256="1z2d4ggnh6n5k36rh1c9s2vmnbm4kvali7fsrb13xs60947c4r4m"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; }; + ivygapSE = derive2 { name="ivygapSE"; version="1.10.0"; sha256="0fsfh8mczbv6ng79h84i9hz0awyrp69np25jv6k2krxixan58adk"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; + joda = derive2 { name="joda"; version="1.35.0"; sha256="044fhha4vrsfzz0bpa5q263lxqaz7nfb1b9hz0q870ja7j9wcmb3"; depends=[bgmm RBGL]; }; + karyoploteR = derive2 { name="karyoploteR"; version="1.14.0"; sha256="0h0gk4xd95k5phy6qcsv7j931d7gk3p24i2fg4mz5dsk110lpifs"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + kebabs = derive2 { name="kebabs"; version="1.22.0"; sha256="10jgn45dq0x1brpx6lgl2z8p6pg06ncrhi3ywasj4sjgvakil63r"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; + keggorthology = derive2 { name="keggorthology"; version="2.40.0"; sha256="1y25xmj0f99nmlgi7ff0lqsyin5vx9jshmh3k98c4znls6k3hrpx"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; + kimod = derive2 { name="kimod"; version="1.15.0"; sha256="1rrjfy4hibvzwprb4cg9q83b0rlzrbw68j5rrg1frvddgfimycz4"; depends=[Biobase cluster]; }; + kissDE = derive2 { name="kissDE"; version="1.8.0"; sha256="1ng27jd3vw0hm9zc31jvgf38l95qb5v16vjaz5mnyq5lvx2bsx9l"; depends=[aod Biobase DESeq2 doParallel DSS foreach ggplot2 gplots matrixStats]; }; + lapmix = derive2 { name="lapmix"; version="1.54.0"; sha256="0dsw8zdj9srp2iwz8qhnpp7vnhmcfrinqcgig6phh3nb2kf4fwss"; depends=[Biobase]; }; + ldblock = derive2 { name="ldblock"; version="1.18.0"; sha256="0plw00n2zfgh029ab41dnydzgv2yxrapjp770147rx9pff4dngrv"; depends=[BiocGenerics EnsDb_Hsapiens_v75 ensembldb GenomeInfoDb GenomicFiles httr Matrix Rsamtools snpStats VariantAnnotation]; }; + les = derive2 { name="les"; version="1.38.0"; sha256="08lr8baqiml95qdir3qpqh3h37q03ghwl6i9blnj27n0mrn4w47v"; depends=[boot fdrtool gplots RColorBrewer]; }; + levi = derive2 { name="levi"; version="1.6.0"; sha256="0izaym5jl95k4qy3fhpmar4ags4b8fnqmndm80zym1pdh374by6c"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 shiny shinydashboard shinyjs testthat xml2]; }; + lfa = derive2 { name="lfa"; version="1.18.0"; sha256="1rnjkyf74x7a75xqpvd1fryhpd6v060hn14ivgn56cffqrni9z71"; depends=[corpcor]; }; + limma = derive2 { name="limma"; version="3.44.3"; sha256="09fnqxx4rzq5n447aqg2l6y0idfwgz2jxz99sifxsr2q8afzbcj6"; depends=[]; }; + limmaGUI = derive2 { name="limmaGUI"; version="1.64.0"; sha256="0fpi6czna9lg411yvw3vl0wamhqbmagvqwpxa523ym09pkpqb2lj"; depends=[limma R2HTML tkrplot xtable]; }; + lionessR = derive2 { name="lionessR"; version="1.2.0"; sha256="0s43dan4v0kn24dxjqmgwmd6dd6d6rfm9ppb4r0vy9b4a3rm8jfd"; depends=[S4Vectors SummarizedExperiment]; }; + lipidr = derive2 { name="lipidr"; version="2.2.0"; sha256="0j419bc6rjayswxlrsgkly7x1qza912q8jkc3fad47wfqrjrfrnf"; depends=[data_table dplyr fgsea forcats ggplot2 limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; + lmdme = derive2 { name="lmdme"; version="1.30.0"; sha256="1p35cb8ivd7rjkq4816dj4klnm9ylkjwwymnq4fjl2sv4bg3w0da"; depends=[limma pls stemHypoxia]; }; + loci2path = derive2 { name="loci2path"; version="1.8.0"; sha256="05vs1mh3nl9jn6p01c0rf1fza1dmqxd3kpixxhi39dynk6mbxc89"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; + logicFS = derive2 { name="logicFS"; version="2.8.0"; sha256="1zzh0qnmbddwy2rkrbcch5kjli8siq2iynrx52ipyb4xdy56ij88"; depends=[LogicReg mcbiopi survival]; }; + logitT = derive2 { name="logitT"; version="1.46.0"; sha256="0n1k1dqg37hj8y7piqlwapphzq747svn52fi7ini86kvg87gwxnx"; depends=[affy]; }; + lpNet = derive2 { name="lpNet"; version="2.20.0"; sha256="10lfscn56v06i5wrr7lvrralkmlcg8jnpdc3msrr1m61y2cbvz2m"; depends=[lpSolve]; }; + lpsymphony = derive2 { name="lpsymphony"; version="1.16.0"; sha256="072ikmd267n18hrj7dip4dp1vb5dinj82p3h95n2jaf04h9hwfn4"; depends=[]; }; + lumi = derive2 { name="lumi"; version="2.40.0"; sha256="196izc4mdh8j4f04fsf8cqm99w1inzpwy34kwvhz6zvxj2ywn1i9"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; + mAPKL = derive2 { name="mAPKL"; version="1.18.0"; sha256="0892l63nrblmn80xcga46ysimgv6yind0dc2662ys7vl8wcfich6"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; + mBPCR = derive2 { name="mBPCR"; version="1.42.0"; sha256="0kzbrb83gw7w9zcjjjqp5nwfr6sk8gghlk4n1zxdzrhhq5i8mpwk"; depends=[Biobase GWASTools oligoClasses]; }; + mCSEA = derive2 { name="mCSEA"; version="1.8.0"; sha256="1gz077xgfxw2fi7xwm938d091fffqj275r4w87ixbdi5sxq9rkif"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; + maCorrPlot = derive2 { name="maCorrPlot"; version="1.58.0"; sha256="1266gq4ms9d8i7vby0i4lafdk6jpywkkjg3g6wpabadbfsqcmp65"; depends=[lattice]; }; + maPredictDSC = derive2 { name="maPredictDSC"; version="1.26.0"; sha256="0jk9ydcvkpyjizsad8m1wwaz6vg0vyd7i939b1pg4h73l8fafnjr"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; + maSigPro = derive2 { name="maSigPro"; version="1.60.0"; sha256="1yjsb4qqwvgp4l8brw15cckbnykqx8vxcsv5sma7hknhx6gza94w"; depends=[Biobase MASS mclust venn]; }; + maanova = derive2 { name="maanova"; version="1.58.0"; sha256="1vqq5y34cg27pr5ma51m60jcivcvarrz5h7j8rrb77vms08r6ad9"; depends=[Biobase]; }; + macat = derive2 { name="macat"; version="1.62.0"; sha256="1fjcp8cy0bn916bli0iy040mbhmmswlacy4pc5kcb4yji1nlj4x2"; depends=[annotate Biobase]; }; + made4 = derive2 { name="made4"; version="1.61.0"; sha256="1bm2n99rkl38y97zzg8mvb52jnf42ka0gqljzg4jphq8j97f8qj2"; depends=[ade4 gplots RColorBrewer scatterplot3d]; }; + maftools = derive2 { name="maftools"; version="2.4.05"; sha256="1wwd2n3xlqdv0yfw64hrpj443gmjyyibcfavfp7jd4ccph9g5wfd"; depends=[data_table RColorBrewer survival]; }; + maigesPack = derive2 { name="maigesPack"; version="1.52.0"; sha256="14jf4b0kcd0l9mbnrvl2c55a7pggyfj14kj1gf7mc0k34ys9q04g"; depends=[convert graph limma marray]; }; + makecdfenv = derive2 { name="makecdfenv"; version="1.64.0"; sha256="1mzsqkyyldcvf0b26j9pzwdy19n5hrsalvaw4vfhp36793f7r99v"; depends=[affy affyio Biobase zlibbioc]; }; + mapscape = derive2 { name="mapscape"; version="1.12.0"; sha256="0yzf1p9nvg7ncpadnvad50c4mrxc6isn32b3vvyfrhq0adqidykl"; depends=[base64enc htmlwidgets jsonlite stringr]; }; + marray = derive2 { name="marray"; version="1.66.0"; sha256="1sym3nis5qzg05b2in83xr019mvz8czy8qvispc0hzsq42yng6kd"; depends=[limma]; }; + martini = derive2 { name="martini"; version="1.8.0"; sha256="0qpa0l78miszjsraihv87p5s1isaamk3vibkpn95b7ab03hplz2r"; depends=[igraph Matrix Rcpp RcppEigen Rgin S4Vectors snpStats]; }; + maser = derive2 { name="maser"; version="1.6.0"; sha256="1940fgqjn5m76avh1hxp5j064hqm47335f0r939idm9qz5d2w4qa"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; + maskBAD = derive2 { name="maskBAD"; version="1.32.0"; sha256="07hxng0dm6ksp0yd1cns6vdlrv0j08lb65bxakrhdj2jsxx85133"; depends=[affy gcrma]; }; + massiR = derive2 { name="massiR"; version="1.24.0"; sha256="1ki1886i90wfd5jmjjn6nddnkaaxq81xr5jmz9l226g5xmq7xh0l"; depends=[Biobase cluster diptest gplots]; }; + matchBox = derive2 { name="matchBox"; version="1.30.0"; sha256="1mfrxp3scmfakysbyqs5i7kjw9kx2jllcz1vnb6jpdlvah7928ij"; depends=[]; }; + matter = derive2 { name="matter"; version="1.14.0"; sha256="0ys1zmfyxz7lmffa8v02qcd5lg5aypjh3lhwzyzaal4cncx16fnp"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; + mbkmeans = derive2 { name="mbkmeans"; version="1.4.0"; sha256="113s6cxvx61y75cky0y0a9q4b3zhj2qwx2d5ldvbmji3mfxh7i7x"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib SingleCellExperiment SummarizedExperiment]; }; + mcaGUI = derive2 { name="mcaGUI"; version="1.36.0"; sha256="1b7ww5vd295a5dws1qx5mzsdy95ch81svbk9xcmnjkyp5kjjmlfi"; depends=[bpca foreign lattice MASS OTUbase proto vegan]; }; + mdgsa = derive2 { name="mdgsa"; version="1.20.0"; sha256="1yv2fvjfmhvs2xdawm8clrsgasvmaiadfja606igrg0vdj4bmpwd"; depends=[AnnotationDbi cluster DBI GO_db KEGG_db Matrix]; }; + mdp = derive2 { name="mdp"; version="1.8.0"; sha256="01dwydhclszzxhd91j4jdvpn88s77bn3dyfpf36q6wx2qzjfql6h"; depends=[ggplot2 gridExtra]; }; + mdqc = derive2 { name="mdqc"; version="1.50.0"; sha256="1qycxi2vsvlar6dmc1zrbf46cffw211ciabml0ppy79xakbpkai7"; depends=[cluster MASS]; }; + meshes = derive2 { name="meshes"; version="1.14.0"; sha256="0sbncp5czfjvb1dxs6v6yb0rdbgqrfbakdwq9maynv5zhnz3mla7"; depends=[AnnotationDbi DOSE enrichplot GOSemSim MeSH_db rvcheck]; }; + meshr = derive2 { name="meshr"; version="1.24.1"; sha256="0xa78zn22n0h60nsfrkg8xl442s61ja5y6nms66mlxn84s3hkbq3"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db RSQLite S4Vectors]; }; + messina = derive2 { name="messina"; version="1.24.0"; sha256="00qxnysx66ipqgl3l1394cyhc1sphprf22ivvphyydq0qrm3ixlz"; depends=[foreach ggplot2 plyr Rcpp survival]; }; + metaArray = derive2 { name="metaArray"; version="1.66.0"; sha256="1yi7r3vxirsnfypvh96fr29fcz38gwvy3qgcam93zpzb879wzydc"; depends=[Biobase MergeMaid]; }; + metaCCA = derive2 { name="metaCCA"; version="1.16.0"; sha256="0ag07gjhnfy77m8hdw4p47cbgakdyhp3pzy8v2vhfx5g5a6l7c3y"; depends=[]; }; + metaMS = derive2 { name="metaMS"; version="1.24.0"; sha256="0hzvvhs4q418dxac7ypdf3z1rdpdh35l4dfkpkb6zgar37cr0q8g"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; + metaSeq = derive2 { name="metaSeq"; version="1.28.0"; sha256="1jmbcd2xkq2mdbx8nhs76aiwzv76kwbx46s6y51r73ghspwnmpg4"; depends=[NOISeq Rcpp snow]; }; + metabomxtr = derive2 { name="metabomxtr"; version="1.22.0"; sha256="0f9x3x4hmcf60rbgnmdb7q5nbzlfj99idpwqg8zzw8baa0rh22mx"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; + metagene = derive2 { name="metagene"; version="2.20.0"; sha256="1k1y690phxdzc7b273zfi17vl5cvvlqx6bk833gx6mkwhfpb2gsy"; depends=[BiocParallel data_table DBChIP EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats muStat purrr R6 Rsamtools rtracklayer stringr]; }; + metagene2 = derive2 { name="metagene2"; version="1.4.0"; sha256="0l6fwa040a4y1i60sr2psafjrqn40362jp9qhgznx065iy6paw72"; depends=[BiocParallel data_table DBChIP dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; + metagenomeFeatures = derive2 { name="metagenomeFeatures"; version="2.8.0"; sha256="02fpiw905d4m57wzmvhv18kllnali6l4vq2rkjl8n2ifsmn3ia8m"; depends=[ape Biobase Biostrings dbplyr DECIPHER dplyr lattice lazyeval magrittr RSQLite S4Vectors stringr]; }; + metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.30.0"; sha256="0i4d4ff01mybz2b0nyyfyarnmhdx66w2rmxj23ryrf8xi7c8amzx"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; + metahdep = derive2 { name="metahdep"; version="1.46.0"; sha256="1rv3hv9w86rgbhrcsb6pmcmlzjc1ily27p39dwzz26mq7ihr2wj9"; depends=[]; }; + metaseqR = derive2 { name="metaseqR"; version="1.28.0"; sha256="0s9x4lhvy9ndckq98mxwp289qgvkwgi8k56j1himv6w1n9a87p85"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; }; + metaseqR2 = derive2 { name="metaseqR2"; version="1.0.11"; sha256="05xzig9kqrc679qvfyxl6nh0qajmqiv2xjc2q4x9lrx4gcd8fg86"; depends=[ABSSeq baySeq Biobase BiocParallel biomaRt Biostrings corrplot DESeq DESeq2 DSS DT EDASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots heatmaply htmltools httr IRanges jsonlite limma locfit log4r magrittr NBPSeq NOISeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn zoo]; }; + metavizr = derive2 { name="metavizr"; version="1.12.0"; sha256="0k917l8wy3rshw3cx6pfnl19h8c2pzrcmy8z6c9b968xyrc84ydw"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; + methInheritSim = derive2 { name="methInheritSim"; version="1.10.0"; sha256="0fzyxvlql5f4zkyd29lamw29pvkz6n6jgfx6fl1j663jz7zlbc9s"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; + methVisual = derive2 { name="methVisual"; version="1.39.0"; sha256="0mz7b2y6hpwq1z1zy6i5ninbmrg4kvpqq90pkdpyxfvjdvccg8qn"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; }; + methimpute = derive2 { name="methimpute"; version="1.10.0"; sha256="0nxx7a0lbd40nyssc5zk75hqqwv1sp6z1ccslzv7qvfdb4w0ra2k"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; + methrix = derive2 { name="methrix"; version="1.2.06"; sha256="1pl0qdg68rq0ijr90b05kvf7qmd4sh5anx4gclgzgh6wfyp16c1q"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats ggplot2 HDF5Array matrixStats rjson SummarizedExperiment]; }; + methyAnalysis = derive2 { name="methyAnalysis"; version="1.30.0"; sha256="1ba85gwdnsakvphanidd1mcsz4w13qgy7pl39p4r2kmkk4q99pjz"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; }; + methylCC = derive2 { name="methylCC"; version="1.2.0"; sha256="05wlr1mp644fwv1yfgcgiyznd6ll4cz5xbv4psxqqjjqp550yirc"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; + methylGSA = derive2 { name="methylGSA"; version="1.6.1"; sha256="09nrf4iyvil19k7mkbjmi5d5add9dcwdgwgcqdb1mag9yzp5lkrj"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; + methylInheritance = derive2 { name="methylInheritance"; version="1.12.0"; sha256="176lc6hsaj4qvw7bw2iwqfkp8jypf4hg2kypkbyh78djiw43xidm"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; + methylKit = derive2 { name="methylKit"; version="1.14.2"; sha256="1qr13d2712ypbn96ijic2z5adr5dsd61kzscx7shw6vyj360rlm5"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; + methylMnM = derive2 { name="methylMnM"; version="1.26.0"; sha256="0wawh429q3dpnjh4498v81c3sn5981h9p4lhk2657cvs2bxzg5xx"; depends=[edgeR statmod]; }; + methylPipe = derive2 { name="methylPipe"; version="1.22.0"; sha256="02ckzniha41qwzj21l28nl7nbjywmh2ca81hf8i8f08sqn2qy6iy"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; + methylSig = derive2 { name="methylSig"; version="1.0.0"; sha256="0105zbhzhbq4qrqghchr79qzs0mwfx0bw3ccz97qyrmf23aqyr0s"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + methylumi = derive2 { name="methylumi"; version="2.34.0"; sha256="0phb2dyndnk9rv79nx246cn1sc9wbzdqqbgl6402knc7dgh799wr"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; + methyvim = derive2 { name="methyvim"; version="1.10.0"; sha256="1xy0iz2wym5hfbyi7h8y7kylrz7byx8z0lz4pzr1grmg14jiyf0l"; depends=[BiocGenerics BiocParallel bumphunter cluster doFuture dplyr future GenomeInfoDb ggplot2 ggsci gridExtra gtools IRanges limma minfi S4Vectors SummarizedExperiment superheat tmle]; }; + mfa = derive2 { name="mfa"; version="1.10.0"; sha256="1a7ss1sc1hps5vzg5a334br343hv4dgypz6rh9ads9v5zga69h4n"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; + mgsa = derive2 { name="mgsa"; version="1.36.0"; sha256="0bpylw0d7870bvgxfbgqp98d4p7m8m16k3y97n87d68ysiynza6h"; depends=[gplots]; }; + miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.12.0"; sha256="0b7n0zbbr4dhsamx6d6k5i44zcwmpbgk18z5ws9dqmrd8ihypcy8"; depends=[]; }; + miRLAB = derive2 { name="miRLAB"; version="1.18.0"; sha256="0dw1v9nncxbph0bihcdh43pszhdv1rs1ghm7yal5938m8d4awqz8"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots heatmap_plus Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl Roleswitch stringr SummarizedExperiment TCGAbiolinks]; }; + miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.16.0"; sha256="0x83bz4mg4sr3kcjb6kzigyb4w5r3571y0whd77a57baw4n3ywr0"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; + miRNApath = derive2 { name="miRNApath"; version="1.48.0"; sha256="0r0s1hcq5wqlv0gpizh0abjqnk93fpii1hj4y128qd6fcgf1pkgf"; depends=[]; }; + miRNAtap = derive2 { name="miRNAtap"; version="1.22.0"; sha256="1bxllfl9nc7hfzc996jlri6sqnydm1hyg1awc253vvxyccvinbn0"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; + miRSM = derive2 { name="miRSM"; version="1.6.0"; sha256="1n86a4mqkmcb8x3rf5r8dv6lw0iqixgfp8wxraa1dr0syp43rj3g"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic runibic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; + miRcomp = derive2 { name="miRcomp"; version="1.18.0"; sha256="1n5n1sp204a7rzdi3wbmqk2wp997s33kfkijg9i5qzrfj041ndyz"; depends=[Biobase KernSmooth miRcompData]; }; + miRmine = derive2 { name="miRmine"; version="1.10.0"; sha256="1fllcmq5vb0fx4yxyrxwzflh5sy5yla8x4h12lb5vhy252c08y3b"; depends=[SummarizedExperiment]; }; + miRspongeR = derive2 { name="miRspongeR"; version="1.14.0"; sha256="074w9bchvj4il92zdm39agr3l83flizl82x2gcqqnmmj7phcsv8v"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA survival varhandle]; }; + microRNA = derive2 { name="microRNA"; version="1.46.0"; sha256="0z8phsya4chrj0sicxiakl4617d005ih0bfdmm4sz9l86is5q4mm"; depends=[Biostrings]; }; + microbiome = derive2 { name="microbiome"; version="1.10.0"; sha256="1gcpxb7rlm8y6354j4qbpvxkvf0h1qbxll3s2nszpfpq1li512jj"; depends=[dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; + microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.2.0"; sha256="1ylmjwgmwx5qri75wacmfckz1xs6ixplfyhk5bsk124j76i73hag"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; + mimager = derive2 { name="mimager"; version="1.12.0"; sha256="12sm7c1xkf6rlhwgs34y88l62n5wbnr6z0mgfq8jlfq5haip4561"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; + minet = derive2 { name="minet"; version="3.46.0"; sha256="1nfsr5zclpsma72047j35vkzf51g09gs4ffz8gw8vv38w0gwqwsj"; depends=[infotheo]; }; + minfi = derive2 { name="minfi"; version="1.34.0"; sha256="0bl1sk9syy770d5wqa0k1y0wrs5x8sbj13px1v03v3693pdj081w"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; + mirIntegrator = derive2 { name="mirIntegrator"; version="1.18.0"; sha256="11k73fabgnzj3b50xxhccqn850gid2d8bkns272yhpi2qj0ip8cx"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; + missMethyl = derive2 { name="missMethyl"; version="1.22.0"; sha256="0h5m45v0s23a17b8glr5x2pmaz79znillnca7zdr7fvs0da3xdxg"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; + missRows = derive2 { name="missRows"; version="1.8.0"; sha256="031ahbgpb4808wb6rr3qvaxq2gn3am28kjxcndlwpcwmhd55dpaq"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; + mitch = derive2 { name="mitch"; version="1.0.8"; sha256="0ym4jpvyxivh82wsf48799am9xcppxnd18xgka7h9v3w1vv3l199"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS pbmcapply plyr reshape2 rmarkdown]; }; + mitoODE = derive2 { name="mitoODE"; version="1.26.1"; sha256="1iskvlg811dfpzcr6xskw73piwf2ga3wv3c17hgppc66zygc6z3f"; depends=[KernSmooth MASS minpack_lm mitoODEdata]; }; + mixOmics = derive2 { name="mixOmics"; version="6.12.1"; sha256="13kq9l5xwhwp30y5gfqfh5f11n63vn8rk195mb2y2mww4cwi6lv4"; depends=[corpcor dplyr ellipse ggplot2 gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; + mnem = derive2 { name="mnem"; version="1.4.1"; sha256="1nq01w5kzd1w065k4iwnr6badk2gwmgby1zqn9c2fh74hcsr32d8"; depends=[cluster data_table e1071 flexclust graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne]; }; + mogsa = derive2 { name="mogsa"; version="1.22.1"; sha256="0gzi0j6cx6scb3gcc8xgv117yzma79cgllyklss8wrb97l1w8nvz"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; + monocle = derive2 { name="monocle"; version="2.16.0"; sha256="1vziidavlyhixmx6j7lf29qx8xcjwrc9q3x2f63gcff41q3jf9xd"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree densityClust dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; + mosaics = derive2 { name="mosaics"; version="2.26.0"; sha256="1n5s8j7v1l619msnxfg88rpkgm2kcldm4y1v491h1bnxw336gyjn"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; + motifRG = derive2 { name="motifRG"; version="1.31.0"; sha256="1ml6zyzlk8yjbnfhga2qnw8nl43rankvka0kc1yljxr2b66aqbhn"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 IRanges seqLogo XVector]; }; + motifStack = derive2 { name="motifStack"; version="1.32.1"; sha256="02vmkgn36n5xpmizy33znlzgmi3w5hnhsibgisbnhwwgxpkrwpcd"; depends=[ade4 Biostrings ggplot2 grImport2 htmlwidgets MotIV scales XML]; }; + motifbreakR = derive2 { name="motifbreakR"; version="2.2.0"; sha256="09czgmyjcycsvyvadpjddwwvqvxzd0ba3zhczh4mqc09gwa6vhlm"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; + motifcounter = derive2 { name="motifcounter"; version="1.12.0"; sha256="082hc9g08qsc659wcq8kazaghd9japichvdb6821cfm2vwafc93a"; depends=[Biostrings]; }; + motifmatchr = derive2 { name="motifmatchr"; version="1.10.0"; sha256="145d9nykhzaf9kr30iq38c9yyv2pn459b7q4ypfmgi1g302lxfxz"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; + mpra = derive2 { name="mpra"; version="1.10.0"; sha256="1p12skbhgi4r1xcmg0fbf7696y9694r1ih95pi85xv5vjqwp1jx0"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; + msPurity = derive2 { name="msPurity"; version="1.14.0"; sha256="0r59bv8bj4165vnwdck51fyz544krwchzf5hx9fk0sbjbgzmm4hs"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 jsonlite magrittr mzR plyr Rcpp reshape2 RSQLite stringr uuid]; }; + msa = derive2 { name="msa"; version="1.20.0"; sha256="1dq75smsh5jhz95azi7xzmcnpqwhc06g0ncmpg84dyjvs5wsigcq"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; + msgbsR = derive2 { name="msgbsR"; version="1.12.0"; sha256="0v86y2ivzy0b4zrwcmy0vagnqms2735r552a6z1md2hx6lh9k2qi"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; + msmsEDA = derive2 { name="msmsEDA"; version="1.26.0"; sha256="02fm1z9fidmhkkhijxmjzhzl2kmahif24gcllhfjc2g191kbwns2"; depends=[gplots MASS MSnbase RColorBrewer]; }; + msmsTests = derive2 { name="msmsTests"; version="1.26.0"; sha256="0vg8523kwc3xals6ghja6z2rdcc0q8nzdh2h2637b6clkbs0g1cy"; depends=[edgeR msmsEDA MSnbase qvalue]; }; + multiClust = derive2 { name="multiClust"; version="1.18.0"; sha256="0sgjdv2m7za4whd4f13nl8acpag7j4v63zchljva6wp0j5xhgnx4"; depends=[amap cluster ctc dendextend mclust survival]; }; + multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.6.0"; sha256="0zpzi2lrbbpij8q11h4bs9dqshqkb2fgdf0pdvhqygvxvxva3bw9"; depends=[BiocParallel BLMA data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare metap pbapply pheatmap qqman]; }; + multiMiR = derive2 { name="multiMiR"; version="1.10.0"; sha256="1x9pl8f0lb6ihvl2b4p6h9p1r4m212cg0722apzavqm2m4w51kfk"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; + multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.12.0"; sha256="05g3dp37sg7sdn2qlvx9sa4d1yvhacqh47f9anp0wpzwypxifxfx"; depends=[doParallel foreach SummarizedExperiment]; }; + multiscan = derive2 { name="multiscan"; version="1.48.0"; sha256="0ai9bj0xpakkfk3yndrllmqnkiskfymsq9kq2pwdsblsmsgi2yw3"; depends=[Biobase]; }; + multtest = derive2 { name="multtest"; version="2.44.0"; sha256="12li7nzzygm3sjfx472095irqpawixk48d0k591wlnrms6sxchx2"; depends=[Biobase BiocGenerics MASS survival]; }; + muscat = derive2 { name="muscat"; version="1.2.1"; sha256="1vwc71jf8li9g4qbfgii7dwj24hmaav2ww4zkjabkxd7icmwph4z"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; + muscle = derive2 { name="muscle"; version="3.30.0"; sha256="1j0x29ahh6981b8r96k3659kyrzly3666jwx6gplrb7xfiixirf4"; depends=[Biostrings]; }; + mygene = derive2 { name="mygene"; version="1.24.0"; sha256="1cc6x81i79pi61npvrlhwl84jhnzzbc94hajqrylipnni2y60n62"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; + myvariant = derive2 { name="myvariant"; version="1.18.0"; sha256="1m2cc1p2sf7pqrqws1vmybmb6f4adxdy1aba063c854p7c22gmkp"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; + mzID = derive2 { name="mzID"; version="1.26.0"; sha256="0y50lzkdamkpz67f6r5whp246qsxpbammjil7g8vjprx0c4jk5n5"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; + mzR = derive2 { name="mzR"; version="2.22.0"; sha256="1r8j8yiz5lcan7j4h37sza2kwczl48dxvld3da3ghjjq67cdc2cm"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib zlibbioc]; }; + nanotatoR = derive2 { name="nanotatoR"; version="1.4.0"; sha256="12ydir5ikxjb2sqgnjapb1gb1wn1d66iiis3s0fxsqkp1nkfid0c"; depends=[AnnotationDbi hash httr knitr openxlsx org_Hs_eg_db rentrez rtracklayer stringr testthat]; }; + ncGTW = derive2 { name="ncGTW"; version="1.2.0"; sha256="19qlxpwc0ir5bvwnls8k87lv7mrp8aa1kly627vy8326na9f8la9"; depends=[BiocParallel Rcpp xcms]; }; + ncdfFlow = derive2 { name="ncdfFlow"; version="2.34.0"; sha256="0avxn2abh4fk1gkncrxz7jwzgvd90m3m0ly318q0z38cjhsw3j9f"; depends=[BH Biobase BiocGenerics flowCore Rcpp RcppArmadillo Rhdf5lib zlibbioc]; }; + ndexr = derive2 { name="ndexr"; version="1.10.0"; sha256="11zzh4p9gj5srkmv5gx563s58q0n9hs84pw5szb6xs5jkfx85jy9"; depends=[httr igraph jsonlite plyr tidyr]; }; + netDx = derive2 { name="netDx"; version="1.0.3"; sha256="0zl3fjgl88lgkn4bb3dz8mhaz1cl31mjhpiklh99p972idi3mk6q"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet igraph IRanges MultiAssayExperiment pracma rappdirs RColorBrewer RCy3 reshape2 ROCR S4Vectors]; }; + netReg = derive2 { name="netReg"; version="1.11.0"; sha256="08caaspcjgmczawmp5ng6xl5lsp1nbwc72mww69isx9bnx25vn21"; depends=[Rcpp RcppArmadillo]; }; + netSmooth = derive2 { name="netSmooth"; version="1.8.0"; sha256="13ypki31mq03kxg30hcpj2p5nf5fjhr779mfyynx9dzzm6jq9kf4"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; + netbenchmark = derive2 { name="netbenchmark"; version="1.19.0"; sha256="13ni8hi5n4arp5p12ximw04my79vckadjamadxj63rlmkknff6sp"; depends=[c3net corpcor fdrtool GeneNet GENIE3 grndata Matrix minet pracma Rcpp]; }; + netbiov = derive2 { name="netbiov"; version="1.22.0"; sha256="03c2v8ihlrk6v0wqkdy047p6nf7iwaal4s0mm5l4hcjihalsg1pl"; depends=[igraph]; }; + netboost = derive2 { name="netboost"; version="1.4.0"; sha256="190zwyfadlqz162qp08dbrvnznm5p1zbfjm8xm8p510jmsb2fxkl"; depends=[colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; + netboxr = derive2 { name="netboxr"; version="1.0.0"; sha256="1ljl61dy5wx5rm2zw8s2da69x23sp63wf4c5s79jg6khywmbsi6c"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr]; }; + nethet = derive2 { name="nethet"; version="1.20.0"; sha256="0d96nmyzihzhv8vg81hmdspz2cj6pc7gib3z7r810fzab8mfgivd"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; + netprioR = derive2 { name="netprioR"; version="1.14.0"; sha256="0qwbz1pjyppwvf5sfd14n9q5w2hpn8ns5pdgl16fj1w1y3nnih2q"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; + netresponse = derive2 { name="netresponse"; version="1.48.0"; sha256="0sdly4lba4yyqxqdkx45zvj2p3179llkkf65i62wp9p01pc0xgpa"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz]; }; + networkBMA = derive2 { name="networkBMA"; version="2.28.0"; sha256="0pymqhmrwmbkdvjaf0wk6wqgv3lbkmsw6g21nqm6vjvilf2rgcl9"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; }; + ngsReports = derive2 { name="ngsReports"; version="1.4.2"; sha256="11jkp6dgrbmma5c0cpa0gnjmpm2xix83wkmq8hpfyqkc9zwrc7w0"; depends=[BiocGenerics Biostrings checkmate dplyr DT FactoMineR forcats ggdendro ggplot2 lubridate pander plotly readr reshape2 rmarkdown Rsamtools scales ShortRead stringr tibble tidyr tidyselect truncnorm viridisLite XVector zoo]; }; + nnNorm = derive2 { name="nnNorm"; version="2.52.0"; sha256="1qd5ygnmnh0bimzlxz587dzm67vhy9yb1ayyyqbc46p2bz1h3bzf"; depends=[marray nnet]; }; + nondetects = derive2 { name="nondetects"; version="2.18.0"; sha256="1v24r3dglfj7zy15h7fn22g0jh98xmiqs0kicriapf2s3qbgqdk9"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; + normalize450K = derive2 { name="normalize450K"; version="1.16.0"; sha256="00yrx8pbyk6rinbjaz78xbkaqaakqwjv5njsnjjk5p4b5x4av49z"; depends=[Biobase illuminaio quadprog]; }; + normr = derive2 { name="normr"; version="1.14.0"; sha256="03zxwhk450qpq0svmpm9gxq234j8rvavfm1hysifm39hjbg67hwj"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; + npGSEA = derive2 { name="npGSEA"; version="1.24.0"; sha256="1xb0r4l85g0rgkvq9hgdsagx7iv987fbx666l9f38cjg6d8904x0"; depends=[Biobase BiocGenerics GSEABase]; }; + nuCpos = derive2 { name="nuCpos"; version="1.6.0"; sha256="1v5k0x463ln8y74zbs4hpqjk6sk5sav6fd0nxhih1nd2qryb8z12"; depends=[]; }; + nucleR = derive2 { name="nucleR"; version="2.20.0"; sha256="1x5myzzbb0nh69fpfxkjrdr8l95x7hw6yc0rbysv7g9x74xqyi30"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; + nucleoSim = derive2 { name="nucleoSim"; version="1.16.0"; sha256="0gfkz0c7ifldzjp2lf12ma39lisjg97m8vrwk6dcff03pkkjl39i"; depends=[IRanges S4Vectors]; }; + occugene = derive2 { name="occugene"; version="1.48.0"; sha256="0db8qq19nmin6bw4wwvq1nmrr6wimi53d1pvwchln4q3kp3bkslb"; depends=[]; }; + odseq = derive2 { name="odseq"; version="1.16.0"; sha256="0pf7ij74zms0l3zrh0mjfx4ahjyym1sf06lzh9s6v7mrn5h2rclz"; depends=[kebabs mclust msa]; }; + oligo = derive2 { name="oligo"; version="1.52.1"; sha256="1gpvr33pwzz1glzajcipvjcplb7yxvjj00q0ybqcc3wa47bhfkwd"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; + oligoClasses = derive2 { name="oligoClasses"; version="1.50.4"; sha256="1d8c3i8v8kcm1afgpz6zc1iysip7993y8456cqxl37f7n6n0ax67"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; + omicRexposome = derive2 { name="omicRexposome"; version="1.10.0"; sha256="0s552v7a5p7l9nv9hfzm1094mv5ayqky0bnky53b19mkkr64pc4w"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; + omicade4 = derive2 { name="omicade4"; version="1.28.2"; sha256="1fgrjxg876bb2ajcdvkzr1w8pawaxs3y2qcf0yra7wi96hylvz1n"; depends=[ade4 made4]; }; + omicplotR = derive2 { name="omicplotR"; version="1.8.0"; sha256="00xa2d2hlcv4wkbd9n1cpvi4mk7rw5yq1rjzk37qzcrhd2z631c2"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; + omicsPrint = derive2 { name="omicsPrint"; version="1.8.0"; sha256="0snblm6f6q9jmcg45rwywcbcqiq492fs7fdc82v5wbvkbhyp93ba"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; + oncomix = derive2 { name="oncomix"; version="1.10.0"; sha256="0hxbagxra2630yjl858prlijgcyq1v4qz7aq0b78vrwpcrnv5rqj"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; + oneSENSE = derive2 { name="oneSENSE"; version="1.10.0"; sha256="0zd6xwrggsc4p66f8dm387mlpwficxa8zl880xprkqsia74g7m2k"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; + onlineFDR = derive2 { name="onlineFDR"; version="1.6.0"; sha256="1laqprlxbfy8lfdcihsbqvwzi5gwvgwz5d7ihri77nvddild9swr"; depends=[]; }; + ontoProc = derive2 { name="ontoProc"; version="1.10.0"; sha256="1iwq1wi1qnq10594hdd9pkhc4srzwvsw0fk7mzfaygjzg9ppd369"; depends=[AnnotationDbi Biobase dplyr DT graph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny]; }; + openCyto = derive2 { name="openCyto"; version="2.0.0"; sha256="10dyd6dddskv70vhpwfbsqdb8pb9i3ka0fgvl1h51wqlckbsj89m"; depends=[Biobase BiocGenerics clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; + openPrimeR = derive2 { name="openPrimeR"; version="1.10.4"; sha256="1hv2q37s6f1ns17jhcqnlwk2arqd2ikwy4ncp3fbzc3xwlqc7qwb"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; + openPrimeRui = derive2 { name="openPrimeRui"; version="1.10.0"; sha256="0vx3fba6faczqv3m5zaw53md9d6j0sm0c2n4w5gr5skyyhqfwpy6"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; + oposSOM = derive2 { name="oposSOM"; version="2.6.0"; sha256="1dickvmach4vm3553l4xxkgbmbn7pjvafcsg0bpf6b03w1nb5rdg"; depends=[ape Biobase biomaRt fastICA fdrtool igraph pixmap Rcpp RcppParallel scatterplot3d tsne]; }; + oppar = derive2 { name="oppar"; version="1.16.0"; sha256="0k8r8a11x4ckjc14fxy84jw9dn2kj2k9m1x1wpbs4hzfj013yk9q"; depends=[Biobase GSEABase GSVA]; }; + oppti = derive2 { name="oppti"; version="1.2.0"; sha256="0v8mrdz1li7g1g827h0m4gbhpxmz1qffhpczmyw7pxd6467c15yp"; depends=[devtools ggplot2 knitr limma pheatmap RColorBrewer reshape]; }; + optimalFlow = derive2 { name="optimalFlow"; version="1.0.0"; sha256="072mqa8lhihzd238qy7zqv4fsrcd0v5affhr7wsdx8xp1gsikx9f"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; + pRoloc = derive2 { name="pRoloc"; version="1.28.0"; sha256="0g2ji5cx3wxvni2rf2y1np7fha4yvcx6rzg2arkrhsgqnh731kv4"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; + pRolocGUI = derive2 { name="pRolocGUI"; version="1.22.0"; sha256="1c22zfkk8ww4h79mfwig5x177gnqb73y136d5vjjylgpxvrsd20a"; depends=[Biobase dplyr DT ggplot2 MSnbase pRoloc scales shiny]; }; + packFinder = derive2 { name="packFinder"; version="1.0.0"; sha256="1zd991v8ni6qid2prd2i8yqnzcp9v008c7x8xah77ci9aslq8wzn"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; + paircompviz = derive2 { name="paircompviz"; version="1.26.0"; sha256="0zbzxl0y74v8wphza2z1yj7la0y377bkfh6lkq1hhnl852gpyb8g"; depends=[Rgraphviz]; }; + pandaR = derive2 { name="pandaR"; version="1.20.0"; sha256="1zz2izp2c799bxsmij4l1ax6d407r0dxv9w3vsfcfps1lyn2riz9"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; + panelcn_mops = derive2 { name="panelcn.mops"; version="1.10.0"; sha256="1wbx9i6720arik9lylv6nahrp94y85127ad4iabjqqj6z0xhqklf"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + panp = derive2 { name="panp"; version="1.58.0"; sha256="1ylp241hfrv0gnma993b7dn8hmgqxa8fv8mhb8qrbyk2r1mgja3w"; depends=[affy Biobase]; }; + parglms = derive2 { name="parglms"; version="1.20.0"; sha256="1866xpmvx6gnvdcbm8j1w7rjvvyz3ahiji7rahv50qydr7cakwg0"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; + parody = derive2 { name="parody"; version="1.46.0"; sha256="1crk1vdpn97q6gq0w7yx9xczf1wcqifdvqj6aqmllcqm0sihq9sx"; depends=[]; }; + pathRender = derive2 { name="pathRender"; version="1.56.0"; sha256="0s1iknyis8564dmi3ylrx8z7by2qc5rl9ha1pmg1jjsvc42ralwk"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; + pathVar = derive2 { name="pathVar"; version="1.18.0"; sha256="0yx1g7qxn6zwv7dzsqd3b0v1mda8ivikvdwsyc4m6xzchc3wpzs2"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; + pathifier = derive2 { name="pathifier"; version="1.26.0"; sha256="1ss4ix86rpzgjsw6xz0hshax3295n5rsjgyvr083syi8zjxwr9gm"; depends=[princurve R_oo]; }; + pathprint = derive2 { name="pathprint"; version="1.17.0"; sha256="1w6h8625smr78lbn128hjvganzpg6cwypf6g599apxd5dzwpr4pf"; depends=[]; }; + pathview = derive2 { name="pathview"; version="1.28.1"; sha256="04pv8lcxfpihhmrwczxc7ndv7a1bhlaxck7lyp9z0j0qa9jj7zxj"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; + pathwayPCA = derive2 { name="pathwayPCA"; version="1.4.0"; sha256="1g32jd02lh2vzq94hhwbc0gq04sw8n4jrl4xvi1w1ydzz04f3vzc"; depends=[lars survival]; }; + paxtoolsr = derive2 { name="paxtoolsr"; version="1.22.0"; sha256="0z3hycswsqw6ny0hr94jfsrljgx6k52llfzdxh2ifrlnjp722xky"; depends=[httr igraph jsonlite plyr R_utils readr rJava rjson XML]; }; + pcaExplorer = derive2 { name="pcaExplorer"; version="2.14.2"; sha256="0ibjnzdwsbnvvia3cppwkdhl4ads5i9azpbp1bnvl445iixz2dfm"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; + pcaMethods = derive2 { name="pcaMethods"; version="1.80.0"; sha256="10cww4jxyynkwxbbsx804nwac31j0hh8dgisygld0q663gaxkgni"; depends=[Biobase BiocGenerics MASS Rcpp]; }; + pcot2 = derive2 { name="pcot2"; version="1.56.0"; sha256="101jxhdmr2gvkq2r0s2c3qvjnfqdnrk7nn2xzm71z2ysmmvbdqjv"; depends=[amap Biobase]; }; + pcxn = derive2 { name="pcxn"; version="2.10.0"; sha256="0r8fpdn0i5ds8g7y63hyq8b6as7dvvkdqsqi97jwr206bng4hz47"; depends=[pcxnData pheatmap]; }; + pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.52.0"; sha256="0w8ajj8rrzqcf6ri65l6l48y8hkxk92sd6bxssyi0dwfjl9x304n"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + peakPantheR = derive2 { name="peakPantheR"; version="1.2.0"; sha256="0536xlvc0xb4fqhgyn2js6rmdllci6rqbzdc9s3bbk4xwcp171qv"; depends=[doParallel foreach ggplot2 gridExtra minpack_lm MSnbase mzR scales stringr XML]; }; + peco = derive2 { name="peco"; version="1.0.0"; sha256="1g1z7dxz22z4i3l3dh20a1l2x58pk1plcain22dq68nrfxvr51ns"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; + pepStat = derive2 { name="pepStat"; version="1.22.0"; sha256="1nqypcv1qxpz39hanig3dy4f80nykn28zix8j20dxrs7mj5l3npa"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; + pepXMLTab = derive2 { name="pepXMLTab"; version="1.22.0"; sha256="0pqkfp6plvs3wbvlgmkjnawlgng98122z2kjpvbr8s3q6f08hsk6"; depends=[XML]; }; + perturbatr = derive2 { name="perturbatr"; version="1.8.0"; sha256="1kf4f3zj7qsxjl01vbb4z57350gp0mq36xs57i2gnbsdcbcnwldz"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; }; + pgca = derive2 { name="pgca"; version="1.12.0"; sha256="0r2xprbbqgcrsp3gidsalnkxabr8vww880wp1z8vzbj977kqbm60"; depends=[]; }; + phantasus = derive2 { name="phantasus"; version="1.8.0"; sha256="0gg9ppd6xph0amyb0lxvpc4yr8zi8h3is9ns4mvvspz6r1h4rycp"; depends=[AnnotationDbi assertthat Biobase ccaPP DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; + phemd = derive2 { name="phemd"; version="1.4.0"; sha256="176hb1i70jmg03dv942dra88v8ywd22vcihp4imz2awya9gah96s"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; }; + phenoTest = derive2 { name="phenoTest"; version="1.36.0"; sha256="12r71rmpk9wr1xyjp533mqk9dg385xy9k81lqxig2gxw7c7zzjbs"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; + phenopath = derive2 { name="phenopath"; version="1.12.0"; sha256="0ccdds0ir4b5farniva5gkr6i52km3hda1xkfi9179vlravlg44c"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; + philr = derive2 { name="philr"; version="1.14.0"; sha256="1a0blg0a3x23cj1zbkyfa8jyl8vvihmn45s56vkfgxy0lf1yz7gi"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; + phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.12.0"; sha256="0dw93ac9arb44cs4098s3x784gy6wy9x53yqyk1znhsy36cq4hw5"; depends=[matrixStats plyr]; }; + phyloseq = derive2 { name="phyloseq"; version="1.32.0"; sha256="0j7vhl6wbdigi2b0n01ynwjbzknqna9zaiwbpbsx9vvilfp35vgf"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; + piano = derive2 { name="piano"; version="2.4.0"; sha256="0ky8xr5skini6fnshf0hgvpsvqjg8nszb39dxggw7fzfnlbhd1dk"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; + pickgene = derive2 { name="pickgene"; version="1.60.0"; sha256="159zzby0xg12p7w7iiq5zfpxbgy0z053qf9w0951ja446lchvnaz"; depends=[MASS]; }; + pipeFrame = derive2 { name="pipeFrame"; version="1.4.0"; sha256="08c8q0y5nm4ayw82jbg9hrzgk2nymiy79qyrk16pdhy7bfc6f5r6"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr visNetwork]; }; + pkgDepTools = derive2 { name="pkgDepTools"; version="1.54.0"; sha256="1pg9i1m2h4lb95xdrq6snnbgiy0pyw37hpq3p9wwki9msrqagzyi"; depends=[graph RBGL]; }; + plethy = derive2 { name="plethy"; version="1.26.0"; sha256="1s27jx7nkpyin0mcjv2rxylfwixbdpykf7jgy9i4s41a3fqgv2gb"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; + plgem = derive2 { name="plgem"; version="1.60.0"; sha256="1fs5nbjnrm7x23y7d9krq56r1kzxka40ca1rs6sq70mn6syhj90a"; depends=[Biobase MASS]; }; + plier = derive2 { name="plier"; version="1.58.0"; sha256="0qw148ac0jm7k7bd2h9dpxl0n23h6343rwyqnbc5ram7xdmxknkn"; depends=[affy Biobase]; }; + plotGrouper = derive2 { name="plotGrouper"; version="1.6.0"; sha256="1xff519p1gavb4a3acwld75j7vv3b8q2phz2gi2ca4agcch9qbz3"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; + plrs = derive2 { name="plrs"; version="1.27.0"; sha256="00dpkcmiy6pam66cmvhggnq87x154q0y5cb6sgzmldix3n13rb41"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; }; + plw = derive2 { name="plw"; version="1.47.0"; sha256="0ma5nlij7bhi8jlvg87v76jwk1n5ggcd1z0b9l5pi8xzz4ngsj88"; depends=[affy MASS]; }; + plyranges = derive2 { name="plyranges"; version="1.8.0"; sha256="1inndy1fhawb1qplk3xfb9b93fm9xpd3xajd22m4n1iyf9l3drv4"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; + pmm = derive2 { name="pmm"; version="1.20.0"; sha256="1jsa9rblzdacm35gw6sxhs9jkcsrlkv5ajkdi8a09sjgx9pva0r2"; depends=[lme4]; }; + pmp = derive2 { name="pmp"; version="1.0.0"; sha256="1n5jm9mw95bai4vv1r0nb6p67adjkm732kj05mhqli6bb43998pv"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; + podkat = derive2 { name="podkat"; version="1.20.0"; sha256="1iw4v4sivkma8gswhnlk5311m0j79maixh2zakd5h1h3g9zpvrxk"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; + pogos = derive2 { name="pogos"; version="1.8.0"; sha256="10d1lqdn93pnj66hzy9gch290q84b1cclhfd20yljvpy58ca5z4n"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; + polyester = derive2 { name="polyester"; version="1.24.0"; sha256="1l9gzycrdzdsiz2wlknr58yr4y0727kp4d62hrdn3c44zpq0vnd1"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; + powerTCR = derive2 { name="powerTCR"; version="1.8.0"; sha256="04cskpws1jxljnls986kkrihz6nbj77vmyapj34gdm6axbd2xapa"; depends=[cubature doParallel evmix foreach magrittr purrr tcR truncdist vegan VGAM]; }; + ppiStats = derive2 { name="ppiStats"; version="1.54.0"; sha256="1lirbzqpwsyyzbbz9cv2w7114np4gblwqhi7g0hn131ga8zglw9a"; depends=[Biobase Category graph lattice ppiData RColorBrewer ScISI]; }; + pqsfinder = derive2 { name="pqsfinder"; version="2.4.0"; sha256="0yhl9zn70xnqipfsnl5qgzk94y24vvfwxlr4ifq6ajgglxr714ir"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; + prada = derive2 { name="prada"; version="1.63.0"; sha256="11vximc6r4swc98bqk309xi244k0kfk9a1706rfs4gvdmr1bd4xb"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; }; + pram = derive2 { name="pram"; version="1.4.0"; sha256="0brbfksh3hycvg9w5ghgx12gmwrf1byf1yfa2kx64wz4fbcb9whn"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + prebs = derive2 { name="prebs"; version="1.28.0"; sha256="107pap3lmc9xm5c5n2gccf948vx31ws2azbp5k34w1vf1vrzmwkr"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; + predictionet = derive2 { name="predictionet"; version="1.34.0"; sha256="183kdzr12vgv118c4r14sk21chdirq5ynpp5k2pw7q7kgrpg20ix"; depends=[catnet igraph MASS penalized RBGL]; }; + preprocessCore = derive2 { name="preprocessCore"; version="1.50.0"; sha256="0q1406kswylc8zn5k3wyd34p34pfzbhi1ggkfsh30zcjp6adbwjl"; depends=[]; }; + primirTSS = derive2 { name="primirTSS"; version="1.6.1"; sha256="1dvniz8jz332zbwld1ranbjvpl2ni2bdk3xidq3nr4nsx9hxz4x1"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; + proBAMr = derive2 { name="proBAMr"; version="1.22.0"; sha256="0gqsx7r7mxrspy0m9kl2x8m50cawhdpdh6prlryrl1q60fdkwh5g"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; + proBatch = derive2 { name="proBatch"; version="1.4.0"; sha256="0708yxljs298jv7p0rhny57i9jm2dfvaxq61a0d7pipfba1d1i0i"; depends=[Biobase corrplot data_table dplyr ggfortify ggplot2 lazyeval lubridate magrittr pheatmap preprocessCore purrr pvca RColorBrewer reshape2 rlang scales sva tibble tidyr viridis wesanderson WGCNA]; }; + proDA = derive2 { name="proDA"; version="1.2.0"; sha256="02nzn7s7sglg4i9pg7fbwp20r7y1blhy19i95rcarcam5pi7zbbw"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; + proFIA = derive2 { name="proFIA"; version="1.14.0"; sha256="179qwyvfx4445hmzc9gcc9a7zd43rnh2zgbw575swihdpp9psk7s"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; + procoil = derive2 { name="procoil"; version="2.16.0"; sha256="1h07cdx0n2g82rd4bad27agyvh0xf1k47nsfsyg7k9lsazpp04ib"; depends=[Biostrings kebabs S4Vectors]; }; + profileScoreDist = derive2 { name="profileScoreDist"; version="1.16.0"; sha256="102w047mxwa94x3zamybqiigbwp6av5qxlvgqwnlri68z6bwm2x6"; depends=[BiocGenerics Rcpp]; }; + profileplyr = derive2 { name="profileplyr"; version="1.4.3"; sha256="05qsb567vss0wzcc48lmz4yw4zqv14nsx3d1m95n1dzazw8rqjlz"; depends=[BiocGenerics BiocParallel ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rtracklayer S4Vectors soGGi SummarizedExperiment tidyr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + progeny = derive2 { name="progeny"; version="1.10.0"; sha256="09rq3nf9zm7w9djmx8xc8j3win3597p2v36zqgkhgkjwq5rkjgsh"; depends=[Biobase dplyr ggplot2 ggrepel gridExtra tidyr]; }; + projectR = derive2 { name="projectR"; version="1.4.0"; sha256="1xn8kfxw6g1mq53yp8380p401lxwff6j0z5px6iq0ssajrl7md67"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; }; + proteinProfiles = derive2 { name="proteinProfiles"; version="1.28.0"; sha256="0qdax0xq0hw6im9f9ai8k230gin66vnba23i132d8mg0hlh4aic6"; depends=[]; }; + psichomics = derive2 { name="psichomics"; version="1.14.2"; sha256="1rgi89van6h8wkwhflkf9k79jxh4cz6wmrh897nqg0l330sdw7q0"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma org_Hs_eg_db pairsD3 plyr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; + psygenet2r = derive2 { name="psygenet2r"; version="1.20.0"; sha256="1321yih217rqspfxi829p6ymdda10d1q0vk1vkn0dj5721c4p1sg"; depends=[BgeeDB Biobase BiocManager biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; + pulsedSilac = derive2 { name="pulsedSilac"; version="1.2.0"; sha256="13isv3ip1ia5z09sa3fydcf5736ymlm1d00iy0p5b8m38g7znryv"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment taRifx UpSetR]; }; + puma = derive2 { name="puma"; version="3.30.0"; sha256="02qdjc64ad5h564p1q06fr5pj4dx0lwbk06kf73jlzv0xzsqzlym"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; + pvac = derive2 { name="pvac"; version="1.36.0"; sha256="1srp56jjihc3qi6ff35nl25hvdvwrjl431q0sbrk5fd8la085n0c"; depends=[affy Biobase]; }; + pvca = derive2 { name="pvca"; version="1.28.0"; sha256="1kxl8g3aj5c1d5knj84yxpj1yi3rpymg8gdg4605yrkvw6dkc7r9"; depends=[Biobase lme4 Matrix vsn]; }; + pwOmics = derive2 { name="pwOmics"; version="1.20.0"; sha256="0f45m1lx71hj8n1kgy7wqjvnc6dbm4a5sl20yyq5nhv05vq2i0mf"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; + pwrEWAS = derive2 { name="pwrEWAS"; version="1.2.0"; sha256="0cif7cb5x3a4pkq2v0wn0jjazxiq5rpr9yywf93y4k7kp4wsb0i4"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; }; + qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.6.0"; sha256="0ib991zzssncm6m9ylp9s9irqndxsh6529gggw3c53hwlnqrik1x"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr GenomicRanges ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer statmod stringr tibble tidyr]; }; + qckitfastq = derive2 { name="qckitfastq"; version="1.4.0"; sha256="1nc0lz7js6wb14sb059lcx09kyk54wid7hfwgclmw3vkahj108lm"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; + qcmetrics = derive2 { name="qcmetrics"; version="1.26.0"; sha256="1m1qvdagl1hl5lj6z97kfsgcfmlq21iqg7vvwfllp6iynfq8m5ba"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; }; + qpcrNorm = derive2 { name="qpcrNorm"; version="1.46.0"; sha256="0gl6jh9fcmvi8czcf45y77smya8gjc4xrbwp8bxz1d9l7n7qsrzs"; depends=[affy Biobase limma]; }; + qpgraph = derive2 { name="qpgraph"; version="2.22.0"; sha256="04xq2qs2562ri5ynszx9idn0nnnpv73kjv37iaa2v9j7y8r2ri8p"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; + qrqc = derive2 { name="qrqc"; version="1.42.0"; sha256="19jy4sr3svvrz72lwf7l5qk5avg1jani0xwfm65rs8j8nx12g1bc"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; }; + qsea = derive2 { name="qsea"; version="1.14.0"; sha256="0357pkzqka0wqrzisywikyn05xczfvzlr0lv9i2cdc4h9w4476s2"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges KernSmooth limma MASS Rsamtools rtracklayer zoo]; }; + qsmooth = derive2 { name="qsmooth"; version="1.4.0"; sha256="0ywbxzd6safc1kql3r528ijyslwyl4b0rmyad6m7pg2mg9rb255y"; depends=[SummarizedExperiment sva]; }; + quantro = derive2 { name="quantro"; version="1.22.0"; sha256="0ap9cl5z79wg44mnagjsk8py3kngb4f0ddnx85cbnwqkvb769zbz"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; + quantsmooth = derive2 { name="quantsmooth"; version="1.54.0"; sha256="0gx6l4sn1xkf4q439iqhlrkggsy517vk0wv1ladff6ynfc9an9l5"; depends=[quantreg]; }; + qusage = derive2 { name="qusage"; version="2.22.0"; sha256="01nxzd2siyg1qaxingfr6a5nm75l9lxf0j3i78dkgb9zifd735xf"; depends=[Biobase emmeans fftw limma nlme]; }; + qvalue = derive2 { name="qvalue"; version="2.20.0"; sha256="1hndmdr9niagbr4ry0vbhffvjzjg9im27kdbn0sa774k6r5b4z3f"; depends=[ggplot2 reshape2]; }; + r3Cseq = derive2 { name="r3Cseq"; version="1.34.0"; sha256="0knanp59s6piwnv8yz5k1rqbw2csp6dvc1qx0n4qfc5b2cd14v2q"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; + rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.28.0"; sha256="1rx61mqycphw925dcdj3z697rmkky6m2xxr3dhk8shmr7cx4q06g"; depends=[data_table XML]; }; + rCGH = derive2 { name="rCGH"; version="1.18.0"; sha256="0jbka7v4jjznyy4m54jma9n0mvlscpfrbgzhbffr2i4wpjynpacx"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rDGIdb = derive2 { name="rDGIdb"; version="1.14.0"; sha256="0qz0y0yfdi1zgpgc7fb59ql17i1x9snkaaxpxlmnblsqd7hnm1zn"; depends=[httr jsonlite]; }; + rGADEM = derive2 { name="rGADEM"; version="2.36.0"; sha256="14mflbwhhj9f3b05zdlsdjwxmpb120r23fy306qkvxjprdqn4sz8"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; + rGREAT = derive2 { name="rGREAT"; version="1.20.0"; sha256="0n8dw9ibb2klsczcxvvinpi9l53w8cs436i0c8w2jmramayl593v"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; + rRDP = derive2 { name="rRDP"; version="1.22.0"; sha256="1cclfi3gxjszp11qq9v0smh2djzfqfay9pzmrpd4ljk27akccdnq"; depends=[Biostrings]; }; + rSWeeP = derive2 { name="rSWeeP"; version="1.0.0"; sha256="0sz2abgfh0cacb5q6rrp0m84vc8bw6c568135w226qmkq4r96n4f"; depends=[pracma]; }; + rScudo = derive2 { name="rScudo"; version="1.4.0"; sha256="1js8dv9aslnl8wd7xp5s2pkxbbsb5g124g2ckpliwfpiadzccs7z"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; + rTANDEM = derive2 { name="rTANDEM"; version="1.27.0"; sha256="095nqny8nzh3400b4l2npgxy4jwg4vq3j6zircipyr7qz6qd61fs"; depends=[data_table Rcpp XML]; }; + rTRM = derive2 { name="rTRM"; version="1.26.0"; sha256="0ah6idnvxdyq9wq06ja6nkswl6prg0n3yfnbag4hnr9vz7dw1xbf"; depends=[AnnotationDbi DBI igraph RSQLite]; }; + rTRMui = derive2 { name="rTRMui"; version="1.26.0"; sha256="1bwqd31pp9b27r7ckw3ixm06vbajljby42d9w6fffl7sl464qbnf"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; + rWikiPathways = derive2 { name="rWikiPathways"; version="1.8.3"; sha256="0ymjmnmz3lffjz6js2xdz0qfqrvmz33yb0d58ssdwfjf9nq0gx38"; depends=[data_table httr rjson tidyr XML]; }; + rain = derive2 { name="rain"; version="1.22.0"; sha256="1sgz52j08y35828rpb46iv25k62yw70bqw3qp5l9nj7kbkqrvjqw"; depends=[gmp multtest]; }; + rama = derive2 { name="rama"; version="1.62.0"; sha256="1cir9jp0ma4afj427n1k0w8g41mqglbswhmb3q3hsc9dg4skcl1x"; depends=[]; }; + ramwas = derive2 { name="ramwas"; version="1.12.0"; sha256="134lalqnqqphc13glh460za2anbcgysfd5dci9iyb7sykmil3cl4"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; + randPack = derive2 { name="randPack"; version="1.34.0"; sha256="1qvnk0bl3wkk23a3h50khjbbnf7yhcqc6sr7yf5nnill0d1rqk1h"; depends=[Biobase]; }; + randRotation = derive2 { name="randRotation"; version="1.0.0"; sha256="0maz3h4p7z08z6qifh3qkcj5nb92q2naa8hg71a2109qqbifl04r"; depends=[Rdpack]; }; + rbsurv = derive2 { name="rbsurv"; version="2.46.0"; sha256="13l4llcgic3z56vz1rf17k8v958193bj93dapapibjrj384mhfck"; depends=[Biobase survival]; }; + rcellminer = derive2 { name="rcellminer"; version="2.10.0"; sha256="0vzsw24jbsvnjcb5ia814jnw1zgy3h7j1g54zqwivmpq1pidcni7"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; + reb = derive2 { name="reb"; version="1.65.0"; sha256="0id6acnzaqahrn2gax8zy07hrk8dnpzbb7n8aki4qadggn2i7fl6"; depends=[Biobase idiogram]; }; + receptLoss = derive2 { name="receptLoss"; version="1.0.0"; sha256="0r74bfgjyikg9z7bnr933cc1s4x2jipam1ygx3wx86f5s39srvr3"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; + reconsi = derive2 { name="reconsi"; version="1.0.0"; sha256="1xzmzi22mrwslbar1clh253vyv3hv427dbb7rhjqn5z4vib6piz9"; depends=[ggplot2 KernSmooth MASS phyloseq reshape2]; }; + recount = derive2 { name="recount"; version="1.14.0"; sha256="1x5wyml3hmpgs32f97hikm8h0150nj66ai7ldqpsn600fx2qivy8"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; + recoup = derive2 { name="recoup"; version="1.16.0"; sha256="0wv5s62mmigkq9xj3rlz229g8m6x2n9zkjk3rimxb1izg0ix22m2"; depends=[BiocGenerics biomaRt circlize ComplexHeatmap GenomicAlignments GenomicRanges ggplot2 rtracklayer S4Vectors]; }; + regionReport = derive2 { name="regionReport"; version="1.22.0"; sha256="001j7b45gqc4shh4f71686zflj1z331vw0ll9z8gmgki5a0vdms9"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitcitations knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; + regioneR = derive2 { name="regioneR"; version="1.20.1"; sha256="0bzjwzj5mvb49wgvs3gd3jfpm7s0zfkca763i65i7m994lgvz33c"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; + regsplice = derive2 { name="regsplice"; version="1.14.0"; sha256="07fglqjm8zi64r4sp3hf7x4a86vblrbmv78km73lj6602nk3wqb7"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; + regutools = derive2 { name="regutools"; version="1.0.1"; sha256="1jwfxw5il4f4kdgkn3zi57fbf05ag51ab18k0mx50glmca8271r6"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; + restfulSE = derive2 { name="restfulSE"; version="1.10.0"; sha256="1hhng7i52jj0si1zxmkzk6zbafb92h7mxmvx86ky7lxj36gwqjzc"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; + rexposome = derive2 { name="rexposome"; version="1.10.0"; sha256="0wmhbr2qm2774ppgwbhc0m83bbfq9x0p7vljxl296hvqqnxbljkg"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; + rfPred = derive2 { name="rfPred"; version="1.26.0"; sha256="1w2kwjqsvak271h82v96aqyrzilavz4ynnk5r5ldpyfi4all4lsz"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; + rfaRm = derive2 { name="rfaRm"; version="1.0.0"; sha256="0zrmb2accyr7naccnk2kp8fkg2zzwflx2knymgvv3gfmdysnq4bc"; depends=[Biostrings data_table httr magick rsvg stringi]; }; + rgsepd = derive2 { name="rgsepd"; version="1.20.2"; sha256="179dn7kc7frr87f03qjkm7vxj3licn7mrq9yvagzfjm7pnqzr5ps"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; + rhdf5 = derive2 { name="rhdf5"; version="2.32.2"; sha256="1v6ygi0avh3gmaj2ld2nr7vww4ipw39b5kqci9w27i3ja985lb8j"; depends=[Rhdf5lib]; }; + rhdf5client = derive2 { name="rhdf5client"; version="1.10.0"; sha256="0l49i56dnvabls011rd8yiqv6qkf8iszwq5afirzcs3fs2acb6iz"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; + rhdf5filters = derive2 { name="rhdf5filters"; version="1.0.1"; sha256="06lp7phfz1asvppgm6sx9ix5w4wh8qz2dvklz1k0rvzrli5mb7pp"; depends=[Rhdf5lib]; }; + riboSeqR = derive2 { name="riboSeqR"; version="1.22.0"; sha256="04a4dkmacd6xy55m84amxa0fspbc4kgg9r9k7bc3wrxswk77ccxk"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; + ribor = derive2 { name="ribor"; version="1.0.0"; sha256="1650shz9iqp1zvlj73jkgq9dryxfd8v337fmg0v8f0b7y1vb0jbh"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; + ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.0.6"; sha256="0fkc0bf1ab6avxx762v3rn5hgbzavdf48wlg3hbyqk7dcv4firp2"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; + rmelting = derive2 { name="rmelting"; version="1.4.0"; sha256="1pj3n330q5anbg1pazlvgx0ndj0hxc00h0ajqpcwzxmdgnaq6qgd"; depends=[Rdpack rJava]; }; + rnaSeqMap = derive2 { name="rnaSeqMap"; version="2.46.0"; sha256="17s1ad22zj09cklqxnccb3c4x75vgv01da5y7r1c08g6cvzv456a"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; }; + rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.18.0"; sha256="1cqfx6fwkpbx7c31dhq6j0ijll39y90r54a1bnhxg2q0m4fba2a7"; depends=[RColorBrewer]; }; + roar = derive2 { name="roar"; version="1.24.0"; sha256="069g887migvk70n0377dqr0fk7wjbz3w0asgk42bwhp8xpjfym6f"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; + rols = derive2 { name="rols"; version="2.16.3"; sha256="1hyp0q7jlixjia850xxr2kl2094xwmjfj92cgjxq3lmg173ljl2y"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; + ropls = derive2 { name="ropls"; version="1.20.0"; sha256="1drww1mr0nira3qplyga6s3mljpjxshjgbn524kzxi0nrfbcvmnx"; depends=[Biobase MultiDataSet]; }; + rpx = derive2 { name="rpx"; version="1.24.0"; sha256="1m9n19dj4wvnx31m3hlpw4pf55rw1wvh5s7fwsh4xil4c4h236m8"; depends=[RCurl xml2]; }; + rqt = derive2 { name="rqt"; version="1.14.0"; sha256="0hv1hhmnk6qbilwbg6978mljk9cssz1ma1ri3qqmq9wdn6z6bxjl"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; + rqubic = derive2 { name="rqubic"; version="1.34.0"; sha256="1n1xdkgcynlawp0gl12fbynrxzjf5rpxa9i8ywc9dbl5q7dg7082"; depends=[biclust Biobase BiocGenerics]; }; + rrvgo = derive2 { name="rrvgo"; version="1.0.1"; sha256="19slkap9fy60p8xkq73vyzc4r1q2qkq0wi640dkgjnydxjpkm9p7"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap wordcloud]; }; + rsbml = derive2 { name="rsbml"; version="2.46.0"; sha256="1i1izznnwzrc6m7s3hblfff466icfvxl2gjdqaln8qfg9v87rslx"; depends=[BiocGenerics graph]; }; + rtracklayer = derive2 { name="rtracklayer"; version="1.48.0"; sha256="1zcgk92sidhy4y7ws9ms4nkkh2hnccfhfh53qgna0kma9jy4v5xf"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; }; + runibic = derive2 { name="runibic"; version="1.10.0"; sha256="1x3a710pxa0slw51267r6hrx7048mv3qfj7brdp27n8wyrrfih8w"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; + sRACIPE = derive2 { name="sRACIPE"; version="1.4.0"; sha256="1p9np0ah7sfdwd519csia3clf7zfgsz4xggn83h4spswf0q1zd4g"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; + sRAP = derive2 { name="sRAP"; version="1.27.0"; sha256="194ff277hpp717vvs6z5qksl747g6k5y6g8agbh3cl43vkyysapd"; depends=[gplots pls qvalue ROCR WriteXLS]; }; + sSeq = derive2 { name="sSeq"; version="1.26.0"; sha256="1kdwv93qsmsy1ky2bdg2jslc74fv3awx7f35cppdnixgwcafv3jp"; depends=[caTools RColorBrewer]; }; + safe = derive2 { name="safe"; version="3.28.1"; sha256="149zi9vs2sbwm0q75h3k48fvxb4kbjklfl1g5wvjsqami363gpjw"; depends=[AnnotationDbi Biobase SparseM]; }; + sagenhaft = derive2 { name="sagenhaft"; version="1.58.0"; sha256="1x550al1xgihv6my5f0dmmr3c5j6g4xg76hrsmil2lf0y9dbi0yx"; depends=[SparseM]; }; + samExploreR = derive2 { name="samExploreR"; version="1.12.0"; sha256="11fqvgnz4wy5nrxvci19g2ydd4s3ld3nglg3kiba75i3nznrn1ny"; depends=[edgeR ggplot2 RNAseqData_HNRNPC_bam_chr14 Rsubread]; }; + sampleClassifier = derive2 { name="sampleClassifier"; version="1.11.0"; sha256="1dv0g8xcrb2br10fhhmprx4p6zwbm945m2nms757ap9py8rzv1sy"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; + sangerseqR = derive2 { name="sangerseqR"; version="1.24.0"; sha256="0chvxqnriaxvfr68r93wmgflcbrfb7maz0pdv4h3ppzazn0j0663"; depends=[Biostrings shiny]; }; + sapFinder = derive2 { name="sapFinder"; version="1.26.0"; sha256="1d55bgjwmz8ncphdg1bzjgsc5vk1n5r36vbazkdm9ra500rr90pq"; depends=[pheatmap Rcpp rTANDEM]; }; + sarks = derive2 { name="sarks"; version="1.0.0"; sha256="0r949f972h7995k42mc675an5r2gd71mbaicbbdvnpjaq3m6qrc4"; depends=[binom Biostrings cluster IRanges rJava]; }; + savR = derive2 { name="savR"; version="1.26.0"; sha256="17jdnr47ivblfspr4b32z9fds1fqiiwsi2z6r524g1v4944p8w5a"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; + scAlign = derive2 { name="scAlign"; version="1.3.0"; sha256="0br9s8i9893pdlpgrail5sp17yzy8sl2m5liaa7m0ipammr96l5m"; depends=[FNN ggplot2 irlba PMA purrr Rtsne Seurat SingleCellExperiment tensorflow]; }; + scBFA = derive2 { name="scBFA"; version="1.2.0"; sha256="0l9s0dj5gkzplcb7ha6csqbgnbhki4zkq6j5kc5dzg6rmnir14ph"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; + scClassify = derive2 { name="scClassify"; version="1.0.0"; sha256="1r91xcws7wj11q86ifi0rw7m7m7zhxj5z942i0qn0zixahn89ff3"; depends=[BiocParallel cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; + scDD = derive2 { name="scDD"; version="1.12.0"; sha256="19q01jksxpv4p26wp2c6faa4fffkjnqlbcds2x955pk35jkqknxx"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; + scDblFinder = derive2 { name="scDblFinder"; version="1.2.0"; sha256="0znjxbcdq4i6b8fzsfx3ia0ah2m9pr0kbq3fmilpf7q033zxl7ph"; depends=[BiocNeighbors BiocParallel BiocSingular data_table DelayedArray dplyr ggplot2 igraph Matrix matrixStats randomForest scater scran SingleCellExperiment SummarizedExperiment]; }; + scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.8.0"; sha256="1mgpp678xsqn0agsffhpmj7mbca30yqfnb3v3fbxw9dz07zj08hy"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; + scGPS = derive2 { name="scGPS"; version="1.2.0"; sha256="0wkx9cbwwqggi8alpkj6b3fi098iyj84zyarn29ia74jczisyzxv"; depends=[caret DESeq dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; + scHOT = derive2 { name="scHOT"; version="1.0.0"; sha256="0hddblxzghp7br2vgn7xlqbyh1fsbkcs2w59p86msgm8xqj9fzf7"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scMAGeCK = derive2 { name="scMAGeCK"; version="1.0.0"; sha256="1diwmgr0jm18wkmk50nj0cmw0s77qwfk1amsbimrxw73j4sdphpm"; depends=[Seurat]; }; + scMerge = derive2 { name="scMerge"; version="1.4.0"; sha256="1kikd6bc2h9iz2gvil2awzrxnx68x88mhcbhwysfn70y6br5ckah"; depends=[BiocParallel BiocSingular cluster DelayedArray DelayedMatrixStats distr dplyr igraph M3Drop pdist proxy Rcpp RcppEigen ruv S4Vectors SingleCellExperiment SummarizedExperiment testthat]; }; + scPCA = derive2 { name="scPCA"; version="1.2.0"; sha256="1ihc1mhbzzmvv1md1axam01k1jc9z7c8psaw8pkd29wly35jpcgi"; depends=[assertthat BiocParallel cluster dplyr elasticnet kernlab matrixStats origami purrr Rdpack sparsepca stringr tibble]; }; + scPipe = derive2 { name="scPipe"; version="1.10.0"; sha256="1fqszps83j0w7r7y8z4h127m1shq6rj7d5yfs6gssva9anf2ff9m"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue hash magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib rlang robustbase rtracklayer S4Vectors scales scater SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; + scRecover = derive2 { name="scRecover"; version="1.4.1"; sha256="1q4r75hzcb9xv4d4vj4f6ks58q887xn5rik1v7cc8imvpg329j5i"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl Rmagic rsvd SAVER]; }; + scTGIF = derive2 { name="scTGIF"; version="1.2.2"; sha256="03iqjs6pvy4hnxn50nd7558lqsygv7il8pbmsl71wrh73m50rv45"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; + scTHI = derive2 { name="scTHI"; version="1.0.0"; sha256="19rrc0nwy03dmhvbbalys6wwapzj6yp59m4y134p830vd5ah696z"; depends=[BiocParallel Rtsne]; }; + scTensor = derive2 { name="scTensor"; version="1.4.3"; sha256="024hivjpxvjdsjh7zkkr422b3bpqi0kgy4nnny5wkkhpn0aimwlq"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; + scater = derive2 { name="scater"; version="1.16.2"; sha256="1pa5wvgjb30rw1vsjwbnn07ss3sc5n8ck5d7khdby4r2s9177s33"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats ggbeeswarm ggplot2 Matrix Rcpp rlang S4Vectors SingleCellExperiment SummarizedExperiment viridis]; }; + scde = derive2 { name="scde"; version="2.16.0"; sha256="15v4h3j66aqgpd96bswb0fa9f9gqgas6mw104643k7p58vgpw1gj"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; + scds = derive2 { name="scds"; version="1.4.0"; sha256="18654rrxdislwqkqi431chkr3hijjn8jarb3yzyl0sl5dippbwi7"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; + scfind = derive2 { name="scfind"; version="1.9.0"; sha256="12sjy9gr6cgms69yrskcs67m0r16ird7ggbn9zh8ghpdnn9dwy2s"; depends=[bit dplyr hash Rcpp reshape2 SingleCellExperiment SummarizedExperiment]; }; + schex = derive2 { name="schex"; version="1.2.0"; sha256="03634vg0q4jxai5hlfcfvi41w7l4xfb1mkh1ghl7vjcazyjw56ck"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; }; + scmap = derive2 { name="scmap"; version="1.10.0"; sha256="1vxln9dq3alqr0pqjc67m8n0536s4iz7zh0nc11v03469d0hbznx"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scmeth = derive2 { name="scmeth"; version="1.8.0"; sha256="19ppdsw379xb0wm7fn788vn7cvmjkqf3p4jkh85z3iz9ik2g7vaq"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; + scone = derive2 { name="scone"; version="1.12.0"; sha256="12hcmbpncm0l1yxhm3sgkqqfri7s5qc46ikv5qcj8pw5a42rkx3g"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SummarizedExperiment]; }; + scoreInvHap = derive2 { name="scoreInvHap"; version="1.10.0"; sha256="0fvi85m5ca25jag42603ca80ymbgl3n67jj48v43lr82jxaip5p1"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; + scran = derive2 { name="scran"; version="1.16.0"; sha256="1gm4ys4aq8h1pn45k1rxk384wjyf55izivw8kgxbrflj6j4xvvsv"; depends=[beachmat BH BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats dqrng edgeR igraph IRanges limma Matrix Rcpp S4Vectors scater SingleCellExperiment statmod SummarizedExperiment]; }; + scruff = derive2 { name="scruff"; version="1.6.0"; sha256="1fy7a0g2sxlq3wf0adysrjw71wxp9zvycqkzd0xf01garrpaxz2k"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; + scry = derive2 { name="scry"; version="1.0.1"; sha256="1dmf5mncwda5ikc54hkbl45rq7zqxdnr7zpxg8452km9dcxiw8wh"; depends=[glmpca Matrix SingleCellExperiment SummarizedExperiment]; }; + scsR = derive2 { name="scsR"; version="1.23.0"; sha256="0likrrwlfnrsmyd5qvh2dhfl5xb4401g3q42x4xfbhgwfzjcnwb2"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; }; + segmentSeq = derive2 { name="segmentSeq"; version="2.22.0"; sha256="0wgjnvri5663829n0p7bnymj6pwh7wnxf0frn4mprwncm01xnvbq"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; + selectKSigs = derive2 { name="selectKSigs"; version="1.0.0"; sha256="0mai34jfhgfr4kdw8m0ffy90517mw83qzbxv62dxgplvj1rmgpjn"; depends=[gtools HiLDA magrittr Rcpp]; }; + semisup = derive2 { name="semisup"; version="1.12.4"; sha256="10vr15ijrlfjd3vy8pk798hifwwald3vdlgpymp4881gsr4wcssd"; depends=[VGAM]; }; + seq2pathway = derive2 { name="seq2pathway"; version="1.20.0"; sha256="1j7zh9283m9y6wf57211cnl5jjwf5x1qn3y6590nsarli265dgbr"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; + seqCAT = derive2 { name="seqCAT"; version="1.10.0"; sha256="0fz4nyk4jcvl5g5k9s851yc3sn4mq5q200k1l06dwds6dfxyiac5"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; + seqCNA = derive2 { name="seqCNA"; version="1.34.0"; sha256="0h3wcq0d1bhlsl4dz4zhi942hjxisjjsjp5jkrg6272w8m0pllsk"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; + seqLogo = derive2 { name="seqLogo"; version="1.54.3"; sha256="09kkxir305fv8z2yyihvspkrzclxbw1cx5mvhfkrhl10rap6662j"; depends=[]; }; + seqPattern = derive2 { name="seqPattern"; version="1.20.0"; sha256="0f1yvx2ri1557rzjx08q5bgml1cvkm8hjl8xn1qi4rjs64sy6mci"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; + seqTools = derive2 { name="seqTools"; version="1.22.0"; sha256="09gq3g5ngf91pp8ljqh2njc7mnb3jgnjqdgh6vwabx6x3k4pjvdx"; depends=[zlibbioc]; }; + seqbias = derive2 { name="seqbias"; version="1.36.0"; sha256="0sy2fv98x4qfz9llns28jh1n4bi991jj856y8a5fbzpx7y990lai"; depends=[Biostrings GenomicRanges Rhtslib]; }; + seqcombo = derive2 { name="seqcombo"; version="1.10.0"; sha256="0lgcnfzynz2h48d14gqkj146g51m11pccl8q6f1kaq4i8mrka6dz"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr rvcheck]; }; + seqplots = derive2 { name="seqplots"; version="1.26.0"; sha256="0br20jw52p7jjqr7kidwv340kxidl3mnbpnd4kswq4xlnfi3gakz"; depends=[BiocManager Biostrings BSgenome class DBI digest DT fields GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 Rsamtools RSQLite rtracklayer S4Vectors shiny]; }; + seqsetvis = derive2 { name="seqsetvis"; version="1.8.0"; sha256="0hxfh1fx530s3z6zh6axny3kr1lrzj7y47rn1l8p3k1sdhlhccqq"; depends=[data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma pbapply png RColorBrewer Rsamtools rtracklayer S4Vectors]; }; + sesame = derive2 { name="sesame"; version="1.6.0"; sha256="0656k1cv15jvip6ppjqzmic0rf7hlgddrcbqjyxvz2d6730yd68g"; depends=[BiocParallel DNAcopy GenomicRanges ggplot2 HDF5Array illuminaio IRanges MASS matrixStats preprocessCore randomForest S4Vectors sesameData SummarizedExperiment wheatmap]; }; + sevenC = derive2 { name="sevenC"; version="1.8.0"; sha256="0b3nxw2333amlqnqv9xqqpf3by4l26rwzbmsy1y4fi9v4j7np3qc"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; + sevenbridges = derive2 { name="sevenbridges"; version="1.18.1"; sha256="1dm57fpgl1xf9mjrz32jlmasilfwa29kfbvq3kbxjd4chhm4kih9"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; + shinyMethyl = derive2 { name="shinyMethyl"; version="1.24.0"; sha256="1j7msbb3ldqx60wx2g4qckycwyg4j7cnpj8lmqd5867a0fpi41xk"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; + shinyTANDEM = derive2 { name="shinyTANDEM"; version="1.26.0"; sha256="06hkpdgdbydxyhcgg95zhanwq3vab039x9zgmhbjlr9aaxpqng59"; depends=[mixtools rTANDEM shiny xtable]; }; + sigFeature = derive2 { name="sigFeature"; version="1.6.0"; sha256="1sdwvzxlxfiqybnc4nbdsvss8mj8kbmp9jca1v293gqidixwfk5n"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; + sigPathway = derive2 { name="sigPathway"; version="1.56.0"; sha256="0a79sdvag80p7xcdz8mp8wiby36yxmappzycfd2rp36v9drjk0h5"; depends=[]; }; + sigaR = derive2 { name="sigaR"; version="1.35.0"; sha256="05cmjdd7brmmshlam940qhpj1wzk7a4j86hqp3i5rwcqljc7qhzf"; depends=[Biobase CGHbase corpcor igraph limma marray MASS mvtnorm penalized quadprog snowfall]; }; + siggenes = derive2 { name="siggenes"; version="1.62.0"; sha256="0i4y1hgq1ljxkf6sypb6c8yp412a8q5v5z68cx1zrgxnccvp0mfy"; depends=[Biobase multtest scrime]; }; + sights = derive2 { name="sights"; version="1.14.0"; sha256="1m71q14hwqlyrisgsl8j93rl4z2qkya531pzsajq70n2x87ghjxy"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; + signatureSearch = derive2 { name="signatureSearch"; version="1.2.4"; sha256="0wbf4bk8chkhb930c2clcvllvnrwx2p779h56fm4v7x1qp9shzxz"; depends=[AnnotationDbi BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix qvalue Rcpp readr reshape2 rhdf5 RSQLite scales SummarizedExperiment visNetwork]; }; + signeR = derive2 { name="signeR"; version="1.14.0"; sha256="1mjnh1vxqx0mld10m5plsnml1c30j534nbwqiyxcv2habchkdfnf"; depends=[BiocGenerics Biostrings class GenomeInfoDb GenomicRanges IRanges nloptr NMF PMCMR Rcpp RcppArmadillo VariantAnnotation]; }; + signet = derive2 { name="signet"; version="1.7.0"; sha256="1qq3hnawaslqv2fp5dc5c552r430kmxhf0b0qwzny8ms9g83azf5"; depends=[graph igraph RBGL]; }; + sigsquared = derive2 { name="sigsquared"; version="1.20.0"; sha256="1mgg4gg5h0ms6srbib8am1i8l9k0vcxj99j7i90h72pmdipwmy4a"; depends=[Biobase survival]; }; + similaRpeak = derive2 { name="similaRpeak"; version="1.20.0"; sha256="02nhbwf0xck8inn49hnhk629f5jbh3ian069nif7hvi6pxg5l8bx"; depends=[R6]; }; + simpleaffy = derive2 { name="simpleaffy"; version="2.64.0"; sha256="040043spblr8v67lkn3nnxhgfmfh2iwaizph4fnms1ik6qz662x7"; depends=[affy Biobase BiocGenerics gcrma genefilter]; }; + simulatorZ = derive2 { name="simulatorZ"; version="1.22.0"; sha256="1i8bp08bs129d9crj7hhqabb2di72zwcl27v58a0vzbnwkf1m0fd"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc SummarizedExperiment survival]; }; + sincell = derive2 { name="sincell"; version="1.20.0"; sha256="1byzikl2c0w25ni9djksdzqsvlxdm0n03lc476qafai46vk7jzr6"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; + singleCellTK = derive2 { name="singleCellTK"; version="1.8.0"; sha256="069p7nh2lkdy8kb7rdp6zqjjyjbsbvycf8zfcvbxr7fmxyvnks2r"; depends=[AnnotationDbi ape Biobase celda circlize cluster colourpicker ComplexHeatmap data_table DelayedArray DESeq2 DT enrichR ggplot2 ggtree gridExtra GSVA GSVAdata limma MAST matrixStats multtest plotly RColorBrewer reshape2 Rtsne S4Vectors shiny shinyalert shinyBS shinycssloaders shinyjs shinythemes SingleCellExperiment SummarizedExperiment sva umap]; }; + singscore = derive2 { name="singscore"; version="1.8.0"; sha256="134ycza15x82g7f039fd6qyq2gwzvwq1jx9wya3qpi13lbfazicw"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; + sitePath = derive2 { name="sitePath"; version="1.4.2"; sha256="1n40w5v3j7wn8p3wagy5n21x10hk1fbnii7vr47ws2p5cxw0ilrd"; depends=[ape Rcpp seqinr]; }; + sizepower = derive2 { name="sizepower"; version="1.58.0"; sha256="0ql63mp2d3gx9j8i9f2bj20l2ibxzapnwawkrwxcs2bd5l7s622w"; depends=[]; }; + skewr = derive2 { name="skewr"; version="1.20.0"; sha256="1lrlx21ia0jk22nnqc2hjp7dqnymvlmvx932s4r34rszwwli6dc8"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; + slalom = derive2 { name="slalom"; version="1.10.0"; sha256="0r99mca6vyvcz1izpicdmbahdvzwbpjlfna1xlvmzzcp4rj0y9fs"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; + slingshot = derive2 { name="slingshot"; version="1.6.1"; sha256="0gh91fkikw7y22sb00yvbjjssr64f4swikcz2ydri84c4jv8nvqa"; depends=[ape igraph matrixStats princurve SingleCellExperiment SummarizedExperiment]; }; + slinky = derive2 { name="slinky"; version="1.6.0"; sha256="12mcla3xlj0qn9kv4y734khn6vsrkcv7gkm27vm3b2xhdvipv0q7"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; }; + snapCGH = derive2 { name="snapCGH"; version="1.58.0"; sha256="19b61szwki5jn6k9979h43bwqhrhlj7b3kvv71hpws6rqxvjfal8"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; + snapcount = derive2 { name="snapcount"; version="1.0.0"; sha256="0zrdg53gs4aqw1bq4qwmg3zc98nwp3h74a45vhbsd88x1lysyxrr"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; + snm = derive2 { name="snm"; version="1.36.0"; sha256="11kqzc9zwgzys3ni9fl4lq0cmik8zbzzf32i82q1yl6vn5kccvsy"; depends=[corpcor lme4]; }; + snpStats = derive2 { name="snpStats"; version="1.38.0"; sha256="1qv3nqqr30d3n66mawqd9dbl95dl89r4bcjvkc5iassy1yrwr8wq"; depends=[BiocGenerics Matrix survival zlibbioc]; }; + soGGi = derive2 { name="soGGi"; version="1.20.0"; sha256="173xdwbj3ywm0w7kfz47whlx9ankk6lkmkp2hw9lmblaqhaa8v0j"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + sojourner = derive2 { name="sojourner"; version="1.2.1"; sha256="0sda3mb8r6s5s4c1ha9570n29ls76x57wvyq8nclrys7x0v325gi"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang rtiff sampSurf scales shiny shinyjs sp truncnorm]; }; + sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.12.0"; sha256="0fckk5iy4masrc0kyw666mrz8mdzvmpn9akk9fr4qa63shxxgfaq"; depends=[MASS MCMCpack optparse tmvtnorm]; }; + sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.0.5"; sha256="1jjf467q3minqc01rvmm8phkpas61k63c18iqzdrngdy9yj6kb2z"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; + sparsenetgls = derive2 { name="sparsenetgls"; version="1.6.0"; sha256="1pn2v98d16y3y8d6x41x0srx12zz6lki4apcvsj76nz88m7kr64l"; depends=[glmnet huge MASS Matrix]; }; + specL = derive2 { name="specL"; version="1.22.0"; sha256="1h0lfbqx1qsqvrwhhh16s52g1wlr9c2pkb26wbrlb3nar2514x66"; depends=[DBI protViz RSQLite seqinr]; }; + spicyR = derive2 { name="spicyR"; version="1.0.1"; sha256="1dqnf39pw0d6fbxl5sz5r9zi5ns3bj0003jhm4ipckp5h4kiydqq"; depends=[BiocGenerics BiocParallel class concaveman ggplot2 IRanges lme4 lmerTest mgcv pheatmap purrr rlang S4Vectors spatstat]; }; + spikeLI = derive2 { name="spikeLI"; version="2.48.0"; sha256="0s9qm44n8m03vwl66zmjhq0hpcvm8j7a9xqag7ig8kwv5n6rhzsr"; depends=[]; }; + spkTools = derive2 { name="spkTools"; version="1.44.0"; sha256="0kjkxmcqffppkx64nzrj6x45pcard9wggclz8hgsvnhid3dkmj5s"; depends=[Biobase gtools RColorBrewer]; }; + splatter = derive2 { name="splatter"; version="1.12.0"; sha256="08p7pf6abz0110vv8pi6g5b3yhfv9fgqjm05gbl9vk29a0gyb5d3"; depends=[akima BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; + splineTimeR = derive2 { name="splineTimeR"; version="1.16.0"; sha256="08rb0ss66bg28ggsav35bkd7sfaz18kd320bbdsd44l4v2b4vp1b"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; + splots = derive2 { name="splots"; version="1.54.0"; sha256="16a18m8q04avv46wn75pz1vkfpschhs0j1gfvmdl6dd29r82d9r4"; depends=[RColorBrewer]; }; + spotSegmentation = derive2 { name="spotSegmentation"; version="1.61.0"; sha256="1fsz8xqxrc000jj1mn59ip3lx558j0589snyxvb9kkkhbc253n6c"; depends=[mclust]; }; + spqn = derive2 { name="spqn"; version="1.0.0"; sha256="14z5dyi8wl03f4sc56d03z72nhyzgf7dcxq7ap5s2ch961ifyycp"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; + srnadiff = derive2 { name="srnadiff"; version="1.8.0"; sha256="01pxawr362wgfj0smnivjrwr3f5p8wlnhb5jrjv2hpshak2jsacg"; depends=[BiocManager BiocParallel BiocStyle DESeq2 devtools GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + ssPATHS = derive2 { name="ssPATHS"; version="1.2.0"; sha256="0n6safqhsw8490vpy1xvagx9m1am4l9y0plkq4ldds4m92g6p432"; depends=[dml MESS ROCR SummarizedExperiment]; }; + sscore = derive2 { name="sscore"; version="1.60.0"; sha256="141jwdaj5kww1fb0vv6m36ai1irz4z2gqb4xzl1hvch42m5ryfkl"; depends=[affy affyio]; }; + sscu = derive2 { name="sscu"; version="2.18.0"; sha256="13avxlg06r3xmirb6hgya4m5sgza66agxfm5x9y2xc93azww28js"; depends=[BiocGenerics Biostrings seqinr]; }; + ssize = derive2 { name="ssize"; version="1.62.0"; sha256="1v1fdck6par773anvbj4cqx6bkdkqcq726r928g035yhr1b7qj8k"; depends=[gdata xtable]; }; + ssrch = derive2 { name="ssrch"; version="1.4.0"; sha256="101bvpyh5mi3kq1ch0qb79pxj5mfvqb5n51mw6ylzzqdrsfq2m2y"; depends=[DT shiny]; }; + ssviz = derive2 { name="ssviz"; version="1.22.0"; sha256="0c4l2xsxikf11hd16wq670g9z7zmsqgx4ns0izpgp31m534c64i2"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; + staRank = derive2 { name="staRank"; version="1.30.0"; sha256="0nglf9qqc8ckfn7r4wbaghbr07qapjai7yx0bbl92ishwfdg2r6x"; depends=[cellHTS2]; }; + stageR = derive2 { name="stageR"; version="1.10.0"; sha256="0grmb78ihwwvi238x73bysjcbvrfynpbl8b1jrsb8v573xvixhrl"; depends=[SummarizedExperiment]; }; + statTarget = derive2 { name="statTarget"; version="1.18.0"; sha256="015xyiys56ni9zzfc67drhzr1mnyd1vrijz0fg6dkqsiyz1qpvjg"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; + stepNorm = derive2 { name="stepNorm"; version="1.60.0"; sha256="0xc7lkr9sddhpd8gmd0blsxm1ldw3h8lmxsfnf3w4gvliwir1zpr"; depends=[marray MASS]; }; + strandCheckR = derive2 { name="strandCheckR"; version="1.6.0"; sha256="0w31b3amcz7d4zqxcckznpqwz61vxbfdiacamlzwghjap7hcqvi9"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + struct = derive2 { name="struct"; version="1.0.0"; sha256="1bf7gm0gld6sl2p2gjqg7zg9snwkhsibmvasdjsm8fi1shjs77b0"; depends=[knitr ontologyIndex S4Vectors SummarizedExperiment]; }; + structToolbox = derive2 { name="structToolbox"; version="1.0.1"; sha256="1xviv72qrqhc7rzs7ydc83fkk6msvxsmx4y86qgw1pc4hc8hybc2"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; + subSeq = derive2 { name="subSeq"; version="1.18.0"; sha256="0x71zy0r5zp4l2mlypx2rykaay4wbjx82qy91nzk55z7qhid5451"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; + supraHex = derive2 { name="supraHex"; version="1.26.0"; sha256="170jz908g52xdybb6d4nqwrhyvjs80ffqv2yna59g9ysav280h0y"; depends=[ape hexbin MASS]; }; + survcomp = derive2 { name="survcomp"; version="1.38.0"; sha256="0df9pzgv71s3qz1qhi4p4y517w2zsrnvfh691izsfagm1drgdacm"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; + survtype = derive2 { name="survtype"; version="1.4.0"; sha256="16cdkqr88zdvm9kdvh6f63rld1aavnhba20gxdhad61nmkzd65y2"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; + sva = derive2 { name="sva"; version="3.36.0"; sha256="0xa1lm0k1a6nig90mab6xh4gln88rbs5l1cdr6ik6agg7jhs7ji4"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; + swfdr = derive2 { name="swfdr"; version="1.14.0"; sha256="1wjk0ni3b0qis27ki6crh0a68zrsbh2gynsgcl9v3zxnsczrhhyw"; depends=[]; }; + switchBox = derive2 { name="switchBox"; version="1.24.0"; sha256="1p39zz1jn4v2489n9kqpn4mzsq1mxh2bhsmfmfq0058h2ql80r90"; depends=[gplots pROC]; }; + switchde = derive2 { name="switchde"; version="1.14.0"; sha256="15kq7zyk1yrqrs54p921zm68s91nay7ymdm0rdnbh2z93dhv0ccm"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; + synapter = derive2 { name="synapter"; version="2.12.0"; sha256="0bpn350m5p35rxncqixvik26bilih1yks1jgkz1qd3a31vg0cxk5"; depends=[Biobase Biostrings cleaver knitr lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; }; + synergyfinder = derive2 { name="synergyfinder"; version="2.2.4"; sha256="02f6k7arxh6v9m6ardmvy5gsgxs0d1jq715dhcsf6z211yhrwyvn"; depends=[drc ggplot2 lattice nleqslv reshape2]; }; + synlet = derive2 { name="synlet"; version="1.18.0"; sha256="1d7ffnv0kxjd9y35lmdzzdvrvnbbfjkf0zc4y4d4h7s8ildfsi0s"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; + systemPipeR = derive2 { name="systemPipeR"; version="1.22.0"; sha256="01ilhlrvy28jfdyxjria4024yryj5zgympgqznw17g3y3az78kk2"; depends=[annotate assertthat batchtools Biostrings DESeq2 DOT edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma magrittr pheatmap rjson Rsamtools rsvg ShortRead stringr SummarizedExperiment VariantAnnotation yaml]; }; + tRNA = derive2 { name="tRNA"; version="1.6.1"; sha256="1wzkxwcacdnipxyyh1afyn27hyw843hajadqw0k2h7jy7jsg5dxf"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; + tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.6.1"; sha256="0gjnxldf4mf67hzzgr16n3jp1pjq9bzqknx8iw90d76wrqd1j0r5"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; + tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.8.1"; sha256="0mbzszh18nal6kfnvbxg52gyr8b3gqg0gg314m5xk7g7icps8bgv"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; + tRanslatome = derive2 { name="tRanslatome"; version="1.26.0"; sha256="1j5rc26qwvmck94kx1shi94ilgk8ahq5jc5azjssh1ydfi8n46bq"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; }; + target = derive2 { name="target"; version="1.2.0"; sha256="0cljpjfl5ybzsv6x0x0s5dfv3qv04rsc49lzn9jiaiv8yz0wbzdx"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; + tenXplore = derive2 { name="tenXplore"; version="1.10.0"; sha256="0g5gmhwpmyv7csyfcy0minh2law9vak7b1vzwhws4c285a30nsql"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; + ternarynet = derive2 { name="ternarynet"; version="1.32.0"; sha256="1xakvyinbk08qsl8czzcfix7rd51ylqbzml3vbaimjij24w61ga5"; depends=[igraph]; }; + tidybulk = derive2 { name="tidybulk"; version="1.0.2"; sha256="06yawix0whsg0knhbc1km1in1njx5lj4yq39j475imbv23wr3gjl"; depends=[dplyr lifecycle magrittr preprocessCore purrr readr rlang tibble tidyr]; }; + tigre = derive2 { name="tigre"; version="1.42.0"; sha256="1ai4ygai6094shavp5s6zkczgsmkfc8sv3xad5z2hdi53lap3gvl"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; + tilingArray = derive2 { name="tilingArray"; version="1.66.0"; sha256="0q2h1bgyj9sa03d8f6lyrqx336ln74zky1ijqzdrhnd1vyjdlbbf"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; + timeOmics = derive2 { name="timeOmics"; version="1.0.1"; sha256="0ks7aarl88sl5x0p43x8w0i6ai64ydz86jm47vysya0mdl3apsyc"; depends=[dplyr ggplot2 ggrepel lmms lmtest magrittr mixOmics propr purrr stringr tibble tidyr]; }; + timecourse = derive2 { name="timecourse"; version="1.60.0"; sha256="16pla2lp8agkv23pjg015dh0davwjdxhlb0npyynnnrgsbrsnxn7"; depends=[Biobase limma marray MASS]; }; + timescape = derive2 { name="timescape"; version="1.12.0"; sha256="0as8viljb0ivq8ngvjqc4kli48x559amgr9v5jkmxl29bpblv2l5"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; + tkWidgets = derive2 { name="tkWidgets"; version="1.66.0"; sha256="1v335n7yb9586i43q5m3fzw3gxnyghwib66zb5z5bj9720z0h7cy"; depends=[DynDoc widgetTools]; }; + tofsims = derive2 { name="tofsims"; version="1.16.0"; sha256="0ij0nmans69hp3h6l80aqn3lhzxlfyn7gvxmc1fmikv5y15sv3ds"; depends=[ALS ChemometricsWithR KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; + topGO = derive2 { name="topGO"; version="2.40.0"; sha256="13rhbvn27sj75fklf1cnjaazacx8yyjlhqlnbp5zk157q6y5cwdr"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; + topconfects = derive2 { name="topconfects"; version="1.4.0"; sha256="1wphsf09ji2mdhdyd4xzka4b6s8xc8kmyz7gk798796h2qr4w5s7"; depends=[assertthat ggplot2]; }; + topdownr = derive2 { name="topdownr"; version="1.10.0"; sha256="0vhlic84vlq8m6npkq97r1vzppfwpyzl7q6mhw2g6kjaglp0gkyh"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; + trackViewer = derive2 { name="trackViewer"; version="1.24.1"; sha256="0hsqkxckjby9zidcsqplc5cync4r44akn3al2ff4iw6m2fjsf78b"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rgraphviz Rsamtools rtracklayer S4Vectors scales]; }; + tracktables = derive2 { name="tracktables"; version="1.22.0"; sha256="1r8i05wak92s9cq7jg9s5kdyx2yix973d6rpav2lc9ngnqaa485d"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; + tradeSeq = derive2 { name="tradeSeq"; version="1.2.01"; sha256="1jqy2xn58j89lfsah9gvkphq9a5a8s7h6g5025r13n7ksh3whfbp"; depends=[Biobase BiocParallel clusterExperiment dplyr edgeR ggplot2 igraph magrittr mgcv monocle pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble]; }; + transcriptR = derive2 { name="transcriptR"; version="1.16.0"; sha256="0wy5jdfivbr1wfcpi56srn7xc0gg7iz3jq21k50z48zr8f3vmmbp"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; + transcriptogramer = derive2 { name="transcriptogramer"; version="1.10.0"; sha256="13bjcs3wl4ky5b51p9lvlhn2a3472shkim6jjy5jhh23njvynnq1"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; + transite = derive2 { name="transite"; version="1.6.1"; sha256="0x6490avcmxkmilsmw6q4vq79q4xfvf9xsh75mibza6cx68f8nw9"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp RcppArmadillo scales TFMPvalue]; }; + traseR = derive2 { name="traseR"; version="1.18.0"; sha256="0hd6483s92mby7pdzx8siil1issf1dz13f6yrpi1jzbjw16vcla5"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; + treeio = derive2 { name="treeio"; version="1.12.0"; sha256="1jkd96gqcfnhvx3d4f4ba9r39nxz2fyykc9i1kgl6ac43kcnrhfp"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; + trena = derive2 { name="trena"; version="1.10.2"; sha256="06d561sj2x3n9lcz9pjzrljk5lqdc4c76h27fpqjm9h2iwkkc02x"; depends=[AnnotationDbi BiocParallel biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr xgboost]; }; + triform = derive2 { name="triform"; version="1.29.0"; sha256="089b7f6dwpi9abj0ncswbi4s30k45996zb99sh43avw6jcb6qj60"; depends=[BiocGenerics IRanges yaml]; }; + trigger = derive2 { name="trigger"; version="1.34.0"; sha256="01baq975bb34v0ip5hygm2l2bqwahh4dwaqwhfkfazrrcqgl2yd3"; depends=[corpcor qtl qvalue sva]; }; + trio = derive2 { name="trio"; version="3.26.0"; sha256="0p0drzajv52jgkspklzwp8x3gfx3i0qcpirxpiw12z0l6npdkjxp"; depends=[LogicReg siggenes survival]; }; + triplex = derive2 { name="triplex"; version="1.28.0"; sha256="1aadf8b24pxnqn738nj6xyjr6zn496r507ypkhwvzir06ilmjp5k"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; + tscR = derive2 { name="tscR"; version="1.0.1"; sha256="10r7dpsdiz3qg17xjc83amfsqlhgj367lwd7axpbzh4906q4jcp1"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges kmlShape knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; }; + tspair = derive2 { name="tspair"; version="1.46.0"; sha256="1j46ws31rnlazi9diijb20hqbf6bmaca8fsqqx8iy6xgkvpv6cqj"; depends=[Biobase]; }; + tweeDEseq = derive2 { name="tweeDEseq"; version="1.34.0"; sha256="1xmh63nb407nvkrdgxp2gav09496pxaadw482gcbs02qk45lah42"; depends=[cqn edgeR limma MASS]; }; + twilight = derive2 { name="twilight"; version="1.64.0"; sha256="1hq28bskrz4fyzcfy0zz2vjbn1dz2y3yks5rcprnq6gjhy0dgv7f"; depends=[Biobase]; }; + twoddpcr = derive2 { name="twoddpcr"; version="1.12.0"; sha256="0i2084pqswhcwr8ldkw3f9d3phwi0rq5jl6b6xw7fzlmifa0l1gb"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; + tximeta = derive2 { name="tximeta"; version="1.6.2"; sha256="13wqkmqbjlw970fjmqng3c8ii6fhram30j9ajqih2m5ywfadswsa"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix rappdirs S4Vectors SummarizedExperiment tibble tximport]; }; + tximport = derive2 { name="tximport"; version="1.16.1"; sha256="1x9959lkjl2h869rgd1b30q1idxzjkr1fyqbpndqk3kbi4q2gr40"; depends=[]; }; + uSORT = derive2 { name="uSORT"; version="1.14.0"; sha256="1qsgbr4ljngl4qjdvrx7plj81alxyaqnbzy94w44agxngl8y44z6"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; + unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.24.0"; sha256="1l9gxq3askr3cz2a4bqsw7vjr1agivzvx651cblkygv57x08zf81"; depends=[BiocGenerics HTqPCR]; }; + universalmotif = derive2 { name="universalmotif"; version="1.6.3"; sha256="1iw2yq0cfpdq6fnng61x8w7z8j0qwz9x4y6n2jv641xjwpv5drdd"; depends=[ape BiocGenerics Biostrings ggplot2 ggseqlogo ggtree MASS processx Rcpp RcppThread Rdpack rlang S4Vectors yaml]; }; + variancePartition = derive2 { name="variancePartition"; version="1.18.3"; sha256="1jrlhi2c5ibvq8a41g5hwdq4kk4rdd7m464rz5767zaaci7l2ay0"; depends=[Biobase BiocParallel colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS pbkrtest progress reshape2 scales]; }; + vasp = derive2 { name="vasp"; version="1.0.0"; sha256="1zvby4m66q61d6mjh9hlfhr2sf9iy3g83xwjd7fbxcj5vlp86piv"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors Sushi]; }; + vbmp = derive2 { name="vbmp"; version="1.56.0"; sha256="0vgskhxmgdfwk3dvmsh62x4sw2rqdhcckjbifbj5s8dv636jf5w8"; depends=[]; }; + vidger = derive2 { name="vidger"; version="1.8.0"; sha256="1qxxsqpc11fd211f4p0hzrjl7y8n5s7si1clv4hp0x4h5g7b3z0s"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; + viper = derive2 { name="viper"; version="1.22.0"; sha256="0gy47aafrh0vs00p5ifwnygc3cf9vsa3nl1gk5ycnd12p1h1sn6r"; depends=[Biobase e1071 KernSmooth mixtools]; }; + vsn = derive2 { name="vsn"; version="3.56.0"; sha256="1k82dikrv1gcync5y1131wg7z1kxv2z2jl4nndg20bixc3398h58"; depends=[affy Biobase ggplot2 lattice limma]; }; + vtpnet = derive2 { name="vtpnet"; version="0.28.0"; sha256="1074qq8344jxzma3d2sk8rlv6ss3p5hsll0yd9nbaark2yl7gwkr"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; + vulcan = derive2 { name="vulcan"; version="1.10.0"; sha256="1r2miwfz6dz2wgj3yklnnj5fxnrhcaf0fb6z8lc4m9llfcazbs60"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; + waddR = derive2 { name="waddR"; version="1.2.0"; sha256="0vdmvw4n0jglhnikv5z5np4nxn0x40aqlsarpigr1gakm66srh5v"; depends=[arm BiocFileCache BiocParallel Rcpp RcppArmadillo SingleCellExperiment]; }; + wateRmelon = derive2 { name="wateRmelon"; version="1.32.0"; sha256="1c3a6bq3ggmv8kmdfrgiar6nwgircgzjrbgd9z9dqiin7j13gxwn"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; + wavClusteR = derive2 { name="wavClusteR"; version="2.22.0"; sha256="0204czqjmkwhd6gznwxzb0vj3dg3aif628g8c30085aa2jljn9bk"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; + weaver = derive2 { name="weaver"; version="1.54.0"; sha256="16dx8capljv0m23mrsxg53hvn2yhx6b29mqsgmha671pj9hyrx0f"; depends=[codetools digest]; }; + webbioc = derive2 { name="webbioc"; version="1.60.0"; sha256="16376ya5a5x2hwkl1v9y4r7np1drdwm912knnqg2dn90zmrdwr5f"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; + weitrix = derive2 { name="weitrix"; version="1.0.0"; sha256="1wy2s2jgwy0gzhs3q4m1g0djmn3wxmzndxw7w460za3k2yfsh067"; depends=[assertthat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dplyr ggplot2 limma purrr reshape2 RhpcBLASctl S4Vectors scales SummarizedExperiment]; }; + widgetTools = derive2 { name="widgetTools"; version="1.66.0"; sha256="0lrdpsgm9r7yfyyj5crvb7px4hrghxhmiic4iissz40slbfyvilx"; depends=[]; }; + wiggleplotr = derive2 { name="wiggleplotr"; version="1.12.1"; sha256="1wknigh1md3w4h68caqlpq945maipdkpmw10hc2rlx4nbbpcnawp"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; + xcms = derive2 { name="xcms"; version="3.10.1"; sha256="1aa11gy1v7kkamv3hsnvdx715q8f1saw9p664j6wifyjj0hx13kn"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MSnbase mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; + xmapbridge = derive2 { name="xmapbridge"; version="1.46.0"; sha256="1qz39p1nr0j245smcng0qzraz7k9j363c48ppp5hdw076cz622m0"; depends=[]; }; + xps = derive2 { name="xps"; version="1.48.0"; sha256="185cvningg3vnzvchfczjph2wlpwfmyhhnfjfigf0gis8a8asar9"; depends=[]; }; + yamss = derive2 { name="yamss"; version="1.14.0"; sha256="00x2lnssgzbmhy5bb2m0f8rq2nsz3lb5xlp2vhkcagza39h3xb0c"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; + yaqcaffy = derive2 { name="yaqcaffy"; version="1.48.0"; sha256="1l0cblh9sfrsil15bjya7d8kkas8bj6klj2w3c4384njdsjsjcf0"; depends=[simpleaffy]; }; + yarn = derive2 { name="yarn"; version="1.14.0"; sha256="1xdjwy1gkfg8lhgq4iwwmbi01903qljjs7yd96cvacmvgn8z6qvx"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; + zFPKM = derive2 { name="zFPKM"; version="1.10.0"; sha256="0scszhfqrgzhglz1a6kxfydq9dx8fqx28j3dypp91y5ah2w6mdys"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; + zinbwave = derive2 { name="zinbwave"; version="1.10.0"; sha256="16giyks17hv6svl9kvhgd2vp14mbg3b3bp7z16bzcjf9adhf0wi5"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; + zlibbioc = derive2 { name="zlibbioc"; version="1.34.0"; sha256="0j1l052jb2cwc1nifxzwknc9csagf4f2d092zs0i95dz0rma89l0"; depends=[]; }; } diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index 21e36b509cf..530f0dcf177 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,9 +4,10 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2020-04-25"; }; +let derive2 = derive { snapshot = "2020-08-19"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; + AATtools = derive2 { name="AATtools"; version="0.0.1"; sha256="08is383xhs2lc9wfffykcwqyl8mwcxfpk3lnvlpkp96hq9m9ikbf"; depends=[doParallel dplyr foreach magrittr]; }; ABACUS = derive2 { name="ABACUS"; version="1.0.0"; sha256="0m1dnkwjr1522l9ddbzzx7ayxvli17sbmk6s28adpmzzjwh2kd1i"; depends=[ggplot2 shiny]; }; ABC_RAP = derive2 { name="ABC.RAP"; version="0.9.0"; sha256="1kdspln17v0krvahcd55vib4dv5azp60b3r1zf489x10qqbp1mxk"; depends=[]; }; ABCanalysis = derive2 { name="ABCanalysis"; version="1.2.1"; sha256="0wac1ksmnxa36v99ca4hv8k0rsh3igwpcllmlv9wf7i9kgqviqwi"; depends=[plotrix]; }; @@ -23,7 +24,7 @@ in with self; { ACSNMineR = derive2 { name="ACSNMineR"; version="0.16.8.25"; sha256="0gh604s8qall6zfjlwcg2ilxjvz08dplf9k5g47idhv43scm748l"; depends=[ggplot2 gridExtra scales]; }; ACSWR = derive2 { name="ACSWR"; version="1.0"; sha256="195vjrkang5cl7gwsna0aq4p0h4jym9xg9yh94bnf8vq6wf8j83n"; depends=[MASS]; }; ACTCD = derive2 { name="ACTCD"; version="1.2-0"; sha256="0mzjxxr2zfdidw8ibh6w8mvpkw3q3nvngqi05g9ind26ckvk053p"; depends=[GDINA R_methodsS3]; }; - ADAPTS = derive2 { name="ADAPTS"; version="0.9.26"; sha256="1s0mwascqlyrqfw672cwrkmaviclmhhxibac98brki7r0fxlk3j2"; depends=[ComICS DeconRNASeq doParallel e1071 foreach missForest nnls pcaMethods pheatmap preprocessCore quantmod WGCNA]; }; + ADAPTS = derive2 { name="ADAPTS"; version="1.0.3"; sha256="12hh0l5zp0camadn0nfj5v3k3wvyp9kmq8hh4bi71g4s4ygaipbk"; depends=[ComICS DeconRNASeq doParallel e1071 foreach missForest nnls pcaMethods pheatmap preprocessCore quantmod ranger WGCNA]; }; ADCT = derive2 { name="ADCT"; version="0.1.0"; sha256="1glf83ydx4v3ld8c4gb9h3jk6srd054bis5l8k57p1ba4fnqnnpp"; depends=[mvtnorm]; }; ADDT = derive2 { name="ADDT"; version="2.0"; sha256="044bb1jw2m8vwk5q8l7rlz4kqphjvy8i9d59rjg0k5q5l9vczfrp"; depends=[coneproj Matrix nlme]; }; ADGofTest = derive2 { name="ADGofTest"; version="0.3"; sha256="0ik817qzqp6kfbckjp1z7srlma0w6z2zcwykh0jdiv7nahwk3ncw"; depends=[]; }; @@ -33,7 +34,9 @@ in with self; { ADPF = derive2 { name="ADPF"; version="0.0.1"; sha256="1n7302xx77ngvp9i2h582i1mqslzllcdr0bn3pl2zk9jd8k97p7n"; depends=[]; }; ADPclust = derive2 { name="ADPclust"; version="0.7"; sha256="0s47cpsjykn7imsssa9w9b6g9d1sz2yah78yqzxmh0i3lqd757c1"; depends=[cluster dplyr fields knitr]; }; AEDForecasting = derive2 { name="AEDForecasting"; version="0.20.0"; sha256="16q2sn5zzvysyy3r32jnr21pbdkkn0k0sbarni6fdkx7pj27yijn"; depends=[changepoint forecast signal]; }; + AEP = derive2 { name="AEP"; version="0.1.2"; sha256="07a3nlkiqbbwbd59n27sgiinlwsgfpy4mn13h41va97wlvd5zl2b"; depends=[]; }; AER = derive2 { name="AER"; version="1.2-9"; sha256="03al0jfxdbi8sqkav7gz3aqbxm32qjdnh4l93vy1jr3n2h5kjy9v"; depends=[car Formula lmtest sandwich survival zoo]; }; + AEenrich = derive2 { name="AEenrich"; version="1.0.0"; sha256="1rly49n3azga6xbfjgg38387pw9mw92j37k5l7ccczay039597ax"; depends=[dplyr magrittr qvalue]; }; AF = derive2 { name="AF"; version="0.1.5"; sha256="1r87ra55g0qm2s8cgsmdwck93ia2vr8zfab3in45mxm5xc501xgk"; depends=[data_table drgee ivtools stdReg survival]; }; AFM = derive2 { name="AFM"; version="1.2.6"; sha256="0yngk3j1wkamqzrwibn2csbn61jbdb872n0gi4d3hyhgilqzwbwf"; depends=[data_table dbscan fftwtools fractaldim ggplot2 gridExtra gstat igraph mixtools moments plyr png pracma rgl scales shiny shinyjs sp stringr]; }; AFheritability = derive2 { name="AFheritability"; version="0.1.0"; sha256="03w0a4z2x539ykyzdxm1mfqkhzz03cg0aqvgi062jrrm5m6f57ix"; depends=[ggplot2 mvtnorm reshape2 shiny]; }; @@ -42,8 +45,8 @@ in with self; { AGSDest = derive2 { name="AGSDest"; version="2.3.2"; sha256="0f3qchvdi2n1cr8ipjj332dw8hdza58dvfk21p0c6bhmxzg7f71i"; depends=[ldbounds]; }; AGread = derive2 { name="AGread"; version="1.1.1"; sha256="0ar0cnlaxxmvn2gdydmm9vr45xjhx06kky556d17l93k0xwfvzm3"; depends=[anytime binaryLogic data_table DescTools dplyr GGIR lubridate magrittr PAutilities Rcpp reshape2 rlang seewave stringr]; }; AHM = derive2 { name="AHM"; version="1.0.1"; sha256="00r1rn7d64a18rckbxvla5yapqv00p9ajxv72fx7s6p80kfal89w"; depends=[devtools dplyr glmnet Matrix mixexp plgp quadprog tibble tidyr]; }; - AHMbook = derive2 { name="AHMbook"; version="0.1.4"; sha256="1cxyk420pzhh1scagxjmpm328xrcc1mpdrrch92yfgbgx09zkr4c"; depends=[coda plotrix RandomFields raster sp unmarked]; }; - AICcmodavg = derive2 { name="AICcmodavg"; version="2.2-2"; sha256="0kpdl31wmwk5i4cqcwlm66c9s0c2b793army9dx50hdgrrzqc0na"; depends=[lattice MASS Matrix nlme survival unmarked VGAM xtable]; }; + AHMbook = derive2 { name="AHMbook"; version="0.2.0"; sha256="1m3xfvaqzgl3vjdcsrbrf7alzm7sxqda47pzks8qgdddsc9hcj8n"; depends=[coda mvtnorm plotrix RandomFields raster sp spdep unmarked]; }; + AICcmodavg = derive2 { name="AICcmodavg"; version="2.3-0"; sha256="092y9q80sql90nfpplm0kfpzs64nclwv4jfqzp79vgj9qprwyssd"; depends=[lattice MASS Matrix nlme survival unmarked VGAM xtable]; }; AID = derive2 { name="AID"; version="2.5"; sha256="0il6qjv1gcbxdf1lknsfij4vxzc31qyp359abqzdvkzyxwgbbzsy"; depends=[ggplot2 MASS nortest psych tseries]; }; AIG = derive2 { name="AIG"; version="0.1.9"; sha256="1jnnfmcwxcv4fsdcz7jb2lgczxdwrq3qxg2bhsh1610iwz4gzii7"; depends=[dplyr magrittr mgcv rgl]; }; AIM = derive2 { name="AIM"; version="1.01"; sha256="11lkfilxk265a7jkc1wq5xlgxa56xhg302f1q9xb7gmjnzdigb21"; depends=[survival]; }; @@ -56,18 +59,16 @@ in with self; { ALTopt = derive2 { name="ALTopt"; version="0.1.2"; sha256="1nbbvniramajg6k83xqgx7r0abjrfja8zz0y3g3j8qmvbcqmjx13"; depends=[cubature lattice]; }; ALassoSurvIC = derive2 { name="ALassoSurvIC"; version="0.1.0"; sha256="0q02rz947bp6i7sbb5nzxq8ky74iprdnpbwnmnn7vg29vhca4b09"; depends=[Rcpp]; }; AMAP_Seq = derive2 { name="AMAP.Seq"; version="1.0"; sha256="0z0rrzps6rm58k4m1ybg77s3w05m5zfya4x8ril78ksxsjwi3636"; depends=[]; }; - AMCP = derive2 { name="AMCP"; version="1.0.0"; sha256="0qb5vcg351jd0ss17zqx6vvyin38qr4dbvc05xc5z8rbca8z6cap"; depends=[]; }; + AMCP = derive2 { name="AMCP"; version="1.0.1"; sha256="14fbb2p4dbgi7i31xxavrldw4wnd4cjjh56ys63rivkswi1hhzj2"; depends=[]; }; AMCTestmakeR = derive2 { name="AMCTestmakeR"; version="1.0.0"; sha256="1vgncc61gmqhax2a7072jb36bzkycv80xqihkr5qs8jxnqqkndxd"; depends=[]; }; AMGET = derive2 { name="AMGET"; version="1.0"; sha256="18wdzzg5wr7akbd1iasa4mvmy44fb2n5gpghwcrx80knnicy3dxq"; depends=[]; }; - AMIAS = derive2 { name="AMIAS"; version="1.1.0"; sha256="08scimlbr22cjr6fqi13rsvpc52sp4psnhrwir5pfl6qcpl1k22j"; depends=[limSolve Matrix zoo]; }; AMModels = derive2 { name="AMModels"; version="0.1.4"; sha256="18h075bzk8s75b3zmjd0x8c6dpl40445d4kv8n0p4ldnx80b1aha"; depends=[unmarked]; }; AMOEBA = derive2 { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; }; AMORE = derive2 { name="AMORE"; version="0.2-16"; sha256="0vw6hhykg1r6xxja6d4zb2y00x7pfkmhcq9xkidz8p4arinb7xnl"; depends=[]; }; AMPLE = derive2 { name="AMPLE"; version="0.0.2"; sha256="0j19f8rl7gkads4n52l5gfc5k7dx27sswzrypwl7dnxhfp4ivql7"; depends=[dplyr ggplot2 shiny shinyjs tidyr wesanderson]; }; - AMR = derive2 { name="AMR"; version="1.1.0"; sha256="0d157469rkpbxq7b53ibmz84vr6kcf896npn7w1vndfi5rjdlvb4"; depends=[backports cleaner crayon data_table dplyr ggplot2 knitr microbenchmark pillar R6 rlang tidyr vctrs]; }; + AMR = derive2 { name="AMR"; version="1.3.0"; sha256="1qjdlrpx3g6011pylmdsy3vvv00xvq0vz4f1x8700daxipsnahwy"; depends=[]; }; ANN2 = derive2 { name="ANN2"; version="2.3.3"; sha256="12l02fnnfa42qy4w1bv2zr963k61xn7mbpj9rycdzi8wl18hxrb8"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 testthat viridisLite]; }; ANOM = derive2 { name="ANOM"; version="0.5"; sha256="14nfy9xplbabfprwxz5fvx26nmqhp657vr6d90dc8vk8ds63ckiz"; depends=[ggplot2 MCPAN multcomp nparcomp SimComp]; }; - ANOVA_TFNs = derive2 { name="ANOVA.TFNs"; version="1.0"; sha256="0dwspvxj2gzyvxsd9xyhv47n1hjlqa7z9qza4h3hn1xda12vkjly"; depends=[FuzzyNumbers]; }; ANOVAIREVA = derive2 { name="ANOVAIREVA"; version="0.1.0"; sha256="04z2g79nnh5yhn4aqw0i7ck2b1z5dbasf1zp1sj6rjjrp9aqmaa6"; depends=[car dplyr ggplot2 plotly rmarkdown shiny]; }; ANOVAShiny = derive2 { name="ANOVAShiny"; version="0.1.0"; sha256="1z8wi8c8j3rlchfk1vx101qz1r9j2jl5lfh72y5lqsisqxl2fyyz"; depends=[DescTools dplyr HH rhandsontable rmarkdown shiny]; }; ANOVAreplication = derive2 { name="ANOVAreplication"; version="1.1.4"; sha256="0rq4aphjmqrr4pm55vpc8qr4rghqkmlsqsvxzarx3kmr3aqlmqg8"; depends=[quadprog shiny]; }; @@ -80,21 +81,20 @@ in with self; { APSIMBatch = derive2 { name="APSIMBatch"; version="0.1.0.2374"; sha256="0j44ijq1v1k60lka9nmw8m1jfjw7pidny9bvswqy5v82gzmwl29d"; depends=[]; }; APfun = derive2 { name="APfun"; version="0.1.4"; sha256="0k4m3zwxcjfb1y4njig6yyjqzsvqi99zmglbfpvp65s829zxd881"; depends=[maptools raster rgdal sp]; }; APtools = derive2 { name="APtools"; version="6.8.8"; sha256="171aydyd7s8qll7djl4ysy596wxdf5wfwpqwfi14jjglc9r9qrrr"; depends=[cmprsk survival]; }; - AQLSchemes = derive2 { name="AQLSchemes"; version="1.6-9"; sha256="0wv2w8nwkfx5j4ds2azasxwy8mafxaxj6pfdkqkf9n57w2q3i1bj"; depends=[]; }; - AQuadtree = derive2 { name="AQuadtree"; version="1.0.0"; sha256="159p1cymvgf8grpnkgkf6nind2kv6c62aa96qb32aiayrgrm4y4c"; depends=[dplyr sp]; }; + AQLSchemes = derive2 { name="AQLSchemes"; version="1.7-1"; sha256="10j8qh7m975666ipgdvzrjiraqqb5rn8qj4w76s3ijl83y0v5j3v"; depends=[]; }; + AQuadtree = derive2 { name="AQuadtree"; version="1.0.1"; sha256="0k9457xyhl8h3jhkn3py48ppylyhzm466ap9rzcy6l56g16vclyk"; depends=[dplyr sp]; }; AR = derive2 { name="AR"; version="1.1"; sha256="1wn4g2997c4vc3mzq2pv8ld0ryp0i78v4zlqqryvhshxgnz4f2pr"; depends=[DISTRIB]; }; - AR1seg = derive2 { name="AR1seg"; version="1.0"; sha256="0v9adx5wj9r4jwl3bqqmj0byiqfp585jz013qfqrq601wj8v4zi3"; depends=[Segmentor3IsBack]; }; ARCensReg = derive2 { name="ARCensReg"; version="2.1"; sha256="05zjk1wxqfigzg80lvx1940a059jfdr9zbzgzmz2n01glj1lvj63"; depends=[msm mvtnorm numDeriv tmvtnorm]; }; + ARCokrig = derive2 { name="ARCokrig"; version="0.1.1"; sha256="0l7z23k4bc2s295cvm3gs8kgkaawgq8g0j0r5jz1c2q2cdadh68q"; depends=[ggplot2 mvtnorm Rcpp RcppArmadillo RcppEigen]; }; ARDL = derive2 { name="ARDL"; version="0.1.0"; sha256="08hjxq961jq46kr6fqpjzv9c1sq63amqm0lr40p4wjl7mpf93xzm"; depends=[aod dplyr dynlm lmtest msm stringr zoo]; }; ARHT = derive2 { name="ARHT"; version="0.1.0"; sha256="1fz81a202r8vk655dg6a03zfq3gfkimqjvmc95k3j02xz0iv58kn"; depends=[]; }; ARIbrain = derive2 { name="ARIbrain"; version="0.2"; sha256="18c7yxkrnqh18gcfzvdc5wqig6ywdmjcy8rlz0fdj3b8fb84dfpr"; depends=[hommel plyr RNifti]; }; AROC = derive2 { name="AROC"; version="1.0-2"; sha256="1a7nxspq9kbzji417mr49i0s19ms8wyq48qz7rnlw1mrkipl4p6d"; depends=[Hmisc MASS Matrix moments nor1mix np spatstat]; }; ARPobservation = derive2 { name="ARPobservation"; version="1.2.0"; sha256="1kgflalpymbsfzwg4c70mdxgrbsg8r8z44433v3y9rymhfyq9nmj"; depends=[]; }; ART = derive2 { name="ART"; version="1.0"; sha256="186w1ivj5v3h906crl953qxgai5wiznaih83dgvwgnmabs9p1wvk"; depends=[car]; }; - ARTIVA = derive2 { name="ARTIVA"; version="1.2.3"; sha256="1jdvsslc8parz7wibcv51fx62brl2mc6i482hz43j1npsms2z1hl"; depends=[gplots igraph MASS]; }; ARTP2 = derive2 { name="ARTP2"; version="0.9.45"; sha256="12nqxry2jkl1n07rbms38mrnp39cn00d0h272d9f1z5x883flv62"; depends=[data_table Formula]; }; ARTool = derive2 { name="ARTool"; version="0.10.7"; sha256="1qk029q5ikz33s0d1gpywdb54ljvdlyxkb9v6zrc86f5ixcc7dnd"; depends=[car dplyr lme4 magrittr plyr]; }; - ARpLMEC = derive2 { name="ARpLMEC"; version="1.0"; sha256="0irgyf8acg1qn60npchvs258d0cf6cxm53xw0s8qg8iyqns52p75"; depends=[gmm lmec MASS Matrix mnormt mvtnorm numDeriv sandwich tmvtnorm]; }; + ARpLMEC = derive2 { name="ARpLMEC"; version="1.1"; sha256="1arn9cks6jbj0rk1r915bw92ac70jfk2b13zwgk78npxbwrnm80x"; depends=[gmm lmec MASS Matrix mnormt mvtnorm numDeriv sandwich tmvtnorm]; }; ASGS_foyer = derive2 { name="ASGS.foyer"; version="0.2.1"; sha256="0f0bl1fxda012d8pgqpaqb80m0nn490xih3ddscfqgb87zgrp4sx"; depends=[sp]; }; ASIP = derive2 { name="ASIP"; version="0.4.9"; sha256="06f1nvy920vyx3bmdi77mwvfsn32xsfxaslhagnf1zh652vfkbwi"; depends=[raster rgdal stringr]; }; ASMap = derive2 { name="ASMap"; version="1.0-4"; sha256="0xnrl8jhbvbc789w5gc9dz7j7gzc7wsc94a3d2wdplrmxn186nrb"; depends=[fields gtools lattice qtl RColorBrewer]; }; @@ -105,7 +105,7 @@ in with self; { AST = derive2 { name="AST"; version="0.1.0"; sha256="0z5dw5qw0i61v4796ms7pp66f9y4ylxrcls31ixzcmkklh3rcnp3"; depends=[]; }; ATE = derive2 { name="ATE"; version="0.2.0"; sha256="1i46ivb7q61kq11z9v1rlnwad914nsdjcz9bagqx17vjk160mc0a"; depends=[]; }; ATR = derive2 { name="ATR"; version="0.1-1"; sha256="0via7zm3byzbdgrfw351fqvx0g5cj2z31bqfwh7kr99nqgjh0dyn"; depends=[partykit]; }; - ATmet = derive2 { name="ATmet"; version="1.2"; sha256="047ibxxf5si45zw22zy8a1kpj36q0pd3bsmxwvn0dhf4h65ah0zz"; depends=[DiceDesign lhs metRology msm sensitivity]; }; + ATmet = derive2 { name="ATmet"; version="1.2.1"; sha256="17lzb4qnxgvlwy5zaz250mb0c4ayk509700k8mj8zf4dgv51kxa3"; depends=[DiceDesign lhs metRology msm sensitivity]; }; AUC = derive2 { name="AUC"; version="0.3.0"; sha256="0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7"; depends=[]; }; AUCRF = derive2 { name="AUCRF"; version="1.1"; sha256="00d7jcg2dyvf7sc9w7vxxd85m7nsbcmfqsavrv236vxfpfc9yn7i"; depends=[randomForest]; }; AUtests = derive2 { name="AUtests"; version="0.98"; sha256="0m2nl55qfwfzlf92f43b9q75xqvrlx7qzcz6qlnjbjcr80s0qj9q"; depends=[logistf]; }; @@ -120,10 +120,12 @@ in with self; { AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-6"; sha256="1z3rmln63ki2kik9kinbwr9qhr32ggbmh4mm3xqy6di119n47ca9"; depends=[]; }; AcousticNDLCodeR = derive2 { name="AcousticNDLCodeR"; version="1.0.2"; sha256="1fgzgwanpv2pzy74xdk3hamc44p8qch467wh163dxby8jr9ik0sb"; depends=[seewave tuneR zoo]; }; AcrossTic = derive2 { name="AcrossTic"; version="1.0-3"; sha256="03180h79jhjd66ibrnsfp3yyp2jlfysp7cymw46phzj2palghsc0"; depends=[lpSolve treeClust]; }; + ActCR = derive2 { name="ActCR"; version="0.1.0"; sha256="1rrbn0l0yy8nlp9ghjya1gh0c7brbypazdy934209h3kqm17cgzv"; depends=[cosinor cosinor2 dplyr zoo]; }; ActFrag = derive2 { name="ActFrag"; version="0.1.1"; sha256="08r3gwjz4fkyy85dxqix0ffm5xyq45032qv3snnzxnlqxslxbqn1"; depends=[accelerometry dplyr ineq survival tidyr]; }; Actigraphy = derive2 { name="Actigraphy"; version="1.4.0"; sha256="0bpmvszzv5fm72nar3wgnmfl5am7znqfajmlbv38ihkbi7jbwk20"; depends=[fda]; }; ActiveDriver = derive2 { name="ActiveDriver"; version="1.0.0"; sha256="10c7ga48fwvpd5mc4dqiyw4kc2l0iz5qn4hg7xk15r1qmm5rsipa"; depends=[MASS]; }; ActiveDriverWGS = derive2 { name="ActiveDriverWGS"; version="1.0.1"; sha256="08l9dj8d3cd74z1dqn8n4yqykwvqjxsfa067wnxyh7xnfvvnm5v1"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicRanges IRanges plyr S4Vectors]; }; + ActivePathways = derive2 { name="ActivePathways"; version="1.0.2"; sha256="1hxy760x141ykrpqdbfldq4ggj1svj3lsrpwi4rb2x7r4lna937l"; depends=[data_table ggplot2]; }; AcuityView = derive2 { name="AcuityView"; version="0.1"; sha256="0f0iclmnwdc8ixiiai4svk4x1g3pjy7dhm3cm58fv6ckx12d3d2l"; depends=[fftwtools imager plotrix]; }; AdMit = derive2 { name="AdMit"; version="2.1.5"; sha256="1gsskg3ayzyz0wa4abi20zzmkbnal6igwd6m7rafvpgzlffms1r9"; depends=[mvtnorm]; }; AdaSampling = derive2 { name="AdaSampling"; version="1.3"; sha256="1c8dh8lxyb076317n4qk2g3qv5j4mc1dszbh3k1p2b0nxiprqk5i"; depends=[caret class e1071 MASS]; }; @@ -134,7 +136,8 @@ in with self; { AdaptGauss = derive2 { name="AdaptGauss"; version="1.5.6"; sha256="076jjnqp4ayq4kh95qns4kfzfvl6mjllhsq6hfp66bww7w976xxh"; depends=[DataVisualizations pracma Rcpp shiny]; }; AdaptiveSparsity = derive2 { name="AdaptiveSparsity"; version="1.6"; sha256="0imr5m8mll9j6n4icsv6z9rl5kbnwsp9wvzrg7n90nnmcxq2cz91"; depends=[MASS Matrix Rcpp RcppArmadillo]; }; AdequacyModel = derive2 { name="AdequacyModel"; version="2.0.0"; sha256="0amp6ic1wylk24sp9wpx3ci38njj7b9qjqfp89j39hkl6kc1q7sq"; depends=[]; }; - AdhereR = derive2 { name="AdhereR"; version="0.5"; sha256="0wma06v02k50j0j8j5k1py3y6mwl8q7bsb288gyn67ms9wgv4fb5"; depends=[clipr colourpicker data_table DBI haven highlight knitr lubridate manipulate readODS readxl RMariaDB RSQLite scales shiny shinyjs shinyWidgets V8 viridisLite]; }; + AdhereR = derive2 { name="AdhereR"; version="0.6.1"; sha256="1h7izwm6fsvd5qi1w0jhf2brf55qcdl203sv7bn1z4gp398iiwc4"; depends=[data_table jpeg lubridate png webp]; }; + AdhereRViz = derive2 { name="AdhereRViz"; version="0.1.0"; sha256="0lb5yral2gf0mjqyqwz2qcd5g2dmsxf590cdqi9f0xss5kwka5j5"; depends=[AdhereR clipr colourpicker data_table DBI haven highlight knitr lubridate manipulate readODS readxl RMariaDB RSQLite rsvg scales shiny shinyjs shinyWidgets V8 viridisLite]; }; AdjBQR = derive2 { name="AdjBQR"; version="1.0"; sha256="14437pyz9v09ighwqvy1lcw0vfp2gaqzs9nzrb1gkfbb8ndzjw7k"; depends=[coda MHadaptive quantreg survival]; }; AdvBinomApps = derive2 { name="AdvBinomApps"; version="1.0"; sha256="1cnmn6c2dyl8qfl7g5sqwbjb52psqxzrj1mbm06zak2y1j7j8f49"; depends=[GenBinomApps rootSolve]; }; AdvDif4 = derive2 { name="AdvDif4"; version="0.7.18"; sha256="1xdbk7w55cb2fh0mqlyrkdpnglrs55kyvvp32anvf2nw3ssrfmy7"; depends=[]; }; @@ -148,20 +151,21 @@ in with self; { AllPossibleSpellings = derive2 { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; }; AlleleRetain = derive2 { name="AlleleRetain"; version="2.0.2"; sha256="0b6h5giskqbjbrk8nf29i75wrhxsjw1c87laiqzrpbp9n717bl20"; depends=[]; }; AlphaPart = derive2 { name="AlphaPart"; version="0.8.1"; sha256="0gmiwx6f1bzyakz6yz9bk25xlys7rlapglrqv5qkmn4l4ddqyhwq"; depends=[directlabels gdata ggplot2 pedigree Rcpp reshape]; }; - AlphaSimR = derive2 { name="AlphaSimR"; version="0.12.1"; sha256="1j7bz54lqh59fnlxcipg0v8iiaqib0prjnhvb0qinzxz0narh7gp"; depends=[BH R6 Rcpp RcppArmadillo]; }; + AlphaSimR = derive2 { name="AlphaSimR"; version="0.12.2"; sha256="0cfz2dh6qdyi8nj81dyy2g26xhwn8l6cfr0r7q6bm0ci21vmcwl0"; depends=[BH R6 Rcpp RcppArmadillo]; }; AlphaVantageClient = derive2 { name="AlphaVantageClient"; version="0.0.1"; sha256="095m850v945lw7i3qd812p28srdb5hdk9h52zf6bkr166zai1ni0"; depends=[httr xts]; }; Amelia = derive2 { name="Amelia"; version="1.7.6"; sha256="1shvc8x1kmb0cincgggsv5c5w25k36kqvisdqd3ayy5g98vqvh33"; depends=[foreign Rcpp RcppArmadillo]; }; AmericanCallOpt = derive2 { name="AmericanCallOpt"; version="0.95"; sha256="1nhy44j5bmmjsp6g79nrn741rzzxikhdnxk4wwbdj9igcc1bs573"; depends=[]; }; - AmesHousing = derive2 { name="AmesHousing"; version="0.0.3"; sha256="1fr01ka8x8gdnky6cbd2bjlh1lx71gzq440zsknn9kxvf01s6pxm"; depends=[dplyr magrittr]; }; + AmesHousing = derive2 { name="AmesHousing"; version="0.0.4"; sha256="080r0fkmqsdrjgwbmdzacnkmd8py611z54i6r7nzj14r295d5qhk"; depends=[dplyr magrittr]; }; AmigaFFH = derive2 { name="AmigaFFH"; version="0.3.1"; sha256="0mvw5zr7l29fgm6dan285gjnmmzz59a19v8b2w4j035jzbf1vffw"; depends=[tuneR]; }; AmmoniaConcentration = derive2 { name="AmmoniaConcentration"; version="0.1"; sha256="05pnwfji9l9az4jvni6jy7cayzg5pbspz82a63kmj6rgibn4ywvn"; depends=[]; }; - AmostraBrasil = derive2 { name="AmostraBrasil"; version="1.2"; sha256="06y555gl9g89gygrv1rhg8j1bhb38m09mvvw67wvwhdl56j0fqbd"; depends=[foreign RCurl rgdal RJSONIO sp stringr]; }; + AmpGram = derive2 { name="AmpGram"; version="1.0"; sha256="1j5zx6n8cyzh6dnv96234zmlfj90fs9w4vm32xw8iqgvpcviqyz6"; depends=[biogram devtools pbapply ranger shiny stringi]; }; + AmpliconDuo = derive2 { name="AmpliconDuo"; version="1.1.1"; sha256="0vw06x47vc0dqzafgpkn4abdsrhxfs9dq8nnrr2pl49skj5n4hks"; depends=[ggplot2 xtable]; }; AmyloGram = derive2 { name="AmyloGram"; version="1.1"; sha256="1xdi3i3nw4fzj4d040r55f0gid72gy3vbz5nbdrvapl97zk3kp8c"; depends=[biogram ranger seqinr shiny]; }; AnDE = derive2 { name="AnDE"; version="1.0"; sha256="1yil8ab50wvlqmdla9kmfba8vfgy5r694r6igb58s6vnmld78yf2"; depends=[discretization foreign functional stringr]; }; AnaCoDa = derive2 { name="AnaCoDa"; version="0.1.3.0"; sha256="1aps8fnh2d4vw5c9ypmgqnvwqzkjjfrmm7wq4xcy6lmlqks35zdv"; depends=[mvtnorm Rcpp]; }; AnalyzeFMRI = derive2 { name="AnalyzeFMRI"; version="1.1-21"; sha256="1gn0ixxi42rw8vr4ykl232cmdcc1qqbbivhw3n8f20jgicwg8x06"; depends=[fastICA R_matlab tkrplot]; }; - AnalyzeTS = derive2 { name="AnalyzeTS"; version="2.3"; sha256="0nvw5x8hjjhhhip6qv6qybbmzmim7c5k2a68zgw6hfqgvi6b3k0b"; depends=[MASS TSA tseries TTR urca]; }; AncestryMapper = derive2 { name="AncestryMapper"; version="2.0"; sha256="1fr2y1a5rn7rq8aly94f618kywix32jwysi70nfhaqx8hf4zzprb"; depends=[svd]; }; + Andromeda = derive2 { name="Andromeda"; version="0.3.2"; sha256="1irkfhxz12m343a8lw0g0r6xvmgzm636kqcv1wygmdzzz9mf554c"; depends=[cli DBI dbplyr dplyr pillar RSQLite tidyselect zip]; }; AnglerCreelSurveySimulation = derive2 { name="AnglerCreelSurveySimulation"; version="1.0.2"; sha256="1nhd0i30g5wb5jh96gfaa0lgnbnj0m2vy4gz7v2c3142396zalnx"; depends=[dplyr ggplot2]; }; AnimalHabitatNetwork = derive2 { name="AnimalHabitatNetwork"; version="0.1.0"; sha256="1bhqypkiw5v9w26jbdmhndqj5hjfmf7zwivrq2hgs0zcjxwa8gfn"; depends=[ggplot2 igraph]; }; AnnotLists = derive2 { name="AnnotLists"; version="1.2"; sha256="1g2khb2ggniwg2zcjamsm3bxyrl2zabvk540b5vyy9am9k83m1g9"; depends=[]; }; @@ -169,7 +173,7 @@ in with self; { AnnuityRIR = derive2 { name="AnnuityRIR"; version="1.0-0"; sha256="0yvfqzwhm5nhywfhzkxkfm07c0qi6z21j1cdaypz89qn567aj1d9"; depends=[actuar EnvStats fitdistrplus mc2d tseries]; }; AntAngioCOOL = derive2 { name="AntAngioCOOL"; version="1.2"; sha256="1krwms0y3xppc2y4m0az51wcbh4jq7mlr0jwinp66w8gh4k3qnp2"; depends=[caret rJava rpart RWeka]; }; AntWeb = derive2 { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; }; - AnthropMMD = derive2 { name="AnthropMMD"; version="3.0.1"; sha256="0f2j4nwni87r11zav4lvy0c8k9v6yrk2li3vls2xa02nlci64x26"; depends=[plotrix scatterplot3d shiny smacof]; }; + AnthropMMD = derive2 { name="AnthropMMD"; version="3.1.0"; sha256="10ms5akc2r9dmcm8dd8bn7qn0bq71c270yhs61981n4mxsvgjmnr"; depends=[plotrix scatterplot3d shiny smacof]; }; Anthropometry = derive2 { name="Anthropometry"; version="1.14"; sha256="0y52g15pcgs4b68sfczn6nnpdqsialsb4mq3wb9a2gba7qdcf76y"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; }; Aoptbdtvc = derive2 { name="Aoptbdtvc"; version="0.0.2"; sha256="1bygvf8vgzz3wa4485x2xxpk784zmw1nwsjjjysm12brrldh8zzh"; depends=[lpSolve MASS]; }; ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.3"; sha256="0h4snigh1yhp34vw52h4b6qbh9c4cvwz2cx8fwvbnw6lslmg5cgv"; depends=[doParallel foreach stringr]; }; @@ -179,20 +183,19 @@ in with self; { ArCo = derive2 { name="ArCo"; version="0.3-1"; sha256="1afjdmcalx3m19jlvqs83fg5qlds59l5zzg3pzk13qk31r0hz7mk"; depends=[boot glmnet Matrix]; }; ArDec = derive2 { name="ArDec"; version="2.0"; sha256="14niggcq7xlvpdhxhy8j870gb11cpk4rwn9gwsfmcfvh49g58i80"; depends=[]; }; ArchaeoChron = derive2 { name="ArchaeoChron"; version="0.1"; sha256="1qma2432mm73h72g9ah1k02wlcb6yrhc6mpai9nj7v58s126ffxn"; depends=[ArchaeoPhases Bchron coda rjags]; }; - ArchaeoPhases = derive2 { name="ArchaeoPhases"; version="1.4"; sha256="1wdr72w0qfh165v5prgxx0py7344v8rw03rhnh7pi5rwd5nyxvhv"; depends=[coda DT ggalt ggplot2 ggthemes hdrcde readr shiny shinythemes toOrdinal]; }; - ArfimaMLM = derive2 { name="ArfimaMLM"; version="1.3"; sha256="0s5igf703zzvagsbdxf5yv4gn0vdq51b7fvbc8xkgvlmv91yy372"; depends=[fracdiff fractal lme4]; }; + ArchaeoPhases = derive2 { name="ArchaeoPhases"; version="1.4.5"; sha256="1i7xpxm8mj1vfn6yc4rz566vssjdvpgi3pnk6xdrbhk83hgi4gn3"; depends=[coda DT ggalt ggplot2 ggthemes hdrcde readr shiny shinythemes toOrdinal]; }; + ArchaeoPhases_dataset = derive2 { name="ArchaeoPhases.dataset"; version="0.1.0"; sha256="1bwfw3azhz4cbcinimj1nnmz04zw4lmn3bh419w73jmcswqrym0n"; depends=[]; }; ArgumentCheck = derive2 { name="ArgumentCheck"; version="0.10.2"; sha256="0mgx7mzbg2wynixcf9hvs0i9p4zka7c3chrfvjmvvvwwgsy24hkc"; depends=[]; }; Arothron = derive2 { name="Arothron"; version="1.1.1"; sha256="18vman573mss704v5rqa13vq5nwlbdrg1j5b4wc441782znm34y3"; depends=[abind alphashape3d compositions doParallel foreach geometry Morpho rgl Rvcg stringr vegan]; }; ArrayBin = derive2 { name="ArrayBin"; version="0.2"; sha256="0jlhcv2d7pmqi32w71nz063ri1yj4i4isr3msnw7ckzvi9r42jwm"; depends=[SAGx]; }; - AsioHeaders = derive2 { name="AsioHeaders"; version="1.12.2-1"; sha256="0ibbw8njqq53d2gvwh604xkmkjc02zf8z30gm0a1d6cx82n0w8h8"; depends=[]; }; + AsioHeaders = derive2 { name="AsioHeaders"; version="1.16.1-1"; sha256="0hp08v6if476745v2mk9k2sp1ikiac94fcnp8v9jdcyx954fqqlq"; depends=[]; }; AssetCorr = derive2 { name="AssetCorr"; version="1.0.3"; sha256="0xcyj9xw895p4j03j9c76k7ylhkmf777akg4m90av12ad05njjbv"; depends=[boot ggplot2 mvQuad mvtnorm numDeriv Rdpack VineCopula]; }; AssetPricing = derive2 { name="AssetPricing"; version="1.0-1"; sha256="0pbb1362dgdipbj3h50ykissl3gdqf1j1mpq53ixprvyc966c5h4"; depends=[deSolve polynom]; }; AssocAFC = derive2 { name="AssocAFC"; version="1.0.2"; sha256="1rjiiir472dnr15xyvpn81s62nf01gl70khr8mrni65ssp5m30fb"; depends=[CompQuadForm]; }; - AssocTests = derive2 { name="AssocTests"; version="0.0-4"; sha256="1fhqzbj4aj4srkiba79w8wdyc7yy701izklxqqa7lsifnca6gn4j"; depends=[cluster combinat fExtremes mvtnorm]; }; + AssocTests = derive2 { name="AssocTests"; version="1.0-0"; sha256="0wlpyl13dxqn50aajz71zhiggqsay2xk2cqxh91pvgf60c291nlp"; depends=[cluster combinat fExtremes mvtnorm]; }; AssotesteR = derive2 { name="AssotesteR"; version="0.1-10"; sha256="0aysilg79vprcyjirqz6c5s1ry1ia92xik3l38qrw1gf3vfli9cw"; depends=[mvtnorm]; }; AsyK = derive2 { name="AsyK"; version="1.5.4"; sha256="0l2d6h1i5bvxizvcjq15z0dhq274qz07fq6hh4j6d6ifm0z34829"; depends=[decon ICV kedd kerdiest KernSmooth ks locfit OSCV sm]; }; AsynchLong = derive2 { name="AsynchLong"; version="2.1"; sha256="111kg1cacqlz4df1lnijybnrifjscjm78ji9p0ia615gacvdcfxa"; depends=[]; }; - AtelieR = derive2 { name="AtelieR"; version="0.24"; sha256="0yialpmbsbx70gvps4r58xg9wvqcril8j8yd61lkkmz4b3195zai"; depends=[cairoDevice gWidgetsRGtk2 partitions proto]; }; AtmRay = derive2 { name="AtmRay"; version="1.31"; sha256="162078jd032i72sgaar9hqcnn1lh60ajcqpsz4l5ysxfkghcxlh8"; depends=[]; }; AurieLSHGaussian = derive2 { name="AurieLSHGaussian"; version="0.2.0"; sha256="0dzwqv396inbx4r6758vr4gip1y42ahavspadgm4xhafvipg73rb"; depends=[flexclust igraph lsa reshape2 stringdist]; }; AutoDeskR = derive2 { name="AutoDeskR"; version="0.1.3"; sha256="1n7c8ris8b517bs1wahpvrhwfbvn2q4jbq01kgiv9lfmkjckzfkc"; depends=[httr jsonlite shiny]; }; @@ -202,15 +205,16 @@ in with self; { Autoplotprotein = derive2 { name="Autoplotprotein"; version="1.1"; sha256="13mxqmhhdiq7mz4m6nx39dsq7x3bm8fsgskswx48vsq6x2k6byxa"; depends=[ade4 plotrix plyr seqinr XML]; }; AutoregressionMDE = derive2 { name="AutoregressionMDE"; version="1.0"; sha256="1dmg0q4sp2d2anzhw2my8xjhpyjsx0kf7r202q5bkw8yr57jnhvr"; depends=[]; }; Autoseed = derive2 { name="Autoseed"; version="0.1.0"; sha256="0xr3sjfccvp8h18jqxzajb2pfn4nm8q9maic6k9zzr15fxvphiy5"; depends=[]; }; - AzureAuth = derive2 { name="AzureAuth"; version="1.2.3"; sha256="0vi5888qvsmdwvzz46wabg2244liwfzyjd13h1d3wvbarzy7m8wf"; depends=[httr jose jsonlite openssl R6 rappdirs]; }; + AzureAuth = derive2 { name="AzureAuth"; version="1.2.4"; sha256="0f0skabl51xv72c3cvj4nd8l686hvqakh0gpghs8fnay1qbh78gg"; depends=[httr jose jsonlite openssl R6 rappdirs]; }; AzureCognitive = derive2 { name="AzureCognitive"; version="1.0.0"; sha256="1yg8fq77fbgf21dg9zq7kkgqyx6ax9ma46yv1nhnvdhc3dpvax5a"; depends=[AzureAuth AzureRMR httr jsonlite]; }; - AzureContainers = derive2 { name="AzureContainers"; version="1.2.1"; sha256="0ihs0wv91y1klzwcbfy44yx12l8rxpa4g2vm2dbd7g9pz172w7hl"; depends=[AzureGraph AzureRMR httr openssl processx R6]; }; - AzureGraph = derive2 { name="AzureGraph"; version="1.1.0"; sha256="0b7bfzvv0115giahs12b0h4qq4fdc5qf5kc8hmvjca6jlgysgvf4"; depends=[AzureAuth httr jsonlite openssl R6]; }; + AzureContainers = derive2 { name="AzureContainers"; version="1.3.0"; sha256="08n878lxwxsp0sra0y44qzwb813rfbpcj6sl779nlkhfmjk66pz8"; depends=[AzureGraph AzureRMR httr openssl processx R6]; }; + AzureGraph = derive2 { name="AzureGraph"; version="1.1.1"; sha256="15l6bl7w8d4kq0kmhywmncyrdx5zmgyprd4m8ikraxk5xkrhf4c2"; depends=[AzureAuth httr jsonlite openssl R6]; }; AzureKeyVault = derive2 { name="AzureKeyVault"; version="1.0.3"; sha256="06lz7cg3f9qrl9nzi54fsx37gm517skjl0jn1fwq4s4b07p4klia"; depends=[AzureAuth AzureGraph AzureRMR httr jose jsonlite openssl R6]; }; - AzureKusto = derive2 { name="AzureKusto"; version="1.0.5"; sha256="0xzrhqysazcwwp5ismf6pi0kyyncwwp4a0p9s47m0gm8fyhz1h7g"; depends=[AzureAuth AzureRMR DBI dplyr httr jsonlite openssl R6 rlang tibble tidyselect]; }; - AzureRMR = derive2 { name="AzureRMR"; version="2.3.2"; sha256="18lr68axnr728mhgydifgrvwj640vyhqhgh9y4ppb2xv5smbxq7n"; depends=[AzureAuth AzureGraph httr jsonlite R6 uuid]; }; - AzureStor = derive2 { name="AzureStor"; version="3.2.0"; sha256="0g5j5kb5kf62md3yjyjm2py823zikhnsdbq51gk66ixnzzily4sc"; depends=[AzureRMR httr mime openssl R6 xml2]; }; - AzureVM = derive2 { name="AzureVM"; version="2.1.1"; sha256="0kls78lbyp5i0dg3a7nz183r7chw1hhwzqyvmp27jhihazls90ij"; depends=[AzureRMR jsonlite R6]; }; + AzureKusto = derive2 { name="AzureKusto"; version="1.0.6"; sha256="02wj1nzbs9l6aapk94p89gahbffmk3gy80l57bd1l0afpw0y3jr8"; depends=[AzureAuth AzureRMR DBI dplyr httr jsonlite openssl R6 rlang tibble tidyselect]; }; + AzureQstor = derive2 { name="AzureQstor"; version="1.0.0"; sha256="0cdzslsb00wpg2di9nm444iwaizk9if4irx2q8gj6hrhn8sp0qn9"; depends=[AzureRMR AzureStor httr openssl]; }; + AzureRMR = derive2 { name="AzureRMR"; version="2.3.5"; sha256="0q0611ddmq7d6hxl6cyrii5mnc019zl6z70r83rmynjymznbjar9"; depends=[AzureAuth AzureGraph httr jsonlite R6 uuid]; }; + AzureStor = derive2 { name="AzureStor"; version="3.2.3"; sha256="137jcv5gm2wd40w787r00y98kby03s7ah8jmk2dxhl1681055ykg"; depends=[AzureRMR httr mime openssl R6 xml2]; }; + AzureVM = derive2 { name="AzureVM"; version="2.2.1"; sha256="08mw3x60xqa6by1mzr0axf3vidwncxli29cd5ss0kvf8pmvlir0z"; depends=[AzureRMR jsonlite R6]; }; AzureVMmetadata = derive2 { name="AzureVMmetadata"; version="1.0.0"; sha256="0k99ncp9zkyxl0r51041rfgq49gb65f5d3yc89d1gg2aqavk3g2y"; depends=[httr openssl]; }; AzureVision = derive2 { name="AzureVision"; version="1.0.1"; sha256="0wfnq77rn10wpj0d3s8mbpybc3dgvjc4f3lhgalabif4h11zgz9c"; depends=[AzureCognitive AzureRMR httr]; }; BACA = derive2 { name="BACA"; version="1.3"; sha256="1vbip7wbzix1s2izbm4058wmwar7w5rv3q8bmj9pm7hcapfi19k0"; depends=[ggplot2 RDAVIDWebService rJava]; }; @@ -222,25 +226,25 @@ in with self; { BALCONY = derive2 { name="BALCONY"; version="0.2.10"; sha256="1wfy0dmwfzd9jp6g92ld8jqzx97grgq4h6dy4y5063vfd9i4slwx"; depends=[Biostrings dplyr progress readr Rpdb scales seqinr]; }; BALD = derive2 { name="BALD"; version="1.0.0-3"; sha256="1azyqami07g3ax60j0ws3d1qha65k0svn2v5c9pisni0qch5xql0"; depends=[lattice logspline rjags]; }; BALLI = derive2 { name="BALLI"; version="0.2.0"; sha256="0qmjwpj56n07dvjwfknqvc02f0y5mlwh2yz4lrw7c4wqgrckcpgi"; depends=[edgeR limma MASS]; }; - BAMBI = derive2 { name="BAMBI"; version="2.2.0"; sha256="1ch74zwv01a42vpvr9irdb2a3ivs1zrgdb907p50pq2lasmqdxah"; depends=[bridgesampling coda future_apply gtools label_switching lattice loo mvtnorm qrng RColorBrewer Rcpp RcppArmadillo rootSolve scales]; }; + BAMBI = derive2 { name="BAMBI"; version="2.3.0"; sha256="0b9zbnb56rzwb8bfv3yq84vzbjr1agcil46xwsjh9zg3vl8jp99h"; depends=[bridgesampling coda future_apply gtools label_switching lattice loo mvtnorm numDeriv qrng RColorBrewer Rcpp RcppArmadillo scales]; }; BAMMtools = derive2 { name="BAMMtools"; version="2.1.7"; sha256="1xpks3in0mj1b82z3ax2k3q06bgr3sj0nhr2dbs2crbvszb8hcp2"; depends=[ape gplots Rcpp]; }; + BANOVA = derive2 { name="BANOVA"; version="1.1.8"; sha256="1xa0mp6m78w07a70ii8cbmlsx0qhqm09pczmwb085f4l6bqc8d16"; depends=[coda rjags rstan runjags]; }; BAREB = derive2 { name="BAREB"; version="0.1.0"; sha256="1h3bgfxbs489cywgblrpl8jjhgs1krimdvv6fryjnc9rhw1mymdr"; depends=[Rcpp RcppArmadillo]; }; - BARIS = derive2 { name="BARIS"; version="1.1.0"; sha256="0ncc1c6bqkh42cgg2pgfwrjypgcb9a08m49hgf6g6h9f30vqqa52"; depends=[data_table downloader dplyr httr janitor jsonlite magrittr memoise miniUI rgdal rio rstudioapi sf shiny stringi stringr XML]; }; + BARIS = derive2 { name="BARIS"; version="1.1.1"; sha256="1h1zrgpn69nvz61567c08vfynmzy70g31a37wp4p6g8wri1hr7xg"; depends=[checkmate data_table downloader dplyr httr janitor jsonlite magrittr memoise miniUI rgdal rio rstudioapi sf shiny stringi stringr XML]; }; BART = derive2 { name="BART"; version="2.7"; sha256="16klaqzp525da6swlcdcr13mjlm88zpqyqnzjk6l4nlcwa3b7z1m"; depends=[nlme nnet Rcpp survival]; }; BAS = derive2 { name="BAS"; version="1.5.5"; sha256="1iakx36r4lnl6xs77m9mfcj5w3mb4g482s2mpzq65v69k10nj8lj"; depends=[]; }; BASIX = derive2 { name="BASIX"; version="1.1"; sha256="18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id"; depends=[]; }; - BASS = derive2 { name="BASS"; version="0.2.2"; sha256="1q3sihp2iv1ikggzgd2k3vh2myz8bz31rzlaavw0n84d0h1zjxy2"; depends=[]; }; + BASS = derive2 { name="BASS"; version="1.2.0"; sha256="00fww6nwfq8di21ja5y4fl2ria5p9a80x58xz43im20iz1f83i28"; depends=[gsl truncdist]; }; BASiNET = derive2 { name="BASiNET"; version="0.0.4"; sha256="0pmn4znqhpav729ai7zr027a7sx6bz2lmlk086crmwm1fnwipqq4"; depends=[Biostrings igraph randomForest rJava rmcfs RWeka]; }; - BAT = derive2 { name="BAT"; version="2.0.1"; sha256="0vc75a0m4my6f1fwciwaf6qhhqr09lc59zgifhhz1188xsrv28h1"; depends=[hypervolume nls2 raster spatstat vegan]; }; - BAYESDEF = derive2 { name="BAYESDEF"; version="0.1.0"; sha256="030xskgqqg0n85mphjv32ks4ysvxb36f6ayy0176gps14jhmhcp7"; depends=[glmnet gWidgets readxl REdaS]; }; + BAT = derive2 { name="BAT"; version="2.1.0"; sha256="1mhspbgn860vkysncz0cd62jgq2i8vr3gzkivmaq04fb2glh36ns"; depends=[hypervolume nls2 raster spatstat vegan]; }; BAYSTAR = derive2 { name="BAYSTAR"; version="0.2-9"; sha256="0crillww1f1jvhjw639sf09lpc3wpzd69milah143gk9zlrkhmz2"; depends=[coda mvtnorm]; }; - BAwiR = derive2 { name="BAwiR"; version="1.2.3"; sha256="0kc4vq2cc6rp2hpy9a9bqmxvfpm9h4k9x7imwa9kgin3didi7vjp"; depends=[Anthropometry dplyr ggplot2 ggthemes hrbrthemes httr lubridate magrittr plyr purrr reshape2 rvest rworldmap scales stringi stringr tibble tidyr xml2]; }; + BAwiR = derive2 { name="BAwiR"; version="1.2.4"; sha256="19iphlhas0d5hyjv00761zbdxx1ijycrnswww5sczr30r5dkacp8"; depends=[Anthropometry dplyr ggplot2 ggthemes hrbrthemes httr lubridate magrittr plyr purrr reshape2 rvest rworldmap scales stringi stringr tibble tidyr xml2]; }; BB = derive2 { name="BB"; version="2019.10-1"; sha256="0kf9sfsm3n036a8a8gjfpc9qdryvadb019kqjh80n1szdv7bdl04"; depends=[quadprog]; }; - BBEST = derive2 { name="BBEST"; version="0.1-6"; sha256="1hvgi3679ixpq0c5qbxhkp1j0953k3lklglgxrq9mz2ry6z9n038"; depends=[DEoptim ggplot2 reshape2 shiny wmtsa]; }; BBI = derive2 { name="BBI"; version="0.3.0"; sha256="167sndfp3776p8n9zdpihc9xhqqi8wygzpl49dzkfj53gwa77rnn"; depends=[vegan]; }; BBMM = derive2 { name="BBMM"; version="3.0"; sha256="1cvv786wf1rr5906qg1di2krrv5jgw3dnyl8z2pvs8jyn0kb3fkj"; depends=[]; }; BBMV = derive2 { name="BBMV"; version="2.1"; sha256="11d4wd1zx99hrhwagw73jkk088rz5vgkjml6mckssc2iqvhj1dc9"; depends=[ape]; }; BBRecapture = derive2 { name="BBRecapture"; version="0.2"; sha256="1w0m8p4mwjsycv9krmsgdyjckic2nwxbyhrz1s2gng2v1h20zvlf"; depends=[HI lme4 locfit secr]; }; + BBcor = derive2 { name="BBcor"; version="1.0.0"; sha256="1acaqpn1q0kvk423hkbnwjq00nd0jg24w8v1ygfhys7mq0hphk04"; depends=[pbapply psych wdm]; }; BBmisc = derive2 { name="BBmisc"; version="1.11"; sha256="1lh1n4bvxzivb5rbz69mvd8xdgr3gr2bnqd68a39sd1530l8r90y"; depends=[checkmate]; }; BCA = derive2 { name="BCA"; version="0.9-3"; sha256="0ksd6b0ykydgdn33x29bwwqkrp23cvdj3imps0l6qs1p4465j5nf"; depends=[car clv flexclust Rcmdr RcmdrMisc rpart]; }; BCA1SG = derive2 { name="BCA1SG"; version="0.1.0"; sha256="14jvi5gn19f72szcnyhfpdld00cc7gyih5qrm4bpzvp553f1svvk"; depends=[logOfGamma Matrix]; }; @@ -250,12 +254,12 @@ in with self; { BCE = derive2 { name="BCE"; version="2.1"; sha256="0dqp08pbq7r88yhvlwgzzk9dcdln7awlliy5mfq18j5jhiy7axiz"; depends=[FME limSolve Matrix]; }; BCEA = derive2 { name="BCEA"; version="2.3-1.1"; sha256="0ppjcbcapmg6j5gdalw1j86w50xwaanvhld9zpzp5fvj8b7f016b"; depends=[dplyr MASS rlang]; }; BCEE = derive2 { name="BCEE"; version="1.3.0"; sha256="19sg84qw44pa7dmr2l656zv988cj6ap6069l53vza5ynqswckbw2"; depends=[BMA boot leaps Rcpp RcppArmadillo]; }; - BCHM = derive2 { name="BCHM"; version="0.99"; sha256="1az0njkq30762n5khbm6hlj1knqi4sp723qihwnmkgn8cai130y3"; depends=[cluster coda crayon knitr plyr rjags]; }; - BCRA = derive2 { name="BCRA"; version="2.1"; sha256="0n1f2qcwca7lb90qmim5dc3wj3hf5b31nh0xiw64k1cv8lhqc0mz"; depends=[]; }; + BCHM = derive2 { name="BCHM"; version="1.00"; sha256="1nyf65grcyf74sixixzl12gylk2rzh7n5id4mbhim4lzdm4j272i"; depends=[cluster coda crayon knitr plyr rjags]; }; + BCRA = derive2 { name="BCRA"; version="2.1.2"; sha256="17h0ara1y3fh2xyhjarbw3b549v6kq108bg946ndh7kjykara9dd"; depends=[]; }; BCSub = derive2 { name="BCSub"; version="0.5"; sha256="0c8dlxsx23qfyygmajg2amj78ax01kb3808d9hvy7g3hkgp2i2fp"; depends=[MASS mcclust nFactors Rcpp RcppArmadillo]; }; BCellMA = derive2 { name="BCellMA"; version="0.3.4"; sha256="1njprs7ksv0w18ffs0agz0290aa2akw48225iaa3bjhbl08dpidl"; depends=[ggplot2 reshape2]; }; BCgee = derive2 { name="BCgee"; version="0.1"; sha256="0ad0dj2ymgvkmcmq3jlpmn0pgigdql0xgvcwsbpdydv33a6snr04"; depends=[]; }; - BClustLonG = derive2 { name="BClustLonG"; version="0.1.2"; sha256="0w35pwv3y00pmi4qjnzii3q44k7lk13x0cmh1zq3cl42gpi31p7f"; depends=[lme4 MASS mcclust Rcpp RcppArmadillo]; }; + BClustLonG = derive2 { name="BClustLonG"; version="0.1.3"; sha256="1p6fm60vhs9l3b120h2l7nz4rf4ckhka7124kzwjd7znax2a336g"; depends=[lme4 MASS mcclust Rcpp RcppArmadillo]; }; BDEsize = derive2 { name="BDEsize"; version="1.2"; sha256="1b2lms4nmn6gfjmnjq1vq1g3s1ikv7pl4xpbsxfrph14g6awidax"; depends=[fpow ggplot2 shiny shinyalert]; }; BDP2 = derive2 { name="BDP2"; version="0.1.3"; sha256="14m85sigx6hk0qzhfgih43m2lxp9xczmp9g3z4pping6msbnbdrz"; depends=[rmarkdown shiny shinyBS]; }; BDWreg = derive2 { name="BDWreg"; version="1.2.0"; sha256="07j6dy69q1as1nwgp2790wzpzmjich2256cddhl7n3h2rs1dja74"; depends=[coda doParallel DWreg foreach MASS]; }; @@ -263,19 +267,20 @@ in with self; { BE = derive2 { name="BE"; version="0.1.1"; sha256="1ldzj1fvbgmnp0cn7g348md2xskm2q5b7y6l1sm3pa2am8jc7ixa"; depends=[rtf]; }; BEACH = derive2 { name="BEACH"; version="1.3.1"; sha256="0biq6c74k8vb8ykafzf3blyi08rp65x1vaw3bfpwdc1ihc9wrgjr"; depends=[devtools DT haven plyr rJava rtf sas7bdat shiny WriteXLS xtable]; }; BEDASSLE = derive2 { name="BEDASSLE"; version="1.5"; sha256="1bz3lr0waly9vj9adwhmgs3lq7zjdkcbvm3y9rnn72qlrwmv5fbn"; depends=[emdbook MASS matrixcalc]; }; - BEDMatrix = derive2 { name="BEDMatrix"; version="2.0.2"; sha256="0azhxz2vq77fnw9678s2i04rws6cdw1prkqp9ng3fz8qphrz5q5y"; depends=[crochet]; }; + BEDMatrix = derive2 { name="BEDMatrix"; version="2.0.3"; sha256="1pq333x1shxw3wcqgcb4gqg6rwa0hyc24rib235q4zg10r2gyrbm"; depends=[crochet]; }; BENMMI = derive2 { name="BENMMI"; version="4.3-6"; sha256="07jmf4icij8yb83bf7x0vsaf60gcvdzaijjckv5400xjykpm7scm"; depends=[benthos dplyr ggplot2 jsonlite knitr markdown purrr readr tidyr xtable]; }; - BEST = derive2 { name="BEST"; version="0.5.1"; sha256="0yx3bkaaly0lriyd5xr7aay4c381a5iwanfixz9v37cmvs64rs4s"; depends=[coda HDInterval rjags]; }; + BEST = derive2 { name="BEST"; version="0.5.2"; sha256="0mx5j6hxxvs9mc2ss2wyavdylh857833bsci3yi6lljidv9g28zc"; depends=[coda HDInterval rjags]; }; BESTree = derive2 { name="BESTree"; version="0.5.2"; sha256="0yij6xdlvhbqifckaylgbhszwwp38d9x6vbpr1nl40mwwnv4bswz"; depends=[plyr]; }; BETS = derive2 { name="BETS"; version="0.4.9"; sha256="0daixk7mqmk2jq35i7mjaslz11gxbnnjgwxfvj8x1s88vz9l74sm"; depends=[DBI digest dplyr DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; }; BFS = derive2 { name="BFS"; version="0.2.5"; sha256="0qcqgxzj00n04p20w6hm60lcnccl2mpbxn9mri0x0wdad587jfgi"; depends=[janitor magrittr pins progress purrr pxR rvest tibble xml2]; }; - BFpack = derive2 { name="BFpack"; version="0.1.1"; sha256="0as8mr0g1arqds23k3gx7jcbg7g62yc6fpg45m7f7him4mxxi6k5"; depends=[bain lme4 MASS Matrix mvtnorm pracma]; }; - BGData = derive2 { name="BGData"; version="2.1.0"; sha256="168lvmcfj9ch2dfp8haykgz8cwmrp1yqn01hbyssqfgpc42lrgf3"; depends=[BEDMatrix bigmemory bit crochet ff LinkedMatrix symDMatrix synchronicity]; }; + BFpack = derive2 { name="BFpack"; version="0.2.1"; sha256="1ar1b6sfsd8j7q5pay3a0arlkiff0qvzng7m3ccwhw8i0gffkvs2"; depends=[bain lme4 MASS Matrix mvtnorm pracma]; }; + BGData = derive2 { name="BGData"; version="2.2.0"; sha256="1pn8vwpinn6l6h3lsfpszrp0m2wc3896pi408rjxk8ali0np0182"; depends=[BEDMatrix bigmemory bit crochet ff LinkedMatrix symDMatrix synchronicity]; }; BGGE = derive2 { name="BGGE"; version="0.6.5"; sha256="1h76c40y45xhf2vp9g0q5j9lfwh16q9axbk5c9aqn4md008xr1j2"; depends=[]; }; - BGGM = derive2 { name="BGGM"; version="1.0.0"; sha256="14skhkkf7jzc8b3gx8xjrf4xy42y2hrbcmm24gscz4pkfifyhvc0"; depends=[bayesplot cowplot doParallel foreach GGally ggplot2 ggridges MASS Matrix mvnfast mvtnorm network pracma reshape reshape2 shiny sna stringr]; }; + BGGM = derive2 { name="BGGM"; version="2.0.2"; sha256="0z3vgmc92x3ch8gkddgqc4m7libxi7zddmbx0hhawr7amfhqmfgg"; depends=[BFpack GGally ggplot2 ggridges MASS mvnfast network Rcpp RcppArmadillo RcppDist RcppProgress Rdpack reshape sna]; }; BGLR = derive2 { name="BGLR"; version="1.0.8"; sha256="15cv5k44yj5cws9jjd70hvrkm8gzn5x4hfx408n2fbqbv289b5jy"; depends=[truncnorm]; }; - BGPhazard = derive2 { name="BGPhazard"; version="2.0.0"; sha256="1qh3jylzdf66kx48gq83gc11d2qd27h4l88s965p25lw99lz528b"; depends=[dplyr ggplot2 ggthemes gridExtra magrittr purrr readr rlang survival tibble]; }; + BGPhazard = derive2 { name="BGPhazard"; version="2.0.1"; sha256="1bpj644mcfy1lx9f611zymsc8znr250xwms16rwsbrplifwgpylp"; depends=[dplyr ggplot2 ggthemes gridExtra magrittr purrr readr rlang survival tibble]; }; BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; }; + BGVAR = derive2 { name="BGVAR"; version="2.0.1"; sha256="0rjh5rvkf89q06arggz09ndk7c8ifmdg6an2r2lfy7xg5pmm5f5h"; depends=[abind bayesm coda doParallel foreach GIGrvg knitr MASS Matrix Rcpp RcppArmadillo RcppProgress stochvol xts zoo]; }; BH = derive2 { name="BH"; version="1.72.0-3"; sha256="1ay8vb6i730lipg8b8g3893vqglhw2kqpc29lwdrxdkb66iw33l8"; depends=[]; }; BHAI = derive2 { name="BHAI"; version="0.99.2"; sha256="1hawa55mk590is8ziav7fdszsa3a42bqb0znzqsazz5lkg4daaa7"; depends=[MCMCpack plotrix prevtoinc]; }; BHH2 = derive2 { name="BHH2"; version="2016.05.31"; sha256="1m4fcx979nbm97hi89vbjjix0sx6qhdzs486risck9bi7yzih5k4"; depends=[]; }; @@ -286,17 +291,17 @@ in with self; { BIEN = derive2 { name="BIEN"; version="1.2.4"; sha256="1dagrs54ciagm2mgqrvxl6k2akahr0qk63ifxqnks7iljm0x1gw6"; depends=[ape DBI doParallel fasterize foreach raster rgdal rgeos RPostgreSQL sf sp]; }; BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="3.3-12"; sha256="1kphczvj3rxyjvi93cx2j714scvmmpqv5wrg5pdyy8l891jxsr89"; depends=[miceadds Rcpp RcppArmadillo]; }; BIGDAWG = derive2 { name="BIGDAWG"; version="2.3"; sha256="1lnw31dl161siml6vcp74c30g0rld962ry3am9ljxmd9mw83shnz"; depends=[haplo_stats httr knitr XML]; }; - BIGL = derive2 { name="BIGL"; version="1.4.3"; sha256="1x00n0z9y5qn9nflbrp086a0nzrak8582vhpvbqhj945q7ayvxvy"; depends=[ggplot2 MASS minpack_lm numDeriv progress rgl robustbase scales]; }; + BIGL = derive2 { name="BIGL"; version="1.5.2"; sha256="1n5izivzj01kx94n5p7shd6zlvknqwy6cbdr6xhg32g7p4rvi7s0"; depends=[ggplot2 MASS minpack_lm numDeriv progress rgl robustbase scales]; }; BINCOR = derive2 { name="BINCOR"; version="0.2.0"; sha256="0x2s82jql429shk70bhjdy9kamz8dz5ymsxj6kp8ga1711bpwyq6"; depends=[pracma]; }; BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; }; - BIOMASS = derive2 { name="BIOMASS"; version="2.1.1"; sha256="0i7z0pxxp2b11gnsb51q89zk8wnxz1d86yv08xqf7zivgdf0sgpc"; depends=[data_table jsonlite minpack_lm rappdirs raster sp]; }; + BIOMASS = derive2 { name="BIOMASS"; version="2.1.3"; sha256="185k2j38jvzgan76qwyvnx8safj25w1q0rzh2h8p3lh9rgqzz7dz"; depends=[data_table jsonlite minpack_lm proj4 rappdirs raster sp]; }; BIOdry = derive2 { name="BIOdry"; version="0.8"; sha256="1zga8g50wjnnz2h9b3ak9q67qnl1f14cq6hvdzf9f84pphsnpasa"; depends=[ecodist nlme]; }; BIRDS = derive2 { name="BIRDS"; version="0.1"; sha256="1bfkwyc2hbd23adh11hgzkfr1dpffc3kzshjirizs6nzb7yyq0gz"; depends=[data_table dplyr esquisse geosphere leaflet lubridate magrittr mapedit nnet rgdal rgeos rlang sf shiny shotGroups sp stringr xts]; }; BIS = derive2 { name="BIS"; version="0.2.1"; sha256="0mngmchgc46wc9a7ksyqrvj6k46nm4ih7x69k3xijfia9bgkym0v"; depends=[dplyr readr rvest tidyr xml2]; }; BKPC = derive2 { name="BKPC"; version="1.0.1"; sha256="17gmhf6qq8jn2xzkqvjq60xzy0slz6kgfpd0d6hlpnf30ww7q923"; depends=[kernlab]; }; BLCOP = derive2 { name="BLCOP"; version="0.3.2"; sha256="00x8xk7c8pdwpbmzshjg2ph1yz55vxmliblj1xr7y0gqhcmgyr27"; depends=[fBasics fMultivar fPortfolio MASS quadprog RUnit timeSeries]; }; BLModel = derive2 { name="BLModel"; version="1.0.2"; sha256="0l5f2v5ggadmrci3qhhmxm3j9i6jii0anq5rv5vk50y2qzii2q15"; depends=[]; }; - BLOQ = derive2 { name="BLOQ"; version="0.1-0"; sha256="1ag0dy3cjdxhlspmzfdnpli030g6gwac50n5s30igcyrmw6kl4hf"; depends=[maxLik mvnmle mvtnorm]; }; + BLOQ = derive2 { name="BLOQ"; version="0.1-1"; sha256="0qs4pnzpfwkii6wpd8my34zw9k003b3is0y0aj1lhcm0qnn1p8h4"; depends=[maxLik mvtnorm]; }; BLPestimatoR = derive2 { name="BLPestimatoR"; version="0.3.2"; sha256="0prc2m3hixv8hmnyhr5549406ln509llkhpqra2ifpzif0waw704"; depends=[Formula Matrix mvQuad numDeriv randtoolbox Rcpp RcppArmadillo]; }; BLR = derive2 { name="BLR"; version="1.6"; sha256="1wivqh19kxgr7nwa09s5ay6x1yidjk4hqanv0mzb1nbik98w9024"; depends=[]; }; BLRPM = derive2 { name="BLRPM"; version="1.0"; sha256="15q0jkw4swz35c58nv23k8g1dy1kkbqh5aydjck7pd0fmppqrhpx"; depends=[R6]; }; @@ -305,25 +310,29 @@ in with self; { BMA = derive2 { name="BMA"; version="3.18.12"; sha256="0yfx6m0y8chxlpyngzw27xsgz3g7481ra0xdhsli36mhj9yvgayb"; depends=[inline leaps robustbase rrcov survival]; }; BMAmevt = derive2 { name="BMAmevt"; version="1.0.4"; sha256="10241cibzmgrmxzjw7fpw64qkayc1wig5xilahyc182841k4if6w"; depends=[coda]; }; BMRBr = derive2 { name="BMRBr"; version="0.2.0"; sha256="0v2ysap5jfkq9fc5blqlfhsv2bs8rqybmp5z4q3g6y3y7qzhypjw"; depends=[rvest xml2]; }; - BMRSr = derive2 { name="BMRSr"; version="1.0.0"; sha256="0xdzzwmn2ibzgy68djsf7jxayfwd2yr1qsa0dcg9zl4rhl6b8nrl"; depends=[httr readr stringr tibble xml2]; }; + BMRSr = derive2 { name="BMRSr"; version="1.0.1"; sha256="0falfkw3gx0c1y52lf82lr6z9l6w7lw8bh04vvl2f1cq02c59nvk"; depends=[httr readr stringr tibble xml2]; }; BMRV = derive2 { name="BMRV"; version="1.32"; sha256="1j1cwjk3l7f06nqdwrqdyhzm43bb8hj5wgdd14zc1grxyfc9ya95"; depends=[BH]; }; BMS = derive2 { name="BMS"; version="0.3.4"; sha256="0z3mk1xd1fphf80kdbashkn04jwsr2bghms4d7nav3pw73q41wql"; depends=[]; }; BMT = derive2 { name="BMT"; version="0.1.0.3"; sha256="1vdah5bsn41s2qriq15xi7dw9qzngaacmn5gk6yc7hi89dwyy3yj"; depends=[fitdistrplus partitions]; }; + BMTAR = derive2 { name="BMTAR"; version="0.1.0"; sha256="016pjaddszisj8rgq0k82zss37zkiij5wa9q884w2zxk5c245sy7"; depends=[Brobdingnag doParallel expm ggplot2 ks MASS MCMCpack mvtnorm]; }; + BMTME = derive2 { name="BMTME"; version="1.0.15"; sha256="1vbivzkf6m8808x6mhk6wkpg4i35ik1mzpy69sj0rhi7j4xb3f6c"; depends=[BGLR doSNOW dplyr foreach matrixcalc mvtnorm progress Rcpp RcppArmadillo snow tidyr]; }; BMisc = derive2 { name="BMisc"; version="1.4.1"; sha256="176sqq24xyw9sz1pq721inmqwjxqqzbcp6w65f0m0n4b64yk5gyd"; depends=[]; }; BNDataGenerator = derive2 { name="BNDataGenerator"; version="1.0"; sha256="17zi83jhpn9ygavkpr9haffvd4622sca18jzzxxxmfq0ilrj201g"; depends=[]; }; BNN = derive2 { name="BNN"; version="1.0.2"; sha256="13h9xqfdqnc9d8brx1xlmvb4nrkpwncwjz98y7i3wijih85wkikd"; depends=[mvtnorm]; }; BNPMIXcluster = derive2 { name="BNPMIXcluster"; version="1.2.4"; sha256="06s0cs3anbby93n7pjcin9195agfzfq9im6f9k7ih3cbg8mzfaqy"; depends=[gplots MASS matrixcalc mvtnorm plyr Rcpp RcppArmadillo truncnorm]; }; BNPTSclust = derive2 { name="BNPTSclust"; version="2.0"; sha256="1ymvklv6d9684xzwdkvaxdjd1q20xmsf6kkfibn2wphlaqs2rh2n"; depends=[MASS mvtnorm]; }; BNPdensity = derive2 { name="BNPdensity"; version="2020.3.4"; sha256="0775fcf5y78ibmhl5fljrlvznn1a74s5ihldb6wgixmm4c0xmz3x"; depends=[coda dplyr ggplot2 gridExtra survival tidyr viridis]; }; - BNPmix = derive2 { name="BNPmix"; version="0.2.5"; sha256="16k7161yk1blpqwy9kj8lw565v9zl1298kqmf0agx8wjjjll4jyh"; depends=[coda ggplot2 Rcpp RcppArmadillo]; }; + BNPmix = derive2 { name="BNPmix"; version="0.2.6"; sha256="1r359fxiir0avy5pynszj839hxj17g0ypy8zqfkchmapdzh04zhj"; depends=[coda ggplot2 ggpubr Rcpp RcppArmadillo]; }; BNSL = derive2 { name="BNSL"; version="0.1.4"; sha256="0nrlx55364kgvkdpyaimgjxwnzmmdl1gmvyv3wkm8n2jyki92xxp"; depends=[bnlearn igraph Rcpp]; }; - BNSP = derive2 { name="BNSP"; version="2.1.3"; sha256="1dsic7vmmgklbd7ykkj1484j8gxkra1xjf0bpqc41wwjdc30gfj9"; depends=[coda corrplot cubature Formula ggplot2 gridExtra label_switching mgcv plot3D plyr threejs]; }; + BNSP = derive2 { name="BNSP"; version="2.1.4"; sha256="0685f979zr8mbisbzf27n95064pgr7amk41c024w9gw1p0dj1lai"; depends=[coda corrplot cubature Formula ggplot2 gridExtra label_switching mgcv plot3D plyr threejs]; }; BNrich = derive2 { name="BNrich"; version="0.1.1"; sha256="0m3cz7npc7mwq2vj68hllbd2vf5xqw00jaxv1pm3c28mq7pb459j"; depends=[bnlearn corpcor glmnet graph]; }; BOG = derive2 { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; }; - BOIN = derive2 { name="BOIN"; version="2.6.4"; sha256="0p1205pxa5a9sbw88fm8lbvzgzyq3mf62lsp0l2c0sfsvcfpydkg"; depends=[Iso]; }; + BOIN = derive2 { name="BOIN"; version="2.6.8"; sha256="1p4hj6z6i4xbv9cwdzdalf5ja48jcq3plg59xzqfkgslwwn96gpx"; depends=[Iso]; }; + BOJ = derive2 { name="BOJ"; version="0.2.2"; sha256="0xr55jif6al9qyz25k7ab0k938z93j0gzwf6njwv0xnp92j3a30i"; depends=[dplyr readr rvest tidyr tidyselect xml2]; }; BOSSreg = derive2 { name="BOSSreg"; version="0.1.0"; sha256="1nngs9j1hbb9ws423dxccjxwpkc5zl6l0zv46gb0v6m8y11d077b"; depends=[Matrix Rcpp RcppArmadillo]; }; BPEC = derive2 { name="BPEC"; version="1.3.1"; sha256="0jvq56cq1wnhwd6wvg02hbx4b5vc2hz1lyxi63pl41rk0xva615a"; depends=[ape coda fields ggmap ggplot2 igraph maptools mvtnorm OpenStreetMap phytools sp]; }; BPM = derive2 { name="BPM"; version="1.0.0"; sha256="17k2d1xjfz85ygx0xnh6yqca9nyypd32d7sbna3k33ynsjqay3x8"; depends=[limma]; }; + BRDT = derive2 { name="BRDT"; version="0.1.0"; sha256="1yv2fh4cc9h35l8cngpxnqa83a7bx79pr7c1gp9h84p1pigg8282"; depends=[]; }; BRETIGEA = derive2 { name="BRETIGEA"; version="1.0.0"; sha256="176z7ajyfcfljv36d2sa15cvw047rsir3gn0l4lxmcyliw93r4lv"; depends=[]; }; BRISC = derive2 { name="BRISC"; version="0.2.0"; sha256="0dnkf4ld1blbadmxvgd0k021ihszrf2x19qypvv8jvgfrgcr8ax7"; depends=[matrixStats pbapply RANN rdist]; }; BRL = derive2 { name="BRL"; version="0.1.0"; sha256="13qi78v3057qn4hfby14sp26hy3ibl50f06x8gpak6gi76g8bhwi"; depends=[]; }; @@ -333,19 +342,21 @@ in with self; { BSGW = derive2 { name="BSGW"; version="0.9.2"; sha256="1q6qvm9yxh35wywrzs3kr31jsa0bmbwrqh0r3qjc0dzi6q8n6pjy"; depends=[doParallel foreach MfUSampler survival]; }; BSL = derive2 { name="BSL"; version="3.0.0"; sha256="1cmydj59slj88awc2i7jg84hfaa9j3qp4d1042dgamc7xqvfh397"; depends=[coda copula foreach ggplot2 glasso gridExtra MASS mvtnorm Rcpp RcppArmadillo]; }; BSPADATA = derive2 { name="BSPADATA"; version="1.0"; sha256="1g709i0icxlxq2ljb2sm5iyc8ljqxadi62xc4mg702fsgl0x5ny9"; depends=[mvtnorm pscl spdep]; }; + BSS = derive2 { name="BSS"; version="0.1.0"; sha256="1lxmrdmr6c0niqz61kc9ybzszprn66jyinfy4dr9r6i161gvs4qg"; depends=[hypergeo MASS phangorn]; }; BSSasymp = derive2 { name="BSSasymp"; version="1.2-1"; sha256="0w141yxqpck59n85rjc6d3qy6bwhk1z80zsm21hda0bgfwy9v6wy"; depends=[fICA JADE]; }; BSW = derive2 { name="BSW"; version="0.1.0"; sha256="0wh8m09nqzvsij8q8mdyr5yafdq7h568s28vih2wpplp0sv01945"; depends=[Matrix matrixStats quadprog]; }; BSagri = derive2 { name="BSagri"; version="0.1-10"; sha256="096l2ilr4x2fbjxchkksxkbiyaf7wwdmzn4xyjx001w873x9dgf6"; depends=[boot gamlss MCPAN mratios multcomp mvtnorm]; }; BTLLasso = derive2 { name="BTLLasso"; version="0.1-10"; sha256="0ab19dcn55nzkl3q865affiqjkd4j9yiil0a7kxcpbm0rva9x6zj"; depends=[Matrix psychotools Rcpp RcppArmadillo stringr TeachingDemos]; }; - BTM = derive2 { name="BTM"; version="0.3"; sha256="1vb3happ2fw3h7yilm87qxsrmncjnpaapiwqr7ai2p54vk7pax9m"; depends=[Rcpp]; }; + BTM = derive2 { name="BTM"; version="0.3.1"; sha256="0dl8gnq31xm5dfxdn9s47p31j3dhqpq5gfhq1q8wjm9gdiybg4ad"; depends=[Rcpp]; }; BTSPAS = derive2 { name="BTSPAS"; version="2020.1.1"; sha256="004klyyg9gqalwx2i5lx57p1qxrm50nszzg839kv3v421b14qg80"; depends=[actuar coda data_table ggforce ggplot2 gridExtra plyr R2jags reshape2]; }; BTYD = derive2 { name="BTYD"; version="2.4"; sha256="13szcsgsrd7mwc4f47xrfrmsm2sg5sf7pfm21ly4cbvqcz8m0147"; depends=[hypergeo Matrix]; }; BTYDplus = derive2 { name="BTYDplus"; version="1.0.1"; sha256="0x8as4zskpbsvhh8gnvzgp833dkv01cs5fqfva9qri296343kppv"; depends=[bayesm BTYD coda data_table mvtnorm Rcpp]; }; BTdecayLasso = derive2 { name="BTdecayLasso"; version="0.1.0"; sha256="0x1s2zvv3vnapk5wp8582zwflsqvgc8khkvl5ch9i70v739jxp15"; depends=[ggplot2 optimr]; }; - BUCSS = derive2 { name="BUCSS"; version="1.1.0"; sha256="1agx6yd29zq6gvwgnd0qahjnk5z7gdbijbg7rk85d5x6pihwmh9q"; depends=[]; }; - BVAR = derive2 { name="BVAR"; version="0.2.2"; sha256="0gvzwxnscfny0xfr093bmbhyw82g93zabfd2y20b74l53f0asz9l"; depends=[mvtnorm]; }; + BUCSS = derive2 { name="BUCSS"; version="1.2.0"; sha256="0shz72l69iz0d1ncdwzklhabmvhp983vr2yqhmdhpzcmz3fkp1wp"; depends=[]; }; + BVAR = derive2 { name="BVAR"; version="1.0.0"; sha256="1fkf8yl9f8c70p8hmz8xx3phdqhyh4s9kbrxjmp75yq1piwqrpsx"; depends=[mvtnorm]; }; BVS = derive2 { name="BVS"; version="4.12.1"; sha256="111g61bpwh80v6gy44q087swcrnnnzdcibm22pzzi9jsfphy6l0c"; depends=[haplo_stats MASS msm]; }; BVSNLP = derive2 { name="BVSNLP"; version="1.1.8"; sha256="0qlmvi189ky6h0a3jyvyil488asx3v6x52mvca7s93dvarxr6rw1"; depends=[doParallel foreach Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; + BWGS = derive2 { name="BWGS"; version="0.1.0"; sha256="10cqwc9lx5m2s3qay1223whah3jj9fcmyqsw3x8schi9wvrfx8v8"; depends=[BGLR brnn e1071 glmnet randomForest rrBLUP]; }; BWStest = derive2 { name="BWStest"; version="0.2.2"; sha256="02amzlfprmw5pyis0dg0kg0x8xqh50a4vfdcxxmklrzik3b1vzzs"; depends=[memoise Rcpp]; }; BaBooN = derive2 { name="BaBooN"; version="0.2-0"; sha256="145q2kabjks2ql3m48sfjis5y35l8rcqnr5s176viv9yhfafn351"; depends=[coda Hmisc MASS nnet Rcpp RcppArmadillo]; }; BaM = derive2 { name="BaM"; version="1.0.1"; sha256="0y8m6mhghlrp379swj9cfrzqcdr3a7y29mx4d6zld4is00wdw16b"; depends=[coda dlm MASS mice nnet]; }; @@ -353,6 +364,7 @@ in with self; { BaPreStoPro = derive2 { name="BaPreStoPro"; version="0.1"; sha256="0zyyyrr5h8dhjsmgaii8jmb8ignvixpc9nzbfishw9yymjswvm57"; depends=[]; }; BaSTA = derive2 { name="BaSTA"; version="1.9.4"; sha256="1j092gsdip7rpw0g74ha0kjsrqpp5swi7wd4sxlmx6zarcqnxlal"; depends=[snowfall]; }; BaTFLED3D = derive2 { name="BaTFLED3D"; version="0.2.11"; sha256="0gab9iz1ra72hw8j31n97ysyr3cclhgvdxriyjk8wwv2nrmbw12h"; depends=[foreach iterators R6 RColorBrewer rTensor]; }; + BacArena = derive2 { name="BacArena"; version="1.8.2"; sha256="1fv3hmr8frqgdl22cvp5w5089ppmqzw42llw2ls054dvsdadlqm9"; depends=[deSolve ggplot2 glpkAPI igraph Matrix plyr R_matlab Rcpp RcppArmadillo RcppEigen ReacTran reshape2 stringr sybil]; }; BalanceCheck = derive2 { name="BalanceCheck"; version="0.2"; sha256="0aal641vfbjk3w6ipwbqqmm9nnxs962hjmpph9wnqaqk5r6s7brs"; depends=[ade4 mvtnorm]; }; BalancedSampling = derive2 { name="BalancedSampling"; version="1.5.5"; sha256="01ayvjfs83dbnk0m9xb7y9rnxxpfpb6w4qjdffd6hdhcn2s5f73d"; depends=[Rcpp SamplingBigData]; }; Ball = derive2 { name="Ball"; version="1.3.9"; sha256="1cznrlgj75xwgpqqsnl0vnjd7pwvkna0cakdz4bcya4hn74dx27y"; depends=[gam mvtnorm survival]; }; @@ -361,14 +373,14 @@ in with self; { BarcodingR = derive2 { name="BarcodingR"; version="1.0-3"; sha256="03x26mrlvg00rnfh74wacpgbdk7xr2lq4yd0bx4q2442nli54rdv"; depends=[ape class nnet sp]; }; Barnard = derive2 { name="Barnard"; version="1.8"; sha256="1ki58hjs5kpmp76kwj1qi6hwmdvjphqb1lvrlhnmkgqxg4hw4vqg"; depends=[]; }; Barycenter = derive2 { name="Barycenter"; version="1.3.1"; sha256="0yhc0wwjqms569gnm8z2l9hgcbw8lyy437ynkij47pa4c1a1qvjy"; depends=[Rcpp RcppArmadillo]; }; + BasketballAnalyzeR = derive2 { name="BasketballAnalyzeR"; version="0.5.0"; sha256="1bad287llg89smqg43lgz2hdkjg3l39mh4k82avgb52xwqp5gjxc"; depends=[circlize corrplot dendextend directlabels dplyr GGally ggnetwork ggplot2 ggplotify ggrepel gridExtra hexbin magrittr MASS network operators PBSmapping plyr readr rlang scales sna sp statnet_common stringr tidyr]; }; BatchExperiments = derive2 { name="BatchExperiments"; version="1.4.2"; sha256="0zvcpgzhbna6p37jlf57j7mzrvh5xs5w17janmv9v4210cpbzi1q"; depends=[backports BatchJobs BBmisc checkmate data_table DBI RSQLite]; }; BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="2.5.7"; sha256="155wwskqagz3qcng71nn0v52mvassdinhmvaf1hv74dakvvfjrj2"; depends=[crayon curl dplyr furrr future lubridate purrr quantmod rvest scales stringr tibble tidyr XML zoo]; }; BatchJobs = derive2 { name="BatchJobs"; version="1.8"; sha256="1zz4sspj596pijxlz321g0jy2rg9ki83j6fihbwisjwr66p2vk1m"; depends=[backports BBmisc brew checkmate data_table DBI digest RSQLite sendmailR stringi]; }; BayHaz = derive2 { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdgqycqcillqmx73knzzdlg2kzc77dvg6"; depends=[]; }; BayLum = derive2 { name="BayLum"; version="0.1.3"; sha256="0hina84s8ax01zpnji4jqqkdap0phvxr78s4rnab0407xrydbf0w"; depends=[ArchaeoPhases coda hexbin KernSmooth Luminescence rjags]; }; BaySIC = derive2 { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[fields poibin rjags]; }; - BayesARIMAX = derive2 { name="BayesARIMAX"; version="0.1.0"; sha256="1kz0x5l97l7zqpi3813ibqk6gsv3wsxnvgcw6lplg7gfxjavcz7w"; depends=[coda forecast TSA]; }; - BayesBD = derive2 { name="BayesBD"; version="1.2"; sha256="10ik2lndqgmy6pvdm6cx4fsxgjb2fgi6hlz5ic35ab7fkpi90ka5"; depends=[jpeg mritc png Rcpp RcppArmadillo shiny]; }; + BayesARIMAX = derive2 { name="BayesARIMAX"; version="0.1.1"; sha256="1rcfq0r8sqiqs65mbpcr8i4667cdb50k6bx6wdh9spr0djh8gfv0"; depends=[coda forecast]; }; BayesBEKK = derive2 { name="BayesBEKK"; version="0.1.0"; sha256="0fykcmf54820krwy7q573gmlcrx96i94knx7rgzc83i287lnpnfg"; depends=[coda MTS mvtnorm]; }; BayesBP = derive2 { name="BayesBP"; version="1.0"; sha256="1gmjljkp4pvm87qf6rq2kixqdx64sfg34b1xxdl242a3cckmjc5y"; depends=[iterators openxlsx]; }; BayesBinMix = derive2 { name="BayesBinMix"; version="1.4.1"; sha256="1b18qg0mjbmrilwqffrq33gw04fzask2xgj1bp4cli51cjf2slf7"; depends=[coda doParallel foreach label_switching]; }; @@ -383,26 +395,31 @@ in with self; { BayesGESM = derive2 { name="BayesGESM"; version="1.4"; sha256="0qw2byb48f67461m1k8a1rqh6a0c3zq1rc4ni9xzxv8dih4wkq0f"; depends=[Formula GIGrvg normalp]; }; BayesGOF = derive2 { name="BayesGOF"; version="5.2"; sha256="17wm0228xq3db431abyi9jr0q1q86nnajsn7hmy4dwzgvrlz5s0i"; depends=[Bolstad2 nleqslv orthopolynom VGAM]; }; BayesGPfit = derive2 { name="BayesGPfit"; version="0.1.0"; sha256="1sz0bb102h5fj1yz0k89cvcy0pvsh6rfm06i6lfz3pdhdjszsx00"; depends=[lattice]; }; - BayesLCA = derive2 { name="BayesLCA"; version="1.8"; sha256="1r62h8g2bjr68682pffjclcrxvpbz24gm28s03dnzjh4aha7f9y7"; depends=[coda e1071 fields MCMCpack nlme]; }; + BayesGWQS = derive2 { name="BayesGWQS"; version="0.0.2"; sha256="0xy71d121hl8mg71cfyqw3j0sjx46qj5bifdk55h7jyfynr80pax"; depends=[coda rjags]; }; + BayesLCA = derive2 { name="BayesLCA"; version="1.9"; sha256="11ji5s1njip57zkr4bxwp3agx1ddv7yagm5prn9ckcbasan4rbx1"; depends=[coda e1071 fields MCMCpack nlme]; }; BayesLN = derive2 { name="BayesLN"; version="0.1.2"; sha256="16nw6nxqqcqlcqjbz1nyk2laz5naqfj9hg1a616x1ms88bhxmcsx"; depends=[coda data_table fAsianOptions ghyp lme4 MASS optimx Rcpp RcppArmadillo]; }; BayesLogit = derive2 { name="BayesLogit"; version="2.1"; sha256="0w3bzk39sxdskwikcz5i0xwfsll4sqgkpr8vw8jvzlcy6dl3yhis"; depends=[]; }; BayesMAMS = derive2 { name="BayesMAMS"; version="0.1"; sha256="1qq3j9nm0k58gpyfavz77v1dwghy8pmpk0v52cj7l8sb3a3aiinm"; depends=[mvtnorm]; }; BayesMFSurv = derive2 { name="BayesMFSurv"; version="0.1.0"; sha256="1yxxzwjh1fgfh7qkzf9dfm3x0vbgb0v4p6bf6b5w14kvm06rzhkg"; depends=[coda FastGP MCMCpack mvtnorm Rcpp RcppArmadillo]; }; - BayesMallows = derive2 { name="BayesMallows"; version="0.4.2"; sha256="0fxv2llly4ada34mvvbgmsjq0kypd5ln208c38wqp87im2lvalc6"; depends=[cowplot dplyr ggplot2 HDInterval igraph PerMallows purrr Rcpp RcppArmadillo Rdpack relations rlang sets tidyr]; }; + BayesMRA = derive2 { name="BayesMRA"; version="1.0.0"; sha256="005pygpa8bmr153naxnag7kn876lqwq34d8pzbj954nivlxl4zaw"; depends=[fields igraph Matrix mvnfast Rcpp RcppArmadillo spam]; }; + BayesMallows = derive2 { name="BayesMallows"; version="0.4.4"; sha256="1zgvmdhygfvbql6fhb81h6734kqs1h7v0qqicq8s9z5d6zgy247g"; depends=[cowplot dplyr ggplot2 HDInterval igraph PerMallows purrr Rcpp RcppArmadillo Rdpack relations rlang sets tidyr]; }; + BayesMassBal = derive2 { name="BayesMassBal"; version="0.2.0"; sha256="1ac1kirnic8c5mzja1m2mnv3wd89z0r0l3nqjx7a0h36cddykl6s"; depends=[HDInterval LaplacesDemon MASS Matrix pracma Rdpack tmvtnorm]; }; BayesMixSurv = derive2 { name="BayesMixSurv"; version="0.9.1"; sha256="19kf39881q00pap9afwvvggk4s4w3qpz17b7065nig1mvk8dnp8r"; depends=[survival]; }; BayesNI = derive2 { name="BayesNI"; version="0.1"; sha256="0zvr6rkb5zxgl53xby69d0j3yrfnlcmac6kwkxz77q5616w9dwq0"; depends=[]; }; BayesNSGP = derive2 { name="BayesNSGP"; version="0.1.1"; sha256="11c83iafhl8yasyy8xwk9wladbj986xpmgc8d3yd9dxkic71flw8"; depends=[FNN Matrix nimble StatMatch]; }; - BayesNetBP = derive2 { name="BayesNetBP"; version="1.5.2"; sha256="0i5pr9q8fzfxwxp9cb85xs9gaywfbv6h37bg3xz01d292ir56pl9"; depends=[bnlearn doBy fields graph igraph qtl qtlnet RColorBrewer]; }; + BayesNetBP = derive2 { name="BayesNetBP"; version="1.5.5"; sha256="0vs8m62arvsc1rp7znr8j1wvljm2r4wcgzk6ry6iy6x6xmwa0z84"; depends=[bnlearn doBy fields graph igraph qtl qtlnet RColorBrewer]; }; BayesPieceHazSelect = derive2 { name="BayesPieceHazSelect"; version="1.1.0"; sha256="0znbmv7crqycdx75jh02h6z8d6cifjszbrldv2yva4mkjxsydag5"; depends=[mvtnorm]; }; BayesPiecewiseICAR = derive2 { name="BayesPiecewiseICAR"; version="0.2.1"; sha256="1qrmw7zmygdzz84p76hyh2d8dx88b8xhbbd7radqm39g35zq5wz6"; depends=[mvtnorm]; }; + BayesPostEst = derive2 { name="BayesPostEst"; version="0.2.1"; sha256="0n2blfdzga93zmf0v94wlcmcyqlvbga50chqyv5pkx2z6l5xhdnc"; depends=[carData caTools coda dplyr ggmcmc ggplot2 ggridges HDInterval R2jags reshape2 rlang ROCR runjags texreg tidyr]; }; BayesRS = derive2 { name="BayesRS"; version="0.1.3"; sha256="0fhvnckabp0z1cdsbjgv3ijnzaxwhrk83fwcflgqbhvm3a9lzr77"; depends=[coda ggplot2 metRology reshape rjags]; }; BayesReversePLLH = derive2 { name="BayesReversePLLH"; version="1.3"; sha256="07ijys5qd29qpa1hh6kbbp6fx97nmxydiijd0k0dh262vqfhh5ll"; depends=[Rcpp RcppArmadillo]; }; BayesS5 = derive2 { name="BayesS5"; version="1.41"; sha256="0vs6s50h4gpxda9lbxfgn76k9kp81l62a6bv22r7ixsjlnd4baql"; depends=[abind Matrix snowfall splines2]; }; BayesSAE = derive2 { name="BayesSAE"; version="1.0-2"; sha256="1xbx9hr254agpcqs1fl7qi7h19fd2bbmjszn44l566n2svgvxwf5"; depends=[coda Formula lattice]; }; - BayesSUR = derive2 { name="BayesSUR"; version="1.1-1"; sha256="0j5cmw85msqpb4zl4fdg1988d8z316zhbgm6yblfk4fgnszdnfh4"; depends=[igraph Matrix Rcpp RcppArmadillo tikzDevice xml2]; }; + BayesSUR = derive2 { name="BayesSUR"; version="1.2-1"; sha256="08319q3xcid9vmh78x5l18xc53ca43xm9ij5bya3nznf2safbwls"; depends=[igraph Matrix Rcpp RcppArmadillo tikzDevice xml2]; }; BayesSampling = derive2 { name="BayesSampling"; version="1.0.0"; sha256="06gy902ksa753hn5p4zmsxaw6qg4qx4prd8n5m2w1300561cfbkl"; depends=[MASS Matrix]; }; + BayesSenMC = derive2 { name="BayesSenMC"; version="0.1.2"; sha256="0vzvc7xmr39mlhqx0cmqrw2bszmxfbzbyy2l3ssbw2cz0c4xarkj"; depends=[dplyr ggplot2 lme4 Rcpp rstan]; }; BayesSpec = derive2 { name="BayesSpec"; version="0.5.3"; sha256="17gchdijcjhbr2y4glbq9szjh4qmgivzh6p4fllh589da18nzjcr"; depends=[mvtnorm pscl trust]; }; - BayesSummaryStatLM = derive2 { name="BayesSummaryStatLM"; version="1.0-1"; sha256="05mlgyi4fglvjkpqyw3vcjpipqllx37svcb20c1mrsa46m6fm4s7"; depends=[ff mvnfast]; }; + BayesSurvival = derive2 { name="BayesSurvival"; version="0.1.0"; sha256="1bkadvlz8rb77ivms52s4ic853y6fll4fkaamgyskmacx69897vi"; depends=[ggplot2 survival]; }; BayesTree = derive2 { name="BayesTree"; version="0.3-1.4"; sha256="0saca1ln582szqzc2c78z24b1lszzhc9hvsin73kb7r2dlg5ciii"; depends=[nnet]; }; BayesTreePrior = derive2 { name="BayesTreePrior"; version="1.0.1"; sha256="13igmvw1wj8kzfijzsrhdqr52kv4vqrm91i71ay6f7jnkry3spaw"; depends=[]; }; BayesTwin = derive2 { name="BayesTwin"; version="1.0"; sha256="026blnhihbx9bpd63mxhbp0kpvj0lwbj7mg72alyfr2jnrh1n3lp"; depends=[coda foreign matrixStats rjags]; }; @@ -411,18 +428,19 @@ in with self; { BayesX = derive2 { name="BayesX"; version="0.3-1"; sha256="0g4cdkvicqzg75qgr62j89dc9mni38ai7705j6jbfx59vn6dbrr5"; depends=[coda colorspace maptools shapefiles sp]; }; BayesXsrc = derive2 { name="BayesXsrc"; version="3.0-1"; sha256="0l8c6xsyqj09m722hdanr1d9n6a1ps77ybm1jaqmp86bqmq1br03"; depends=[]; }; BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; }; + BayesianFROC = derive2 { name="BayesianFROC"; version="0.3.0"; sha256="0h5qnkvm2grhl4wvyyfy2n86d4llpqw3bijgzkdw7871j5h7yflg"; depends=[bridgesampling car crayon DiagrammeR ggplot2 knitr pracma Rcpp readxl rhandsontable rstan shiny shinydashboard shinythemes xlsx]; }; BayesianGLasso = derive2 { name="BayesianGLasso"; version="0.2.0"; sha256="09yb1qqx6qlsspk3ndrcqxy0956iqznw0rmyvqxgxxp3zd3y21xp"; depends=[MASS statmod]; }; BayesianNetwork = derive2 { name="BayesianNetwork"; version="0.1.5"; sha256="0vnnxzxz68dkfwr9wif8lam3a4khgbslbf49xkygqm8n1swysx2x"; depends=[bnlearn heatmaply lattice networkD3 plotly rintrojs shiny shinyAce shinydashboard shinytest shinyWidgets testthat]; }; - BayesianPower = derive2 { name="BayesianPower"; version="0.1.6"; sha256="1n41blyqmjq2zdhbz8srsx32piyg26fwgzfphhka12ybk93b2d2h"; depends=[]; }; + BayesianPower = derive2 { name="BayesianPower"; version="0.2.3"; sha256="00rn3wmqrhk2pssbq5j2prl8m6cgfarr49672pnksp2dcbi47p20"; depends=[]; }; + BayesianReasoning = derive2 { name="BayesianReasoning"; version="0.3.2"; sha256="1d9s47bkx5m6dsdq4hbflm7x1lax4n9gk3wbvilpybp6gn3bhlm9"; depends=[dplyr ggforce ggplot2 magrittr reshape2 tibble tidyr]; }; BayesianTools = derive2 { name="BayesianTools"; version="0.1.7"; sha256="0330bbnny35h4gsmwg31p3n3i511wrckzmp174ydm55pvsdkhjdg"; depends=[bridgesampling coda DHARMa ellipse emulator gap IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp tmvtnorm]; }; Bayesiangammareg = derive2 { name="Bayesiangammareg"; version="0.1.0"; sha256="0b0fqmig7vgmlrq2884q0apfd89nn5k4dj8rqjizkkbw4qpzmylb"; depends=[mvtnorm]; }; Bayesrel = derive2 { name="Bayesrel"; version="0.6.1"; sha256="1mdc53g17c4r078mw74iiir03ks8kv60qh16l8fqy00vzwvbgpi9"; depends=[coda ggplot2 ggridges LaplacesDemon lavaan MASS plotrix Rcsdp Rdpack]; }; - BaylorEdPsych = derive2 { name="BaylorEdPsych"; version="0.5"; sha256="1kq6nvzdqwawygp7k62lw5hyccsj81jg82hq60yidgxnmmnnf7y2"; depends=[]; }; BcDiag = derive2 { name="BcDiag"; version="1.0.10"; sha256="1gyinmx5wn2kk70hiy28ghilkhfirfjbfqdrqq5h3wfb4khnq6pz"; depends=[fabia]; }; Bchron = derive2 { name="Bchron"; version="4.7.1"; sha256="1s6rvbxmsj5ksykxlvfzprxapn83wd8wcrq0yxpfd647jq4y7c20"; depends=[coda dplyr ggforce ggplot2 ggridges magrittr MASS mclust purrr scales stringr]; }; Bclim = derive2 { name="Bclim"; version="3.1.2"; sha256="0dd4fx3rlljj3zb1m8q1bam1bswg497l3y8k0h0mkvjn94b4jbag"; depends=[ggplot2 MASS mclust statmod]; }; - BeSS = derive2 { name="BeSS"; version="1.0.8"; sha256="1yxinr3bfnk2ryal41l0j7i345aynrr62dd1rarrbyspxfrhimiq"; depends=[glmnet Matrix Rcpp RcppEigen survival]; }; - Benchmarking = derive2 { name="Benchmarking"; version="0.28"; sha256="1f13m6fz9wd6zzknglcl0za16dbjsxn9f2714rpg8hcsr3hrlhdl"; depends=[lpSolveAPI ucminf]; }; + BeSS = derive2 { name="BeSS"; version="1.0.9"; sha256="1fslwh0fyhgaqrlhn6gsiq8rs3xcylwva98dqvch0hjg6sckccww"; depends=[glmnet Matrix Rcpp RcppEigen survival]; }; + Benchmarking = derive2 { name="Benchmarking"; version="0.29"; sha256="06zphnpnxvp6frl2gkmrsfils8xi64b4m8gvs483k8l0z4bjrfbk"; depends=[lpSolveAPI quadprog Rcpp ucminf]; }; BenfordTests = derive2 { name="BenfordTests"; version="1.2.0"; sha256="1nnj0w0zwcmg7maqmmpixx7alvsyxva370ssc26ahg6kxy5a621w"; depends=[]; }; Bergm = derive2 { name="Bergm"; version="5.0.1"; sha256="1zy2ar43v7pf1ibbhf7visy1ia24lfpa2kb921vxd7hiilky1h8v"; depends=[coda ergm Matrix matrixcalc MCMCpack mvtnorm network]; }; Bessel = derive2 { name="Bessel"; version="0.6-0"; sha256="0iwm08nhlivi4zwcqdi296a1l4n4lfanfxhaysh9vcsyk1kpiacf"; depends=[Rmpfr]; }; @@ -430,19 +448,17 @@ in with self; { BetaBit = derive2 { name="BetaBit"; version="1.3"; sha256="1x9mfnijgi8726p82d52g2zgmliwsc97v2g96mz9ccz2vqqnwq4w"; depends=[digest]; }; BetaPASS = derive2 { name="BetaPASS"; version="1.1-1"; sha256="17q1bfmijv38zyaj5fxlylf5zmkqry4ca9wm5km6zpksgsg2kjjq"; depends=[betareg ggplot2 pbapply]; }; BeviMed = derive2 { name="BeviMed"; version="5.7"; sha256="1fjxin14x9i44wq6ad2i70k6sdfzy7zxyq1pibnmsyk4a0k2cfv1"; depends=[Rcpp]; }; - BeyondBenford = derive2 { name="BeyondBenford"; version="1.3"; sha256="08cfm4knssr5zhcc2xl7xgzxx39wv09hil305hi1s219ba7hzx3q"; depends=[ggplot2]; }; + BeyondBenford = derive2 { name="BeyondBenford"; version="1.4"; sha256="04jdx35955g44v2is6zxfw1gip7zh3li8divc7iy5hl0jrshfhv3"; depends=[ggplot2]; }; Bhat = derive2 { name="Bhat"; version="0.9-10"; sha256="1vg4pzrk3y0dk1kbf80mxsbz9ammkysh6bn26maiplmjagbj954v"; depends=[]; }; BiBitR = derive2 { name="BiBitR"; version="0.3.1"; sha256="0wfwph6nw12hb43j14i9ycj8m2zn0m5ynp7afq9cray8rbgvxfv6"; depends=[biclust cluster dendextend foreign lattice randomcoloR viridis]; }; - BiDAG = derive2 { name="BiDAG"; version="1.3.4"; sha256="16s7925lz59sscj6zpbm9g1irpg21rqr9kn55175wll2gwgmhy4m"; depends=[graph pcalg Rcpp]; }; + BiDAG = derive2 { name="BiDAG"; version="1.4.1"; sha256="079syby4adn2ka7p5dcbxay1sh6fb5879g969jrfqwzxn4napjm4"; depends=[graph pcalg Rcpp Rgraphviz]; }; BiDimRegression = derive2 { name="BiDimRegression"; version="2.0.0"; sha256="0k0708z6xn04zjkc4sk15649wji6hl5q4rvd28sz5kbq7z54j1j5"; depends=[Formula]; }; BiProbitPartial = derive2 { name="BiProbitPartial"; version="1.0.3"; sha256="0y19b8bkwr7rpygmj03013slmfbyd7aj6714hm14w5rdbnckymw3"; depends=[coda Formula mvtnorm numDeriv optimr pbivnorm Rcpp RcppArmadillo RcppTN]; }; BiSEp = derive2 { name="BiSEp"; version="2.2"; sha256="1ha7rc1q54dr2xl4bpkiwl703igmmi9qphsgv2h0flq7iz0gr351"; depends=[AnnotationDbi GOSemSim mclust]; }; BiTrinA = derive2 { name="BiTrinA"; version="1.3"; sha256="0sjq5a21vpsjs0ad0v8gsqlbk3n8virg1hzj0nvgm3h3xqhymh1d"; depends=[diptest]; }; BiasedUrn = derive2 { name="BiasedUrn"; version="1.07"; sha256="13i2lgfnjhlbbm2yxfc2l5hswqw6x03pwba5csjmirv8kpjw4xr3"; depends=[]; }; BibPlots = derive2 { name="BibPlots"; version="0.0.6"; sha256="0gbywbxhqw226mzhxlkl98yky206f9m81wcrp6r4wj8wqhzc2fay"; depends=[]; }; - BifactorIndicesCalculator = derive2 { name="BifactorIndicesCalculator"; version="0.2.0"; sha256="117l4j9h64rh65zs5j0xzdx1mn172lkak6pvkhlbc9c8g5rkfcv2"; depends=[lavaan mirt MplusAutomation tidyr]; }; - BigQuic = derive2 { name="BigQuic"; version="1.1-8"; sha256="1kg48jqm62qmz5x0h6fgvd5fs5dvg51x4spsn1q503ag4dqqdjc0"; depends=[Matrix Rcpp scalreg]; }; - BigSEM = derive2 { name="BigSEM"; version="0.2"; sha256="091fdibcxd8a8kf9k4pvc1sah830wh179f28gag9g816h4qclnx9"; depends=[MASS parcor]; }; + BigQuic = derive2 { name="BigQuic"; version="1.1-9"; sha256="09fpqs5b733gq2kb7yj8a8snhr6zqg0mqa04p7fm6z2vas9cl3ri"; depends=[Matrix Rcpp scalreg]; }; BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; }; BigVAR = derive2 { name="BigVAR"; version="1.0.6"; sha256="03d5a61clkngq67mkf2pyjj3k633kxp7g37myfplbxi55bdfmdlz"; depends=[lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; BimodalIndex = derive2 { name="BimodalIndex"; version="1.1.9"; sha256="1m1dcj0ryjicaqjlkch7aymsklmvjvn2dvnbssi1cpi54bzn8l7g"; depends=[mclust oompaBase]; }; @@ -460,6 +476,7 @@ in with self; { BinarybalancedCut = derive2 { name="BinarybalancedCut"; version="0.2"; sha256="1rs7x7ggqzaz9r2912g0fi9x7przd8gjy6pianx457w5f39fqx4v"; depends=[ggplot2 reshape2]; }; BioCircos = derive2 { name="BioCircos"; version="0.3.4"; sha256="1gl57r47p5z1wzs94xzc26j2r8z5hpqr4163b01x6jwzvbrlfwhz"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; }; BioFTF = derive2 { name="BioFTF"; version="1.2-0"; sha256="03r6fhpc4dqrcnbl73j9kav1l7rblgfldpbkl2p367vv20xggqih"; depends=[]; }; + BioInsight = derive2 { name="BioInsight"; version="0.1.0"; sha256="0wm39l9q3dafhkwwcrv5qjlr193gnmzcg4z9fnr6dvmy6gl6xc70"; depends=[edgeR knitr limma RColorBrewer wordcloud]; }; BioInstaller = derive2 { name="BioInstaller"; version="0.3.7"; sha256="0xbxv2ln39z70javxbx5rf77yf9zyjif3ppnr3id7cmy24hhqcab"; depends=[configr devtools futile_logger git2r jsonlite liteq R_utils RCurl rvest shiny stringi stringr]; }; BioMark = derive2 { name="BioMark"; version="0.4.5"; sha256="1ifc72bayy3azbilajqqzl0is6z7l1zaadchcg3n8lhmjrv5sk3m"; depends=[glmnet MASS pls st]; }; BioMedR = derive2 { name="BioMedR"; version="1.2.1"; sha256="0l3nmnqv0gzkbby4fhajbba910zpnbyckvxwds353pn54g9pcry7"; depends=[Biostrings ChemmineR fmcsR GOSemSim MASS org_Hs_eg_db pls randomForest rcdk RCurl rjson]; }; @@ -470,13 +487,14 @@ in with self; { BiocManager = derive2 { name="BiocManager"; version="1.30.10"; sha256="03n9s2vf7vgpgb5alpxwamf9xfkn32cbzngwyn6spq1bnh9a9dzk"; depends=[]; }; Biocomb = derive2 { name="Biocomb"; version="0.4"; sha256="0jqfac81r5731m0i9jq7v5ns9263p8r7i03jyz10y915kfr6ikh6"; depends=[arules class e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; }; Biodem = derive2 { name="Biodem"; version="0.4"; sha256="0k0p4s21089wg3r3pvyy9cxsdf4ijdl598gmxynbzvwpr670qnsh"; depends=[]; }; - BiodiversityR = derive2 { name="BiodiversityR"; version="2.11-3"; sha256="1ba19vlxpy88xcryf3xki3h49hbmkz9hf69lni6swl2rh1k7fx41"; depends=[Rcmdr rgl vegan vegan3d]; }; + BiodiversityR = derive2 { name="BiodiversityR"; version="2.12-1"; sha256="1dziagy01ksckpkvrfq2hiamb7k1g8sh2g93l9zr8nk7q0y690p4"; depends=[Rcmdr rgl vegan vegan3d]; }; Bioi = derive2 { name="Bioi"; version="0.2.10"; sha256="1ay8889490nfhxhh72fvk9z4h58xknm2b145xhbx2wbzj65zf9ib"; depends=[assertthat dplyr igraph Rcpp]; }; Biolinv = derive2 { name="Biolinv"; version="0.1-2"; sha256="0g9vw1jcsjawmddkixssm5gbncy17fdd6a3c5b2qd4hx81kxz8q9"; depends=[classInt fields raster sp spatstat]; }; Biopeak = derive2 { name="Biopeak"; version="1.0"; sha256="1l08m1jl8yygbdfzk8klpj1q2m7icvxi98vmk7akxs0sswjc6wd2"; depends=[cluster dbscan factoextra gplots RColorBrewer]; }; Bios2cor = derive2 { name="Bios2cor"; version="2.1"; sha256="04wk1cjrrxhpv1kdhd67r1qvjv268xxi0z0r105wy912110z9m6x"; depends=[bigmemory bio3d circular igraph]; }; + Biotech = derive2 { name="Biotech"; version="1.0.0"; sha256="01ddpxlgav8jjns0r23yjjynv80gwqcfalnz8gr553lm0wffdvj5"; depends=[dr4pl ggplot2 magrittr tidyverse]; }; BisRNA = derive2 { name="BisRNA"; version="0.2.2"; sha256="11jl5109nlm272vncprwplkz4kpvg7yx6yfnbjg47lfrsxcj8n0g"; depends=[MASS]; }; - BisqueRNA = derive2 { name="BisqueRNA"; version="1.0.2"; sha256="0j3z704hnfdmmbs8jzsnk7mvklpg5bs8jika810j8ygl97skdk5h"; depends=[Biobase lsei]; }; + BisqueRNA = derive2 { name="BisqueRNA"; version="1.0.4"; sha256="01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2"; depends=[Biobase limSolve]; }; BivGeo = derive2 { name="BivGeo"; version="2.0.1"; sha256="1sj52v1zmk425jw9acq9y0jdp3agx103yzf1bjbc5vrmk1x0i0qr"; depends=[]; }; BivRec = derive2 { name="BivRec"; version="1.2.0"; sha256="1q68qs2xm3qry7wc5ilrgjpyygfbcvvqy61yg98h5px302d1ixk3"; depends=[dplyr MASS Rcpp stringr survival]; }; BivRegBLS = derive2 { name="BivRegBLS"; version="1.1.1"; sha256="1kpl0pwm2g40pxrfbz2d95vcrm51flg6bgc83661349cmc9a2511"; depends=[ellipse]; }; @@ -485,7 +503,7 @@ in with self; { Bivariate_Pareto = derive2 { name="Bivariate.Pareto"; version="1.0.3"; sha256="11knwynqfxdz6zl7vzr48jpygcilsxarpmwphaajh62asdlg5w6p"; depends=[compound_Cox]; }; BlakerCI = derive2 { name="BlakerCI"; version="1.0-6"; sha256="0dcmnaf0k195caajy8h4qymyfj45cjwmkcgsbwv0z7x3h9sx5k6v"; depends=[]; }; BlandAltmanLeh = derive2 { name="BlandAltmanLeh"; version="0.3.1"; sha256="11p30zqb3f9ifk3v18dspg18sclz5zxjygy7hw8ccb4bcqhx68lm"; depends=[]; }; - Blaunet = derive2 { name="Blaunet"; version="2.0.8"; sha256="127nl041a1rbf8c4ffv8sbkn5y03ywaxkp51yd0sahs2anf415y4"; depends=[cairoDevice ergm foreign gWidgets gWidgetsRGtk2 haven network plot3D plot3Drgl rgl RGtk2 sna statnet_common]; }; + Blaunet = derive2 { name="Blaunet"; version="2.1.0"; sha256="0rbqbi57f4qkdd8b2zbw1i8afb6355ba4yv0zg6f410qqgxiq0c4"; depends=[cairoDevice ergm foreign haven network plot3D plot3Drgl rgl RGtk2 sna statnet_common]; }; Blendstat = derive2 { name="Blendstat"; version="1.0.3"; sha256="0d5zzqiav7b5prh8332kwqy6ga96lkbkdjis8qwifa11j5qa087a"; depends=[lattice MASS]; }; BlockCov = derive2 { name="BlockCov"; version="0.1.1"; sha256="1ilqd8kvhlq0nc1n4y7g0aiwran3kyqs8i143j6dv2wy3myn5x0l"; depends=[BBmisc dplyr magrittr Matrix Rdpack rlang tibble]; }; BlockFeST = derive2 { name="BlockFeST"; version="1.6"; sha256="0hj7a5as7nxbgjac7lbj6qfwffx3g8x8phpf9a55f1c9cdzi73a5"; depends=[BASIX]; }; @@ -501,38 +519,38 @@ in with self; { BondValuation = derive2 { name="BondValuation"; version="0.1.0"; sha256="1sgnf5a6rm1br6i82bmp7s044012bwfxa9yb6bjkq8kr83mf7i6v"; depends=[Rcpp timeDate]; }; BoolFilter = derive2 { name="BoolFilter"; version="1.0.0"; sha256="14z4fzf8p4wgi939qs6v39a3xizccjcx7j4szsydllpkvxbwggbw"; depends=[BoolNet Rlab]; }; BoolNet = derive2 { name="BoolNet"; version="2.1.5"; sha256="11fysc39vfk3zb9qklryi8gl42c3hqgzlvci4jj0zkqnm0v9amqk"; depends=[igraph XML]; }; - Boom = derive2 { name="Boom"; version="0.9.5"; sha256="0k76lh8v25v5k0axmgvkn85kf3d36klqqp9nd8hzzaiwkfjc60kh"; depends=[MASS]; }; - BoomSpikeSlab = derive2 { name="BoomSpikeSlab"; version="1.2.2"; sha256="0wz0b7ayhk97zva3mkxbpsf9ddsqdldzl1b1cv9b7qvakn8k7if9"; depends=[Boom]; }; + Boom = derive2 { name="Boom"; version="0.9.6"; sha256="0qzjj4dikphhpwcf1lkrf574bdf9j7c1xjpl8lpg4nqjjqd0hbwg"; depends=[MASS]; }; + BoomSpikeSlab = derive2 { name="BoomSpikeSlab"; version="1.2.3"; sha256="0ib9i5y1a5r1q1iy1vms95lh7f1naqn737nvhrg8na7isxp6jgir"; depends=[Boom]; }; BoostMLR = derive2 { name="BoostMLR"; version="1.0.2"; sha256="1iy8v9jc13wncz6z3rqlbxkf9lclq0qynp4m54b5xl35qz9xq676"; depends=[nlme Rcpp RcppArmadillo]; }; BootMRMR = derive2 { name="BootMRMR"; version="0.1"; sha256="07am80603pv1dh5ma3zb0idnslkzm5m3ym8sd1nhkh8zbc6qqmzs"; depends=[]; }; BootPR = derive2 { name="BootPR"; version="0.60"; sha256="03zw7hz4gyhp6iq3sb03pc5k2fhvrpkspzi22zks25s1l7mq51bi"; depends=[]; }; - BootWPTOS = derive2 { name="BootWPTOS"; version="1.2"; sha256="1860l11xg7444l3x42rq3636csla23gg0mi5in1zibjwn1ddc202"; depends=[fractal wavethresh]; }; BootstrapQTL = derive2 { name="BootstrapQTL"; version="1.0.2"; sha256="1qf93wmrh6znm81jr3gyn1sl8x4i6pdx811r70fg8k026fbfjn3a"; depends=[data_table foreach MatrixEQTL]; }; Boptbd = derive2 { name="Boptbd"; version="1.0.5"; sha256="1p786avc37yq5g01zh6sqx7b1rvbxrh6gbxsad4bdvr12cjdsss6"; depends=[igraph MASS Matrix]; }; - Boruta = derive2 { name="Boruta"; version="6.0.0"; sha256="1pp8zal1vhxlzdhl20phn39m3ffhw5glyqbcgwa0w14zw2mpm6hw"; depends=[ranger]; }; + Boruta = derive2 { name="Boruta"; version="7.0.0"; sha256="0y2w4wb45kfnzrxcrdsiwgal9fsnlr3wad1sqdc70qv8gp921xbg"; depends=[ranger]; }; BosonSampling = derive2 { name="BosonSampling"; version="0.1.1"; sha256="0wxn12h903a0mlrkrr3w4qd9ld2a4bifs95i98cnl2dsb76rwf12"; depends=[Rcpp RcppArmadillo]; }; - BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="6.0.0"; sha256="156wigny50lzqkv6y4f7mww90bijjzdcz2dhjaa4sdkfz5q3kvm3"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; }; + BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="6.0.1"; sha256="0wg81bg1bm9llir17v4xmsai3jgx3f10fqphwk450w4zr889fhy5"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; }; BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.1-2"; sha256="0vss3ib74cz2zn1afmrvllawghj9z2ay4x1ysvk4rqvjmiia4a2i"; depends=[brglm gtools lme4 qvcalc]; }; Branching = derive2 { name="Branching"; version="0.9.4"; sha256="1c209gdasm7qipv2gg4d1hr0jmhnzz5rddgjxb7xacazc0c2mhff"; depends=[]; }; + BreakPoints = derive2 { name="BreakPoints"; version="1.2"; sha256="125fvzkmfnriyd4y4nywj5ihm766xlsyi7dpnq57fa9d38ffbyf2"; depends=[MASS zoo]; }; Brobdingnag = derive2 { name="Brobdingnag"; version="1.2-6"; sha256="1m3ajvcksqfck5l5hj5xiflj4ry6d896ybv4f0xxks8chgnwmv0r"; depends=[]; }; BrownDog = derive2 { name="BrownDog"; version="0.2.1"; sha256="0wnf1jcf4cakbvj9j1l7jk9mq7gd4j1il1ha2vglghqn04f27938"; depends=[httpuv jsonlite RCurl]; }; - Brq = derive2 { name="Brq"; version="2.5"; sha256="0b7xsamzvg2z746qrpq1nc9181awr7darnk06xi4wzqygbxgnll2"; depends=[]; }; + Brq = derive2 { name="Brq"; version="3.0"; sha256="1gppp959i9kr8pdvn336v28gg9h0jl8qg6pqvzvp5wf257z8m4l8"; depends=[]; }; Brundle = derive2 { name="Brundle"; version="1.0.9"; sha256="0z17wgmi272738n8pn6r60v5gbg8cbmwhc94s8f3vipa44h690bc"; depends=[DESeq2 DiffBind lattice Rsamtools]; }; - BsMD = derive2 { name="BsMD"; version="2013.0718-1"; sha256="06w1dl5zp1cgjhk3m2zz6xsmcfwdk6ar3gmxdn96v71mqnhv81v1"; depends=[]; }; + BsMD = derive2 { name="BsMD"; version="2020.4.30"; sha256="1842a4hq7pa3bxw18hnw8fva0x3jzi27rkrib92idsc92n0r44n2"; depends=[]; }; Buddle = derive2 { name="Buddle"; version="2.0.1"; sha256="0hi516cbl93z00jpdgyp3j5hz0xf594vn65p6ahpffwzh1l8s1cf"; depends=[plyr Rcpp RcppArmadillo]; }; BullsEyeR = derive2 { name="BullsEyeR"; version="0.2.0"; sha256="1p8b5w818zi7zs0n13cc3sw8z0z9mfr5cn5y5icsx1jam5amppci"; depends=[Matrix NLP slam tm topicmodels]; }; BurStFin = derive2 { name="BurStFin"; version="1.02"; sha256="16w2s0bg73swdps9r0i8lwvf1najiqyx7w7f91xrsfhmnqkkjzka"; depends=[]; }; BurStMisc = derive2 { name="BurStMisc"; version="1.1"; sha256="0cyi42zkn2dby162x9f95b3hpqxbzx25s7nahb4p86r60xj3a5c0"; depends=[]; }; BusinessDuration = derive2 { name="BusinessDuration"; version="0.2.0"; sha256="17923n1r3n8kp7qqzr2dv8ffax355yyc3b9f6mv2hxy6k31hrrb8"; depends=[chron]; }; - BuyseTest = derive2 { name="BuyseTest"; version="1.8.5"; sha256="1czgkp1n9rvc9v8vzb991pn6hw1wx77gjrdz5bfgi2whzdj2dgn0"; depends=[data_table doParallel foreach lava prodlim Rcpp RcppArmadillo]; }; + BuyseTest = derive2 { name="BuyseTest"; version="2.1.3"; sha256="1yp7w78ic9phcdfp82finv0vgf4zgqsykdajxdcy0nv022l8vr7q"; depends=[data_table doParallel foreach lava prodlim Rcpp RcppArmadillo]; }; Bvalue = derive2 { name="Bvalue"; version="1.0"; sha256="17zlllzjrcq4grggal3hlg384990n62wnflr2g21fa6hcnglwy7d"; depends=[]; }; - C443 = derive2 { name="C443"; version="1.0.0"; sha256="0d04769m9kkjqpj1cgfhqrri893nwi6qn7fz63z5pkym5cig5yyi"; depends=[cluster ggplot2 gridExtra igraph MASS partykit qgraph RColorBrewer reshape2 rpart]; }; - C50 = derive2 { name="C50"; version="0.1.3"; sha256="01cbkilvp18r4f2khkj48w0znngvqckng91530kqqdqr2wc1ssac"; depends=[Cubist partykit]; }; - CA3variants = derive2 { name="CA3variants"; version="2.0"; sha256="1wnc9qfcligpsi5ycmzw0igm14h6lvf4vd82aygnas6q41vnypwz"; depends=[ggplot2 ggrepel gridExtra multichull]; }; + C443 = derive2 { name="C443"; version="3.0.0"; sha256="1wfj5avyrqf60g0vdfk6dmrs7dzp3zq22g9j9j9j78hcykbnjdj4"; depends=[cluster ggplot2 gridExtra igraph MASS partykit plyr qgraph RColorBrewer reshape2 rpart]; }; + C50 = derive2 { name="C50"; version="0.1.3.1"; sha256="0ikm0awb6v5iignr1izmcaw6l32gyn3rsinq58panl7gvsl1n58b"; depends=[Cubist partykit]; }; + CA3variants = derive2 { name="CA3variants"; version="2.5"; sha256="0n9zzca5vdp09yp0c9znph6av28pc33lrm5hbfijs5riplp1ixa1"; depends=[ggforce ggplot2 ggrepel gridExtra multichull plotly]; }; CADFtest = derive2 { name="CADFtest"; version="0.3-3"; sha256="06bwv728ckalzibxginzfica24w18m4g87i0i064m3q89ghmnlqm"; depends=[dynlm sandwich tseries urca]; }; CADStat = derive2 { name="CADStat"; version="3.0.8"; sha256="0wdglw1vyd5gz70r9ma0mwshvizv39nb4ahp8pvr70c4qqzsfhc0"; depends=[bio_infer car gdata gmodels JavaGD JGR lattice MASS quantreg rJava rpart XML]; }; CAISEr = derive2 { name="CAISEr"; version="1.0.16"; sha256="08br6hdpgf9y2fix299diwd8r3q4gylpbzll4knpxq0vi18a3hz3"; depends=[assertthat ggplot2 gridExtra pbmcapply]; }; - CALF = derive2 { name="CALF"; version="0.2.0"; sha256="12w1vr0rk6m4lv6zvqrf45k81d301ln1253wyy9xi6mv1hkabg0v"; depends=[ggplot2]; }; + CALF = derive2 { name="CALF"; version="1.0.15"; sha256="0rxdfd23kkyhwz2qc9zilvrvr24xlgd5phkh0164b0x0d96iffmz"; depends=[data_table ggplot2]; }; CAMAN = derive2 { name="CAMAN"; version="0.74"; sha256="0d932fbqzlxlhn7m8zfx7wr02pc7fm8398rym1jh2cdy2fk5im08"; depends=[mvtnorm sp]; }; CANSIM2R = derive2 { name="CANSIM2R"; version="1.14.1"; sha256="1dnzbd9lyqj3w80lx12qxcsbmv8wy6hxknyi5ijp99cfv7kaq1kc"; depends=[downloader Hmisc reshape2]; }; CARBayes = derive2 { name="CARBayes"; version="5.2"; sha256="08ajcgc0ycngcl2d757yjz1mpki88aq2jp07nr64j8aqpych5lw2"; depends=[CARBayesdata coda dplyr GGally leaflet MASS matrixcalc MCMCpack Rcpp rgdal sp spam spdep truncnorm]; }; @@ -540,16 +558,16 @@ in with self; { CARBayesdata = derive2 { name="CARBayesdata"; version="2.1"; sha256="09rjxdrbpnqm6gv9g1jxh91jmww345wi9vlhb4s1n6b3xnh44fhs"; depends=[shapefiles sp]; }; CARE1 = derive2 { name="CARE1"; version="1.1.0"; sha256="1zwl4zv60mrzlzfgd7n37jjlr0j918a8ji36n94s5xw8wwipiznw"; depends=[]; }; CARLIT = derive2 { name="CARLIT"; version="1.0"; sha256="04kpjfps4ydf8fj75isqp16g1asdsyf8nszhbfkpw1zxkrmiksyp"; depends=[]; }; - CARRoT = derive2 { name="CARRoT"; version="2.5.0"; sha256="1ijmj95gbxa2179bscbbz6qqaqjk7a5i6m4xla5z6h3vrddssxmz"; depends=[doParallel foreach nnet Rdpack]; }; + CARRoT = derive2 { name="CARRoT"; version="2.5.1"; sha256="0z5vrsyzfiv1nzggqmrgybfyjg0wdcdag4xjg0f70p5x91fg1cqk"; depends=[doParallel foreach nnet Rdpack]; }; CARS = derive2 { name="CARS"; version="0.2.2"; sha256="18l2bhfwma24q1zg1y1xmlcmnbzjqmmny3h7s179kslagnh3kmsj"; depends=[np]; }; - CASMAP = derive2 { name="CASMAP"; version="0.6.0"; sha256="1z321l34da5ggwmbggs9d8m96syra1jm29gj68lfhd7ikbpmw96w"; depends=[Rcpp]; }; - CAST = derive2 { name="CAST"; version="0.4.0"; sha256="0s92a1ybjqi9d0f7xrk77jg42q3allizb627h28ndg6nj02h23ap"; depends=[caret ggplot2]; }; + CASMAP = derive2 { name="CASMAP"; version="0.6.1"; sha256="1447d4gflan2093fb68inb2ysx5svb9vhnjc7lnkgpjsiam4p8yy"; depends=[Rcpp]; }; + CAST = derive2 { name="CAST"; version="0.4.2"; sha256="0dn5lnviyyhhn8mjd2n43gbkh89v49x3x0r3m8zw8f9hga7rpzb4"; depends=[caret FNN ggplot2 plyr reshape]; }; CATT = derive2 { name="CATT"; version="2.0"; sha256="12xdspl1gbf51snyrl44nn7alfyccdfihibkgvzr66lrby8b8fhg"; depends=[]; }; - CATTexact = derive2 { name="CATTexact"; version="0.1.0"; sha256="0mklkmay9ph4d0z2l1gcg0lj429xkyhmz7srdil5rgwqxx9dnqs8"; depends=[]; }; + CATTexact = derive2 { name="CATTexact"; version="0.1.1"; sha256="07ciln6cfvqya7dwwn6mhd9lk2833hypm4badizgfi2k749d1p00"; depends=[]; }; CATkit = derive2 { name="CATkit"; version="3.3.3"; sha256="01q2ssyg0jcjgahaslfgpakjsv2wil654lc6xrg5xbbrkx7ccb90"; depends=[assertr CombMSC Hmisc magic MASS png rtf season signal]; }; - CAinterprTools = derive2 { name="CAinterprTools"; version="1.0.0"; sha256="1ia4qfvj0nzxi6pwqnha2vpfcx3qwaw4vrjqiza11sai274j0pjy"; depends=[ca classInt cluster FactoMineR ggplot2 ggrepel Hmisc RcmdrMisc reshape2]; }; + CAinterprTools = derive2 { name="CAinterprTools"; version="1.1.0"; sha256="07rvi91ysqyfwagmip0cnqjahv1n8slicd5hznqf5v3l841xh7p7"; depends=[ca classInt cluster FactoMineR ggplot2 ggrepel Hmisc RcmdrMisc reshape2]; }; CAvariants = derive2 { name="CAvariants"; version="5.5"; sha256="0bxifvhpjay18k6gkppypc1d0zaln1zhnxabvvld0pz4h59s2hlv"; depends=[ggforce ggplot2 ggrepel gridExtra plotly]; }; - CB2 = derive2 { name="CB2"; version="1.3.1"; sha256="14jx583lgm2yisdz3mkswpgzxz5lb86c9x66b94cn9mrhcnqlfb7"; depends=[dplyr ggplot2 glue magrittr metap pheatmap R_utils Rcpp RcppArmadillo readr stringr tibble tidyr]; }; + CB2 = derive2 { name="CB2"; version="1.3.4"; sha256="0431bd956hmkrhs9x845vjwbzzwzd7n9nfx9y95mv6qv84zd4wv2"; depends=[dplyr ggplot2 glue magrittr metap pheatmap R_utils Rcpp RcppArmadillo readr stringr tibble tidyr]; }; CBCgrps = derive2 { name="CBCgrps"; version="2.7"; sha256="1hqndrz3snir3pibqsbyzgbllgmdiprgq27a31vl29vkswpiwwsm"; depends=[nortest]; }; CBDA = derive2 { name="CBDA"; version="1.0.0"; sha256="0qm77vvqjgi83i8izly995ziv9ski8kgzqyq4g81i2k7a5dp8vxv"; depends=[doParallel foreach prettydoc SuperLearner]; }; CBPS = derive2 { name="CBPS"; version="0.21"; sha256="0av9lgdn9z57xl9cp53pi9nq971a6fj4przczw7sdb5saml3yr30"; depends=[glmnet MASS MatchIt nnet numDeriv]; }; @@ -558,7 +576,7 @@ in with self; { CC = derive2 { name="CC"; version="1.0"; sha256="189si37ggichqmzy8m686zw1cijix7yfy8ma5iqpnq1q9vm3pcvy"; depends=[]; }; CCA = derive2 { name="CCA"; version="1.2"; sha256="00zy6bln22qshhlll0y0adnvb8wa1f7famqyws71b6pcnwxki5ha"; depends=[fda fields]; }; CCAGFA = derive2 { name="CCAGFA"; version="1.0.8"; sha256="1jxb6d1h5p97wnr45s1fsspksqn771nib415ihxi4vj5w8s94j8b"; depends=[]; }; - CCAMLRGIS = derive2 { name="CCAMLRGIS"; version="3.0.3"; sha256="0nwz007hn937y6ckkv7lcabyhcj7cvpy23hr03naggdbd4ql0gjf"; depends=[dplyr geosphere magrittr raster rgdal rgeos sp]; }; + CCAMLRGIS = derive2 { name="CCAMLRGIS"; version="3.0.5"; sha256="1sdgpp96ja4lkkr276aj0d5f5gipayp7fdq7dfd48iraqyb8y2ph"; depends=[dplyr geosphere magrittr raster rgdal rgeos sp]; }; CCM = derive2 { name="CCM"; version="1.2"; sha256="1mhl7yppniybdffylddbbb65n7gmv029fb46wlsxm4yf2xkplmwy"; depends=[]; }; CCP = derive2 { name="CCP"; version="1.1"; sha256="07jxh33pb8llk1gx4rc80ppi35z8y1gwsf19zrca9w91aahcs8cx"; depends=[]; }; CCTpack = derive2 { name="CCTpack"; version="1.5.2"; sha256="1kkxsk9x4jz2bvldmba7fsri3zc1cjz15z0xicjmfc7lj72ngdig"; depends=[MASS mvtnorm polycor psych R2jags rjags]; }; @@ -576,22 +594,24 @@ in with self; { CEoptim = derive2 { name="CEoptim"; version="1.2"; sha256="0bbjrhl63cbx1rsr5gclbqhjpnjid8ynk2ygaf1chf8z381n7650"; depends=[MASS msm sna]; }; CFC = derive2 { name="CFC"; version="1.1.2"; sha256="0k0685cgsd0lm7id6h216r4x236xn3nqj4h906qn2i0kvwmx4nda"; depends=[abind doParallel foreach Rcpp RcppArmadillo RcppProgress survival]; }; CFF = derive2 { name="CFF"; version="1.0"; sha256="04z3q0s4b1yns5l7lplw8qrcdjzsdy9crnhakyzd6r449hjfsvnz"; depends=[]; }; - CGE = derive2 { name="CGE"; version="0.3.1"; sha256="0bn88m0mls7qyv40l2nd1g1hxjdj2rjxwaf9a08xigicix48j7i6"; depends=[]; }; + CFilt = derive2 { name="CFilt"; version="0.1.0"; sha256="1kxpw91rsnd6c962ldvvn3xylc0sadb69yi5gv3zkzj9isncv2zy"; depends=[]; }; + CGE = derive2 { name="CGE"; version="0.3.3"; sha256="0q1fv62159cx9z25488fxf6a6fi1m59hdh60ldypsjwil77q0s3i"; depends=[]; }; CGGP = derive2 { name="CGGP"; version="1.0.2"; sha256="0z71sl1vsz3f84scxa25444fb6wm1jbd05syapggjxnjcglmiq45"; depends=[Rcpp RcppArmadillo]; }; CGManalyzer = derive2 { name="CGManalyzer"; version="1.3"; sha256="1wmp5im18s447rjkj891skrm7558xkqlbx43n9hyxiqg49zq1ng9"; depends=[]; }; CGP = derive2 { name="CGP"; version="2.1-1"; sha256="05a6gydlb99yk2jpy2hyg4c30hqyp8dg2i9dmbjc1n5cmgpg3im9"; depends=[]; }; - CGPfunctions = derive2 { name="CGPfunctions"; version="0.6.0"; sha256="0n3p49nnm2lj8gzaalrkfkjglxb5bnlgc8cxfgw3jiizikj3dla5"; depends=[BayesFactor broom car DescTools dplyr forcats ggmosaic ggplot2 ggrepel paletteer partykit purrr rlang scales sjstats stringr tidyr]; }; + CGPfunctions = derive2 { name="CGPfunctions"; version="0.6.2"; sha256="05f1h29hd1mr2h68rz6yc1ickkmbv12z2xav8gppqqj5657zxnhf"; depends=[BayesFactor broom car DescTools dplyr forcats ggmosaic ggplot2 ggrepel paletteer partykit purrr rlang scales sjstats stringr tidyr]; }; CHCN = derive2 { name="CHCN"; version="1.5"; sha256="18n8f002w0p0l1s5mrrsyjddn10kdbb6b7jx1v9h1m81ifdbv0xb"; depends=[bitops RCurl]; }; CHFF = derive2 { name="CHFF"; version="0.1.0"; sha256="0jv75p1bnwsad2vpxf1zwq97al9xxhk2hpnpsilf0jn0w7g9b2d3"; depends=[]; }; CHMM = derive2 { name="CHMM"; version="0.1.1"; sha256="07fdvnwhblwvljbl2z0vs42nwki67yl5ly3fj40p50k3rnqqmavj"; depends=[mclust]; }; + CHNCapitalStock = derive2 { name="CHNCapitalStock"; version="0.0.2"; sha256="187rkb7bi5lm4xfg6ibw3n1x5cgrbz30d9x3i1jdyhg619xgg8nl"; depends=[dplyr magrittr]; }; CHNOSZ = derive2 { name="CHNOSZ"; version="1.3.6"; sha256="0imfyvagvxqffvz3ksvkmfc2lbfli5lsxvnqby7iw2dp1gzpaxqc"; depends=[]; }; CHsharp = derive2 { name="CHsharp"; version="0.4"; sha256="19mb5zzi9x4pm2z9jbha5dz4k5f1iqjv31aisyv4qh14k5ysdz2i"; depends=[KernSmooth scatterplot3d]; }; CIAAWconsensus = derive2 { name="CIAAWconsensus"; version="1.3"; sha256="0yhay4fp5lyf0sdcf807yvys17qz9cr5f5ikim25mq336p7fp03x"; depends=[Matrix mvtnorm numDeriv stringr]; }; CIEE = derive2 { name="CIEE"; version="0.1.1"; sha256="03kq9cp0v41y0r2l9j5imcrsail2xsvlzhhhsrw454d4s9gqdql9"; depends=[survival]; }; CIFsmry = derive2 { name="CIFsmry"; version="1.0.1.1"; sha256="1m2m2zvg9ghy3bm2sll7jp4xm2vw58kc5xaxd2c9k82771m3a4j0"; depends=[]; }; CIM = derive2 { name="CIM"; version="1.0.0"; sha256="02l8rspiiv6vj6k0q6wpiazny3f2s4dsivsm7zb9cm90qh1rv2d7"; depends=[]; }; - CIMTx = derive2 { name="CIMTx"; version="0.1.0"; sha256="0z2xxmmlybgl3ydyhkdkyd9frwi8ddqi89dfwa0rdl6gg59rawmk"; depends=[arm BART car class dplyr gam magrittr Matching nnet SuperLearner tidyr tmle twang WeightIt]; }; - CINID = derive2 { name="CINID"; version="1.2"; sha256="0pkgzi2j0045p10kjvnq8f4j1agzrqfw0czvvfrzj9yjfpj8xc99"; depends=[]; }; + CIMTx = derive2 { name="CIMTx"; version="0.2.0"; sha256="1l9wnywgmljawbj2q4g93dlh4mx5zgvm7nj9dan3dvvimb1v9vl0"; depends=[arm BART car class dbarts dplyr gam magrittr Matching nnet SuperLearner tidyr tmle twang WeightIt]; }; + CINID = derive2 { name="CINID"; version="1.3-0"; sha256="06n5bwjr44rx0m12xradzaca26rvh01mlimbn0gr3jfzkmyj2f1g"; depends=[]; }; CINNA = derive2 { name="CINNA"; version="1.1.53"; sha256="0mp7fvsxiri6454s7hlpsy9r3ysy6vdb3yslnizgqi38rb17phik"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph intergraph network pheatmap plyr qdapTools Rtsne sna viridis]; }; CISE = derive2 { name="CISE"; version="0.1.0"; sha256="10mbi4v8dfdc9ngnrrmxpng8fnig5m8nv7799jksbcf6pnj8yv51"; depends=[far gdata glmnet MASS Matrix rARPACK]; }; CITAN = derive2 { name="CITAN"; version="2015.12-2"; sha256="08h91q7529q04izgqw3ahm4r0zjpwnwyc0vynykvv9fz2fkbk7wb"; depends=[agop DBI hash RGtk2 RSQLite stringi]; }; @@ -600,30 +620,30 @@ in with self; { CKAT = derive2 { name="CKAT"; version="0.1.0"; sha256="03vxl91z2mhi1h0xgcwhw63mvj56156zgphm16ijdff63pqxaryr"; depends=[CompQuadForm]; }; CKLRT = derive2 { name="CKLRT"; version="0.2.3"; sha256="1d8sg3ncns3fpjaghz1h1z9nfrl31v09xijrzzsias8xjrpi191b"; depends=[MASS mgcv nlme Rcpp RcppEigen]; }; CLA = derive2 { name="CLA"; version="0.95-1"; sha256="0h3b1wmmfhajdgd2nmm1wkrg83fwbwj4yphjqin8yw9a0izqf0mz"; depends=[]; }; - CLME = derive2 { name="CLME"; version="2.0-11"; sha256="0p43nnnphzaxrna7y57kgjy2qih535k45s3hxlj89p1x0yhy0mga"; depends=[isotone lme4 MASS nlme openxlsx prettyR shiny stringr]; }; + CLME = derive2 { name="CLME"; version="2.0-12"; sha256="161maq22r8wbd6c2dc8b47mh6991vc4iqmjr8g6yqb5gcwca8zhg"; depends=[isotone lme4 MASS nlme openxlsx prettyR shiny stringr]; }; CLONETv2 = derive2 { name="CLONETv2"; version="2.1.0"; sha256="15wqs4hdxyfdglfr4dkm4rndz15rbq7dxlq1zq3vfslvi1qxaxdb"; depends=[arules ggplot2 ggrepel sets]; }; CLSOCP = derive2 { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; }; CLUSTShiny = derive2 { name="CLUSTShiny"; version="0.1.0"; sha256="19mh5g1ylvlab4xjxw7girxk9zkpxxczhbfijf11b592hbw0qxqk"; depends=[cluster dplyr klaR MASS psycho rmarkdown shiny]; }; + CLVTools = derive2 { name="CLVTools"; version="0.6.0"; sha256="165b8mxmvfm7j2v10c0pn451fy05gy90vlxqbm3n1m4il0ynlhs3"; depends=[data_table foreach ggplot2 lubridate MASS Matrix optimx Rcpp RcppArmadillo RcppGSL]; }; CMC = derive2 { name="CMC"; version="1.0"; sha256="1r9a5k79fyw01yiwxq02327hpn4l1v2lp0958jj9217wxmhn3pr5"; depends=[]; }; CMF = derive2 { name="CMF"; version="1.0.2"; sha256="0hm6srsylg1syz86iz93qyxr7xgh1qvmp27k2hgkj1z1z8lsw1ca"; depends=[Rcpp]; }; CMLS = derive2 { name="CMLS"; version="1.0-0"; sha256="1542qqsl6sksrcpwhnn55d260hkbmy4ikd0v2an96yxk5w95spvn"; depends=[quadprog]; }; CMShiny = derive2 { name="CMShiny"; version="0.1.0"; sha256="0ciis3930yhn4dmazsg2yp7wi9hdfj5slr032x8qfllxis7m4k0w"; depends=[caret e1071 epitools Matrix rmarkdown shiny shinyMatrix]; }; CMapViz = derive2 { name="CMapViz"; version="0.1.0"; sha256="1s7xyp13p7fpbq0bghk07dfv90339kxs7k3343jqhrn8djf3as67"; depends=[dplyr ggplot2 readxl reshape2 scales stringr]; }; CMatching = derive2 { name="CMatching"; version="2.3.0"; sha256="0q0hplhsamj46z7g6pa7yg1bap5822ka1419yhcip551djhvnpmv"; depends=[lme4 lmtest Matching multiwayvcov]; }; - CMplot = derive2 { name="CMplot"; version="3.6.0"; sha256="1pwxbkslch10pyzyldj6rl32m0qjpbawpxv4f4z1jsbm1gjq1k5z"; depends=[]; }; + CMplot = derive2 { name="CMplot"; version="3.6.2"; sha256="13y05j5gsdc712fn7yvcz5nx2pbcdvl201hfb6jzpvl86qx2l0j1"; depends=[]; }; CNLTreg = derive2 { name="CNLTreg"; version="0.1-2"; sha256="07yi0ajil1113663v3gp5d3453r4l9qm442jnpydx4ygvjk7m2ha"; depends=[adlift miscTools nlt]; }; CNLTtsa = derive2 { name="CNLTtsa"; version="0.1-2"; sha256="1vy0jjg6s8yvsvkx4pin183y5bnikm5cmjcpa9znz9dj1w6hwr5r"; depends=[adlift CNLTreg fields nlt]; }; CNOGpro = derive2 { name="CNOGpro"; version="1.1"; sha256="1frsmhfqrlg1vsa06cabqmrzngq4p5gqwyb9qgnsgg81a9ybm6l8"; depends=[seqinr]; }; - CNVScope = derive2 { name="CNVScope"; version="3.0.5"; sha256="0y131sk4dihfnqz30c2jz2pkzk53f266afr56y097vnbhzsqpaiw"; depends=[BiocManager biomaRt BSgenome_Hsapiens_UCSC_hg19 circlize data_table doParallel dplyr DT foreach GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 heatmaply HiCseg htmltools htmlwidgets igraph InteractionSet IRanges jointseg logging magrittr Matrix matrixStats numbers OpenImageR plotly plyr RCurl reshape2 rslurm rtracklayer S4Vectors shiny shinycssloaders shinyjs shinythemes spatialfil stringr tibble tidyr visNetwork]; }; + CNVScope = derive2 { name="CNVScope"; version="3.1.8"; sha256="1qgnwivb66bw1m5f3r5r3r4a8439pja0w44rdvbpdlwfdfk23d0b"; depends=[biomaRt data_table doParallel dplyr foreach GenomicInteractions ggplot2 jointseg magrittr Matrix matrixStats numbers OpenImageR plotly plyr RCurl reshape2 rtracklayer shiny stringr tidyr]; }; CNprep = derive2 { name="CNprep"; version="2.0"; sha256="08dpjikx3ldqzw2kwb12q0kbw15qzl09srjdfs0sz9si0x6bfxs6"; depends=[mclust rlecuyer]; }; CNull = derive2 { name="CNull"; version="1.0"; sha256="14hy86zg18hqxi63bfzrpkz70yrzfxp2v2pva5xnrvx9dmlyz820"; depends=[ape Matrix PhyloMeasures Rcpp]; }; COBRA = derive2 { name="COBRA"; version="0.99.4"; sha256="1r1cw12d7c148pcgcg08bfsr1q1s736kfpyyss6b4d7ny7wgmqy4"; depends=[]; }; COCONUT = derive2 { name="COCONUT"; version="1.0.2"; sha256="1qjrhxn6dkxyimdca3nslaiw3hncfpk1pk4v01mcrnz550z001nz"; depends=[]; }; COMBAT = derive2 { name="COMBAT"; version="0.0.4"; sha256="0m700pl33frdpc9y16y4zyh1ixpardh0r5kmz8a78jrh1acn30id"; depends=[corpcor mvtnorm]; }; COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.7.0"; sha256="144vf3vfn5msc8p67q65frza8xyi9nqccjq47fnv33w5h0d9wlxj"; depends=[Rcpp]; }; - CONCUR = derive2 { name="CONCUR"; version="1.2"; sha256="1badxbc8lb5g52anl4dzrd3bpws8j7bx1c4mnzb6862g9jmr7280"; depends=[CompQuadForm dplyr mgcv]; }; + CONCUR = derive2 { name="CONCUR"; version="1.3"; sha256="1xkk5mbkysgrclv7km2pf4bnnm99a9q0dkb68vllrdmzsphjmxp9"; depends=[CompQuadForm dplyr mgcv]; }; CONDOP = derive2 { name="CONDOP"; version="1.0"; sha256="0si9nm93wk9lif3r6jh2nxr4sjq1iqyfavbykja3zcy6yn05i19s"; depends=[earth GenomeInfoDb GenomicRanges IRanges mclust plyr randomForest rminer S4Vectors seqinr]; }; - CONS = derive2 { name="CONS"; version="0.1.1"; sha256="0w0rca4z3hij0lbabpdnhv2lb52gx574g7bqp6q16772pi4685hf"; depends=[FactoMineR gridExtra gWidgets pander raster readxl REdaS]; }; CORE = derive2 { name="CORE"; version="3.0"; sha256="0wq9i7nscnzqiqz6zh6hglm7924261bw169q3x6l9i6jgqhvn32d"; depends=[]; }; CORElearn = derive2 { name="CORElearn"; version="1.54.2"; sha256="0nsqmmwngv04dp4wpm9irybiv7bk35x78b8ib4mgk11yzm0wl1nn"; depends=[cluster nnet plotrix rpart rpart_plot]; }; CORM = derive2 { name="CORM"; version="1.0.2"; sha256="0g5plafx2h1ija8jd6rxvy8qsrqprfbwbi1kq1p4jdr9miha20nv"; depends=[cluster limma]; }; @@ -631,7 +651,7 @@ in with self; { COST = derive2 { name="COST"; version="0.1.0"; sha256="06xgnsccd621ihlrdmnnh14vh83q1r2bnp3iqi7vp5553b3y4l3w"; depends=[copula mvtnorm]; }; COUNT = derive2 { name="COUNT"; version="1.3.4"; sha256="02f7779fy0d2bql88x5v9csbxljhnyvl8wb8h83xrmwl7kaxsdpy"; depends=[MASS msme sandwich]; }; COUSCOus = derive2 { name="COUSCOus"; version="1.0.0"; sha256="1ykqi72v8v1b3g9qy6h34dvk5fynzf1rl2mby65p08axmaba5798"; depends=[bio3d matrixcalc]; }; - COVID19 = derive2 { name="COVID19"; version="1.0.0"; sha256="05nnpgiykyi2lk5pddxpwv9j64gvp0b9mb9n760nf226p2f0m7w4"; depends=[dplyr remotes tidyr]; }; + COVID19 = derive2 { name="COVID19"; version="2.2.0"; sha256="0h4a1r84xb5d97p4v24xp518jv08kb9798fcnxrzy059cqv2dip8"; depends=[dplyr tidyr wbstats]; }; CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; }; CPAT = derive2 { name="CPAT"; version="0.1.0"; sha256="0zygncwww3cazwmx06bhzq0g41xcqfpw307azdhygc8jmcy6qj71"; depends=[purrr Rcpp RcppArmadillo Rdpack]; }; CPBayes = derive2 { name="CPBayes"; version="1.0.0"; sha256="0m9hy14xmaa0lswn2dlrjvqcsg14smxy3w1nmy48l3af1c2kjnxv"; depends=[forestplot MASS mvtnorm purrr]; }; @@ -644,7 +664,6 @@ in with self; { CRANsearcher = derive2 { name="CRANsearcher"; version="1.0.0"; sha256="09gw1s28gb0l2cn4w3asl6zlr7wfacxwafbdrayajwckyfkjl5dl"; depends=[curl dplyr DT lubridate miniUI shiny shinyjs stringr]; }; CREAM = derive2 { name="CREAM"; version="1.1.1"; sha256="1lccpwn6c5pmykgf689gvvpqdcilkys4vclpxjhllhanjrfhcs3q"; depends=[]; }; CRF = derive2 { name="CRF"; version="0.4-3"; sha256="0jlcc1ffd2z7sz1szbi4vrp5rihmcp18bsw27x02ivi6l21nyivf"; depends=[Matrix]; }; - CRFCSD = derive2 { name="CRFCSD"; version="3.1"; sha256="0sqhdd6rijfshvz1p02lz8ql1nwl9lqfpf3nzy719s94hjhd3f3r"; depends=[numDeriv orthopolynom Rcpp RcppArmadillo splines2]; }; CRM = derive2 { name="CRM"; version="1.2.4"; sha256="0jv2z1y3zyj1m86p4pmqww58hj8pvid1ss6ym67y46n9srzxsmj5"; depends=[]; }; CRPClustering = derive2 { name="CRPClustering"; version="1.2"; sha256="19m7jg6ck2gqmry2p35h3vv8msm4w1x7qwwmm746r646q7w9ylml"; depends=[dplyr lucid MASS mvtnorm png randomcoloR]; }; CRTSize = derive2 { name="CRTSize"; version="1.0"; sha256="1d45zx26bf0zk0piham69gvb8djqf48g6iisbldv0ds3s2hhcsin"; depends=[]; }; @@ -654,7 +673,7 @@ in with self; { CSESA = derive2 { name="CSESA"; version="1.2.0"; sha256="0pv6iabq1w22qbhlsbckdvva4n7igpzrjnrahmq83a6wxgvjbf5j"; depends=[Biostrings]; }; CSFA = derive2 { name="CSFA"; version="1.2.0"; sha256="1nkyhk8qhrrlx8v26yw86l954m4xfcxma4pqbhgw95jvqql5h3li"; depends=[elasticnet fabia FactoMineR pls randomcoloR snowFT]; }; CSMES = derive2 { name="CSMES"; version="1.0.0"; sha256="1ddr2b39d7nwan6dqf5xx9h6gzfxxk50r1d9vbpb9hc8a7d15vnp"; depends=[caTools data_table mco ROCR rpart zoo]; }; - CSTools = derive2 { name="CSTools"; version="3.0.0"; sha256="1gdvkpq8iji0kxlk4ka10kq7i2qn3r5jcg2c5isf3zjkyjn2f218"; depends=[abind ClimProjDiags data_table ggplot2 maps multiApply ncdf4 plyr qmap rainfarmr reshape2 s2dverification verification]; }; + CSTools = derive2 { name="CSTools"; version="3.1.0"; sha256="11mw7kl85m5l6ixlsbbmb9rfy6z6mfjdbgwmwrggjn4wbb0d0p76"; depends=[abind ClimProjDiags data_table ggplot2 maps multiApply ncdf4 plyr qmap rainfarmr RColorBrewer reshape2 s2dv s2dverification verification]; }; CSclone = derive2 { name="CSclone"; version="1.0"; sha256="0lqsqsgh2sf44fr1r7g179556v294yr1wy7x4320g7adxshrwyh5"; depends=[DNAcopy lpSolve mcclust moments]; }; CSeqpat = derive2 { name="CSeqpat"; version="0.1.2"; sha256="1nqk873cagpn4fba4rmyzb6hni1p5lqcvsr9givrcm0gfx756w1h"; depends=[NLP tm]; }; CTAShiny = derive2 { name="CTAShiny"; version="0.1.0"; sha256="18qw8nx1r4gwlxj9zxn4hllpn29fv3i4fgwyl5fh3qsv9hmbvi0x"; depends=[epitools rpivotTable shiny shinyMatrix]; }; @@ -677,12 +696,12 @@ in with self; { CVglasso = derive2 { name="CVglasso"; version="1.0"; sha256="1bh09cd0yabhqv5yfahhvayx3f09yqapzl1yr9nc9xqwyx1d0cfd"; depends=[doParallel dplyr foreach ggplot2 glasso]; }; CaDENCE = derive2 { name="CaDENCE"; version="1.2.5"; sha256="1z3p5y1l67r470x6wrhnyjvw1ndppcm08fpj99x122j7kn6byff2"; depends=[pso]; }; CaPO4Sim = derive2 { name="CaPO4Sim"; version="0.1.0"; sha256="1ihkx0swj9adz2pgfm9c20pcipq748czkyg76q3y0zk1j987nfik"; depends=[DT htmltools magrittr plotly purrr rintrojs shiny shinycssloaders shinydashboard shinydashboardPlus shinyjqui shinyjs shinyWidgets visNetwork]; }; - Cairo = derive2 { name="Cairo"; version="1.5-12"; sha256="02v29am4fac3fyq6y1w6r89zwbqqkxjsxrafcwb5s124ikxyl22f"; depends=[]; }; + Cairo = derive2 { name="Cairo"; version="1.5-12.2"; sha256="14hgz5wmnhlbqkd1g662n1agmjnlj3pq69gfng1vb0ivr02l2lnx"; depends=[]; }; CalSim = derive2 { name="CalSim"; version="0.3.2"; sha256="1a4w9kh9ykms1i30hhd7h8gdkbfl6g071jmcy26j1sbshxrnq8s1"; depends=[spatstat]; }; Calculator_LR_FNs = derive2 { name="Calculator.LR.FNs"; version="1.3"; sha256="03qg9rnz623dwnp68xhhsh9788s49n6xp0migg1nnjaqhrahlgdd"; depends=[]; }; CalibratR = derive2 { name="CalibratR"; version="0.1.2"; sha256="1hnmhijckxd35h8mhpzqpglk1ykdih2c5kg17myc7cci5xjk9nfr"; depends=[doParallel fitdistrplus foreach ggplot2 pROC reshape2]; }; - CalibrateSSB = derive2 { name="CalibrateSSB"; version="1.2"; sha256="1r6jpzbxhx5xgvia3m1c2gi2crzk5d3zrbncc3r1dh6wji5z0hm0"; depends=[survey]; }; - CamelUp = derive2 { name="CamelUp"; version="0.1.1"; sha256="09i6bi2vnd7iyll9s8sbyy73l6kq8xrpf07qbcahs595x5iclgrg"; depends=[data_table R6 shiny shinyalert tidyverse]; }; + CalibrateSSB = derive2 { name="CalibrateSSB"; version="1.3.0"; sha256="0qwqvyrpprxc5v0ng6qjp9gmdf0n0iiv46z14d8h303xpi84g42x"; depends=[survey]; }; + CamelUp = derive2 { name="CamelUp"; version="2.0.2"; sha256="102adw46rwhjx2wp34lhjxlgwi858dpmlzpj5wq85cnx5qkx01yx"; depends=[data_table dplyr ggplot2 magrittr Rcpp shiny]; }; Canopy = derive2 { name="Canopy"; version="1.3.0"; sha256="0979hpphzhf4v71jx0shh3l8nffmpsn9l6f8ip2wxzcyx571i1wd"; depends=[ape fields pheatmap scatterplot3d]; }; CarletonStats = derive2 { name="CarletonStats"; version="2.0"; sha256="0pgzvw6gf8kjv8ndprwp4wlgdgh5sb75ga8z5syfw57fb05v7ac3"; depends=[]; }; Carlson = derive2 { name="Carlson"; version="1.0.0"; sha256="1m030x30cd0w2r6y280v9kpqalx6djhyx9hfzhk1qbqh5rk7br2l"; depends=[]; }; @@ -697,19 +716,24 @@ in with self; { CausalGAM = derive2 { name="CausalGAM"; version="0.1-4"; sha256="1riz11hfg96iks7734rg692l75nfrd3hmr9gw563j27rkk1nfkl6"; depends=[gam]; }; CausalImpact = derive2 { name="CausalImpact"; version="1.2.4"; sha256="0nszqvaxmz9jrb7wqdmjjplajk8mxpyyl14n2fm5p4pyx8srwphq"; depends=[assertthat Boom bsts dplyr ggplot2 zoo]; }; CausalKinetiX = derive2 { name="CausalKinetiX"; version="0.2.1"; sha256="0haxw4vvbw48hlvsl1d1y3xm48qm5vl0d3k5lj89ajwc618nk5jg"; depends=[cvTools deSolve fda glmnet pspline quadprog randomForest sundialr]; }; + CausalQueries = derive2 { name="CausalQueries"; version="0.0.3"; sha256="1hnxxyix9zrg5ryzqksv0cl8m3n3n660dbg1msa0pn18dnbjbmj0"; depends=[BH dagitty dplyr gtools randomizr Rcpp RcppEigen rlang rstan rstantools StanHeaders stringr]; }; CautiousLearning = derive2 { name="CautiousLearning"; version="1.0.1"; sha256="1m5x93l4bscrpcxk0pva6d6n2qnzhzxh0a6a81p97l8lqgs1qw2q"; depends=[BH Rcpp sitmo spc]; }; CePa = derive2 { name="CePa"; version="0.7.0"; sha256="0jykh0f168azphjd3h1q81wlvj8zn8qy0c4wi275gvw0xwi104mk"; depends=[graph igraph Rgraphviz]; }; - CeRNASeek = derive2 { name="CeRNASeek"; version="2.1.2"; sha256="1bjx474wbxs4wxy6j4n578cggmcj0061kbbkyhfif65qbsfgrcf8"; depends=[gtools igraph survival]; }; + CeRNASeek = derive2 { name="CeRNASeek"; version="2.1.3"; sha256="0l36bz73xy9miikqdigbnyr0bk83dx6wsaqlsc14b0r64jca4ak6"; depends=[gtools igraph survival]; }; CenBAR = derive2 { name="CenBAR"; version="0.1.0"; sha256="0qa1jzgvf33fi0vns7v49hjk0wkaxic7dw67m0wr33wjplf93wnh"; depends=[cvTools foreach glmnet MASS mvtnorm survival]; }; + CensMFM = derive2 { name="CensMFM"; version="2.11"; sha256="0rq0a9041ipl6pjm15plb1hjz3a3fk27wzj94z91wf1jsmdj3j9z"; depends=[ggplot2 gridExtra MomTrunc mvtnorm tlrmvnmvt]; }; CensRegMod = derive2 { name="CensRegMod"; version="1.0"; sha256="0qqwkxn8knhcjb6mph7mp7mma56zxslbvkfgfajq2lq4gbg901y4"; depends=[]; }; + CensSpatial = derive2 { name="CensSpatial"; version="2.58"; sha256="1jlr6v4qmqvmhcs10iv2nckmlhz3hzmrmj2gsdvfa5n8pgi2mak9"; depends=[geoR lattice moments msm mvtnorm numDeriv optimx psych raster tlrmvnmvt tmvtnorm]; }; Census2016 = derive2 { name="Census2016"; version="0.2.0"; sha256="1c88jmd565v19w8dbvai10f9y5lyfmzsxsjblc3gdykf9kharvcq"; depends=[data_table]; }; CepLDA = derive2 { name="CepLDA"; version="1.0.0"; sha256="15vhk7l5mw2kicw2x60r4z71hc415g8kaf2p06jgf7ykxmzkj7kg"; depends=[astsa class MASS multitaper]; }; CerioliOutlierDetection = derive2 { name="CerioliOutlierDetection"; version="1.1.9"; sha256="0s3pd4y165v69m4wmg9jlc7dl4gz64la9yic67l3n4242wa84p19"; depends=[robustbase]; }; CfEstimateQuantiles = derive2 { name="CfEstimateQuantiles"; version="1.0"; sha256="1qf85pnl81r0ym1mmsrhbshwi4h1iv19a2wjnghbylpjaslgxp6i"; depends=[]; }; ChIPtest = derive2 { name="ChIPtest"; version="1.0"; sha256="1yn5b5s56k2dbhw6damxj18xbaiz180ym7fiq2i3p2gkcgwpddbz"; depends=[]; }; ChainLadder = derive2 { name="ChainLadder"; version="0.2.11"; sha256="0qqfvhgybdp6l74nswc6xcilzbv54291p8mwjvdhjg29782szyyz"; depends=[actuar cplm ggplot2 lattice MASS Matrix statmod systemfit tweedie]; }; + ChangePointTaylor = derive2 { name="ChangePointTaylor"; version="0.1.0"; sha256="0yywsml2sdj8r1m6if8l6cp77hm7scbqj61ph4kqiii7va8isy90"; depends=[bench dplyr ggplot2 magrittr purrr Rcpp rlang tidyr]; }; ChangepointTesting = derive2 { name="ChangepointTesting"; version="1.0"; sha256="1nb78b1jpp0wpy9ah2fxkh53hlmb2f82b68msbfhancb8zp2lclv"; depends=[]; }; - ChannelAttribution = derive2 { name="ChannelAttribution"; version="1.17"; sha256="0p05iy0ip2y9hndrwlny1d78dirfd5h2262xpcv1cr3mrgh93vvp"; depends=[Rcpp RcppArmadillo]; }; + ChannelAttribution = derive2 { name="ChannelAttribution"; version="2.0.2"; sha256="1s8g3mwhmmxyq4rkgsdfpf9n8rfw7mgp2hjjm1n5dajfsj4c11md"; depends=[Rcpp RcppArmadillo]; }; + ChannelAttributionApp = derive2 { name="ChannelAttributionApp"; version="1.3"; sha256="0n9g8wwvc8p5clypl7z23w8fs6d0c47bblijwd4pjwy26bcb4m8h"; depends=[ChannelAttribution data_table ggplot2 shiny]; }; Chaos01 = derive2 { name="Chaos01"; version="1.2.1"; sha256="1wk70l1y0yzbjcjp0r334l1q3hzki0vzn6wbza97mq9pz8wp050r"; depends=[]; }; ChaosGame = derive2 { name="ChaosGame"; version="0.4"; sha256="10bq8i6b6zkg8nzq5np998xabyvijizxfbvw1m2nvfh74vxspj4p"; depends=[colorRamps ggplot2 gridExtra plot3D RColorBrewer rgl sphereplot]; }; ChargeTransport = derive2 { name="ChargeTransport"; version="1.0.2"; sha256="0mq06ckp3yyj5g1z2sla79fiqdk2nlbclm618frhqcgmq93h0vha"; depends=[]; }; @@ -731,7 +755,7 @@ in with self; { Cite = derive2 { name="Cite"; version="0.1.0"; sha256="1gfjirhswh4dkz88z4gl8m8jznqrvcgd4z3mnszyg1k5w3avlf1q"; depends=[miniUI RefManageR rstudioapi shiny]; }; CityPlot = derive2 { name="CityPlot"; version="2.0"; sha256="0lskgxmagqjglvpq39hgbygkf4qp28i2bj6b4m2av1s3pzb4465g"; depends=[]; }; CityWaterBalance = derive2 { name="CityWaterBalance"; version="0.1.0"; sha256="0nvm6bv2cxszjf33xgn1xcvhrgrgbdcar0jahwf7bs03gdlpmgi1"; depends=[dataRetrieval dplyr EcoHydRology geoknife lubridate reshape2 tgp xts zoo]; }; - Ckmeans_1d_dp = derive2 { name="Ckmeans.1d.dp"; version="4.3.2"; sha256="18ypkjhgxdpcannddch9ipvf3xl3pwx6cgf3983p81cr15s0zgrz"; depends=[Rcpp Rdpack]; }; + Ckmeans_1d_dp = derive2 { name="Ckmeans.1d.dp"; version="4.3.3"; sha256="0k08smvgplzcjq1rdbxyalw6iynr129bhdq0wcdn95baqpb5w556"; depends=[Rcpp Rdpack]; }; Claddis = derive2 { name="Claddis"; version="0.3.4"; sha256="161qgj4r8qah3r1m7gx2rwn9ng62y1p6gn62r1gp43pkrp2jlqj9"; depends=[ape clipr gdata phytools strap]; }; ClamR = derive2 { name="ClamR"; version="2.1-1"; sha256="0raz1n79g24a9mc93zj49r20xcmdziw6vvcw5sd3qyjp1ycia13c"; depends=[]; }; ClassComparison = derive2 { name="ClassComparison"; version="3.1.8"; sha256="0fd5s4697pvj295fzvvn5mislf42wfzrcvks17v98388rph586gl"; depends=[Biobase oompaBase]; }; @@ -743,12 +767,12 @@ in with self; { ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; }; ClimDown = derive2 { name="ClimDown"; version="1.0.2"; sha256="0dbv5vn985bi9nqxhq7jcj6k38s8dlbqnln3adgd0ih2fwilvalg"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; }; ClimInd = derive2 { name="ClimInd"; version="0.1-2"; sha256="0brimmkr8ccdbpmcmgbd8ydx4cy0yblfrzcgx151x83wskzq04sj"; depends=[chron SPEI weathermetrics]; }; - ClimMobTools = derive2 { name="ClimMobTools"; version="0.3.2"; sha256="1nsisbqsgwk91by6bx8igf1bn94cbcvnw9dbs7gfb14wnng2422l"; depends=[climatrends httr jsonlite Matrix RSpectra tibble]; }; + ClimMobTools = derive2 { name="ClimMobTools"; version="0.3.5"; sha256="0aljz21j5c4a6wwda40jb5dc43ym3cqqid7vl7v5gvyyp360nkb6"; depends=[climatrends httr jsonlite Matrix PlackettLuce RSpectra]; }; ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.1.0"; sha256="00w7ffcv9axddjvmc0w58c9ncy8z58lf651c5pxsq7492x3vifcm"; depends=[multiApply PCICt plyr]; }; ClinicalTrialSummary = derive2 { name="ClinicalTrialSummary"; version="1.1.1"; sha256="0b5by4sn9yvrvxr9921yqsgp8ma3g1hi2qbp5j9m836db1zjhyla"; depends=[Rcpp]; }; ClinicalUtilityRecal = derive2 { name="ClinicalUtilityRecal"; version="0.1.0"; sha256="17xj9cmdkjrzx7mshka2hlkxh8887sprdqix7fd8jcr9bmc6ad9r"; depends=[caret cowplot ggplot2 lattice nloptr]; }; CliquePercolation = derive2 { name="CliquePercolation"; version="0.2.0"; sha256="1zllhl1674734sr0hmfgwdyqlk4rcjdqqrd7rx30llqri478jdff"; depends=[colorspace igraph magrittr Matrix Polychrome qgraph]; }; - CloneSeeker = derive2 { name="CloneSeeker"; version="1.0.9"; sha256="0xcdknh2fibg86h2ip8jzsv4sbai1yl19ni3g1h5p0zlyigkhs1s"; depends=[combinat gtools quantmod]; }; + CloneSeeker = derive2 { name="CloneSeeker"; version="1.0.10"; sha256="1mpzcbwrrah7kf60l6khdqd4nivm6hpp5xmgg40rahph4wl5ydfp"; depends=[combinat gtools quantmod]; }; CluMP = derive2 { name="CluMP"; version="0.8"; sha256="130aqfxdp1pj5z3hnmy06rp5ywcmr389wn114ja5c2imxxkm3fi3"; depends=[amap data_table dplyr ggplot2 MASS NbClust rlang tableone]; }; ClueR = derive2 { name="ClueR"; version="1.4"; sha256="0awl3ag48idg0396hcgqrh5f16mbgximr5xbxjiimib5zysdc558"; depends=[e1071]; }; ClusBoot = derive2 { name="ClusBoot"; version="1.0"; sha256="1wh9mv932zarl8w098lgv2jpanp6r8nzdkyayv8nxk7nddl0bn1k"; depends=[]; }; @@ -756,29 +780,29 @@ in with self; { ClussCluster = derive2 { name="ClussCluster"; version="0.1.0"; sha256="1436849m2mnm8j7lf653zv8lcvvg2ch8kkks4bvr39kx21wxy8ss"; depends=[ggplot2 reshape2 rlang scales VennDiagram]; }; ClustBlock = derive2 { name="ClustBlock"; version="2.2.0"; sha256="07hcgfap2bjcwy8bynz1hk2cb1amli204k2fsjc30m9p7bhyrqs3"; depends=[FactoMineR]; }; ClustGeo = derive2 { name="ClustGeo"; version="2.0"; sha256="1p5k2w1k7hnacbazzj2yhxh4z2jngnsl4v5a9b3c8z1dr4nhcwxc"; depends=[sp spdep]; }; - ClustImpute = derive2 { name="ClustImpute"; version="0.1.3"; sha256="1rfs8vbpqjskl5ap12x6qmxg4ygaaycaas8x3ylaqvlvyy9ywhki"; depends=[ClusterR copula dplyr magrittr rlang]; }; + ClustImpute = derive2 { name="ClustImpute"; version="0.1.5"; sha256="17wx4w0cw0cvfbibj1dchi6g0ipr4ly6x5d2iy4lz6r9yj185nmw"; depends=[ClusterR copula dplyr magrittr rlang]; }; ClustMMDD = derive2 { name="ClustMMDD"; version="1.0.4"; sha256="0sblf3crpai53dflhyi27yn6mg0xyy9dxhwsk8j57sq5vr50x686"; depends=[Rcpp]; }; ClustOfVar = derive2 { name="ClustOfVar"; version="1.1"; sha256="0grhkab7s58ji4cf7cxh7ahd2dxrj8aqfdf3119b40zxkxbwxcr0"; depends=[PCAmixdata]; }; ClustVarLV = derive2 { name="ClustVarLV"; version="2.0.1"; sha256="1wl4kkhf17fi3vgbv0ph0yii2l93cgisxm3s0g9w8zhyn60dwwb0"; depends=[doParallel foreach iterators plyr Rcpp RcppEigen]; }; Cluster_OBeu = derive2 { name="Cluster.OBeu"; version="1.2.3"; sha256="10i7mnaq968my1c5hi8bdsj05m64wlmrf4n4m118is5h1q7zss8r"; depends=[car cluster clValid data_tree dendextend jsonlite mclust RCurl reshape reshape2 stringr]; }; ClusterBootstrap = derive2 { name="ClusterBootstrap"; version="1.1.0"; sha256="1n2zsl3y4yg1l5kyjfghv6x5hf5520lwz17cvfkvp0m5h6jqfqzg"; depends=[dplyr magrittr]; }; - ClusterR = derive2 { name="ClusterR"; version="1.2.1"; sha256="131k4dsh11xx95rhbr9zx20j9y493hiil6gxbgqks8dqp7n895j7"; depends=[ggplot2 gmp gtools Rcpp RcppArmadillo]; }; + ClusterR = derive2 { name="ClusterR"; version="1.2.2"; sha256="1ky172bk15a78hky77vl60j7c81nq2495sxjrv53is25nkac7sjm"; depends=[ggplot2 gmp gtools Rcpp RcppArmadillo]; }; ClusterRankTest = derive2 { name="ClusterRankTest"; version="1.0"; sha256="01gzalhibqcdx3a6yc2cm1v77rscva73v5m5m0qkrgqdp9c8ph2a"; depends=[]; }; ClusterStability = derive2 { name="ClusterStability"; version="1.0.3"; sha256="1laa5m3y1rc7jr8q3i9qb3izs7qmadz169w9xm8q3mm3834ngn9b"; depends=[cluster clusterCrit copula Rcpp WeightedCluster]; }; ClusteredMutations = derive2 { name="ClusteredMutations"; version="1.0.1"; sha256="1n31nnvpjh1faw751k8m3ga3wfl0yhdpnszwckqhfzlma1jr8z04"; depends=[seriation]; }; Clustering = derive2 { name="Clustering"; version="1.6"; sha256="0r0awijhzv611qf2r2n1xwd369s9719r5hfvw2hipiy0jssfqfbv"; depends=[advclust amap apcluster cluster ClusterR data_table gama ggplot2 glue gmp pracma pvclust sqldf xtable]; }; CoClust = derive2 { name="CoClust"; version="0.3-2"; sha256="04xv807785xv9kdspsspx1302ardv8gda06kd590lgawjixai7dh"; depends=[copula gtools]; }; - CoDiNA = derive2 { name="CoDiNA"; version="1.1.1"; sha256="00kda4grizdgh9xs0vywg9npjj7i97vbdf0hvzl96657rcillwdh"; depends=[data_table igraph magrittr plyr visNetwork]; }; + CoDiNA = derive2 { name="CoDiNA"; version="1.1.2"; sha256="1zjj86z8ica9j0x2nfyq9y6nyp54w07dwskcsg7z6kqibrkfvaq9"; depends=[data_table igraph magrittr plyr reshape2 visNetwork]; }; CoFRA = derive2 { name="CoFRA"; version="0.1002"; sha256="0ldf84dxaanww3qkf64mz5gv3yv2rjp9m6dy64xckds66vw6x0m3"; depends=[gplots stringr]; }; CoImp = derive2 { name="CoImp"; version="1.0"; sha256="06y722flpiqpwq0p7ik86s09mdnvqw3hdybhdzn8vfns5swc8x1y"; depends=[copula gtools locfit nnet]; }; CoRpower = derive2 { name="CoRpower"; version="1.0.3"; sha256="007v6khv2kkf398cqy3vjv0ncd7zc8ad084a5qhpplsnj1f3ll2j"; depends=[osDesign survival]; }; - CoSMoS = derive2 { name="CoSMoS"; version="1.1.3"; sha256="0wzs1w8kbphrw8hmi0zan02yg1jgivdj7r15iqq7n6cd1l4jfc86"; depends=[data_table ggplot2 nloptr]; }; + CoSMoS = derive2 { name="CoSMoS"; version="2.0.0"; sha256="1qnpfipf24szzrmkla7v5dn8g6mrg5x5lqsc6418mm1p795ym3ry"; depends=[animation cowplot data_table directlabels ggplot2 mAr Matrix matrixcalc MBA mvtnorm nloptr plotly pracma]; }; CodataGS = derive2 { name="CodataGS"; version="1.43"; sha256="1bjn6s1f5jn64gwrvjz5kvwfkbqrqhavib6dj9k37rb5nzqkwhp6"; depends=[Matrix]; }; CodeDepends = derive2 { name="CodeDepends"; version="0.6.5"; sha256="0l7kiv3awx50glf5cs841b4zzsff1ml90f0zr868ygvwsr4ps1hq"; depends=[codetools graph XML]; }; CoinMinD = derive2 { name="CoinMinD"; version="1.1"; sha256="0invnbj5589wbs0k2w5aq9qak7axc3s0g9nw85c48lnl0v95s91i"; depends=[MCMCpack]; }; Coinprofile = derive2 { name="Coinprofile"; version="0.1.9"; sha256="1bcip62gm34cx5m8a1mx9px2rhgvdmsgnn6q9q40k8p5hw4cx9g0"; depends=[coin exactRankTests ggplot2 plyr Rdpack zoo]; }; CollapsABEL = derive2 { name="CollapsABEL"; version="0.10.11"; sha256="0libm1wv34av3vm2vvbqcnxjh4y1rwfi8qzjca8qdz9490vngags"; depends=[biganalytics bigmemory collUtils dplyr ggplot2 haplo_stats R_utils rJava RSQLite stringr]; }; - CollapseLevels = derive2 { name="CollapseLevels"; version="0.2.0"; sha256="1fn5k83lh0vw5j9vhq0x6ksbkrm25acpslav85wfyknsj9vzmzid"; depends=[dplyr ggplot2 lazyeval magrittr]; }; + CollapseLevels = derive2 { name="CollapseLevels"; version="0.3.0"; sha256="1d2grxh95893j260igh4yh2z3rm3zymlpadqyp6w3na91birazb4"; depends=[dplyr ggplot2 lazyeval magrittr]; }; CollocInfer = derive2 { name="CollocInfer"; version="1.0.4"; sha256="1iwf5g2y7i0j8dc19hdhya4m6g47jj968glnclj7a2yaq2yx37cj"; depends=[deSolve fda MASS Matrix spam]; }; ColorPalette = derive2 { name="ColorPalette"; version="1.0-1"; sha256="1dsj5njikx3qm2lnamqqg4qgwwyr11fwx9s5sdi7dkfx3nmf6dac"; depends=[]; }; ComICS = derive2 { name="ComICS"; version="1.0.4"; sha256="0brsb7y1bg23sdpxs4j1y3xdgr1q7iinxnnp17rravw72l991xqa"; depends=[glmnet]; }; @@ -790,7 +814,6 @@ in with self; { CommT = derive2 { name="CommT"; version="0.1.1"; sha256="1kimm8z3k7p5lxsjnkb203js2rqn09grywxs890fab1hhgssgv2r"; depends=[ape ggplot2 gridExtra phangorn reshape]; }; CommonJavaJars = derive2 { name="CommonJavaJars"; version="1.0-6"; sha256="0l1zqygklv1s3xr6pjjrji3wmyqg7258qvgwf9c2qjim8p8y8lsr"; depends=[]; }; CommonMean_Copula = derive2 { name="CommonMean.Copula"; version="1.0.0"; sha256="0j489hb4vlj3xkdq9vf2qjmcfb8ccff82vsmz63f25ws9pgc2lk2"; depends=[mvtnorm pracma]; }; - CommonTrend = derive2 { name="CommonTrend"; version="0.7-1"; sha256="088pg2hy2g2jgs84xawrnsf7gpvrpqjsimkx7g0i5r5fmkx169f9"; depends=[MASS urca]; }; CommunityCorrelogram = derive2 { name="CommunityCorrelogram"; version="1.0"; sha256="1wkrm5lil595sc4ih3qsf4sgvfipzlav0n7339ixqw9zxm2pg4nj"; depends=[vegan]; }; Comp2ROC = derive2 { name="Comp2ROC"; version="1.1.4"; sha256="06hpbid9z1pzg7k4gqp2zn8l7sm375z32fsn54i27qbl3inp7m2d"; depends=[boot ROCR]; }; CompDist = derive2 { name="CompDist"; version="1.0"; sha256="02c18ksk6clv674yh79bzg3mh9hymzhal51j6g0rnvqd5ra8g66c"; depends=[actuar fExtremes numDeriv PearsonDS rmutil VGAM]; }; @@ -798,15 +821,17 @@ in with self; { CompQuadForm = derive2 { name="CompQuadForm"; version="1.4.3"; sha256="1i30hrqdk64q17vsn918c3q79brchgx2wzh1gbsgbn0dh1ncabq4"; depends=[]; }; CompR = derive2 { name="CompR"; version="1.0"; sha256="1k4q0yanvhdh3ksia7d42lxky19yci5vxhmi6h716g9sxzfsjk6b"; depends=[MASS]; }; CompRandFld = derive2 { name="CompRandFld"; version="1.0.3-6"; sha256="1yr1d97l6yc07jwh30j26gda15pjfcwx2z3w55dh3nr15vds0qcp"; depends=[fields mapproj maps RandomFields scatterplot3d spam]; }; + Compack = derive2 { name="Compack"; version="0.1.0"; sha256="1bl1drbkak7r7scfiij6sf8fjzq01y3p05mjlkknhi9k1l6jq0mi"; depends=[fda MASS orthogonalsplinebasis plyr Rcpp RcppArmadillo]; }; CompareCausalNetworks = derive2 { name="CompareCausalNetworks"; version="0.2.6.2"; sha256="0r8gdr834jqqwiq9h4yz19gcg92rbdd4fr3fwi083vfjml82f0v0"; depends=[data_table expm Matrix]; }; CompareTests = derive2 { name="CompareTests"; version="1.2"; sha256="1z96kh851bpr2szgyjszkpv6m5ma6abz7hrm50fgvfpgxkj7f4yi"; depends=[]; }; - ComparisonSurv = derive2 { name="ComparisonSurv"; version="1.0.8"; sha256="1l6c6fwzrmj4sl37rcxhlglwvm1ln4rb138apj1jawnyg2i5si1x"; depends=[muhaz survival survRM2 TSHRC]; }; + ComparisonCR = derive2 { name="ComparisonCR"; version="1.0.4"; sha256="10xw3ppkzpc3njc409ln7g6bg33csf2ilw3f11hn60ry5xbnn82y"; depends=[boot CIFsmry cmprsk]; }; + ComparisonSurv = derive2 { name="ComparisonSurv"; version="1.0.9"; sha256="1xvxkj0i59fq05df6szx4k32w2447mxcx3877l2myag4x6i6c74l"; depends=[muhaz survival survRM2 TSHRC]; }; Compind = derive2 { name="Compind"; version="2.1"; sha256="1cjvpgankifiql67imhxx382q2lz1jq9k0nrwzq560h0xizkak6i"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff np psych smaa spdep]; }; - Compositional = derive2 { name="Compositional"; version="3.8"; sha256="103kz32kfzniqbamy1gh7mc9v7q1pjrr03zw1dabzaxfpf9ps4df"; depends=[doParallel emplik foreach MASS mda mixture RANN Rfast Rfast2 sn]; }; + Compositional = derive2 { name="Compositional"; version="3.9"; sha256="0ma5law5dx87x9sjdbffgck80cxxbyhq20jld2ic4hdsm41h934z"; depends=[doParallel emplik FlexDir foreach MASS mda mixture RANN Rfast Rfast2 sn]; }; CompoundEvents = derive2 { name="CompoundEvents"; version="0.1.0"; sha256="03shw3016xc41a6by8pnpqs7mmnhs0qmg5aqd4hlfcy3dv2w9wkf"; depends=[]; }; Compounding = derive2 { name="Compounding"; version="1.0.2"; sha256="1xlb3ylwjv70850agir0mx79kcvs43h0n1sm22zcny3509s2r7lf"; depends=[hypergeo]; }; ConConPiWiFun = derive2 { name="ConConPiWiFun"; version="0.4.6"; sha256="1kkc4xp5b6q54b76wk4ga28wl668psbpyivl6bnh3xm21276yx5k"; depends=[Rcpp]; }; - ConR = derive2 { name="ConR"; version="1.2.4"; sha256="1d36j1q364pakcm8xrbw323pg6dg9brsf6x3hcj1kahcqls9dcff"; depends=[doParallel fields foreach geosphere maptools raster rgdal rgeos sp spatstat spatstat_utils tibble writexl]; }; + ConR = derive2 { name="ConR"; version="1.3.0"; sha256="1q93x2b7a2jgkybazk24x8gvwvjjvkhi1gy5zx1sc2f4arm73myq"; depends=[doSNOW fields foreach geosphere raster rgdal rgeos rnaturalearth sf snow sp tibble writexl]; }; ConSpline = derive2 { name="ConSpline"; version="1.2"; sha256="16r0v0llj0pri69jqxribp8dpzh6yn6acpq20aaky14fyh3i4q7x"; depends=[coneproj]; }; Conake = derive2 { name="Conake"; version="1.0"; sha256="1rj1rv8r53516jqhwp9xqqwjxh4gx1w47c0bw59f87wiy5pbchpf"; depends=[]; }; CondIndTests = derive2 { name="CondIndTests"; version="0.1.5"; sha256="0km4z8wnj5msg1pmphk2fccbw1cidsxv174817lwcyii9nf5iwsm"; depends=[caTools kernlab lawstat MASS mgcv mize pracma quantregForest randomForest RPtests]; }; @@ -820,15 +845,15 @@ in with self; { ConnMatTools = derive2 { name="ConnMatTools"; version="0.3.5"; sha256="082y4xxnp42xa7db5hnbc9qlvkb50wwb3wzi0my04l55a9s0ril7"; depends=[]; }; ConsRank = derive2 { name="ConsRank"; version="2.1.0"; sha256="0hp6zx3y8vwnpska7bnxpmkpgjlgfw6d7jpc0f7p77j0lqlj0xyc"; depends=[gtools proxy rgl rlist]; }; ConsReg = derive2 { name="ConsReg"; version="0.1.0"; sha256="0ck188ahzprzvqdh2q05bcg9b68dw3xiqqb1xirbm4rp5chyr419"; depends=[adaptMCMC data_table DEoptim dfoptim FME forecast GA GenSA ggplot2 MCMCpack Metrics nloptr Rcpp rlang Rsolnp]; }; - ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.3.4"; sha256="148zpk5a091kxrn6f73k6piwfwbqdmiyd48qinn6cbfma012n13w"; depends=[caret mclust mixture mnormt mvtnorm]; }; + ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.3.4.1"; sha256="157lnlv0idcasi8y31zk9864kdqrlcl409gza4jx5k131qlp2san"; depends=[caret mclust mixture mnormt mvtnorm]; }; ContourFunctions = derive2 { name="ContourFunctions"; version="0.1.1"; sha256="00p5bdiq8hj95lkr86iwyh50qw0d0d4gs9hhbzcix6lwn8dwqd3s"; depends=[]; }; ConvergenceClubs = derive2 { name="ConvergenceClubs"; version="2.2.1"; sha256="0mn0lnycz5pi821q52g1njjs2pcmvv8yynr13bh237c8cashk2n3"; depends=[lmtest sandwich]; }; ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.2.2"; sha256="1pvcl0bgd4anrbn6wqxsd1s23ycsc7jhrk94yzwx67xx0qs9mmrw"; depends=[lattice tkrplot]; }; CoopGame = derive2 { name="CoopGame"; version="0.2.1"; sha256="1c11b5l6r5csa6zw5a6lfqaygzhnp5jfdf0vkrxpl7fb4bbxhm31"; depends=[geometry gtools rcdd rgl]; }; - CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="2.0-11"; sha256="0z1ksim2chwg5acbvav0dzsrnzch1qmbvr2k0dhjmn8lr9rdk4m5"; depends=[dplyr geosphere ggplot2 raster rgbif rgdal rgeos rnaturalearth sp tidyselect]; }; + CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="2.0-15"; sha256="0hvvfdcdmdi72yd2rsgza8d7ngp6w913rggbvvcj4vh9wvqpk1r3"; depends=[dplyr geosphere ggplot2 raster rgbif rgdal rgeos rnaturalearth sp tidyselect]; }; CopCTS = derive2 { name="CopCTS"; version="1.0.0"; sha256="1j0bhkjk181y9k69442diswgwax5whmh5vfqydhf3b1r5ll1wkm3"; depends=[copBasic copula msm]; }; Copula_Markov = derive2 { name="Copula.Markov"; version="2.8"; sha256="0wyb80jj9zgh7kn0nah7dljps72083c92hpds94dw4ccmw6cfwf6"; depends=[]; }; - Copula_Markov_survival = derive2 { name="Copula.Markov.survival"; version="0.1.0"; sha256="1r9m96r0mqqjlawhlb9d8d1hf2k2bkal2fmw6g0zabdjb19c75y7"; depends=[survival]; }; + Copula_Markov_survival = derive2 { name="Copula.Markov.survival"; version="1.0.0"; sha256="1sxg0ir39f4hj4m6imija0c88j513j6fflcp7xc0599iglwsrbvs"; depends=[survival]; }; Copula_surv = derive2 { name="Copula.surv"; version="1.0"; sha256="1cq12vmsvrxd6anpv6b5jig7x1lf6pj589353h2ba9k0fhkpk51y"; depends=[]; }; CopulaCenR = derive2 { name="CopulaCenR"; version="1.1.2"; sha256="1ksxqgb91vww5q4njidchxwia64g5229dvpxhqhfp8w6hvmib1k1"; depends=[caret copula corpcor flexsurv icenReg magrittr plotly pracma survival]; }; CopulaDTA = derive2 { name="CopulaDTA"; version="1.0.0"; sha256="1bx0jvlbhaxf4yhrfpd5l5zp7kmp6f17ckb1y9974sgc7s3hpqcd"; depends=[ggplot2 plyr reshape2 rstan]; }; @@ -836,9 +861,8 @@ in with self; { CopyDetect = derive2 { name="CopyDetect"; version="1.3"; sha256="1g3bwd805h62x93xvvn67acf9v6vn7s7ghxpvjhwcfdfj7fwzh6l"; depends=[mirt]; }; CorBin = derive2 { name="CorBin"; version="0.3.3"; sha256="0jf3d0mbr0vmcqmk5p4rcvc3nc4dn6cqcj8fcqyf32y9vwxd2wii"; depends=[]; }; CorDiff = derive2 { name="CorDiff"; version="1.0"; sha256="12rgfhygrdq1ign4ybr8g171wxic8zbp83n1xdsnqpj910k5jdr5"; depends=[mcc]; }; - CorReg = derive2 { name="CorReg"; version="1.2.17"; sha256="06r8a7swvbafkl7ynvhhwbvm8jgqi54q70fk5jv19plff2j4gxmf"; depends=[corrplot elasticnet glmnet lars MASS Matrix mclust mvtnorm Rcpp RcppEigen rpart]; }; - Corbi = derive2 { name="Corbi"; version="0.5-0"; sha256="05jr0y0qjv2l5ikx8cj10nl16z5yvcjbzdz5gk7lp6kpnmgq3sbw"; depends=[Matrix]; }; - CornerstoneR = derive2 { name="CornerstoneR"; version="1.1.1"; sha256="017j7s3m97sxahgnvk9sm7rfx81cjp1xzsmw7b1aqi7301zjrqa7"; depends=[checkmate data_table ranger vcd]; }; + Corbi = derive2 { name="Corbi"; version="0.6-0"; sha256="17jk4kidlvrwhyjgm3hs22pzs7170r7smihmf7v0pnhvn57ak12c"; depends=[Matrix]; }; + CornerstoneR = derive2 { name="CornerstoneR"; version="2.0.1"; sha256="1vy1zcz4vjpv52icz50gfn5276n1wpjwmzhh90i9ippii7q76vim"; depends=[checkmate data_table minpack_lm ranger SpatialTools vcd]; }; CorporaCoCo = derive2 { name="CorporaCoCo"; version="1.1-0"; sha256="1s3wlcy6mnw9riivw5lc4gd6bjbsd77m15ipr95g46isdcrli8zb"; depends=[data_table RColorBrewer rlist]; }; CorrBin = derive2 { name="CorrBin"; version="1.6"; sha256="0iwad5qf7hqii02s5f85155c5s7v8ghnac4l6l3c45dshrpapp2m"; depends=[boot combinat dirmult geepack mvtnorm]; }; CorrMixed = derive2 { name="CorrMixed"; version="1.0"; sha256="0rj987k8pzsw9n9a20ky23rwc3zyqsl0fcibpmry7p8pw2miaj0z"; depends=[nlme psych]; }; @@ -864,17 +888,18 @@ in with self; { CreditMetrics = derive2 { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; }; CreditRisk = derive2 { name="CreditRisk"; version="0.1.3"; sha256="09ks8xlsrbp3an1drcwmmd6df4fsfz61z21ma2p62a1pk0bnc86c"; depends=[fOptions]; }; CropDetectR = derive2 { name="CropDetectR"; version="0.0.1"; sha256="14sabqld94if7f2m39bh6652cb62hcwx53k8q5k23anzzsn93qlj"; depends=[dplyr EBImage imager reshape2]; }; - CrossClustering = derive2 { name="CrossClustering"; version="4.0.3"; sha256="05lbdmblwmmv24h46ixxabbrp7mpajyv7raw1p5h0dmsbfbq9hi5"; depends=[assertive cli cluster crayon dplyr flip glue magrittr mclust purrr]; }; + CropScapeR = derive2 { name="CropScapeR"; version="1.1.1"; sha256="103mnnppa30hxzy3pkaq66n7p5qfnv8g8dh34gqx0n80q2xpck2b"; depends=[data_table dplyr httr magrittr raster RJSONIO sf]; }; CrossScreening = derive2 { name="CrossScreening"; version="0.1.1"; sha256="1gig80r8p611ysn35ajx7xdjj5wnkcf1vspcf0i06dmh75xpm3w9"; depends=[plyr tables]; }; CrossVA = derive2 { name="CrossVA"; version="0.10.0"; sha256="08mq8d6la5gz3yv5a3lc70dxdgf29q1vngi8lrgdy58p9415pxjv"; depends=[stringi]; }; CrossValidate = derive2 { name="CrossValidate"; version="2.3.4"; sha256="1q5wnw2llvlw3hbjg0zccipk3ns31m2339x1aj6m526zhvgl2wvx"; depends=[Modeler oompaBase]; }; CryptRndTest = derive2 { name="CryptRndTest"; version="1.2.2"; sha256="1cg0agwqp1f7pgxdf9wilwparklyfsv900r47fpihnqw3ycvbdai"; depends=[gmp kSamples LambertW MissMech Rmpfr sfsmisc tseries]; }; CrypticIBDcheck = derive2 { name="CrypticIBDcheck"; version="0.3-3"; sha256="1c7n020i9lxp0fam05k9v4az4rvx8fakhzi9fkma82smpl709x8q"; depends=[car chopsticks ellipse rJPSGCS]; }; - CsChange = derive2 { name="CsChange"; version="0.1.5"; sha256="1xsbysjcqlky8lsgk2rbaby49zgipp3wzj5navm7kcnk04sg90f6"; depends=[boot Hmisc rms survival]; }; + CsChange = derive2 { name="CsChange"; version="0.1.6"; sha256="0ahgzir1rz5hh2jkgabp9vccg527vbvmkdyxf9lyz5yxkig3jv2s"; depends=[boot Hmisc rms survival]; }; Cubist = derive2 { name="Cubist"; version="0.2.3"; sha256="1x71n72n12alyl7d9vdf3xb3ks14lql4pxxxnimk2gq7brc5z10r"; depends=[lattice reshape2]; }; CustomerScoringMetrics = derive2 { name="CustomerScoringMetrics"; version="1.0.0"; sha256="166v0hbxy4xgbfqh7sx6zsrv4pghqpimx5xry3h2qwynnvr4ng1a"; depends=[]; }; + CustosAscensor = derive2 { name="CustosAscensor"; version="0.1.0"; sha256="1axyhwf9rc9dvrrcrpmx69kp49nwb0an7csn9qbjmx9jwwav11l5"; depends=[]; }; CutpointsOEHR = derive2 { name="CutpointsOEHR"; version="0.1.2"; sha256="0r772zb7g10akcfnf2hnyvpvba4px9pgslyns7drmijdsh0ncnvj"; depends=[survival]; }; - Cyclops = derive2 { name="Cyclops"; version="2.0.3"; sha256="1gbr9v2qs542c128zmx8nwvccfc1d5gnmhaiy2pb6hj0cqy5fjzb"; depends=[BH bit ff ffbase MASS Matrix Rcpp RcppEigen survival]; }; + Cyclops = derive2 { name="Cyclops"; version="3.0.0"; sha256="0g10pkas9zd87nk47imxywgxdh5kx2kyj4kmmkzi2dba95f8pwil"; depends=[Andromeda BH dbplyr dplyr Matrix Rcpp RcppEigen rlang survival]; }; CytobankAPI = derive2 { name="CytobankAPI"; version="1.3.0"; sha256="1rrqhsqv5xc58dvkrbs9c83pkqz5np59shm7xjmqxdjj2rxj8zqn"; depends=[curl httr jsonlite]; }; CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="2.0"; sha256="0xczcgaxd8dv6fd1j5c8y4il852lq8859d1y16sxs8a3gqn9fbz2"; depends=[CytobankAPI pheatmap shiny shinyFiles xlsx]; }; CytobankBridgeR = derive2 { name="CytobankBridgeR"; version="1.0.0"; sha256="0m8gxbm3p9gvdszymqx10n5rzb406r4f70a0in798c56mp2rcsl4"; depends=[CytobankAPI]; }; @@ -885,44 +910,43 @@ in with self; { DAC = derive2 { name="DAC"; version="0.1.1"; sha256="0abnl70k4c98n29qi64sfd5nch10abw9fknhf2aksyi0qadsiyjq"; depends=[blavaan flexmix sfsmisc truncnorm]; }; DACF = derive2 { name="DACF"; version="1.0.0"; sha256="0hv7c9lk6ivj4iz953yn11iy5p611q4si4ghn9d5a9i229s5hig8"; depends=[]; }; DAIME = derive2 { name="DAIME"; version="2.1.3"; sha256="099pbzgryz9lxhcqlrywcv8zl5af4ir5dyyqvgc16xi5bddxk7ld"; depends=[]; }; - DAISIE = derive2 { name="DAISIE"; version="1.4"; sha256="16653wwz20lhf3bpzflpj5d1h7j3cqyfaqk5gn24aifga2jc0wbb"; depends=[DDD deSolve Matrix subplex tensor]; }; + DAISIE = derive2 { name="DAISIE"; version="3.0.0"; sha256="1114h6qsydjy1gz3inpmjy4kx9skkkr0n1x3y3nz1igwwr44jp1n"; depends=[DDD deSolve doParallel foreach magrittr Matrix pracma subplex tensor testit]; }; DAKS = derive2 { name="DAKS"; version="2.1-3"; sha256="0vmpwxvksnmyq40faimbgpj0y3zbk519986n38ipwdfzllcg0zs4"; depends=[relations sets]; }; - DALEX = derive2 { name="DALEX"; version="1.2.0"; sha256="0mfcci54622gnk8al9fl2jhs9i2vfly7lam04y5rdacbyiam49j6"; depends=[ggplot2 iBreakDown ingredients]; }; - DALEXtra = derive2 { name="DALEXtra"; version="0.2.1"; sha256="0r1vdjphmfwa95fpd3fx2hqfb23gb4i920j8l8xxraadr9hdac32"; depends=[DALEX ggdendro ggplot2 glmnet gridExtra reticulate]; }; + DALEX = derive2 { name="DALEX"; version="1.3.1.1"; sha256="0akw1yzhb3shpg6yb89vralqd2z80z5yk9azqaa55dx56as52kjs"; depends=[ggplot2 iBreakDown ingredients]; }; + DALEXtra = derive2 { name="DALEXtra"; version="1.3.2"; sha256="1acasrhg7apdqd3p2vkkssdpirbg4alsv4lv60ngqvb3ccd8hy31"; depends=[DALEX ggdendro ggplot2 glmnet gridExtra reticulate]; }; DALY = derive2 { name="DALY"; version="1.5.0"; sha256="1v7ld01xcn5jiygl1c3xhd5h71ip90lks87fs9gmpnivp8jz5cr5"; depends=[]; }; - DAMOCLES = derive2 { name="DAMOCLES"; version="2.2"; sha256="1rmm36k5w6y8pkb1vzkxnizx3my94kgai8h3x83cxr6mlbgn9lb8"; depends=[ape caper DAISIE DDD deSolve expm Hmisc Matrix matrixStats picante]; }; + DAMOCLES = derive2 { name="DAMOCLES"; version="2.3"; sha256="0pk9gq82qa18fl7zp74d47bgy8lhj9rkvfq23w8844nz9kn58s1f"; depends=[ape caper DDD deSolve expm Hmisc Matrix matrixStats picante]; }; DAMisc = derive2 { name="DAMisc"; version="1.5.4"; sha256="1xs9jibpxg6py9ry4mad2yj4x99jnv19df0d6f9yc760wipb5ymk"; depends=[AICcmodavg boot car clarkeTest coda effects fANCOVA gdata ggplot2 glue lattice latticeExtra MASS nnet optiscale rstan xtable]; }; DAP = derive2 { name="DAP"; version="1.0"; sha256="0zzb05yxfaqp6qnr979q20rqy8sl5l825mxs0x9366qr7mz5k5ws"; depends=[MASS]; }; DBEST = derive2 { name="DBEST"; version="1.8"; sha256="1a598g02hpfgv572gchllqkppynnsp4lx764jg0g66w3b66k0kdy"; depends=[zoo]; }; DBGSA = derive2 { name="DBGSA"; version="1.2"; sha256="04zqh9y3nqcdzs5jn8aaq5idy9zl450ikvl788xs860wlg692qv2"; depends=[fdrtool]; }; DBI = derive2 { name="DBI"; version="1.1.0"; sha256="1r03j9rdcxb9bhxk40dkmy10ikz4yzsxhy3f9k9ix3x577xbfvd9"; depends=[]; }; DBItest = derive2 { name="DBItest"; version="1.7.0"; sha256="10fvij1bz3pvqqrg0s55x7bfgxh7nrnnjaxp8cwpk3wkp3c77pi5"; depends=[blob callr DBI desc hms lubridate R6 rlang testthat withr]; }; - DBKGrad = derive2 { name="DBKGrad"; version="1.7"; sha256="0q11kza0c1caph01f247h7qm4shqycq0g9i152739xzspprjf4i1"; depends=[lattice minpack_lm SDD TSA]; }; DBfit = derive2 { name="DBfit"; version="1.0"; sha256="19jdf693ygwfchlqvh0kywid14v0b53p33rr2dvmaqmsc6pfxbbf"; depends=[Rfit]; }; DCA = derive2 { name="DCA"; version="2.0"; sha256="1acy33vyf814kr0aj6kdvi9f1qzgynwwzv57ll01gd0iqq36374f"; depends=[coin elasticnet GPArotation locfdr modeest mvtnorm PMA]; }; DCCA = derive2 { name="DCCA"; version="0.1.1"; sha256="06xdx79r7dr14dlk5vgcyd8ar4sc72imlyk66bnia1kvlynvdy69"; depends=[checkmate]; }; DCD = derive2 { name="DCD"; version="0.1.0"; sha256="0p6vk8fdvpcvb1bb5fwy3h1v8y3djlvcm5jl5lnx30ngqj6d7rcj"; depends=[data_table doParallel foreach ggplot2 igraph lattice lsa Matrix plyr qlcMatrix Rdpack ROCR WGCNA]; }; - DCEM = derive2 { name="DCEM"; version="2.0.2"; sha256="0wzbjy70h9agfpmpc5v3y8cdj4d7w2kqq1vmhfsz7vhpxpd1ygd0"; depends=[MASS matrixcalc mvtnorm Rcpp]; }; + DCEM = derive2 { name="DCEM"; version="2.0.4"; sha256="1g4c7h02rv467sgvjv19s0w4xcm11mwfamfs3sdy44ra9dgaf1af"; depends=[MASS matrixcalc mvtnorm Rcpp]; }; DCG = derive2 { name="DCG"; version="0.9.3"; sha256="08718x6v3g7kpfv0gpgm19cn3d3ynj7yagzs0jic1j5rwvn04pfb"; depends=[]; }; DCGL = derive2 { name="DCGL"; version="2.1.2"; sha256="1dhkdvdglpsr0fzrfrrr6q76jhwxgrcjsiqn56s082y7v366xvs4"; depends=[igraph limma]; }; DCL = derive2 { name="DCL"; version="0.1.0"; sha256="1ls3x3v0wmddfy7ii7509cglb28l1ix1zaicdc6mhwin0rpp2rx3"; depends=[lattice latticeExtra]; }; - DCM = derive2 { name="DCM"; version="0.1.1"; sha256="191gwfv30hdr789jmdrimcc7aqisz635anydsw2v4s28a3zjbipw"; depends=[gWidgets pander readxl]; }; DCODE = derive2 { name="DCODE"; version="1.0"; sha256="19dwms88q0ylxd92l3ivig8p8jjyhk8mhgz0l36m9pcq11gyjc0n"; depends=[seqinr]; }; - DCPO = derive2 { name="DCPO"; version="0.5.1"; sha256="0kkp59qmr4lpggb3fzp28dxc3vdv32dyy6myv92rrf4s3lyzdxab"; depends=[beepr BH dplyr forcats janitor purrr Rcpp RcppEigen rstan rstantools StanHeaders tibble tidyr]; }; + DCPO = derive2 { name="DCPO"; version="0.5.3"; sha256="1h14xnii6kv6sc7pfxalif3bj0mifnxg46x4lwbixx9vzxxz96sq"; depends=[beepr BH dplyr forcats janitor purrr Rcpp RcppEigen rstan rstantools StanHeaders tibble tidyr]; }; DCchoice = derive2 { name="DCchoice"; version="0.0.16"; sha256="0wwhdpljg1k70kydhh89lk6c461a9vjw6p2ijzhvgkv2pl5rxaag"; depends=[Formula interval MASS]; }; - DChaos = derive2 { name="DChaos"; version="0.1-3"; sha256="12qi8m2rvd5r8clmi44hiwpnr6zf1sjw35wvbvm4nz3431xwf4ng"; depends=[entropy NeuralNetTools nnet outliers pracma sandwich xts zoo]; }; + DChaos = derive2 { name="DChaos"; version="0.1-5"; sha256="0dzwyqncv5cb8qr0bwpy91ijbz8yamlhnhxwpc4wpiffzhf2d4hq"; depends=[nnet outliers pracma sandwich xts zoo]; }; DCluster = derive2 { name="DCluster"; version="0.2-7"; sha256="008nyry64s5g80narcc58273v0jhqzfgwynka6mh7jgi7qsqnxjd"; depends=[boot MASS spdep]; }; DClusterm = derive2 { name="DClusterm"; version="1.0-1"; sha256="04i9fyph2k3ffds0nv49371p8lw6dkzcf27pc98f99x0l6c8k5iq"; depends=[DCluster lme4 sp spacetime xts]; }; - DDD = derive2 { name="DDD"; version="4.3"; sha256="001zal1nqayglnwf8hgi1sm8m5gn5jzi9d3q3ckxdcnn36xkla7h"; depends=[ape deSolve expm Matrix phytools SparseM subplex]; }; + DDD = derive2 { name="DDD"; version="4.4"; sha256="133qkwl9f9rsqmcmdmsr4i88568w8bvla9naw7vhj794i1r5vqka"; depends=[ape deSolve expm Matrix phytools SparseM subplex]; }; DDHFm = derive2 { name="DDHFm"; version="1.1.2"; sha256="0lgh6kcfas06p2yy7zy21r05k5521xbj5af3wwwssp5li1cia35g"; depends=[lokern wavethresh]; }; DDIwR = derive2 { name="DDIwR"; version="0.4"; sha256="0z994anrw746iy83503bah2n39rd7qvx4spxn4qwhxhxbjp4gkfw"; depends=[admisc haven readr tibble xml2]; }; DDM = derive2 { name="DDM"; version="1.0-0"; sha256="19g06qk3lzasj294x9wfij729mlq6ryvjqkn3rgl5xp1w0gx9wi2"; depends=[]; }; DDPGPSurv = derive2 { name="DDPGPSurv"; version="1.0"; sha256="1d271yv621jmwd4dmdnhpwrk95gbpw7g6r2v05lc3d6wzlzpd78c"; depends=[MASS mc2d mvnfast Rcpp RcppArmadillo survival]; }; + DDPNA = derive2 { name="DDPNA"; version="0.2.6"; sha256="0ygyyxhhggyrllgzgmyxk4g1syz9qkp2rsawjgb8cz6w8nr06saq"; depends=[ggalt ggplot2 Hmisc igraph MEGENA plyr scales VennDiagram]; }; DDRTree = derive2 { name="DDRTree"; version="0.1.5"; sha256="16s5fjw7kwlxhrkzdny62sx32fvmg3rxjc3wrh6krd31jh1fqlfk"; depends=[BH irlba Rcpp RcppEigen]; }; DDoutlier = derive2 { name="DDoutlier"; version="0.1.0"; sha256="1az5zq0l3kj959572mlpc4zl73f16iag0yrs217fa9m8xpd3c2sd"; depends=[dbscan pracma proxy]; }; DECIDE = derive2 { name="DECIDE"; version="1.2"; sha256="18kn2pm9r0ims2k1jfsfzh258wwxz0xg86rsbwgq6szh0azlq3qy"; depends=[]; }; DEEPR = derive2 { name="DEEPR"; version="0.1"; sha256="0q8970q3gpjxwxdf2bkhpnqrxpm00w27b20a9sn9vv314rn1n7s8"; depends=[dirmult]; }; - DEEVD = derive2 { name="DEEVD"; version="0.1.0"; sha256="037h40mi4ka5w6m6bhry5mk7rcchss07vn08pzcyikcllnnn2vaf"; depends=[evd]; }; + DEEVD = derive2 { name="DEEVD"; version="1.2.1"; sha256="0r8ymkwqjxjh49bh463f6wgdx22m420y0lkbgdwkbnzfgp5jmaar"; depends=[evd]; }; DELTD = derive2 { name="DELTD"; version="2.6.5"; sha256="069njvzrffq64f0y05mm8pn58l9xsxacy12slj1w6np5nbvsp7b2"; depends=[]; }; DEMOVA = derive2 { name="DEMOVA"; version="1.0"; sha256="09dqhhhihphhdnplmhdq4q5zwc0qvqhirdrxa9x6fr43vwa5zfp4"; depends=[leaps]; }; DES = derive2 { name="DES"; version="1.0.0"; sha256="16p38i8ykwc8gjw6c9dhdwjjpa1b17n9wqhz3rhkbzjh978pky31"; depends=[]; }; @@ -931,37 +955,39 @@ in with self; { DEoptim = derive2 { name="DEoptim"; version="2.2-5"; sha256="0nlm2gdvd33yrwambmlrgj76inxz2a65ya7727l98fd4skfdw4mf"; depends=[]; }; DEoptimR = derive2 { name="DEoptimR"; version="1.0-8"; sha256="1vz546hyjyhly70z62h5n3mn62b8llhhmim8ffp9y6jnnb0i2sc4"; depends=[]; }; DEploid = derive2 { name="DEploid"; version="0.5.3"; sha256="0k5bcpfwf9fhkv0wp6s1nvp4l6xgwmdbz3l8mmiy8q1ym7gpvwml"; depends=[htmlwidgets magrittr plotly Rcpp rmarkdown scales]; }; - DFA_CANCOR = derive2 { name="DFA.CANCOR"; version="0.1.6"; sha256="0pyql8xms08qn8kzf1h984ik1pbyy8z1wa1lf588pb6clwmd2mk8"; depends=[MASS MVN]; }; + DFA = derive2 { name="DFA"; version="0.1.0"; sha256="14766binxz1bv4c492r4clj77ykp31v2h5bajydfn2336zz18m5y"; depends=[]; }; + DFA_CANCOR = derive2 { name="DFA.CANCOR"; version="0.1.8"; sha256="1jcvxngghfx5sdw5vjpx7yf5nqp5ws8fnwb07ycpzsa4sgb4nddn"; depends=[MASS MVN]; }; DFIT = derive2 { name="DFIT"; version="1.0-3"; sha256="1h0wvcplb7j7dqz9hkaw30x92ngxzkdvkwpg0142hrqb201zfrac"; depends=[ggplot2 mvtnorm simex]; }; DGCA = derive2 { name="DGCA"; version="1.0.2"; sha256="0k2a24ycagyxdx54dh9w8km25xhmmmhyyl26g76z4g5gqvcw092k"; depends=[matrixStats WGCNA]; }; - DGLMExtPois = derive2 { name="DGLMExtPois"; version="0.1.2"; sha256="11gfj1pnfk9f8ap66yswbc1pq6k2n6893jadh2nvnhlkdk47bm28"; depends=[COMPoissonReg nloptr progress]; }; + DGLMExtPois = derive2 { name="DGLMExtPois"; version="0.1.3"; sha256="1prsnkkhb61y01flxz57875a9arvyy2qxjl0lz5ajpmf8dhr08j8"; depends=[COMPoissonReg nloptr progress]; }; DGM = derive2 { name="DGM"; version="1.7.2"; sha256="0z0f8bazzsahvjkpfif50db700mqb7arcglwsfxcar9qdy082vsn"; depends=[data_table ggplot2 Rcpp RcppArmadillo reshape2]; }; DGVM3D = derive2 { name="DGVM3D"; version="1.0.0"; sha256="17cxv8rm7kmxms7v7hzbwbdwa3xl1hwgiljf97ppwswglqyik9iv"; depends=[rgl]; }; - DHARMa = derive2 { name="DHARMa"; version="0.3.0"; sha256="160265r53b78lmgn9ynh0f2mqlb632rw8rvkpc72x9kwi7qw4yhw"; depends=[ape doParallel foreach gap glmmTMB lme4 lmtest MASS mgcv qgam sfsmisc spaMM]; }; + DHARMa = derive2 { name="DHARMa"; version="0.3.2.0"; sha256="1xhn8bw3fdq1wqwkabdwgv0g41zxjc38kjbj049zjn0k1y1nzhqw"; depends=[ape doParallel foreach gap glmmTMB lme4 lmtest MASS mgcv qgam sfsmisc]; }; DHBins = derive2 { name="DHBins"; version="1.1"; sha256="1g69acac7pxw8x0d9czyds7xljhbv9d686c99a3y8b4vh7dnx62s"; depends=[ggplot2]; }; - DHS_rates = derive2 { name="DHS.rates"; version="0.7.0"; sha256="11rzwwx6vvr66nfklqh6j86k3d0cdccg6l99azwqif0cmj81rdw5"; depends=[crayon haven matrixStats reshape survey]; }; - DIFboost = derive2 { name="DIFboost"; version="0.2"; sha256="0wyjk870n18lq0dwhm9ndsh5vv0d8wkrbcky68w454vzrrw1q9h8"; depends=[mboost penalized stabs]; }; - DIFlasso = derive2 { name="DIFlasso"; version="1.0-3"; sha256="195wiy0jjkq6bh2b6wrjmr5l34pzx0i2qqvwp4pzv77sx737ds0v"; depends=[grplasso miscTools penalized]; }; + DHS_rates = derive2 { name="DHS.rates"; version="0.7.1"; sha256="0n5cqbi5j57dxah04nsjr5cd0x7ini31fnqwkq6xiq7ds9k5ikf0"; depends=[crayon haven matrixStats reshape survey]; }; + DIFboost = derive2 { name="DIFboost"; version="0.3"; sha256="07x31ccy2l0drv1356g1v4jw71i7zqb3d0v856gsd3kpqhclpvx0"; depends=[mboost penalized stabs]; }; + DIFlasso = derive2 { name="DIFlasso"; version="1.0-4"; sha256="13ls5018l790cdr26431li4gi9zw03ilypszfqglg4hj485h7dyw"; depends=[grplasso miscTools penalized]; }; DIFplus = derive2 { name="DIFplus"; version="1.1"; sha256="1k03lr437gx5y762z3h40hz9kcl4m8xgrndxvbyvsgmn2h6pbwsd"; depends=[plyr TestDataImputation]; }; - DIFtree = derive2 { name="DIFtree"; version="3.1.5"; sha256="110m24brsyvkvc03b9i48alg0x2ya69bz79c4cwi2bwr1cb2xfq1"; depends=[gridBase penalized plotrix VGAM]; }; + DIFtree = derive2 { name="DIFtree"; version="3.1.6"; sha256="1ps3nb1a5dgxs187bcjsys4fpi0z4z6d84qlxg8rf1rvcfgg21r5"; depends=[gridBase penalized plotrix VGAM]; }; DIME = derive2 { name="DIME"; version="1.2"; sha256="11l6mk6i3kqphrnq4iwk4b0ridbbpg2pr4pyqaqbsb06ng899xw0"; depends=[]; }; DIMORA = derive2 { name="DIMORA"; version="0.1.0"; sha256="0qcy2pqpx7za4ckf6wvmbhz5a52j44ksn81f8j1lj0z90idj6psn"; depends=[minpack_lm numDeriv]; }; DIRECT = derive2 { name="DIRECT"; version="1.0.1"; sha256="00z4xlc9kxn19lw2b8xq6krsf5v3wfbr1ghl5ah5shr9dnv84lc1"; depends=[]; }; DISTRIB = derive2 { name="DISTRIB"; version="1.0"; sha256="0whwmmdx2k2vrjjkz4ww9v7z9ad3835819pby91119lyic27w727"; depends=[]; }; + DIZutils = derive2 { name="DIZutils"; version="0.0.4"; sha256="1z6kinc7sg88yjb27c2ljrfj3jlyj6s63kvcfyvgdm4113ljclhs"; depends=[config data_table DBI RJDBC RPostgres shiny shinyjs]; }; DIconvex = derive2 { name="DIconvex"; version="1.0.0"; sha256="0bnrq9nmryshir6ll43nz20aaqmmw0zjvfml72cpwbvrma8a3qmz"; depends=[lpSolveAPI]; }; - DJL = derive2 { name="DJL"; version="3.2"; sha256="0vagpvmnbpnlxa1gj3y3gp0npf8hvpn8lyjrcggdn58rbcm2z3q9"; depends=[car lpSolveAPI]; }; + DJL = derive2 { name="DJL"; version="3.4"; sha256="15lawdpyq1vi325jg5s5rgwi20fak7imddd3wwyh0fw69854pff3"; depends=[car lpSolveAPI]; }; DLASSO = derive2 { name="DLASSO"; version="2.0.2"; sha256="0xdygf6h89d9z4kqb46iqfxgdzq9dmkrxf9ypw78l4d8n9xx2gaa"; depends=[MASS]; }; - DLMtool = derive2 { name="DLMtool"; version="5.4.3"; sha256="0gyzwx419cby9x82i5r8xx6g7m97naj47lkay5kq5943sk7b3dvz"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo snowfall]; }; + DLMtool = derive2 { name="DLMtool"; version="5.4.5"; sha256="1ngvdi88n2qkfr24wqvla0ghwiqhlz66qn9mry9xra8js6c8camw"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo snowfall]; }; + DMCfun = derive2 { name="DMCfun"; version="0.12.1"; sha256="0bkm9mvx2zknzrdmyh0cf41yzs9m9nvy10hjic221a2nyzyr99yx"; depends=[BH dplyr optimr pbapply Rcpp tibble tidyr]; }; DMMF = derive2 { name="DMMF"; version="0.5.1.2"; sha256="0p82cfp0561j4ki20rznx46z7vqdxh128a0m0zj8d2wp3csn1aag"; depends=[raster rgdal sp]; }; DMRMark = derive2 { name="DMRMark"; version="1.1.1"; sha256="15wr6j0v9kvbv8y6flkp4svfqy059ziv89nxv91vp0pjmavhpdlz"; depends=[ellipse MCMCpack mvtnorm]; }; DMRnet = derive2 { name="DMRnet"; version="0.2.0"; sha256="1rbba8w4li240gw5z675d7skm72rh0zxzp4rhsn6ivj72jya7jw4"; depends=[glmnet grpreg]; }; DMwR = derive2 { name="DMwR"; version="0.4.1"; sha256="1qrykl9zdvgm4c801iix5rxmhk9vbwnrq9cnc58ms5jf34hnmbcf"; depends=[abind class lattice quantmod ROCR rpart xts zoo]; }; DMwR2 = derive2 { name="DMwR2"; version="0.0.2"; sha256="1vzfbz2k05j8r2hpig3d2grb99rnnh2s1sviii3prcyqicxfh0i9"; depends=[class DBI dplyr quantmod readr rpart xts zoo]; }; DNAseqtest = derive2 { name="DNAseqtest"; version="1.0"; sha256="1mpmf40vrpw8m75rlqchsnyrz12pgg5bkz7wfca5yy5sbbiwk5pf"; depends=[]; }; - DNAtools = derive2 { name="DNAtools"; version="0.2-2"; sha256="1257gwjlqg4viw9n8g6cvv9anx5filh9d4zmjdm8zqvh7kchm8yf"; depends=[multicool Rcpp RcppParallel RcppProgress Rsolnp]; }; + DNAtools = derive2 { name="DNAtools"; version="0.2-3"; sha256="10j95g9jqr7jk9ph9j3i2yblkmp4v4py8vq70rv7q56cv7dq7z32"; depends=[multicool Rcpp RcppParallel RcppProgress Rsolnp]; }; DNLC = derive2 { name="DNLC"; version="1.0.0"; sha256="05410xgpfjsydjmnzry454qcjpws9vhh252q2xq7l0scdj87ly00"; depends=[caTools fdrtool GOstats igraph locfdr mvtnorm spdep]; }; DNMF = derive2 { name="DNMF"; version="1.3"; sha256="09yp6x6vd44ahklcag96fpjgyphyn45rkqkbwr1n36a2d8vxk9nc"; depends=[doParallel foreach gplots Matrix]; }; - DNetFinder = derive2 { name="DNetFinder"; version="1.0"; sha256="0q56c2389qaq3wsqpj8s95ncm0xmbl1slr0jmpixb48hhgk0l0ji"; depends=[flare]; }; DOBAD = derive2 { name="DOBAD"; version="1.0.6"; sha256="0ifrrfm4yp1416z58qgnak042rgj1xvqby2vvzgrv19z6b3250p3"; depends=[lattice Matrix numDeriv]; }; DODR = derive2 { name="DODR"; version="0.99.2"; sha256="16ia9j8vab8n2i6a17wz8nfvkfgj2gsyhxvwgxvjg2cz99hsbhdj"; depends=[Matrix npsm Rfit]; }; DOS = derive2 { name="DOS"; version="1.0.0"; sha256="0vvkwn4wfvspbk74nb6124hdx9158h6yfksib14xqq7rx7c97ad4"; depends=[MASS]; }; @@ -970,29 +996,32 @@ in with self; { DOvalidation = derive2 { name="DOvalidation"; version="1.1.0"; sha256="1mzws3w7djpxnfqxjcqwgia7p17kb0qlnzj6qcfg2m1vamb1cn2z"; depends=[]; }; DPBBM = derive2 { name="DPBBM"; version="0.2.5"; sha256="1qypxrcm3sb727lqb09ssjf3hblixqayw3qsyql01imrxwm609i2"; depends=[CEoptim gplots tmvtnorm VGAM]; }; DPP = derive2 { name="DPP"; version="0.1.2"; sha256="1qalcm4gwh03qpy07d0p323ccq8xmk04v6z30g7wg6ic613bqg7m"; depends=[coda Rcpp]; }; - DPQ = derive2 { name="DPQ"; version="0.3-5"; sha256="0952aq9nh18mwldcxdi170i6aqz6snnsvl5g6qm8jq2m1i9jryjw"; depends=[sfsmisc]; }; + DPQ = derive2 { name="DPQ"; version="0.4-1"; sha256="1yz905cl0fcafnp5fm1nw0a24m38lgamsm2fxqnlzxmybhfphpxk"; depends=[sfsmisc]; }; DPWeibull = derive2 { name="DPWeibull"; version="1.5"; sha256="1dxrhd3wklg7q3grvplas6wcbs05kga1b2va6d0wkynld01ww9ii"; depends=[binaryLogic Rcpp truncdist]; }; DPtree = derive2 { name="DPtree"; version="1.0.1"; sha256="0d7zf695lwkx4gv50f08cbi3p3mjjay0qgrbmvybf9m15i4zmyd7"; depends=[MASS MCMCpack plyr Rdpack]; }; DRAYL = derive2 { name="DRAYL"; version="1.0"; sha256="0cf5pyx6nwh8srdylpnmymv3dr67fm6qqpwd1hvj1wmyfc8fznpp"; depends=[cubature pracma RConics rmutil]; }; + DRDID = derive2 { name="DRDID"; version="1.0.0"; sha256="0fb23sn8v0y35czmg3hh8qff2w329k2aw00q3paxm3sas6ih72rz"; depends=[BMisc trust]; }; DREGAR = derive2 { name="DREGAR"; version="0.1.3.0"; sha256="15cplshs85r0z659mc7xmj5db7vc95wxs01c34isc22p8z0a287i"; depends=[msgps]; }; - DRHotNet = derive2 { name="DRHotNet"; version="1.1"; sha256="040g9h2a2hmnd20y41xnms01iam68f6xhp2x0ckarmx961995bhg"; depends=[maptools PBSmapping raster sp spatstat spdep]; }; + DRHotNet = derive2 { name="DRHotNet"; version="1.2"; sha256="0qvxxqcixzxg6gxgnafgfxwpy5haxgh4nbj9axk3kb9gn3b5g6mq"; depends=[maptools PBSmapping raster sp spatstat spdep]; }; DRIP = derive2 { name="DRIP"; version="1.4"; sha256="1rds1161h19waqhiq08hqk5zcn48afccaggmb42xr1zyk31irpi6"; depends=[readbitmap]; }; DRR = derive2 { name="DRR"; version="0.0.4"; sha256="1y70si1gig4l7jx5jiqsqliyywfsvimkx53x3zh1lc3yj2j6bqwk"; depends=[CVST kernlab Matrix]; }; DRaWR = derive2 { name="DRaWR"; version="1.0.1"; sha256="1pfdczwzd236c64yw94bgbk0hbl4dhlgjfjwkljmqgqrzsddvgqh"; depends=[Matrix ROCR]; }; DRomics = derive2 { name="DRomics"; version="2.0-1"; sha256="0lfjk202fgvxjljjpakbmdqc41hbpgl39lym215hlqksfpi0jq7a"; depends=[DESeq2 ggplot2 limma]; }; DSAIDE = derive2 { name="DSAIDE"; version="0.8.3"; sha256="0n1ffv48202pnnsdcd3zpgpviy8613fcgx5c796whjffrc4v8m31"; depends=[adaptivetau deSolve dplyr ggplot2 gridExtra lhs nloptr plotly shiny XML]; }; - DSAIRM = derive2 { name="DSAIRM"; version="0.8.2"; sha256="05m6hm9h8f41n3wswbp7z80kfvmn65jypj9fwlv3k8bdm4lw1mla"; depends=[adaptivetau boot deSolve dplyr ggplot2 gridExtra lhs nloptr plotly shiny XML]; }; + DSAIRM = derive2 { name="DSAIRM"; version="0.8.6"; sha256="1c43k56ly4bdfv6drd3zj9dgxg77dy3h36ya2znk2xgkq03smh4y"; depends=[adaptivetau boot deSolve dplyr ggplot2 gridExtra lhs nloptr plotly rlang shiny tidyr XML]; }; DSBayes = derive2 { name="DSBayes"; version="1.1"; sha256="0iv4l11dww45qg8x6xcf82f9rcz8bcb9w1mj7c7ha9glv5sfb25v"; depends=[BB]; }; - DSI = derive2 { name="DSI"; version="1.0.0"; sha256="0dc9xhmz4pg5d8pm2wiya7b0m793kx1campnaxl8mcs2gvdfahm9"; depends=[progress R6]; }; + DSI = derive2 { name="DSI"; version="1.1.0"; sha256="0ggwfm2678gc98kkprdjyghb9dyydv5wwmh7dy7xl51pi80zplci"; depends=[progress R6]; }; DSL = derive2 { name="DSL"; version="0.1-7"; sha256="05wj3zypr2kqfbka930qnwnk2r43pqi13pbs5n6lm8vdq4zjblw4"; depends=[]; }; - DSLite = derive2 { name="DSLite"; version="1.0.0"; sha256="05dd3bdlk0xsl5d6pc1sfraypjjppfpairg4k9vh1ca4a3cq8sr8"; depends=[DSI R6]; }; - DSSAT = derive2 { name="DSSAT"; version="0.0.1"; sha256="06a5n484pc49ynrzaf3fm04884z6qwhd6kw0n4834fynpnflkkym"; depends=[dplyr glue lubridate purrr readr rlang stringr tidyr]; }; + DSLite = derive2 { name="DSLite"; version="1.1.0"; sha256="16nd178lgx89i1qacv9xs8r127kxzchkn3757ps35anci50h8kbh"; depends=[DSI R6]; }; + DSOpal = derive2 { name="DSOpal"; version="1.1.0"; sha256="0n0112alq946zm8am13v5p35kmkc57yfwcbc085sfydpmcwbsjnj"; depends=[DSI opalr]; }; + DSSAT = derive2 { name="DSSAT"; version="0.0.2"; sha256="15v64cgbfi51kj3p2wjmir8cfznhilx4gsd5w24734lwblmqf1bm"; depends=[dplyr glue lubridate purrr readr rlang stringr tidyr]; }; DSpat = derive2 { name="DSpat"; version="0.1.6"; sha256="1v6dahrp8q7fx0yrwgh6lk3ll2l8lzy146r28vkhz08ab8hiw431"; depends=[mgcv RandomFields rgeos sp spatstat]; }; DSpoty = derive2 { name="DSpoty"; version="0.1.0"; sha256="18z8gk3zj7k2szxg9579qy5klrqjw6zsk5x9jmwrv4qhb98fyji6"; depends=[dplyr httr purrr stringr]; }; DSsim = derive2 { name="DSsim"; version="1.1.5"; sha256="0dr8dc91m7s5c198k9cb26a09f14wb8ihr46c0mr9cg33l2wf3nv"; depends=[fields mgcv mrds rgeos shapefiles sp splancs]; }; DStree = derive2 { name="DStree"; version="1.0"; sha256="14wba25ylmsyrndh007kl377dv4r34wr1555yxl6kyxrs4yg3jir"; depends=[Ecdat pec Rcpp rpart rpart_plot survival]; }; DSviaDRM = derive2 { name="DSviaDRM"; version="1.0"; sha256="1hj2pgnldrpgapwwz1kf4k6mvyzwdvb1i6czd7sbimsx5hafwps8"; depends=[igraph ppcor]; }; - DT = derive2 { name="DT"; version="0.13"; sha256="1db35mi4m4q3kha4vhvh693bv04y7h9pdawhsx8f234qjvz7783r"; depends=[crosstalk htmltools htmlwidgets jsonlite magrittr promises]; }; + DT = derive2 { name="DT"; version="0.15"; sha256="1wc2aiqkn01i571h29847yaq7vb624bkf44axp4ygpn0r85hdq7k"; depends=[crosstalk htmltools htmlwidgets jsonlite magrittr promises]; }; + DTAT = derive2 { name="DTAT"; version="0.3-4"; sha256="1ddmih8cxbgc1p4m0sm8gdbnf0d3ka8z7014zd4aykz75j3pr002"; depends=[data_table dplyr Hmisc jsonlite km_ci pomp r2d3 shiny survival]; }; DTAXG = derive2 { name="DTAXG"; version="0.1.0"; sha256="1jxa0ix0z35i0xdnjl698j8iqjmp6nz8ckah9bap5ay9rkq0xd7f"; depends=[]; }; DTComPair = derive2 { name="DTComPair"; version="1.0.3"; sha256="1af2293ckkpz0gjcibgzzvz37852cav4wa4girpc87yn3p4ajlri"; depends=[gee PropCIs]; }; DTDA = derive2 { name="DTDA"; version="2.1-2"; sha256="1nc4j6pzbk5g967k9vh06v8gfr88h611fw6zbvrp2iy6z22arpgf"; depends=[]; }; @@ -1002,11 +1031,12 @@ in with self; { DTMCPack = derive2 { name="DTMCPack"; version="0.1-2"; sha256="0bibas5cf06qq834x9q2l2fyh6q9wrg07k8cn6almcyirzax6811"; depends=[]; }; DTR = derive2 { name="DTR"; version="1.7"; sha256="1lzvk9ar6xf3n2vvy8vb9mvrbx3nafzzhvz5g7vf79jd71yz54jd"; depends=[aod ggplot2 survival]; }; DTRlearn2 = derive2 { name="DTRlearn2"; version="1.1"; sha256="0l756zb1wkpa1z5zjkc8jndmh2630gckxxfqslabzjmgsjf7fjgm"; depends=[foreach glmnet kernlab MASS Matrix]; }; - DTRreg = derive2 { name="DTRreg"; version="1.5"; sha256="0milc5bmks6pxhl5f3zyv3w80ld733v05cvx8i531v2ynac4v6zb"; depends=[]; }; - DTSg = derive2 { name="DTSg"; version="0.4.0"; sha256="0if4h5660wl5pb187lfhv00gdr9wp43w5xk1g4hf83jbnq06q424"; depends=[checkmate data_table R6]; }; + DTRreg = derive2 { name="DTRreg"; version="1.6"; sha256="10r81d5b9g4znbpkbcip4wfipq7r4fsgmqvinhvkhsnnwghb865w"; depends=[dplyr MASS]; }; + DTSg = derive2 { name="DTSg"; version="0.6.0"; sha256="1g5i9cizbm6r5h1vjgsnjlylbir4911ixc6mifwxknapfd7clib3"; depends=[checkmate data_table R6]; }; DTWBI = derive2 { name="DTWBI"; version="1.1"; sha256="06lp4yc5nhacrgic78l014g2w1ibwgs8dp8zrahk5aripaczl25y"; depends=[dtw e1071 entropy lsa rlist]; }; DTWUMI = derive2 { name="DTWUMI"; version="1.0"; sha256="0pybgbfs2yp2ljbs0kra5z70x3llkiwdngp6cadgs3j9rar4vq4q"; depends=[dtw DTWBI e1071 entropy lsa rlist]; }; DVHmetrics = derive2 { name="DVHmetrics"; version="0.3.10"; sha256="1d8zig3ljld05pwaqsahyvjf95y8k183al5ibx09h6hj3r5bfd8n"; depends=[DT ggplot2 KernSmooth reshape2 shiny]; }; + DWBmodelUN = derive2 { name="DWBmodelUN"; version="1.0.0"; sha256="1m71fx9l2rq27d2q5hiqxiyljvf5wjcfkcblqw19rpiixrinv4va"; depends=[dygraphs htmltools ncdf4 raster rgdal]; }; DWDLargeR = derive2 { name="DWDLargeR"; version="0.1-0"; sha256="1bxdvgj38xv2xj98njpyhy12b54nccwnc3v92kkpd3i7nwbw48dy"; depends=[Matrix SparseM]; }; DWLasso = derive2 { name="DWLasso"; version="1.1"; sha256="1i8j8wjfvg69ldr8ahz1zv3m2wgxd701iph94ad22zs9qwqfg16z"; depends=[glmnet hglasso Matrix]; }; DWreg = derive2 { name="DWreg"; version="2.0"; sha256="0bgahzgcxz86n0ady97l48zyahv3p2iyc2ivbij1xrfx3wcx3b5n"; depends=[DiscreteWeibull Ecdat maxLik survival]; }; @@ -1014,29 +1044,31 @@ in with self; { DamiaNN = derive2 { name="DamiaNN"; version="1.0.0"; sha256="09viy1lilz0b29s3myky03981bfnhxjxxgfhdah33cn5x682rbp4"; depends=[caret testthat]; }; DandEFA = derive2 { name="DandEFA"; version="1.6"; sha256="1ir1z76c8742vqdlwv35l4rhr0x7lhghz24g35zn7b30671lypf8"; depends=[gplots polycor]; }; Dark = derive2 { name="Dark"; version="0.9.8"; sha256="1f01aq4g50f07005c8k91cfy9hvl3fmb4yl2924d7512m3884xlv"; depends=[]; }; - DarkDiv = derive2 { name="DarkDiv"; version="0.2.0"; sha256="0ygd79bgyajm1p58l0anprglcgi0gsflnc4ml61zq91pf6nhczlf"; depends=[vegan]; }; + DarkDiv = derive2 { name="DarkDiv"; version="0.3.0"; sha256="0cjf5rpn4myd21rh04bk2gjk65rjx77mn8mxy4ym704fiycrsj87"; depends=[vegan]; }; Dasst = derive2 { name="Dasst"; version="0.3.3"; sha256="0nrcvcfzr2y1jc984rpi3fmggns65sphc6nqr9l91h5qvpdcw7cl"; depends=[]; }; DatAssim = derive2 { name="DatAssim"; version="1.0"; sha256="120gazyyxda9faydv2lyqgvflhqi2fhih1szq0sy5v1gh4xb0hhy"; depends=[Rcpp RcppArmadillo]; }; - Data2LD = derive2 { name="Data2LD"; version="2.0.0"; sha256="145lvrscq3iyc7cy6xr0vrm5qa2323m3c3g2ikdhj18rhzx4r46k"; depends=[deSolve fda Matrix]; }; + Data2LD = derive2 { name="Data2LD"; version="3.2.1"; sha256="1y6nyysm96q5mlrcl0vkjhq5lr624n2266xpmyl4ck0h1dhjb6bz"; depends=[deSolve fda knitr rmarkdown]; }; DataClean = derive2 { name="DataClean"; version="1.0"; sha256="0wkafjyp6c2mx7g1bpz2pbxyl5nm2wba2hly8miizv0fdc762za5"; depends=[xlsx XML]; }; DataCombine = derive2 { name="DataCombine"; version="0.2.21"; sha256="0iwb4726bk0cjhay694dp43b1553yyk9lpxbncs85kz229b26arm"; depends=[data_table dplyr]; }; + DataEditR = derive2 { name="DataEditR"; version="0.0.5"; sha256="0mqwbz2g3k1b9pxzznv6v8l47ggkwdkcbpg1d0j9mqgmlkadvd5a"; depends=[htmltools rhandsontable shiny shinythemes]; }; DataEntry = derive2 { name="DataEntry"; version="0.9-3"; sha256="0gfsg7wfwy88x7y1dwpgwi6fkizjnhrzj0a5ij70y4a4sjmyiy55"; depends=[digest gWidgets2 gWidgets2RGtk2 RGtk2]; }; DataExplorer = derive2 { name="DataExplorer"; version="0.8.1"; sha256="0724ngcw2b1i2cf8jbak61saqk71f06wszvx7nhba4n0z8l503cz"; depends=[data_table ggplot2 gridExtra networkD3 reshape2 rmarkdown scales]; }; DataGraph = derive2 { name="DataGraph"; version="1.2.1"; sha256="164wbh3by8qf0p84l5v7vwrzf0f2s305fwmrl01khcll8pk34xlm"; depends=[Rcpp]; }; DataLoader = derive2 { name="DataLoader"; version="1.3"; sha256="18mih6mb95v5xjvmqwby2mma74fcxwyqdm5w8j3bhi4iwgfn6d7v"; depends=[plyr rChoiceDialogs readxl xlsx]; }; - DataPackageR = derive2 { name="DataPackageR"; version="0.15.7"; sha256="11bra0kgmvag4mp6hpljd8m3r1306cbncmz3x71iybkahimws813"; depends=[assertthat crayon desc devtools digest futile_logger knitr purrr rmarkdown roxygen2 rprojroot stringr usethis yaml]; }; DataSpaceR = derive2 { name="DataSpaceR"; version="0.7.3"; sha256="0jg77zq12fvwnzfdk83y6wi4547g9r5zlvhjmjj1bp0xp7spcbyk"; depends=[assertthat curl data_table digest httr jsonlite R6 Rlabkey]; }; - DataVisualizations = derive2 { name="DataVisualizations"; version="1.1.11"; sha256="160jrajyr6vhj05233602b2k5lh3l1znd73hn4vxak7qjh2rajkm"; depends=[ggplot2 Rcpp RcppArmadillo sp]; }; + DataVisualizations = derive2 { name="DataVisualizations"; version="1.2.0"; sha256="10hjhxqm0f8s59x8hqn1nfganx4974lfkcghlqsi686h7vd7fzb3"; depends=[ggplot2 Rcpp RcppArmadillo sp]; }; DataViz = derive2 { name="DataViz"; version="0.2.8"; sha256="1dr5nvdzc63x9ymlysvv5i8b7zcffq13pa39q0ychdwr1s3x7vzw"; depends=[Rcpp tibble]; }; - DatabaseConnector = derive2 { name="DatabaseConnector"; version="2.4.2"; sha256="1q83lw8zxzq2d1gdcsbr4mqjz6gz0c3m2vi4l8x4mj9kf497dvc3"; depends=[bit DatabaseConnectorJars DBI ff ffbase rJava SqlRender urltools]; }; + DatabaseConnector = derive2 { name="DatabaseConnector"; version="3.0.0"; sha256="01a4xx7wdfmpvbq2ywdjg7pc90a2xa1rf3ka8vm4xbz31ir066y5"; depends=[DatabaseConnectorJars DBI rJava SqlRender stringr urltools]; }; DatabaseConnectorJars = derive2 { name="DatabaseConnectorJars"; version="1.1.0"; sha256="18m6ynj30r5xdy51b3s39h0jcz1k2wgka888skr6ds2233lhqk2w"; depends=[rJava]; }; DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.1.3"; sha256="1qjlczpxadvzjn4gl2q7rnmpgygsh8ylk8cfvmynx8p675g657cz"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo]; }; Davies = derive2 { name="Davies"; version="1.1-9"; sha256="19n2szki2dc8z01zh5a7bq4scgisnpd2qqbiimgrswjrykgh2fpm"; depends=[]; }; + DeCAFS = derive2 { name="DeCAFS"; version="3.1.5"; sha256="0f56xl4is1cknlg55s2vprcf8f41if1vn0hh4xxhpficc6pxmnbv"; depends=[ggplot2 Rcpp]; }; DeLorean = derive2 { name="DeLorean"; version="1.5.0"; sha256="1ry6j4mvxms9hddi9c56p9yhjh66fzss41wqkf6xq398h1wbn4q1"; depends=[BH broom coda dplyr fastICA functional ggplot2 kernlab lattice MASS memoise Rcpp RcppEigen reshape2 rstan rstantools seriation StanHeaders stringr]; }; DeRezende_Ferreira = derive2 { name="DeRezende.Ferreira"; version="0.1.0"; sha256="05c99z3hlwwm0p02cl9z6gjwfxfq2b2qn90l85270bi16llgf42h"; depends=[xts]; }; DealGPL570 = derive2 { name="DealGPL570"; version="0.2.0"; sha256="1c202gzbhqaisxvpiiajcbfsjnqrvygd19304m2n89ansv81vi8r"; depends=[affy dplyr GEOquery stringr tibble]; }; + DecisionAnalysis = derive2 { name="DecisionAnalysis"; version="1.1.0"; sha256="0vgvp1c6n8lmi48w1n5v86f8vrf7pf0dksb8wr3fxzg41nc9whrm"; depends=[Cairo data_tree DiagrammeR dplyr ggplot2 gridExtra qpdf tidyr viridisLite]; }; DeclareDesign = derive2 { name="DeclareDesign"; version="0.22.0"; sha256="1c4ij70d2002rj595fzik75x44jf0gdnrs4bbm5fv4lqnbrm5j37"; depends=[estimatr fabricatr generics randomizr rlang]; }; - DecomposeR = derive2 { name="DecomposeR"; version="1.0.1"; sha256="1p64l2h8c67faybw7v0zvl11y4wcm13i189ssnbh7m2bd460dpql"; depends=[colorRamps dplyr hexbin hht StratigrapheR]; }; + DecomposeR = derive2 { name="DecomposeR"; version="1.0.2"; sha256="0qimryr3hrl2ni99i3l9m7l4sfz0pkv9nmghh1yjb7wc0hdlayfk"; depends=[colorRamps dplyr hexbin hht StratigrapheR]; }; DecorateR = derive2 { name="DecorateR"; version="0.1.1"; sha256="1dvyadlksqv8ns043yh91f6kw162k6r0zwn13j1g6pvismw04br9"; depends=[rJava RWeka RWekajars]; }; Deducer = derive2 { name="Deducer"; version="0.7-9"; sha256="14kakyf28i654pndlswjzp6h3h7szpznrg6xznqg150mmn0bs3s6"; depends=[car e1071 effects foreign ggplot2 JGR MASS multcomp plyr rJava scales]; }; DeducerPlugInExample = derive2 { name="DeducerPlugInExample"; version="0.2-0"; sha256="03aw7wr957xzw920ybyzxnck5kx0q2xpcrpq8jh2afyzszy6hzbi"; depends=[Deducer]; }; @@ -1044,11 +1076,12 @@ in with self; { DeducerSpatial = derive2 { name="DeducerSpatial"; version="0.7"; sha256="0133qk3yjcifyha7c4pqr5s0hmbci72bzgil2r0sxjmrljs3q727"; depends=[Deducer Hmisc JavaGD maptools OpenStreetMap rgdal scales sp UScensus2010]; }; DeducerSurvival = derive2 { name="DeducerSurvival"; version="0.1-0"; sha256="03qk3y4pibvrxbnxbm5rlksw807dvbilip1jbpn1r7k02ibzq676"; depends=[Deducer]; }; DeducerText = derive2 { name="DeducerText"; version="0.1-2"; sha256="0if2p9j74wa5rva4iv0i8iax22grl9j7lqcqzqlywjgqwnlzxa05"; depends=[Deducer RColorBrewer SnowballC tm wordcloud]; }; - Delaporte = derive2 { name="Delaporte"; version="7.0.2"; sha256="0qm6k9c9fs94csk9i8alxczjsr5nsgl2cfzd0l7qbh7yd8sj8vd7"; depends=[]; }; + Delaporte = derive2 { name="Delaporte"; version="7.0.3"; sha256="1gwsnrdgiz9sx2hnpywvps1rbxxibcrkq0z43ls0gzpydcjv2dmi"; depends=[]; }; DelayedEffect_Design = derive2 { name="DelayedEffect.Design"; version="0.0.4"; sha256="0n1dw9bqisfarg7him49mzqn60gcfr660d5x9k6b37r12dnmy48v"; depends=[msm survival]; }; Delta = derive2 { name="Delta"; version="0.2.0.3"; sha256="0bi9qca4ky481zycp8r7ihvqfjkpvi7hb9wrjsw9avawqa6ck9bv"; depends=[]; }; Demerelate = derive2 { name="Demerelate"; version="0.9-3"; sha256="1bsf09di6nh0hznqx829jnbn3092rya03hnc82cns6rm8d3bn0a9"; depends=[fts mlogit sfsmisc vegan]; }; DemoDecomp = derive2 { name="DemoDecomp"; version="1.0.1"; sha256="0m24ld8s3ph8qcbkqma5y5k5nv0d0vgb7wz8q20gxnfbj2kbcvjv"; depends=[Rdpack]; }; + DemografixeR = derive2 { name="DemografixeR"; version="0.1.1"; sha256="16qd1wbzizvg86bqkk8fvb53g6h30l5v99cjxpnr43qf0r4drz3j"; depends=[httr jsonlite magrittr]; }; DendSer = derive2 { name="DendSer"; version="1.0.1"; sha256="0id6pqx54zjg5bcc7qbxiigx3wyic771xn9n0hbm7yhybz6p3gz9"; depends=[gclus seriation]; }; DendroSync = derive2 { name="DendroSync"; version="0.1.3"; sha256="1q3bn4aqr4gkazx8cpwbwx29paxg8lr6r2fn8h7jjpzpglj51d0m"; depends=[ggplot2 gridExtra nlme]; }; DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; }; @@ -1057,53 +1090,57 @@ in with self; { DepLogo = derive2 { name="DepLogo"; version="1.0"; sha256="0h4jpflf8amip62r936lg0k428gypag296kwl58w1d0qa5jyxrkk"; depends=[]; }; DepthProc = derive2 { name="DepthProc"; version="2.1.3"; sha256="1dq5y6fgmm00imkim4v2s6kn4z5qnwa0dkfkcq4pap7imvi35aab"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; }; Deriv = derive2 { name="Deriv"; version="4.0"; sha256="03mlfy8jzzzbh2l18gnmw0a71n9savx4cw72yhkxq93v2xj8fy3n"; depends=[]; }; - DescTools = derive2 { name="DescTools"; version="0.99.34"; sha256="01sj4p27npxvljg68sn75wd334mm4fkan5ydvr0h2kik620swwqy"; depends=[BH boot expm MASS mvtnorm Rcpp]; }; + DescTools = derive2 { name="DescTools"; version="0.99.37"; sha256="1pjgmvdwlzjbbwj27fkf7w87k6k1brl8j13qyx49y1nd1blfkspm"; depends=[BH boot Exact expm MASS mvtnorm Rcpp rstudioapi]; }; DescToolsAddIns = derive2 { name="DescToolsAddIns"; version="1.7"; sha256="0k9qsz6wn97gy23rzm1rr8c6az05xr01jnsqcxknalkx6hj8h1mg"; depends=[DescTools foreign manipulate rstudioapi writexl]; }; DescribeDisplay = derive2 { name="DescribeDisplay"; version="0.2.7"; sha256="0241mbz0y3ala7fsb4fwjd0xigsk0wq77hfrjyvnnp97rfjfzmcv"; depends=[GGally ggplot2 plyr reshape2 scales]; }; - DescriptiveStats_OBeu = derive2 { name="DescriptiveStats.OBeu"; version="1.3.1"; sha256="1bqq56m4vhmgijxpyllpy08xx29k0p7lhmd0iwa06jdw4lj5rdah"; depends=[dplyr jsonlite magrittr RCurl reshape]; }; + DescriptiveStats_OBeu = derive2 { name="DescriptiveStats.OBeu"; version="1.3.2"; sha256="0f2inlfkwl2q9ll5lh0ynpsbf6zci149s5nj0s0x0g98z72z8mly"; depends=[dplyr jsonlite magrittr RCurl reshape]; }; DesignLibrary = derive2 { name="DesignLibrary"; version="0.1.4"; sha256="16j9ca3y8mcdbd64yqm6js4lb9hjc74dh4r5y3h1ifvwzj0a78yc"; depends=[DeclareDesign estimatr fabricatr generics glue randomizr rlang]; }; + DetLifeInsurance = derive2 { name="DetLifeInsurance"; version="0.1.2"; sha256="1d9fi77vfy1494qgskx1v0b8k84fnl17kd14agf3mxhzhxkixpnm"; depends=[]; }; DetMCD = derive2 { name="DetMCD"; version="0.0.5"; sha256="034wb5hwpikli6h2rwiqr19qvzxrr4qwi4q436y7c5a5wgkfzgl5"; depends=[pcaPP Rcpp RcppEigen robustbase]; }; DetR = derive2 { name="DetR"; version="0.0.5"; sha256="1dd4nzkgj5pl9397aa0z3q5fpl27xbdf7q0pqbs821dyynylxzn9"; depends=[MASS pcaPP Rcpp RcppEigen robustbase]; }; DetSel = derive2 { name="DetSel"; version="1.0.4"; sha256="01mpjy1cmgbrchdjl0gmrq3zx3mlkznml1qcradj2v5mgz26ifrv"; depends=[ash]; }; DevTreatRules = derive2 { name="DevTreatRules"; version="1.1.0"; sha256="1h4p78mwl5ir31hfb38x1dwq5xxbdlsasvk5vxa3c7xdvhsd2yrf"; depends=[DynTxRegime glmnet modelObj]; }; Devore7 = derive2 { name="Devore7"; version="0.7.6"; sha256="1m18p8h9vv4v0aq2fkjyj39vzb8a09azbbczhfiv4y88w540i8nw"; depends=[lattice MASS]; }; Dforest = derive2 { name="Dforest"; version="0.4.2"; sha256="19jyph2zqfyq9vv22kb6fqy89l0vcviv19zgk10hbd7q850f6ryn"; depends=[ggplot2 rpart]; }; + DiPALM = derive2 { name="DiPALM"; version="1.0"; sha256="1l7rd2jbviipywnx8fkls21qmzj8kd57158g46s6222yv17rl4qy"; depends=[ggplot2 limma WGCNA]; }; DiPhiSeq = derive2 { name="DiPhiSeq"; version="0.2.0"; sha256="11l2inf99vxz9k292307j8c2b25kc1066svy3vxrfl72rrm4fqa7"; depends=[]; }; DiPs = derive2 { name="DiPs"; version="0.6.1"; sha256="0r6r0i417z4ax7cw1a7jbjhi0h2i2n43vf0y4770hyrl3m6spwfj"; depends=[liqueueR mvnfast plyr]; }; DiSSMod = derive2 { name="DiSSMod"; version="1.0.0"; sha256="199yipbc2sx2lsl51rpfyh80bfxaahfd2llqmfsp946gvj7339hv"; depends=[MASS matrixcalc psych sfsmisc]; }; - DiagrammeR = derive2 { name="DiagrammeR"; version="1.0.5"; sha256="0d73aiv4fra1xwq63n3139anp479ni7dh370lxc3rc15g5qayxq8"; depends=[downloader dplyr glue htmltools htmlwidgets igraph influenceR magrittr purrr RColorBrewer readr rlang rstudioapi scales stringr tibble tidyr viridis visNetwork]; }; + DiagrammeR = derive2 { name="DiagrammeR"; version="1.0.6.1"; sha256="0gb7ccdrh7jlyqafdk8zs465ygczxxd25s05whn914in1994qkmy"; depends=[downloader dplyr glue htmltools htmlwidgets igraph influenceR magrittr purrr RColorBrewer readr rlang rstudioapi scales stringr tibble tidyr viridis visNetwork]; }; DiagrammeRsvg = derive2 { name="DiagrammeRsvg"; version="0.1"; sha256="0j2cm1mx3zrb2k3pcrb96z2z3kws61gyyjsjjv5rqcb5lzdgi65k"; depends=[V8]; }; - DiallelAnalysisR = derive2 { name="DiallelAnalysisR"; version="0.1.1"; sha256="1diwzckn0f2dv0vj2mdzy7k3md6j472xzj82ip23adwr27vlfsi3"; depends=[ggplot2]; }; + DiallelAnalysisR = derive2 { name="DiallelAnalysisR"; version="0.3.0"; sha256="10qfjskawrdrvayrzxpblx9jxwngpwwi1q5aisvx3rpf9c3xrii2"; depends=[ggplot2]; }; DiceDesign = derive2 { name="DiceDesign"; version="1.8-1"; sha256="11s1m543kxd6gv4amh8z6pph1n67sj9sfwm6hjy83wfs65syf5vp"; depends=[]; }; - DiceEval = derive2 { name="DiceEval"; version="1.4"; sha256="06p3v161ig714k7z59iji64xhxw1a68kqhnlwhwpjpyrx7kn137b"; depends=[DiceKriging]; }; + DiceEval = derive2 { name="DiceEval"; version="1.5"; sha256="0yvpq0bbp70ipjc9bg2jf0ah7m5nsil669vhky11f42kijm8rsj2"; depends=[DiceKriging]; }; DiceKriging = derive2 { name="DiceKriging"; version="1.5.6"; sha256="14jfwvj8vhrngcpkqdzr6klhnqwgr1g5wm5rqz8q6w7ip4nnsii5"; depends=[]; }; - DiceOptim = derive2 { name="DiceOptim"; version="2.0"; sha256="1hx4379yb6d36c494qc237vld4jnfxq18m994p5ii9ks6s7amifn"; depends=[DiceDesign DiceKriging mnormt pbivnorm randtoolbox rgenoud]; }; - DiceView = derive2 { name="DiceView"; version="1.3-2"; sha256="0ny9gbaycrq3lr4gqil1yyhkkyxmabl8w6cmkkzlx3yaara0idkf"; depends=[DiceEval DiceKriging rgl]; }; + DiceOptim = derive2 { name="DiceOptim"; version="2.0.1"; sha256="09qggq9csnvc0y8i9cki33095yfjidfirs11lri4aspsg5vjsiv4"; depends=[DiceDesign DiceKriging mnormt pbivnorm randtoolbox rgenoud]; }; + DiceView = derive2 { name="DiceView"; version="2.0-0"; sha256="041k45xmh4ks8gxvahlvxnigizljmyk3n9xb83wmnrng9z5jbr94"; depends=[DiceDesign DiceEval DiceKriging geometry R_cache rgl scatterplot3d]; }; + Dict = derive2 { name="Dict"; version="0.1.0"; sha256="1v8yp03gajg9i82qyfww14jx93l4jbfq8mh6jqyf6calgrsj06jc"; depends=[dplyr magrittr purrr R6 rlang]; }; DidacticBoost = derive2 { name="DidacticBoost"; version="0.1.1"; sha256="0z1h61n6nfjvb64fgkzi1sq7ag747crhh593hxkx0cpza29778rz"; depends=[rpart]; }; Diderot = derive2 { name="Diderot"; version="0.13"; sha256="04d1drxn99r0fqq3zym7yyip9c8rfqhghq20q4zyb42l3hfgv9ai"; depends=[data_table doParallel foreach igraph RCurl splitstackshape stringi]; }; DiffCorr = derive2 { name="DiffCorr"; version="0.4.1"; sha256="1kxp9dbiww086rmvmjvfhbk7jl36dkj88qwii6zg57llf7l5l4hm"; depends=[fdrtool igraph multtest pcaMethods]; }; DiffNet = derive2 { name="DiffNet"; version="1.0-0"; sha256="04dvf0qxnc6jizwfjxw731j7d2fxyapk06rmqvga6h3p075q0mqk"; depends=[data_table doParallel foreach gplots Hmisc igraph lsa Matrix qlcMatrix Rcpp RcppEigen]; }; - DiffXTables = derive2 { name="DiffXTables"; version="0.1.0"; sha256="1la512kvq1ziw1b3zzn2khh4cjcq2lwq1r17b84x7f4spbfp5l2b"; depends=[]; }; + DiffXTables = derive2 { name="DiffXTables"; version="0.1.1"; sha256="1yjykxc3y6jclhl28capqgjz2qj7sizr4y1g4d6whllgfawvwfby"; depends=[pander Rdpack]; }; DiffusionRgqd = derive2 { name="DiffusionRgqd"; version="0.1.3"; sha256="1gf5jpvimfrc9ccva0jk85rl4zfkbijm2305ky1rxcgm4kgw4lax"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; DiffusionRimp = derive2 { name="DiffusionRimp"; version="0.1.2"; sha256="1h7145ldlgwrrwj4l1wxdp2rbg2pm4v3pngiq0saz0xi3vpcxwl6"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; DiffusionRjgqd = derive2 { name="DiffusionRjgqd"; version="0.1.1"; sha256="1yb1jaq324qm2x8cl3bs2dflnsx8yfygpw2m3kk5hzaai9gfkqjf"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; DirectEffects = derive2 { name="DirectEffects"; version="0.2"; sha256="0cawn1i1cyczsr9zpcaky79dfdl9anfjgiaa2404capacnj3call"; depends=[Formula glue sandwich]; }; DirectStandardisation = derive2 { name="DirectStandardisation"; version="1.3"; sha256="1qlfvzlig3a2v78fiq6sbbpxklmjczikxdw57m6mqngzrl9vdl2g"; depends=[]; }; DirectedClustering = derive2 { name="DirectedClustering"; version="0.1.1"; sha256="1shdqz0c5bbgknvfqr3ais26cb5mpywnah3d3584w97sy8v7gxm2"; depends=[igraph]; }; - Directional = derive2 { name="Directional"; version="4.3"; sha256="0kbwf3rzh776y7hk8zbb5yq01pm5m5bx5brap8dv5lgxg083jxq8"; depends=[bigstatsr doParallel foreach MASS RANN Rfast Rfast2 rgl]; }; - DirichletReg = derive2 { name="DirichletReg"; version="0.6-3.1"; sha256="1lz4b166grrs6vs98mf6a0wg4hvh0p901h697h9dkfhkxw8cqj3f"; depends=[Formula maxLik rgl]; }; + Directional = derive2 { name="Directional"; version="4.4"; sha256="0119yi3l4zmb6n3n8jbhvmzz6cwr10z0cpyzd0n8mz7024vvka7w"; depends=[bigstatsr doParallel foreach MASS RANN Rfast Rfast2 rgl]; }; + DirichletReg = derive2 { name="DirichletReg"; version="0.7-0"; sha256="10189c3mj85nbqp7fd5ll4g0qr950309hhma4b7bpv2gb7hvpzsp"; depends=[Formula maxLik]; }; DisHet = derive2 { name="DisHet"; version="1.0.0"; sha256="056jcs1qpiyadnmlzd0cj4kp0qzkichxi0pdnxypyq1fsqnpvan3"; depends=[gtools matrixStats]; }; - DisImpact = derive2 { name="DisImpact"; version="0.0.7"; sha256="1cd2v1f43lhvs7kk0vq1vyda336zzxyh0gxrkpg397qpqsfh61si"; depends=[dplyr purrr rlang tidyr tidyselect]; }; + DisImpact = derive2 { name="DisImpact"; version="0.0.12"; sha256="1ba7z0r7s50vbgcff664z9si3l3kihmascy955p6gl8j9d9p2v5k"; depends=[dplyr purrr rlang tidyr tidyselect]; }; DiscreteFDR = derive2 { name="DiscreteFDR"; version="1.3-4"; sha256="0r3z56xcb5als38rhydia482j5xl9kcgamdj6ibd22yi0ya6k4iv"; depends=[Rcpp]; }; DiscreteInverseWeibull = derive2 { name="DiscreteInverseWeibull"; version="1.0.2"; sha256="0vjsvl4m4zccfgizv7mzidbbpzqcm101x448vllcdcrn2xlnkmnq"; depends=[Rsolnp]; }; DiscreteLaplace = derive2 { name="DiscreteLaplace"; version="1.1.1"; sha256="17w4vjvsm7jacvwckjczyah3hglq044r3m6vqdcrg8haz884rav2"; depends=[]; }; DiscreteQvalue = derive2 { name="DiscreteQvalue"; version="1.1"; sha256="1xl6m3sf02v4y26375jn846ixzcxpqim1r6d4j56y8b5c243jg4h"; depends=[]; }; DiscreteWeibull = derive2 { name="DiscreteWeibull"; version="1.1"; sha256="1rg3ax6jryagf5d3h8m44x9wyhr2qff3srfa9zrk6i64p1ahk9lr"; depends=[Rsolnp]; }; DiscriMiner = derive2 { name="DiscriMiner"; version="0.1-29"; sha256="1ii8aa4dwfk991qdnpmkva20wvs5fqcna9030c799ybf11qpdass"; depends=[]; }; - Disequilibrium = derive2 { name="Disequilibrium"; version="1.0"; sha256="0cxwsn57rbwyq6lnr273z5z51nb83w45zg9msw4iqfsyq2z5r5a1"; depends=[Formula numDeriv optimr]; }; + Disequilibrium = derive2 { name="Disequilibrium"; version="1.1"; sha256="1jm5n01ih4rnga13058yh939zp2lvjn5pgb6rrwp5fdlk5kqsgb0"; depends=[Formula numDeriv optimr]; }; DisimForMixed = derive2 { name="DisimForMixed"; version="0.2"; sha256="00mknsalikangr17946877m5fy2jgkgasgl6ng4f2nr44f0q9l6q"; depends=[cluster dplyr]; }; - Distance = derive2 { name="Distance"; version="1.0.0"; sha256="0pgrx2897fb3747vlgzkmr98vfl8wazvqbsbam705sp40mp0gwn7"; depends=[dplyr mrds rlang]; }; + Distance = derive2 { name="Distance"; version="1.0.1"; sha256="1vlsp3dap52hhm70z18k43wf6c3sv222l7w8bz95xzd1vmbnh7qw"; depends=[dplyr mrds rlang]; }; DistatisR = derive2 { name="DistatisR"; version="1.0.1"; sha256="0myzfki8yrk0nhgdgsqs4wjbqhzmkdil1g005hc7p4lz3gi09bfx"; depends=[car prettyGraphs]; }; + Distributacalcul = derive2 { name="Distributacalcul"; version="0.2.2"; sha256="0gsfgfxgbckyp17xr5y3k05pl22bpkajf2x26cwbgnidq9vk6hdp"; depends=[dplyr ggplot2 plotly rlang shiny shinydashboard shinydashboardPlus shinyWidgets statmod tippy]; }; DistributionFitR = derive2 { name="DistributionFitR"; version="0.1"; sha256="0wg43gqsdy1ja0l489k27k9q1w2zq45wzmqnv9wfc734rf8kvlba"; depends=[doParallel foreach stringr]; }; DistributionOptimization = derive2 { name="DistributionOptimization"; version="1.2.6"; sha256="0pp0f7c9szyx426bnnz4fz4vh5q73m8x896z6pqgx04b6v445361"; depends=[AdaptGauss GA ggplot2 pracma]; }; DistributionTest = derive2 { name="DistributionTest"; version="1.1"; sha256="11xhr6yv42s1i4qqlb1pvzm8q2116v10gjlkhl0ml3id6lx27nmj"; depends=[MASS]; }; @@ -1127,9 +1164,10 @@ in with self; { Dpit = derive2 { name="Dpit"; version="1.0"; sha256="02pnc00sk3bwxmxrg27638x0q62r7nsx2nr14zjjc5q880prdisv"; depends=[fitdistrplus gsl moments VGAM]; }; DrBats = derive2 { name="DrBats"; version="0.1.5"; sha256="1iaffippp9kwfrwryf7klmn8nsm2k8pc0bkgpxcsl4vxyy2na3mp"; depends=[ade4 coda MASS Matrix rstan sde]; }; DrImpute = derive2 { name="DrImpute"; version="1.0"; sha256="1adzarrwqb282pqgx2yqswp9rpwd1naxsmar54kddr6qyd6b923b"; depends=[Rcpp RcppArmadillo]; }; - DrInsight = derive2 { name="DrInsight"; version="0.1.1"; sha256="02lqf6bwbgcgyg5zx16nvnzpagmcmbsngnhmyv47256vsd9vppjd"; depends=[igraph qusage]; }; - DriftBurstHypothesis = derive2 { name="DriftBurstHypothesis"; version="0.4.0"; sha256="0cmjysy4g0l9ddadc9g1jl280y999b956saz9v99lg1a3sm4gq9c"; depends=[Rcpp RcppArmadillo xts zoo]; }; + DrInsight = derive2 { name="DrInsight"; version="0.1.2"; sha256="1zz9i4aj0ijqfgp30wv0bvrgx2n003dysqg0pm13f7hni27819ff"; depends=[igraph qusage]; }; + DriftBurstHypothesis = derive2 { name="DriftBurstHypothesis"; version="0.4.0.1"; sha256="1pmsbv1rl79s520nxj536m8gf7xyfjskj8r88rxmxscbgp8c1xz2"; depends=[Rcpp RcppArmadillo xts zoo]; }; DrillR = derive2 { name="DrillR"; version="0.1"; sha256="0n7pim5kk0wfdjcc67v4vvdb7wyhn5bcgi2a12nbyfyydss7pk1g"; depends=[httr]; }; + DriveML = derive2 { name="DriveML"; version="0.1.0"; sha256="0ikhbdgshx51fk629yhwhrdwiqg40qa7rsljb5ihax02cg0cv796"; depends=[caTools data_table ggplot2 iml mlr ParamHelpers rmarkdown sampling SmartEDA]; }; DrugClust = derive2 { name="DrugClust"; version="0.2"; sha256="0acvjqwzkbjmy101m501l7fkfxzkp6zflwvn56li5307xv9ggnfg"; depends=[cclust cluster e1071 MESS ROCR]; }; DstarM = derive2 { name="DstarM"; version="0.3.0"; sha256="16vcv21dgnymhsy9j5x5pblnipf4hdyscajx6pr8kl6i95hs3hmj"; depends=[DEoptim ggplot2 Rcpp RcppArmadillo rtdists RWiener]; }; DtD = derive2 { name="DtD"; version="0.2.2"; sha256="1czspjdxjhbfk2df7wk0x3d1ilwrjqw4s4gdc4hq0gjcjqyx0c39"; depends=[checkmate Rcpp RcppArmadillo]; }; @@ -1138,15 +1176,19 @@ in with self; { Dykstra = derive2 { name="Dykstra"; version="1.0-0"; sha256="1rc1409ky0ysqr3ccq28yhbs94m6d0z2dfa66k4c7irxjvbagwz6"; depends=[]; }; DynClust = derive2 { name="DynClust"; version="3.13"; sha256="020zl2yljp47r03rcbzrbdmwk482xx27awwzv4kdrbchbzwhxqgm"; depends=[]; }; DynNom = derive2 { name="DynNom"; version="5.0.1"; sha256="1ahs93mks2z423sxk4wjgivdz4ggvwm87dha0aan4fg4jarai98s"; depends=[BBmisc compare dplyr ggplot2 magrittr plotly prediction rms shiny stargazer survival]; }; - DynTxRegime = derive2 { name="DynTxRegime"; version="4.3"; sha256="1la4y560rcs163cqmvpwsb1n70n6714kprdxpnkd849caaa93zir"; depends=[dfoptim kernlab modelObj rgenoud]; }; + DynTxRegime = derive2 { name="DynTxRegime"; version="4.7"; sha256="10lsp58jmn9mmpj8yq9adj5a0sa2wd5izgish61g4f643c40rk18"; depends=[dfoptim kernlab modelObj rgenoud]; }; DynaRankR = derive2 { name="DynaRankR"; version="1.1.0"; sha256="1fzicainh1dm016cglm2x6j1i2g5r71vgrj0dnsflbxc5v426sqm"; depends=[dplyr rlang]; }; DynamicDistribution = derive2 { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; }; DynamicGP = derive2 { name="DynamicGP"; version="1.1-6"; sha256="1d3ycx6vcv7rcagaxvfyxgsdigbzigxarm66ypkdasbli1507is3"; depends=[lhs]; }; + DynareR = derive2 { name="DynareR"; version="0.1.1"; sha256="1b7m9z09ps9idj1arza4ka1silrf8rm3gk154px0z3612ls3a3ir"; depends=[knitr]; }; + DysPIA = derive2 { name="DysPIA"; version="1.3"; sha256="0ih8sl89h6xbmmjjsbxcvgp6wqk7f1wqzwkc43k3i5w7fgb0hlpc"; depends=[BiocParallel data_table DysPIAData fastmatch parmigene Rcpp]; }; + DysPIAData = derive2 { name="DysPIAData"; version="0.1.1"; sha256="0iv8hb62gql2n781bgvp4svywgzffqs6lcdcz9966gh6w7x1jfwf"; depends=[]; }; E4tools = derive2 { name="E4tools"; version="0.1.1"; sha256="1kmj1fddybjia9ninhcy75kdmq152zjw7s24chpqr5wsblffr3yx"; depends=[accelerometry anytime BBmisc chron data_table DataCombine doParallel doSNOW foreach ggplot2 hms scales signal]; }; EAinference = derive2 { name="EAinference"; version="0.2.3"; sha256="1kzcfya3z6rf1vqjn72yjymdhrn4dzgmwifh3w6k22cy5jxffzn4"; depends=[hdi limSolve MASS msm mvtnorm Rcpp RcppArmadillo]; }; EBASS = derive2 { name="EBASS"; version="0.1"; sha256="14hxzj06wrc4ihflr7dqk28fsjwbcizr0jy54vhv0mk1y1gd4201"; depends=[]; }; EBEN = derive2 { name="EBEN"; version="4.6"; sha256="0gcf5b2viiq69vs8bd8nhk65g9sbzgg212w7zpnz4y6cv9jkk5zz"; depends=[]; }; - EBPRS = derive2 { name="EBPRS"; version="2.0.3"; sha256="0fr0vqgsj4lc4kgqsvayzbjg2dzxn40y6nbwrhgx3j94ldl632zq"; depends=[ROCR]; }; + EBMAforecast = derive2 { name="EBMAforecast"; version="1.0.0"; sha256="15pw49nj7lq9rfq3sn7p19w28kzx7ypc5dflx0lslaay3fdhria1"; depends=[abind gtools Hmisc plyr Rcpp separationplot]; }; + EBPRS = derive2 { name="EBPRS"; version="2.0.4"; sha256="00rbxmcgaip961g3bkpv6gyjm9bhisfscq51dy00g431rcccjcx4"; depends=[ROCR]; }; EBglmnet = derive2 { name="EBglmnet"; version="4.1"; sha256="0wlscmimj74alcr8k5h1g3alvlpss4g2ah7zkpd42akam3zb4s5z"; depends=[]; }; EBrank = derive2 { name="EBrank"; version="1.0.0"; sha256="1qzhrr3n2zv31mjp224b35324nr9nigzazyfv11j4zhwl1ipf632"; depends=[]; }; ECFsup = derive2 { name="ECFsup"; version="0.1-2"; sha256="0fpcab0gjgsc3sx0plpx068rw3a7kfzs2nyrr477a5m0rcbqf1kh"; depends=[foreach Rcpp RcppArmadillo]; }; @@ -1163,15 +1205,17 @@ in with self; { EDOIF = derive2 { name="EDOIF"; version="0.1.1"; sha256="0lhaajiq01rrvpp2xq2n6ka7pd4xz0spxrf1xv8ljpi2w9kk4p7l"; depends=[boot distr ellipsis ggplot2 igraph simpleboot]; }; EEM = derive2 { name="EEM"; version="1.1.1"; sha256="0w20kakgcpyhfi7fcrss4w67pbaj87hi2scy7g05q3sg2ygac7gj"; depends=[colorRamps ggplot2 R_utils reshape2 sp]; }; EFA_MRFA = derive2 { name="EFA.MRFA"; version="1.0.9"; sha256="0id0dhpq9350ax573i769m83fncrd6rlp4qmwvf9jz1lbksighf0"; depends=[ggplot2 optimbase PCovR psych reshape2 scales]; }; + EFA_dimensions = derive2 { name="EFA.dimensions"; version="0.1.6"; sha256="1372f56h7plijyga851nxjb4j2h3f3wf81qb1zjrqfv7k4imdp25"; depends=[polycor psych]; }; + EFAtools = derive2 { name="EFAtools"; version="0.1.1"; sha256="0xy2kywpwh9y46jn37w1bl09c8i1nxmhrqqkn9ffdx5qyqmcsn4w"; depends=[checkmate cli crayon dplyr future future_apply ggplot2 GPArotation lavaan magrittr psych Rcpp RcppArmadillo stringr tibble viridisLite]; }; EFAutilities = derive2 { name="EFAutilities"; version="2.0.0"; sha256="1vbpz9papk6vvch3kb2qm6nspa4llp4mpck6ky1j8kvkhjzm1za0"; depends=[GPArotation mvtnorm plyr]; }; EFDR = derive2 { name="EFDR"; version="1.0"; sha256="1344ysvrniqn1qv2hx9b9afg9fivccfrj393xy9cqz4j395b6jx0"; depends=[copula doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; }; EFS = derive2 { name="EFS"; version="1.0.3"; sha256="1q8cf8dnxpv5s3lr9145y0wjhak4rz18dzah4xfs5qr4c8nlpl54"; depends=[party pROC randomForest ROCR]; }; - EGAnet = derive2 { name="EGAnet"; version="0.9.3"; sha256="1zz7fkr82nxlxs5vzzj3ihcrfb7l6dix5xazljabiilc849x8cas"; depends=[dplyr glasso igraph lavaan Matrix NetworkToolbox plotly qgraph semPlot]; }; + EGAnet = derive2 { name="EGAnet"; version="0.9.6"; sha256="0ddz6qdvgwj9visdvx3k4wm6qgxn5pvjpd6nyh9h4cz06dd2xji0"; depends=[dplyr glasso igraph lavaan Matrix NetworkToolbox plotly qgraph semPlot]; }; EGRET = derive2 { name="EGRET"; version="3.0.2"; sha256="02c9cakj7szywx0r4rylbdnk63b4npqp2i5x1fhxjy0j5bn0hc2f"; depends=[dataRetrieval fields foreach survival truncnorm]; }; EGRETci = derive2 { name="EGRETci"; version="2.0.3"; sha256="1fzcndah890nfd3fg83jhp5lpwb0xfyrccabgvilkrrm4i4x675m"; depends=[binom EGRET]; }; EHR = derive2 { name="EHR"; version="0.1-3"; sha256="1y12j0sjr1zp3bzha1p31f903js674l6ifjccw0y9718sry8dbv2"; depends=[logistf]; }; - EHRtemporalVariability = derive2 { name="EHRtemporalVariability"; version="1.0.4"; sha256="0l91rc1dv63wxasg3n76xlkan9ni70qrznp9h7lhz5v3jafxqd0m"; depends=[dplyr lubridate plotly RColorBrewer scales shiny viridis xts zoo]; }; - EIAdata = derive2 { name="EIAdata"; version="0.0.5"; sha256="1dg59shsamd5hrf65p3y6wybskfhw875jf9ssv561b241i6dkn3i"; depends=[XML xts zoo]; }; + EHRtemporalVariability = derive2 { name="EHRtemporalVariability"; version="1.1.1"; sha256="15mbc23mqkaj09ilrazqwwijp1dx8m65w9bvfn6kw6c0kdhds39m"; depends=[dplyr lubridate MASS plotly RColorBrewer scales viridis xts zoo]; }; + EIAdata = derive2 { name="EIAdata"; version="0.1.1"; sha256="06xq17x3zdk5q9zjvw3lxvayyggnz4ck4wpzzpsdd3s6j1b0fmhz"; depends=[XML xts zoo]; }; EILA = derive2 { name="EILA"; version="0.1-2"; sha256="0wxl9k4fa0f7jadw3lvn97iwy7n2d02m8wvm9slnhr2n8r8sx3hb"; depends=[class quantreg]; }; EIX = derive2 { name="EIX"; version="1.1"; sha256="0mz7q35w304mm412x6jqlr65ji7xfkb293iwrqgifgi2pc6f77ny"; depends=[DALEX data_table ggiraphExtra ggplot2 ggrepel iBreakDown MASS Matrix purrr scales tidyr xgboost]; }; EKMCMC = derive2 { name="EKMCMC"; version="0.1.0"; sha256="0sfj6w8780fik0ar9bg8zrxkj10wqagvwrngd58g50fc0z4lhr53"; depends=[numDeriv]; }; @@ -1188,45 +1232,45 @@ in with self; { EMC = derive2 { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[MASS mvtnorm]; }; EMCluster = derive2 { name="EMCluster"; version="0.2-12"; sha256="03s828pczfll5fkwa0w6n4m4wb75paj6x0cxgg9r4qmw8w4ag464"; depends=[MASS Matrix]; }; EMD = derive2 { name="EMD"; version="1.5.8"; sha256="0bvwx5ry41cpj646v93vm50c6qb3m5d7mda9q7znmcr4sdf521j5"; depends=[fields locfit]; }; - EML = derive2 { name="EML"; version="2.0.2"; sha256="05hkm8kf17294by7jhvhbq0cqbpg042xkc5cgx9kzrgld8hxrwqm"; depends=[digest dplyr emld jqr jsonlite rmarkdown uuid xml2]; }; + EML = derive2 { name="EML"; version="2.0.3"; sha256="0scqyblnz9h0313wr6yq726gpmqx9mvklc4ckz6h6ksy81f82kjp"; depends=[digest dplyr emld jqr jsonlite rmarkdown uuid xml2]; }; EMMAgeo = derive2 { name="EMMAgeo"; version="0.9.7"; sha256="1wz4zw45xfqbk589cpd188j7619h2ar2czfkisil9x8ksijfixls"; depends=[caTools GPArotation limSolve matrixStats shiny]; }; - EMMIXcskew = derive2 { name="EMMIXcskew"; version="0.9-5"; sha256="1ys5kvns6jlw2lk9m6xcy71wx1d581cmphiaxnp3hsqimc8wz7hq"; depends=[MASS mnormt rgl]; }; EMMIXgene = derive2 { name="EMMIXgene"; version="0.1.3"; sha256="0a5q78s9y6ba1641lrv87kglg39x9wbk5xg7ihzbpl4adrb5sz4f"; depends=[BH ggplot2 mclust Rcpp RcppArmadillo reshape scales]; }; EMMIXmfa = derive2 { name="EMMIXmfa"; version="2.0.11"; sha256="06lfmpw908chhzx512anqacixvvx3y02wm1n4wmpb890rd85n11r"; depends=[]; }; - EMMIXskew = derive2 { name="EMMIXskew"; version="1.0.3"; sha256="05y1ivbzbsfab90925l3ahzd3b8y5kjfk3f0p2s9s3sfyxphqah7"; depends=[KernSmooth lattice mvtnorm]; }; EMMLi = derive2 { name="EMMLi"; version="0.0.3"; sha256="1b36kyzvrdljmkysggv8jyaip78pj32ms0xhj2y568hd419lkh2p"; depends=[]; }; EMMREML = derive2 { name="EMMREML"; version="3.1"; sha256="0qwj4jlfhppjxwcjldh49b6idnagazrxybaid3k2c269wvxwvddq"; depends=[Matrix]; }; EMP = derive2 { name="EMP"; version="2.0.5"; sha256="0piagbxk8siagmvzqv2bh12g1y0hy3c0vkxpddlmp7gm3i304rpi"; depends=[ROCR]; }; - EMSC = derive2 { name="EMSC"; version="0.9.1"; sha256="1njqd9ns9d47zpxy5y6xcxhyd3ly5hr3w6q7m5qr2svk9gz1kl50"; depends=[pracma]; }; + EMSC = derive2 { name="EMSC"; version="0.9.2"; sha256="0qdm0g0bwln2ykqvzvxpmv1h9bgqmb1ws0bccjl4f5ni5v295xjn"; depends=[pracma]; }; EMSNM = derive2 { name="EMSNM"; version="1.0"; sha256="0rhaadzhq9jfpnwxfqcsb3yz96rqlwkm165k5n5jxzwxpg1rg2n0"; depends=[]; }; + EMSS = derive2 { name="EMSS"; version="1.0.1"; sha256="0b2hl3vvdd1lwqdx415jp25k9993nnzbz45zxx0128vvqcr743hr"; depends=[mvtnorm sampleSelection]; }; EMSaov = derive2 { name="EMSaov"; version="2.3"; sha256="1hpvwimhkl7za5s8j9n4a8883vy89jrxrhlh0k3cfprnndh4zz05"; depends=[shiny]; }; EMT = derive2 { name="EMT"; version="1.1"; sha256="0m3av1x3jcp3hxnzrfb128kch9gy2zlr6wpy96c5c8kgbngndmph"; depends=[]; }; EMVS = derive2 { name="EMVS"; version="1.1"; sha256="0pxf2vy3ab5d5zbq089fl27x01yyhh7nyp3g1w4xnifwnm55lx9w"; depends=[Rcpp RcppArmadillo]; }; EMbC = derive2 { name="EMbC"; version="2.0.3"; sha256="0ns6jmshblf00n4harhls03q9c6h1wvgvjzn8jvr3kf4gm2iz2jd"; depends=[maptools mnormt RColorBrewer Rcpp RcppArmadillo sp]; }; + ENMTools = derive2 { name="ENMTools"; version="1.0"; sha256="1zrykjcwh0qnqfkvzi72jq0mygbpph4mvqil0v6j98d9qwlm4avd"; depends=[dismo ENMeval ggplot2 ggpubr gridExtra knitr lhs magrittr raster rgdal rgeos sp spatstat]; }; ENMeval = derive2 { name="ENMeval"; version="0.3.0"; sha256="0q5s8nxig8kbr0cblfmf3k20ri19fjs770a0fnzsk0kwlac414hw"; depends=[dismo doParallel foreach maxnet raster]; }; - ENiRG = derive2 { name="ENiRG"; version="1.0.1"; sha256="0yjy7g0pia4g18h7mawkxn77dnnqcajnbml21rrv63qwlr347355"; depends=[ade4 fgui gdata miniGUI raster rgrass7 sp]; }; - ENmisc = derive2 { name="ENmisc"; version="1.2-7"; sha256="07rix4nbwx3a4p2fif4wxbm0nh0qr7wbs7nfx2fblafxfzhh6jc7"; depends=[Hmisc RColorBrewer vcd]; }; + EPGMr = derive2 { name="EPGMr"; version="1.0.0"; sha256="1ii4lccv4hyydy3sd5l7c22pgx27x3mdml20sfbdj85pmpyab6q9"; depends=[]; }; EPT = derive2 { name="EPT"; version="0.7.5"; sha256="1llypf8600mk62cqxnwv5fds8ypfx5is2qkpbp4bh70l3s3lvj31"; depends=[]; }; + EPX = derive2 { name="EPX"; version="1.0.2"; sha256="0wsyh26n5gjgn7csdxcf4lx70hi58zy8qy8d3m1dvn4y62achksd"; depends=[doParallel doRNG foreach nnet randomForest rngtools]; }; EQL = derive2 { name="EQL"; version="1.0-1"; sha256="0pa33h0f30l352m6ix296l55lvqxdaib666x2dwy9zx0lmk23w8m"; depends=[lattice ttutils]; }; EQUIVNONINF = derive2 { name="EQUIVNONINF"; version="1.0"; sha256="103wrry0cmikprihmgx8y4kk1pnbjis7rs1xw13w14v902xkr2rq"; depends=[BiasedUrn]; }; + ER = derive2 { name="ER"; version="1.0.0"; sha256="0lblgass55ypy61wf8xra3cxzr77301dyqhbnzh1mk76m9hflvzf"; depends=[ggplot2 glmnet gridExtra pls plsVarSel scales]; }; ERP = derive2 { name="ERP"; version="2.2"; sha256="17i04rgfj9crnvpi7mf2spwmaw9jgw4kn5fx6x9xbl9cvwwx6q4k"; depends=[corpcor fdrtool irlba mnormt pacman]; }; - ERSA = derive2 { name="ERSA"; version="0.1.1"; sha256="1b76rfjndw7s0z4qb6rc2s95z0hr9xn4d5qaja9bd721r0g5862k"; depends=[broom car combinat dplyr ggplot2 leaps purrr RColorBrewer shiny tidyr]; }; ES = derive2 { name="ES"; version="1.0"; sha256="1rapwf6kryr6allzbjk6wmxpj9idd3xlnh87rwbh6196xb7rp8lv"; depends=[]; }; ESEA = derive2 { name="ESEA"; version="1.0"; sha256="06r5lki32mxkznj6yxvlz0ikqcxm3jbaralv4qp9xrw6dy6yyg27"; depends=[igraph parmigene XML]; }; ESG = derive2 { name="ESG"; version="0.1"; sha256="1jw6239asv6lwxrz5v0r5pzg6v500bqxg8361sh4jj67rsrc7g9m"; depends=[]; }; - ESGtoolkit = derive2 { name="ESGtoolkit"; version="0.1"; sha256="0r09arhsvamdyahini5yhgc43msdxwvn45l57xbfszahsnr3b3aq"; depends=[CDVine ggplot2 gridExtra Rcpp reshape2 ycinterextra]; }; + ESGtoolkit = derive2 { name="ESGtoolkit"; version="0.2.0"; sha256="1bzl483lijnxkkxkf32xqf8lxm4436ns1gw8jjyarf19s1acajga"; depends=[CDVine ggplot2 gridExtra Rcpp reshape2 ycinterextra]; }; ESTER = derive2 { name="ESTER"; version="0.2.0"; sha256="1jiyqq5hgqc754r434sik9jnlpw66xz56cjdf5ig95qkffzsg224"; depends=[brms cowplot doParallel dplyr foreach ggplot2 lme4 magrittr rlang tidyr]; }; ETAS = derive2 { name="ETAS"; version="0.4.6"; sha256="02xknf7acpha4y2mwn9q974dr2d75nw48wx28i7gprqc7hf6rcsw"; depends=[fields goftest lattice maps Rcpp spatstat]; }; ETC = derive2 { name="ETC"; version="1.3"; sha256="1nvb9n0my7h1kq996mk91canxi6vxy3mzhrshrvm13ixvl48lkkh"; depends=[mvtnorm]; }; - ETLUtils = derive2 { name="ETLUtils"; version="1.4.1"; sha256="07wqrg7mnxmbdf2ibxj5kppl4sd3l608yfhbbsngkhpsrm203qva"; depends=[bit ff]; }; - EValue = derive2 { name="EValue"; version="2.0.0"; sha256="1dgvkmcjzgxhdarahsf8l5jrhizp1zm3qw3zx1i6fihy6z580bzk"; depends=[devtools ggplot2 metafor msm]; }; + ETLUtils = derive2 { name="ETLUtils"; version="1.5"; sha256="0s0q4f3wzpdd87l3pnzysa8aq7zgz29589xnm65a6xfy9znbpzs3"; depends=[bit ff]; }; + EValue = derive2 { name="EValue"; version="3.0.0"; sha256="0kaky3hs6wkxbkyz4ry3qwjr1rpna0m56jd6skic91b57ipfbzsq"; depends=[devtools ggplot2 metafor msm]; }; EW = derive2 { name="EW"; version="1.1"; sha256="0wc3v9qisiikvlp28xhlgsxb92fhkm6vslia6d0vpihyai0p1h1g"; depends=[]; }; EWGoF = derive2 { name="EWGoF"; version="2.2.2"; sha256="19gd9grjjdv6hilqj41g5qhz7m0ga40q88clwggbp5f0f1yd5sym"; depends=[Rcpp]; }; EWOC2 = derive2 { name="EWOC2"; version="1.0"; sha256="1x3l332pmh69kl0c1rka264mi69avdm938mzd79ck4y3qcgn07vr"; depends=[MASS rjags]; }; EWS = derive2 { name="EWS"; version="0.1.0"; sha256="04bsl0s690k2wm7jnvgihj5r1fd1r3s2547j1sgl0zm8yvia2l8x"; depends=[numDeriv]; }; EXRQ = derive2 { name="EXRQ"; version="1.0"; sha256="1iqsr52sl2j5q03122a7rsp6n6a2bkysk2r908c89l36gk4sj2i5"; depends=[mnormt quantreg]; }; EZtune = derive2 { name="EZtune"; version="2.0.0"; sha256="1arrd9zkssb8ixx7r4nxwayksz1mk7jkvlcbm264pv9ya6kh3yrh"; depends=[ada e1071 GA gbm optimx rpart]; }; - Eagle = derive2 { name="Eagle"; version="2.2"; sha256="04r2ii4wdxwmx82qd2csiiy6kjim6zmjnp0851qhz9iry84f0g5s"; depends=[data_table ggplot2 ggthemes matrixcalc mmap R_utils Rcpp RcppEigen shiny shinyBS shinyFiles shinyjs shinythemes]; }; + Eagle = derive2 { name="Eagle"; version="2.3"; sha256="0rkj1d2qwcyz13cl3zxb1kd9l38ckqx69bhn92kvjpxfc0h5xwis"; depends=[data_table ggplot2 ggthemes matrixcalc mmap R_utils Rcpp RcppEigen shiny shinyBS shinyFiles shinyjs shinythemes]; }; EasyABC = derive2 { name="EasyABC"; version="1.5"; sha256="17qv6y8sf2iwwqcv5wfg6sii259gv5jyr72dnfpir2bw78wb3mqx"; depends=[abc lhs MASS mnormt pls tensorA]; }; EasyHTMLReport = derive2 { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc ggplot2 knitr markdown reshape2 scales xtable]; }; EasyMARK = derive2 { name="EasyMARK"; version="1.0"; sha256="10slkblbyxq98c3sxgs194dnkx996khfcpxj6jhz355dp35z7c9d"; depends=[coda doParallel foreach MASS random rjags stringr]; }; @@ -1235,7 +1279,7 @@ in with self; { Ecdat = derive2 { name="Ecdat"; version="0.3-7"; sha256="0isaysjagpx10fq47xs57ywr5jidi62g18zjv5a1jd3c0wswxbkv"; depends=[Ecfun]; }; Ecfun = derive2 { name="Ecfun"; version="0.2-2"; sha256="0gal91rhyrgpdxalnsy9pn7s0pj444zscv1m7pdgfzlnqcmf1vlf"; depends=[BMA fda gdata jpeg MASS mvtnorm RCurl stringi TeachingDemos tis XML xml2]; }; EcoDiet = derive2 { name="EcoDiet"; version="1.0.0"; sha256="19x2ypmsw6jnq1s0nqk3pdkwi5g3g92r6fgxrxlnyvd0jqi9l8b3"; depends=[coda ggplot2 rjags]; }; - EcoGenetics = derive2 { name="EcoGenetics"; version="1.2.1-5"; sha256="1953q374msvdw91m2nagxkwh5r9gnq5qss6l6mf34hayq3kwm8s9"; depends=[d3heatmap doParallel edgebundleR foreach ggplot2 htmlwidgets igraph jsonlite magrittr networkD3 party pheatmap plotly raster reshape2 rgdal rkt SoDA sp]; }; + EcoGenetics = derive2 { name="EcoGenetics"; version="1.2.1-6"; sha256="15lj6l29lwhk89mbmh5hqshg7yf0kgjlrc07b9x56w8382sg849l"; depends=[doParallel edgebundleR foreach ggplot2 htmlwidgets igraph jsonlite magrittr networkD3 party pheatmap plotly raster reshape2 rgdal rkt SoDA sp]; }; EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12.1"; sha256="075kgy6cxppkclk6nj5xs1f5yv9w8cpr09xwhf2101a6wswknb88"; depends=[DEoptim operators topmodel XML]; }; EcoIndR = derive2 { name="EcoIndR"; version="1.6"; sha256="1pichrwny5hyb19919ldbgkdxp1s6vs03yw0x43ww13ldi314zbn"; depends=[rgeos]; }; EcoNetGen = derive2 { name="EcoNetGen"; version="0.2.3"; sha256="05j8m9vzkwlsw1h69s5myhbg85vyhqdxcl9r5mdwsrk9f58wajmz"; depends=[ggplot2 igraph]; }; @@ -1249,7 +1293,7 @@ in with self; { EffectLiteR = derive2 { name="EffectLiteR"; version="0.4-4"; sha256="17mhp4acj0myr2b54hgbb3wi5j6a6q999nqr9lwcbx3plyrwlljl"; depends=[car foreign ggplot2 lavaan lavaan_survey nnet shiny survey]; }; EffectStars = derive2 { name="EffectStars"; version="1.9-1"; sha256="131w5bdc615gaa2czi4wyc2f96jcg24ahcmggajrvyhxmi6rag5x"; depends=[VGAM]; }; EffectStars2 = derive2 { name="EffectStars2"; version="0.1-3"; sha256="0yh4krqjh1jb7gjxb9z4f5bzarps0g9jfqbbva782a881dhcdl1x"; depends=[miscTools VGAM]; }; - EffectTreat = derive2 { name="EffectTreat"; version="1.0"; sha256="1dvhqp3psjllzbv82xcxz3qxni0yv83yc16598185s42zvm6582z"; depends=[]; }; + EffectTreat = derive2 { name="EffectTreat"; version="1.1"; sha256="1kw1vq9y1q3xyiqsk855wjn9jqkzdh6h4xklbl9kvbqsvvhhsgkz"; depends=[]; }; EffectsRelBaseline = derive2 { name="EffectsRelBaseline"; version="0.5"; sha256="1dsnakcrgmlx44599ii92wvhxbxrh0hij59709wsskx1x1152zvh"; depends=[]; }; EfficientMaxEigenpair = derive2 { name="EfficientMaxEigenpair"; version="0.1.4"; sha256="1s0i9a2vk2g4f5gadsvzjfkw91hcjsrbyjg2vgnj1v17xrwgp40w"; depends=[]; }; EleChemr = derive2 { name="EleChemr"; version="1.1.0"; sha256="109dv7ayg5nm6zjd70dp8h5qqwrijikymzgb41dl8vx4pqhv43v3"; depends=[ggplot2]; }; @@ -1272,20 +1316,20 @@ in with self; { EntropyEstimation = derive2 { name="EntropyEstimation"; version="1.2"; sha256="13kb83lfpkw6yq687j0ci23yn5c9dqjibybyyaplk6jixy08lrvy"; depends=[]; }; EntropyExplorer = derive2 { name="EntropyExplorer"; version="1.1"; sha256="02ljnq9ayxg4lrrnb6nlxr1k5ki8dd5i8hjb9fvvb19hwr2id5h4"; depends=[]; }; EntropyMCMC = derive2 { name="EntropyMCMC"; version="1.0.4"; sha256="065djml9dmn5ahbgaljnshvhziwg61xciq6fzh76449x3wy6bg65"; depends=[mixtools RANN]; }; - EnvCpt = derive2 { name="EnvCpt"; version="1.1.1"; sha256="10j0hsy2ff1zj6bb03cngrw19ynyz65rcpxyk6vpqdqcdkpf3zf9"; depends=[changepoint MASS zoo]; }; + EnvCpt = derive2 { name="EnvCpt"; version="1.1.2"; sha256="1him08xs05zrifvhkckljgrskrj777dssv5vs8v4hq8apgifm8sa"; depends=[changepoint MASS zoo]; }; EnvNicheR = derive2 { name="EnvNicheR"; version="1.4"; sha256="0hxx9wmzlw0clvdgdsy8msc78nvm81j3naxr57i7lqqa360sjy3a"; depends=[IDPmisc]; }; EnvStats = derive2 { name="EnvStats"; version="2.3.1"; sha256="0ang2s222znrvzvidyvj2sa2bqx95bxicff64p6w2a7z88mx8lyp"; depends=[ggplot2 MASS nortest]; }; EnviroPRA = derive2 { name="EnviroPRA"; version="1.0"; sha256="0yirh3vy7wap0qmm3kvjz9y68gcvp9i8qshv80wh8aijxwklpr8n"; depends=[fitdistrplus kSamples MASS truncdist]; }; EnviroStat = derive2 { name="EnviroStat"; version="0.4-2"; sha256="0ckax6vkx0vwczn21nm1dr8skvpm59xs3dgsa5bs54a3xhn5z9hs"; depends=[MASS]; }; - Epi = derive2 { name="Epi"; version="2.40"; sha256="046y10vwks5y84pzccmrn6d4pd6qz70imvp1hw5ywp8fnwzfh4g5"; depends=[cmprsk data_table etm MASS Matrix mgcv numDeriv plyr survival zoo]; }; + Epi = derive2 { name="Epi"; version="2.41"; sha256="09miba6zk63bwc79n3030kgzlvy3whkq968pgqyghxnsjfh5ckp5"; depends=[cmprsk data_table etm MASS Matrix mgcv numDeriv plyr survival zoo]; }; EpiContactTrace = derive2 { name="EpiContactTrace"; version="0.13.0"; sha256="1m9gawd0fv0pl9q8n9rnid8shdy88kxw4hr5fvvf9ifngf8ffmqa"; depends=[]; }; EpiCurve = derive2 { name="EpiCurve"; version="2.3-1"; sha256="0yi49mdij8gx90kbppxdkm0xzaxhr9i7bpgis64vbx4bpy4ynxbb"; depends=[dplyr ggplot2 ISOweek RColorBrewer scales tibble timeDate]; }; EpiDynamics = derive2 { name="EpiDynamics"; version="0.3.1"; sha256="0m6yay3r7dqih19f76wxwgq6dh9p1zmp5d9ilj9nd262q61jcy53"; depends=[deSolve ggplot2 reshape2]; }; - EpiEstim = derive2 { name="EpiEstim"; version="2.2-1"; sha256="1a21mskjvyz9qdvl3kkf0p15zn1nx1a49c5djp1lacrn6h7g8k9p"; depends=[coarseDataTools coda fitdistrplus ggplot2 gridExtra incidence reshape2 scales]; }; - EpiILM = derive2 { name="EpiILM"; version="1.5"; sha256="0726sb6jisicphchzbcswh8nkgx12cb6sfgwa4ll35nm3vrb5xb1"; depends=[adaptMCMC coda LaplacesDemon]; }; + EpiEstim = derive2 { name="EpiEstim"; version="2.2-3"; sha256="0rg2ys9plqm9crz4h9xh8k045zwnsdwxsyp4k5bpdkdnrh8nvw08"; depends=[coarseDataTools coda fitdistrplus ggplot2 gridExtra incidence reshape2 scales]; }; + EpiILM = derive2 { name="EpiILM"; version="1.5.1"; sha256="15676j8w7xsh1bdr3ggi8zdf6hf072bzmiymn050jv35l80azqx8"; depends=[adaptMCMC coda LaplacesDemon]; }; EpiILMCT = derive2 { name="EpiILMCT"; version="1.1.6"; sha256="0qhpmh28zmgqnsyfxgv06g2slix12nn2pglgpvagx2q40rs4fann"; depends=[coda igraph]; }; - EpiModel = derive2 { name="EpiModel"; version="1.7.5"; sha256="0w7r26pcsw785rhd17j0sp840xa4mpsfiq04vk36afv27mgfx6wy"; depends=[ape deSolve doParallel ergm foreach ggplot2 lazyeval network networkDynamic RColorBrewer tergm]; }; - EpiReport = derive2 { name="EpiReport"; version="0.1.0"; sha256="1bfh7nrwmplsk7whvmsf0wxg795xrwvarxw974v58mjb282yp87s"; depends=[dplyr extrafont flextable ggplot2 knitr officer png rmarkdown tidyr zoo]; }; + EpiModel = derive2 { name="EpiModel"; version="2.0.2"; sha256="18r66y267si0zv76k7y93mph5290p8xmlanwg8q8fz6y4rwv5sfa"; depends=[ape deSolve doParallel ergm foreach ggplot2 lazyeval network networkDynamic RColorBrewer tergm tergmLite]; }; + EpiReport = derive2 { name="EpiReport"; version="0.1.1"; sha256="19pl75ld3s3dzg3z54f65j39di5hw3q4jgasj3cw87hjyqgzgbaq"; depends=[dplyr extrafont flextable ggplot2 knitr officer png rmarkdown tidyr zoo]; }; EpiSignalDetection = derive2 { name="EpiSignalDetection"; version="0.1.1"; sha256="04bagnx9fs0r3167hmwgc389fl5hq7l4j6kdjjmi360vcaimx9qi"; depends=[dplyr DT ggplot2 ISOweek knitr pander rmarkdown shiny surveillance]; }; EpiStats = derive2 { name="EpiStats"; version="1.4-1"; sha256="1i9ymqf0p8wplbmbq4j0ixprjvg22l4z05imxhfj087p3p2sqq8w"; depends=[dplyr epiR]; }; EpistemicGameTheory = derive2 { name="EpistemicGameTheory"; version="0.1.2"; sha256="0b2gnrvhlsw85qv63ib32pj55l7w63wgvbrj5rb209g6h46fby8m"; depends=[lpSolve]; }; @@ -1296,16 +1340,18 @@ in with self; { EstMix = derive2 { name="EstMix"; version="1.0.1"; sha256="13zwhxm0qm83c8k5k4slvq2snkmbq1zz3i5cqvxxwhvkb4b8aja4"; depends=[PSCBS Rcpp RcppArmadillo]; }; EstSimPDMP = derive2 { name="EstSimPDMP"; version="1.2"; sha256="05gp0gdix4d98111sky8y88p33qr5w4vffkp6mg9klggn37kdj8j"; depends=[]; }; EstimateGroupNetwork = derive2 { name="EstimateGroupNetwork"; version="0.2.2"; sha256="17sx309w4jjhgmpmk27gpj3d5pbra72vxdif4als0jhyd59kk0jw"; depends=[dplyr ggplot2 igraph qgraph]; }; - EstimationTools = derive2 { name="EstimationTools"; version="1.2.1"; sha256="0m3q71ag73ph52a6nyvwh6i33d2c42dbbx7vww9h7pqkc09z1j7a"; depends=[BBmisc boot DEoptim numDeriv Rdpack]; }; + EstimationTools = derive2 { name="EstimationTools"; version="2.0.0"; sha256="09d0rnlm925my7m3kc3b7dzxvq7zqbyfk3p2m0hr4r6d8s0cwab9"; depends=[BBmisc boot DEoptim foreign numDeriv RCurl Rdpack stringr survival]; }; EthSEQ = derive2 { name="EthSEQ"; version="2.1.3"; sha256="168wxxb1cyrfr8s4f9gxqj64dmc4i24g5k6yys3xay9c932gf98y"; depends=[data_table gdsfmt geometry MASS plot3D SNPRelate]; }; EurosarcBayes = derive2 { name="EurosarcBayes"; version="1.1"; sha256="12311s6ibw9q6kykhh689r93r7mwjhwrhkzdpc75grvw6ilgjmpm"; depends=[clinfun data_table plyr shiny VGAM]; }; EvCombR = derive2 { name="EvCombR"; version="0.1-2"; sha256="1f5idjaza91npf64hvcnpgnr72mpb7y6kf91dp57xy9m14k7jx5g"; depends=[]; }; EvalEst = derive2 { name="EvalEst"; version="2015.4-2"; sha256="1jkis39iz3zvi5yfd0arvw7bym6naq45f5cravywg8c37n9v967x"; depends=[dse setRNG tfplot tframe]; }; + EvaluateCore = derive2 { name="EvaluateCore"; version="0.1.1"; sha256="03y2sbpca11gjn94kn03y5ahamhhnwfisnpaxi23k124wq09dgch"; depends=[agricolae car cluster dplyr entropy ggcorrplot ggplot2 gridExtra kSamples psych Rdpack reshape2 vegan]; }; EvaluationMeasures = derive2 { name="EvaluationMeasures"; version="1.1.0"; sha256="0b65y4rb650hhlgc18z0sm0danrrawqkazzdl9krl877djrgx87g"; depends=[]; }; - Evapotranspiration = derive2 { name="Evapotranspiration"; version="1.14"; sha256="1v681m7zyhpydyx1mbkk4iwxkkf0mx1317c3z2v465zg9bssp3c7"; depends=[zoo]; }; + Evapotranspiration = derive2 { name="Evapotranspiration"; version="1.15"; sha256="1hvvlc8qwgal4lhlccf4dk817xgpyyiqzzlzk7w3ydnczr8pk4bk"; depends=[zoo]; }; EventDetectGUI = derive2 { name="EventDetectGUI"; version="0.3.0"; sha256="02gwgbp692cfmf933jg1f7h4gghhc1v2cswz7rpcazm8h39mc4wh"; depends=[DT EventDetectR ggplot2 plotly shiny shinyBS shinydashboard shinyjs XML]; }; EventDetectR = derive2 { name="EventDetectR"; version="0.3.4"; sha256="1zyv9k0l1s5djvp5hbbrlz96gw3126n43nm2iv6xsil90k2fp827"; depends=[forecast ggplot2 gridExtra imputeTS neuralnet]; }; EventStudy = derive2 { name="EventStudy"; version="0.36"; sha256="0pd7qbpj4agaqc57lianqinnardyh929nr8ammmpal191v2i7hmw"; depends=[curl data_table dplyr ggplot2 httr jsonlite magrittr miniUI openxlsx purrr RColorBrewer readr rlang rstudioapi scales shiny stringr testthat tidyquant tidyr]; }; + EviewsR = derive2 { name="EviewsR"; version="0.1.0"; sha256="1chg3g1jsdflgby2bksqw2nf27xin4nayqigxkji4zwbspp6m8ai"; depends=[knitr]; }; EvoRAG = derive2 { name="EvoRAG"; version="2.0"; sha256="0gb269mpl2hbx1cqakv3qicpyrlfb4k8a3a7whhg90masbgmh8f6"; depends=[]; }; EvolutionaryGames = derive2 { name="EvolutionaryGames"; version="0.1.0"; sha256="1v6xpxk4kbjbmv8vh517rd76gyrd9znpxqdh4jqz8lvdpnpla4wv"; depends=[deSolve geometry ggplot2 interp MASS reshape2 rgl]; }; Evomorph = derive2 { name="Evomorph"; version="0.9"; sha256="1br2fyggwz2mxpic8sk384xq1lpbpv0j5gf6xyzhkn2n7kfpf6d5"; depends=[geomorph ggplot2 reshape2 stringr]; }; @@ -1314,6 +1360,7 @@ in with self; { Exact = derive2 { name="Exact"; version="2.0"; sha256="142yiz9bz1abgpdqkzgdsz3bp3dwbjlmyg29a62djb8630aicgyn"; depends=[]; }; ExactCIdiff = derive2 { name="ExactCIdiff"; version="1.3"; sha256="1vayq8x7gk1fnr1jrlscg6rb58wncriybw4m1z0glfgzr259103y"; depends=[]; }; ExceedanceTools = derive2 { name="ExceedanceTools"; version="1.2.2"; sha256="084sc6pggfbcyavhfnd5whyigw7dyjhb4cxmxi0kh2jiam5k8v5b"; depends=[SpatialTools splancs]; }; + ExcelFunctionsR = derive2 { name="ExcelFunctionsR"; version="0.1.4"; sha256="1j3vfvfk8lp46zb6fwvq9lafk7r2qrnx4vxyhaih71c0a8g6dz9n"; depends=[lubridate plyr roperators stringr tidyr]; }; ExcessMass = derive2 { name="ExcessMass"; version="1.0"; sha256="1z8l1lja02wxw8l72s3bq6sgjymn5929n123xk6b7ndd52zlfgf5"; depends=[]; }; ExomeDepth = derive2 { name="ExomeDepth"; version="1.1.15"; sha256="1ljswn8bimzhl7dxy7nb2jmwq9v7vpp4y1jynp8djrjpdx9wnaqi"; depends=[aod Biostrings dplyr GenomicAlignments GenomicRanges IRanges magrittr Rsamtools VGAM]; }; ExpDE = derive2 { name="ExpDE"; version="0.1.4"; sha256="0yjsap92dd1sb23fhw69i0ddk3lyj5f4kwp9rvz4k0vxry10hx7g"; depends=[assertthat]; }; @@ -1323,9 +1370,10 @@ in with self; { ExpertChoice = derive2 { name="ExpertChoice"; version="0.2.0"; sha256="1pd4v240ywc4wzh249axxb4kz5dccizc08jdjnaygz35hjdg5hvj"; depends=[DoE_base dplyr far purrr rlist]; }; ExplainPrediction = derive2 { name="ExplainPrediction"; version="1.3.0"; sha256="14m3b9fsrpfpr8avsnhl8b3bzk2xlhwgkwag5iq8bj7bzvv4yck1"; depends=[CORElearn semiArtificial]; }; ExtMallows = derive2 { name="ExtMallows"; version="0.1.0"; sha256="0903jslp74s1vzbklq88y2dm0dgkhd6g77b7aipxam98933k0hzz"; depends=[]; }; - ExtractTrainData = derive2 { name="ExtractTrainData"; version="5.0.3"; sha256="0a47b3zb4igx39jn609ll9s4zwbpid723xncdjxrmamdp8dvv8r6"; depends=[raster rgdal rgeos]; }; + ExtractTrainData = derive2 { name="ExtractTrainData"; version="9.1.5"; sha256="132f43mk2mjsfv9pfhj1371b4vxnqmnj5lf8xvfznf57xjna7wp1"; depends=[raster rgdal rgeos sp]; }; ExtremalDep = derive2 { name="ExtremalDep"; version="0.0.3-3"; sha256="0svl7szscv1blgi2vh4kaqclg95sn871hk650bym2vdkjljy6x2x"; depends=[CompRandFld copula evd fda gtools mvtnorm nloptr numDeriv quadprog rlist sn]; }; ExtremeBounds = derive2 { name="ExtremeBounds"; version="0.1.6"; sha256="12bc4mmkmggvk3kfmz6nq13fa2470z0bx8smnvq9vf1ypdiiw85y"; depends=[Formula]; }; + ExtremeRisks = derive2 { name="ExtremeRisks"; version="0.0.3"; sha256="1ja53780gh4xyid9dd36lc0ikfwr2fd18m1mvsfq069h65b2a8vg"; depends=[copula evd mvtnorm]; }; FABInference = derive2 { name="FABInference"; version="0.1"; sha256="0d11vxxa0mry735n7an8n97wmxyffsj4hirxlysljs941zhkhhw4"; depends=[MASS]; }; FACTMLE = derive2 { name="FACTMLE"; version="1.1"; sha256="0qz2i0hnn84bpps1h8jmfkgp5p59axr0wayj9dvl839radrvpqvy"; depends=[rARPACK]; }; FADA = derive2 { name="FADA"; version="1.3.5"; sha256="0srv3rghbkgyxbcjc1v68c5qgcir1d618skpc8imfmdaz9pnxchn"; depends=[corpcor crossval elasticnet glmnet MASS matrixStats mnormt sda sparseLDA]; }; @@ -1342,15 +1390,15 @@ in with self; { FBN = derive2 { name="FBN"; version="1.5.1"; sha256="0723krsddfi4cy2i3vd6pi483qjxniychnsi9r8nw7dm052nb4sf"; depends=[]; }; FCGR = derive2 { name="FCGR"; version="1.0-0"; sha256="015nnnc9fasx0qjrc3lbxv14rqwyx36xzsw9076grwm5pqahrdsb"; depends=[kerdiest KernSmooth MASS mgcv nlme pspline sfsmisc]; }; FCMapper = derive2 { name="FCMapper"; version="1.1"; sha256="1yjh8rs65nqslvwv7x4rif469zds41s7v3vhq6pca1y17kvj2in1"; depends=[igraph]; }; - FCPS = derive2 { name="FCPS"; version="1.2.0"; sha256="0npgr3vd7f5xa02apzyyxbbvr5h6s57hii8sirp76avc1qz2371m"; depends=[DataVisualizations ggplot2 mclust]; }; - FCSlib = derive2 { name="FCSlib"; version="1.1.0"; sha256="0sxpzcj6lard3xf24pq42iaryc3idccb076y69swckm0ixhrg85w"; depends=[tiff]; }; + FCPS = derive2 { name="FCPS"; version="1.2.3"; sha256="1v7hq2gbimnpn9icgr5y05lfz3ml6433z3dbhzchvwla4qkm1xp1"; depends=[DataVisualizations ggplot2 mclust]; }; + FCSlib = derive2 { name="FCSlib"; version="1.1.1"; sha256="1nr037pg74rwd6i1q1gbhijv3ffjifsjbzcf6hqy3mwy58pflh5d"; depends=[stringr tiff]; }; FD = derive2 { name="FD"; version="1.0-12"; sha256="0xdpciq14i8rh7v6mw174hip64r7mrzhx7gwri3vp9y7a1380sbi"; depends=[ade4 ape geometry vegan]; }; FDRSeg = derive2 { name="FDRSeg"; version="1.0-3"; sha256="0dh6m5vlx664kryh56jzi3zxydjwa5217nhbwn6adp0q5qdh6d8a"; depends=[Rcpp stepR]; }; FDRreg = derive2 { name="FDRreg"; version="0.1"; sha256="17hppvyncbmyqpi7sin9qsrgffrnx8xjcla2ra6y0sqzam1145y4"; depends=[fda mosaic Rcpp RcppArmadillo]; }; FDRsampsize = derive2 { name="FDRsampsize"; version="1.0"; sha256="0g8kawzyi9x5yndvh330wzqw6rvcnprwq56ngd0j6z51hvvw8qhw"; depends=[]; }; FDX = derive2 { name="FDX"; version="1.0.1"; sha256="1za2w2xykbfy2pvxxr9xq2lblk65mxrskx80cdcr00ivzj1jx2bn"; depends=[DiscreteFDR PoissonBinomial pracma Rcpp]; }; - FDboost = derive2 { name="FDboost"; version="0.3-2"; sha256="1ahdq49ijj4j2yykmzbpgrjn0sm09nzmd33k317y157hnf6zyxvs"; depends=[gamboostLSS MASS Matrix mboost mgcv stabs zoo]; }; FENmlm = derive2 { name="FENmlm"; version="2.4.3"; sha256="1a205a4iv54haixanyzx210lzqg7cnryjvqayvkdj1lhmdql4anw"; depends=[Formula MASS numDeriv Rcpp]; }; + FESta = derive2 { name="FESta"; version="1.0.0"; sha256="1kf5iqw8x8079gjaxicrgax5l798l8hxcc5y83l5pqh0ync5bxm6"; depends=[]; }; FEprovideR = derive2 { name="FEprovideR"; version="1.1"; sha256="02hfdk9qhaq4y19p700w2i7qsdp4z2kyww0pr0pijfivkqks0vpi"; depends=[ggplot2 Matrix poibin]; }; FFD = derive2 { name="FFD"; version="1.0-6"; sha256="19yqb45qj54fmjkqfjbcqsx3wz6fk8inrqif9ds93xjkm6aaiqgp"; depends=[R2HTML tkrplot]; }; FField = derive2 { name="FField"; version="0.1.0"; sha256="05q16v2vv64qhbnf2l66dwzmvgzyaq8vxwwdabp534bw7z7zpi8q"; depends=[]; }; @@ -1362,13 +1410,13 @@ in with self; { FIACH = derive2 { name="FIACH"; version="0.1.2"; sha256="151lc5m8pb7l07kxljm32zy5kd7a4zr5vgsgwsx7ywhijh0r0585"; depends=[Rcpp RcppArmadillo RNiftyReg tkrplot]; }; FIT = derive2 { name="FIT"; version="0.0.6"; sha256="1nkjms9cvigc9sjha1krzhd3nmwsfh8pi0f1plf5k8zpb773zzb2"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; FITSio = derive2 { name="FITSio"; version="2.1-0"; sha256="021xmbavigg70m96xw1bvsdasi5yj2wmafgb6xw4b09fmyv9hvjp"; depends=[]; }; - FKF = derive2 { name="FKF"; version="0.1.5"; sha256="1qzf7y3f4xfirjkm795rcxckjbw6sn7xpilhkyvayqm2vyhf7518"; depends=[RUnit]; }; - FKSUM = derive2 { name="FKSUM"; version="0.1.3"; sha256="1zz4hyqlq4517jksgx3jfz9m4gfnp49q272n0m4y9yabsd5fdv3a"; depends=[MASS rARPACK Rcpp RcppArmadillo]; }; + FKF = derive2 { name="FKF"; version="0.1.7"; sha256="1s3qilbkmdfsxcc0vj4yv8jyh8gl9i9rq9f8xb8wiycccpzx119v"; depends=[]; }; + FKSUM = derive2 { name="FKSUM"; version="0.1.4"; sha256="02nicfw0wcprdg0p2p44g740j6bjf6xgzjxcvyfcbcsbr6bpjknx"; depends=[MASS rARPACK Rcpp RcppArmadillo]; }; FLAME = derive2 { name="FLAME"; version="2.0.0"; sha256="067yy0b668pj25a0jscpjb98in22048vxs249a7pa4rs2c1cyai9"; depends=[devtools dplyr glmnet gmp magrittr mice rlang tidyr xgboost]; }; FLLat = derive2 { name="FLLat"; version="1.2-1"; sha256="0306bpwp2az4x4m5sv88hlh7vs0y5isfby7lxrn2gjnk76gg6mw1"; depends=[gplots]; }; FLR = derive2 { name="FLR"; version="1.0"; sha256="0k50vi73qj7sjps0s6b2hq1cmpa4qr2vwkpd2wv2w1hhhrj8lm0n"; depends=[combinat]; }; FLSSS = derive2 { name="FLSSS"; version="8.5.6"; sha256="1c6j54ihc385m1f0r86yb83zqv2myfskq48bh9dcynlnc9crs428"; depends=[Rcpp RcppParallel]; }; - FLightR = derive2 { name="FLightR"; version="0.4.9"; sha256="0rcnkifq6mi1i5xhk6qy2gl3bry269y4isfr8phl3car0yj39lw1"; depends=[bit CircStats circular fields GeoLight ggmap ggplot2 ggsn maptools mgcv nlme raster RcppArmadillo rgdal rgeos sp truncnorm]; }; + FLightR = derive2 { name="FLightR"; version="0.5.0"; sha256="00walvfjf2rr308mv4v3734qad4i1sgv0mwjldgpgjq077h4xw38"; depends=[bit CircStats circular fields GeoLight ggmap ggplot2 ggsn maptools mgcv nlme raster RcppArmadillo rgdal rgeos sp truncnorm]; }; FMAdist = derive2 { name="FMAdist"; version="0.1.0"; sha256="0aa4sw93ia6cp386hrq6x448x4w0p6k198rjaqs474j25gqgxrv0"; depends=[EnvStats extraDistr fitdistrplus MASS quadprog STAR]; }; FMC = derive2 { name="FMC"; version="1.0.0"; sha256="1pfqxx7slgcmw4al7i8hy59f4han6b0b7b5az7yh1mscdnghl9bj"; depends=[minimalRSD]; }; FMCCSD = derive2 { name="FMCCSD"; version="1.0"; sha256="0c50km5ba6biq9p3mycxhy00ij2gr6y5zf3q8ycq0g1mbk8ybfb7"; depends=[numDeriv orthopolynom Rcpp RcppArmadillo splines2]; }; @@ -1378,7 +1426,7 @@ in with self; { FMradio = derive2 { name="FMradio"; version="1.1.1"; sha256="02d5imhagkr2cwgs6r77mbd2jg8k5ga17xp3rwaryykg2k4glacs"; depends=[Biobase expm ggplot2 MASS reshape]; }; FMsmsnReg = derive2 { name="FMsmsnReg"; version="1.0"; sha256="0d58n7lz8d6xgzvyznmhw1byshyiiwk8dc462qr18cl51p0lqnkv"; depends=[mvtnorm]; }; FNN = derive2 { name="FNN"; version="1.1.3"; sha256="0cllqlnynm5yaj4r64mqyyfc8phkb38rwssq8k8ikgfgr4jklxny"; depends=[]; }; - FOCI = derive2 { name="FOCI"; version="0.1.1"; sha256="1q5zchbm7h5jizk5rl8xr31bdx9h88mzf8ih8kdqmsvpk1ckk13f"; depends=[dplyr magrittr proxy RANN]; }; + FOCI = derive2 { name="FOCI"; version="0.1.2"; sha256="0zgzaqiq341n8mdlr90hfxxr32p50l4yq7cs496v77d48xi7nz6v"; depends=[data_table gmp proxy RANN]; }; FPCA2D = derive2 { name="FPCA2D"; version="1.0"; sha256="18bb90ppd9gd8pg9jxfyfkmlsaqk8w25fgaj9fk18ybm2nhsxqm6"; depends=[corpcor]; }; FPCA3D = derive2 { name="FPCA3D"; version="1.0"; sha256="1hrk9caad2s76dx59clxhia45a85khk1y2ii7955f336x55q34a5"; depends=[]; }; FPDclustering = derive2 { name="FPDclustering"; version="1.4.1"; sha256="19n6fx3fyvnlwh8w8bi8ki3wfmvzdlxl557cj3a9y1wmm3fv2drz"; depends=[cluster ExPosition mvtnorm rootSolve ThreeWay]; }; @@ -1386,19 +1434,20 @@ in with self; { FRACTION = derive2 { name="FRACTION"; version="1.0"; sha256="0g25dzsbharsq8bzfka96zccaqppdclax24mz5m080ddg4y8zj49"; depends=[]; }; FRAPO = derive2 { name="FRAPO"; version="0.4-1"; sha256="0mjcrplxr0cyybp5hzzwbq5j03w0f3iiiv1yk7mdqr5gb368dchq"; depends=[cccp Rglpk timeSeries]; }; FRCC = derive2 { name="FRCC"; version="1.0"; sha256="1g1rsdqsvwf7wc16dj16y6r0347j8jsv5l1pxvj1h0579zinaf2b"; depends=[calibrate CCP corpcor MASS]; }; + FREEtree = derive2 { name="FREEtree"; version="0.1.0"; sha256="1i2liqbcg993snj5vq341mmafzhn1yrwljvx4f3kyzy0pa59k6rn"; depends=[glmertree MASS pre WGCNA]; }; FREQ = derive2 { name="FREQ"; version="1.0"; sha256="01nra30pbnqdd63pa87lcws3hnhhzybcjvx2jqyxjghn6khz47j0"; depends=[]; }; FRESA_CAD = derive2 { name="FRESA.CAD"; version="3.1.0"; sha256="1gi637fwfpwbghms96bmfqs7zirjskd9hxiw43s0765h3ypjqwx1"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; FRK = derive2 { name="FRK"; version="0.2.2.1"; sha256="0fjfhkv899v08419109qs1gabnc22h7a5b4z6s6fd1zk1dc4agjn"; depends=[digest dplyr ggplot2 Hmisc Matrix plyr Rcpp sp spacetime sparseinv]; }; - FRegSigCom = derive2 { name="FRegSigCom"; version="0.3.0"; sha256="0w0yhch75wdx6phf5h4radipgpndv5bfxva2pzzd99fkmws4sswn"; depends=[fda Matrix Rcpp RcppEigen]; }; FSA = derive2 { name="FSA"; version="0.8.30"; sha256="0f567dm1fcffjsmm4j8c81q748rl944ia5ll22b2ayvv3qf7v9y7"; depends=[car dplyr dunn_test lmtest plotrix plyr sciplot withr]; }; FSAdata = derive2 { name="FSAdata"; version="0.3.8"; sha256="0i7wkz0baxcf1dv6qvc891b4ja4x65p4qicil472k6a9gcf5d4qm"; depends=[]; }; FSInteract = derive2 { name="FSInteract"; version="0.1.2"; sha256="1aci1398aaz0nrl5jy6yh7xik355wf7pwngrsak4qsi94vdj05iy"; depends=[Matrix Rcpp]; }; + FSK2R = derive2 { name="FSK2R"; version="0.1.1"; sha256="046d47zcig1rs76q32v3p6kc9shhb073659gw5vd585svkvcr4ic"; depends=[dplyr googlesheets purrr R_utils readtext readxl rjson rlang shiny stringr tibble tidyr XML xml2 zip]; }; FSMUMI = derive2 { name="FSMUMI"; version="1.0"; sha256="06ri1zi86cm4arjdlp2pha2bvcc8vz6irvd9n3ja074hv62wxcw4"; depends=[FuzzyR lsa]; }; FSSF = derive2 { name="FSSF"; version="0.1.1"; sha256="024g2rv64yqxmbbwrbkpkrzdfshl0n6jll6axsgsp4q4ia4r9401"; depends=[Rcpp RcppArmadillo]; }; FSTpackage = derive2 { name="FSTpackage"; version="0.1"; sha256="1fjqsl59fg4x9vkbv4b0qmfxlaa2q3rzpl40grv24yg6ixfagmdb"; depends=[CompQuadForm MASS Matrix mvtnorm SKAT]; }; FSelector = derive2 { name="FSelector"; version="0.31"; sha256="1ryqrwz9h7ggxvmxyw4viajlkvd3r7i6ihcfrwsz6axyk5y0qarg"; depends=[digest entropy randomForest RWeka]; }; FSelectorRcpp = derive2 { name="FSelectorRcpp"; version="0.3.3"; sha256="0x0jysqjvplzmcjs223wma9ng2pyd9mcbdgqmgsiifv0wdic07vi"; depends=[BH foreach iterators Rcpp RcppArmadillo testthat]; }; - FSinR = derive2 { name="FSinR"; version="1.0.8"; sha256="07cabw86x07sg3mhpzdfrgw20i2mhnxk21zxbzwv4dgld66g9g08"; depends=[caret class digest dplyr e1071 GA mlbench neuralnet prodlim purrr Rdpack rlang rpart tidyr]; }; + FSinR = derive2 { name="FSinR"; version="2.0.3"; sha256="13p28wn4b5f2q28g083r2qyahqrkw6qp6d4ibsipk4zclcrlpqax"; depends=[caret class digest dplyr e1071 GA mlbench neuralnet prodlim purrr Rdpack rlang rpart tidyr]; }; FTICRMS = derive2 { name="FTICRMS"; version="0.8"; sha256="0kv02mdmwflhqdrkhzb55si5qnqqgdadgyabqc2hwr6iccn7aq8c"; depends=[lattice Matrix]; }; FUNTA = derive2 { name="FUNTA"; version="0.1.0"; sha256="02yxz95s2hs26mfmgwhv5d54yyjz0aczjpnay8b4gpzbpd6aci61"; depends=[]; }; FWDselect = derive2 { name="FWDselect"; version="2.1.0"; sha256="0w0hkmhcz7h1lixk7p3yffbbalgxwh2lv463vqz361k80sri6wz7"; depends=[cvTools mgcv]; }; @@ -1414,12 +1463,12 @@ in with self; { FamEvent = derive2 { name="FamEvent"; version="2.0"; sha256="07xb1k3yxsbwxxg6avw2gvai2qpjjd1imjggr8q6lkgcd8j3yxrb"; depends=[eha kinship2 MASS pracma survival truncnorm]; }; Familias = derive2 { name="Familias"; version="2.4"; sha256="1k6ig2zfkr1a4s3s85ygixmmsrb5m8vqqab8l5ffkspgjvh4dfz2"; depends=[kinship2 paramlink Rsolnp]; }; FarmSelect = derive2 { name="FarmSelect"; version="1.0.2"; sha256="174rzv9k0hdcfdkv7bisy70rip2iy0bnj3qa54i00wqwjdglgjdn"; depends=[fBasics ncvreg Rcpp RcppArmadillo]; }; - FarmTest = derive2 { name="FarmTest"; version="2.0.1"; sha256="1inwbaa4nckny4cwypqs2s2jmzj61vb6dpjyf8fn2mxdy4qjb9zd"; depends=[Rcpp RcppArmadillo]; }; + FarmTest = derive2 { name="FarmTest"; version="2.1.0"; sha256="0vm6mvl8iixm5w3xrzmc685ifypnlhjch4cpqjsvk0pamp5f24dl"; depends=[Rcpp RcppArmadillo]; }; FastBandChol = derive2 { name="FastBandChol"; version="0.1.1"; sha256="1hlgipn792vaylvc0r44clkjcnkns6p241a1fs8sb3gpq81naazk"; depends=[Rcpp RcppArmadillo]; }; FastCUB = derive2 { name="FastCUB"; version="0.0.2"; sha256="04bphkfkkjp7gfnsgar5gcxzmkr437mz6y8mbf015m7f4cvdhzjz"; depends=[CUB Formula]; }; FastGP = derive2 { name="FastGP"; version="1.2"; sha256="120qai1yw3yhwm762zridk78n4qclpivwm9f2hkij4bz851qibqv"; depends=[MASS mvtnorm rbenchmark Rcpp RcppEigen]; }; FastGaSP = derive2 { name="FastGaSP"; version="0.5.1"; sha256="09dymlchc4ij5iwwi2hl7shlqr8610lv7r2qh3sbrh7j5vnr5sc9"; depends=[Rcpp RcppEigen RobustGaSP]; }; - FastHCS = derive2 { name="FastHCS"; version="0.0.6"; sha256="0ds0g2lbzc33is8g8yxfs6hpvl2zdrgi9fqa7c71c3b3fwn9cqlv"; depends=[matrixStats Rcpp RcppEigen robustbase]; }; + FastHCS = derive2 { name="FastHCS"; version="0.0.7"; sha256="0l3fi3siwg2jhsj0jbhgccx8pnwd8h8f4z37g1najb41hw8dwn8d"; depends=[matrixStats Rcpp RcppEigen]; }; FastKM = derive2 { name="FastKM"; version="1.0"; sha256="0sqxd2pg9y6yn1lnxni32ca3bgbmz04k9z37q9pzgijvf9qvik3f"; depends=[rARPACK]; }; FastKNN = derive2 { name="FastKNN"; version="0.0.1"; sha256="1iz8ybzkvbyqwb00s7cp1zvy9xlmyjid441mf62dq08a0zncnyss"; depends=[assertthat pdist]; }; FastLZeroSpikeInference = derive2 { name="FastLZeroSpikeInference"; version="2018.12.10"; sha256="0ybpmns7bc1j5xzqjl7734grihmvvpa3h52gixv3h70l0r89d8ys"; depends=[]; }; @@ -1429,12 +1478,14 @@ in with self; { FastSF = derive2 { name="FastSF"; version="0.1.1"; sha256="1xajav45h57hchzkvl2pb4mz9xy433lq74jnry0icid8dai5xhwb"; depends=[limSolve Rcpp RcppArmadillo]; }; FatTailsR = derive2 { name="FatTailsR"; version="1.7-5"; sha256="1l2anaf4kixidmvya64ni5b78bl9w2n6xf1lnf297lkdka8gxigw"; depends=[minpack_lm timeSeries]; }; FateID = derive2 { name="FateID"; version="0.1.9"; sha256="0n02591wpi4n0ga42v4xd1jzskcl56nvvls48sdkcnvc7cyi0hjv"; depends=[lle locfit pheatmap princurve randomForest RColorBrewer Rtsne som umap]; }; - FaultTree = derive2 { name="FaultTree"; version="0.99.4"; sha256="0f1pvi0vaaw29vghxi5qgbl6hn3fpwm2gxpdvchp3k2wk6p2gvk3"; depends=[Rcpp RcppArmadillo]; }; + FaultTree = derive2 { name="FaultTree"; version="0.99.5"; sha256="1sg5bidp1wv02xf828g97syh5w6ik5z8ssl7a0hd3ikvh80k4yll"; depends=[Rcpp RcppArmadillo]; }; FcircSEC = derive2 { name="FcircSEC"; version="1.0.0"; sha256="06c1n0xx1q0zh16bgylwbvqzp8q4c5bj626shm2c6r8f9kcjgysh"; depends=[Biostrings seqRFLP stringi]; }; FeaLect = derive2 { name="FeaLect"; version="1.20"; sha256="1dfi0v313x4a4ck98zlk6yr3nfjrdwr5649x9dx3i7yfkypk2k5c"; depends=[lars rms]; }; FeatureHashing = derive2 { name="FeatureHashing"; version="0.9.1.4"; sha256="00yrji3grqgzg8c1hwqq5kb9xgqlnzwymy0b38cwixadc5w5lq8m"; depends=[BH digest magrittr Matrix Rcpp]; }; + FeatureImpCluster = derive2 { name="FeatureImpCluster"; version="0.1.2"; sha256="1ckzn2gylp4xvdwq19975nh3n6a6lrn4ma2qpv7q2jlir6kgwlfs"; depends=[data_table ggplot2]; }; FedData = derive2 { name="FedData"; version="2.5.7"; sha256="07qgqhd3pg86qsih1ap7j02vriwabqna974q68bapfm52qnvm77z"; depends=[curl data_table devtools dplyr foreach Hmisc httr igraph lubridate magrittr ncdf4 raster readr rgdal rgeos sf sp stringr tibble xml2]; }; FeedbackTS = derive2 { name="FeedbackTS"; version="1.5"; sha256="120labhmisw1x1bq8c4bl6l14vayvb9xcm6jsj1awacypgrr2ar2"; depends=[automap gstat mapdata maps proj4 sp]; }; + FertBoot = derive2 { name="FertBoot"; version="0.4.0"; sha256="05j387601ly3pxry99s0b8ffz7cl4wc12x4igyys958xhxzkd48a"; depends=[nls_multstart simpleboot]; }; Fgmutils = derive2 { name="Fgmutils"; version="0.9.5"; sha256="05n8lvx3cs1ckliaj7ni2rbfcrdl7d0pzf9bkwlyd1779h684cxz"; depends=[data_table devEMF ggplot2 gridExtra plyr png sqldf stringr]; }; FiRE = derive2 { name="FiRE"; version="1.0"; sha256="0biy53i10yj261p3y55q7mdkd8g20smszd2dx36z1jkkfr61hy84"; depends=[BH Rcpp]; }; FiSh = derive2 { name="FiSh"; version="1.0"; sha256="07x9z2hn5dsjmg7p6y2flanp7hnzpp2r8d994mwhc2jw5i5xqx2d"; depends=[fda_usc KernSmooth]; }; @@ -1453,14 +1504,14 @@ in with self; { FisHiCal = derive2 { name="FisHiCal"; version="1.1"; sha256="1dds629jlja3vw2l010n1334yh3z10nijqksr0q98ckd2yrwg2rf"; depends=[igraph Rcpp RcppArmadillo]; }; FisPro = derive2 { name="FisPro"; version="1.0"; sha256="0wj5xf8qcrbmfixmsirwaf9yl5gk0bb588csp867c8n5jnqqyq0p"; depends=[Rcpp Rdpack]; }; FishResp = derive2 { name="FishResp"; version="1.0.3"; sha256="0cydxs9knbmsyxrhqi68aqa12x20k6wcs6jw7z58k2jisypwqclw"; depends=[chron lattice mclust respirometry rMR]; }; - FisherEM = derive2 { name="FisherEM"; version="1.5.1"; sha256="1s7gfdw840f51mn76jvcnwpwcf3dzf2w81wlyxqkij45sink92yz"; depends=[elasticnet MASS]; }; + FisherEM = derive2 { name="FisherEM"; version="1.5.2"; sha256="1s9k7p8wij79aljxgmni1nddrqsa1k4bdbxyar54rmrjxxz8y31l"; depends=[elasticnet MASS]; }; FitAR = derive2 { name="FitAR"; version="1.94"; sha256="1mkk3kvfq4v0pdabnhbwrk31ji2mv2v6ns16xsvvr1qyg2fnx6hq"; depends=[bestglm lattice leaps ltsa]; }; FitARMA = derive2 { name="FitARMA"; version="1.6.1"; sha256="02di0pkz6hh92glpn3li6z9azkcqa64ja8zfpy0mkh1l97mw6jsv"; depends=[FitAR]; }; FitUltD = derive2 { name="FitUltD"; version="3.1.0"; sha256="17fj211riybq71k63wjfv2ndc2h46ay5svrac2v5i3b92cb9hkbv"; depends=[ADGofTest assertthat cowplot fitdistrplus ggplot2 MASS mclust purrr]; }; FixSeqMTP = derive2 { name="FixSeqMTP"; version="0.1.2"; sha256="0v1cwq8gapgandm7wiw8p6av6qigydlpmwi6w02p1y7f0hf5ifnp"; depends=[]; }; FixedPoint = derive2 { name="FixedPoint"; version="0.6.1"; sha256="0fxs95rhx17bxv1xx207f83rn4x35gahws4a0n85mfmlb5x2rf5d"; depends=[MASS]; }; FlexDir = derive2 { name="FlexDir"; version="1.0"; sha256="1gb5alv9jsnw0135g63cy757pxhdw6cgwfm8dpcm8dj9zqg10dkm"; depends=[]; }; - FlexGAM = derive2 { name="FlexGAM"; version="0.7.0"; sha256="1pjlsi747j347vwn94391xr3aknnspgw7rc1jnin7g0n1fgkcww4"; depends=[MASS Matrix mgcv scam]; }; + FlexGAM = derive2 { name="FlexGAM"; version="0.7.2"; sha256="04xbglg9vli18fd24k1qyvbl7svp70k67ig3jiss96fgkgbi6w7c"; depends=[MASS Matrix mgcv scam]; }; FlexParamCurve = derive2 { name="FlexParamCurve"; version="1.5-5"; sha256="1404cn3bhcdr3mjhpr072zcyl0wnksarsg2sry5d1scsmrn4xq83"; depends=[nlme]; }; FlexScan = derive2 { name="FlexScan"; version="0.2.0"; sha256="1jd93h96qhqvk9xx3va78v76fzl6y0rbm85022zpvk3wz4z2g1xs"; depends=[smerc sp spdep]; }; FlickrAPI = derive2 { name="FlickrAPI"; version="0.1.0.0"; sha256="0bbk7ac4s3gbcjhfg3yz06pxjid3hpd0mqzxzlj5sghn95f479h9"; depends=[jsonlite magrittr RCurl stringr]; }; @@ -1471,31 +1522,30 @@ in with self; { Flury = derive2 { name="Flury"; version="0.1-3"; sha256="105fv9azjkd8bsb9b8ba3gpy3pjnyyyp753qhrd11byp3d0bbxy0"; depends=[]; }; ForIT = derive2 { name="ForIT"; version="1.0"; sha256="0mi2cw09mbc54s8qwcwxin2na1gfyi60cdssy2ncynma7alq3733"; depends=[]; }; ForImp = derive2 { name="ForImp"; version="1.0.3"; sha256="0ai4i6q233sdsi8xilpbkxjqdf4pxw93clkdkhcxal6q43rnf7vd"; depends=[homals mvtnorm sampling]; }; - ForeCA = derive2 { name="ForeCA"; version="0.2.4"; sha256="1i19lmhl1kgfnd7zipjr6xp5ir9rvjy13sbq321jaf8ya60bjdd9"; depends=[ifultools MASS reshape2 sapa]; }; + ForeCA = derive2 { name="ForeCA"; version="0.2.7"; sha256="1falhz9v0z76h60gz66rh9wvk3jsjv8fvbkhkx9jmzbrkla397cd"; depends=[astsa MASS reshape2]; }; ForecastComb = derive2 { name="ForecastComb"; version="1.3.1"; sha256="07cbiv172mpkwvg6svhwgavlfy2144ir3y1l7w37wbd0ygs514id"; depends=[forecast ggplot2 Matrix mtsdi psych quadprog quantreg]; }; ForecastCombinations = derive2 { name="ForecastCombinations"; version="1.1"; sha256="07vzgm2jy992p1l9b8rsv2lbc8cbfzvql85n5ah4p4l3zjxdxgk9"; depends=[quadprog quantreg]; }; - ForecastFramework = derive2 { name="ForecastFramework"; version="0.10.3"; sha256="1c57jfcd156468s0bj0v523clg6pnwbw5spkqchbyz0fxzadc14p"; depends=[abind dplyr lubridate magrittr R6 reshape2 tibble]; }; ForecastTB = derive2 { name="ForecastTB"; version="1.0.1"; sha256="1wqgw4i65ajwj8la8mgv2qqm4ydgk90i6chdkd8h33rlwh8yddc6"; depends=[circlize decomposedPSF forecast ggplot2 gridExtra imputeTestbench PSF RColorBrewer reshape2]; }; ForestDisc = derive2 { name="ForestDisc"; version="0.1.0"; sha256="1mzlrqjxsja51yyxckj4ym1vpfpq30vlhvs8clrg8jv7kz86hdwk"; depends=[moments nloptr randomForest]; }; - ForestFit = derive2 { name="ForestFit"; version="0.5.7"; sha256="08q4cibxhq02qawpyvc8cnr3x1gc8pi1rzdqq3i86764ssb2649a"; depends=[ars]; }; + ForestFit = derive2 { name="ForestFit"; version="0.6.1"; sha256="1gbf1pgmqw102vp1792jls7f53ag93spkyyvk3qh1s76ag3shzac"; depends=[ars pracma]; }; ForestGapR = derive2 { name="ForestGapR"; version="0.0.2"; sha256="0xig9nal83xg312kgq6dhi7n67sa8ixlnh79x957w3n5rv9kdyf2"; depends=[igraph raster rgeos sp spatstat VGAM viridis]; }; - ForestTools = derive2 { name="ForestTools"; version="0.2.0"; sha256="0q9nk9n001bnz5hd8cxj6wmaf8c7g0kwfkpa0hk6ap42666rrrah"; depends=[APfun imager raster rgeos sp]; }; + ForestTools = derive2 { name="ForestTools"; version="0.2.1"; sha256="08cx8pyg2giwpf1lnq5c8s98c1srspmgcwj62rdmb69gl0yp0l1j"; depends=[APfun doSNOW foreach imager plyr progress radiomics raster rgeos sp]; }; FormalSeries = derive2 { name="FormalSeries"; version="1.0"; sha256="09m4ifinasww0xfprs29xsrqhxxkw9zffb3919xnkkjkwp0nax4v"; depends=[]; }; Formula = derive2 { name="Formula"; version="1.2-3"; sha256="0wiqh8rr9d5ciy80wj8f5fnmiiw0ywanvvnhkwd622dx42dk848l"; depends=[]; }; ForwardSearch = derive2 { name="ForwardSearch"; version="1.0"; sha256="0yd47832piqxzjxgl7bc8pn0c8f7vbgsm9z6894rzyi615kjl70b"; depends=[robustbase]; }; FossilSim = derive2 { name="FossilSim"; version="2.1.1"; sha256="1dffk14lszq84k61s1jar658qpjc1hm6rwa1gcwwvppvxj6gkvky"; depends=[ape TreeSim]; }; FourScores = derive2 { name="FourScores"; version="1.5.1"; sha256="1la9d1hfcmi0zg58yl0a7nj36giagh0fwrc7wxyqdq0c7zf1hfzq"; depends=[]; }; FourgameteP = derive2 { name="FourgameteP"; version="0.1.0"; sha256="15yn47737768fkjjv8ykc9lw7x58pq44k90d9d4c9hp20zw5f3by"; depends=[]; }; - FrF2 = derive2 { name="FrF2"; version="2.2"; sha256="0h3inqnb726mbazj72b6gnbn7mqhd9lrs0x5cragq10szx2hvpa8"; depends=[DoE_base igraph scatterplot3d sfsmisc]; }; + FrF2 = derive2 { name="FrF2"; version="2.2-2"; sha256="048awbsyzpjmr0kmz3k5yi5vksa9iiffabp6q8xsww097vcngxzb"; depends=[DoE_base igraph scatterplot3d sfsmisc]; }; FrF2_catlg128 = derive2 { name="FrF2.catlg128"; version="1.2-1"; sha256="0i4m5zb9dazpvmnp8wh3k51bm0vykh4gncnhdg71mfk4hzrfpdac"; depends=[FrF2]; }; FractalParameterEstimation = derive2 { name="FractalParameterEstimation"; version="1.1.2"; sha256="16xm2g723dm1n1h6as6yvy92sigzhj31f269g5rrzqjcd4d5m8an"; depends=[]; }; Fragman = derive2 { name="Fragman"; version="1.0.9"; sha256="03vmvmnyza4i46v1awkdjz6ccbsiq49dm0mlmwsm801rq6yfihgp"; depends=[]; }; Frames2 = derive2 { name="Frames2"; version="0.2.1"; sha256="0xbz19v5r1h15p8mf94vacw04h3kvmm88ayy4b1aqxrd925n63mw"; depends=[MASS nnet sampling]; }; - FrechForest = derive2 { name="FrechForest"; version="0.8.1"; sha256="062m5z3j21rkjlkn3caqc0a3y6228ikm5cgry5hs5xvqrab32250"; depends=[doParallel doRNG foreach kmlShape]; }; FreeSortR = derive2 { name="FreeSortR"; version="1.3"; sha256="1m6ahhixbbizzn09pz71zvinrdshn3j6gmy05jdxa9d932agqk0w"; depends=[ellipse smacof vegan]; }; FreqProf = derive2 { name="FreqProf"; version="0.0.1"; sha256="1yqn2435l2sghfcv5mma0rv9yqvpa69z8cqqsjlrlbih9gib82d4"; depends=[ggplot2 reshape2 shiny]; }; Fstability = derive2 { name="Fstability"; version="0.1.2"; sha256="0kscdmrs5namvhi112b47c811w0bg9s3xg48mfa566pxwxz1nv45"; depends=[]; }; - FunChisq = derive2 { name="FunChisq"; version="2.5.0"; sha256="10x9c8a15qsrhnqmq9bxla4s0fanlys9fdiaacgvgspnc8426ppg"; depends=[BH Rcpp Rdpack]; }; + FunCC = derive2 { name="FunCC"; version="1.0"; sha256="0n8fnrq3grsxxcz1841d3d643nyrwc7y15na1205zxq6rmdjx7wa"; depends=[biclust ggplot2 narray RColorBrewer reshape]; }; + FunChisq = derive2 { name="FunChisq"; version="2.5.1"; sha256="153l9mlynfl1j6ld7v4dl6lvs6rz20hchz009qngpg13szddafzb"; depends=[BH Rcpp Rdpack]; }; FunCluster = derive2 { name="FunCluster"; version="1.09"; sha256="0i73asn1w4s6ydf2ddn5wpr0mwbbxzgmaly1pslarzkx71wk03fz"; depends=[cluster Hmisc]; }; FuncMap = derive2 { name="FuncMap"; version="1.0.10"; sha256="0iaay6qz9a2s77xjfpp7wm37y7xwnvmlw6s5k5riccmqzc6dcjs7"; depends=[mvbutils]; }; FunnelPlotR = derive2 { name="FunnelPlotR"; version="0.2.3"; sha256="16bw1fx2pzmxm8gavq791drnpsczxq5yyfbnl2h1xcrzlw4fw4b0"; depends=[dplyr ggplot2 ggrepel rlang scales]; }; @@ -1507,6 +1557,7 @@ in with self; { FuzzyNumbers = derive2 { name="FuzzyNumbers"; version="0.4-6"; sha256="1zba28kmzpcza099k1ck7aqn7ms2fh3ijcn05xdimvssjbhsag81"; depends=[]; }; FuzzyNumbers_Ext_2 = derive2 { name="FuzzyNumbers.Ext.2"; version="3.2"; sha256="0gldq0bg1p1vmrn35prha44d7lyymz0jzshdyp2c5rx433mny7h5"; depends=[FuzzyNumbers]; }; FuzzyR = derive2 { name="FuzzyR"; version="2.3"; sha256="0y22924vhvybiwhsfl3svizk4sgrvg4a8wl30b5kb2c0vjv03ad6"; depends=[plyr shiny]; }; + FuzzySTs = derive2 { name="FuzzySTs"; version="0.1"; sha256="1xg140vaw3rwv62n3s52v1z96nfii43m6b8b3l84cdyv5y9bwrln"; depends=[FuzzyNumbers polynom]; }; FuzzyStatProb = derive2 { name="FuzzyStatProb"; version="2.0.4"; sha256="1jpqb8xczi1d4g306vrwpi02f9h59aki1pgnckvfmiclr306prpb"; depends=[DEoptim FuzzyNumbers MultinomialCI]; }; FuzzyStatTra = derive2 { name="FuzzyStatTra"; version="1.0"; sha256="1ijrlnlmq9d5ahgrpzba6kzkaq1zq59zqdgcizybsf9alsswcm00"; depends=[]; }; FuzzyToolkitUoN = derive2 { name="FuzzyToolkitUoN"; version="1.0"; sha256="104s45mmlam67vwpshhpns2mgwvmhnbj8w1918jyk2r5mqibwz06"; depends=[]; }; @@ -1517,13 +1568,13 @@ in with self; { GACFF = derive2 { name="GACFF"; version="1.0"; sha256="0lhjzb6cj8838dh4423929z7bwpa6cv3dn84rccwi3382vsq9g2c"; depends=[]; }; GAD = derive2 { name="GAD"; version="1.1.1"; sha256="0lyrw0d7i7yn1wkqlbf3rg3dnijfwsjn3kdbsg19hmvwq6qpsak2"; depends=[matrixStats R_methodsS3]; }; GADAG = derive2 { name="GADAG"; version="0.99.0"; sha256="1ycg48idrq2yrk1fxs16yl5wwg3kbfki8xppmh311rrzf75c6z4g"; depends=[igraph MASS Rcpp RcppArmadillo]; }; - GADGET = derive2 { name="GADGET"; version="0.2.0"; sha256="0z259dahki3ci5jskm2qp5q89bkr0wr74h7yxy057airc2m1cm7z"; depends=[DiceKriging DiceOptim lhs pbapply]; }; GADMTools = derive2 { name="GADMTools"; version="3.8-1"; sha256="02rqpvqawk0y8w20d89cbdbjlmpyvvp826gzzdajqba1wazj6ikx"; depends=[classInt dplyr ggmap ggplot2 ggspatial gridExtra jsonlite lattice maptools prettymapr raster RColorBrewer rgdal rgeos rosm sf sp stringr]; }; GAIPE = derive2 { name="GAIPE"; version="1.0"; sha256="04iarbwxrhn48bk329wxis7ifzndi67kpjx6dcakawkh3g2mzsfz"; depends=[]; }; GAMBoost = derive2 { name="GAMBoost"; version="1.2-3"; sha256="0450h9zf12r524lxk1lrv9imvvkk6fmyd3chnxp18nnvys7215pv"; depends=[Matrix]; }; GAMens = derive2 { name="GAMens"; version="1.2.1"; sha256="1z10wxcg277fra2lch464l0kb02lspw9qr1i2wmq11wcz0k9qnl8"; depends=[caTools gam mlbench]; }; GANPA = derive2 { name="GANPA"; version="1.0"; sha256="0ia8djv46jm397nxjrm9yc5gacf1r4z0ckiliz57cbrqwh7z2wpa"; depends=[GANPAdata]; }; GANPAdata = derive2 { name="GANPAdata"; version="1.0"; sha256="0mhdadl7zgsacn59ym42magg3214k1xhabwn78fv7kgccszcgc86"; depends=[]; }; + GAS = derive2 { name="GAS"; version="0.3.3"; sha256="0w5rgx3f965jxl2r6rhsj5ad4bbbwir8hbki3q0cs2z9hc4g6vh9"; depends=[cubature MASS numDeriv Rcpp RcppArmadillo Rsolnp xts zoo]; }; GAabbreviate = derive2 { name="GAabbreviate"; version="1.3"; sha256="0cq6bg3w0ji44rsz1p4j17fk0jg8rafbjixwi3fjdndc3yd874r5"; depends=[GA psych]; }; GAparsimony = derive2 { name="GAparsimony"; version="0.9.4"; sha256="1p1s5q1basy9v3jy1qxpx5g8mzpkwdfarxmmf7s06c6wq0dl9vp8"; depends=[foreach iterators]; }; GB2 = derive2 { name="GB2"; version="2.1"; sha256="06rcck97pdm1rsb02cy0jd9fknv0mz5jwk364gsaahdk56ddk18a"; depends=[cubature hypergeo laeken numDeriv survey]; }; @@ -1534,18 +1585,18 @@ in with self; { GCPM = derive2 { name="GCPM"; version="1.2.2"; sha256="0k2ng78bk3bxpj6nz80j5cvjd56zjz328ga68vyyc3hvdjgpspqj"; depends=[Rcpp RcppProgress]; }; GCalcium = derive2 { name="GCalcium"; version="1.0.0"; sha256="0r84qmdsqsgpaqr08imh48mdvy26s2b62hi0hxxwhr9kg7qvj0rd"; depends=[caTools dplyr]; }; GCalignR = derive2 { name="GCalignR"; version="1.0.2"; sha256="1x0as6mmapvn3a28c3qk3wd5gjkx17xgf9c7yb68wp3lj8pknsnm"; depends=[ggplot2 pbapply readr reshape2 stringr]; }; - GD = derive2 { name="GD"; version="1.7"; sha256="1jazyvkqjjqc8m7hnc0ld4hdzbx7g64bhd5j6mkgjjwa2458rqph"; depends=[]; }; + GD = derive2 { name="GD"; version="1.9"; sha256="00sagb5hxxpgvbycbf86kw7nf0wvxcbam9ni8nlp7asjkmkpv5zq"; depends=[badger]; }; GDAdata = derive2 { name="GDAdata"; version="0.93"; sha256="13ks97i289rc4i7gpqrifwbj0m9rx8csjhnfg8mad10qmjwz7p8b"; depends=[]; }; - GDAtools = derive2 { name="GDAtools"; version="1.4"; sha256="1i5g7gzl3fkhwxqizqwrn8098s5lrr0mk17wmpyf92s1sy315cpv"; depends=[FactoMineR nleqslv nnet]; }; + GDAtools = derive2 { name="GDAtools"; version="1.5"; sha256="1xya99dqzb9mgkw7h7aj592ya36j1hai8j8zgy1dpmpfxwsbjd6y"; depends=[FactoMineR ggplot2 ggrepel moreparty nleqslv nnet RColorBrewer rlang]; }; GDELTtools = derive2 { name="GDELTtools"; version="1.2"; sha256="1rx6kjh7kmyycqapvbizcxkcfp09qvqv7k8f25v333sxkacpz6p5"; depends=[plyr TimeWarp]; }; - GDINA = derive2 { name="GDINA"; version="2.7.9"; sha256="13pmj069r04h38hg61ibyn1ab15zdy9m0qv60vi25ahgsmg6ccvx"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; - GE = derive2 { name="GE"; version="0.0.7"; sha256="0fz90qda36gmdivp12gfxa6xm0fra583676vkcl8arvccqs9cn34"; depends=[CGE data_tree DiagrammeR stringr]; }; + GDINA = derive2 { name="GDINA"; version="2.8.0"; sha256="0chxnhp37xfd78gafkgwqrmc0jf3pvpdyrkc438kl0l53fb7dld7"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; + GE = derive2 { name="GE"; version="0.1.4"; sha256="0h0g3ngdih69lhkkjxbn6i0abw8kg2jdpqbvzzn2xw0cjww2fjh1"; depends=[CGE data_tree DiagrammeR]; }; GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; GEEmediate = derive2 { name="GEEmediate"; version="1.1.3"; sha256="1xprkpjp1pkq4ci1n32d3yy80hx3r4xf2j7f6hv7dvsn4cvdp417"; depends=[gee]; }; GENEAclassify = derive2 { name="GENEAclassify"; version="1.4.18"; sha256="17m58i3jridgxzcckcm0ydd2ijw3zjvg9w4an8j5jbnr62hmcb2s"; depends=[changepoint GENEAread MASS rpart signal]; }; GENEAread = derive2 { name="GENEAread"; version="2.0.8"; sha256="1phiwdq05h92vlrjbvx4xvazzls5bdlnwfxn5mghx0v9j0n3ahrm"; depends=[bitops mmap]; }; GENEAsphere = derive2 { name="GENEAsphere"; version="1.5.1"; sha256="1kgj7i9v2yn0b8lvvsf0nc6lg3i2syrcygwa51pcrzp57vv7hxn5"; depends=[GENEAread ggplot2 MASS misc3d rgl]; }; - GENLIB = derive2 { name="GENLIB"; version="1.0.8"; sha256="16n6i7g60hy43bkx075132k5h6ngz3llv0r91q01cnnqciyph6ka"; depends=[bootstrap doParallel foreach kinship2 lattice Matrix quadprog Rcpp]; }; + GENLIB = derive2 { name="GENLIB"; version="1.0.9"; sha256="1ch3wz3y6p6z0rs9b3877iihvp0ycha062ajzf2fhxgjzgf0v5d1"; depends=[bootstrap doParallel foreach kinship2 lattice Matrix quadprog Rcpp]; }; GENMETA = derive2 { name="GENMETA"; version="0.1"; sha256="1mxwqnbg5bvx1qg62xcd62dl81k11l64yckhl3v854asnaczq3pp"; depends=[magic MASS Matrix]; }; GEOmap = derive2 { name="GEOmap"; version="2.4-4"; sha256="0wk2v0fwcwcm59k711fg829h2w58wkd36im4mg974iai6mqif7qh"; depends=[fields MBA RPMG splancs]; }; GESE = derive2 { name="GESE"; version="2.0.1"; sha256="0h3s2sbnv5wilr2mj6bnl2892p16pxrs341gg6jql1a540p669sk"; depends=[kinship2]; }; @@ -1562,24 +1613,26 @@ in with self; { GGClassification = derive2 { name="GGClassification"; version="0.1"; sha256="03wis5ng2mnfhp33xrag8xbmvjagzr1909a6x94wv7s2spji00rp"; depends=[Rcpp RcppEigen]; }; GGEBiplotGUI = derive2 { name="GGEBiplotGUI"; version="1.0-9"; sha256="0nd0ky3m1avy82z48g7hcysq0y0agxjxdn0g624dkm2w99avxw3j"; depends=[rgl tkrplot]; }; GGEBiplots = derive2 { name="GGEBiplots"; version="0.1.1"; sha256="1xnxaylikjd378flw3rqw36z27b2limkmyad97zhf1cbva317d1b"; depends=[gge GGEBiplotGUI ggforce ggplot2 scales]; }; - GGIR = derive2 { name="GGIR"; version="1.11-0"; sha256="0r0k48qbmm5fnl6rgpwgd8jc4l8nyjp2f4vv2givdqkmylw22281"; depends=[bitops data_table doParallel foreach GENEAread matlab Rcpp signal tuneR zoo]; }; + GGIR = derive2 { name="GGIR"; version="2.0-0"; sha256="10s5q3srmms3h4nwvsdd8clqvifimkqihw5jy5zh03aplwkqwzrq"; depends=[bitops data_table doParallel foreach GENEAread matlab Rcpp signal tuneR zoo]; }; GGMM = derive2 { name="GGMM"; version="1.0.1"; sha256="1d0qxxdk7b3hzg7dimsbjabpf5rxn3azn2hy00pa1c6wya7kxyvv"; depends=[equSA huge mvtnorm]; }; + GGMncv = derive2 { name="GGMncv"; version="1.1.0"; sha256="1h7mym10z2y3p6k1xkrnxp3442720453h4k8zclz7kvcqbdwwaiq"; depends=[ggplot2 glassoFast MASS numDeriv psych Rcpp RcppArmadillo Rdpack reshape]; }; GGMridge = derive2 { name="GGMridge"; version="1.1"; sha256="0zbfvvp7l836m118m8nmdvw1w7xq6d3b7qirskjsq1dkk23j41hs"; depends=[MASS mvtnorm]; }; GGMselect = derive2 { name="GGMselect"; version="0.1-12.4"; sha256="0p9djnkclnk64bcrd66agi2gw2j3bqvqhamfm0h59b810kh50kbn"; depends=[gtools lars mvtnorm]; }; - GGUM = derive2 { name="GGUM"; version="0.4"; sha256="1l3kwj207c1660msxs085xrjcydxxb5q9i40m8rl25r2nrsm0yip"; depends=[abind psych Rdpack viridis xlsx]; }; - GGally = derive2 { name="GGally"; version="1.5.0"; sha256="082s321zspg5al6acigwrhg4fsrmkkk5caabg662qbcy8v6n34h6"; depends=[ggplot2 gtable plyr progress RColorBrewer reshape rlang]; }; + GGUM = derive2 { name="GGUM"; version="0.4-1"; sha256="09f4vha23z915fn8nj7wj4ry1m7ifqfqig1gbn0vx6kwg1d03whq"; depends=[abind psych Rdpack viridis xlsx]; }; + GGally = derive2 { name="GGally"; version="2.0.0"; sha256="1gkmpzh1yvwvypkw0nwqv3gsf6za3220wig3rfv8g23kss60rl1s"; depends=[ggplot2 gtable lifecycle plyr progress RColorBrewer reshape rlang scales]; }; GHQp = derive2 { name="GHQp"; version="1.0"; sha256="0qpcpwv7rz67qhz1p5k2im02jvs7l8z9sa6ypz13hig5fzm8j9bp"; depends=[statmod]; }; GHS = derive2 { name="GHS"; version="0.1"; sha256="1khjfy62a67r59s2rax9mmnqy5xnnwhbydzhqwwmyspl48mxycdj"; depends=[MASS]; }; GIFTr = derive2 { name="GIFTr"; version="0.1.0"; sha256="101vr2qasky8hnxp5i3lhlnymwzciypqwvhpl6mrr0r0czgpcz2f"; depends=[glue stringr]; }; GIGrvg = derive2 { name="GIGrvg"; version="0.5"; sha256="0mx4n4kf34343yiww80fw5yy0x624xsj71n8fr4dm0a2338pxq8v"; depends=[]; }; GISTools = derive2 { name="GISTools"; version="0.7-4"; sha256="06alb5d2k4qj344i9cpgm3lz9m68rkmjqfx5k2hzn7z458xjrlxs"; depends=[maptools MASS RColorBrewer rgeos sp]; }; + GInSARCorW = derive2 { name="GInSARCorW"; version="1.15.6"; sha256="0rpq8ng9skxg6qzhainsc9jkznql6glq65a1bdbrkc6pwx3pc7lc"; depends=[circular raster rgdal rgeos sp]; }; GJRM = derive2 { name="GJRM"; version="0.2-2"; sha256="0hwa3nnlk3q810x5gyx9la090vn8fysm9rdv2gg80j8jifzhs48h"; depends=[copula distrEx evd gamlss_dist ggplot2 ismev magic matrixcalc matrixStats mgcv mnormt numDeriv psych Rmpfr scam survey survival trust trustOptim VGAM VineCopula]; }; GK2011 = derive2 { name="GK2011"; version="0.1.3"; sha256="13vafhbgcsj485f12qv962y07v3hil3pla51vkl2b030amzy86jv"; depends=[]; }; GLDEX = derive2 { name="GLDEX"; version="2.0.0.7"; sha256="1w5ahwbnz9xsn3rdxzcxxvc6m5cgq46nln3i5v8vp4imrs8aafb3"; depends=[cluster]; }; GLDreg = derive2 { name="GLDreg"; version="1.0.7"; sha256="1wjrr4x1k0fz8nx9idb4ysamldypriiypj96b5v028lx38jwsk3l"; depends=[ddst GLDEX]; }; GLIDE = derive2 { name="GLIDE"; version="1.0.2"; sha256="1z5h8br6aig24g5gsh8h6npm269id3h5gjjyf5avs4v08b51rpcv"; depends=[doParallel foreach MASS]; }; GLMMRR = derive2 { name="GLMMRR"; version="0.2.0"; sha256="0s3jfh720acfmbadilq2c6gql3yifsbijpmw1jkzbsdc87pqi1db"; depends=[lattice lme4]; }; - GLMMadaptive = derive2 { name="GLMMadaptive"; version="0.6-8"; sha256="07pfvbzj4brfj5a66vqnj41zd335vy74hdv0kj7ziad18nh7xqla"; depends=[MASS matrixStats nlme]; }; + GLMMadaptive = derive2 { name="GLMMadaptive"; version="0.7-0"; sha256="0ngqshbqi2gzykh8ckg8867mqvzlbyjgs31dsz00k7yzs25gc4np"; depends=[MASS matrixStats nlme]; }; GLMaSPU = derive2 { name="GLMaSPU"; version="1.0"; sha256="0zx2bza5v5cfp9v7hf42s57522b6prawcwl77aa3kvjcnb0ish6g"; depends=[MASS mnormt mvtnorm Rcpp RcppArmadillo]; }; GLMpack = derive2 { name="GLMpack"; version="0.1.0"; sha256="15bpw42y999ljdw8ka2ysrrm0y73xz37wwi3j67i01wafipq82xy"; depends=[AER censReg effects foreign lme4 lmtest MASS Matrix nnet pBrackets plm pscl sandwich]; }; GLMsData = derive2 { name="GLMsData"; version="1.0.0"; sha256="12q41zxniblzys20vjrf5skj8cbzlwb92mwk6jvnyd86lc70bsh1"; depends=[]; }; @@ -1588,14 +1641,17 @@ in with self; { GMCM = derive2 { name="GMCM"; version="1.4"; sha256="13ds8da7lqkvm1mz75440hmn9smi9pznb8bknmckg8vd3fc70f6x"; depends=[ellipse Rcpp RcppArmadillo]; }; GMDH = derive2 { name="GMDH"; version="1.6"; sha256="093glyz73246m5f2xb2xgbgi80haj4fanmr325byr99dnf4x35yn"; depends=[MASS]; }; GMDH2 = derive2 { name="GMDH2"; version="1.5"; sha256="0y132zc8q4daj4856xikp4xvrqcibmn9r2shnmwpwxnfbik2ikfb"; depends=[e1071 glmnet magrittr MASS nnet plotly randomForest xtable]; }; - GMDHreg = derive2 { name="GMDHreg"; version="0.2.0"; sha256="07qk9jbav9gm3gh3ag7nz273iab5zlkn0yz31zs2hw646ik1yn14"; depends=[]; }; + GMDHreg = derive2 { name="GMDHreg"; version="0.2.1"; sha256="1rav4xhli8gy27sa5zh3lvpgz6zpff37783z1k23n0xf4n0h61nh"; depends=[]; }; GMKMcharlie = derive2 { name="GMKMcharlie"; version="1.0.3"; sha256="1ncz3czjg1md1hfahc2403k33nby11ldlq0yixpjs4s8panwpgsb"; depends=[Rcpp RcppArmadillo RcppParallel]; }; - GMMAT = derive2 { name="GMMAT"; version="1.1.2"; sha256="1xifcm6kv4v3hw4zskggifd16cn1v7cmnwsgwjfbgrgz3qvyac5c"; depends=[CompQuadForm foreach Matrix Rcpp RcppArmadillo SeqArray SeqVarTools]; }; + GMMAT = derive2 { name="GMMAT"; version="1.2.0"; sha256="09zvqak85242xkkfwkhw8r3j8wj6s3zx5w2rcx26gn9lgifmfdhz"; depends=[CompQuadForm foreach Matrix Rcpp RcppArmadillo SeqArray SeqVarTools]; }; GMMBoost = derive2 { name="GMMBoost"; version="1.1.3"; sha256="0p9jnwjc8g83qsxkjz9lhaip1hkpdg6n4fdpz34b96vb7qhzrrqc"; depends=[magic minqa]; }; - GMSE = derive2 { name="GMSE"; version="0.4.0.13"; sha256="0xvdm0q7ghw6hr26134m0g33wfclwf7q9rdrlkkyb6mnzasqdfgs"; depends=[shiny shinydashboard shinyjs]; }; + GMPro = derive2 { name="GMPro"; version="0.1.0"; sha256="0xhja221wz89cm76qbq01nqz73jx7d2zx9i2ky5vd31zkspmlqkm"; depends=[combinat igraph transport]; }; + GMSE = derive2 { name="GMSE"; version="0.6.0.4"; sha256="1q3laiyrkps9v51hlhyvmam9a5a1djmxkgjl562p46fszk1hm17n"; depends=[shiny shinydashboard shinyjs]; }; GMSimpute = derive2 { name="GMSimpute"; version="0.0.1.0"; sha256="1hmn5ss81df9j9ibgibs95j98irqzif94vq0c861mq4a65y59fcp"; depends=[ggplot2 glmnet reshape2]; }; - GNAR = derive2 { name="GNAR"; version="1.0"; sha256="0iv82f118b54g09dc5ggr2z793dgjhxj22v05kypz5fnbdxcl5qf"; depends=[igraph wordcloud]; }; + GNAR = derive2 { name="GNAR"; version="1.1.0"; sha256="14vp64wlpi0z0h3rwfncdmnrhz57nmv1d6n3b0zi1kmylmpng2sw"; depends=[igraph wordcloud]; }; GNE = derive2 { name="GNE"; version="0.99-3"; sha256="11pk9w4xj27dyfn05bna99xqdb89wp0ljl798d5dyk5fcnhh7217"; depends=[alabama BB nleqslv SQUAREM]; }; + GNRS = derive2 { name="GNRS"; version="0.1.0"; sha256="05iclnrdcp4i6h8lfkw4dbkl0qmm814rvb621ypq4w5r4g96h72r"; depends=[jsonlite RCurl rjson]; }; + GNSSseg = derive2 { name="GNSSseg"; version="6.0"; sha256="1zkj98xh63wfyyygg2ahq3m54xlvi3x9sy0rhcn2dlfvbxaxfl4k"; depends=[capushe robustbase]; }; GOFShiny = derive2 { name="GOFShiny"; version="0.1.0"; sha256="04m08d9w8qqbql86c18qpnwym7agry8wspfwrnbbyp52h2pn2gxb"; depends=[rhandsontable rmarkdown shiny]; }; GOGANPA = derive2 { name="GOGANPA"; version="1.0"; sha256="1xbir21zvr5hv2y6nndzpsrpmnr7glrc7y6xgcyb856wx46ajan9"; depends=[GANPA WGCNA]; }; GORCure = derive2 { name="GORCure"; version="2.0"; sha256="1hazin0q74hf16azxa5h08kfj7g1079q77n2fn4fahpfxb8hmvwm"; depends=[ICsurv MASS pracma survival]; }; @@ -1610,6 +1666,7 @@ in with self; { GPM = derive2 { name="GPM"; version="3.0.1"; sha256="01vd68w5pnwhng83x5i0k9c5fhsn9siyzzndkvkmpis4mjm42sgv"; depends=[doParallel foreach iterators lattice lhs pracma randtoolbox Rcpp RcppArmadillo]; }; GPRMortality = derive2 { name="GPRMortality"; version="0.1.0"; sha256="0k5pfyl7r5vsac927aqx19lz93vyk5l3ydqkazn2hwwaw1lh2wav"; depends=[rstan]; }; GPSCDF = derive2 { name="GPSCDF"; version="0.1.1"; sha256="1l50a6p81lykiqlqiwb6kix5s6wzwdi8vddqhl418dlwlsh83ybf"; depends=[dplyr MASS nbpMatching nnet survival]; }; + GPSeqClus = derive2 { name="GPSeqClus"; version="1.0.0"; sha256="1zxihac4hd2b1vvrb36v2c6lhn8pfs8q4zgzi2flyb0dnb5di09r"; depends=[geosphere leaflet leaflet_extras plotKML plyr purrr rgdal sp spacetime suncalc]; }; GPareto = derive2 { name="GPareto"; version="1.1.4.1"; sha256="0kmy7v3sm1h91havzla0fzmzihncbk01i7pbzsdq6cwhz7225mqj"; depends=[DiceDesign DiceKriging emoa KrigInv ks MASS pbivnorm pso randtoolbox Rcpp rgenoud rgl]; }; GPfit = derive2 { name="GPfit"; version="1.0-8"; sha256="05mpiyi2vxv0wqp422n1mnxa8msc4daq40cwpnpngbcwqhlgqkby"; depends=[lattice lhs]; }; GPoM = derive2 { name="GPoM"; version="1.3"; sha256="1c870dfbpswx78n4s1v6zy0l1qknrs9335af0z01v1miyrmi95gd"; depends=[deSolve float rgl]; }; @@ -1626,6 +1683,7 @@ in with self; { GRS_test = derive2 { name="GRS.test"; version="1.1"; sha256="1ap9453rj5zan6c3ix7jb1qxhxh42bfv295dgqbgjpdygjdlbm6n"; depends=[]; }; GRTo = derive2 { name="GRTo"; version="1.3"; sha256="1xkcx2agvrpfnmplgaqx70vz303v8rhwnxdyr4hmdlf4h92lbv8i"; depends=[bootstrap]; }; GSA = derive2 { name="GSA"; version="1.03.1"; sha256="05x9wspah1cdznjpncqam1iawsxdiigyl8v2anyhss2k7wwd94p1"; depends=[]; }; + GSA_UN = derive2 { name="GSA.UN"; version="1.0.0"; sha256="1jj9scv9x32zb24114a4sa43xvjmf3gmq8lnfablldjn7p7yx9cv"; depends=[e1071]; }; GSAQ = derive2 { name="GSAQ"; version="1.0"; sha256="1p1rab2dlh4h9bfg464nhx708p7kc4q01ifccdh5756lq1qh2kzv"; depends=[]; }; GSAfisherCombined = derive2 { name="GSAfisherCombined"; version="1.0"; sha256="1xhq5nc3kbz3ml9qkdxm6m0c65fybabfhgqlwii2105jl0ll7qy5"; depends=[]; }; GSAgm = derive2 { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[edgeR survival]; }; @@ -1634,7 +1692,7 @@ in with self; { GSIF = derive2 { name="GSIF"; version="0.5-5.1"; sha256="1nc177f200m3wfppmdh9cf6g2npx87c0mz2g17zdrw5crx688i8d"; depends=[aqp dismo gstat plotKML plyr raster rgdal RSAGA scales sp]; }; GSM = derive2 { name="GSM"; version="1.3.2"; sha256="04xjs9w4gaszwzxmsr7657ry2ywa9pvpwpczpvinxi8vpj347jbb"; depends=[gtools]; }; GSMX = derive2 { name="GSMX"; version="1.3"; sha256="1n1d7rixj14ari46snsmi48qfmy00ihmzvayk3hkrp2d2d0xi2gh"; depends=[MASS]; }; - GSODR = derive2 { name="GSODR"; version="2.1.0"; sha256="11vww5yx9cz5jgnfm93akh6x6cl2j818b2p7iqc57vly6pi1fz2v"; depends=[countrycode curl data_table future_apply httr R_utils]; }; + GSODR = derive2 { name="GSODR"; version="2.1.1"; sha256="1x996cpbq0ms9l94kw02c9aa8by0y0j8jsqff6fpndhyppjk59yv"; depends=[countrycode curl data_table future_apply httr R_utils]; }; GSSE = derive2 { name="GSSE"; version="0.1"; sha256="034mmxa6kjq5kgikhb5q75viagz5ck9irrjbxm26zq9099qxm13b"; depends=[Iso zoo]; }; GSelection = derive2 { name="GSelection"; version="0.1.0"; sha256="052vh1haxlzbh3c5i24nrwphapik1y8ribmh6q4axd447ggc0ff9"; depends=[gdata penalized SAM]; }; GSparO = derive2 { name="GSparO"; version="1.0"; sha256="0xna2crxqwy8fj0s79rxbdcaz9x912rp1vdwqv1557fsnmfv2yf0"; depends=[ggplot2 ThreeWay]; }; @@ -1644,29 +1702,31 @@ in with self; { GUTS = derive2 { name="GUTS"; version="1.1.1"; sha256="05njlykhxs62k5cjrfwgbqyckbvf2jxjshg3avf6vhwwf58qyjq9"; depends=[Rcpp]; }; GUniFrac = derive2 { name="GUniFrac"; version="1.1"; sha256="1vgij7c9b0afl5wzwcn0pjdvn8gqz2jxk5q0gchd9zk1qd10a1vl"; depends=[ape matrixStats vegan]; }; GVARX = derive2 { name="GVARX"; version="1.3"; sha256="00iqwkshp1i9338x9khh8hyszad6150qb11jlvky5fm488wcw1y3"; depends=[lmtest lubridate sandwich strucchange tsDyn urca vars xts]; }; - GWAF = derive2 { name="GWAF"; version="2.2"; sha256="11lk1dy24y1d0biihy2aypdvlx569lw1pfjs51m54rhgpwzkw6yd"; depends=[coxme geepack lme4]; }; GWASExactHW = derive2 { name="GWASExactHW"; version="1.01"; sha256="19qmk8h7kxmn9kzw0x4xns5p3qqz27xkqq4q6zmh4jzizd0fsl78"; depends=[]; }; GWASbyCluster = derive2 { name="GWASbyCluster"; version="0.1.7"; sha256="0ivlkxbh8m23vbnjfmhk0vfczd5b8lzy9w4gm1m6jpvdm40kn70x"; depends=[Biobase limma rootSolve snpStats]; }; GWASinlps = derive2 { name="GWASinlps"; version="1.2"; sha256="036lv8f58kz6qdwaviyk1q1qsgcj9cimipq1cjrfpn8snkn7s1gh"; depends=[horseshoe mombf speedglm]; }; - GWASinspector = derive2 { name="GWASinspector"; version="1.4.7"; sha256="0a75nh9hzhib2x5dg4598y3gyg7sflhdmj27j9hy2f5p03p4l64p"; depends=[data_table futile_logger ggplot2 gridExtra hash ini kableExtra knitr R_utils rmarkdown RSQLite]; }; + GWASinspector = derive2 { name="GWASinspector"; version="1.4.8"; sha256="00495z13r7z5yzpkc4vqqxidkk463n7xlz3mm8a4483zbk7p4l1x"; depends=[data_table futile_logger ggplot2 gridExtra hash ini kableExtra knitr R_utils rmarkdown RSQLite]; }; GWEX = derive2 { name="GWEX"; version="1.0.2"; sha256="0iykciifbskcrx1qv4874nxli1sq6nbmlfinq4ksir3p93y7ds87"; depends=[abind doParallel EnvStats fGarch foreach lmomco MASS mvtnorm nleqslv Renext]; }; GWG = derive2 { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; }; GWLelast = derive2 { name="GWLelast"; version="1.2.2"; sha256="1nm4w5m4ca6npmpvh9nb0cnrbzlyv95nvvhgs3pqcrw4igagm4hj"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; GWRM = derive2 { name="GWRM"; version="2.1.0.3"; sha256="16ahlf1pbcpgha50a7ml2c336by50r287kihwshiazshifi5p3n3"; depends=[doParallel foreach]; }; GWSDAT = derive2 { name="GWSDAT"; version="3.0.3"; sha256="10xvnnhqjs2p1r6yzflhkfi4985ljs57k5k8r6g85y2hq46m80p8"; depends=[deldir digest geometry Kendall lattice MASS Matrix officer readxl rhandsontable sf shiny shinycssloaders shinydashboard shinyjs sm sp splancs zoo]; }; - GWmodel = derive2 { name="GWmodel"; version="2.1-3"; sha256="1xha645sx73sy35s856qd4hd3y0n682bnrw0ahfzcr4fvzykc6iy"; depends=[FNN maptools Rcpp RcppArmadillo robustbase sp spacetime spatialreg spdep]; }; - GWnnegPCA = derive2 { name="GWnnegPCA"; version="0.0.1"; sha256="1fdlrdsqdg5gi7w3np7qcqdvxzgrvzj5bzqvh0d32ps59n8agsjy"; depends=[GWmodel nsprcomp sf sp]; }; + GWmodel = derive2 { name="GWmodel"; version="2.1-4"; sha256="13gm37b43m6i8j0qz4k7lv0myamap88s38fn6m664683bpw8il7h"; depends=[FNN maptools Rcpp RcppArmadillo robustbase sp spacetime spatialreg spdep]; }; + GWnnegPCA = derive2 { name="GWnnegPCA"; version="0.0.2"; sha256="0aa3lzzgbfy13fc19aq80dj09nwb1r6i2c8iarbhakyc75956npl"; depends=[GWmodel nsprcomp sf sp]; }; + GWpcor = derive2 { name="GWpcor"; version="0.1.2"; sha256="0gq7fjdry7wysx2x2amzvfz1fs7l0511incgdajyxxi9mls3wcp3"; depends=[corpcor doParallel dplyr foreach GWmodel sf sp]; }; GWsignif = derive2 { name="GWsignif"; version="1.2"; sha256="0bss5s3ijnlckz44p7jj49bn2r8nwqckpzwzcv0vci915q8jfsj2"; depends=[]; }; GaDiFPT = derive2 { name="GaDiFPT"; version="1.0"; sha256="15fnj1w30h0zdj032f3js0bbb1qlyk4b54a4aclykwzicqdgalkg"; depends=[]; }; GameTheory = derive2 { name="GameTheory"; version="2.7"; sha256="0vb7sjia5s58gw9zpkzddps8knxvbrz7fbi3m6digl8bf5vwhxxw"; depends=[combinat gtools ineq kappalab lpSolveAPI]; }; GameTheoryAllocation = derive2 { name="GameTheoryAllocation"; version="1.0"; sha256="0733vmyr0d9scjd5ixpnggr548snd7nj70knf5hbzc59nmbc5y11"; depends=[e1071 lpSolveAPI]; }; + Gammareg = derive2 { name="Gammareg"; version="3.0"; sha256="1wh5k3nazycki0h094m4d0nnign8yksgnrrnrm3yka1s7mqzv781"; depends=[]; }; + GapAnalysis = derive2 { name="GapAnalysis"; version="1.0.1"; sha256="0j39181iqi65sxi3isl3l42m9yvmwxhwz0pczvcrb45qfs9knh33"; depends=[data_table dataverse fasterize geosphere raster rmarkdown sf sp tmap]; }; GauPro = derive2 { name="GauPro"; version="0.2.2"; sha256="127agnhqbbavcf7sx0zq1c8ldh3w1d1iz5bpd1ixxkyaapmiq4qy"; depends=[lbfgs R6 Rcpp RcppArmadillo]; }; GaussianHMM1d = derive2 { name="GaussianHMM1d"; version="1.0.1"; sha256="1j1cwh0p7czy2l4qf6nymqcp8kkfaki0j2rj8p99nqn2vgc3vcax"; depends=[doParallel foreach]; }; GeDS = derive2 { name="GeDS"; version="0.1.3"; sha256="1ddq4hnyl3m3s4cchccxiqphi742ljcm86zqpa01a5nrjbnr87x6"; depends=[Matrix Rcpp Rmpfr]; }; GeNetIt = derive2 { name="GeNetIt"; version="0.1-4"; sha256="1z9h3prlf5r7ks0ys4wy0i5i3giaplqmngsqwxllsy70jjb9s90h"; depends=[exactextractr nlme raster rgeos sf sp spdep]; }; GenAlgo = derive2 { name="GenAlgo"; version="2.1.5"; sha256="0d3y9kc2njsbzdngv67d4qrdsnn7nsxph5acc09vmwxpv1cyhxiw"; depends=[ClassDiscovery MASS oompaBase]; }; - GenBinomApps = derive2 { name="GenBinomApps"; version="1.0-2"; sha256="1ps1rq8cjlwh658mysdh3xbn5fihanzcwxb38xvg4031vnwv80in"; depends=[]; }; - GenEst = derive2 { name="GenEst"; version="1.4.2"; sha256="0ljw1rlp686j7nkz11pqvmm0swb2ix0pkk5wc0z5hg4xic98vld8"; depends=[corpus DT gsl gtools hellno htmltools htmlwidgets lubridate MASS matrixStats mvtnorm Rcpp shiny shinyjs survival]; }; + GenBinomApps = derive2 { name="GenBinomApps"; version="1.1"; sha256="1w6k02bkawk7la7yjj8xby8w2a303gfk18xz08c7gka9a3m1lxqx"; depends=[]; }; + GenEst = derive2 { name="GenEst"; version="1.4.4"; sha256="17yqf3bd7cwkv3m2gk3zd5pf6jafps82x85qj2bpqp08ca6j6fli"; depends=[corpus DT gsl gtools hellno htmltools htmlwidgets lubridate MASS matrixStats mvtnorm Rcpp shiny shinyjs survival]; }; GenForImp = derive2 { name="GenForImp"; version="1.0"; sha256="1wcvi52fclcm6kknbjh4r9bpkc2rg8nk6cddnf5j8zqbvrwf4k5x"; depends=[mvtnorm sn]; }; GenKern = derive2 { name="GenKern"; version="1.2-60"; sha256="12qmd9ydizl7h178ndn25i4xscjnrssl5k7bifwv94m0wrgj4x6c"; depends=[KernSmooth]; }; GenOrd = derive2 { name="GenOrd"; version="1.4.0"; sha256="17mfrj1fwj8mri1w0bl2pw1rqriidmd67i7gpn9v56g9dzw5rzms"; depends=[MASS Matrix mvtnorm]; }; @@ -1677,7 +1737,7 @@ in with self; { GeneClusterNet = derive2 { name="GeneClusterNet"; version="1.0.1"; sha256="1xi4c041c4m39f9wb5fklgmhi6ng78iwzzqch5xk9hx5blq6zd4m"; depends=[G1DBN igraph MASS]; }; GeneCycle = derive2 { name="GeneCycle"; version="1.1.4"; sha256="0pivwfjz1plfhwz7k2c33k6p0pa1014d80qsrk8ig9yqqqlyhy1z"; depends=[fdrtool longitudinal MASS]; }; GeneF = derive2 { name="GeneF"; version="1.0"; sha256="0bizf47944b2zv9ayxb9rhrqx0ilz2xlvkw7x5vbg7l67y2g2l4d"; depends=[]; }; - GeneNet = derive2 { name="GeneNet"; version="1.2.14"; sha256="0cdhrj15rz0w0pyw3r8mikrzsdh95y5i1c0pa3cn0c2bjnjx3x3n"; depends=[corpcor fdrtool longitudinal]; }; + GeneNet = derive2 { name="GeneNet"; version="1.2.15"; sha256="11ba6ahsk3x9alvcw8bai2bpg84ki1m8nadrjjdhjg65svhw8njm"; depends=[corpcor fdrtool longitudinal]; }; GeneralOaxaca = derive2 { name="GeneralOaxaca"; version="1.0"; sha256="19j5c5xr6mdb6pmih94wbjas4yh0dmsqfggg8clvdxkpwk0h338v"; depends=[boot]; }; GeneralisedCovarianceMeasure = derive2 { name="GeneralisedCovarianceMeasure"; version="0.1.0"; sha256="02s1wbsdp5ma4pnmcsdl5dwm156zx12d3n1ypzkc33lxg21ashzj"; depends=[CVST kernlab mgcv xgboost]; }; GeneralizedHyperbolic = derive2 { name="GeneralizedHyperbolic"; version="0.8-4"; sha256="01gqfvmzfslhxdnigzbl3rd55hk6r0kgd8fm9xjl0kb9vmb735lm"; depends=[DistributionUtils MASS]; }; @@ -1692,41 +1752,42 @@ in with self; { GeoLight = derive2 { name="GeoLight"; version="2.0.0"; sha256="1i49hyj3f5rcw0s6j2csnfwc6mnp5zn44vxjnk05wdkpw6dpvx5i"; depends=[changepoint fields maps MASS]; }; GeoMongo = derive2 { name="GeoMongo"; version="1.0.1"; sha256="19wim724sgmxx9rd5yvmqdml0hppb92b8qvpl5zqrlnzxzm0ih5x"; depends=[data_table geojsonR R6 reticulate]; }; GeoRange = derive2 { name="GeoRange"; version="0.1.0"; sha256="0krj9570wkhdvpaqkq3nf0maglqd44mpwn4v1bymvgpk1i1wf5p3"; depends=[moments proj4 raster sp velociraptr]; }; - GeoTcgaData = derive2 { name="GeoTcgaData"; version="0.2.3"; sha256="0w53ng7q04wxc5ij1svck26liyy82z7vm8y0r19k9cjca0wjxi97"; depends=[data_table]; }; + GeoTcgaData = derive2 { name="GeoTcgaData"; version="0.2.4"; sha256="03m669vy0yj9rj524dkrgkqyhjzwc0xckm3zd1272a48jyc1jywd"; depends=[data_table]; }; GeomComb = derive2 { name="GeomComb"; version="1.0"; sha256="05xb6m2ciszxd13yhqdkildh9nsq19ss8885ngj6ynvbchqkii7r"; depends=[forecast ForecastCombinations ggplot2 Matrix mtsdi psych]; }; + GermaParl = derive2 { name="GermaParl"; version="1.5.1"; sha256="0mlzmjxnhql3691km3kr0b70g4hfxa7zhsfnndzdinrckzj5mn0w"; depends=[cwbtools zen4R]; }; GerminaR = derive2 { name="GerminaR"; version="1.4.2"; sha256="1sppkh42yj5p9kwlpiq3l1v720idbc9ni82m1hbdf9bg49h1gf3i"; depends=[agricolae assertthat dplyr DT ggplot2 gsheet gtools magrittr purrr readxl shiny shinydashboard tibble tidyr]; }; GetBCBData = derive2 { name="GetBCBData"; version="0.5"; sha256="1i5b5sawa8ngjp1afm1grm9hbmkhd5pcwqagkamlihsrmsvcdffn"; depends=[curl dplyr furrr future jsonlite lubridate memoise purrr RCurl readr stringr]; }; - GetDFPData = derive2 { name="GetDFPData"; version="1.5.2"; sha256="1xa1dy1lm4v2lch3qmfa990bx8r1qzch7jkpnydlnzmd0qmcbvb4"; depends=[curl dplyr lubridate readr reshape2 stringr tibble xlsx XML]; }; - GetHFData = derive2 { name="GetHFData"; version="1.7"; sha256="05xmr880n6arvpn6lb51yn9qssc8594rsxp6cinshk2jh6hq4fnj"; depends=[curl dplyr lubridate RCurl readr stringr]; }; + GetDFPData = derive2 { name="GetDFPData"; version="1.5.3"; sha256="1l2zhay8r16pwmprjmvk4agr0l1ysbvvf99abcihvd1i117ixarq"; depends=[curl dplyr lubridate readr reshape2 stringr tibble xlsx XML]; }; GetLattesData = derive2 { name="GetLattesData"; version="1.4"; sha256="129hnhmw8aw81whyj3g7npwgmg4fmvsji9h2xfg78nrp0abjxijv"; depends=[curl dplyr readr stringdist stringr XML]; }; GetQuandlData = derive2 { name="GetQuandlData"; version="0.1.0"; sha256="1g1as4m853ab1wp57rzqm0552g0vm7kxzypibv0xywc85084pnmc"; depends=[dplyr jsonlite memoise purrr readr scales stringr]; }; GetR = derive2 { name="GetR"; version="0.1"; sha256="1b2wirhz4nhvmf863czwb8z8b42ilsyjjrg9rc4nd9b7nz50bmjg"; depends=[party]; }; GetTDData = derive2 { name="GetTDData"; version="1.4.2"; sha256="1qz75hq1c89riq0jpzjkr9gbk5y7894kb0ydhdyji7kjl1kvgyvx"; depends=[bizdays curl RCurl readxl rvest stringi stringr tidyr XML xml2]; }; - GetoptLong = derive2 { name="GetoptLong"; version="0.1.8"; sha256="1l8xkvyl152bsyvxazsvx2sm1vkygn75x0lsg3sbg7xp6drdn3kc"; depends=[GlobalOptions rjson]; }; + GetoptLong = derive2 { name="GetoptLong"; version="1.0.2"; sha256="1p89v2qzqfxyrmqzkv245716n9i4bllnq77a6gw811mgdhxbd51l"; depends=[crayon GlobalOptions rjson]; }; Ghat = derive2 { name="Ghat"; version="0.1.0"; sha256="1w5agphnbngc0ldb3gbgh4b8ww956lf31bfyxw2zp56crx4akcxf"; depends=[rrBLUP]; }; Ghost = derive2 { name="Ghost"; version="0.1.0"; sha256="0anrb1n3f3jnq2p0dgqzw5a0gby2slafv2bybgy5gm3f9fsj831w"; depends=[R6]; }; + GiANT = derive2 { name="GiANT"; version="1.3"; sha256="01dzjlcbl6byqa1vxalhr6fpf2vczd38dn1q77c4jgcfz2a25wqz"; depends=[]; }; GiNA = derive2 { name="GiNA"; version="1.0.1"; sha256="0his7wsgnggyv9526blxzxa1ni8hwq2ws64wkmha45nvvnm3dsiw"; depends=[doParallel EBImage foreach png]; }; GiRaF = derive2 { name="GiRaF"; version="1.0"; sha256="02356cq0g6v5m72fy5z83bw3nsb7kpc9sy7sykk97735n928z92n"; depends=[BH Rcpp RcppArmadillo]; }; GibbsACOV = derive2 { name="GibbsACOV"; version="1.1"; sha256="1ikcdsf72sn1zgk527zmxw3zjhx0yvkal6dv001cgkv202842kll"; depends=[MASS]; }; Gifi = derive2 { name="Gifi"; version="0.3-9"; sha256="0rwyj60cldf3k118cnc5px16dc5p5bfxgl0w2m1lh6rsqlmza25a"; depends=[colorspace]; }; GillespieSSA = derive2 { name="GillespieSSA"; version="0.6.1"; sha256="0li0jqnbl9rfj8gbspq7fv327fii53rh93ffsxpic7804rmrnbi7"; depends=[]; }; - GillespieSSA2 = derive2 { name="GillespieSSA2"; version="0.2.6.1"; sha256="0nm9mdy537d2kza7x4bl6mvawgqpna4cva1xa0n9pcw70cc319nx"; depends=[assertthat dplyr dynutils Matrix purrr Rcpp RcppXPtrUtils readr rlang stringr tidyr]; }; + GillespieSSA2 = derive2 { name="GillespieSSA2"; version="0.2.7"; sha256="1kggacjfklzbclyncbxrlk97x0di2vfm2z9sl63hlfdn1vy3gvid"; depends=[assertthat dplyr dynutils Matrix purrr Rcpp RcppXPtrUtils readr rlang stringr tidyr]; }; GiniDistance = derive2 { name="GiniDistance"; version="0.1.0"; sha256="0jq1dwpsvh3k25lawvzf9ij72jsspzyqsbnrphz8aqwi1dkm3851"; depends=[energy randomForest Rcpp RcppArmadillo readxl]; }; GiniWegNeg = derive2 { name="GiniWegNeg"; version="1.0.1"; sha256="1wqwjalsyp55si839cil6na3khigm0mwn6qkg0kjylq10pabfk2a"; depends=[]; }; - GlmSimulatoR = derive2 { name="GlmSimulatoR"; version="0.2.1"; sha256="04zgjfzi1cbg7p0dv7f499yv9jf66w620kzrvxbx3yb6h5by6xz2"; depends=[assertthat cplm dplyr ggplot2 magrittr MASS purrr rlang statmod stringr tweedie]; }; + GlmSimulatoR = derive2 { name="GlmSimulatoR"; version="0.2.3"; sha256="05s4dhfv2vg2y0947c8p1hfy9dj0s3vr40gmk96l9jjglh742rsk"; depends=[assertthat cplm dplyr ggplot2 magrittr MASS purrr statmod stringr tweedie]; }; GlobalDeviance = derive2 { name="GlobalDeviance"; version="0.4"; sha256="0s318arq2kmn8fh0rd5hd1h9wmadr9q8yw8ramsjzvdc41bxqq1a"; depends=[snowfall]; }; GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; }; - GlobalOptions = derive2 { name="GlobalOptions"; version="0.1.1"; sha256="0x89hfz80avq4zcskxl71i4zi0mgniqqxfrvz050aa2189wfyja2"; depends=[]; }; + GlobalOptions = derive2 { name="GlobalOptions"; version="0.1.2"; sha256="0gkm77w6db9ajyncy1xdcivplap06a51zi99m009kylccschd2a7"; depends=[]; }; GmAMisc = derive2 { name="GmAMisc"; version="1.1.1"; sha256="0bvf5p779g8nn0wmna61jyns7wdjl0b0283r8b7m0s325mh6ckfv"; depends=[caTools classInt cluster coin corrplot DescTools dismo ggplot2 ggrepel gridExtra Hmisc InPosition kimisc lsr maptools plyr pROC raster RcmdrMisc rgdal rgeos sp spatstat]; }; Gmedian = derive2 { name="Gmedian"; version="1.2.5"; sha256="0xx8x4g6wb9djmkx3q1bwwa1vgf10avi6ka3x1jzgsxk6x0jsx0i"; depends=[Rcpp RcppArmadillo robustbase RSpectra]; }; - Gmisc = derive2 { name="Gmisc"; version="1.9.2"; sha256="08wkdaf2dyji7vkc0w4ay0f2pkll3psc1ap4rn7pdvfz2wlgs7c9"; depends=[abind checkmate forestplot Hmisc htmlTable knitr lattice magrittr Rcpp rmarkdown stringr XML]; }; + Gmisc = derive2 { name="Gmisc"; version="1.11.0"; sha256="1fyjyd75mk21y6nfjai1bg3g37sdz27w6vghhcr9zxhlcnwdb6id"; depends=[abind checkmate forestplot glue Hmisc htmlTable knitr lattice lubridate magrittr Rcpp rmarkdown stringr XML yaml]; }; GoFKernel = derive2 { name="GoFKernel"; version="2.1-1"; sha256="0xygsdmggl35fafyp431mkwalwixw2r3f32qll1pf72dfwd8y8d3"; depends=[KernSmooth]; }; GofKmt = derive2 { name="GofKmt"; version="2.1.1"; sha256="11dspnx1cljbbwk4xhg1l5vv2c8q24k294c122rdgc2zqp8k2c04"; depends=[ggplot2 Rcpp RcppArmadillo Rsolnp]; }; + GomoGomonoMi = derive2 { name="GomoGomonoMi"; version="0.1.0"; sha256="16kvf355yzpv0z2rndc5f50pxjnav6ld48j40vyip4h353wpwaks"; depends=[glue htmltools]; }; GoodmanKruskal = derive2 { name="GoodmanKruskal"; version="0.0.3"; sha256="1d0xkmkcfcwx0qs8m4b9dgrbkg1qpb859mmzg4d1rww8rc0wxh9h"; depends=[classInt corrplot]; }; GoogleKnowledgeGraphR = derive2 { name="GoogleKnowledgeGraphR"; version="0.1.0"; sha256="1jxiq1s48skn43pydsw8s67hf70v9fhhw2drcx9vni3c3szs44qd"; depends=[curl jsonlite]; }; - GpGp = derive2 { name="GpGp"; version="0.2.1"; sha256="0sa2xfharyy21mfcxl7hzgmaq3x8iz834mbbcfkqm5qf689i08yj"; depends=[FNN Rcpp RcppArmadillo]; }; + GpGp = derive2 { name="GpGp"; version="0.2.2"; sha256="03lkk4mi5d1gm3wz9ngvndzjylrgx76vlh8xjnm0wmd5y4ncbk8a"; depends=[FNN Rcpp RcppArmadillo]; }; Grace = derive2 { name="Grace"; version="0.5.3"; sha256="0r41zvgdd5rqm15axqqssik6plwy7snpgw8m32labkfn3f0pp7n0"; depends=[glmnet MASS scalreg]; }; - GrammR = derive2 { name="GrammR"; version="1.1.0"; sha256="1rwvgznfxp7d3rzymyljj3pn3z3ggia1bhi4nvpgd79qd4cifi2g"; depends=[ape cluster GUniFrac gWidgets gWidgetsRGtk2 MASS rgl RGtk2]; }; GraphPCA = derive2 { name="GraphPCA"; version="1.1"; sha256="0x6j3lyd70zc0c1al1407ma8crzi174d5dqkz6lx4vx24knrlhbs"; depends=[FactoMineR ggplot2 ggplot2movies scatterplot3d]; }; GrapheR = derive2 { name="GrapheR"; version="1.9-86"; sha256="1iizknyrpgiz1fh1fjls58n5v5fpki25j7kfbwfkp5ijf1q54ml6"; depends=[]; }; GrassmannOptim = derive2 { name="GrassmannOptim"; version="2.0"; sha256="05r5zg4kf3xd6pp56bl8ldchdxvspxkdfd33b623hndjhn4lj2lq"; depends=[Matrix]; }; @@ -1734,10 +1795,11 @@ in with self; { GreedyExperimentalDesign = derive2 { name="GreedyExperimentalDesign"; version="1.2"; sha256="1x3hnyqq75krlygg82qm0ldd8nsv071nzgr63zkjmifc7hgi0nvb"; depends=[GreedyExperimentalDesignJARs rJava]; }; GreedyExperimentalDesignJARs = derive2 { name="GreedyExperimentalDesignJARs"; version="1.0"; sha256="14i6m5qlh1fca9xmzid01hicd3bkf6rzl139ss78gvw544zrapw7"; depends=[rJava]; }; GreedySBTM = derive2 { name="GreedySBTM"; version="1.0"; sha256="1r29cd8nxpyc82rz2xb9mk9wc17gcdlcl9lw1j3y4npr2z0qhf13"; depends=[Rcpp RcppArmadillo]; }; - Greg = derive2 { name="Greg"; version="1.3.3"; sha256="1909lpsax1dwblrq0ab52vwz8iik9h8p5w2nmlsrwfwyv8018yha"; depends=[Epi forestplot Gmisc Hmisc htmlTable knitr magrittr nlme rms sandwich stringr]; }; + Greg = derive2 { name="Greg"; version="1.3.4"; sha256="1s46arnraj9xc98kxj0av64jjg0khxjrvgj1gjqz5f6bw2bxmkm3"; depends=[Epi forestplot Gmisc Hmisc htmlTable knitr magrittr nlme rms sandwich stringr]; }; GridOnClusters = derive2 { name="GridOnClusters"; version="0.0.7"; sha256="009h5yx81by6jscvibkxb2j5xi4wqarcrw0504yxdnmgi8w3khmr"; depends=[cluster dqrng fossil Rcpp]; }; GriegSmith = derive2 { name="GriegSmith"; version="1.0"; sha256="1a7gnaig1wvxpph7d8c37kx51dznzk0457fzf7alw95iwpyb4z7j"; depends=[spatstat]; }; GrimR = derive2 { name="GrimR"; version="0.5"; sha256="005ywc31yn1cs54kjlkrryw0s7zm8dqqfjkdlkm4s1sbc9r3mssz"; depends=[car]; }; + GroupBN = derive2 { name="GroupBN"; version="0.2.0"; sha256="0aql2ggcyrdpr02bq88xcnpq9jr33iawhwsdi93pzks94hvi8wwz"; depends=[arules bnlearn ClustOfVar magrittr MLmetrics PCAmixdata plyr PRROC rlist stringr visNetwork zoo]; }; GroupComparisons = derive2 { name="GroupComparisons"; version="0.1.0"; sha256="0fxgh1mksrfmd4yjrpxg3nfby5wyx75lj0shb5xrdzl7pxzh56ai"; depends=[car]; }; GroupSeq = derive2 { name="GroupSeq"; version="1.3.5"; sha256="0c74nlsqa5ly0kf6p4n7gfvd0ygkq78bx851ryniwpnnalvsq8l7"; depends=[]; }; GroupTest = derive2 { name="GroupTest"; version="1.0.1"; sha256="1v2230mw0irsr5y8n45g8sd362jp7f6dy2r532mhflfdqy6i2khs"; depends=[]; }; @@ -1747,7 +1809,7 @@ in with self; { Guerry = derive2 { name="Guerry"; version="1.7.0"; sha256="0r92xs1ps48yznc146gqmdvz47zvlqfb14yz2ys8bjlk0wna9agv"; depends=[sp]; }; GuessCompx = derive2 { name="GuessCompx"; version="1.0.3"; sha256="1xbkh1wh2z0n964w8lwi7q4rr7mls0awf5k7n5jjklhq4b6gswic"; depends=[boot dplyr ggplot2 lubridate reshape2]; }; GxM = derive2 { name="GxM"; version="1.1"; sha256="02rv8qb46ylk22iqn9cgh63vkyrg9a8nr1d0d3j5hqhi0wyhc41r"; depends=[minqa nlme Rcpp]; }; - HAC = derive2 { name="HAC"; version="1.0-6"; sha256="1cdh3s8nm17mfjj0zdxzhlmakcd0m12xfjx0b4gyx24xkahklr8i"; depends=[copula numDeriv]; }; + HAC = derive2 { name="HAC"; version="1.0-7"; sha256="066d0hrhqx3m7ksc136r12wfwscbhj2wi0ibgrsqqbgkpdd9fc8g"; depends=[copula numDeriv]; }; HACSim = derive2 { name="HACSim"; version="1.0.5"; sha256="0161h3yhi3bh0jq7x105p3rjlrvl46k4iahfz4k84wsvw3akgk1a"; depends=[ape pegas Rcpp RcppArmadillo]; }; HAPim = derive2 { name="HAPim"; version="1.3"; sha256="03qy0pxazv3gdq3fck7171ixilb9zi1dwnvc4v7d726g0lvn80pg"; depends=[]; }; HARModel = derive2 { name="HARModel"; version="1.0"; sha256="17sajqi2g5z69gvnfhkn850jkavi8syhm58xadd2khrm73nvwh2i"; depends=[Rcpp RcppArmadillo sandwich xts zoo]; }; @@ -1764,14 +1826,15 @@ in with self; { HDCurves = derive2 { name="HDCurves"; version="0.1.0"; sha256="1ifcbwcqgdxicqxcqrsl9kp3zadxhijpwff8ln309378vybr3gh1"; depends=[]; }; HDDesign = derive2 { name="HDDesign"; version="1.1"; sha256="1jim4h9bwn8r637va7m81kwwsfwyzs9pzn5a9i7c8xz8b1x191bj"; depends=[]; }; HDGLM = derive2 { name="HDGLM"; version="0.1"; sha256="0a5lnh3780lsczj8339sp97c5y64a2gsdf77i56fvpxpphq0dnf8"; depends=[]; }; - HDInterval = derive2 { name="HDInterval"; version="0.2.0"; sha256="1y51q0dwav3x7c0vp571v89vq1a5mivsxsyahqrv1la12zw0m7il"; depends=[]; }; + HDInterval = derive2 { name="HDInterval"; version="0.2.2"; sha256="1vb5fn9zfig0jqs3mvkpik4wvrndj4qmxqx8rg0iv8nvqc4fnzh4"; depends=[]; }; + HDLSSkST = derive2 { name="HDLSSkST"; version="1.0.1"; sha256="1rslx3zxqh0byi6g4a446v3pagn174ibn115wd3dncpm8gka6q7s"; depends=[Rcpp]; }; HDMD = derive2 { name="HDMD"; version="1.2"; sha256="0na0z08fdf47ghfl2r3fp9qg5pi99kvp7liymwxym2wglkwl4chq"; depends=[MASS psych]; }; HDMT = derive2 { name="HDMT"; version="1.0.1"; sha256="0wqaz3h1xdzfcgn4gp1x8ini6a836fxwm7izxgjf7r5y48cnl5z7"; depends=[cp4p fdrtool]; }; HDPenReg = derive2 { name="HDPenReg"; version="0.94.6"; sha256="08kjyr0lkc0x5hky0i11n6x4dm9az8lbs79c0lmz32qrf9rhayg9"; depends=[Matrix Rcpp rtkore]; }; HDclassif = derive2 { name="HDclassif"; version="2.2.0"; sha256="1l5zxhayhzh7q50ycl481hy0br66ylxyvzw1ahmjjrdkm8s3czyj"; depends=[MASS rARPACK]; }; HDclust = derive2 { name="HDclust"; version="1.0.3"; sha256="18l4qp261gj3kscfxs3s03kmb9y5ml31vnpgpm1iy125bks4mr2y"; depends=[Rcpp RcppProgress Rtsne]; }; HDcpDetect = derive2 { name="HDcpDetect"; version="0.1.0"; sha256="0ai35d9df5pmva52sb1rr20f11h0mbal6d179g865b7w6n90kfr1"; depends=[]; }; - HDoutliers = derive2 { name="HDoutliers"; version="1.0.1"; sha256="1h41x13lkvzxs6lswzdwc4zs1z8flrf1qq8cr16xjf1azqk00ac2"; depends=[FactoMineR FNN mclust]; }; + HDoutliers = derive2 { name="HDoutliers"; version="1.0.2"; sha256="13dwshjrz17wv8hn10sjii4caxs771w666mvk0fg831d4afj5bdc"; depends=[FactoMineR FNN mclust]; }; HDtest = derive2 { name="HDtest"; version="2.1"; sha256="1c9x4s59762sp7drbm5h1xv22kpifq7p0x3dkrfcd0ficbbma5v8"; depends=[checkmate clime doParallel expm fastclime foreach MASS mvtnorm]; }; HDtweedie = derive2 { name="HDtweedie"; version="1.1"; sha256="14awd7sws0464f68f5xwnv1xvr0xflvx2z2zzcfj1csvk3af0zzj"; depends=[]; }; HEMDAG = derive2 { name="HEMDAG"; version="2.6.1"; sha256="138byk1vzkw9g58ml3vf2ivj0bdanj8klqv0y8s7af3s5swlis18"; depends=[doParallel foreach graph plyr precrec preprocessCore RBGL]; }; @@ -1788,52 +1851,52 @@ in with self; { HKprocess = derive2 { name="HKprocess"; version="0.0-2"; sha256="1j2yhb7k8zf4nlzdf0p6x9ca7ak4lwwak8mcc60kpilw2fws27k5"; depends=[gtools MCMCpack]; }; HLMdiag = derive2 { name="HLMdiag"; version="0.3.1"; sha256="02pgvfyj3xpy7laxryqivsws8jl3m79fwfzpqj8ad794a06gh87g"; depends=[ggplot2 MASS Matrix mgcv plyr Rcpp RcppArmadillo reshape2 RLRsim]; }; HLSM = derive2 { name="HLSM"; version="0.8.2"; sha256="1jqfk5mlx603s3v069dab7wm0wy8qil50rw1s5x6f21xrahaqks2"; depends=[abind coda igraph MASS]; }; - HMB = derive2 { name="HMB"; version="1.0"; sha256="1a4h2d82hglv13q9mq98i67k1x9mkaf4bm2hr9dl3z0q6x0piwqr"; depends=[Rcpp RcppArmadillo]; }; + HMB = derive2 { name="HMB"; version="1.1"; sha256="19z3d0b98fyjcnbxh3g6h2g927nv0408sbxjlzalrjlw9mbpzd2b"; depends=[Rcpp RcppArmadillo]; }; HMDHFDplus = derive2 { name="HMDHFDplus"; version="1.9.13"; sha256="1n507nsqz1blikci56jhp48rdpq38dnadh8warc2jmvwizl22a3b"; depends=[httr RCurl XML]; }; HMM = derive2 { name="HMM"; version="1.0"; sha256="0z0hcqfixx1l2a6d3lpy5hmh0n4gjgs0jnck441akpp3vh37glzw"; depends=[]; }; HMMCont = derive2 { name="HMMCont"; version="1.0"; sha256="1drni4f72x83sprn65wnhw0pv1q8lfkgmxdr9h4rwv1accril85x"; depends=[]; }; HMMEsolver = derive2 { name="HMMEsolver"; version="0.1.2"; sha256="0msin7rq3npz221mvrw3zcs6bwz439six99iblx5p3hkp1n1ljf3"; depends=[Rcpp RcppArmadillo Rdpack]; }; HMMcopula = derive2 { name="HMMcopula"; version="1.0.4"; sha256="1gmvav02r3miaq4jx05qjcgzw5qv6w1j77vck5gpps8p38zcp34m"; depends=[copula doParallel foreach matrixcalc mvtnorm]; }; HMMextra0s = derive2 { name="HMMextra0s"; version="1.0.0"; sha256="15y5q92x69sn80pc2x7xwbnsfrqpf7cjdja4hkq861jshkksbmg1"; depends=[ellipse mvtnorm]; }; - HMMmlselect = derive2 { name="HMMmlselect"; version="0.1.5"; sha256="10h62h03hiip8m1h93sbln413l6cmxmc6hsq3rla6acjk6hfxb2v"; depends=[DirichletReg HiddenMarkov mclust mvtnorm Rcpp]; }; + HMMmlselect = derive2 { name="HMMmlselect"; version="0.1.6"; sha256="0kvw9nihbmvp19hbz5h8sz9jps5ik2di969jxdbp4ymj735c0fc9"; depends=[HiddenMarkov mclust MCMCpack mvtnorm Rcpp]; }; HMMpa = derive2 { name="HMMpa"; version="1.0.1"; sha256="0c3jmvcklywqsjmskx7zbw4d3l8i6bzr5h741v8iwgyw67mjn37g"; depends=[]; }; HMP = derive2 { name="HMP"; version="2.0.1"; sha256="0233p7gajr2aic0c5snni4g9v1bwn4zd5i3kagxhqxa3mvy5c7wc"; depends=[dirmult doParallel foreach ggplot2 gplots lattice MASS rpart rpart_plot vegan]; }; HMPTrees = derive2 { name="HMPTrees"; version="1.4"; sha256="1jha64iyb0816rdg2i3z7i31z02r72k6acmvw0ibw3sli8zcvphb"; depends=[ape dirmult doParallel foreach HMP]; }; - HMR = derive2 { name="HMR"; version="1.0.0"; sha256="128q3d8r3z9gwnhqszwj8z0kf4la7szkwd11a6x0yhglmyrs1905"; depends=[]; }; + HMR = derive2 { name="HMR"; version="1.0.1"; sha256="1ym8i39nnjs1lijqv9gdm1lvys6vbrv4zhwy8pvdazb83xdncsih"; depends=[]; }; HMVD = derive2 { name="HMVD"; version="1.0"; sha256="0agzvsl2n3zg3i519b93jqpiq9zix0bbrjdzk3ymsbb42dzkmj0d"; depends=[MASS]; }; + HPLB = derive2 { name="HPLB"; version="1.0.0"; sha256="1xxckjz90sdmng0sm9dlhwpzj79pxa3vd1cidxc44wjk4h25rq7q"; depends=[data_table]; }; HPbayes = derive2 { name="HPbayes"; version="0.1"; sha256="1kpqnv7ymf95sgb0ik7npc4qfkzc1zb483vwnjpba4f42jhf508y"; depends=[boot corpcor MASS mvtnorm numDeriv]; }; HRM = derive2 { name="HRM"; version="1.2.1"; sha256="0qsxwi0v61k1waw21nrz86jazd5wgq2drhan3w8pmb35q2z20s35"; depends=[data_table doBy ggplot2 MASS matrixcalc mvtnorm plyr pseudorank Rcpp reshape2 xtable]; }; HRW = derive2 { name="HRW"; version="1.0-3"; sha256="12y43sl30949jc9ab10ipx8k4rvb9g8gwaazi8j3k1grh26ivpii"; depends=[KernSmooth]; }; HS = derive2 { name="HS"; version="1.1"; sha256="1vhbchc446j49jj7jgmy4l59n8ahk5l8jp1rl5xwsmn9iqir62mp"; depends=[data_table ggplot2 ggpubr partitions reshape2 tidyr zoo]; }; + HSAR = derive2 { name="HSAR"; version="0.5.1"; sha256="03ryscvgiiwjcqk6gy3251nqqk43x508kz3ibw35hi84m2s7fsxj"; depends=[Rcpp RcppArmadillo spatialreg spdep]; }; HSAUR = derive2 { name="HSAUR"; version="1.3-9"; sha256="0b2hyn59lr2pma87fcj7mli3qmrbnfhgd8fv02fa317rj52399qz"; depends=[]; }; HSAUR2 = derive2 { name="HSAUR2"; version="1.1-17"; sha256="0jc554lz5lj7180vd4rbrjkywar4bh38c7i9kyxhd5clg4afxpw8"; depends=[]; }; HSAUR3 = derive2 { name="HSAUR3"; version="1.0-9"; sha256="1rpvblak0xvkavbvbd35zq1lcsl5z1zp30vn70wqbkdj7szhj9b4"; depends=[]; }; HSDiC = derive2 { name="HSDiC"; version="0.1"; sha256="0wiixb1ylx0l8qfgh5ark6alkdq87xaak1jlxizw1m589vghvqfp"; depends=[glmnet Matrix ncvreg quadprog]; }; HSPOR = derive2 { name="HSPOR"; version="1.1.9"; sha256="06lr8l71y5fcqcnmgq7cgiab1pcc98wnqzndbxcbikbh33cx7nxv"; depends=[corpcor npregfast]; }; - HSROC = derive2 { name="HSROC"; version="2.1.9"; sha256="0x5q115c1js5l4rvdy8fg52kcgl18aj1snlj0gi1fdvjsxvglxjl"; depends=[coda lattice MASS MCMCpack]; }; HSSVD = derive2 { name="HSSVD"; version="1.2"; sha256="1k7ga397grl0r4p0ipjgw5xlafb2528rpww67bw7mmy01w87a1cc"; depends=[bcv]; }; HTLR = derive2 { name="HTLR"; version="0.4-2"; sha256="1q8zlb4iya0sq2jqp4m77v66hdrfc7ncc0k8qllf16h06k24s88x"; depends=[BCBCSF glmnet magrittr Rcpp RcppArmadillo]; }; HTMLUtils = derive2 { name="HTMLUtils"; version="0.1.7"; sha256="05y505jazzahnd6jsp3plqz8hd75991hhhcpcdn8093rinb1f8l1"; depends=[R2HTML]; }; HTSCluster = derive2 { name="HTSCluster"; version="2.0.8"; sha256="0wnbfh6hdx8692jilgmv8sys1zm6fqc6mim7vvjhyqlmpm8gm0kg"; depends=[capushe edgeR plotrix]; }; HTSSIP = derive2 { name="HTSSIP"; version="1.4.1"; sha256="1j2f6f3i4di4bvsk44gxz0narg45ld2rahfn23wpgni5bszy0vb3"; depends=[ape coenocliner DESeq2 dplyr ggplot2 igraph lazyeval magrittr phyloseq plyr stringr tidyr vegan]; }; HUM = derive2 { name="HUM"; version="1.0"; sha256="1bq74l88jvscmq9ihv5wn06w2wng073ybvqb2bdx2dmiqlpv6jw2"; depends=[gtools Rcpp rgl]; }; - HURDAT = derive2 { name="HURDAT"; version="0.2.3.1"; sha256="0k80bll26wxn902m7p7va7f9xk5kbwkf538jvdw8qdlz5a77a2aa"; depends=[dplyr purrr readr rlang rvest tidyr xml2]; }; HW_pval = derive2 { name="HW.pval"; version="1.0"; sha256="14nmyqw2d9cmn64789yc54fmiqanh6n1dizp7vj94h7b0jwq63yy"; depends=[]; }; HWEBayes = derive2 { name="HWEBayes"; version="1.4"; sha256="1rbffx6pn031a278ps9aqxcaq8yi73s5kf60za143ysbfxv9dphw"; depends=[MCMCpack mvtnorm]; }; HWEintrinsic = derive2 { name="HWEintrinsic"; version="1.2.2"; sha256="035r5bi7m66g351cmrfmf4cj5qqm4fn5pgy3lzsp3gyp2dv0rkg5"; depends=[]; }; HYRISK = derive2 { name="HYRISK"; version="1.2"; sha256="1ngwwzv1pavmscpca3ryzfxzd9rppsh0sm7k4sp2kzc9c0bix4xp"; depends=[kerdiest pbapply reliaR rgenoud sets triangle]; }; - HaDeX = derive2 { name="HaDeX"; version="1.1"; sha256="1c87bj4qiq28a51l90r5rhk9nzn8lgssby686fsin0d3y068krbg"; depends=[data_table dplyr DT ggplot2 gsubfn latex2exp readr readxl reshape2 shiny stringr tidyr]; }; + HaDeX = derive2 { name="HaDeX"; version="1.2.1"; sha256="0y380z92blxq52hg20cw71g6vs962xpgk5x2mvl35sz27lm4fr4f"; depends=[data_table dplyr DT ggplot2 gsubfn latex2exp readr readxl reshape2 shiny stringr tidyr]; }; HadamardR = derive2 { name="HadamardR"; version="1.0.0"; sha256="0nr8m6fchpmlvhyisb61y0fymjjrk2k1sd67r14n87sgn3mafh4a"; depends=[numbers openxlsx]; }; HadoopStreaming = derive2 { name="HadoopStreaming"; version="0.2"; sha256="1l9msaizjvnsj1jrpghj4g057qifdgg6vbqhfxhn1fiqdqi2056q"; depends=[getopt]; }; HandTill2001 = derive2 { name="HandTill2001"; version="1.0.0"; sha256="0qxaxwizx24gm3iycdmwdn8mqvnwnjhacsp9nwl9w4djayb5a9sg"; depends=[]; }; Hapi = derive2 { name="Hapi"; version="0.0.3"; sha256="0jqjhfq38k161kqff5cx0vxpsmjm2y5ca7049mvqiwqwvi4fp08m"; depends=[ggplot2 HMM]; }; Haplin = derive2 { name="Haplin"; version="7.2.2"; sha256="15q0p563qbf0v91hnx3bdcxwc7chcqzc507wmr5zrsdl8y2pqn40"; depends=[ff ffbase MASS mgcv rlang]; }; HaploSim = derive2 { name="HaploSim"; version="1.8.4"; sha256="0794f76hc9qvjmay7c61cmzycqafljs0g0hliq9xfrw4f23gq3sa"; depends=[]; }; - HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.6.3"; sha256="1irz44q6nf95h37av868f47aakwv3jgwgw217xfsfw0afkm7s25f"; depends=[mice Rcpp Rsolnp]; }; + HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.6.6"; sha256="1qn1bbzfk4w3mqrzisshw5xx7x249sgmj6qdi39lkqb58a4mf4kh"; depends=[mice Rcpp Rsolnp]; }; HarmonicRegression = derive2 { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; }; Harvest_Tree = derive2 { name="Harvest.Tree"; version="1.1"; sha256="021zmppy7p2iakaxirfjdb5jzakg1ijma9d25ly2ni0nx0p1mh6z"; depends=[rpart]; }; - HellCor = derive2 { name="HellCor"; version="1.2"; sha256="1k7k8gj70wc31w27gykiy0fv2bs9q73414ma0hn3ziqg4cnrgl7m"; depends=[energy]; }; - HelpersMG = derive2 { name="HelpersMG"; version="4.0"; sha256="18rv27xmvalhmshc847yq63srym0k7x352y1m033qpy5j0fjrijz"; depends=[coda lme4]; }; + HellCor = derive2 { name="HellCor"; version="1.3"; sha256="1bzc2ipm7vw7s849d43lcs0xrk2rs67h223dn9kahqg152mmknza"; depends=[energy FNN orthopolynom]; }; + HelpersMG = derive2 { name="HelpersMG"; version="4.3"; sha256="0kgsvzwya6r1zhzy0mwjdm41hpxssyd2qn16bcmpxkdd3njbk4bs"; depends=[coda lme4]; }; HeritSeq = derive2 { name="HeritSeq"; version="1.0.1"; sha256="0l1saxwj99xwkzcy43v0k9sicqwpw9gc8ywxpablagcddfj05pi3"; depends=[cplm DESeq2 lme4 MASS pbapply SummarizedExperiment tweedie]; }; HextractoR = derive2 { name="HextractoR"; version="1.4"; sha256="1wp7n92wgrjyklq159ymrw8y5ads6lhj2fcz54rzdnccdyx5naxi"; depends=[doParallel foreach seqinr]; }; HiCfeat = derive2 { name="HiCfeat"; version="1.4"; sha256="1imz7zfax74aakzk8457jww9r66qxpr2ncyvjj0y5paxdn76lnnq"; depends=[GenomeInfoDb GenomicRanges glmnet IRanges Matrix rtracklayer]; }; @@ -1850,8 +1913,8 @@ in with self; { HistDAWass = derive2 { name="HistDAWass"; version="1.0.4"; sha256="18l9hjkdcwk1lh19z240s9rqg49v9gpydllcaa5jndysylx8ybjr"; depends=[class FactoMineR ggplot2 ggridges histogram Rcpp RcppArmadillo]; }; HistData = derive2 { name="HistData"; version="0.8-6"; sha256="0an8cki2ahaf3ynbcqgikxi90l3bv7gcn6nnwnli9g1br89y3bd4"; depends=[]; }; HistogramTools = derive2 { name="HistogramTools"; version="0.3.2"; sha256="1wkv6ypn006d8j6bpbhc1knw0bky4y8r7jp87482yd19q5ljsgv0"; depends=[ash Hmisc stringr]; }; - HiveR = derive2 { name="HiveR"; version="0.3.42"; sha256="09h061511pk7iy1k9gb3ifa5q6gd17ix9sn2fshl6gp5sxnysn4f"; depends=[jpeg plyr png RColorBrewer rgl tkrgl]; }; - Hmisc = derive2 { name="Hmisc"; version="4.4-0"; sha256="1ivfamwghd2z408fkhs7jy5zl3q0z1a2la16yi8js872br6cyvpi"; depends=[acepack base64enc cluster data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools lattice latticeExtra nnet rpart survival viridis]; }; + HiveR = derive2 { name="HiveR"; version="0.3.63"; sha256="1vi24k23a017czfy9kihmq4s1dywzm274dyhyp1imx94afsnmhc3"; depends=[jpeg plyr png RColorBrewer rgl]; }; + Hmisc = derive2 { name="Hmisc"; version="4.4-1"; sha256="0mm3r2kv0kgrhg7salk2hw0s37d4i2mghwk0l0qxaw2ny0w8w5z6"; depends=[base64enc cluster data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools lattice latticeExtra nnet rpart survival viridis]; }; Hmsc = derive2 { name="Hmsc"; version="3.0-6"; sha256="1n02akdrz4g33aqwigbh9ckdplxvgnzsznwlyx6j40s4rqgv2zrz"; depends=[abind ape BayesLogit coda fields FNN ggplot2 MASS Matrix MCMCpack mvtnorm nnet pdist pROC rlang statmod truncnorm]; }; HoRM = derive2 { name="HoRM"; version="0.1.2"; sha256="0vfsya6423i25szdj5s8pa8pwshiqykikxdbbj7r2nz73x3qp6hy"; depends=[ggplot2 MASS orthopolynom quantmod rsm]; }; Holidays = derive2 { name="Holidays"; version="1.0-7"; sha256="1srfbhlrf0pd6gzhp4hbic555lb7camk084rn1qz2g7fjvyijqiq"; depends=[TimeWarp]; }; @@ -1859,19 +1922,17 @@ in with self; { Hotelling = derive2 { name="Hotelling"; version="1.0-5"; sha256="1ism2lzi2kmi62gp319qsi64pj2kj5sfh50f1qnv8vgdkb76bdx5"; depends=[corpcor]; }; HyPhy = derive2 { name="HyPhy"; version="1.0"; sha256="0994ymv7sswbp8qw3pay34s926cflw2hq2gnchw7rknybvlsrinq"; depends=[ape R_utils]; }; HyRiM = derive2 { name="HyRiM"; version="2.0.0"; sha256="1wif31xvrwz0dr6z0hfn1v2fxi8rxws52al6h9rlbzciy6xyl7a3"; depends=[compare grImport2 orthopolynom purrr Rglpk]; }; - HybridFS = derive2 { name="HybridFS"; version="0.1.3"; sha256="0sb3i8ymgydi9hvxzdzydqap1gd7w5qcrs9clc0y5n26zd2mwqm5"; depends=[caTools FSelector InformationValue ROCR woeBinning]; }; HybridMC = derive2 { name="HybridMC"; version="0.2"; sha256="1wgzfyk0scwq9s2sdmc91fj7r4d7zlgwgnj6mdiia8w88ja8kzqy"; depends=[coda]; }; - HydeNet = derive2 { name="HydeNet"; version="0.10.9"; sha256="1glzbr91cwp99qk1cyf8824fg8jvghgf84gc64jjn2q70vczcf5f"; depends=[checkmate DiagrammeR dplyr magrittr nnet pixiedust plyr rjags stringr]; }; + HydeNet = derive2 { name="HydeNet"; version="0.10.11"; sha256="1qi87k2drizqba1nz8psh697ks8ai8xz492kzsrs76xlxpbk1i9k"; depends=[checkmate DiagrammeR dplyr graph magrittr nnet pixiedust plyr rjags stringr]; }; HydroCode = derive2 { name="HydroCode"; version="1.0.1"; sha256="0093a19d52pvy5f0c8l8vxix0kni2c6ablqsfxflwwg9wbms81pa"; depends=[sp]; }; HydroMe = derive2 { name="HydroMe"; version="2.0"; sha256="1a1d3lay94mzwk8n22l650h3p133npdf4aj63zgrdw4760p54rqf"; depends=[minpack_lm nlme]; }; HyperbolicDist = derive2 { name="HyperbolicDist"; version="0.6-2"; sha256="1wgqbx9ascyk6gw1dmvfz6hljvbh49gb9shr9qgf22qbq83waiva"; depends=[]; }; HypergeoMat = derive2 { name="HypergeoMat"; version="3.0.0"; sha256="03xnvb7d80nak7wawfi2sniq9syjbjx5gk71xsgchgwqsdnixp8y"; depends=[gsl Rcpp RcppArmadillo]; }; - IAPWS95 = derive2 { name="IAPWS95"; version="1.1.0"; sha256="03kggkcyvbgh7l9haa1ljg0sv6f2rs06r6j0w2x7cpm31qmc3yzl"; depends=[ggplot2 pander Rcpp]; }; IASD = derive2 { name="IASD"; version="1.1"; sha256="1slhd42k639mbyxccl7n69p7ng2qx6pqag8wz3kdwn479spkavzn"; depends=[]; }; IAT = derive2 { name="IAT"; version="0.3"; sha256="110rn2q09gspfd4msyh30dllxdxdraffkr18h1nm72brzhmx9cfi"; depends=[dplyr ggplot2 lazyeval]; }; IATScore = derive2 { name="IATScore"; version="0.1.1"; sha256="0sg4apj1sp0xc311cbkvflhv9kw1jxvjhdr0xjw79s662mnhkhgz"; depends=[]; }; IATanalytics = derive2 { name="IATanalytics"; version="0.1.1"; sha256="10g9iscfjmlxrkzls9320h9azpc5fnhh6276p7zn8sxqgp1nvnz9"; depends=[]; }; - IATscores = derive2 { name="IATscores"; version="0.2.4"; sha256="1svg6d86m17ijq4mqffycq6vi3hx09kfnijjka1jq4wavrrd2jzy"; depends=[dplyr qgraph reshape2 stringr]; }; + IATscores = derive2 { name="IATscores"; version="0.2.7"; sha256="1dmcwkylq6zazjycjsmbxnzvkav19w13j69gnm1f558wsdxpvhx1"; depends=[dplyr qgraph reshape2 stringr]; }; IAbin = derive2 { name="IAbin"; version="1.0"; sha256="1cpj2mx72n4v0yd8jbbnhj2w5d0sc8pw7rc8ahnn1hfa38pwwsyx"; depends=[]; }; IBCF_MTME = derive2 { name="IBCF.MTME"; version="1.6-0"; sha256="1nlfsfdw8lfr3n2717i6kn1hafwr6hmqzfpg249amlrfjn0pghji"; depends=[dplyr lsa tidyr]; }; IBDLabels = derive2 { name="IBDLabels"; version="1.1"; sha256="1m9fd058yjxva6hin7i72i2nl285wfm0jkdn5xcng27yqlijyrm9"; depends=[]; }; @@ -1881,7 +1942,7 @@ in with self; { IC2 = derive2 { name="IC2"; version="1.0-1"; sha256="03jjb62msxjxdg9l3zd1ns0d2w37hkxy5pnjgaywxw3vfk4zwfj9"; depends=[]; }; ICAFF = derive2 { name="ICAFF"; version="1.0.1"; sha256="0zazx4nv81s75appg10aayks04mx6m5n9yf5hqrbxh3yj68vzxfy"; depends=[]; }; ICAMS = derive2 { name="ICAMS"; version="2.1.2"; sha256="0jgylkc3asg41b0vac5vcyril0n93yqijjbzwwprfh3ps7pq87s0"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges IRanges RColorBrewer stringi zip]; }; - ICAOD = derive2 { name="ICAOD"; version="0.9.9"; sha256="04s51rxhr4axxr1rnhnq87lcn9mjj8g18xr35awnmc4sjg2aavaf"; depends=[cubature mnormt mvQuad nloptr Rcpp RcppEigen sn]; }; + ICAOD = derive2 { name="ICAOD"; version="1.0.0"; sha256="0gcq4f5pa6sa9850968mr275z2n7xfzlsy12d4khkq9ysd2b6y5p"; depends=[cubature mnormt mvQuad nloptr Rcpp RcppEigen sn]; }; ICBayes = derive2 { name="ICBayes"; version="1.2"; sha256="1hdh7g4nk6yy0xz9564vpvh1blrw30lvyw2wc5mmgn78kwjqla34"; depends=[coda HI survival]; }; ICC = derive2 { name="ICC"; version="2.3.0"; sha256="0y8zh9715cp9bglxpygqwgigrarq37sj845lk1xl0ydwinl0a6kk"; depends=[]; }; ICC_Sample_Size = derive2 { name="ICC.Sample.Size"; version="1.0"; sha256="1w6v1jp8bfvf6c49ikswkc5527gdx5cyqnw95x00pgmm6riwlsp9"; depends=[]; }; @@ -1894,11 +1955,12 @@ in with self; { ICGE = derive2 { name="ICGE"; version="0.3"; sha256="0xin7zml1nbygyi08hhg3wwr2jr1zcsvrlgia89zp4xanxlzgaqa"; depends=[cluster MASS]; }; ICGOR = derive2 { name="ICGOR"; version="2.0"; sha256="18fn10f5nqqbrfibqmp602nqpx794fy3gpxp1bd10xn48llhqfc4"; depends=[ICsurv MASS pracma survival]; }; ICODS = derive2 { name="ICODS"; version="1.0"; sha256="13wi4mqdwdrjfjh42sjifc6vlkj6jlm4z0x6680xdzkwq8byipi9"; depends=[MASS]; }; - ICON = derive2 { name="ICON"; version="0.1.0"; sha256="0l0zwsb6r70b93qd1x0r7zp36w3yj4gjl3z5v3jm1w3dbk9jgq95"; depends=[]; }; + ICON = derive2 { name="ICON"; version="0.2.0"; sha256="1g8lffp66h3pl6qjbns6427ms696ikhnr48c3qs61isir93x9hvf"; depends=[]; }; ICRanks = derive2 { name="ICRanks"; version="3.1"; sha256="1vwzqkjg7i5hm96s8frp72n6xqadlsawzr1wby1fhsxl2m5f1797"; depends=[gmp multcomp Rcpp]; }; ICS = derive2 { name="ICS"; version="1.3-1"; sha256="0x3cwhvzcibgyb8gqy6dc6lgnvbf6x8425zai57g8yn5i6zzc1li"; depends=[mvtnorm survey]; }; ICSNP = derive2 { name="ICSNP"; version="1.1-1"; sha256="1zf0k1kwdmjjqsbiiy3r2l47vjsrg09fj65p6zfld3j4gjbp17fd"; depends=[ICS mvtnorm]; }; ICSOutlier = derive2 { name="ICSOutlier"; version="0.3-0"; sha256="1vj1y4zw8pkghkg4qnmx0yk1yw4zzl9075n5czrna9ckk2p29fmh"; depends=[ICS moments mvtnorm]; }; + ICSS = derive2 { name="ICSS"; version="1.0"; sha256="1cwpz5bdksq086y195mmvpjmbaama0nwqjfqnls5xq7mwq15nb4s"; depends=[rstack]; }; ICSShiny = derive2 { name="ICSShiny"; version="0.5"; sha256="0a13vps0mkv5qs6qnl7ar0mdbkbd7i1c6kgwahmkb3id3n9bw0cl"; depends=[DT ICS ICSNP ICSOutlier rrcov shiny simsalapar]; }; ICV = derive2 { name="ICV"; version="1.0"; sha256="1na87i39jy5d8ibldqcqz3a072ihkgcl0k629sxch9hk6v6j5lly"; depends=[]; }; ICcalib = derive2 { name="ICcalib"; version="1.0.8"; sha256="1y2w12ka0qxh9dg6dlcrnndz1xrv8gkppan64qkyk5vjrh18ajz4"; depends=[fitdistrplus icenReg ICsurv MASS msm numDeriv Rcpp RcppArmadillo survival]; }; @@ -1914,46 +1976,45 @@ in with self; { IDmeasurer = derive2 { name="IDmeasurer"; version="1.0.0"; sha256="0n7rziaaxm9dqixmw6rxgq9dwnwdl3dsdnpd9s59k5skdlaxnl5m"; depends=[infotheo lme4 MASS]; }; IDmining = derive2 { name="IDmining"; version="1.0.6"; sha256="0fsl1byz0n5jwswh2ydzz5lsycja54545cf7dr1r3h1a372yz2mv"; depends=[data_table doParallel foreach]; }; IETD = derive2 { name="IETD"; version="1.0.0"; sha256="0avhyw0zcb8vj0nqfy41yq5kcd8yf9rmaawdvfcy5rqwxmi1mw9l"; depends=[doParallel dplyr foreach ggplot2 lubridate Rdpack]; }; + IFC = derive2 { name="IFC"; version="0.0.9"; sha256="0arjy1bz0hcncw0kiv1pcrkdrn5kh2f9q1qhbw504plpzk5rgh67"; depends=[DT gridExtra jpeg KernSmooth lattice latticeExtra png Rcpp RcppProgress tiff visNetwork xml2]; }; IFP = derive2 { name="IFP"; version="0.2.1"; sha256="06zyadcr8p6q0c5h9n29yl02ixysdj6lfbn9hfir0bk9hyv9yfyr"; depends=[coda haplo_stats]; }; IGG = derive2 { name="IGG"; version="1.0"; sha256="1cibb9z18xc1zx1813lk14n6p5am84hm7w0hkrsif4j3p89lrwif"; depends=[GIGrvg glmnet MASS Matrix pscl]; }; IGP = derive2 { name="IGP"; version="0.1.0"; sha256="0xv89gmyfgnq5kzcmjbp5nx9zbr3gbdzkvffp99bxbkvf759m255"; depends=[PythonInR R6]; }; IGST = derive2 { name="IGST"; version="0.1.0"; sha256="12ycrfsgwakaj3k39k1j4ky58wr7a2ibyz6j9cznvjjv6cgz9zg5"; depends=[BootMRMR e1071]; }; IHSEP = derive2 { name="IHSEP"; version="0.1"; sha256="1djc5509b5iyi6y0i36h77l6sq1h0w721v2isxqldcqk3gb0bx11"; depends=[lpint Rcpp]; }; - IIS = derive2 { name="IIS"; version="1.0"; sha256="01h7nncxn1drnqf1h7snw0pvkgkn8dxq53k2sqcw3kdjlk5mj2l6"; depends=[asbio BSDA Hmisc NSM3 Rfit]; }; ILS = derive2 { name="ILS"; version="0.2"; sha256="0lj3ripkaq6jn00lpxjihjhm8g1gbkppmb1y9kkrymphg80k1by7"; depends=[depthTools fda_usc lattice MASS multcomp]; }; IM = derive2 { name="IM"; version="1.0"; sha256="1f1vr5zfqnanc5xmmlfkjkvxwbyyysi3mcvkg95p8r687a7zl0cx"; depends=[bmp jpeg png]; }; IMAGE = derive2 { name="IMAGE"; version="1.0"; sha256="0xgrja7qhklcmbm0zz5xg94gw5kl05nk3v77l7vxq2d5sk0435g3"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; }; IMFData = derive2 { name="IMFData"; version="0.2.0"; sha256="1mlxpsbyvh1zi8ivdblbd58zfv5hflnknbasz5z8xk9911czrn6p"; depends=[httr jsonlite plyr]; }; - IMIFA = derive2 { name="IMIFA"; version="2.1.2"; sha256="1jim9dhiwm4jiwp6amfsfzl0wdk5k7fi08wgjj7l8pcjsrvv98ny"; depends=[matrixStats mclust mvnfast Rfast slam viridis]; }; + IMIFA = derive2 { name="IMIFA"; version="2.1.3"; sha256="08dikyzl3c34y1hjhcbqx34bn33nfhkggb3m208fjnmq82yqgfm6"; depends=[matrixStats mclust mvnfast Rfast slam viridis]; }; IMIS = derive2 { name="IMIS"; version="0.1"; sha256="09zb48vdj0i3vf8vxrs07xwb9ji27vp2fyvmg6jfq631licsryc2"; depends=[mvtnorm]; }; IMP = derive2 { name="IMP"; version="1.1"; sha256="0ilvgz2bngffyx6ifqqx1snsn6mmq7rx3wg44093yrviaw39qdfv"; depends=[dplyr ggplot2 shiny tidyr]; }; IMPACT = derive2 { name="IMPACT"; version="0.1.1"; sha256="0ai22gvmfj9j00cw742szfqqay63b5lmnszkwwdfdvidls43v0bm"; depends=[]; }; IMTest = derive2 { name="IMTest"; version="1.0.0"; sha256="0n0swbi051cr7mrjmszqg79hxa38ccyq69ws8c37ixwb0lpxmx48"; depends=[lme4 ltm MASS reshape2]; }; - IMWatson = derive2 { name="IMWatson"; version="0.5.0"; sha256="11nzjhidgv53yxijdhw3j35xb9b30fv1yzhb0y2qxjhfyja6pc50"; depends=[assertive glue httr jsonlite magrittr R6 shiny shinydashboard shinyjs V8]; }; - IMaGES = derive2 { name="IMaGES"; version="0.1"; sha256="086i6nk9q11b278b0vn2yb52yh3pwlnhp5nyan230xczn1k47sgm"; depends=[BH ggm graph igraph lavaan Rcpp RcppArmadillo Rgraphviz sfsmisc]; }; - IMak = derive2 { name="IMak"; version="1.2.2"; sha256="1g2h0c3n81hkj6zl2wc9xnjjwpv56ghp6gzcv2znc1nhs8fswxsb"; depends=[]; }; + IMaGES = derive2 { name="IMaGES"; version="0.1.1"; sha256="1w6wigwqji758m18kp6w6x1lchabrksnlnbp0r7l8wkdk36j2n5k"; depends=[BH ggm graph igraph lavaan Rcpp RcppArmadillo Rgraphviz sfsmisc]; }; + IMak = derive2 { name="IMak"; version="2.0.1"; sha256="0spq7h9l2nnng1jiflpll8vbgmdhrpwi426v70qjslg5if1izcpm"; depends=[imager]; }; IMmailgun = derive2 { name="IMmailgun"; version="0.1.2"; sha256="09acmi6xj186fb8nhj8q0nxmkp2p32a1l95glzvz84gax4xakhz8"; depends=[httr]; }; INCATome = derive2 { name="INCATome"; version="1.0"; sha256="1gbmcirs49ydmk5rg2vl5gdy39dfx9psw5mijibzjszcfjar3kqs"; depends=[genefilter limma multtest RankProd siggenes]; }; - INDperform = derive2 { name="INDperform"; version="0.2.2"; sha256="1kcs34mp6wafkkqv4pz1n8qpm633pk2das4ifkm3383gy33kjb3n"; depends=[cowplot dplyr ggplot2 htmlwidgets jsonlite magrittr mgcv nlme purrr RColorBrewer rhandsontable rlang shiny stringr tibble tidyr vegan]; }; INLABMA = derive2 { name="INLABMA"; version="0.1-11"; sha256="0wzyb3c7zpksqz198kigi4rpblvk0rjamngmyabw5xdpizxdg6zi"; depends=[Matrix sp spdep]; }; INLAMSM = derive2 { name="INLAMSM"; version="0.1"; sha256="0km7kwwif2hqqa9jhglvkinzcm6gfp7mn219hqm5ds5rfgrcyl75"; depends=[Matrix MCMCpack]; }; INSPIRE = derive2 { name="INSPIRE"; version="1.5"; sha256="0938l50yxnb5q628mp874ayx9ybvcjddis20y1hzm5cmlsg0hqhg"; depends=[missMDA]; }; - IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.3"; sha256="0l5baz68714vqlzfp6v1r93lwmv0nsq2wqidgf5zwj5r391y7c5g"; depends=[bsplus colorRamps colorspace colourpicker data_table dplyr DT ggplot2 igraph kableExtra magrittr markdown PlayerRatings plotly RColorBrewer Rcpp reshape2 scales shiny shinydashboard shinyjs withr]; }; + IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.4"; sha256="1wp9i4vy40a10y5lj4m2hs2nx5nz1qyqz6gd27284zkydrwhpnxr"; depends=[bsplus colorRamps colorspace colourpicker data_table dplyr DT ggplot2 igraph kableExtra magrittr markdown PlayerRatings plotly RColorBrewer Rcpp reshape2 shiny shinyjs stringi]; }; + IOHexperimenter = derive2 { name="IOHexperimenter"; version="0.1.3"; sha256="0xk470mm4av9knj8fyss57yvq88qhg2nyapnzlccr63v28v3mn9b"; depends=[assertthat BH magrittr Rcpp]; }; IPCWK = derive2 { name="IPCWK"; version="1.0"; sha256="0hah1xl6zli0346jh57rjc5x8vynhaysj0l481rmvznsghv6im23"; depends=[MASS survival]; }; - IPEC = derive2 { name="IPEC"; version="0.1.2"; sha256="1fglr5hs61n13251145wqzvxy362fx32yzral96xd8li76ljxiic"; depends=[MASS numDeriv]; }; + IPDFileCheck = derive2 { name="IPDFileCheck"; version="0.6.3"; sha256="173b9vj19622gay58aaz2vad58aw5q2v2xm00y7cpaa2spzb2r85"; depends=[dplyr eeptools GlobalOptions lubridate testthat]; }; + IPEC = derive2 { name="IPEC"; version="0.1.3"; sha256="0h1b9h33zxx23rj8c9790nsqykwhznavy8hfkgv9gx7nphrsy5ma"; depends=[MASS numDeriv]; }; IPMRF = derive2 { name="IPMRF"; version="1.2"; sha256="1zvwwhiy0p134zvm5ldc92pdd1ap72bhbrlf02rz9m2hlsxmwy67"; depends=[gbm party randomForest]; }; IPPP = derive2 { name="IPPP"; version="1.1"; sha256="19ccs25fd56ns7ssi51w2jzjd4d57vyimwmfvf27mmigb537bd5y"; depends=[]; }; IPV = derive2 { name="IPV"; version="0.1.1"; sha256="0bd59sfqqz2g6lwzlg3vqpw0y8q989n4q76qr1dvnq847c6fg8wz"; depends=[ggforce ggplot2]; }; IPWboxplot = derive2 { name="IPWboxplot"; version="0.1.0"; sha256="0lyqcjnbissick5hzwrx21pykq4pww9j0i03j0gy43awl1cq5qq8"; depends=[isotone]; }; IQCC = derive2 { name="IQCC"; version="0.7"; sha256="1zalpmyywkrnci0jd8irakjhiqmr52zhj1sbxf9pz5c7wks2rdbc"; depends=[MASS miscTools qcc]; }; IRATER = derive2 { name="IRATER"; version="0.0.1"; sha256="0jxdvjmnmangbqy3ibb5qrj9jz3wrzs0wa1r2gjk4v8vsbk0ipcf"; depends=[coda lattice plyr R2admb]; }; - IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.3.0"; sha256="09nzzalz107l6dscl4xxd8znwd9fppjlfyvn1vfd9jhx7mkjlnlq"; depends=[dplyr IRISSeismic pracma RCurl seismicRoll signal stringr XML]; }; + IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.4.1"; sha256="0bxxs88s0x1n01c7dwm9ki0x9qcfjxsynih5fmfacq5n274cmyz3"; depends=[dplyr IRISSeismic pracma RCurl seismicRoll signal stringr XML]; }; IRISSeismic = derive2 { name="IRISSeismic"; version="1.5.2"; sha256="117p2kh2r2iw758iqlpqaak83czfv34p15907g18x496r5vri429"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; IROmiss = derive2 { name="IROmiss"; version="1.0.2"; sha256="0rcyijx5w8nn7n1hc4sdrphgggnq3676f8fpzxs85vkk52z0vp0a"; depends=[equSA huge mvtnorm ncvreg]; }; - IRTBEMM = derive2 { name="IRTBEMM"; version="1.0.2"; sha256="03a1kjhyaqamy4988ns4m9mwbdljcyppcf16hmmi9q0zrzn0d2ki"; depends=[]; }; IRTShiny = derive2 { name="IRTShiny"; version="1.2"; sha256="094ax94y6k5z4vlxfla2w19f57q0z32nwwd5npjbgmnkhvfhhl9v"; depends=[beeswarm CTT ltm psych shiny shinyAce]; }; IRdisplay = derive2 { name="IRdisplay"; version="0.7.0"; sha256="12chk53nf4zckgc4yl7gbvd7m5dvli52inp5b3f0zvcjvfncksli"; depends=[repr]; }; - IRkernel = derive2 { name="IRkernel"; version="1.1"; sha256="1viqxs91dys1z4cf7gb59rmqvzb8lc7jdp4azrpmhgwa8qf46s94"; depends=[crayon digest evaluate IRdisplay jsonlite pbdZMQ repr uuid]; }; + IRkernel = derive2 { name="IRkernel"; version="1.1.1"; sha256="1y06v3difaiihxfm2abm88nnjzvkla4p346cm1nxmga4iwb2k8gm"; depends=[crayon digest evaluate IRdisplay jsonlite pbdZMQ repr uuid]; }; ISAT = derive2 { name="ISAT"; version="1.0.5"; sha256="0xlq568spfz527jxbqamrn1j87hnasg0kp2bcyjycaghmhsc6zmg"; depends=[gtools stringr]; }; ISBF = derive2 { name="ISBF"; version="0.2.1"; sha256="12mk4d0m5rk4m5bskkkng5j6a9dzh8l1d74wh8lnamq7kf9ai9if"; depends=[]; }; ISCO08ConveRsions = derive2 { name="ISCO08ConveRsions"; version="0.1.0"; sha256="0jqg03rxr3k01y29b7gq89jk2jd2qrshmq3338j8w6531r7y12lg"; depends=[]; }; @@ -1977,23 +2038,21 @@ in with self; { IgorR = derive2 { name="IgorR"; version="0.8.1"; sha256="1lkiz3gxj8i1xbr5jp69z21rpk7kz3a68h29inp1qa7zi7gikmgx"; depends=[bitops]; }; ImaginR = derive2 { name="ImaginR"; version="0.1.7"; sha256="12ypfrqw6xym84i1axd3h0qd2md96rc0glas3rgzpdhdyw4lbfmn"; depends=[imager jpeg]; }; Imap = derive2 { name="Imap"; version="1.32"; sha256="0b4w0mw9ljw6zxwvi0qzb08yq9n169lzgkdcwizrd07x9k9xjxs7"; depends=[]; }; - Immigrate = derive2 { name="Immigrate"; version="0.0.2"; sha256="1khxjh4lpsgv5qqk30ry6r8y3vjblwxsx9frv63pws4x1j6j2apm"; depends=[pROC Rcpp]; }; - ImpactEffectsize = derive2 { name="ImpactEffectsize"; version="0.4.0"; sha256="05cd3k5ccy0jpz20rrg7wlmpii7zn0bh104h8vg7caw8ilpx7v0x"; depends=[DataVisualizations Hmisc matrixStats parallelDist pracma]; }; + Immigrate = derive2 { name="Immigrate"; version="0.2.1"; sha256="0pnnvv63kkg7pgyblb1vlx54c6169n40fn58aypdy5xcnknabvxn"; depends=[pROC Rcpp]; }; + ImpactEffectsize = derive2 { name="ImpactEffectsize"; version="0.6.0"; sha256="0i2bc72rw410sq8f64nfj6vvkm3wmmlwps19ndg966gcfg9llv6k"; depends=[caTools matrixStats parallelDist Rcpp]; }; ImpactIV = derive2 { name="ImpactIV"; version="1.0"; sha256="1bb6gw1h15hscr71hy779k2x5ywzx63ylim3hby02d7fnnj46p58"; depends=[nnet]; }; ImportExport = derive2 { name="ImportExport"; version="1.1"; sha256="12i9mwspk59zicn1mn21xrs90c8dqxm1q7alqbzscgkpf3xbjrnn"; depends=[chron gdata haven Hmisc RODBC xlsx]; }; ImputeRobust = derive2 { name="ImputeRobust"; version="1.3-1"; sha256="1zvwlpffpm4gqysz57clf8jkqr72yjbzx90pdy95la51m0b6cdbd"; depends=[extremevalues gamlss gamlss_dist lattice mice purrr]; }; InDisc = derive2 { name="InDisc"; version="1.0.2"; sha256="1mvd6r1ly924n17275n4i9p8sghvm929kbir0bq6850kk2m0dgq7"; depends=[optimbase psych]; }; InPosition = derive2 { name="InPosition"; version="0.12.7.1"; sha256="0d9c7dwaa1v0j8p5ff9223fc2gkbmbvyqylma2d8l4x5m92jmkv0"; depends=[ExPosition prettyGraphs]; }; - InSilicoVA = derive2 { name="InSilicoVA"; version="1.2.8"; sha256="0lxv8m394mv9likc8ph17xxd5san326n9c77q7vmgs03a6chqrjx"; depends=[coda ggplot2 InterVA5 rJava]; }; + InSilicoVA = derive2 { name="InSilicoVA"; version="1.3.0"; sha256="0yaqn9hy6cq2n6cylbgycyg1f9l4d0hm00il6g275zflijjzirq7"; depends=[coda ggplot2 InterVA5 rJava]; }; IncDTW = derive2 { name="IncDTW"; version="1.1.3.1"; sha256="1hwwsh70mmdwqaqw4xxnbvc3g2nhmx64bd0hzxh63wr15jch0w8b"; depends=[data_table ggplot2 Rcpp RcppArmadillo RcppParallel scales]; }; IncomPair = derive2 { name="IncomPair"; version="0.1.0"; sha256="156mc4csbxz976md7ikjd6sqamzsfc8ik9xf1qbhrfl8y7957kbb"; depends=[]; }; - IncucyteDRC = derive2 { name="IncucyteDRC"; version="0.5.4"; sha256="1k7jqcyx5n4my5rbyfa693ganbk91xganyagq8x8szli9h1491ii"; depends=[cowplot dplyr drc DT ggplot2 magrittr shiny tidyr XML]; }; IndTestPP = derive2 { name="IndTestPP"; version="1.0"; sha256="1ywl35k2syv46pz6ap5sjkynapqj04aq197czspqky0pvrq7ldr1"; depends=[]; }; IndepTest = derive2 { name="IndepTest"; version="0.2.0"; sha256="017jasqsxm5m13rhfy9gxvd8nfib5k5y5c8520p3hcffqrxr683p"; depends=[FNN mvtnorm Rdpack]; }; - IndependenceTests = derive2 { name="IndependenceTests"; version="0.2"; sha256="04qfh2mg9xkfnvp6k7w1ip4rb663p3pzww9lyprcjvr3hcac7gqa"; depends=[xtable]; }; - IndexConstruction = derive2 { name="IndexConstruction"; version="0.1-2"; sha256="16fwbq4d9k3092qwj7yk2s66gp8rgv7g0ii4240imfjh28zlb6xa"; depends=[fGarch KernSmooth lubridate RcppBDT xts zoo]; }; + IndexConstruction = derive2 { name="IndexConstruction"; version="0.1-3"; sha256="08bi3x7a9plxshgj6hq58mzkf1117a7p0fd1akqjh7k8mgywifwf"; depends=[fGarch KernSmooth lubridate RcppBDT xts zoo]; }; IndexNumR = derive2 { name="IndexNumR"; version="0.1.3"; sha256="1jrbl2gwgp4msigkspgqcvgvxq169jiiz4acixky37i6hw0n34p6"; depends=[]; }; - IndexNumber = derive2 { name="IndexNumber"; version="1.1"; sha256="1db1bd44zm8wwqr6rpnq97xj6jrv297vzs156by33z18y79fdgbq"; depends=[]; }; + IndexNumber = derive2 { name="IndexNumber"; version="1.2"; sha256="0xiy84gfks24c1cmqdki95nysa8gkihcgcsdfbm0wn8w8n3vb6va"; depends=[]; }; IndianTaxCalc = derive2 { name="IndianTaxCalc"; version="1.0.2"; sha256="1fxw884wj9n8drk2xz3rgr4f7b4fckh5firrf5gdz6d1nk9hdvc1"; depends=[]; }; InfDim = derive2 { name="InfDim"; version="1.0"; sha256="0rh3ch0m015xjkxy08vf9pc6q7azjc6sgicd2j6cwh611pqq39wq"; depends=[]; }; InferenceSMR = derive2 { name="InferenceSMR"; version="1.0"; sha256="13d3v8kyk6br33659jgql6j1nqmnd8zszqrwfw2x3khkiqzgdmhk"; depends=[survival]; }; @@ -2002,6 +2061,7 @@ in with self; { InfoTrad = derive2 { name="InfoTrad"; version="1.2"; sha256="0blfn59w73hjga15sw8plwvn6yq9fj95nxwp018mp1harl8wa5db"; depends=[nloptr]; }; Information = derive2 { name="Information"; version="0.0.9"; sha256="0pszwzj3r7vdvdsy9w1qz95zxp7y2bsyg36b58mm4qcvcvymd4kn"; depends=[data_table doParallel foreach ggplot2 iterators plyr]; }; InformationValue = derive2 { name="InformationValue"; version="1.2.3"; sha256="1b5g2wyp7x5cdhmf4325n3q7afa6i352lh80j28c8s4356pr3w9j"; depends=[data_table ggplot2]; }; + InformativeCensoring = derive2 { name="InformativeCensoring"; version="0.3.5"; sha256="1c8mfb82px9z27lc7br514mcbl65q7lfa3df9w3vvnk5g7ljswha"; depends=[boot dplyr survival]; }; Infusion = derive2 { name="Infusion"; version="1.4.1"; sha256="0nxp416mbzawrdk4qwhg5j7lm8zdyplrngka2hw2rlsqmlwhvqzl"; depends=[blackbox foreach mvtnorm numDeriv pbapply proxy spaMM viridis]; }; InjurySeverityScore = derive2 { name="InjurySeverityScore"; version="0.0.0.2"; sha256="0g52cksa774in18ykrym61l3my9zm343bgsq5mg7mki9x65xd35z"; depends=[dplyr rlang tidyr]; }; InspectChangepoint = derive2 { name="InspectChangepoint"; version="1.1"; sha256="0zrfyzz3l9jff7044dhrjv8rp8f258fz993ycyxyd29nd7x9n9nj"; depends=[MASS]; }; @@ -2013,7 +2073,7 @@ in with self; { IntegratedMRF = derive2 { name="IntegratedMRF"; version="1.1.9"; sha256="0kklgc48cib4bjfs9qbw13nkp8xyjdazrg6z15x69jylnxyakic7"; depends=[bootstrap ggplot2 limSolve MultivariateRandomForest Rcpp]; }; InterSIM = derive2 { name="InterSIM"; version="2.2.0"; sha256="14yccan88szf26w1hg1lkvmssids961gng7il3bjr2f1l0k8vd3b"; depends=[MASS NMF]; }; InterVA4 = derive2 { name="InterVA4"; version="1.7.6"; sha256="02fci1p8im8jpalv1mbrhrwhvpi23mzhwhpd1knpxyv7h6l9x0kg"; depends=[]; }; - InterVA5 = derive2 { name="InterVA5"; version="1.0.4"; sha256="18gvqmyglssdm72hlrv0nmk8yxavyj6q89dlw62zybcpvns6q3ba"; depends=[curl readxl]; }; + InterVA5 = derive2 { name="InterVA5"; version="1.1.0"; sha256="058vncqp3z1bqr5bdx5rvv07si7pblyfw2n35022bq2k4rc63093"; depends=[curl readxl]; }; Interact = derive2 { name="Interact"; version="1.1"; sha256="1g9zhafdpr7j410bi8p03d8x9f8m3n329x8v01yk15f65fp7pl1d"; depends=[]; }; InteractiveIGraph = derive2 { name="InteractiveIGraph"; version="1.0.6.1"; sha256="0srxlp77xqq0vw2phfv7zcnqswi2i5nzkpqbpa5limqx00jd12zy"; depends=[igraph]; }; Interatrix = derive2 { name="Interatrix"; version="1.1.1"; sha256="1ljxgiia0y8wv1rlm5brd0yvs1r7r5wyrs6nykmwrwwya4k34mpz"; depends=[MASS tkrplot]; }; @@ -2028,22 +2088,20 @@ in with self; { Inventorymodel = derive2 { name="Inventorymodel"; version="1.1.0"; sha256="1l87xghdksgmb2k3a8j382p7ffi2pma38a6pn31sfjsa6bgmrdnk"; depends=[e1071 GameTheoryAllocation]; }; Irescale = derive2 { name="Irescale"; version="2.3.0"; sha256="037bzli0zwlfbf5xmllqg2pi0shs33ggrnw69kzyw2sf780y3hs2"; depends=[e1071 fBasics ggplot2 imager Rdpack reshape2 sp]; }; IrishDirectorates = derive2 { name="IrishDirectorates"; version="1.4"; sha256="1mwjrmqga7f0p5w2m4f0i6mb68jimx6791pz03r8iqj3yx0vzkh0"; depends=[Rcpp RcppArmadillo]; }; - IrregLong = derive2 { name="IrregLong"; version="0.2.0"; sha256="17s3gl550qzp81dl901iijfad3qg2mclsc00hsqyg0adh63jlj91"; depends=[data_table frailtypack geepack survival]; }; + IrregLong = derive2 { name="IrregLong"; version="0.3.2"; sha256="112adsl4lxb5r77zdynn21qi932px6j037r3pnbirk723b306xng"; depends=[data_table frailtypack geepack survival]; }; IsingFit = derive2 { name="IsingFit"; version="0.3.1"; sha256="1prdzzp15klkdy72379bjksdgxr15nk16pqm35w95341cddxchc7"; depends=[glmnet Matrix qgraph]; }; IsingSampler = derive2 { name="IsingSampler"; version="0.2.1"; sha256="1cs4vk53b5fy6kywvycfjf62571yx92nvgp5i8hlvms1362ir7gv"; depends=[dplyr magrittr nnet plyr Rcpp]; }; - Iso = derive2 { name="Iso"; version="0.0-18"; sha256="014mm5b1f7i6nwlz3kyg1biph0y542kcx5bd13p68cv5a928qzid"; depends=[]; }; + Iso = derive2 { name="Iso"; version="0.0-18.1"; sha256="0vy6jdyvp751430sf2f690yhasjr70cpk3p3lnaaxjq3fs5gg99g"; depends=[]; }; IsoCI = derive2 { name="IsoCI"; version="1.1"; sha256="0r7ksfic6p2v95c953s4gbzzclk4ldxysm8szb8xba1w0nx2izil"; depends=[KernSmooth]; }; IsoCheck = derive2 { name="IsoCheck"; version="0.1.0"; sha256="06g0srp14yiha95mbmifaqf5yr5ppjnc20nyr237ah3l776mhsif"; depends=[dplyr gtools plyr]; }; IsoGene = derive2 { name="IsoGene"; version="1.0-24"; sha256="0flm0mszankvl3aizwsazyhvz2xkr4gfqiqywpc0r1swqj19610r"; depends=[affy Biobase ff Iso xtable]; }; - IsoSpecR = derive2 { name="IsoSpecR"; version="2.0.1"; sha256="1y101x7138pdylp2qsmyd10dh0d3wwic292qfi2kbn3z849dlhnn"; depends=[Rcpp]; }; - IsoplotR = derive2 { name="IsoplotR"; version="3.3"; sha256="1bldpa7j37k29k51lpbpyr4g4939zw1n9dv498v92w82kzj2p6zf"; depends=[MASS]; }; + IsoSpecR = derive2 { name="IsoSpecR"; version="2.1.2"; sha256="11vni4fwwfwby0r3bsidnb05v1phim5l9njl03l40d2sw08wr11s"; depends=[Rcpp]; }; + IsoplotR = derive2 { name="IsoplotR"; version="3.4"; sha256="14y4n1v0lrcff4fx3iiywph11zqjarzzv0nbx7pcm9yvyxkh83zf"; depends=[MASS]; }; IsoriX = derive2 { name="IsoriX"; version="0.8.1"; sha256="0rr9frj0mhismls60vgax357jgfyq2wci7rvhvp70fh5k998mzid"; depends=[lattice latticeExtra numDeriv raster rasterVis sp spaMM viridisLite]; }; IsotopeR = derive2 { name="IsotopeR"; version="0.5.4"; sha256="0xgha5alh5y5qfz00rl73q4xlamnmrwij7kckljmy6zgrlrdnl6x"; depends=[colorspace ellipse fgui plotrix runjags]; }; - ItemResponseTrees = derive2 { name="ItemResponseTrees"; version="0.2.4"; sha256="1qcq9sskfpfiixi38m8didml53r1a2cilvjg5pfwgcvnw10vrncz"; depends=[backports checkmate dplyr generics glue magrittr MASS Matrix mirt purrr rlang sets stringr tibble tidyr tidyselect]; }; - J4R = derive2 { name="J4R"; version="1.0.7"; sha256="02ngxyyl8hpjn1r0w8kahqp3hy9xm37m0g4hzb7mdxkkzcxpv7hx"; depends=[]; }; + ItemResponseTrees = derive2 { name="ItemResponseTrees"; version="0.2.5"; sha256="02lfirlahc1v6mm24j2zvc485q64ybdmh65fgvq8bvy9kgj902kh"; depends=[checkmate dplyr generics glue magrittr MASS Matrix mirt purrr rlang sets stringr tibble tidyr tidyselect]; }; JADE = derive2 { name="JADE"; version="2.0-3"; sha256="1fj2wawx5ac1fvlp28naqha0i17f1sb47j2qqzgccvx17ycqmmjn"; depends=[clue]; }; JASPAR = derive2 { name="JASPAR"; version="0.0.1"; sha256="0wiyn7cz45hwy9zkvacx28zdrg78q6715cg4r9xgcb39q25s0dcy"; depends=[gtools]; }; - JBTools = derive2 { name="JBTools"; version="0.7.2.9"; sha256="0bynqn3daqgmi3l9asy34mfwyfjkn35k465dfqqi3xwx6cbzlg5k"; depends=[colorspace foreach gplots plotrix]; }; JFE = derive2 { name="JFE"; version="2.1.3"; sha256="16fbwi9znvf560vlrpdipg69vw1kyg2081iz1l2adc2wyxp81dda"; depends=[BurStFin fAssets fBasics fPortfolio FRAPO iClick MASS quantmod rugarch tcltk2 timeDate timeSeries xts zoo]; }; JGEE = derive2 { name="JGEE"; version="1.1"; sha256="078348n623hlyc3n9yh67vv5acsnxapmbwybvrb1i7kawmqw5msi"; depends=[gee MASS]; }; JGL = derive2 { name="JGL"; version="2.3.1"; sha256="02p9z32f8j60wnh1szkjr2zfa9zwyw0gqinpsvll4dymf8cjawpw"; depends=[igraph]; }; @@ -2051,20 +2109,20 @@ in with self; { JM = derive2 { name="JM"; version="1.4-8"; sha256="1nq07hw30fqnag1h08b7crl2yfs85gyrn70aaw11bdbjv06r2x55"; depends=[MASS nlme survival]; }; JMI = derive2 { name="JMI"; version="0.1.0"; sha256="05phkwfb9v4g9jixlvbj6br7sbi64zvrgjwfr0v87ijddkxc9si9"; depends=[Rcpp RcppArmadillo]; }; JMbayes = derive2 { name="JMbayes"; version="0.8-85"; sha256="0s11jpzflc2zg60g4ffcw23c2f4zz3mzddrc2cl5y43xl2v304lb"; depends=[doParallel foreach Hmisc jagsUI MASS nlme Rcpp RcppArmadillo rstan shiny survival xtable]; }; + JMcmprsk = derive2 { name="JMcmprsk"; version="0.9.8"; sha256="0dzwyndiind2h6i2mpaizzd7iyaxq31g7w8xzz64fmagfdza9d6r"; depends=[MASS Rcpp statmod]; }; JMdesign = derive2 { name="JMdesign"; version="1.1"; sha256="0w5nzhp82g0k7j5704fif16sf95rpckd76jjz9fbd71pp2d80vlh"; depends=[]; }; JOP = derive2 { name="JOP"; version="3.6"; sha256="1kpb1dy2vm4jgzd3h0qgdw53nfp2qi74hgq5l5inxx4aayncclk7"; depends=[dglm Rsolnp]; }; JOUSBoost = derive2 { name="JOUSBoost"; version="2.1.0"; sha256="0f3rr7aw20nvmlpqrq3wzgmr55lqdqhk3wphpqq7msgvaf1zrcl7"; depends=[doParallel foreach Rcpp rpart]; }; JPEN = derive2 { name="JPEN"; version="1.0"; sha256="12rvp5bmlkwyr1gg336k655hp09gym0d2wwry70c1rz30x1sf2zs"; depends=[mvtnorm]; }; JQL = derive2 { name="JQL"; version="3.6.9"; sha256="0d926hngv4r6zl5f6yai3jwhl9hql2hv6ja3yjgplglkns66g4lh"; depends=[caret pdist randomForest]; }; JRF = derive2 { name="JRF"; version="0.1-4"; sha256="1xpvscn9iawwa0vfh3kfwzdni436bf42nvm18b8abh033ljvqpij"; depends=[]; }; - JSM = derive2 { name="JSM"; version="1.0.0"; sha256="1nvzkmfwjk5p6j32scsm7gj1zymrbqsfzwwhfyy0mfqvk4rzrd3g"; depends=[nlme Rcpp RcppEigen statmod survival]; }; JSmediation = derive2 { name="JSmediation"; version="0.1.1"; sha256="06p413jfv02k88jdsbplnz696knxglgcqa4pjrgkhhic6awdh0jf"; depends=[broom data_table dplyr glue knitr magrittr MASS purrr rlang tibble]; }; - JWileymisc = derive2 { name="JWileymisc"; version="1.1.0"; sha256="08c09jcax0ppl9q47px2anybcj8rfha8xdx226y002valqji5bz3"; depends=[cowplot data_table emmeans extraoperators ggplot2 ggthemes lavaan lme4 MASS mgcv mice multcompView psych quantreg rms robustbase VGAM]; }; + JWileymisc = derive2 { name="JWileymisc"; version="1.1.1"; sha256="10nig4b9fgxnlyaiippk6sp65ia1lcwy344cry9b5pdlxnhzva88"; depends=[cowplot data_table emmeans extraoperators ggplot2 ggthemes lavaan lme4 MASS mgcv mice multcompView psych quantreg rms robustbase VGAM]; }; JacobiEigen = derive2 { name="JacobiEigen"; version="0.3-3"; sha256="1zcs9qhf2216c590hj6qc837rnciyfsirg4zg655vxn59fgzpvyb"; depends=[Rcpp]; }; JamendoR = derive2 { name="JamendoR"; version="0.1.0"; sha256="1v5i4ggc4igp83pik32fqp07ff8iv7dp93b3qhxcsy1msa4l88lx"; depends=[dplyr httr jsonlite]; }; - JavaGD = derive2 { name="JavaGD"; version="0.6-1.1"; sha256="11knns2b1b8kd4nf8zwfzdhj4xqwkx3f1ba672vqi7jfr47938hh"; depends=[]; }; + JavaGD = derive2 { name="JavaGD"; version="0.6-2"; sha256="0bqfwfq2smkxsci2ryw35qms600iffxs1vnm7j5yhqxay4ksmbj7"; depends=[rJava]; }; Jaya = derive2 { name="Jaya"; version="0.1.9"; sha256="0b23l7xp4waxjy1vkk09xaali5axr5900v9hkki4f75wh4gb1l53"; depends=[GA]; }; - Jdmbs = derive2 { name="Jdmbs"; version="1.3"; sha256="0jjnn1lrrakai34srp9ks8a563amd1rp9vd4ydnpmgfma5qlify0"; depends=[igraph png]; }; + Jdmbs = derive2 { name="Jdmbs"; version="1.4"; sha256="14wprvxjyx1da1642z11wkzjiyxd5rbpaw1mzq4x6aw53dvh1kgv"; depends=[ggplot2 igraph png]; }; Jmisc = derive2 { name="Jmisc"; version="0.3.1"; sha256="1szn29dng54l2xmrm6pg3d5rmwdc1ks23vsnsmplnr5rx7yj002s"; depends=[]; }; JoF = derive2 { name="JoF"; version="0.1.0"; sha256="1my6fc4awrc822ibsvx3hiz4l49vp8dx0j05v56r7d27xizy8j0j"; depends=[]; }; JoSAE = derive2 { name="JoSAE"; version="0.3.0"; sha256="1vjxzbfs8a7kpmn2lb9dca67d4njmzjr3pl16s0r9ihmmxxwwili"; depends=[nlme]; }; @@ -2074,7 +2132,7 @@ in with self; { JointNets = derive2 { name="JointNets"; version="2.0.1"; sha256="18n9dsy0w0nh7dznp6gw6g5fhhjhf5y589nb49hri0721kq1h3rb"; depends=[brainR igraph JGL lpSolve MASS misc3d oro_nifti pcaPP rgl shiny]; }; Julia = derive2 { name="Julia"; version="1.1"; sha256="0i1n150d89pkds7qyr0xycz6h07zikb2y07d5fcpaqs4446a8prg"; depends=[]; }; JuliaCall = derive2 { name="JuliaCall"; version="0.17.1"; sha256="0v0mn3q9mp8xq6bpm870v9a228b20n22cph3s0ngphni07pi0kwr"; depends=[knitr Rcpp]; }; - JuliaConnectoR = derive2 { name="JuliaConnectoR"; version="0.6.0"; sha256="174ghyj2fmacgm3a2gnpsv2yzg0fzskjqk25cvr8a9qqq2527bv4"; depends=[]; }; + JuliaConnectoR = derive2 { name="JuliaConnectoR"; version="0.6.1"; sha256="1i1yc9vcnswfzjqds7x44gcn9fyfr2pn43zkqcqxl90x2yl0kxm9"; depends=[]; }; JumpTest = derive2 { name="JumpTest"; version="1.1"; sha256="0y375m5477nq0ybnjmfnd8hi45d8jmdnprqvw5f70llpd7bcghh0"; depends=[MASS Rcpp RcppEigen]; }; KANT = derive2 { name="KANT"; version="2.0"; sha256="169j72pmdkcj6hv8qgmc02aps0ppvvl1vnr1hzrb1gsf7zj7bs3y"; depends=[affy Biobase]; }; KCSKNNShiny = derive2 { name="KCSKNNShiny"; version="0.1.0"; sha256="13gzqf3g7vj8cc0xm5902q7lad2way8d0ri1fs01dnv97wmwbxvn"; depends=[caret dplyr FNN rhandsontable shiny]; }; @@ -2084,10 +2142,10 @@ in with self; { KERE = derive2 { name="KERE"; version="1.0.0"; sha256="1b16cb3ihcsp9jffmd45sd7ia4pibikmj62ad344wmq22q4fpliy"; depends=[]; }; KFAS = derive2 { name="KFAS"; version="1.3.7"; sha256="1bmph8ww9f5xpwdpwb4h4wsjkvsbgj30qz7hzfk1wkl6hc3jxxxk"; depends=[]; }; KFKSDS = derive2 { name="KFKSDS"; version="1.6"; sha256="1g11f936p554bfxlm4slxhfxki5vqkks1mrbqw4w83v2rcb50f8d"; depends=[]; }; - KGode = derive2 { name="KGode"; version="1.0.1"; sha256="05g8zr3jm13cl6wk9m693gxa3fn5cjppm56j7ih4zzswzk9b67h9"; depends=[mvtnorm pracma pspline R6]; }; + KGode = derive2 { name="KGode"; version="1.0.3"; sha256="0r5664vwq3nsjg08xxsx3lrvc4z2758fc013j8djwz5ydaas7xxs"; depends=[mvtnorm pracma pspline R6]; }; KMDA = derive2 { name="KMDA"; version="1.0"; sha256="0x4kjjdd59wvgg699vrj99wqg3s1qbkbskis1c34xv9b8bzcv94j"; depends=[]; }; - KMgene = derive2 { name="KMgene"; version="1.2"; sha256="1yj9l1mqhvyhicyycnkd639q3zkrx15ba11z9911l4c0gql8syf1"; depends=[CompQuadForm coxme kinship2 MASS Matrix mgcv nlme survival]; }; KMsurv = derive2 { name="KMsurv"; version="0.1-5"; sha256="0hi5vvk584rl70gbrr75w9hc775xmbxnaig0dd6hlpi4071pnqjm"; depends=[]; }; + KMunicate = derive2 { name="KMunicate"; version="0.0.2"; sha256="0xkghzw7vdd4d0yq3hrz6xjkxbzivjjc120axwn3ydy5jqc665g0"; depends=[checkmate cowplot ggplot2 pammtools survival tidyr]; }; KNNShiny = derive2 { name="KNNShiny"; version="0.1.0"; sha256="16zm8bhdivaap3mvhdx2qn1b1j2iqyarclb0y2qd1n4viwcfm9c1"; depends=[caret dplyr e1071 FNN psycho rhandsontable rmarkdown shiny]; }; KOBT = derive2 { name="KOBT"; version="0.1.0"; sha256="0dw6s68x95d4z5a6p8bs1368jcxv5jx0wd87js28i2qm3q57ss71"; depends=[glmnet knockoff MASS Rdpack spcov xgboost]; }; KOGMWU = derive2 { name="KOGMWU"; version="1.2"; sha256="1vz0099gp1r10n7w4p480l8rswdw100sns196d9xin2ibmmd2fx9"; depends=[pheatmap]; }; @@ -2096,21 +2154,23 @@ in with self; { KRMM = derive2 { name="KRMM"; version="1.0"; sha256="0wxzhrrc4lx20nxjny7rcfw3bya7drn88zbrlzx9f531298xwbrk"; depends=[cvTools kernlab MASS robustbase]; }; KSD = derive2 { name="KSD"; version="1.0.0"; sha256="0wqmbr51yv7f87pnhph2nrj9y2d5jql2agizcaq6lax23lj6xfb7"; depends=[pryr]; }; KSEAapp = derive2 { name="KSEAapp"; version="0.99.0"; sha256="1gfgpa2d32y6bzvf4ww70sm7niq34sqmyrhi0phlqxshqq9xviqc"; depends=[gplots]; }; - KSPM = derive2 { name="KSPM"; version="0.2.0"; sha256="0gysb4qb60xfixyj4slcxs2j1bn57vbq6j08i5ldfr9vfaf1pk0n"; depends=[CompQuadForm DEoptim expm]; }; + KSPM = derive2 { name="KSPM"; version="0.2.1"; sha256="13fq0d016z6880rr93y918l27fsxd5dxc6gbdnkma5sgsjni5cxh"; depends=[CompQuadForm DEoptim expm]; }; KScorrect = derive2 { name="KScorrect"; version="1.4.0"; sha256="1khvwc610yp3fd4fn0wcgqpzxg9g7sicjjmwvfcahs8qxn3m5vfa"; depends=[doParallel foreach iterators MASS mclust]; }; KSgeneral = derive2 { name="KSgeneral"; version="0.1.2"; sha256="15h65pkkdkakqc86vh90qx2ny9pfmd2pm5vc3qrb797l4b02mqqc"; depends=[dgof MASS Rcpp]; }; - KTensorGraphs = derive2 { name="KTensorGraphs"; version="0.2"; sha256="1851cqsn8ghp29hjp3806hl66lqjnz3d69qkmpcmk5nky426ypdr"; depends=[]; }; + KTensorGraphs = derive2 { name="KTensorGraphs"; version="1.0"; sha256="1gjcclcqx123xl0i0a31my8l7w4h17y9yxn1dw35dbiyahvn4sdj"; depends=[]; }; KappaGUI = derive2 { name="KappaGUI"; version="2.0.2"; sha256="0vklny804xpd9r60j4a01j2gak8jizwjw0abf7yvbcalv3zbpb3k"; depends=[irr shiny]; }; KappaV = derive2 { name="KappaV"; version="0.3"; sha256="13mmfb8ijpgvzfj20andqb662950lp9g25k5b26r5ba65p7nhva7"; depends=[maptools PresenceAbsence rgeos sp]; }; - KarsTS = derive2 { name="KarsTS"; version="2.2"; sha256="0ay9qi3wws0vi7lygkljaz6xhskc0mzl6r8wsaia2f5f399ya1hp"; depends=[BaylorEdPsych circular forecast infotheo mgcv missForest MVN nonlinearTseries plot3D rgl stinepack stlplus tcltk2 tkrplot tseries tseriesChaos zoo]; }; + KarsTS = derive2 { name="KarsTS"; version="2.3"; sha256="08z5gdawkp1chpkkns019aznm6ybrnamv3s9lyrlxqb8x6fj2r8q"; depends=[circular forecast infotheo mgcv missForest MVN nonlinearTseries plot3D rgl stinepack stlplus tcltk2 tkrplot tseries tseriesChaos zoo]; }; KbMvtSkew = derive2 { name="KbMvtSkew"; version="1.0.2"; sha256="14g27a0dkj4gpf5l2k96fd3aa21fz8b85lf5a1jxj0qgjmr4kib0"; depends=[]; }; KenSyn = derive2 { name="KenSyn"; version="0.3"; sha256="0s8sq3caxn4swac81196dp52r9lbmxb3ni45yaxh53f5g34slsi8"; depends=[lme4 metafor nlme]; }; Kendall = derive2 { name="Kendall"; version="2.2"; sha256="0z2yr3x2nvdm81w2imb61hxwcbmg14kfb2bxgh3wmkmv3wfjwkwn"; depends=[boot]; }; - KernSmooth = derive2 { name="KernSmooth"; version="2.23-16"; sha256="1acrkbdn3a74y4dndkcdl1njnpfqz7gk3bsz03g8lfj8l7z53hmq"; depends=[]; }; + KernSmooth = derive2 { name="KernSmooth"; version="2.23-17"; sha256="11g6b0q67vasxag6v9m4px33qqxpmnx47c73yv1dninv2pz76g9b"; depends=[]; }; KernSmoothIRT = derive2 { name="KernSmoothIRT"; version="6.4"; sha256="0qqlmcd04m89pmhrbmxxx4lzzb6sksgrm0j8x7fs5r0sxdqy6rcp"; depends=[plotrix Rcpp rgl]; }; KernelKnn = derive2 { name="KernelKnn"; version="1.1.0"; sha256="1w8k4b2q5bh0kx72ixrdb43aificl991j1akh00xn1zx3gbrjb0p"; depends=[Rcpp RcppArmadillo]; }; Kernelheaping = derive2 { name="Kernelheaping"; version="2.2.2"; sha256="1aq1yhbs07wl5rjz4v5b8k8brap4p25f76qwr5cif655fxdzxc20"; depends=[fastmatch ks magrittr MASS mvtnorm plyr sp sparr]; }; + Keyboard = derive2 { name="Keyboard"; version="0.1.0"; sha256="12i9zfpbh2297j78yrz6nnbmj926n3xdkbzmy1p9z7g9bi4cqrp1"; depends=[Iso Rcpp]; }; KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; }; + KnockoffScreen = derive2 { name="KnockoffScreen"; version="0.1.0"; sha256="0z0gzss6p3p9ilcg6jj4nqkb9h3lqc679x1q2vnmyiv6zl9cdrbm"; depends=[CompQuadForm data_table Matrix seqminer SPAtest]; }; Knoema = derive2 { name="Knoema"; version="0.1.16"; sha256="0v6w8rrw8nd4l1by5w9xd4hbxp55cma89kljha47ykvmnflsrjsc"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; }; KnowBR = derive2 { name="KnowBR"; version="2.0"; sha256="0i934gff8ldg0lm5cfcf3ip7abnparaaviq8avs7cbnacs6nw8i1"; depends=[fossil mgcv plotrix sp vegan]; }; KnowGRRF = derive2 { name="KnowGRRF"; version="1.0"; sha256="0nk0baibd184rsg23jx1wg4c2fcaqf8ww7822xrs3w5ym6vwd0rs"; depends=[MASS PRROC randomForest RRF]; }; @@ -2124,10 +2184,11 @@ in with self; { L1pack = derive2 { name="L1pack"; version="0.38.19"; sha256="09n1045lsx1ap47mhzcqghmwwhj24kvpjjr3ysprj058jp5g7ri0"; depends=[]; }; L2DensityGoFtest = derive2 { name="L2DensityGoFtest"; version="0.1.0"; sha256="0yhcj58inmj3qafvvpghs1qi8h5f14jki4qxy28jc7g8ciqxcw60"; depends=[fGarch kedd nor1mix]; }; LAGOSNE = derive2 { name="LAGOSNE"; version="2.0.1"; sha256="1lay0zb24k5ms4nfr62pgpriy7nfafnkdjjrd7xxznsi7dqrav0y"; depends=[curl dplyr lazyeval magrittr memoise progress purrr rappdirs rlang sf stringr tibble tidyr]; }; - LAM = derive2 { name="LAM"; version="0.4-17"; sha256="1isvhmrrpaamahwkxxsgyq6gbzcvfsk2s4ccjavnab4p79j0x782"; depends=[CDM Rcpp RcppArmadillo sirt]; }; + LAM = derive2 { name="LAM"; version="0.5-15"; sha256="18p8w2n2k4788vpxhdxnmcafwj7a5bvihk530fiynkra3xrn1cr4"; depends=[CDM Rcpp RcppArmadillo sirt]; }; LANDD = derive2 { name="LANDD"; version="1.1.0"; sha256="13szkww9nw8zywfrqd8mwgj9csgragm0bx8ia52rcpakpc3hv3hx"; depends=[BH doParallel fdrtool foreach GGally ggplot2 GOSemSim GOstats igraph intergraph Matrix modeest mvtnorm pROC Rcpp]; }; LARF = derive2 { name="LARF"; version="1.4"; sha256="1sqib7smgjacn07ishwls1nlbvcb6fpp1vhrjwf9g4xf9jk30i8h"; depends=[Formula]; }; LARisk = derive2 { name="LARisk"; version="0.1.0"; sha256="05pszgm53dndq114qqb3kcddbvc16a9mgalxjsyh56aa2a4wh7q6"; depends=[Rcpp]; }; + LAWBL = derive2 { name="LAWBL"; version="1.1.0"; sha256="0sl2pdmf297qds9p818wd17mlj3w6qfynqvc07myjxiwsv8fimkk"; depends=[coda MASS]; }; LBSPR = derive2 { name="LBSPR"; version="0.1.5"; sha256="0bkq7lj45c5inm4klwxkwv1y39rkhwis53d1qsr908k5xmkbgg0i"; depends=[dplyr ggplot2 gridExtra plotrix RColorBrewer Rcpp shiny tidyr]; }; LCA = derive2 { name="LCA"; version="0.1.1"; sha256="014kih33y8b9nls0pcigw68jbz7vgnq8w1xbwm2d37g1m5y6xlyw"; depends=[]; }; LCAextend = derive2 { name="LCAextend"; version="1.3"; sha256="1l75y3vkbsmsm3pjd5pwy0hlv6gz5ryxs4pkx9aiyhxz2y9wnhpb"; depends=[boot kinship2 mvtnorm rms]; }; @@ -2142,7 +2203,6 @@ in with self; { LDPD = derive2 { name="LDPD"; version="1.1.2"; sha256="1khdx8vwlpliyjc4sxcdiywbxl8lc9f5s3457vcip1j8dv537lbm"; depends=[MASS nleqslv]; }; LDRTools = derive2 { name="LDRTools"; version="0.2-1"; sha256="05srfyplsypi3whfa71lx7pnad23irpf0p7rxmrpv28jgdmrz6wf"; depends=[]; }; LDcorSV = derive2 { name="LDcorSV"; version="1.3.2"; sha256="0lvk3xz400yd3w0cjdfi6hir1ym1mffd504vycwgck5fkzljpcvx"; depends=[]; }; - LDheatmap = derive2 { name="LDheatmap"; version="0.99-7"; sha256="1r0j8bihi5z1x0sgaf7dwzpsw9i0nc1vylvipvc0cia2ka1lr9dc"; depends=[genetics Rcpp snpStats]; }; LDlinkR = derive2 { name="LDlinkR"; version="1.0.2"; sha256="0143g41hcljqsfngly56g47pc2pj5xc3myyqia1akxrlwpzdlh7h"; depends=[httr]; }; LDtests = derive2 { name="LDtests"; version="1.0"; sha256="1jwqr7zlp9hv7vw8xp80xvrwbdv796wjgr914v393wfa07j5wbd1"; depends=[]; }; LEANR = derive2 { name="LEANR"; version="1.4.9"; sha256="053xy13ys5hibafdnbkwqdk36hw7dhanp4frfacpfpn5f9nfh95r"; depends=[foreach igraph]; }; @@ -2153,13 +2213,13 @@ in with self; { LFDREmpiricalBayes = derive2 { name="LFDREmpiricalBayes"; version="1.0"; sha256="1imw3djmbpdyplv9dmdzzirp9imk88j0kcxcyfh8yr9ywgd77x6b"; depends=[matrixStats R6]; }; LGEWIS = derive2 { name="LGEWIS"; version="1.1"; sha256="1i52vp0ghjzmyh4r8h6jpyij7x4skw99xvw017b56m8fg64zy70r"; depends=[CompQuadForm geeM mvtnorm SKAT]; }; LGRF = derive2 { name="LGRF"; version="1.0"; sha256="1kdx6y55aa9n6v43zfz6jk8amvvxbx79sqm1jx4ihgkpgcdglan7"; depends=[CompQuadForm geepack SKAT]; }; - LHD = derive2 { name="LHD"; version="0.1.3"; sha256="1cd3m67r6b6y4wszax0qgj4b00gy8lymfy8fvvyh21grsiyaysc8"; depends=[]; }; + LHD = derive2 { name="LHD"; version="1.1.0"; sha256="0aqsb5qfv15il4b52agn4izf6lxvw9z9hh5mhirgfnbqb6w6l0r3"; depends=[]; }; LICORS = derive2 { name="LICORS"; version="0.2.0"; sha256="0p9y21k1mj1v397jpb5g6jiw7rpzbyfwr4kv2rp3lyxyasy2ykf0"; depends=[fields FNN locfit Matrix mvtnorm RColorBrewer zoo]; }; LIHNPSD = derive2 { name="LIHNPSD"; version="0.2.1"; sha256="08ils29vvaq6abkgxbh028vwjw6l6h10cirbnwr65s458zvh4xqv"; depends=[BB Bolstad2 moments optimx Rmpfr sn]; }; LIM = derive2 { name="LIM"; version="1.4.6"; sha256="03x1gnm06bw1wrzc01110bjzd2mvjdzbc2mbrazh22jrmb32w5d8"; depends=[diagram limSolve]; }; LINselect = derive2 { name="LINselect"; version="1.1.3"; sha256="1qxqwph5ja2kf1s4ggsv8w6hjgf9mr53a0gahhjix2v78309z42g"; depends=[elasticnet gtools MASS mvtnorm pls randomForest]; }; LIStest = derive2 { name="LIStest"; version="2.1"; sha256="1gk253v3f1jcr4z5ps8nrqf1n7isjhbynxsi9jq729w7h725806a"; depends=[]; }; - LLM = derive2 { name="LLM"; version="1.0.0"; sha256="0x4488mg8q4nhyjhqlzkwmh51frkkjn0gir22rk8rfzg4r6d18d6"; depends=[partykit RWeka stringr]; }; + LLM = derive2 { name="LLM"; version="1.1.0"; sha256="0kxppzaim7cmjawg5rjih4dsz8adq0asairgq3vx5lyjppb2cybx"; depends=[partykit reghelper RWeka scales stringr survey]; }; LLSR = derive2 { name="LLSR"; version="0.0.2.19"; sha256="19flvf15sn3fd21fymcg7ag1psl265m0i7siw1fqb6j6fvsn0y8v"; depends=[crayon digest dplyr ggplot2 minpack_lm nleqslv rootSolve svDialogs svglite XLConnect]; }; LMERConvenienceFunctions = derive2 { name="LMERConvenienceFunctions"; version="2.10"; sha256="08jz0i7sv7gn3bqckphbmnx0kc6yjnfvi06iyf7pcdzjaybxhj06"; depends=[fields LCFdata lme4 Matrix mgcv rgl]; }; LMest = derive2 { name="LMest"; version="2.6.1"; sha256="16amjb7dj5czlsjmr5s2hnjrfsiqwnc430q3hcncp3lllqib552g"; depends=[Formula MASS mix mmm MultiLCIRT mvtnorm]; }; @@ -2168,20 +2228,22 @@ in with self; { LNIRT = derive2 { name="LNIRT"; version="0.4.0"; sha256="0g2yqpsxz2fsvgvgn60yv2k8mv63anf6g2zzd9njarc524n874r8"; depends=[MASS]; }; LOGAN = derive2 { name="LOGAN"; version="1.0.0"; sha256="00y8kcykw01gv2g20vmpwkc3qqyafwbiw5pa731xlfnh1b8sn0hi"; depends=[dplyr foreign ggplot2 magrittr modules pander psych rlang stringr]; }; LOGICOIL = derive2 { name="LOGICOIL"; version="0.99.0"; sha256="1wgg7kigzzk5ghjn3hkjf1bb8d6mvjfmkwq64phri5jpxd742ps9"; depends=[nnet]; }; + LOPART = derive2 { name="LOPART"; version="2020.6.29"; sha256="1zxaag5pj3l9rzxhlrkx8q4adlap7wsdysb4y6ijvsmxvv63j22k"; depends=[data_table Rcpp]; }; LOST = derive2 { name="LOST"; version="2.0.2"; sha256="15ggmvjy2k4j692y9h3anfzmb0hgnx66cbr76grwvcfysdx87ick"; depends=[e1071 gdata geomorph MASS miscTools pcaMethods rgl shapes]; }; LPBkg = derive2 { name="LPBkg"; version="1.2"; sha256="1pgv6cb7m2j7qnrzybnv6x67a3ry8kpvisqj86rvxzclc9q56fdn"; depends=[Hmisc orthopolynom polynom]; }; LPCM = derive2 { name="LPCM"; version="0.46-3"; sha256="1bm5y95lzwcv8arlh55sy17m6hz1x48bcjkrwf3x34ax90qimf66"; depends=[]; }; LPGraph = derive2 { name="LPGraph"; version="2.1"; sha256="1d2kslravi3v9kf6sdabwfpa9s9xxqj3s3d7f7qfcrpfydqixq1q"; depends=[car PMA]; }; - LPKsample = derive2 { name="LPKsample"; version="2.0"; sha256="1jg99025vk42rnjdymh3nj71npn4pmdsmk6rvnx3lykpi72f85dz"; depends=[apcluster igraph mclust]; }; + LPKsample = derive2 { name="LPKsample"; version="2.1"; sha256="0ifhx8w9f6sacmnck2g7i7r742i8bwwzf0rgajw3klw2wni9ikqx"; depends=[apcluster igraph LPGraph mclust]; }; LPM = derive2 { name="LPM"; version="2.8"; sha256="0a4cf7chjyfwp1s8dfyfgbm2k6nybfmfh4bhz8b8pfj1an68bdr6"; depends=[fracdiff MASS powdist]; }; - LPRelevance = derive2 { name="LPRelevance"; version="3.0"; sha256="0rrk9rs964jbvf2qfr7lzq8bfbl1zgyn84lhpqvr8ylppvs49raw"; depends=[BayesGOF Bolstad2 caret ggplot2 glmnet leaps locfdr MASS polynom reshape2]; }; + LPRelevance = derive2 { name="LPRelevance"; version="3.1"; sha256="1clmr5i95w8mlhibbpg5wvzizqjn5xqdyv38c28djdks18l94mxb"; depends=[BayesGOF Bolstad2 caret ggplot2 glmnet leaps locfdr MASS polynom reshape2]; }; LPS = derive2 { name="LPS"; version="1.0.10"; sha256="0gf3jmhfki01z8fm5xdx59gxvhgzqd10x2iwa8369iz9dvwbjk8j"; depends=[]; }; LPStimeSeries = derive2 { name="LPStimeSeries"; version="1.0-5"; sha256="0jmcy8076w4bzfnxaq2m3s60c1wdmywkwzfyrc19wdm8idf666wh"; depends=[RColorBrewer]; }; LPTime = derive2 { name="LPTime"; version="1.0-2"; sha256="08lb6884kj9pg12mzx67fdnqb86x5s6yzb72hh3nrz50awj1f8nn"; depends=[orthopolynom]; }; LPWC = derive2 { name="LPWC"; version="1.0.0"; sha256="0jgz8rkhhsdiwz7jq568axcsfwlkzdpwssr76zx33r0gz6mf3lln"; depends=[nleqslv]; }; LPmerge = derive2 { name="LPmerge"; version="1.7"; sha256="1wf7hfj670pnzzxyqm3vwrbrvxdbyprh42s5vpv4y54a0w4nr83g"; depends=[Matrix Rglpk]; }; LPower = derive2 { name="LPower"; version="0.1.1"; sha256="00sabp2snfm0175c0cfyv83yd1zb3b8h2wrr7yxgkmr4i3py1fn7"; depends=[MASS nlme]; }; - LRQMM = derive2 { name="LRQMM"; version="1.2.1"; sha256="1lwhswzi1zn9yiqv9dgn5m6m03wwagldm2n804cwxdfq96c9vhcb"; depends=[corpcor GeneticsPed kinship2 Matrix MCMCglmm quantreg SparseM sparsesvd]; }; + LPsmooth = derive2 { name="LPsmooth"; version="0.1.1"; sha256="039f3iz4zihwb9lx1243jbjaxy5qwgaa2w9kjdcxqls7ax0bixvf"; depends=[Hmisc LPBkg LPGraph nloptr orthopolynom polynom truncnorm]; }; + LRQMM = derive2 { name="LRQMM"; version="1.2.2"; sha256="1gly4s8pr8wzcv547h6m1qr74q5n45zn0dz0lmx4pfvfgv1kym47"; depends=[GeneticsPed kinship2 Matrix MCMCglmm quantreg R_matlab rsvd SparseM sparsesvd]; }; LRTH = derive2 { name="LRTH"; version="1.3"; sha256="08vakwb7ca7956gifynzijka441yyx0wd5bq5jfhz56lzcxgfb99"; depends=[]; }; LRcontrast = derive2 { name="LRcontrast"; version="1.0"; sha256="0fs06p853r42nws2camvs87py39hb1ssxhfm6d5n9kkq81snfx4q"; depends=[DoseFinding]; }; LS2W = derive2 { name="LS2W"; version="1.3.4"; sha256="1h4vvl1gfxkdjmy6syl0gf4fv03xxxw82cxwvy10b40sf20lwmnv"; depends=[MASS wavethresh]; }; @@ -2189,15 +2251,16 @@ in with self; { LSAfun = derive2 { name="LSAfun"; version="0.6.1"; sha256="1q43ds1779w4m4al8brqj4h4y7ys5q5ysw7jbdrxdrw4lwdh7qlf"; depends=[lsa rgl]; }; LSAmitR = derive2 { name="LSAmitR"; version="1.0-2"; sha256="15qyij193scrvc1ghcssr6qdzxc4l4qh199s09bz5hvr62zwfdgb"; depends=[Hmisc lme4]; }; LSC = derive2 { name="LSC"; version="0.1.5"; sha256="1nlnwqb24sbgvl96azh8a833ij5xknjr2wr8shs59lm2n63a3ql9"; depends=[fields gam LICORS Matrix RColorBrewer]; }; - LSD = derive2 { name="LSD"; version="4.0-0"; sha256="0fsp3pwrnnic9mzkd6yxa4bnxbvg68712lb20vd42wf6jb39r2h3"; depends=[]; }; + LSD = derive2 { name="LSD"; version="4.1-0"; sha256="17pbdlcbhzf3v7l42mjikln1ga5xjp5r78gjg6a88iahk0lwwlvm"; depends=[]; }; LSDinterface = derive2 { name="LSDinterface"; version="0.4.0"; sha256="0nj4m924cj7x2djalrfyrrmycq2ha6s52m34kjgs7fc9f548lhx0"; depends=[abind]; }; LSDsensitivity = derive2 { name="LSDsensitivity"; version="0.3.2"; sha256="1d7fmmkgppgpkxmkvdnm6r7ncb527hqq47aaa8ck2wsbby6ngygb"; depends=[abind car DiceKriging diptest kSamples lawstat LSDinterface randtoolbox rgenoud sensitivity tseries]; }; LSMonteCarlo = derive2 { name="LSMonteCarlo"; version="1.0"; sha256="0w5042phkba5dw92r67ppp2s4khjpw5mm701dh9dya9lhj88bz6s"; depends=[fBasics mvtnorm]; }; - LSPFP = derive2 { name="LSPFP"; version="1.0.0"; sha256="074qd7zxa54cawipmba1khb6hyrkg553vc25gf2z0ydyv14shm0w"; depends=[bit64 data_table R_utils RCurl seqinr tcltk2]; }; + LSPFP = derive2 { name="LSPFP"; version="1.0.3"; sha256="0wxqpwfyyhk9dig9ji5na7czk19jx14lr9iqb2rllggz4cji9y65"; depends=[bit64 data_table R_utils RCurl seqinr]; }; LSRS = derive2 { name="LSRS"; version="0.2.0"; sha256="0p70v5vbxi1rf055mqgsp8v0lxnaj53bmbghli1764yn3x1k3iw6"; depends=[]; }; LTPDvar = derive2 { name="LTPDvar"; version="1.2"; sha256="0r9v5g5y9n85jdcvm7zpapm73ism48m3mmybpcmgcs028h2ndv7v"; depends=[]; }; + LTRCforests = derive2 { name="LTRCforests"; version="0.5.0"; sha256="0bd2ykcflmwlzvl0iknbnmnw35pm0bvgc50x66l595xsaxgiylwy"; depends=[ipred partykit prodlim survival]; }; LTRCtrees = derive2 { name="LTRCtrees"; version="1.1.0"; sha256="07mvbk3hwl240r46ahha0a4fzq96awk963zl8dhky51b6abp83gz"; depends=[icenReg inum partykit rpart survival]; }; - LUCIDus = derive2 { name="LUCIDus"; version="1.0.0"; sha256="1gkbfb7gnlk19iy7wnls80h3mqa0y13fld1l5ivhskr7sjlla2q0"; depends=[boot doParallel foreach glasso glmnet lbfgs Matrix mvtnorm networkD3 nnet]; }; + LUCIDus = derive2 { name="LUCIDus"; version="2.1.0"; sha256="133cxmvsxm26jmx65snfswqf69ch10bnfbninkks80h2c1y46kq6"; depends=[boot glasso glmnet lbfgs mclust networkD3 nnet]; }; LVGP = derive2 { name="LVGP"; version="2.1.5"; sha256="03sd777s16nv04ikn9b3rj67ad6n4bwi0rycc7wqdnq0dx6xgniy"; depends=[lhs randtoolbox]; }; LW1949 = derive2 { name="LW1949"; version="1.1.0"; sha256="147ymp7j98ihp1dcz3p5v9ar6h767phjdnga5q5vf1wwa2mxawg7"; depends=[MASS mgcv plotrix]; }; LZeroSpikeInference = derive2 { name="LZeroSpikeInference"; version="1.0.3"; sha256="15x29afaq13iwlj66h97k3kczg9rfgp6i9d76rji58hfgh8i8by6"; depends=[]; }; @@ -2206,10 +2269,10 @@ in with self; { LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.2.4"; sha256="0xm6rn8r5z3b04zd7gdrclhzmqcvqxyyjlch5npdyq8sbfd163hh"; depends=[data_table maptools rgdal rgeos sp spdep]; }; LadR = derive2 { name="LadR"; version="1.0.6"; sha256="14n58y1p14wwxwwrbdqv2kkplma8ficpqx8nd22qp931idijpsji"; depends=[L1pack]; }; LagSequential = derive2 { name="LagSequential"; version="0.1.1"; sha256="1i8h4acfx21r0kxbg4i0k48kvhwy2abri191wp4b22amhz4vqyyd"; depends=[]; }; - Lahman = derive2 { name="Lahman"; version="7.0-1"; sha256="02f4402nsx3fr31j34lwc0jrygqwznzynn2c11nilgw5bcb29gh9"; depends=[dplyr]; }; + Lahman = derive2 { name="Lahman"; version="8.0-0"; sha256="1ha4idp96z9kc2rs0v0iqf7jrg2riccjdqv7rj1vbwz6vjvghbfm"; depends=[dplyr]; }; LakeMetabolizer = derive2 { name="LakeMetabolizer"; version="1.5.0"; sha256="06mvdrdyl0rh9rwd0jxww0sycadcp7cj08hq35q6vyzq0jkxn2xf"; depends=[plyr rLakeAnalyzer]; }; Lambda4 = derive2 { name="Lambda4"; version="3.0"; sha256="04ikkflfr0nmy1gr3gfldlh2v8mpl82k1wwnzp57d2kn75m9vbxz"; depends=[]; }; - LambertW = derive2 { name="LambertW"; version="0.6.4"; sha256="09ygalklv0d767nwziqwaxa7h517rzqgaznmb04q43122x2gwb3k"; depends=[ggplot2 lamW MASS RColorBrewer Rcpp reshape2]; }; + LambertW = derive2 { name="LambertW"; version="0.6.5"; sha256="1c7rd1zyi43aam1lil764kgpcimpns06d4l980ng59h7bin4yq80"; depends=[ggplot2 lamW MASS RColorBrewer Rcpp reshape2]; }; Langevin = derive2 { name="Langevin"; version="1.2.1"; sha256="1bl7145585z173jv8y6f36ba29q1iq29anm44bdq9hcpql235ihy"; depends=[Rcpp RcppArmadillo]; }; LaplaceDeconv = derive2 { name="LaplaceDeconv"; version="1.0.4"; sha256="0n56cmrb536j1vmfizzag1x8wm68c2znpclwbdl8qraqzp8rmffx"; depends=[orthopolynom polynom]; }; LaplacesDemon = derive2 { name="LaplacesDemon"; version="16.1.4"; sha256="1nv1kx86cg8f2s8q15pzskc0lg94bb250p0fhybrx5sjqv1s2lj1"; depends=[]; }; @@ -2221,13 +2284,12 @@ in with self; { LatticeKrig = derive2 { name="LatticeKrig"; version="8.4"; sha256="153yaf0k4l5za8f13yh2mzjv66bnmi5kp6zaxq9vrisld4vdp58h"; depends=[fields spam]; }; Lavash = derive2 { name="Lavash"; version="1.0"; sha256="0cjl8crk0rdkyzp069fk4k0sapcjmqm3q40z5mgl0i1n59kn4s07"; depends=[glmnet MASS pracma]; }; LeArEst = derive2 { name="LeArEst"; version="1.0.0"; sha256="0kga9n0ia2zljyw4xa9n572zmxpwql8xd3ys4p9jp02h432pfkpp"; depends=[conicfit doParallel foreach jpeg opencpu]; }; - LeLogicielR = derive2 { name="LeLogicielR"; version="1.2.1"; sha256="0jd280ial4wfj5j6sbxgl2cbxabycsgmh2zsad7v7hcwbhhdd09i"; depends=[gdata IndependenceTests RColorBrewer xtable]; }; LeMaRns = derive2 { name="LeMaRns"; version="0.1.2"; sha256="0k7mpl2dgy2qvs068mzgfagvlk116p80cxj4dfzjkrr8wzrmwyni"; depends=[abind Rcpp RcppArmadillo]; }; LeafArea = derive2 { name="LeafArea"; version="0.1.8"; sha256="0a464bcanq6jfm5j6692h61pipy28vm7m89y5i0hrhz7lzpy9x5z"; depends=[]; }; LearnBayes = derive2 { name="LearnBayes"; version="2.15.1"; sha256="0ch54v2zz2yyyk0lvn5rfikdmyz1qh9j1wk3585wl8v58mc0h4cv"; depends=[]; }; - LearnGeom = derive2 { name="LearnGeom"; version="1.4"; sha256="0qalhy4g47ik8cq2m1zajhv79rla8g72dmcwhnizwn6afhm6fnpm"; depends=[]; }; + LearnGeom = derive2 { name="LearnGeom"; version="1.5"; sha256="1pnxiwjkdj78p4hkl1lqagmd937q63yncb45fcra28sa9v9psrcs"; depends=[]; }; LearningRlab = derive2 { name="LearningRlab"; version="1.3"; sha256="14q8pm51yrfpny2wg5l0x02zibh7qn11zkg51igadq3r6256rfd1"; depends=[crayon magick]; }; - LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.3.0"; sha256="19fcyvq2gs6iyks5x2s0xvbxqzvh9h7hpympvyrsx4026zv8x5cz"; depends=[data_table pbapply quanteda stringdist stringi tibble]; }; + LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.3.1"; sha256="1ydkc14hn49z3j1lypjkjnn45gpy5snbdi62q5hksa8733frf9m9"; depends=[data_table pbapply quanteda stringdist stringi tibble]; }; LexisPlotR = derive2 { name="LexisPlotR"; version="0.4.0"; sha256="0vlm8wcaj3755cbxrfb7ybla9znd2cbklw2xwyyn6r9i4c9xsfih"; depends=[dplyr ggplot2 tidyr]; }; LibOPF = derive2 { name="LibOPF"; version="2.6.0"; sha256="0xs4098qd4j1c1vl8x8620xkrfg0iisdzs203djaqb7vqlywmlrn"; depends=[]; }; LiblineaR = derive2 { name="LiblineaR"; version="2.10-8"; sha256="17ykazac7iv02bxl8xg948vhbdr32icdm1v4bk31zmslp4xsk08g"; depends=[]; }; @@ -2245,11 +2307,11 @@ in with self; { LinearRegressionMDE = derive2 { name="LinearRegressionMDE"; version="1.0"; sha256="0nl29l10y5kpds1i4sv7jwizq61fmh5c0zpj8x64qfif4l6y4v0d"; depends=[]; }; LinkageMapView = derive2 { name="LinkageMapView"; version="2.1.2"; sha256="101g4djzkxgxbn87an2vz4s9nwn8gwz7a3p3wg0y4zpdd1pdp716"; depends=[plotrix qtl RColorBrewer]; }; LinkedGASP = derive2 { name="LinkedGASP"; version="1.0"; sha256="1win1yd8y677rmic531dyd29f49p7pr1r3kbjysvv9syi5nkydyj"; depends=[nloptr spBayes]; }; - LinkedMatrix = derive2 { name="LinkedMatrix"; version="1.3.1"; sha256="01rsgk2v1r1jhpkvvhgqqa5lf6qncxy56f7jwfgxfig3dvgjf96r"; depends=[crochet]; }; + LinkedMatrix = derive2 { name="LinkedMatrix"; version="1.4.0"; sha256="0p6qjnrljxnj3c5nynmx563vcqhxj4jf7czqdg750h38gjy8qzxi"; depends=[crochet]; }; LipidMS = derive2 { name="LipidMS"; version="1.1.0"; sha256="193s5pc2dh848hvwwr1jw79yw90l7b9ic396s4jm36187y9nlw7n"; depends=[CHNOSZ enviPick LipidMSdata purrr]; }; LipidMSdata = derive2 { name="LipidMSdata"; version="1.0.0"; sha256="110wvbk59knhsnbv665ji7v0kp4vjn0937k5fg2d724ksy44gxic"; depends=[]; }; Lmoments = derive2 { name="Lmoments"; version="1.3-1"; sha256="0pc63bj9a8hzr5m3yssrc4kin39fffwkl8rggs3sagzr12d4i7bw"; depends=[Rcpp RcppArmadillo]; }; - LncFinder = derive2 { name="LncFinder"; version="1.1.3"; sha256="15zsll766n97q5rf3xvc3m5s7faxiybayxjzyfhsh7q9x12qnnd7"; depends=[caret e1071 seqinr]; }; + LncFinder = derive2 { name="LncFinder"; version="1.1.4"; sha256="04ndxl368glx63pq58mxpyiddj2p84kyi22ylfy1x1x24xmgbdnn"; depends=[caret e1071 seqinr]; }; LncMod = derive2 { name="LncMod"; version="1.1"; sha256="08001y7s93i3k3478jqfh9zsgpq6ym1xmdmldi7s76zbfr1nknvy"; depends=[pheatmap survival]; }; LncPath = derive2 { name="LncPath"; version="1.1"; sha256="1cpsy681yq96867nr9g75xb0dilb016shqlhxpdn5xyiakrgjl4v"; depends=[igraph]; }; LocFDRPois = derive2 { name="LocFDRPois"; version="1.0.0"; sha256="0zzdp9wgwr6wn3grimghpj4vq34x37c8bqg8acfzlzih8frqal3r"; depends=[dplyr ggplot2]; }; @@ -2266,6 +2328,7 @@ in with self; { LongCART = derive2 { name="LongCART"; version="2.0"; sha256="1xpbyz6hqwhbcgjv6fxkry30fhq11nw2r9s3smwik8cw8yiciwl5"; depends=[Formula magic nlme rpart survival survminer]; }; LongMemoryTS = derive2 { name="LongMemoryTS"; version="0.1.0"; sha256="0n378sad8i283vs7q63spdhwpwjly2d5zj15d4v2085j7sc7z8vi"; depends=[fracdiff longmemo mvtnorm partitions Rcpp RcppArmadillo]; }; LoopAnalyst = derive2 { name="LoopAnalyst"; version="1.2-6"; sha256="1gy9v6qiwkwbwp4snif2imf6zn50ffjrig54ln57c5v5pk3phnvv"; depends=[nlme]; }; + LoopDetectR = derive2 { name="LoopDetectR"; version="0.1.2"; sha256="0c65svz9v8z9886awdf9jm3ysk7nc7gk7q2ihpy20fcciiv05b30"; depends=[igraph numDeriv]; }; LoopRig = derive2 { name="LoopRig"; version="0.1.1"; sha256="11rarb9fg8abc4dpd8sd8safqw3v6g8k6rcrg2nw97xppwcz8c6b"; depends=[GenomicRanges IRanges S4Vectors]; }; LotkasLaw = derive2 { name="LotkasLaw"; version="0.0.1.0"; sha256="11kq52yavicimp7ll7ljrs69a5fxf68ydb9md7v6b02iw5mwbmz7"; depends=[]; }; LowRankQP = derive2 { name="LowRankQP"; version="1.0.4"; sha256="0cg8f42s15vphnifw6gnrhxaj6j5hmgbq8xki5mkwjsizd0ch5na"; depends=[]; }; @@ -2276,10 +2339,9 @@ in with self; { M3 = derive2 { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[mapdata maps ncdf4 rgdal]; }; MADPop = derive2 { name="MADPop"; version="1.1.2"; sha256="0hwnkjrc3w9x3gha0y70fidfc587b6gfdhzwzdzrfvxrhsdy05yd"; depends=[BH Rcpp RcppEigen rstan StanHeaders]; }; MAGNAMWAR = derive2 { name="MAGNAMWAR"; version="2.0.4"; sha256="1asr18byrgy6bkpxpmnkczgr3dam6ymf30lw6izq112krc891bg4"; depends=[ape coxme doParallel dplyr foreach iterators lme4 multcomp plyr qqman seqinr survival]; }; - MAINT_Data = derive2 { name="MAINT.Data"; version="2.3.1"; sha256="08gx30r6cldnpr459kbv0y6sa4s7a2jgsjp2givcq7yx7p8a95y0"; depends=[GGally ggplot2 MASS mclust miscTools pcaPP Rcpp RcppEigen robustbase rrcov sn]; }; + MAINT_Data = derive2 { name="MAINT.Data"; version="2.4.1"; sha256="1vqh7yfv2wdijhl3jcvm4am9ap91gapfhzcm48pas83bfmazvpri"; depends=[GGally ggplot2 MASS mclust miscTools pcaPP Rcpp RcppArmadillo robustbase rrcov sn]; }; MALDIquant = derive2 { name="MALDIquant"; version="1.19.3"; sha256="0b7kdz3x4sdq413h1q09l1qhcvdnnwv6fqsqwllks1cd3xy34c57"; depends=[]; }; MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.12"; sha256="1r37x1hnhq246dazc76d17jfjc57khxayswbzvc4md39z8dnbihx"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; - MALDIrppa = derive2 { name="MALDIrppa"; version="1.0.1-2"; sha256="1jl26ndi0zvyq29qjkmdxg9psgwyv8wapd7f0cv4w88d9gk257az"; depends=[lattice MALDIquant robustbase signal wmtsa]; }; MAMS = derive2 { name="MAMS"; version="1.3"; sha256="181i1p84pacl31qsh5vkvyxnca9sx6rabi7cs42w9qpzk2fxcmzj"; depends=[mvtnorm]; }; MAMSE = derive2 { name="MAMSE"; version="0.2-1"; sha256="0spi7fqkxjiw5j0nf7ambcr8kpzdhjzh9y3dk23y1mrk2dgc5dkw"; depends=[]; }; MANCIE = derive2 { name="MANCIE"; version="1.4"; sha256="0940xl3z5bca6hcnj2bj341l79wajilxlxzmyz3dlgrz0b3bbdmm"; depends=[]; }; @@ -2289,7 +2351,7 @@ in with self; { MAPLES = derive2 { name="MAPLES"; version="1.0"; sha256="0hzsh7z1k7qazpxjqbm9842zgdpl51irg7yfd119a7b2sd3a8li9"; depends=[mgcv]; }; MARSS = derive2 { name="MARSS"; version="3.10.12"; sha256="09b0q9aq1y4nrgpvr1xkzibv5xf9qdcaxlz02zl9sv4x1zmpi80w"; depends=[KFAS mvtnorm nlme]; }; MARX = derive2 { name="MARX"; version="0.2"; sha256="1rc87hz719khl8mclbkfdix499nsc4nyihaaavd73nany7iprm02"; depends=[fBasics matlab metRology stabledist tseries]; }; - MASS = derive2 { name="MASS"; version="7.3-51.5"; sha256="1k0m7pa4gb5apzrrkb5kx5d7bmkm2pl5g15vwb6j067hrqahck26"; depends=[]; }; + MASS = derive2 { name="MASS"; version="7.3-52"; sha256="0c4scl7r4m0bikr0wmdrnn7wfzy1vg5v7gsq6bms2vknzs9ymhxp"; depends=[]; }; MASSTIMATE = derive2 { name="MASSTIMATE"; version="1.4"; sha256="1lpmpxgqnczlizx5gwgw96kxqkjqvbjqwf373zkvfmax2pfqr6dn"; depends=[]; }; MAT = derive2 { name="MAT"; version="2.2"; sha256="093axw2zp4i3f6s9621zwibcxrracp77xrc0q5q0m4yv3m35x908"; depends=[Rcpp RcppArmadillo]; }; MATA = derive2 { name="MATA"; version="0.4"; sha256="0x155izylzwajlnlbdnawb3b8gwxd1cx03xb1sqi3w2g50bcljbf"; depends=[]; }; @@ -2304,7 +2366,7 @@ in with self; { MBC = derive2 { name="MBC"; version="0.10-4"; sha256="1fp06xx9jpz5mcxs0yppzzhch9w9c1qbsdbb60r4izrxnrhggpf7"; depends=[energy Matrix]; }; MBCbook = derive2 { name="MBCbook"; version="0.1.1"; sha256="0jmvgyzrahnxfkwdn86k3ffk0zfbbd34ya4zmlnsmp2m9xds7lgn"; depends=[MASS mclust mvtnorm Rmixmod]; }; MBCluster_Seq = derive2 { name="MBCluster.Seq"; version="1.0"; sha256="0xbi2r0g0gzsy05qrq1ljr5f5s3glwxj204vk2f1lgwdx3fd116m"; depends=[]; }; - MBESS = derive2 { name="MBESS"; version="4.6.0"; sha256="1fc2zcjfk9k107bl3fs3wf8fxxrcpwyhiz7j1iv3w6zqf2l4fb88"; depends=[boot gsl lavaan MASS mnormt nlme OpenMx sem semTools]; }; + MBESS = derive2 { name="MBESS"; version="4.8.0"; sha256="14zji1iy7ai3hdxz5jpqbac8q9rp96700bimx24if2s9k6f208x9"; depends=[boot gsl lavaan MASS mnormt nlme OpenMx sem semTools]; }; MBHdesign = derive2 { name="MBHdesign"; version="2.1.6"; sha256="188kx7594qsxq5wnkpzh3xm6rjvsyj5r4hv8kqaa2mcqp5730k1j"; depends=[class geometry mgcv mvtnorm randtoolbox]; }; MBI = derive2 { name="MBI"; version="1.0"; sha256="1lb0sjwa6x360n9a9pagz6yhxh37gxq1fk0f5c3i2sd56ny9jpns"; depends=[]; }; MBNMAdose = derive2 { name="MBNMAdose"; version="0.2.7"; sha256="1r8gz0kpkmgs1czyzwrv018l0z8gypwjdd4gmwbbhhaj84fr3gni"; depends=[checkmate dplyr magrittr R2jags Rdpack reshape2 rjags scales]; }; @@ -2314,6 +2376,7 @@ in with self; { MBmca = derive2 { name="MBmca"; version="0.0.3-5"; sha256="0p7ddpsy4hwkfwyyszidi33qpdg4xllny7g9x24gk782p7kjfgq9"; depends=[chipPCR robustbase]; }; MC2toPath = derive2 { name="MC2toPath"; version="0.0.16"; sha256="0jdn9wpxavn2wrml907v23mfxr62wwjdh7487ihjj59g434ry7wh"; depends=[RNetCDF]; }; MCAvariants = derive2 { name="MCAvariants"; version="2.2"; sha256="012374zm77i8bl4nm3dg97m7x22697ryq1766mhsgh6gl3jgcm66"; depends=[ggplot2 ggrepel gridExtra]; }; + MCBackscattering = derive2 { name="MCBackscattering"; version="0.1.1"; sha256="0vvcqjrh8psl480s4q2830rzm2bwy9mmvk9kipp72lzln51qnha6"; depends=[]; }; MCDA = derive2 { name="MCDA"; version="0.0.20"; sha256="1pzp68dirby5ddwz37kjh9dnmwsbdfi37gfr8pgmngqzgbr9x6dd"; depends=[combinat glpkAPI RColorBrewer Rglpk]; }; MCDM = derive2 { name="MCDM"; version="1.2"; sha256="0r27y9mqvfnv1m0yi2xdyjr4y1s43d5yav960kz2xa732hrrxw01"; depends=[RankAggreg]; }; MCI = derive2 { name="MCI"; version="1.3.3"; sha256="1wn8lcr5sq3697nsmly6syb9jv7p99ks0fy933ff5rx54x3rf9hz"; depends=[]; }; @@ -2323,14 +2386,14 @@ in with self; { MCMC_qpcr = derive2 { name="MCMC.qpcr"; version="1.2.4"; sha256="0v0d43wnq3swbrcsbg9qmwkmk4s50grd6cik4ng5baj2i6i4hd2n"; depends=[coda ggplot2 MCMCglmm]; }; MCMC4Extremes = derive2 { name="MCMC4Extremes"; version="1.1"; sha256="06p6xdbja7vrdq4vnhybpkmyf4rkaihcmy9sc81sb0h2wa21vcq0"; depends=[evir]; }; MCMCglmm = derive2 { name="MCMCglmm"; version="2.29"; sha256="1d37rk10zi2yymsxif9091z9lnav7p4cazjfq29fhj90x8vpifhk"; depends=[ape coda corpcor cubature Matrix tensorA]; }; - MCMCpack = derive2 { name="MCMCpack"; version="1.4-6"; sha256="1ivkm35hkfxgd67hbsga7mghki6np4cfmg719s2sd2d5dy6h3kbb"; depends=[coda lattice MASS mcmc quantreg]; }; + MCMCpack = derive2 { name="MCMCpack"; version="1.4-9"; sha256="1fskidw7fgy65isqk9msmnfk0ygpb97cla84kgmndxakqy4c2i9c"; depends=[coda lattice MASS mcmc quantreg]; }; MCMCprecision = derive2 { name="MCMCprecision"; version="0.4.0"; sha256="0r0qchiv61sk3drrb0rhwsk55gci4w343hd2gsvclrlyb8r9qhaf"; depends=[combinat Matrix Rcpp RcppArmadillo RcppEigen RcppProgress]; }; MCMCtreeR = derive2 { name="MCMCtreeR"; version="1.1"; sha256="00r6f62h7ryil7qxd25icvkqypjjssjsrz4i5sbqsnw5cdy5al8z"; depends=[ape coda sn]; }; MCMCvis = derive2 { name="MCMCvis"; version="0.14.0"; sha256="0j4a749rc5sj4jd000d28llx7kzn0z1n2p565yvsrj92qnja300p"; depends=[coda overlapping rstan]; }; MCPAN = derive2 { name="MCPAN"; version="1.1-21"; sha256="0q1m0xg8825q9zjwxcz2h2n0dyr21q5bk29qbqpdhirlwm6f1a51"; depends=[magic MCMCpack multcomp mvtnorm plyr]; }; MCPMod = derive2 { name="MCPMod"; version="1.0-10.1"; sha256="0j15dpxy62vwbd6pcsvkbpi1nklh0yjzwf53kcmv4jhj0v6xmpp9"; depends=[lattice mvtnorm]; }; MCPModGeneral = derive2 { name="MCPModGeneral"; version="0.1-1"; sha256="0izhbiivlb818ak49hl1f7li1chlyrxk5f80cmw4zkim3l6ddaxq"; depends=[DoseFinding MASS]; }; - MCPModPack = derive2 { name="MCPModPack"; version="0.1"; sha256="110v5gvxc3l138152lzkb98ljrcq5373bykd0dsczc315x4h5wp3"; depends=[devEMF flextable mvtnorm officer Rcpp RcppEigen RcppNumerical shiny shinydashboard]; }; + MCPModPack = derive2 { name="MCPModPack"; version="0.3"; sha256="0g404qj8prh5cqq9v641vwa6kx4p9ja2migyq9n8s5a6g1sxyrnl"; depends=[devEMF flextable mvtnorm officer Rcpp RcppEigen RcppNumerical shiny shinydashboard]; }; MCS = derive2 { name="MCS"; version="0.1.3"; sha256="1kiz1jq1bm2n8f33nsybp5jfrzzl9xbsi3m9l8818ybmph99xms6"; depends=[]; }; MCSim = derive2 { name="MCSim"; version="1.0"; sha256="1nqry41qa5c02an5fxm3y1g3w1vcqjgsy1an95i3szz1w1ndaj14"; depends=[CircStats MASS]; }; MCTM = derive2 { name="MCTM"; version="1.0"; sha256="14xjfskyrqi0m58lkwjfjpss5j7wy3ajr148n526czrrpccg108j"; depends=[]; }; @@ -2347,19 +2410,18 @@ in with self; { MDplot = derive2 { name="MDplot"; version="1.0.1"; sha256="1xijh18hrkb807nfkdr7g642aspn5psc8nw29q387jl5hly2w8s9"; depends=[gplots gtools MASS RColorBrewer]; }; MED = derive2 { name="MED"; version="0.1.0"; sha256="0fy0qmxirkdz5kigy2r7l5czjzws0fhjxy13kv1kqh628ldrp109"; depends=[]; }; MEDITS = derive2 { name="MEDITS"; version="0.1.7"; sha256="0n3llnvpxd4bs1vslhmsahvl9vm0pmbmc94gijss16linpskxxkj"; depends=[ggplot2 hms raster rgdal rgeos sp tibble vegan]; }; - MEDseq = derive2 { name="MEDseq"; version="1.1.0"; sha256="1i6y9vv8f9m5nigqz4i9phcnfq30ihd5g2cfhxq1ky9l0f9bnx9f"; depends=[cluster matrixStats nnet seriation stringdist TraMineR WeightedCluster]; }; + MEDseq = derive2 { name="MEDseq"; version="1.1.1"; sha256="1pd29wjnyffbjhivg567wilqybpqq30ypnj93p1lrf0920ffnvfy"; depends=[cluster matrixStats nnet seriation stringdist TraMineR WeightedCluster]; }; MEGENA = derive2 { name="MEGENA"; version="1.3.7"; sha256="0cr10pmj1n831scz5kgaq3nkglr3imwgc62cxng2dvdxr9991g21"; depends=[BH cluster doParallel foreach fpc ggplot2 ggraph ggrepel igraph Matrix Rcpp reshape]; }; MEMSS = derive2 { name="MEMSS"; version="0.9-3"; sha256="0fq85jrajfwavq2fvsw2x9hknc57wc253zw2vw970f04khfbragd"; depends=[lme4]; }; MEPDF = derive2 { name="MEPDF"; version="3.0"; sha256="15hbp7g5dsdpvi239jm6jn11fn371ir6la31g0flqkilq6sr1sqd"; depends=[gtools mvtnorm plyr pracma]; }; - MESS = derive2 { name="MESS"; version="0.5.6"; sha256="1p0ail3pd5mrw7p9f1hs5vqdirpjdkgs63zpsib60qjhg61l0iy6"; depends=[geeM geepack ggformula ggplot2 glmnet kinship2 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; + MESS = derive2 { name="MESS"; version="0.5.7"; sha256="0c3fs07szzr023pw92drd3a85vqp0ydfh30x235f0cssny1kxlj8"; depends=[geeM geepack ggformula ggplot2 glmnet kinship2 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; MEclustnet = derive2 { name="MEclustnet"; version="1.2.2"; sha256="0rs58dafxngk2lkq14cy14ayjwgnz1gmi12jmi4z74sdj0b3h0gw"; depends=[e1071 ellipse latentnet MASS mvtnorm nnet vegan]; }; MEtest = derive2 { name="MEtest"; version="1.1"; sha256="0dxm3fs0lqnas70a1ckikvjp2ib9rqsknwcs9n9jfsmm1fqhxdpf"; depends=[statmod]; }; MF = derive2 { name="MF"; version="4.3.2"; sha256="1arnhyqf1cjvngygcpqk2g4d52949rhkjmclbaskyxcrvp62qln0"; depends=[]; }; - MFAg = derive2 { name="MFAg"; version="1.6"; sha256="0iy1lmky7nagkm03inn6gv7qzz1jyi7fsgzp9iff0xv6d54kwcls"; depends=[]; }; + MFAg = derive2 { name="MFAg"; version="1.7"; sha256="0cc1p677lsmdyw9x7kzc4prlw70y4rqmygspkvd4r11hrs54m05a"; depends=[]; }; MFDFA = derive2 { name="MFDFA"; version="1.1"; sha256="0nr78p6y4jpg1hrl0h7b7hyvwbr61paf85y3f2dx815x5hscmdhy"; depends=[numbers]; }; MFHD = derive2 { name="MFHD"; version="0.0.1"; sha256="0gb8y297y1x03wy46530psmlawyv4z5dydilk36qcmadlk1wx02k"; depends=[deldir depth depthTools fda_usc matrixStats]; }; - MFKnockoffs = derive2 { name="MFKnockoffs"; version="0.9.1"; sha256="1bcdqfzmllp3dri1phy365wgc9c37wlag65pzljn4p3mf43w10nq"; depends=[corpcor glmnet gtools Matrix Rdsdp RSpectra]; }; - MFPCA = derive2 { name="MFPCA"; version="1.3-4"; sha256="18wbas1g848865di96a19kmv0fsnds7cfv81nwhz6l6q8qmlnkf6"; depends=[abind foreach funData irlba Matrix mgcv plyr]; }; + MFPCA = derive2 { name="MFPCA"; version="1.3-5"; sha256="0w198ygksipgxwl73qnz5l0jv6z2irk0dk3dw66vx5wrd08yvxwg"; depends=[abind foreach funData irlba Matrix mgcv plyr]; }; MFT = derive2 { name="MFT"; version="2.0"; sha256="0n1xws3dw0650037qyqgp600p8cf098qa5hkbncdfdbl0w34qamy"; depends=[]; }; MGBT = derive2 { name="MGBT"; version="1.0.4"; sha256="1x2yqfb5diqkq82j81slh9kxzxgyy67axyqlqjpv237yf8p0djc0"; depends=[]; }; MGDrivE = derive2 { name="MGDrivE"; version="1.5.0"; sha256="1dgmmc34m2pj1l2gkwg85sj4rbhhwyrp8cj4m9b9hlz134n3qgwy"; depends=[R6 Rcpp Rdpack]; }; @@ -2379,16 +2441,16 @@ in with self; { MIDASwrappeR = derive2 { name="MIDASwrappeR"; version="0.5.1"; sha256="07108dg16i20fg6cvsnbflfz65smwk08vjmf1b193zyvhdikwhfm"; depends=[Rcpp]; }; MIDN = derive2 { name="MIDN"; version="1.0"; sha256="08i9zfmaywi5imp36ahjpirlkl55k01x543nz95i089w3sfrsz0g"; depends=[BiasedUrn]; }; MIICD = derive2 { name="MIICD"; version="2.4"; sha256="1xlvhyh3gg77cym10i8hrxm8r1jm4plvny2c4izic6w89snplyq6"; depends=[MASS mstate survival]; }; - MIIVsem = derive2 { name="MIIVsem"; version="0.5.4"; sha256="1fb4xnbp6c3c2dx3jhyqw463ghj4ak8jld148dyrmi9031mqv4fy"; depends=[boot car lavaan Matrix numDeriv]; }; + MIIVsem = derive2 { name="MIIVsem"; version="0.5.5"; sha256="0x4dm9l8hn7hahbdkp0i9azqwr94s33wmk32zmmhgaq4f60wlhcw"; depends=[boot car lavaan Matrix numDeriv]; }; MILC = derive2 { name="MILC"; version="1.0"; sha256="14xsiw5al6kixwvf3ph0dlm8s13gsbqvzb92da6ng3x4iiyb1g0w"; depends=[]; }; - MIMSunit = derive2 { name="MIMSunit"; version="0.8.2"; sha256="1fl7lg4f0dbk9sfrh85ay5pmyfyfmxlsrx5y7x0d86ar76nmk5al"; depends=[caTools dplyr dygraphs ggplot2 lubridate magrittr matlab plyr R_utils RColorBrewer readr signal stringr xts]; }; + MIMSunit = derive2 { name="MIMSunit"; version="0.9.2"; sha256="1dds6vvmqfhjyjiar11jyq406by64rmikgma2rc80xkrhifa94m1"; depends=[caTools dplyr dygraphs ggplot2 lubridate magrittr matlab plyr R_utils RColorBrewer readr shiny signal stringr xts]; }; MIPHENO = derive2 { name="MIPHENO"; version="1.2"; sha256="0hcaq66biv4izszdhqkgxgz91mgkjk1yrwq27fx07a2zmzj44sfv"; depends=[doBy gdata]; }; MIXFIM = derive2 { name="MIXFIM"; version="1.1"; sha256="1xx25b7hfyzynfh3vsqrkriqnqnn173gn8j1vwqmc434c1vy4nx2"; depends=[ggplot2 mvtnorm rstan]; }; MImix = derive2 { name="MImix"; version="1.0"; sha256="033gxr0z2xba0pgckiigblb1xa94wrfmpgv3j122cdynjch44j4r"; depends=[]; }; MInt = derive2 { name="MInt"; version="1.0.1"; sha256="1nk02baainxk7z083yyajxrnadg2y1dnhr51fianibvph1pjjkl6"; depends=[glasso MASS testthat trust]; }; MKLE = derive2 { name="MKLE"; version="0.05"; sha256="00hcihjn3xfkzy0lvb70hl2acjkwk6s3y7l4gprix24shnblvxzi"; depends=[]; }; MKdescr = derive2 { name="MKdescr"; version="0.5"; sha256="0dgdglr173pjlvbh9kd67pl890pnlzlcfm04ax4bdas6gp1cb6j6"; depends=[ggplot2 scales]; }; - MKinfer = derive2 { name="MKinfer"; version="0.4"; sha256="1rs0vjq9d5hhrlw98vxnss4ph8hyqws4wx4wlikfqpp42v96yxl4"; depends=[arrangements boot ggplot2 MKdescr nlme]; }; + MKinfer = derive2 { name="MKinfer"; version="0.5"; sha256="1zb7zcqis8pdqrgz8pivmysl9lsj03zaikxnljyvhvhcpgy6msgb"; depends=[arrangements boot ggplot2 MKdescr nlme]; }; MKmisc = derive2 { name="MKmisc"; version="1.6"; sha256="0x518icdgq4mrc6qm1flb5lpr9y7j9znh0ah3gw2xsbjiplqd323"; depends=[ggplot2 limma RColorBrewer robustbase scales]; }; MKomics = derive2 { name="MKomics"; version="0.5"; sha256="0mr0y1ai3jf3jj4dqvs6xv3clgli7d7lzqk8ya6zah388rqmkg9s"; depends=[limma RColorBrewer robustbase]; }; MKpower = derive2 { name="MKpower"; version="0.4"; sha256="1s9njvdjpqn4i4dxarb9agcdmx9dx1g4icg7mfp8bd6rnslsscn5"; depends=[coin ggplot2 matrixTests MKdescr MKinfer qqplotr]; }; @@ -2403,6 +2465,7 @@ in with self; { MLML2R = derive2 { name="MLML2R"; version="0.3.3"; sha256="1jgk0h3chab831g5nsppgc6p0xplv11j82491iymnxixqfswb08w"; depends=[]; }; MLMOI = derive2 { name="MLMOI"; version="0.1.1"; sha256="0fliax6ajacm2i416xi26qlwg3y7iw8y6hykkz0mcwp7djyn3n6s"; depends=[Rdpack rJava Rmpfr XLConnect]; }; MLModelSelection = derive2 { name="MLModelSelection"; version="1.0"; sha256="1qfy2rfx2nvkwisl9wwllqsq2qhqzsdmrh90z5zn5qs07d0305wn"; depends=[MASS Rcpp RcppArmadillo RcppDist]; }; + MLPA = derive2 { name="MLPA"; version="1.10.0"; sha256="1w8vhvs8ri8iyh068g59chz3mn0wapa4jr1wmhjlzwa2c651q2cx"; depends=[]; }; MLPUGS = derive2 { name="MLPUGS"; version="0.2.0"; sha256="1yda37073g640g1qrkjrwa8hbyq6bjlcw3wpznx0bk5h0639bc0s"; depends=[]; }; MLRShiny = derive2 { name="MLRShiny"; version="0.1.0"; sha256="06zcyz8l4754sjbcql3jd3nq1d2lgj92p5h2bh708z52mww71isw"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; }; MLRShiny2 = derive2 { name="MLRShiny2"; version="0.1.0"; sha256="1ygamp0ldz1i0w2xyi205rpd1gd5asw61l36z06j41ghdyiz1lww"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; }; @@ -2414,23 +2477,24 @@ in with self; { MM2Sdata = derive2 { name="MM2Sdata"; version="1.0.3"; sha256="0hlm6jp8jq38vkszwdgpf30w11l1fhpblg26zv05j50a6whpmhqd"; depends=[Biobase]; }; MM4LMM = derive2 { name="MM4LMM"; version="2.0.2"; sha256="0zcaqxz1yxv2lkp39ly4jkl9wk94k7md5ks5wjk9l1qk7k5q7yx9"; depends=[MASS Matrix Rcpp RcppEigen]; }; MMAC = derive2 { name="MMAC"; version="0.1.2"; sha256="1xwz48iizf0lvmhc7krsraabc49ky85qvgr23w4ip6jzfv4sn1jr"; depends=[]; }; - MMDai = derive2 { name="MMDai"; version="1.4.0"; sha256="0bb7hg8fkmzg87xr1b2hxhy75xi461ks6w12z85k4c77kswfpx3b"; depends=[DirichletReg]; }; + MMDai = derive2 { name="MMDai"; version="2.0.0"; sha256="0b9lksql266sqhxy4k3chz2pcaabgijkp7g0v4pm7ci5v50d4vag"; depends=[]; }; MMDvariance = derive2 { name="MMDvariance"; version="0.0.9"; sha256="1yiqabifym7gdknqrhfnql6qc8p163npzrrckbyqjry3yvkqr5wi"; depends=[Biobase lawstat MASS]; }; MMLR = derive2 { name="MMLR"; version="0.2.0"; sha256="1jc33ani6w54j38kxzk0kfj1hjfk80cil2hdja2hcsk6kqwd431d"; depends=[pracma]; }; MMMS = derive2 { name="MMMS"; version="0.1"; sha256="1a71vs3k16j14zgqfd4v92dq9swrb44n9zww8na6di82nla8afck"; depends=[glmnet survival]; }; + MMRcaseselection = derive2 { name="MMRcaseselection"; version="0.1.0"; sha256="093bp2c988p82wqz0cq9ra4bd06647v12n6yk1rgr2bvvygg1i8f"; depends=[ggplot2]; }; MMVBVS = derive2 { name="MMVBVS"; version="0.8.0"; sha256="08nkhrf62yywpm0nw22pqzlcm72sf4zq44640a7pf57bbzm38ccy"; depends=[ggplot2 Rcpp RcppArmadillo reshape reshape2 rlang]; }; MMWRweek = derive2 { name="MMWRweek"; version="0.1.3"; sha256="1l1ks44v52iggw9nhs56lfj6804yab5b17k8fzrc6h1kvj3vda0s"; depends=[]; }; MMeM = derive2 { name="MMeM"; version="0.1.0"; sha256="1b0wdcyqnliw85il5vnwy9l4x1z42kirbg872hl47plwfrp9gahc"; depends=[jointDiag lme4 MASS Matrix matrixcalc psych stringr]; }; MNLR = derive2 { name="MNLR"; version="0.1.0"; sha256="0q80232ndp7pkklzqdbga1vf51dmsxaivm4ia4wah32rc2c87fqp"; depends=[caret e1071 nnet rmarkdown shiny]; }; - MNLpred = derive2 { name="MNLpred"; version="0.0.2"; sha256="0b3pgy9hqxwzvw61arvz9zlhx1j4fy9qmzwwzxf67b4ybmkzzsgl"; depends=[MASS]; }; + MNLpred = derive2 { name="MNLpred"; version="0.0.3"; sha256="1cs2mnk10amhqgzmvrf7357g8yqsgljx9a7klcnb0bq4rwkpwcxx"; depends=[MASS]; }; MNM = derive2 { name="MNM"; version="1.0-3"; sha256="16b2yrm2kn943vzrr38qhk6qq20a842xv7iiln4is02csijxw2b3"; depends=[ellipse ICS ICSNP SpatialNP]; }; MNP = derive2 { name="MNP"; version="3.1-0"; sha256="06qs2vsmjs6rcpqlwfc1n5y5hzxf7pngbdmiza1wijm9hh54ikh0"; depends=[MASS]; }; MNS = derive2 { name="MNS"; version="1.0"; sha256="0if46a6rw0f2d72wnykkaa5z5b1p2c0r43il6cbwbcnnb3zd8acb"; depends=[doParallel glmnet igraph MASS mvtnorm]; }; MOCCA = derive2 { name="MOCCA"; version="1.4"; sha256="0g70s7hnmrp4sm8gx49vsijj54y4amlcy6axc4k37k4c9g4sdics"; depends=[cclust class clue cluster]; }; - MODIS = derive2 { name="MODIS"; version="1.1.7"; sha256="0k82xs5nladx3jkiar77kag9a36w9fdf6fga924sfsk1i4rrsigb"; depends=[bitops curl devtools mapdata mapedit maps maptools ptw raster rgdal rgeos sf sp]; }; + MODIS = derive2 { name="MODIS"; version="1.2.2"; sha256="0yap72w9i8gc3513lh8m3zfp2cr3v9bw72wazqv5wg0lk61k2lhb"; depends=[bitops curl devtools mapdata mapedit maps maptools ptw raster rgdal rgeos sf sp]; }; MODISSnow = derive2 { name="MODISSnow"; version="0.1.0.0"; sha256="1p0mil074gapw6v8paw9595rzp85hxrfsc65llh0ljalmacwgx04"; depends=[gdalUtils lubridate raster RCurl]; }; MODISTools = derive2 { name="MODISTools"; version="1.1.1"; sha256="0188cffsnpy7nmb0c03i64674xyizx6imkymrwsj3mf9s77wa2v0"; depends=[httr jsonlite memoise raster sf]; }; - MODIStsp = derive2 { name="MODIStsp"; version="1.3.9"; sha256="0zjc8q3zi2i0i7l1bmw558sxdcsjba2lh31i428cy9pd886j5jn3"; depends=[bitops data_table gdalUtils gWidgets gWidgetsRGtk2 httr jsonlite pacman raster rgdal rgeos sp stringr xml2 xts]; }; + MODIStsp = derive2 { name="MODIStsp"; version="1.4.0"; sha256="1jkq7c5sc0bdb4sgxinzdv43lh64psykvscl4fh3a8p052lyb96b"; depends=[bitops data_table gdalUtilities httr jsonlite leaflet mapedit mapview raster sf shiny stringr xml2 xts]; }; MOEADr = derive2 { name="MOEADr"; version="1.1.1"; sha256="0aqkqw5ph5rvsgpasc94i264lxapr37gpjhk4rkkynph2gnvq1zx"; depends=[assertthat FNN]; }; MOLHD = derive2 { name="MOLHD"; version="0.2"; sha256="1lrl24x7iig15jwxigvqm3jdwnxkn948sxmywn6zi2b1a5hqz05k"; depends=[arrangements fields]; }; MOQA = derive2 { name="MOQA"; version="2.0.0"; sha256="17w4iwf38k0r2fiwqr420hkbbz1a3r89sqwnd2yn300zmaz64hpr"; depends=[gplots psych readr]; }; @@ -2447,12 +2511,11 @@ in with self; { MPS = derive2 { name="MPS"; version="2.3.1"; sha256="08yzynznf33y7y3pf7fayks5hi3cdvzwzn8axg7aky5kvi2bfv22"; depends=[]; }; MPSEM = derive2 { name="MPSEM"; version="0.3-6"; sha256="0kw3aixhl5j8nq4lcx65l80v4lihvpa4qd12n2jrc96lnm6mw00b"; depends=[ape MASS]; }; MPTinR = derive2 { name="MPTinR"; version="1.12.0"; sha256="0iv7hy0lmxadw34cq4gsb5i2my8lbvdfp23qadhiw6ca179hgamy"; depends=[Brobdingnag numDeriv Rcpp RcppEigen]; }; - MPTmultiverse = derive2 { name="MPTmultiverse"; version="0.4-0"; sha256="0n46sbbnkg2czqmvz3csqkgrr4gpdjqj6488wb6inlaww55kzc99"; depends=[coda dplyr ggplot2 limSolve magrittr MPTinR purrr readr reshape2 rlang runjags tibble tidyr TreeBUGS]; }; + MPTmultiverse = derive2 { name="MPTmultiverse"; version="0.4-2"; sha256="0fjfj8jk0dk1s3jc9rl9kza6gm5pm6dgsqyk0aq7pir2hrsr3qwy"; depends=[coda dplyr ggplot2 limSolve magrittr MPTinR purrr readr reshape2 rlang runjags tibble tidyr TreeBUGS]; }; MPV = derive2 { name="MPV"; version="1.55"; sha256="127m19q5dq38x2k29rkgvvfidazbmzsarzf9m2sjpx6ay8j8hvpl"; depends=[KernSmooth]; }; MPkn = derive2 { name="MPkn"; version="0.1.0"; sha256="0nvd6sv1wypcmphm0wcymbibcxrqzx3c9s9b191p1pmxyz607vxv"; depends=[]; }; - MPsychoR = derive2 { name="MPsychoR"; version="0.10-7"; sha256="10nphm5dzxha4xb7a21b0nxbqy55fg8k748qax7nq3rj4nfjaml7"; depends=[]; }; + MPsychoR = derive2 { name="MPsychoR"; version="0.10-8"; sha256="19gp2pjy8bllk4pbx139vcydnw04nldfqq9q7291vr5krylfjcqv"; depends=[]; }; MQMF = derive2 { name="MQMF"; version="0.1.0"; sha256="0pg120003zgnxw51agmfjzj8snkb19r1d4hyssxxl5y0ykxk1hn0"; depends=[MASS mvtnorm]; }; - MRCE = derive2 { name="MRCE"; version="2.1"; sha256="12q7mqn2qkgv992df71k1xmli61khhbfm7lw0n7z2l7qqldpiw1n"; depends=[QUIC]; }; MRCV = derive2 { name="MRCV"; version="0.3-3"; sha256="0m29mpsd3kackwrawvahi22j0aghfb12x9j18xk4x1w4bkpiscmf"; depends=[tables]; }; MRFA = derive2 { name="MRFA"; version="0.4"; sha256="1ivzyp3q2nb6h5mhykina75ak7ajfw62rh23yr4pljma7gmr1hhm"; depends=[fields foreach glmnet grplasso plyr randtoolbox]; }; MRFcov = derive2 { name="MRFcov"; version="1.0.37"; sha256="1xh7zlnkr93bdgcfmfvrwjc3rj6mfqsxl2rpbzzm204q7n1dh502"; depends=[caret dplyr ggplot2 glmnet gridExtra igraph magrittr MASS Matrix mgcv pbapply plyr purrr reshape2 sfsmisc]; }; @@ -2461,13 +2524,14 @@ in with self; { MRMR = derive2 { name="MRMR"; version="0.1.4"; sha256="0dgbhlynaaka7mdzl6igwgcdzvy6cm2y8mbxaf9pfla8w3z8y0lq"; depends=[ggplot2 lmtest lubridate plyr reshape2]; }; MRPC = derive2 { name="MRPC"; version="2.2.0"; sha256="1ks23kf273khzidgxg6gzkynxlga8dybfcwfigli9wv0kcrzvdpx"; depends=[bnlearn compositions dynamicTreeCut fastcluster GGally graph gtools Hmisc mice network pcalg psych Rgraphviz sna WGCNA]; }; MRQoL = derive2 { name="MRQoL"; version="1.0"; sha256="0isn4g3jpz7wm99ymrshl6zgkb7iancdzdxl2w98n8fbxsh5z6sw"; depends=[]; }; + MRReg = derive2 { name="MRReg"; version="0.1.1"; sha256="10ijb1814lfizc7gfhckvpqw8ajl2wc7hp0bfla7gc8c1qqhw60v"; depends=[caret ggplot2 igraph]; }; MRS = derive2 { name="MRS"; version="1.2.4"; sha256="1sksg70zb72ys1b7vi8amjaqarmdh8vf2l1rb0rasrlvrip3z3br"; depends=[igraph Rcpp RcppArmadillo]; }; - MRTSampleSize = derive2 { name="MRTSampleSize"; version="0.1.0"; sha256="1f6ivr6cx4irqkry219x4nk6k5zhp3b19axy2xbfc3dx5zixhpjl"; depends=[]; }; + MRTSampleSize = derive2 { name="MRTSampleSize"; version="0.2.0"; sha256="0c5svjsnzbskj7i0l5p7j04gh9rjvw72f6yyazxwcb339vb5mf7z"; depends=[]; }; + MRmediation = derive2 { name="MRmediation"; version="1.0.0"; sha256="1k9lknp0xd501x810lrnlrjshv79yvghs4l2clnx3m7zzkvxni5h"; depends=[fda MASS]; }; MRsurv = derive2 { name="MRsurv"; version="0.2"; sha256="148myzk6r8whkpv1yv59dmdlr2n8vdwmaww165aw696xfjxwq550"; depends=[mvtnorm survival]; }; - MRwarping = derive2 { name="MRwarping"; version="1.0"; sha256="13bcs7rlm4irx7yzdnib558w9014a4chh9xwc010m6pxvxv36qnv"; depends=[boa SemiPar]; }; MSCMT = derive2 { name="MSCMT"; version="1.3.4"; sha256="1vh0i9nxqiy3qdnb7z7cn5kpp2jahdmaqpnv7q5650pkswhwmfpc"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; }; MSCquartets = derive2 { name="MSCquartets"; version="1.0.5"; sha256="0gfbawv7ib31pxmcj8ki67a72jqacm8nlizgk95yg7afjlqiyz8v"; depends=[ape phangorn RandomFieldsUtils Rdpack zipfR]; }; - MSEtool = derive2 { name="MSEtool"; version="1.5.0"; sha256="10kczcv468c9s1blh37bj2cyy8zhszlwg7azvw64w2xmqnc782g4"; depends=[abind coda corpcor DLMtool dplyr gplots MASS mvtnorm RcppEigen reshape2 rmarkdown snowfall TMB]; }; + MSEtool = derive2 { name="MSEtool"; version="2.0.0"; sha256="0fssl4yanb4y9dw0b3gpibb362dmirzmq6m4bgfmm27anvpfjhsm"; depends=[abind coda corpcor DLMtool dplyr gplots MASS mvtnorm RcppEigen reshape2 rmarkdown snowfall TMB]; }; MSG = derive2 { name="MSG"; version="0.4"; sha256="0fdxgqfc87iwqnnrgh7m8bfxh8lv42ffi0xxy4i1rv94aiw8gfr5"; depends=[RColorBrewer]; }; MSGARCH = derive2 { name="MSGARCH"; version="2.42"; sha256="1n5fvj6yx8sfi1vizw89410hc0d37w8mpqfsksdv01pgnfdcs11a"; depends=[coda expm fanplot MASS numDeriv Rcpp RcppArmadillo zoo]; }; MSGLasso = derive2 { name="MSGLasso"; version="2.1"; sha256="1k17vnvzr647pwfbdxrpqcsp34iygq86wf0ns4rq8cj6q5mik1bv"; depends=[]; }; @@ -2475,41 +2539,39 @@ in with self; { MSMwRA = derive2 { name="MSMwRA"; version="1.3"; sha256="0b0fqfv6iick1brqik4rqz2936nfa51i6xlfavs65r9692wks73q"; depends=[]; }; MSPRT = derive2 { name="MSPRT"; version="2.1"; sha256="0c0hhpjpkx8yl5bxqn6nw747jli9fdzkwmi31lzr664r5xinxyf7"; depends=[doParallel foreach ggplot2 iterators nleqslv]; }; MSQC = derive2 { name="MSQC"; version="1.0.2"; sha256="11wcy04cpjlnc71s2svs4lm1cp718dz1p4a1603x6zwpbf22bygn"; depends=[rgl]; }; + MSRDT = derive2 { name="MSRDT"; version="0.1.0"; sha256="1i35zsip6p177k9pnbmvkjdc1hpr6nclhbx2sfah95ls5v6xnzz8"; depends=[dplyr gtools reshape2]; }; MST = derive2 { name="MST"; version="2.2"; sha256="0p833nyq9p0r0hy02f4sy6gv1wm9flj3dxkv73ihy8503r89bbzz"; depends=[Formula MASS partykit survival]; }; - MSbox = derive2 { name="MSbox"; version="1.2.1"; sha256="0lmvpzsw13w18mzi5z85yzify3xsh5sx356ndggfzyl5d5wk7s8g"; depends=[stringr xml2]; }; + MSbox = derive2 { name="MSbox"; version="1.2.2"; sha256="10bm9fgbwn51knclxrya3a5cj9s43wlcvfm2vkfjawamccyiw94q"; depends=[crayon stringr]; }; MScombine = derive2 { name="MScombine"; version="1.4"; sha256="0s3gbf3s5mf00d5mkbqhd9wwnyps7qb4r3zbal8j8nsaspql9nd3"; depends=[plyr]; }; MSwM = derive2 { name="MSwM"; version="1.4"; sha256="1zhfar02s7hm4gjs1flkh9a4526d98hik8bqrksy75758baiqg7l"; depends=[nlme]; }; MTA = derive2 { name="MTA"; version="0.2.0"; sha256="1wic2rw63h2daha23fpyw80x7ywjwqq6rj5jg73iankvdg32mlvm"; depends=[cartography igraph sf sp]; }; MTAR = derive2 { name="MTAR"; version="0.1.1"; sha256="17r2da1hdvs8qvgar87zdl51jy8w30vczcsi6jrq0rdyi1lld641"; depends=[CompQuadForm MASS Matrix]; }; MTDrh = derive2 { name="MTDrh"; version="0.1.0"; sha256="0ass3b90nr4i0y7v30hk8xhq3hj9bxaxcsr4f8wfi0lnvzfv6aaa"; depends=[]; }; - MTE = derive2 { name="MTE"; version="1.0.0"; sha256="009mrl9dgxafl4hrgfzvsfvgx3dljb0rbbs74j2cxc5ray87kp55"; depends=[parcor quantreg]; }; - MTGS = derive2 { name="MTGS"; version="0.1.0"; sha256="0ijcw730xap5c38k8z4d976azwcnygxaiv2ksrad8j8nnvnh5zbd"; depends=[glmnet kernlab MRCE]; }; MTLR = derive2 { name="MTLR"; version="0.2.1"; sha256="070121qn7vmxmxgvzv7ymhk19j9kxks4xa7qpd8vkc2rp3ara4cp"; depends=[Rcpp RcppArmadillo survival]; }; MTPS = derive2 { name="MTPS"; version="0.1.9"; sha256="125ja7wz8fz1w7hfxks7qs524vwk86rp459ahxw9cjnn1qxyv38k"; depends=[class e1071 glmnet MASS rpart]; }; MTS = derive2 { name="MTS"; version="1.0"; sha256="09pypanjmqrvxbrrckydxyyswsgjx4nhb052x4llk7va9w4lbcjs"; depends=[fBasics fGarch mvtnorm Rcpp]; }; MTSYS = derive2 { name="MTSYS"; version="1.2.0"; sha256="04dkan3hxl3difflskp7d1lw1bvxhg4s28ssy2v4m7z7wbpj3v1m"; depends=[]; }; - MUACz = derive2 { name="MUACz"; version="1.0.0"; sha256="0sh5h2qn769bpp8l09mvh1cabr2j1vywaqbj6fci84h8zx5y55fj"; depends=[dplyr epiDisplay ggplot2]; }; + MUACz = derive2 { name="MUACz"; version="2.1.0"; sha256="1d771vb2aimr87kyqj7zkmwarmxcxzbh7mvr396pf2zr3h8wi30c"; depends=[dplyr epiDisplay ggplot2]; }; MUS = derive2 { name="MUS"; version="0.1.6"; sha256="0xid624rz0mvd03iy7ydvmx7gkscvsg4kdbaf2nji54ahai3pmn3"; depends=[]; }; MVA = derive2 { name="MVA"; version="1.0-6"; sha256="09j9frr6jshs6mapqk28bd5jkxnr1ghmmbv6f4zz0lrg81zjizl3"; depends=[HSAUR2]; }; MVB = derive2 { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; }; MVLM = derive2 { name="MVLM"; version="0.1.4"; sha256="1zcj405dc4jbiqw6p0fcbam8yc9d6yjpmrx5wjw5zjvig3iqb91k"; depends=[CompQuadForm]; }; MVN = derive2 { name="MVN"; version="5.8"; sha256="1rk8zrf3bavywv4bca1aqsfrirxkvxh5lfwrnj0g8zncd69bd1fc"; depends=[boot car energy kableExtra magrittr MASS moments mvoutlier nortest plyr psych robustbase]; }; MVNBayesian = derive2 { name="MVNBayesian"; version="0.0.8-11"; sha256="1iaxyp480v91887cn4w3l74907wvbzs3ay4cjgzd8xk2dp47w8bg"; depends=[mvtnorm plyr]; }; - MVNtestchar = derive2 { name="MVNtestchar"; version="1.0.2"; sha256="08zvyx829bd2rxbz2i4fwr4hd34y93zgqsklp42zk2mrvfwbivbg"; depends=[ggplot2 Hmisc]; }; + MVNtestchar = derive2 { name="MVNtestchar"; version="1.1.3"; sha256="0w5008zknrl5r7l4dmj2fbm7vvg2f1wynzf38kabns4j7hb1nmxw"; depends=[ggplot2 Hmisc knitr]; }; MVQuickGraphs = derive2 { name="MVQuickGraphs"; version="0.1.2"; sha256="1937w8y866bsn9kn6a98c91akhm9ddc5dr9wqm51lkbjyz1zm0j1"; depends=[plotrix]; }; MVR = derive2 { name="MVR"; version="1.33.0"; sha256="1ygz47a2p5r5axql5zsxvsn25pcqyxz6mpw50zfmzrcqdrfa3bg8"; depends=[statmod]; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; }; - MVar = derive2 { name="MVar"; version="2.1.2"; sha256="0j8b3q6nanymkdpilwbk9a1a9fvlawxjj91skpmxrx16kb7j2i3w"; depends=[MASS]; }; - MVar_pt = derive2 { name="MVar.pt"; version="2.1.2"; sha256="00kfaz7xfy3if3v2waji6h1xcjsa9pn4b5jn81q38a3yin78wsw6"; depends=[MASS]; }; + MVar = derive2 { name="MVar"; version="2.1.3"; sha256="1zwrdwi7gb6cilv7ynb73rprkig9m0gjmbq9pnnbwmq5fkcq6zml"; depends=[MASS]; }; + MVar_pt = derive2 { name="MVar.pt"; version="2.1.3"; sha256="1lg0npniygf9avi3fsk5g6mrkly1xif8rf91w17hpmvnr0hnz248"; depends=[MASS]; }; MVisAGe = derive2 { name="MVisAGe"; version="0.2.1"; sha256="1plrzzj7cr2hxk1npadvjnk7sanhilh99l5vrkjjh3l6li2ym09b"; depends=[]; }; MWLasso = derive2 { name="MWLasso"; version="1.3.1"; sha256="11lyk46lmjcd60q0mixi41b8ybjgyp1xi18g3ag4450xyhw3r17s"; depends=[]; }; MWRidge = derive2 { name="MWRidge"; version="1.0.0"; sha256="17kvs9npr1ff24z3pv9x2qnfwyy6w3hc7hm60ynzbjlk2rr11xr9"; depends=[glmnet]; }; MWright = derive2 { name="MWright"; version="0.3.2"; sha256="1c57f0wnlhl4gqy17vi93r4fknycvv67b9bifgcvabws390jpx7q"; depends=[cubature]; }; - MXM = derive2 { name="MXM"; version="1.4.6"; sha256="0dxrilf7frxw3ibwssb8ndi4p1xkbxh3wmrn3dpxjsvv46bvsqki"; depends=[bigmemory coxme doParallel dplyr energy foreach geepack Hmisc knitr lme4 MASS nnet ordinal quantreg relations Rfast Rfast2 survival visNetwork]; }; + MXM = derive2 { name="MXM"; version="1.4.8"; sha256="0hhiqsln7i14cbqkfs3dchf0w38hcs58pmfsxp983vnwphdv61sw"; depends=[bigmemory coxme doParallel dplyr energy foreach geepack Hmisc knitr lme4 MASS nnet ordinal quantreg relations Rfast Rfast2 survival visNetwork]; }; MaOEA = derive2 { name="MaOEA"; version="0.5.2"; sha256="1yaa8wr1gr1npqpls5g6mlr9dgjwiyvhk6p1dmjw29f7a4g2cam5"; depends=[e1071 gtools lhs MASS nnet nsga2R randtoolbox reticulate stringr]; }; MaXact = derive2 { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; }; - MachineLearning = derive2 { name="MachineLearning"; version="0.1.4"; sha256="0wrngi2gi2fp7f3dhjk6c4318z1wi7l9dj7j7fnlydp5dv86ls8n"; depends=[arules crayon dplyr formula_tools FSelectorRcpp ggplot2 magrittr NbClust rpart rpart_plot]; }; - MachineShop = derive2 { name="MachineShop"; version="2.2.0"; sha256="04357qgd95c9xjr0xm8791rf650rzkls5brz0gg8z3j1yywfc3x1"; depends=[abind dials foreach ggplot2 kernlab magrittr Matrix nnet party polspline recipes rlang rsample Rsolnp survival tibble]; }; + MachineShop = derive2 { name="MachineShop"; version="2.5.0"; sha256="0awx838zjb2n2b9r32cx9h1cvg3h4x57xsif9hskjp5mba9pk78x"; depends=[abind dials foreach ggplot2 kernlab magrittr Matrix nnet party polspline progress recipes rlang rsample Rsolnp survival tibble]; }; Maeswrap = derive2 { name="Maeswrap"; version="1.7"; sha256="0cnnr5zq7ax1j7dx7ira7iccqppc6qpdjghjarvdb2zj0lf69yyb"; depends=[geometry lattice rgl stringr]; }; MajKMeans = derive2 { name="MajKMeans"; version="0.1.0"; sha256="1zphrxyx3jd6rnh1y1qnc6bip34kfqk1a5ms4ps39gfngznh482m"; depends=[MASS]; }; MakefileR = derive2 { name="MakefileR"; version="1.0"; sha256="1pfjic2lsar8ghbb6byr4rqrs30qrgfih092z4rxdpsiwkk3y7l1"; depends=[magrittr]; }; @@ -2520,7 +2582,7 @@ in with self; { Map2NCBI = derive2 { name="Map2NCBI"; version="1.4"; sha256="1ssqnm9g5p0nnhdyp9dqbbsz3hw8jzdwy0rv3csp8fxm0f1bi1kb"; depends=[rentrez]; }; MapGAM = derive2 { name="MapGAM"; version="1.2-5"; sha256="0ardqsa7smx0syh1l591bm6a1rb7kvcyw3rlb3hkfk8rk4k60qmr"; depends=[colorspace gam maptools sp survival]; }; Mapinguari = derive2 { name="Mapinguari"; version="1.0.0"; sha256="1jfqinfr6wkpmkp4jm9ixgawcywm3n1ni03h6zngvx74saz7kd3g"; depends=[dplyr magrittr raster rgdal rlang stringr testthat]; }; - MareyMap = derive2 { name="MareyMap"; version="1.3.4"; sha256="1wap0syzgd0w3xla2x4bcasn8zzlj63r5yyf9r479nvifjxdqxzz"; depends=[tkrplot]; }; + MareyMap = derive2 { name="MareyMap"; version="1.3.5"; sha256="1k7hnfrlpj06k8v93xsvph0hwy5f99swg5gw07sn85nls03jdnak"; depends=[tkrplot]; }; MargCond = derive2 { name="MargCond"; version="1.0.0"; sha256="07qh1lgy8ds11cwlb4rxkl6aiph91zq29sy27b8wwxalycdgjrg8"; depends=[gee lme4 MASS Matrix]; }; MarginalMediation = derive2 { name="MarginalMediation"; version="0.7.0"; sha256="0jwp8rzv0ghir8k7dfmfrq4rvcqf7xww6va16p3jj2nk3r9hiq0x"; depends=[betareg boot cli crayon furniture magrittr purrr rstudioapi stringr tibble]; }; MarketMatching = derive2 { name="MarketMatching"; version="1.1.2"; sha256="0i3wccclrl7lixny24jif0xvmf6lgmwsgqxc6h5c3mv405cp0h1r"; depends=[bsts CausalImpact data_table doParallel dplyr dtw foreach ggplot2 iterators reshape2 scales zoo]; }; @@ -2528,16 +2590,17 @@ in with self; { MarkowitzR = derive2 { name="MarkowitzR"; version="1.0.2"; sha256="0p234zs7lvi83fv02mijrhp7hmr5cklddayb61krhx1h2hn4gzb9"; depends=[gtools matrixcalc]; }; MaskJointDensity = derive2 { name="MaskJointDensity"; version="1.0"; sha256="0nxhsz57cw96in0sg5xg7sicv920kcnxr2rikn39y2qk4vrw6r78"; depends=[ks MASS np plyr]; }; Massign = derive2 { name="Massign"; version="1.1.0"; sha256="09i32lsrx40rxrnb9alfipfrkipy4mza5nr4gcpn2a5h86ak9290"; depends=[]; }; + MasterBayes = derive2 { name="MasterBayes"; version="2.57"; sha256="0f8rc6799nji03slal27gbmprndy3dby0hhsmg2rm9l4ki44vz2y"; depends=[coda genetics gtools kinship2]; }; MatManlyMix = derive2 { name="MatManlyMix"; version="1.1.1"; sha256="1d2vd5b9lirdybjclxh0nn4mghq64qjj4l8vnj95cni5pfa18a2c"; depends=[]; }; MatSkew = derive2 { name="MatSkew"; version="0.1.5"; sha256="019v2b1r0bvw84xs50smjb3jdz7gd2adz5d84xd8zq43lnml96d1"; depends=[]; }; - MatTransMix = derive2 { name="MatTransMix"; version="0.1.8"; sha256="0090qfkal40kizr2j6jc9sksg5appp5pv3g8f9yp7jqcgb2hpggd"; depends=[]; }; + MatTransMix = derive2 { name="MatTransMix"; version="0.1.10"; sha256="12zd0wgpphnv0j8fw437kilcnmci2wjv046jbzhfa48s9n6xc4rz"; depends=[]; }; MatchIt = derive2 { name="MatchIt"; version="3.0.2"; sha256="1pp91pw2sy9hik4sgn4gcsp40hb01n9pfccrwdcffwji5fd1aavq"; depends=[MASS Matching]; }; MatchLinReg = derive2 { name="MatchLinReg"; version="0.7.3"; sha256="1si0zn6vlgyj08841hfjx8an96a8ipnawl4zbalabmpy7r5bfwx8"; depends=[Hmisc Matching]; }; MatchThem = derive2 { name="MatchThem"; version="0.9.3"; sha256="05m141qn0a9ahraga1lpcjffbddmm70bx9m3javrr9727nnar9wf"; depends=[broom dplyr MatchIt mice survey WeightIt]; }; Matching = derive2 { name="Matching"; version="4.9-7"; sha256="0vgw0nm40bicda2nwgklc27qsjxbqbjpl9yd28hqxj71xfsyqmhr"; depends=[MASS]; }; Matrix = derive2 { name="Matrix"; version="1.2-18"; sha256="06b1rc1vq65b271f2wpzhqkvhng8hwwnvjflzxkng50i52603zzp"; depends=[lattice]; }; Matrix_utils = derive2 { name="Matrix.utils"; version="0.9.8"; sha256="0a5fq1scykqk0kc9j051j6fix6j2dqwz5wbgb0amaxsiywz9vigb"; depends=[grr Matrix]; }; - MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.9.2"; sha256="0s4gxgl6fsy0fnjmsdz4k7p96vl6p00xl9w2fg7v0gikjpz6h5bg"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; + MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.9.4"; sha256="1p98ixz81swvf6d934h4djpgbi46x1hwbhrbxap5ywidplfi322i"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; MatrixEQTL = derive2 { name="MatrixEQTL"; version="2.3"; sha256="10r6h5bidj44kfbwiml9pkysbikqphfb21ig61qnx0qa12xcl6l8"; depends=[]; }; MatrixLDA = derive2 { name="MatrixLDA"; version="0.2"; sha256="0fixq35gp0fzmin75sfld2ln0zvnjgzrhk3b5yi7wdqzp99200yy"; depends=[glasso plyr Rcpp RcppArmadillo]; }; MatrixModels = derive2 { name="MatrixModels"; version="0.4-1"; sha256="0cyfvhci2p1vr2x52ymkyqqs63x1qchn856dh2j94yb93r08x1zy"; depends=[Matrix]; }; @@ -2545,7 +2608,7 @@ in with self; { MaxPro = derive2 { name="MaxPro"; version="4.1-2"; sha256="19a2wp93kx1wkbzd5bvljbm1rr96gr14w4fb0ppbgr2y2a4g8i1v"; depends=[nloptr]; }; MaxSkew = derive2 { name="MaxSkew"; version="1.1"; sha256="0x5x0jpvhp189jnmgh6d1h3ya0dicj5qfcrgr2fhp1v8jjhl125m"; depends=[]; }; MaxentVariableSelection = derive2 { name="MaxentVariableSelection"; version="1.0-3"; sha256="1cmxfdkm5k85b4ivlfy5521hkfj0gq2pb1qlxxklh0fprw87kp9c"; depends=[ggplot2 raster]; }; - MazamaCoreUtils = derive2 { name="MazamaCoreUtils"; version="0.4.3"; sha256="08zfd32xhggswzxj35zsvskyaiqx483pkw57f0i2afx3idz3p0am"; depends=[devtools dplyr futile_logger lubridate magrittr purrr rlang stringr tibble]; }; + MazamaCoreUtils = derive2 { name="MazamaCoreUtils"; version="0.4.4"; sha256="06db5xmcimqd0c5kwm2yavrs6dmb5qaflz3wavjhcxdzmhf4lpwh"; depends=[devtools dplyr futile_logger lubridate magrittr purrr rlang rvest stringr tibble xml2]; }; MazamaLocationUtils = derive2 { name="MazamaLocationUtils"; version="0.1.6"; sha256="187lrpc9z3k4jnd1nvqsb0qibz9xz9i1i61vssqm72h1hx1j9j6f"; depends=[digest dplyr geodist httr lubridate magrittr MazamaCoreUtils MazamaSpatialUtils readr revgeo rlang stringr]; }; MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.6.4"; sha256="0wb221h8lwdcx5h5hkvpz9rarizry22qzydibcc2gs6b0d5514ms"; depends=[countrycode dplyr geojsonio lubridate magrittr rgdal rgeos rlang rmapshaper rvest shiny sp stringr xml2]; }; McSpatial = derive2 { name="McSpatial"; version="2.0"; sha256="18nmdzhszqcb5z9g8r9whxgsa0w3g7fk7852sgbahzyw750k95n4"; depends=[lattice locfit maptools quantreg RANN SparseM]; }; @@ -2553,23 +2616,23 @@ in with self; { MeTo = derive2 { name="MeTo"; version="0.1.0"; sha256="14hdyh3p3q8yb9w2li2y9pc356jnymsn6n2750zdsrh52b751lpm"; depends=[lubridate]; }; MedDietCalc = derive2 { name="MedDietCalc"; version="0.1.1"; sha256="11q1yn6l697qa33wqik9y9lji39r6pph109yxkkprg9p80c187xy"; depends=[]; }; MedOr = derive2 { name="MedOr"; version="0.1"; sha256="1rwc14s16lnzgb78ac2017hv9pss7zw7nw3y7vrvq1qx4fgiw6f8"; depends=[]; }; - MedSurvey = derive2 { name="MedSurvey"; version="1.1.1.1.0"; sha256="0acrrj138sf8qivfh0rrflaw76sl6swf4lviwiap2z5i18f3dd17"; depends=[lavaan Matrix survey]; }; + MedSurvey = derive2 { name="MedSurvey"; version="1.1.1.2.0"; sha256="1cxnni1j827pz3v9wb7l15acn9phxs86xxv1031vi5abmal5ngbp"; depends=[lavaan Matrix survey]; }; MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; }; Mediana = derive2 { name="Mediana"; version="1.0.8"; sha256="0j1ikc2iaxl70134v0gijj2i2g0xgjafvn8rc108r9fhm8rpw564"; depends=[doParallel doRNG foreach MASS mvtnorm survival]; }; - Mega2R = derive2 { name="Mega2R"; version="1.0.5"; sha256="18fhkghlx4rkafyx0jpxxyjq20xv6y6sfjyz7m68fi73akjz2rw7"; depends=[AnnotationDbi DBI famSKATRC gdsfmt GenomeInfoDb kinship2 pedgene Rcpp RSQLite SKAT]; }; - MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.4.2"; sha256="0s5d9b66gf4ihbrypbkzkqsws19shw2gbkjrk6cr7l11vw7lfd57"; depends=[ggplot2 iterpc knitr Matrix plotly rjson rmarkdown robustbase]; }; + Mega2R = derive2 { name="Mega2R"; version="1.0.7"; sha256="1x93jf3p1yifw9avhpd2lkm7grc7r655f8jbnhypms4a7nz8fjyi"; depends=[AnnotationDbi DBI famSKATRC gdsfmt GenomeInfoDb kinship2 pedgene Rcpp RSQLite SKAT]; }; + MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.4.3"; sha256="0k90mbidynw8jxm4xr6ys86q7965v27a9z1y8fb07xiqpck1dann"; depends=[ggplot2 iterpc knitr Matrix plotly rjson rmarkdown robustbase]; }; Mercator = derive2 { name="Mercator"; version="0.10.0"; sha256="04hfcg85vs7gkbbgbsymv7xadzzm2rvypw5awnxrnfmdhwn9r9bk"; depends=[ClassDiscovery cluster dendextend igraph KernSmooth Polychrome Rtsne Thresher]; }; - MergeGUI = derive2 { name="MergeGUI"; version="0.2-1"; sha256="1hx03qv5jyjjmqdvylc3kz5dl5qsdqwlirjbrnxrw7grkgkhygap"; depends=[cairoDevice ggplot2 gWidgetsRGtk2 rpart]; }; MetABEL = derive2 { name="MetABEL"; version="0.2-0"; sha256="0rqjv85mgswrbbp8b8ip6cdmz0cvfy9lm5mcr8a7h38rzgx3g3i3"; depends=[]; }; MetFns = derive2 { name="MetFns"; version="3.2.2"; sha256="15fd2d0yysibi2x43qv6b8i1pa18l7z4n0zpmrqhsmvqkgy8sla0"; depends=[astroFns lubridate plotrix pracma]; }; + MetGen = derive2 { name="MetGen"; version="0.5"; sha256="00yzaicrpwfnxi5mdzwx1ai721vczkkf2yl50q9wwpxhmfx0xbbh"; depends=[chron glmnet MASS]; }; MetNorm = derive2 { name="MetNorm"; version="0.1"; sha256="0vfi3k0yp2dz47gwj1n1avs3ji0a2nlrrljz5d0l66zfh4474jb4"; depends=[]; }; MetProc = derive2 { name="MetProc"; version="1.0.1"; sha256="1z6538pij1rq5wv9s8rjcn0sck15y26asv4vamav8a6s4135ia3q"; depends=[fastcluster gplots]; }; - MetSizeR = derive2 { name="MetSizeR"; version="1.1"; sha256="11hdmpvnszr6pn9ihb3zjy9miksz1fs4piry153z4dic8pjydkax"; depends=[cairoDevice gWidgets gWidgetsRGtk2 MetabolAnalyze mvtnorm]; }; MetaAnalyser = derive2 { name="MetaAnalyser"; version="0.2.1"; sha256="0k58325nb7svihhpga7kdbryr9bi5470qsb8aa5llpiggs8j7sfz"; depends=[DT ggvis rstudioapi shiny]; }; + MetaClean = derive2 { name="MetaClean"; version="0.1.0"; sha256="0nd5da7gg28dfmhjnzm90z8y7nkl9scg847rqj5h18hm7hp8gy4h"; depends=[BiocStyle caret fastAdaboost ggplot2 graph kernlab klaR knitr MLmetrics plotrix randomForest reshape2 Rgraphviz rpart xcms]; }; MetaComp = derive2 { name="MetaComp"; version="1.1.2"; sha256="1yb115qdmf5rxmjl4y7qr0i6668n46scs4yjpfq9bmy3w9i4ji1x"; depends=[Cairo data_table dplyr ggplot2 plyr reshape2]; }; MetaCycle = derive2 { name="MetaCycle"; version="1.2.0"; sha256="1lh1msrcz70p5jixz5j83pqa3cid21y7m1zvlk872k16awmif00k"; depends=[gnm]; }; MetaIntegrator = derive2 { name="MetaIntegrator"; version="2.1.3"; sha256="1763in7zcfr4abhwc0sy27c1qbzbhkyjsasrhwdjjmsc645sqxlx"; depends=[AnnotationDbi Biobase BiocManager boot COCONUT data_table DBI dplyr DT GEOmetadb GEOquery ggplot2 ggpubr gplots HGNChelper httpuv magrittr manhattanly Metrics multtest pheatmap plotly plyr pracma preprocessCore readr reshape2 rmarkdown rmeta Rmisc RMySQL ROCR RSQLite stringr zoo]; }; - MetaLandSim = derive2 { name="MetaLandSim"; version="1.0.6"; sha256="1m7i1y9jmhwa3h3xbqqlskgr216x50jb4wx8n3ynh16hw54n07xi"; depends=[coda e1071 fgui googleVis igraph knitr maptools minpack_lm raster rgeos rgrass7 sp spatstat zipfR]; }; + MetaLandSim = derive2 { name="MetaLandSim"; version="1.0.7"; sha256="1vcwfrw20mjyf926zix530zzr0yw4yydg0i5r5rpddygbz5szd6g"; depends=[coda e1071 fgui googleVis igraph knitr maptools minpack_lm raster rgeos rgrass7 sp spatstat zipfR]; }; MetaLonDA = derive2 { name="MetaLonDA"; version="1.1.8"; sha256="0nalkmsii2anw07r16zcpgafb01l87hgpfr1mwc7nggvhdfp3w2g"; depends=[DESeq2 doParallel edgeR ggplot2 gss metagenomeSeq plyr pracma zoo]; }; MetaPCA = derive2 { name="MetaPCA"; version="0.1.4"; sha256="14g4v3hyxnds4l2q36mpz282yqg8ahgdw3b0qmj0xg17krrf5l2s"; depends=[foreach]; }; MetaPath = derive2 { name="MetaPath"; version="1.0"; sha256="1vvpfv6yc4rd4apqfs2yzm97xxsv43ghwqnjq6w1xrc4pdx2p634"; depends=[Biobase genefilter GSEABase impute]; }; @@ -2596,6 +2659,7 @@ in with self; { MiDA = derive2 { name="MiDA"; version="0.1.2"; sha256="144gxsxqljzskxsw5k0y69ix0pxlfvyyznxkjpf2ng4l47pg11z5"; depends=[caret gbm genefilter limma preprocessCore pROC SQN]; }; MiRAnorm = derive2 { name="MiRAnorm"; version="1.0.0"; sha256="154wv0j82xyc4y5cd2czh0q8kzhgrk6qsn0ahc1zn3fnrzc9fgz0"; depends=[ArgumentCheck cluster dendextend ggplot2 MASS npmv plyr reshape2]; }; MiRKAT = derive2 { name="MiRKAT"; version="1.1.0"; sha256="15ah3zgf67sv0rxw99qvxsfbivni5pkcrmqhf0c3656bjwb397hd"; depends=[CompQuadForm ecodist GUniFrac lme4 MASS Matrix mixtools PearsonDS permute quantreg survival]; }; + MiRNAQCD = derive2 { name="MiRNAQCD"; version="1.1"; sha256="0bxzgk1jiw5jdl39pqm63bggpf7bsav6pj2nyyi59sshbrk7c104"; depends=[ggplot2 pROC]; }; MiRSEA = derive2 { name="MiRSEA"; version="1.1"; sha256="0jpl6ws5yx1qjzdnip9a37nmvx81az4cbsjm57x613qjpwmg6by3"; depends=[]; }; MiSPU = derive2 { name="MiSPU"; version="1.0"; sha256="1l6q0fm5z5i6gigr940h8kc5rka08psmhcprp8grmsxk3qy2kply"; depends=[ape aSPU cluster Rcpp RcppArmadillo vegan]; }; MiST = derive2 { name="MiST"; version="1.0"; sha256="0gqln792gixqfh201xciaygmxbafa0wyv5gpbg9w5zkbbv44wrfk"; depends=[CompQuadForm]; }; @@ -2603,21 +2667,22 @@ in with self; { MicroDatosEs = derive2 { name="MicroDatosEs"; version="0.8.2"; sha256="0k0hmi3ciipizmgjw1i5rrsg34yx21s1msn40vc4qc9s1n4wd8dl"; depends=[readr]; }; MicroMacroMultilevel = derive2 { name="MicroMacroMultilevel"; version="0.4.0"; sha256="1q5cyqr4hdl1wp2isk6p4p084i83kg6hd406wdp1nj9lv5i0xvgw"; depends=[]; }; MicroNiche = derive2 { name="MicroNiche"; version="1.0.0"; sha256="166ci4crkwnnh05rhs5hyrljgm4cdf7gp0ff8kjxjmd60byw80mz"; depends=[ggplot2 reshape2]; }; - MicroStrategyR = derive2 { name="MicroStrategyR"; version="1.0-1"; sha256="0a6bk0wnwx8zy9081n7wb12lidgckrhn350r0q5m6aa82l6l8ihi"; depends=[gWidgetsRGtk2]; }; + MinBAR = derive2 { name="MinBAR"; version="1.1.1"; sha256="12a44lpcpdwf39dfqcng5l253gp54znvv083hzm9xqa3fbrbypca"; depends=[dismo ecospat geosphere lattice latticeExtra maxnet raster rgdal sp]; }; + MinEDfind = derive2 { name="MinEDfind"; version="0.1.3"; sha256="1y0iv92mp7hf14vrj54qd0yvmjrv52jv3vg25kc5q7pml63njkqa"; depends=[ggplot2 gridExtra Iso]; }; MindOnStats = derive2 { name="MindOnStats"; version="0.11"; sha256="13995v4n0hfb53w02jk81pl7nazkvqwwv87y1sr99jr9ppzc08mz"; depends=[]; }; Miney = derive2 { name="Miney"; version="0.1"; sha256="0sgln0653rgglinr8rns5s2az0lgyp9slmynyhhhs265grkhrfj0"; depends=[]; }; Minirand = derive2 { name="Minirand"; version="0.1.3"; sha256="19lib0qh3xfzvpgsskl3yypmjygss0w7pimz0136av0px5b4jran"; depends=[]; }; MissMech = derive2 { name="MissMech"; version="1.0.2"; sha256="1b7i1balfl1cqr3l4l4wxlahk2gmawzv9rhyibwzf0yp60cb1sv9"; depends=[]; }; - MissingDataGUI = derive2 { name="MissingDataGUI"; version="0.2-5"; sha256="0drbm87ka17avg6fmswjilgnz9c3azwd0236s8yfms24k9k77vnd"; depends=[cairoDevice GGally ggplot2 gWidgetsRGtk2 reshape]; }; MitISEM = derive2 { name="MitISEM"; version="1.2"; sha256="0dn398vrxh16gmy7ghh5000dgk7cbhb3gi3myrxp5dfri3ysjxcj"; depends=[mvtnorm]; }; MittagLeffleR = derive2 { name="MittagLeffleR"; version="0.3.0"; sha256="0lp3jazmcg90gp019djr4xx8zwxrrmjidp53rc2v7s122razn9lr"; depends=[stabledist]; }; MixAll = derive2 { name="MixAll"; version="1.5.1"; sha256="1jsh29ygy1n7lbz93ks725li9hnvfa0kp1qik13m72nmgw7g7q5a"; depends=[Rcpp rtkore]; }; MixGHD = derive2 { name="MixGHD"; version="2.3.3"; sha256="16x8pq077w8ikksypr9szy863pwcfzmfa9f13pssb61x7yyqfa2f"; depends=[Bessel cluster e1071 ghyp MASS mixture mvtnorm numDeriv]; }; MixMAP = derive2 { name="MixMAP"; version="1.3.4"; sha256="0gxghym5ghbyxf589hda2fhv5l3x5jvm6i40x5xdwx4hadcn8k9a"; depends=[lme4]; }; MixMatrix = derive2 { name="MixMatrix"; version="0.2.4"; sha256="1bmd99p98brp8nzqhf442py2hmdj2vnzn15qwhrdskh6i0gzaqc4"; depends=[CholWishart Rcpp RcppArmadillo]; }; + MixOptim = derive2 { name="MixOptim"; version="0.1.2"; sha256="14blyb1dqbdb14rby4nrggpqdx6b43lbb2xwi3059biq9mrj3a2x"; depends=[desirability ggplot2 patchwork rlang]; }; MixRF = derive2 { name="MixRF"; version="1.0"; sha256="1av1wx7wmfc3z8a4bc6g3i3b807nc28n3s2rs3yh0rcwq1pfl0ir"; depends=[doParallel foreach lme4 randomForest]; }; MixSAL = derive2 { name="MixSAL"; version="1.0"; sha256="15dymyzfs3bwskaf6xndj291g6nhw7k1q93y1cba55a6fdjh5qz9"; depends=[MASS]; }; - MixSIAR = derive2 { name="MixSIAR"; version="3.1.10"; sha256="0kc0apzl6aq9qjgrnnad78k71g91hzc1d7f3j0s1kpwzax2q6l2l"; depends=[bayesplot coda ggmcmc ggplot2 lattice loo MASS MCMCpack R2jags RColorBrewer reshape reshape2 rjags]; }; + MixSIAR = derive2 { name="MixSIAR"; version="3.1.11"; sha256="1zv5qxbh5vs814r5x33nq5z42m43v9qgvin0q2fdi7gd87hyrpad"; depends=[bayesplot coda ggmcmc ggplot2 lattice loo MASS MCMCpack R2jags RColorBrewer reshape reshape2 splancs]; }; MixSim = derive2 { name="MixSim"; version="1.1-3"; sha256="1mrzbax2inpmhxz26zlybci6ks5q780f10vcy1za638dmkz16fnv"; depends=[MASS]; }; MixedPoisson = derive2 { name="MixedPoisson"; version="2.0"; sha256="0g5mpzj0wda6g46q3cg5mm3x4dvpz9gdclzn2m17l62lzny2i10p"; depends=[gaussquad MASS Rmpfr]; }; MixedPsy = derive2 { name="MixedPsy"; version="1.0.0"; sha256="19cgw82jdkcpkca90bab1k5gcb2prlxm634n4m7yx0p0mj736fha"; depends=[beepr boot brglm lme4 Matrix mnormt]; }; @@ -2626,9 +2691,10 @@ in with self; { MixtureInf = derive2 { name="MixtureInf"; version="1.1"; sha256="12qcflmrpzh4w5b40xq5qicks6p0cwqpf5k84pwabkjb168afddv"; depends=[quadprog]; }; MixtureRegLTIC = derive2 { name="MixtureRegLTIC"; version="1.0.0"; sha256="052gyk4gqv49fa2rxbxnib29f1vjxiw4q8llkfhsv8kw5pw38699"; depends=[]; }; MoBPS = derive2 { name="MoBPS"; version="1.4.87"; sha256="0wzmb02d9b49jrz8a4z28yri2zd8dh016an46h2dkmykr1asxg95"; depends=[]; }; - MoEClust = derive2 { name="MoEClust"; version="1.3.0"; sha256="0aqfbm44p48ywdxpy0x48civ927dd742a7sfxx645l65j99kzcxi"; depends=[lattice matrixStats mclust mvnfast nnet vcd]; }; + MoEClust = derive2 { name="MoEClust"; version="1.3.1"; sha256="1jl0zc6jiay8xmbdjiyyhx7qcq60n1w37kfb6hriajr3phr0ilv8"; depends=[lattice matrixStats mclust mvnfast nnet vcd]; }; MoLE = derive2 { name="MoLE"; version="1.0.1"; sha256="0bq19vwqjn5hl4mw5imkydbp39gal992vnh2dwrq8bb8cmj3qh91"; depends=[]; }; - MoTBFs = derive2 { name="MoTBFs"; version="1.3"; sha256="14rj77g265j04wq3k24byg8i10z9rrsid24kjkfncz5pmrpv1a6g"; depends=[bnlearn ggm lpSolve quadprog]; }; + MoMPCA = derive2 { name="MoMPCA"; version="1.0.0"; sha256="049byaiwxl3h05pvwv9jj94g7dk2nrnba7qgx76hwwfbamvk6n5x"; depends=[doParallel dplyr foreach magrittr Matrix slam tm topicmodels]; }; + MoTBFs = derive2 { name="MoTBFs"; version="1.4"; sha256="1b69wzsy0wnzgbk04x363wb1dfnxz610sn8d28cn2akvf7n8na70"; depends=[bnlearn ggm lpSolve Matrix quadprog]; }; MobileTrigger = derive2 { name="MobileTrigger"; version="0.0.31"; sha256="1zbnxdxh6gr4sgpi10i0pnd85f7i842105jgjswacziqamby6mcy"; depends=[caret ggplot2 kableExtra knitr mailR plyr XML yaml]; }; ModStatR = derive2 { name="ModStatR"; version="1.3.0"; sha256="1wdqkvbycjk4wzzkpc0pyxvxrzqm48xbi8y87nax5l1v5qdfm1n0"; depends=[BioStatR boot ellipse ggplot2 gsl hypergeo jmuOutlier]; }; Modalclust = derive2 { name="Modalclust"; version="0.7"; sha256="0ymzdxp6rh6baih1xm6kj8l8jxjclvnmq0gfp38cl8lpskspb26x"; depends=[class mvtnorm zoo]; }; @@ -2637,17 +2703,17 @@ in with self; { ModelMetrics = derive2 { name="ModelMetrics"; version="1.2.2.2"; sha256="0mrlsw4c5y1vdsqynxr2dcvmhh5h37pnd71jw5a5djpbda9g21jy"; depends=[data_table Rcpp]; }; Modelcharts = derive2 { name="Modelcharts"; version="0.1.0"; sha256="1jy78kyyh4r13px2d5bm7fra5bkcpimzfji0hmydspkfi3qla37x"; depends=[dplyr plotly]; }; Modeler = derive2 { name="Modeler"; version="3.4.5"; sha256="15gbg5568qj81wp6yy31amb2b7wl1wvlmgpmdp29lvz1p33jx2y1"; depends=[class ClassComparison ClassDiscovery e1071 neuralnet nnet oompaBase randomForest rpart TailRank]; }; - MomTrunc = derive2 { name="MomTrunc"; version="5.87"; sha256="1mnas2vws54h8zzf7f0drnk00rphfxr8g2277gcknbfpr8xkwacz"; depends=[hypergeo mvtnorm Rcpp RcppArmadillo tlrmvnmvt]; }; + MomTrunc = derive2 { name="MomTrunc"; version="5.89"; sha256="0r6p28h2b348l8rr75yp760k18kvan0sns6lmcdbq9r34rmbsc90"; depends=[hypergeo mvtnorm Rcpp RcppArmadillo tlrmvnmvt]; }; Momocs = derive2 { name="Momocs"; version="1.3.0"; sha256="149q4qyplgvcvscg7846m0cjagvby3rj40g9bpx6kvd67arfrl6y"; depends=[cluster dendextend dplyr geometry geomorph ggplot2 jpeg magrittr MASS progress RColorBrewer rgeos sp vegan]; }; - Mondrian = derive2 { name="Mondrian"; version="1.0-0"; sha256="07r64q518diphai951pw4vfaw4sd6bqwhi6q5cp4pcl3aqjynkmj"; depends=[RColorBrewer]; }; - MonetDB_R = derive2 { name="MonetDB.R"; version="1.0.1"; sha256="1r7vki0rrzwcrfg4f2lfx30g614vf2xi62qb1rs21a9j5741lxlx"; depends=[codetools DBI digest]; }; + Mondrian = derive2 { name="Mondrian"; version="1.1.0"; sha256="1x40cdry6dwixwqx10kv42xr4254kj1f17va186haw9m949xn5gd"; depends=[RColorBrewer]; }; + MonetDB_R = derive2 { name="MonetDB.R"; version="2.0.0"; sha256="0b5flc9l4nshy2fmwxbzcsn7pdivwy3x6kic94ppyyiqzz41h0b1"; depends=[codetools DBI digest testthat]; }; MonoInc = derive2 { name="MonoInc"; version="1.1"; sha256="14rykw3bfj0vznz0rw4vsg1k4vanfv9cy867vspw966ncl4bw70h"; depends=[compare doParallel foreach iterators sitar]; }; MonoPoly = derive2 { name="MonoPoly"; version="0.3-10"; sha256="0ls3sjfkinp9c5002ww0xm4l2galf20w2f45nm5irkk9sbqas0jq"; depends=[quadprog]; }; Monte_Carlo_se = derive2 { name="Monte.Carlo.se"; version="0.1.0"; sha256="1d5gp4wvpvrlp82g8k8v668mzhmdlk2pvky34v7hxysap9xgmsqr"; depends=[]; }; MonteCarlo = derive2 { name="MonteCarlo"; version="1.0.6"; sha256="1jwq3by8zfy6sbzahcj5l0vicqn7yyqpb7xhfsaymfspm7xyq6pj"; depends=[abind codetools reshape rlecuyer snow snowfall]; }; Morpho = derive2 { name="Morpho"; version="2.8"; sha256="080ix1j0r67l0y66zq4xzfl8lhd3q4y4hzmmxphxkhmx83rhsik0"; depends=[colorRamps doParallel foreach MASS Matrix Rcpp RcppArmadillo rgl Rvcg]; }; MorseGen = derive2 { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; }; - MortCast = derive2 { name="MortCast"; version="2.1-2"; sha256="0p5cjzrl3yhrbhjr31fm84rj7dl7n65qzccj447ky1lvb4c0v2x1"; depends=[wpp2017]; }; + MortCast = derive2 { name="MortCast"; version="2.3-0"; sha256="0jdfmwz2yd81dz8ks9f79wz5az6j59skvf3cp1rv2122bg5wl7n2"; depends=[wpp2017]; }; MortalityGaps = derive2 { name="MortalityGaps"; version="1.0.0"; sha256="0nfm8xa7gnshrl8hsvmvr3za8nbppp7f7i5h4ni204w7xwvh8jxc"; depends=[crch forecast MASS pbapply]; }; MortalityLaws = derive2 { name="MortalityLaws"; version="1.8.4"; sha256="0sgxkw9f8s3iv6x2clsx6505wjflg6xa3w19m4q6gz8fkbh2sxfv"; depends=[minpack_lm pbapply RCurl tidyr]; }; MortalitySmooth = derive2 { name="MortalitySmooth"; version="2.3.4"; sha256="1clx8gb8jqvxcmfgv0b8jyvh39yrmcmwr472j9g3ymm95m4hr8fq"; depends=[lattice svcm]; }; @@ -2655,6 +2721,7 @@ in with self; { MplusAutomation = derive2 { name="MplusAutomation"; version="0.7-3"; sha256="0sidvznbknc4pdk4w6izpizap2yvbzxbjnmnrxmwj45ypm9pjpqc"; depends=[boot coda data_table digest ggplot2 gsubfn lattice pander plyr rlang texreg xtable]; }; MplusTrees = derive2 { name="MplusTrees"; version="0.1.1"; sha256="1s119p1fgr27rkh671zpzbfnd368m0s1607r8xwgjm0y5ncxwkv7"; depends=[MplusAutomation nlme rpart rpart_plot]; }; Mqrcm = derive2 { name="Mqrcm"; version="1.1"; sha256="15pxrh5i8pm6ckp44mlgq1ld5b1y9kg6vjvis5k812h64gm3aizq"; depends=[Hmisc pch]; }; + MrSGUIDE = derive2 { name="MrSGUIDE"; version="0.1.1"; sha256="09r5dqi4a9fc9hszjwqz0ry96jp80g1f2ibnq3zdngicp3gpm1x9"; depends=[BH magrittr Rcpp RcppArmadillo yaml]; }; MsdeParEst = derive2 { name="MsdeParEst"; version="1.7"; sha256="1zhi1jr30sl7jpsw37lc3akfzixlhm9k2hjkha1pjy5fmd5lddlx"; depends=[MASS moments mvtnorm sde]; }; MtreeRing = derive2 { name="MtreeRing"; version="1.4.2"; sha256="097w65ijhdkag26z39kzqqp7bs3bcx4iqapj3qc8inh0iynhnxp6"; depends=[bmp dplR dplyr imager jpeg magick magrittr measuRing png shiny shinydashboard shinyWidgets spatstat tiff]; }; MuChPoint = derive2 { name="MuChPoint"; version="0.6.1"; sha256="15bqsc7bsjg55qxjwxh58bxbwz61a6wv4xxph994g4020b98l01x"; depends=[capushe Matrix Rcpp shiny]; }; @@ -2664,15 +2731,15 @@ in with self; { MullerPlot = derive2 { name="MullerPlot"; version="0.1.2"; sha256="0am5brdmbh2mw74fbw9nha6h4qlhj8psg3142mql1ad99bd0zg4w"; depends=[RColorBrewer]; }; MultAlloc = derive2 { name="MultAlloc"; version="1.2"; sha256="0c3sqfaa08s8mk4yz77kh6q6v9ic5xp52g9prfw1k2kv4nw1k2qd"; depends=[Rglpk]; }; MultEq = derive2 { name="MultEq"; version="2.3"; sha256="0fshv7i97q8j7vzkxrv6f20kpqr1kp9v6pbw50g86h37l0jghj7r"; depends=[]; }; - MultNonParam = derive2 { name="MultNonParam"; version="1.3.3"; sha256="10fkvi4iz9wc7vza2cpqpl85wywbiipbkvbqdxzz7wxr5a3agk2r"; depends=[ICSNP]; }; + MultNonParam = derive2 { name="MultNonParam"; version="1.3.4"; sha256="06cdhm63d8drkx63q6wxq5kgny29ly5547apjaxj08b2dkmfrm4d"; depends=[ICSNP]; }; MultiBD = derive2 { name="MultiBD"; version="0.2.0"; sha256="1qjfr8hx8sr5m8370yzi09r8jnh3i6907wzj3v4h83vmjh81db71"; depends=[BH Rcpp RcppParallel]; }; MultiCNVDetect = derive2 { name="MultiCNVDetect"; version="0.1-1"; sha256="0mfisblw3skm4y8phfg4wa0rdchl01wccarsq79hv63y78pfhh13"; depends=[]; }; MultiFit = derive2 { name="MultiFit"; version="1.0.1"; sha256="1hy2xsmdcsn4jwa06ffymhhd4prxjnqw0jxl77sxq8yb1fc2vk64"; depends=[data_table Rcpp RcppArmadillo]; }; MultiGHQuad = derive2 { name="MultiGHQuad"; version="1.2.0"; sha256="00prkn5awxrh365j1jz312har1x4p8v52a0sqfy00pqr44ncmqqq"; depends=[fastGHQuad Matrix mvtnorm]; }; MultiJoin = derive2 { name="MultiJoin"; version="0.1.1"; sha256="0cfk6yc5jagj9y8xybw6yg0yph4zah2vzaxv0384ad6r0r3x3nm8"; depends=[]; }; + MultiKink = derive2 { name="MultiKink"; version="0.1.0"; sha256="0vi629mjmyrh03g3kx4vl47s52bggdxbq2wrdcf892g7xasbmv2b"; depends=[MASS quantreg]; }; MultiLCIRT = derive2 { name="MultiLCIRT"; version="2.11"; sha256="1qls0qp5fz377h50lvpzq3vkw49i3nvizli98gss50nqci8ssqm4"; depends=[limSolve MASS]; }; - MultiMeta = derive2 { name="MultiMeta"; version="0.1"; sha256="0gj0wk39fqd21xjcah20jk16jlfrcjarspbjk5xv74c9k4p5gmak"; depends=[expm ggplot2 gtable mvtnorm reshape2]; }; - MultiOrd = derive2 { name="MultiOrd"; version="2.4.1"; sha256="09hwd9x0kn1f5p1jiypalvh5akjivhj8v2wh3iaavdf8c2vg04kg"; depends=[corpcor Matrix mvtnorm psych]; }; + MultiOrd = derive2 { name="MultiOrd"; version="2.4.2"; sha256="1g2jcj5sgyv3ap3a0izwi7ad88ssp7vqk1a86brvcas5qzqkjxl0"; depends=[corpcor Matrix mvtnorm psych]; }; MultiPhen = derive2 { name="MultiPhen"; version="2.0.3"; sha256="0razswg4wqsz4q0dvpxp3swmxk82ig8gkyi4vcmxh11nlhb258w3"; depends=[abind epitools HardyWeinberg MASS meta RColorBrewer]; }; MultiRNG = derive2 { name="MultiRNG"; version="1.2.3"; sha256="12nspgk3iy698bik040mlxslysf6j9c9vww5bclsdm81ckymd0ca"; depends=[]; }; MultiRR = derive2 { name="MultiRR"; version="1.1"; sha256="1jrhx3nlqwsv3i6r8fs142llw88qad41rsh0sj1pv1gb928zpvl3"; depends=[lme4 MASS]; }; @@ -2684,7 +2751,7 @@ in with self; { MultinomialCI = derive2 { name="MultinomialCI"; version="1.1"; sha256="0da7afpgb98wrcaif8y7396asp84gc244lq5l4959y6d5g199fhz"; depends=[]; }; MultipleBubbles = derive2 { name="MultipleBubbles"; version="0.2.0"; sha256="047a1pql3jf500gwlap6ws5z7mx0sqmdq6jbql24nl5iypi9jqpf"; depends=[foreach MASS]; }; MultiplierDEA = derive2 { name="MultiplierDEA"; version="0.1.18"; sha256="1d7cqa44yayyhwkl5wkp68b7vxakfnlwkprs811z8c2fmfm8vk5r"; depends=[lpSolveAPI]; }; - MultisiteMediation = derive2 { name="MultisiteMediation"; version="0.0.2"; sha256="1z9nh8iywlsjsrrmpm6h8hcnaqvh93dldn5rhp4wnj3c7db8qscy"; depends=[ggplot2 lme4 MASS psych statmod]; }; + MultisiteMediation = derive2 { name="MultisiteMediation"; version="0.0.3"; sha256="00mjxy6qbhgpwfgkjb14al0pc8n4a9238cjgfikqcrd7agps0z1l"; depends=[ggplot2 lme4 MASS psych statmod]; }; MultivariateRandomForest = derive2 { name="MultivariateRandomForest"; version="1.1.5"; sha256="0mww4x1hqraiyvmw2f9s6h180kplmj36hb7zfg7xlkmgdf4apk8d"; depends=[bootstrap Rcpp]; }; MultiwayRegression = derive2 { name="MultiwayRegression"; version="1.2"; sha256="1w0yd3nwrqpk5nhnrcrd06fbdhg4kizx2p8mpspqnw8qcn970pfl"; depends=[MASS]; }; MvBinary = derive2 { name="MvBinary"; version="1.1"; sha256="1lrrxvphxv4gmlazx67q4bck9373nqylqgkwcjzwb52291a3zyiv"; depends=[mgcv]; }; @@ -2692,7 +2759,7 @@ in with self; { Myrrix = derive2 { name="Myrrix"; version="1.2"; sha256="05x2h4ppjhfm0wlpwyp8ycjg59qj3gv0yqdilxrzb1lkrzln92xb"; depends=[Myrrixjars rJava]; }; Myrrixjars = derive2 { name="Myrrixjars"; version="1.0-2"; sha256="1hhfg83z5kl6l250z3lippx3qc68k1wj1qlfzd6m66rgmk699gyl"; depends=[rJava]; }; N2H4 = derive2 { name="N2H4"; version="0.5.7"; sha256="0wpwcv17jvrjgvr0qhjrjr1i2rdxcga49c1c6m7s58p9wmdi8fg2"; depends=[dplyr httr jsonlite lubridate rvest tibble tidyr xml2]; }; - NACHO = derive2 { name="NACHO"; version="1.0.0"; sha256="0mnkfg45bcnrpxq3q7qpzw8kr5k6kdqd6022n0ld7m3wg9bwxzpb"; depends=[cli crayon dplyr ggbeeswarm ggforce ggplot2 ggrepel knitr magrittr purrr rlang rmarkdown rstudioapi scales sessioninfo shiny shinyWidgets tibble tidyr]; }; + NACHO = derive2 { name="NACHO"; version="1.0.1"; sha256="14xifjfrrpf7mwjqzk9vqnd6hhxf4xm558j7hspjsr5gg0nq6ps6"; depends=[cli crayon dplyr ggbeeswarm ggforce ggplot2 ggrepel knitr magrittr purrr rlang rmarkdown rstudioapi scales sessioninfo shiny shinyWidgets tibble tidyr]; }; NADA = derive2 { name="NADA"; version="1.6-1.1"; sha256="0jp4mqr77cx7q5lff84s6wb0dwjy9mi0jyhbjc5fsx50bdczc3v7"; depends=[survival]; }; NAEPprimer = derive2 { name="NAEPprimer"; version="1.0.1"; sha256="19p1livdnayfcl88f8r9x1vg30x522q8lgx66pfgwpkxjzvrqa2l"; depends=[]; }; NAM = derive2 { name="NAM"; version="1.7.3"; sha256="12d2yjl0af2ailvwk30fswalx1wzyj500qbrhiczsg1vr4rcqhkh"; depends=[Rcpp]; }; @@ -2700,34 +2767,35 @@ in with self; { NB = derive2 { name="NB"; version="0.9"; sha256="1gh42z7lp6g09fsfmikxqzyvqp2874cx3a6vr96w43jfwmgi2diq"; depends=[]; }; NB_MClust = derive2 { name="NB.MClust"; version="1.1.1"; sha256="0hzmrszxgx3pylf9pjjwk2ryjhwz7naxxkhcqpnfjv337vv5dg0i"; depends=[MASS]; }; NBAloveR = derive2 { name="NBAloveR"; version="0.1.3.3"; sha256="0k1f14srzks26x5wnhj8mrfwcq7wgbywcklr804lxsh04h4d6pwp"; depends=[dplyr magrittr tidyr]; }; + NBBttest = derive2 { name="NBBttest"; version="1.0.0"; sha256="165j4smwqz4yra3946nd7ssgfwf7wjpysn22yj0bml36qk9y6vs7"; depends=[gplots gtools]; }; NBDdirichlet = derive2 { name="NBDdirichlet"; version="1.3"; sha256="1657mqwn5i1b0g0gva387zl02vpymn98f71b0p7i7xv033mqnpqw"; depends=[]; }; NBDesign = derive2 { name="NBDesign"; version="1.0.0"; sha256="15iwrhwpx2c72xg2jk743qgm85vfv4yhyi5i6pm84ya8drsij70p"; depends=[MASS PWEALL]; }; - NBLDA = derive2 { name="NBLDA"; version="0.99.0"; sha256="1fd6f43yhwvdb81r0b9hpmna5bphhqcgwiwjkpdyqz4h9cdmsj21"; depends=[ggplot2 sSeq]; }; + NBLDA = derive2 { name="NBLDA"; version="1.0.0"; sha256="0sw84h1mgzhr6vmvxi4smk57r4gplg3kxq38gydcy6ckv2g8nzz2"; depends=[ggplot2]; }; NBPSeq = derive2 { name="NBPSeq"; version="0.3.0"; sha256="0l4ylxhs2k9ww21jjqs67fygk92avdchhx2y1ixzl7yr2yh1y9by"; depends=[qvalue]; }; - NBR = derive2 { name="NBR"; version="0.1.2"; sha256="0czl8n2k354i9bsqsd0fiifap2hpi0nhvdi51s6h321wf7khrv1z"; depends=[nlme]; }; + NBR = derive2 { name="NBR"; version="0.1.3"; sha256="1bh1xwr80qz7qvk3m5ilk9ci03wmjb1bm8qq8kzbg35six6n4har"; depends=[nlme]; }; NBShiny = derive2 { name="NBShiny"; version="0.1.0"; sha256="0hcmdhj26hc3c8d5nb6yb7amv0rbdxywima0l0jqkxipx56idlcx"; depends=[caret dplyr e1071 rhandsontable rmarkdown shiny]; }; NBShiny2 = derive2 { name="NBShiny2"; version="0.1.0"; sha256="0w4f19av8zl220zq3flmlqn86ivikclnsnkd7bc1wafhr12hmygp"; depends=[caret dplyr e1071 rhandsontable rmarkdown shiny]; }; - NCA = derive2 { name="NCA"; version="3.0.2"; sha256="135zh39c19gwka7j4qsnvmr0zy3qld07cqg72mzghspi88v4fi8n"; depends=[doParallel foreach ggplot2 gplots iterators KernSmooth lpSolve quantreg sfa]; }; + NBShiny3 = derive2 { name="NBShiny3"; version="0.1.0"; sha256="1p0n4jpzdaqwpidxairwpgc8qrdvr1r7cammpgnzc6a9ar2hcw1g"; depends=[caret dplyr e1071 rhandsontable rmarkdown shiny]; }; + NCA = derive2 { name="NCA"; version="3.0.3"; sha256="0lijpxm3iy15nadcsclqlslflnkh5jrw6nm65jyzl89ykxl2ddl5"; depends=[doParallel foreach ggplot2 gplots iterators KernSmooth lpSolve quantreg sfa]; }; NCSCopula = derive2 { name="NCSCopula"; version="1.0.1"; sha256="0amxp9daqp9bhz61hrq1dk88ai5xfd5sp3538rf3xwgs6walycr4"; depends=[copula]; }; NCSampling = derive2 { name="NCSampling"; version="1.0"; sha256="0bv93xffnzvbip86b3pg7apxzh3410mxff77q119m0z7f6vm3fam"; depends=[lattice randomForest yaImpute]; }; NCmisc = derive2 { name="NCmisc"; version="1.1.6"; sha256="0ycc7b7z26a922hdjq8p4hjljjh09il24h3023k248pcsnbmka1a"; depends=[proftools]; }; NCutYX = derive2 { name="NCutYX"; version="0.1.0"; sha256="0r2ghnvrbya3p1d8rb5bsnz5v852vvc6rq65yafn2xzr7886wrg2"; depends=[fields glmnet MASS mvtnorm Rcpp RcppEigen]; }; NDP = derive2 { name="NDP"; version="0.1.0"; sha256="0wmld7g4w3d7d8lyj4132h3jpr8ng8kpy4ssqjp8r0lqwif2i86b"; depends=[rmarkdown shiny]; }; - NEArender = derive2 { name="NEArender"; version="1.5"; sha256="006128psqxbyw3z4wqflc4xsir3d641r4flwkxmv836lp7fc2d9a"; depends=[hexbin MASS RColorBrewer ROCR]; }; NEff = derive2 { name="NEff"; version="1.1"; sha256="16ys1fi28kbzg3am9vz1c5pc9x0ac47pl6za04h63lspk99yplzk"; depends=[bit msm]; }; NEpiC = derive2 { name="NEpiC"; version="1.0.1"; sha256="11zf112xcsg3k93vks2fnsflw2v2d56a0bsjpd460d21k3gipfz8"; depends=[igraph PairedData]; }; NFP = derive2 { name="NFP"; version="0.99.3"; sha256="18alq3nb47jyz0dh54y536a0igkfbh2x5nf2jxryfnizr47qc3a5"; depends=[apcluster dplyr ggplot2 graph igraph KEGGgraph magrittr plyr stringr tidyr]; }; NFWdist = derive2 { name="NFWdist"; version="0.1.0"; sha256="0833lg0pd763awrc6ibidwf2ldl79w9lmm5acq4bnpd2hzsx60l8"; depends=[]; }; NGBVS = derive2 { name="NGBVS"; version="0.2.0"; sha256="1k7m7wy54irqci6ccclpylbmz0613ha7r531cji99jb7nkpzl6l0"; depends=[Rfast]; }; - NGSSEML = derive2 { name="NGSSEML"; version="1.0"; sha256="1kwdziv2rdswbjq2rir2a6yw6ldnck1z7hahyywvw0kbm5fkb4zq"; depends=[car dlm fields interp mvtnorm]; }; + NGSSEML = derive2 { name="NGSSEML"; version="2.0"; sha256="0pl40dhjr28b4lbbi758n669k484q7diljbp5095gvzbd71pdh02"; depends=[car dlm fields interp mvtnorm]; }; NHANES = derive2 { name="NHANES"; version="2.1.0"; sha256="0aphv3rakfcfrv2km1xyxpj1bxiazy6gwrvs7lyhxmq468fk4c9a"; depends=[]; }; NHLData = derive2 { name="NHLData"; version="1.0.0"; sha256="0dfqalccbkmqrn3h1z6s78l818c8sqn7d6yc8mg872ygmszryci7"; depends=[]; }; - NHMM = derive2 { name="NHMM"; version="3.10"; sha256="058p0lyizqhdhapvjxk2c7n0bpid340hv1dn0cypy5w12y7zml4s"; depends=[BayesLogit MASS MCMCpack msm Rcpp]; }; + NHMM = derive2 { name="NHMM"; version="3.11"; sha256="1ynxk4dpllb3w8229dmxzjdmf0zh5cgmh3wa55d02disc6yhm77k"; depends=[BayesLogit MASS MCMCpack msm Rcpp]; }; NHMSAR = derive2 { name="NHMSAR"; version="1.17"; sha256="149zzk8apl4zv60xagl8zk3zv1fnrbfijmlwn8c4vypvlfdsr981"; depends=[glasso lars ncvreg ucminf]; }; NHPoisson = derive2 { name="NHPoisson"; version="3.3"; sha256="1i6n59ckcxk1hwyz97jmnv4yb96ianjma6ka8lpz79ivs41jniad"; depends=[car]; }; - NHSRdatasets = derive2 { name="NHSRdatasets"; version="0.1.2"; sha256="0xiqbqq7xjyi1vxza853ylyiq4nqr6y10x8i13c2kj756biz4h1n"; depends=[]; }; + NHSRdatasets = derive2 { name="NHSRdatasets"; version="0.2.0"; sha256="00pcnhmp8i8hqghfm6wrx5zxpv8rz4j6vmxj8f1mg0n85qg08cfd"; depends=[tibble]; }; NIPTeR = derive2 { name="NIPTeR"; version="1.0.2"; sha256="0ll6amqyw33a93xiccihidrnbaqlx1q7kqcd4wks7cvqawd8pgv1"; depends=[Rsamtools S4Vectors sets]; }; - NIRStat = derive2 { name="NIRStat"; version="1.0"; sha256="1hi8201zslp1f7m3jci8q03y3f1zlcck2x3i793l7lsyl7qbzd1z"; depends=[ggplot2 gridExtra mgcv]; }; + NIRStat = derive2 { name="NIRStat"; version="1.1"; sha256="07l4ca7d9q840iy5a80sqafrlv20534jw65wzxs90j2d0jx4acs9"; depends=[ggplot2 gridExtra mgcv]; }; NISTnls = derive2 { name="NISTnls"; version="0.9-13"; sha256="03a1c8a5dr5l5x4wbclnsh3vmx3dy7migfdzdx7d7p3s7hj3ibif"; depends=[]; }; NISTunits = derive2 { name="NISTunits"; version="1.0.1"; sha256="0km9l3k9p35sb1qrhrz4ijjsdihvsp6j7cz5kh46lgf7nn6xdk7a"; depends=[]; }; NITPicker = derive2 { name="NITPicker"; version="1.0.1"; sha256="00jmin7y1bp7a4a1qcvv3rkgiy9qij7gbkxcdgpiyzcs6aaif59z"; depends=[fda fda_usc fdasrvf]; }; @@ -2738,13 +2806,13 @@ in with self; { NLRoot = derive2 { name="NLRoot"; version="1.0"; sha256="1x8mcdgqqrhyykr12bv4hl4wbh1zw2qgpnd2yrm68kb92iy95rh4"; depends=[]; }; NMADiagT = derive2 { name="NMADiagT"; version="0.1.2"; sha256="0fskc3ldfdl17gazpfr2hixy79n7db4c1f5yl1jalhwxiabnxjwp"; depends=[coda ggplot2 imguR ks MASS MCMCpack plotrix Rdpack reshape2 rjags]; }; NMAoutlier = derive2 { name="NMAoutlier"; version="0.1.13"; sha256="0d3mg92ky5mhjz6y1903ssanl1lzq4q22yifgjyq29j9snx0jkx1"; depends=[ggplot2 gridExtra MASS netmeta reshape2]; }; - NMF = derive2 { name="NMF"; version="0.22.0"; sha256="0b2ls3x1nkrnam45hagpys624nzxj3v7kxnp0q216yakvx5h57cq"; depends=[Biobase BiocManager cluster colorspace digest doParallel foreach ggplot2 gridBase pkgmaker RColorBrewer registry reshape2 rngtools stringr]; }; + NMF = derive2 { name="NMF"; version="0.23.0"; sha256="0ls7q9yc9l1z10jphq5a11wkfgcxc3gm3sfjj376zx3vnc0wl30g"; depends=[Biobase BiocManager cluster colorspace digest doParallel foreach ggplot2 gridBase pkgmaker RColorBrewer registry reshape2 rngtools stringr]; }; NMFN = derive2 { name="NMFN"; version="2.0"; sha256="0n5fxqwyvy4c1lr0glilcz1nmwqdc9krkqgqh3nlyv23djby9np5"; depends=[]; }; NMI = derive2 { name="NMI"; version="2.0"; sha256="1rxphy9rhy9zhdiz48dvl9m26x6k681lnyn39lqxs0a6jhrxg7y3"; depends=[]; }; NMOF = derive2 { name="NMOF"; version="2.1-0"; sha256="10dxy35ps8qmyfqhrz0g1yyc30d84wwmf084m94nv0pk87blw7s3"; depends=[]; }; NMVANOVA = derive2 { name="NMVANOVA"; version="1.1.0"; sha256="1jlqyg5vn7j8srvifjghd5a7820kadl8kbwib4qxalrfprq81h8p"; depends=[]; }; NNMIS = derive2 { name="NNMIS"; version="1.0.1"; sha256="1w2i4xlx249p589yqdgbx1ra406ycxw729vbk1lqadbn71m6blaz"; depends=[survival]; }; - NNS = derive2 { name="NNS"; version="0.5.1"; sha256="1mlswbxqinqk5vayfnirrj5q738g76g5h0ws4wnayzcrgqf697a7"; depends=[data_table doParallel dtw rgl stringr]; }; + NNS = derive2 { name="NNS"; version="0.5.4.3"; sha256="1g13h12n2mgnzkq65nrw0s3jayjwyd2z1f3229n25nq29fwca7dy"; depends=[data_table doParallel dtw meboot Rfast rgl stringr tdigest]; }; NNTbiomarker = derive2 { name="NNTbiomarker"; version="0.29.11"; sha256="0sqlf7vzhpmq2g98c2qlrcqn3ba4ycfxbczgcjiqqhqsvgkpacc1"; depends=[magrittr mvbutils shiny stringr xtable]; }; NORMA = derive2 { name="NORMA"; version="0.1"; sha256="193q6dwn8v7k8xq0amjpvb3v6mn7c6agqa487gvjj78dy1qz720a"; depends=[rootSolve]; }; NORMT3 = derive2 { name="NORMT3"; version="1.0-3"; sha256="041s0qwmksy3c7j45n4hhqhq3rv2hncm2fi5srjpwf9fcj5wxypg"; depends=[]; }; @@ -2756,24 +2824,24 @@ in with self; { NPHazardRate = derive2 { name="NPHazardRate"; version="0.1"; sha256="0na4iphva1dadz457ii8kxrhnki2asaxpbwr824rljyrldj9rcgg"; depends=[survival]; }; NPMLENCC = derive2 { name="NPMLENCC"; version="1.0"; sha256="1l11vczs7ijfpqv7i7j8c5sxyfcbipqx00lf75i2c0kf21njv1vx"; depends=[MASS survival]; }; NPMLEcmprsk = derive2 { name="NPMLEcmprsk"; version="3.0"; sha256="0nm88fsxgrfk0j0lmir57bhxy4p8ah503gpj6jdlvjqw862jigiq"; depends=[]; }; - NPMOD = derive2 { name="NPMOD"; version="0.1.0"; sha256="1m3rfgyxdbyr0m5vznav5qk70ch45wz3dc8wccxjcxrcfkn8i18k"; depends=[BSDA clinfun gWidgets nortest pspearman readxl rlang RVAideMemoire]; }; NPMVCP = derive2 { name="NPMVCP"; version="1.1"; sha256="13jpm46abwziq8859jhl6hg1znk3ws1q7g4vlr2jyri3qa6h22dd"; depends=[]; }; NPP = derive2 { name="NPP"; version="0.2.0"; sha256="0zm67b9gs32snsd1knmdmz0ksksdin9cvqrqd94n7g378gdql96y"; depends=[]; }; NPS = derive2 { name="NPS"; version="1.1"; sha256="02idja149a2sj97sks4lhsaflpifyxi6n0rjlcq9993f84szfgsi"; depends=[]; }; NPflow = derive2 { name="NPflow"; version="0.13.3"; sha256="1bgdkm82pmzjv46pkxpvh5ffffmc6q68x5jjl7k330w9vwgx2kf0"; depends=[ellipse fastcluster ggplot2 pheatmap Rcpp RcppArmadillo reshape2 truncnorm]; }; NPsimex = derive2 { name="NPsimex"; version="0.2-1"; sha256="1k9i1f5ckvzdns8f5qnm2zq7qs3wsgzsnfwdz21zmhmi6d0pwchm"; depends=[]; }; + NRejections = derive2 { name="NRejections"; version="1.2.0"; sha256="0lzj7kyn4s8l306a6xwkgkv1z4dlfsr61i902lvdxv4ln4m6a5kq"; depends=[doParallel foreach matrixcalc mvtnorm StepwiseTest]; }; NSM3 = derive2 { name="NSM3"; version="1.14"; sha256="0w6ls6k3m395wka6zl64i0nvxjm9c6b3yyd80f6k9k14lmgivm8p"; depends=[agricolae ash binom BSDA coin combinat fANCOVA gtools Hmisc km_ci MASS metafor nortest np partitions quantreg Rfit SemiPar SuppDists survival waveslim]; }; - NSO1212 = derive2 { name="NSO1212"; version="1.0.0"; sha256="1yk07n9ksbazj27sax5jhs5f84zy80awrvkhziclsqm3h1g3h7w5"; depends=[httr jsonlite]; }; + NSO1212 = derive2 { name="NSO1212"; version="1.1.0"; sha256="0agsabhdx3il284ycycqq9jhkin513ygsfdbjx5l3h88smy8i7f2"; depends=[httr jsonlite]; }; NST = derive2 { name="NST"; version="2.0.4"; sha256="0kwdfqr30av50k1s8sdf7714kzq9z1qrg85c3r7ljzrajj16vnl3"; depends=[ape permute vegan]; }; NSUM = derive2 { name="NSUM"; version="1.0"; sha256="1as4g3v7qlk9wxlpwhg293980jq9gy6qay77bbcrjf481gvkkbp6"; depends=[MASS MCMCpack]; }; NScluster = derive2 { name="NScluster"; version="1.3.4"; sha256="1bkzmm573ic6xrsqbbln865rfw2xnmby632m3jcgamddxppx3fjf"; depends=[]; }; - NTS = derive2 { name="NTS"; version="1.1.0"; sha256="0sjzc42whb9wr0w6r8qis89sjcfqwci5wnm3ndxxvfhg6x6skmi3"; depends=[dlm MASS MSwM Rdpack tensor]; }; + NTS = derive2 { name="NTS"; version="1.1.2"; sha256="02gh9yqflwgqws7a14wwb1y7qx0whw4ss1kkfgh9jp6bxc2dclnf"; depends=[dlm MASS MSwM Rdpack tensor]; }; NUCOMBog = derive2 { name="NUCOMBog"; version="1.0.4.2"; sha256="0s6gm3adc9qdh94pxzgccbxx1f1lbgqyvd4xk37xp6f3b5hwljdz"; depends=[snowfall]; }; + NVCSSL = derive2 { name="NVCSSL"; version="1.0"; sha256="00dpi0b0zm5cfkyb2z8wfkw6xcax2kkplm9rzkvfjz7fchlmkx5r"; depends=[grpreg Matrix plyr]; }; NameNeedle = derive2 { name="NameNeedle"; version="1.2.6"; sha256="0cs65hs6fbkxv8pc2m4394c68nqbahjcryjnhhrhg50wam3y03lq"; depends=[]; }; NanoStringNorm = derive2 { name="NanoStringNorm"; version="1.2.1"; sha256="05r1hvrxwi2mcq3pv6b699291qg120ijad96s5dah2f6cwx7gm7j"; depends=[gdata vsn XML]; }; NatureSounds = derive2 { name="NatureSounds"; version="1.0.3"; sha256="0db7y6213bkmfjr2r3jkdbx0wja778cgnavap03v7fswrl61w61m"; depends=[knitr tuneR]; }; NbClust = derive2 { name="NbClust"; version="3.0"; sha256="1vwb48zy6ln1ddpqmfngii1i80n8qmqyxnzdp6gbaq96lakl3w3c"; depends=[]; }; - NeatMap = derive2 { name="NeatMap"; version="0.3.6.2"; sha256="186y06zrh87q6vixl2da2d6apvcj1zkk79c95k081zj5awmryr9b"; depends=[ggplot2 rgl]; }; NegBinBetaBinreg = derive2 { name="NegBinBetaBinreg"; version="1.0"; sha256="0ryi9gdf4sis77c0qxm6r86mfkk1nq9djs297y64nr6ng3rv9p9d"; depends=[boot Matrix mvtnorm]; }; NestedCategBayesImpute = derive2 { name="NestedCategBayesImpute"; version="1.2.1"; sha256="15j54whvhqy26v1iikpk8ys75d7m5b188ggdzrlgzhjg0f9j45fl"; depends=[coda dplyr Rcpp RcppParallel]; }; NestedCohort = derive2 { name="NestedCohort"; version="1.1-3"; sha256="10hsc6zik8sz2mp6ig3xr6z3bq0c6rlvqkn11pxny17a4n02wapp"; depends=[MASS survival]; }; @@ -2789,31 +2857,33 @@ in with self; { NetSimR = derive2 { name="NetSimR"; version="0.1.0"; sha256="0iadlvc7m78svkjcwx18pk18jg7dv69gm1cvkz8k2a7b1absd9f5"; depends=[]; }; NetSwan = derive2 { name="NetSwan"; version="0.1"; sha256="1mwdy3ahagiifj2bd1ajrafvnxzi74a1x1d3i2laf1hqpz3fbgld"; depends=[igraph]; }; NetWeaver = derive2 { name="NetWeaver"; version="0.0.6"; sha256="058fi3vbp11mbg69n4yp1zf48akfdl6s2p0qpa0v6ngmk2zjk0bq"; depends=[]; }; - NetworkChange = derive2 { name="NetworkChange"; version="0.6"; sha256="0p08fwxf99dybx6rgchjqhl9xym4x0hhmwwvmg3gvj5jm7rb4kj0"; depends=[abind GGally ggplot2 ggrepel ggvis gridExtra igraph MASS MCMCpack mvtnorm network qgraph RColorBrewer reshape rlang Rmpfr sna tidyr]; }; + NetworkChange = derive2 { name="NetworkChange"; version="0.7"; sha256="0d9p52n4krhxy5l3f27xs90jw4am0slvyv3p6q57ba8sbwliafrf"; depends=[abind GGally ggplot2 ggrepel ggvis gridExtra igraph MASS MCMCpack mvtnorm network qgraph RColorBrewer reshape rlang Rmpfr sna tidyr]; }; NetworkComparisonTest = derive2 { name="NetworkComparisonTest"; version="2.2.1"; sha256="0a4v69p1xykzb4s9sqj2bqm333a6sx2j8f8jdnp3l7dlkwg9clqp"; depends=[IsingFit IsingSampler Matrix qgraph reshape2]; }; - NetworkDistance = derive2 { name="NetworkDistance"; version="0.3.2"; sha256="1sd5pnm95l0w3737gyrjxhxvnx4wgz72mw5d5q8vp3vygxagx86h"; depends=[doParallel foreach igraph Matrix network pracma Rcpp RcppArmadillo Rdpack RSpectra]; }; + NetworkDistance = derive2 { name="NetworkDistance"; version="0.3.3"; sha256="0qpwxzhld8ikg0pg7wgl9r7av6aylx8qxqhjn6aq1q75q83rn8fn"; depends=[doParallel foreach graphon igraph Matrix network pracma Rcpp RcppArmadillo Rdpack RSpectra]; }; NetworkExtinction = derive2 { name="NetworkExtinction"; version="0.1.1"; sha256="1958kpdcqp4hhkqmfjg2qnrzhwcmfkbgdriq9iyqmmcr7qm8c1y7"; depends=[broom dplyr ggplot2 magrittr network scales sna tidyr]; }; NetworkInference = derive2 { name="NetworkInference"; version="1.2.4"; sha256="1x63szbns8wf3k89ibk2p66prngw4fr2ckfn1568mnxdwnzvhrb4"; depends=[assertthat checkmate ggplot2 ggrepel Rcpp RcppProgress]; }; + NetworkReg = derive2 { name="NetworkReg"; version="1.0"; sha256="0ymbigvl1n5348g77jqs1bcda00kdqrm7zifc0ibh5mwsrx6cmds"; depends=[Matrix randnet RSpectra]; }; NetworkRiskMeasures = derive2 { name="NetworkRiskMeasures"; version="0.1.4"; sha256="1121ma43jxc4p9rw0sc8w32shf9xrmn5qd1xsqgzr8diymc49zhg"; depends=[dplyr expm ggplot2 Matrix]; }; NetworkSim = derive2 { name="NetworkSim"; version="0.1.0"; sha256="1gvhzlmq46p99wald4pjnv9wxxqdympjkh3bzi98qa7qi84lny7y"; depends=[igraph incgraph]; }; NetworkToolbox = derive2 { name="NetworkToolbox"; version="1.4.0"; sha256="1z7qkcj2djxf9bgdhjk7bgfxhb54m013qcsi421lbdjlppsysm7a"; depends=[corrplot doParallel fdrtool foreach igraph IsingFit MASS Matrix pbapply ppcor psych pwr qgraph R_matlab]; }; NeuralNetTools = derive2 { name="NeuralNetTools"; version="1.5.2"; sha256="0d73rbp8v0k0j8dp4yigan7krhglx6qfbadvyg7nsj67xc00vbfd"; depends=[ggplot2 nnet reshape2 scales tidyr]; }; - NeuralSens = derive2 { name="NeuralSens"; version="0.2.0"; sha256="08hq653mah2yp3fcx6wvv9cy4kb649ydibq12znxn8yhlws9kk3v"; depends=[caret fastDummies ggforce ggplot2 gridExtra Hmisc NeuralNetTools reshape2 scales stringr]; }; + NeuralSens = derive2 { name="NeuralSens"; version="0.2.1"; sha256="0nr060vc30yyff9iydmb3sbj0snjaghk0jbcf8iydh89rcb1m0hk"; depends=[caret fastDummies ggforce ggnewscale ggplot2 gridExtra Hmisc NeuralNetTools reshape2 scales stringr]; }; Newdistns = derive2 { name="Newdistns"; version="2.1"; sha256="1b5njkzj8b0wrvvfv904di0933k9d320gadmfm5zl6pzdp34bh1i"; depends=[AdequacyModel]; }; NewmanOmics = derive2 { name="NewmanOmics"; version="1.0.4"; sha256="1ny1w4kwdgfzm4jsj6mf3k0c10bwzwz4gmpb5vg3qffddly9wfaz"; depends=[oompaBase]; }; NightDay = derive2 { name="NightDay"; version="1.0.1.1"; sha256="1gwwxk428gkvci4dhfb3zikvidalpqkl0q2r6qpm58c12j14jk1h"; depends=[maps]; }; NipponMap = derive2 { name="NipponMap"; version="0.2"; sha256="0jk3zz05vhximbbm15h7ngb0ffxp5w8zhisifipkdgvg1hpi7pb7"; depends=[sf tibble]; }; NitrogenUptake2016 = derive2 { name="NitrogenUptake2016"; version="0.2.3"; sha256="13mh63z3x8yqd31v5a4d10bhzk4y67ac38flwk2msv7qcx37sny6"; depends=[car MASS zoo]; }; NlcOptim = derive2 { name="NlcOptim"; version="0.6"; sha256="121njnbfww6qijbc9x6prw35glyzm18di01qvvjn62z4kgq4f7vi"; depends=[MASS quadprog]; }; - NlinTS = derive2 { name="NlinTS"; version="1.3.8"; sha256="0wbwn33k774ib2849hr39fh89003jwpzimwlj1082zmjvssblc5c"; depends=[Rcpp Rdpack timeSeries]; }; + NlinTS = derive2 { name="NlinTS"; version="1.4.2"; sha256="017y7f7di8bmw0kvbkskv9g4zyaqxk2qxw6bm3nd5llfhgrr6q21"; depends=[Rcpp Rdpack timeSeries]; }; NlsyLinks = derive2 { name="NlsyLinks"; version="2.0.6"; sha256="1kdqifwjkkk4x1ixg3ca6lbqx79ab907nnzwxca5iw721mbk5njg"; depends=[lavaan]; }; Nmisc = derive2 { name="Nmisc"; version="0.3.5"; sha256="1328sfxhkq1lyx8wx2k112iq9lxhg067gnk36vgxpcsq42vdzycr"; depends=[dplyr magrittr purrr rappdirs rlang stringr tibble tidyselect]; }; NobBS = derive2 { name="NobBS"; version="0.1.0"; sha256="0i0jyny1c29knpcl4szqwyxvdc3dqjfk5lf2xvwjdx3qas92w03l"; depends=[coda dplyr magrittr rjags]; }; NoiseFiltersR = derive2 { name="NoiseFiltersR"; version="0.1.0"; sha256="0y90si8f5hsi273g10hw700r72la30hwqlwg59gaq76wqlkm8j0p"; depends=[caret e1071 kknn MASS nnet randomForest rJava rpart RWeka]; }; NominalLogisticBiplot = derive2 { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; }; - NonCompart = derive2 { name="NonCompart"; version="0.4.5"; sha256="0z2iigr8nsyanx9lnf7hq5d5fbnm1kd3ir2scfhaqafxa8y8byq9"; depends=[]; }; + NonCompart = derive2 { name="NonCompart"; version="0.4.7"; sha256="0j0faci2n0hcr136xdbxvlljqcbxv8h5mf99q13ifcw92d7dr85d"; depends=[]; }; NonNorMvtDist = derive2 { name="NonNorMvtDist"; version="1.0.2"; sha256="11xqdrx03q3anavyxpzb0hz6mcbdy252rzzjlpa2byfdlrfvn178"; depends=[cubature]; }; - NonProbEst = derive2 { name="NonProbEst"; version="0.2.3"; sha256="0wpqsz06c5v42xijh7imv9fxz9p01354pw7s91sjn6m12w2a2d0z"; depends=[caret e1071 sampling]; }; + NonProbEst = derive2 { name="NonProbEst"; version="0.2.4"; sha256="1w2ihnwwdnxlnphyd26261lsxaknpi51c15rmn9m183djz9gsvdv"; depends=[caret e1071 glmnet Matrix sampling]; }; + NonlinearTSA = derive2 { name="NonlinearTSA"; version="0.4.0"; sha256="1hq068jzl41fazy4j6jj24myszcnl4qhdfmmf1yyc4s56d9p962c"; depends=[car minpack_lm tsDyn]; }; NonpModelCheck = derive2 { name="NonpModelCheck"; version="3.0"; sha256="13qk2wbgpdf763q5xg29p2hxwqpml23pcgxrzmx12vnapnqfh71k"; depends=[dr]; }; Nonpareil = derive2 { name="Nonpareil"; version="3.3.4"; sha256="1hhshcggfv92ll5zqh8hd3pldp07n0684yh1252z2jv2vbl87v3z"; depends=[]; }; NormExpression = derive2 { name="NormExpression"; version="0.1.0"; sha256="1j4q8mb70ig40acfd9kfy12vxdvq3qpf53rxh47kkw8mywnd0449"; depends=[]; }; @@ -2823,14 +2893,14 @@ in with self; { NormalLaplace = derive2 { name="NormalLaplace"; version="0.3-0"; sha256="0njgjdx2yvvy5jb5zn6zr7jdz5hck5bbkicv15z4ai4ibmckqjmh"; depends=[DistributionUtils GeneralizedHyperbolic]; }; NostalgiR = derive2 { name="NostalgiR"; version="1.0.2"; sha256="0rpvwi815sdhaxqpji1y6g0vy8mkn5k6wci0a4jf54pkywwkwrwp"; depends=[txtplot]; }; Nozzle_R1 = derive2 { name="Nozzle.R1"; version="1.1-1"; sha256="05sjip4sz12mwd3jcbvk342p83kdmrd4l2jrh17p18w4l7w4nn0z"; depends=[]; }; - Numero = derive2 { name="Numero"; version="1.4.2"; sha256="1g9jbgygpr22lbikslkdmf7zphrcw826ijkc567av7c96nr9wkib"; depends=[Rcpp]; }; + Numero = derive2 { name="Numero"; version="1.6.0"; sha256="1f27b8zyh3fpsg6qfvlm1nq1ph5fdydxfff0609plr7prafqz85f"; depends=[Rcpp]; }; NutrienTrackeR = derive2 { name="NutrienTrackeR"; version="0.99.2"; sha256="1vzha3ywjbd877fqy3r2xkgi8m44s3ss65bij0vcc4mx8lajhgb5"; depends=[ggplot2]; }; OAIHarvester = derive2 { name="OAIHarvester"; version="0.3-0"; sha256="1c57jxb9n397wdkrirbfh70sxllrg9zsy0np698z7kcx83rz5lqr"; depends=[curl xml2]; }; OBASpatial = derive2 { name="OBASpatial"; version="1.1"; sha256="1a6n440z50v75ms3lmjsa9z7cz0fkmj3k98wsqhq1s7sazd85am4"; depends=[cubature invgamma LaplacesDemon modeest truncdist]; }; OBMbpkg = derive2 { name="OBMbpkg"; version="1.0.0"; sha256="01wch8wwij3fd0jambk0hpkhlnp4ryrq8qnnr2w1iad9zssjyii5"; depends=[]; }; - OBsMD = derive2 { name="OBsMD"; version="5.3"; sha256="10acj6d0nvf1zyirp001c2fhsg2gq33zywnp8w70gm1dk7pgzfzr"; depends=[]; }; - OCA = derive2 { name="OCA"; version="0.1"; sha256="0kaf46gic8gp8f98y68kqvgm1baicwgvarfiwry1j0bd2rjad64d"; depends=[]; }; - OCNet = derive2 { name="OCNet"; version="0.2.0"; sha256="00gyc7wgzqal2cgc5g7ssq1bkl44xsl4ia7s4kis9z4wz0slkj7i"; depends=[fields igraph rgdal rgl sp spam SSN]; }; + OBsMD = derive2 { name="OBsMD"; version="6.1"; sha256="0jvvcx2lc39rdnlbhykam6cf94lbci9zc1vshwfhvygblnmjgrzr"; depends=[]; }; + OCA = derive2 { name="OCA"; version="0.2"; sha256="02kja2ixqv4rcjlkzidwmjplmpkjlzcniabyn39zdi6601hfv1jr"; depends=[]; }; + OCNet = derive2 { name="OCNet"; version="0.3.2"; sha256="1cc0qxxkasn32fdv4rnnpnj9jh3qlwq47695z9dxgqb30yrwfqxz"; depends=[fields igraph rgdal rgl sp spam SSN]; }; ODB = derive2 { name="ODB"; version="1.2.1"; sha256="0frkbl99ilpmppm4fm97lbkqhmjgcwlz9j5vh5nzzcsxrh8qwicn"; depends=[DBI RJDBC]; }; ODEnetwork = derive2 { name="ODEnetwork"; version="1.3.2"; sha256="0wicp0xxqq3jl0kjhc26iqpk8rwa9nv2aiwf18pkgnqxbyw6lgnp"; depends=[checkmate deSolve]; }; ODEsensitivity = derive2 { name="ODEsensitivity"; version="1.1.2"; sha256="0yddv5h3y0xfviqjgrbixawd00jc1rh9ngckfqka5j855vhchh66"; depends=[checkmate deSolve ODEnetwork sensitivity]; }; @@ -2851,7 +2921,9 @@ in with self; { ORCME = derive2 { name="ORCME"; version="2.0.2"; sha256="1pm8ajj24qqj2fir0gjzq5f4mfpl1cnj6fm2z5qg6g3sbnm57ayk"; depends=[Iso]; }; ORDER2PARENT = derive2 { name="ORDER2PARENT"; version="1.0"; sha256="04c80vk6z227w6qsnfls89ig4vqyiiymdarhq1pxa0gpr8j2ssx5"; depends=[Matrix]; }; ORIClust = derive2 { name="ORIClust"; version="1.0-1"; sha256="1biddddyls2zsg71w4innxl0ckfb80q2j9pmd56wvbc0qnbm0w3q"; depends=[]; }; + ORION = derive2 { name="ORION"; version="1.0.1"; sha256="09z1yhiv88nxgig81zwxnwaqwswbql2dhilsln0ksis49p8il3kg"; depends=[doParallel e1071 foreach igraph knitr randomForest rmarkdown TunePareto]; }; ORMDR = derive2 { name="ORMDR"; version="1.3-2"; sha256="0y7b2aja3zvsd6lm7jal9pabcfxv16r2wh0kyzjkdfanvvgk3wmm"; depends=[]; }; + ORdensity = derive2 { name="ORdensity"; version="1.0"; sha256="1g9d85dyfhlqmwsigdn64hifasbvw70g3wpph2h9v2ksvia0cd31"; depends=[cluster distances doParallel doRNG foreach plyr Rfast]; }; OSCV = derive2 { name="OSCV"; version="1.0"; sha256="17wrfak6b6m2l3iqbhdwcfh0rlqb14rkvrbari7v46gya9v7hq20"; depends=[mc2d]; }; OSDR = derive2 { name="OSDR"; version="1.1.3"; sha256="059sj003zsrabmjfhwvvpi599ssrckcqpiw2b3vz405ljnhjmlap"; depends=[]; }; OSMscale = derive2 { name="OSMscale"; version="0.5.1"; sha256="0rjhyhh1iafgd9h1pbd2clyg2sh0gg7y1aqmiislqyn6h6jrvgqn"; depends=[berryFunctions OpenStreetMap sp]; }; @@ -2861,32 +2933,37 @@ in with self; { OTRselect = derive2 { name="OTRselect"; version="1.0"; sha256="1bh14228yz552ngywjf1qyh1isqj4cgiy7n7d4zg8dpqwxr04ykp"; depends=[lars survival]; }; OTUtable = derive2 { name="OTUtable"; version="1.1.2"; sha256="1sm037ihm12xyp7ns5f0c1psflvm1aj3xnsj5nzh2rsjn35hvd6h"; depends=[]; }; OTclust = derive2 { name="OTclust"; version="1.0.2"; sha256="1nrgjn13nbki59i51m28h3z0bppmvcp7qgv09h2r2vvdk858iy9z"; depends=[class ggplot2 magrittr RColorBrewer Rcpp]; }; - OUwie = derive2 { name="OUwie"; version="1.57"; sha256="0faqyvap8jcz6k08k71lszns2h67csgd7q4s12fml153fm3lsjx9"; depends=[ape corHMM corpcor expm geiger lattice nloptr numDeriv paleotree phangorn phytools Rmpfr]; }; + OUwie = derive2 { name="OUwie"; version="2.4"; sha256="0b5bhb6xw5s1xx37b8bgqnq1z05zzsdpcxrg7j72v17l0q7ai51w"; depends=[ape corpcor geiger igraph interp lhs nloptr numDeriv paleotree phangorn phytools RColorBrewer]; }; OWEA = derive2 { name="OWEA"; version="0.1.1"; sha256="00mx94v3krivsxha6sh13xhn2bdj77g8858vc4r2cy23ab4bg0g7"; depends=[gtools MASS shiny]; }; Oarray = derive2 { name="Oarray"; version="1.4-9"; sha256="04jng89s19rd8lbjm76wm4p4ggkffwnsa5qa60c4lwn2rj89a8a1"; depends=[]; }; + OasisR = derive2 { name="OasisR"; version="3.0.2"; sha256="1388ld2nws3ppnkavg8s59q3inqf365c5cf9qvzbj6icmwqs9rdd"; depends=[measurements outliers rgdal rgeos seg spdep]; }; Observation = derive2 { name="Observation"; version="0.2.0"; sha256="0v81manzcvv8x9hbf75c8klslzdabha53rasyba91vvcbrshhq6j"; depends=[AGread svDialogs]; }; OceanView = derive2 { name="OceanView"; version="1.0.5"; sha256="11gq15v3blisplbi6q6jgfsjbnbmfnyxdz8pq1ny9vgljzninvn1"; depends=[plot3D plot3Drgl rgl shape]; }; Ohit = derive2 { name="Ohit"; version="1.0.0"; sha256="132d4drc2phw9ppxnczb1ycdg3dv085k8p6bcaj3v866j0hfxjgb"; depends=[]; }; OjaNP = derive2 { name="OjaNP"; version="1.0-0"; sha256="0xddspnnwlcxh2i66ilh6i920k53y7fv6m1hgj9h28qg2wy0vyah"; depends=[ICS ICSNP Rcpp]; }; + OkNNE = derive2 { name="OkNNE"; version="1.0.0"; sha256="0ggx508cqkqc51qw10cajm8r3k5h474n7y8dgck2fr4db047zmcm"; depends=[FNN]; }; OligoSpecificitySystem = derive2 { name="OligoSpecificitySystem"; version="1.3"; sha256="17mspf1ph2ybv046zckykfdcbrsiz40hrs6ib5mpwkfnrvsp1w7l"; depends=[tkrplot]; }; OmicKriging = derive2 { name="OmicKriging"; version="1.4.0"; sha256="08frr38yf5d0l3zwkbq9465xrbyzsn8sx9icqc3yvfnxrkhrpzig"; depends=[doParallel foreach irlba ROCR]; }; OmicsPLS = derive2 { name="OmicsPLS"; version="1.2.0"; sha256="108rp76g4cy7zaxv9q979rlv4pn9kb5i3f3iz29cdvxm55a55khv"; depends=[ggplot2 magrittr tibble]; }; - Omisc = derive2 { name="Omisc"; version="0.1.2"; sha256="0ww83srfc7vr1gw2aaa5bahs6lvm11j4057hn06pclz1wb6fnbyw"; depends=[copula MASS psych]; }; + Omisc = derive2 { name="Omisc"; version="0.1.3"; sha256="10xg9pn1yr11ngd3l3zykdig8gjp69kcq8300rqml8kb1jlhrrrn"; depends=[copula MASS psych]; }; OmnibusFisher = derive2 { name="OmnibusFisher"; version="1.0"; sha256="0x3q04g45nixgsrl4biqqi6bk4kx79spq5whm3n4ppr0nkv8dw4h"; depends=[CompQuadForm stringr survey]; }; OnAge = derive2 { name="OnAge"; version="1.0.1"; sha256="1zby5sf92c185b5m19jv4ndgbv6mz107nc47zn1d6bijrypzpc20"; depends=[]; }; - OncoBayes2 = derive2 { name="OncoBayes2"; version="0.6-4"; sha256="15l15yz547drhj7j02wq1qiqh74b3fivsmpzabhfc6ipblzil3vs"; depends=[abind assertthat bayesplot BH checkmate dplyr Formula ggplot2 RBesT Rcpp RcppEigen rstan rstantools StanHeaders tibble tidyr]; }; + OncoBayes2 = derive2 { name="OncoBayes2"; version="0.6-5"; sha256="1c8q3kd295hnky7pdd78na92gms5wjs1pjds9smwmpi7lpq0qz3b"; depends=[abind assertthat bayesplot BH checkmate dplyr Formula ggplot2 Rcpp RcppEigen rstan rstantools StanHeaders tibble tidyr]; }; Oncotree = derive2 { name="Oncotree"; version="0.3.3"; sha256="147rc9ci66lxbb91ys2ig40sgmldi15p604yysrd4ccbxpbk2zwf"; depends=[boot]; }; OneArmPhaseTwoStudy = derive2 { name="OneArmPhaseTwoStudy"; version="1.0.3"; sha256="0q8g33s1jq0ipvwq83xhrly8idsh68licgyivxc628zbm1id5p38"; depends=[Rcpp]; }; OneR = derive2 { name="OneR"; version="2.2"; sha256="1k7rzhcwq5b2yi4zfsc1r0yb6w65gxj9835d2a1dclallja3zav2"; depends=[]; }; + OneStep = derive2 { name="OneStep"; version="0.9.0"; sha256="19ndvx1jzdi6jn8sj7sw048pzq8s936icbi45ncvp598lnbwh5br"; depends=[fitdistrplus numDeriv]; }; OneTwoSamples = derive2 { name="OneTwoSamples"; version="1.0-3"; sha256="0019rc2f4jmbm6sinkvalvjqwi822x78aiin88kg8qbbb5ml8l89"; depends=[]; }; + OpVaR = derive2 { name="OpVaR"; version="1.1.1"; sha256="0sb2brwv20ppgsw1x2zz4frkdwhgq8766k8fchr6flp4c4jkkyma"; depends=[actuar evmix MASS pracma ReIns tea truncnorm VineCopula]; }; OpasnetUtils = derive2 { name="OpasnetUtils"; version="1.3"; sha256="0mmn4dpk1wl8slg55xzhpk7jdwhkrka53rwmrsr73sikkh3mcyfn"; depends=[digest ggplot2 httpRequest igraph plyr RCurl reshape2 rgdal rjson sp triangle xtable]; }; OpenCL = derive2 { name="OpenCL"; version="0.2-1"; sha256="1bhnqwrb8phldk5hr06iyvw8fx03x01ddqr4y5zs4a1wpyah7j2w"; depends=[]; }; - OpenImageR = derive2 { name="OpenImageR"; version="1.1.6"; sha256="1yl7xvb86vxyf8d5g58hhmrva0gyg8iabb9npsdlnl8j0bg5gfiw"; depends=[jpeg png R6 Rcpp RcppArmadillo shiny tiff]; }; + OpenImageR = derive2 { name="OpenImageR"; version="1.1.7"; sha256="0yj98wzjqdd1671l7n1cjklj92177hjyqgwxvph22019ijrna9h6"; depends=[jpeg png R6 Rcpp RcppArmadillo shiny tiff]; }; OpenLand = derive2 { name="OpenLand"; version="1.0.1"; sha256="1wa7hkfwvzzj9lm07hdajwf6g8ys3g2ff8vqva3gqwqa9j1fam9n"; depends=[circlize dplyr ggplot2 gridExtra networkD3 raster tidyr]; }; OpenML = derive2 { name="OpenML"; version="1.10"; sha256="132swv22ymm0wxq8y65y2niq8chmga1mnl1lgn6m3cgljvwad47r"; depends=[backports BBmisc checkmate curl data_table digest httr jsonlite memoise stringi XML]; }; OpenMPController = derive2 { name="OpenMPController"; version="0.2-5"; sha256="00hs8v47pr2d726z8izkfrgmayw147hdm16rr9rw1zs3ad216zjj"; depends=[]; }; - OpenMx = derive2 { name="OpenMx"; version="2.17.3"; sha256="1s2pcg281ag3qz2wz8yi826f2d3kj3qg916js7zz0nsrljcyv5bc"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; }; + OpenMx = derive2 { name="OpenMx"; version="2.17.4"; sha256="07y4w7xdb63p5kkrj6sdx1kabbsgbbj7nw9hc690jy84r15aryal"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; }; OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.12"; sha256="02p9b2y99z9yrrm2pl86p0yqwah0yjic2wdcd4k0mhccimmmkaip"; depends=[abind colorspace GPArotation openxlsx plyr psych pvclust rgl stringr XML]; }; + OpenRepGrid_ic = derive2 { name="OpenRepGrid.ic"; version="0.3.0"; sha256="0crhznaqyyjinyd7bzdkjd1zhy4v0mk3g20p1r2490s435vr2hxn"; depends=[dplyr DT formattable igraph magrittr openxlsx reshape2 rintrojs scales shiny shinyBS shinycssloaders shinydashboard shinydashboardPlus shinyFeedback shinyjs shinythemes shinyWidgets stringr testthat tidyr tidyverse]; }; OpenStreetMap = derive2 { name="OpenStreetMap"; version="0.3.4"; sha256="0kyv14lxi86n6aba4jqmsfpmn075k0ki34q6gkkvhq8yv48wg831"; depends=[ggplot2 raster rgdal rJava sp]; }; Opportunistic = derive2 { name="Opportunistic"; version="1.2"; sha256="0kaj11ziij1v65l972x4kbr7vzkx4dwa27ymabiip4dg57a976wr"; depends=[]; }; Opt5PL = derive2 { name="Opt5PL"; version="0.1.1"; sha256="0v3ibfzmkfnkhxylhaqcd3yqygsk7027ga12vb6gj4h4zcccf17f"; depends=[matrixcalc Rcpp]; }; @@ -2904,7 +2981,7 @@ in with self; { Orcs = derive2 { name="Orcs"; version="1.2.1"; sha256="0n693m8z0j4irk9zj6d1gpbn2vhfbfpf7z6iyx19iim3g242823q"; depends=[bookdown knitr lattice latticeExtra plotrix raster Rcpp remotes rgdal sf sp]; }; OrdFacReg = derive2 { name="OrdFacReg"; version="1.0.6"; sha256="16mavsmp6d8rfmimmp5ynwyzir0gycpg8rhd8cwanlrndyclqlpv"; depends=[eha MASS survival]; }; OrdMonReg = derive2 { name="OrdMonReg"; version="1.0.3"; sha256="1xca8pvvq79j484l2rmn4nva8ncx8z51g5diljikck231y8qjqaz"; depends=[]; }; - OrdNor = derive2 { name="OrdNor"; version="2.2.1"; sha256="01w97ssdi6m6sdc0n3rvd9h42nri5ba1kzwb1643pijcgz3vl2b8"; depends=[corpcor GenOrd Matrix mvtnorm]; }; + OrdNor = derive2 { name="OrdNor"; version="2.2.2"; sha256="1zgn3ij1wz3lilgpvcnh0bym5z74qf3g94dk5nrz0a202ck0m0gz"; depends=[corpcor GenOrd Matrix mvtnorm]; }; OrdinalLogisticBiplot = derive2 { name="OrdinalLogisticBiplot"; version="0.4"; sha256="1axn03yrw30r2j9ss5ig9sq857y37vhrr4a7px68jc2az8mng41j"; depends=[MASS mirt NominalLogisticBiplot]; }; OrgMassSpecR = derive2 { name="OrgMassSpecR"; version="0.5-3"; sha256="1dx9d8rb1dfqyhyc26zhfnxiv3rz2ikvs2mwqnsrq3lsjs9dvyc8"; depends=[]; }; OriGen = derive2 { name="OriGen"; version="1.4.3"; sha256="0a7mql87dqxrfx7phgy32hbanfwnjx8x52mj83xf2mgmqhrcikr6"; depends=[ggplot2 maps]; }; @@ -2926,15 +3003,15 @@ in with self; { PAGWAS = derive2 { name="PAGWAS"; version="2.0"; sha256="0bz47ivd32kx1amgqllqbxyyvj773q7wasgk924hmibabiixa8nx"; depends=[foreach lars mnormt]; }; PAMA = derive2 { name="PAMA"; version="0.1.1"; sha256="0iwfak74422gmfciin940rkqg7m2dkzv0d52jrkk0i6z58rhs426"; depends=[mc2d PerMallows]; }; PANDA = derive2 { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster GO_db]; }; - PARSE = derive2 { name="PARSE"; version="0.1.0"; sha256="0y408va1rfn3j8cb1i0k8kypyg9mb6yfj513l54f23z31d3bi45m"; depends=[doParallel foreach gplots mvtnorm]; }; PAS = derive2 { name="PAS"; version="1.2.5"; sha256="175p3bnpnhknfsc29hri0l2ipz1x6qcxs2bq7awns8lccam466r2"; depends=[glmnet]; }; + PASSED = derive2 { name="PASSED"; version="1.0-3"; sha256="1snphwngs9alg114h9m5i84dpg3zpm577kvz8qlrlk37ar1mxalk"; depends=[betareg rootSolve]; }; PASWR = derive2 { name="PASWR"; version="1.1"; sha256="1rxymnqvflypc6m62f5vw65l8x1m2yah7r11hhpmzdq2l2sg8fci"; depends=[e1071 lattice MASS]; }; PASWR2 = derive2 { name="PASWR2"; version="1.0.2"; sha256="04vwgmi56spjriwp2ls5zcgslfg1y4pvwa0m33f9izay0y6q2wfx"; depends=[e1071 ggplot2 lattice]; }; PASenseWear = derive2 { name="PASenseWear"; version="1.0"; sha256="0x84j1vdds4g08birmjxb0c2g1ahwv83bk11532jkmg32dnhmj58"; depends=[ggplot2]; }; - PATHChange = derive2 { name="PATHChange"; version="1.0"; sha256="1pmxhaych01cywx9bb5z0p5lbxcma7x6nlprivpx3gnpg7m9srpg"; depends=[rlist stringr VennDiagram]; }; PAWL = derive2 { name="PAWL"; version="0.5"; sha256="1sx4g4qycba2j1fm0bvhz3hk6ghhdc37rz5zi1njqxrpmbnkqg04"; depends=[foreach ggplot2 mvtnorm reshape]; }; PAmeasures = derive2 { name="PAmeasures"; version="0.1.0"; sha256="0c2pkms06lijly9clxp6zkasqy4zjicdwnvbqwvhp45yavwmkkkj"; depends=[survival]; }; - PAutilities = derive2 { name="PAutilities"; version="0.3.1"; sha256="1jl99z3bwn6n7f3g3xn37z3080gkj7z2aiai3rvvicxcjj9vc3c3"; depends=[clues dplyr equivalence ggplot2 lazyeval lubridate magrittr matchingMarkets reshape2 rlang]; }; + PAsso = derive2 { name="PAsso"; version="0.1.8"; sha256="0lywr5rs2ap8psv6wzm2j6h7wz9xq494y39934xj153nqgccbqrv"; depends=[copBasic copula doParallel dplyr foreach GGally ggplot2 goftest gridExtra MASS pcaPP plotly progress Rcpp tidyverse VGAM]; }; + PAutilities = derive2 { name="PAutilities"; version="1.0.1"; sha256="13k0dkgz82d4iqc7kpz1cw71w1m3bjkar4a7xndms1nj6sp7vp03"; depends=[dplyr equivalence ggplot2 lazyeval lubridate magrittr matchingMarkets Rcpp reshape2 rlang]; }; PBD = derive2 { name="PBD"; version="1.4"; sha256="1n8gq8ms6gszr469hblipbgalc5m7gfiknpsbqywxml62sr4wbsb"; depends=[ade4 ape DDD deSolve phytools]; }; PBIBD = derive2 { name="PBIBD"; version="1.3"; sha256="0zh73bsiwmsqw1vhs2dazndsf0894kfv3vfv88wr4fnh7njysz6r"; depends=[]; }; PBImisc = derive2 { name="PBImisc"; version="1.0"; sha256="18gjp66q6l0w6vsgm6d5sjgpa906z1gyyp6yf58lq5vyg1bnfmcl"; depends=[lme4 Matrix]; }; @@ -2947,7 +3024,7 @@ in with self; { PCA4TS = derive2 { name="PCA4TS"; version="0.1"; sha256="1qi9nlaf5181afrdvddh10a9vxyhry102n3dhai86im8yz4if9y6"; depends=[tseries]; }; PCA4you = derive2 { name="PCA4you"; version="1.2.4"; sha256="117wb0h4jqjymm1p90m6vgj713iavrmj035c2gz5nynligvfnm83"; depends=[mixOmics]; }; PCADSC = derive2 { name="PCADSC"; version="0.8.0"; sha256="0pwkmmnsw3c6ch2k5wdc8ig71994pdp79v3a5aa9n9aq55a8c2ir"; depends=[ggplot2 Matrix pander reshape2]; }; - PCAmatchR = derive2 { name="PCAmatchR"; version="0.1.6"; sha256="0q4cs9212k1rmmgqy6lq99r6zb96iryszwh0d1xvg03gy7v1xn61"; depends=[]; }; + PCAmatchR = derive2 { name="PCAmatchR"; version="0.2.1"; sha256="13q4n4i09g54zrgwaxxsc4hksjh9bhcbmfwp92avz9qi7rdrff4s"; depends=[]; }; PCAmixdata = derive2 { name="PCAmixdata"; version="3.1"; sha256="0flrsnbchwk06dmkg3vqykp9n4pqs265szn1r10navp8ki3rrmvh"; depends=[]; }; PCDSpline = derive2 { name="PCDSpline"; version="1.0"; sha256="15kmvcwvwlsr1107n7mfajvf9b1kcslnhsdx0drjjhsvq193qrqa"; depends=[matrixcalc nleqslv]; }; PCDimension = derive2 { name="PCDimension"; version="1.1.11"; sha256="0kpw0rpb9k82psfpd19vvvsakvm0pcz1n3kkkcihagp1kzlv4xkw"; depends=[changepoint ClassDiscovery cpm kernlab oompaBase]; }; @@ -2956,7 +3033,7 @@ in with self; { PCICt = derive2 { name="PCICt"; version="0.5-4.1"; sha256="17ipmv6ps7c9dv4k9kxjjynnlgr63baz9z9ndwfg0lckc3vw81ya"; depends=[]; }; PCMBase = derive2 { name="PCMBase"; version="1.2.11"; sha256="010188p7f4nr5jxayq02a8q2r23a9w9rd6njxckca99d903cpwg5"; depends=[ape data_table expm ggplot2 mvtnorm xtable]; }; PCMBaseCpp = derive2 { name="PCMBaseCpp"; version="0.1.9"; sha256="0k40mxs8w1vk7qwpkv8gnq6cq3kpj7wvf0i6f1qn1wmm2vvz1kfy"; depends=[abind data_table PCMBase Rcpp RcppArmadillo]; }; - PCMRS = derive2 { name="PCMRS"; version="0.1-1"; sha256="10n4am4qm23aaghf8awv2llcq7392s62yr6mf5h8nf18hfz29wrn"; depends=[cubature ltm mvtnorm Rcpp RcppArmadillo statmod]; }; + PCMRS = derive2 { name="PCMRS"; version="0.1-2"; sha256="1zr2kzwxgr7rifkkmgz9vhq5i9ky6lqrss742vybwl0nx78mad3p"; depends=[cubature ltm mvtnorm Rcpp RcppArmadillo statmod]; }; PCPS = derive2 { name="PCPS"; version="1.0.7"; sha256="0gxymz0yws1q1bxkpxi0lmbv57xx62h3dl7z3i2cnbagswkax3zh"; depends=[ape nlme phylobase picante RcppArmadillo SYNCSA vegan]; }; PCRedux = derive2 { name="PCRedux"; version="1.0-6"; sha256="0s7g6y8iw4w42ihpiqqhbgwaf4fim91pwsp8hh7fh5nawj2wg9k7"; depends=[bcp changepoint chipPCR ecp fda_usc MBmca pbapply pracma qpcR robustbase shiny zoo]; }; PCS = derive2 { name="PCS"; version="1.2"; sha256="0488h6s1yz6fwiqf88z2vgckn6i0kwls8cazmpw3wspnaqvl2n4s"; depends=[multtest statmod]; }; @@ -2970,30 +3047,28 @@ in with self; { PDShiny = derive2 { name="PDShiny"; version="0.1.0"; sha256="0s09sywvy83dj06rkxzyi06wfymwnfpgf3lpgjbb8ps8q3byd4vs"; depends=[shiny]; }; PEGroupTesting = derive2 { name="PEGroupTesting"; version="1.0"; sha256="1z863ard0cc2g8ibxnmxhiqhvs53r6b8gpnavnfchm9432ifcbwi"; depends=[]; }; PEIP = derive2 { name="PEIP"; version="2.2-1"; sha256="0bzynmd7azs33994dlsabxp29lncs1v2njp6iy5l62rwrnxj9y0a"; depends=[bvls fields geigen Matrix pracma RSEIS]; }; - PELVIS = derive2 { name="PELVIS"; version="2.0.0"; sha256="0n5ndnwxsixx5lipsq33i8f7wc78sb9a4b9bbblb72v5nmmq305p"; depends=[DT MASS shiny]; }; + PELVIS = derive2 { name="PELVIS"; version="2.0.2"; sha256="07lb0vfi6szcbznd7ylqmk02l6w02b5v26i9vbwkvpy71nzvvfxd"; depends=[DT MASS shiny]; }; PEMM = derive2 { name="PEMM"; version="1.0"; sha256="18dd9hsbdrnhrrff7gpdqrw2jv44j8lg0v3lkcdpbd4pppcaq84h"; depends=[]; }; PGEE = derive2 { name="PGEE"; version="1.5"; sha256="1qcxbqnbpplnfjy83nm9fj9y4abzgbxnsggzx7ix3vb9qs18cdwh"; depends=[MASS mvtnorm]; }; PGM2 = derive2 { name="PGM2"; version="1.0-1"; sha256="03282pcq7gw47awc2mxjsbz6w3zpqjhqd7fzg8la4p00cd0vvmr4"; depends=[]; }; - PGRdup = derive2 { name="PGRdup"; version="0.2.3.5"; sha256="11lq2l0j6l3ixi3fmz2gd0idypl18gkhqfwbgg41gzzwj92lsrq4"; depends=[data_table ggplot2 gridExtra igraph stringdist stringi]; }; + PGRdup = derive2 { name="PGRdup"; version="0.2.3.6"; sha256="0bv3fzkylg70yhvyar1lbpwicli479ql1zfascjv60pic5ia1bc7"; depends=[data_table ggplot2 gridExtra igraph stringdist stringi]; }; PHENIX = derive2 { name="PHENIX"; version="1.3.1"; sha256="1gd9ycrwawi81al4f5v559km1112giwqnwvvk8ynj4kdb5bqpyq4"; depends=[ppcor SuppDists]; }; - PHEindicatormethods = derive2 { name="PHEindicatormethods"; version="1.3.1"; sha256="1q07jah44iajyrxqavxlgm752b46bjy5qcc6a36qjd6nbgx60ajh"; depends=[broom dplyr purrr rlang tibble tidyr]; }; + PHEindicatormethods = derive2 { name="PHEindicatormethods"; version="1.3.2"; sha256="193fc3l1zbbrnr4jl07bxv8jssyhpgh9aydi6f4w8mh56x9nazhk"; depends=[broom dplyr purrr rlang tibble tidyr]; }; PHInfiniteEstimates = derive2 { name="PHInfiniteEstimates"; version="1.3"; sha256="097a1wqh6c8y0ny6ikpkfqym4fw2vz7rrhqpf6xfb71vf3big90k"; depends=[coxphf lpSolve mlogit Rdpack survival]; }; PHYLOGR = derive2 { name="PHYLOGR"; version="1.0.11"; sha256="1fq2ny093b4881nwgj6wr8qd5g4dcxb51sdx40ndyxxpq6jj16n9"; depends=[]; }; PHeval = derive2 { name="PHeval"; version="0.5.4"; sha256="06fy5dm4mnp29f01163rw1d1hyl7rlcp4pfw18s87ckpr931qyma"; depends=[survival]; }; PIGShift = derive2 { name="PIGShift"; version="1.0.1"; sha256="115dnsh4b1rxx1d2kc8x3vl5366h5f0i6gg8l1w3v0f8309qigis"; depends=[ape mvtnorm]; }; - PINSPlus = derive2 { name="PINSPlus"; version="2.0.2"; sha256="0i7fl5ns8i9vdgdb10nqljxqfl2xsnmshvyibp141ashp78hxwna"; depends=[cluster doParallel entropy FNN foreach irlba matrixStats mclust Rcpp RcppArmadillo RcppParallel]; }; + PINSPlus = derive2 { name="PINSPlus"; version="2.0.5"; sha256="1j44ha8saszw0faxkp2887hhvba9i0m8pcq6bf76190924fq305g"; depends=[cluster doParallel entropy FNN foreach irlba matrixStats mclust Rcpp RcppArmadillo RcppParallel]; }; PIPS = derive2 { name="PIPS"; version="1.0.1"; sha256="1c5v3s6xys9p1q32k6mpsffhi9gwsq951rh12hs76dmak862yspc"; depends=[]; }; PK = derive2 { name="PK"; version="1.3-5"; sha256="1wzz2qv6h6nc2hcsg4098951i608xbbhc9f9ngamfigh5sbmzbh6"; depends=[]; }; PKI = derive2 { name="PKI"; version="0.1-7"; sha256="1y02s9g883b2i0ma5n4bz2ik06b9y7y75yhcdilmln2f9p9jyrr1"; depends=[base64enc]; }; - PKNCA = derive2 { name="PKNCA"; version="0.9.3"; sha256="0dbhzdbmcxvia21gn7mqmx7rinykyya2605nnrb7vbw1w6r1sjdv"; depends=[digest dplyr nlme rlang tidyr]; }; - PKPDmisc = derive2 { name="PKPDmisc"; version="2.1.2"; sha256="1cw0bfjwd1h1wbnb66271r1q0j205bdgpd4mdhn0nnigdjlxv549"; depends=[BH data_table dplyr ggplot2 lazyeval magrittr purrr Rcpp readr rlang stringr tibble]; }; + PKNCA = derive2 { name="PKNCA"; version="0.9.4"; sha256="01qipd6liy3fqx96v6hp288drgv6cqmhipbacyh18zi5pifv9hdp"; depends=[digest dplyr nlme rlang tidyr]; }; PKPDmodels = derive2 { name="PKPDmodels"; version="0.3.2"; sha256="1h893civ77ahbgjnc6kq3l7rszmqmx9dlxwavldigpq3r79vd86k"; depends=[]; }; PKconverter = derive2 { name="PKconverter"; version="1.5"; sha256="1zk2sjrjhq7n2k2p29r2qc6qdghr3riyjvvawz0g74lidg7hm1ly"; depends=[shiny shinydashboard shinythemes]; }; - PKgraph = derive2 { name="PKgraph"; version="1.7"; sha256="0g36cdv5cblqx69j48irxjc5nlw2cl3p714mlsblnd3362z1brwn"; depends=[cairoDevice ggplot2 gWidgetsRGtk2 lattice proto rggobi RGtk2]; }; PKreport = derive2 { name="PKreport"; version="1.5"; sha256="16hss9migbxpnw5f9gcw1nlvb81iyji00ylx5wd6kdwhz0ids9wj"; depends=[ggplot2 lattice]; }; PLIS = derive2 { name="PLIS"; version="1.1"; sha256="0b81s7677wglqvv1b5lx8k2iaks09kz0wrl07245a7j2pk9nxv7p"; depends=[]; }; PLMIX = derive2 { name="PLMIX"; version="2.1.1"; sha256="05mnzsi7y71cvg50qx8hp4m31gqslldl34k41r1f8npyb6ldpdca"; depends=[abind coda foreach ggmcmc ggplot2 gridExtra gtools label_switching MCMCpack PlackettLuce pmr prefmod radarchart rankdist rcdd Rcpp reshape2 StatRank]; }; - PLNmodels = derive2 { name="PLNmodels"; version="0.9.5"; sha256="0a80jjswdca3h1hkp39smavwbq47s0ydp04nb5jcj4yy4v1b9rx5"; depends=[corrplot dplyr ggplot2 glassoFast gridExtra igraph magrittr MASS Matrix nloptr R6 Rcpp RcppArmadillo tidyr]; }; + PLNmodels = derive2 { name="PLNmodels"; version="0.10.6"; sha256="1rjryyw9zydcqaak72xv8x0gjybl7aan1n52jxj9m5672sw3knwr"; depends=[corrplot dplyr ggplot2 glassoFast gridExtra igraph magrittr MASS Matrix nloptr R6 Rcpp RcppArmadillo tidyr]; }; PLRModels = derive2 { name="PLRModels"; version="1.1"; sha256="0dwnzfw7a1cxz9s00kxf19jmjsc8cy6cc9q2mjqf8z7690wrg7hb"; depends=[]; }; PLSbiplot1 = derive2 { name="PLSbiplot1"; version="0.1"; sha256="1l8d1k913ic0qwxvrrd447p5ni3mzc6v9lv45b7vqrpzkxdci6gy"; depends=[]; }; PLmixed = derive2 { name="PLmixed"; version="0.1.4"; sha256="1plkcv7k6jijywhxrsx2lxcbavzvagzl8wnz132nqq619wvb57ia"; depends=[lme4 Matrix numDeriv optimx]; }; @@ -3004,8 +3079,9 @@ in with self; { PML = derive2 { name="PML"; version="1.2"; sha256="0r4mfnkbg7chrnm3lb78hjcz25fal6vvvqwvnzvicl46mdhl94yb"; depends=[dplyr rbokeh tibble tidyr]; }; PMwR = derive2 { name="PMwR"; version="0.14-0"; sha256="15qfpsnnak8qf41cfq3n4g6iwxnzbifxqm50pnbk76v6727s21hy"; depends=[datetimeutils fastmatch NMOF orgutils textutils zoo]; }; PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.6.0"; sha256="1xwjw8wcr0xys3bwk7aj0rih2nzdw86rja7fwqis2rfcbk9r8cim"; depends=[dplyr magrittr RCurl readr readxl survey tibble timeDate]; }; + PNWColors = derive2 { name="PNWColors"; version="0.1.0"; sha256="1phplnclkficfv8s6wsyrckk4ixzbayiy5iix6dddg40485l9nyj"; depends=[]; }; POCRE = derive2 { name="POCRE"; version="0.5.0"; sha256="0aph1lmb0xkzm4l4ah2wrx13d138igf4k4w9wb9lca4vv6m7xzqf"; depends=[EbayesThresh ggplot2 pracma]; }; - POD = derive2 { name="POD"; version="1.1.4"; sha256="0ivq7jpnyb5zvvi2dx788cawrsh26hyp8j0a8mkfcsnhyhhs7hnb"; depends=[]; }; + POD = derive2 { name="POD"; version="1.2.0"; sha256="1xg2xzfmzg2qrwd02xy4fwsfmccigw6lm5266z6w1kxzb7p7bbw0"; depends=[]; }; POET = derive2 { name="POET"; version="2.0"; sha256="0w3jhj45sxisyrpcsazbrbcsz7rmraw71jjm0zixbcgc4klb98ar"; depends=[]; }; POINT = derive2 { name="POINT"; version="1.1"; sha256="0bkrsvcmm7927d7c56wr804a2wv5c1dn8y8zhf76433ckj45068x"; depends=[CompQuadForm Matrix rARPACK]; }; POMaSPU = derive2 { name="POMaSPU"; version="1.0.0"; sha256="0jz3jgzdykv0xvfw3ix0hbs32as6dp7p5v8bj5nddknx10d0siya"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; @@ -3021,9 +3097,10 @@ in with self; { PPforest = derive2 { name="PPforest"; version="0.1.1"; sha256="0iplbw5b2vhqbp6gc123ykzmilwa80akljkv3jzfmi90ckm4k08m"; depends=[doParallel dplyr magrittr plyr Rcpp RcppArmadillo tidyr]; }; PPtree = derive2 { name="PPtree"; version="2.3.0"; sha256="002qjdx52r2h90wzrf2r3kz8fv3nwx08qbp909whn6r4pbdl532v"; depends=[MASS penalizedLDA]; }; PPtreeViz = derive2 { name="PPtreeViz"; version="2.0.4"; sha256="008hlgi56p9wydpsb2f1dxi4slml7p417c34lw00hivbl53d6x97"; depends=[ggplot2 gridExtra partykit Rcpp RcppArmadillo]; }; + PQLseq = derive2 { name="PQLseq"; version="1.2"; sha256="0md6s7yb24zq74b12ackhh1yggyfsg3226acwfaf1pb3l4yvway4"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; }; PREPShiny = derive2 { name="PREPShiny"; version="0.1.0"; sha256="0zsg07y6nhp2lma3pdz8xd981y3mh8k21il5jv0inma1d1xr4g3f"; depends=[dplyr psycho rmarkdown shiny]; }; PRIMAL = derive2 { name="PRIMAL"; version="1.0.2"; sha256="04fn0c10v9ai7vrrd4qr84rid3x42wq749rn5p1i6nkvmjv3dnhs"; depends=[Matrix Rcpp RcppEigen]; }; - PRIMME = derive2 { name="PRIMME"; version="3.0-0"; sha256="1wvwdsaqg5rqx93svvhjvi64x6vxbr0a8za0a7cixy0vdg14vli4"; depends=[Matrix Rcpp]; }; + PRIMME = derive2 { name="PRIMME"; version="3.1-1"; sha256="1gwdix0qbnap3figh6lskqy3d5hzb4hqi97hbqhp3sz1vnkgm4bz"; depends=[Matrix Rcpp]; }; PRIMsrc = derive2 { name="PRIMsrc"; version="0.8.2"; sha256="04g1saf511xs26m1iv9xfsmfs15fdfaxh5qlbay2mcb198270pd8"; depends=[glmnet Hmisc quantreg superpc survival]; }; PRISM_forecast = derive2 { name="PRISM.forecast"; version="0.2.0"; sha256="1r2fjnd5wjlb0y5x9pnh80dmkdfdr9yhqckynkc92ngc7dr1f44z"; depends=[glmnet xts zoo]; }; PRISMA = derive2 { name="PRISMA"; version="0.2-7"; sha256="0sk2d07m8rhipa0kdbaf8ngryda6f1ihp5akpnyw2llajf0x8as5"; depends=[ggplot2 gplots Matrix]; }; @@ -3031,12 +3108,14 @@ in with self; { PROBShiny = derive2 { name="PROBShiny"; version="0.1.0"; sha256="17p6pb8nwq36ha697f2lf8nwzj5cylmh8rdzyag49ks5hi9painb"; depends=[epitools LaplacesDemon rmarkdown rpivotTable shiny shinyMatrix]; }; PROJ = derive2 { name="PROJ"; version="0.1.6"; sha256="0h0iky99wqb4cz7imrwz2p3w71s8n21vfdjwi30w240vim6d3lgg"; depends=[]; }; PROMETHEE = derive2 { name="PROMETHEE"; version="1.1"; sha256="0r53mb9ndwm4yli3h50cfamsjzpq6b67g72mszm7lpbqpj58wqw6"; depends=[lpSolve]; }; - PROSPER = derive2 { name="PROSPER"; version="0.3.2"; sha256="1w58sv519fjrmbv5q7pvfd4b3d22v33nlx9m232dkxj6i7qs1dcx"; depends=[data_table]; }; + PROSPER = derive2 { name="PROSPER"; version="0.3.3"; sha256="1wdrdqii7d4yfky6706n9xjmabnz99jjja1c80nbj3fp8idsbli5"; depends=[data_table]; }; PROTOLIDAR = derive2 { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; }; + PROreg = derive2 { name="PROreg"; version="1.1"; sha256="0jws41hgrpcih5ispp6f627f81sjbdygzgjbw4gawf31n5z8pi5a"; depends=[car fmsb Matrix matrixcalc numDeriv RColorBrewer rootSolve]; }; PROscorer = derive2 { name="PROscorer"; version="0.0.1"; sha256="0mgj0mi0vzdk0agimsx4k9i4bss0j5lqiayzhldr1hrqrx2a4f3d"; depends=[PROscorerTools]; }; PROscorerTools = derive2 { name="PROscorerTools"; version="0.0.1"; sha256="1vliffkfqdn5l96bncfgayv19i20kmawlxi8q853wamj6npdpv5r"; depends=[]; }; + PROsetta = derive2 { name="PROsetta"; version="0.1.4"; sha256="06lpwkcnx71lfawlv20d83y5i7iqskipg8d3wvdc99k4cirdypjy"; depends=[equate lavaan mirt plink psych]; }; PRROC = derive2 { name="PRROC"; version="1.3.1"; sha256="1m28h8pcd78049lz2qixhkcr9h5b3jik3maqzfbvq9y58z71i4a7"; depends=[]; }; - PRSim = derive2 { name="PRSim"; version="1.2-1"; sha256="1d56yz51848dqn1936iy63bcjvl0kb0k04pdy0j5zynrghw0jkqx"; depends=[goftest homtest wmtsa]; }; + PRSim = derive2 { name="PRSim"; version="1.2-2"; sha256="0amvri7s32zrzc7a6lldwhpfsi0z92k3ps0rzlgys57dhpzl0mfs"; depends=[goftest homtest splus2R wavScalogram]; }; PReMiuM = derive2 { name="PReMiuM"; version="3.2.3"; sha256="1znr1swz73n1ws657dvv56y6crmqicfllbz460vaw8a0dnjiqsc9"; depends=[ald BH cluster data_table gamlss_dist ggplot2 plotrix Rcpp RcppEigen rgdal spdep]; }; PResiduals = derive2 { name="PResiduals"; version="0.2-6"; sha256="11r0zn626s701hprjy634a7d3v3sq6lmlzpamv02609fg8wjhy9h"; depends=[Formula MASS rms SparseM]; }; PSAgraphics = derive2 { name="PSAgraphics"; version="2.1.1"; sha256="05c0k94dxddyrhsnhnd4jcv6fxbbv9vdkss2hvlf3m3xc6jbwvh9"; depends=[rpart]; }; @@ -3045,11 +3124,13 @@ in with self; { PSIMEX = derive2 { name="PSIMEX"; version="1.1"; sha256="0cndzasvg4y49incyd9nfz8y3z88ywbc7xk0zzjir665pv2xn23b"; depends=[knitr MCMCglmm pedigree plotrix]; }; PSLM2015 = derive2 { name="PSLM2015"; version="0.2.0"; sha256="1f8kzlqil2ac8a9fbj9fhdni2narh2yaaz044mlx7gsv2ns3ai19"; depends=[dplyr ggplot2 magrittr]; }; PSPManalysis = derive2 { name="PSPManalysis"; version="0.2.2"; sha256="0g59r13nc6w4a4gkjxnvkygp9hax1sw34a5rv6r170gwdj9fiswq"; depends=[pkgbuild]; }; + PSSMCOOL = derive2 { name="PSSMCOOL"; version="0.2.0"; sha256="1y2y3ajxph5w67gww0yycy766r8yhgiz70228b89yiiildniryps"; depends=[dtt gtools infotheo phonTools]; }; PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; }; PSW = derive2 { name="PSW"; version="1.1-3"; sha256="0ahm7rp795d7j88n15b3q0gl573p3g0krc7jd1zv87g4bsdc9b5x"; depends=[gtools Hmisc]; }; + PSweight = derive2 { name="PSweight"; version="0.1.1"; sha256="17lbmpl68vwsx3240rvj787j30x47sbmhvwp8lfv29kfnlqvyiv9"; depends=[ggplot2 MASS nnet numDeriv]; }; PTAk = derive2 { name="PTAk"; version="1.3-34"; sha256="0ylnag492v1n0pmzsz73w12frhv8c3r3dxgarf58ny0ir0i0ywvl"; depends=[tensor]; }; PTE = derive2 { name="PTE"; version="1.7"; sha256="1azkrij4kfmvp03lnzm88gwgvz8g54jq94j0qg8ynxvyjzrppc98"; depends=[doParallel foreach survival]; }; - PTXQC = derive2 { name="PTXQC"; version="1.0.4"; sha256="1yywzmnnj3i53hkphjml78hrz5fk0k3nmkp9hzrsja79dpimwn40"; depends=[data_table ggdendro ggplot2 gtable kableExtra knitr plyr RColorBrewer reshape2 rmarkdown seqinr UpSetR yaml]; }; + PTXQC = derive2 { name="PTXQC"; version="1.0.5"; sha256="0g70fz6ssgz8k0yy33j6135qnf6mbg1ipn6lli27yshzdzwl6yhz"; depends=[data_table ggdendro ggplot2 gtable kableExtra knitr plyr RColorBrewer reshape2 rmarkdown seqinr UpSetR yaml]; }; PTwins = derive2 { name="PTwins"; version="0.1.1"; sha256="166mc7w52n9d3n72h5jvvhbki87prkils3yigdf57dn9pyixrd66"; depends=[]; }; PUPAIM = derive2 { name="PUPAIM"; version="0.2.0"; sha256="1ky6f4yhm3hjrfxwk8vfalzzjgkq1922my26w457q8nfng7f2m53"; depends=[Metrics minpack_lm nls2]; }; PUlasso = derive2 { name="PUlasso"; version="3.2.3"; sha256="07jf81q898833qswwairkv21dxlz7890219fdgnw3ywgp5kvlp41"; depends=[doParallel foreach ggplot2 Matrix Rcpp RcppEigen]; }; @@ -3057,9 +3138,9 @@ in with self; { PVR = derive2 { name="PVR"; version="0.3"; sha256="0pcnazkiwmicr3k6k70r8skqk0pd46fcqhhxghawxjs4slgnygkj"; depends=[ape MASS splancs]; }; PWD = derive2 { name="PWD"; version="1.0"; sha256="0ksr3biaqd4p5a4lv28i4cwk1fn9822ndq2161mgvc1c344p06fj"; depends=[Rcpp RcppArmadillo]; }; PWEALL = derive2 { name="PWEALL"; version="1.3.0"; sha256="0nb0v6wvj9ay90qcbrr9drg2g84fb7a9m78pzb69wp8789i8ixhk"; depends=[survival]; }; - PWFSLSmoke = derive2 { name="PWFSLSmoke"; version="1.2.100"; sha256="0fqzr5gng5miyslkxjkq0gmy1mi37bcjg8pb9vhs7dxa15dm332j"; depends=[cluster curl dplyr dygraphs geosphere ggmap glue httr jsonlite leaflet lubridate magrittr mapproj maps maptools MazamaCoreUtils MazamaSpatialUtils openair png purrr raster RColorBrewer readr reshape2 rgdal RgoogleMaps rlang sf slippymath sp stringr tibble tidyr xts]; }; + PWFSLSmoke = derive2 { name="PWFSLSmoke"; version="1.2.111"; sha256="0gry7nq8gqxfspihsc05pcwn25fciw41hjy9bnd1bsqqk5f520d0"; depends=[cluster curl dplyr dygraphs geosphere ggmap glue httr jsonlite leaflet lubridate magrittr mapproj maps maptools MazamaCoreUtils MazamaSpatialUtils openair png purrr raster RColorBrewer readr reshape2 rgdal RgoogleMaps rlang sf slippymath sp stringr tibble tidyr xts]; }; PabonLasso = derive2 { name="PabonLasso"; version="1.0"; sha256="158xg9i13nqy1bnpch8r6a7yas01hsdidmcypgccmyh7d7l52mr1"; depends=[]; }; - Pade = derive2 { name="Pade"; version="1.0.0"; sha256="1z04fsm8mhlly5dmz6hxq0dqhh6fyk0wi6zf8vmfzxp9mw0zvmmy"; depends=[]; }; + Pade = derive2 { name="Pade"; version="1.0.1"; sha256="11i8cjmqkly78is9rhnd1ipjb8awmwlscv2kvdf75qc71yigvlgz"; depends=[]; }; PairViz = derive2 { name="PairViz"; version="1.3.3"; sha256="0zhj4b33dahsyyw0jlnwn2swz2qislgphy8xn9lxdifb6iq7arbr"; depends=[graph gtools TSP]; }; PairedData = derive2 { name="PairedData"; version="1.1.1"; sha256="07y5fd4fkwfp0lbacf41ya8cn7x4n1haxl0cln9iibjffc1mbr5q"; depends=[ggplot2 gld lattice MASS mvtnorm]; }; PairwiseD = derive2 { name="PairwiseD"; version="0.9.62"; sha256="19qjms99gf7s39nwwgj56n8426d0gw80dipz165sk3km4zb2mcwv"; depends=[openxlsx xlsx]; }; @@ -3081,11 +3162,11 @@ in with self; { Paneldata = derive2 { name="Paneldata"; version="1.0"; sha256="00hk340x5d4mnpl3k0hy1nypgj55as2j7y2pgzfk3fpn3zls5zib"; depends=[]; }; ParBayesianOptimization = derive2 { name="ParBayesianOptimization"; version="1.1.0"; sha256="1famkdri08qsamn5ji4knq42pj8z4lkhacbr8mbj439hkmpsfxkv"; depends=[crayon data_table dbscan DiceKriging foreach ggplot2 ggpubr lhs plotly]; }; ParDNAcopy = derive2 { name="ParDNAcopy"; version="2.0"; sha256="017xwznhfibi8kp0ifww02c0qcq0vxs06rjww4kcp2bvdmld8kc4"; depends=[DNAcopy]; }; - ParallelLogger = derive2 { name="ParallelLogger"; version="1.2.0"; sha256="1xc5lgyly7mmi8hw9kzm4yj09z1ngzqkgki7zjgfcrwvfz1lnknr"; depends=[jsonlite snow XML]; }; + ParallelLogger = derive2 { name="ParallelLogger"; version="2.0.0"; sha256="1hja8flwhkgqj9g7mflvfxdkzx2l8ll5scj06kmib3pihm6s21ag"; depends=[jsonlite snow XML]; }; ParallelPC = derive2 { name="ParallelPC"; version="1.2"; sha256="07y7xb16865khxkvwsk1yglzyy7ja4aj2wpkipaz48i77c3x8bi2"; depends=[]; }; ParallelTree = derive2 { name="ParallelTree"; version="0.1.3"; sha256="1h53qwhc63fglm452b3by7f3g6f3hyqwkmwmbdqdb9rv3j4gvnvg"; depends=[ggplot2]; }; ParamHelpers = derive2 { name="ParamHelpers"; version="1.14"; sha256="1sx2ddm8hwvvmk0z65wa689w80py3fny82zjd4d29qwxlv854xmi"; depends=[backports BBmisc checkmate fastmatch]; }; - Pareto = derive2 { name="Pareto"; version="1.1.5"; sha256="1w435yywdbsl8s5qrhxcai89s0qax31rx4faxydkqqhk47d5756r"; depends=[]; }; + Pareto = derive2 { name="Pareto"; version="2.2.0"; sha256="0yzqwgl669k461xrwadi8py5krc1kmrqqzygf5yg8q1359r4c2pv"; depends=[]; }; ParetoPosStable = derive2 { name="ParetoPosStable"; version="1.1"; sha256="1fwji5wrhbxr089dll812csamvb5q2pxn1607rpirarifgfbj28m"; depends=[ADGofTest doParallel foreach lmom]; }; PartCensReg = derive2 { name="PartCensReg"; version="1.39"; sha256="0blzv57cbxqghkz4fc3plvrcw80g0kx17dzmajkfv598m1wm6hc8"; depends=[Matrix optimx ssym]; }; Partiallyoverlapping = derive2 { name="Partiallyoverlapping"; version="2.0"; sha256="0pb0digyigqyzb0zqikgz002kqf1xprcjhxr62a7iqbzy1yycayf"; depends=[]; }; @@ -3096,7 +3177,7 @@ in with self; { Peacock_test = derive2 { name="Peacock.test"; version="1.0"; sha256="0ypvwywipyh8lm8xkazsfjgjpvvyi2g8kid63qff11372p33m6xs"; depends=[]; }; PeakError = derive2 { name="PeakError"; version="2017.06.19"; sha256="1d4v7s478zjz42dm6ps4nnqqyyqv84dgmzn1bp1a4qwnfv9vmfg7"; depends=[]; }; PeakSegDP = derive2 { name="PeakSegDP"; version="2017.08.15"; sha256="1ndf4d4ikcyqi0k51kil2jw777z4c1m4pda3dahrjmjyz0jhrhkw"; depends=[]; }; - PeakSegDisk = derive2 { name="PeakSegDisk"; version="2019.9.27"; sha256="02qiqj989a9fihngvi74rbi970ifbn3kx0k419vdlhvlzwdny3i5"; depends=[data_table]; }; + PeakSegDisk = derive2 { name="PeakSegDisk"; version="2020.8.13"; sha256="11nw8x0fr6474yvcf3fhyjql91vknmdsdvx1q1dwblyqd10f120h"; depends=[data_table]; }; PeakSegJoint = derive2 { name="PeakSegJoint"; version="2018.10.3"; sha256="0f0dw6swhhf301j4ci3rs8cmzd39dcjlb0kqxpdh7f00gp3qn7da"; depends=[PeakError penaltyLearning]; }; PeakSegOptimal = derive2 { name="PeakSegOptimal"; version="2018.05.25"; sha256="0j39jzy4r0h787vs3klgbpcmb096ds3hzhvv5w3xs53kl0qkypj4"; depends=[penaltyLearning]; }; PearsonDS = derive2 { name="PearsonDS"; version="1.1"; sha256="0rqh9ji0bah3n1c6fcg7krgqs65qla9p3xrnc4jr7va6ph104im9"; depends=[]; }; @@ -3106,10 +3187,10 @@ in with self; { PenCoxFrail = derive2 { name="PenCoxFrail"; version="1.0.1"; sha256="0snjf8jxzyf30xj3wx9p6g073dqw592l1j1c6yxfg8y4kgzhzwq7"; depends=[Matrix Rcpp RcppArmadillo survival]; }; PenIC = derive2 { name="PenIC"; version="1.0.0"; sha256="0vcqawmbm8z6lkcxfq1b2png9viz5q669npbv0s7dn6smwhanlzz"; depends=[MASS Matrix numDeriv]; }; PepSAVIms = derive2 { name="PepSAVIms"; version="0.9.1"; sha256="0m4jrq6wcjy0k80gvrnm9f7kvi1ifx9182xfq0psyaxpj0ggvzij"; depends=[elasticnet]; }; - Peptides = derive2 { name="Peptides"; version="2.4.1"; sha256="05xhimjw7kdga07ycgwz6mq5ppcx04zy00mx5fvavp314zrqxnsv"; depends=[Rcpp]; }; + Peptides = derive2 { name="Peptides"; version="2.4.2"; sha256="150hxr2qpmp0ad32mkvnr9pagxq38g4c83khbdv8h34bj97nharf"; depends=[Rcpp]; }; PerFit = derive2 { name="PerFit"; version="1.4.3"; sha256="0qmh78wrx3vzz41z30db3bb62n325blphjhpzdzykfx77gr8plyr"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; }; PerMallows = derive2 { name="PerMallows"; version="1.13"; sha256="0ny2vc8f0npixaw1kp2d93xr4g46nsg8jjwvi6afv9xjvaz0i6wy"; depends=[Rcpp]; }; - Perc = derive2 { name="Perc"; version="0.1.4"; sha256="0i3b7glnrv6vpc4zxkalh0ad0rf26dl2zwcgl86pz80qmzll8m9r"; depends=[]; }; + Perc = derive2 { name="Perc"; version="0.1.5"; sha256="1097cdx69jliwk1d5yv6v0igmqk4dwgypcb4k9dnqla19rbxx8xc"; depends=[]; }; PerfMeas = derive2 { name="PerfMeas"; version="1.2.1"; sha256="1x7ancmb41zd1js24rx94plgbssyc71z2bvpic6mg34xjkwdjw93"; depends=[graph limma RBGL]; }; PerformanceAnalytics = derive2 { name="PerformanceAnalytics"; version="2.0.4"; sha256="0ci26hsj4wnw9g0mh4vrn0cg986cpcpx169rvw6v6rbnjxq718bq"; depends=[quadprog xts zoo]; }; PeriodicTable = derive2 { name="PeriodicTable"; version="0.1.2"; sha256="133rwbvapk99dmh3vi8p7sa81d7hjmy0g4a5hcmwr3mdq8jzgwrj"; depends=[]; }; @@ -3117,11 +3198,12 @@ in with self; { PerseusR = derive2 { name="PerseusR"; version="0.3.4"; sha256="1k03flbnjndx5mm26hysk64z89858m50kjs8gyldm4s5f09iny6p"; depends=[Biobase plyr stringr XML]; }; PersianStemmer = derive2 { name="PersianStemmer"; version="1.0"; sha256="1dpfkafijg7g7hzka93l1ymq5rcnjsfgvkvbpdx3vjnid05kh4v1"; depends=[]; }; PersomicsArray = derive2 { name="PersomicsArray"; version="1.0"; sha256="1d5gxd65b01m13rgbdhk6w3l43vqcbdk0s1pbgc8h6cnipj55z0i"; depends=[jpeg raster stringr tiff]; }; - PetfindeR = derive2 { name="PetfindeR"; version="2.0.0"; sha256="0bflibfm1fiv18pd4wp1b6ipf5ybr9mra2r968mhmm9yy4119msy"; depends=[httr jsonlite R6]; }; + PetfindeR = derive2 { name="PetfindeR"; version="2.1.0"; sha256="1pb3mqv4pxl971j210m7vwhz9qqbhb7l5fpmb1vjwkc5hx11zh9l"; depends=[R6]; }; PhViD = derive2 { name="PhViD"; version="1.0.8"; sha256="038pw24sb8ja8pbbmj05rww6413i2ljybb2dxwgrpffv22aqawmc"; depends=[LBE MCMCpack]; }; PharmPow = derive2 { name="PharmPow"; version="1.0"; sha256="0gabkd8p4zsig9p697lyk8m2jxb5abjk81rpzd5ih1yk1qanhsn5"; depends=[scatterplot3d]; }; Phase123 = derive2 { name="Phase123"; version="2.1"; sha256="0bz867wsnrflzlzrql1vgacymx70rb9wik9jw3g34i2vigpl8x8i"; depends=[Rcpp RcppArmadillo survival]; }; - Phase12Compare = derive2 { name="Phase12Compare"; version="1.3"; sha256="1zrll0nx2z45sa5yzan4b59pqw9wgfqxpqv7njkpwim19c0damkl"; depends=[mvtnorm Rcpp RcppArmadillo]; }; + Phase12Compare = derive2 { name="Phase12Compare"; version="1.5"; sha256="0n9rjgdllpnj451a8d4p8x3mjf23czcmk7cn1c9v3l7mg4jn18h2"; depends=[mvtnorm Rcpp RcppArmadillo]; }; + Phenotype = derive2 { name="Phenotype"; version="0.1.0"; sha256="0bfg2vk35hrfzmpjpnv3yhnsfr17505c49msbppqrrbpw5wgawy5"; depends=[lme4 tidyr]; }; PhenotypeSimulator = derive2 { name="PhenotypeSimulator"; version="0.3.3"; sha256="1micildhgqx4h52927p68g6jvw2rif6maf90d3dzvn76ll2zbpwh"; depends=[cowplot data_table dplyr ggplot2 mvtnorm optparse R_utils Rcpp reshape2 snpStats zoo]; }; Phxnlme = derive2 { name="Phxnlme"; version="1.0.0"; sha256="0h9mi8p95rp1s8xsdv38j9fpy2cy9zvjnldjmnj0n469kimp2782"; depends=[ggplot2 gridExtra lattice manipulate testthat]; }; PhyInformR = derive2 { name="PhyInformR"; version="1.0"; sha256="10d720ww909b1xmdrms554pnn0757nzppnrniar4n157mh0qw7ms"; depends=[ape doParallel foreach geiger ggplot2 gplots gridExtra hexbin iterators PBSmodelling phytools RColorBrewer]; }; @@ -3134,7 +3216,7 @@ in with self; { Pijavski = derive2 { name="Pijavski"; version="1.0"; sha256="1027lmmk17br9zxah980j6l3k2p92065bwigw6gpy9g0g5jjl4f1"; depends=[Rcpp]; }; PivotalR = derive2 { name="PivotalR"; version="0.1.18.3.1"; sha256="1npfi5bdn0f4arp3wpi5ai21ad5fxx3lm7n5wjhvzvcyr6gl38as"; depends=[Matrix]; }; PlackettLuce = derive2 { name="PlackettLuce"; version="0.2-9"; sha256="1sv37wvvp44iwv4bpjhp3mnpyk77c60vi0xwrapzywszi222ynbl"; depends=[igraph Matrix partykit psychotools psychotree qvcalc RSpectra sandwich]; }; - PlaneGeometry = derive2 { name="PlaneGeometry"; version="1.1.0"; sha256="1yr0h2rasx0f7lp3vc30cmryfrsskbqdd1mdd5wv3w794y9fizs5"; depends=[gsl R6 sdpt3r stringr uniformly]; }; + PlaneGeometry = derive2 { name="PlaneGeometry"; version="1.2.0"; sha256="19ynvclgj2148gphqq825byj6xdvjr5i15h448505gv4j1viw0cx"; depends=[gsl R6 sdpt3r stringr uniformly]; }; Planesmuestra = derive2 { name="Planesmuestra"; version="0.1"; sha256="0v7l4hrfckcf7zmk0ihq2ij0qli7x12j17vd6752d1yjk27fgk57"; depends=[]; }; PlasmaMutationDetector = derive2 { name="PlasmaMutationDetector"; version="1.7.2"; sha256="0qra7q2pzw212qylyrfhv6zjcsldfw84b93cari0qjqnw4gyfph2"; depends=[GenomicRanges ggplot2 robustbase Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; Plasmidprofiler = derive2 { name="Plasmidprofiler"; version="0.1.6"; sha256="10m3knmz0596rm30ncyfprar6l42bjm7r34n4pjz1biqmiz6yz6k"; depends=[ape dplyr gdata ggdendro ggplot2 gridExtra gtable htmlwidgets magrittr plotly plyr RColorBrewer reshape2 stringr]; }; @@ -3148,13 +3230,13 @@ in with self; { PogromcyDanych = derive2 { name="PogromcyDanych"; version="1.5"; sha256="1m6sycca44h8kdf9cd67annw6dxxwiscidzfnjrzqmqa4v6n7rsg"; depends=[dplyr SmarterPoland]; }; PoiClaClu = derive2 { name="PoiClaClu"; version="1.0.2.1"; sha256="1q89b0nypz2iivmgwg1nb1l7p285wy00s40j3qp8zc78ra1rjhyx"; depends=[]; }; PointFore = derive2 { name="PointFore"; version="0.2.0"; sha256="0ml6xcdl4ygr01q0cjwd11ql7wal91jnf3hs1rfhfr4mh8jpgivx"; depends=[boot car ggplot2 gmm lubridate MASS sandwich]; }; - PoisBinNonNor = derive2 { name="PoisBinNonNor"; version="1.3.1"; sha256="1pgaf3yamigcw32sczj4f1dpndwyrxirrfl4jv0vp5j1jd2zhb18"; depends=[BB corpcor Matrix mvtnorm]; }; - PoisBinOrd = derive2 { name="PoisBinOrd"; version="1.4.1"; sha256="0bzgb88mg95h6liwnmflpssmz9n5xnwmipnqca611l1kp3rld0nk"; depends=[corpcor GenOrd Matrix mvtnorm]; }; + PoisBinNonNor = derive2 { name="PoisBinNonNor"; version="1.3.2"; sha256="00j5k3kbh8rj9d0jgibi1zl77b257si8l3v2m2nrfyfwssfcrdlp"; depends=[BB corpcor Matrix mvtnorm]; }; + PoisBinOrd = derive2 { name="PoisBinOrd"; version="1.4.2"; sha256="0skgh9x675v921irgvwjc07b9fd0yzjwhj9z4vvzvkj4jk4gx22f"; depends=[corpcor GenOrd Matrix mvtnorm]; }; PoisBinOrdNonNor = derive2 { name="PoisBinOrdNonNor"; version="1.5.2"; sha256="0a6ks20f9vnf8w8n0007yrqaa9vpgqq43vxa88dhvdpn6bbw5w0s"; depends=[BB corpcor GenOrd MASS Matrix]; }; - PoisBinOrdNor = derive2 { name="PoisBinOrdNor"; version="1.6.1"; sha256="12mchs62xq5jrq7y66l53yvwgm8iisa16120jmja0xdcr9sgcr84"; depends=[corpcor GenOrd Matrix mvtnorm psych]; }; - PoisNonNor = derive2 { name="PoisNonNor"; version="1.6.1"; sha256="0pk1hqydpd6f8419kn986kf55gc3hyycfjyj1nvqsml7ic56ic98"; depends=[BB corpcor MASS Matrix]; }; - PoisNor = derive2 { name="PoisNor"; version="1.3.1"; sha256="1s1z6bpxaa1ibdgv6bd5phccswd9bh26abwcywlnb55xl5vrgknv"; depends=[corpcor Matrix mvtnorm]; }; - PoissonBinomial = derive2 { name="PoissonBinomial"; version="1.1.0"; sha256="0khsp1jvm0b1nwrfas6d1qagf6m7m44k3yv9ghlknxlvkg79dyy5"; depends=[BH Rcpp]; }; + PoisBinOrdNor = derive2 { name="PoisBinOrdNor"; version="1.6.2"; sha256="19ilr0fczr7candrmj372hhc6sai863qwcmnpimqgpfac7393qr5"; depends=[corpcor GenOrd Matrix mvtnorm psych]; }; + PoisNonNor = derive2 { name="PoisNonNor"; version="1.6.2"; sha256="1bf0qzgclw7993dc7x1sf3hfzgfv0jlga8ykvaif455d6nkiyy0k"; depends=[BB corpcor MASS Matrix]; }; + PoisNor = derive2 { name="PoisNor"; version="1.3.2"; sha256="1kpac3fz3cq4vi5maij0gbiwqm9qlvjwawvn2qz3sp5f2wn71w90"; depends=[corpcor Matrix mvtnorm]; }; + PoissonBinomial = derive2 { name="PoissonBinomial"; version="1.1.1"; sha256="0zz8zxd1gl95fd3izwc1hwwbrd6zkxcspzdskqfwb61zp1z6q0zp"; depends=[BH Rcpp]; }; PoissonPCA = derive2 { name="PoissonPCA"; version="1.0.2"; sha256="0rb30l0x8knwvh8li62cfxms9b20db77g4r8cwgwasb9jjljxv3s"; depends=[]; }; PoissonSeq = derive2 { name="PoissonSeq"; version="1.1.2"; sha256="1hhx0gv06cp6hm6h36mqy411qn9x15y45crpzbyf8crfs85c6gbg"; depends=[combinat]; }; PolyPatEx = derive2 { name="PolyPatEx"; version="0.9.2"; sha256="1z1hwvsw7b6cz5xfy35a5ldrzb3fhp3swiyz56v1zqblpsaz8n9g"; depends=[gtools]; }; @@ -3163,12 +3245,14 @@ in with self; { PolynomF = derive2 { name="PolynomF"; version="2.0-3"; sha256="067l71i2zjv6gvd0br2m034ls3r5lcmc0amml1qbj4wchd7mqlw9"; depends=[Rcpp]; }; Pomic = derive2 { name="Pomic"; version="1.0.4"; sha256="0xy5fgimbgqqac3n7akhwyvnrvd9fpvx9h8nk4spxrxc8x0km1w7"; depends=[]; }; PooledMeanGroup = derive2 { name="PooledMeanGroup"; version="1.0"; sha256="0i9s7qskjnji3mf6clsi69rnni57v8cysgr9gh3hvxjzlf1sq8y7"; depends=[]; }; - PopED = derive2 { name="PopED"; version="0.4.0"; sha256="1cj6nj5w4ckvnldpc7g4mxdps619zlhzsdibd9ih8i2lxh1xbrfz"; depends=[boot codetools dplyr ggplot2 magrittr MASS mvtnorm purrr stringr tibble tidyr]; }; + PopED = derive2 { name="PopED"; version="0.5.0"; sha256="1yzldm4mvg4i9xhx1wrb7wbmp15fqsa68grnjj29ig11gbivyfab"; depends=[boot codetools dplyr ggplot2 gtools magrittr MASS mvtnorm purrr stringr tibble]; }; PopGenKit = derive2 { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; }; PopGenReport = derive2 { name="PopGenReport"; version="3.0.4"; sha256="0x9j9f9k65rfr4fxyrxqa9220psfh1bicls6vwbxmqsfdsfnvs0j"; depends=[ade4 adegenet calibrate data_table dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; }; PopGenome = derive2 { name="PopGenome"; version="2.7.5"; sha256="0xdwgih1n7bkykbzrnp293yzrlj80vr2v6rlsww61nxlhynbh9yn"; depends=[ff]; }; PopVar = derive2 { name="PopVar"; version="1.2.1"; sha256="09az5wa0zai6axhvrljqdjn74nb7jikqwjqy8f570qxb6jbgfgay"; depends=[BGLR qtl rrBLUP]; }; PortRisk = derive2 { name="PortRisk"; version="1.1.0"; sha256="05yxqcv0cijy3s9zx68f9xy59jv55kmj3v0pz5pgl17j23kb9rlc"; depends=[copula MASS MCMCpack tseries zoo]; }; + PortalHacienda = derive2 { name="PortalHacienda"; version="0.1.4"; sha256="1mm9939inmrr77irmw30620zff6jf86zw5nf65k5j4i5nawzsx15"; depends=[curl dplyr forecast httr lubridate magrittr readr tibble timetk xts zoo]; }; + PortfolioAnalysis = derive2 { name="PortfolioAnalysis"; version="1.0.6"; sha256="1chmh1r3hphl4wxy6i5404y8fnlbq6kmr7x8s5s97d5lwkr3dg36"; depends=[dplyr ggplot2 lubridate PerformanceAnalytics plotly purrr quadprog quantmod readr rMorningStar rvest stringi stringr tidyr xml2 xts]; }; PortfolioAnalytics = derive2 { name="PortfolioAnalytics"; version="1.1.0"; sha256="1jy89brrdw8ilbi9pjxxq5yhqw85ik4kzdd2sa60crjlhvipx0ff"; depends=[foreach PerformanceAnalytics xts zoo]; }; PortfolioEffectEstim = derive2 { name="PortfolioEffectEstim"; version="1.4"; sha256="1sfgkwyn7vfy3rqb1cglywiv5xmyxhzvj38vgrvfq5jf3hvzsg21"; depends=[PortfolioEffectHFT rJava]; }; PortfolioEffectHFT = derive2 { name="PortfolioEffectHFT"; version="1.8"; sha256="0y4x0d91j6g52136d921hfs5swzf85gkxafxfkf3c15dl5ns120v"; depends=[ggplot2 rJava zoo]; }; @@ -3179,12 +3263,13 @@ in with self; { PoweR = derive2 { name="PoweR"; version="1.0.7"; sha256="040wc7hxa8y6bm1rs7ip2skdxmmwksxkyb6xzqgdjp8m7a25fppb"; depends=[Rcpp RcppArmadillo]; }; Power2Stage = derive2 { name="Power2Stage"; version="0.5.2"; sha256="1837pc94syhyl5i0kjdmlc1h7ckas3vcpwhvhgh46sv022lrg2gi"; depends=[cubature mvtnorm PowerTOST]; }; PowerNormal = derive2 { name="PowerNormal"; version="1.2.0"; sha256="1kryqcjvgwk0l4z3gqxdiz47mha3jw5583jlb9z7ml6v7cam06sm"; depends=[]; }; - PowerTOST = derive2 { name="PowerTOST"; version="1.4-9"; sha256="08qac2482v2b5s7nfhdn9x5gbl348yfwnzgqprh38qp16zzcylhg"; depends=[cubature mvtnorm TeachingDemos tufte]; }; + PowerTOST = derive2 { name="PowerTOST"; version="1.5-0"; sha256="0bsdrancxrymylakgxzgqgqmnbnp8ms09f323gffh985fmm1lxfc"; depends=[cubature mvtnorm TeachingDemos]; }; PowerUpR = derive2 { name="PowerUpR"; version="1.0.4"; sha256="0ng88x1zs4kb8cf2v51kynbp32iz41mh40my5sciyvjbw430bk59"; depends=[]; }; - PracTools = derive2 { name="PracTools"; version="1.2.1"; sha256="1viwmwis9awr7maprnaj0vdzc5rf6md7xlc9l7hnn51xmaa734ih"; depends=[]; }; + PracTools = derive2 { name="PracTools"; version="1.2.2"; sha256="08s8pm55814w6mjz3q4n1bcxccmjypb5qiws5g8pcafl6dj7z0wh"; depends=[]; }; PreKnitPostHTMLRender = derive2 { name="PreKnitPostHTMLRender"; version="0.1.0"; sha256="1749cd734f4bf0n4068s2m617k6as8h9bwp44mm3la2xy3vjf5g1"; depends=[knitr rmarkdown XML]; }; PreProcess = derive2 { name="PreProcess"; version="3.1.7"; sha256="1fxzkmrj76mc94xdj7a0nq450021i1jxkigmh5jhrmamkp5581jf"; depends=[oompaBase]; }; - PreciseSums = derive2 { name="PreciseSums"; version="0.3"; sha256="02w0pa9dd196sg6zg9w2fp4b0k6wibbw9rbvasr3aphh98kbd6ch"; depends=[]; }; + PreciseSums = derive2 { name="PreciseSums"; version="0.4"; sha256="054y84w3i5yrq74w2hsdxz1z1glccy540dq4jxicnknkkp2c0nmx"; depends=[]; }; + PredCRG = derive2 { name="PredCRG"; version="1.0.1"; sha256="070cpm4a90s9q78hw352g9bp49im39grd66s8d870likhr8fnrwv"; depends=[Biostrings kernlab Peptides protr]; }; PredPsych = derive2 { name="PredPsych"; version="0.4"; sha256="00h4p1szqzh4a2kjvlriyinh330cfwxsrvs6fi089mr207q890vj"; depends=[caret e1071 ggplot2 MASS mclust party plyr randomForest rpart statmod]; }; PredictABEL = derive2 { name="PredictABEL"; version="1.2-4"; sha256="144xmfsp62ssmg501f4y173jrqyv8vps36j4yrwg6ghcmyc01wf8"; depends=[Hmisc lazyeval PBSmodelling ROCR]; }; PredictionR = derive2 { name="PredictionR"; version="1.0-12"; sha256="0kgc8rjdqskasdaxsbir9gwvm55rw5cpdg3y9nsj7ccg9fc1ji19"; depends=[fitdistrplus Renext]; }; @@ -3201,17 +3286,17 @@ in with self; { ProTrackR = derive2 { name="ProTrackR"; version="0.3.7"; sha256="15m8g9v254avi68qr7v5q4fzhclkv1q849sj69fs0c9qcli1x384"; depends=[audio lattice signal tuneR XML]; }; ProbBayes = derive2 { name="ProbBayes"; version="1.1"; sha256="0bkbqyrmpy9swaxsl91w6iiw81znjf1lk4b0vqgn6wdnrir6gkmn"; depends=[ggplot2 gridExtra LearnBayes shiny]; }; ProbForecastGOP = derive2 { name="ProbForecastGOP"; version="1.3.2"; sha256="0fnw3g19lx4vs8vmn4qdirvybkiy2cxkhwkn9qa3phz45iixnvx4"; depends=[fields RandomFields]; }; - ProbMarg = derive2 { name="ProbMarg"; version="1.0.0"; sha256="0jv5d5zk7jq5si80rs69bvl7wssv2nihg35f2q4g7jkd7qmsbrq3"; depends=[]; }; + ProbMarg = derive2 { name="ProbMarg"; version="1.0.1"; sha256="02qc6c08vfg3inh14d3dzq28zgsgk9p7kb2ni9d14pcx5w9q6sji"; depends=[]; }; + ProbReco = derive2 { name="ProbReco"; version="0.1.0"; sha256="127gqc80ja4jwm0j2hc1gg3063knvgdhmr0l5i5iqpc64n6ljdnh"; depends=[BH mvtnorm purrr Rcpp RcppEigen StanHeaders]; }; ProbYX = derive2 { name="ProbYX"; version="1.1-0"; sha256="0dphf6jr72l235v3yjhwi8bqmv6ac7yrbyfwhx4qjrrcdnsb7qhl"; depends=[rootSolve]; }; ProbeDeveloper = derive2 { name="ProbeDeveloper"; version="1.0.0"; sha256="1d2zr8ikia3mspp2arpx7iwf4a4pq1ywl82pxbxrw6xpz313d5x9"; depends=[Biostrings TmCalculator]; }; - ProbitSpatial = derive2 { name="ProbitSpatial"; version="1.0"; sha256="0pq5bsjd00qc83c7x8vlpsxdksywlnfg7rlsvb6j21fz9wi3hpas"; depends=[Matrix numDeriv RANN Rcpp RcppEigen speedglm]; }; + ProcData = derive2 { name="ProcData"; version="0.2.5"; sha256="17nm9sxv9k5mqjqabla6ldz1781446z566vz8cqs6cg1i6ngkrw8"; depends=[keras Rcpp]; }; ProcMod = derive2 { name="ProcMod"; version="1.0.3"; sha256="17x4c9vgf14l1x3hx3vyv3ygl8bb5qzq7fxg2cnl910drcdnv5sz"; depends=[expm foreach MASS Matrix mvtnorm permute Rdpack]; }; ProfessR = derive2 { name="ProfessR"; version="2.4-1"; sha256="1wsbx0dsygc1ipzhgs1pd0lhdb0qvp4ydqzwarn6zv27rzf4p3bd"; depends=[RPMG]; }; ProfileLikelihood = derive2 { name="ProfileLikelihood"; version="1.1"; sha256="16cdp1nimhg1sd2x0qbffm7clgk54p0838y688z8lnsrjaggmb0x"; depends=[MASS nlme]; }; ProfoundData = derive2 { name="ProfoundData"; version="0.2.1"; sha256="1zqg821pv3i5nf76s7yppnmy13y14pj0l7rjhk50wlxrxdb53ibz"; depends=[DBI RNetCDF RSQLite settings sqldf zoo]; }; - ProgGUIinR = derive2 { name="ProgGUIinR"; version="0.0-4"; sha256="0srhk42ssx4i096sbs4jacqjsc1ffqjxjgvpplzshlqaby1h3795"; depends=[ggplot2 MASS svMisc]; }; - ProjectManagement = derive2 { name="ProjectManagement"; version="1.2.4"; sha256="1lv1yf6xslskjqz7mgi8brvpix9g7k0yy6q03gckz1rmcakzqj5p"; depends=[GameTheory kappalab lpSolveAPI plotly triangle]; }; - ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.9.1"; sha256="045xyycn2xjxb40vm6nvkp5csxzxasz9pqdnrgapv0ycf02s0c17"; depends=[]; }; + ProjectManagement = derive2 { name="ProjectManagement"; version="1.3.3"; sha256="186vq7kd2rzqml88q6iskwb9h1xbl0azkn4dv2msd04klw6fir7j"; depends=[GameTheory igraph kappalab lpSolveAPI plotly triangle]; }; + ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.9.2"; sha256="0ni0clx9k4amkhkss9ssw3gn40z6mnbxn1gaxgnphaasw0hj1mql"; depends=[]; }; ProjectionBasedClustering = derive2 { name="ProjectionBasedClustering"; version="1.1.1"; sha256="17y1yf8cbcl3yha7mbk22lxmk2v5n98mfqsa886a3012ang4m5sp"; depends=[deldir GeneralizedUmatrix geometry ggplot2 plotly Rcpp shiny shinyjs shinythemes vegan]; }; ProliferativeIndex = derive2 { name="ProliferativeIndex"; version="1.0.1"; sha256="03ipsbs8pfwr8wsx7j2y9c67ic4qcady7xpa47l8dr14ff63cfk7"; depends=[]; }; PropCIs = derive2 { name="PropCIs"; version="0.3-0"; sha256="1ywzi88igzaj2wnbrqa08cy7pw886z2m0x3j7rk45rin9mgpfdfd"; depends=[]; }; @@ -3225,17 +3310,17 @@ in with self; { PtProcess = derive2 { name="PtProcess"; version="3.3-13"; sha256="0vk1n7hk6v592fi5ld70db6m92zgpjx97axs5h8p53c29984qhwz"; depends=[]; }; PubBias = derive2 { name="PubBias"; version="1.0"; sha256="0dr5dhfx57knrs05pbx9ngg4k2937n8gjzsgd0jfqd8dfxhy051k"; depends=[R_utils rmeta]; }; PubMedWordcloud = derive2 { name="PubMedWordcloud"; version="0.3.6"; sha256="1wfp1fpr4an7psrwidx38brvhvghmvfsgjy4gdx81p1bdsdn2kw2"; depends=[RColorBrewer RCurl stringr tm wordcloud XML]; }; - PublicationBias = derive2 { name="PublicationBias"; version="2.0.0"; sha256="15y5pigmv29m627jfkrwgfn224s257ns058p72mawl8yl10bj9fy"; depends=[dplyr ggplot2 metafor MetaUtility Rdpack robumeta]; }; + PublicationBias = derive2 { name="PublicationBias"; version="2.2.0"; sha256="1mdvzf2qiq4zvp4iinjnnj0rq3dqcz18r27nr62znh05jp6i96gx"; depends=[dplyr ggplot2 metafor MetaUtility Rdpack robumeta]; }; Publish = derive2 { name="Publish"; version="2019.12.04"; sha256="0vcfz6hx2bkwrksz6b0rx0w6j24h3qswgca06jhgq3jzvsmjjckx"; depends=[data_table lava multcomp prodlim survival]; }; PupilPre = derive2 { name="PupilPre"; version="0.6.2"; sha256="123m1zqld0jl26vqz41iic7vxzyfs1aw8zi5ki2cy6wzw9ss87m6"; depends=[dplyr ggplot2 mgcv rlang robustbase shiny signal tidyr VWPre zoo]; }; - PupillometryR = derive2 { name="PupillometryR"; version="0.0.1"; sha256="0fn1cm43jzkdph06awg741x31v5674vxb8zgnz3pfh585jggkb3j"; depends=[data_table dplyr fda fractal ggplot2 lazyeval mgcv rlang signal tidyr zoo]; }; + PupillometryR = derive2 { name="PupillometryR"; version="0.0.3"; sha256="19llm6p67z0z29zxmjfz9ad624428szdjdd1ssj7j3zjcyjvqihy"; depends=[data_table dplyr fda ggplot2 itsadug lazyeval mgcv rlang signal tidyr zoo]; }; PurBayes = derive2 { name="PurBayes"; version="1.3"; sha256="0nbm4cyrwfbwwbjbjkylr86cshaqbvbif6dkp4fag8kbcgyyx5qh"; depends=[rjags]; }; Pursuit = derive2 { name="Pursuit"; version="1.0.1"; sha256="0c4bc0ldfx02a8ws3g3gn7smikg3fdjygybs3q764kxhq88kv42l"; depends=[MASS]; }; PxWebApiData = derive2 { name="PxWebApiData"; version="0.3.0"; sha256="1c2liqh1asd0mk4cvrwpl4pdid2rqfxrma284ah4hwr6sah5lk6w"; depends=[httr jsonlite pxweb rjstat]; }; - PythonInR = derive2 { name="PythonInR"; version="0.1-11"; sha256="099wsy44g3vh19vixn1ili7fd0a6q5x09hj4hp4i8cf51nihmk2q"; depends=[pack R6]; }; - QAIG = derive2 { name="QAIG"; version="0.1.5"; sha256="1cchf5x7wzc3mc6xzvq14kmd9yxr9kq237s8af4xqaz1pv0b093j"; depends=[Formula stringr]; }; + PythonInR = derive2 { name="PythonInR"; version="0.1-12"; sha256="0f6jijbqdn6p2530l4v0b0ys1gcgji1d1i63bcd8g1ml21grvyfg"; depends=[pack R6]; }; + QAIG = derive2 { name="QAIG"; version="0.1.7"; sha256="04ygizvplvrzhf1p0vwj75x7k8sl0ym5zbrsvn63y983awih2p6i"; depends=[Formula stringr]; }; QBAsyDist = derive2 { name="QBAsyDist"; version="0.1.2"; sha256="1yql29npaq9yz02bv3hqf5m2mhscjms7qqf4vlaxm8s665rxcxad"; depends=[ald Deriv GoFKernel locpol nloptr quantreg scdensity zipfR]; }; - QCA = derive2 { name="QCA"; version="3.7"; sha256="0m78ky2w988d46jk5idhg2vyn8sw5sdvl0gv479snjxidjb78mml"; depends=[admisc lpSolve shiny venn]; }; + QCA = derive2 { name="QCA"; version="3.8.2"; sha256="08gja6m64xwwq2ka2a4chsgbliczaj93kq90dcsa4dhwk202w2r4"; depends=[admisc shiny venn]; }; QCAfalsePositive = derive2 { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; }; QCApro = derive2 { name="QCApro"; version="1.1-2"; sha256="1glfb1x1h05cs07nq5glqvlil58wp3c0kaxi1l7k94y797i8r7hq"; depends=[lpSolve]; }; QCAtools = derive2 { name="QCAtools"; version="0.2.3"; sha256="1q49l2mf02hqvz2ahqjdx7i3yxniy7dn2s74xjl9l6zdq8bypfw2"; depends=[directlabels ggplot2 QCA stringr]; }; @@ -3246,6 +3331,7 @@ in with self; { QDComparison = derive2 { name="QDComparison"; version="3.0"; sha256="0y4494r3ixkyh58xr9md7c6xgcj1hgbjzfybvqqdbawjxvy5p38i"; depends=[]; }; QFASA = derive2 { name="QFASA"; version="1.0.3"; sha256="1yw745wk9ijvqs3hv0gbm6bkzjrlj42ipwbzypj73s3f7ygl452f"; depends=[boot futile_logger gamlss gamlss_dist Rsolnp]; }; QFRM = derive2 { name="QFRM"; version="1.0.1"; sha256="1k79sq9il4326q7ivwdwlzw7drjv4pwqra3fr8kyyqcpmxh9296h"; depends=[]; }; + QGameTheory = derive2 { name="QGameTheory"; version="0.1.2"; sha256="0h3qkb0zg6km3s89bjnv9503hgcng4wfywfy1x5dsbj5azs9hs5w"; depends=[dplyr R_utils RColorBrewer]; }; QGglmm = derive2 { name="QGglmm"; version="0.7.4"; sha256="0ghvicz4ia1180byj28lmg49889hqhb94g1jrkhm6hnzgqbjnfmd"; depends=[cubature]; }; QHOT = derive2 { name="QHOT"; version="0.1.0"; sha256="02z0n2jawd6m7bvyvpcy0j13p1c0zm036g62n56xva18qnq5c9lb"; depends=[]; }; QLearning = derive2 { name="QLearning"; version="0.1.1"; sha256="1bx77yxsnzh0ny3ghala5fw54lxzrxqk9s32qk3dzvfbyp4paggn"; depends=[]; }; @@ -3256,15 +3342,13 @@ in with self; { QRank = derive2 { name="QRank"; version="1.0"; sha256="1f924r5bf5vjfl12hk1n5m3f94g30f6vmvzq2bn8295dflyndck0"; depends=[quantreg]; }; QRegVCM = derive2 { name="QRegVCM"; version="1.2"; sha256="0fcydkf6r2qxd59ylr8vn76bkxks91v58gfzvq3rjd5mqf9vsaaq"; depends=[quantreg SparseM truncSP]; }; QSARdata = derive2 { name="QSARdata"; version="1.3"; sha256="0dhldnh0jzzb4assycc0l14s45ymvha48w04jbnr34lrwgr9krh4"; depends=[]; }; - QTL_gCIMapping = derive2 { name="QTL.gCIMapping"; version="3.2"; sha256="0a4ki5scmc771sr79maian7y790bw71l67d1qpc09qprmf9i36jl"; depends=[data_table doParallel foreach MASS openxlsx parcor qtl Rcpp stringr]; }; - QTL_gCIMapping_GUI = derive2 { name="QTL.gCIMapping.GUI"; version="2.0"; sha256="0jj6w8z99vpzgh76lv53zj8nv9p57y3502prr6xwkshj6rp8q1zv"; depends=[data_table doParallel foreach MASS openxlsx parcor qtl QTL_gCIMapping Rcpp shiny stringr]; }; + QTL_gCIMapping = derive2 { name="QTL.gCIMapping"; version="3.3"; sha256="15c43n0cazgzfg1w36vqb5mp4ylsglzzgbdziiqsjqwrhj8hnc6d"; depends=[data_table doParallel foreach glmnet MASS openxlsx qtl Rcpp stringr]; }; + QTL_gCIMapping_GUI = derive2 { name="QTL.gCIMapping.GUI"; version="2.1"; sha256="0m1asf1np9snjb9fj4pzrp34iwrfij44ampvw4ca58fdpaiqmx9h"; depends=[data_table doParallel foreach glmnet MASS openxlsx qtl QTL_gCIMapping Rcpp shiny stringr]; }; QTLRel = derive2 { name="QTLRel"; version="1.6"; sha256="1198qrrl7samm4jzliy5i8wfvladz6wpm48l1g2x6ackm1asiw75"; depends=[gdata lattice]; }; QTOCen = derive2 { name="QTOCen"; version="0.1.1"; sha256="0wlbxk1rd56k02jf3pfzbx6xx5mmf6sb7gvds0067cvb7m42ghcr"; depends=[MatrixModels quantreg Rdpack rgenoud survival]; }; QUALYPSO = derive2 { name="QUALYPSO"; version="1.1"; sha256="0qpjv6krz66qfgyzndxihy5shmlsb0zs3wh49sxp00fh2bci5msw"; depends=[doParallel expm foreach MASS Rfast]; }; - QUIC = derive2 { name="QUIC"; version="1.1"; sha256="021bp9xbaih60qmss015ycblbv6d1dvb1z89y93zpqqnc2qhpv3c"; depends=[]; }; - QVM = derive2 { name="QVM"; version="0.1.1"; sha256="0dnr4h4084n505vrxfrx3czrkqdbna8s4fxpwr5czfilbfbxhpar"; depends=[gWidgets IMPACT ltm multilevel mvtnorm nlme pander psych]; }; QZ = derive2 { name="QZ"; version="0.1-9"; sha256="0i6cgywnfk8klsfr6x35fxzdshfhmps0b1fs5c7199r1rby0b3sc"; depends=[Matrix]; }; - Qtools = derive2 { name="Qtools"; version="1.5.1"; sha256="0bcn0r1548vnz59n6vgl66mvjsvq299yf3v2vv58hy4pd171mhzi"; depends=[boot glmx MASS Matrix mice np numDeriv quantreg Rcpp RcppArmadillo]; }; + Qtools = derive2 { name="Qtools"; version="1.5.2"; sha256="1nv8s0q6snpw8lvf5lm6yf8fcf5cb2c32vswp9b9garv4gai2zmk"; depends=[boot glmx Gmisc MASS Matrix mice np numDeriv quantreg Rcpp RcppArmadillo]; }; QuACN = derive2 { name="QuACN"; version="1.8.0"; sha256="1597blp8gqc5djvbgpfzi8wamvy0x50wh5amxj9cy99qa0jlglxi"; depends=[combinat graph igraph RBGL]; }; QuClu = derive2 { name="QuClu"; version="0.1.0"; sha256="0a2malh9vz5jcjgdx4d98k0c61vz3ip8ynqh5i85x8hzcby11qgj"; depends=[]; }; QualInt = derive2 { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; }; @@ -3287,7 +3371,7 @@ in with self; { R_matlab = derive2 { name="R.matlab"; version="3.6.2"; sha256="1fw6ny8xb2j088k3s9lzd15av3j6xc2bvbccyrp7yjx2f3s3i8qv"; depends=[R_methodsS3 R_oo R_utils]; }; R_methodsS3 = derive2 { name="R.methodsS3"; version="1.8.0"; sha256="19c5870v7b59fs6xk58bh3rfkmhfralmgsax86zzpdmz47pga1g0"; depends=[]; }; R_oo = derive2 { name="R.oo"; version="1.23.0"; sha256="189fb7mmyzwg6nn8rza8iip7fbyws7i2vkmzy672x9mhvgilq4pm"; depends=[R_methodsS3]; }; - R_rsp = derive2 { name="R.rsp"; version="0.43.2"; sha256="128zqyvbq9hm9gy86jzhj609lkfw57vr24mdxgh46ncmx66ag4gj"; depends=[digest R_cache R_methodsS3 R_oo R_utils]; }; + R_rsp = derive2 { name="R.rsp"; version="0.44.0"; sha256="0n9sxrffahgxcc8h9vgxg5i446g14cibixpf82nkpm5bvidhfsc9"; depends=[digest R_cache R_methodsS3 R_oo R_utils]; }; R_temis = derive2 { name="R.temis"; version="0.1.2"; sha256="1bar4vyjnc9plwqm66vbgf6rakgj095zb7wsypmf3j3az694y62q"; depends=[crayon explor FactoMineR igraph NLP slam SnowballC stringi testthat tm tm_plugin_alceste tm_plugin_europresse tm_plugin_factiva tm_plugin_lexisnexis wordcloud]; }; R_utils = derive2 { name="R.utils"; version="2.9.2"; sha256="1krj1ny7y43lpm2q8c7swxfdc3ngy2j8knzv71f8bfsgh673nsxc"; depends=[R_methodsS3 R_oo]; }; R0 = derive2 { name="R0"; version="1.2-6"; sha256="1yvcgchxlj7hkgqkw6g8pxnracxkld1grgykkcr6wbhminbylqv8"; depends=[MASS]; }; @@ -3299,12 +3383,12 @@ in with self; { R2DGC = derive2 { name="R2DGC"; version="1.0.3"; sha256="0f84fmpf3m2s2p6bllvjs8rgnhwjy54adblv02dq8gakwvb4j2aw"; depends=[]; }; R2DT = derive2 { name="R2DT"; version="0.2"; sha256="0hyisq6mij80v14sjspn9idd1h38sd1knbpd0dn2wy9k2w1fl0pk"; depends=[data_table devFunc plyr]; }; R2HTML = derive2 { name="R2HTML"; version="2.3.2"; sha256="00kxny7hajs9r2kw63qk7d03ggdxx2j1g8vbrmzp806y8aczvik9"; depends=[]; }; - R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-6"; sha256="1qhhigb9yryciq3j28q7wcvyw49nvf2mb8m9nj1c14z0pchi7xir"; depends=[coda digest doParallel foreach foreign lattice Matrix memisc R2WinBUGS texreg]; }; + R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-7"; sha256="1r12b0gy5747acn0jyf3n2f210a51pgl6vkk1rd4fbbj0dk5bwmf"; depends=[broom coda digest doParallel foreach foreign lattice Matrix memisc R2WinBUGS texreg tibble]; }; R2OpenBUGS = derive2 { name="R2OpenBUGS"; version="3.2-3.2.1"; sha256="0689aqa034xkbyy46m3sjanjkxrii4ma1crm5qw5kaqbx7dg153c"; depends=[boot coda]; }; - R2SWF = derive2 { name="R2SWF"; version="0.9-2"; sha256="1f7bj2jqm7ys3rimgpsn252j39mw0xd008p3zqi77x1flisla0z3"; depends=[sysfonts]; }; + R2SWF = derive2 { name="R2SWF"; version="0.9-4"; sha256="1yz4l4wn6a00bjwsnzfbg5lfxd4n8fqzqmbqgl2xj458azwl74z0"; depends=[sysfonts]; }; R2WinBUGS = derive2 { name="R2WinBUGS"; version="2.1-21"; sha256="0k8k214x712vjj2k1am4zzf6scccs3b98ysiz4lwxpzm818wp1ps"; depends=[boot coda]; }; R2admb = derive2 { name="R2admb"; version="0.7.16.2"; sha256="1gwp850ff76lqqn6amj75rjqb1szk6x2vlhqgwng4z45i56bmdf7"; depends=[coda lattice]; }; - R2jags = derive2 { name="R2jags"; version="0.5-7"; sha256="0h1d27cddyacx5m5f23rlki97iwni7clffmb2k7a4bznlnjhn50a"; depends=[abind coda R2WinBUGS rjags]; }; + R2jags = derive2 { name="R2jags"; version="0.6-1"; sha256="0h5si5d8yn6zxbfmv38kmyqhpwm1valnnn3sb445465m8rafl5y6"; depends=[abind coda R2WinBUGS rjags]; }; R2ucare = derive2 { name="R2ucare"; version="1.0.0"; sha256="1nh2wf3syxjz9flxhf8x9fd2c2ndn4dha4k34lz1nq5j4qz7wfp1"; depends=[RMark stringr]; }; R330 = derive2 { name="R330"; version="1.0"; sha256="01sprsg7kph62abhymm8zfqr9bd6dhihrfxzgr4pzi5wj3h80bjm"; depends=[lattice leaps rgl s20x]; }; R3port = derive2 { name="R3port"; version="0.2.3"; sha256="0m0nkmr0hj4dhb762vnin3iqhp6j4a73aslgz59wwlqi7v421vaj"; depends=[plyr reshape2 tinytex whisker]; }; @@ -3315,9 +3399,8 @@ in with self; { RAC = derive2 { name="RAC"; version="1.5"; sha256="0q0kk9j3blrnhv0rfmryc35lli5j4kds2vmjdpg77znagb45609k"; depends=[maps maptools matrixStats ncdf4 plotrix raster rgdal rgeos rstudioapi sp]; }; RAD = derive2 { name="RAD"; version="0.3"; sha256="0nmgsaykxavq2bskq5x0jvsxzsf4w2gqc0z80a59376li4vs9lpj"; depends=[MASS mvtnorm]; }; RADanalysis = derive2 { name="RADanalysis"; version="0.5.5"; sha256="1py07p24i1pky8wwyy8ajmkg6h2n7nbpxp1w6lrkiyl0p2kgjm20"; depends=[scales sfsmisc]; }; - RAINBOWR = derive2 { name="RAINBOWR"; version="0.1.14"; sha256="1jf1mk6bvi5ybsdrgxvlr0ksnkncn3cpqvz82d28yd9kml2a8q80"; depends=[cluster MASS Matrix optimx pbmcapply Rcpp RcppEigen rgl rrBLUP]; }; + RAINBOWR = derive2 { name="RAINBOWR"; version="0.1.19"; sha256="1h5z8dwla6bzl0chgczy68dqilxwldaabl0jc8xg3zp30yghxf4g"; depends=[ape cluster MASS Matrix optimx pbmcapply Rcpp RcppEigen rgl rrBLUP stringr]; }; RAM = derive2 { name="RAM"; version="1.2.1.7"; sha256="0aalswivpjs1glwf4yh3b79lch3n32fyj5xda55h3v7gzs7p0d7f"; depends=[ade4 ape data_table FD ggmap ggplot2 gplots gridExtra labdsv lattice MASS permute phangorn phytools plyr RColorBrewer reshape reshape2 RgoogleMaps scales vegan VennDiagram]; }; - RAMClustR = derive2 { name="RAMClustR"; version="1.0.9"; sha256="0fw8gps8lyjffrqklfk8ps4fn8ail2m6b54q3805pcw27mb9jxml"; depends=[BiocManager dynamicTreeCut e1071 fastcluster ff gplots httr InterpretMSSpectrum jsonlite pcaMethods preprocessCore RCurl stringi stringr webchem xml2]; }; RAMP = derive2 { name="RAMP"; version="2.0.2"; sha256="0836fiycrsxiwdw7srz1rvsf639iqh2rk89gavx4kvn0i0sc8d2x"; depends=[]; }; RAMpath = derive2 { name="RAMpath"; version="0.4"; sha256="0blixfmgiq22hd356hrp4vbhfkkgh0a58143nhirjx3sav9pxc1v"; depends=[ellipse lavaan MASS]; }; RANKS = derive2 { name="RANKS"; version="1.0"; sha256="1lvaya9jlqrr9klqznw4fz5h5x0sw191ci74hpymb4gzhhxcbp27"; depends=[graph limma NetPreProc PerfMeas RBGL]; }; @@ -3331,24 +3414,23 @@ in with self; { RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.4"; sha256="0z08xwdn3vzwmprx5yh2xip5bqk13zrd47lwnsa2yin2phz6yry1"; depends=[]; }; RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.0"; sha256="0gm2j8kh40imhncwwx1sx9kmraaxcxycvgwls53lcyy2ap344k9j"; depends=[]; }; RAppArmor = derive2 { name="RAppArmor"; version="3.2.1"; sha256="0n75clpha3452jqk4idb6kffc4zw3vim60k5wh7ajcpwab10j94s"; depends=[unix]; }; - RAthena = derive2 { name="RAthena"; version="1.8.0"; sha256="0i428qcw3myaiy9zyc2wzwaj2d4sv8lg7w8nqppkb00nslv00il8"; depends=[data_table DBI reticulate]; }; - RBF = derive2 { name="RBF"; version="1.0.0"; sha256="0q2k2ar9cd62cykg99r86cflx2nknlg32fhhsjay4xs191fapw8j"; depends=[]; }; + RAthena = derive2 { name="RAthena"; version="1.10.0"; sha256="116h61850spygvkx64bd8jq9gx5s72bk4cnf70mmyjxbkiyvg3ps"; depends=[data_table DBI reticulate]; }; + RBF = derive2 { name="RBF"; version="2.0.1"; sha256="1jkjyhb9mdqh59cnyn5x83624cy1wg328x83l422qyh20nckvszp"; depends=[]; }; RBMRB = derive2 { name="RBMRB"; version="2.1.2"; sha256="1m6n2kfg83mlfy22k75hy5zjf547v0rdwk9w6l04yfyrr6himbr8"; depends=[data_table ggplot2 httr plotly rjson]; }; - RBNZ = derive2 { name="RBNZ"; version="1.0.1"; sha256="1bcjxzysdi1jhf46najppx86b791bxdgdq0xx8pjg57f6cwvws52"; depends=[httr lubridate readxl rvest xml2]; }; + RBNZ = derive2 { name="RBNZ"; version="1.1.0"; sha256="11fdnc2pmw5nq3lswid078l307ln6853a3b9d383msvrkz6yms26"; depends=[httr lubridate readxl rvest xml2]; }; RBPcurve = derive2 { name="RBPcurve"; version="1.2"; sha256="0zkfvnhm780vid4qqdrx9mnc6jxxrmrnq47pqvk35rm3m4l96782"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; - RBaseX = derive2 { name="RBaseX"; version="0.2.4"; sha256="0y3mza485jj7aj3x4hnspkkgsg8y3zmgvhd3zb9p01iafa3ck91p"; depends=[dplyr magrittr openssl R6 RCurl stringr tibble]; }; - RBesT = derive2 { name="RBesT"; version="1.6-0"; sha256="0wanwx42ayy4likabdjkamzrlwgkwvas1mpcjdrsxirrl7bs38ds"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 mvtnorm Rcpp RcppEigen rstan StanHeaders]; }; + RBaseX = derive2 { name="RBaseX"; version="0.3.0"; sha256="15hn04ijvqbza8brca7g06yi621hyf3gjgkfvf1wp4jgzysgd8ww"; depends=[data_table dplyr magrittr openssl R6 RCurl stringr tibble]; }; + RBesT = derive2 { name="RBesT"; version="1.6-1"; sha256="11xzjw71mnn4s7z0r58vfb19ls08jflj6917iichfz7k5sxnh9qm"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 mvtnorm Rcpp RcppEigen rstan StanHeaders]; }; RBitmoji = derive2 { name="RBitmoji"; version="0.0.2"; sha256="1v9qj3vmqsvnccsy735nbflmd81183h2flm0f1ckd4kl08r2fr3f"; depends=[getPass httr jsonlite png RCurl]; }; RBtest = derive2 { name="RBtest"; version="1.1"; sha256="09da721zfj6cw4i9gifn5f0sv3nj0qfjb96c5w9g9gzx55ihssnk"; depends=[mice nnet psych]; }; RCA = derive2 { name="RCA"; version="2.0"; sha256="0pidb5czrf0dc3ywy6cwm5akgsc62pvf94kfyxibzmd1favykx1h"; depends=[gplots igraph]; }; RCAL = derive2 { name="RCAL"; version="1.0"; sha256="1hpn69891h9cildwr6wsssa3fnnzyw0xw9vfgf4qdg0m9x6il6qb"; depends=[trust]; }; RCALI = derive2 { name="RCALI"; version="0.3.1"; sha256="0hc7h55qi8bpmp9rfh1wgxqs28kbs4yqxch2jlgl42vk5383askq"; depends=[splancs]; }; RCEIM = derive2 { name="RCEIM"; version="0.3"; sha256="1kil5r88b6lf8vxmswz0wn0hhjxjm8jmlcl5kxjwl6fwjyy2z120"; depends=[]; }; - RCMIP5 = derive2 { name="RCMIP5"; version="1.2.0"; sha256="0bwp1ln0y48g2d0bj9b47y0rlwffzv0pi6gjfzv4sg5anhswc9x7"; depends=[abind assertthat digest dplyr Matrix]; }; RCPmod = derive2 { name="RCPmod"; version="2.190"; sha256="1r24g8fcizyqzgp0da90sxpwalgcsgz2b168j2smpylxraiqb037"; depends=[fishMod glmnet gtools MASS]; }; RCRnorm = derive2 { name="RCRnorm"; version="0.0.2"; sha256="1mz1jb7mc9c47hbk9flnddny4zir6r2k5qis30iynwqny521l6ln"; depends=[truncnorm]; }; RCSF = derive2 { name="RCSF"; version="1.0.2"; sha256="1hjl7qsdgcddn3nh2likndhfhnw9gj3453xqq96gddgb1y0m3bh1"; depends=[Rcpp]; }; - RCT = derive2 { name="RCT"; version="1.0.1"; sha256="07lhss3v13nmn3hr3ky0vdc2miavy0bpymginibn302f07kf8hys"; depends=[broom dplyr forcats ggplot2 glue lfe magrittr MASS pracma purrr rlang stringr tidyr tidyselect]; }; + RCT = derive2 { name="RCT"; version="1.0.3"; sha256="04p9pc9s7gwjly5d8c7xa2x9y7jz1mcf8jxbjql1x2wvwsbmkq6z"; depends=[broom dplyr forcats ggplot2 glue lfe magrittr MASS pracma purrr rlang stringr tidyr tidyselect]; }; RCarb = derive2 { name="RCarb"; version="0.1.3"; sha256="0z5hpnlzlvbh14f1wjy9rw4ljdsiqdzmqnmh3yqz7mbw5qxx4gzz"; depends=[interp matrixStats]; }; RCassandra = derive2 { name="RCassandra"; version="0.1-3"; sha256="0xa241s81cyw6lfjb522f2mlyrd0gav9yz3z5jab9hpdpgg9ri38"; depends=[]; }; RChronoModel = derive2 { name="RChronoModel"; version="0.4"; sha256="0haqxwic160pnnm90bgchzxmsdwmi6m97i9xrh8js8bp2xn76l5f"; depends=[hdrcde]; }; @@ -3360,8 +3442,8 @@ in with self; { RConics = derive2 { name="RConics"; version="1.0"; sha256="1lwr7hi1102gm8fi9k5ra24s0rjmnkccihhqn3byckqx6y8kq7ds"; depends=[]; }; RCriteo = derive2 { name="RCriteo"; version="1.0.2"; sha256="1vyhnblw9zr5h6c25lf76p9vn95k8vr0hpq1sjkccdwl9yvsyhfy"; depends=[httr plyr RCurl XML]; }; RCurl = derive2 { name="RCurl"; version="1.98-1.2"; sha256="1a57jm41550ah3v7cqdv5gdabhp375qgcndr901lns65qg6s0x2x"; depends=[bitops]; }; - RCzechia = derive2 { name="RCzechia"; version="1.4.6"; sha256="1p2np23pyvx6161ad3kcskjvipx5g3dgr58v0pdj7lh1lqnyqzc9"; depends=[curl dplyr httr jsonlite magrittr rlang sf]; }; - RDFTensor = derive2 { name="RDFTensor"; version="1.1"; sha256="1xbar13snwyls6rva91bs0632zplfc2qcqlwf7h07r8798m3234s"; depends=[Matrix pracma]; }; + RCzechia = derive2 { name="RCzechia"; version="1.5.1"; sha256="1mxkwrlfg16vpah865lj0519a3vr5icbwsdj33bybkn4gmxfjl3a"; depends=[curl dplyr httr jsonlite magrittr rlang sf]; }; + RDFTensor = derive2 { name="RDFTensor"; version="1.2"; sha256="0ijqb78wwjgz2x52z4zr1mn0lmcj8c0gx04j67cld8zfcqkn0mpg"; depends=[doParallel foreach Matrix pracma]; }; RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; }; RDML = derive2 { name="RDML"; version="1.0"; sha256="13ly1p42njbcygwvkyii8sjqbsywjy5w5g1kd7m8kswi5dsk3qqv"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; }; RDS = derive2 { name="RDS"; version="0.9-2"; sha256="01axx9l71j2v57ss9qfhih8jpmy5ayhyjxxvyp4dwxpr5rynfxna"; depends=[anytime ergm ggplot2 gridExtra Hmisc igraph isotone network reshape2 scales statnet_common]; }; @@ -3374,7 +3456,7 @@ in with self; { REAT = derive2 { name="REAT"; version="3.0.2"; sha256="0x5cal502n8abynx1jk2ccmmggvd41rvd2gc6rxkbyvcp4794l82"; depends=[]; }; REBayes = derive2 { name="REBayes"; version="2.2"; sha256="1jh5vw9pbcf5gpmx3b5b36fh8rz5y8npx53aai0kxh49kjf8d63c"; depends=[Matrix reliaR]; }; RECA = derive2 { name="RECA"; version="1.7"; sha256="1xikj20flqajpkw4wyynmqd1pafbylzwfrmc8bz9pqgggjjhrqql"; depends=[]; }; - REDCapExporter = derive2 { name="REDCapExporter"; version="0.2.0"; sha256="0h9sz5hd5b0paqybid8xjx7lbirlknazx11phylqixmnl9a8qra3"; depends=[data_table keyring lubridate RCurl]; }; + REDCapExporter = derive2 { name="REDCapExporter"; version="0.2.1"; sha256="14hnqjp53w4dl0fwlkr9x9qqm022280r0069akiz4c9axlmyds9r"; depends=[curl data_table keyring lubridate]; }; REDCapR = derive2 { name="REDCapR"; version="0.11.0"; sha256="0frhmnm25w9b84qk7vvvr8wkv1w3dmm0vqxav2cs7jimq38zwcvz"; depends=[checkmate dplyr httr magrittr readr rlang tibble tidyr]; }; REEMtree = derive2 { name="REEMtree"; version="0.90.3"; sha256="01sp36p12ky8vgsz6aik80w4abs70idr9sn4627lf94r92wwwsbc"; depends=[nlme rpart]; }; REGENT = derive2 { name="REGENT"; version="1.0.6"; sha256="1f2sjqkhw3rbmwbcmx7l7imj696kblisi8y3fz77xygbcbxa6rmq"; depends=[]; }; @@ -3388,13 +3470,13 @@ in with self; { REdaS = derive2 { name="REdaS"; version="0.9.3"; sha256="09mmcvzgsxvrcq7sq3pw81pxgb1493p8lx8p5hhz8i42vshza6pn"; depends=[]; }; REddyProc = derive2 { name="REddyProc"; version="1.2.2"; sha256="0b1vyv92wxbvdh1jaqmfb4qb1clpbh50j8h55nq777zc1l9ml4a7"; depends=[dplyr magrittr mlegp purrr Rcpp rlang solartime tibble]; }; REddyProcNCDF = derive2 { name="REddyProcNCDF"; version="1.1.4"; sha256="099f4mzqj7pjlrs8rdjg44mjm0058x3pj2imrfvk892hmlk4r53p"; depends=[REddyProc]; }; - REndo = derive2 { name="REndo"; version="2.3.1"; sha256="0v0p750nbvmr70qhmq4h995xfnp1phmwa990ifgk8y1ka7frwzrx"; depends=[AER corpcor data_table Formula lme4 Matrix mvtnorm optimx]; }; + REndo = derive2 { name="REndo"; version="2.4.0"; sha256="0rm5fizgqjwsh6n4ld2vr3i7ynxx8dsxh9vfvn6khjnc78l4jlwp"; depends=[AER corpcor data_table Formula lme4 lmtest Matrix mvtnorm optimx Rcpp RcppEigen]; }; RFGLS = derive2 { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; }; RFLPtools = derive2 { name="RFLPtools"; version="1.6"; sha256="1hl2crg7jl266zac41xvx151h7kl52346wnlvd8hba64s4s4apay"; depends=[RColorBrewer]; }; RFOC = derive2 { name="RFOC"; version="3.4-6"; sha256="0cs5wmpvrlag9aisbfiwkvwcb3skv5z4sawl30krmsq49mzj7yhd"; depends=[GEOmap MASS RPMG RSEIS splancs]; }; RFinanceYJ = derive2 { name="RFinanceYJ"; version="0.3.1"; sha256="0qhmzsch7c2p0zckjkspsajzh8m10cf75ixjlgd0nj8rm41fngm3"; depends=[XML xts]; }; RFishBC = derive2 { name="RFishBC"; version="0.2.3"; sha256="1xhjsinb6dfr1zzzyvawc6bb10dnr3nbx86mi6lrzav42sbq31ni"; depends=[cli clisymbols crayon readbitmap rlang settings stringr tidyr withr]; }; - RFmerge = derive2 { name="RFmerge"; version="0.1-6"; sha256="1pskpfn9wcjq54szcskqakgnv0wwikyadhb1780icivmp10nklnn"; depends=[pbapply randomForest raster sf sp zoo]; }; + RFmerge = derive2 { name="RFmerge"; version="0.1-10"; sha256="1gcdd0a0czimzmzq2izskdaj26cc7qchrwlhssvnh5k59yx54r4l"; depends=[pbapply randomForest raster sf sp zoo]; }; RForcecom = derive2 { name="RForcecom"; version="1.1"; sha256="1ch1pwpnqagzb9n4qbgr804bmnz819kp36r5a4zhijmq8xpv3qr2"; depends=[httr plyr RCurl XML]; }; RFormatter = derive2 { name="RFormatter"; version="0.1.1"; sha256="0jmzdc2cl4vvffsyfwp493fiygh9xinhv970qxp1667rw8wlap8l"; depends=[formatR]; }; RFreak = derive2 { name="RFreak"; version="0.3-0"; sha256="1dmllxb6yjkfkn34f07j2g7w5m63b5d10lh9xsmxyfk23b8l3x0x"; depends=[rJava]; }; @@ -3406,6 +3488,7 @@ in with self; { RGENERATEPREC = derive2 { name="RGENERATEPREC"; version="1.2.5"; sha256="1jqyp91x569la1vc6wl6v7jq6iq1cx2qkds9yiqm85bgzydp4lxw"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN stringr]; }; RGF = derive2 { name="RGF"; version="1.0.6"; sha256="11pnbiyp39r95c8ajj2jyxz4h1zf6fi8ki78rmn4vp7xm2bl3zff"; depends=[Matrix R6 reticulate]; }; RGIFT = derive2 { name="RGIFT"; version="0.1-5"; sha256="1745fs4bq0ss39fiwljspvrmnkgbbpc1fjvhvcrsmp2iizq12sgn"; depends=[]; }; + RGISTools = derive2 { name="RGISTools"; version="1.0.2"; sha256="0pildj5pmc34f58bv39gxl3p2g0cr32przdhjnss37kcdlcv5zlb"; depends=[curl fields httr mapview raster Rdpack rjson rvest sf sp stars tmap urltools XML xml2]; }; RGeckoboard = derive2 { name="RGeckoboard"; version="0.1-5"; sha256="0h7x3kdmlba9siwcnf313ajmz2jsmyhl7pndzs7qaqina3hkl46r"; depends=[httr jsonlite]; }; RGenData = derive2 { name="RGenData"; version="1.0"; sha256="124h2qvp0f6cil7zf4ln3n0jlqcfzdwbihzfaklk2lxxn7gq4mbi"; depends=[]; }; RGenetics = derive2 { name="RGenetics"; version="0.1"; sha256="0x5sspd67hh08qm62whlnnd838m0np29q3bfzgwp6j85lhil3jrx"; depends=[]; }; @@ -3413,7 +3496,7 @@ in with self; { RGoogleAnalytics = derive2 { name="RGoogleAnalytics"; version="0.1.6"; sha256="05wbcdksx5g6y7x4r1pvc9is3afxbpdxdbmc6b4jhn46rg4228z4"; depends=[digest httr lubridate]; }; RGoogleAnalyticsPremium = derive2 { name="RGoogleAnalyticsPremium"; version="0.1.1"; sha256="0d22pdd5kvnrspikfb66ny07pgx96rvykr0zi78rwn6g1symdb4q"; depends=[httr jsonlite lubridate]; }; RGoogleFit = derive2 { name="RGoogleFit"; version="0.4.0"; sha256="0k1vvl4l6pq37llpbq996rbghdfld7mz7bhzbpw393fmrkd45vyi"; depends=[bit64 httr jsonlite RCurl]; }; - RGraphics = derive2 { name="RGraphics"; version="3.0-1"; sha256="1xd0i0k8870r0g7g4nq0dwr8mda5g2v0k66lzhr4znwll20zgg52"; depends=[ggplot2 gridBase gridGraphics gridSVG grImport grImport2 lattice]; }; + RGraphics = derive2 { name="RGraphics"; version="3.0-2"; sha256="02gp2lqc5qzid81d28cqb7x88zr0ivxppy55a9q649whcd027071"; depends=[ggplot2 gridBase gridGraphics gridSVG grImport grImport2 lattice]; }; RGreenplum = derive2 { name="RGreenplum"; version="0.1.2"; sha256="1mc0zmmnb9306j2cjn1j71bp35ri8p35rw6rlmrqyxgpvlw09r3d"; depends=[DBI RPostgres]; }; RGtk2 = derive2 { name="RGtk2"; version="2.20.36"; sha256="1vzb3wklm2iwhvggalalccr06ngx6zgv3bxjb8c3rsg9va82bzyp"; depends=[]; }; RH2 = derive2 { name="RH2"; version="0.2.4"; sha256="14590l3a2znd56nrq1zfbfv7fgii4672qy1xfwiynrh3mjad217k"; depends=[chron rJava RJDBC]; }; @@ -3435,7 +3518,7 @@ in with self; { RInside = derive2 { name="RInside"; version="0.2.16"; sha256="03iabanmj5xkgq7r1n1rkmzjf2zz484637nmd1qg61ga53hsvr3s"; depends=[Rcpp]; }; RItools = derive2 { name="RItools"; version="0.1-17"; sha256="1shcvkgsyjk9jmpf7icj1zjlvmqa11scmymc8cycnffax604frbm"; depends=[abind SparseM survival svd xtable]; }; RJDBC = derive2 { name="RJDBC"; version="0.2-8"; sha256="1qfq1vjlxhg3hmb1169zkss7kng74jhjninqkfr3cca8x1fq9593"; depends=[DBI rJava]; }; - RJDemetra = derive2 { name="RJDemetra"; version="0.1.5"; sha256="16iri92h0smf2vqwr0za4698qidncmqb4fimbidizqr7205xa1cw"; depends=[rJava]; }; + RJDemetra = derive2 { name="RJDemetra"; version="0.1.6"; sha256="1s2kvncc35fp2qig781rsw8w1nc9xvlwbpyhb3xqydlsrh89rvqg"; depends=[rJava]; }; RJSDMX = derive2 { name="RJSDMX"; version="2.3-3"; sha256="02lbg82g4abng5vcn2g8ghvmg69q35my8smnbvd09yvha8hb49ps"; depends=[rJava zoo]; }; RJSONIO = derive2 { name="RJSONIO"; version="1.3-1.4"; sha256="141ijm9570mg1180isvi0jb9vd3b08s5gb9dl1wa5v0m3s9jq52l"; depends=[]; }; RJSplot = derive2 { name="RJSplot"; version="2.5"; sha256="0p2zqbq29pfjl703wqqjzgmif7yfzz7l8rzarjf5axkdy7w7fcyl"; depends=[]; }; @@ -3448,13 +3531,12 @@ in with self; { RKHSMetaMod = derive2 { name="RKHSMetaMod"; version="1.1"; sha256="1h8gqqfmlrzyj4n997yn13vqpaw2kwzl45gscy3fdhskzmyg0ss3"; depends=[Rcpp RcppEigen RcppGSL]; }; RKUM = derive2 { name="RKUM"; version="0.1.1"; sha256="1w0v6l61dm7xixnyywsc7xziixz7k9r1ja26zcy77nry5kn6v60q"; depends=[]; }; RKelly = derive2 { name="RKelly"; version="1.0"; sha256="0mkpc95j67rg2gcj2fc4w8kv4v31cpiyvh660y8kc2fjr5q4aj3l"; depends=[]; }; - RKlout = derive2 { name="RKlout"; version="1.0"; sha256="17mx099393b1m9dl3l5xjcpzmb9n3cpjghb90m9nidccxkhacmqf"; depends=[RCurl]; }; - RKorAPClient = derive2 { name="RKorAPClient"; version="0.5.7"; sha256="19sya8zajmpxl4yc9y9b6qmd816zxdlyymm8v6swykh4xlr3ghfg"; depends=[broom dplyr ggplot2 highcharter htmlwidgets httr jsonlite keyring lubridate magrittr plotly PTXQC purrr R_cache tibble tidyr]; }; + RKorAPClient = derive2 { name="RKorAPClient"; version="0.5.9"; sha256="17jpc54hj76n4dlzqdbbi99xylnvc9fb72gmz6in2vfw9lrix913"; depends=[broom dplyr ggplot2 highcharter htmlwidgets httr jsonlite keyring lubridate magrittr plotly PTXQC R_cache tibble tidyr]; }; RLRsim = derive2 { name="RLRsim"; version="3.1-6"; sha256="1wkkibr250frsbfq70m9jdrylxb492zibf5w03z6zis98pjffssp"; depends=[lme4 mgcv nlme Rcpp]; }; RLT = derive2 { name="RLT"; version="3.2.2"; sha256="1a8cip975z99g8ljng4y86wv1gf1xwg0sqnxz79wj6zxpw8fk37c"; depends=[]; }; RLeafAngle = derive2 { name="RLeafAngle"; version="1.0"; sha256="1anks22hn6qpac556p99kilkhc80h572dvcyz3wj1nqffdrhgrh3"; depends=[]; }; RLogicalOps = derive2 { name="RLogicalOps"; version="0.1"; sha256="1qyn80x3x3bb5wgzyzw6pxs8a6q26yq1fkmkz7f5wywsnrj8hzfj"; depends=[rstackdeque stringr]; }; - RLumModel = derive2 { name="RLumModel"; version="0.2.5"; sha256="1wwia6a3sg9ggy6ggayjiysxn2gwwyv7xd6lhrsfr229jxahsz3g"; depends=[deSolve Luminescence Rcpp RcppArmadillo]; }; + RLumCarlo = derive2 { name="RLumCarlo"; version="0.1.6"; sha256="0pprmsd20wqlwbyf9s26p8znpa3i7zj9rn9fhlhhca1zlh0m6ziw"; depends=[abind doParallel foreach khroma magrittr Rcpp RcppArmadillo scatterplot3d]; }; RLumShiny = derive2 { name="RLumShiny"; version="0.2.2"; sha256="0rwl555564ccw4pdzya88s3h3q30iq5dmi77141ji8ir91x4rz3g"; depends=[data_table DT googleVis knitr Luminescence RCarb readxl rhandsontable rmarkdown shiny shinydashboard shinyjs]; }; RM_weights = derive2 { name="RM.weights"; version="2.0"; sha256="1by1z7gwwx0jjhhvsjkr7f6m7n0x43bj080ah5275cja7xqr5nm6"; depends=[Hmisc psychotools]; }; RM2 = derive2 { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; }; @@ -3464,44 +3546,47 @@ in with self; { RMKdiscrete = derive2 { name="RMKdiscrete"; version="0.1"; sha256="0b4adw46sn98qmy4nxv5l5svcjrp5532x7slfhhgsskqx408lzjf"; depends=[]; }; RMOA = derive2 { name="RMOA"; version="1.0.1"; sha256="1ppbwqdfxzk1ayms0rqw22l0r8vkk8av39spwpq8avgl6vssw8c4"; depends=[rJava RMOAjars]; }; RMOAjars = derive2 { name="RMOAjars"; version="1.0.1"; sha256="0qzpwsbndn8fw9560z9h9w9ff9bx6xj7mr50683q1n3dpn5z637i"; depends=[rJava]; }; + RMPSH = derive2 { name="RMPSH"; version="1.1.1"; sha256="0jffp8942ydwain23kvy7q6avpxxsb77jj1mg4bq43fwgfc9nqjy"; depends=[Rcpp]; }; + RMPSS = derive2 { name="RMPSS"; version="1.1.1"; sha256="0577z4jmzdirc32ibsnc6gslqjni75w6a1vvybxksaf0lmc0mdz6"; depends=[Rcpp]; }; RMTL = derive2 { name="RMTL"; version="0.9"; sha256="08da67wvzmibziqhnlzh43sydaihk4rsq2k5hs6ih3jkkidrhlgv"; depends=[corpcor doParallel foreach MASS psych]; }; RMThreshold = derive2 { name="RMThreshold"; version="1.1"; sha256="0wkc42vcggib002ad6ch43h6avpdgl12szrrrfd2p0wl72cwn5n1"; depends=[Matrix png]; }; RMTstat = derive2 { name="RMTstat"; version="0.3"; sha256="1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"; depends=[]; }; - RMaCzek = derive2 { name="RMaCzek"; version="1.3.3"; sha256="1kn3h2gp08i8vq8304853bg5yydkdz7xlhqh2djn9r1iy69hhwg4"; depends=[GA seriation]; }; + RMaCzek = derive2 { name="RMaCzek"; version="1.3.4"; sha256="1pg19jx74zdslbffw04agr9fn72sm4ad38rlwgncm84l75m107mr"; depends=[GA seriation]; }; RMallow = derive2 { name="RMallow"; version="1.1"; sha256="1s6a3347739rfc8rrh2773b278gcbp8hf5j5psm61fz7bavy9gcj"; depends=[combinat]; }; - RMariaDB = derive2 { name="RMariaDB"; version="1.0.8"; sha256="1xcr5lg9da4a49dcqy3hhrpz5jn51dqa6dc50vmkq1nw372yv2iw"; depends=[BH bit64 DBI hms plogr Rcpp]; }; + RMariaDB = derive2 { name="RMariaDB"; version="1.0.9"; sha256="0gvs8k70jjy6pymc7l02c2p2inxpgphg5hsvwm2q834clr4xllxi"; depends=[BH bit64 DBI hms plogr Rcpp]; }; RMark = derive2 { name="RMark"; version="2.2.7"; sha256="0qxa383cagzqrnfc3izybb4lrg8z1r3nw1j5b7h4wkjwy0k3kczb"; depends=[coda matrixcalc msm]; }; RMediation = derive2 { name="RMediation"; version="1.1.4"; sha256="19idqx0hwljbcfrpqwa81k7cxbd8kv77ji8yi4n4p7517jbkzma6"; depends=[e1071 lavaan MASS]; }; RMixpanel = derive2 { name="RMixpanel"; version="0.7-1"; sha256="1xwmmfvky49n1l0w3kwcyaf2h4rhzz4k5icjwvpc90fqk8sxib6a"; depends=[base64enc jsonlite RCurl uuid]; }; - RMixtComp = derive2 { name="RMixtComp"; version="4.1.0"; sha256="00hygbbzbr5sdbhjzg0k4a7wj88dscmaln6bnxl6ywbzhdh902x4"; depends=[ggplot2 plotly RMixtCompIO RMixtCompUtilities scales]; }; - RMixtCompIO = derive2 { name="RMixtCompIO"; version="4.0.2"; sha256="03dlljykbn2jjnrys2s02vz091f09f92c7h53qxsd2r19l59ymnf"; depends=[BH doParallel foreach Rcpp RcppEigen]; }; - RMixtCompUtilities = derive2 { name="RMixtCompUtilities"; version="4.1.0"; sha256="0c6sjn6j0g6zc44w5knsgd6ga138gci54yilak8w0xrv5kr7mj3w"; depends=[ggplot2 plotly scales]; }; + RMixtComp = derive2 { name="RMixtComp"; version="4.1.2"; sha256="1a7digfxx0wx1p0fvyvhznffzd13lzf64c2y6gvrgj7wv2z8hg5k"; depends=[ggplot2 plotly RMixtCompIO RMixtCompUtilities scales]; }; + RMixtCompIO = derive2 { name="RMixtCompIO"; version="4.0.5"; sha256="14xr8ysg9avqhry19iykdg17h0hg8ms15isxcmcvn03q0cap8vim"; depends=[BH doParallel foreach Rcpp RcppEigen]; }; + RMixtCompUtilities = derive2 { name="RMixtCompUtilities"; version="4.1.2"; sha256="1wasg6d3yr5pwwmaflc1ph3vz6s3wgcqxlzrygfaqvaqgg8llk03"; depends=[ggplot2 plotly scales]; }; RMySQL = derive2 { name="RMySQL"; version="0.10.20"; sha256="0lv9m6zpm8dgv7yixr6xhw379vbq45d7n7gkrmjrppdj8vcih77i"; depends=[DBI]; }; - RNAseqNet = derive2 { name="RNAseqNet"; version="0.1.3"; sha256="1fn3q49dswi8hsyxkkgmq35gbdmnn72kzmfk89vd7gjvm67skvm6"; depends=[ggplot2 glmnet hot_deck igraph PoiClaClu]; }; + RNAseqNet = derive2 { name="RNAseqNet"; version="0.1.4"; sha256="16ab0p0378j4vvcazynffsgx1rq32llf1sz4h4pp5lrx820j6qvx"; depends=[ggplot2 glmnet hot_deck igraph PoiClaClu]; }; RNAsmc = derive2 { name="RNAsmc"; version="0.6.0"; sha256="0q4b24baabzx41zqygy6l2jnyzc4m7knmlnhra4hhc5f5cl5ab8r"; depends=[circlize RRNA]; }; RNAstructureModuleMiner = derive2 { name="RNAstructureModuleMiner"; version="0.1.0"; sha256="026r1h4z1jdfww0ay9iixa77ax6b19pgp589bbn77xg1vwjjlbsk"; depends=[RRNA]; }; RNCBIEUtilsLibs = derive2 { name="RNCBIEUtilsLibs"; version="0.9"; sha256="1h1ywx8wxy6n2rbpmjbqw4c0djz29pbncisd0mlbshj1fw226jba"; depends=[rJava]; }; - RNCEP = derive2 { name="RNCEP"; version="1.0.9"; sha256="1rbz8i4id5an95pcw6mbc30cjkj3pr5hc4hzfkcyhy5nnfxz784b"; depends=[abind fields maps RColorBrewer sp tgp]; }; + RNCEP = derive2 { name="RNCEP"; version="1.0.10"; sha256="19ja7pcp7ajwhqhqw92pdmvxzyjc4kw3943pllpx47s1zvi6dmci"; depends=[abind fields maps RColorBrewer sp tgp]; }; RND = derive2 { name="RND"; version="1.2"; sha256="1rl5apgw43c841z0lapi9z2jn979dvqh4x1qkqx1ad77zcq87c85"; depends=[]; }; RNGforGPD = derive2 { name="RNGforGPD"; version="1.0.2"; sha256="0z1jawq3342ffbv1jp7kfzll9pac5ff09qb3fd0vz564kqcvik0n"; depends=[corpcor Matrix mvtnorm VGAM]; }; RNHANES = derive2 { name="RNHANES"; version="1.1.0"; sha256="045ykpgxvc22blbp47ysbk6a6x4akjd39pjr114cr23s7f48g6h4"; depends=[dplyr foreign rvest survey xml2]; }; RNOmni = derive2 { name="RNOmni"; version="0.7.1"; sha256="0lzd820x9yw90ddzmxvd89pkqc3nrljlc6kz4cab50zj3s755ack"; depends=[abind foreach plyr Rcpp RcppEigen]; }; RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; }; RNaviCell = derive2 { name="RNaviCell"; version="0.2"; sha256="15k8hkagn5520fy7x672fy329s2v7l0x44s44f6v7ql9mmg4b635"; depends=[RCurl RJSONIO]; }; - RNeXML = derive2 { name="RNeXML"; version="2.4.3"; sha256="09d915hl8bfs3qg1lijh5kvs86rf0w25rh8p5p4mjnjdva9ir05z"; depends=[ape dplyr httr lazyeval plyr reshape2 stringi stringr tidyr uuid XML xml2]; }; + RNeXML = derive2 { name="RNeXML"; version="2.4.5"; sha256="1wsl4xq9w5bp3wk69dw57bg0qcw1vs6ajwya4p0w1r00ck5pwrib"; depends=[ape dplyr httr lazyeval plyr reshape2 stringi stringr tidyr uuid XML xml2]; }; RNentropy = derive2 { name="RNentropy"; version="1.2.2"; sha256="0chvmrvpyyghilwb63y6pd1zp94i5qhpv5w19x9nw0ypk86pp2dj"; depends=[]; }; - RNetCDF = derive2 { name="RNetCDF"; version="2.1-1"; sha256="0i670giq741d78ps6y98xbnqdybkv2svmdd6jbvcbpgdry6pfw89"; depends=[]; }; + RNetCDF = derive2 { name="RNetCDF"; version="2.3-1"; sha256="1ij4cfhfplky8yhikc5ghafk8812bp9v8fqf9kfp3bm2wip1jdvm"; depends=[]; }; RNetLogo = derive2 { name="RNetLogo"; version="1.0-4"; sha256="1z7jp454k197c0zbkn64zmf25wadkiznv3w2csgiz917cbx6xcn1"; depends=[igraph rJava]; }; - RNewsflow = derive2 { name="RNewsflow"; version="1.2.3"; sha256="0cbvcz2dgx3nvhvj73k6s901v5p5fy8zl4hx4r696cf14n60c0yb"; depends=[data_table igraph Matrix quanteda Rcpp RcppEigen RcppProgress scales stringi tm wordcloud]; }; + RNewsflow = derive2 { name="RNewsflow"; version="1.2.4"; sha256="1xbkmm7fvpn0ms0qcyn1k33k1gc462cxr1vr5mf5snqvgl836ykq"; depends=[data_table igraph Matrix quanteda Rcpp RcppEigen RcppProgress scales stringi tm wordcloud]; }; RNifti = derive2 { name="RNifti"; version="1.1.0"; sha256="1z8ninp3aq18w0slcfn8r2fp48cdz8l0k0namsrnvgyp8lzcpqpn"; depends=[Rcpp]; }; RNiftyReg = derive2 { name="RNiftyReg"; version="2.6.8"; sha256="19lij5zplw7jw65ykkjl85iqpfq3i6sia4wnq7fmkv1xlzwda2f4"; depends=[ore Rcpp RcppEigen RNifti]; }; ROAuth = derive2 { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[digest RCurl]; }; - ROCR = derive2 { name="ROCR"; version="1.0-7"; sha256="1jay8cm7lgq56i967vm5c2hgaxqkphfpip0gn941li3yhh7p3vz7"; depends=[gplots]; }; + ROCR = derive2 { name="ROCR"; version="1.0-11"; sha256="0amvvrkiflmr3qygrsgrsja4gaf2v6r6h6i2bgpsm8r069vmlf2p"; depends=[gplots]; }; ROCS = derive2 { name="ROCS"; version="1.3"; sha256="11vdf8701ap6ya7c7kx9jhvg7qfc6vkij3jridna6f4xj384grki"; depends=[poibin rgl]; }; - ROCit = derive2 { name="ROCit"; version="1.1.1"; sha256="1bip1zz5chm06pfikkscahph2clsaf9rhhpsla6vmvpfy0d8p070"; depends=[]; }; - ROCnReg = derive2 { name="ROCnReg"; version="1.0-1"; sha256="05rxb0hqk6w8xz8s52j0skc8p2b4fv8wdvvj8r77yimph1dlc13x"; depends=[lattice MASS Matrix moments nor1mix np pbivnorm spatstat]; }; + ROCit = derive2 { name="ROCit"; version="2.1.1"; sha256="0sd6ckh7k8aqwhzzp3qff6g7d03klbr0mbp403pib3823c8pqa55"; depends=[]; }; + ROCnReg = derive2 { name="ROCnReg"; version="1.0-2"; sha256="1wf8fsf5sy5c66c8hpiwl1pja1mva1f5vgp12020z1k7nyyf5ak6"; depends=[lattice MASS Matrix moments nor1mix np pbivnorm spatstat]; }; + ROCpsych = derive2 { name="ROCpsych"; version="1.3"; sha256="0fcrhhxmvrrchbswb94liahbgz5pfhs86fbj0vby7vnakrhngh7v"; depends=[pROC reportROC]; }; ROCwoGS = derive2 { name="ROCwoGS"; version="1.0"; sha256="029nramxwhzqim315g1vkg1zsszzkic28w6ahwg9n7bk9d08adzk"; depends=[]; }; - RODBC = derive2 { name="RODBC"; version="1.3-16"; sha256="0fcnszrkk7llz26wccs97glddw793i0f9bd7rwxrld24vn1lng92"; depends=[]; }; + RODBC = derive2 { name="RODBC"; version="1.3-17"; sha256="1xq4lzx1a09lmnd2lwj5z099z3pfg3r7y2da7rf4sd2wyqswi7s6"; depends=[]; }; RODBCDBI = derive2 { name="RODBCDBI"; version="0.1.1"; sha256="0jkcc1lm8drsx1pkfj5h6rlbr98cgpvbf9ndzdwr048f3s8gd26i"; depends=[DBI RODBC]; }; RODM = derive2 { name="RODM"; version="1.1"; sha256="0cyi2y3lsw77gqxmawla5jlm4vnhsagh3ykdgb6izxslc4j2fszx"; depends=[RODBC]; }; ROI = derive2 { name="ROI"; version="0.3-3"; sha256="06d9cqa7g5n10cynkkmy42ilzs7jj2lfz9snimis6ipgkm5n0xr9"; depends=[registry slam]; }; @@ -3516,9 +3601,9 @@ in with self; { ROI_plugin_glpk = derive2 { name="ROI.plugin.glpk"; version="0.3-0"; sha256="1a1vag47lfhiqmplrbkp95k36angpi9nvh0jd4cgy5y2416w22hn"; depends=[Rglpk ROI]; }; ROI_plugin_lpsolve = derive2 { name="ROI.plugin.lpsolve"; version="0.3-3"; sha256="19iir79dg9vb2dlii9a9j9zn5clawzddypdxdwj3vmqh66yk8n5a"; depends=[lpSolveAPI ROI]; }; ROI_plugin_msbinlp = derive2 { name="ROI.plugin.msbinlp"; version="0.3-0"; sha256="00zvjqq2sj7iaymc0lrf5lmqfbqilwh8llmq841lvsmbps45w41k"; depends=[ROI slam]; }; - ROI_plugin_neos = derive2 { name="ROI.plugin.neos"; version="0.3-1"; sha256="02apdbw5b0fknmm798g7nrfs25yjiyqza5b2cd4b6vvj2bjnwpsd"; depends=[ROI xml2 xmlrpc2]; }; + ROI_plugin_neos = derive2 { name="ROI.plugin.neos"; version="0.3-2"; sha256="17s06a9b2adz3m1lh0javw8dfi7gpssnkgalla8693pb38gazbm0"; depends=[ROI xml2 xmlrpc2]; }; ROI_plugin_nloptr = derive2 { name="ROI.plugin.nloptr"; version="0.3-3"; sha256="0ls241xahmd77q2s02mpzr1i10nq5vqgic5j786y9q00f6c3lxyd"; depends=[nloptr ROI]; }; - ROI_plugin_optimx = derive2 { name="ROI.plugin.optimx"; version="0.3-2"; sha256="13dfczn6dl4d1sx15davn5f4vcri7lk2zzh8ib28268lbwh9ma2s"; depends=[optimx ROI]; }; + ROI_plugin_optimx = derive2 { name="ROI.plugin.optimx"; version="0.3-3"; sha256="0kqzihx655jxw194xrx5qkdp4pls5wqi479pilw5pnkfvzl3sdgp"; depends=[optimx ROI]; }; ROI_plugin_qpoases = derive2 { name="ROI.plugin.qpoases"; version="0.3-3"; sha256="132zr4nx220697j2x1vm4sl1wklbrnh549zh5gb0zn7q206r56r4"; depends=[checkmate Rcpp ROI slam]; }; ROI_plugin_quadprog = derive2 { name="ROI.plugin.quadprog"; version="0.2-5"; sha256="1c4fd16kgg60gfs52xc64ii4kzl8fb8qz3rpy69d08avb4q6grir"; depends=[quadprog ROI slam]; }; ROI_plugin_scs = derive2 { name="ROI.plugin.scs"; version="0.3-2"; sha256="0g48awvbsnmdlviksyc57piqvhwfx63iq68ymyrgfxfwkjrk4fwl"; depends=[ROI scs slam]; }; @@ -3528,7 +3613,7 @@ in with self; { ROP = derive2 { name="ROP"; version="1.0"; sha256="12gh83r3hp1qdmw3p5rr1wfhsh90pirx67q456gl9ai6zgd8nkq8"; depends=[ROCR]; }; ROSE = derive2 { name="ROSE"; version="0.0-3"; sha256="12b9grh3rgaa07blbnxy8nvy5gvpd45m43bfqb3m4k3d0655jpk2"; depends=[]; }; ROlogit = derive2 { name="ROlogit"; version="0.1.2"; sha256="09j9c24f7plzpnnhpmzdi4gapb7w1377ksjwk6i2xpyr4bfsrr5k"; depends=[evd survival]; }; - ROpenCVLite = derive2 { name="ROpenCVLite"; version="0.3.412"; sha256="04nliid0gg0q6yk5w5xk79w28ckkjwi5w0c0k75b8291gb43wj3s"; depends=[pkgbuild]; }; + ROpenCVLite = derive2 { name="ROpenCVLite"; version="4.30.2"; sha256="1y8hcndm6sk9pg39jfawp14hhhfa8pbdpnari00spl6ixlw7pjjw"; depends=[pkgbuild]; }; ROpenDota = derive2 { name="ROpenDota"; version="0.1.2"; sha256="17s73yj2w5hlpy09ad83m4s2d9shg5h4zg64wvbp1ivyvpp7l308"; depends=[jsonlite RCurl]; }; ROpenFIGI = derive2 { name="ROpenFIGI"; version="0.2.8"; sha256="0fvd25vsqkgi3jv4s2lnfag5qksyzyb48d7rhfw6z8piz37n4xaj"; depends=[httr jsonlite]; }; ROpenWeatherMap = derive2 { name="ROpenWeatherMap"; version="1.1"; sha256="0h1yw93v06bx8svhghh1fsrf837qax9896klh64b06djpgg9ngb9"; depends=[httr jsonlite RCurl]; }; @@ -3536,50 +3621,50 @@ in with self; { ROptEstOld = derive2 { name="ROptEstOld"; version="1.2.0"; sha256="08njyxb8bnjb9nas3szqvqkfv83lc0187b7biis2nl2rgq6rljzy"; depends=[distr distrEx evd RandVar]; }; ROptRegTS = derive2 { name="ROptRegTS"; version="1.2.0"; sha256="1wy54kjrpfvj2k9ndmq27zzgx6aygh85f7c83g7gn8d5b2y91qy4"; depends=[distr distrEx RandVar ROptEstOld]; }; ROptSpace = derive2 { name="ROptSpace"; version="0.2.2"; sha256="09crzp3anw9p9fknw9gv8kzk1gmmdw0hbw1fa2r8i6601xi81ap4"; depends=[Rcpp RcppArmadillo Rdpack]; }; - ROptimizely = derive2 { name="ROptimizely"; version="0.2.0"; sha256="059zfn6y687h989wryvpqwgnp9njrrr4ys0gf1ql4pw85b2c50dy"; depends=[httr jsonlite]; }; ROracle = derive2 { name="ROracle"; version="1.3-1"; sha256="07zqzwaq5iqkjcmns2ahl1l71xjlznialb3dbyl4lwsh3p3fhf2n"; depends=[DBI]; }; RPANDA = derive2 { name="RPANDA"; version="1.8"; sha256="0k9k3zc68kr17jd5r0m6jwmfhf43k5r44h4kqa6kdpd03h60m1rh"; depends=[ape cluster coda corpcor deSolve fields fpc geiger glassoFast igraph Matrix mvMORPH mvtnorm phytools picante pracma pspline pvclust Rmpfr TESS]; }; RPCLR = derive2 { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; }; RPEClust = derive2 { name="RPEClust"; version="0.1.0"; sha256="1ysw45335lrxmj3j17xyvgz76p00v80f2m7wxfndh91wklqxzm8r"; depends=[clue clusteval mclust]; }; RPEGLMEN = derive2 { name="RPEGLMEN"; version="1.0.1"; sha256="1bcci0ih71bxdrwdz336c5wx47d094nczazy8mv3v41vivrk4jkh"; depends=[PerformanceAnalytics Rcpp RcppEigen RPEIF]; }; RPEIF = derive2 { name="RPEIF"; version="1.0.8"; sha256="0v8kgwzgn1sqs0rgb0mrvzxy1wnk07bm7s4nyz60xcamsj33laj0"; depends=[PerformanceAnalytics xts zoo]; }; - RPESE = derive2 { name="RPESE"; version="1.0.3"; sha256="0a9nq60jg2bhj5cbbgkpz0zisqwrv7cgifbiampx2y6sfrkmhbjg"; depends=[boot PerformanceAnalytics RPEGLMEN RPEIF sandwich xts zoo]; }; - RPEXE_RPEXT = derive2 { name="RPEXE.RPEXT"; version="0.0.1"; sha256="0m5ml8ywxrf66mjz6m3xp1lajd7wdq9g7xsaln8n7ykq7h5615fc"; depends=[]; }; + RPESE = derive2 { name="RPESE"; version="1.0.5"; sha256="0x5lf3xkxmwhilvay1qkklpdbqi1m78z0540mpwnpqwkv7xl1l80"; depends=[boot PerformanceAnalytics RPEGLMEN RPEIF sandwich xts zoo]; }; + RPEXE_RPEXT = derive2 { name="RPEXE.RPEXT"; version="0.0.2"; sha256="1dwblpfm0s4axiggwh4lbz5k1dz7i0d1nqzl70kxj5gnajm7gn1k"; depends=[]; }; RPEnsemble = derive2 { name="RPEnsemble"; version="0.4"; sha256="0y9g22swcz0m5jbzi87ahxw27fb3jlf3iwvxb73kkzixqlvksw9y"; depends=[class MASS]; }; RPMG = derive2 { name="RPMG"; version="2.2-3"; sha256="1di2bcf58z6gc3xknzx35znsjsy1714swvxkdhlq1ljidbdbmmbl"; depends=[]; }; RPMM = derive2 { name="RPMM"; version="1.25"; sha256="1j48dh434wfhfzka0l21w6f73qlwfm70r9gdddhn504i2d5m4jph"; depends=[cluster]; }; RPPairwiseDesign = derive2 { name="RPPairwiseDesign"; version="1.0"; sha256="0k2vh698rhs5a0b5vhyvrnnwqnagdzs591zx6hn9vbmm8rm4y1dm"; depends=[]; }; - RPPanalyzer = derive2 { name="RPPanalyzer"; version="1.4.5"; sha256="0cf4mb7mjp7x3k7083c8n8fjbvrmcgq359wh6pdyj817mgkanqzv"; depends=[Biobase gam ggplot2 gplots Hmisc lattice limma quantreg]; }; + RPPanalyzer = derive2 { name="RPPanalyzer"; version="1.4.6"; sha256="0ifspa7kiskanqkpi5iw6finfyslvbsirplf2a2l7xgvy96vz9la"; depends=[Biobase gam ggplot2 gplots Hmisc lattice limma quantreg]; }; RPS = derive2 { name="RPS"; version="1.0.1"; sha256="16n6wknw2m56kwi6rswgxjwjqblhaz5gyw94f96a7l6navqnvlp4"; depends=[ape geomorph Gmedian igraph MASS matlab]; }; RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.6-2"; sha256="1mdhw5821v2h7hpa53v10wz53k4i90r0vb6a3dia5gq8f9j1h088"; depends=[DBI]; }; RPostgres = derive2 { name="RPostgres"; version="1.2.0"; sha256="16fjwaj1qvr1i9naq19jg2z3dqssi3pp4wwviyqlkj1mmbyh28zx"; depends=[BH bit64 blob DBI hms plogr Rcpp withr]; }; RPresto = derive2 { name="RPresto"; version="1.3.4"; sha256="17hwq76vzr27prwisfxahs1ix9grldknaywnq3v2a3s2x79v8vbv"; depends=[DBI httr jsonlite openssl Rcpp stringi]; }; - RProbSup = derive2 { name="RProbSup"; version="2.1"; sha256="0lmv4x235xiykc8jfnp15l4yypm99yz6spsnaxacp49y2aw23jpy"; depends=[]; }; + RProbSup = derive2 { name="RProbSup"; version="2.2"; sha256="0phf3hhppgwm9m5wpj7r2yi7qmppcd553pc9hvqx7y9j4lg8imlf"; depends=[]; }; RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.17"; sha256="0krbxalcfg47cmrwfajgbhmn6rs687ranaiq5j0daw7a1k4qdfd8"; depends=[Rcpp RCurl]; }; + RPscoring = derive2 { name="RPscoring"; version="0.1.0"; sha256="063w83k9krwv3wvw2iq8bqkhjaj26as14d9g99l8jxfc02ljv1rr"; depends=[]; }; RPtests = derive2 { name="RPtests"; version="0.1.4"; sha256="1r30pslbjq3dip41la81jlin2vhxdmayg902x9ryjy554awfgh7j"; depends=[glmnet randomForest Rcpp]; }; RPublica = derive2 { name="RPublica"; version="0.1.3"; sha256="1w2pn1g44a00ls8kkzj53a739pq6vzp38px2k0yh10rlzimmb21l"; depends=[curl httr jsonlite]; }; RPushbullet = derive2 { name="RPushbullet"; version="0.3.3"; sha256="0acydm5xc1j6yjmjipfrg7pvc6h0jwihrg1rx97qwddds2xakkxy"; depends=[curl jsonlite]; }; RPyGeo = derive2 { name="RPyGeo"; version="1.0.0"; sha256="1alqgx6blqqwxm76w05g82kc2icx8nvjw7qkdz73gf9ckgza5bb3"; depends=[magrittr purrr raster reticulate rmarkdown sf stringr]; }; - RQDA = derive2 { name="RQDA"; version="0.3-1"; sha256="1kqax4m4n5h52gi0jaq5cvdh1dgl0bvn420dbws9h5vrabbw1c1w"; depends=[DBI gWidgets gWidgetsRGtk2 igraph RGtk2 RSQLite]; }; RQEntangle = derive2 { name="RQEntangle"; version="0.1.3"; sha256="178haddk8nnscy2vym3k2a3ca9lf6nl7rpjja8lxqdjninvhvwb2"; depends=[iterators itertools]; }; RQuantLib = derive2 { name="RQuantLib"; version="0.4.12"; sha256="1bmjgsdwivrvdysba4hq60xpp7xg1c0p1p05mdm0338zvzix5kb8"; depends=[Rcpp zoo]; }; RRF = derive2 { name="RRF"; version="1.9.1"; sha256="135adnf7cfs8gddmmmgmzarjzg0qfrd7l67367yhy2b1k0s5ng1w"; depends=[]; }; RRI = derive2 { name="RRI"; version="1.1"; sha256="0msdc5j5vx4snl8r3q5nn0mw2i80jds5pjykhmigcrx6jzg6h6i7"; depends=[Rcpp RcppArmadillo]; }; RRNA = derive2 { name="RRNA"; version="1.0"; sha256="14rcqh95ygybci8hb8ays8ikb22g3850s9f3sgx3r4f0ky52dcba"; depends=[]; }; - RRPP = derive2 { name="RRPP"; version="0.5.2"; sha256="0j31drphisckab9v93z6spdj9jgd0wx9dkbd2b22ff5la6bvil7k"; depends=[]; }; - RRRR = derive2 { name="RRRR"; version="1.0.0"; sha256="1xia8izpxlacas2qa508wy7d65b461cqqkkv78jbp85h0dzxa0k0"; depends=[expm ggplot2 magrittr matrixcalc mvtnorm]; }; + RRPP = derive2 { name="RRPP"; version="0.6.1"; sha256="0sm1kp9z1l59r0xq13hv9qaxmrvdz4cg9cl5n46r3yj03paxscpp"; depends=[ape]; }; + RRRR = derive2 { name="RRRR"; version="1.1.0"; sha256="0h5r668qn8hp4j4zhxhn4b3lqm138n6kc1c7vf95hmbh4ah6wzf7"; depends=[expm ggplot2 magrittr matrixcalc mvtnorm]; }; RRTCS = derive2 { name="RRTCS"; version="0.0.3"; sha256="1riz1gjx3c0pf17xwybizb94nm5zgmfsnv6np3afvw831mb1x3l9"; depends=[sampling samplingVarEst]; }; RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; }; RRedshiftSQL = derive2 { name="RRedshiftSQL"; version="0.1.2"; sha256="03jbml8d19hcg6achnyc4hcnl5j10yvsx59j80r46zyn0flsnizq"; depends=[DBI RPostgreSQL]; }; - RRphylo = derive2 { name="RRphylo"; version="2.4.4"; sha256="1wmd1hm51v2289cfglvx245frjs2c2908znfayvvd2gfhfj6r7rf"; depends=[ape binr car cluster ddpcr doParallel emmeans foreach geiger geomorph lmtest nlme outliers phangorn phytools picante plotrix R_utils RColorBrewer rlist scales smatr vegan]; }; + RRphylo = derive2 { name="RRphylo"; version="2.4.7"; sha256="037d96fvij08j7dwkm3f83nh9v02yh5qqijgqz51hkivfmmy2lgf"; depends=[ape doParallel emmeans foreach geiger phytools]; }; RRreg = derive2 { name="RRreg"; version="0.7.1"; sha256="1mzc9ga5jdh3cf95bxbfy6kdxvqcca74v4hszb63jalzp8w624r9"; depends=[doParallel foreach lme4]; }; - RSA = derive2 { name="RSA"; version="0.9.13"; sha256="19xkziixmwwmf7fxkzbsmp9bjii6mznnxyzghbw64kx0kq8bc1ll"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer tkrplot]; }; + RSA = derive2 { name="RSA"; version="0.10.1"; sha256="1r0hdmh72l3p6djdgj9p8m234b3n6018k1kdsch007fxwbjixnvf"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer tkrplot]; }; RSADBE = derive2 { name="RSADBE"; version="1.0"; sha256="1nzpm88rrzavk0n8iflsx8r3s1xcry15n80zqdw6jijjycz10w1q"; depends=[]; }; RSAGA = derive2 { name="RSAGA"; version="1.3.0"; sha256="1y1zhy2bxkfsv8vmnxjdg9i5rqkvs32kw8h5z1mclv953srgkpn9"; depends=[gstat magrittr plyr rgdal shapefiles stringr]; }; RSAlgaeR = derive2 { name="RSAlgaeR"; version="1.0.0"; sha256="1hp0v2vkj9ixiv541d53kyl0ph3jsdc5w98r81gv5ck5ixrp6bxp"; depends=[cvTools ggplot2 hydroGOF lubridate mblm plyr]; }; - RSCABS = derive2 { name="RSCABS"; version="0.9.4"; sha256="0zknwd07z933c405n14l7mwl4l697g5sfvw19244yv4fs7f6k5cg"; depends=[gWidgets gWidgetsRGtk2 R2HTML RGtk2]; }; + RSBJson = derive2 { name="RSBJson"; version="1.1.2"; sha256="1bzy0pgj6kg447xnnjj643hk8gyzzaaliiw0z98r19959bqbvgq3"; depends=[jsonlite]; }; + RSCABS = derive2 { name="RSCABS"; version="0.9.5"; sha256="193wbf1v18xv098i6abpglb239788d9gjzqbn8p3aai0la6y1pk3"; depends=[gWidgets2 gWidgets2RGtk2 R2HTML RGtk2]; }; RSCAT = derive2 { name="RSCAT"; version="1.1.0"; sha256="1sh80zlkwma88kssrlwvb6kpqs2dmhfzkck59fgp0xxgxa3vpram"; depends=[ggplot2 gridExtra Metrics rJava shiny shinycssloaders shinyjs]; }; - RSDA = derive2 { name="RSDA"; version="3.0.3"; sha256="0335g7m97wx4c8aam19z5qn9s9kgjy67s0wdgcjfjm440pxk2l3r"; depends=[dplyr FactoMineR forcats ggplot2 ggpolypath glmnet labelled magrittr nloptr princurve purrr randomcoloR reshape RJSONIO rlang scales sqldf stringr tibble tidyselect vctrs XML]; }; + RSDA = derive2 { name="RSDA"; version="3.0.4"; sha256="1ps4q3xcyzv5wnwnpwmvvx1gf3ry02rd480gifbfg39km8qwhvgz"; depends=[dplyr FactoMineR forcats ggplot2 ggpolypath glmnet labelled magrittr nloptr princurve purrr randomcoloR reshape RJSONIO rlang scales sqldf stringr tibble tidyselect vctrs XML]; }; RSE = derive2 { name="RSE"; version="1.3"; sha256="1dvmj1zwkbp1dj9r8kcvbd8rpknfwfdqaqc5gfl82bh823w72099"; depends=[]; }; RSEIS = derive2 { name="RSEIS"; version="3.9-0"; sha256="16jmakdq6rkyw3cm1ilnaw3ycsg12544ml9gla7y8mgpbglxsn6i"; depends=[RPMG Rwave]; }; RSGHB = derive2 { name="RSGHB"; version="1.2.2"; sha256="16s9iahbcdqykavm5cq8n76hlpfqlljl17xwh0vrz5ac7z4z3rdz"; depends=[MCMCpack]; }; @@ -3588,7 +3673,7 @@ in with self; { RSNNS = derive2 { name="RSNNS"; version="0.4-12"; sha256="1fa32wrhv3q0sdgrcrqrazvvylbn83d75bw8d0ncjfspf7dgx3di"; depends=[Rcpp]; }; RSNPset = derive2 { name="RSNPset"; version="0.5.3"; sha256="1llx6anwkl4as0hdyvmsrlg9z8mkn9p1qxgs6kqs39w87gyx0j36"; depends=[doRNG fastmatch foreach qvalue Rcpp RcppEigen]; }; RSPS = derive2 { name="RSPS"; version="1.0"; sha256="0ynxhgnxsf27qm8r5d9lyd59zksnc3kvx35hy25vff8j3bg7fqgi"; depends=[gridExtra lattice plyr]; }; - RSQL = derive2 { name="RSQL"; version="0.1.1"; sha256="108jv8p0q4cmpjm701k6c2i5vcyaq9xn6wg97rih639gmdaqn28s"; depends=[DBI lgr R6 RSQLite]; }; + RSQL = derive2 { name="RSQL"; version="0.1.4"; sha256="0zda6cgsx1bd3xw2r9flsphbkrgma95qqv5vz70f234y9gkmc6v3"; depends=[DBI knitr lgr R6 RSQLite]; }; RSQLite = derive2 { name="RSQLite"; version="2.2.0"; sha256="1m38sj8rwbf3p2lhqabcp7c7djk7s9ng37cz39yxk706v9pi4380"; depends=[BH bit64 blob DBI memoise pkgconfig plogr Rcpp]; }; RSSL = derive2 { name="RSSL"; version="0.9.1"; sha256="0845azknk90ix8xgcj18mdn7jbicalid4fcqyxzp747qswy4hh98"; depends=[cluster dplyr ggplot2 kernlab MASS Matrix quadprog Rcpp RcppArmadillo reshape2 scales tidyr]; }; RSSOP = derive2 { name="RSSOP"; version="1.1"; sha256="119xrxpaf68qdb2kj2pbaja6im2nbxsgibb1bnlpnc3fcxkmqcsf"; depends=[]; }; @@ -3607,45 +3692,47 @@ in with self; { RSocrata = derive2 { name="RSocrata"; version="1.7.10-6"; sha256="1pzdpy1mifr6hhhj7pq8l5jl8dsn6270ibm6pnmc66psh0xr2zsa"; depends=[httr jsonlite mime plyr]; }; RSpectra = derive2 { name="RSpectra"; version="0.16-0"; sha256="1ab45as2ysjrvkhvmx7y3nbhd0y1w4j9k2a789lcd973zz4wzwda"; depends=[Matrix Rcpp RcppEigen]; }; RSpincalc = derive2 { name="RSpincalc"; version="1.0.2"; sha256="09fjwfz1bzpbca1bpzxj18ki8wh9mrr5h6k75sc97cyhlixqd37s"; depends=[]; }; + RSqlParser = derive2 { name="RSqlParser"; version="1.5"; sha256="0q5wa7bq7m94xx8hcf9p29v5vvkrqzygs3v6yy5xl6jgvshvscvi"; depends=[stringi stringr]; }; RStata = derive2 { name="RStata"; version="1.1.1"; sha256="1wx6cz4567xkfplybmbwmw25snhlaxn48yi620cv6p5xqv458yp7"; depends=[foreign]; }; RStoolbox = derive2 { name="RStoolbox"; version="0.2.6"; sha256="1pq0vxq53x8f0358qfq1rakb59cdfi4micp7hjb9fbz95q9am8mj"; depends=[caret codetools doParallel foreach geosphere ggplot2 raster Rcpp RcppArmadillo reshape2 rgdal rgeos sp XML]; }; RStorm = derive2 { name="RStorm"; version="1.0"; sha256="1n2kiy9b8w6rnv2zmzbl22grwibf619hadf2cjq1ch7rmbr7qb65"; depends=[plyr]; }; RStripe = derive2 { name="RStripe"; version="0.1"; sha256="0vp7zsd5xm8rf7196fivb76kkmxfx3gawxlyjhn9xqv92vawivra"; depends=[httr jsonlite RCurl]; }; RSuite = derive2 { name="RSuite"; version="0.37-253"; sha256="18ddhv5wbwp9qx33zskf11q8c9grdyvm93y8lxd5jy245x5hgzph"; depends=[devtools git2r httr jsonlite logging processx roxygen2]; }; + RSurveillance = derive2 { name="RSurveillance"; version="0.2.1"; sha256="02jbm9xl2jg9cgq53i1cvj1rivhprgd07k1rxsayzrskvbmvyjpd"; depends=[epiR epitools mc2d]; }; RSurvey = derive2 { name="RSurvey"; version="0.9.3"; sha256="0yk969jdvpgv01zbmk4zyxcmrbdizh37bddj1k128ndyf191z37x"; depends=[colorspace inlmisc MBA raster rgdal rgeos sp]; }; RSvgDevice = derive2 { name="RSvgDevice"; version="0.6.4.4"; sha256="0vplac5jzg6bmvbpmj4nhiiimsr9jlbk8mzyifnnndk9iyf2lcmz"; depends=[]; }; RSwissMaps = derive2 { name="RSwissMaps"; version="0.1.0.1"; sha256="16sdd0115793yj74i9m64yfxxn3gkk4nvb0qk2w8j7jjbqhflis0"; depends=[downloader dplyr ggplot2]; }; - RTCC = derive2 { name="RTCC"; version="0.1.0"; sha256="11z5db4y7nfacp1xgmxa1dsain9sz4634ydnpa4rngcw2q3mx68p"; depends=[matrixStats Rcpp testthat vegan]; }; + RTCC = derive2 { name="RTCC"; version="0.1.1"; sha256="0bnm0qwikbbpq3i5q5fwmsgi8fn7w0xk993ngpiqbrf5my3h93kc"; depends=[matrixStats Rcpp testthat vegan]; }; RTConnect = derive2 { name="RTConnect"; version="0.1.4"; sha256="1000jmmqzyhl6vh1ii75jdh88s9inaz52gvfwcin2k2zr7bi91ba"; depends=[]; }; - RTD = derive2 { name="RTD"; version="0.1.1"; sha256="1f36wn9f7wjadvll234m97wqfj4adpvif4x0ywn4wfk91cwa5zib"; depends=[httr jsonlite openssl readr urltools]; }; + RTD = derive2 { name="RTD"; version="0.4.1"; sha256="0zsv62hx1y9q5a6rd8ri91ff64671b84jr3f88h0q4yni2mribhr"; depends=[dplyr httr jsonlite purrr RcppMsgPack readr urltools uuid]; }; RTDE = derive2 { name="RTDE"; version="0.2-1"; sha256="1dkv0g760384jmyypffl5kbnsancjx272j91ffpgmg3lmsy8nhqq"; depends=[]; }; - RTL = derive2 { name="RTL"; version="0.1.1"; sha256="1p5i9khwa470hc9bhxlxqh8w5vp73jcsr45mrhwpcyz3i2dlzdzr"; depends=[dplyr EIAdata fabletools feasts fGarch fitdistrplus forecast ggplot2 httr lubridate magrittr PerformanceAnalytics plotly purrr Quandl quantmod readr stringr tibble tibbletime tidyquant tidyr timetk tsibble xts zoo]; }; + RTL = derive2 { name="RTL"; version="0.1.3"; sha256="0sswm0x8m7v27hiz3cy9d6w2qglww5z681iafrx246s0qagl9xzi"; depends=[dplyr fabletools feasts fGarch fitdistrplus forecast ggplot2 httr jsonlite lubridate magrittr PerformanceAnalytics plotly purrr Quandl quantmod readr sp stringr tibble tibbletime tidyquant tidyr timetk tsibble xts zoo]; }; RTOMO = derive2 { name="RTOMO"; version="1.1-6"; sha256="03jb96ahzgp662vj2v65giv8ss61vad5w26kvq8hg9q06z879jza"; depends=[GEOmap RPMG RSEIS splancs]; }; RTaxometrics = derive2 { name="RTaxometrics"; version="2.3"; sha256="02446y86g21i37ycavg0xc1ggxk0k93d38n71fis9fav06lywxx3"; depends=[]; }; + RTextTools = derive2 { name="RTextTools"; version="1.4.3"; sha256="0fxjviqc36k06rn8xzbi8ylzzj9zgf3zsp6xv0kssakss1a45lzz"; depends=[caTools e1071 glmnet ipred nnet randomForest SparseM tau tm tree]; }; RTextureMetrics = derive2 { name="RTextureMetrics"; version="1.1"; sha256="0d0mvpmcpd62cvqlajrqp32lnvpflyf9bqvdzly2v8v1kb8274fc"; depends=[]; }; - RTransProb = derive2 { name="RTransProb"; version="0.3.3"; sha256="1fl8ag7aizj7k7j5ypx632qa98jp3wp8z3mp5z490n1277ajzrkb"; depends=[caret chron e1071 expm MASS Matrix matrixStats neuralnet nnet pracma Rcpp RcppArmadillo zoo]; }; RTransferEntropy = derive2 { name="RTransferEntropy"; version="0.2.12"; sha256="066wyama0gk81l6kc0n31cmf007i1975i7hzvf46qbldvhsc52mc"; depends=[future future_apply Rcpp]; }; RTriangle = derive2 { name="RTriangle"; version="1.6-0.10"; sha256="07ya95gmv53i2argqwgad6wd4sslql2wl1rkvsmgsvmhsb4wp9hd"; depends=[]; }; RUnit = derive2 { name="RUnit"; version="0.4.32"; sha256="1wc1gwb7yw7phf8b0gkig6c23klya3ax11c6i4s0f049k42r78r3"; depends=[]; }; - RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-75"; sha256="14wgxly7lc301i7avby3sy1prjr0bfyvky1krn89j217mz12qk1p"; depends=[ade4 boot car FactoMineR lme4 MASS mixOmics nnet pls pspearman vegan]; }; + RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-77"; sha256="0iwwqfdcr2l1ax5397j77cj1p6kvmg4005rfb7bhsii4i9w0mwf0"; depends=[ade4 boot car FactoMineR lme4 MASS mixOmics nnet pls pspearman vegan]; }; RVFam = derive2 { name="RVFam"; version="1.1"; sha256="0gw8rgq11zndnqmay6y3y5rmmljvwhxzm2pqa90vs5413dnchq92"; depends=[coxme kinship2 lme4 MASS Matrix survival]; }; RVenn = derive2 { name="RVenn"; version="1.1.0"; sha256="016m00xv59lkwm2is32v5nr4lw5a1ymdnz34r3ffflcv9bfrc6n4"; depends=[ggforce ggplot2 magrittr pheatmap purrr rlang vegan]; }; RVerbalExpressions = derive2 { name="RVerbalExpressions"; version="0.1.0"; sha256="1p9wmpgqwnz95sr8km8y6kqax8fcz6sqg54wfdx44kiqkf1ybdsp"; depends=[magrittr]; }; RVideoPoker = derive2 { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap rpanel tkrplot]; }; RViennaCL = derive2 { name="RViennaCL"; version="1.7.1.8"; sha256="0lh23g8zyd50p6hnl4dfmzrsg48y74g2h7dism9j2n1pfd9p9k5d"; depends=[]; }; - RVowpalWabbit = derive2 { name="RVowpalWabbit"; version="0.0.13"; sha256="106lr6iz28gscczs18759zaki7dnxy1873swiakimfqmwpw9dp9n"; depends=[Rcpp]; }; + RVowpalWabbit = derive2 { name="RVowpalWabbit"; version="0.0.15"; sha256="12bv6v4if17z0jfj8g885ixfmyfwqsqzlspgvz152jksiza7qvpd"; depends=[Rcpp]; }; RVtests = derive2 { name="RVtests"; version="1.2"; sha256="0k7w6ml981zvr5bix197qw4kaf7rz5jqnwqlxf7aryxbm39gk16c"; depends=[glmnet pls spls]; }; RWBP = derive2 { name="RWBP"; version="1.0"; sha256="104vr2cdk185hh4zn3vmqvb14p1q8ifk11wdgvk7fli1m1zxxwdd"; depends=[igraph lsa RANN SnowballC]; }; RWDataPlyr = derive2 { name="RWDataPlyr"; version="0.6.4"; sha256="1jjra885339n6kpqz28rn9byy4md4s0k47m6ll4a6srd4hsf3ni3"; depends=[data_table dplyr feather Rcpp tibble tidyr xts zoo]; }; RWebLogo = derive2 { name="RWebLogo"; version="1.0.3"; sha256="1n65mlnr163ywjnyyngnigbj0wpgkr38c3nx8hw5r8mwjnf3d617"; depends=[findpython]; }; RWeka = derive2 { name="RWeka"; version="0.4-42"; sha256="0111n0hr3a2gjd2pv5vlh8mian6k86cp0xrw0yyh6ijxhwl31rc4"; depends=[rJava RWekajars]; }; RWekajars = derive2 { name="RWekajars"; version="3.9.3-2"; sha256="06nsylv65z9hxym1b6qnwllh306bq5phsgr0qn4nyr5im8cv1rhn"; depends=[rJava]; }; - RWiener = derive2 { name="RWiener"; version="1.3-2"; sha256="1sk4racp77jbhjaqkghalg139aznchyn1yknyrv975ck040zs8cw"; depends=[]; }; + RWiener = derive2 { name="RWiener"; version="1.3-3"; sha256="0afrgflyfjv4jqm04had74zz4cs934zwvyxaan1r4qpg383kibpq"; depends=[]; }; RWildbook = derive2 { name="RWildbook"; version="0.9.3"; sha256="1pznzmv8n33hhj61h07fha1gzafcx705n8323cnz3mx6ziijfh28"; depends=[data_table jsonlite marked]; }; RWsearch = derive2 { name="RWsearch"; version="4.8.0"; sha256="0zbf03dhcmbyrs2yhl3phk65471qnd7iszvk9rn81fqhd522vq66"; depends=[brew latexpdf networkD3 sig sos XML]; }; RXKCD = derive2 { name="RXKCD"; version="1.9.2"; sha256="1yk12ic6kdbwc44ppag2yfnga7xjmifkglhvcw93vc3qg469mm15"; depends=[jpeg plyr png RJSONIO]; }; RXMCDA = derive2 { name="RXMCDA"; version="1.5.5"; sha256="1ci73q8xf3xxqw8b7sk83v5vz2cqgcb4lkx7qi3hd1ff4xkz1fpa"; depends=[kappalab XML]; }; - RXshrink = derive2 { name="RXshrink"; version="1.3.2"; sha256="00igwc4v2dc9328akrqswac7f4hn4ij03x9ck932xd0l67zfp8ah"; depends=[lars]; }; + RXshrink = derive2 { name="RXshrink"; version="1.4.1"; sha256="1nfph3xz2345kfajg0xbr4ww38vyq1yc46rz0n6ab1h7bys93mx5"; depends=[lars]; }; RYandexTranslate = derive2 { name="RYandexTranslate"; version="1.0"; sha256="0qrv5mnnkn5fs7vx6i74z46s0qj9f98km5bizgj00832qyrq8q1s"; depends=[httr jsonlite RCurl]; }; RYoudaoTranslate = derive2 { name="RYoudaoTranslate"; version="1.0"; sha256="1i3iyqh97vpn02bm66kkmw52ni29js30v18n2aw8pvr88jpdgxm4"; depends=[RCurl rjson]; }; RZabbix = derive2 { name="RZabbix"; version="0.1.0"; sha256="0c5803chpzvp7dk9pjfx5f0nqynb76ywakz04ah2nw07ypvcyjyr"; depends=[httr jsonlite]; }; @@ -3653,28 +3740,32 @@ in with self; { RZooRoH = derive2 { name="RZooRoH"; version="0.2.3"; sha256="0ihfc8hxqmlkx1xhkz3psw8szwjp01imasvynxbzrjmjf4q6amvq"; depends=[data_table doParallel foreach iterators RColorBrewer]; }; RaPKod = derive2 { name="RaPKod"; version="0.9"; sha256="1qxzi2lf431zd44bcd98ybhzydy1cz12g864l6r668jk91aqy1qg"; depends=[kernlab MASS proxy Rcpp RcppArmadillo]; }; RaProR = derive2 { name="RaProR"; version="1.1-5"; sha256="11hwg609pjcd13qnbchbs86c3q8f4nmh1xfxg3dsiijljl6lzx3n"; depends=[]; }; - RaceID = derive2 { name="RaceID"; version="0.1.9"; sha256="0jy0bavlzq522zp5jf4s1dkm2yi40kjwx9cks7lylqcr9sml6xj8"; depends=[cluster coop FateID FNN fpc ggplot2 ica igraph irlba locfit MASS Matrix NlcOptim pheatmap propr quadprog randomForest RColorBrewer Rcpp Rtsne umap vegan]; }; + RaSEn = derive2 { name="RaSEn"; version="1.0.0"; sha256="13q9cksn2y56i4rbl95iqhz361bbm2kb454n2rcav2ylpi7prgg5"; depends=[caret class doParallel e1071 foreach formatR ggplot2 gridExtra MASS nnet randomForest rpart]; }; + RaceID = derive2 { name="RaceID"; version="0.2.1"; sha256="1xh2c2vrm7x4573knk17sws61mr5z0w4whafjksyc5ddkm3wwrlz"; depends=[cluster coop FateID FNN fpc ggplot2 ica igraph irlba locfit MASS Matrix NlcOptim pheatmap propr quadprog randomForest RColorBrewer Rcpp Rtsne umap vegan]; }; RadData = derive2 { name="RadData"; version="1.0.0"; sha256="14npn5vjcpvymdjkby83msjr3f1gsmzh0083gz6cgrp270fglkaw"; depends=[]; }; RadOnc = derive2 { name="RadOnc"; version="1.1.5"; sha256="0yz2pzcpz32xs04xfs90i714nn28cky7701w1h99cqsxsp892jkq"; depends=[geometry oro_dicom ptinpoly rgl]; }; RadTran = derive2 { name="RadTran"; version="1.0"; sha256="1sb8d4y3b37akbxhdavxrkp34zn3ip061b7gzy0ga57pyn76cvpn"; depends=[ReacTran rootSolve]; }; RadioSonde = derive2 { name="RadioSonde"; version="1.4"; sha256="1v9jdpynmb01m3syhas1s08xxlvjawhlvjkyhils2iggi4xw4hiq"; depends=[]; }; - Radviz = derive2 { name="Radviz"; version="0.9.1"; sha256="15zz426pqr8wv6wcyj3gnflvslz0123lwhk7878gk794fz74a7yi"; depends=[dplyr ggplot2 hexbin igraph pracma Rcpp RcppArmadillo rlang]; }; + Radviz = derive2 { name="Radviz"; version="0.9.2"; sha256="1k4bykrs6932n2iz2nngbs2k45ra7nq3rpxw4acpvxwxfciiq3ia"; depends=[dplyr ggplot2 hexbin igraph pracma Rcpp RcppArmadillo rlang]; }; RagGrid = derive2 { name="RagGrid"; version="0.2.0"; sha256="0crnpd75lyhd0awzqzqy7bzw4ydgxpyhy1ybb1ff4qsnisbjdbba"; depends=[crosstalk htmltools htmlwidgets knitr]; }; RainfallErosivityFactor = derive2 { name="RainfallErosivityFactor"; version="0.1.0"; sha256="16yrr2bl62m1nr81nzvmdq7s78f7fg50dah5dg5q4j4j7z8qfsqz"; depends=[]; }; Ramble = derive2 { name="Ramble"; version="0.1.1"; sha256="0225za85i5nvf8l89i5bz7nxsxykd3v9fp1wgihmncca6n8vhgpl"; depends=[]; }; Rambo = derive2 { name="Rambo"; version="1.1.1"; sha256="036rvjj6gcnf2gg5xl55n5p8j1pzifb9wmlpwnymz1csxgkl477i"; depends=[sna]; }; RandMeta = derive2 { name="RandMeta"; version="0.1.0"; sha256="0bh3rkdfmwqym47q8f90pw3mmx7q8jyp4rz16ggqrmk1b5bdyqjb"; depends=[]; }; - RandPro = derive2 { name="RandPro"; version="0.2.0"; sha256="1bhbg6lvgr9h6rq3g3ljm2422ngjb18maj80l7f659ql88c8h6mj"; depends=[caret e1071]; }; + RandPro = derive2 { name="RandPro"; version="0.2.2"; sha256="092mm9gybvcby2n161nldlq8s2ja2bc43jnkln6ss3lr29rmi9b3"; depends=[caret e1071]; }; RandVar = derive2 { name="RandVar"; version="1.2.1"; sha256="17c6bx644n604zpggmwx1z3krgd9v7c88il45cf5yhp7zf7cc718"; depends=[distr distrEx startupmsg]; }; RandomCoefficients = derive2 { name="RandomCoefficients"; version="0.0.2"; sha256="04l0aczrlbkjk0687w2gxs85ia71yy69mgankwkl37ksznh6y81m"; depends=[fourierin ks orthopolynom polynom RCEIM rdetools robustbase sfsmisc snowfall statmod tmvtnorm VGAM]; }; RandomFields = derive2 { name="RandomFields"; version="3.3.8"; sha256="1l4r67vmdisdawlhv6l4lqsn5i8wg2p1hs7v5553b3j2mvyy424a"; depends=[RandomFieldsUtils sp]; }; RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="0.5.3"; sha256="0783z23rm5kv0x7796ggx6g07wpf18n7fjzv9r9ryji55sx3r0pa"; depends=[]; }; RanglaPunjab = derive2 { name="RanglaPunjab"; version="2.3.4"; sha256="01j3gww9kil02d44jwlkz6j7lwn2him830bnshkly0s7mgh22pgr"; depends=[jpeg shiny tidyverse]; }; - RankAggreg = derive2 { name="RankAggreg"; version="0.6.5"; sha256="031mff1zydxqygx8bn3g0qpwq08kaq5bpmzy6z2y0fa03hgsxz5c"; depends=[gtools]; }; + RankAggreg = derive2 { name="RankAggreg"; version="0.6.6"; sha256="1g70njfv776qgp3i52kr6yxg7x9qliqaj33jm5vkgbajw1ampsdx"; depends=[gtools]; }; RankResponse = derive2 { name="RankResponse"; version="3.1.1"; sha256="04s588zbxcjgvpmbb2x46bbf5l15xm7pwiaxjgc1kn1pn6g1080c"; depends=[]; }; Rankcluster = derive2 { name="Rankcluster"; version="0.94.2"; sha256="1wm7vbv2a4py9yjpcqrzcpfig18n02ip4qkqi62rw32abdlmz6sx"; depends=[Rcpp RcppEigen]; }; RankingProject = derive2 { name="RankingProject"; version="0.2.0"; sha256="1y2sydppi7y7j9c7r6xcqfm4v9z646w48pnksf11da8lq2nczww8"; depends=[]; }; RapidPolygonLookup = derive2 { name="RapidPolygonLookup"; version="0.1.1"; sha256="0h4snn3haa4a5rkafg98419by4nnz219wsm3y0dqgm4hw4bvha0g"; depends=[PBSmapping RANN RgoogleMaps sp]; }; + RapidoPGS = derive2 { name="RapidoPGS"; version="1.0.2"; sha256="1lqvf563zzy5i0sljw7jqwilsj78yqnq821ghm0aqs9ixn5f9gn2"; depends=[bigsnpr curl data_table GenomicRanges IRanges RCurl]; }; + Raquifer = derive2 { name="Raquifer"; version="0.1.0"; sha256="148inkn6yiyvicw0b4kw99n172xsvhrrdx1khghqs966smjw54wy"; depends=[dplyr gsl magrittr pracma Rdpack]; }; + Rarefy = derive2 { name="Rarefy"; version="1.0"; sha256="0zc1aab7cf9fnx0fq4rz236y5jfip09d26c8vrhk9v8p7ivm8hb1"; depends=[ade4 adiv dplyr geiger vegan]; }; Rarity = derive2 { name="Rarity"; version="1.3-6"; sha256="1m742qrgc0c5vda9sb2q5n3ghmqnlnfhr1cfpxfs7s5ic707gmlb"; depends=[]; }; RaschSampler = derive2 { name="RaschSampler"; version="0.8-8"; sha256="0y7dkgv1cy6r1mbmyqm27qwl10rl12g1svpx9jkzq5hq0hnm2xhw"; depends=[]; }; Rata = derive2 { name="Rata"; version="0.0.2"; sha256="1s7am08691lil5hbd8jpa5wnbvr0qqf0gkxczpm6yvizbjpx16qx"; depends=[ggplot2 glpkAPI lpSolveAPI reshape2 Rirt]; }; @@ -3687,21 +3778,23 @@ in with self; { RblDataLicense = derive2 { name="RblDataLicense"; version="0.2.2"; sha256="1xra0sn4s8rrjmayg36jg6l3i1cvx9ngh30xyhi18226h0qinx9n"; depends=[RCurl xts]; }; Rblpapi = derive2 { name="Rblpapi"; version="0.3.10"; sha256="14wkrjfbjc3rb3159sz8wdvshmrh3d17s01swp59s8if7hr94hq0"; depends=[BH Rcpp]; }; Rborist = derive2 { name="Rborist"; version="0.2-3"; sha256="0qf4m6ibr4mlrmsybb5b8f1hkmp9n6ksjsxc4msd3q4rr99zkczk"; depends=[data_table digest Rcpp]; }; - Rcan = derive2 { name="Rcan"; version="1.3.81"; sha256="0w3c0hlhnkxgzd8ibddprisry3x45blbpxjkcgcldfnnyj5l7mpv"; depends=[data_table ggplot2 scales]; }; + Rcan = derive2 { name="Rcan"; version="1.3.82"; sha256="0asmlhh786c9gfgxkqybv8xzz8bqzirxvq8nr4gglx1pc812idkb"; depends=[data_table ggplot2 scales]; }; Rcapture = derive2 { name="Rcapture"; version="1.4-3"; sha256="1rk1zgab6zi7hcmyqlb18kycv3cd15c7lwhw5kig96f2n3xymzig"; depends=[]; }; RcellData = derive2 { name="RcellData"; version="1.3-2"; sha256="1zzkgpj2pc42xzz5pspyj981a04gjpna4br3lxna255366ijgz4l"; depends=[]; }; Rcereal = derive2 { name="Rcereal"; version="1.2.1"; sha256="0nl4p0wqpni16z62610sqcxsz1x6kannl2s1zakpmjkk80pyxlk6"; depends=[]; }; RcextTools = derive2 { name="RcextTools"; version="0.1.1"; sha256="1rrij4ryspff9mn1c3jlzjprnipak7nzlb488pk0ci0awaccp5ga"; depends=[data_table igraph sqldf visNetwork]; }; Rcgmin = derive2 { name="Rcgmin"; version="2013-2.21"; sha256="02igq7bdlxwa7ysfiyvqfhcvgm866lrp2z3060z5lmnp6afa0958"; depends=[numDeriv]; }; - RchivalTag = derive2 { name="RchivalTag"; version="0.1.1"; sha256="0kcnzcpj2x23s2d75v6bk3rcp78c38b2dw28afndarmjl6ipzy24"; depends=[mapdata maps maptools ncdf4 oceanmap PBSmapping plyr pracma raster readr rgeos sp]; }; + RchivalTag = derive2 { name="RchivalTag"; version="0.1.2"; sha256="0285n5mxs643546qhyqkccaq1fkn1hxagrhj2abahskfl53i9rsw"; depends=[dygraphs mapdata maps maptools ncdf4 oceanmap PBSmapping plyr pracma raster readr rgeos sp xts]; }; + Rchoice = derive2 { name="Rchoice"; version="0.3-2"; sha256="0ldz39cx4blzikwr454f9w263hm8mscxv3rirryzs9xc8sb7j6df"; depends=[Formula maxLik msm plm plotrix]; }; RclusTool = derive2 { name="RclusTool"; version="0.91.3"; sha256="0f6v2p6dg3fq3vzys6hgwmmgyrxfj2kb4wpbywd7f9p5yd9cfd88"; depends=[class cluster conclust corrplot e1071 factoextra FactoMineR ggplot2 jpeg MASS mclust mda mmand nnet png randomForest reshape sp stringi stringr tcltk2 tkrplot]; }; Rcmdr = derive2 { name="Rcmdr"; version="2.6-2"; sha256="1fv4qx4w9x3gi64vba9qdkp6kghl83z5q7mmdjx7068n484kyhm1"; depends=[abind car effects lme4 RcmdrMisc relimp tcltk2]; }; - RcmdrMisc = derive2 { name="RcmdrMisc"; version="2.7-0"; sha256="08k4x957x08cmhad1r5w502zan13gmcfap16wjfb92b4v3f6dzqy"; depends=[abind car colorspace e1071 foreign haven Hmisc MASS nortest readstata13 readxl sandwich]; }; - RcmdrPlugin_BiclustGUI = derive2 { name="RcmdrPlugin.BiclustGUI"; version="1.1.1"; sha256="1sdc8ibggz8wpn77g7hddyl7lg86dbyw8qax63p6cqx1pfhb4rra"; depends=[BcDiag BiBitR BicARE biclust fabia gplots iBBiG Rcmdr rqubic s4vd superbiclust viridis]; }; + RcmdrMisc = derive2 { name="RcmdrMisc"; version="2.7-1"; sha256="1djm21mfk1l8zmaz6p51li0swpvzs05z9p11ad83d5rbbkdpwl7w"; depends=[abind car colorspace e1071 foreign haven Hmisc lattice MASS nortest readstata13 readxl sandwich]; }; + RcmdrPlugin_BWS1 = derive2 { name="RcmdrPlugin.BWS1"; version="0.1-2"; sha256="1nkrrr90z7ard070i93fsrsw4zdx8vd975846kf4r9kljmbjnii9"; depends=[crossdes Rcmdr support_BWS support_CEs survival]; }; + RcmdrPlugin_BiclustGUI = derive2 { name="RcmdrPlugin.BiclustGUI"; version="1.1.3"; sha256="1v0vdr6rffcq5qjqwmnmxbjwcf01zp7lrj81grnjxwqg4xjrcj69"; depends=[BcDiag BiBitR BicARE biclust fabia gplots iBBiG Rcmdr s4vd superbiclust viridis]; }; RcmdrPlugin_DoE = derive2 { name="RcmdrPlugin.DoE"; version="0.12-3"; sha256="1iifn71kjjgcp7dfz2pjq57mgbv4rrznrl3b3k9gdc2dva1z9zvc"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc relimp]; }; RcmdrPlugin_EACSPIR = derive2 { name="RcmdrPlugin.EACSPIR"; version="0.2-2"; sha256="10r6rb0fwlilcnqxa38zh7yxc54x1a0by5x4f6gzdn9zs7aj5l1r"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; }; RcmdrPlugin_EBM = derive2 { name="RcmdrPlugin.EBM"; version="1.0-10"; sha256="02zips1jbfn7cshjlrm1gr632px2zxlys8i0f1nrf1gifl44v1qw"; depends=[abind epiR Rcmdr]; }; - RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.41.1"; sha256="0nfb2fdhag4593rmbfi4s4lbsbx76yizfn06rrch4q0sshhrg06m"; depends=[Rcmdr readstata13]; }; + RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.51"; sha256="1cyfgg48mz5c0fygl4wwd1ijqg0hjzijd6298rvjpin7x7gra3i4"; depends=[Rcmdr readstata13]; }; RcmdrPlugin_EcoVirtual = derive2 { name="RcmdrPlugin.EcoVirtual"; version="1.0"; sha256="0q879wnrmgbaddv883q9zdnp0i7kjcgn8cffv7lp8nrsqil6l7mc"; depends=[EcoVirtual Rcmdr]; }; RcmdrPlugin_Export = derive2 { name="RcmdrPlugin.Export"; version="0.3-1"; sha256="17fn3si6b6h20c52k1k6fv9mslw3f9v0x1kxixzcvq54scdx0sk0"; depends=[Hmisc Rcmdr xtable]; }; RcmdrPlugin_FactoMineR = derive2 { name="RcmdrPlugin.FactoMineR"; version="1.7"; sha256="1145rpzhq219sl0j2bg5xa0ihq13lmr7ahcn3db4a8mqlz2fp8zy"; depends=[FactoMineR Rcmdr]; }; @@ -3722,11 +3815,11 @@ in with self; { RcmdrPlugin_TeachStat = derive2 { name="RcmdrPlugin.TeachStat"; version="1.0.10"; sha256="0kbbvwjyfmd14d2nxiyin934vz3n3fgbp04bb8hxpcff3sp3wbxk"; depends=[Hmisc randtests Rcmdr tcltk2 tseries]; }; RcmdrPlugin_TeachingDemos = derive2 { name="RcmdrPlugin.TeachingDemos"; version="1.1-0"; sha256="0fgl1v1g74ca14pf3mmbv26j09v7jy6ddyap5qavgiy9s8qrwrh8"; depends=[Rcmdr rgl TeachingDemos tkrplot]; }; RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="4.2-6"; sha256="1fdy1xvrfjy2yz9ihhayj3d0avyx8xqlblb2wv73fmqvnvihag49"; depends=[randtests Rcmdr rmarkdown TeachingDemos tseries]; }; + RcmdrPlugin_WorldFlora = derive2 { name="RcmdrPlugin.WorldFlora"; version="1.0"; sha256="1hjk3f4r71f3615139h0986bgx09h7ayd6shsvyj37axhkvivj8q"; depends=[Rcmdr WorldFlora]; }; RcmdrPlugin_aRnova = derive2 { name="RcmdrPlugin.aRnova"; version="0.0.5"; sha256="0ys3565pcbr554yb1gi2h149vhvwc0gdfmh7mz8zzd4367hqn553"; depends=[Rcmdr]; }; RcmdrPlugin_coin = derive2 { name="RcmdrPlugin.coin"; version="1.0-22"; sha256="0qmdjnjmgq52wgl4llg69q9x7hvwd73mz3swv0sv88v8zqg7xj93"; depends=[coin multcomp Rcmdr survival]; }; RcmdrPlugin_depthTools = derive2 { name="RcmdrPlugin.depthTools"; version="1.3"; sha256="09mjn5jn4rdj1lh515vr3xlnk615flg13kcwbpk0an2si4xkgm9h"; depends=[depthTools Rcmdr]; }; RcmdrPlugin_lfstat = derive2 { name="RcmdrPlugin.lfstat"; version="0.8.3"; sha256="1rcr43dqyb9zw9av3awkz0640vmvhxrafal5brnhqnpg4hfbpma3"; depends=[lfstat Rcmdr]; }; - RcmdrPlugin_mosaic = derive2 { name="RcmdrPlugin.mosaic"; version="1.0-7"; sha256="0k6xaz2dfm9ch9lxqsh19jm8d4bbyjj2ffmjjxl57kanb3pvrrwv"; depends=[ENmisc Hmisc Rcmdr vcd]; }; RcmdrPlugin_orloca = derive2 { name="RcmdrPlugin.orloca"; version="4.7"; sha256="01yd1a7l9r8mb3gqhx7rq9cr3clpjfzzsq7pply6xhv9g77gs88z"; depends=[orloca orloca_es Rcmdr]; }; RcmdrPlugin_plotByGroup = derive2 { name="RcmdrPlugin.plotByGroup"; version="0.1-0"; sha256="10wc7lnihsrldsynq2s0syr1aqmvfnj9rhgwh1nkk7jlrwcgj0z6"; depends=[lattice Rcmdr]; }; RcmdrPlugin_pointG = derive2 { name="RcmdrPlugin.pointG"; version="0.6.6"; sha256="0sc3akbpdys353va05b40g3rq8qihw0pmhvv0kckkhsgrbr8mc07"; depends=[Rcmdr RColorBrewer]; }; @@ -3739,30 +3832,30 @@ in with self; { RcmdrPlugin_temis = derive2 { name="RcmdrPlugin.temis"; version="0.7.10"; sha256="02rs5xdj6g57frndc87fly0ans16584j4d0rfpy1h72655cz66ab"; depends=[ca lattice latticeExtra NLP R2HTML Rcmdr RColorBrewer slam stringi tcltk2 tm zoo]; }; Rcolombos = derive2 { name="Rcolombos"; version="2.0.2"; sha256="0l92icjqqm5fxafqwd09lnmv5x6kvjdg8cphlm37q86nslwr5rkk"; depends=[httr]; }; Rcplex = derive2 { name="Rcplex"; version="0.3-3"; sha256="0abmrqphrpdlc831hwbwx15z4vdgn385kxhnqlbb9v0sjmfyszsl"; depends=[slam]; }; - Rcpp = derive2 { name="Rcpp"; version="1.0.4.6"; sha256="00mk23zmrqn1c4mk9d6csjcbnl12wd7yicjk2ikmw5dyvdfngbs5"; depends=[]; }; + Rcpp = derive2 { name="Rcpp"; version="1.0.5"; sha256="012wbj446k1wz6bp6bpf6h77ypvcsw69xvnax6qf6vyc7dj2qimq"; depends=[]; }; Rcpp11 = derive2 { name="Rcpp11"; version="3.1.2.0"; sha256="1x6n1z7kizagr5ymvbwqb7nyn3lca4d4m0ks33zhcn9gay6g0fac"; depends=[]; }; RcppAPT = derive2 { name="RcppAPT"; version="0.0.6"; sha256="0gkvs276hwa4yzd1bwf12p83cq2i1k021nq4y6ll1gcrj41mkdns"; depends=[Rcpp]; }; RcppAlgos = derive2 { name="RcppAlgos"; version="2.4.1"; sha256="0s97v2agy8pzaqfjm7cabpfxpkidxl1zwi4vkjdhsfzxjp5xwwms"; depends=[gmp Rcpp RcppThread]; }; RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.16"; sha256="0bfa35lp6vc4b0h3ymvdx50br233q8vvyjml34ngi81rj0imz3fr"; depends=[Rcpp]; }; - RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.9.860.2.0"; sha256="1rg9ak0zbv8d9cyj10jq52nrcbk1pvfz28kbkhpx79mpjhrl7pb5"; depends=[Rcpp]; }; + RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.9.900.2.0"; sha256="03dfy0avzpiaf1jk8h18y2gyj3zwlfvvfixi13q3zq5qaz93by2r"; depends=[Rcpp]; }; RcppBDT = derive2 { name="RcppBDT"; version="0.2.3"; sha256="0gnj4gz754l80df7w3d5qn7a57z9kq494n00wp6f7vr8aqgq8wi1"; depends=[BH Rcpp]; }; - RcppBigIntAlgos = derive2 { name="RcppBigIntAlgos"; version="0.2.2"; sha256="1sby2bpp5w7mac4mm9grwyfvd54s0nida3grbs471prkba3h50zv"; depends=[gmp Rcpp RcppThread]; }; - RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.7"; sha256="0q4vj0dh04m2v2p8x0wd78hbfxzj4zi1nmp52ndwnirhs6zfny4l"; depends=[Rcpp]; }; + RcppBigIntAlgos = derive2 { name="RcppBigIntAlgos"; version="0.2.4"; sha256="0vy95igfsdnh55vavkhl38f793ifhf63iaxdy3q7m5lhy3fakcz4"; depends=[gmp Rcpp RcppThread]; }; + RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.8"; sha256="13r6linn4hrzn1ia68pir861awv55bc99zm2myv68ppkb0w4m15w"; depends=[Rcpp]; }; RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.10"; sha256="175bn75akwgz3vcp0n59kiqqz7q9cwkvih241nj8v810cp4gpmkp"; depends=[Rcpp]; }; - RcppCWB = derive2 { name="RcppCWB"; version="0.2.8"; sha256="15iiv5kwh7c3pprpyyvjnbj80x9245f3zmfiy41w661n3cnka68p"; depends=[Rcpp]; }; + RcppCWB = derive2 { name="RcppCWB"; version="0.3.0"; sha256="1jzr7zgaq2gkqialscr9zh9imax37rdg1zshvj42cwf30za0fb8f"; depends=[Rcpp]; }; RcppClassic = derive2 { name="RcppClassic"; version="0.9.12"; sha256="0v9v34i1c4dkplavdl14kz1k2rnk4hsaiyv6rkc9403z9isvzzr0"; depends=[Rcpp]; }; RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.2"; sha256="0dr2104miy7psr73nicfs84652ai0d5liw6wxcwyrx7fmys3p638"; depends=[Rcpp RcppClassic]; }; RcppDE = derive2 { name="RcppDE"; version="0.1.6"; sha256="1i9jj595nqpb16y22z2b8fcf0gq1fg0pbiisbd837p1cyw4nff69"; depends=[Rcpp RcppArmadillo]; }; RcppDL = derive2 { name="RcppDL"; version="0.0.5"; sha256="1gii00bna6k9byaax7gsx42dv1jjnkrp4clbmdq59ybq3vkvw8z2"; depends=[Rcpp]; }; RcppDate = derive2 { name="RcppDate"; version="0.0.1"; sha256="0psa7drm6chwn5w3h6yhaavf33mvzfaghzqa404l5yvxczy22xqi"; depends=[]; }; RcppDist = derive2 { name="RcppDist"; version="0.1.1"; sha256="02g57xwfipdcljv06krhm02dbqn9kfyj2km6rdg0a7vq9prwdz1x"; depends=[Rcpp RcppArmadillo]; }; - RcppDynProg = derive2 { name="RcppDynProg"; version="0.1.3"; sha256="099hbm355d30rwxqjd7j4dfw678551dc5v4y7yy6q4xxyf527lbs"; depends=[Rcpp RcppArmadillo wrapr]; }; + RcppDynProg = derive2 { name="RcppDynProg"; version="0.1.4"; sha256="09ylswc8g4v79n1f7vhdbva7rxm8r5xic1rl4fq45w5c1wsgd74j"; depends=[Rcpp RcppArmadillo wrapr]; }; RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.7.0"; sha256="1b78qcjim0n9klgkr82n794d6bj9r9f33g0kcsszsns2hir65sk2"; depends=[Matrix Rcpp]; }; RcppEigenAD = derive2 { name="RcppEigenAD"; version="1.0.0"; sha256="18zm9hsfqwiicxsdm87ix3qc261ljxxn2s736p6aayx82b6vwkz6"; depends=[BH functional memoise Rcpp RcppEigen Rdpack readr]; }; - RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.12.1.1"; sha256="1nrfkvmz7p6sv1chis205ac13grqzrr950bh5fv1hl5qhyjj2iyk"; depends=[Rcpp RcppArmadillo]; }; + RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.13.0.1"; sha256="016nwz2z17sxw75sph6paj1xkss3zlmcqxiwmhw07ckyrhyf0vji"; depends=[Rcpp RcppArmadillo]; }; RcppExamples = derive2 { name="RcppExamples"; version="0.1.9"; sha256="0568zipgjxgmx086mlfpp5n7v8kf50gwrylvhl1bgvzb2vvr9dhj"; depends=[Rcpp]; }; RcppFaddeeva = derive2 { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[knitr Rcpp]; }; - RcppGSL = derive2 { name="RcppGSL"; version="0.3.7"; sha256="0cnw2k7cfqrm79r6j283aybflxig80x4n4rjkfp2317wf10mrsa5"; depends=[Rcpp]; }; + RcppGSL = derive2 { name="RcppGSL"; version="0.3.8"; sha256="17nlayy6gvwb3v6l5aiqm84i75yf4dfi3zclxrgpqwf3j9v09yvz"; depends=[Rcpp]; }; RcppGetconf = derive2 { name="RcppGetconf"; version="0.0.3"; sha256="1qcnn482h9b8aw798frnkza4bzzpihp0pf4s1mj6zmn2ar01hsl0"; depends=[Rcpp]; }; RcppGreedySetCover = derive2 { name="RcppGreedySetCover"; version="0.1.0"; sha256="1v84i9gsmvpkmgd4niqnzp58nhrgn2j4rggsrnlh391ikdfrl51x"; depends=[BH data_table Rcpp]; }; RcppHMM = derive2 { name="RcppHMM"; version="1.2.2"; sha256="0scdzmns1yw2gbarblzd6cbvndlysz54ff17qijiz17ql5cyzly6"; depends=[Rcpp RcppArmadillo]; }; @@ -3773,17 +3866,18 @@ in with self; { RcppMsgPack = derive2 { name="RcppMsgPack"; version="0.2.3"; sha256="0ffdw5ckkax8j87q0ykjhyp45l7gvxjppdi73kc4r5qxvijll2g3"; depends=[BH Rcpp]; }; RcppNLoptExample = derive2 { name="RcppNLoptExample"; version="0.0.1"; sha256="1fml6hpa12q0lgg5fg6fi9lz6mckwh345pbh95mld2qagzvmg01n"; depends=[nloptr Rcpp]; }; RcppNumerical = derive2 { name="RcppNumerical"; version="0.4-0"; sha256="1a92fql6mijhnr1kxkcxwivf95pk9lhgmhzkshs51h0ybfv5krik"; depends=[Rcpp RcppEigen]; }; - RcppParallel = derive2 { name="RcppParallel"; version="5.0.0"; sha256="1mhd6vp47xmfw533h0pkvydv96m57fspvd85g8m7iqb5rcxvhhdb"; depends=[]; }; + RcppParallel = derive2 { name="RcppParallel"; version="5.0.2"; sha256="10bg4fw38m64dhy543rwq2nnjjc9y24iggk343xslrb3ij8018lc"; depends=[]; }; RcppProgress = derive2 { name="RcppProgress"; version="0.4.2"; sha256="0j2b37gwjpgmrnr00srdzm751hzlpsjb54ph63xxmcdfnwhlnqmi"; depends=[]; }; RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.0.3"; sha256="0cj95y8jcjm33d65y42f5ijw775kq3mh2p0659mp3i3r9fvaishk"; depends=[BH Rcpp]; }; RcppRedis = derive2 { name="RcppRedis"; version="0.1.10"; sha256="07cxp0xdrg1bydlvgryf8jivlqicd880xdfdz6grhqqdxwss8qv1"; depends=[BH RApiSerialize Rcpp]; }; RcppRoll = derive2 { name="RcppRoll"; version="0.3.0"; sha256="0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"; depends=[Rcpp]; }; RcppSMC = derive2 { name="RcppSMC"; version="0.2.1"; sha256="0k2k1pj05i6hf7gpar3r4mbv9cs04bd4v657saq9vhy30300vg49"; depends=[Rcpp RcppArmadillo]; }; - RcppSimdJson = derive2 { name="RcppSimdJson"; version="0.0.4"; sha256="1bpsrbjhh9l84h2na2dk08xhd5k72vpha6zg0f81f373ckmvd6b3"; depends=[Rcpp]; }; + RcppSimdJson = derive2 { name="RcppSimdJson"; version="0.1.1"; sha256="0vdiqf6riiabb3igmnx95ihd1fv533923qizs71rqq7q2abfpp3a"; depends=[Rcpp]; }; RcppStreams = derive2 { name="RcppStreams"; version="0.1.3"; sha256="06il7q3afaws57m0fxf04f2p5dvs23l1f7gl78pxwzclacdy3839"; depends=[BH Rcpp]; }; RcppTN = derive2 { name="RcppTN"; version="0.2-2"; sha256="0m2wc5n1fzxv56s4gqqnygb24dbadgrpgjm4bs4hr6qazgjapymf"; depends=[Rcpp]; }; RcppTOML = derive2 { name="RcppTOML"; version="0.1.6"; sha256="1nyv4ynryh8vcrzyq01nzj13is40bjhxazlj9ilapyjdv9h5w3bs"; depends=[Rcpp]; }; RcppThread = derive2 { name="RcppThread"; version="0.5.4"; sha256="1mlzng6di30p4nfvq9l3z241vb8rwnpa2yjbafs2vzrl6v3zcfnf"; depends=[]; }; + RcppUUID = derive2 { name="RcppUUID"; version="1.0.0"; sha256="0sx25z71bkjsf3ggljqkv1pji5kc32i3lkq28igiwixxfl2kj89b"; depends=[BH Rcpp]; }; RcppXPtrUtils = derive2 { name="RcppXPtrUtils"; version="0.1.1"; sha256="0jh64c46gp99d2nsih14vx34pamc8i7gkmiy2nj94rx3sxq62yh5"; depends=[Rcpp]; }; RcppXsimd = derive2 { name="RcppXsimd"; version="7.1.4"; sha256="171281f8lbdnnv3q9x5c35ak8fkrymx7llnpv88dlh742z8nny1j"; depends=[Rcpp]; }; RcppXts = derive2 { name="RcppXts"; version="0.0.4"; sha256="143rhz97qh8sbr6p2fqzxz4cgigwprbqrizxpkjxyhq8347g8p4i"; depends=[Rcpp xts]; }; @@ -3793,13 +3887,14 @@ in with self; { Rcsdp = derive2 { name="Rcsdp"; version="0.1.57.1"; sha256="1dya0c0fcwr6ydcamz8m06nnq0b80vg7b22dg5jv3qi1n1fgp4lv"; depends=[]; }; Rcssplot = derive2 { name="Rcssplot"; version="1.0.0"; sha256="0hnzwjwk9zh4zbzy8sa0z6amikvpd9k1p1abd38khr8q8k1k8jiv"; depends=[]; }; Rd2md = derive2 { name="Rd2md"; version="0.0.2"; sha256="07j1nnsk5nyl8kvgvh9f684g6bhc01jiq1fcmq2pnpx57jdzfbpi"; depends=[knitr]; }; - Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.10"; sha256="1bd5n7gdnpwncyxa4csh6ky60yb2i1bn5scsmbaba58b56crgyb5"; depends=[formatR roxygen2 xfun]; }; + Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.11"; sha256="1sqzhfffap8i9nwclsj0q77sn6i0gzkn2hqfvw6k2w7j6aypyv4i"; depends=[formatR roxygen2 xfun]; }; + Rdca = derive2 { name="Rdca"; version="0.1.0"; sha256="06s4n5xpla937q9f55xmsickvdiwiapxmwqvn6k0zsacisscaagl"; depends=[dplyr magrittr minpack_lm Rcpp RcppArmadillo Rdpack]; }; Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; }; - Rdimtools = derive2 { name="Rdimtools"; version="1.0.1"; sha256="1r6pqnm0j21dp8mqbamqdnwabljw331gh8v68jayx67bn25ap3w9"; depends=[CVXR maotai Rcpp RcppArmadillo RcppDE RcppDist Rcsdp Rdpack RSpectra]; }; + Rdimtools = derive2 { name="Rdimtools"; version="1.0.3"; sha256="0s1wq6cc0hsrb3iw8da0cwrf26s616cmlglkqlkg0bi91s0iw971"; depends=[CVXR maotai Rcpp RcppArmadillo RcppDE RcppDist Rcsdp Rdpack RSpectra]; }; Rdistance = derive2 { name="Rdistance"; version="2.1.3"; sha256="03wh6y9h5jgfc6xdncpgyz0v7lqavikp3pf5wwfmm2rqfj7yjr8c"; depends=[]; }; - Rdpack = derive2 { name="Rdpack"; version="0.11-1"; sha256="080y15p2hl4jsq91ak2f1y2kx1iqq5c5wzyx3zyhjwp01cahy0jq"; depends=[bibtex gbRd]; }; - Rdrools = derive2 { name="Rdrools"; version="1.1.1"; sha256="0awdj1q9ysrhwli16izi0lb6pppqxs1lb6wlv40111q483p41fj7"; depends=[dplyr magrittr purrr Rdroolsjars rJava rlang tibble]; }; + Rdpack = derive2 { name="Rdpack"; version="1.0.0"; sha256="069yh9h57z3gjl5ih1r6wyiwmgmfzkpjxrpxg8mfq7y6zr1mynsw"; depends=[bibtex gbRd]; }; Rdroolsjars = derive2 { name="Rdroolsjars"; version="1.0.1"; sha256="1l9bc1bwpj10irr973hzkhr04i1f3g998n8hcl2k2i9kgv1naqmz"; depends=[rJava]; }; + Rdrw = derive2 { name="Rdrw"; version="1.0.1"; sha256="0nagl559jr6vyq47k7axg2ivgbawmb60j80xkc8rbdapl5cb5ky1"; depends=[mvtnorm]; }; Rdsdp = derive2 { name="Rdsdp"; version="1.0.5"; sha256="04268fbajm7pgi5mxpghzw0yjwwx1dy9vdi6yhr20q2lmi6xh19w"; depends=[]; }; Rdsm = derive2 { name="Rdsm"; version="2.1.1"; sha256="07fc6c2hv0vvg15va552y54cla1mrqsd75w3zh02vc7yd226l4rj"; depends=[bigmemory]; }; Rdta = derive2 { name="Rdta"; version="1.0.0"; sha256="1zmyh61wrzqwyfjbfcxg41cri7hy9r0jfwnixcvd086y0vxq7fdn"; depends=[MCMCpack mvtnorm Rdpack]; }; @@ -3807,30 +3902,33 @@ in with self; { Rduino = derive2 { name="Rduino"; version="0.1"; sha256="0r1yy3a2n8a4niasfjn77gv130a062i802r7xhbg0abljv5m6ra5"; depends=[serial]; }; ReCiPa = derive2 { name="ReCiPa"; version="3.0"; sha256="019vlvgxnqqlwghxygfqggzp2b4x2pqzdrbhaa703zdhm58k0n1g"; depends=[]; }; ReDaMoR = derive2 { name="ReDaMoR"; version="0.4.2"; sha256="1bvhplbzn3axpl9vwygd209dmfm123ix3c2dpx1i09nhvy2v65lv"; depends=[colourpicker crayon dplyr DT igraph jsonlite magrittr markdown readr rintrojs rstudioapi shiny shinyjs visNetwork]; }; - ReIns = derive2 { name="ReIns"; version="1.0.9"; sha256="1lvc39l42zwyrsr1s5zlj34rmi1i6pvp80z5jgkql0hr9i78fmq9"; depends=[doParallel foreach Rcpp survival]; }; + ReIns = derive2 { name="ReIns"; version="1.0.10"; sha256="04rqb2jhmgq1az1c1rbs6jfg6gpxjs34k0m4w3a8gnq48l6dwqi8"; depends=[doParallel foreach Rcpp survival]; }; ReacTran = derive2 { name="ReacTran"; version="1.4.3.1"; sha256="05c9jfvj134gy3by7m3r1fbar0m39vaydr7d2py9cakzs44fqfpj"; depends=[deSolve rootSolve shape]; }; + ReadDIM = derive2 { name="ReadDIM"; version="0.2.10"; sha256="0lljl7iazjykgr5kr6j9is5hcs1h7x9im6rxflsniry6bm9j7qy3"; depends=[raster rgdal rgeos sp stringr]; }; RealVAMS = derive2 { name="RealVAMS"; version="0.4-3"; sha256="14jqrqza7bs11y1004wzi3bxkvkdfn43d82l0cyh6py8p37rfz28"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; Rearrangement = derive2 { name="Rearrangement"; version="2.1"; sha256="0q253nj62rl65vjsq6503r80qa2j35wac8lv7ydp9w260p28z923"; depends=[quantreg]; }; Recon = derive2 { name="Recon"; version="0.3.0.0"; sha256="11gag2bl00pcy7ysfycaa58qarh6aigznldkc4kkn2178bl4ii62"; depends=[rootSolve]; }; RecordLinkage = derive2 { name="RecordLinkage"; version="0.4-12"; sha256="0ycx2y8dbcslsvyvr2spnr5jy8m5la11ji0scdlqjymaamij8f3h"; depends=[ada data_table DBI e1071 evd ff ffbase ipred nnet rpart RSQLite xtable]; }; RecordTest = derive2 { name="RecordTest"; version="0.1.2"; sha256="19gxghp8b56gbyv2crjq2bzgaw5m3agd467ihbwkkjqli8cisgip"; depends=[ggplot2]; }; Records = derive2 { name="Records"; version="1.0"; sha256="08y1g2m6bdrvv4rpkhd5v2lh7vprxy9bcx9ahp1f7p062bn2lwji"; depends=[]; }; + RecurRisk = derive2 { name="RecurRisk"; version="1.0.2"; sha256="0ss1s0l8hycz90awfa5k4gxiql7ncqfn7vgipdnrxh0ly9s86j9m"; depends=[flexsurvcure SEER2R survival]; }; RedditExtractoR = derive2 { name="RedditExtractoR"; version="2.1.5"; sha256="1b6pp1vdn7jnyl8k828dgkxrx8sy2wyhkrn4rnfavqw4qvhm0mhm"; depends=[dplyr igraph magrittr RJSONIO rlang visNetwork]; }; Redmonder = derive2 { name="Redmonder"; version="0.2.0"; sha256="02qrz1b0g7hdacj2s2bks5gfwnypkbiwlmn0bv7im1zz1swg9cp8"; depends=[]; }; RefFreeEWAS = derive2 { name="RefFreeEWAS"; version="2.2"; sha256="1aya34iz5v3xfpj86x9ab998m7fdwl138ly007mgdayacvqi4a6y"; depends=[quadprog]; }; RefManageR = derive2 { name="RefManageR"; version="1.2.12"; sha256="1hfxa1qacfryk36mpaqdhdgws5jwxiyy489ikd3wa18bp1wz8dkp"; depends=[bibtex httr jsonlite lubridate plyr stringr xml2]; }; RegClust = derive2 { name="RegClust"; version="1.0"; sha256="1d9w74phw4fgafglc18j7dpmln96fvxnf1kdc9zddgj90p8yfx63"; depends=[]; }; - RegSDC = derive2 { name="RegSDC"; version="0.3.0"; sha256="17w6qqh2vyh34xrpngqknk0g04sc6q7b77l7m0g8aiy904dsvfcr"; depends=[MASS Matrix SSBtools]; }; + RegSDC = derive2 { name="RegSDC"; version="0.4.0"; sha256="050b8m56qvbfm1mcbs9ns8mq7yzr645pkxm9238q11lxkx8lgahk"; depends=[MASS Matrix SSBtools]; }; RegressionFactory = derive2 { name="RegressionFactory"; version="0.7.2"; sha256="1g23paq42xiiqavikbrflwmr8ikls9z97v1xpgg16pb88svdyayc"; depends=[]; }; RegularizedSCA = derive2 { name="RegularizedSCA"; version="0.5.4"; sha256="1nw6hd9y2n1h3j1fqqkymz13xizv5xrsj93w702kkvkbwyl3yall"; depends=[colorspace ggplot2 gtools lattice mice psych RGCCA]; }; ReinforcementLearning = derive2 { name="ReinforcementLearning"; version="1.0.5"; sha256="0zk1hy4p5adyjm1430a8ad5acn9qaax1si8qqfxqayfmlj954sj9"; depends=[data_table ggplot2 hash]; }; RelValAnalysis = derive2 { name="RelValAnalysis"; version="1.0"; sha256="1jl1gfj44gfkmc1yp6g5wwn4miydwpvxwrg76rnkv9454zrc5pvp"; depends=[zoo]; }; Relatedness = derive2 { name="Relatedness"; version="2.0"; sha256="1aidklwk8q2wdfsmhlbd3vzq9kzsyh4wn1g28biyb6lq7iwq1hl4"; depends=[]; }; + Relectoral = derive2 { name="Relectoral"; version="0.1.0"; sha256="0kpdafdvpcs6iicpc10i634nlk7dqk2nymdnnlkpp5frdxlbycvx"; depends=[dplyr ggforce ggplot2 readxl rmarkdown sf xlsx]; }; Relexon = derive2 { name="Relexon"; version="0.2.1"; sha256="1shq1v3y1jhrnkl3fdnrwv23zrh8dx0k7zwqcvn5dxpd3vzsxqxg"; depends=[readr]; }; Reliability = derive2 { name="Reliability"; version="0.0-2"; sha256="12zsicgbjqih3grbs62pw37x8wlkmnyc7g0yz6bqnfb4ym2yb7fg"; depends=[]; }; RelimpPCR = derive2 { name="RelimpPCR"; version="0.2.4"; sha256="0svfyh313wawzqx9hfb4cg0wn2ir6nd769z1k3dckdsb8d7xkh3q"; depends=[caret ggplot2 relaimpo reshape2 Rmisc]; }; Renext = derive2 { name="Renext"; version="3.1-0"; sha256="074djs4y71667aylpgh514pzijr90rgpzm4w5ayq9cgaqz22m3am"; depends=[evd numDeriv]; }; - RenextGUI = derive2 { name="RenextGUI"; version="1.4-0"; sha256="0jfg4a85j06wxk8vq2q6j8md2kcss0s7k71218gfh9vybk7hl4h6"; depends=[gWidgets gWidgetstcltk R2HTML Renext]; }; + RenvModule = derive2 { name="RenvModule"; version="1.0"; sha256="0rlgprzy5a08km98yqxjw8lkiyfikryrrmdh6r8bfhx3g2721syc"; depends=[]; }; Renvlp = derive2 { name="Renvlp"; version="2.8"; sha256="1avpy3hz693qj4d64mg6085hd0w6igwl1gs63jcda08d10zy6hg6"; depends=[Rsolnp]; }; ReorderCluster = derive2 { name="ReorderCluster"; version="1.0"; sha256="0ss750frzvj0bm1w7zblmcsjpszhnbffwlkaw31sm003lbx9hy58"; depends=[gplots Rcpp]; }; RepaymentPlan = derive2 { name="RepaymentPlan"; version="0.1.0"; sha256="1fd4n24bd5s2kqmls7mmsidblaf8nzm97kz52mfsb6i6fci0pgah"; depends=[]; }; @@ -3839,16 +3937,20 @@ in with self; { Replication = derive2 { name="Replication"; version="0.1.2"; sha256="1za7zcdaf839xf8hxy4rcrr1p80n6a3ywb2bsl3wikwa0pxdvvbh"; depends=[blavaan lavaan MASS mice quadprog rjags runjags]; }; Repliscope = derive2 { name="Repliscope"; version="1.1.0"; sha256="0hij4ng77bkd979ndbhx1nqq2rfb69q23ghyd7illgvgrc79y9mr"; depends=[colourpicker ggplot2 shiny]; }; RepoGenerator = derive2 { name="RepoGenerator"; version="0.0.1"; sha256="0d6s2sqyycaqrg32xdkp3pr5i7qmvwrfrjcd7f94a9y3lz4bz5b5"; depends=[git2r httr rmarkdown rstudioapi]; }; + Require = derive2 { name="Require"; version="0.0.7"; sha256="06mzbdrf9qg6zkahmcz1yy6r1si14a296khi1rf5m8rcabb1982l"; depends=[data_table remotes]; }; + ResidentialEnergyConsumption = derive2 { name="ResidentialEnergyConsumption"; version="1.0.1"; sha256="1dkk9hbgkc01i765dknzrfdpzpbc9k57vc4am0pj28hmlj32a0vg"; depends=[stringr]; }; ResistorArray = derive2 { name="ResistorArray"; version="1.0-32"; sha256="0zqnl0bbqrj5hn5ywhlqyrlz5ryql88qahlgs9989v4rljcxxlam"; depends=[]; }; ResourceSelection = derive2 { name="ResourceSelection"; version="0.3-5"; sha256="1vg5fkjfwkganxf0ji70pkp071841hjgr5sjxlaky8mx7n0cy80x"; depends=[MASS Matrix pbapply]; }; - RestRserve = derive2 { name="RestRserve"; version="0.2.2"; sha256="1b8wbar98qhhl46s4i7qks5nm2wy5bvfi9029gpd4gmqsq4bmbm7"; depends=[checkmate jsonlite mime R6 Rcpp Rserve uuid]; }; + RestRserve = derive2 { name="RestRserve"; version="0.3.0"; sha256="19412fxz301q69zzw1lyg1f50gvjqynm5a2jyrdzj9pr9bzids6y"; depends=[checkmate jsonlite mime R6 Rcpp Rserve uuid]; }; RevEcoR = derive2 { name="RevEcoR"; version="0.99.3"; sha256="1nym263ynjdir5kxv35jnmki9mshlplq0sk3xnjd4ac6f1cfbfqj"; depends=[gtools igraph magrittr Matrix plyr purrr stringr XML]; }; Rexperigen = derive2 { name="Rexperigen"; version="0.2.1"; sha256="158ksnd1gvzq7ii0ys2v0wrfnr001hni0i8m77p1fn1arixgmqdw"; depends=[digest jsonlite RCurl]; }; + RfEmpImp = derive2 { name="RfEmpImp"; version="2.1.5"; sha256="1bvjk71rfhpbj2j7raibsb0y3skbv1qba7yl2g00npnkk2zk14xj"; depends=[mice ranger]; }; Rfacebook = derive2 { name="Rfacebook"; version="0.6.15"; sha256="0hp2mbm0hnyasizszvh5x9hv7z2q633zck1a1gvk36nbxb1shx7c"; depends=[httpuv httr rjson]; }; Rfast = derive2 { name="Rfast"; version="1.9.9"; sha256="18m8xhg24kygwhq7avdp1hibilicb5wppi2wdmc36fkqljc274y0"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; Rfast2 = derive2 { name="Rfast2"; version="0.0.5"; sha256="07w0ypwy19cqf4h94pzh0y8fmq5ibr048qzarrs1qzlnk2hx7k4c"; depends=[Rcpp RcppArmadillo Rfast]; }; Rfit = derive2 { name="Rfit"; version="0.24.2"; sha256="1b3pza2xdpifvrcqbdp5r2wy82ws1844bnpna01hqj65xbw2iix8"; depends=[]; }; Rfolding = derive2 { name="Rfolding"; version="1.0"; sha256="15lf73zxr1slin9faj9k0z8qkb1g9nb7h080nfv99gsi2ks68ssg"; depends=[]; }; + Rfractran = derive2 { name="Rfractran"; version="1.0"; sha256="0cwc069f7rhkxkr5kn0n43mdy8m47gh0q6d5ijwzkhncrijb10cy"; depends=[gmp]; }; Rfssa = derive2 { name="Rfssa"; version="1.0.0"; sha256="0rmlx1fia0758kbqpi56awh7xws5pwx6zl8nnggi6bqalyskf09n"; depends=[dplyr fda lattice markdown plotly Rcpp RcppArmadillo Rssa shiny]; }; Rga4gh = derive2 { name="Rga4gh"; version="0.1.1"; sha256="0h5y722blkkwn6ask6vjnhl22v9l6511chdm50ig6xcs5dvjam2m"; depends=[httr jsonlite]; }; Rgb = derive2 { name="Rgb"; version="1.6.1"; sha256="0qs3dlv4g45dqphqjm23ky3w6rxh8ff2q6b17kvf57skyf1b1yn8"; depends=[]; }; @@ -3856,8 +3958,7 @@ in with self; { Rglpk = derive2 { name="Rglpk"; version="0.6-4"; sha256="19mzpyimzq9zqnbi05j79b2di3nzaln8swggs9p8sqdr60qvr3d2"; depends=[slam]; }; RgoogleMaps = derive2 { name="RgoogleMaps"; version="1.4.5.3"; sha256="02v8k0bw70q4qwx4lcdy8p25q7n3ql2ll46lfpqllxa1p26svmfi"; depends=[png sp]; }; Rhpc = derive2 { name="Rhpc"; version="0.19-276"; sha256="1wbdkqmaq3rdj5r9w0mddkcyiabyd9r26jp3i7i4w055mq2r1gs1"; depends=[]; }; - RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.20-17"; sha256="0iwc06blr5sx7rylwczi2jrha8sk8qs0jklflwpidl0zj1jxdggp"; depends=[]; }; - Ricetl = derive2 { name="Ricetl"; version="0.2.5.1"; sha256="1d7229ylnxgh2rvarwga229378ja79l978zjabf3sph4cqc1b965"; depends=[devtools gWidgets gWidgetsRGtk2 plyr readr readxl stringr tidyverse writexl]; }; + RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.20-137"; sha256="0vv144sgjhf7fazk633i16fc06g9k43syyxj1g34pi9gsgdcn0nv"; depends=[]; }; RichR = derive2 { name="RichR"; version="1.0.0"; sha256="0z0ri90jqdmw0vwxd1b4wr9if5cgm1gqpf6g9p1fdvncf4sdi9by"; depends=[magrittr metap plyr reshape2]; }; RidgeFusion = derive2 { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; }; Ridit = derive2 { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; }; @@ -3866,7 +3967,7 @@ in with self; { RiemGrassmann = derive2 { name="RiemGrassmann"; version="0.1.0"; sha256="05dann9sdkdzmjp8jalxb963x42j7w007dk7vgkfngm62z6dr24v"; depends=[Rcpp RcppArmadillo RiemBase RiemBaseExt]; }; RiemStiefel = derive2 { name="RiemStiefel"; version="0.1.1"; sha256="1sdib0xih81n059gi207q01gfb1ac1n02dsyq0qrdqnz1bhffk69"; depends=[Rcpp RcppArmadillo Rdpack RiemBase RiemBaseExt]; }; Riex = derive2 { name="Riex"; version="1.0.1"; sha256="1jri01s08g819bvw0bgd5z5iaf9rlikkqq993lm0455k909wm34v"; depends=[dplyr ggplot2 httr purrr quantmod rjson stringr tibble tidyr tidyverse TTR urltools xts zoo]; }; - Rilostat = derive2 { name="Rilostat"; version="1.0.1"; sha256="0k8x2z3vxfwbynn22wpkfbc1i237bl61dh612nhw19c7v48lhdgg"; depends=[data_table dplyr DT haven plyr RCurl readr stringr tibble xml2]; }; + Rilostat = derive2 { name="Rilostat"; version="1.1"; sha256="0a4bnp0a78a4yflxc535h0pajr4xaclfagx2f527p5ch5k23z2l6"; depends=[data_table dplyr DT haven plyr RCurl readr stringr tibble xml2]; }; Rinstapkg = derive2 { name="Rinstapkg"; version="0.1.0"; sha256="0fvj4jc00g5b8cc4mrsjj72fdcdmvlky05s2ca0g2gndrjs6vxic"; depends=[digest dplyr httr jsonlite lubridate purrr readr rlang uuid]; }; Rip46 = derive2 { name="Rip46"; version="1.0.2"; sha256="0wfp6fm5mgmjqjkn0c5hvjd95yn4zcv0s8xc5294qf5jqxp8b1w7"; depends=[Rcpp]; }; Rirt = derive2 { name="Rirt"; version="0.0.2"; sha256="0npd2g3a4dh5hlj6l06k1pf0j4731ybqqd4mpi4id16nf81cg104"; depends=[ggplot2 Rcpp reshape2]; }; @@ -3879,46 +3980,52 @@ in with self; { RkMetrics = derive2 { name="RkMetrics"; version="1.3"; sha256="1k6vnr1r4h69iznib638z45gd0f8wc4g4h0ji9f0017883g77li1"; depends=[]; }; Rknots = derive2 { name="Rknots"; version="1.3.2"; sha256="1krhma8hy3l5lbm6d8rxjlj9jw1zrd16h4wy4p1clfa5vlhh3bwi"; depends=[bio3d rgl rSymPy]; }; Rlab = derive2 { name="Rlab"; version="2.15.1"; sha256="1pb0pj84i1s4ckdmcglqxa8brhjha4y4rfm9x0na15n7d9lzi9ag"; depends=[]; }; - Rlabkey = derive2 { name="Rlabkey"; version="2.4.0"; sha256="0iah1b4f4gkyik30v0wrydnqx5g03l1jmkifyyfp03sg5cfvgzfv"; depends=[httr jsonlite Rcpp]; }; + Rlabkey = derive2 { name="Rlabkey"; version="2.5.2"; sha256="14vl0chazs6ghyya6pvmp1xazvw5zy92dldwzkn1psifrv5cb8fh"; depends=[httr jsonlite Rcpp]; }; Rlda = derive2 { name="Rlda"; version="0.2.6"; sha256="0i8n01h9072q339p1kiqhcpwphw0d2x6bsszbhgfqc2b160dk2bl"; depends=[coda doParallel foreach gtools Rcpp RcppArmadillo RcppProgress]; }; Rlgt = derive2 { name="Rlgt"; version="0.1-3"; sha256="0g610v5rch5s31gc7dy9zx4mcgsdhn82y1pmr2rs14qma0v7x515"; depends=[BH forecast Rcpp RcppEigen rstan rstantools sn StanHeaders]; }; Rlibeemd = derive2 { name="Rlibeemd"; version="1.4.1"; sha256="06bb939awawpwn4g63b9jzq5b658lsznzy272zl0fy19x62c6bwr"; depends=[Rcpp]; }; Rlinkedin = derive2 { name="Rlinkedin"; version="0.2"; sha256="15sbiis1d0s466nqk1adjhflb01sb9kn25f4y6sagkdggvyz6b56"; depends=[httpuv httr XML]; }; - Rlinsolve = derive2 { name="Rlinsolve"; version="0.3.0"; sha256="1kvlpfrw4w2dykpdym9sg6h2ghavnm7lwxn6bzqldwg53wlinvxk"; depends=[BH bigmemory Matrix Rcpp RcppArmadillo Rdpack]; }; - Rlof = derive2 { name="Rlof"; version="1.1.1"; sha256="1px6ax2mr2agbhv41akccrjdrvp8a9lmhymp0cn8fjrib0ig8vql"; depends=[doParallel foreach]; }; + Rlinsolve = derive2 { name="Rlinsolve"; version="0.3.1"; sha256="1x02xxbkchcwwfa2123n9yqfzinfi0zba8zxhp977czzwysy75cc"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; }; + Rlof = derive2 { name="Rlof"; version="1.1.2"; sha256="0qhckcnhpzdm0035irip0lngbwxwiaanqf41lkrgkiyapymkfbxg"; depends=[doParallel foreach]; }; Rmagic = derive2 { name="Rmagic"; version="2.0.3"; sha256="0g2f887v820rjyjzcahfrnjvif8iwbhnfnjpd4ib3d9lps69agx1"; depends=[ggplot2 Matrix reticulate]; }; Rmalschains = derive2 { name="Rmalschains"; version="0.2-6"; sha256="1dp0nys320i7pa7c0smz57vj6jk7wjvrnnn90z5w7m6xdb4rm369"; depends=[Rcpp]; }; RmarineHeatWaves = derive2 { name="RmarineHeatWaves"; version="0.17.0"; sha256="09lrrxnkkfnbidnmag1czx2xzssdl09348nkc6pqgq6xz36a3mqc"; depends=[dplyr ggplot2 lazyeval lubridate plyr raster rlang tibble tidyr zoo]; }; + Rmbal = derive2 { name="Rmbal"; version="0.1.0"; sha256="1zk769gks2dy5nvfmmjf8bz6k1rg2kfkdhykgclb9kwk5b1b9pm0"; depends=[gsl magrittr minpack_lm pracma Rdpack]; }; RmecabKo = derive2 { name="RmecabKo"; version="0.1.6.2"; sha256="1i08wlfd14wmvwrsvjyhgzxkwzfp4jiwbzymw8m25pvyjxgi7jmy"; depends=[Rcpp stringr]; }; Rmisc = derive2 { name="Rmisc"; version="1.5"; sha256="1ijjhfy3v91fspid77rrkc5dkcb2lav37wc3f4k5lwrn24wzy5y8"; depends=[lattice plyr]; }; - Rmixmod = derive2 { name="Rmixmod"; version="2.1.2.2"; sha256="1kfhaj47igcjs3h22slk8jywq85kbm5rnj4c1jhrp03hyzy2vg0v"; depends=[Rcpp RcppEigen]; }; + Rmixmod = derive2 { name="Rmixmod"; version="2.1.5"; sha256="0cl0bl7554abjwz2as8gqvrzqswlw5727dac5302p7ksy3id9a1j"; depends=[Rcpp RcppEigen]; }; RmixmodCombi = derive2 { name="RmixmodCombi"; version="1.0"; sha256="0cwcyclq143938wby0aj265xyib6gbca1br3x09ijliaj3pjgdqi"; depends=[Rcpp Rmixmod]; }; Rmosek = derive2 { name="Rmosek"; version="1.3.5"; sha256="18q39n2p3gms9zqrl8g15rjjk4v64365v0rm8r7zvvivh1hy5xa0"; depends=[]; }; Rmpfr = derive2 { name="Rmpfr"; version="0.8-1"; sha256="09kw7hyca8xc09r2d88qj81cclar8acaq5q9q5rw9f49iffda0rr"; depends=[gmp]; }; Rmpi = derive2 { name="Rmpi"; version="0.6-9"; sha256="1rhycla98hxgnnxlxxldr1x51djak7c2jjvlrv3jcsvgwp1ymqdj"; depends=[]; }; Rmst = derive2 { name="Rmst"; version="0.0.3"; sha256="1fykpii17k460qlsjhhh5vag02lhkyk5l3zjmg8hifqp0cjhz2fl"; depends=[ggplot2 Rata reshape2 Rirt]; }; RnavGraphImageData = derive2 { name="RnavGraphImageData"; version="0.0.4"; sha256="1k1gnkghap878fck0bbz9mm0fr4cli6lh1d11r0cf47fvl6cc4gr"; depends=[]; }; + Rnightly = derive2 { name="Rnightly"; version="0.1.0"; sha256="08sb4ic7my8b6xcjn9vim8wp4z3kvk0gyp604dg1az7czc7ics5r"; depends=[glue htmltools]; }; Rnmr1D = derive2 { name="Rnmr1D"; version="1.2.5"; sha256="0z97pmkksma225s948r0myd4638cy8vl1x2244w1r6n0cybymnd9"; depends=[base64enc doParallel foreach ggplot2 igraph impute MASS MassSpecWavelet Matrix plotly plyr ptw Rcpp signal speaq XML]; }; Rnumerai = derive2 { name="Rnumerai"; version="2.1"; sha256="1f16fp9gzcaz3ad7iyw10n8jrnmnhxygn00mrcg582jz62dih9bd"; depends=[dplyr ggplot2 httr lubridate purrr tidyr]; }; + RoBMA = derive2 { name="RoBMA"; version="1.0.4"; sha256="0zd18d2zlh9pcwpmz2y5v5gp6lrsgj2cyrz2cg8d26lr0dvgwhp2"; depends=[BH bridgesampling callr coda DPQ extraDistr psych Rdpack rjags runjags scales]; }; RobAStBase = derive2 { name="RobAStBase"; version="1.2.1"; sha256="0dn93bcyz9kxbj38sc1wisfa6v0666v9gk6y3zq0ihjkkhkmdwq3"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; }; RobAStRDA = derive2 { name="RobAStRDA"; version="1.2.0"; sha256="1s84j5in4av9zbbszv8j2rpigrd9ws9h4hz64jw7xagsj3xb49kz"; depends=[]; }; RobExtremes = derive2 { name="RobExtremes"; version="1.2.0"; sha256="150p94f0g75g54qcaq4x45lk4sxiyvv1zs4hxkicf46raybvsv89"; depends=[actuar distr distrEx distrMod evd RandVar RobAStBase RobAStRDA robustbase ROptEst startupmsg]; }; - RobGARCHBoot = derive2 { name="RobGARCHBoot"; version="1.0.0"; sha256="0m739ix7qj89ppz3k87pc5rgiasmgii467l95clkn6wschfnpfgx"; depends=[Rcpp RcppArmadillo]; }; + RobGARCHBoot = derive2 { name="RobGARCHBoot"; version="1.0.1"; sha256="1zybpvxp0jj15vvwj3s5adh62fijmdq3nhxl7xapigdc6qaskiv1"; depends=[Rcpp RcppArmadillo]; }; RobLox = derive2 { name="RobLox"; version="1.2.0"; sha256="1lcylkskfidg576lqfi84l14rvrpfbzmr53hcgzzmfipxhli4dr8"; depends=[Biobase distr distrMod lattice RandVar RColorBrewer RobAStBase]; }; RobLoxBioC = derive2 { name="RobLoxBioC"; version="1.2.0"; sha256="01lydp67v7mc4v3svsnl4zqq2jy1czwg9l9blngjn9ky0hv3haf5"; depends=[affy AnnotationDbi beadarray Biobase BiocGenerics distr distrMod lattice RColorBrewer RobLox]; }; - RobMixReg = derive2 { name="RobMixReg"; version="0.1.0"; sha256="171kwgfxmnwsrhjy3bwl6sl4z8nw9cx588a3snavpvsl7kwdlmmr"; depends=[flexmix gtools MASS robustbase]; }; + RobMixReg = derive2 { name="RobMixReg"; version="1.1.0"; sha256="13w6zvncwh561wzzqy548x0w25rnzf0pfvi5cc6mzn71x5l7cmh2"; depends=[dplyr flexmix glmnet gplots gtools lars MASS RColorBrewer rlang robust robustbase scales]; }; RobPer = derive2 { name="RobPer"; version="1.2.2"; sha256="0631qfpz61606r50vzn7b3h7arfwxcs8j13q1hg779qx60kwrliy"; depends=[BB quantreg rgenoud robustbase]; }; RobRSVD = derive2 { name="RobRSVD"; version="1.0"; sha256="07z5fw8j5lq7nyxgkvb9i4iwb5inddz2ib4m2bjx6q4c1ricpqz9"; depends=[]; }; RobRex = derive2 { name="RobRex"; version="1.2.0"; sha256="1npgbdvdzb0p0w77fsngrwg968y621p3lx8qw69ns8qgxjkismqp"; depends=[distr RandVar RobAStBase ROptRegTS]; }; RobStatTM = derive2 { name="RobStatTM"; version="1.0.2"; sha256="14fnz01n0dd0qdlnd9vcqqj0xzfn8av8fvsy2ay0lk22ma3jw83v"; depends=[DEoptimR DT fit_models ggplot2 gridExtra PerformanceAnalytics pyinit robustbase rrcov shiny shinyjs xts]; }; - RobinHood = derive2 { name="RobinHood"; version="1.2.4"; sha256="00riiz1csxmncsd79xj85bl5vbhyp8vj43b2s7wc3zhq0d89kizc"; depends=[dplyr httr jsonlite lubridate magrittr profvis uuid]; }; + RobinHood = derive2 { name="RobinHood"; version="1.4"; sha256="02dlq6bmd5466kd7pjvkmsa5931gi0bcjda8ckbpdzqfv6bmbd0c"; depends=[dplyr httr jsonlite lubridate magrittr profvis uuid]; }; Robocoap = derive2 { name="Robocoap"; version="0.1-1"; sha256="0aj6iv85a1zfaknjhrzf6lnf0qn726dvnj4dywg9nii1kkqrkq2w"; depends=[data_table igraph markovchain tm]; }; RobustAFT = derive2 { name="RobustAFT"; version="1.4-5"; sha256="1i119qqlavfj7k0srb8fbbyy2nhsjv9rgrni854liizr9m51cgac"; depends=[robustbase survival]; }; + RobustBayesianCopas = derive2 { name="RobustBayesianCopas"; version="1.0"; sha256="1l6rp3b65927nx2z2xqk6rf1k75fbnflapdjvkq81i9bhwl5q1i5"; depends=[rjags statip]; }; RobustCalibration = derive2 { name="RobustCalibration"; version="0.5.1"; sha256="0wsnvryvrl37acljrda2dm1d8aynqiy66yd2i857m035whixfpqa"; depends=[Rcpp RcppEigen RobustGaSP]; }; - RobustGaSP = derive2 { name="RobustGaSP"; version="0.5.7"; sha256="1zjil79a5zwi51bsrifplj2yyxpqg4v9471bsclwzyzll24c46vk"; depends=[nloptr Rcpp RcppEigen]; }; + RobustGaSP = derive2 { name="RobustGaSP"; version="0.6.0"; sha256="08f5kkpxv87b00cdbyr401khgbx8n0jp24lqj1kpj0ij7apbncss"; depends=[nloptr Rcpp RcppEigen]; }; + RobustLinearReg = derive2 { name="RobustLinearReg"; version="1.2.0"; sha256="06137f516gyj64qdmwby7m1xnvj4hxzpqj454jn0xcinvl89380w"; depends=[]; }; RobustRankAggreg = derive2 { name="RobustRankAggreg"; version="1.1"; sha256="1pslqyr1lji1zvcrwyax4zg2s81p1jnhfldz8mdfhsp5y7v8iar3"; depends=[]; }; RockFab = derive2 { name="RockFab"; version="1.2"; sha256="1b5mhfll5vmqwl4pblmclyx9604vn07jyza02rm0jcsx915ms8sc"; depends=[EBImage rgl]; }; Rodam = derive2 { name="Rodam"; version="0.1.6"; sha256="1204zj556xciw29bn2dzndv7dfmmvdhyj5r5slgfzhsxyx0ca4i2"; depends=[RCurl]; }; + RolWinMulCor = derive2 { name="RolWinMulCor"; version="0.4.0"; sha256="1i7vnw0v7h0z5ya5g6vxnanv30pn7pxiy4c6x5s1biba2vy65gz9"; depends=[colorspace gtools pracma zoo]; }; RonFHIR = derive2 { name="RonFHIR"; version="0.4.0"; sha256="1ajpgpp300m0zzqzzwsn8sfy8x751hrr8py9n9xvzjmkgyrh4hhw"; depends=[httr jsonlite R6 stringr]; }; Rook = derive2 { name="Rook"; version="1.1-1"; sha256="00s9a0kr9rwxvlq433daxjk4ji8m0w60hjdprf502msw9kxfrx00"; depends=[brew]; }; RootsExtremaInflections = derive2 { name="RootsExtremaInflections"; version="1.2.1"; sha256="0qd6cmzp8fkb75ac79xbh4032vqwax7nk7d6yykpdbn0bnk2kvdi"; depends=[doParallel foreach inflection iterators]; }; @@ -3932,17 +4039,19 @@ in with self; { Rpdb = derive2 { name="Rpdb"; version="2.3"; sha256="0zy5f7bli6ppc9giwf8845mzjcv54r2sqb8hxwgbn9k6rjlszgi8"; depends=[rgl]; }; RpeakChrom = derive2 { name="RpeakChrom"; version="1.1.0"; sha256="1r8f6knpz83arz2kabizx5yyh1myg0h310qlwh8rmy88cdxi1ps9"; depends=[ggplot2 minpack_lm pracma ptw]; }; Rphylip = derive2 { name="Rphylip"; version="0.1-23"; sha256="0kpqmik4bhr74ib8yvaavr10z4v4w3li5vibdhz7lvz35jfirg9r"; depends=[ape]; }; - Rphylopars = derive2 { name="Rphylopars"; version="0.2.12"; sha256="0a3cpyw7fgfklwzzy77sm3brfdha4p9021jaaa2s2hknpr9c1fmp"; depends=[ape doBy geiger MASS Matrix mvnmle phylolm phytools Rcpp RcppArmadillo]; }; + Rphylopars = derive2 { name="Rphylopars"; version="0.3.0"; sha256="0s7rlkqfjz46yz2lyyxhdla0xl3maxjyp168anizn84qzcgchmxz"; depends=[ape doBy geiger MASS Matrix phylolm phytools Rcpp RcppArmadillo]; }; Rpoet = derive2 { name="Rpoet"; version="1.1.0"; sha256="11gp4zg0wc2a21956355rkr3i3dyaabfz0z30z4phn8s7y3yqr92"; depends=[]; }; Rpolyhedra = derive2 { name="Rpolyhedra"; version="0.4.2"; sha256="0q50f0pp72rwmflxwnridjrcl649kz5h2fm8jfz2pn473mghhya8"; depends=[digest dplyr futile_logger geometry git2r R6 rgl stringr testthat XML]; }; Rpoppler = derive2 { name="Rpoppler"; version="0.1-0"; sha256="19nvv45ahp0c241p1xzlq0sq5qarqg66jw5f1anhqnfi2hi91hcm"; depends=[]; }; Rprofet = derive2 { name="Rprofet"; version="2.2.1"; sha256="150123vxdd31p96f3vsri46ryfng2xvnjgm6mdiqczg48xyfpbdp"; depends=[binr ClustOfVar ggplot2 gridExtra plyr sqldf stringr]; }; + Rpvt = derive2 { name="Rpvt"; version="0.1.1"; sha256="0ggd6ikp2s9z4086y8w3qzb9jcyyqpby41p3ayjwam94skh154mf"; depends=[Rcpp RcppArmadillo Rdpack]; }; Rquake = derive2 { name="Rquake"; version="2.4-0"; sha256="14s2mjq9qqxfvlwmq9126h67y5wr7irlc7945pgv1ab9hl1lgmz8"; depends=[GEOmap MBA minpack_lm rgl RPMG RSEIS]; }; Rquefts = derive2 { name="Rquefts"; version="1.0-7"; sha256="1r1b2ga7kfhxsgr2d6ncfyrcpwx1jy0q1h06xajhfpd7i2sk7i84"; depends=[meteor Rcpp]; }; Rramas = derive2 { name="Rramas"; version="0.1-6"; sha256="16aapvz9j81lvi5ryj41bvn3wf51b0gynnzs0jpvva4m3mvzw6an"; depends=[diagram]; }; - Rraven = derive2 { name="Rraven"; version="1.0.9"; sha256="00iwjwqwjam45zcsggckdaqcd6sygh8ysahpvrx7xg4h5rdnhg92"; depends=[NatureSounds pbapply seewave tuneR warbleR]; }; + Rraven = derive2 { name="Rraven"; version="1.0.10"; sha256="1b0av1pwg6n6rbl5k6md8knjqamismd8wbx7hnlkmak8q1yzk282"; depends=[NatureSounds pbapply seewave tuneR warbleR]; }; Rrdrand = derive2 { name="Rrdrand"; version="0.1-16"; sha256="0j9yyvq8r1cgwj3kw1ak6hyazr67f2q0c1m651wdm0wcvm1ajx7f"; depends=[]; }; - Rsagacmd = derive2 { name="Rsagacmd"; version="0.0.5"; sha256="06mgynndkm0syzqxryvjcjcjcd7a9fcwq2v1r2qq5073har6r1iy"; depends=[foreign magrittr minpack_lm raster rgdal rlang sf stringr tibble XML]; }; + Rrelperm = derive2 { name="Rrelperm"; version="0.1.0"; sha256="0cjw91j1sgc27wbx1dcdqk8j4hjkamp3wav78sh4ncdlvkyyz4p0"; depends=[nleqslv Rcpp RcppArmadillo Rdpack]; }; + Rsagacmd = derive2 { name="Rsagacmd"; version="0.0.9"; sha256="19kpdq7x70fs4xd09lslpwclwmclc189hl8lpcycf80q74cm2r55"; depends=[foreign magrittr minpack_lm raster rgdal rlang sf stringr tibble XML]; }; Rsampletrees = derive2 { name="Rsampletrees"; version="1.0.3"; sha256="1qnvnhhzhyfbka4zjblddj5ad5d6q7rzb8rpikzpvcqn9s57lnqk"; depends=[ape haplo_stats Rcpp]; }; Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; }; Rsconctdply = derive2 { name="Rsconctdply"; version="0.1.3"; sha256="12xc1laxgivv4szp8341pvhmxnzzzzc2s4jhnqsqrbx71lbd9szg"; depends=[dplyr rjson rsconnect]; }; @@ -3950,7 +4059,6 @@ in with self; { RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.3"; sha256="0jlzrs9xxlpazvq3iw8znk0bd00bzlry7bgxsxq7xl23akizj0ji"; depends=[fields jpeg RANN]; }; Rsmlx = derive2 { name="Rsmlx"; version="2.0.2"; sha256="1r0z3k6ib7nkbi0v2h07srdpqkpnhhg3si82nnb8x7j23da7hxbs"; depends=[ggplot2 gridExtra MASS]; }; Rsolnp = derive2 { name="Rsolnp"; version="1.16"; sha256="0w7nkj6igr0gi7r7jg950lsx7dj6aipgxi6vbjsf5f5yc9h7fhii"; depends=[truncnorm]; }; - Rsomoclu = derive2 { name="Rsomoclu"; version="1.7.5.3"; sha256="1l1kvr92n0pd6rkr663701lpz81mf0i4hpf80ssd27773m6yw0kg"; depends=[kohonen Rcpp]; }; Rspc = derive2 { name="Rspc"; version="1.2.2"; sha256="1cnzqpnh009wfs51dc4id9q3giaa8b6dc75b1lhzpwcvw0cxcy4y"; depends=[]; }; Rspotify = derive2 { name="Rspotify"; version="0.1.2"; sha256="1q8ajjx5ghlgxgch9gifvhi2gmsi0ph8pygwrb9jrd3ijahlw5k4"; depends=[dplyr httr jsonlite magrittr plyr]; }; RsqMed = derive2 { name="RsqMed"; version="0.1.7.1"; sha256="18r78svwbnri5283s5nxg4vrp29r6xx13h0n6w634jdpwaiw56gk"; depends=[GMMAT SIS]; }; @@ -3959,14 +4067,13 @@ in with self; { Rsymphony = derive2 { name="Rsymphony"; version="0.1-28"; sha256="02x54ygbcd2600prcww1l9pb02skn96rj0jdljpky1228jbib4nx"; depends=[]; }; Rtauchen = derive2 { name="Rtauchen"; version="1.0"; sha256="09282k6qsjxgm26682npfjymmbx5g8flcc44awmkjl2k4fa1q9ha"; depends=[]; }; Rtnmin = derive2 { name="Rtnmin"; version="2016-7.7"; sha256="0f8ii87v29v61b93hx2yxdppp3nvgnl5imp80sbb4bjsdg0mf989"; depends=[]; }; - Rtrack = derive2 { name="Rtrack"; version="0.9.6"; sha256="00xbgfv5a02f05pwlrn3v93ydi3xsil9hznj4rjisf0mc2pmzfj0"; depends=[crayon KernSmooth openxlsx pbapply randomForest raster readxl rgeos rjson sp]; }; + Rtrack = derive2 { name="Rtrack"; version="1.0.0"; sha256="01xgbz37rsbjkix9nlx64qyimsbbgsmyswcv4jbpqasvkp6d480q"; depends=[crayon Hmisc KernSmooth openxlsx pbapply randomForest raster readxl rgeos rjson sp]; }; Rtsne = derive2 { name="Rtsne"; version="0.15"; sha256="0v17vxizrs1msay24xl2bckfajr2c82wpqj07lyssbrq197nwdsn"; depends=[Rcpp]; }; Rttf2pt1 = derive2 { name="Rttf2pt1"; version="1.3.8"; sha256="0b3f2zkmbyshn19cnaaf042d0zwf43l9jnkqizfhxxwb93a4c1jn"; depends=[]; }; RtutoR = derive2 { name="RtutoR"; version="1.2"; sha256="19wmi30b5i6zj673d76gxl6j0k3ppfyl5fqrcs0dwmmadrrvbajq"; depends=[colourpicker devtools dplyr DT FSelector ggplot2 ggthemes officer plotly rlang rmarkdown shiny shinyBS shinydashboard shinyjs tidyr]; }; Rtwalk = derive2 { name="Rtwalk"; version="1.8.0"; sha256="0zxf66lsfq8by40flv34xzd5yy0wa1ah9li1d0h7f0yh9nbwhxl5"; depends=[]; }; Runiversal = derive2 { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; }; Runuran = derive2 { name="Runuran"; version="0.30"; sha256="1a3z49nrx1azbm4blqcwwcbwnxcrcr8md350viakl8a0b3y2v59q"; depends=[]; }; - RunuranGUI = derive2 { name="RunuranGUI"; version="0.3"; sha256="1h2bcc443z8vp4hjf4vss4ds5n6zc6x70kmw13b2431f56jq12fa"; depends=[cairoDevice gWidgets gWidgetsRGtk2 RGtk2 Runuran rvgtest]; }; Rvcg = derive2 { name="Rvcg"; version="0.19.1"; sha256="0brqnvhqj9052kkic1i8mxx7y1si9na5rwj1fmslsf5mih8n4grr"; depends=[Rcpp RcppArmadillo RcppEigen]; }; Rvmmin = derive2 { name="Rvmmin"; version="2018-4.17"; sha256="0mhzzwk311wa157l3n4x5x038asvjd81l45g1jclfsjr0smsffym"; depends=[optextras]; }; Rvoterdistance = derive2 { name="Rvoterdistance"; version="1.1"; sha256="16il36hkq1j6gyl5d8bx5khiiv6fy2m8vkhwiaaiqsliw2sspy4j"; depends=[Rcpp]; }; @@ -3978,7 +4085,7 @@ in with self; { RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-4"; sha256="0qyhxqd5yi4d1prj0i4g3k29zi0mx6wkjx24ynb4arxw6h1vabh4"; depends=[coda lattice MASS MCMCpack mvtnorm]; }; RxODE = derive2 { name="RxODE"; version="0.9.2-0"; sha256="1ynn38wk08szi34pk0hmlnanmfg19arazsqzafyw5kd1v3fdx4g4"; depends=[assertthat brew cli dparser ggplot2 inline knitr lotri magrittr Matrix memoise mvnfast pillar PreciseSums Rcpp RcppArmadillo rex sys units]; }; RxnSim = derive2 { name="RxnSim"; version="1.0.3"; sha256="0fi4aic2brfbl6rsnnfwqq7l8ygvlmr98w0v749l3djpgn7sfrig"; depends=[data_table fingerprint rcdk rJava]; }; - Rxnat = derive2 { name="Rxnat"; version="1.0.8"; sha256="12xcs2l6vn50bwzfmv60j1qahjw2npfm1a3yjhffcxzh6p8chwbg"; depends=[httr RCurl]; }; + Rxnat = derive2 { name="Rxnat"; version="1.0.12"; sha256="06w99b5lvpycykzlga6grw33zkajwbb04s89s37wy9zxy42vc4cb"; depends=[dplyr httr RCurl]; }; Ryacas = derive2 { name="Ryacas"; version="1.1.3"; sha256="12vkylq06c7kqvvf662cyzhdcnpy928xsjflf1kf0nh6y00gywf8"; depends=[magrittr Rcpp]; }; Ryacas0 = derive2 { name="Ryacas0"; version="0.4.2"; sha256="0k8q9v9016x8vfskwa6zmh2rbblqqfk8bryxslxaj8irzvkggnvl"; depends=[Rcpp settings xml2]; }; S2sls = derive2 { name="S2sls"; version="0.1"; sha256="0qq1rff2cdgrm5rj69jxgrl71i0wmzyn424fdvcg02zdv9ggqhd3"; depends=[spanel]; }; @@ -3995,10 +4102,10 @@ in with self; { SAMM = derive2 { name="SAMM"; version="1.1.1"; sha256="175jk3s9w68ccw1h019380lp9cajfsy3zigcnplp87pcn3qg7x2i"; depends=[Rcpp RcppArmadillo]; }; SAMUR = derive2 { name="SAMUR"; version="0.6"; sha256="0iyv7ljjrgakgdmpylcxk3m3xbm2xwc6lbjvl7sk1pmxvpx3hhhc"; depends=[Matching]; }; SAMURAI = derive2 { name="SAMURAI"; version="1.2.1"; sha256="02fipbjcsbp2b2957x6183z20icv1yly2pd1747nyww9bmpa7ycm"; depends=[metafor]; }; - SAPP = derive2 { name="SAPP"; version="1.0.7"; sha256="0rms9kq87dypdfs248m4393lgpfx37qah0n1s109pfnjh3k64pm3"; depends=[]; }; + SAPP = derive2 { name="SAPP"; version="1.0.8"; sha256="1lb148s8rdx1phmx8ihncgb45iqxzracxznys7zyzs8qcf6hm5wq"; depends=[]; }; SAR = derive2 { name="SAR"; version="1.0.1"; sha256="0i6ffssr5iyh4z1ygbg0kg2nq4mlvshym7380f93gf85wpdql5gv"; depends=[AzureRMR AzureStor dplyr httr jsonlite Matrix R6 Rcpp RcppArmadillo RcppParallel]; }; SARP_compo = derive2 { name="SARP.compo"; version="0.1.3"; sha256="1rps2zfwhxf579v29p929jh1qq71ayy1ij6a5ja6y8rdflzhp4hb"; depends=[car igraph]; }; - SARP_moodle = derive2 { name="SARP.moodle"; version="0.3.10"; sha256="0wi6b25cd47kgj09pmfxf1hjsyqnhwj2liyv8f5nfxl9wzkdsxc5"; depends=[]; }; + SARP_moodle = derive2 { name="SARP.moodle"; version="0.8.1"; sha256="1aszwnyg1nisyz1h75j4zn4b276n83l5wyldf2iysjcb45hir2kl"; depends=[base64enc]; }; SASPECT = derive2 { name="SASPECT"; version="0.1-1"; sha256="1d3yqxg76h9y485pl5mvlx6ls1076f80b320yvx4zxmqq9yxmaba"; depends=[]; }; SAScii = derive2 { name="SAScii"; version="1.0"; sha256="0nq859xmrvpbifk8q1kbx3svg61rqdg8p8gr1pn85fr0j3w7h666"; depends=[]; }; SASmarkdown = derive2 { name="SASmarkdown"; version="0.4.3"; sha256="0jc21ylflvv4snik13731acxh9zw79s7hpswk58p2wzvavq8k9zn"; depends=[knitr]; }; @@ -4007,9 +4114,11 @@ in with self; { SAVE = derive2 { name="SAVE"; version="1.0"; sha256="1m9rrga8x00hlvn0c1jcz6yz14pdm6h3dq14905mq49sw63c7zll"; depends=[coda DiceKriging]; }; SAVER = derive2 { name="SAVER"; version="1.1.2"; sha256="1s1kw8idkaj7j90fw4qn9k0wd4vz0sblsk06ry6lm4afcar0p158"; depends=[doParallel foreach glmnet iterators Matrix]; }; SAutomata = derive2 { name="SAutomata"; version="0.1.0"; sha256="0d9q7bm2f7s4aslml40n43vwcdkc8rnn9ygydccwi4b9a7y23k58"; depends=[]; }; + SBMSplitMerge = derive2 { name="SBMSplitMerge"; version="1.1.1"; sha256="1h44qwz9gkwwgkac25h4vn0kq3mjvjsyq99yfd8v8g6g8fkkclaq"; depends=[ggplot2 reshape2 scales]; }; SBRect = derive2 { name="SBRect"; version="0.26"; sha256="16g0ciy9q9irypsl8x36i0lavl41j3af13r2si0by8q6wj56pxi4"; depends=[rJava]; }; SBSA = derive2 { name="SBSA"; version="0.2.3"; sha256="1v23lzzziyjlvgn5p2n1qcq2zv9hsyz2w15lbnfi5wvinxhlg8sc"; depends=[Rcpp RcppArmadillo]; }; SBSDiff = derive2 { name="SBSDiff"; version="0.1.0"; sha256="0mw1646dmhxw6zz4pq7j0g3mf9bjn72g43sq7m72r8ma8ciqj7r2"; depends=[]; }; + SBdecomp = derive2 { name="SBdecomp"; version="1.0"; sha256="0352pa2l3b3gylkvv1v62vk0b2djy0cyi4d4ps1r4dwilpir69d5"; depends=[survey twang]; }; SBmedian = derive2 { name="SBmedian"; version="0.1.0"; sha256="1flydpajgak0sh6v8r67fvjg3fjaylinqjgfrvi91lf29r822zdw"; depends=[expm Rcpp RcppArmadillo Rdpack]; }; SCAT = derive2 { name="SCAT"; version="0.5.0"; sha256="16dh4l5r8b49n68s571npmk14dnnx6y0np7lzvalg61z31zlya29"; depends=[]; }; SCBiclust = derive2 { name="SCBiclust"; version="1.0.0"; sha256="1wrlzgavri6g7s948775nfls83b8fa5mx3xvbvc8kmbrvdwms6cq"; depends=[sigclust sparcl]; }; @@ -4022,9 +4131,10 @@ in with self; { SCI = derive2 { name="SCI"; version="1.0-2"; sha256="1jvzkdv15ifgf6a3zjfzzcgw2y2vg0wp7yhiamiaqp8xkm142w49"; depends=[fitdistrplus lmomco]; }; SCINA = derive2 { name="SCINA"; version="1.2.0"; sha256="1gv9widjwvk5j535r1zx6f41ylpa2r4168ya580llgblx85z402d"; depends=[gplots MASS]; }; SCMA = derive2 { name="SCMA"; version="1.3.1"; sha256="0j0np99mcr8vgpcg664769gdb3rxm665h4jgj3zplihbh5ihxfj1"; depends=[]; }; - SCOR = derive2 { name="SCOR"; version="1.1.0"; sha256="0r462g3wciz0kkvzwnd7660giy16q8bk8chm73syrw4fnfk2vdkv"; depends=[doParallel foreach iterators]; }; + SCOR = derive2 { name="SCOR"; version="1.1.1"; sha256="0srkn72g1v7hwms68pjmq5sj562blqn27gi628q6q6zlirbmfb9g"; depends=[doParallel foreach iterators]; }; SCORER2 = derive2 { name="SCORER2"; version="0.99.0"; sha256="1a28wga69ip9s98ch2dqgl0qkwa3w6frmaqcvhclc360ik813mxq"; depends=[]; }; - SCORPIUS = derive2 { name="SCORPIUS"; version="1.0.6"; sha256="1lrpy96v9wcf143nljrh8md6pr6why22xai59f5k1pvva07rn4vc"; depends=[dplyr dynutils dynwrap ggplot2 lmds MASS Matrix mclust pbapply pheatmap princurve purrr ranger RANN RColorBrewer tidyr TSP]; }; + SCORPIUS = derive2 { name="SCORPIUS"; version="1.0.7"; sha256="1mswjc1q9dj4yvhx1db50iy041mw3azbi40ha3zjp38fflwcwf2z"; depends=[dplyr dynutils dynwrap ggplot2 lmds MASS Matrix mclust pbapply pheatmap princurve purrr ranger RANN RColorBrewer reshape2 tidyr TSP]; }; + SCOUTer = derive2 { name="SCOUTer"; version="1.0.0"; sha256="1s0mmzfz0zhr5v4wagcjwdba8a5f57xr26vwml92dnw6lai37pj4"; depends=[ggplot2 ggpubr]; }; SCPME = derive2 { name="SCPME"; version="1.0"; sha256="0yhsaaa349wbrswcvp7w8c52wzp7rs3528rs4wqa8b3r3fh983mh"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; }; SCRSELECT = derive2 { name="SCRSELECT"; version="1.3-3"; sha256="118vwnd5gggvdhq7fbs0553l84vh5mhiag41q4svprd7p0pqd9hd"; depends=[mvtnorm]; }; SCRT = derive2 { name="SCRT"; version="1.3.1"; sha256="0wkxc22hv08riivjl09lhxvffqxxdy4xnvdmc2y69gssyinkbln1"; depends=[]; }; @@ -4036,12 +4146,12 @@ in with self; { SDD = derive2 { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvyrrd5fr2rgyll4cw9p4sd33"; depends=[Hmisc rgl rpanel sm tseries]; }; SDDE = derive2 { name="SDDE"; version="1.0.1"; sha256="14vql1bypn409w9xcx1jdzff6apiagcz2wng3y24h3mk7yjv9bzy"; depends=[doParallel foreach igraph iterators]; }; SDEFSR = derive2 { name="SDEFSR"; version="0.7.21"; sha256="02p46vbyzx5lmyxyhks10l94kz18pldgkxxg2zi5vys80gpy5jd2"; depends=[]; }; - SDLfilter = derive2 { name="SDLfilter"; version="1.2.1"; sha256="1chvg3vh5mwsczbv2ayq9pj1my1i4m2dmr7az1hh00yvlvilfp0y"; depends=[data_table geosphere ggmap ggplot2 ggsn gridExtra maps raster sp trip]; }; + SDLfilter = derive2 { name="SDLfilter"; version="2.0.1"; sha256="0ry7aqcc2ihh2b10xxs0fv4syibwsh1ziynjq6q8wbli4v303kcf"; depends=[data_table dplyr ggmap ggplot2 ggsn gridExtra lubridate maps plotKML plyr pracma raster sp trip]; }; SDMPlay = derive2 { name="SDMPlay"; version="1.3"; sha256="0653yzw00ix1kh302h1fs735956dw0m2zvp2ng472f8qywrb395s"; depends=[dismo gbm raster]; }; - SDMtune = derive2 { name="SDMtune"; version="1.1.0"; sha256="0n876g5ddbnn50py0hgxp1p8ck54553w8aacbap3ylsa3ylz08g5"; depends=[dismo gbm ggplot2 jsonlite maxnet nnet progress randomForest raster Rcpp rstudioapi stringr whisker]; }; + SDMtune = derive2 { name="SDMtune"; version="1.1.1"; sha256="02bpdscfw8ql72sq9nh47qik6xnxczr59yysd18m5mf67qf7p0sb"; depends=[dismo gbm ggplot2 jsonlite maxnet nnet progress randomForest raster Rcpp rlang rstudioapi stringr whisker]; }; SDT = derive2 { name="SDT"; version="1.0.0"; sha256="1jwpfd1pnzy9wcl90qv5bgwi19shsw9064dvml9zwbif8yw8dzjj"; depends=[quadprog]; }; SDaA = derive2 { name="SDaA"; version="0.1-3"; sha256="0z10ba4s9r850fjhnrirj2jgnfj931vwzi3kw9502r5k7941lsx0"; depends=[]; }; - SDraw = derive2 { name="SDraw"; version="2.1.11"; sha256="0l4yxxqsszfzdkr4fbbxrvy29dk0d9fz4rhjmv95ynbmvbx5yqw4"; depends=[covr deldir rgeos sp spsurvey]; }; + SDraw = derive2 { name="SDraw"; version="2.1.13"; sha256="1kx8kfga3zspfdgf9vq2lclszrhf3bfwkfhwqri64kn8fdr34jsq"; depends=[covr deldir rgeos sp spsurvey]; }; SEA = derive2 { name="SEA"; version="1.0"; sha256="1jcjgiy8459d8f603kiipcdq6d2awfcqzdv13hrdjgxpfnd1n1ha"; depends=[data_table doParallel foreach kolmim KScorrect MASS shiny]; }; SEAsic = derive2 { name="SEAsic"; version="0.1"; sha256="1mg01sag6n1qldjvmvbasac86s7sbhi4k99kdkav2hdh6n9jg467"; depends=[]; }; SECFISH = derive2 { name="SECFISH"; version="0.1.7"; sha256="0yd9k6anz9g4psg5kh1bhp0lr1i4y7in1m0mxk4qp14nl1zqy4fy"; depends=[ggplot2 Hmisc optimization]; }; @@ -4053,6 +4163,7 @@ in with self; { SEMID = derive2 { name="SEMID"; version="0.3.2"; sha256="0v1zrx5xxramsg2zzk7b2fyv6kky7xb1q1cg8vi6zg6ln9vgm2dk"; depends=[igraph R_methodsS3 R_oo R_utils]; }; SEMModComp = derive2 { name="SEMModComp"; version="1.0"; sha256="1za67470f13z8jsy3z588c7iiiz993d3vjqrb8v9fann2r6sf1md"; depends=[mvtnorm]; }; SEMrushR = derive2 { name="SEMrushR"; version="0.1.0"; sha256="19prwbh429ra69nz3nx4vzqmb46xssci74rk9mhpnzbi52ycg5gd"; depends=[]; }; + SEMsens = derive2 { name="SEMsens"; version="0.2.6"; sha256="0zqqs5np7z0nh8brxgjx7v3h178hjn29iqzg4rs7dpgqy6pvrdrs"; depends=[lavaan]; }; SETPath = derive2 { name="SETPath"; version="1.0"; sha256="1dpgmki0dhph13h1fd3mbf308746wccgfz5g5gdm7bwbjnmjzd98"; depends=[]; }; SEchart = derive2 { name="SEchart"; version="0.1"; sha256="19gqcd6xzwg37nzc67p88ip4i0v2f59ds85xfw9qq8lybvdm76k2"; depends=[JM]; }; SFS = derive2 { name="SFS"; version="0.1.4"; sha256="1pig64pj30yyfzyv97f74gshw4lnklrx0npp4da3absk6anb3iv7"; depends=[Rcpp RcppArmadillo]; }; @@ -4062,12 +4173,12 @@ in with self; { SGL = derive2 { name="SGL"; version="1.3"; sha256="055mx876ydg4kzvcm6rxfkxqz849zgzkzsskvrfgwj9fs1k6ja2v"; depends=[]; }; SGP = derive2 { name="SGP"; version="1.9-5.0"; sha256="0jsn6fvd5vaw6m6d7l83nphl19xmql4ir50av5x84rsi7qv461gg"; depends=[Cairo callr colorspace crayon data_table digest doParallel doRNG equate foreach gridBase gtools iterators jsonlite matrixStats plotly quantreg randomNames rngtools RSQLite sn toOrdinal]; }; SGPdata = derive2 { name="SGPdata"; version="23.0-0.0"; sha256="0801v5fq18bpy6sqsp1g6g7azi5ldl3xqpkrp19gsfbl4kcfbp3m"; depends=[crayon data_table]; }; - SHAPforxgboost = derive2 { name="SHAPforxgboost"; version="0.0.3"; sha256="09gwjw6pbq9b9fg1nsf2jv6dh2g6nmd5iyq6c8c2imgq0la1khgj"; depends=[BBmisc data_table ggExtra ggforce ggplot2 ggpubr RColorBrewer xgboost]; }; + SHAPforxgboost = derive2 { name="SHAPforxgboost"; version="0.0.4"; sha256="0k6bg27wqnkzv82bcahbapmqhiz6rvnx81m23zbjw58c7lwshgnq"; depends=[BBmisc data_table ggExtra ggforce ggplot2 ggpubr RColorBrewer xgboost]; }; SHELF = derive2 { name="SHELF"; version="1.7.0"; sha256="0rhxagblk8bmwd4wfbjf52dh6y1brajp6xn8rsjx7q0z4brgcr23"; depends=[ggExtra ggplot2 ggridges gridExtra Hmisc MASS rmarkdown scales shiny shinyMatrix tidyr]; }; SHIP = derive2 { name="SHIP"; version="1.0.2"; sha256="0b83cclibdz1r7sz968nmca4najwgps9wrdlsh4gxrl7fq40k4ln"; depends=[]; }; SHT = derive2 { name="SHT"; version="0.1.3"; sha256="016ll3dclnd3arr7x9vvwls84kypqnnm24r9jmcxkk7n8zl0xwb9"; depends=[fastclime pracma Rcpp RcppArmadillo Rdpack]; }; SI = derive2 { name="SI"; version="0.2.0"; sha256="0i6kpaw5yk39skm77nf56ai25clkparz3l8qx0223jrmdqbf97b7"; depends=[]; }; - SIBER = derive2 { name="SIBER"; version="2.1.4"; sha256="1wn69giv6prg9dy10zn2fb63s6a0wqv5maccaf69267anh0s4qpc"; depends=[coda dplyr ellipse ggplot2 hdrcde magrittr mnormt purrr rjags spatstat spatstat_utils tidyr viridis]; }; + SIBER = derive2 { name="SIBER"; version="2.1.5"; sha256="01kx3sdw73pba7c1zj40q9z575x41dji20a5sjpkh5jh1byyxs6j"; depends=[dplyr ggplot2 hdrcde magrittr mnormt purrr rjags spatstat spatstat_utils tidyr]; }; SIBERG = derive2 { name="SIBERG"; version="2.0.2"; sha256="0wfx1dpjd09gb736sm2xhrkba26nwnzn5x575h39n2g33jwqqy2r"; depends=[mclust]; }; SID = derive2 { name="SID"; version="1.0"; sha256="1446zy4rqbw0lpyhnhyd06dzv238dxpdxgmsk34hqv7g3j7q5h1w"; depends=[igraph Matrix pcalg RBGL]; }; SIDES = derive2 { name="SIDES"; version="1.15"; sha256="1s3qxs7rzff6jr05dz6w13k8ziacbwwvc4bm8rgyjs0bry93zdmb"; depends=[doParallel foreach MASS memoise multicool nnet survival]; }; @@ -4075,11 +4186,12 @@ in with self; { SII = derive2 { name="SII"; version="1.0.3.1"; sha256="1xvk04b7725ksfd7h4p7px5zanbf6s7xlmjpb7w0nvbi6km2f7ri"; depends=[]; }; SILGGM = derive2 { name="SILGGM"; version="1.0.0"; sha256="1lhmisgg2zbfksl7czz0fqag3732gkjc44n615ipxbdi2pvnc7m0"; depends=[glasso MASS Rcpp reshape]; }; SILM = derive2 { name="SILM"; version="1.0.0"; sha256="1iaivpdx18djfm5dqak0q9kfl1xfrnx3gk5x9a4y53h1d7jhl9p6"; depends=[glmnet hdi scalreg SIS]; }; + SIMMS = derive2 { name="SIMMS"; version="1.3.0"; sha256="1vnq135sc6f0nn53dmi38as7hzjvifbz3mvhg08zjk2v4rjw8hpw"; depends=[doParallel foreach glmnet MASS randomForestSRC survival]; }; SIN = derive2 { name="SIN"; version="0.6"; sha256="0vq80m3vl8spdnlkwvwy0gk3ziyybqzjp3scnfdcpn942ds7sgg9"; depends=[]; }; SIRE = derive2 { name="SIRE"; version="1.1.0"; sha256="0f624j087k7krg73bqn2qxdgzq66jyhvzz8n024vz3h4hwagxs5n"; depends=[dplyr igraph magrittr MASS Matrix matrixcalc numDeriv psych Rsolnp stringr systemfit]; }; - SIRItoGTFS = derive2 { name="SIRItoGTFS"; version="0.2.4"; sha256="1hyhjwkv26fpplzqrdh41r8j91la5j0jidbwnh2vla6s3wf7jg47"; depends=[data_table dplyr easycsv reshape2 rgdal rgeos sp]; }; SIS = derive2 { name="SIS"; version="0.8-8"; sha256="1f5czwcgpmmn8habm24p3xh4w7jn2faais2x2gmaiq4dpjfnv6h8"; depends=[glmnet ncvreg survival]; }; - SISIR = derive2 { name="SISIR"; version="0.1"; sha256="08lw9y38j5qq00m2vcxsac97lg14j4w1y6607vw8isrb3qb5db9z"; depends=[doParallel expm foreach glmnet Matrix RSpectra]; }; + SISIR = derive2 { name="SISIR"; version="0.1-1"; sha256="13mxw0ad4y29f303zarhhdpw2655ckax1g429grnah07p4kfpkgh"; depends=[doParallel expm foreach glmnet Matrix RSpectra]; }; + SITH = derive2 { name="SITH"; version="1.0.1"; sha256="1g200zc4dbwy7822qhcsi571plm3fpvsdpxipm2ra9zm0x9a4df3"; depends=[Rcpp scatterplot3d]; }; SIfEK = derive2 { name="SIfEK"; version="0.1.0"; sha256="037ps6yfy7w6i8vm0b78c8w9kdmw312dl5nc2qz86rfk8kjg7w27"; depends=[MASS numDeriv ramcmc smfsb]; }; SK = derive2 { name="SK"; version="1.1"; sha256="19yg7yc2k4zz29bh42lw2jpjvkdj33f26xkfs8vz8lpp98yjf2vx"; depends=[FitAR GD MASS RColorBrewer rgeos rtop sp]; }; SKAT = derive2 { name="SKAT"; version="2.0.0"; sha256="1qkc95n31bmz5y3saai0z50a081mngjlsypc259hbw355xayj2xr"; depends=[Matrix SPAtest]; }; @@ -4089,18 +4201,21 @@ in with self; { SLHD = derive2 { name="SLHD"; version="2.1-1"; sha256="0y3ilxd0phmks8zkmpgw7p5zrkwq4k95h976cwk58pavvhfwj9kb"; depends=[]; }; SLICER = derive2 { name="SLICER"; version="0.2.0"; sha256="10i0hfl6js26n8xwk9pldzm9vv7hmii6gzj04lhqy0g3njds25kp"; depends=[alphahull igraph lle]; }; SLIDE = derive2 { name="SLIDE"; version="1.0.0"; sha256="0x4fm29r7icg33k8gw3vqvxib8n9a1xwg484x9yffybips9ka22c"; depends=[]; }; - SLOPE = derive2 { name="SLOPE"; version="0.2.1"; sha256="1ilwa8hkp8frai77vn1ba6wdqxhwcqpb0mw6ag2np5hjm2a8vrs3"; depends=[foreach lattice Matrix Rcpp RcppArmadillo]; }; - SMARTAR = derive2 { name="SMARTAR"; version="1.0.0"; sha256="04v6nvkcjchln8jxa9qm9j2hrxbm8rm9v96v6j313ia8js0krp9q"; depends=[MASS]; }; + SLOPE = derive2 { name="SLOPE"; version="0.3.2"; sha256="0hjp34lwwrg60ccwvdy1hnl5vbd8lhyc2j1jp3kfx773akdrqvj1"; depends=[foreach lattice Matrix Rcpp RcppArmadillo]; }; + SMARTAR = derive2 { name="SMARTAR"; version="1.1.0"; sha256="0ymhka4pjlqlnpv47abmc76ggijfw83i3jp9mrspnzcnb4d378xm"; depends=[MASS]; }; SMARTp = derive2 { name="SMARTp"; version="0.1.1"; sha256="0gkhl9j4l67brfmln28m4q4hfi271jlg5aijnjwahlj8nsi6384y"; depends=[covr mvtnorm sn]; }; SMC = derive2 { name="SMC"; version="1.1"; sha256="1r4ajgi785lmpnlxrba0n6phmk1f0mb6b5yqk6hx8gng2w8ggclz"; depends=[]; }; SMCRM = derive2 { name="SMCRM"; version="0.0-3"; sha256="1x06w00sdijhg5h1s61q4ym5wgk97pw9md6api7if2cxjv7h5zcy"; depends=[]; }; + SMDIC = derive2 { name="SMDIC"; version="0.1.2"; sha256="0a50fjfx1nx6khs8pna0v6fxdai4rf6b2rrribx1kq2k039jjj8l"; depends=[e1071 GSVA maftools MASS pheatmap pracma preprocessCore samr survival survminer]; }; SMFI5 = derive2 { name="SMFI5"; version="1.0"; sha256="10qp33l0dig00y9gfhpzqig6dbkjw76ch9pfq64dn4xrdkpq1kx5"; depends=[corpcor ggplot2 reshape]; }; SMFilter = derive2 { name="SMFilter"; version="1.0.3"; sha256="1islyqg9w08mvs2kf0ddmdlp885arzp0jy7mqvixjm4ayi5zfrri"; depends=[]; }; SMITIDstruct = derive2 { name="SMITIDstruct"; version="0.0.5"; sha256="12ffxj96w3pi18l0scz5sd3dl37vd4vg2wcfykaxdhf8z142ha3k"; depends=[Biostrings ggplot2 sf]; }; SMITIDvisu = derive2 { name="SMITIDvisu"; version="0.0.6"; sha256="0563z9dypxsd9g532i1xfxdi8d29zwdla5ria15harimfda55ksq"; depends=[htmlwidgets jsonlite magrittr Rcpp yaml]; }; + SMLE = derive2 { name="SMLE"; version="0.4.1"; sha256="1ssry4kcqz31na2xns2sqfc7nifclhg8bxi1cnri96b1k6zd29qd"; depends=[doParallel foreach glmnet mvnfast]; }; SMLoutliers = derive2 { name="SMLoutliers"; version="0.1"; sha256="10frs7wcyn368m7fvw2f1cyd0xqr6sv5jziixnyvr8q5fadyl2p0"; depends=[]; }; SMM = derive2 { name="SMM"; version="1.0.2"; sha256="1g1c7ssdcnzgv6b221ya1xrypg2ksahc7qj1042j8nlx5wg29cld"; depends=[DiscreteWeibull seqinr]; }; SMMA = derive2 { name="SMMA"; version="1.0.2"; sha256="13psgrpljnaxpcq4amiyg5mqhpzmb2hyb7jzh3h8wyq18rvs3s4d"; depends=[Rcpp RcppArmadillo]; }; + SMMT = derive2 { name="SMMT"; version="1.0.2"; sha256="0adg0k0sz3n53cxnz7i6xl8xivl21ky3jmigjv0jjgliqyic3dzk"; depends=[dplyr tibble XML]; }; SMNCensReg = derive2 { name="SMNCensReg"; version="3.0"; sha256="06542jacy74mw6ic0i1ml09pn45sll96bya7dqja6bg9yp0m6bvr"; depends=[Matrix PerformanceAnalytics]; }; SMPracticals = derive2 { name="SMPracticals"; version="1.4-3"; sha256="0zxq84f9i3b86xx6msb25b61gyj9k09iab2b7wg4d93yas9qzayf"; depends=[ellipse MASS nlme survival]; }; SMR = derive2 { name="SMR"; version="2.0.1"; sha256="0qy56fmismcjklpf29ic2gi1g8ajdjpxsl0akb9cqzyisyf641ia"; depends=[]; }; @@ -4114,15 +4229,14 @@ in with self; { SNSequate = derive2 { name="SNSequate"; version="1.3.3"; sha256="1qadhk2acpr0lkh2z37ivif9dbp7zb31lfn32ch2sb0z9pp56his"; depends=[emdbook knitr magic plyr progress statmod]; }; SNscan = derive2 { name="SNscan"; version="1.0"; sha256="1s7dxi7faih0phx5wk2xrrzhvfwicq3h2cg8x2klwbrslin973lz"; depends=[igraph poweRlaw Rmpfr]; }; SOAR = derive2 { name="SOAR"; version="0.99-11"; sha256="1n38gx5sxpkqfkk4y6vpp6g19b8bs5bisni9wn6311s0csizp86m"; depends=[]; }; - SODC = derive2 { name="SODC"; version="1.0"; sha256="18s4rcp5dzchvwrzzbfhbs3x91zlg1rymjarxjk5i429mfrn0krx"; depends=[magic MASS ppls psych]; }; SOFIA = derive2 { name="SOFIA"; version="1.0"; sha256="1jlaggxa2nz2r5yb2xmf0dh5wmxfdk6xwn0l3nwsqh82vyxhp7l9"; depends=[png]; }; SOIL = derive2 { name="SOIL"; version="1.1"; sha256="0dvfh84xjzald51kmdb546par2rbjdn3nys9y9w7cvafv2lc5yj9"; depends=[brglm2 glmnet MASS ncvreg]; }; SOLOMON = derive2 { name="SOLOMON"; version="1.0-1"; sha256="0z91wsrgdir25ks4dnirzsg4f1ngal7n40235m3w43j6y6dhkqrc"; depends=[]; }; - SOMbrero = derive2 { name="SOMbrero"; version="1.2-5"; sha256="0scr6dfp70im3nf5frkagb2di6n3b5c1yiiwq9d3c0r4gxi40dzc"; depends=[igraph RColorBrewer scatterplot3d shiny wordcloud]; }; + SOMbrero = derive2 { name="SOMbrero"; version="1.3-1"; sha256="083zbbazf3d9n9a8cv758fr238qs6a895wbbjyjs6bksc355ykgc"; depends=[ggplot2 ggwordcloud igraph interp markdown metR scatterplot3d shiny]; }; SOPIE = derive2 { name="SOPIE"; version="1.5"; sha256="0isvb2vzzpn57bq0ix2pfaqdnl5z8qk6v6fvf15vnxcqg2sm63q5"; depends=[ADGofTest circular]; }; SOR = derive2 { name="SOR"; version="0.23.1"; sha256="1accs4bqy080nfmgkdg7bgamdrcwcn01y6nydvvq12w3v8asdvwh"; depends=[Matrix]; }; SOUP = derive2 { name="SOUP"; version="1.1"; sha256="0k8nlvl4681cz07xjazprcc0jhknfa5hgr7w1qxxmgrp3sprr8r4"; depends=[tensor]; }; - SP2000 = derive2 { name="SP2000"; version="0.0.5"; sha256="0ny7a3i7hb1j3vkdnjy8gyhbvpqnzj588l127p6wxal48ks2g7zp"; depends=[jsonlite pbmcapply purrr rlist tibble]; }; + SP2000 = derive2 { name="SP2000"; version="0.1.0"; sha256="0x6l09vhx1r5pra7l1psz6wr7vrmqr4r3jdfw1rv7c9aifvs1l0h"; depends=[DT jsonlite pbmcapply purrr rlist tibble XML xml2]; }; SPADAR = derive2 { name="SPADAR"; version="1.0"; sha256="0xzhcy5nglwx9j2jkm3i9xj1iw1y9wbf6rwfjyhpiwwq6qn8mn5r"; depends=[mapproj RCEIM]; }; SPARQL = derive2 { name="SPARQL"; version="1.16"; sha256="0gak1q06yyhdmcxb2n3v0h9gr1vqd0viqji52wpw211qp6r6dcrc"; depends=[RCurl XML]; }; SPAS = derive2 { name="SPAS"; version="2020.1.1"; sha256="1bvnyxg3npxv63kikmr30jgc14f1s1a5vfh40qs50nbzq84pl6bx"; depends=[BB MASS Matrix msm numDeriv plyr RcppEigen TMB]; }; @@ -4139,7 +4253,7 @@ in with self; { SPINA = derive2 { name="SPINA"; version="4.1.0"; sha256="0x7y150iq072qqci2niqk7j8pvhcylb7kdvwambg1r1gi3ffycm9"; depends=[]; }; SPIn = derive2 { name="SPIn"; version="1.1"; sha256="109xxrg7bsmmfd6ik85kxrw2qclxbh5ipsh5mmrdl4hki3hnyp2s"; depends=[quadprog]; }; SPODT = derive2 { name="SPODT"; version="0.9-1"; sha256="01yq429a4s63855bwpn2mqjj2k3cz4187kfpi7n7qqdpdvmxz109"; depends=[rgdal sp tree]; }; - SPOT = derive2 { name="SPOT"; version="2.0.5"; sha256="1g3ybbp12hn7wjny2aq3fy3h7c5h7xvmqgsqrmnjb58kqi04vcn7"; depends=[DEoptim ggplot2 MASS nloptr plotly randomForest ranger rgenoud rsm]; }; + SPOT = derive2 { name="SPOT"; version="2.0.6"; sha256="0l781g8qv67f70fnhdv341hif1zbv8qkpqak6xb1vbdvakjiriar"; depends=[DEoptim ggplot2 MASS nloptr plotly randomForest ranger rgenoud rsm]; }; SPPcomb = derive2 { name="SPPcomb"; version="0.1"; sha256="1kn3pi3c7g7waill1grm382ixbvnc7z8pbgzqd94hxqzgkivhid7"; depends=[nleqslv]; }; SPREDA = derive2 { name="SPREDA"; version="1.1"; sha256="0fn4p5apjq8zgd3zms2b88ga5wbsv86y59ac5x06w75rf071xglv"; depends=[nlme survival]; }; SPRT = derive2 { name="SPRT"; version="1.0"; sha256="1r4pfqh8k5avi8qgpk5x1cy8lmkn341yvjvd2r7wqwb3mr242r0v"; depends=[]; }; @@ -4152,16 +4266,17 @@ in with self; { SQB = derive2 { name="SQB"; version="0.4"; sha256="12ii8xlwd2r77bj76j7l43898ras25z3plhhv106jaklhpcnk23m"; depends=[caret nnet pls rpart]; }; SQDA = derive2 { name="SQDA"; version="1.0"; sha256="0nfimk625wb64010r5r7hzr64jfwgc6rbn13wvrpn0jgayji87h6"; depends=[limma mvtnorm PDSCE]; }; SQN = derive2 { name="SQN"; version="1.0.5"; sha256="0kb8kf6g482zqdp4avwvhs3pqghfny757dbzfl1abaigmvwvx4qj"; depends=[mclust nor1mix]; }; - SQRL = derive2 { name="SQRL"; version="0.7.1"; sha256="1ipkd1pl3v9an88maailz8ypikyh6rnxzpnb7wfxphks6m2swgfy"; depends=[RODBC]; }; - SQUAREM = derive2 { name="SQUAREM"; version="2020.2"; sha256="1j6sa93xjvynnzx9jx79a3fysbykmbqyknknsqif5bcha6xp6cvf"; depends=[]; }; + SQRL = derive2 { name="SQRL"; version="0.7.2"; sha256="0xvl73rs3ihzd4jg51sh1rgvpfazgsf8jm35zw3jwp1a08ygvnn8"; depends=[RODBC]; }; + SQUAREM = derive2 { name="SQUAREM"; version="2020.3"; sha256="17l05i87vwvcsk79fbg52zrx04zdlwiiyl3ga8qafs7mqx0j976q"; depends=[]; }; SRCS = derive2 { name="SRCS"; version="1.1"; sha256="13zf3cqs53w68f9zc1fkb9ql84rvzn7g1hbykqrbvss8hjaq8x1r"; depends=[]; }; SRRS = derive2 { name="SRRS"; version="0.1.1"; sha256="0jv545a97q4pyl89lmhn3y0jhdzyq033mvx144x8lcgx59s7cyi3"; depends=[gtools tcltk2]; }; SRTtools = derive2 { name="SRTtools"; version="1.2.0"; sha256="1203i6nqclx0faxyvhdaapmfxy8h95jj83svxriqh1hpava5s1dy"; depends=[magrittr]; }; - SSBtools = derive2 { name="SSBtools"; version="0.6.0"; sha256="1p00kacf49h475jdq9lf955dpzw81n399zzpzx7igp8d2snccy3f"; depends=[Matrix stringr]; }; + SSBtools = derive2 { name="SSBtools"; version="0.7.0"; sha256="12277lqn2qjvxqs4lq7sx41hkxkr2hp7lxgg5f23ixfqvpf375xs"; depends=[Matrix stringr]; }; SSDM = derive2 { name="SSDM"; version="0.2.8"; sha256="19l78dkjk76ababkd7xsfn0fy99khfa4i502q4vllpvch4cjz51c"; depends=[dismo e1071 earth gbm ggplot2 mgcv nnet poibin randomForest raster reshape2 rpart scales shiny shinydashboard shinyFiles sp spThin]; }; - SSDforR = derive2 { name="SSDforR"; version="1.5.15"; sha256="0cdjv32mc0j5b3ih9lkcspc4p87i1mlq21bjyx59bd9vgfa1bhkw"; depends=[MAd MASS metafor psych SingleCaseES TTR]; }; + SSDforR = derive2 { name="SSDforR"; version="1.5.17"; sha256="072ala1qdxnc58227b6m7vw79nyxjiasjhr98p8qll64nxyj4lmj"; depends=[MAd MASS metafor psych SingleCaseES TTR]; }; + SSHAARP = derive2 { name="SSHAARP"; version="1.0.0"; sha256="0qcl4msdwnmrjzxyp1az6zkz4j6abx65ap6n8zxpldg7wgxw26iz"; depends=[BIGDAWG data_table DescTools dplyr filesstrings gmt gtools sessioninfo stringr]; }; SSLASSO = derive2 { name="SSLASSO"; version="1.2-2"; sha256="0vnn9ksdf0qgjflgx1sfj6q6j9jfnarbx2222rh9kb10jy8b16jv"; depends=[]; }; - SSLR = derive2 { name="SSLR"; version="0.9.1"; sha256="00a26p9y0f6df345qkl2ga0q11a6sasv7p76nyvwjb7wcgbl09kz"; depends=[dplyr foreach generics magrittr parsnip plyr proxy purrr RANN Rcpp RcppArmadillo rlang RSSL]; }; + SSLR = derive2 { name="SSLR"; version="0.9.2"; sha256="0xkhvfd8ixgv7zqr2kknl8bhri0nkpx3vf2dv44r0ganq21xaa99"; depends=[dplyr foreach generics magrittr parsnip plyr proxy purrr RANN Rcpp RcppArmadillo rlang RSSL]; }; SSM = derive2 { name="SSM"; version="1.0.1"; sha256="1h8yyzh5rn5jay70kyzvwirfndi049a5w28qigrjv5rxd7ml84l7"; depends=[]; }; SSN = derive2 { name="SSN"; version="1.1.15"; sha256="057lh2ym82ff3c25vyh97csns4jwlbvxwc4jai0i4yplxf0ccmha"; depends=[BH igraph lattice maptools MASS Matrix rgdal rgeos RSQLite sp]; }; SSOSVM = derive2 { name="SSOSVM"; version="0.2.1"; sha256="11wlalpw6yhvv95xr8vvgxgl4jafc2ghzsk5wqyv71ahxarmrlss"; depends=[MASS mvtnorm Rcpp RcppArmadillo]; }; @@ -4175,7 +4290,8 @@ in with self; { STARTS = derive2 { name="STARTS"; version="1.2-35"; sha256="0xf5dck1zp1m1bxj8j02yyvg0y79i1y4bi3a6q1k41zixk3hcn2s"; depends=[CDM LAM Rcpp RcppArmadillo sirt]; }; STARTdesign = derive2 { name="STARTdesign"; version="1.0"; sha256="1q61l3v8ishzax3ppy0pz4ky4l46472l6j36hjlsa8cl01ik1zjf"; depends=[Rcpp]; }; STAT = derive2 { name="STAT"; version="0.1.0"; sha256="0x0qpnlcb52k3x8jwiljsamx81hdcjagfpapv63z054bvig0jvgv"; depends=[corrgram dplyr Hmisc psych psycho rmarkdown rpivotTable shiny]; }; - STB = derive2 { name="STB"; version="0.6.3.1"; sha256="0fj1cfxqhijpxl41z799zd7id95jsb84ylrbqzrd1jlp80plyw83"; depends=[Matrix VCA]; }; + STAT2 = derive2 { name="STAT2"; version="0.1.0"; sha256="09i6vzp5zmi84kdwafb5cbqvja32mdpj8bnp8gnc2wyqwy3a8cqv"; depends=[corrgram dplyr Hmisc psych psycho rmarkdown rpivotTable shiny]; }; + STB = derive2 { name="STB"; version="0.6.4"; sha256="09m9hihsm7f7bzxk4x1w1y6qmy5liqr0ym1rv45ny2380i7y9fl7"; depends=[Matrix VCA]; }; STEPCAM = derive2 { name="STEPCAM"; version="1.2"; sha256="03crbc7hag8w333j9c7k0q7zy7xmfid4lq773p74r55jmac5xpjf"; depends=[ade4 ape FD geometry gtools MASS vcd]; }; STGS = derive2 { name="STGS"; version="0.1.0"; sha256="0xfwd0jsg3glbr3c5l5yyri4is5kg77ivgr6qlzaxp6p8q7yfzqf"; depends=[brnn glmnet kernlab randomForest rrBLUP]; }; STI = derive2 { name="STI"; version="0.1"; sha256="1p408y9w2h4ljaq0bsw7vc1xghczjprf558cyg6994m0nv5fh4c4"; depends=[fitdistrplus zoo]; }; @@ -4188,16 +4304,15 @@ in with self; { STV = derive2 { name="STV"; version="1.0.1"; sha256="1gzy47s4qg83fagvm19jwpbbplkvxi9qv6ac0j86i0s8v0yrlrks"; depends=[]; }; STraTUS = derive2 { name="STraTUS"; version="1.1.2"; sha256="0n3i7gbycp1f10058h9xlh3yk21w2izdb3xgs793mmh1i1sjy394"; depends=[ape ggplot2 ggtree gmp igraph phangorn RcppAlgos]; }; SUE = derive2 { name="SUE"; version="1.0"; sha256="0akv724s84v2zixvwywj1ydfnfvcjnaabv6gm0601nsrh6ij1mi6"; depends=[]; }; - SUMMER = derive2 { name="SUMMER"; version="0.3.0"; sha256="17ymbwga6m2npbvvqqhcnjd89f0jsaz8kwf7n68wwkqvgiqh3qcm"; depends=[ggplot2 maptools Matrix reshape2 sp spdep survey survival viridis]; }; + SUMMER = derive2 { name="SUMMER"; version="1.0.0"; sha256="11c3yb61gandl3rk92n451sbwgjf9ah3vs4nmm30qldrqjb9gpna"; depends=[data_table ggplot2 ggridges maptools Matrix RColorBrewer reshape2 shadowtext sp spdep survey survival viridis]; }; SVMMaj = derive2 { name="SVMMaj"; version="0.2.9"; sha256="1405gigyjfp8by8nfx4g3rhw9x6r6g7dkpgw52jllv6n4036xa3h"; depends=[dplyr ggplot2 gridExtra kernlab reshape2 scales]; }; SVMMatch = derive2 { name="SVMMatch"; version="1.1"; sha256="1ykwrhlid4hs466xh3kv6y2qdhgk0jiglg0l3zwk5qlni6p26zc9"; depends=[Rcpp RcppArmadillo]; }; SVN = derive2 { name="SVN"; version="1.0.1"; sha256="0n93lqb1f2s2qvzc8lrcqmr0fhd57xqbi0ymrqqmll31ns679m92"; depends=[data_table igraph memoise]; }; - SWIM = derive2 { name="SWIM"; version="0.2.0"; sha256="120rr71hlvwbb3qdwl7s7mhrbjikl11yp55xmddk6xqs13qvi5j0"; depends=[ggplot2 Hmisc nleqslv plyr Rdpack reshape2]; }; + SWIM = derive2 { name="SWIM"; version="0.2.1"; sha256="1v8v48pmb1pxjw1jqkvz0qdd0gpi53hb59xh5kak3jjh94sbxz5g"; depends=[ggplot2 Hmisc nleqslv plyr Rdpack reshape2]; }; SWMPr = derive2 { name="SWMPr"; version="2.3.1"; sha256="1az6ss8wkdgq4l1cmfflajzs7z6w6140bclb289gb090pi69p7gy"; depends=[data_table dplyr ggmap ggplot2 gridExtra httr lattice maptools oce openair RColorBrewer reshape2 tictoc tidyr XML zoo]; }; - SWMPrExtension = derive2 { name="SWMPrExtension"; version="1.1.3"; sha256="1xyn802aadx3fxckqvimkpwbx0pv6g3wqjzjx2k46qnm2gl6ck0v"; depends=[broom dplyr EnvStats flextable ggplot2 ggthemes leaflet lubridate magrittr maptools officer RColorBrewer rgdal rgeos rlang scales sp SWMPr tidyr]; }; + SWMPrExtension = derive2 { name="SWMPrExtension"; version="1.1.5"; sha256="1jjsl6mk4m9394bsdsm2k08chivy9zmpr6hl8hvg455z7kr2pk5m"; depends=[broom dplyr EnvStats flextable ggplot2 ggthemes leaflet lubridate magrittr maptools officer purrr RColorBrewer rgdal rgeos rlang scales sp SWMPr tidyr]; }; SYNCSA = derive2 { name="SYNCSA"; version="1.3.4"; sha256="0n9za302x638s666xs86zy94qch9wn0rln8xy6x9jymhhq9zn0kj"; depends=[FD permute RcppArmadillo vegan]; }; - SafeBayes = derive2 { name="SafeBayes"; version="1.1"; sha256="09bhd3z9ia2mvpn1h0hil00j6cm4x9y9ymxc3gj8wd4ybdi3jqlm"; depends=[]; }; - SailoR = derive2 { name="SailoR"; version="1.0"; sha256="1gb50qd9s3dwdvl6qihpkgwlhckbhn7h3wpz9k74xgyd874krcld"; depends=[]; }; + SailoR = derive2 { name="SailoR"; version="1.1.2"; sha256="01rb3lkf4m969dax36kfyjlavc3zmr7p3si3y1j6x9gf7jzyy1q9"; depends=[]; }; Sample_Size = derive2 { name="Sample.Size"; version="1.0"; sha256="1vfnb2gg3rax4sxd81xqznfvh300nv45nn7zjsyrdjyg1n3ym7nw"; depends=[]; }; SampleSize4ClinicalTrials = derive2 { name="SampleSize4ClinicalTrials"; version="0.2.2"; sha256="19dl5sfrsmahrf1q0ljpjmp2821mn2h9d53ds9jyci0wv287gzs9"; depends=[]; }; SampleSizeMeans = derive2 { name="SampleSizeMeans"; version="1.1"; sha256="1wbc46n8b8wbcxl21blbzs5728dr8r0l8d3jpzbha8pcav0xrh1m"; depends=[]; }; @@ -4206,8 +4321,6 @@ in with self; { SamplingBigData = derive2 { name="SamplingBigData"; version="1.0.0"; sha256="0khrh7vfqqzpfp16x0ic5ml854wr2fj28cx95s6c0pz91hzlxkns"; depends=[]; }; SamplingStrata = derive2 { name="SamplingStrata"; version="1.5-1"; sha256="01kjm45pc1zfy2xlp9fhynv4x2mzsgjwymr5j7narpmdsm14mxcx"; depends=[doParallel formattable memoise pbapply]; }; SanFranBeachWater = derive2 { name="SanFranBeachWater"; version="0.1.0"; sha256="18w2q3hzcrbmagnjyrn1ikwiyjh723mjb2vy0d8p1a6za0460p9w"; depends=[dplyr lubridate magrittr readr rvest tibble xml2]; }; - SanzCircos = derive2 { name="SanzCircos"; version="0.1.0"; sha256="0vw41qldp1gsj4mx2hdd5jfhx9r8pv62i8gvs86p6bvfzy2l1lq4"; depends=[dplyr pbapply purrr randomcoloR readr tibble tidyr]; }; - Scale = derive2 { name="Scale"; version="1.0.4"; sha256="1fa3840kji34qpbw6mxfavk8wq0vq0vx2w6ya71idbkxnvwc3y06"; depends=[Hmisc MASS psych]; }; Scalelink = derive2 { name="Scalelink"; version="1.0"; sha256="0likfjw5999zd0kv1ykby78bl0x3xgh0v1yjssk7fnw1ghkxgdib"; depends=[Rcpp RcppParallel]; }; SciViews = derive2 { name="SciViews"; version="0.9-13.1"; sha256="0wm4vnjh65jxyg82m8l08kanl414qiaz0cc6srshb8sdx2sixkfi"; depends=[ellipse]; }; ScoreGGUM = derive2 { name="ScoreGGUM"; version="1.0"; sha256="0f7sjfr3a8b8y1n9lrwyiyyljls3rbz84d9s93psi2fnmjj0kvgw"; depends=[]; }; @@ -4219,53 +4332,54 @@ in with self; { SearchTrees = derive2 { name="SearchTrees"; version="0.5.2"; sha256="11p81x1klkmxarypxpbisf78dlrmhzzg9y9hxpwz75pks1y56gqg"; depends=[]; }; SecKW = derive2 { name="SecKW"; version="0.2"; sha256="13x9l6ncx8qszkcr7dpfzrk4zqj4w8z5lwd394437vl4xf1xv0k6"; depends=[fdrtool pracma]; }; SeedCalc = derive2 { name="SeedCalc"; version="1.0.0"; sha256="1p8ncf3l2zhpbbblpjagg8cg9gf7f2izdcgc48n1aq4f7bmjbqgk"; depends=[]; }; - SeerMapper = derive2 { name="SeerMapper"; version="1.2.0"; sha256="1w1gpwf7n7y2czgj5ilmfljas9mps1ygbvvdrz9hjx9rcixrx594"; depends=[maptools RColorBrewer rgdal SeerMapper2010East SeerMapper2010Regs SeerMapper2010West SeerMapperEast SeerMapperRegs SeerMapperWest sp stringr]; }; - SeerMapper2010East = derive2 { name="SeerMapper2010East"; version="1.2.0"; sha256="1lgjxixdgmgxy79s34pz7k4khhw5x4hs8m6yg8qiq813w4byqkls"; depends=[sp]; }; - SeerMapper2010Regs = derive2 { name="SeerMapper2010Regs"; version="1.2.0"; sha256="0sb0l539cwh76559znvgbi1wcbs7h53pmk1m8jz853wc266f8ibx"; depends=[sp]; }; - SeerMapper2010West = derive2 { name="SeerMapper2010West"; version="1.2.0"; sha256="0zdh3k813r4w23r2aa26bglvfv10xja2ibacnl2vairl3nzpa8vc"; depends=[sp]; }; - SeerMapperEast = derive2 { name="SeerMapperEast"; version="1.2.0"; sha256="1bafxrfjdq4ipml6zl6ng3piz8i6izm3b2daf8k1041mlbb35k6f"; depends=[sp]; }; - SeerMapperRegs = derive2 { name="SeerMapperRegs"; version="1.2.0"; sha256="16byqrwmjwhgsfav344m99jpl403k9ajqgv74ibwms9319xqfz59"; depends=[sp]; }; - SeerMapperWest = derive2 { name="SeerMapperWest"; version="1.2.0"; sha256="1mq88ljz86bk4mjj6pmrd8k61rf69s7g1j8by4c0s3c6fnkwb3qg"; depends=[sp]; }; + SeerMapper = derive2 { name="SeerMapper"; version="1.2.4"; sha256="0r9piipdzynsjb0wb3kspkssh54vi9v3p0hifl2hjwl492mxa3gw"; depends=[maptools RColorBrewer rgdal SeerMapper2010East SeerMapper2010Regs SeerMapper2010West SeerMapperEast SeerMapperRegs SeerMapperWest sp stringr]; }; + SeerMapper2010East = derive2 { name="SeerMapper2010East"; version="1.2.4"; sha256="08k9gx95lf2wr9z6yck5299jpa77f8w3194cgczjaksg24djv172"; depends=[sp]; }; + SeerMapper2010Regs = derive2 { name="SeerMapper2010Regs"; version="1.2.4"; sha256="1pz1qc2pfcs2ydv9d5m066iflgrirs9kf4k6cdh2ai61y05fah7i"; depends=[sp]; }; + SeerMapper2010West = derive2 { name="SeerMapper2010West"; version="1.2.4"; sha256="1sa4yi0jr0vid042bksmkz7z62816in71xnw6kqipa80kw7m28dh"; depends=[sp]; }; + SeerMapperEast = derive2 { name="SeerMapperEast"; version="1.2.4"; sha256="1dcwwvb9dmv1494cfj1f5532gi5gzc17k1ci4pp0xyg6cfx6cll3"; depends=[sp]; }; + SeerMapperRegs = derive2 { name="SeerMapperRegs"; version="1.2.4"; sha256="1sbf6w8z0wxjxq8q67b0s0iapn539sfsixn1km2ckkmaig7g9hbz"; depends=[sp]; }; + SeerMapperWest = derive2 { name="SeerMapperWest"; version="1.2.4"; sha256="0q6b7hw2am34hy1nj619vksiamj1r9m31cj1723vzr1wzjg42by4"; depends=[sp]; }; SegCorr = derive2 { name="SegCorr"; version="1.2"; sha256="1g4bwfs539jf7ckzjyindi3v1av7vd38yz16m7cb20qqa0a33kbj"; depends=[jointseg]; }; - Segmentor3IsBack = derive2 { name="Segmentor3IsBack"; version="2.0"; sha256="0c7ag9svd1xlm60padg41gvz7qnbcp41kg3cz2dvi9hy2yrqw0qd"; depends=[]; }; + SegEnvIneq = derive2 { name="SegEnvIneq"; version="1.0"; sha256="1xl9q47n4vvmr9nr5yairdq9r8mgms44wh6b4l9sbar2kx9ybwj3"; depends=[OasisR outliers rgdal rgeos spdep]; }; Sejong = derive2 { name="Sejong"; version="0.01"; sha256="1d9gw42dbs74w7xi8r9bs6dhl23y16yxqzyhqqayvcm98q3l77nf"; depends=[]; }; SeleMix = derive2 { name="SeleMix"; version="1.0.1"; sha256="1qzy59wbjh8llm66l70xi0p3lv94iawh2h5vwa9sqy2ra5vmpaxk"; depends=[mvtnorm]; }; Select = derive2 { name="Select"; version="1.4"; sha256="1qx4wwxxwjq31vf645xvwb0y2z5h4v6ca8fcrfpaj5kc33f333v2"; depends=[ade4 FD lattice latticeExtra Rsolnp]; }; SelectBoost = derive2 { name="SelectBoost"; version="2.0.0"; sha256="137fxvlpc2vyn5w93ih8bm6pp198xwlbb9ky8dhxgarh0syz8g4v"; depends=[abind Cascade glmnet igraph lars msgps Rfast spls varbvs]; }; SelvarMix = derive2 { name="SelvarMix"; version="1.2.1"; sha256="02d16ffw5syq0d3yiim9jgrjlz99n956zxp23idpsmq6lb2whq66"; depends=[glasso Rcpp RcppArmadillo Rmixmod]; }; - SemNeT = derive2 { name="SemNeT"; version="1.2.0"; sha256="1j1i0c5l490l5h38ni9ylycfmks9giirzk44qhyx2mdqvy1sq5sn"; depends=[doParallel dplyr foreach ggplot2 igraph lsa magrittr NetworkToolbox networktools pbapply plyr purrr qgraph RColorBrewer SemNetCleaner]; }; - SemNetCleaner = derive2 { name="SemNetCleaner"; version="1.1.5"; sha256="1ak6y3jc2dbfl7bd5qg6hh5lrpisxfp87v8408qvvji6962h5fm5"; depends=[foreign htmlTable hunspell knitr R_matlab readxl rmarkdown searcher SemNetDictionaries stringdist stringi]; }; - SemNetDictionaries = derive2 { name="SemNetDictionaries"; version="0.1.5"; sha256="179dgq65m4kzbqxgcicnchahslildc43f506sa7x2prbr7by27d3"; depends=[]; }; + SemNeT = derive2 { name="SemNeT"; version="1.3.0"; sha256="19nh0lc979gdny0yw9ppi2kr8g3bcgpakwawqpmhar6jv5v69aj1"; depends=[dplyr ggplot2 igraph magrittr NetworkToolbox pbapply plyr purrr qgraph RColorBrewer scales]; }; + SemNetCleaner = derive2 { name="SemNetCleaner"; version="1.2.0"; sha256="1zirw6v3xkbw0xjsrwpq3y3rk51v8pxaj0h28c3pjs41dy2wa85i"; depends=[foreign hunspell R_matlab readxl searcher SemNetDictionaries stringdist stringi]; }; + SemNetDictionaries = derive2 { name="SemNetDictionaries"; version="0.1.6"; sha256="1rnclbcq4y8jl395y9im2ink45fq8320zrhbr7bqi54v86banh8r"; depends=[]; }; Semblance = derive2 { name="Semblance"; version="1.1.0"; sha256="1kzrg5z3244nx9y37p092wpangni3fxpx04i5fb4dhrmav4rvgab"; depends=[DescTools fields msos PerformanceAnalytics]; }; SemiCompRisks = derive2 { name="SemiCompRisks"; version="3.3"; sha256="06anhf0kqaz4i84g73w3l4gf0q2mwi00vlkciqfbxpwgrbacplf6"; depends=[Formula MASS survival]; }; SemiMarkov = derive2 { name="SemiMarkov"; version="1.4.6"; sha256="0nga790kcrvmbrx5asp4062711x0kjsccc246l4syiiw30b769ig"; depends=[MASS numDeriv Rsolnp]; }; SemiPar = derive2 { name="SemiPar"; version="1.0-4.2"; sha256="0pa3drpvclkw81ji5m1h5arj5c2rh03dnlff97cnnr1v5kvg1i4w"; depends=[cluster MASS nlme]; }; SenSrivastava = derive2 { name="SenSrivastava"; version="2015.6.25"; sha256="0r4p6wafnfww07kq19lfcs96ncfi0qrl8n9ncp441ri9ajwj54qk"; depends=[]; }; SensitivityCaseControl = derive2 { name="SensitivityCaseControl"; version="2.1"; sha256="00jqzqx7g0av9lw13is723gph486gb8ga0wgcmmzpmb24s5nya9z"; depends=[]; }; - SensoMineR = derive2 { name="SensoMineR"; version="1.25"; sha256="0bnb8cx3vhmzlrnhgaarbr94l41c5jx4761vzc5xa7m0ih40q3s0"; depends=[AlgDesign cluster FactoMineR ggplot2 gtools KernSmooth reshape2]; }; + SensoMineR = derive2 { name="SensoMineR"; version="1.26"; sha256="0wa6wq8jnk0h5hmx03f8h8pa1g4dw0f3lxrsi93mgz740xd559yf"; depends=[AlgDesign cluster FactoMineR ggplot2 ggrepel gtools KernSmooth reshape2]; }; SensusR = derive2 { name="SensusR"; version="2.3.1"; sha256="1x1a8vnpn6h7905wa4lvf7vibkl2dsa4yyg2sg4bbi719lcki2q0"; depends=[ggmap ggplot2 jsonlite lubridate openssl plyr R_utils]; }; SentimentAnalysis = derive2 { name="SentimentAnalysis"; version="1.3-3"; sha256="0k6sf25hqisjjc97n17vdihpblab0ywv77lfxdzwpsbcv2x6gsx9"; depends=[ggplot2 glmnet moments ngramrr qdapDictionaries spikeslab stringdist tm]; }; SeqAlloc = derive2 { name="SeqAlloc"; version="1.0"; sha256="04rhr3gb2p9i35a3x4k8m0lv42ncfqlhx6sf3bq8yihppwrag8x3"; depends=[]; }; SeqDetect = derive2 { name="SeqDetect"; version="1.0.7"; sha256="054b5v0jzk9pj9hrxk31kvcdm789lx8gzh70ivskixz57kajmiss"; depends=[dplyr eventdataR igraph Rcpp]; }; SeqFeatR = derive2 { name="SeqFeatR"; version="0.3.1"; sha256="1dvl65n60j7wl0jdb0myi9hprlr9grq6nf9m68gzxm9sz3h8lpvh"; depends=[ape Biostrings calibrate coda ggplot2 phangorn plotrix plyr qvalue R2jags scales tcltk2 widgetTools]; }; - SeqGrapheR = derive2 { name="SeqGrapheR"; version="0.4.8.5"; sha256="041hlf64zbndz76r076pmym4dw4xl3fahryvpvjspw0sdlhmfm8c"; depends=[Biostrings cairoDevice gWidgets gWidgetsRGtk2 igraph rggobi]; }; SeqKat = derive2 { name="SeqKat"; version="0.0.8"; sha256="09b5zrp41241ha5q8bxll9n12sn11hsbv46g2ld1lqsy2razivr4"; depends=[doParallel foreach Rcpp]; }; SeqMADE = derive2 { name="SeqMADE"; version="1.0"; sha256="0nf1xjhk0kpmmzgcxycg3ccxvwq6gydjq7xq6n9m7k7v35v9v3qf"; depends=[MASS]; }; SeqNet = derive2 { name="SeqNet"; version="1.1.0"; sha256="0dbiafqgqnmws38lpa58mkzciprkan5qnrw9aivi89s065ykjd74"; depends=[fitdistrplus ggplot2 igraph mvtnorm purrr RColorBrewer Rcpp rlang tibble]; }; SequenceSpikeSlab = derive2 { name="SequenceSpikeSlab"; version="0.1.1"; sha256="079qm4klgaml99j4cshy3n54pg7q537zlagib4xd8mswdmqdvll6"; depends=[Rcpp RcppProgress selectiveInference]; }; Sequential = derive2 { name="Sequential"; version="3.1"; sha256="0wh5bxqgmkmlbz9bmvpv3lp8mq4iih86a73ccl6fycfpqvq6nf6i"; depends=[boot]; }; SequentialDesign = derive2 { name="SequentialDesign"; version="1.0"; sha256="1gi37pixwbpy7358id1c75rckr352hs8vjs8sk8qgsr97pkm5xdq"; depends=[Sequential]; }; - SetMethods = derive2 { name="SetMethods"; version="2.5"; sha256="1f90szzfv370k2a92p8hi8zcjcfj5dsffhkhdbqk00s45cpjsn20"; depends=[admisc betareg fmsb ggplot2 ggrepel lattice QCA scatterplot3d stargazer]; }; + SetMethods = derive2 { name="SetMethods"; version="2.6"; sha256="1yvn5jcv83cd3z4sd7fws1j298fljzcif6037b65wy6ywrrbb73x"; depends=[admisc betareg fmsb ggplot2 ggrepel QCA scatterplot3d stargazer]; }; SetRank = derive2 { name="SetRank"; version="1.1.0"; sha256="0p7vwsw05s5hfw1mfh3fbm9nfzsymnxzrdjin7k21dx7asb618wy"; depends=[data_table igraph XML]; }; SetTest = derive2 { name="SetTest"; version="0.2.0"; sha256="08wc6cbnannmwkncqhpcw6l0y7c1v7z3awk5j7fd853nszfmpbk0"; depends=[]; }; - Seurat = derive2 { name="Seurat"; version="3.1.5"; sha256="1lbq2pqhb6ih6iqawlnzdh05zff71pwbw1cpfv2sld3pd7kz0zkm"; depends=[ape cluster cowplot fitdistrplus future future_apply ggplot2 ggrepel ggridges httr ica igraph irlba KernSmooth leiden lmtest MASS Matrix patchwork pbapply plotly png RANN RColorBrewer Rcpp RcppAnnoy RcppEigen RcppProgress reticulate rlang ROCR rsvd Rtsne scales sctransform tsne uwot]; }; + Seurat = derive2 { name="Seurat"; version="3.2.0"; sha256="1vj3dlsqakgnn4x1jz9fkl2cy0jzc5s65h1c20fnamr7lk45pnf2"; depends=[ape cluster cowplot fitdistrplus future future_apply ggplot2 ggrepel ggridges httr ica igraph irlba jsonlite KernSmooth leiden lmtest MASS Matrix miniUI patchwork pbapply plotly png RANN RColorBrewer Rcpp RcppAnnoy RcppEigen RcppProgress reticulate rlang ROCR rsvd Rtsne scales sctransform shiny spatstat tibble uwot]; }; ShapeChange = derive2 { name="ShapeChange"; version="1.4"; sha256="1ch7avx8mxjk8vrp17inaihmbsv968wflyk1n4fbjvacbl24vn2b"; depends=[coneproj quadprog]; }; - ShapePattern = derive2 { name="ShapePattern"; version="2.0.4"; sha256="0bvcxm4rxi0a7cj7w6qpnqmpvqzdww7w43a2fa3bcks8g0hy71pc"; depends=[landscapemetrics raster rgdal rgeos sp]; }; + ShapePattern = derive2 { name="ShapePattern"; version="2.1.0"; sha256="10lqapjw2vypz1rrwgr7maw79g5j7g3gfp38g88w1sxlxasmx7by"; depends=[igraph landscapemetrics raster rgdal rgeos sp]; }; + ShapeRotator = derive2 { name="ShapeRotator"; version="0.1.0"; sha256="1pg2m1wh7fbchm8gp3mngfnf5g2rbhvzim1bpzqyvxqpx6ynicsa"; depends=[plot3D]; }; ShapeSelectForest = derive2 { name="ShapeSelectForest"; version="1.4"; sha256="15ds3024qcvnq3pnbhpyd6hbif26mdzw1srqv44hwsllgzpi7602"; depends=[coneproj raster]; }; SharpeR = derive2 { name="SharpeR"; version="1.2.1"; sha256="1xcnbjwcqc9mhb6kqcarkmjcr5zrn5hryfp4i4rayra9yk9k18r8"; depends=[matrixcalc sadists]; }; + ShiftConvolvePoibin = derive2 { name="ShiftConvolvePoibin"; version="1.0.0"; sha256="0pj3vynm8afns2kcwvmramxgbd0s2ksyyc5iha6p4dw2nz4hahc7"; depends=[]; }; ShiftShareSE = derive2 { name="ShiftShareSE"; version="1.0.1"; sha256="09sm3frapxv1zhxy84wqyaxdk5jx62ijszfa34zlknlgivividfy"; depends=[Formula]; }; ShinyImage = derive2 { name="ShinyImage"; version="0.1.0"; sha256="0nhsaq6i9lr8gqpdkahw3qr0c0cb0qwc0nqpk1ism21l6zg6ahc9"; depends=[EBImage R6 shiny shinyjs]; }; - ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.3.2"; sha256="1h6zja2yvg0dj01x7l29jv6rx0h3adqnkkjqgajd8vyj5hv536v7"; depends=[corrplot cowplot CTT data_table deltaPlotR difNLR difR DT ggdendro ggplot2 gridExtra knitr latticeExtra ltm mirt moments msm nnet plotly psych psychometric reshape2 rmarkdown shiny shinyBS shinydashboard shinyjs stringr VGAM xtable]; }; + ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.3.3"; sha256="1yc2a2xc6vdfr0qsgw36kd2m15wlfpgam6nx9z0sbxwmr3a95cx6"; depends=[corrplot cowplot CTT data_table deltaPlotR difNLR difR DT ggdendro ggplot2 gridExtra knitr latticeExtra ltm mirt moments msm nnet plotly psych psychometric reshape2 rmarkdown shiny shinyBS shinydashboard shinyjs stringr VGAM xtable]; }; ShinyTester = derive2 { name="ShinyTester"; version="0.1.0"; sha256="0wm4rl2p8ggw6v2chk9b6ygh5y8p8cwzbyra0nr0qr2ka97didp8"; depends=[dplyr purrr readr stringr tidyr visNetwork]; }; ShortForm = derive2 { name="ShortForm"; version="0.4.6"; sha256="0r8flmfhm47kyzy97j3mr87srfsxwlqqsx7v0ay9qm7q2jfg6xsw"; depends=[ggplot2 lavaan stringr tidyr]; }; ShrinkCovMat = derive2 { name="ShrinkCovMat"; version="1.4.0"; sha256="0iyri3syjk9xv49d87fdyhnxg5c5x827vnak8vgckkkp62sdln2q"; depends=[Rcpp RcppArmadillo]; }; @@ -4274,12 +4388,12 @@ in with self; { SiZer = derive2 { name="SiZer"; version="0.1-7"; sha256="068xaawc9vhi7a0b52jfq5r81kwnxn2wnqar1b35wwckmsd40b20"; depends=[boot]; }; SigOptR = derive2 { name="SigOptR"; version="0.0.1"; sha256="1sylchhhz6kx4r8jx95cvsmjsacjh8pin7acf2fyw2a4nlx9r1a6"; depends=[httr jsonlite]; }; SigTree = derive2 { name="SigTree"; version="1.10.6"; sha256="18gh7azjr979ijc2y4yyskj24ay697rw3j7znc5p4a63s4vpxr9w"; depends=[ape MASS phyext2 phylobase phyloseq RColorBrewer vegan]; }; - SightabilityModel = derive2 { name="SightabilityModel"; version="1.3"; sha256="0rgv5735y07yyv5y9c3flzha97ykn34ysmzy6as1z94hqfr4w746"; depends=[]; }; - Signac = derive2 { name="Signac"; version="0.2.5"; sha256="01cpya2x9dzjxicqzrkiafhn571n3dw7n10rwz3cs528qgap43db"; depends=[BiocGenerics data_table dplyr future future_apply GenomeInfoDb GenomicRanges gggenes ggplot2 ggseqlogo IRanges irlba Matrix patchwork pbapply Rsamtools S4Vectors Seurat tidyr zoo]; }; + SightabilityModel = derive2 { name="SightabilityModel"; version="1.4.0"; sha256="1wxn9jw9vpggl1i5510kkjkh77pmpl1yq28d2c8aivhlc44i1fsm"; depends=[formula_tools Matrix msm plyr survey]; }; + Signac = derive2 { name="Signac"; version="1.0.0"; sha256="1n6sb39xi2n9j1yk536ii4p7mmhb9vwvmx2y3iai55lzhysm4p9i"; depends=[AnnotationFilter Biobase BiocGenerics Biostrings biovizBase data_table dplyr fastmatch future future_apply GenomeInfoDb GenomicRanges ggbio ggplot2 ggrepel ggseqlogo IRanges irlba lsa Matrix patchwork pbapply qvalue Rcpp RcppRoll Rsamtools S4Vectors scales Seurat stringi tidyr]; }; SignifReg = derive2 { name="SignifReg"; version="3.0"; sha256="0yvbf56ap29rfm10vdv3mc67x1aklkwwapi72vzsi2xhrgwf395d"; depends=[]; }; - Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="4.5"; sha256="1rrdkmyv9fj7jjafl8zvyzpdjli2s004v1wdsifnq1zp0vmv1m9q"; depends=[Deriv MASS]; }; + Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="4.6"; sha256="1lkjngfgmk1j4vq2ybg2q0l5y3j7cif7a0yxc07vfxfamr0xq46w"; depends=[Deriv MASS]; }; Sim_PLFN = derive2 { name="Sim.PLFN"; version="1.0"; sha256="1jmsydhpfv2z9cr99hfy8cairhkkxpwk4wnz1adixwxazkn7qfah"; depends=[DISTRIB FuzzyNumbers]; }; - SimBIID = derive2 { name="SimBIID"; version="0.1.4"; sha256="1kqa1bm0f9kx7nr936hhpsi6hjjb3mlppxycwwi5pmzv9snm83hg"; depends=[coda dplyr ggplot2 mvtnorm purrr RColorBrewer Rcpp RcppArmadillo RcppXPtrUtils tibble tidyr]; }; + SimBIID = derive2 { name="SimBIID"; version="0.2.0"; sha256="1iz3paav7ayaqwifqsbb6h27pcdw0lmp6fl1nhvzbq3livvypgg7"; depends=[coda dplyr ggplot2 mvtnorm purrr RColorBrewer Rcpp RcppArmadillo RcppXPtrUtils tibble tidyr]; }; SimComp = derive2 { name="SimComp"; version="3.3"; sha256="04qkis20zk0z42bv4nznffqlpwby0y0ij27gj4sa0ha864pg0hi5"; depends=[mratios multcomp mvtnorm]; }; SimCop = derive2 { name="SimCop"; version="0.7.0"; sha256="1yrdy77a9h14v92c63ng8phi2ig73wy4xjjdb75322grc0bd3jq6"; depends=[quadprog]; }; SimCorMultRes = derive2 { name="SimCorMultRes"; version="1.7.0"; sha256="10snjwrh95407iracbc52b5cvr3sp2539rrjp7fw63q50pjl285v"; depends=[evd]; }; @@ -4288,19 +4402,19 @@ in with self; { SimDissolution = derive2 { name="SimDissolution"; version="0.1.0"; sha256="1rdsxykh740h22ln635m0ysm00pdw94vp7qhgify4mcvc46c3632"; depends=[alabama dplyr mvtnorm]; }; SimEUCartelLaw = derive2 { name="SimEUCartelLaw"; version="1.0.1"; sha256="1wg9sayk55mp3f2qykvfk0cbqh050vh0n1fhpq4fmlxqll87aml9"; depends=[plot3D plot3Drgl rgl]; }; SimHaz = derive2 { name="SimHaz"; version="0.1"; sha256="04q4xyc1ki1zr3grm3khfg0kbykjy3j9qpg332l7pxp4j3wa3aw3"; depends=[survival]; }; - SimInf = derive2 { name="SimInf"; version="6.5.1"; sha256="1sacky971igk2x8kmiqfavxvzvyxl53snjpb8zf72ffh3d2nn32c"; depends=[Matrix]; }; + SimInf = derive2 { name="SimInf"; version="7.0.1"; sha256="14s72krwk9sd405xgh71z2p9s29q5a1hr2qzaxsv1l4p5zbhvds8"; depends=[digest Matrix]; }; SimJoint = derive2 { name="SimJoint"; version="0.3.7"; sha256="03xf8n1fbbq63wz8kyj19h9vqz14z463cv8xqhmaknlamnnyhis5"; depends=[Rcpp RcppArmadillo RcppParallel]; }; SimMultiCorrData = derive2 { name="SimMultiCorrData"; version="0.2.2"; sha256="0brszbqxf40y65xp96c5hp7hhvz3gv0xlg93r5ik8qdh0bn0y1sw"; depends=[BB GenOrd ggplot2 Matrix nleqslv psych triangle VGAM]; }; SimPhe = derive2 { name="SimPhe"; version="0.2.0"; sha256="01kzypahw41jk8s2c92h0k9w32yaicis07wb6k8qlqcmv0zj8xry"; depends=[]; }; SimRAD = derive2 { name="SimRAD"; version="0.96"; sha256="0ivvd3k04v1akbblxcjhlyc315z3ig7wjs0g3b37lvlfp54ppbrg"; depends=[Biostrings ShortRead zlibbioc]; }; SimRVPedigree = derive2 { name="SimRVPedigree"; version="0.4.4"; sha256="0z7wwwl814bwaijkmg9wcdj5xisiamc9yqypmk0hzj950569aj8p"; depends=[dplyr kinship2]; }; - SimRVSequences = derive2 { name="SimRVSequences"; version="0.2.4"; sha256="0j10dr8mc0jmwixjvzfc20l50z2ismga142cq935jj3cd24j19b6"; depends=[dplyr intervals kinship2 magrittr Matrix reshape2 rlang SimRVPedigree]; }; + SimRVSequences = derive2 { name="SimRVSequences"; version="0.2.7"; sha256="0idrm60cqncyhdxylg1gs7gm5slvh8346s3gmf0f2dy57s0mq7ny"; depends=[dplyr intervals kinship2 magrittr Matrix reshape2 rlang SimRVPedigree]; }; SimReg = derive2 { name="SimReg"; version="3.0"; sha256="188q399xcrvjw7y7lf3hfbb7x0m0hc4zaf9i1w2c4xzswmvljd8r"; depends=[ontologyIndex ontologyPlot ontologySimilarity Rcpp]; }; SimSCRPiecewise = derive2 { name="SimSCRPiecewise"; version="0.1.1"; sha256="0mhlx9m5db8a40wf275qh59345676m8bpjjmyx1v22f6m9p3b2n4"; depends=[]; }; SimSeq = derive2 { name="SimSeq"; version="1.4.0"; sha256="068gg484w07qb4wajik2s3z79xfj0jg5l4pz69267dxi5kzd9fas"; depends=[fdrtool]; }; SimTimeVar = derive2 { name="SimTimeVar"; version="1.0.0"; sha256="1x0lkgqwx1vz1gbyvy0hx20n638n30j0dny1iz5vs0cvviq3cdv8"; depends=[car corpcor ICC metafor miscTools mvtnorm plyr psych]; }; SimVitD = derive2 { name="SimVitD"; version="0.1.2"; sha256="0ilv17ngs1y09z459yn5wlg0bql93awdy3gbmrjhv00iyp30kvjp"; depends=[poisson]; }; - SimilaR = derive2 { name="SimilaR"; version="1.0.7"; sha256="1zabx25wqvspyl8yxknr8glz9b0dmk9wn4yz8fry4wd1nx2hl28q"; depends=[BH Rcpp stringi]; }; + SimilaR = derive2 { name="SimilaR"; version="1.0.8"; sha256="1wlxscl94r3gxwsc9yw0y4z5nj28nxilijp0pbzv4z2n4aqc7vy6"; depends=[BH Rcpp stringi]; }; SimilarityMeasures = derive2 { name="SimilarityMeasures"; version="1.4"; sha256="1w4klcln4hy9vcik9csg7b3b8kk4raxgckwfrhqg089d80xbqsxj"; depends=[]; }; Simile = derive2 { name="Simile"; version="1.3.3"; sha256="1izyjp18m1inac3svkf59z3lddrv44m7pdkhisgkr987xs8gdch4"; depends=[]; }; SimpleTable = derive2 { name="SimpleTable"; version="0.1-2"; sha256="1rkybrp7zlb7cj37799npss1ldic0yf519q5l7a6ikal4yl1afyb"; depends=[hdrcde locfit MCMCpack]; }; @@ -4309,18 +4423,19 @@ in with self; { Simpsons = derive2 { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; }; SinIW = derive2 { name="SinIW"; version="0.2"; sha256="1z7rcjy0i09a9hjpjj1x8i46lv042l20lvb6b0pnsky2sx3v78pd"; depends=[fdrtool pracma]; }; SingleCaseES = derive2 { name="SingleCaseES"; version="0.4.3"; sha256="05bd03ka6qxmq8ls9w0nfklya3qay90s3i0iqjpcd6id4g8cz2kb"; depends=[dplyr magrittr purrr rlang tidyr tidyselect]; }; + SiteAdapt = derive2 { name="SiteAdapt"; version="1.0.0"; sha256="0ml11bv3sn8ynwsmaj666xpg17qbfqs9x9xi2b8n0v5gqnw44mpz"; depends=[ggplot2 ggpubr glmulti hydroGOF hyfo RColorBrewer solaR]; }; SitesInterest = derive2 { name="SitesInterest"; version="1.0"; sha256="06l6i6jnzwj683cvd9a9dg4nlb1wy1v3wb561y97a25bikm3mfy6"; depends=[plotrix]; }; SixSigma = derive2 { name="SixSigma"; version="0.9-52"; sha256="07s4an2az2pgqhq9c08jrf6b95nrs1b3r1092d53n1ps8wbdmbln"; depends=[e1071 ggplot2 lattice nortest qcc reshape2 scales testthat xtable]; }; SizeEstimation = derive2 { name="SizeEstimation"; version="1.1.1"; sha256="1rz57y76hzp880511kzm7nhxf201n0dr7ccip6slrjz784dl7s27"; depends=[MCMCpack msm]; }; SkewHyperbolic = derive2 { name="SkewHyperbolic"; version="0.4-0"; sha256="1blxibjrgb738q2ybavp4q3d6yn7hayhg851ysghp118wpl32nwr"; depends=[DistributionUtils GeneralizedHyperbolic]; }; Skillings_Mack = derive2 { name="Skillings.Mack"; version="1.10"; sha256="0zxqiw87avw2rb2acj7mvpyfkf7iwnkshg73ib74y5ml9awmg2mw"; depends=[MASS matrixcalc]; }; Sky = derive2 { name="Sky"; version="1.0"; sha256="02vjdggvanzsjx7ihxskapp5d5dlyalj02122wmarj8qf1ha1i2m"; depends=[EBImage]; }; - SkyWatchr = derive2 { name="SkyWatchr"; version="0.8-2"; sha256="0if44d79j2hlxdccn3jd7lrfbhrr09rfhfgds132syxprwkcb2mr"; depends=[htmlTable httr sp]; }; Sleuth2 = derive2 { name="Sleuth2"; version="2.0-5"; sha256="18rp23dr55p2zqxqj5i86gi8j25b0y7hc2p88rxqszgmbyn5ynhi"; depends=[]; }; Sleuth3 = derive2 { name="Sleuth3"; version="1.0-3"; sha256="0ngwri80cwqs50wjza8qyzzwign4ag1ck7fa1x7q5x08w9x6w08m"; depends=[]; }; SmCCNet = derive2 { name="SmCCNet"; version="0.99.0"; sha256="0ixvh1pd1gzbscwg4xjlcgxq5c9vqahil0fysfjc3fnba3wiidzx"; depends=[igraph Matrix pbapply PMA]; }; SmallCountRounding = derive2 { name="SmallCountRounding"; version="0.4.0"; sha256="0rx47hvm4wkmrj1hrwaa8j61y3agfb09n048j9xlda5rismaqk8z"; depends=[Matrix SSBtools]; }; - SmartEDA = derive2 { name="SmartEDA"; version="0.3.4"; sha256="0mw49hjf9k25hnml579dmmijgfq3n6ydqrr0308bw009j5m9rzw9"; depends=[data_table GGally ggplot2 gridExtra ISLR rmarkdown sampling scales]; }; + SmartEDA = derive2 { name="SmartEDA"; version="0.3.6"; sha256="15pry1p82kpyd0w4c9p84bm0812lzblfdpzsr46m221hfhr3spqh"; depends=[data_table GGally ggplot2 gridExtra ISLR rmarkdown sampling scales]; }; + SmartMeterAnalytics = derive2 { name="SmartMeterAnalytics"; version="1.0.3"; sha256="0i8my7ngzdbay3cld8axhvbri0nh0dd1dmv2lbsgyx4adr5hb30f"; depends=[FNN futile_logger plyr stinepack zoo]; }; SmartSVA = derive2 { name="SmartSVA"; version="0.1.3"; sha256="10a8s2znsg8ywqkq9fsxiyqfsprrx33pqissazp2vmabs11mg4np"; depends=[isva Rcpp RcppEigen RSpectra sva]; }; SmartSifter = derive2 { name="SmartSifter"; version="0.1.0"; sha256="16rzma87k27qg6qy39mzywdj8pzkp7r9q7bpqyikazp3fk2nmfri"; depends=[mvtnorm rootSolve]; }; SmarterPoland = derive2 { name="SmarterPoland"; version="1.7"; sha256="03vs6hcd96va9kfhl2yq77alnm33j1dxy79kgrx17hlijsy65qqv"; depends=[ggplot2 htmltools httr jsonlite rjson]; }; @@ -4331,12 +4446,13 @@ in with self; { SnowballC = derive2 { name="SnowballC"; version="0.7.0"; sha256="1wwm71mp4b2mjb5985x782p6xj519dfrpd40qli7lmig6afyw3xi"; depends=[]; }; SoDA = derive2 { name="SoDA"; version="1.0-6"; sha256="0sh2dan4ga2k14rirnkvgzsvbksx1k4ika5gkf5cy247rjkqnpj0"; depends=[]; }; SobolSequence = derive2 { name="SobolSequence"; version="1.0"; sha256="1vmp5jix3zvasvdirv8m88jc0cd8f34b4m1jvhs8g3v9lk8pxrrr"; depends=[Rcpp]; }; + SocEpi = derive2 { name="SocEpi"; version="1.0.0"; sha256="0r5wns6hisax6ad1v4lhprsp19a7anx2fyjvy9fdmls33jzrh1rv"; depends=[dplyr Rcpp tidyr]; }; SocialNetworks = derive2 { name="SocialNetworks"; version="1.1"; sha256="0d868xka6d35i17r28cvm0ya971xk6y1kycsfff0279w27cjd9x0"; depends=[Rcpp]; }; SocialPosition = derive2 { name="SocialPosition"; version="1.0.1"; sha256="1rrrjlq6czzhzipvkisbq024ca22v2vzx7wa4ddr9j7hnyyzzpic"; depends=[]; }; Sofi = derive2 { name="Sofi"; version="0.16.4.8"; sha256="0h9ir0xrwmsabfhwsr9hbpwabh1fsb3p51y8qcgm92iyvc6dl3mf"; depends=[foreign sampling shiny]; }; SoftClustering = derive2 { name="SoftClustering"; version="1.1902.2"; sha256="1r709r96ra9knkprjw6c227r7w6wygfpwc9pwwsjyw166305pxfs"; depends=[]; }; SoftRandomForest = derive2 { name="SoftRandomForest"; version="0.1.0"; sha256="1k439hcp53yg6f2x4bgafsri4jjgpva97dphzsdk5icfs5d38bh8"; depends=[boot]; }; - SoilHyP = derive2 { name="SoilHyP"; version="0.1.3"; sha256="12bpxj5zyy7r5p6aksz22pskvywjdv6as5d1y9b0ls4jqs42100f"; depends=[]; }; + SoilHyP = derive2 { name="SoilHyP"; version="0.1.4"; sha256="1na2i60646893s4ci0rlwaldlkgdbm2w4y0x1byhl2x6aryfcprp"; depends=[data_table lubridate]; }; SoilR = derive2 { name="SoilR"; version="1.1-23"; sha256="1cryypgnbck5hvkc2izrd8r10q2b97f2p1s46x4dk8p099gck5wg"; depends=[deSolve RUnit]; }; Sojourn = derive2 { name="Sojourn"; version="0.1.0"; sha256="16y17byrrqq8cms1dk7r1x0kl5f6571813mh8072ny6r17bzrqwv"; depends=[AGread caret dplyr lubridate magrittr nnet rlang svDialogs zoo]; }; Sojourn_Data = derive2 { name="Sojourn.Data"; version="0.1.0"; sha256="1iz37sb0kbdc5f8ikspy2rf6277x53ma0yq6pjqapklpccbg4ghg"; depends=[caret nnet]; }; @@ -4346,6 +4462,7 @@ in with self; { SortableHTMLTables = derive2 { name="SortableHTMLTables"; version="0.1-3"; sha256="1jgrqsm0cj8qlk0s4qn3b83w96mgpp5gmhgcg9q2glc72v8c4ljh"; depends=[brew testthat]; }; SortedEffects = derive2 { name="SortedEffects"; version="1.2.0"; sha256="0p16kxzss0inzvsd23sh7yiry1znpzdl36wf9dzhb9w7y9js8nxr"; depends=[boot dummies Hmisc pbapply quantreg rlist SparseM]; }; SoundexBR = derive2 { name="SoundexBR"; version="1.2"; sha256="0chc332v3wcz30v70yvdxhvcfdmvf4fj193cn00gl899xfxal89p"; depends=[]; }; + SoupX = derive2 { name="SoupX"; version="1.4.5"; sha256="0kwcf0v4h5432x6gik5xkbybp2b3xjpwn2wcdgrg3pw4lcybhzi3"; depends=[ggplot2 Matrix Seurat]; }; SourceSet = derive2 { name="SourceSet"; version="0.1.3"; sha256="159kg4pna24yihkghxc2k5f56dqk8aypxcmj1whgnajmgab29ry1"; depends=[graph gRbase gtools igraph plyr progress reshape2 scales]; }; SoyNAM = derive2 { name="SoyNAM"; version="1.6"; sha256="1vwl2mknk6x0sgk0baxsvb6xy4i7mf2ypkmc9lx869nakrx1ypah"; depends=[lme4 NAM reshape2]; }; SpATS = derive2 { name="SpATS"; version="1.0-11"; sha256="00xw6xz764sqlfr7pw2mxzxvm4i1p76n9h8wz62n0p3afn1d1glm"; depends=[data_table fields plot3Drgl spam]; }; @@ -4354,12 +4471,11 @@ in with self; { SpaCCr = derive2 { name="SpaCCr"; version="0.1.0"; sha256="0qm1fr6nnax3i1i77fi73x1z8db557avh6kivs0nskb1dfj8ri4m"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo tidyr]; }; SpaDES = derive2 { name="SpaDES"; version="2.0.4"; sha256="1ihxkr2c7rfpb02chmdv393nfc1id1cg7lq8pbb64xm5vdpyj0bv"; depends=[quickPlot reproducible SpaDES_addins SpaDES_core SpaDES_tools]; }; SpaDES_addins = derive2 { name="SpaDES.addins"; version="0.1.2"; sha256="0z1n48kfwy460zfam88ayfiq8sbzvnf6cpkasr74nykr4fabs5ha"; depends=[devtools magrittr miniUI reproducible rstudioapi shiny SpaDES_core stringi]; }; - SpaDES_core = derive2 { name="SpaDES.core"; version="1.0.0"; sha256="1bz9j787nynjxfa3dnv0ij39bsf5qq9kmqrhlas1sx9qvvzsnfaz"; depends=[backports crayon data_table dplyr fastdigest fpCompare igraph lubridate quickPlot R_utils raster RCurl reproducible rlang stringi whisker]; }; - SpaDES_tools = derive2 { name="SpaDES.tools"; version="0.3.4"; sha256="0iz6mnppp2p036b7z0rcv0hbcb3m1s4262ws797qpgxqj22d0hpy"; depends=[backports bit checkmate CircStats data_table fastmatch ff ffbase fpCompare magrittr quickPlot raster Rcpp reproducible rgeos sp]; }; + SpaDES_core = derive2 { name="SpaDES.core"; version="1.0.1"; sha256="12963853zk9rb9lsv2l6jsd0n5wi360i8kxvsjl1p3dcp8ii4mxq"; depends=[backports crayon data_table dplyr fastdigest fpCompare igraph lubridate qs quickPlot R_utils raster RCurl reproducible rlang stringi whisker]; }; + SpaDES_tools = derive2 { name="SpaDES.tools"; version="0.3.6"; sha256="1rfkdm0dnylpvmsv59vkwxlyq61znrskf43qpr3p8kl7jbkqw7v6"; depends=[backports checkmate CircStats data_table fastmatch fpCompare magrittr quickPlot raster Rcpp reproducible rgeos sp]; }; SpaTimeClus = derive2 { name="SpaTimeClus"; version="1.0"; sha256="1l204b8yd11pxwcb026xy39f4lps4sqk6mml8cybnjch8clk9djc"; depends=[Rcpp RcppArmadillo]; }; SpadeR = derive2 { name="SpadeR"; version="0.1.1"; sha256="0iy2rkq4vvps1a73kqq37zpsyl4pvl3vh07dwvpfhvp7f8nxbx99"; depends=[]; }; - SparkR = derive2 { name="SparkR"; version="2.4.5"; sha256="1bdq2qalirrd018hwj95ab1cmg10mp8innrdgc9m3xcwzdc75nrv"; depends=[]; }; - SparseBiplots = derive2 { name="SparseBiplots"; version="3.5.0"; sha256="00ynx0cr543zyx9b633cbdalza9wmfgbvvgvr8b6s5r71lpjii8f"; depends=[sparsepca]; }; + SparseBiplots = derive2 { name="SparseBiplots"; version="4.0.0"; sha256="0cpibfj106is7k0wq8z21r110wpxpqs393ic9hxx5yx386z5rcav"; depends=[ggplot2 ggrepel gtable rlang sparsepca testthat]; }; SparseDC = derive2 { name="SparseDC"; version="0.1.17"; sha256="0gsfj8631s67a0r9qjjll4rbb57nzk5fwm5bbggvf0027b9hk0pp"; depends=[]; }; SparseFactorAnalysis = derive2 { name="SparseFactorAnalysis"; version="1.0"; sha256="0lgfvydxb86r5hks1mf0p0yhgpx8s8fbkc3q6dimc728rw26qcv5"; depends=[directlabels ggplot2 MASS proto Rcpp RcppArmadillo truncnorm VGAM]; }; SparseGrid = derive2 { name="SparseGrid"; version="0.8.2"; sha256="057xbj2bhjm9i32kn39iscnqqdsvsmq0b8c92l8hnf9avf1sx10x"; depends=[]; }; @@ -4367,7 +4483,6 @@ in with self; { SparseM = derive2 { name="SparseM"; version="1.78"; sha256="0cmlm0lps3daalvp5jzjnjfys388hgkyc8yw0g5r2351h749xdyn"; depends=[]; }; SparseMDC = derive2 { name="SparseMDC"; version="0.99.5"; sha256="0d3ashk3l9fjdbiyjhaxc05ayyscissrg7lwhnh46hv3fydbixlj"; depends=[doParallel doRNG foreach]; }; SparseMSE = derive2 { name="SparseMSE"; version="2.0.1"; sha256="1alpvj0ya3r64wwfdzz2aaxgaf6512glzl65p97606c2fwrm6db7"; depends=[lpSolve Rcapture]; }; - SparseTSCGM = derive2 { name="SparseTSCGM"; version="2.5"; sha256="004hbk5fdd5b5hdvg25wl1908pfya26brm2pz00zypfvis99lps3"; depends=[abind flare glasso longitudinal MASS mvtnorm network QUIC]; }; SpatEntropy = derive2 { name="SpatEntropy"; version="0.1.0"; sha256="0nk399anjhsdki9cra650ynk6sa0366495470sawxcfs3vxmlzrl"; depends=[spatstat]; }; SpatMCA = derive2 { name="SpatMCA"; version="1.0.1.0"; sha256="1sjrm1md4lmhyq1yw3np4llkgdskw3mk667jr0k3isjmr6z88gxa"; depends=[fields MASS Rcpp RcppArmadillo RcppParallel]; }; SpatPCA = derive2 { name="SpatPCA"; version="1.2.0.1"; sha256="0vqajxcjjdp9dv53w0s4d1z63yrnzvs90h7cqs0f6daaihyvm130"; depends=[Rcpp RcppArmadillo RcppParallel]; }; @@ -4382,12 +4497,12 @@ in with self; { SpatialKDE = derive2 { name="SpatialKDE"; version="0.6.1"; sha256="15znbhfflzz1x396mnnbx9lx8xs6rfr2564kr632qb2d9ihj9s45"; depends=[dplyr glue magrittr raster Rcpp rlang sf]; }; SpatialML = derive2 { name="SpatialML"; version="0.1.3"; sha256="0akip0kkd1jjid12iwmaxkhkvcfzkxmrnrsv0b6nnvpjdl1jb589"; depends=[randomForest]; }; SpatialNP = derive2 { name="SpatialNP"; version="1.1-4"; sha256="1hj9fjhyxcvl2d0wdqyc899wy4f6iyi03g65icavkmqnwcs8c7hc"; depends=[]; }; - SpatialPack = derive2 { name="SpatialPack"; version="0.3-8"; sha256="0laixlr37048x2dr1zbk41kjp533w47khc1d9rihmlrwxrflprd0"; depends=[]; }; + SpatialPack = derive2 { name="SpatialPack"; version="0.3-819"; sha256="14479j2kfsd5611afg2zc9yp408awq3dyp4xcam5cg28ai95ifwl"; depends=[]; }; SpatialPosition = derive2 { name="SpatialPosition"; version="2.0.1"; sha256="0ljhb5j05kxhw1c2ki1m1688mgbg4pnf8z324i21b9idrcypcizn"; depends=[isoband raster rgeos sf sp]; }; SpatialRoMLE = derive2 { name="SpatialRoMLE"; version="0.1.0"; sha256="1m80vcd27g11v0gxnjz6p4ghljpxdb8jpkns8ry5yzhfvcpf29jc"; depends=[]; }; SpatialTools = derive2 { name="SpatialTools"; version="1.0.4"; sha256="0jgbrzsx2klvihv65y1ycqyr8awp5kqqz4qwfyfibx3b56lzna1q"; depends=[Rcpp RcppArmadillo spBayes]; }; SpatialVS = derive2 { name="SpatialVS"; version="1.1"; sha256="1xghfiz9wmmx11ssms7zjy3ggkjmc6kkbdwp3v5wjwpwapafzdk3"; depends=[fields MASS nlme]; }; - SpatialVx = derive2 { name="SpatialVx"; version="0.6-5"; sha256="1n2d686aa6y8dy1y78i6ncl9abiafj96prfgkgcv8w8jmg0d23z5"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat turboEM waveslim]; }; + SpatialVx = derive2 { name="SpatialVx"; version="0.6-6"; sha256="184bfx6yxv53pn20q50z84q7d5lcik0mk4w28vh84xx3zq9951mx"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat turboEM waveslim]; }; Spbsampling = derive2 { name="Spbsampling"; version="1.3.3"; sha256="14km5g0yngp4ikndnlfmsgrahpklgsclry269fhmxgk9ingr1isx"; depends=[Rcpp RcppArmadillo]; }; SpecDetec = derive2 { name="SpecDetec"; version="1.0.0"; sha256="1940pl4vm1kzszq0hwhqkwbk1xmrimjdf03acpdndy089mdg9avc"; depends=[abind]; }; SpecHelpers = derive2 { name="SpecHelpers"; version="0.2.7"; sha256="1v3v717ah2fkx9225860dwppdf5m6nnnaaa4iwmj30rn17nqr4jh"; depends=[gsubfn splancs]; }; @@ -4399,7 +4514,7 @@ in with self; { SplitReg = derive2 { name="SplitReg"; version="1.0.2"; sha256="1s012qldrsq8rpfpzf7kyd7631b65zai269x53xcaqn75r5ssh3f"; depends=[Rcpp RcppArmadillo]; }; SplitSoftening = derive2 { name="SplitSoftening"; version="2.0-1"; sha256="0jk46ymgkjh8jg9b9zzn9490cq92fzchvi2yzqiwisww0k15xlvb"; depends=[]; }; SportsAnalytics = derive2 { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; }; - SqlRender = derive2 { name="SqlRender"; version="1.6.5"; sha256="17hp55fpa54jgxr668d2lq53wd31zr1yz1rzc9hlih47zy9zmac1"; depends=[rJava]; }; + SqlRender = derive2 { name="SqlRender"; version="1.6.8"; sha256="10v2p5law5nqf2bychrbq28albxn9f1aic7cb9lj9pk12w03rpp0"; depends=[rJava]; }; Sstack = derive2 { name="Sstack"; version="1.0.1"; sha256="137vsas2kw3l37c141g51sgx0j6z8ys6hbxjmsdymz1fxsjr4adg"; depends=[doParallel dplyr foreach randomForest]; }; StAMPP = derive2 { name="StAMPP"; version="1.6.1"; sha256="1x6b032xadjn8yq3n662r9f0lyg5xl71q2lksvx8rn5fmpjlqqrs"; depends=[adegenet doParallel foreach pegas]; }; StMoMo = derive2 { name="StMoMo"; version="0.4.1"; sha256="1c4v2gjipq1y4crc6bqvz2x5c02bl10mh9jacg8dqb2dffsh5y44"; depends=[fanplot fields forecast gnm MASS RColorBrewer reshape2 rootSolve]; }; @@ -4407,16 +4522,14 @@ in with self; { StVAR = derive2 { name="StVAR"; version="1.1"; sha256="0wz5f5i9927fs1s8yczwqs022k912220m28l1sv5f0r081iv656i"; depends=[ADGofTest matlab MCMCpack numDeriv]; }; StabilizedRegression = derive2 { name="StabilizedRegression"; version="1.0"; sha256="11hfq13b5rc1jj832msrfb0f3fsklx4clp72aqxfccw0z0n8mdq0"; depends=[corpcor ggplot2 ggrepel glmnet MASS R6]; }; StableEstim = derive2 { name="StableEstim"; version="2.1"; sha256="0agi3bfp1xy5pfxxb9ib6xn434agmplgn7kg47nhbh47vf57vang"; depends=[fBasics MASS Matrix numDeriv stabledist testthat xtable]; }; - Stack = derive2 { name="Stack"; version="2.0-1"; sha256="09fgfhw9grxnpl5yg05p9gvlz38iw4prns1jn14nj3qx01k5rnxb"; depends=[bit ff ffbase plyr stringr]; }; - StagedChoiceSplineMix = derive2 { name="StagedChoiceSplineMix"; version="1.0.0"; sha256="1008gm6zv5k8lpv0qg42qjriajmx0n4kshjh76mvx91dpi788ivh"; depends=[plyr]; }; StakeholderAnalysis = derive2 { name="StakeholderAnalysis"; version="1.2"; sha256="164mah8h8izxaqp8hc43l6mlnf95pydkcx2laqrlqr9b0bybadxb"; depends=[]; }; - StanHeaders = derive2 { name="StanHeaders"; version="2.19.2"; sha256="0cmk0fzczx7dcywcw1dhm6gfq84qlsx77qrsk4z3bf3dhr4bznam"; depends=[]; }; + StanHeaders = derive2 { name="StanHeaders"; version="2.21.0-6"; sha256="1wwcrss4y6xbi81cg6ldhm57wz5paflzzp3yxh8b6shf9l2jla50"; depends=[RcppEigen RcppParallel]; }; StandardizeText = derive2 { name="StandardizeText"; version="1.0"; sha256="0s267k2b109pcdiyd26gm4ag5afikrnnb55d3cs6g2fvzp744hfp"; depends=[]; }; Stat2Data = derive2 { name="Stat2Data"; version="2.0.0"; sha256="1fpp3b4k7x915a9wkpyj4dvvqp0wz7c3lpbh154vrxrdsr712z0k"; depends=[]; }; - StatCharrms = derive2 { name="StatCharrms"; version="0.90.94"; sha256="16056gd3wx5qcm9bnrl8hk8dk85j9ikan2dz4acpsfhpga80vp0n"; depends=[cairoDevice car clinfun coxme gWidgets gWidgetsRGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; }; + StatCharrms = derive2 { name="StatCharrms"; version="0.90.95"; sha256="05sfrg19slqb31ifw7p0fn5722d2r91fx3xlfhvql0z5mq4hykah"; depends=[cairoDevice car clinfun coxme gWidgets2 gWidgets2RGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; }; StatDA = derive2 { name="StatDA"; version="1.7.4"; sha256="1ld7fx1lip54n24r2d9zvd4hri3w02vd174bdi8pi9j5n8xpxl02"; depends=[cluster e1071 geoR MASS MBA mgcv rgl robustbase sgeostat sp xtable]; }; StatDataML = derive2 { name="StatDataML"; version="1.0-26"; sha256="1lcckapbhqdbg6alnhm2yls66lnkxnxamdlzx6pbfqv1dhsy36gf"; depends=[XML]; }; - StatMatch = derive2 { name="StatMatch"; version="1.3.0"; sha256="1ms8qmxgpfa9sk7kl6hpcal14xxn7i84h662va2n045w7p0qmcjw"; depends=[clue lpSolve proxy RANN survey]; }; + StatMatch = derive2 { name="StatMatch"; version="1.4.0"; sha256="0nd4s57rzq4zgi5b7krbdhz9vwxvj5j63kazdyhlwwqk4b6r2042"; depends=[ggplot2 lpSolve proxy survey]; }; StatMeasures = derive2 { name="StatMeasures"; version="1.0"; sha256="1bnbz803xx8kqhy1cx545b35si6f10za0mp5z82qfvd4kv9a9izz"; depends=[data_table]; }; StatPerMeCo = derive2 { name="StatPerMeCo"; version="0.1.0"; sha256="1nm6brlj6h7jx8nqagrfk294ay3pfmkiizabwlb87qfnsfwchpk3"; depends=[]; }; StatRank = derive2 { name="StatRank"; version="0.0.6"; sha256="14d8v3bp8vgksi6q0mxajwd9s8zi6lns3qwi1vcr5xp9rjp4n6iy"; depends=[ggplot2 plyr truncdist]; }; @@ -4427,15 +4540,15 @@ in with self; { StepSignalMargiLike = derive2 { name="StepSignalMargiLike"; version="2.6.0"; sha256="0j85lvs2bljfhf482r31sq3xgk8l73hcw22wgxxp8z8nla38cwf9"; depends=[Rcpp]; }; StepwiseTest = derive2 { name="StepwiseTest"; version="1.0"; sha256="1fdm4s9l6grgd45r98ybbsh40rnmnn16c0id6lv28cpmssi0iphi"; depends=[Rcpp RcppArmadillo]; }; StereoMorph = derive2 { name="StereoMorph"; version="1.6.3"; sha256="0sr8i6hq9iir2f717yvm5kdda047hamsqcrl553jjzzcbxg0y5m1"; depends=[bezier jpeg MASS png Rcpp rjson shiny svgViewR tiff]; }; - StockChina = derive2 { name="StockChina"; version="0.3.1"; sha256="1myxyfchnkskyqb5yciw1wfk3006f51y89ipzfjzdlfyzwy1lsp1"; depends=[]; }; Storm = derive2 { name="Storm"; version="1.2"; sha256="1fg8y9my9yp6px1gh43mr3m2s2z262mzq03pj52mqg3n186vk8z3"; depends=[permute rjson]; }; StrainRanking = derive2 { name="StrainRanking"; version="1.2"; sha256="1r8avm9xajqmsy4x7pgh1yaffq7wl5i5kg75kdilydwmii6n19i0"; depends=[]; }; StratSel = derive2 { name="StratSel"; version="1.3"; sha256="0hd6q8s8aiymcd33kv0gd0a4wzr86xxdzwn18jgpyk9q8pmg8gvl"; depends=[Formula MASS memisc mnormt pbivnorm]; }; Strategy = derive2 { name="Strategy"; version="1.0.1"; sha256="0phja1r0qfvcswvw5w1x6ny86p84wkqb029fdqgw10djdm9xp0f2"; depends=[xts zoo]; }; + StrathE2E2 = derive2 { name="StrathE2E2"; version="3.1.0"; sha256="1j9mx3pi22g62x5ard3vwpcmmh5jwb26rvpsma6xk8qjpbc0yzrf"; depends=[deSolve NetIndices]; }; StratifiedBalancing = derive2 { name="StratifiedBalancing"; version="0.3.0"; sha256="0pklnm0q0imdhyzhwyb4i0j441dkk4k6qqlx8d4q2xnl62drqnvv"; depends=[bnlearn plyr]; }; - StratifiedMedicine = derive2 { name="StratifiedMedicine"; version="0.2.3"; sha256="03hjx3c7gfzsx3frh0k484xakw9ssrar4dlilw2x85m55hsn7v9r"; depends=[dplyr ggparty ggplot2 glmnet mvtnorm partykit ranger survival]; }; + StratifiedMedicine = derive2 { name="StratifiedMedicine"; version="1.0.2"; sha256="0vrymsq4n88c8shh2ragx731kyy75bp823kfzs4ldam4f77fp1pz"; depends=[dplyr ggparty ggplot2 glmnet mvtnorm partykit ranger survival]; }; StratifiedRF = derive2 { name="StratifiedRF"; version="0.2.2"; sha256="0a5djia6xacs17nnr5knr1acwzicrffz73q9nvnhdmihazq8v27d"; depends=[C50 dplyr]; }; - StratigrapheR = derive2 { name="StratigrapheR"; version="1.0.1"; sha256="0b63n91ns4z745nrdrrnjmj1pmqi5plj1fkbh9ix7i6a7bd2n023"; depends=[diagram dplyr shiny stringr XML]; }; + StratigrapheR = derive2 { name="StratigrapheR"; version="1.1.0"; sha256="0njxvphgjws6349cz8f6scpz0wyiahfqkg50z2dall8ia6kszjnh"; depends=[diagram dplyr shiny stringr XML]; }; StreamMetabolism = derive2 { name="StreamMetabolism"; version="1.1.2"; sha256="1sv30i7armk7jhxg5x9lh0r9qq3xixn1k2h0q89halkh1yraal8a"; depends=[chron maptools zoo]; }; StressStrength = derive2 { name="StressStrength"; version="1.0.2"; sha256="1fq26bzmwsk4nzz9bgasyxz9alw8x2ssahz67mham7vw483w79pd"; depends=[]; }; String2AdjMatrix = derive2 { name="String2AdjMatrix"; version="0.1.0"; sha256="058r30kjjna02nmd6ngqfcnn1yk5390i20xvl6qb5qk3bcp2wmxn"; depends=[stringr]; }; @@ -4443,16 +4556,17 @@ in with self; { StructFDR = derive2 { name="StructFDR"; version="1.3"; sha256="1y0wj7y36iq0lznc4qpsr2yis3an34iilpabkaxxmas2q4abg0qb"; depends=[ape cluster dirmult matrixStats nlme]; }; StructureMC = derive2 { name="StructureMC"; version="1.0"; sha256="1pj3inznw6flvmk22dzjcfjnwjhx7r98ngckz0axf6ipp3hb85jn"; depends=[MASS matrixcalc]; }; SubCultCon = derive2 { name="SubCultCon"; version="1.0"; sha256="08q6k4nsv3gl5qk87s87smdg047yc2a4i7kg0fp08i7q7h62jkvz"; depends=[]; }; - SubTite = derive2 { name="SubTite"; version="3.0.1"; sha256="12wbipx024p1wrnvjvv82armji6ryzv15i8yry6kaf49zp6wfxiq"; depends=[Rcpp RcppArmadillo]; }; + SubTite = derive2 { name="SubTite"; version="3.0.2"; sha256="1idp6yra1nznkm3hdv82hvp432lywi8kddk3n227g5216q0pmlcn"; depends=[Rcpp RcppArmadillo]; }; SubVis = derive2 { name="SubVis"; version="2.0.2"; sha256="1nb3zgm6i5lwfwdrn8mk3wkg8a4ldfvs27ai8v46l4316qc1fa9p"; depends=[Biostrings shiny]; }; SubgrPlots = derive2 { name="SubgrPlots"; version="0.1.3"; sha256="1bi5zndkpgvyk563i0jdfrw73kkpa6zi3yx922dv90w6bdb9kvl2"; depends=[alluvial circlize colorspace diagram dplyr ggplot2 ggrepel gridBase gridExtra plyr polyclip scales shape sp survival survRM2 UpSetR VennDiagram]; }; SubgrpID = derive2 { name="SubgrpID"; version="0.11"; sha256="1by23gdkbls7l5xa9nl055nbm0d3138pmfmasqmcy42h62wf7dw6"; depends=[AIM ggplot2 glmnet Matrix rpart survival]; }; SubpathwayGMir = derive2 { name="SubpathwayGMir"; version="1.0"; sha256="1rw94idhbnaszr2xv1wgnjcxlnxkml912pvmqh2a1nqpwca5mscy"; depends=[igraph XML]; }; SubpathwayLNCE = derive2 { name="SubpathwayLNCE"; version="1.0"; sha256="051csjavr9549y54yirfdn266i7swsvpbcakhziyz4sl4afwx5kl"; depends=[BiasedUrn graph igraph RBGL]; }; + SubtypeDrug = derive2 { name="SubtypeDrug"; version="0.1.1"; sha256="02dq2byh4m84pckxzcp5zbj7dd5xv2fawrj711m1wwr310dqddns"; depends=[BiocGenerics ChemmineR devtools GSVA igraph pheatmap rvest xml2]; }; SummaryLasso = derive2 { name="SummaryLasso"; version="1.2.1"; sha256="1gb1g1xgda5psq93vy50yfr0cbhvymliblpkxz7ck1nwpp65n9py"; depends=[gtools]; }; Sunclarco = derive2 { name="Sunclarco"; version="1.0.0"; sha256="0jv92a4ciwkm0wa4irgb6ql3vf6v6p24fmbnk24pqp5p8drp8g5v"; depends=[survival]; }; Sunder = derive2 { name="Sunder"; version="0.0.4"; sha256="1na41nnscyc4v1qbwzfgqk503r39xxbi6f446pscrz3v0v121f1a"; depends=[mnormt]; }; - SunsetTSA = derive2 { name="SunsetTSA"; version="1.0.0"; sha256="1akp84dqihw03b7jga4i8psclss10xsv96ysav1ff9kg81apav8n"; depends=[httr]; }; + SunsVoc = derive2 { name="SunsVoc"; version="0.1.0"; sha256="09czc6z453k7qs5vvslnbdr65h7j1yiy5az56hihwg548i3vcj9y"; depends=[data_table ddiv dplyr magrittr purrr rlang stringr]; }; SunterSampling = derive2 { name="SunterSampling"; version="1.0.1"; sha256="0qfld3j8xlpgp7c58zqw6gzm38m4d740lvdj5vmcflfcc6ja98sf"; depends=[]; }; SupMZ = derive2 { name="SupMZ"; version="0.2.0"; sha256="1n81wqacrpk5x6i1pd1zsjivv2jk41743kg1h7gnp0rb3k58vp7r"; depends=[dplyr magrittr]; }; SuperExactTest = derive2 { name="SuperExactTest"; version="1.0.7"; sha256="1ysfsdzbkldcn7hzxhqikf5h2h9747xhfrirqgr8xx8q81wq989s"; depends=[]; }; @@ -4460,7 +4574,7 @@ in with self; { SuperLearner = derive2 { name="SuperLearner"; version="2.0-26"; sha256="10b0fh71ky92mp0ydi81s6zm3sn47k5agppcg4zpgqmailn94qj4"; depends=[cvAUC nnls]; }; SuperPCA = derive2 { name="SuperPCA"; version="0.3.0"; sha256="139nym0szr7l7hq3xy60jwpx61896h5g7vrklxy7098w53iczyj4"; depends=[fBasics glmnet MASS matlab matlabr Matrix matrixStats pracma psych R_matlab RSpectra spls timeSeries]; }; SuperRanker = derive2 { name="SuperRanker"; version="1.1.1"; sha256="1yiklw9zk7yw0xz5g3lmyl5lv325fnysimdwbxa37nyj6qdfv0ls"; depends=[prodlim Rcpp]; }; - SuperpixelImageSegmentation = derive2 { name="SuperpixelImageSegmentation"; version="1.0.1"; sha256="15d611ik6qg0602n6yk34a1pgfciv42nzd8qaarmxnqqrn8i584n"; depends=[ClusterR OpenImageR R6 Rcpp RcppArmadillo]; }; + SuperpixelImageSegmentation = derive2 { name="SuperpixelImageSegmentation"; version="1.0.2"; sha256="07zg9k8a0fb9x37q5wlahvg4xc0lnhidz0xvly8d330iqmxhxmyq"; depends=[ClusterR lattice OpenImageR R6 Rcpp RcppArmadillo]; }; Superpower = derive2 { name="Superpower"; version="0.0.3"; sha256="0hwlgscygjcqiclgac97ffcmw081g91rvqbd2pj0z0kijz7g597x"; depends=[afex dplyr emmeans ggplot2 gridExtra magrittr MASS mvtnorm reshape2]; }; SuppDists = derive2 { name="SuppDists"; version="1.1-9.5"; sha256="1i3iq12a5x5k49ac01mikzcrrq9gc148xq3m08h4xm07bha6f2v8"; depends=[]; }; SurfaceTortoise = derive2 { name="SurfaceTortoise"; version="1.0.1"; sha256="0q0swp0xs3lmfx2dxffqrna2spyr2l9ka0zbhmw8nkgb1w5rq5q6"; depends=[gstat raster rgeos sp]; }; @@ -4472,30 +4586,33 @@ in with self; { SurvDisc = derive2 { name="SurvDisc"; version="0.1.1"; sha256="0ajvnm0a4krbm0m584bg58hd7dzl0f2rz5as1zsajx8agywb5qmv"; depends=[cubature MASS mvtnorm nlme simex survival]; }; SurvGSD = derive2 { name="SurvGSD"; version="1.0.0"; sha256="0aa5zaf9akkqkxs8iqwnm93sfwakhhhs3qfafbk0vrwmb5yvzzm1"; depends=[flexsurv ldbounds mnormt]; }; SurvLong = derive2 { name="SurvLong"; version="1.1"; sha256="1lkbz5wa6ggwvg2aq13bc4hm6lqsj3wal5c33kamnrg9pk2cssj8"; depends=[]; }; + SurvMI = derive2 { name="SurvMI"; version="0.1.0"; sha256="0qgsgz11vz73v83bkxrrjwk7i26rllkxk97if3nw2rgl9jnmiih0"; depends=[survival zoo]; }; SurvRegCensCov = derive2 { name="SurvRegCensCov"; version="1.4"; sha256="0ipr7lajnrklk963lrlgx946l6r191q3bfif4njkdmw0x797nzm2"; depends=[numDeriv survival]; }; SurvTrunc = derive2 { name="SurvTrunc"; version="0.1.0"; sha256="0b6s7llljp75agd57lmc1yq5acnfwy113khrfjcbm1l5ply6pz7f"; depends=[survival]; }; Survgini = derive2 { name="Survgini"; version="1.0"; sha256="1gxkdv2j1njbgnwb52vyhz7p2lrcg3hp6sry3kyhp4wkvf6gnhxi"; depends=[survival]; }; SvyNom = derive2 { name="SvyNom"; version="1.1"; sha256="1jym2x6nd9a3y7nk5hflqpy54gs67y4sqqspkvkalf5l2cc64did"; depends=[Hmisc rms survey survival]; }; SwarmSVM = derive2 { name="SwarmSVM"; version="0.1-6"; sha256="09xq7jx70qjyhblzh6kc40hdr0636rqqdnbka7m6rawhd8ivp8yz"; depends=[BBmisc checkmate e1071 kernlab LiblineaR Matrix SparseM]; }; - SwimmeR = derive2 { name="SwimmeR"; version="0.2.0"; sha256="0x6vidrha9wj24ync3nyfcyzdjdq4z2yf52h4m3gr5pd3ir9pb8f"; depends=[dplyr ggplot2 magrittr pdftools purrr rvest scales stringr tibble]; }; + SwimmeR = derive2 { name="SwimmeR"; version="0.3.1"; sha256="10jn491rsaknl6fyialm8g4ipckcr1qcaipqxbhszdakmj8hpfpr"; depends=[dplyr ggplot2 magrittr pdftools purrr rvest scales stringr tibble xml2]; }; SwissAir = derive2 { name="SwissAir"; version="1.1.5"; sha256="0lh69924vhyilgn562jqn8m7z4dq3xmdj09501sbs7hbxfaiiyly"; depends=[]; }; SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; }; + SyScSelection = derive2 { name="SyScSelection"; version="1.0.1"; sha256="1q2w21qdw9dcjdfrngbdk50arm8jmrccbhqpnbp2gypnxv4pic1y"; depends=[pracma]; }; SymTS = derive2 { name="SymTS"; version="1.0"; sha256="17vhm00zd9yxl6li36bsfkm4rsizjsm93ibrzgqnkl72sqmmlwfi"; depends=[]; }; - SympluR = derive2 { name="SympluR"; version="0.3.0"; sha256="0a3irbk5bh3af8rv4l4sh3ymj3icyqjv5akzmx6rrp6pr3mgq6c6"; depends=[httr jsonlite plyr readr]; }; SyncMove = derive2 { name="SyncMove"; version="0.1-0"; sha256="1jlnsj5v8y5pijfkww7ng7nkwvj93naw29wcxxj130ww5qk7qk1z"; depends=[]; }; SyncRNG = derive2 { name="SyncRNG"; version="1.3.0"; sha256="0sywfmmy6mq6qsxkxjc67665snn1jds01j3h7ni1200igja139g2"; depends=[]; }; SynchWave = derive2 { name="SynchWave"; version="1.1.1"; sha256="127hllvig8kcs9gr2q14crswzhacv6v2s4zrgj50qdyprj14is18"; depends=[fields]; }; Synth = derive2 { name="Synth"; version="1.1-5"; sha256="1cfvh91nz6skjk8jv04fhwv3ga9kcsfgq3mdy8lx75jkx16zr0pk"; depends=[kernlab optimx]; }; SynthTools = derive2 { name="SynthTools"; version="1.0.1"; sha256="19vasz3nnm5vgwqs6g2a5bibmk44br1bxga5zavsx938x3jw9gnd"; depends=[dplyr magrittr Rdpack]; }; + SystemicR = derive2 { name="SystemicR"; version="0.1.0"; sha256="1vk08w734zxvrwzd81iy0azwcj53k6wvgc1qlaxw96hirdwdg6zr"; depends=[igraph Matrix quantreg xts]; }; T2EQ = derive2 { name="T2EQ"; version="1.1"; sha256="1skkkryw63pfx1xslia1lczb2psja6v6hcbph4isdcksb4l4pcig"; depends=[]; }; TAG = derive2 { name="TAG"; version="0.2.0"; sha256="0s4n2f9x36df1pb5p8n98926lgg9z79fka5r9xqxxsc91h35q9aw"; depends=[DiceKriging doParallel FastGP Matrix mgcv mlegp randtoolbox Rcpp RcppArmadillo]; }; - TAM = derive2 { name="TAM"; version="3.4-26"; sha256="111d7qkxhwh1lfvldyh9d61pdb5vb6x8lr8n9h95ssvw07vjqvk9"; depends=[CDM Rcpp RcppArmadillo]; }; + TAM = derive2 { name="TAM"; version="3.5-19"; sha256="1x1pdy0hrk4c3x5l4gcslpvyb0sv2zgly4n3a7y8j6yrzajx0sg7"; depends=[CDM Rcpp RcppArmadillo]; }; TANDEM = derive2 { name="TANDEM"; version="1.0.3"; sha256="151rm95q2naw9y58df1lr2qiadnkgfb5j9v47v41bw4iipsmlp4p"; depends=[glmnet Matrix]; }; TAQMNGR = derive2 { name="TAQMNGR"; version="2018.5-1"; sha256="0bf0sgqa53l9y2bhwg2ngiwlcgrmj0nvxchlsmcc8zin388qf4pb"; depends=[Rcpp]; }; TAR = derive2 { name="TAR"; version="1.0"; sha256="0wjh2n9x3yn9by9a6mjvkl96qy7z549g6dsqp7b4d96xwmyqxlbv"; depends=[mvtnorm]; }; TAShiny = derive2 { name="TAShiny"; version="0.1.0"; sha256="1h8k8py7myrj7c18cbp4q7bmgmck64jagw9s9j1jaqzl9qf8cbgq"; depends=[dplyr igraph shiny SnowballC tm wordcloud2]; }; TBEST = derive2 { name="TBEST"; version="5.0"; sha256="15piy507vv8x59xgga17splxszy0vm87qjbfgxycvba633jishsa"; depends=[fdrtool signal]; }; TBFmultinomial = derive2 { name="TBFmultinomial"; version="0.1.3"; sha256="0cd0dr8vkf0sfriaafp2x63dilxmirm0fljxm82zw77c9j5ly3kv"; depends=[nnet plotrix stringr VGAM]; }; + TBRDist = derive2 { name="TBRDist"; version="1.0.1"; sha256="08100f7mswsc9x3h1sf9mibbdh84hwn77mz51a4npxydhkj1bszd"; depends=[ape BH Rcpp TreeDist TreeTools]; }; TBSSurvival = derive2 { name="TBSSurvival"; version="1.3"; sha256="1r87qvnlvc18i12yi25lfpdb8b5p33fywi38hs2xp1y2vbvz5s9b"; depends=[BMS coda mcmc normalp R_utils Rsolnp survival]; }; TCA = derive2 { name="TCA"; version="1.1.0"; sha256="0pj052kd378x1gmg5wcbk8c0dca3c2ra65hnagljmsplv169vimy"; depends=[config data_table futile_logger glmnet gmodels Matrix matrixcalc matrixStats nloptr pbapply pracma quadprog rsvd]; }; TCGAretriever = derive2 { name="TCGAretriever"; version="1.5"; sha256="1xg1rz2h5jbpdd5axli3ripqxb0bj64yrd4y5nzr8axajiaybkj9"; depends=[httr]; }; @@ -4518,19 +4635,17 @@ in with self; { TFMPvalue = derive2 { name="TFMPvalue"; version="0.0.8"; sha256="0h9qkl15k8v17v3g9bdnfwvh2s04ywjgg5y0xn2077dmywlja1bd"; depends=[Rcpp]; }; TFX = derive2 { name="TFX"; version="0.1.0"; sha256="0xrjdbvg0ng4i0s8ql1pfyma10x4n045spilkb05750677r5j44p"; depends=[XML]; }; TFisher = derive2 { name="TFisher"; version="0.2.0"; sha256="0vz74ww1lf1prfwz74hfsi3a8nzq8ss7aqjr85c1d87vss2796xx"; depends=[Matrix mvtnorm sn]; }; - TGS = derive2 { name="TGS"; version="1.0.0"; sha256="0x3a8c02zibqh57sr79gk792m6dsxgzmqpk73lflvg1l2s3r6zf8"; depends=[bnstruct doParallel foreach ggm minet rjson]; }; + TGS = derive2 { name="TGS"; version="1.0.1"; sha256="01mwdlgfjlxy0q5lxcmzk6lsb806987va7yag0zpjjd2bzmdh70k"; depends=[bnstruct doParallel foreach ggm minet rjson]; }; TH_data = derive2 { name="TH.data"; version="1.0-10"; sha256="0mgz7aj2d9abbmdr65zgmg1ddp3fdbs3mfj83r5xadh5ldkir2k1"; depends=[MASS survival]; }; TIMP = derive2 { name="TIMP"; version="1.13.2"; sha256="1y1bc6wsd32792apsc6qncxbw5y8ww9xlhy9v49mhwbffgzn6llg"; depends=[colorspace deSolve fields gclus gplots minpack_lm nnls]; }; TITAN2 = derive2 { name="TITAN2"; version="2.4"; sha256="1ai4mr69iwl8lliy1zak73s3a4skny4w09clh4z1ri7r5fmq1c2q"; depends=[cowplot dplyr ggplot2 ggridges glue purrr snow tibble]; }; TInPosition = derive2 { name="TInPosition"; version="0.13.6.1"; sha256="1c0h9zg71whmsjn5rnzv5kdrabl9kqrq627caznvrpa74c7pjks9"; depends=[ExPosition InPosition prettyGraphs TExPosition]; }; - TKF = derive2 { name="TKF"; version="0.0.8"; sha256="1db87lwx26ayv1x2k8qd9dfr6j3jkvdl9ykisaxr42l6akqy21nr"; depends=[ape expm numDeriv phangorn phytools]; }; TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; }; TLMoments = derive2 { name="TLMoments"; version="0.7.5"; sha256="0v86rs7f63f59ng9m6lnjgv52czg1xk814flnhz153fjy7y2pidl"; depends=[ggplot2 hypergeo Rcpp]; }; - TLdating = derive2 { name="TLdating"; version="0.1.3"; sha256="12lmakk1zd6wqh1318pnl14i7km2hynjn4ymchfjr2bwmp45c1ra"; depends=[gplots Luminescence]; }; - TMB = derive2 { name="TMB"; version="1.7.16"; sha256="0lly12hdi99iklwr0vg9xkyhi038w4gncbf895qcwbndmqp0lx44"; depends=[Matrix RcppEigen]; }; + TMB = derive2 { name="TMB"; version="1.7.18"; sha256="0dbps92sni9rnynj31z9zhg6l0vbczxhzlw7gnhpxjlzfnsglp3y"; depends=[Matrix RcppEigen]; }; TMDb = derive2 { name="TMDb"; version="1.1"; sha256="062n9mi2f9g2xxpnymja57xnpl855d8mwyfwci7a8cq4c7w7avj7"; depends=[httr jsonlite stringi]; }; TNC = derive2 { name="TNC"; version="0.1.0"; sha256="0639wvylmk9mapvmz79ij65g1phv3ylc683awi4pgaf9yfwlmjkn"; depends=[]; }; - TOC = derive2 { name="TOC"; version="0.0-4"; sha256="1c16d4wrzir6v3c323sck6r9yz6mv1a70xamlj5ha1ydmfixcza9"; depends=[bit raster rgdal]; }; + TOC = derive2 { name="TOC"; version="0.0-5"; sha256="0zk6j1yc4gpvkswnfrlyfvqc69wr4q3ys59y7v03fhzwasqj0an2"; depends=[bit raster rgdal]; }; TOHM = derive2 { name="TOHM"; version="1.3"; sha256="08qwqryy9vdh906k3rhq4csysxlxgki4jjr505shfrxjvnlc662i"; depends=[EQL igraph Matrix nloptr Rmpfr]; }; TOSTER = derive2 { name="TOSTER"; version="0.3.4"; sha256="1pxcvlw2nhh1sv0d662xc61rykf7kz7f4xjq3yrqf119gjcmps5s"; depends=[ggplot2 jmvcore R6]; }; TP_idm = derive2 { name="TP.idm"; version="1.5"; sha256="07rxn0mpar3p6blg8fd3kbvdngyz9h9n0r0lcljnfdajfzbysv7h"; depends=[]; }; @@ -4538,13 +4653,11 @@ in with self; { TPEA = derive2 { name="TPEA"; version="3.1.0"; sha256="1yyc3q4dyf4d8m7wi851dnxf3xnvvfnvj28kl8z8py4r4jsb2hfy"; depends=[foreach igraph Matrix MESS RCurl XML]; }; TPES = derive2 { name="TPES"; version="1.0.0"; sha256="00g1limcappjrly93x7xb1llrgaxivmiky3kw40w2fs0303ha3d7"; depends=[]; }; TPmsm = derive2 { name="TPmsm"; version="1.2.2"; sha256="1ibb3ayd808x3a562qldaww7czmfq1cd1j4g4ch5k7q38jw5x835"; depends=[KernSmooth]; }; - TR8 = derive2 { name="TR8"; version="0.9.20"; sha256="01xkjl269q1qlpm8cxpnb64czcv2xhrjjwp3brhxywx07za1q8lq"; depends=[gWidgets gWidgetstcltk plyr rappdirs RCurl readxl reshape taxize XML]; }; + TR8 = derive2 { name="TR8"; version="0.9.21"; sha256="0zmbzqvsv7ipbhj7gavvdmcblc2ls057n56zizjn5crls7c6jxbm"; depends=[plyr rappdirs RCurl readxl reshape shiny taxize XML]; }; TRADER = derive2 { name="TRADER"; version="1.2-3"; sha256="1w9m2b866dyj82s118m64q8j9a1chpq2km2pnn9mfwwj8sivgdgn"; depends=[dplR]; }; TRAMPR = derive2 { name="TRAMPR"; version="1.0-9"; sha256="16fbzp6b6y25k9h7m4qpmbgj10przywm2rh8kvw8a8p0xkskc9k5"; depends=[]; }; TRD = derive2 { name="TRD"; version="1.1"; sha256="0bhn4bcrq39f5dgqc74jqsfhs1iqfxhawacqqyncbk2372013nqp"; depends=[Rlab]; }; - TRES = derive2 { name="TRES"; version="1.1.1"; sha256="0fx52911sjqlgkj3ad8frj3xnd2jlzmzcian9qj3hkmpyjx65648"; depends=[ManifoldOptim MASS pracma rTensor]; }; - TRSbook = derive2 { name="TRSbook"; version="1.0.2"; sha256="0lj20i6gybinc196nzjfi6ayzmm970s9vp43lj60v96g5dl7qv1b"; depends=[gdata IndependenceTests RColorBrewer xtable]; }; - TSA = derive2 { name="TSA"; version="1.2"; sha256="0gjfqibwdznz0nka95k4fjm935svxjpnqfywwz403crn2lh30h6q"; depends=[leaps locfit mgcv]; }; + TRES = derive2 { name="TRES"; version="1.1.2"; sha256="1v2bs111h603s57wphaadq7wb6a27n8cm0yg69n51v0z0zy9n39n"; depends=[ManifoldOptim MASS pracma rTensor]; }; TSCS = derive2 { name="TSCS"; version="0.1.1"; sha256="0dllaw69rl26hgqac5q66k13gfmnxhn3wf0j8nx5xvi7yclzc3ay"; depends=[ggplot2 rgl tseries]; }; TSDFGS = derive2 { name="TSDFGS"; version="1.0"; sha256="1wk1j0bzcapp2pknhiichh947xs6dpkrfr2h7s1vqyzb9a0yajif"; depends=[Rcpp RcppEigen]; }; TSDT = derive2 { name="TSDT"; version="1.0.0"; sha256="0cscy8g6qab09lgzdpz9s85l7m7v5gnjf0n3h82730xzd50r4za7"; depends=[hash mlbench modeltools party rpart survival survRM2]; }; @@ -4564,35 +4677,34 @@ in with self; { TSP = derive2 { name="TSP"; version="1.1-10"; sha256="0z1v6m0vqjzxc4az3zyjaayygx0jr3mdmc56jjd421iqh0b9z5s4"; depends=[foreach]; }; TSPostgreSQL = derive2 { name="TSPostgreSQL"; version="2015.4-1"; sha256="11201zpbrva6gwc9hg8pynadrps6d8pb3syzba9nyjpv2ck6x3ry"; depends=[DBI RPostgreSQL tframe tframePlus TSdbi TSsql]; }; TSPred = derive2 { name="TSPred"; version="4.0"; sha256="0zjx33llkvvj7m4z16crybw0y6s6zvlblxn2in3j7v9cv0ihhsa8"; depends=[EMD forecast KFAS MuMIn vars wavelets]; }; - TSS_RESTREND = derive2 { name="TSS.RESTREND"; version="0.2.13"; sha256="0wbwkhc1b5dql87sj1441cknidpgwcflwlid2yj6d64a6wsipn1l"; depends=[bfast broom ggplot2 RcppRoll strucchange]; }; + TSS_RESTREND = derive2 { name="TSS.RESTREND"; version="0.3.1"; sha256="1la1ff9ajcabdsz5f2761647304fpwp779gv0gjds4mg25rf6n2f"; depends=[bfast broom ggplot2 mblm RcppRoll strucchange]; }; TSSQLite = derive2 { name="TSSQLite"; version="2015.4-1"; sha256="10z8s967wmapkb56hh2brb5bafgqr8flwh0sr72yqqv0ca2d06sc"; depends=[DBI RSQLite tframe tframePlus TSdbi TSsql]; }; TSSS = derive2 { name="TSSS"; version="1.2.4"; sha256="0g9viv761hvwsv8c37cpy9v6y3qs8nnkzpfccxp169vvyhs2ixkv"; depends=[]; }; TSTr = derive2 { name="TSTr"; version="1.2"; sha256="0nljkqsrwzg7i82arpfrz2k9m1k1akin1akf01c5cadxq4rgarsf"; depends=[data_table stringdist stringr]; }; TSTutorial = derive2 { name="TSTutorial"; version="1.2.3"; sha256="0hpk6k3lc72p8pdz5aad04lcjsz9k443h5gs09dc3i10wqw3yhxs"; depends=[MASS]; }; - TSVC = derive2 { name="TSVC"; version="1.2.0"; sha256="0w7987p8j7waaqcx6wx9wvxypbf0r5nn34fwlg3z7gwn4fkl3pwc"; depends=[mgcv plotrix]; }; - TSclust = derive2 { name="TSclust"; version="1.2.4"; sha256="0dh6bybr5298cjz9fxfz7wbkp7f45d3r2zl9fb0wgngb6bd0cwfl"; depends=[cluster dtw KernSmooth locpol longitudinalData pdc wmtsa]; }; + TSVC = derive2 { name="TSVC"; version="1.2.1"; sha256="11qivqrss54mzgkma0bkjrpiks5rxc43bmygp6i4chka45k8xiq3"; depends=[mgcv plotrix]; }; + TSclust = derive2 { name="TSclust"; version="1.3.1"; sha256="1pj984sf7z0bakr55jqcrxr4mh4gihdv197m2k05phpp5hsplsjh"; depends=[cluster dtw forecast KernSmooth locpol longitudinalData pdc]; }; TScompare = derive2 { name="TScompare"; version="2015.4-1"; sha256="0jmxnrbsdg368f29bp70rc9i88si5zjblbcn8rcjyn2k9vpd3q2f"; depends=[DBI tfplot tframe TSdbi]; }; TSdata = derive2 { name="TSdata"; version="2016.8-1"; sha256="199dy4phc6z0kzbp4kks55519c3xgsx4dkwrypr9sg8xhprrwnib"; depends=[]; }; TSdbi = derive2 { name="TSdbi"; version="2017.4-1"; sha256="0vwx2wyls4byyp67q9bp1psxdq5jnlimwk2162khk6daaxs14aiv"; depends=[DBI tframe]; }; - TSdist = derive2 { name="TSdist"; version="3.6"; sha256="13asbgak6p0zyfigz1j2paw7qm2l02186cgblixrcp6jj8q8mm0l"; depends=[cluster dtw KernSmooth locpol longitudinalData pdc proxy TSclust xts zoo]; }; TSeriesMMA = derive2 { name="TSeriesMMA"; version="0.1.1"; sha256="0dkrz3m5lh872c0q9nw4h0p6g4j1j9fn92hz8xlifpsbsyzpz63b"; depends=[]; }; TSfame = derive2 { name="TSfame"; version="2015.4-1"; sha256="197v123mkxr7qlksnb5iadms5zbc8xqbpgr2cspb8x1krz6phssz"; depends=[DBI fame tframe tframePlus tis TSdbi]; }; TSmisc = derive2 { name="TSmisc"; version="2016.8-1"; sha256="0xvn6qlvvdc65l356r8b5ppddjd35k9fc4b5w5wn3j5wzxfllbk1"; depends=[DBI gdata quantmod tframe tframePlus TSdbi tseries zoo]; }; TSodbc = derive2 { name="TSodbc"; version="2015.4-1"; sha256="0m6r97gs483jg6jlmfkbzxg3jvf6q140kvpidjccj224zb1sqlcq"; depends=[DBI RODBC tframe tframePlus TSdbi TSsql]; }; - TSrepr = derive2 { name="TSrepr"; version="1.0.4"; sha256="1dskk23465gw07bnhq0rf3gig4v69z2w2yzh9wdyfkw0i7vk876g"; depends=[dtt MASS mgcv quantreg Rcpp wavelets]; }; + TSrepr = derive2 { name="TSrepr"; version="1.1.0"; sha256="1bplh808byfi86rz2bs1ikiggg0a1k0z282vidhygvl927hz2fa4"; depends=[dtt MASS mgcv quantreg Rcpp wavelets]; }; TSsdmx = derive2 { name="TSsdmx"; version="2016.8-1"; sha256="06h1iwgshiq4bvly5l1nrddrh2knc82z2aqxh8ls9ipbs7qjsvaf"; depends=[DBI rJava RJSDMX tframe tframePlus TSdbi]; }; TSsmoothing = derive2 { name="TSsmoothing"; version="0.1.0"; sha256="1m4y6hfw5ghqmvbnha05w6k0abbr08xdcahmh897g68b06vcrjsl"; depends=[ggplot2 gridExtra MASS Matrix]; }; TSsql = derive2 { name="TSsql"; version="2017.4-1"; sha256="0f71q6gqfx4r3ghsmr572cvkpmf2xf7kipf10ii99z1y23dxmsdn"; depends=[DBI tframe tframePlus TSdbi zoo]; }; TSstudio = derive2 { name="TSstudio"; version="0.1.6"; sha256="1r45s4xgc9a2rdh225xzmwr7g6qahmjj7v1a6g7haghnhaq6hv4s"; depends=[data_table dplyr forecast forecastHybrid future future_apply lubridate magrittr plotly purrr RColorBrewer reshape2 scales tidyr tsibble viridis xts zoo]; }; - TTAinterfaceTrendAnalysis = derive2 { name="TTAinterfaceTrendAnalysis"; version="1.5.5"; sha256="1l2sc4mphk440jxc9sgryqcqr9kwh00fdizswrsria25fbg0nzl4"; depends=[e1071 lubridate multcomp mvtnorm nlme pastecs relimp reshape rkt tcltk2 zoo]; }; + TTAinterfaceTrendAnalysis = derive2 { name="TTAinterfaceTrendAnalysis"; version="1.5.6"; sha256="1jkjivfg0k6rd6dn1apxyqdwzkxwvkg8zsm4hd6vlrk98ph9d1h3"; depends=[e1071 lubridate multcomp mvtnorm nlme pastecs relimp reshape rkt stlplus tcltk2 zoo]; }; TTCA = derive2 { name="TTCA"; version="0.1.1"; sha256="16slr4c2nwbchsg6fk5prq22p2v4cjxzk93wd3xggav2lzrf8a5h"; depends=[MASS Matrix quantreg RISmed tcltk2 VennDiagram]; }; - TTR = derive2 { name="TTR"; version="0.23-6"; sha256="0rg22ma3x07s9djlxscfw5jcq1gbir05cwhgvwfi53x1sf4hmhdg"; depends=[curl xts zoo]; }; + TTR = derive2 { name="TTR"; version="0.24.0"; sha256="0dcmfr98bxhdhszsdr1yjhvy4kplnfm88fh8sdzrkjank1qsxia2"; depends=[curl xts zoo]; }; TTS = derive2 { name="TTS"; version="1.0"; sha256="0dhxj474dqjxqg0fc2dcx8p5hrjn9xfkn0rjn2vz3js92fa9ik9h"; depends=[mgcv sfsmisc]; }; TTmoment = derive2 { name="TTmoment"; version="1.0"; sha256="0a4rdb4fk1mqnvvz0r15kni0g5vcj4xkkcwwv7c2gxc94xh5i5ih"; depends=[mvtnorm]; }; - TULIP = derive2 { name="TULIP"; version="1.0"; sha256="0v0qnhlgj31mdl8xhhcbdlnmfcfn2scpr0bf2jxkxpyxiavqdfxy"; depends=[glmnet MASS Matrix tensr]; }; + TULIP = derive2 { name="TULIP"; version="1.0.1"; sha256="0kwkyv266pslsb2rpcri8k3jmhb3p4i7z0axdbx51l2cxglw9pzn"; depends=[glmnet MASS Matrix tensr]; }; TUWmodel = derive2 { name="TUWmodel"; version="1.1-1"; sha256="1am3ywcj1rqgz5i2g9c6d6fgiv8b2nabllfy84xx1n18pin7mfbk"; depends=[]; }; - TVMM = derive2 { name="TVMM"; version="2.0"; sha256="1ijrni80i4d4mli5c8rf9jmazs3hanhvhhk20fjgalk94zvbp7md"; depends=[MASS robustbase]; }; - Taba = derive2 { name="Taba"; version="0.1.1"; sha256="0dm2wi8k8gligb8j31xr6n95nplq669s7brn9xfnxxmmrmjlvlrl"; depends=[robustbase]; }; + TVMM = derive2 { name="TVMM"; version="3.1"; sha256="014afshwmj4xjqxb7j1fxanag54g7cx2h9wm75i6paq48bpz7150"; depends=[DescToolsAddIns ggplot2 gridExtra MASS robustbase tcltk2 tkrplot]; }; + Taba = derive2 { name="Taba"; version="0.2.0"; sha256="0ciczkjm33pr52s9awqmk9dh0qd20jh43g04xk0zphgq8fmhkl20"; depends=[robustbase]; }; Table1Heatmap = derive2 { name="Table1Heatmap"; version="1.1"; sha256="1nrabjivfsdhaqmlq365pskkrp99jqsxn8vy03mdnqn5h5zv7wvx"; depends=[colorRamps]; }; TableHC = derive2 { name="TableHC"; version="0.1.2"; sha256="1il86xjc4h1sdq3gpi4s7xbkcgzpgfqy5ivzjdkbq45d06pssk21"; depends=[]; }; TableMonster = derive2 { name="TableMonster"; version="1.7"; sha256="1xa4bkcpzhm50dwbpya346swjjfw46n2x26xm30p8gppilg5c0lb"; depends=[xtable]; }; @@ -4619,7 +4731,6 @@ in with self; { Temporal = derive2 { name="Temporal"; version="0.2.0"; sha256="114ld41l2dipw7cpyh7fy3n332v1dkiqvdng6vkk9wm6jmda7wya"; depends=[expint numDeriv plyr Rcpp RcppArmadillo]; }; Tendril = derive2 { name="Tendril"; version="2.0.4"; sha256="1wvczfklsccs8jd081vb6d6h7i35lhf6na925fm7wq8ars0b23wd"; depends=[dplyr ggplot2 magrittr plotly plyr reshape2 scales]; }; Ternary = derive2 { name="Ternary"; version="1.1.4"; sha256="0js2ylif6171f1548d05lfw4kdlqkmqa6a510x6i9px93bvvkhsq"; depends=[viridisLite]; }; - TestCor = derive2 { name="TestCor"; version="0.0.1.1"; sha256="1rxw5rz687ax3zlpaxb9bak6dd2jdl49h3fdzbz7r8vycwanwydq"; depends=[MASS Rcpp]; }; TestDataImputation = derive2 { name="TestDataImputation"; version="1.1"; sha256="10b1g9m2s6nbs8lrpcx3s1jf0fmqyd07mg3vx1pnma8r3vwy1yh7"; depends=[Amelia mice]; }; TestDesign = derive2 { name="TestDesign"; version="1.0.2"; sha256="1vz0bbbk74g3i4dlsd972n41mf0dhd74f9p2n47mgs3fh1r598zd"; depends=[crayon foreach logitnorm lpSolve Matrix Rcpp Rdpack]; }; TestDimorph = derive2 { name="TestDimorph"; version="0.3.1"; sha256="163swi09d3nhgp4zkic7gmh302955jm1qr0dv9l3ciyayrc8z842"; depends=[caret corrplot DescTools dplyr ggplot2 klaR MASS multcompView plotROC plyr purrr randomForest reshape2 Rfast rlang stringr tibble tidyr tmvtnorm truncnorm]; }; @@ -4629,6 +4740,7 @@ in with self; { TexExamRandomizer = derive2 { name="TexExamRandomizer"; version="1.2.3"; sha256="0l0vpx4rkib2m8hwhwy9j8pqyf7gpb9qg8wpnh3238snwpadgy3a"; depends=[assertthat jsonlite Rcpp stringr]; }; TexMix = derive2 { name="TexMix"; version="0.5.3"; sha256="0qp7rlw4y2kw6bvh3rwy33p1g404q4ar1gg8ycdapwsyckq76nhn"; depends=[classInt Formula maptools RColorBrewer sp]; }; TextForecast = derive2 { name="TextForecast"; version="0.1.2"; sha256="0yj2m22imzllz07wx04nar2mfpyl06jiq0ya1nwgaq74kaiym42p"; depends=[doParallel dplyr forcats ggplot2 glmnet Matrix pdftools plyr pracma RColorBrewer tidyr tidytext tm udpipe wordcloud]; }; + TextMiningGUI = derive2 { name="TextMiningGUI"; version="0.1"; sha256="0s6zng4zl5iqyrqs824103hc2rgbnd301bz8npbfassk91wrib3n"; depends=[dplyr ggplot2 ggwordcloud RColorBrewer slam syuzhet tibble tidyr tidytext tkrplot tm]; }; ThankYouStars = derive2 { name="ThankYouStars"; version="0.2.0"; sha256="0r77ns3102wj1wvrfsa06l427imxyfhigpbs36cdxl2j87qrjzl6"; depends=[httr jsonlite]; }; ThermIndex = derive2 { name="ThermIndex"; version="0.2.0"; sha256="0s9d55577dq61qixwwfwmqc2k2c8my00j2ng97ng42cw0jc7aylm"; depends=[]; }; Thermimage = derive2 { name="Thermimage"; version="4.0.1"; sha256="021kjmy0ilg033gf9l46dqfsyd0625v21mcc3sj2smv2dipr8hwd"; depends=[png tiff]; }; @@ -4645,7 +4757,7 @@ in with self; { TideHarmonics = derive2 { name="TideHarmonics"; version="0.1-1"; sha256="1g1v99gh6mns4l8ipmw7kpalbk07m92ybcqjq7b0wsjmdvs1y67s"; depends=[]; }; TideTables = derive2 { name="TideTables"; version="0.0.2"; sha256="1grm9s9np7xs2d8gql4sgg72rxpxiidw6g1ni8q97qgqr7r3105l"; depends=[chron data_table]; }; Tides = derive2 { name="Tides"; version="2.1"; sha256="0da3z010ali83qf8mf1znicqv8vvsa5r93mc40ax60ln2w33nlrm"; depends=[]; }; - TileManager = derive2 { name="TileManager"; version="0.3.0"; sha256="1my9ljgr7j9qvgc2f2qj7d8m0yp0jq8xhq31jc6mnzbsppmr1q6n"; depends=[APfun raster rgeos sp]; }; + TileManager = derive2 { name="TileManager"; version="0.4.0"; sha256="0kc3wgk5n8cxg901c19fjfzq7na46jq0x3gy22fi4jccjb0vgv0v"; depends=[APfun raster rgeos sp XML]; }; TimeProjection = derive2 { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate Matrix timeDate]; }; TimeSeries_OBeu = derive2 { name="TimeSeries.OBeu"; version="1.2.4"; sha256="0ihigrbdkfbqqjxqfx3y5q8ii8n60301s7190jr50a88l1xzgmh8"; depends=[forecast jsonlite locfit trend tseries]; }; TimeVTree = derive2 { name="TimeVTree"; version="0.3.1"; sha256="124kg9zcq4b2j4qvg9f6gykbmzf69qjnnw54nv213ip2h4rdkv32"; depends=[survival]; }; @@ -4653,47 +4765,48 @@ in with self; { Tinflex = derive2 { name="Tinflex"; version="1.5"; sha256="15nbzr3q8rfrqywvlqi48r30fgq4lhlhp1fbnf12j49k6q2aixb1"; depends=[]; }; TipDatingBeast = derive2 { name="TipDatingBeast"; version="1.1-0"; sha256="07lw6jnr76qrxwrwv90hi5ih2xf6g4sz4hfapk5vf1y3ayfskkl0"; depends=[DescTools mclust TeachingDemos]; }; Tlasso = derive2 { name="Tlasso"; version="1.0.1"; sha256="0flx4l7q3qndp77349ayfrszyim7mvs7yfvv3j9a1mhf3gdn9j14"; depends=[expm huge igraph rTensor]; }; - TmCalculator = derive2 { name="TmCalculator"; version="1.0.0"; sha256="067xcpik00r6cdb4q1z09dgdqacyxqg21xn9nzvqfnp6s3nw6a9s"; depends=[]; }; + TmCalculator = derive2 { name="TmCalculator"; version="1.0.1"; sha256="1h1dk4kq6zi3a9wi6bxsqz3b9jk740811dp65sb6lqc668xy5mps"; depends=[]; }; Tmisc = derive2 { name="Tmisc"; version="0.1.22"; sha256="0h25k5xs8wnyzhl8alzlwircdl1hmclljjpcapnfg7na4yskzsaq"; depends=[dplyr rstudioapi tibble]; }; Tnseq = derive2 { name="Tnseq"; version="0.1.2"; sha256="1n76yzk15p8i5bp3k6fszmdqk2d791r4sb8hg5hb61zb92r7wqlj"; depends=[Biobase Ckmeans_1d_dp DESeq edgeR limma]; }; TooManyCellsR = derive2 { name="TooManyCellsR"; version="0.1.1.0"; sha256="0cypjf4a9q2kw4gwxlr59nbwn25wrrhrcmpksxi2yhd3qhk71q8n"; depends=[cowplot ggplot2 imager jsonlite Matrix]; }; - ToolsForCoDa = derive2 { name="ToolsForCoDa"; version="1.0.2"; sha256="0x05phwm6gqw1pmars1ypg86sggflffw9g2d0lc5gfsy93nrg0rv"; depends=[calibrate HardyWeinberg MASS]; }; - TopKLists = derive2 { name="TopKLists"; version="1.0.6"; sha256="1hmm9g68scq8sqdb9axqn51p00mx6p6lw0fdgjljfi2q72xcqhq3"; depends=[gplots Hmisc]; }; + ToolsForCoDa = derive2 { name="ToolsForCoDa"; version="1.0.5"; sha256="0pg8ymim9pbbmnqnvws1v7g874mv65s1idb4m7dcy800v63pzq7s"; depends=[calibrate MASS robCompositions]; }; + TopKLists = derive2 { name="TopKLists"; version="1.0.7"; sha256="0xwp926l8mr0j3lfxy2077d1qs150iid6v7i7015wqzif948jkxz"; depends=[gplots Hmisc]; }; TopicScore = derive2 { name="TopicScore"; version="0.0.1"; sha256="1x6s3yn25rj8mbd25yi7f2rz0nwg8n0l1vs6r250kyjb17d2javm"; depends=[combinat Matrix quadprog RSpectra slam]; }; TotalCopheneticIndex = derive2 { name="TotalCopheneticIndex"; version="1.0.1"; sha256="0yc21vs10rzmwx0z6d0gyyncr25835vb7wpn392csc5big6d73xc"; depends=[memoise]; }; TouRnament = derive2 { name="TouRnament"; version="0.2.5"; sha256="09i0frzzxi5ymjlvh81rmisxh35amrvhxbkjq5351fhlpf1n977z"; depends=[]; }; - TraMineR = derive2 { name="TraMineR"; version="2.2-0"; sha256="1xnhj5348kp7kg1cqiqm7s4v8yb4n7gxn17xg5qnnypca58szbpf"; depends=[boot cluster Hmisc RColorBrewer]; }; - TraMineRextras = derive2 { name="TraMineRextras"; version="0.4.7"; sha256="0lls9683jq0ws62sqfj3zm1v2v3ymn0flpkv3iwqb5i84mj63aq6"; depends=[cluster RColorBrewer survival TraMineR]; }; + TraMineR = derive2 { name="TraMineR"; version="2.2-0.1"; sha256="1mpwns17iqs7wkk6hb9xxphmh0zrbvqxzvhr093b9j1ji4wzhgqj"; depends=[boot cluster colorspace Hmisc RColorBrewer]; }; + TraMineRextras = derive2 { name="TraMineRextras"; version="0.6.0"; sha256="00g0as69v92azajbcbkhr6lwihlphzpb41la5wz2lfvshq5ywqz1"; depends=[cluster gtools RColorBrewer survival TraMineR]; }; TrackReconstruction = derive2 { name="TrackReconstruction"; version="1.2"; sha256="1kpdiwwzxsdwv5255xlvcnxvnp39ky0aws41g1l5i7cpbv88kca5"; depends=[fields RColorBrewer]; }; - Trading = derive2 { name="Trading"; version="2.0"; sha256="1n7m7kd539hpii2xvzhsg4zw4bgb63mh0k99fwk588wf19i0cywk"; depends=[PerformanceAnalytics reticulate]; }; + Trading = derive2 { name="Trading"; version="2.1"; sha256="08vhcf3hl3b8pczaawf25vl6j2ap8zbmwdxxdi2g05hq05lywwf9"; depends=[PerformanceAnalytics reticulate]; }; TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.0"; sha256="1lnh9lbjxaradivnd1dkd2szggjh2r4v7klpyxb862dxsmdxxrqw"; depends=[caret data_table dplyr lubridate neuralnet RCurl zoo]; }; - Traitspace = derive2 { name="Traitspace"; version="1.1"; sha256="1wlrpnzb39vgkqy0ynbwlgrkkqgklrk6pw7f8p7p2i132qk2c291"; depends=[mclust permute]; }; TrajDataMining = derive2 { name="TrajDataMining"; version="0.1.6"; sha256="1n5qcyc1kb8rdrqaji7pp63l2gyr6jim8spm8ydb4lnqfcnrin9g"; depends=[geosphere rgdal RPostgreSQL sp spacetime trajectories xts]; }; TransModel = derive2 { name="TransModel"; version="2.1"; sha256="0brlr4w5k8xsgbrizm7ha0cmq0kqzd2fcjpszq7gym844jj93csi"; depends=[MASS survival]; }; TransP = derive2 { name="TransP"; version="0.1"; sha256="0p6pfcp8qjdah0lfhx0a396nxjzp3ckpda9hl3snpppx79iyww55"; depends=[]; }; + TransPhylo = derive2 { name="TransPhylo"; version="1.4.4"; sha256="1506c97y8dnhd0c38rgvmg70q0l3xmmn07mjglhnw7hi5n5y9mv9"; depends=[ape Rcpp]; }; TreatmentSelection = derive2 { name="TreatmentSelection"; version="2.1.1"; sha256="1pw64hx697jg2f1r2zd8y98g3ivj2gm8fnixcjfn4drsd0xixb4p"; depends=[binom ggplot2 survival]; }; - TreeBUGS = derive2 { name="TreeBUGS"; version="1.4.4"; sha256="0m6sny1xmb0sw7gg1jdds8q821g0pli5fx968c7y2smmmhxqv9rp"; depends=[coda hypergeo logspline MASS Rcpp RcppArmadillo rjags runjags]; }; + TreeBUGS = derive2 { name="TreeBUGS"; version="1.4.5"; sha256="1977p6lbb29w0cg5lpa5dyig7k3j6i2rd5jwr5bv6hwaq6yqsyrg"; depends=[coda hypergeo logspline MASS Rcpp RcppArmadillo rjags runjags]; }; TreeDep = derive2 { name="TreeDep"; version="0.1.3"; sha256="0ja2hp9sxzybac6dqdsns5q1rj12swl240znsnsffg9mkvzhq6rl"; depends=[ggplot2 lubridate]; }; - TreeLS = derive2 { name="TreeLS"; version="1.0"; sha256="0iqayrwwzd308karhs2pjy2sdp4xg6ncsnah7f68liia1znnld5y"; depends=[BH data_table lidR magrittr raster Rcpp RcppEigen rgl]; }; + TreeDist = derive2 { name="TreeDist"; version="1.1.1"; sha256="0b2kw32xg7qswbln69vrfkj8967ml8bm6glsl2n3hlv6ybrhhdvl"; depends=[ape colorspace memoise phangorn Rcpp TreeTools]; }; TreePar = derive2 { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape deSolve Matrix subplex TreeSim]; }; - TreeSearch = derive2 { name="TreeSearch"; version="0.4.0"; sha256="1mlvm0j2farxwyivjsx1994bh8l9qb4cx65096fi5zqzi5ybqigd"; depends=[ape phangorn R_cache Rdpack TreeTools]; }; + TreeSearch = derive2 { name="TreeSearch"; version="0.4.3"; sha256="0g5fdmadhpqq2cs5ss75008v6qrd77hppsqrbvbk46y2g83kn0bq"; depends=[ape phangorn R_cache Rdpack TreeTools]; }; TreeSim = derive2 { name="TreeSim"; version="2.4"; sha256="0nmzx2723n1f5lr951zz2ih2gnpfim5qzihlayhpf181z1qijv93"; depends=[ape geiger]; }; TreeSimGM = derive2 { name="TreeSimGM"; version="2.5"; sha256="125c9rim272h0dfyygmmijz8dcnch3g9wy1ngki77dyrmdl77yfx"; depends=[ape TreeSim]; }; - TreeTools = derive2 { name="TreeTools"; version="0.1.4"; sha256="103ymrgwq41f2h5v31brxg4cjrqk82wqx0hhasrcpf1vq37dc512"; depends=[ape colorspace phangorn R_cache Rcpp]; }; + TreeTools = derive2 { name="TreeTools"; version="1.2.0"; sha256="148amv8z4ih08w8yw7h2p1xwnmbf6pxapny5i1rd8zgi501x245w"; depends=[ape bit64 colorspace phangorn R_cache Rcpp]; }; TrendInTrend = derive2 { name="TrendInTrend"; version="1.1.3"; sha256="0ijkijyhxhjc7202qssa9wnrmwgv4miv5n8jbml4qqj80kcsbdwp"; depends=[nleqslv pracma pROC rms]; }; TrendSLR = derive2 { name="TrendSLR"; version="1.0"; sha256="1x8j2dg3m7b22gva33y4s318a41wl60sz93y868z4j65hp13jb5k"; depends=[changepoint forecast imputeTS plyr Rssa tseries zoo]; }; TriMatch = derive2 { name="TriMatch"; version="0.9.9"; sha256="17v8hdm594i9qs5hvrzb1k94wrzvx07479rmvbk4314fim27mabg"; depends=[ez ggplot2 gridExtra PSAgraphics psych randomForest reshape2 scales]; }; - TriadSim = derive2 { name="TriadSim"; version="0.1.1"; sha256="0m14k512b7q09zx51v2kxa8q9pk2i179w6ckl6jxj2acc860xw3k"; depends=[doParallel foreach snpStats]; }; - TrialSize = derive2 { name="TrialSize"; version="1.3"; sha256="1hikhw2l7d3c7cg4p7zzrgdwhy9g4rv06znpw5mc6kwinyakp75q"; depends=[]; }; + TriadSim = derive2 { name="TriadSim"; version="0.2.0"; sha256="12dpndq09blx1n57vpps646qmxzlz22987729brgxgdg69z0259s"; depends=[doParallel foreach snpStats]; }; + TrialSize = derive2 { name="TrialSize"; version="1.4"; sha256="0k162n3jr2ixdl3pp90izdr83z14hj70jb9mrfw3iqz0pczp2cpj"; depends=[]; }; TrioSGL = derive2 { name="TrioSGL"; version="1.1.0"; sha256="0xzyv1vppw0v1xjpf83nnv1sx1xy7197ay6l7dzvr0vllappdam9"; depends=[]; }; TripleR = derive2 { name="TripleR"; version="1.5.3"; sha256="13s1vlmr4sqa2sq2fbcld86bh3g73yb204aawbks11rjblwzvb0h"; depends=[ggplot2 plyr reshape2]; }; TropFishR = derive2 { name="TropFishR"; version="1.6.2"; sha256="1mmb573gf82rxsvrjal4iy5f5gjhjaws6kcabnhhp6cn5ainl64r"; depends=[doParallel GA GenSA Hmisc MASS msm propagate reshape2]; }; - TruncatedNormal = derive2 { name="TruncatedNormal"; version="2.1"; sha256="13aw1lvfq8mz91fqy65zs5aps231m9mq5v0r82c2ps72jaa7mcpw"; depends=[nleqslv randtoolbox Rcpp RcppArmadillo]; }; + TruncatedNormal = derive2 { name="TruncatedNormal"; version="2.2"; sha256="0zfq6y0d7ydj7mzwmnd6fvy4nk8pd7cs5n1xlysrz5378zjnkw0p"; depends=[alabama nleqslv randtoolbox Rcpp RcppArmadillo]; }; Tsphere = derive2 { name="Tsphere"; version="1.0"; sha256="0xgxw2hfj40k5s0b54dcmz7savl8wy4midmmgc7lq4pyb8vd58xx"; depends=[glasso rms]; }; TukeyC = derive2 { name="TukeyC"; version="1.3-3"; sha256="0bdnfr44hk4c1yh7i9ya95gwbwnplj3hf0k0pl1wm4ghiav39vcq"; depends=[doBy]; }; TunePareto = derive2 { name="TunePareto"; version="2.5"; sha256="0v1ylh4m5s80zp346pxxlvhm5070w83mlzfxjyp4n000c8r2nkf4"; depends=[]; }; TurtleGraphics = derive2 { name="TurtleGraphics"; version="1.0-8"; sha256="0h77pj7rs3lrqi1y2dm1cbrmj13mjpq6y5nw8bcq0s2kbnkfw67l"; depends=[]; }; Tushare = derive2 { name="Tushare"; version="0.1.3"; sha256="12aabkwlifc82yiym3yijpfpjhmhfwpw8mz4fb11qm6n4igr1yhg"; depends=[data_table forecast httr tidyverse]; }; + TwitterAutomatedTrading = derive2 { name="TwitterAutomatedTrading"; version="0.1.0"; sha256="1aa6fxxvy0s8al30w19wa2pwzp60zbbdvp5myigv8x26k6w2jwgv"; depends=[curl dplyr jsonlite lubridate magrittr naptime plyr purrr tibble tidytext twitteR]; }; TwoCop = derive2 { name="TwoCop"; version="1.0"; sha256="1ycxq8vbp68z82r2dfg2wkc9zk3bn33d94xay20g2p55lnzl2ifd"; depends=[]; }; TwoPhaseInd = derive2 { name="TwoPhaseInd"; version="1.1.1"; sha256="0xsqiq4x7vmhif9j8zi1smbchwm4fsbgb10i4vxi0biijybizk9z"; depends=[survival]; }; TwoRegression = derive2 { name="TwoRegression"; version="0.1.2"; sha256="0qr9zrfmbh4c4207gvwa384q5njjx6nsl6lc58d25m8bkfalifpi"; depends=[data_table dplyr magrittr seewave]; }; @@ -4702,9 +4815,10 @@ in with self; { UBCRM = derive2 { name="UBCRM"; version="1.0.1"; sha256="1h9f8wlxdgb67qqqnfhd9gfs4l2cq84vajhcb0psva0gwdd1yf6i"; depends=[]; }; UBL = derive2 { name="UBL"; version="0.0.6"; sha256="0238irg7r3g248h4x4bdb308wvfqq99hwykywf4k2bssdd25kwjk"; depends=[automap gstat MBA randomForest sp]; }; UCR_ColumnNames = derive2 { name="UCR.ColumnNames"; version="0.1.0"; sha256="1nwwq93f60r9aik51l7mzckg81f81nz5kgzynyzp5sm4y2wmpzwn"; depends=[]; }; - UCSCXenaShiny = derive2 { name="UCSCXenaShiny"; version="0.4.0"; sha256="1m67ahh2k0mc8215nnb32r8nf9niax7y5nn3qpwg1fcav7g9ns66"; depends=[dplyr DT ggplot2 ggpubr magrittr plotly RColorBrewer shiny shinyBS shinyjs shinythemes shinyWidgets tibble UCSCXenaTools zip]; }; - UCSCXenaTools = derive2 { name="UCSCXenaTools"; version="1.3.1"; sha256="1s4mkl9bf4lgqlfb5rjdk3fas9dsvqd5sgypw6jl2dbdf40krza8"; depends=[dplyr httr jsonlite magrittr readr rlang]; }; - UKgrid = derive2 { name="UKgrid"; version="0.1.2"; sha256="135lvzaw4gjnc40aw28706fhiz7p06l1jhw830iyg03w2v4j0ar0"; depends=[data_table dplyr lubridate magrittr tsibble xts zoo]; }; + UCSCXenaShiny = derive2 { name="UCSCXenaShiny"; version="0.5.0"; sha256="0rilgngbfh4ignlzm5l6z9mwjngwmhlj9dvaknf8rg9a4g67vgqz"; depends=[dplyr DT ggplot2 ggpubr magrittr plotly RColorBrewer shiny shinyBS shinyjs shinythemes shinyWidgets tibble UCSCXenaTools zip]; }; + UCSCXenaTools = derive2 { name="UCSCXenaTools"; version="1.3.3"; sha256="1jgs2rlgsd2mq69jkpkwszzwp0clvdh3zl90c7z4v04nz4b366cx"; depends=[dplyr httr jsonlite magrittr readr rlang]; }; + UComp = derive2 { name="UComp"; version="1.1"; sha256="19465rwpdy60f4ah9i77kax36sd2ff0xmjfd78qi6ziippzgxk88"; depends=[Rcpp RcppArmadillo]; }; + UKgrid = derive2 { name="UKgrid"; version="0.1.3"; sha256="1x44iry2j5qbvd8ac9rv9dmg60hbhry2v4jj9hmm49bx10iwl9h2"; depends=[data_table dplyr lubridate magrittr tsibble xts zoo]; }; UNCLES = derive2 { name="UNCLES"; version="2.0"; sha256="0c61sm09dh0yfrjrjjnizg7qrf8xgc1zdldwhjh64kq8k8g5wa69"; depends=[class kohonen pdist]; }; UNF = derive2 { name="UNF"; version="2.0.6"; sha256="0sr740dhfp7z9wvhajww43g5gz79x5y5dbflw5a813jgmiqm1jyq"; depends=[base64enc digest]; }; UNPaC = derive2 { name="UNPaC"; version="1.1.0"; sha256="12w6vjvkzivnqa6jd75dwr8h8d8xbc2519pqnqw9fk3yanqzx9rk"; depends=[huge PDSCE]; }; @@ -4723,20 +4837,21 @@ in with self; { Ultimixt = derive2 { name="Ultimixt"; version="2.1"; sha256="0fh2qpm7qpv1170jzbmzqhvwsn69lblizzisgasswy2nix2jjz4y"; depends=[coda gtools]; }; Umatrix = derive2 { name="Umatrix"; version="3.3"; sha256="188h959s5pawnny0fxlqmma03iww6af4x0y8p514bwh5xh9rj3kg"; depends=[abind AdaptGauss deldir fields geometry ggplot2 pdist plyr png pracma Rcpp reshape2 shiny shinyjs]; }; Umoments = derive2 { name="Umoments"; version="0.1.1"; sha256="089d0xmsp0419mxjp6fs0s1palvdkr0i5dzqckcn6r2kjqj7izjg"; depends=[]; }; - Umpire = derive2 { name="Umpire"; version="2.0.0"; sha256="0qdsy795r4vvf7lqwag4h2vcj6n23az15kj5vsclv343gl2xlvp9"; depends=[BimodalIndex mc2d]; }; + Umpire = derive2 { name="Umpire"; version="2.0.9"; sha256="1bqq8zrlfgcr741ydzmyy8rmkv05ijlfr0j2x0kgyxkg2j5r9kj4"; depends=[BimodalIndex mc2d]; }; UncDecomp = derive2 { name="UncDecomp"; version="1.0.1"; sha256="1m44pgk7nffay09m4gkwb0khq0qjd7bq1p72blsmib46wmnwqfsa"; depends=[dplyr ggplot2]; }; UncertainInterval = derive2 { name="UncertainInterval"; version="0.6.0"; sha256="0gyw1lgq1mni8m44lfi2vnd2wxq6i6ml6c6hy9amdbwmb7aymhhd"; depends=[car MASS nloptr psych reshape2 rootSolve zoo]; }; UniDOE = derive2 { name="UniDOE"; version="1.0.2"; sha256="14jz4acrvbv59sbr7gya8g0z749vv0i04gl5wl0y4218byjvw6bs"; depends=[Rcpp]; }; UniIsoRegression = derive2 { name="UniIsoRegression"; version="0.0-0"; sha256="0lmrmb9sbk41ak7sbcrzhfnijb1skgb4lqg9m9imc98lcp69h7z0"; depends=[Rcpp]; }; Unicode = derive2 { name="Unicode"; version="13.0.0-1"; sha256="12q98hdh46bbx17z6869bmn1j9bbhf524flvn76sqf20phk81xjy"; depends=[]; }; - UniprotR = derive2 { name="UniprotR"; version="1.2.4"; sha256="1zzxm93390nxw27fr62vhd8pafkq6fiy8if0cx4raznlym5615is"; depends=[alakazam data_tree dplyr ggplot2 ggpubr gridExtra httr magick magrittr plyr scales tidyverse]; }; + UnifiedDoseFinding = derive2 { name="UnifiedDoseFinding"; version="0.1.7"; sha256="1kapm7vwsn1a0prjplbd1im480dy6l02vsil82qxbhamvnc8his2"; depends=[]; }; + UniprotR = derive2 { name="UniprotR"; version="1.4.0"; sha256="0f2v347if81rnp1dvmfqz25qxsjmnmgvs27w3dg4bljydvl9s9n0"; depends=[alakazam curl data_tree dplyr ggplot2 ggpubr gridExtra httr magick magrittr plyr scales tidyverse]; }; UnitCircle = derive2 { name="UnitCircle"; version="0.1.3"; sha256="0z5ssps8l5ka4aw4984qml15scw4pfssara5dls82afhfhpkszsr"; depends=[]; }; UnivRNG = derive2 { name="UnivRNG"; version="1.2.2"; sha256="1hv0gg371ndljvn3x7s5vbkh51h1l1pjk57livw630mvb67cffqw"; depends=[]; }; UpSetR = derive2 { name="UpSetR"; version="1.4.0"; sha256="007i0njnjjy7vbrxabwav7a1kk2n0hn2mkvqsdzzfk10ckp5y7im"; depends=[ggplot2 gridExtra plyr scales]; }; UsingR = derive2 { name="UsingR"; version="2.0-6"; sha256="1lr8z45r5s7fxrd42rswm6w7s3k5nds244b9d525jb5v4n8w9kpw"; depends=[HistData Hmisc MASS]; }; UtilityFrailtyPH12 = derive2 { name="UtilityFrailtyPH12"; version="1.0"; sha256="06f5gmwwk1r14ab6v5jcxz0pmdph7ffi4y57mjg9byn7pjnibflk"; depends=[bindata mvtnorm Phase123 Rcpp RcppArmadillo]; }; - V8 = derive2 { name="V8"; version="3.0.2"; sha256="0cwhdk77fgmlaihh2mf0iclqz7fps7s7hvsw2s65m62w9gbwfhlk"; depends=[curl jsonlite Rcpp]; }; - VALERIE = derive2 { name="VALERIE"; version="1.0.0"; sha256="0rll02y0virzifn5xvsi52kn17j99vwmd23awkbqw50wvp5qkgss"; depends=[GenomicAlignments GenomicRanges ggplot2 ggplotify ggpubr IRanges pheatmap plyr Rsamtools scales]; }; + V8 = derive2 { name="V8"; version="3.2.0"; sha256="0z0dwa538lkggawiwrlplz698xznzlgv9fwhdslm7g7gdxyf0xgm"; depends=[curl jsonlite Rcpp]; }; + VALERIE = derive2 { name="VALERIE"; version="1.1.0"; sha256="15z8234jhh7hv3gijrvy8hap6gdgvm6qll9b00qbji7vyc3dg4pg"; depends=[GenomicAlignments GenomicRanges ggplot2 ggplotify ggpubr IRanges pheatmap plyr Rsamtools scales]; }; VAR_etp = derive2 { name="VAR.etp"; version="0.7"; sha256="0py5my3ilhcmz44m15hh0d219l9cz7rda4a9gbmf8wh9cgvvj1s3"; depends=[]; }; VARSEDIG = derive2 { name="VARSEDIG"; version="1.9"; sha256="18j73wm22bjvf2y0c09bfmdyx4x2gd0jhfcqhbk1sgsk24zjr63z"; depends=[]; }; VARshrink = derive2 { name="VARshrink"; version="0.3.1"; sha256="09hysmxxawcbyfx6bia546aqydryl2r5p3ai7bvl6ghdckw5mnpl"; depends=[ars corpcor MASS mvtnorm strucchange vars]; }; @@ -4744,26 +4859,26 @@ in with self; { VARtests = derive2 { name="VARtests"; version="2.0.5"; sha256="0gmm2qrrl4v5vx0nhiwq5brvanhybpb2q0zlf4dihramhjjbwyar"; depends=[Rcpp RcppArmadillo sn]; }; VBTree = derive2 { name="VBTree"; version="0.1.0"; sha256="0g0lyvclnfmd3zc8yhcibhli0hyxrba6wb3hx039fsg80q7y02h4"; depends=[tensorA]; }; VC2copula = derive2 { name="VC2copula"; version="0.1.0"; sha256="1nm42zwb5a5nx2gpm48ihxkiw10vlcvx7jp8x5kmf233bhqiaszf"; depends=[copula VineCopula]; }; - VCA = derive2 { name="VCA"; version="1.4.2"; sha256="16sm6580lm4rfnl2dr2g34cy545wxsbpvjc3pp73v47yhz3h1q59"; depends=[lme4 Matrix numDeriv]; }; + VCA = derive2 { name="VCA"; version="1.4.3"; sha256="0hqvqq8kvqgrli9426x9npy86nzgc3mhfgq45d8vm7ns3fc6zsay"; depends=[lme4 Matrix numDeriv]; }; VDAP = derive2 { name="VDAP"; version="2.0.0"; sha256="134x4aisaim72xkyzb1vb8vhl2m4i12yzh6cj858a1ag7b0ing3n"; depends=[drc ggplot2 reshape2 stringr]; }; VDJgermlines = derive2 { name="VDJgermlines"; version="0.1"; sha256="1aqjhkcj3bd5hk7iz0f2cy5nfp23gvhqsmg6nzlxd9klwc6xpq2h"; depends=[ape stringdist]; }; VDSPCalibration = derive2 { name="VDSPCalibration"; version="1.0"; sha256="1hrmmhvk3mhd3bdl0msnm5shcj4cjgd3pn1rkfkv8fh4llqvz7w8"; depends=[]; }; - VFP = derive2 { name="VFP"; version="1.2"; sha256="188lw1hfsjpimr9vfs078yq1a0c64nh0qnz6xncwxmi8qflln9zz"; depends=[gnm MASS VCA]; }; + VFP = derive2 { name="VFP"; version="1.3"; sha256="1mkwm1lpxyfarfhsg77ppm55gvsvynqfa8abdsxn5y8w99qb0kmk"; depends=[gnm MASS VCA]; }; VFS = derive2 { name="VFS"; version="1.0.2"; sha256="1b8sl8id2gj4iqkpjzd3giybbix2jvskwsbw1kqj3zqr77hygxwg"; depends=[e1071 nleqslv]; }; - VGAM = derive2 { name="VGAM"; version="1.1-2"; sha256="0kyan3a4ys2xbg9kf167cyf1gk7g963id62cjm2ij4i7y4wi61zq"; depends=[]; }; + VGAM = derive2 { name="VGAM"; version="1.1-3"; sha256="1hwlrdx3nhdp83pvy1h23i16vbbhi4kizdhr58c8nvg7kqdzb7qc"; depends=[]; }; VGAMdata = derive2 { name="VGAMdata"; version="1.0-3"; sha256="1jicadjaqmys1bbgkp64hmm8wwmi6f734il00v8qjz3jl9b02pkn"; depends=[]; }; - VGAMextra = derive2 { name="VGAMextra"; version="0.0-1"; sha256="0rlj4q6ry6v3fnpmg4s33ynn7qzs5m98csap55nyn6r9ynrh5gk5"; depends=[VGAM]; }; + VGAMextra = derive2 { name="VGAMextra"; version="0.0-2"; sha256="18k06k32ajf77z9g53vnbzr8pcb41r89bdv05sbcc9r2833bqa9g"; depends=[VGAM]; }; VHDClassification = derive2 { name="VHDClassification"; version="0.3"; sha256="1ij4h3gzxb9mm9q743kc3sg2q609mnqz6mhlrbim1wcjji2b7bv4"; depends=[e1071 lattice]; }; VIF = derive2 { name="VIF"; version="1.0"; sha256="0yvg6ikrcs7mhg0pavhcywrfysv7ylvnhxpc5sam86dbp69flx9x"; depends=[]; }; VIFCP = derive2 { name="VIFCP"; version="1.2"; sha256="0w41k25vss806m5vpwmmcfsmwaixmln0pliql3a6xlwsihha5i34"; depends=[]; }; VIGoR = derive2 { name="VIGoR"; version="1.0"; sha256="1c24s917aafqy46b3xlsw8v3afs11nd5bq83vlygpgnz1612jpga"; depends=[]; }; - VIM = derive2 { name="VIM"; version="5.1.1"; sha256="0w22ir0gvym7gqd6nw2j7w5ivlb3az1dkfxv33imimkb7c83056a"; depends=[car colorspace data_table e1071 laeken magrittr MASS nnet ranger Rcpp robustbase sp vcd]; }; + VIM = derive2 { name="VIM"; version="6.0.0"; sha256="0ddhca4v912q82rjpf1qld6i6g2c381g0v5b4hbnygr3lm6a7wiv"; depends=[car colorspace data_table e1071 laeken magrittr MASS nnet ranger Rcpp robustbase sp vcd]; }; VIRF = derive2 { name="VIRF"; version="0.1.0"; sha256="0bdkmbmkmmj78h9x025qsdzjzcx8xr2s98wlspcsghlz4hxkzcas"; depends=[BigVAR expm gnm ks matlib matrixcalc mgarchBEKK rmgarch]; }; VLF = derive2 { name="VLF"; version="1.0"; sha256="1il8zhm80mc22zj16dpsy4s6s9arj21l9ik0vccyrpnlr8ws3d3l"; depends=[]; }; VLMC = derive2 { name="VLMC"; version="1.4-3-1"; sha256="0cwfpxcj8g68j9z9fl66i0amj8ypf199iv3yyxzsmniqv4w5x4ar"; depends=[MASS]; }; - VLTimeCausality = derive2 { name="VLTimeCausality"; version="0.1.0"; sha256="1fsdxpd9vxnx7919a601g6qf2db8f1p7ch5bfrwc0x89y6abzavv"; depends=[dtw ggplot2 RTransferEntropy tseries]; }; + VLTimeCausality = derive2 { name="VLTimeCausality"; version="0.1.1"; sha256="0l03zxd2s99g8parjka2w5dwmsjp0k6wwag3axhj4qd7x7z0rfyh"; depends=[dtw ggplot2 RTransferEntropy tseries]; }; VNM = derive2 { name="VNM"; version="7.1"; sha256="19qglcibb7r6jjz0n0piklwfv3hi4jphd6vmyfbm0ccjjkmn5nin"; depends=[Rcpp]; }; - VOSONDash = derive2 { name="VOSONDash"; version="0.5.1"; sha256="1mg38fh7rrf1b2madk7lqqg0rmkh73hl20f920b4pdggqnrpmqq6"; depends=[httpuv httr igraph lattice magrittr RColorBrewer rtweet shiny syuzhet tm vosonSML wordcloud]; }; + VOSONDash = derive2 { name="VOSONDash"; version="0.5.7"; sha256="1qivx5ddl9jsn6q6ic2w8jrczxlx23z087k5arfz2rixgj7rndyg"; depends=[data_table httpuv httr igraph lattice magrittr RColorBrewer shiny SnowballC systemfonts syuzhet textutils tm vosonSML wordcloud]; }; VSE = derive2 { name="VSE"; version="0.99"; sha256="07m5080nw72b77238v2wwdh4dxsvv6y78d4j1329n90wyj2crxl4"; depends=[car GenomicRanges igraph IRanges]; }; VSURF = derive2 { name="VSURF"; version="1.1.0"; sha256="1azfd4sb89mp27l86k293qj81x94gfiy1ihwnb6c558p8h69xsgf"; depends=[doParallel foreach randomForest ranger Rborist rpart]; }; VTShiny = derive2 { name="VTShiny"; version="0.1.0"; sha256="1zq6irla3q7hqs8jpjdya7vy3frqrj72rwmd1sgxwrkgpmpxw6x7"; depends=[EnvStats rmarkdown shiny]; }; @@ -4795,70 +4910,73 @@ in with self; { Voss = derive2 { name="Voss"; version="0.1-4"; sha256="056izh1j26vqjhjh01fr7nwiz1l6vwr5z4fll87w99nc5wc4a467"; depends=[fields]; }; W2CWM2C = derive2 { name="W2CWM2C"; version="2.0"; sha256="139rbbhshiap3iq4s4n84sip3cwwjn2x7lm7kmzwj5glhl5dc6ga"; depends=[colorspace wavemulcor waveslim]; }; W3CMarkupValidator = derive2 { name="W3CMarkupValidator"; version="0.1-6"; sha256="0nfay5nqss3zlw4nikj8h3zzlnjfxjch4pm3qky15qrcigrybrbl"; depends=[curl xml2]; }; + WACS = derive2 { name="WACS"; version="1.1.0"; sha256="09fmdlpb99q9dw17lwp0bwpklgvgiqq7bfs9ryx5r54m0niklr9d"; depends=[mclust mnormt mvtnorm tmvtnorm]; }; WARN = derive2 { name="WARN"; version="1.2-4"; sha256="18gfk9vqcqarj7j5i240wqv2dclg3csng4mih5izj40xaaxaf6q5"; depends=[MASS]; }; WCE = derive2 { name="WCE"; version="1.0.2"; sha256="105pwpd9ikm0gwz4r12jl6cgs1riwsk9pn5qk9cn3msgwa0sdynx"; depends=[plyr survival]; }; WCM = derive2 { name="WCM"; version="0.2.2"; sha256="0w1m2vcxc64ksw3dm94wdigil2fpv3cvzyqmkhs2zrfjlgrdchcd"; depends=[pracma raster]; }; WCQ = derive2 { name="WCQ"; version="0.2"; sha256="1yhkr2iazd7lh9r68xz1lh32z6r1sdnmqrjshcrm4rbwai0j3lkr"; depends=[]; }; - WDI = derive2 { name="WDI"; version="2.6.0"; sha256="00y8i69yfnflv0xyfpxl0628p5iivr38cjih7w11sfprdgbzawcx"; depends=[RJSONIO]; }; + WDI = derive2 { name="WDI"; version="2.7.1"; sha256="0yjb3hsq0w6yasw247ygzfhf0293jmmii1i35xi7g0ccz8fs2ax6"; depends=[RJSONIO]; }; WEE = derive2 { name="WEE"; version="1.0"; sha256="0i3h67p72lr708mwdw3rbzr1lqqr8n2dxv7f0bwyqzxv41sx1iz3"; depends=[doParallel foreach quantreg]; }; + WEGE = derive2 { name="WEGE"; version="0.1.0"; sha256="17g4cgx0ajgj7lgxzi467cjbmbc47skyarcm88vqjc3i1j55dw12"; depends=[raster sf sp]; }; WGCNA = derive2 { name="WGCNA"; version="1.69"; sha256="022hkprnrafvggi8pkjffkvk1qlnibmbbxxrni00wkrdbga5589f"; depends=[AnnotationDbi doParallel dynamicTreeCut fastcluster foreach GO_db Hmisc impute matrixStats preprocessCore Rcpp survival]; }; WGScan = derive2 { name="WGScan"; version="0.1"; sha256="0jma6di9hbdimswdfm58568vahcjy46hbhb78idjsdz4bl9apvq3"; depends=[data_table MASS Matrix seqminer SKAT]; }; + WLasso = derive2 { name="WLasso"; version="1.0"; sha256="0q44ljdsqsnnwfnnsmyn3p65inbw0y71v7v5pp7cz2dzbhhpfzpw"; depends=[genlasso ggplot2 MASS Matrix tibble]; }; WLreg = derive2 { name="WLreg"; version="1.0.0"; sha256="0paghjcshhrr6y1gm98d6gr78zvgzhl678g9f96hppfa4q3lfpr7"; depends=[inline survival]; }; - WMCapacity = derive2 { name="WMCapacity"; version="0.9.6.7"; sha256="167wx759xi7rv74n6sdsdkjnfpxdsiybk4ik70psdgfwdqqcga1y"; depends=[cairoDevice coda gtools gWidgets gWidgetsRGtk2 RGtk2 XML]; }; WMDB = derive2 { name="WMDB"; version="1.0"; sha256="10wdjy3g2qg975yf1dhy09w9b8rs3w6iszhbzqx9igfqvi8isrr1"; depends=[]; }; WMWssp = derive2 { name="WMWssp"; version="0.4.0"; sha256="16m4hvjqdcpkvswvqwgm0pq9nm7vjrlqldzi4i69izlwccp37v47"; depends=[]; }; WPC = derive2 { name="WPC"; version="1.0"; sha256="0li502hwa4n945yfnilslyvl12ls66kazbfmxb4kkjbaf500mjp9"; depends=[msm survival]; }; WPKDE = derive2 { name="WPKDE"; version="0.1"; sha256="100vla11fbw16x5n4w4kbslz4n725v4x6j0hrxzrk99ryl0crmf6"; depends=[]; }; WR = derive2 { name="WR"; version="0.1.1"; sha256="153f64b2zsykl5f8iwxlcqby96ag1an4w8lhs7dxx72gy5k4vs6c"; depends=[survival]; }; - WRS2 = derive2 { name="WRS2"; version="1.0-0"; sha256="1ax7lchbg0f5miq5779p1zmk6pw36hvwwmbpvsfqwahl5wlvii0s"; depends=[MASS mc2d plyr reshape]; }; + WRS2 = derive2 { name="WRS2"; version="1.1-0"; sha256="1nkqs5nvsk5n7zj3rh19shaf55q9q0kd8v0686vhyv286g71ism7"; depends=[MASS mc2d plyr reshape]; }; WRSS = derive2 { name="WRSS"; version="3.0"; sha256="16a7i6glgl5cshsn3w7gxviybmka06ylw5znz94gigyx0vhgv97p"; depends=[GGally ggplot2 Hmisc network nloptr]; }; WRTDStidal = derive2 { name="WRTDStidal"; version="1.1.2"; sha256="1ssrqqf2hypif4nnfyl4lq03glyyg9ry9s14llf1njxamhjggfgg"; depends=[caret dplyr fields foreach forecast ggplot2 gridExtra lubridate purrr quantreg RColorBrewer survival tidyr]; }; - WVPlots = derive2 { name="WVPlots"; version="1.2.4"; sha256="1mjfk4dijfgaibhrlnxq1iv6q9c2r8zb5ky6f7v840jhwx2k2pnz"; depends=[cdata ggplot2 gridExtra mgcv rqdatatable rquery sigr wrapr]; }; + WVPlots = derive2 { name="WVPlots"; version="1.2.6"; sha256="0d27cbmf31pr2gb84c4hjrw6m19bbj2fbb320nf2v90x5af9rm2z"; depends=[cdata ggplot2 gridExtra mgcv rqdatatable rquery sigr wrapr]; }; WWGbook = derive2 { name="WWGbook"; version="1.0.1"; sha256="0q8lnd1fp4rmz715x0lf61py3xw8wg55yq3gvswaqwy68dlqrzjc"; depends=[]; }; WWR = derive2 { name="WWR"; version="1.2.2"; sha256="0ia1dd12r1l08s9nhgvk55jmqwv58jawm25gd2ni6wpa3mcmq02g"; depends=[inline]; }; WaMaSim = derive2 { name="WaMaSim"; version="1.0.0"; sha256="0sa7qd2bpn3sp06mlpissxxkfhg7j1d07nnwlnz7nyg7pivwnpan"; depends=[magrittr]; }; - WaterML = derive2 { name="WaterML"; version="1.9.0"; sha256="1wp7ps6xypxar89lbndk56sc3px62xz098jlnr9hq124mqac01qb"; depends=[httr XML]; }; + WaterML = derive2 { name="WaterML"; version="1.9.5"; sha256="0vc4wf9bw3r504w6k9jx0x0s6fz9yjyryjgi7qhgvha02cqn2k03"; depends=[httr XML]; }; Watersheds = derive2 { name="Watersheds"; version="1.1"; sha256="1gn52nl0rr29pqq94gjasc4fi1kjxlrpjdkgm2x56j5jbd162drk"; depends=[lattice maptools rgeos sp splancs]; }; - WaveLetLongMemory = derive2 { name="WaveLetLongMemory"; version="0.1.2"; sha256="1p9ld6w2qgbvkvp7xkzzd14v89rxcwl6vlr1zgxkpc5awl1ln1a8"; depends=[fracdiff wmtsa]; }; WaveSampling = derive2 { name="WaveSampling"; version="0.1.1"; sha256="081pqxbrz8vsmjgammh0802frl8lqrw9z1svhdqjc65lqkwghh75"; depends=[Matrix Rcpp RcppArmadillo]; }; WaveletANN = derive2 { name="WaveletANN"; version="0.1.0"; sha256="08qnx0lk2laiyx1q1wxj15j0yic65r7mbhr6lqbdllq30v4dcj88"; depends=[forecast fracdiff wavelets]; }; WaveletArima = derive2 { name="WaveletArima"; version="0.1.1"; sha256="19hz2q280m41qh3m9lx3i9p6p5fl6pw8r9b06xk6sn04hxbim8xx"; depends=[forecast fracdiff wavelets]; }; WaveletComp = derive2 { name="WaveletComp"; version="1.1"; sha256="07w2aa0jiflvxyqhgh48705hg8hjspd103jd00i2pcw2v42hwmf8"; depends=[]; }; WaveletGARCH = derive2 { name="WaveletGARCH"; version="0.1.1"; sha256="0dj5bmvzfhj1cpn8qi2ax3iipr7jlq0f9vk4b1idqgh5dmdi8lh6"; depends=[FinTS forecast fracdiff rugarch wavelets]; }; WaverR = derive2 { name="WaverR"; version="1.0"; sha256="084fhzggzm075w6wp2lqd3j0an21idhw8z5l8ynz4y96mpmn204a"; depends=[kimisc MASS]; }; - WeMix = derive2 { name="WeMix"; version="3.1.3"; sha256="0407ph8cbci4qwgk525r0y88iz45faq52ljlqa46q9076r9j7sng"; depends=[lme4 Matrix minqa NPflow numDeriv Rmpfr statmod]; }; - WebGestaltR = derive2 { name="WebGestaltR"; version="0.4.3"; sha256="0l068mikd8ys7w2643kzmzy2qnj0khz3k780n1lm78ikzbk43sr0"; depends=[apcluster doParallel doRNG dplyr foreach httr igraph jsonlite Rcpp readr rlang svglite whisker]; }; + WeMix = derive2 { name="WeMix"; version="3.1.4"; sha256="0ms4qf6lxf2zn7m3qxlxi0sz1rr9mkx998hxj7si2w0k41rdck8v"; depends=[lme4 Matrix minqa NPflow numDeriv Rmpfr statmod]; }; + WebGestaltR = derive2 { name="WebGestaltR"; version="0.4.4"; sha256="1rgf9s80hk35baiknrwgnqnhxssrcxdansgpvpyhqv07bqd472nn"; depends=[apcluster doParallel doRNG dplyr foreach httr igraph jsonlite Rcpp readr rlang svglite whisker]; }; WebPower = derive2 { name="WebPower"; version="0.5.2"; sha256="11255q41zai4q6n2mpk3fzhi2lyyr3g8dxqfajkb93f68m1b38jp"; depends=[lavaan lme4 MASS PearsonDS]; }; WeibullFit = derive2 { name="WeibullFit"; version="0.1.0"; sha256="1a80gcqbmvb1rz2dr2syy16wn6ixjn6l40gayys9zy8302hky9ir"; depends=[e1071 FAdist glue kSamples mixdist optimx R_methodsS3 R_oo sqldf xtable]; }; WeibullR = derive2 { name="WeibullR"; version="1.0.12"; sha256="0rj4q9hd49b914lz8q1d8n96xrl0h29avn95aigb3z7f8knf7g9g"; depends=[Rcpp RcppArmadillo]; }; - WeightIt = derive2 { name="WeightIt"; version="0.9.0"; sha256="0p16q0zc7xdxwsvdf15h97zj7cdhr1rmzawljsjn4yzqwqby7nsy"; depends=[backports crayon ggplot2]; }; - WeightSVM = derive2 { name="WeightSVM"; version="1.7-4"; sha256="11j47c16q9qcxpbwi66018qvj7mmw4l9xkl47kyggmyz87kbrk73"; depends=[]; }; + WeightIt = derive2 { name="WeightIt"; version="0.10.1"; sha256="0fhnnq7r70mrnbr3l1nrvjz8zg4ssrww21gzpzymg313406q46a5"; depends=[backports cobalt crayon ggplot2]; }; + WeightSVM = derive2 { name="WeightSVM"; version="1.7-5"; sha256="02l2iz4p09dmaybp75a4z2lzq3h4dr03xpnr33m7r280lkimz2fx"; depends=[]; }; Weighted_Desc_Stat = derive2 { name="Weighted.Desc.Stat"; version="1.0"; sha256="030i12mnwlj976avvk3grrccgprsckmc35dm2ajwdfc9dijhypnj"; depends=[]; }; - WeightedCluster = derive2 { name="WeightedCluster"; version="1.4"; sha256="05rmqhgfzh9fs4c1lhmrbk8s46ihaywy7n9qnivf7zcxxzxds0lj"; depends=[cluster RColorBrewer TraMineR]; }; + WeightedCluster = derive2 { name="WeightedCluster"; version="1.4-1"; sha256="0d239lfigb51ly79aq48xfihmxf07i6qgc64sq94xc29ffjafpkc"; depends=[cluster RColorBrewer TraMineR]; }; WeightedPortTest = derive2 { name="WeightedPortTest"; version="1.0"; sha256="007v3w9ssiv2sds7sikpal27g6pxwxhs7bvcyw6kr0vg8gvlbi8h"; depends=[]; }; WeightedROC = derive2 { name="WeightedROC"; version="2020.1.31"; sha256="1f43hwsabciraj1qxfh5wcqnnx1vvcf4pwqs376rcfd9161k15xv"; depends=[]; }; WgtEff = derive2 { name="WgtEff"; version="0.1.2"; sha256="1z8pndv43ssgmzldwaq0088lmf1g2mkmrbmzyaismcpngn9fqxsk"; depends=[]; }; WhiteStripe = derive2 { name="WhiteStripe"; version="2.3.2"; sha256="0kzwglaazn820fzxd2g1fsiw2rnq0qxagns8b5mm3inflsgs35ng"; depends=[mgcv oro_nifti]; }; WiSEBoot = derive2 { name="WiSEBoot"; version="1.4.0"; sha256="1fch78884ay7m2gy602k8df78gkvjiwzkjk550w0k4xbv430ld0h"; depends=[FAdist wavethresh]; }; - WikidataQueryServiceR = derive2 { name="WikidataQueryServiceR"; version="0.1.1"; sha256="1bqgp3wldfmnwwh9llig8xpa4x0rcp1hcwyw7d7pw4ym61b2v65x"; depends=[dplyr httr jsonlite]; }; + WikidataQueryServiceR = derive2 { name="WikidataQueryServiceR"; version="1.0.0"; sha256="1bl1nbhbmss8cj9ni7plsjs996n4rwqv6h8bh1zj4whs8z4fw50f"; depends=[dplyr httr jsonlite purrr ratelimitr readr rex WikipediR]; }; WikidataR = derive2 { name="WikidataR"; version="1.4.0"; sha256="0ajbizsyk5a7fgbfn26qydxpp5d8qfnlcwbslxrrn913f0yxbcb4"; depends=[httr jsonlite WikipediR]; }; WikipediR = derive2 { name="WikipediR"; version="1.5.0"; sha256="1w4ggq42vlq7zbrz3v9ripz9yscbd8m8as60q7cplpxn9zqfdl7q"; depends=[httr jsonlite]; }; WikipediaR = derive2 { name="WikipediaR"; version="1.1"; sha256="0fxk247jb82g0f3nmwraa4kvdpjxy5s4dcyzj9vkjw2lq8by3l0h"; depends=[httr XML]; }; WilcoxCV = derive2 { name="WilcoxCV"; version="1.0-2"; sha256="1kbb7ikgnlxybmvqrbn4cd8xnqrkwipk4xd6yja1xsi39a109xzl"; depends=[]; }; WindCurves = derive2 { name="WindCurves"; version="0.1.3"; sha256="0bvbnrkdk0g0radgcw4zbhq6czpvq3f7f34x83qk09i8ngmwd28c"; depends=[drc imputeTestbench readbitmap]; }; + WoodburyMatrix = derive2 { name="WoodburyMatrix"; version="0.0.1"; sha256="1yg61j8dw0yfz6lhz68vr5ndr7z0w3zgdw8hbbnxwfcpw759n8p1"; depends=[Matrix]; }; WordOfMouth = derive2 { name="WordOfMouth"; version="1.0.0"; sha256="1ir928rv0xk27arca8bzsdxjvmrkd0azy4ijwnaziqrrm5dpiasj"; depends=[LambertW]; }; WordPools = derive2 { name="WordPools"; version="1.1-1"; sha256="081qnsq7wn1vczgf6ipz8wjmyg4vwhj1s5nrzh0dw4p9yz28dxv2"; depends=[]; }; WordR = derive2 { name="WordR"; version="0.3.1"; sha256="17g8v3xhdy57y0b95zrakhi0zamqi35v0zcmjpy47xyqyk4b2grs"; depends=[dplyr flextable officer]; }; - WorldFlora = derive2 { name="WorldFlora"; version="1.5"; sha256="0q7kp0jgn4kb31i5wpvh3f8wfsajg17g7b883av1x097a0jndnjm"; depends=[]; }; + WorldFlora = derive2 { name="WorldFlora"; version="1.6"; sha256="1sm4v5kqvvy0rpwcygwgxlppz2pbv9a33kkwqgx3s75lgd3j1808"; depends=[]; }; Wrapped = derive2 { name="Wrapped"; version="2.0"; sha256="1z5kypsd39z9arsw57axckvl8b4jnr5wv60s9z58f5s89gn5vxxg"; depends=[AdequacyModel ald cubfits evd fBasics gamlss_dist GeneralizedHyperbolic GEVStableGarch glogis irtProb LCA lqmm metRology NormalLaplace normalp ordinal sgt SkewHyperbolic sld sn VarianceGamma VGAM]; }; - WrightMap = derive2 { name="WrightMap"; version="1.2.2"; sha256="0w1iwl45kv6vq5fg88hlkv93bpbrw8jm1wnhk9qxznlm0g13z33x"; depends=[]; }; + WrightMap = derive2 { name="WrightMap"; version="1.2.3"; sha256="0i84xkd1agyp45r84zsk8vvc02ln8qhxvl4n72xjqib12b38kqzl"; depends=[]; }; WriteXLS = derive2 { name="WriteXLS"; version="5.0.0"; sha256="1gypq7zh22kpraz0bgj4jyvy2hbj1l8r7m6y34531vjdgwf67sss"; depends=[]; }; WufooR = derive2 { name="WufooR"; version="1.0.1"; sha256="0iq1lc1b22zdvclkr4yivxxf8z5mdxik7lx9r3b38h2qy2rckqb2"; depends=[dplyr httr jsonlite]; }; XBRL = derive2 { name="XBRL"; version="0.99.18"; sha256="1bwvxqbxdf1ynz2bv27l86h05h8y19q2li2y79xk819p5nkxq341"; depends=[Rcpp]; }; XHWE = derive2 { name="XHWE"; version="1.0"; sha256="1ca8y9q3623d0vn91g62nrqf3pkbcbkpclmddw5byd37sdrgsi5l"; depends=[]; }; + XICOR = derive2 { name="XICOR"; version="0.3.3"; sha256="0xhb58bk3r8spd8ah3r7568np27nlrc18cswcsgavaikjpfda9vr"; depends=[psychTools]; }; XKCDdata = derive2 { name="XKCDdata"; version="0.1.0"; sha256="1lx9frlbc549qrh4d3m79r3l9icfzqkgfgp8raa8x46a2havi0a5"; depends=[assertthat dplyr glue htmltools httr jsonlite magrittr tibble]; }; XLConnect = derive2 { name="XLConnect"; version="1.0.1"; sha256="0fbfkl26v42bvbz27kjw8cqnq67mwalxqpp5avqjphc17i5a6ylj"; depends=[rJava]; }; - XML = derive2 { name="XML"; version="3.99-0.3"; sha256="0lzpqwajs5xaqdna50vl24qkp9xvh00zypjjzy6kgdzk11isgdw1"; depends=[]; }; + XML = derive2 { name="XML"; version="3.99-0.5"; sha256="19jkpnbjx2ij0h7rxi13sqnjnwsap6wywmd4gnhfnqpic1rrnlk0"; depends=[]; }; XML2R = derive2 { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[plyr RCurl XML]; }; XMRF = derive2 { name="XMRF"; version="1.0"; sha256="0jnyy9pcksfadznidqsbwh8nlqv3k0yppj76q8a2g0aidbdmg2cc"; depends=[glmnet igraph MASS Matrix snowfall]; }; XNomial = derive2 { name="XNomial"; version="1.0.4"; sha256="1mwx302576rmsjllbq2clfxilm3hkyp5bw0wmwqbn0kgv5wpy8z6"; depends=[]; }; @@ -4868,7 +4986,8 @@ in with self; { XRSCC = derive2 { name="XRSCC"; version="0.1"; sha256="0hs2whjsd02avaz79zkrd8gjw9qd7l6ysxmhx4w1r7gb1cj9rr7c"; depends=[]; }; XiMpLe = derive2 { name="XiMpLe"; version="0.10-2"; sha256="16dmslc3ji9zbbm2khw8ib8rhwan0mdlfyd4h29v42lcx6l1d0pv"; depends=[]; }; Xmisc = derive2 { name="Xmisc"; version="0.2.1"; sha256="11gwlcyxhz1p50m68cnqrxmisdk99v8vrsbvyr7k67f0kvsznzs1"; depends=[]; }; - Xplortext = derive2 { name="Xplortext"; version="1.3.1"; sha256="03mw84bmwrzl1g5z0dlmfphlslhcgy09lrjw8l13ahfj0a51cvn1"; depends=[FactoMineR flashClust flexclust ggdendro ggplot2 gridExtra MASS slam stringi stringr tm]; }; + Xplortext = derive2 { name="Xplortext"; version="1.3.2"; sha256="0vs4nagc7bsjx1m5cww5m2bkv0ay1phdz47070vx5pi6hiwhgaak"; depends=[FactoMineR flashClust flexclust ggdendro ggplot2 gridExtra MASS slam stringi stringr tm]; }; + YPBP = derive2 { name="YPBP"; version="0.0.1"; sha256="1slc7glr4hb0my5zkssprngb6si98npjj33nsbsm0nbm61hnb9n8"; depends=[BH Formula MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; YPInterimTesting = derive2 { name="YPInterimTesting"; version="1.0.3"; sha256="0fca963rsbs9k7ivffsqk4hzap6ll7s709kqs6aby0plghrdla2w"; depends=[MASS Rcpp]; }; YPPE = derive2 { name="YPPE"; version="1.0.1"; sha256="01q0l22nwfpld2wcygk5x28c2c6cv35hxy2fm1azn8bqsv7xy5il"; depends=[BH Formula MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; YRmisc = derive2 { name="YRmisc"; version="0.1.6"; sha256="1crms7dqmhj7br1a5p5j0j7p6sdfimnip31207i6g24f9jkkysv1"; depends=[ggplot2 gridExtra]; }; @@ -4883,7 +5002,7 @@ in with self; { ZIPFA = derive2 { name="ZIPFA"; version="0.8.1"; sha256="134pkdn4slhiv27rdkkmh2z7xch30ns0jhzxgd7r05bky0z1iri1"; depends=[doParallel foreach Matrix optimx trustOptim]; }; ZOIP = derive2 { name="ZOIP"; version="0.1"; sha256="0fraxzr2mfd7w705j2fryhh9vpg6nkag6kmk7p7in3zknxwipfh3"; depends=[boot GHQp numDeriv rmutil]; }; ZRA = derive2 { name="ZRA"; version="0.2"; sha256="1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"; depends=[dygraphs forecast]; }; - ZVCV = derive2 { name="ZVCV"; version="1.0.0"; sha256="1npw836q2skx54843lgxvb0rfwafckjc8k8dljykm60ad3z7zak8"; depends=[abind glmnet mvtnorm partitions Rcpp RcppArmadillo]; }; + ZVCV = derive2 { name="ZVCV"; version="2.1.0"; sha256="0np6h6x74kz1x13wmbkkm1wq43d8bnn2khzjc80prqdi6n0m9v8r"; depends=[abind BH dplyr glmnet magrittr mvtnorm Rcpp RcppArmadillo Rlinsolve]; }; ZeBook = derive2 { name="ZeBook"; version="1.1"; sha256="0v98kbz9njjdx60x9dn8hl8mc6x19i5knjyg2gkwfd667yy1rkl6"; depends=[deSolve triangle]; }; ZillowR = derive2 { name="ZillowR"; version="0.1.0"; sha256="1wrr58p76ps29fqzzwgfvfibxrvc72p2yzs5kc2rv1yxzzcpyxvb"; depends=[RCurl XML]; }; ZipRadius = derive2 { name="ZipRadius"; version="1.0.1"; sha256="00q4a2bsajs5ns4vdm289iaj9mczxjn3ssyrnmg2z4wicr2ljizv"; depends=[dplyr geosphere ggplot2 magrittr rlang testthat]; }; @@ -4892,11 +5011,11 @@ in with self; { aGE = derive2 { name="aGE"; version="0.0.9"; sha256="17niwni6sd2mdvhskq6vfwplynh67hwq9ijrlgjvhkcslpb2ilp3"; depends=[MASS nlme survey]; }; aLFQ = derive2 { name="aLFQ"; version="1.3.6"; sha256="0kphpvhz36859f5l0k8mbf59g9871mynbs4ybdi0h5nm2cdjy9vx"; depends=[bio3d caret data_table lattice plyr randomForest reshape2 ROCR seqinr]; }; aMNLFA = derive2 { name="aMNLFA"; version="0.1"; sha256="0sj6rxsdib5zmz78c94bjdlcdwhfkvbc7sp3pncj6vsvvzgqcjdp"; depends=[devtools ggplot2 gridExtra MplusAutomation plyr reshape2 stringr]; }; - aPCoA = derive2 { name="aPCoA"; version="1.0"; sha256="0vgwja5309nml34ann46as5qjw7z9qwqapcvnr8b5n38zdw4dz4y"; depends=[ape car cluster mvabund randomcoloR vegan]; }; + aPCoA = derive2 { name="aPCoA"; version="1.2"; sha256="0b5fqxay918if5pfd6xgbzir5myivc3jar2p2is8azrykrr1v2cr"; depends=[ape car cluster randomcoloR vegan]; }; aRpsDCA = derive2 { name="aRpsDCA"; version="1.1.1"; sha256="0ghg43rd6bnv4jp8pkpd1ixp5l6kq5pr0mxq61q24s24g0m3s64p"; depends=[]; }; aRxiv = derive2 { name="aRxiv"; version="0.5.19"; sha256="0rik0jkh1xi9fizzw46xmcw139g6nla072p7f8jgvzbhp7k58ba2"; depends=[httr XML]; }; aSPC = derive2 { name="aSPC"; version="0.1.2"; sha256="1q301rw7dax5v58srg4jlcam1qq2igkaj7kg8wlnlml0hsck4c4a"; depends=[energy mvtnorm]; }; - aSPU = derive2 { name="aSPU"; version="1.48"; sha256="0kjvwwvyhiz9i5kxqg68lq6cvxnk9vzvp5zca5hfv2g77j42wh9h"; depends=[fields gee MASS matrixStats mvtnorm]; }; + aSPU = derive2 { name="aSPU"; version="1.49"; sha256="1crig9dps1fgkl78hp9mjqaahj7d0q772xsppskxa32pcz2f0sin"; depends=[fields gee MASS matrixStats mvtnorm]; }; aTSA = derive2 { name="aTSA"; version="3.1.2"; sha256="1p3spas0sxj08hkb8p6k2fy64w86prlw1hbnrqnrklr0hnkg2g54"; depends=[]; }; aVirtualTwins = derive2 { name="aVirtualTwins"; version="1.0.1"; sha256="1jg19ns3mxfycc11i2c152d83n4kqz3dd6d269sijnxrw80kzjki"; depends=[party randomForest rpart]; }; aaSEA = derive2 { name="aaSEA"; version="1.1.0"; sha256="0him4r8qyp0xssgrmdxjs45yn4d28h5anv4jyxxbbs9phb0m6j3h"; depends=[Bios2cor DT Hmisc magrittr networkD3 plotly seqinr shiny shinydashboard]; }; @@ -4906,20 +5025,18 @@ in with self; { abcADM = derive2 { name="abcADM"; version="1.0"; sha256="0vcabnnnwc0psv9v3rda5aap9s8cq1pjh02zva3ki64hlavf2a10"; depends=[BH Rcpp]; }; abcdeFBA = derive2 { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[corrplot lattice rgl Rglpk]; }; abcrf = derive2 { name="abcrf"; version="1.8.1"; sha256="1ghbd24yhqy3xhdxas6ccn84nkavqpgldx5ck8kijknc7qjm8k27"; depends=[doParallel foreach MASS matrixStats ranger Rcpp RcppArmadillo readr stringr]; }; - abcrlda = derive2 { name="abcrlda"; version="1.0.2"; sha256="0zjdrbg3zx0znqnh0dvmifs9c12b8vjhbaf3nbwab9xh25nsmg75"; depends=[]; }; + abcrlda = derive2 { name="abcrlda"; version="1.0.3"; sha256="04pcdnk2szfpc2ylcw5ds7y895ivy03bycal03kxw7cwylzxasks"; depends=[]; }; abctools = derive2 { name="abctools"; version="1.1.3"; sha256="07s9dg10i8lsxl73b4n2hynca2fjgb0ykb0dz8c3zv6cgw3cyx97"; depends=[abc abind Hmisc plyr]; }; abd = derive2 { name="abd"; version="0.2-8"; sha256="191gspqzdv573vaw624ri0f5cm6v4j524bjs74d4a1hn3kn6r9b7"; depends=[lattice mosaic nlme]; }; abdiv = derive2 { name="abdiv"; version="0.2.0"; sha256="053l94br8sdy30078ssncq5i5zvdxa3m72ymbwbh0cm3zmsljj29"; depends=[ape]; }; abe = derive2 { name="abe"; version="3.0.1"; sha256="1f19h3xzzmjhvwc1rrb8z0rai3ip03y4gdi2gg9bfr5sg2nfklk6"; depends=[]; }; abf2 = derive2 { name="abf2"; version="0.7-1"; sha256="0d65mc1w4pbiv7xaqzdlw1bfsxf25587rv597hh41vs0j0zlfpxx"; depends=[]; }; abind = derive2 { name="abind"; version="1.4-5"; sha256="0b1zd8jbnl6l292cr9rb50m09fy3ylxvzkpgi5lfb1nbzddcwfis"; depends=[]; }; - abjutils = derive2 { name="abjutils"; version="0.2.3"; sha256="0n4zps65y3zg0gfzlv97w91si52a9izkncirskbkj5x9hk0nhxcv"; depends=[devtools dplyr furrr future glue httr magrittr progress purrr readr rlang rstudioapi scales stringi stringr tibble tidyr]; }; - abn = derive2 { name="abn"; version="2.2"; sha256="19w6bdjyp4zwqs6p0flry4qxqynf9rh8ykdrfrp61wrdf7kysw0d"; depends=[lme4 MASS nnet Rcpp RcppArmadillo rjags]; }; + abjutils = derive2 { name="abjutils"; version="0.3.1"; sha256="18mmlkqsrjfclk8islfjdsp8sbw6dpjj5x45kqilxdiss69gg5zd"; depends=[dplyr magrittr purrr rlang rstudioapi stringi stringr tidyr]; }; abnormality = derive2 { name="abnormality"; version="0.1.0"; sha256="1fzfskl9akl06nliy8hkv2a0pznpj8pwcypg3gj5r2nzvr3kan9v"; depends=[MASS Matrix]; }; abodOutlier = derive2 { name="abodOutlier"; version="0.1"; sha256="1pvhgxmh23br84r0fbmv7g53z2427birdja96a67vqgz18r3fdvj"; depends=[cluster]; }; abstractr = derive2 { name="abstractr"; version="0.1.0"; sha256="1ymwp7syrynwd4i8aj2x5n8jdi9d96fjzl6jb09n0bnr5fgl7vig"; depends=[colourpicker emojifont ggplot2 gridExtra rintrojs shiny shinythemes]; }; abtest = derive2 { name="abtest"; version="0.2.1"; sha256="1zfd13d7dplawk24dbdr1ka8cbdp5w6sxb0zlm7k4dhvn6ksi8h0"; depends=[Matrix mvtnorm plotrix qgam RColorBrewer Rcpp sn truncnorm]; }; - abundant = derive2 { name="abundant"; version="1.1"; sha256="1m76qdmqvwpgm0sihazi2dna7cgsz9rljal18vgffb5wamwmg9k7"; depends=[QUIC]; }; acc = derive2 { name="acc"; version="1.3.3"; sha256="1ii2vm47djxbixa75h690q1s2f9m9x6i8nkygik93j6dayr6kr1m"; depends=[circlize DBI ggplot2 iterators mhsmm nleqslv PhysicalActivity plyr R_utils Rcpp RcppArmadillo RSQLite zoo]; }; accSDA = derive2 { name="accSDA"; version="1.0.0"; sha256="0sgxy5y8kkc1n35657kifwfjsba7y5m1vbr7rkk5lmbpkzahqm61"; depends=[ggplot2 ggthemes gridExtra MASS rARPACK sparseLDA]; }; accelerometry = derive2 { name="accelerometry"; version="3.1.2"; sha256="13xzrwhr4i1nj9c8vrmfdg2rmrc8n446iihcyxmy99sm99hpzyip"; depends=[dvmisc Rcpp]; }; @@ -4941,19 +5058,21 @@ in with self; { acs = derive2 { name="acs"; version="2.1.4"; sha256="0ajw9rf8l8akcvgqvbxjvryc6wjx74521xyxswz2b0bky3m6kah5"; depends=[httr plyr stringr XML]; }; acss = derive2 { name="acss"; version="0.2-5"; sha256="0cqa60544f58l5qd7h6xmsir40b9hqnq6pqgd5hfx2j2l5n7qhmk"; depends=[acss_data zoo]; }; acss_data = derive2 { name="acss.data"; version="1.0"; sha256="09kl4179ipr8bq19g89xcdi1xxs397zcx5cvgp6viy8gn687ilgv"; depends=[]; }; + actel = derive2 { name="actel"; version="1.1.0"; sha256="1v6bjf52ilgh5g6b63hw44fr2bkxyi3m69gavdphdhrcf06jzvxm"; depends=[circular data_table DiagrammeR DiagrammeRsvg fasttime ggplot2 knitr readr reshape2 rmarkdown rsvg scales stringi stringr svglite]; }; activPAL = derive2 { name="activPAL"; version="0.1.3"; sha256="1h6hp5z89ji73gdzxy1dgbfwjysiy5lvcqh90xagpb7sa7ahs3na"; depends=[devtools dplyr ggplot2 lubridate magrittr tidyr]; }; activegp = derive2 { name="activegp"; version="1.0.4"; sha256="0sqx2pjy0mw8gls4k4qwl64ip55kgs3k10dfdixdrqly035rhr37"; depends=[hetGP lhs numDeriv Rcpp RcppArmadillo]; }; activity = derive2 { name="activity"; version="1.3"; sha256="12imqj366dp6pam5gap6ji56p5wf1073xz5g4iikfxf5l8snxw92"; depends=[circular insol pbapply]; }; activityCounts = derive2 { name="activityCounts"; version="0.1.2"; sha256="0zgxr2sk3a8kmygfxx1p5hnrfwdkxx7php6jlrhm8wv6052ck8jz"; depends=[lubridate magrittr seewave signal tibble]; }; activpalProcessing = derive2 { name="activpalProcessing"; version="1.0.2"; sha256="1y0bjx2qx53iy930y9iww4q1yzjj8y16cwgixk1mq3w4g1f116d1"; depends=[chron]; }; actogrammr = derive2 { name="actogrammr"; version="0.2.3"; sha256="1jzvarmd41yqlrkagzlc8m19n5mn0w0b36fy50lyvgrfsafjfbqa"; depends=[dplyr ggplot2 lubridate readr tidyr]; }; - actuar = derive2 { name="actuar"; version="2.3-3"; sha256="0aw3hlan5y22mdqk1wvnw9ksqhwp4yy5hi0dpv21p7s0hyxhphih"; depends=[expint]; }; + actuar = derive2 { name="actuar"; version="3.0-0"; sha256="0dkp1sczldzy7kj70qvh1q59jhsq1brjybmxdz43jnx63y45llpz"; depends=[expint]; }; actuaryr = derive2 { name="actuaryr"; version="1.1.1"; sha256="08dzn565ax2l2hrn2m32k6magjbskybywl0hsgkg11nrjvkznwnx"; depends=[crayon dplyr lubridate magrittr purrr tibble]; }; ada = derive2 { name="ada"; version="2.0-5"; sha256="1h3a07czp0w3hrhjcg1fz721y8vsfclzqi3rq8qfzgpfb4h1f06r"; depends=[rpart]; }; adabag = derive2 { name="adabag"; version="4.2"; sha256="109wrl1pwvmyv2l909hrvk7dg4aa9pv449mvdycp50zwrsw9w0a7"; depends=[caret doParallel foreach rpart]; }; adagio = derive2 { name="adagio"; version="0.7.1"; sha256="1h9l0ddrxq8y35iy9hdkxdvdwsqpnpkzzbkbwwhm4380lq1m7a3k"; depends=[]; }; - adamethods = derive2 { name="adamethods"; version="1.2"; sha256="0mp73zh5x6h18gv29v981kb9n632kb58lvlcxwr6vcvrx393nrxh"; depends=[Anthropometry archetypes FNN foreach nnls tolerance univOutl]; }; + adamethods = derive2 { name="adamethods"; version="1.2.1"; sha256="150awbd3skb1mqca18bqjykhyycqw8crviw66s6qrcnmcsbk77pj"; depends=[Anthropometry archetypes FNN foreach nnls tolerance univOutl]; }; adapr = derive2 { name="adapr"; version="2.0.0"; sha256="1s57jdbi5pik56xjz1d4438ax6cywg2yq2s47h5g6wrwvpgr1qfw"; depends=[archivist devtools digest doParallel gdata ggplot2 git2r igraph knitr plotly plyr rmarkdown shiny shinydashboard versions]; }; + adapt4pv = derive2 { name="adapt4pv"; version="0.1.0"; sha256="0j0vdil277y035bqff3kwwrimjsv1pzfzj6qshyj7xh80dj6qsz8"; depends=[doParallel foreach glmnet Matrix speedglm xgboost]; }; adaptMCMC = derive2 { name="adaptMCMC"; version="1.3"; sha256="08v11rl0p4w94knb0yzs1ysj42xillya62yaw3zm40d4pqv7vcky"; depends=[coda Matrix]; }; adaptMT = derive2 { name="adaptMT"; version="1.0.0"; sha256="1yllz1zd4cryf5bj8b2lcrj6zl79yjkllyh9p02ikryy5qmg419b"; depends=[]; }; adaptTest = derive2 { name="adaptTest"; version="1.0"; sha256="08d7a5dlzhaj236jvaw3c91008l66vf5i4k5anhcs32a3j8yh2iv"; depends=[lattice]; }; @@ -4962,8 +5081,10 @@ in with self; { adaptivetau = derive2 { name="adaptivetau"; version="2.2-3"; sha256="1jficl4yidix35q8yqs3pcv813wq3pg4hpw4ah4dprvg95bl7wwx"; depends=[]; }; adaptsmoFMRI = derive2 { name="adaptsmoFMRI"; version="1.1"; sha256="1h79gh1bd6s2xhwf4whh72wf2cz4di2p8dnlf6192mfg108qc6nw"; depends=[coda Matrix MCMCpack mvtnorm spatstat]; }; add2ggplot = derive2 { name="add2ggplot"; version="0.3.0"; sha256="0c94i1cfp2pvplvxmfvvz2fyj026r1jnax05mrzrc7ppnqzy25y0"; depends=[ggplot2 magick magrittr RColorBrewer zeallot]; }; + addScales = derive2 { name="addScales"; version="1.0-1"; sha256="1bw4ljyyswdhqyir9i6lj0mg9lm6ry4zpqp2h6w2bpk37rvs1w38"; depends=[lattice]; }; addhaz = derive2 { name="addhaz"; version="0.5"; sha256="1709jq9rp5lhqk0qpk8zkdwzhcv1bcach8mm7yiz7hzcc1mgxb12"; depends=[boot MASS Matrix]; }; addhazard = derive2 { name="addhazard"; version="1.1.0"; sha256="0hk7br52wjmq605xgslv8lspr35aqpdgkiz2yljz31khy3y3vi8c"; depends=[ahaz rootSolve survival]; }; + addinsJoaoMelo = derive2 { name="addinsJoaoMelo"; version="0.1.0"; sha256="1slx9vfcpb468asvgcj0vh7djc5rndzdpcp96qmnis77fx67xj5s"; depends=[dplyr purrr rstudioapi stringr]; }; addinsOutline = derive2 { name="addinsOutline"; version="0.1.6"; sha256="125qfqbpv5xflw8qlyh8m3iyd6biyp3arls3z7y8bqkbghifl730"; depends=[dplyr DT fs miniUI rmarkdown rstudioapi shiny shinyFiles stringr tibble yaml]; }; addinslist = derive2 { name="addinslist"; version="0.3"; sha256="0rw87zxlq3b7ka782qwqbn2cc7w1cwcpg68l8s1mkrdgyaar4wr0"; depends=[curl DT miniUI rappdirs remotes rmarkdown rvest shiny shinyjs xml2]; }; additiveDEA = derive2 { name="additiveDEA"; version="1.1"; sha256="15nxpdybsda6yhjk23bpafr8v1zdx8332pcxf26k795q3ypjpiy2"; depends=[Benchmarking lpSolveAPI]; }; @@ -4972,7 +5093,7 @@ in with self; { ade4 = derive2 { name="ade4"; version="1.7-15"; sha256="1xpxznlqm8wb4d5z2dcrl0wi3jjciq2hr5rcx2b5aaipiiyzm1ij"; depends=[MASS pixmap sp]; }; ade4TkGUI = derive2 { name="ade4TkGUI"; version="0.3-0"; sha256="1k1d5vck8plv6rq9nn664p73nhd4k3kah52fvqc3vg2zv1hbizzk"; depends=[ade4 adegraphics lattice tkrplot]; }; adeba = derive2 { name="adeba"; version="1.1.2"; sha256="1z1law3qh6l902g62y8yapk4nypdmb20jmpwhxp9jbglalw9lm73"; depends=[mixtools pdist Rcpp]; }; - adegenet = derive2 { name="adegenet"; version="2.1.2"; sha256="01fgrgbiddz2q4l3mx637hhwbs7r0c43yw7vpwl8p8pwbm3nykz0"; depends=[ade4 ape boot dplyr ggplot2 igraph MASS reshape2 seqinr shiny spdep vegan]; }; + adegenet = derive2 { name="adegenet"; version="2.1.3"; sha256="1ipnawi0qfd4rfwj37igvh36x1a9d8x4n7xynn1jcr12rd713407"; depends=[ade4 ape boot dplyr ggplot2 igraph MASS reshape2 seqinr shiny spdep vegan]; }; adegraphics = derive2 { name="adegraphics"; version="1.0-15"; sha256="12k77x6vnjz9s9dvz1r81ajqcl1nh9g33r7dymaqk2cs5q3wvfw7"; depends=[ade4 KernSmooth lattice latticeExtra RColorBrewer sp]; }; adehabitatHR = derive2 { name="adehabitatHR"; version="0.4.18"; sha256="0ss3fhpa7i2m4g55ajy9pgwgj393jbw58khgywc3gw9ys53h02sd"; depends=[ade4 adehabitatLT adehabitatMA deldir sp]; }; adehabitatHS = derive2 { name="adehabitatHS"; version="0.3.15"; sha256="1qhdwyjic4q24kk0pwrd0r8vdg5clv4g1hbdq07rl71jbcscdhvz"; depends=[ade4 adehabitatHR adehabitatMA sp]; }; @@ -4987,19 +5108,20 @@ in with self; { adhoc = derive2 { name="adhoc"; version="1.1"; sha256="0a59fv9glcqh4zzd0887ndrhlcaylja6vay2ifajp8an29gjk1vv"; depends=[ape pegas polynom]; }; adimpro = derive2 { name="adimpro"; version="0.9.2"; sha256="1ajq2889y70lxjdpf5zdg7zkz35i3i92li72wb7nbfngxmw47xzv"; depends=[awsMethods]; }; adiv = derive2 { name="adiv"; version="2.0"; sha256="1lp5vylqj8n29smjp3611gxw0nfgk5blcwrhk3c73w1v6695488b"; depends=[ade4 adegraphics adephylo ape cluster FactoMineR phylobase phytools rgl]; }; - adjclust = derive2 { name="adjclust"; version="0.5.9"; sha256="1nrsl9ca7729qfmxi5xzsvkqrx3dkjyr3al4vz3iqphfxv9sdl4h"; depends=[capushe Matrix matrixStats]; }; + adjclust = derive2 { name="adjclust"; version="0.5.99"; sha256="1ij09mlmsqamvr8gmajg82qfn0l7q4x7hkavm7w42ndzjwwdmf7b"; depends=[capushe Matrix matrixStats]; }; adjustedcranlogs = derive2 { name="adjustedcranlogs"; version="0.1.0"; sha256="08apfvpqvnnalx230p4qf5ckrwm1sgzras4zfrysgym5d4map9ci"; depends=[cranlogs dplyr lubridate rvest xml2]; }; adklakedata = derive2 { name="adklakedata"; version="0.6.1"; sha256="1lzj3ib4bgfkq5lq12n47pwc52h7k35xbbwj6brwsgx1gd4fx3x6"; depends=[httr rappdirs]; }; adlift = derive2 { name="adlift"; version="1.4-1"; sha256="14q7fnhlqvxdhnfjhdhfmadz241srplbm069a7ybbsql21cphpf3"; depends=[EbayesThresh]; }; admisc = derive2 { name="admisc"; version="0.8"; sha256="071xrqimizhs7qgav84fggw8cls4dhhqvzp8f1g0xw1wvj0wnfx1"; depends=[]; }; + admixr = derive2 { name="admixr"; version="0.9.1"; sha256="0wszpzs53cbnha13g2ldpq6z5ndw2v2xgrzadqkjm3hsp6akv4bl"; depends=[dplyr magrittr readr rlang stringr tibble]; }; admixturegraph = derive2 { name="admixturegraph"; version="1.0.2"; sha256="0ld4qyyvbnr5lz9ff64wjwif4c9xnqyjmbfgbl9bk6pia98zppl3"; depends=[doParallel dplyr foreach ggplot2 MASS neldermead pracma]; }; admmDensestSubmatrix = derive2 { name="admmDensestSubmatrix"; version="0.1.0"; sha256="1a5lfm10aj6wdjibdnmffn75zvy6x69w8nqcx2i23gxg6v0xlqcl"; depends=[Rdpack]; }; adnuts = derive2 { name="adnuts"; version="1.0.1"; sha256="1l52f33yzbvcz27iw0k6iwcnfanr65lw206d7w4609k2vmlw8ink"; depends=[ellipse R2admb rstan]; }; adoption = derive2 { name="adoption"; version="0.6.2"; sha256="18mjhsh19bjmh27sv5fiay0xv1la0qy96v48b093f7kqfx4c21xb"; depends=[quadprog RandomFieldsUtils tkrplot]; }; adoptr = derive2 { name="adoptr"; version="0.3.2"; sha256="1s35wm1gkbygzbnma5mwpr60zml4yf74ip5fzkj0vfi77b3lclrr"; depends=[glue nloptr]; }; adpss = derive2 { name="adpss"; version="0.1.1"; sha256="0p2gyfc4rxmms8zdsq4hjsh1njfl2s736arq8aq1am2wh1w9k5ch"; depends=[Rcpp]; }; - ads = derive2 { name="ads"; version="1.5-3"; sha256="1k1japzcf0mafxkv9dlzaqz9n4c749lsx0lja4wj327ninpdcfy4"; depends=[ade4 spatstat]; }; advclust = derive2 { name="advclust"; version="0.4"; sha256="1g8a8q4zh6d4152jb66fh7wj7k6ks5k4kfcazzw70jdn10yi6b38"; depends=[clue ggplot2 knitr MASS reshape2]; }; + adventr = derive2 { name="adventr"; version="0.1.8"; sha256="0nja1a2xhaimz1fg2bb838x9a37sswjqjc68mp59gbdwkfpdii37"; depends=[BayesFactor boot car dplyr effects effsize forcats GGally ggplot2 Hmisc learnr lm_beta nlme readr robust sandwich sjstats tidyr WRS2]; }; adwave = derive2 { name="adwave"; version="1.3"; sha256="11iy50ng0zxvwsvdsvx262j8zgqaai308lp5is47az7xzvk57mx7"; depends=[waveslim]; }; adwordsR = derive2 { name="adwordsR"; version="0.3.1"; sha256="1w5qg4psm8pj89f09pz7in8zkafaimik1n6hx29y55jpmbxbk2gn"; depends=[RCurl rjson]; }; aemo = derive2 { name="aemo"; version="0.3.0"; sha256="108scwyf0dyvn969cks3ikbj2pf2g4dw051asahx26pl0ggw7ijw"; depends=[assertthat dplyr lubridate stringr]; }; @@ -5009,13 +5131,13 @@ in with self; { affluenceIndex = derive2 { name="affluenceIndex"; version="1.0"; sha256="1nb2dlsnvjsvkyrfdaskmpr3kv3qgdfb60xgmzvscfli0yf4dzr1"; depends=[]; }; afmToolkit = derive2 { name="afmToolkit"; version="0.0.1"; sha256="1pm3xyh9vq10mmfgknlvlfr9f027xprrgy1dvbbxpi7f111hv1gl"; depends=[assertthat DBI dplyr ggplot2 gridExtra minpack_lm scales tibble]; }; afpt = derive2 { name="afpt"; version="1.1.0.1"; sha256="0cg5cdm9nl1hs6f3j0ljpw4bkqvh3ksyj615b9nnbqs5k28lyds9"; depends=[]; }; - aftgee = derive2 { name="aftgee"; version="1.1.3"; sha256="1zkb99938q8pp318a0c0bpgzcqxc8ijygfz904lz6n40c5i2i9lz"; depends=[BB geepack MASS survival]; }; + aftgee = derive2 { name="aftgee"; version="1.1.5"; sha256="12r020kyqq7zpdgnw4wv0rmdj4b82vdrxpv4zw4w8ij6zdgp2mg6"; depends=[BB geepack MASS survival]; }; agRee = derive2 { name="agRee"; version="0.5-3"; sha256="1wi8jn14kpsj5z49my6fz8j6zxysddxm8svw86cnzsmnbj6mzq7x"; depends=[coda lme4 miscF R2jags]; }; aggregation = derive2 { name="aggregation"; version="1.0.1"; sha256="0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46"; depends=[]; }; agop = derive2 { name="agop"; version="0.2-3"; sha256="1z90a07wzn5z4cbafwpfh3l3v1bgq9g89qbdjm51f78zynnb27dk"; depends=[]; }; agriTutorial = derive2 { name="agriTutorial"; version="0.1.5"; sha256="0c0p0bqcrnx34q5brnvgq10wkzahvgyybaz2xfmcghbdvzahd2dx"; depends=[emmeans ggplot2 lattice lmerTest nlme pbkrtest]; }; - agricolae = derive2 { name="agricolae"; version="1.3-2"; sha256="1g8pmmslc6kcx2bv16cc4alr3cwf69q8drr5pkyp1vq34hs0a8mf"; depends=[AlgDesign cluster klaR MASS nlme]; }; - agridat = derive2 { name="agridat"; version="1.16"; sha256="1kgmjrj207md86qivadkmv3s2gh3hi9zv63bsj8b9vlcd9f58pfk"; depends=[]; }; + agricolae = derive2 { name="agricolae"; version="1.3-3"; sha256="13hzlbm7khpz3xq0d7ijfvy4n489y97l3kzdspsqlz7rywbn7cg9"; depends=[AlgDesign cluster klaR MASS nlme]; }; + agridat = derive2 { name="agridat"; version="1.17"; sha256="0pgk9p6ynnz03k1ch9c15xbl777b0ml80shkbkxlnqn297q736vq"; depends=[]; }; agriwater = derive2 { name="agriwater"; version="1.0.0"; sha256="0m1dpv69nf3pjp63z3a5710skgb6sbrmjv6b8rxvq9lrw63993g9"; depends=[raster rgdal sp]; }; agrmt = derive2 { name="agrmt"; version="1.40.4"; sha256="1y2gnq6b4zkxknygg73r8qrd435y7c69iqn8i56kwk1ccc1rwddx"; depends=[]; }; agroclim = derive2 { name="agroclim"; version="0.1.0"; sha256="16cyqplzmwziqwkicix0sr06zhc0yx615iv3hda0cxbdyf2rllk3"; depends=[abind cowplot easyNCDF ggforce ggplot2 ggpubr gtable multiApply ncdf4 plyr raster reshape sp zoo]; }; @@ -5029,38 +5151,42 @@ in with self; { aiRthermo = derive2 { name="aiRthermo"; version="1.2.1"; sha256="058082qdfi1pbdgf26vbfahri1kbc8b2l816q4dq89j5aj5is0a2"; depends=[]; }; aibd = derive2 { name="aibd"; version="0.1.8"; sha256="1pgfvz3b276y9pl6m3rghjlvhkrqp04w8gj3zzl7j446d372lm9h"; depends=[commonsMath rscala]; }; aidar = derive2 { name="aidar"; version="1.0.5"; sha256="1q2iz2qzh2yl0v0sc537xq4vbx2nblym3kv419vr7jvrghdpx3vj"; depends=[XML]; }; + aif360 = derive2 { name="aif360"; version="0.1.0"; sha256="0r9x9q8kc9alk1j3p0y23ispcbfac89q0c043vh8dw89q267plf8"; depends=[reticulate rstudioapi]; }; aimPlot = derive2 { name="aimPlot"; version="1.0.0"; sha256="1d52b7kccxba6j7n0gbd7pzs0p87zn32vv8gdf2f7lyr75qzgz7x"; depends=[ggplot2]; }; - aimsir17 = derive2 { name="aimsir17"; version="0.0.1"; sha256="0d3zygsnflymmfh7pflnynsf1klxjjyrqz5g5fnj2vwsicb40l4x"; depends=[tibble]; }; + aimsir17 = derive2 { name="aimsir17"; version="0.0.2"; sha256="0v804maqaygqhw3y9wqap3h9vvjniqnnbsv1psjj500r2yscicxs"; depends=[tibble]; }; airGR = derive2 { name="airGR"; version="1.4.3.65"; sha256="1x9zf6bbcaflszqzaki940xy33g4wj4yqsgbg836a1dwv1crd1l7"; depends=[]; }; airGRteaching = derive2 { name="airGRteaching"; version="0.2.8.69"; sha256="0z2iwqr0qm9wv7hl337l0kbjnc9h0pjahwnk3y89x8frisa2cc32"; depends=[airGR dygraphs markdown plotrix shiny shinyjs xts]; }; aire_zmvm = derive2 { name="aire.zmvm"; version="0.8.2"; sha256="0z9knqdl7ihx2vph154qi1lh4s6yvlcw6kwry8k47mhh3p7pynsd"; depends=[dplyr httr lubridate progress readr readxl rvest sp stringr tidyr xml2]; }; airportr = derive2 { name="airportr"; version="0.1.3"; sha256="1h8h0cdfqgxv8cf9hp82sx5n4a1z88qyyxicj7d2kmmybqqz2r5n"; depends=[dplyr]; }; + airports = derive2 { name="airports"; version="0.1.0"; sha256="1ahfqqfcvr731hj0h7d00jd87h1adiryh42sv4mh318lk5rglm6f"; depends=[]; }; airqualityES = derive2 { name="airqualityES"; version="1.0.0"; sha256="1kf673ajk06ggy9524lip5flpfgq0gql7d46kgnri8l3kbzw7zcj"; depends=[tibble]; }; - airr = derive2 { name="airr"; version="1.2.0"; sha256="1vswbjmyhygmyqymkfxad9nwsbcgaggian1fyrx63w0y9c4dfv1h"; depends=[readr stringi yaml]; }; + airr = derive2 { name="airr"; version="1.3.0"; sha256="1lpzd8qz1dr6kkrbc8lnqbknxyamv4y6ahad5w9q5dgwdwn0kpym"; depends=[readr stringi yaml]; }; + airt = derive2 { name="airt"; version="0.1.0"; sha256="0vzc9i2jj20dk4bb818fvg2xb4ik472cn9wrijw4c2qynl5fz7mz"; depends=[mirt pracma tidyr]; }; ajv = derive2 { name="ajv"; version="1.0.0"; sha256="1qd5ncb7rdnnvqfknsvq9nrpxrh0zv3jyh4b91dcvfvhp262vfrm"; depends=[RJSONIO V8 yaml]; }; akc = derive2 { name="akc"; version="0.9.4"; sha256="1bvlj3h1fa3n9dkfhr5zhh8j3m8wafr6370sfg24vjwmiqpmx96j"; depends=[data_table dplyr ggforce ggplot2 ggraph ggwordcloud igraph magrittr rlang stringr textstem tibble tidygraph tidytext widyr]; }; - akima = derive2 { name="akima"; version="0.6-2"; sha256="1klprj4a2pgy5pwdwnrn3siisi2lh8hr4z6vz38sdvjkcmakxnk1"; depends=[sp]; }; + akima = derive2 { name="akima"; version="0.6-2.1"; sha256="086q4ip6j226p8z5iqzfg551i15l5c0rnf4y4zavmpmqvwd2szz2"; depends=[sp]; }; akmeans = derive2 { name="akmeans"; version="1.1"; sha256="1nqbxbx583n0h2zmpy002rlmr6j86j6bg76xj5c69brrh59dpyw1"; depends=[]; }; akmedoids = derive2 { name="akmedoids"; version="0.1.5"; sha256="0yn5rjgb5rrhphgbjn49098ybkmzda6yxzfqgbsppfgjidrafhza"; depends=[ggplot2 Hmisc kml longitudinalData reshape2 signal]; }; alabama = derive2 { name="alabama"; version="2015.3-1"; sha256="0mlgk929gdismikwx4k2ndqq57nnqj7mlgvd3479b214hksgq036"; depends=[numDeriv]; }; - alakazam = derive2 { name="alakazam"; version="0.3.0"; sha256="1jgamm75apjpij3yfzx62c44hfiyv1gdcmcb6n4hgbdszl2ii2bg"; depends=[ape dplyr ggplot2 igraph lazyeval Matrix progress Rcpp readr rlang scales seqinr stringi tibble tidyr]; }; + alakazam = derive2 { name="alakazam"; version="1.0.2"; sha256="0ba0gx682g3swbyyw4nmhxnnw0lzxb8rbapcgfq9jaagn8q63d0f"; depends=[ape dplyr ggplot2 igraph lazyeval Matrix progress Rcpp readr rlang scales seqinr stringi tibble tidyr]; }; albopictus = derive2 { name="albopictus"; version="0.5"; sha256="0kw1agm9jqi9wl5zbx8bryngy751g3sih36rgbrx0m2170cy42d9"; depends=[]; }; ald = derive2 { name="ald"; version="1.2"; sha256="1xmvxmyc1nmsrlyr0rvzz20jx6g1f2jvxpg9f39v48ngg5gmanjj"; depends=[]; }; alfr = derive2 { name="alfr"; version="1.2.1"; sha256="1ldq8gvgqjjabn86hdqb6hxch8x4hvr6djv5ly4mx039dipc8jxi"; depends=[httr jsonlite magrittr stringr]; }; alfred = derive2 { name="alfred"; version="0.1.7"; sha256="1467rg5q2dqbqy8vj2061glb1gksq96rnjlifgyiv5rarwzy9b4y"; depends=[dplyr jsonlite lubridate magrittr tibble tidyr]; }; algaeClassify = derive2 { name="algaeClassify"; version="1.2.0"; sha256="1sna5rij2ngpgqfz5cviqdbyr43xph8cbjc4vnm238n72zgg7cb6"; depends=[httr lubridate plyr RCurl rvest taxize XML xml2]; }; + algo = derive2 { name="algo"; version="0.1.0"; sha256="1g18p8jyj9crkqm16y2im3r9xzqwa36javv4vi1wvsqkg31d81si"; depends=[glue htmltools jsonlite]; }; algorithmia = derive2 { name="algorithmia"; version="0.2.0"; sha256="0h1llcwk1qkxg26ikib44nd19da1q39n3gd8jwwb36687drl26qp"; depends=[base64enc httr rjson]; }; - aliases2entrez = derive2 { name="aliases2entrez"; version="0.1.0"; sha256="043aglaygy0mx6299qvh7nng7x80d3b66najd9nbxc564vr0n4j2"; depends=[AnnotationDbi doParallel foreach limma org_Hs_eg_db RCurl readr]; }; + aliases2entrez = derive2 { name="aliases2entrez"; version="0.1.1"; sha256="0gv76a8iwmpqrk3iw35mj7jzyfna7lga2amy5csgfpsz8w54jdd6"; depends=[AnnotationDbi doParallel foreach limma org_Hs_eg_db RCurl readr]; }; alignfigR = derive2 { name="alignfigR"; version="0.1.1"; sha256="0jsj0h7zpzj6ynfydl8qbggm03xx8db769rli7rcx9909xdxabk6"; depends=[ggplot2]; }; alineR = derive2 { name="alineR"; version="1.1.4"; sha256="1gi4pl7ij60pz85yjiga5kvldraj9n3nhcyqdxrigs0cqvdwg3ar"; depends=[]; }; allan = derive2 { name="allan"; version="1.01"; sha256="02bv9d5ywbq67achfjifb3i7iiaaxa8r9x3qvpri2jl1cxnlf27m"; depends=[biglm]; }; - allanvar = derive2 { name="allanvar"; version="1.1"; sha256="142wy1mf4jbp4hy756rz95w24f4j1dgf14f1n5sd09dg4w98j7xg"; depends=[gplots]; }; alleHap = derive2 { name="alleHap"; version="0.9.9"; sha256="1fqrw645s3f5363p7jl3dzy8xphxdr1v6wdsjmqcqwpgvjqfr2zz"; depends=[abind]; }; allelematch = derive2 { name="allelematch"; version="2.5.1"; sha256="00117cj01psax4rjvy2nja5r2ss9l8zzjicczh46kp401i1ghmwc"; depends=[dynamicTreeCut]; }; allelic = derive2 { name="allelic"; version="0.1"; sha256="0xs4kd3vqb5ph8kqc3lcqgirrdkz8b627pvnczvci2g0sr3cl18j"; depends=[]; }; - allestimates = derive2 { name="allestimates"; version="0.1.6"; sha256="1jrp5nh9g2alx8aycysiymhylm2r7lqf8s68ppbgy6liw3iazym2"; depends=[broom dplyr ggplot2 MASS speedglm stringr survival tibble tidyr]; }; + allestimates = derive2 { name="allestimates"; version="0.1.8"; sha256="0wddcc4gdngwikx5ajr8yf45hk05ijqqczipss253y64viwgi3by"; depends=[broom dplyr ggplot2 speedglm stringr survival tidyr]; }; alluvial = derive2 { name="alluvial"; version="0.1-2"; sha256="039frwrsxq1lb97s7vf2vbyyadimkigs628ymym06fxka53drdkp"; depends=[]; }; - alookr = derive2 { name="alookr"; version="0.3.0"; sha256="0xd80mypg07ifsx17aivciknk231yhi34c8vzwjnyasg2h88s3is"; depends=[caTools cli dlookr dplyr future ggmosaic ggplot2 MASS MLmetrics party purrr randomForest ranger RColorBrewer rlang ROCR rpart tibble tidyr tidyselect unbalanced]; }; + almanac = derive2 { name="almanac"; version="0.1.1"; sha256="0qsczk74ihy7ac5c4dzd6ax5gfmr56wfnjxg396qc2c3xykb7dd5"; depends=[glue lubridate magrittr R6 rlang V8 vctrs]; }; + alookr = derive2 { name="alookr"; version="0.3.2"; sha256="197sbnfckk24vsp6znx8q26hlrkawiy69849fkwnzal0bwwqx4l3"; depends=[caTools cli dlookr dplyr future ggmosaic ggplot2 MASS MLmetrics party purrr randomForest ranger RColorBrewer rlang ROCR rpart tibble tidyr tidyselect unbalanced]; }; alpaca = derive2 { name="alpaca"; version="0.3.2"; sha256="07r13gyqb876p6zx3pydl414zrgc473dnyn5ja6hmzjmkv19lw4k"; depends=[data_table Formula MASS Rcpp RcppArmadillo]; }; alphaOutlier = derive2 { name="alphaOutlier"; version="1.2.0"; sha256="09yrbv7jsiymw5gzp8p92ki70v1fys2k75x4sb9s7wy3c58wn1cd"; depends=[nleqslv quantreg Rsolnp]; }; alphabetr = derive2 { name="alphabetr"; version="0.2.2"; sha256="1pmp6zwhgycb38y5jbvrbv2nza7gyjh508vy09ml483c2cysvc1r"; depends=[clue dplyr multicool Rcpp]; }; @@ -5072,8 +5198,7 @@ in with self; { alr4 = derive2 { name="alr4"; version="1.0.6"; sha256="0v98yzi0fcjxq0ak0w05001h8m9nfa9l0ann9bqvz8bwcmb3jlr2"; depends=[car effects]; }; altR2 = derive2 { name="altR2"; version="1.0.0"; sha256="15nvbq3n76p2857ipyf3q6rs2mwjqsp9gr3rmzbjfm8lrj0faxsv"; depends=[gsl purrr]; }; altair = derive2 { name="altair"; version="4.0.1"; sha256="0s3pvlh6y4h3ni5m8yli6gp6gps7pcpndag40ckr31302ai3bxvq"; depends=[assertthat htmlwidgets magrittr repr reticulate vegawidget]; }; - alterryx = derive2 { name="alterryx"; version="0.5.0"; sha256="1p9q4244bm7hf6my8q951idw41xa5gcrdl7znmsng9pwxh8dnz3h"; depends=[base64enc digest httr jsonlite]; }; - altmeta = derive2 { name="altmeta"; version="3.0"; sha256="0ga3w1igxfhmhxkvh20kjnxsbsx7lmcv894whpg8n59418s1h2gs"; depends=[coda lme4 Matrix metafor rjags]; }; + altmeta = derive2 { name="altmeta"; version="3.1"; sha256="1ifdy510m5xdvxzpfjrhjqmxgxr9yxki3vivlgzdcry119fhgh6c"; depends=[coda lme4 Matrix metafor rjags]; }; amap = derive2 { name="amap"; version="0.8-18"; sha256="0zpcb73w413na23f6giml9311jh0j0y766w2fh9i40d2h7bbvyvs"; depends=[]; }; ambhasGW = derive2 { name="ambhasGW"; version="0.0.2"; sha256="0v517i4whip45pk6bwlwval9pz367pcgzz62b2z22mrwgi6m6bck"; depends=[raster rgdal yaml]; }; ambient = derive2 { name="ambient"; version="1.0.0"; sha256="0b8nd8g0ydglql2cwi4wmlnv5kyid8q51vz0p08f9m5x73k3z2bd"; depends=[Rcpp rlang]; }; @@ -5084,20 +5209,22 @@ in with self; { aml = derive2 { name="aml"; version="0.1-1"; sha256="09xxlxp784wlb561apns3j8f2h9pfk497cy5pk8wr4hhqqv4d3al"; depends=[lars]; }; ammistability = derive2 { name="ammistability"; version="0.1.1"; sha256="1vp2857cwn4dd86vj8qf6h4z8hh5q2jvrlpmply8bf70mnmnq18h"; depends=[agricolae ggcorrplot ggplot2 Rdpack reshape2]; }; ampd = derive2 { name="ampd"; version="0.2"; sha256="0bi8qngd37n60ym516yjcahxc536vdwm60rq5ld32170hww69j7c"; depends=[]; }; - ampir = derive2 { name="ampir"; version="0.1.0"; sha256="1z9ha329fbji9jlly84cn7z2fxclk3n3w0xddq1mw1gqq3dyb8ba"; depends=[caret kernlab Peptides Rcpp]; }; - amt = derive2 { name="amt"; version="0.1.0"; sha256="0h7ifniqiq6cr0p42yjiykaindwkh1jf5wn0hzn2wg04x1cia995"; depends=[broom checkmate circular ctmm dplyr fitdistrplus FNN geosphere glue KernSmooth lazyeval leaflet lubridate magrittr maptools purrr raster Rcpp rgeos rlang sf sp survival tibble tidyr]; }; + ampir = derive2 { name="ampir"; version="1.0.0"; sha256="081ah5fvfa4f2yj9zigj5b069dr8z8qs6mwb20w08wldlgcy2a5x"; depends=[caret kernlab Peptides Rcpp]; }; + amt = derive2 { name="amt"; version="0.1.2"; sha256="174rxcalr2gb168ccc0wyj4b94hf1x37mrh4r3160xh2wvxgi84z"; depends=[broom checkmate circular ctmm dplyr fitdistrplus FNN geosphere KernSmooth leaflet lubridate magrittr maptools purrr raster Rcpp rgeos rlang sf sp survival tibble tidyr]; }; anMC = derive2 { name="anMC"; version="0.2.2"; sha256="0ab215nrqn535g9ayqzvgdckhwcrij1mc1296pvlj3grn3f8rhws"; depends=[mvtnorm Rcpp RcppArmadillo]; }; anacor = derive2 { name="anacor"; version="1.1-3"; sha256="0mj8g9p4fla0ax9jvcq7kii4lrhj8g872p11nys06anva22qjp51"; depends=[car colorspace fda]; }; analogsea = derive2 { name="analogsea"; version="0.8.0"; sha256="1naw9qh6rp1hz3mk19jir0qia1daizbfa695qbp1sg6rdh6is8ag"; depends=[httr jsonlite magrittr yaml]; }; - analogue = derive2 { name="analogue"; version="0.17-4"; sha256="02n4imkkfa4gqzwicvz3dpcfwk68rbh48pj5vn6cx6q15bzxdv0i"; depends=[brglm lattice MASS mgcv princurve vegan]; }; + analogue = derive2 { name="analogue"; version="0.17-5"; sha256="1iq0hdblpg1yb5ciralfxq7as9zwc58237hrzm0n51yb6a9vd1vd"; depends=[brglm lattice MASS mgcv princurve vegan]; }; analogueExtra = derive2 { name="analogueExtra"; version="0.1-1"; sha256="1s3qs10hf6hkna0bicid1mc8x8r449bl93xpgyw6lnsjgh2yx62c"; depends=[analogue rgl vegan3d]; }; - analysisPipelines = derive2 { name="analysisPipelines"; version="1.0.0"; sha256="1q0xhqzc2x3kvz6kray7ckm2i88k488jicsw7wngnywmjhl4z3ni"; depends=[devtools dplyr futile_logger ggplot2 magrittr pipeR proto purrr RCurl rlang]; }; + analysisPipelines = derive2 { name="analysisPipelines"; version="1.0.2"; sha256="1rxam52wrbcjrvixb35b9ha37i8a0fczby49vmgzpnrbvkc50ldx"; depends=[dplyr futile_logger ggplot2 magrittr pipeR proto purrr RCurl rlang]; }; analyz = derive2 { name="analyz"; version="1.4"; sha256="0qdh1gld2dkl0krbhm2vcqg8dfs03dn51rclgsw02554s06dlgxw"; depends=[]; }; + analyzer = derive2 { name="analyzer"; version="1.0.1"; sha256="1729dnghdca7dr4l5cxazg68ipkm63mvk2danwm3bva62sza29p6"; depends=[dplyr ggplot2 gridExtra]; }; anapuce = derive2 { name="anapuce"; version="2.3"; sha256="05k3ypy4dc8q4jv0by37k66pdwb1wmsd24i6nciris5knfdy9csg"; depends=[]; }; - anchoredDistr = derive2 { name="anchoredDistr"; version="1.0.3"; sha256="07q4np0zryb49cpi7w5iz0qna63cyp9nz13d8ws6x9ccg417r99a"; depends=[DBI dplyr ggplot2 np plyr reshape2 Rmisc RSQLite]; }; anchors = derive2 { name="anchors"; version="3.0-8"; sha256="12gd2526y7s2a8i6b9xma2c3sc6zxnwzl6sn8b50hbxizwr8d34j"; depends=[MASS rgenoud]; }; andrews = derive2 { name="andrews"; version="1.0"; sha256="130i86qkdy1xpcf611jpzqgmd17iik7j7spdcfwzk48f31biyp8v"; depends=[]; }; + andurinha = derive2 { name="andurinha"; version="0.0.2"; sha256="1cpz16zv3al6lmsqsb7dl5v6kml2a0hg084rbmwa4wsyk5ygl8bm"; depends=[cowplot ggplot2 plyr rlang signal tidyr]; }; anesrake = derive2 { name="anesrake"; version="0.80"; sha256="1p2g51w80jiadlf4asbnsw46asarzlzr5c1yfhdb31ymqxd7p76q"; depends=[Hmisc weights]; }; + anglr = derive2 { name="anglr"; version="0.7.0"; sha256="0yvpixpi3x83a1xjgcvc7khxc91q7n7k21dmf227wcjjj0mbhrdk"; depends=[colourvalues crsmeta dplyr gridBase magrittr palr png polyclip raster reproj rgl rlang RTriangle scales silicate sp terrainmeshr tibble unjoin viridis]; }; angstroms = derive2 { name="angstroms"; version="0.0.1"; sha256="1k8q4pkb5vcjfp2n2dga3q2ydmdxv020k5qzrb6w01ixrgf15d8l"; depends=[nabor ncdf4 proj4 raster sp spbabel]; }; aniDom = derive2 { name="aniDom"; version="0.1.4"; sha256="1h19q3f16g6kacawd2i9i5lg64q436dsbzk9isf3p2mr7p24xbas"; depends=[rptR]; }; anim_plots = derive2 { name="anim.plots"; version="0.2.1"; sha256="0z811y4zzrqas1ynrq4syhxvbcw2girxa6g9biry9d0qgq1w8cp1"; depends=[animation]; }; @@ -5108,54 +5235,58 @@ in with self; { aniview = derive2 { name="aniview"; version="0.1.0"; sha256="1klakkmdk4xllaxd0pllvxi4396n6rz2idz55niy91mp0fhcjhwf"; depends=[htmltools jsonlite]; }; anocva = derive2 { name="anocva"; version="0.1.1"; sha256="1byg40jla71k1901js5h9yq89j63d00vkm60id1fxlpv95c4wdrr"; depends=[cluster]; }; anoint = derive2 { name="anoint"; version="1.4"; sha256="10gdqgag9pddvxh80h458gagvv1474g4pcpa71cg3h7g62rqvmv5"; depends=[glmnet MASS survival]; }; - anomalize = derive2 { name="anomalize"; version="0.2.0"; sha256="155la2j9bfdwvaq8qv8gjgfy0y4bjpvrymgk0qzbz80hd771lh2j"; depends=[cli crayon dplyr ggplot2 glue purrr rlang rstudioapi sweep tibble tibbletime tidyr timetk]; }; - anomaly = derive2 { name="anomaly"; version="3.0.1"; sha256="1ccgvlv8vq3p1lpkj66da73v5z8ffl3bkx01j08mcgqkv90lppys"; depends=[assertive BH cowplot dplyr ggplot2 Rcpp Rdpack reshape2 rlang robustbase]; }; + anomalize = derive2 { name="anomalize"; version="0.2.1"; sha256="0fs70zsfawv4326xqnl6xfi4rg6xk3kakgrpyvlqqvfqhw6vx76v"; depends=[cli crayon dplyr ggplot2 glue purrr rlang rstudioapi sweep tibble tibbletime tidyr timetk]; }; + anomaly = derive2 { name="anomaly"; version="3.0.2"; sha256="0zypvgn59ryik6jrasqmhjyfi9ldp6145455nrb7dxfhk1bkp6kg"; depends=[assertive BH cowplot dplyr ggplot2 Rcpp Rdpack reshape2 rlang robustbase]; }; anominate = derive2 { name="anominate"; version="0.6"; sha256="01p2qkqf88bzhwywyass5r8dwg2ycflmkbzmsps7fzy0kv3xyb02"; depends=[coda MCMCpack pscl wnominate]; }; antaresEditObject = derive2 { name="antaresEditObject"; version="0.1.9"; sha256="09zmhzfdzxpp01wmdk230gff6zwgd5p2w3ppbq3a0df3f56x0hix"; depends=[antaresRead assertthat data_table whisker]; }; antaresProcessing = derive2 { name="antaresProcessing"; version="0.18.0"; sha256="1rw7g4706g4fdx7c7magxqj71h6iwkbslmyrqfwna4irnifjmv7g"; depends=[antaresRead data_table]; }; antaresRead = derive2 { name="antaresRead"; version="2.2.5"; sha256="10c3ql08211ylc271xk8ffnix3pzmnaylgf0ynwayp34hkgkf37h"; depends=[bit64 data_table lubridate plyr shiny stringr]; }; - antaresViz = derive2 { name="antaresViz"; version="0.15.1"; sha256="1qak4gkqpglmpavm5xm0amszqfzm3zgapxk81l5gn6ff9ilby7fp"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; }; - anthro = derive2 { name="anthro"; version="0.9.2"; sha256="15857msr80wqikf2rr7db3f8hhfwnaay10wnj27yig0yls46a99f"; depends=[survey]; }; + antaresViz = derive2 { name="antaresViz"; version="0.15.2"; sha256="1a3h3m34k0ihml8g7d90gy4z9ynyyi7dqlafw4frp90wmc8m1r9g"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; }; + anthro = derive2 { name="anthro"; version="0.9.3"; sha256="1jikrb1177j04fwwivw3dcpv1687jdph3l9xmxrbcghww1w0sfbk"; depends=[survey]; }; + anticlust = derive2 { name="anticlust"; version="0.5.0"; sha256="1w5pw6dvbnbfi6acpih9zbpyknl7wxr426kry64qhss25zvjw7a0"; depends=[Matrix RANN]; }; + antitrust = derive2 { name="antitrust"; version="0.99.14"; sha256="0mc7mgvhbfw9rp5w9vdd003mhp13pdjhrb8gybmkvan316mwygds"; depends=[BB evd MASS numDeriv]; }; antiword = derive2 { name="antiword"; version="1.3"; sha256="034znb0g9wwb8gi1r3z75v3sbb4mh83qrc4y8mbfx5lbgh8zhj6j"; depends=[sys]; }; anyLib = derive2 { name="anyLib"; version="1.0.5"; sha256="1x9x58hhkkwdskmgdjv94ynh811n9w0752hh4214adl1qpn576vm"; depends=[BiocManager curl devtools httr withr]; }; - anytime = derive2 { name="anytime"; version="0.3.7"; sha256="0vkckxaq1ga73iszwr4lyf12c1cann1w9lhflz4p3xdgx468fzb9"; depends=[BH Rcpp]; }; + anyflights = derive2 { name="anyflights"; version="0.3.0"; sha256="0q4bg287x60al47m66wn9sd1vmldgll4kyrd6dc9m5lf80mp7hmc"; depends=[curl dplyr glue httr lubridate progress purrr readr roxygen2 stringr usethis vroom]; }; + anytime = derive2 { name="anytime"; version="0.3.8"; sha256="1ac92bjhqjvarrr0ddkgiq3hg5vgzj0m87hh2rsvd5x8136iysck"; depends=[BH Rcpp]; }; aod = derive2 { name="aod"; version="1.3.1"; sha256="1g03ajhs6bid80i83xn3917abhymzgrydqx86wxxpkqga018hb85"; depends=[]; }; aods3 = derive2 { name="aods3"; version="0.4-1.1"; sha256="1kdmgzd5nkzm0awdjls6fc8p9hxsph9ha9k1jxbppdi4i6f0i7rv"; depends=[boot lme4]; }; aof = derive2 { name="aof"; version="0.1.2"; sha256="0552i5wvm04dq8a8y1x36sprc9cbx6k7c3bmsgqxm71dpsxajb0i"; depends=[bcpa]; }; aoos = derive2 { name="aoos"; version="0.5.0"; sha256="0y92vs27i0mkpjdclqzq4j9g1axkymhi3v8xp1v6hazh35yzjkfj"; depends=[magrittr roxygen2]; }; aoristic = derive2 { name="aoristic"; version="1.0.0"; sha256="1qfphg5mh26q832pkh05q50lg60viyiwwcwmsagqb6r64llmysak"; depends=[foreign formattable ggplot2 htmltools lubridate openxlsx plyr]; }; + aos = derive2 { name="aos"; version="0.1.0"; sha256="0nkl7dkqjfp4ahwmn3vs0akx6x2brf0m5gzzzx6pf54j1qwypbhf"; depends=[htmltools jsonlite]; }; apTreeshape = derive2 { name="apTreeshape"; version="1.5-0"; sha256="0mnydk157557pnkjvcadlghn5d8w9kxas4kwz4y4w21xg7z1jrig"; depends=[ape coda cubature pbapply quantreg]; }; apa = derive2 { name="apa"; version="0.3.3"; sha256="1nvhl5fqramsdrkpl1nmgr1vmki5c1lkdi1kkx7ihf0cz35f7c2a"; depends=[dplyr magrittr MBESS purrr rmarkdown stringr tibble]; }; apaTables = derive2 { name="apaTables"; version="2.0.5"; sha256="0h986jqdl65fd33gfa433ik77r6lm9zrq75qfk5r8xsdgzb4wgva"; depends=[boot broom car dplyr tibble]; }; apaText = derive2 { name="apaText"; version="0.1.1"; sha256="1r217k60w027i63nbj24b1rm37m4qf7a6iirc941s945babkxcmb"; depends=[dplyr]; }; apc = derive2 { name="apc"; version="1.3"; sha256="1hgkqkvry9is8kjk2w46k637sig7fdznnc75wbrc8bq1hbrmf785"; depends=[lattice]; }; - apcf = derive2 { name="apcf"; version="0.1.4"; sha256="0hylflzcfb2ziys5fdnwqlcmlzs45mch1plb5p0wf2aq5p8cdlx7"; depends=[Rcpp]; }; + apcf = derive2 { name="apcf"; version="0.1.5"; sha256="1drhzk6v8xirjv3371nay3gz1v6wcklhywrzfqn32ibad7n31ph2"; depends=[Rcpp]; }; apcluster = derive2 { name="apcluster"; version="1.4.8"; sha256="0lzf2jqm56i74wif6x5sw3j0w2qc4sni49zq2fgbl89b7lwkvchj"; depends=[Matrix Rcpp]; }; apdesign = derive2 { name="apdesign"; version="1.0.0"; sha256="041zyd7ih9nnj92jj9vb9ya1ij9lmj1dzx64q74vyiadw1ix5l66"; depends=[Matrix]; }; - ape = derive2 { name="ape"; version="5.3"; sha256="08wbk1kxhs32bmmvqlqanbdg1w235amd35k8m00fngsj9h9xzc08"; depends=[lattice nlme Rcpp]; }; + ape = derive2 { name="ape"; version="5.4-1"; sha256="1r7fwyz30ippcl1ibqiv1xryf44x5crcks5kx19h146ffj76qcgh"; depends=[lattice nlme Rcpp]; }; apercu = derive2 { name="apercu"; version="0.2.4"; sha256="046gf4dzypl6mmq7xqkyrdasq9rsjxzsii7w4nxkbn4c40kh7bf7"; depends=[pls]; }; apex = derive2 { name="apex"; version="1.0.4"; sha256="1ddzbzpnc17yvbl5yfyp0widqlx48qwlh80xcmyzhv045s680rdk"; depends=[adegenet ape phangorn]; }; - apexcharter = derive2 { name="apexcharter"; version="0.1.4"; sha256="1kn0i10wrkb48r3gxxv82mih575csv5695d1l90mh35x45hjgir6"; depends=[ggplot2 htmlwidgets jsonlite magrittr rlang shiny]; }; + apexcharter = derive2 { name="apexcharter"; version="0.1.5"; sha256="0p6my3prqzmvxmnd1dfdfryrk9jy0fndadq9fs69fwkxxr37wvz0"; depends=[ggplot2 htmlwidgets jsonlite magrittr rlang shiny]; }; aphid = derive2 { name="aphid"; version="1.3.3"; sha256="1jqpn7w5sgy4k49qd9ci6yj89s55gzwl5w5ldw793mzpg6if7lfn"; depends=[kmer openssl Rcpp]; }; aplore3 = derive2 { name="aplore3"; version="0.9"; sha256="0af6klscsxvh4amp519b6r41bzysf61p040fj4l5706bbya1arhw"; depends=[]; }; - aplot = derive2 { name="aplot"; version="0.0.4"; sha256="09drrirj7k06gzhda36whpl21b7ca4grsxqlayaxrmilvapmf795"; depends=[ggplot2 magrittr patchwork]; }; + aplot = derive2 { name="aplot"; version="0.0.5"; sha256="19z8r1l54k4rjs4pwm0aldg25m973708bxjymkhsa9q832vfkm6y"; depends=[ggplot2 magrittr patchwork]; }; aplpack = derive2 { name="aplpack"; version="1.3.3"; sha256="010saim43d3hr83ksi916846rh6qfbb0gvhsf5jbdx95m4bai9g3"; depends=[]; }; apmsWAPP = derive2 { name="apmsWAPP"; version="1.0"; sha256="1azgif06dsbadwlvv9nqs8vwixp6balrrbpj62khzmv1jvqr4072"; depends=[aroma_light Biobase DESeq edgeR genefilter gtools multtest seqinr]; }; apng = derive2 { name="apng"; version="1.0"; sha256="13hvr1w566anrhdicaqwqjgfq2lk3zkn5gcfgy8zazjnad4vy07y"; depends=[bitops]; }; apollo = derive2 { name="apollo"; version="0.1.0"; sha256="0i80js5gxz3rj6977iwnm7pi9qgq2iz4h83nz8301ra94g7kjv40"; depends=[coda Deriv maxLik mnormt mvtnorm numDeriv randtoolbox Rcpp RcppArmadillo RcppEigen RSGHB sandwich]; }; apple = derive2 { name="apple"; version="0.3"; sha256="194z2f6hwdjjxdkjwlmfhpfp26p9yp3gparklhdbb6zlb4a9nnhz"; depends=[MASS]; }; + applicable = derive2 { name="applicable"; version="0.0.1.2"; sha256="0yzfk4ajdx4l3xivf6v9vn7fqvzfma4842cvjixrng83p2v25sdq"; depends=[dplyr ggplot2 glue hardhat Matrix proxyC purrr rlang tibble tidyr tidyselect]; }; appnn = derive2 { name="appnn"; version="1.0-0"; sha256="0wkpr6lcd68wlzk6n622ab7sd99l837073czn4k56hw8bw9v68j3"; depends=[]; }; approximator = derive2 { name="approximator"; version="1.2-7"; sha256="0smqjdla9mvzy164nsb0pw0sgal3w2wnyhqidp74h0smyczrr1zw"; depends=[emulator mvtnorm]; }; approxmatch = derive2 { name="approxmatch"; version="2.0"; sha256="1n6v1h4zf1nf8j1a5d0h95v6q8dff39v9061i7zzi9ci3lw04748"; depends=[]; }; aprean3 = derive2 { name="aprean3"; version="1.0.1"; sha256="17rnq02sncl6rzwyln10200s43b8z1s2j0kdi9kgcb6qr51v12rv"; depends=[]; }; apricom = derive2 { name="apricom"; version="1.0.0"; sha256="1gyd1yln14cn0iswj7sjs4hav6j6d4f3ncps4gqbci5fwha5blcr"; depends=[logistf penalized rms shrink]; }; aprof = derive2 { name="aprof"; version="0.4.1"; sha256="14qclp88j4ygd4vrxxpgy2s9939wcajjsqycdzpvn64ws29sdpvh"; depends=[testthat]; }; - apsimr = derive2 { name="apsimr"; version="1.2"; sha256="14vhsm6am2c2q2sgabnhxr0lgldifss0anjpisrhjqk04njllviy"; depends=[ggplot2 lubridate MASS mgcv reshape2 XML]; }; + apsimx = derive2 { name="apsimx"; version="1.946"; sha256="1xwa0yhjzdgyrbc3yc4myjfy369gj0ll8y1nml7lfylc57cjdhx3"; depends=[DBI jsonlite knitr RSQLite xml2]; }; apsrtable = derive2 { name="apsrtable"; version="0.8-8"; sha256="1qmm89npjgqij0bh6p393wywl837lfsshp2mv9b5izh1sg2qfwvw"; depends=[]; }; - apt = derive2 { name="apt"; version="2.5"; sha256="1y18bqnnxy5p0xx9gbfrnrzq3nlhw3psl5zlibrw6lfhb8lxd4mk"; depends=[car copula erer gWidgets urca]; }; - apyramid = derive2 { name="apyramid"; version="0.1.1"; sha256="0lqmk2cm4dflzq1f67mfdxpq9slfz2k9fnsvhrwb5dj5kw2az3i6"; depends=[dplyr forcats ggplot2 glue rlang scales tidyselect]; }; + apt = derive2 { name="apt"; version="3.0"; sha256="14njvpf6q34nffm3r9gqcszlabzbydsxqj0ln9nk4mv59izp8sqm"; depends=[car erer urca]; }; + apyramid = derive2 { name="apyramid"; version="0.1.2"; sha256="0ws6dfd6v3p9rhpmf06786yl2gaw1h2n1d76a054iap8bvgyahzw"; depends=[dplyr forcats ggplot2 glue rlang scales tidyselect]; }; aqp = derive2 { name="aqp"; version="1.19"; sha256="1z5qbzhsn79xz17i53hy48xnwf64k5cc24jxwvysyv8p2ylrir0i"; depends=[cluster digest lattice MASS plotrix plyr RColorBrewer reshape scales sp stringr]; }; - aqr = derive2 { name="aqr"; version="0.4"; sha256="04frgil3nbxsww66r9x0c6f308pzqr1970prp20bdv9qm3ym5axw"; depends=[RCurl xts]; }; ar_matrix = derive2 { name="ar.matrix"; version="0.1.0"; sha256="1d531hkl50szfa1q0zbp8dp1a9jli63kwvxjgc9n0ar279y47qdz"; depends=[MASS Matrix sp sparseMVN]; }; arabicStemR = derive2 { name="arabicStemR"; version="1.2"; sha256="1vflynbi7aln7x2p4jg9gsvfrxn4v6qkb4wbrzxmj561lqy9fcay"; depends=[]; }; arc = derive2 { name="arc"; version="1.2"; sha256="1advs0aqxh84c5n9akww8cdafh7npgaibrb42wncwhv9nfi7wy1v"; depends=[arules discretization Matrix R_utils]; }; @@ -5165,10 +5296,14 @@ in with self; { archiDART = derive2 { name="archiDART"; version="3.3"; sha256="01fmyp3f26v5rdgi00qyn139fgq55yxz5nhx223hg78qwrrbjvpw"; depends=[geometry gtools rgl sp TDA XML]; }; archivist = derive2 { name="archivist"; version="2.3.4"; sha256="1i11hrcq1910jgd6diw6h3sxx624v57zjianm49pqvb2dvd0b8y7"; depends=[DBI digest flock httr lubridate magrittr RCurl RSQLite]; }; archivist_github = derive2 { name="archivist.github"; version="0.2.6"; sha256="092fzi505vx9xbk41m86d0isxna42iflp7q2kjiqa6z1ccvim2yx"; depends=[archivist digest git2r httr jsonlite]; }; - areal = derive2 { name="areal"; version="0.1.5"; sha256="01fh4al7hz9hxnvkp4my8937czhr8jnxyvpnj4gmhsm4alv25yfc"; depends=[dplyr glue purrr rlang sf]; }; + arcos = derive2 { name="arcos"; version="1.1"; sha256="1zhpbydn3d2fyiy3vfvpm8cr6gvyja8mnzkwdcyjln1vr8kyz5j1"; depends=[dplyr jsonlite magrittr stringr urltools vroom]; }; + areal = derive2 { name="areal"; version="0.1.7"; sha256="1kdnf7c21g51mhf428nl5jl96cfrk5iw1npzp5rv5ys3jp2mvhhi"; depends=[dplyr glue purrr rlang sf]; }; + arealDB = derive2 { name="arealDB"; version="0.3.4"; sha256="1235j1w2gsv22k6a6zxanxvxx6fj1sifc5nkial883mpgvkbz789"; depends=[checkmate dplyr magrittr readr rlang sf stringr tabshiftr tibble tidyr tidyselect]; }; areaplot = derive2 { name="areaplot"; version="1.2-1"; sha256="1bmr092pgflgyss50xy1hs5xjl57i2wmfg7qa513sh120fi2mina"; depends=[]; }; arena2r = derive2 { name="arena2r"; version="1.0.0"; sha256="14zjpglp389pldi436935fz6mgi4jdgfii1m035nsvihrms9gqkh"; depends=[dplyr ggplot2 magrittr purrr rlang shiny shinyBS shinydashboard shinyjs tidyr]; }; + arenar = derive2 { name="arenar"; version="0.1.8"; sha256="12nyslzcbxr2j9dnc9fpw4fi7dcmbaaand7c9m7qcy9cqvms2dim"; depends=[auditor DALEX gistr iBreakDown ingredients jsonlite plumber]; }; arfima = derive2 { name="arfima"; version="1.7-0"; sha256="0kj8qv6m2fcdw8x735n8fk9cynm0jxi5v9hif0f879sxk6qkxb9y"; depends=[ltsa]; }; + argo = derive2 { name="argo"; version="2.0.2"; sha256="08ay5rrdra74x97ff4333w6lib92indjh774rsbn24mzc2n140ji"; depends=[boot glmnet Matrix XML xtable xts zoo]; }; argon2 = derive2 { name="argon2"; version="0.2-0"; sha256="0kqn06rpb39jlzizjlnc5c44mfic8llrshxn7ljgmyj35lbqwxqh"; depends=[]; }; argonDash = derive2 { name="argonDash"; version="0.2.0"; sha256="1wykr7y5375g1nb18ynybccxmd948xrr0gdwxxqsfjf782vlgd2d"; depends=[argonR htmltools shiny]; }; argonR = derive2 { name="argonR"; version="0.2.0"; sha256="15hlvansqnky9bnq4r7xza3hb1hzylmhz8117wxz9lxa1wiky2is"; depends=[htmltools rstudioapi]; }; @@ -5176,10 +5311,11 @@ in with self; { argparse = derive2 { name="argparse"; version="2.0.1"; sha256="1as7h6z7kzgv0fqzpnp76qbm96b4jcd37azd58b7rz0l1n94764l"; depends=[findpython jsonlite R6]; }; argparser = derive2 { name="argparser"; version="0.6"; sha256="1pxiz9jlhlnpzqn1lz349r07i7glw708w202x6dlnxp112fg7k4x"; depends=[]; }; ari = derive2 { name="ari"; version="0.3.5"; sha256="03w99c918jp23d0kl26vx4m7xjicpgwl5rhn9d0fsm4kvv7j87li"; depends=[hms progress purrr rmarkdown rvest text2speech tuneR webshot xml2]; }; - aricode = derive2 { name="aricode"; version="0.1.2"; sha256="0w5ap0lhp9x67qvz3z80y49311g6h24x11yn8ziv75s3kaxy2wvz"; depends=[Matrix Rcpp]; }; + ariExtra = derive2 { name="ariExtra"; version="0.2.11"; sha256="1gl2r0qksfisv7h27x83b665h7016c6rlff04mgj8iwp29144lch"; depends=[ari docxtractr httr jsonlite magrittr mime pdftools rmarkdown rvest text2speech tuneR xml2 yaml]; }; + aricode = derive2 { name="aricode"; version="1.0.0"; sha256="0i6vynhby4sjiaxscjrgrb5d96f307yjr8r9ff1fhv264lydcqwl"; depends=[Matrix Rcpp]; }; arkdb = derive2 { name="arkdb"; version="0.0.5"; sha256="00ih2in6q0kismpc5jc8w3609nxjkmybx8i19cjlbr93y2zjm29i"; depends=[DBI progress]; }; arkhe = derive2 { name="arkhe"; version="0.2.2"; sha256="0wfi6wgarjfkni4l1wy863i1cbqsckcw3ar357rkcwz3kks47f6p"; depends=[]; }; - arm = derive2 { name="arm"; version="1.10-1"; sha256="0vvp90jygajd6ydky57z66wqjq9msfbl88irj5jbsray574mh4bg"; depends=[abind coda lme4 MASS Matrix nlme]; }; + arm = derive2 { name="arm"; version="1.11-2"; sha256="1grb27vayr2vhyalzfqbhx6p278r7c3l4pzi5nrz3dmnyqrbx1c3"; depends=[abind coda Hmisc lme4 MASS Matrix nlme]; }; armada = derive2 { name="armada"; version="0.1.0"; sha256="191iwf5y1za3wssawkyi9jcingfqqxcvv88hglpw6j7y3x5f47hf"; depends=[anapuce circlize ClustOfVar ComplexHeatmap doParallel FAMT glmnet impute mvtnorm qvalue VSURF]; }; armspp = derive2 { name="armspp"; version="0.0.2"; sha256="098c59hdzr4ly8sx72xkcbjmiz5y65id1slsscwjji1yssb23lqq"; depends=[Rcpp]; }; arnie = derive2 { name="arnie"; version="0.1.2"; sha256="14xkgyfn9zvkbgram15w7qzqc5pl1a8ig66cif7a79najrgd914r"; depends=[]; }; @@ -5191,54 +5327,57 @@ in with self; { arrApply = derive2 { name="arrApply"; version="2.1"; sha256="0qy7iwi580rrf3sycsbv6qgxsqcdy9pdbnkdrx81j68qni9iw737"; depends=[Rcpp RcppArmadillo]; }; arrangements = derive2 { name="arrangements"; version="1.1.8"; sha256="03dzvahy8mwp6w1smnbp83zk8w8pfkmsfd1f68bd8jjvdb5lrz71"; depends=[gmp R6]; }; arrayhelpers = derive2 { name="arrayhelpers"; version="1.1-0"; sha256="02rl530qxi1idiqpmzg5wr9vl5c7phizhpj64k5pn8xq9zfxbpaz"; depends=[svUnit]; }; - arrow = derive2 { name="arrow"; version="0.17.0"; sha256="0sacpxbz68797sf9irrjfchcfs1m4dbidnvb1z7gb4xiyin0npz8"; depends=[assertthat bit64 purrr R6 Rcpp rlang tidyselect vctrs]; }; + arrow = derive2 { name="arrow"; version="1.0.0"; sha256="1j0n5sapgwim8qk4vrdy9gw4zrsd11a51c50pllk33xnd9p30v3k"; depends=[assertthat bit64 purrr R6 Rcpp rlang tidyselect vctrs]; }; ars = derive2 { name="ars"; version="0.6"; sha256="0zs1rk3i7pc9wcvxrvjcls194mfbvmkz7cb6pwd1cm3fzjwsyxsp"; depends=[]; }; arse = derive2 { name="arse"; version="1.0.0"; sha256="0ssaalc058m09gfcr1n0s729rx2plia3zkhlynj67drclyvhyb0i"; depends=[dplyr pracma]; }; - arsenal = derive2 { name="arsenal"; version="3.4.0"; sha256="090q0kjpcjdxa6r22pb7wzhvgcdq41khh1af7pqgg1rvn2d97x4n"; depends=[knitr]; }; + arsenal = derive2 { name="arsenal"; version="3.5.0"; sha256="0avi434wkk3w7axd89a4jwsbb11fi0239mkkla6zasnjwbqgjim0"; depends=[knitr]; }; artfima = derive2 { name="artfima"; version="1.5"; sha256="1nqsq9fsqk9kag9n7i2r9yvf578nkdfrkkv7qy8650prka0jca2p"; depends=[gsl ltsa]; }; - arules = derive2 { name="arules"; version="1.6-5"; sha256="0bcvfn8lvcv74vv9z3kgg7yq5hm7wjqhmzadi55cbm8zxd76g84v"; depends=[Matrix]; }; + arules = derive2 { name="arules"; version="1.6-6"; sha256="1pk3jjizn2m5rwi7qkdkbq9f07acgpy0qdzzqmx0agg47cwahlkm"; depends=[Matrix]; }; arulesCBA = derive2 { name="arulesCBA"; version="1.2.0"; sha256="1d72lrfbyr2g7n6r04vyaqs3pvs3jhkfr4yfgn2fj690q3ff0qr3"; depends=[arules discretization glmnet Matrix]; }; - arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-5"; sha256="1q4sx6c9637kc927d0ylmrh29cmn4mv5jxxpl09yaclzfihjlk9a"; depends=[arules rJava]; }; - arulesSequences = derive2 { name="arulesSequences"; version="0.2-24"; sha256="0sgysrvmdsr6l0661llrmsnnn397n2niv0bhlm0i31ak0fwh1ljz"; depends=[arules]; }; + arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-7"; sha256="1id1zhn9wb99qcq5yajn1safmmsw113f3xlpmcy3zwnapafcbh8a"; depends=[arules rJava]; }; + arulesSequences = derive2 { name="arulesSequences"; version="0.2-25"; sha256="0vd5fgi1b45kgfm5yi9ygaxm0sb8qarz5lsknwh5gla3h0k7l66b"; depends=[arules]; }; arulesViz = derive2 { name="arulesViz"; version="1.3-3"; sha256="1c51l4hqai07qx20lbdvffxw9kx0vkgbccw7b9wz1h2n5ma90c8y"; depends=[arules colorspace DT igraph plotly scatterplot3d seriation vcd visNetwork]; }; asVPC = derive2 { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; }; asaur = derive2 { name="asaur"; version="0.50"; sha256="0c1rgic76w3i2xhna7i52lyc0p01s5b1mxyn55gqw6i19v9mq0b3"; depends=[]; }; - asbio = derive2 { name="asbio"; version="1.6-3"; sha256="15b3018wyf41iajy92a0nzhhz0qfawi05zy5my1hq3l5mrlkidh1"; depends=[deSolve gWidgets gWidgetstcltk lattice multcompView mvtnorm pixmap plotrix scatterplot3d tkrplot]; }; + asbio = derive2 { name="asbio"; version="1.6-5"; sha256="0ivsn0ilj4f0mlc9cq5lw89xq6n2wxcp7xxr6cb04zfi4hjp4b0r"; depends=[combinat deSolve gWidgets2 gWidgets2tcltk lattice multcompView mvtnorm pixmap plotrix scatterplot3d tkrplot]; }; + ascii = derive2 { name="ascii"; version="2.3"; sha256="0aqkmbp63vf5339r5yn2r5s6h4ghnh06s663j9h570z2jllbv9jk"; depends=[codetools digest survival]; }; asciiSetupReader = derive2 { name="asciiSetupReader"; version="2.3.1"; sha256="031x6kvzpfh2falzg2qgch2czj74a4mskl8cn83y9rs0shswvmhx"; depends=[data_table haven miniUI readr rstudioapi shiny stringr vroom zoo]; }; asciicast = derive2 { name="asciicast"; version="1.0.0"; sha256="0vga88cq2hzi0bwq43n1yz5cm8kaag9xpg8v73gj06fb93lhha9x"; depends=[curl jsonlite processx tibble uuid V8]; }; + asciichartr = derive2 { name="asciichartr"; version="0.1.0"; sha256="1b73bbysnxy3x3gwhm80xry45m18yh716wrc93v1awk3c1p2cv3m"; depends=[]; }; asciiruler = derive2 { name="asciiruler"; version="0.2"; sha256="0xhkbsy9dypk09avazgxczyfkh3rhdxhwci688dw1lxnhxv1hj24"; depends=[stringr]; }; asd = derive2 { name="asd"; version="2.2"; sha256="0p3r4qjam3sl3rpcilb0pgx4xx3ly71xqnvkv31vzjs885lgxz4l"; depends=[mvtnorm]; }; asdreader = derive2 { name="asdreader"; version="0.1-3"; sha256="15a922aw0v5w4hrha03xifx8cpifcc773gambgwqq6i5nz08ya26"; depends=[]; }; ash = derive2 { name="ash"; version="1.0-15"; sha256="1ay2a2agdmiz7zzvn26mli0x0iwk09g5pp4yy1r23knhkp1pn2lb"; depends=[]; }; ashr = derive2 { name="ashr"; version="2.2-47"; sha256="1rqb5j30ylaf1h4l66x4jxyn5inrvhc42d90qd5mgkxsq0ghdlr4"; depends=[etrunct invgamma Matrix mixsqp Rcpp SQUAREM truncnorm]; }; - asht = derive2 { name="asht"; version="0.9.4"; sha256="1aq384vgf26ig3isyp99z09glcjhl2qd43kp8qdcwk75dcrmxd7z"; depends=[bpcp coin exact2x2 exactci perm ssanv]; }; + asht = derive2 { name="asht"; version="0.9.6"; sha256="0zi0v7v7ivis5v6a8m1vh21c1wymshxcb948amgrq1j6svm505sf"; depends=[bpcp coin exact2x2 exactci perm ssanv]; }; askpass = derive2 { name="askpass"; version="1.1"; sha256="07q0ik8jzk44vpwh48rr3fnpd7dzsdhjjsl4l850rffv3dyq4h6v"; depends=[sys]; }; + aslib = derive2 { name="aslib"; version="0.1.1"; sha256="0vzrxxj298skgv6gn9cbhr75ywmh5amsk9m02zncl20jcydf9j91"; depends=[BatchExperiments BatchJobs BBmisc checkmate corrplot ggplot2 llama mlr parallelMap ParamHelpers plyr reshape2 RWeka stringr yaml]; }; asnipe = derive2 { name="asnipe"; version="1.1.12"; sha256="01k2qr9vpazj4mhz4zpngav31d69qr73i8fc59x8gdbi3ipic7rs"; depends=[MASS Matrix]; }; aspace = derive2 { name="aspace"; version="3.2"; sha256="1g51mrzb6amafky2kg2mx63g6n327f505ndhna6s488xlsr1sl49"; depends=[Hmisc shapefiles splancs]; }; aspect = derive2 { name="aspect"; version="1.0-5"; sha256="0pbc0daxw20xcbgqyyd5gbs9kmbaf2dq8ajllx0mnfwdcak9jfgj"; depends=[]; }; aspi = derive2 { name="aspi"; version="0.2.0"; sha256="0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"; depends=[]; }; - asremlPlus = derive2 { name="asremlPlus"; version="4.2-18"; sha256="1v83ahb7rndybfzaw6gnv0m4fvp8nv8gsrsasa8x59n6pd5jkjd9"; depends=[dae doParallel dplyr foreach ggplot2 plyr RColorBrewer reshape stringr]; }; + asremlPlus = derive2 { name="asremlPlus"; version="4.2-21"; sha256="1dcrh7fxw338h82pccl28hwv9cq0pcy9fs6b9snr4fxlgs146jnh"; depends=[dae doParallel dplyr foreach ggplot2 plyr RColorBrewer reshape stringr]; }; assertable = derive2 { name="assertable"; version="0.2.7"; sha256="1npks9rcrnchmd0silq6qrvqkmdkp9fwjkyyvvp1lqjclyxk6vkk"; depends=[data_table]; }; - assertive = derive2 { name="assertive"; version="0.3-5"; sha256="0blbbhlxcb5ffdxqxi62xs33ljiawh6s22a0pyvbbh79jf46rzr3"; depends=[assertive_base assertive_code assertive_data assertive_data_uk assertive_data_us assertive_datetimes assertive_files assertive_matrices assertive_models assertive_numbers assertive_properties assertive_reflection assertive_sets assertive_strings assertive_types knitr]; }; + assertive = derive2 { name="assertive"; version="0.3-6"; sha256="02palil82idqhhshcdjsfsja9qkqnd0dczqzj5gbccy4hfg1c0y4"; depends=[assertive_base assertive_code assertive_data assertive_data_uk assertive_data_us assertive_datetimes assertive_files assertive_matrices assertive_models assertive_numbers assertive_properties assertive_reflection assertive_sets assertive_strings assertive_types knitr]; }; assertive_base = derive2 { name="assertive.base"; version="0.0-7"; sha256="1xs3ysvj0z57c58jw57pckq2rynia6ks4rmjmc02alczhk54wbgh"; depends=[]; }; assertive_code = derive2 { name="assertive.code"; version="0.0-3"; sha256="1qhbp668zfvhqs8avkhg9amp4zyazz6dsy4fc6kpdmw3sv8yi07g"; depends=[assertive_base assertive_properties assertive_types]; }; assertive_data = derive2 { name="assertive.data"; version="0.0-3"; sha256="00cvg2g36mdl8plrzx40m63qd55742mddqrchwy9n3c7mm4gn02s"; depends=[assertive_base assertive_strings]; }; assertive_data_uk = derive2 { name="assertive.data.uk"; version="0.0-2"; sha256="1fzjvhwp7mwkqqix29khvs6zcrc82n6j4czvzzb473vyjyvdlj5b"; depends=[assertive_base assertive_strings]; }; assertive_data_us = derive2 { name="assertive.data.us"; version="0.0-2"; sha256="1bgspn0sccmp9z7s7djvdvprgxlyc5vrxznp4zfjb79kwvgn83hq"; depends=[assertive_base assertive_strings]; }; - assertive_datetimes = derive2 { name="assertive.datetimes"; version="0.0-2"; sha256="00a98fx8p3pr3ckayh8wmxmm4rz01s67wah9697m92yci6pv3m78"; depends=[assertive_base assertive_types]; }; + assertive_datetimes = derive2 { name="assertive.datetimes"; version="0.0-3"; sha256="151d05z8n6dpl44pqsa1jfi0ijbigr3zfc43xlw53nd8ymi22kh1"; depends=[assertive_base assertive_types]; }; assertive_files = derive2 { name="assertive.files"; version="0.0-2"; sha256="02pfz8j5vwcj5kl6zca46894li7lxwnlrr29j922f14ay6kdssmy"; depends=[assertive_base assertive_numbers]; }; assertive_matrices = derive2 { name="assertive.matrices"; version="0.0-2"; sha256="16sykzcndv6y2d43x6v9n7m95kv76364h39kh10w4z0xw6ksfqil"; depends=[assertive_base]; }; assertive_models = derive2 { name="assertive.models"; version="0.0-2"; sha256="0bn4j4v5qvb2d672cgri61p8d9v258pmz35y3lvm6b9mdxwdi9mr"; depends=[assertive_base]; }; assertive_numbers = derive2 { name="assertive.numbers"; version="0.0-2"; sha256="0jc3ss64j4m7bjydhagwwmka5n7c72vpw4kfcch0m5jvkq5qrqds"; depends=[assertive_base]; }; assertive_properties = derive2 { name="assertive.properties"; version="0.0-4"; sha256="0sqs54acs9qk9kvm32rxzfbzxz1l8mjahpfnw7r30z2brgz661jw"; depends=[assertive_base]; }; - assertive_reflection = derive2 { name="assertive.reflection"; version="0.0-4"; sha256="19zmsbn00crfqm0kwd9ys5gv87xs3gi6wmlikrz9xiwzm7hp4dhj"; depends=[assertive_base]; }; + assertive_reflection = derive2 { name="assertive.reflection"; version="0.0-5"; sha256="1g9lpwzy6r2xmyi2mlbcccnfgyzhzbmx5bsicf3vkffxrlkrpjn2"; depends=[assertive_base]; }; assertive_sets = derive2 { name="assertive.sets"; version="0.0-3"; sha256="1cqvh2syvh5b6d85h601zjmsdbbf3h8q98ids4dfl4frdshpasc7"; depends=[assertive_base]; }; assertive_strings = derive2 { name="assertive.strings"; version="0.0-3"; sha256="0n6jrk88670g4ym0r8ii40a08a90z1xadj8wcryk8h0nl04dchfm"; depends=[assertive_base assertive_types stringi]; }; assertive_types = derive2 { name="assertive.types"; version="0.0-3"; sha256="0zxq1jfrzgw95ll7alvm0xnk7aihjdksngq4ya2whyvfjbmv4vdb"; depends=[assertive_base assertive_properties codetools]; }; assertr = derive2 { name="assertr"; version="2.7"; sha256="1x868pd4dac1c7b1q5390wqh2f6s50km8nqcpim3nxcj2l4qkqdb"; depends=[dplyr MASS rlang]; }; assertthat = derive2 { name="assertthat"; version="0.2.1"; sha256="17wy5bdfzg73sg2clisg1k3zyn1adkj59x56m5nwia2k8z67zkw5"; depends=[]; }; - assignPOP = derive2 { name="assignPOP"; version="1.1.9"; sha256="1cbk2l827mfi4fi1jai0lzbcj2wvrzd3kw4frmqn4anx6nbcr0qf"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 stringr tree]; }; - assignR = derive2 { name="assignR"; version="1.2.0"; sha256="0p722j4nclbpvjrp0hrgz8c1cijlk31sfjlf84wz326qp12dy3af"; depends=[maptools raster rgdal sp]; }; + assignPOP = derive2 { name="assignPOP"; version="1.2.0"; sha256="1qv600fbzpfi49sx72avcc0y9xnyppbhlchl32xgk3jcwyfk3pxp"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 stringr tree]; }; + assignR = derive2 { name="assignR"; version="1.2.1"; sha256="0xgqim8c5hi34dl76lrmj9nikqcn88wfcjs643a2dx06cmkkj1vi"; depends=[maptools raster rgdal sp]; }; assist = derive2 { name="assist"; version="3.1.6"; sha256="13r029z32f2xcspafx01jkgmabbjcvnp8wg1wx1liwxh3mf2zalg"; depends=[lattice nlme]; }; assocInd = derive2 { name="assocInd"; version="1.0.1"; sha256="16yzgvlqbapjhvzm5nw8vfrhh8mp9llnhck4bpgmszyrh93z1ha5"; depends=[]; }; assortnet = derive2 { name="assortnet"; version="0.12"; sha256="1vyzrb8vsi9pcdn6jd83k77bg0q2a3dwdvlnmxnshqiif2pakb8m"; depends=[]; }; @@ -5248,39 +5387,44 @@ in with self; { astrochron = derive2 { name="astrochron"; version="0.9"; sha256="14bzyp2927rklx9lfd3bikf5ck8irvr3s7266mh2245lyy79g9xi"; depends=[doParallel fields foreach IDPmisc iterators multitaper]; }; astrodatR = derive2 { name="astrodatR"; version="0.1"; sha256="00689px4znwmlp6qbj6z2a51b7ylx1yrrjpv6zjkvrwpv6lyj9fw"; depends=[]; }; astrolibR = derive2 { name="astrolibR"; version="0.1"; sha256="0gkgry5aiz29grp9vdq9zgg6ss47ql08nwcmz1pfvd0g0h9h75l8"; depends=[]; }; - astsa = derive2 { name="astsa"; version="1.9"; sha256="0s5d94ra8fiy0c5h8n6mk7nk9k3cmcdirafb8rcps2aqr3yh4k4d"; depends=[]; }; + astsa = derive2 { name="astsa"; version="1.10"; sha256="0j6106zn9jqmygfw34vjz123ag7l10s84br4z5rqjwwy219ak3b7"; depends=[]; }; asus = derive2 { name="asus"; version="1.0.0"; sha256="16hp8xajb631a5amm1cvhzq8z4cwh1vjiavv3n11fzpxyskhmfrb"; depends=[rwt wavethresh]; }; asymLD = derive2 { name="asymLD"; version="0.1"; sha256="1q05pxwn6arpalspgf2m0cym4ivnwyv94i58k9kaihd37kvm5lgc"; depends=[]; }; asymmetry = derive2 { name="asymmetry"; version="2.0.2"; sha256="0x5yzlf804mhwfr9244b04vnixiyh5d8vmqrfffgid3dijg2zszm"; depends=[gplots smacof]; }; + asymmetry_measures = derive2 { name="asymmetry.measures"; version="0.2"; sha256="039afqmdir200aijln9q0g3rkahkxqahw6yz5mnw62jsslr9xskb"; depends=[gamlss_dist skewt sn]; }; asympTest = derive2 { name="asympTest"; version="0.1.4"; sha256="02l07psiy1888zx86j2r1l5lznz47wdmzbh39pd2nbj8r9i80szr"; depends=[]; }; asypow = derive2 { name="asypow"; version="2015.6.25"; sha256="0il38djkmw5ka7czpalmhq6yycx7flpdpgbd7p5nx52rsjdv49mj"; depends=[]; }; - atable = derive2 { name="atable"; version="0.1.6"; sha256="17i3vhfayi8h12c4y1spagb9wcq1vsrh7miz20rbinpi9x9671nj"; depends=[DescTools doBy effsize Hmisc plyr reshape2 settings]; }; + ata = derive2 { name="ata"; version="1.1.0"; sha256="1v14r9g46pi7fjnf59dh8ljpdbsqxhrwr0zryxxza2y0qrxh0902"; depends=[lpSolve]; }; + atable = derive2 { name="atable"; version="0.1.8"; sha256="1l4cfgpkjd33xxxmhbqiy901g1jl4bcs39dk6wvy02dihv6m1id6"; depends=[DescTools doBy effsize Hmisc plyr reshape2 settings]; }; atlas = derive2 { name="atlas"; version="1.0.0"; sha256="02wm22j40llmdi6z3rzgbc5fpkzmjfq0xar33bypvj1dx1zxygnd"; depends=[httr testthat]; }; atmcmc = derive2 { name="atmcmc"; version="1.0"; sha256="05k69b5wlysz3kh0yiqvshgvr0nyz34zkvn6bjs30cwz7s9j21pn"; depends=[]; }; atmopt = derive2 { name="atmopt"; version="0.1.0"; sha256="1h79ngq1236gz4w29fs3nj46a3m1x8a28z3xnhc6wn3a46cf8zzi"; depends=[DoE_base gtools hierNet]; }; atsd = derive2 { name="atsd"; version="1.2.0"; sha256="0jan8r5f2r3l2xpdf9rrv4smkr2l645rfdgdfjb1xa54jd3pqvqs"; depends=[httr RCurl]; }; attachment = derive2 { name="attachment"; version="0.1.0"; sha256="0j3zm0ibf1iv67jy4mq1fzckgbxhxyx74frplsl2np0fbdgsxdz6"; depends=[desc glue knitr magrittr rmarkdown roxygen2 stringr]; }; - attempt = derive2 { name="attempt"; version="0.3.0"; sha256="1q0r4r0hirw2kxsvcq5rqkmbxzi7fa6fxaqi6rmzwiz25025iv71"; depends=[rlang]; }; + attempt = derive2 { name="attempt"; version="0.3.1"; sha256="1ylgg7jcp8wqmxgf1mydnvh26k0mr8jyjla4hw06730r40yrs58m"; depends=[rlang]; }; attenuation = derive2 { name="attenuation"; version="1.0.0"; sha256="0ys4psvkvimmym4qj9cmhq8y7x10kv0x6bsvpjkrsc3l8p2g3474"; depends=[]; }; atus = derive2 { name="atus"; version="0.2"; sha256="1i67rx8p5v4shgbfcym4lbnlw55xx7w2fdzhgsgjjyfpwbpm7h4h"; depends=[]; }; auRoc = derive2 { name="auRoc"; version="0.2-1"; sha256="152jdvzigcplii5amj0mnral3g2jyy3rfsc745mx36sspw1396yx"; depends=[coda MBESS ProbYX rjags]; }; aucm = derive2 { name="aucm"; version="2019.12-1"; sha256="1vjb5jiq2iz6c8nhfcbqg21nms7nf485xlrgd7mdkbzvqxxl43h6"; depends=[kyotil]; }; auctestr = derive2 { name="auctestr"; version="1.0.0"; sha256="15b1x0c9yhl91gir7jmivp8vxzc8q7wvb0mgam9454avc6l29x4y"; depends=[dplyr tidyr]; }; + auctionr = derive2 { name="auctionr"; version="0.1.0"; sha256="0kfx81irqr9mfp4n86z7q5nclcci8vlpvq9zid7miyw3rci7dfvi"; depends=[numDeriv]; }; audio = derive2 { name="audio"; version="0.1-7"; sha256="0x4wcl8nlymmzhsdd255ybxdwnshksmr92y6drcajnij8mx3kq2j"; depends=[]; }; audiolyzR = derive2 { name="audiolyzR"; version="0.4-9"; sha256="09jsrjy15vcn6da0kgk06ghayyrf3s853gqv8qdawg745ky2hbgi"; depends=[hexbin plotrix RJSONIO]; }; + audiometry = derive2 { name="audiometry"; version="0.2.0"; sha256="1qgvzbq69xb9c8y7d4dxgnhppa485c4sfg0nb6gljd1vwj3y7iyf"; depends=[ggplot2]; }; audit = derive2 { name="audit"; version="0.1-1"; sha256="0hrcdcwda5c0snskrychiyfjcbnymkcl2x43bapb6inw9y8989qv"; depends=[]; }; - auditor = derive2 { name="auditor"; version="1.2.0"; sha256="14swypvjfkd8qi34dsv2sg2fj0ls4xz42vy4csd2qxj0zwi3rlap"; depends=[DALEX ggplot2 ggrepel gridExtra hnp scales]; }; + auditor = derive2 { name="auditor"; version="1.3.0"; sha256="1h6k15z3xf8isqqarbah6mz3nabjva4dbrbnf1fjw34idj804jbw"; depends=[DALEX ggplot2 ggrepel gridExtra hnp scales]; }; augSIMEX = derive2 { name="augSIMEX"; version="3.7.4"; sha256="0620yxqi160ar91shl5macn890zpc60c9nqy4w8i6m7sskv6gl3z"; depends=[Formula MASS nleqslv Rcpp]; }; - augmentedRCBD = derive2 { name="augmentedRCBD"; version="0.1.2"; sha256="1m5iwsy6a580k8b2ph186w2aa9nqy1551mwr4zx4cwyh06m8hrq3"; depends=[dplyr emmeans flextable ggplot2 moments multcomp multcompView officer Rdpack reshape2 stringi]; }; + augmentedRCBD = derive2 { name="augmentedRCBD"; version="0.1.3"; sha256="10xp33901i9xczn5gg6pwbcdp4nqbnqhixj4cjhwj8rfn0kjkq7l"; depends=[dplyr emmeans flextable ggplot2 moments multcomp multcompView officer Rdpack reshape2 stringi]; }; auk = derive2 { name="auk"; version="0.4.1"; sha256="0xrxl8qzmc0dnjn7s32wwrdv1z7v7a4wfpz4vrradfn84vxway30"; depends=[assertthat countrycode dplyr httr magrittr rlang stringi stringr tidyr]; }; aurelius = derive2 { name="aurelius"; version="0.8.4"; sha256="00bpf9sggvnajpmg3zsdgfjinkb6wbrcf1ris7qfhh1rp5rz4m4m"; depends=[gbm glmnet jsonlite]; }; auth0 = derive2 { name="auth0"; version="0.2.1"; sha256="077nqh28q3b9jb25fy0157l06zpx3x0rg4z5dz2dqsh88xy4nhqj"; depends=[htmltools httr shiny shinyjs yaml]; }; auto_pca = derive2 { name="auto.pca"; version="0.3"; sha256="01m2ldpcxzj7fhgmr9wp4ha3gqdyh7l5bkrnw83smcbq5229hsyy"; depends=[plyr psych]; }; autoBagging = derive2 { name="autoBagging"; version="0.1.0"; sha256="01k44rgkpbbr3m2x360aq0fz2qi7nz036g5dsh2y3jy94rmddbyy"; depends=[abind caret cluster CORElearn e1071 entropy infotheo lsr MASS minerva party rpart xgboost]; }; - autoFRK = derive2 { name="autoFRK"; version="1.2.0"; sha256="0xj4wh8m0zjhbcp3s6gfyakkqp2i9dm19hij0nl1x02xz8gl9kij"; depends=[fields filehash filehashSQLite filematrix FNN LatticeKrig MASS mgcv Rcpp RcppEigen RcppParallel RSpectra spam]; }; + autoFRK = derive2 { name="autoFRK"; version="1.3.0"; sha256="0mgnjlkrdj0rra98n58vp4ai3knmlla98lh6w5afm7gr0pwvi1px"; depends=[fields filehash filehashSQLite filematrix FNN LatticeKrig MASS mgcv Rcpp RcppEigen RcppParallel RSpectra spam]; }; + autoTS = derive2 { name="autoTS"; version="0.9.11"; sha256="1mwpazynp5hdc2ccnhvddkajfcd4qam23pvjl9accq1rnxzxkiyv"; depends=[dplyr forecast ggplot2 lubridate magrittr plotly prophet RcppRoll rlang shiny shinycssloaders tidyr]; }; autocogs = derive2 { name="autocogs"; version="0.1.3"; sha256="1xv2sv5p5pskp7mw9zcgcbwsbfzjiabigld92npd3mzy8n7zdli6"; depends=[broom checkmate diptest dplyr ggplot2 hexbin MASS mclust moments progress tibble]; }; autoencoder = derive2 { name="autoencoder"; version="1.1"; sha256="0ly1aanayk28nx6yqfhl7d0zm4vg6rfjikf5ibn8zhmkrfyflj1y"; depends=[]; }; - autoimage = derive2 { name="autoimage"; version="2.1"; sha256="0xqx2cmh7wfaj3mk3y5bld64frawaj3k0cnbd2cd13mrq8ma6j7b"; depends=[fields ggplot2 mapproj maps MBA viridisLite]; }; + autoimage = derive2 { name="autoimage"; version="2.1.12"; sha256="0qgnz66gm738clfchyz0xp8hd0w548c5r7sq1r6p64v8mvf34fhm"; depends=[fields ggplot2 mapproj maps MBA viridisLite]; }; autokeras = derive2 { name="autokeras"; version="1.0.1"; sha256="171q7i1zygzmkm34bi7grx5rvnjwks60ifk4k86kki5aiipzx4d5"; depends=[keras reticulate]; }; automagic = derive2 { name="automagic"; version="0.5.1"; sha256="1mmm6kj6mxrn3s4v8ryszkxr9z7bh9cvhin7xjq111fkwly7wjkq"; depends=[dplyr formatR knitr magrittr purrr remotes yaml]; }; automap = derive2 { name="automap"; version="1.0-14"; sha256="1190kbmp0x80x0hyifdbblb4ijq79kvrfn9rkp5k6diig4v30n0w"; depends=[gstat lattice reshape sp]; }; @@ -5289,13 +5433,13 @@ in with self; { autoplotly = derive2 { name="autoplotly"; version="0.1.2"; sha256="0ajzzj9w9f0v9n37liml63hq5xwkqq53lw85p0a2h99n4lg2hdg8"; depends=[ggfortify ggplot2 plotly]; }; autoshiny = derive2 { name="autoshiny"; version="0.0.2"; sha256="0s06ynnirgsh19x8qq4020piirkhvjqpvz372syygvlal062y6cn"; depends=[shiny]; }; autota = derive2 { name="autota"; version="0.1.3"; sha256="07n34v4lpql5n0y94pm07ywl2z9azjgjrpw7qyfxa6qw6gv71gid"; depends=[base64enc glue httpuv magrittr memoise purrr RJSONIO rlang rlist rstudioapi stringdist stringr xml2]; }; - autothresholdr = derive2 { name="autothresholdr"; version="1.3.5"; sha256="1dvc21w57ir34vhcrbz58scl4ly057yn1ibmdkly99hwfkpihv3x"; depends=[checkmate filesstrings glue ijtiff magrittr purrr Rcpp rlang]; }; + autothresholdr = derive2 { name="autothresholdr"; version="1.3.6"; sha256="16yzwq6vy78d7zp88j466086493a06v1hf4dn7xvd20igi3lw22r"; depends=[checkmate filesstrings ijtiff magrittr purrr Rcpp rlang stringr]; }; av = derive2 { name="av"; version="0.5.0"; sha256="0v99y47dsa2z3c4qawipdrzynla2aab3x0c8qzdi5w9r5y9a38sh"; depends=[]; }; available = derive2 { name="available"; version="1.0.4"; sha256="18dqm10dicbvjd5wli4nkv4fip0fgh2b9h9gm5511ayfsdg8lc8l"; depends=[cli clisymbols crayon desc glue jsonlite memoise SnowballC stringdist tibble tidytext udapi yesno]; }; avar = derive2 { name="avar"; version="0.1.1"; sha256="1i0bk3y0ca58ihwn4di8rpkp5vs2j5b80rcvaf72n9h2hp8i2ncz"; depends=[Rcpp RcppArmadillo simts]; }; averisk = derive2 { name="averisk"; version="1.0.3"; sha256="02j27d4jxgy2bk5sgxp1xdfyqr321civs99qj0g8cp34gwqk0j3m"; depends=[MASS]; }; - aweek = derive2 { name="aweek"; version="1.0.0"; sha256="0a9d4yp694qch34mf08qc5fwsn21h9mw1ak6vylaq73nwiihajw9"; depends=[]; }; - aws = derive2 { name="aws"; version="2.4-2"; sha256="1czlsy64nx6j7h1smgb561yyv3f98pwqwglk77yla4mx3fp14bvq"; depends=[awsMethods gsl]; }; + aweek = derive2 { name="aweek"; version="1.0.1"; sha256="0z2n003qg1565kanacw82i5bj33hjgbkp0glj20blwxgc3c7q25y"; depends=[]; }; + aws = derive2 { name="aws"; version="2.4-3"; sha256="0ccm8ffjf8bylhfr64j9wzi49hzigz4bs172pvkb0bi4d5vdr0l5"; depends=[awsMethods gsl]; }; aws_alexa = derive2 { name="aws.alexa"; version="0.1.7"; sha256="0k3kwkmi13j2nrkyi6ahpc98s24idx4m5s4wkqkgqhi8xaljpp7c"; depends=[aws_signature dplyr httr xml2]; }; aws_comprehend = derive2 { name="aws.comprehend"; version="0.2.1"; sha256="0qn4mkdd17c8kmrm4ml7l1x3rzaw3gbykhrj3m0ga53crcqdhqri"; depends=[aws_signature httr jsonlite]; }; aws_ec2metadata = derive2 { name="aws.ec2metadata"; version="0.2.0"; sha256="1lbljg2fp3yh1hwlbmprkc1prw80jv0ycvpg1vggagm68wm5x288"; depends=[curl jsonlite]; }; @@ -5304,51 +5448,48 @@ in with self; { aws_lambda = derive2 { name="aws.lambda"; version="0.2.0"; sha256="0vp13qw7mw8dz01q30z7bnj47qx9js1zmxasc2n733gi07fdj62f"; depends=[aws_signature base64enc httr jsonlite]; }; aws_polly = derive2 { name="aws.polly"; version="0.1.5"; sha256="1xfx9g5iq1wcl27cmj4ss3y3f5yr1qmma77ki09g3ji2xvd50101"; depends=[aws_signature httr jsonlite tuneR]; }; aws_s3 = derive2 { name="aws.s3"; version="0.3.21"; sha256="132cczq0ml7lpp2yl6l4p99dn1zihrncnpa6wyad4m9mnr50a8dx"; depends=[aws_signature base64enc curl digest httr xml2]; }; - aws_signature = derive2 { name="aws.signature"; version="0.5.2"; sha256="0skibgf2l6n7ql51gnlmvjyfmaqa8ijc9gywmyhvrcj9bix2pydf"; depends=[base64enc digest]; }; + aws_signature = derive2 { name="aws.signature"; version="0.6.0"; sha256="15llpcnrdq4y6jsn7079yjmgbr5d1wgy2ymsm3jj3gkrd5l4zzpp"; depends=[base64enc digest]; }; aws_transcribe = derive2 { name="aws.transcribe"; version="0.1.3"; sha256="1nni1b935i2ir67lfhcj0106vzr310mk2jvln32gvzbnqxcggz7m"; depends=[aws_signature httr jsonlite]; }; aws_translate = derive2 { name="aws.translate"; version="0.1.4"; sha256="1x6cvpfddgwywsji4ywygmqn3pwy3i1aci9lk4nsrrfkzggwcbpb"; depends=[aws_signature httr jsonlite]; }; awsMethods = derive2 { name="awsMethods"; version="1.1-1"; sha256="0hbmrcpdyg15zg4rysscsmxpxlpy0dkxx2aa63qibq7l1k14v4sh"; depends=[]; }; awsjavasdk = derive2 { name="awsjavasdk"; version="0.2.0"; sha256="1461h565il4y68g0a3k7wgn9jyb6pys8405f780ldg6g44aa7p60"; depends=[assertthat R_utils rappdirs rJava]; }; aziztest = derive2 { name="aziztest"; version="0.1.0"; sha256="0ida4n8dxliq3i1mhjknr5zn0vglfdp4mcg1frz423vds0grzdcn"; depends=[]; }; azuremlsdk = derive2 { name="azuremlsdk"; version="0.6.85"; sha256="16w4gispm3sk48zaw1mi0qxg3qgkpy995p6rak7liqkndqfpzh7s"; depends=[DT ggplot2 htmltools plyr reticulate rstudioapi servr shiny shinycssloaders]; }; - b3archives = derive2 { name="b3archives"; version="1.0.0"; sha256="0hhf6nj1k3xngrjfywylx0f6jsi5vsi9wns7h4c3fck76p09rrfq"; depends=[dplyr purrr xml2]; }; b6e6rl = derive2 { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaffvjgczryplg17nr3wigi1x0cxg7a"; depends=[]; }; bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; }; bReeze = derive2 { name="bReeze"; version="0.4-3"; sha256="17nc6qvw9l6sq8knd1mk193md2y3z1jlcjymqzl389yxj8s0i2il"; depends=[lubridate]; }; bSims = derive2 { name="bSims"; version="0.2-1"; sha256="024k9s42a9w5pmw024b15sj5ilcfpkm7lv59yimjicr9lmw246kb"; depends=[deldir intrval MASS mefa4 pbapply]; }; bWGR = derive2 { name="bWGR"; version="1.6.6"; sha256="1m5spafvl5pn0s60vaf8wz7iaibsa7laq7kp8y9xj20pp3f76hvr"; depends=[Rcpp]; }; baRcodeR = derive2 { name="baRcodeR"; version="0.1.5"; sha256="1fdywv7mvxx3q8pildsfllmw814f2p71xcwvfmplngv2vgrpzz9w"; depends=[DT miniUI qrcode rstudioapi shiny]; }; - baRulho = derive2 { name="baRulho"; version="1.0.1"; sha256="0wclqjh7pwb0hrhj04mrcchdxvi4ma56gxphgi3x04gx6n04pczg"; depends=[pbapply seewave tuneR warbleR]; }; + baRulho = derive2 { name="baRulho"; version="1.0.2"; sha256="1nm1jclis4xa4y7ljsydjwfch3xsxq4caj4gys57153m6ihrcyg2"; depends=[pbapply seewave tuneR warbleR]; }; babar = derive2 { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; }; babel = derive2 { name="babel"; version="0.3-0"; sha256="1iwvx69051yhlxbcl6bypvc3mcih0q8bf3i29r3i79356hp12xqa"; depends=[edgeR]; }; babelwhale = derive2 { name="babelwhale"; version="1.0.1"; sha256="0mgkg9hji4mab3l33vvyyyc1d2q84l1zrmg63vr3b3gr0d62jcnl"; depends=[crayon dplyr dynutils processx purrr]; }; - babette = derive2 { name="babette"; version="2.1.2"; sha256="06985zzibckrjqxfvbdxg88yv3jssbaaildjdp68zb8qk5bsds12"; depends=[beastier beautier mauricer phangorn remotes stringr testit tracerer xml2]; }; + babette = derive2 { name="babette"; version="2.1.4"; sha256="03bbd8qlymg6qfz60yprb8xyqix6ag532a9iv043s72ir9nkf1jp"; depends=[beastier beautier mauricer phangorn remotes stringr testit tracerer xml2]; }; babynames = derive2 { name="babynames"; version="1.0.0"; sha256="1vchzyk5pkr0zhh1q8k9g771n45jxiislipwkgrgamv7yzr49xsp"; depends=[tibble]; }; - bacistool = derive2 { name="bacistool"; version="0.9.9"; sha256="06734pi829xhfkpdhysa62x1sc0shhbdn6l9vls2cyfr30w6y6md"; depends=[rjags]; }; - backShift = derive2 { name="backShift"; version="0.1.4.2"; sha256="1nj7mcdpzfzq68qg86rrys752gzw69n99yyb0jzg6r8qrgpcxj49"; depends=[clue ggplot2 igraph MASS matrixcalc mvnmle reshape2]; }; - backbone = derive2 { name="backbone"; version="1.1.0"; sha256="1ggs22s5pxy0y8plnnr1mkvgcc3bvpz9a2427cw3kpp61gcsh5a8"; depends=[Matrix poibin]; }; + bacistool = derive2 { name="bacistool"; version="1.0.0"; sha256="1hby2bmxbc8qgjzgkp2flv89lpzzvg3vr7s98989ayjmv4vgmqaf"; depends=[rjags]; }; + backShift = derive2 { name="backShift"; version="0.1.4.3"; sha256="1dhmq51w07vcqlngsb04ip0wqbgqq2xdfdm1w82r082f07ywqb16"; depends=[clue ggplot2 igraph MASS matrixcalc reshape2]; }; + backbone = derive2 { name="backbone"; version="1.2.1"; sha256="1ax6agxiwsckga2hasg0dmyx1fxkr6c4f1xcx9s9b3sljpap7ga7"; depends=[CVXR igraph Matrix network Rcpp]; }; backpipe = derive2 { name="backpipe"; version="0.2.3"; sha256="12k2cv9x8h0b002m9c8g4vj5a7chp4b8jqz377ia0diqw89dydpm"; depends=[]; }; - backports = derive2 { name="backports"; version="1.1.6"; sha256="170rphqq28j0pcr28g6dxv3isp436ajhyzkpri31pn0lfm3szs6h"; depends=[]; }; + backports = derive2 { name="backports"; version="1.1.8"; sha256="1irc9c23hwliwkky1b3hi0dkzwalhb7zgjj08562ff1k8dqv4qf6"; depends=[]; }; backtest = derive2 { name="backtest"; version="0.3-4"; sha256="1s0mf247dz2vvyf4m3sp9xiqhv7xcs4rphyg9gdcy73060sah2ad"; depends=[lattice]; }; bacondecomp = derive2 { name="bacondecomp"; version="0.1.1"; sha256="1sd6pbhmx8vxz5c2cvvadbjy7p15y91gzs3n0ish7h5br1vq8fpm"; depends=[]; }; bacr = derive2 { name="bacr"; version="1.0.1"; sha256="14zr1v4rihx0ra3x0vsb81vsz0g8gzskkdxkg7nhiz835hp2fiy8"; depends=[MCMCpack]; }; badgecreatr = derive2 { name="badgecreatr"; version="0.2.0"; sha256="0mdixklaxky5gs8zm99ky280vxxlbq1mxnaarq6x0d1cb71bzv4l"; depends=[git2r]; }; - badger = derive2 { name="badger"; version="0.0.7"; sha256="1djgzn6ixfsdr0v4f3714mv2z2kl776dd2hq670g7bla4lp6344s"; depends=[desc dlstats rvcheck]; }; + badger = derive2 { name="badger"; version="0.0.8"; sha256="1kcyx8792al9cia2b3cvvv9gh5mpgb3s7w73dvbmjwhrlnif6qv0"; depends=[desc dlstats rvcheck]; }; baggedcv = derive2 { name="baggedcv"; version="1.0"; sha256="1rqs4sm6g1anck5s2dxlm1vcmylpphcbs2dpvf1sjki5lrzdq9z4"; depends=[doParallel foreach kedd mclust]; }; baggr = derive2 { name="baggr"; version="0.4.0"; sha256="1cbajifb4gavamj46zs9vk6ihhg6wnv2hn75452bdc2mc4ingn5n"; depends=[bayesplot BH crayon forestplot ggplot2 gridExtra Rcpp RcppEigen rstan rstantools StanHeaders testthat]; }; baguette = derive2 { name="baguette"; version="0.0.1"; sha256="1n8fjac9jha3g48w1iddqrh54gd4lzv1bs3f747y6jasp99y3vg7"; depends=[butcher C50 dials dplyr earth furrr generics hardhat magrittr parsnip purrr rlang rpart rsample tibble tidyr withr]; }; - bahc = derive2 { name="bahc"; version="0.1.0"; sha256="1i5s3qjwwsm94vplkifv72kql8wgiwsc7n1d0707rva92iyv7rcy"; depends=[fastcluster matrixStats]; }; + bahc = derive2 { name="bahc"; version="0.2.0"; sha256="0n57zcm257c01cdyhsy5si36h3yz9b8nwixx46r27f0xzrzdryl2"; depends=[fastcluster matrixStats]; }; bain = derive2 { name="bain"; version="0.2.4"; sha256="15car9j11s0ywss13g5swf1dxjjc91xmbkvx200mivca9bj6245m"; depends=[lavaan]; }; - bairt = derive2 { name="bairt"; version="0.1.2"; sha256="17nc0lp0bzwshik33v0gq5d6nd2gvm4799b7rfiq089zhnzv90kj"; depends=[coda mvtnorm shiny shinyjs]; }; baitmet = derive2 { name="baitmet"; version="1.0.1"; sha256="02ydakqr8v41hdnhcsgigwnic8d48qswryg1srb5w1fqdmdglnkl"; depends=[erah HiClimR Rcpp signal XML]; }; balance = derive2 { name="balance"; version="0.2.4"; sha256="13ksd1ysd2by8qdc3vn1fgnaj1c2v0py7f501bajiyq6hpcwn1c5"; depends=[ggplot2]; }; - ballr = derive2 { name="ballr"; version="0.2.6"; sha256="0434b7hr5lcz2f7mdfkkmvh407ypyycki0bjda6lgiy0pr22hwsc"; depends=[dplyr janitor lubridate magrittr rlang rvest xml2]; }; - bama = derive2 { name="bama"; version="0.9.1"; sha256="1yx0gv5qxq3si5vzrrjy8y6d3b0v433aljyniyx9dp6q6mcqrhvw"; depends=[Rcpp RcppArmadillo]; }; + bama = derive2 { name="bama"; version="1.0.1"; sha256="009k79jwmbi88qknp7fmg5lb09q3h8b8r26skfzwj7bs24980jvr"; depends=[Rcpp RcppArmadillo]; }; bamboo = derive2 { name="bamboo"; version="0.9.25"; sha256="1il8sn8ck36b1m9hazhf6gmr58iqi2hjn0rrpcv1laij0lybrcws"; depends=[rscala]; }; bamdit = derive2 { name="bamdit"; version="3.3.2"; sha256="11v9hy8ijbcqhwim0s3y69dz11jvys4vjvfnshj4p5qdz38sji6l"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; bamlss = derive2 { name="bamlss"; version="1.1-2"; sha256="0s0i2qpwcshfqxciwp5w7mxvw0a1x52y4yaspvf1gx9jms7bqn8b"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm raster sp survival]; }; bamp = derive2 { name="bamp"; version="2.0.8"; sha256="0p7vi9gqplqnrc0vl55m1xx160k5kdxs4sxqxyrg908yhsnr5vj6"; depends=[abind coda]; }; - banR = derive2 { name="banR"; version="0.2.1"; sha256="0bqy8srxsd0r872scpij8lyrvb0n8jicwpvf9wh1xk1bjmlq3vb5"; depends=[dplyr httr magrittr purrr readr rlang tibble]; }; + banR = derive2 { name="banR"; version="0.2.2"; sha256="0a9kgfd5jzcb5hpl1fzgvmfszmji2vy14gnl8k9irn40n6kdjs0v"; depends=[dplyr httr magrittr purrr readr rlang tibble]; }; bandit = derive2 { name="bandit"; version="0.5.0"; sha256="03mv4vbn9g4mqikd9map33gmw2fl9xvb62p7gpxs1240w5r4w3fp"; depends=[boot gam]; }; bang = derive2 { name="bang"; version="1.0.1"; sha256="0m7p9gzspkyp40ir842ff4b1827w9rh7x49kpp3y4dpi83krqy5a"; depends=[bayesplot rust]; }; bannerCommenter = derive2 { name="bannerCommenter"; version="0.1.1"; sha256="0ndm4z6gkd9flxsh1sx08c5ahm8297hzn8f5hc1mpn5m998ajjsj"; depends=[]; }; @@ -5357,12 +5498,13 @@ in with self; { bapred = derive2 { name="bapred"; version="1.0"; sha256="08kvc4cc984jv08ikwbja8zxidrcdiwi5w88hlqakbm8yc6hzssa"; depends=[affy affyPLM Biobase FNN fuzzyRankTests glmnet lme4 MASS mnormt sva]; }; barcode = derive2 { name="barcode"; version="1.1"; sha256="14zh714cwgq80zspvhw88cs5b82gvz4b6yfbshj9b7x0y2961nxd"; depends=[lattice]; }; barplot3d = derive2 { name="barplot3d"; version="1.0.1"; sha256="182kpiknv3id1bsgcc6b3ahbxmm8x3lxcpf1r6rckpr3s0whfx3g"; depends=[rgl]; }; - barsurf = derive2 { name="barsurf"; version="0.4.0"; sha256="1n8kwzawdgbazd4cshavlki1di5xfczgfpd7vv2rrb8cmwlsnw61"; depends=[colorspace kubik]; }; + barsurf = derive2 { name="barsurf"; version="0.5.0"; sha256="1pfy4l3cg1dzn17rxgh2lhdfm34wzd2wvhbvc7n46gqplghrpa7h"; depends=[colorspace kubik]; }; bartBMA = derive2 { name="bartBMA"; version="1.0"; sha256="15syk5a3lgzfyp17wk8mk14317yxsr47br26kyah5jg3dq4cyqdg"; depends=[BH mvnfast Rcpp RcppArmadillo Rdpack]; }; - bartCause = derive2 { name="bartCause"; version="1.0-2"; sha256="1cg5z9hn78zmymls7dpqpg439mfvh6np3gj7qwb9y682va4ky34h"; depends=[dbarts]; }; - bartMachine = derive2 { name="bartMachine"; version="1.2.4.2"; sha256="100zcpbndbps01qnybrgmsfnh37j93661l4v7zcin0i56cvgg998"; depends=[bartMachineJARs car missForest randomForest rJava]; }; + bartCause = derive2 { name="bartCause"; version="1.0-4"; sha256="1a1g4376l31pswxmmipm0xm3zazm1kfm3iwknjx6pchjavjhin9y"; depends=[dbarts]; }; + bartMachine = derive2 { name="bartMachine"; version="1.2.5.1"; sha256="17bxpynwyaa1j5a1smn1k4yb6ygr3fi6xlqdvh05z7q36432013j"; depends=[bartMachineJARs missForest randomForest rJava]; }; bartMachineJARs = derive2 { name="bartMachineJARs"; version="1.1"; sha256="1wpfzrb6mrx3xmxy4rgnwygmpqq2l4ki2xqr4m51g1bl9nwirhzj"; depends=[rJava]; }; basad = derive2 { name="basad"; version="0.2.0"; sha256="1qc2amkrjrgdqys275p82lmbpjszm5rzjdpri7hqc9d8b8q1vc9q"; depends=[Rcpp RcppEigen rmutil]; }; + base_rms = derive2 { name="base.rms"; version="1.0"; sha256="0lsbbcvmq5n3dpqic9qkyr8wdbmagaw32qfdnl0ck5b6ijh2wz0a"; depends=[do rms survival]; }; base2grob = derive2 { name="base2grob"; version="0.0.3"; sha256="1hs9qym2hwq3wrknsfpmn9dvbxs3vyiqs3yfcb26knxqlv3qqw3j"; depends=[ggplotify]; }; base64 = derive2 { name="base64"; version="2.0"; sha256="1labh0ycdm2xcjssj8bhnyjvbk44mcdsi0rb2p8rfqa428mrq9cf"; depends=[openssl]; }; base64enc = derive2 { name="base64enc"; version="0.1-3"; sha256="13b89fhg1nx7zds82a0biz847ixphg9byf5zl2cw9kab6s56v1bd"; depends=[]; }; @@ -5370,7 +5512,7 @@ in with self; { baseballDBR = derive2 { name="baseballDBR"; version="0.1.2"; sha256="0w54g1avcqamc12lmvjchlqbqck9jfjccm441k03nsql460mpydq"; depends=[dplyr magrittr rvest xml2]; }; baseflow = derive2 { name="baseflow"; version="0.12.0"; sha256="0zz7clrqifxk0igvqr38ic8sif86nli8gp8np8nfx89md2zz1njk"; depends=[airGR]; }; basefun = derive2 { name="basefun"; version="1.0-7"; sha256="1g72g77yzf6ji4aglm4hpaqbz5ma2d6y93g7r17066iwyzl0ygn3"; depends=[Matrix orthopolynom polynom variables]; }; - baseline = derive2 { name="baseline"; version="1.2-3"; sha256="1d8k5py3wn82nm9pnsnh9ylbdkmkm3j938cdil3igwd3qzkjp63b"; depends=[limSolve SparseM]; }; + baseline = derive2 { name="baseline"; version="1.3-0"; sha256="1qdzdcz2417slrp7qw8dh76lyvk266jzdqhff05bdalwnk8dxxbc"; depends=[limSolve SparseM]; }; basetheme = derive2 { name="basetheme"; version="0.1.2"; sha256="0yck4qc7qd406s7kw95xgnfc0pfvzk3ylhkv6mk6l2wbkfm8ldrb"; depends=[]; }; basf = derive2 { name="basf"; version="0.1.0"; sha256="0v4hhgg8qq4hdih22i3akrjpc4xjnwi81968nyfcv00gy8fd5gjv"; depends=[sf tibble]; }; basicMCMCplots = derive2 { name="basicMCMCplots"; version="0.2.5"; sha256="0sdvhm7n9n67gwymv7whk6f6lfgp74gczisqw90096la566ndd2f"; depends=[]; }; @@ -5380,45 +5522,49 @@ in with self; { basket = derive2 { name="basket"; version="0.10.2"; sha256="0d3qp1p11w9warl4cd9icnygqyiarm6vzsnph2hl09lmsqbghahl"; depends=[cli crayon dplyr foreach GenSA ggplot2 ggraph gridExtra igraph itertools RColorBrewer tibble tidygraph tidyr]; }; bastah = derive2 { name="bastah"; version="1.0.7"; sha256="08xdba16wj0inp0kq2sbcrdr6wj8bwlq7rqnfrzjrz03wxhc5bk0"; depends=[BigQuic foreach glmnet lars MASS Matrix scalreg]; }; batade = derive2 { name="batade"; version="0.1"; sha256="1lr0j20iydh15l6gbn471vzbwh29n58dlpv9bcx1mnsqqnsgpmal"; depends=[hwriter]; }; + batata = derive2 { name="batata"; version="0.1.1"; sha256="0qz1apzr9qih2lnkwgncf6hdpl6knn1ifn567a3ysc822y8hbb3n"; depends=[fs glue lubridate]; }; batch = derive2 { name="batch"; version="1.1-5"; sha256="0wdgfvk2i542cqg34ikvzwlix09f2jyjb32a0f4zh9vg9nrywswq"; depends=[]; }; - batchmeans = derive2 { name="batchmeans"; version="1.0-3"; sha256="1qkdljngvlahk0pbrkarkjh2g4sxxwiva9f3m5y8gz8pjw9fpy9n"; depends=[]; }; + batchmeans = derive2 { name="batchmeans"; version="1.0-4"; sha256="0b2npqxrv08zxj59sahj5s87inhl6dyl10bj01v0l1yr14q5g546"; depends=[]; }; batchscr = derive2 { name="batchscr"; version="0.1.0"; sha256="094l2cq7lcdrlsdmsxmbal7srxdg20rxbms46h1sd414wq26d413"; depends=[]; }; batchtools = derive2 { name="batchtools"; version="0.9.13"; sha256="02bwfinwgn5nl638997javig61jmr0ci0qybmprz13jnvmam1yns"; depends=[backports base64url brew checkmate data_table digest fs progress R6 rappdirs stringi withr]; }; batman = derive2 { name="batman"; version="0.1.0"; sha256="0ccgx506p4iri23k2ikb8jmh04dp08w66785bv52iy8kd359h43f"; depends=[Rcpp]; }; batteryreduction = derive2 { name="batteryreduction"; version="0.1.1"; sha256="0j838q7063bplkzd50kmnxji80cgysfsq7m1qifv8z7a2zsh8c8g"; depends=[pracma]; }; - baycn = derive2 { name="baycn"; version="1.1.0"; sha256="1nimy9vc1i9an9992wwdr0qq8zi9363rjiv5ci81wliys1qlggaq"; depends=[egg ggplot2 gtools MASS]; }; + baycn = derive2 { name="baycn"; version="1.2.0"; sha256="1ykz1brs3mz94n86d5qaq25vf24j5adyzpddxqmn7qklbxxr6fh5"; depends=[egg ggplot2 gtools igraph MASS]; }; + bayefdr = derive2 { name="bayefdr"; version="0.1.0"; sha256="1c40jvdhbc23yvqiidjgs2f0p3mp3zw9wq0ap1d91if99p6him7n"; depends=[assertthat ggplot2 reshape2]; }; bayes4psy = derive2 { name="bayes4psy"; version="1.2.3"; sha256="0f8rlivqc36x15c16dybpqgankhc73gcn206yhnr7nyb896nfnl0"; depends=[BH circular cowplot dplyr emg ggplot2 mcmcse metRology Rcpp RcppEigen reshape rstan rstantools StanHeaders]; }; bayesAB = derive2 { name="bayesAB"; version="1.1.2"; sha256="0xg29s3h4dy43snlc365q80ix96hwh4mfy1qvv87yys3i9zfinm5"; depends=[ggplot2 Rcpp rlang]; }; - bayesCT = derive2 { name="bayesCT"; version="0.99.2"; sha256="11y22xg7f47vj47pd5z44g20ff2jjn67s39win0qngl69ii1ph98"; depends=[bayesDP dplyr magrittr msm purrr survival]; }; + bayesCT = derive2 { name="bayesCT"; version="0.99.3"; sha256="0ragig1x34syhsnbnd58l2s7g23j7fb0cl9wkasvxq8cicw5hqgn"; depends=[bayesDP dplyr magrittr purrr survival]; }; bayesDP = derive2 { name="bayesDP"; version="1.3.3"; sha256="0g2kw8rsa9s5ahvsr4j363nqs4s49pmbaxgsqrlg8nizjsmj8p49"; depends=[ggplot2 MCMCpack Rcpp RcppArmadillo survival]; }; - bayesDem = derive2 { name="bayesDem"; version="2.5-1"; sha256="1cxrqil1p692mbzkcj1fvsx335qyy6c1y43mq48s4shs1hhc69bn"; depends=[bayesLife bayesPop bayesTFR gWidgets gWidgetsRGtk2 RGtk2 wpp2015]; }; bayesGARCH = derive2 { name="bayesGARCH"; version="2.1.5"; sha256="01lmpi659cisr7rixz8khaxzyvkvdkvcxjj37x3lw7dpf4ir2535"; depends=[coda mvtnorm]; }; bayesImageS = derive2 { name="bayesImageS"; version="0.6-0"; sha256="1m0az3z8hwaxpqd1ljly9vlp41dp7c7p39r0rx7k9vcs201vlcg8"; depends=[Rcpp RcppArmadillo]; }; bayesLife = derive2 { name="bayesLife"; version="4.1-0"; sha256="1sswnwv4x77sd07d3hpsf3wfd5szrdnc4fni8glzl8rk3y0r3jns"; depends=[bayesTFR car coda data_table hett wpp2019]; }; - bayesPop = derive2 { name="bayesPop"; version="8.1-1"; sha256="1xhzind6k23rcgy1iw0bqks6wz77755qs9pw6sqinfi8qbv0ax1l"; depends=[abind bayesLife bayesTFR data_table fields googleVis MortCast plyr reshape2 rworldmap wpp2012 wpp2019]; }; + bayesPop = derive2 { name="bayesPop"; version="8.1-3"; sha256="018nwm6nmg0cpgkmiiqijry59f1adx103wy5dgz8a64f9hj4nqdi"; depends=[abind bayesLife bayesTFR data_table fields googleVis MortCast plyr reshape2 rworldmap wpp2012 wpp2019]; }; bayesQR = derive2 { name="bayesQR"; version="2.3"; sha256="1c6y7r9h9626ghp68pl5k1g0l95fwd6dp0jfznmhy53qza0ny8z4"; depends=[]; }; bayesSurv = derive2 { name="bayesSurv"; version="3.3"; sha256="00brysldz0zbjbjs0qnd2mbpc3ipyz7224bnbwlf8d3b6ivw8iwv"; depends=[coda smoothSurv survival]; }; bayesTFR = derive2 { name="bayesTFR"; version="6.4-0"; sha256="159lcii3hpl91vypl16adzair6ik85fyjybyy6fjibxvjkn3fh3b"; depends=[coda MASS mvtnorm wpp2019]; }; bayesammi = derive2 { name="bayesammi"; version="0.1.0"; sha256="1vfcmk47x71c5akj3ppxzb74293pikspknkkv08f8p15v0chk7fs"; depends=[dplyr ggplot2 lme4 magrittr MASS mvtnorm rlang rstiefel scales tibble tidyr tmvtnorm]; }; - bayesanova = derive2 { name="bayesanova"; version="1.3"; sha256="11ask03l4s0459bbd968686hsbzgmm5qjwjwb9nqvfaqhwmjl0z2"; depends=[]; }; + bayesanova = derive2 { name="bayesanova"; version="1.4"; sha256="1azr1yjigy3hygvzngs6b0m92kskxv0kga80j7ccsycawygmkjcs"; depends=[]; }; bayesbio = derive2 { name="bayesbio"; version="1.0.0"; sha256="08qa4lzkrcwin7n3kzfqfdlnlqahdmjl1lxpdh29n780cgyjfvs0"; depends=[]; }; bayesboot = derive2 { name="bayesboot"; version="0.2.2"; sha256="0976ryd0gbw3kpmxg2qxyp1m2swnrpa86vdhvqrqxp7fcrs8cs2z"; depends=[HDInterval plyr]; }; + bayesbr = derive2 { name="bayesbr"; version="0.0.0.1"; sha256="0f2sy2m417fzznlp2k2ag2xj6jdn027gibsi0cxhlk189pxxfxri"; depends=[BH coda dplyr fdrtool Formula ggplot2 loo magrittr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr tidyr]; }; + bayescopulareg = derive2 { name="bayescopulareg"; version="0.1.2"; sha256="15arqmjy99rqaywna643l6grl3zlkvygz2hkmhlrjpr35mqd0kw1"; depends=[Rcpp RcppArmadillo RcppDist]; }; bayescount = derive2 { name="bayescount"; version="0.9.99-5"; sha256="0c2b54768wn72mk297va3k244256xlsis9cd6zn6q5n1l7ispj6j"; depends=[coda rjags runjags]; }; bayesdfa = derive2 { name="bayesdfa"; version="0.1.3"; sha256="1jgk1m49aksc2l04qf6k1vddaj6byxbf5vk259i0wcyb76zw785y"; depends=[BH dplyr ggplot2 loo Rcpp RcppEigen reshape2 rlang rstan rstantools StanHeaders]; }; bayesdistreg = derive2 { name="bayesdistreg"; version="0.1.0"; sha256="04slvxzbqdi2ak3dlw4lfx55rhw28js8yjmvjpy8vvgq39vcx3dq"; depends=[MASS sandwich]; }; bayesianETAS = derive2 { name="bayesianETAS"; version="1.0.3"; sha256="0nbif0b6lcik2kh948zg5ska5mvkdsfr0dg8ndnfpscm2mp7y1dg"; depends=[]; }; + bayeslincom = derive2 { name="bayeslincom"; version="1.0.0"; sha256="16wy946c05hq6bfn3h364s597wipzwxvdbpq8j2ja0rcsq5x9vw3"; depends=[ggplot2 lifecycle]; }; bayeslm = derive2 { name="bayeslm"; version="0.8.0"; sha256="1gvqkbz1wmqkxjwkdgj5pir5j1qy5dzjm4jv6mz3mplm16z5vzbl"; depends=[coda Rcpp RcppArmadillo RcppParallel]; }; bayesloglin = derive2 { name="bayesloglin"; version="1.0.1"; sha256="0j2ziahf6mwsz2gvb1azvdzlmszlpqgr5zqcqa68pxgq947sa2cs"; depends=[igraph]; }; bayeslongitudinal = derive2 { name="bayeslongitudinal"; version="0.1.0"; sha256="0g45ikpnbry1albb3asrzab5z3sy98yf74c64qn02d65xgafifwg"; depends=[LearnBayes MASS mvtnorm]; }; bayesm = derive2 { name="bayesm"; version="3.1-4"; sha256="154glks7rsjkza0sfi1kj7wj727py9sl1ba6sswflwmwc9n226q6"; depends=[Rcpp RcppArmadillo]; }; bayesmeta = derive2 { name="bayesmeta"; version="2.5"; sha256="1dvprpmrqnwxhsxb4h972rx7mww6r6w7y5mjw7wm4p1pddzdhqyc"; depends=[forestplot metafor]; }; bayesmix = derive2 { name="bayesmix"; version="0.7-4"; sha256="1qms1nnk2nq3gqr8zf2b9ri4wv8jrxv5i8s087k1rwdvya3k5r9a"; depends=[coda rjags]; }; - bayesplot = derive2 { name="bayesplot"; version="1.7.1"; sha256="0sq0ajnm96hmlqf1cv5n2gshh3qdij4n1zbm7qrniz2q6b5aj342"; depends=[dplyr ggplot2 ggridges glue reshape2 rlang tibble tidyselect]; }; + bayesplot = derive2 { name="bayesplot"; version="1.7.2"; sha256="0aqy4bfjq1fmds0vpacsmqih528cp8wk4v4w0balzkph6zqzpwcl"; depends=[dplyr ggplot2 ggridges glue reshape2 rlang tibble tidyselect]; }; bayespref = derive2 { name="bayespref"; version="1.0"; sha256="0gwlzs7qkgmf90np7xv85d27jjqggyhfj00vpya664a2znyjb3jm"; depends=[coda lattice MASS MCMCpack RColorBrewer]; }; bayesreg = derive2 { name="bayesreg"; version="1.1"; sha256="12g5sklip3i8fpzrhvbikhgnl6kx8fxb88hfv8f34jy71r3h7zyp"; depends=[pgdraw]; }; bayess = derive2 { name="bayess"; version="1.4"; sha256="0axipk5hn2hw3g4dfh7y3xa0dxqmi8kqpbr77nl14y7ydpija6xm"; depends=[combinat gplots MASS mnormt]; }; - bayest = derive2 { name="bayest"; version="1.1"; sha256="0nl3zq5bp6yqw351vcrzph5y0jn9bml7isf4nsxl7braivalf72n"; depends=[]; }; - bayestestR = derive2 { name="bayestestR"; version="0.6.0"; sha256="0s7wdmk8avgaqk2b7fcf4bsh13isrkl1q4y7z2y8jhdagxxxnzd1"; depends=[insight]; }; + bayest = derive2 { name="bayest"; version="1.4"; sha256="1ax1z5aw0irpr5qmfscvbssrz58ablx0nkl0d9fx51f2g1cwm65n"; depends=[MCMCpack]; }; + bayestestR = derive2 { name="bayestestR"; version="0.7.2"; sha256="1c82bpxg2ha93rna4sy9pdp422dnk6b378dcg8x04clfg0y0lsi2"; depends=[insight]; }; bayesvl = derive2 { name="bayesvl"; version="0.8.5"; sha256="1gb2in8hjiqb3daqz6phn1639i6p2w641kxrm3zh4rm3d6hg6hzr"; depends=[bayesplot bnlearn coda dplyr ggplot2 reshape2 rstan StanHeaders viridis]; }; bayfoxr = derive2 { name="bayfoxr"; version="0.0.1"; sha256="1295296mbjpmd0bg1pfxvyp0az3sry6gsq9ir3l8x64w5a4qrzd5"; depends=[]; }; baymedr = derive2 { name="baymedr"; version="0.1.0"; sha256="0y01s6dpnhnxqqvl15cdxmb5ysb685bbp47xifyp5nz8sjh2pci0"; depends=[rlang stringr]; }; @@ -5430,17 +5576,21 @@ in with self; { bbl = derive2 { name="bbl"; version="0.3.1"; sha256="1a6f5744xwn28qkqxlc5q7crarlx0jjg4z7wpp7jwr6ar152apvm"; depends=[pROC RColorBrewer Rcpp]; }; bbmle = derive2 { name="bbmle"; version="1.0.23.1"; sha256="0p3l9shbr2846qmw8n0fyzf4j7gmi08aypl82jml3dwh26q1whk0"; depends=[bdsmatrix lattice MASS Matrix mvtnorm numDeriv]; }; bbo = derive2 { name="bbo"; version="0.2"; sha256="19xrbla3bb3csg3gjjrpkgyr379zfwyh293bcrcd6j8rnm6g4i01"; depends=[]; }; + bbotk = derive2 { name="bbotk"; version="0.2.0"; sha256="1yrcbpynqh3hfj6zf2czfb12spid9gwfq6anzmvbpj7jg5a394ri"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; bbreg = derive2 { name="bbreg"; version="1.0.0"; sha256="1v2m7ky9kd16psm9w8njfjzkwc4prvyq0fgbl6i210pjwwv9zvhr"; depends=[betareg expint Formula statmod]; }; - bbricks = derive2 { name="bbricks"; version="0.1.2"; sha256="08ylvxkcpg4imrv6qzpmkxvdckqnib8b9ly47zircyjqmzzdrain"; depends=[]; }; + bbricks = derive2 { name="bbricks"; version="0.1.4"; sha256="1hv4hvnns9vgl6c3n7kg3g9mfcp26ksps29hdl5nwi28cgkx80w2"; depends=[]; }; + bbsBayes = derive2 { name="bbsBayes"; version="2.3.3.2020"; sha256="1zxr93n17svv7ca09gkn7w3j1i1llwilx3nvfsaq57p7qh47mjah"; depends=[dplyr geofacet ggplot2 ggrepel jagsUI latticeExtra progress rappdirs rgdal sbtools sf stringr]; }; bbw = derive2 { name="bbw"; version="0.1.3"; sha256="1z3an561qh0rfi3jhh1ghsdbg8aimqmf4hpqri2jz39in3p0gwg4"; depends=[car]; }; bc3net = derive2 { name="bc3net"; version="1.0.4"; sha256="15dghd0v1s71h77iw8b49v5h7wcda5mb4540lfyibsdipbashv2h"; depends=[c3net igraph infotheo lattice Matrix]; }; bcROCsurface = derive2 { name="bcROCsurface"; version="1.0-4"; sha256="0bhwwr9pa78a8lhjz2cfbm09jq585p89l6dr2ihpil4q5r8cmsjr"; depends=[boot nnet Rcpp RcppArmadillo rgl]; }; - bcRep = derive2 { name="bcRep"; version="1.3.6"; sha256="1fibx11ykkkjv4sgg6zc2a0g270384z2cf68hwghnld0wi002b5z"; depends=[ape doParallel foreach gplots ineq plotrix proxy stringdist vegan]; }; + bcTSNE = derive2 { name="bcTSNE"; version="0.10.0"; sha256="1109kgrrpizhg7j1wbkk6f84hsw89xk2l6vwxpjpg6rh50z3bfi6"; depends=[RSpectra Rtsne]; }; bcaboot = derive2 { name="bcaboot"; version="0.2-1"; sha256="0wf1igkb0lidz4pvh3kfccs9858m1g9650wprrvrpwsdfrcd7rc9"; depends=[]; }; - bcdata = derive2 { name="bcdata"; version="0.1.2"; sha256="0h5mrcpq64d2i9q6m5n8bq4g06zfyyscllwg6k1zm22vsw1yi1ki"; depends=[cli crul dbplyr dplyr glue jsonlite leaflet leaflet_extras purrr readr readxl rlang sf tidyselect xml2]; }; + bcc = derive2 { name="bcc"; version="1.3.1"; sha256="0ac0wasdifd0v47r9sxrsix5hv7masiphn6dyxpqdrd11z7iimgz"; depends=[qcc]; }; + bcdata = derive2 { name="bcdata"; version="0.2.0"; sha256="11sgc0k05pjp3ip923mrwzjr86hnikqdkbma6vj7bymxhh9il5bz"; depends=[cli crul dbplyr dplyr glue jsonlite leaflet leaflet_extras purrr readr readxl rlang sf tibble tidyselect xml2]; }; bcf = derive2 { name="bcf"; version="1.3"; sha256="1f8szjgsyhnff3zzmmy7bnsam12ywj46n3fxsj1y3fn1m5wnd8mz"; depends=[Rcpp RcppArmadillo]; }; + bcfrailph = derive2 { name="bcfrailph"; version="0.1.0"; sha256="0l5v3bc8xw71cj012sbmq1f0glg7m545jzqyg01gzl8kbgm3lbbj"; depends=[survival]; }; bcgam = derive2 { name="bcgam"; version="1.0"; sha256="1dg2fcjw8xal77irviiz260qpar2iqkjvi2k4qfm71jyq0ir0axk"; depends=[coda igraph nimble]; }; - bcmaps = derive2 { name="bcmaps"; version="0.18.0"; sha256="0zq5fp9r6n2mpjd96ri7lmp63g8lm5sjwgfmc4cligrch3kakzxy"; depends=[httr rappdirs sf]; }; + bcmaps = derive2 { name="bcmaps"; version="0.18.1"; sha256="11gj4f0qqgcvyri8zsnfzk02y9xyiwkfy18wahrg4zrpb4ai78zp"; depends=[httr rappdirs sf]; }; bcmixed = derive2 { name="bcmixed"; version="0.1.4"; sha256="0am6amk1axfxkxgp9nmfys4fp4snplfncwkzh02im7a6zr3v1m63"; depends=[MASS nlme]; }; bcp = derive2 { name="bcp"; version="4.0.3"; sha256="0vhs89lb2wpanqsljclpvwbjmgdsc3jicws8bzqiqh8mbs3nzpxy"; depends=[Rcpp RcppArmadillo]; }; bcpa = derive2 { name="bcpa"; version="1.1"; sha256="0rwbd39szp0ar9nli2rswhjiwil31zgl7lnwm9phd0qjv8q0ppar"; depends=[plyr Rcpp]; }; @@ -5449,11 +5599,10 @@ in with self; { bcrypt = derive2 { name="bcrypt"; version="1.1"; sha256="1wwdin8x09y8n8zrwj1ylh5ikcz0v0la4wmrsvbdr61cg336wzx4"; depends=[openssl]; }; bcv = derive2 { name="bcv"; version="1.0.1"; sha256="0yqcfariw9sw0b8cpljcr7vf5rf0cwr1wbif23icchfaxk2m42gj"; depends=[]; }; bdDwC = derive2 { name="bdDwC"; version="0.1.15"; sha256="0yraq8a0wgz12rzi2dx0gdcz5rx99qd2pzw972wjqyq3rs41pwx0"; depends=[shiny shinyBS shinydashboard shinyFiles shinyjs]; }; - bda = derive2 { name="bda"; version="14.3.19"; sha256="0x2aw5lb32f4i1g1ls68rf92356vvmsr1rxps7laaiqh5xjzvqv2"; depends=[]; }; + bda = derive2 { name="bda"; version="15.0.2"; sha256="1by3xhx1z44fp1kqx380f6hysfq2w7y9ajpsz0wygiwlricn9gd9"; depends=[]; }; bdchecks = derive2 { name="bdchecks"; version="0.1.7"; sha256="1pzsvn1m1f9bdmhxmh57pvn9jm4z41rkvv6h60hq2lfgkapnjy7q"; depends=[bdDwC data_table DT finch knitr rgbif shiny shinyBS shinydashboard shinyjs spocc yaml]; }; bdclean = derive2 { name="bdclean"; version="0.1.15"; sha256="14cy8yaqd6bg2zyh2wvndydk9sigaydavxl4cfypqz5kqdhj82z9"; depends=[bdchecks bdDwC data_table DT finch knitr leaflet rgbif rmarkdown shiny shinydashboard shinyjs spocc]; }; bde = derive2 { name="bde"; version="1.0.1"; sha256="1f25gmjfl58x4pns89abfk85yq5aad3bgq9yqpv505g5gxk62d3v"; depends=[ggplot2 shiny]; }; - bdl = derive2 { name="bdl"; version="1.0.2"; sha256="0zkfpv540cadl8vsy6n85120jmmbla78kmx2k6ifglwx7i7m5ps7"; depends=[dplyr ggplot2 ggpubr httr jsonlite magrittr purrr randomcoloR sf tibble tidyr tmap tmaptools]; }; bdots = derive2 { name="bdots"; version="0.1.19"; sha256="1cj6ly62d50z6713119hadl90cxf5x30wpnpx6mssmd49zds6nxb"; depends=[doParallel doRNG foreach Matrix mvtnorm nlme]; }; bdpar = derive2 { name="bdpar"; version="2.0.0"; sha256="0vn53pzr8j3jdl03jzcyjgf0n486l472jm3mm92df3219733l2wi"; depends=[magrittr pipeR purrr R6 rlist]; }; bdpopt = derive2 { name="bdpopt"; version="1.0-1"; sha256="1z7mdqklw3frsdzyhvx8s8wvblwm28fr1gca2yrivqjng0r47lx4"; depends=[coda rjags]; }; @@ -5465,16 +5614,15 @@ in with self; { bdynsys = derive2 { name="bdynsys"; version="1.3"; sha256="07gfyp0qwq9y1cnh7lhcz7q0b1s51cjwlbpll50l2cza2dszmf29"; depends=[caTools deSolve Formula Hmisc MASS matrixStats plm pracma]; }; bea_R = derive2 { name="bea.R"; version="1.0.6"; sha256="15pdbwz7av8862bl144n998qk0w9rqwip9m2brdm5hj7id5xdlif"; depends=[chron colorspace data_table DT ggplot2 googleVis gtable htmltools htmlwidgets httpuv httr jsonlite magrittr munsell plyr Rcpp scales shiny shinydashboard stringi stringr xtable yaml]; }; beadarrayFilter = derive2 { name="beadarrayFilter"; version="1.1.0"; sha256="044dq5irc00v2f2gjz0vb69w7q7b84lppc55ganabdv4f0dxdblc"; depends=[beadarray RColorBrewer]; }; - beadarrayMSV = derive2 { name="beadarrayMSV"; version="1.1.0"; sha256="0785vmjsli37hjyppk7hlqmn0b683s1apysx9dghbw4h6rgvr8n9"; depends=[Biobase geneplotter limma rggobi]; }; beadplexr = derive2 { name="beadplexr"; version="0.4.0"; sha256="0y5xrs88zm2bp2dlz8bndldispyj6ipgjr7vzrfl26yd2p7qjqd0"; depends=[cluster dplyr drc fpc ggplot2 magrittr mclust purrr raster rlang tibble tidyr yaml]; }; beakr = derive2 { name="beakr"; version="0.3.1"; sha256="1mir7scqwmsqs6hhi0xramdxk75x7zs4ppwrgc688y8j7dgg01ys"; depends=[base64enc httpuv jsonlite magrittr mime R6 stringr webutils]; }; - beam = derive2 { name="beam"; version="2.0.1"; sha256="0z95d5kjfv6byk8j5smkn74kgcircav739jrawmx161lxvznf49i"; depends=[assertthat BH fdrtool igraph knitr Matrix Rcpp RcppArmadillo]; }; + beam = derive2 { name="beam"; version="2.0.2"; sha256="17c7zww1160jxm0q6vb5h59zipjjfyc3pls30y5v4vyk7kr9rdvx"; depends=[assertthat BH fdrtool igraph knitr Matrix Rcpp RcppArmadillo]; }; beanplot = derive2 { name="beanplot"; version="1.2"; sha256="0wmkr704fl8kdxkjwmaxw2a2h5dwzfgsgpncnk2p2wd4768jknj9"; depends=[]; }; beanz = derive2 { name="beanz"; version="2.4"; sha256="18i4ygz83l60fdfkl4yg9kp5n2vmqn6yd7qkpkiplq0mzg5s4nk9"; depends=[BH loo Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; beast = derive2 { name="beast"; version="1.1"; sha256="0ikbnzdzp2lv1nh5mxxanra81v4dl6svg3ywqcqd6wgzri70a4ry"; depends=[RColorBrewer]; }; - beastier = derive2 { name="beastier"; version="2.1.1"; sha256="17qzjk4lq83khj5f04jhkr3q2w7snv4aq4zrbnsziszwnlazyqqy"; depends=[ape assertive beautier phangorn rappdirs remotes rJava stringr xml2]; }; + beastier = derive2 { name="beastier"; version="2.1.3"; sha256="1c7n4piai36dll4bpy5q0cv1x8qwqyaz8x9gg2m9rzwk9ask3aby"; depends=[ape assertive beautier phangorn pryr rappdirs remotes rJava stringr xml2]; }; beats = derive2 { name="beats"; version="0.1.1"; sha256="1vg8h2lyn61lii346pf3b5vwxf5cfswmi4b5mmimvgx1ix2i6sxb"; depends=[dplyr ggplot2 lubridate purrr readr shiny zoo]; }; - beautier = derive2 { name="beautier"; version="2.3.5"; sha256="12yiq8z95w69gch9kd15p8vvwx8i2q6gpgix5ih2h6x5g4gzl72a"; depends=[ape assertive pryr rappdirs seqinr stringr testit]; }; + beautier = derive2 { name="beautier"; version="2.3.7"; sha256="0fy77fqbz33rykn04130gam66hv9kbr8jw5ir4269g0cm09miv61"; depends=[ape assertive pryr rappdirs seqinr stringr testit]; }; bedr = derive2 { name="bedr"; version="1.0.7"; sha256="0zpqvyjgwyqawxm8qrhcv8zq2b3yxgcqkkc87br29yrl7sjb8h6j"; depends=[data_table R_utils testthat VennDiagram yaml]; }; beepr = derive2 { name="beepr"; version="1.3"; sha256="061sfld23b516jws4llml0a4jsdk4z74rll4z58l2rvahkqsdrfp"; depends=[audio stringr]; }; beeswarm = derive2 { name="beeswarm"; version="0.2.3"; sha256="0hy89bwv7jixlg91li1fywa77916am2whqp1m1fx1khd45g44581"; depends=[]; }; @@ -5483,33 +5631,36 @@ in with self; { behaviorchange = derive2 { name="behaviorchange"; version="0.2.2"; sha256="1xqvlybfmgpr0dg0ys6yjshlghgph6zg81d3bbx8cpbxdysm8lkl"; depends=[BiasedUrn data_tree DiagrammeR DiagrammeRsvg ggplot2 googlesheets gridExtra gtable magrittr png ufs viridis yum]; }; behavr = derive2 { name="behavr"; version="0.3.2"; sha256="01ny099m2zmvlalwiq3nqkgynnxn1mdspch15lkawwd40q8s9s4p"; depends=[data_table]; }; belex = derive2 { name="belex"; version="0.1.0"; sha256="1563yngc1lvncmx3h6kgsj1r6k3hvxidh6h9rb7apxs2rq5k32ms"; depends=[XML]; }; - belg = derive2 { name="belg"; version="1.0.2"; sha256="0daiqhpdwbl3l4civfq9v51hdgj9vams102fcb8n4v2qj83kx1wv"; depends=[raster Rcpp RcppArmadillo]; }; + belg = derive2 { name="belg"; version="1.4.0"; sha256="1ayk4ajk06bism934xclcikv4ccwr93l86zil63sy2739qypw706"; depends=[raster Rcpp RcppArmadillo]; }; + bellreg = derive2 { name="bellreg"; version="0.0.1"; sha256="17a0ac5ab9yblkl3cwv9vf1l6s027r34n4lqw9fs8bfs1inxbn9p"; depends=[BH extraDistr Formula magic MASS numbers Rcpp RcppEigen Rdpack rstan rstantools StanHeaders]; }; bench = derive2 { name="bench"; version="1.1.1"; sha256="1ldqmf0anwgw6b9jgy5mnnjjncayc1x54pvjm6f5gqv0225ksdw3"; depends=[glue pillar profmem rlang tibble]; }; benchden = derive2 { name="benchden"; version="1.0.5"; sha256="1cwcgcm660k8rc8cpd9sfpzz66r55b4f4hcjc0hznpml35015zla"; depends=[]; }; - benchmarkme = derive2 { name="benchmarkme"; version="1.0.3"; sha256="003d97rs0gb6l6hq7d4lxgdngrgb5lii6fxw2n7l50m14hib2sv2"; depends=[benchmarkmeData doParallel dplyr foreach httr Matrix tibble]; }; + benchmarkme = derive2 { name="benchmarkme"; version="1.0.4"; sha256="0yrmkpjpqdk8p4ih2xacjdg91ydw6hsmhd0r5w738bj89nb16ln9"; depends=[benchmarkmeData doParallel dplyr foreach httr Matrix tibble]; }; benchmarkmeData = derive2 { name="benchmarkmeData"; version="1.0.4"; sha256="1n4vjkagqlm6kw2hilf4gjfcdjad0bcg652j9nl2ygbq3kdnh1vf"; depends=[dplyr tibble]; }; benchr = derive2 { name="benchr"; version="0.2.5"; sha256="1xh1n41ll50zz3v26i8lg5f92i90rc78ywnl0rczryh621whx80n"; depends=[Rcpp RcppProgress]; }; bender = derive2 { name="bender"; version="0.1.1"; sha256="07npksrj094h884lli0fjvwjc1lhcwzlsk9wx82761mka5xajv4v"; depends=[httr jsonlite R6]; }; benford_analysis = derive2 { name="benford.analysis"; version="0.1.5"; sha256="0y0c7l2r9s7lg9bw4ndcqwisa5l6a2cpydn1vmz88h3yva0l68cg"; depends=[data_table]; }; bentcableAR = derive2 { name="bentcableAR"; version="0.3.0"; sha256="1gjrlv94av9955jqhicaiqm36rrgmy0avxn9y7wbp2s1sbg7fyg7"; depends=[]; }; benthos = derive2 { name="benthos"; version="1.3-6"; sha256="1vywnc6k37gpaq7g59v3qa6619svcmnd8ri5zm5l0ila2s3ccb2c"; depends=[dplyr lazyeval readr]; }; - berryFunctions = derive2 { name="berryFunctions"; version="1.18.2"; sha256="0yicwsz6v5nffvw2wmjmc2zhcik7avz3xmj8zhb77xhaq9dazk9s"; depends=[abind]; }; - bestNormalize = derive2 { name="bestNormalize"; version="1.5.0"; sha256="0af21qxrz1jvkva8lz72h6c2xc5ha0rwiv253b4n1m8w27z39d7h"; depends=[doParallel doRNG dplyr foreach LambertW nortest recipes tibble]; }; + berryFunctions = derive2 { name="berryFunctions"; version="1.19.1"; sha256="1kzvwg2yjhxcy08jvwfp0c3jl7i8kngxkbfxl9hf2pwybszvdfh9"; depends=[abind]; }; + bestNormalize = derive2 { name="bestNormalize"; version="1.6.1"; sha256="1bnsjzj3s8kxlhbbz6bqa2bm02kkga1w02isnhx5nq16jw4ir0yq"; depends=[doParallel doRNG dplyr foreach LambertW nortest recipes tibble]; }; bestSDP = derive2 { name="bestSDP"; version="0.1.2"; sha256="1rff6jij9wmlpalzilvid8jvj2pczrchx0yrg0vhy00j64zg6jzs"; depends=[dplyr DT ggplot2 readxl rlist shiny shinyBS shinydashboard shinyjs shinythemes shinyWidgets stringr tidyr]; }; bestglm = derive2 { name="bestglm"; version="0.37.3"; sha256="1zncy958hlwyyxrp6yvq1inq6mpyrbr6cdkf8maijfirr5j8f0ya"; depends=[glmnet grpreg lattice leaps pls]; }; betaboost = derive2 { name="betaboost"; version="1.0.1"; sha256="1zdyzxl2kp2i5lkiz280wz4av9wqklbn25zmq6n4yb6a579yjfn8"; depends=[gamboostLSS mboost]; }; betacal = derive2 { name="betacal"; version="0.1.0"; sha256="19wgpgf9yhckl9qx9v24f4yh055wfalphcxwm7lg68px6ap2pxl9"; depends=[]; }; betafam = derive2 { name="betafam"; version="1.0"; sha256="1nf5509alqnr5qpva36f1wb7rdnc084p170h91jv89xvzsidqxca"; depends=[]; }; + betafunctions = derive2 { name="betafunctions"; version="1.2.0"; sha256="0jz5cxbi1zd9y7xvazlanwp2pj6j9msdbby1n1nxrbbzix65ks6z"; depends=[]; }; betalink = derive2 { name="betalink"; version="2.2.1"; sha256="1wskr8nh1jzcrnc8fn58lscphsvj5z9p1i1pnpfdjn60mdb09rkp"; depends=[igraph plyr stringr]; }; betapart = derive2 { name="betapart"; version="1.5.1"; sha256="0j72rfvnn0ag6vxp8nw5v68n3qblyp5gd0y8z1kchs4dbq1v288g"; depends=[ape fastmatch geometry picante rcdd]; }; betaper = derive2 { name="betaper"; version="1.1-1"; sha256="0ids2k783lrrf376nfccflzp3alrq15ym484ixjcnxxz84ncmmcl"; depends=[vegan]; }; betareg = derive2 { name="betareg"; version="3.1-3"; sha256="0ik2qydr75dwaphw35l1myi50fbkw43zmkarrw8jsj8nqmz3h6fc"; depends=[flexmix Formula lmtest modeltools sandwich]; }; betategarch = derive2 { name="betategarch"; version="3.3"; sha256="0hqvyps3lwix2fkzk18wrkhxpqhgardvib9sq1ip8gn8sn1dsi8y"; depends=[zoo]; }; bethel = derive2 { name="bethel"; version="0.2"; sha256="1zlkw672k1c5px47bpa2vk3w2906vkhvifz20h6xm7s51gmm64i0"; depends=[]; }; + bets_covid19 = derive2 { name="bets.covid19"; version="1.0.0"; sha256="1pqa6zpkkcmnm9a4m3676css0fi2lp4ik6mmhfhnsr4v4kv2pq2s"; depends=[rootSolve]; }; beyondWhittle = derive2 { name="beyondWhittle"; version="1.1.1"; sha256="1nr414wvfwycp3s9v592jd4gk5wdjfklk7ypqabx73k5fsxrcc0g"; depends=[BH forecast ltsa MASS MTS Rcpp RcppArmadillo]; }; bezier = derive2 { name="bezier"; version="1.1.2"; sha256="1vw5128v8h973xwa1fdm9cw2jvrldj87nd55lddlp3qsz3ag4br6"; depends=[]; }; bfast = derive2 { name="bfast"; version="1.5.7"; sha256="0n75minka55rxpvs3qkj0c65ydn1gc3i8lkr2gdyn1adjkl5yn01"; depends=[forecast raster sp strucchange zoo]; }; - bfp = derive2 { name="bfp"; version="0.0-40"; sha256="03risiq2b7bc3gwlgpcsy1gvja6n5w1j3kw13s2wrd420hddzk4s"; depends=[Rcpp]; }; + bfp = derive2 { name="bfp"; version="0.0-41"; sha256="0v3fcsg9lq6j18igvknmlws9m4mp0xh3k3y01ghk85zpzikby2r3"; depends=[Rcpp]; }; bfsMaps = derive2 { name="bfsMaps"; version="0.9.4"; sha256="0pb081kpmf7040r99szhg7ppvb21cvc9k9bq6lhglinb8wxad9g8"; depends=[DescTools maptools rgdal rlang sp spdep]; }; bfsl = derive2 { name="bfsl"; version="0.1.0"; sha256="1hl53nis8bb1ffgkx91ij9vh680cpkb80y548y67y9w18iyd4aw4"; depends=[]; }; bfw = derive2 { name="bfw"; version="0.4.1"; sha256="1dwl6p70wbgippysl7vk8nv6rc78f6h5xl8fna98zv99qf0ib31c"; depends=[coda MASS runjags]; }; @@ -5522,54 +5673,54 @@ in with self; { bhpm = derive2 { name="bhpm"; version="1.7"; sha256="0fhk2gmghibf7la864dzm19bm76525gzbj03vw0y0zwbv9shbpcp"; depends=[coda]; }; biasbetareg = derive2 { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; }; bib2df = derive2 { name="bib2df"; version="1.1.1"; sha256="0d57883df774qqwpssmly3f1gci32yc5sgwc3x8f2rjih23s1nf6"; depends=[dplyr httr humaniformat stringr]; }; - bibliometrix = derive2 { name="bibliometrix"; version="3.0.0"; sha256="0nblrda78xrvm36v0xmgfm3wgwmmwnzwprw1bgzh8sr2w72cc0ym"; depends=[dimensionsR dplyr DT factoextra FactoMineR ggplot2 ggraph ggrepel igraph Matrix networkD3 pubmedR RColorBrewer rio rscopus shiny shinycssloaders shinythemes SnowballC stringdist stringr tidyr]; }; + bibliometrix = derive2 { name="bibliometrix"; version="3.0.2"; sha256="0xf7c31a24mvpzhv6a3byib117b9wzrvkn3fp92kyqv7xqqnh34l"; depends=[dimensionsR dplyr DT factoextra FactoMineR ggplot2 ggraph ggrepel igraph Matrix networkD3 pubmedR RColorBrewer rio rscopus shiny shinycssloaders shinythemes SnowballC stringdist stringr tidyr]; }; bibtex = derive2 { name="bibtex"; version="0.4.2.2"; sha256="140hkjzdp3033cvji861rd06z1ixgpnn4n5amygqsmhnixk8ff07"; depends=[stringr]; }; biclique = derive2 { name="biclique"; version="1.0.5"; sha256="1fdf2r1jc2x8yw0fcw7yyjdxz4b870w6y7mr68qixqxwpl6943zq"; depends=[]; }; biclust = derive2 { name="biclust"; version="2.0.2"; sha256="1pk7mvwlg4hkc4cn4w6wr2c192qx03d1xfwlzclk5bw1nmcg483b"; depends=[additivityTests colorspace flexclust ggplot2 lattice MASS tidyr]; }; biclustermd = derive2 { name="biclustermd"; version="0.2.2"; sha256="00d7lhkcr9bj45zwpm78hdp3qllfisx097dsql3g64v9ix2q44g5"; depends=[biclust clusteval doParallel dplyr foreach ggplot2 magrittr nycflights13 phyclust tidyr]; }; bife = derive2 { name="bife"; version="0.7"; sha256="04wnc6n3wcykzmhrnd2zkj507ymzbw1n8wssi3bwcylanzj59a3h"; depends=[data_table Formula Rcpp RcppArmadillo]; }; bigGP = derive2 { name="bigGP"; version="0.1-6"; sha256="0fwm06rzx1qbh16ii93x26i4v4yb50jk67k3qmzyr3gr4z9b9xhg"; depends=[Rmpi]; }; - bigMap = derive2 { name="bigMap"; version="2.1.0"; sha256="0bpnzz3acqn006jk8db5yyvbhl3sq807926igjcxj813i3r0x98r"; depends=[BH bigmemory colorspace RColorBrewer Rcpp RcppArmadillo]; }; + bigMap = derive2 { name="bigMap"; version="2.3.1"; sha256="08c9s5sk672j70d6pnva7z52i4s3knkby06lva9al9n8a3jiwsvz"; depends=[BH bigmemory colorspace RColorBrewer Rcpp RcppArmadillo]; }; bigQueryR = derive2 { name="bigQueryR"; version="0.5.0"; sha256="051c8rkj77dm78237dzhf3lcdawv0xv72pwfiim9bi89z9mp6f9m"; depends=[assertthat googleAuthR googleCloudStorageR httr jsonlite]; }; bigReg = derive2 { name="bigReg"; version="0.1.2"; sha256="1hmvh5j40zpzz6c88hmikphps8rb741yvkg60dxmkfl8gxqsrp3w"; depends=[MASS Rcpp RcppArmadillo uuid]; }; - biganalytics = derive2 { name="biganalytics"; version="1.1.14"; sha256="1hsqdg5hkhs6z9pwvn055q02hzpksjwrf33q5zdnkm387g188ca6"; depends=[BH biglm bigmemory foreach Rcpp]; }; + biganalytics = derive2 { name="biganalytics"; version="1.1.21"; sha256="19drir6vclzz1ffccvnkxnmiqnwmddiqm7y64pz4j6ifxpc1igfy"; depends=[BH biglm bigmemory foreach Rcpp]; }; bigassertr = derive2 { name="bigassertr"; version="0.1.3"; sha256="1f0abvsixdkrr8nfm0knby69j0pac4srlg8nlsmrymz6nzcf82d9"; depends=[]; }; - bigchess = derive2 { name="bigchess"; version="1.7.1"; sha256="1h8i8qmnr9030xr8ld4rk7v6zpxbirw09i71imrrja6lsxr7v3qn"; depends=[ff ffbase processx RSQLite]; }; + bigchess = derive2 { name="bigchess"; version="1.9.1"; sha256="1vdzx185y1agh1xjf7qcfi2s6l7qzm1kx6b2kr3cbz2in88bws3n"; depends=[processx]; }; bigdatadist = derive2 { name="bigdatadist"; version="1.1"; sha256="16gkybwcp9sxqb0iic2fhmc4gndr44ayg14wrfcjvjaj4g5r6xs2"; depends=[FNN MASS pdist rrcov]; }; bigdist = derive2 { name="bigdist"; version="0.1.4"; sha256="1qfnmhyfadmnnagbhdl4jjrb53i1srszf19idp8fy6bczbjq85yi"; depends=[assertthat bigstatsr furrr proxy]; }; biglasso = derive2 { name="biglasso"; version="1.3-7"; sha256="1s9l8n0a3nv6viyp62k890nhdpfh8jl1ahhsa51x7bx2agdqplhi"; depends=[BH bigmemory Matrix ncvreg Rcpp RcppArmadillo]; }; bigleaf = derive2 { name="bigleaf"; version="0.7.1"; sha256="0hsssz5973vapkmmh9dgzrijyjj1s75iarq3cpfi7ljm4n748qig"; depends=[robustbase solartime]; }; - biglm = derive2 { name="biglm"; version="0.9-1"; sha256="1z7h4by457z93k5i6qf5rq7xmd1y2kcd1rq4pv465cd32d4mb2g1"; depends=[DBI]; }; - biglmm = derive2 { name="biglmm"; version="0.9-1"; sha256="1f4w59jvq7lq0bh5fs41czw0yc8h56iijbj0hlcq47zyqx6gll9a"; depends=[DBI]; }; + biglm = derive2 { name="biglm"; version="0.9-2"; sha256="03chwwhnrassz2aqcx2pjzmsl8k1nfi704f9cl6p719k8s0iqhwv"; depends=[DBI]; }; + biglmm = derive2 { name="biglmm"; version="0.9-2"; sha256="1zj1h2hszps3w913j2dk4cyj5jsqkkxsm3pcjlc4jnq810j100l6"; depends=[DBI]; }; bigmatch = derive2 { name="bigmatch"; version="0.6.2"; sha256="16nmc0n78gzk8x8jhxdilj47gjqqv46sgiivccn5zkv08k1h3jj2"; depends=[liqueueR mvnfast plyr rcbalance]; }; bigmemory = derive2 { name="bigmemory"; version="4.5.36"; sha256="03pg8mxdc7q0249visjmc8bc3xmwxsfg3i2n6higicj4cfz7zihq"; depends=[BH bigmemory_sri Rcpp]; }; bigmemory_sri = derive2 { name="bigmemory.sri"; version="0.1.3"; sha256="0mg14ilwdkd64q2ri9jdwnk7mp55dqim7xfifrs65sdsv1934h2m"; depends=[]; }; bigparallelr = derive2 { name="bigparallelr"; version="0.2.3"; sha256="1xg48zbwhchclc6lc67hc3j1d0b7cajd4whspj68ipm38w8h7l23"; depends=[bigassertr doParallel flock foreach RhpcBLASctl]; }; bigreadr = derive2 { name="bigreadr"; version="0.2.0"; sha256="0d5fgs16kdsl23jqrgz7in63pwhh7bvj7m8pa8nj11v84ji6lagr"; depends=[bigassertr data_table Rcpp]; }; - bigrquery = derive2 { name="bigrquery"; version="1.2.0"; sha256="1ggh2gngr5x0g6y7d55y6kvn94anf7qi1bkc28cjmw61hxjq38fb"; depends=[assertthat bit64 curl DBI gargle glue httr jsonlite prettyunits progress rapidjsonr Rcpp rlang tibble]; }; - bigsnpr = derive2 { name="bigsnpr"; version="1.3.0"; sha256="1021nxqpl018ph2np50n02szjdlwc71r6yx5sbszd8dxbpb0hfjn"; depends=[bigassertr bigparallelr bigreadr bigstatsr bigutilsr data_table foreach ggplot2 magrittr Matrix Rcpp RcppArmadillo rmio]; }; - bigsparser = derive2 { name="bigsparser"; version="0.1.0"; sha256="1f02hpdw2r6r4sqm16qz1rz0yz8rr42jlhnmigf0kqxvx5r9mwss"; depends=[bigassertr Rcpp rmio]; }; + bigrquery = derive2 { name="bigrquery"; version="1.3.1"; sha256="0mq03sqv5lkyn3dlxvyd6lqqwnryfdaqh05pjvngzp194fxmd9cy"; depends=[assertthat bit64 curl DBI gargle glue httr jsonlite prettyunits progress rapidjsonr Rcpp rlang tibble]; }; + bigsnpr = derive2 { name="bigsnpr"; version="1.4.4"; sha256="0khdhbfi4q7s1kvmhfsn1wh4rq6c1lqrfjn3rj9iavka5d77wk5r"; depends=[bigassertr bigparallelr bigreadr bigsparser bigstatsr bigutilsr data_table foreach ggplot2 magrittr Matrix Rcpp RcppArmadillo rmio]; }; + bigsparser = derive2 { name="bigsparser"; version="0.3.1"; sha256="10hhgjzi1dq6hxl0b2wpwk6agmqph5rb2nqfxf6gdbq9406ms0g1"; depends=[bigassertr Rcpp RcppEigen rmio]; }; bigsplines = derive2 { name="bigsplines"; version="1.1-1"; sha256="1kf04p2lglzdi1fdryk27nmj2a2jca2ii7ki8vak93sq21isb179"; depends=[quadprog]; }; bigstatsr = derive2 { name="bigstatsr"; version="1.2.3"; sha256="0386hrfjsdnm5ns9kkym8nhzfadcn0shdr3yj77051lwxfngdmbx"; depends=[bigassertr bigparallelr cowplot foreach ggplot2 Rcpp RcppArmadillo rmio RSpectra tibble]; }; bigstep = derive2 { name="bigstep"; version="1.0.3"; sha256="0ygp1vljqqn5vzpjxlv9d6fxxv3bi2kfyqfs1gf0jgxwb9417b82"; depends=[bigmemory magrittr matrixStats R_utils RcppEigen speedglm]; }; bigtabulate = derive2 { name="bigtabulate"; version="1.1.5"; sha256="1jvp3m0ms2cav9z8vvhh80gsa0kvc351brv2jq99rxv1mwvpa4xj"; depends=[BH biganalytics bigmemory Rcpp]; }; bigtcr = derive2 { name="bigtcr"; version="1.1"; sha256="1l03yc28afdm7glbw4ay0zsywjgqg5l90qz1hfhslsy8gg7d5wq5"; depends=[]; }; bigtime = derive2 { name="bigtime"; version="0.1.0"; sha256="136gy2i4qwa2drklllyzp3z0dbijlavgf3sxy73bf84df2yq1c9i"; depends=[corrplot lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; - bigutilsr = derive2 { name="bigutilsr"; version="0.3.0"; sha256="0fjmczbfap20y39vaym01wxl0c4vckqxgjkki9z1s66rglxr6zg9"; depends=[bigassertr bigparallelr nabor Rcpp robustbase RSpectra]; }; + bigutilsr = derive2 { name="bigutilsr"; version="0.3.2"; sha256="1is0iy4lwx4zbiwbkg9dpkiddjsfp3bgh124k3khfrzn61zldv8i"; depends=[bigassertr bigparallelr nabor Rcpp robustbase RSpectra]; }; bikeshare14 = derive2 { name="bikeshare14"; version="0.1.2"; sha256="1sib83driqv9k4aa131nw3xasslrxvnxkn3mr8kxycxccky025n9"; depends=[]; }; bikm1 = derive2 { name="bikm1"; version="1.0.0"; sha256="1pj41d59n3iflwc4iwnwv6g2vhjs9498k85cml7jwb814xpl9jsj"; depends=[ade4 ggplot2 gtools pracma reshape2]; }; bild = derive2 { name="bild"; version="1.2-0"; sha256="0aygx77fn2w249q6ghpxclhm9xb2ngdzrirldr3lpidg6ivc443v"; depends=[]; }; billboard = derive2 { name="billboard"; version="0.1.0"; sha256="1z3y8dijhc1381y91n5zq305xzm1gpvs0g4mdpfr7zrblpa8ws39"; depends=[tibble]; }; billboarder = derive2 { name="billboarder"; version="0.2.8"; sha256="1n51xildr8h3fqm3yhalgvq6pwlpzbcv230jg7skp8147wmwcmi7"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr scales shiny]; }; bimetallic = derive2 { name="bimetallic"; version="1.0"; sha256="181qi4dr0zc7x6wziq7jdc1his20jmprfpq3hrfm56fr5n1sj8wl"; depends=[]; }; - bimets = derive2 { name="bimets"; version="1.4.3"; sha256="00gbfjp4gshc5izbjlzsc6vib1rfkilbwd89xc4fn51z1hfsvpzl"; depends=[xts zoo]; }; + bimets = derive2 { name="bimets"; version="1.5.1"; sha256="0icjjcb4hslnzv1gn111q4lqaic2dcak35hy73a9svqkrhgw6kgf"; depends=[xts zoo]; }; bimixt = derive2 { name="bimixt"; version="1.0"; sha256="0nhszpzjqy8z3vngl5jdzqxzshnn92wgi0ci5n3n5kzi24xkfrzc"; depends=[pROC]; }; binGroup = derive2 { name="binGroup"; version="2.2-1"; sha256="0cb7j6b0s3y56mv1967awwri0kv0rf3sr3vwf9gc2zbjggxi9ffp"; depends=[partitions Rdpack]; }; binGroup2 = derive2 { name="binGroup2"; version="1.0.2"; sha256="025b087av8zqn7i0ggfdzkkckqql4pc12z4h4r4bw8la2krcdw3z"; depends=[partitions rBeta2009 Rcpp RcppArmadillo Rdpack]; }; binMto = derive2 { name="binMto"; version="0.0-7"; sha256="0rg9rsdy14jx7zjv60krcz1vh0sxqimsai0wynhx2sx0kydw4ngy"; depends=[mvtnorm]; }; binaryGP = derive2 { name="binaryGP"; version="0.2"; sha256="0i4xi0gxk0lamjdygyx0azdp3kfqmva1g20nl3p65w4yx77m88d6"; depends=[GPfit lhs logitnorm nloptr Rcpp RcppArmadillo]; }; binaryLogic = derive2 { name="binaryLogic"; version="0.3.9"; sha256="19ig9qgjjnivfihjy41pc13qlrb95679mmk4zks5lbbri8qi4qxj"; depends=[]; }; - binb = derive2 { name="binb"; version="0.0.5"; sha256="1xr3y8ynz1j5hxbphnw44n0k99x66da0mibqn7kby8whqq2398ki"; depends=[knitr rmarkdown]; }; + binb = derive2 { name="binb"; version="0.0.6"; sha256="0j9iyawkn1mqvf52q1abp0k00r5239rkvvmvl3cmp4jlffxd4xd7"; depends=[knitr rmarkdown]; }; binda = derive2 { name="binda"; version="1.0.3"; sha256="15rhxnlif7agblzd09gyllkqkf5d8cc75b4vmp7grx8a6y7w47g0"; depends=[entropy]; }; bindata = derive2 { name="bindata"; version="0.9-19"; sha256="15ya21fz1kvq4qsppkn9ypiqvaq8q4vszdcgcymampa7zc07z2ld"; depends=[e1071 mvtnorm]; }; bindr = derive2 { name="bindr"; version="0.1.1"; sha256="1l05fpk2yql3jka321c0bdgx6mqq9pvfrg2844lbjfpbgjkmqy3w"; depends=[]; }; @@ -5579,7 +5730,6 @@ in with self; { bingat = derive2 { name="bingat"; version="1.3"; sha256="1y68rgafipfad78yrzcygdszgy1d5q739kap06pzr78bn3i8hiwa"; depends=[doParallel foreach gplots matrixStats network vegan]; }; binhf = derive2 { name="binhf"; version="1.0-3"; sha256="1vdw2s8zddp7gad8l3c4jpmnjcc0f5wpqbrp6gp9lgp1c3qa505y"; depends=[adlift EbayesThresh wavethresh]; }; binman = derive2 { name="binman"; version="0.1.1"; sha256="0hm0h285p4v9lhrqjy8s22f1s1vmfpfla5iaycpj8vw3qb3632az"; depends=[assertthat httr jsonlite rappdirs semver xml2 yaml]; }; - binmapr = derive2 { name="binmapr"; version="0.1.3"; sha256="00vaj70zjjprgyhf7zqwcbrxlgh9sj4yskba2s3i82z7k8bvn1kh"; depends=[vcfR]; }; binnednp = derive2 { name="binnednp"; version="0.4.0"; sha256="1qswrr982x5hy2vl2fc603j98cjli9l40zzvvjy2l91p8xxrc5dn"; depends=[doParallel fitdistrplus foreach kedd mclust nor1mix Rcpp Rdpack]; }; binom = derive2 { name="binom"; version="1.1-1"; sha256="0mjj92dqf5q69jxzqya4izb1mly3mkydbnmlm4wb3zqqg82a324c"; depends=[]; }; binomSamSize = derive2 { name="binomSamSize"; version="0.1-5"; sha256="1an6dcqsjh5r0w4kc3n6yfvvha5qhrb2i4bpf7g5ykhl3i60zfcc"; depends=[binom]; }; @@ -5599,19 +5749,22 @@ in with self; { bioC_logs = derive2 { name="bioC.logs"; version="1.1"; sha256="18v8hj426vdfz30jifhd17fv65w5nv0f55ff9r8s2ahi6qv3w828"; depends=[]; }; bioOED = derive2 { name="bioOED"; version="0.2.1"; sha256="0wx58bngpzlrbbcnx8l1lqhsg51y98wcym1238p87drf64x2mj1n"; depends=[bioinactivation corrplot dplyr FME ggplot2 MEIGOR rlang tidyr tidyselect tidyverse]; }; bioPN = derive2 { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; }; - bioRad = derive2 { name="bioRad"; version="0.5.1"; sha256="0vkq7dsmqsxdghs6g55iv9wcnjw0qs50djswjscn0yz3gyl95w6x"; depends=[assertthat curl fields ggmap ggplot2 maptools raster rgdal rhdf5 sp tidyr viridis viridisLite]; }; - bioacoustics = derive2 { name="bioacoustics"; version="0.2.2"; sha256="13m5w888fap7nxn3pwimi04zdp848n20ha01v7gkzdkchdnbbchb"; depends=[htmltools moments Rcpp stringr tuneR]; }; + bioRad = derive2 { name="bioRad"; version="0.5.2"; sha256="1kx1vh6p37170f1crylwyzap0c7s5d82rx7qqi95f8d26niqcjn9"; depends=[assertthat curl data_table fields ggmap ggplot2 lubridate lutz maptools raster rgdal rhdf5 sp tidyr viridis viridisLite]; }; + bioacoustics = derive2 { name="bioacoustics"; version="0.2.4"; sha256="003z6vd19a62mdfzkkpvhfn42c7lws2863nxvfl9hbqcx0zbq7gn"; depends=[htmltools moments Rcpp stringr tuneR]; }; + bioassays = derive2 { name="bioassays"; version="0.1.0"; sha256="0vsh079hh9w571aki90bhj0clkjknv4zm795hcwgh9grn6h45qrl"; depends=[dplyr ggplot2 magrittr nplr reshape2 rlang]; }; biocompute = derive2 { name="biocompute"; version="1.0.3"; sha256="1c23yd0vhar1hvzskr7h6g3a78mcrwminm2pkdmc9qlpy8s8smvv"; depends=[cli crayon curl digest httr jsonlite jsonvalidate magrittr rmarkdown stringr uuid yaml]; }; biogas = derive2 { name="biogas"; version="1.23.2"; sha256="05g6nyi872skvr34kw5c71ggnnjc3fv95imc327yjqhmqmwx3m19"; depends=[]; }; biogeo = derive2 { name="biogeo"; version="1.0"; sha256="14sqgg8b06gp5dajxvyj9s3ndsk7jpkfr0mkyl2l61kgp6qx53rh"; depends=[maptools raster sp stringr vegan]; }; biogram = derive2 { name="biogram"; version="1.6.3"; sha256="1y7yaa6xwv11b6a4qf4qb3d7rsz0yiiq1k5mb0dbm3avydnl9c4b"; depends=[combinat entropy partitions slam]; }; - bioimagetools = derive2 { name="bioimagetools"; version="1.1.4"; sha256="078xqgq4bgphzflfajxnyfxrmhs28224abby0fq5q9bh1hngkn58"; depends=[EBImage httr tiff]; }; + bioimagetools = derive2 { name="bioimagetools"; version="1.1.5"; sha256="1qscyfm7mx9v9ag3hdyyvn7vwnfvms9dc1qffbyby9fr9rj3gs3q"; depends=[EBImage httr tiff]; }; bioinactivation = derive2 { name="bioinactivation"; version="1.2.3"; sha256="0gz1bbakf6b23jsbvrr8314yxajxcr1akm5srgm883lrf1p5ax13"; depends=[deSolve dplyr FME ggplot2 lazyeval MASS purrr rlang]; }; biolink = derive2 { name="biolink"; version="0.1.6"; sha256="1szsplhzrn660aw442ad73rwhmyqjwqq6faaz4bw86khsvxh993y"; depends=[DBI glue memoise rentrez RMySQL xml2]; }; biomartr = derive2 { name="biomartr"; version="0.9.2"; sha256="12bw15hvjg7fbrq1mwn2xgzbplydy8rlq982hs118mlwdrlqb06q"; depends=[biomaRt Biostrings curl data_table downloader dplyr fs httr jsonlite philentropy purrr R_utils RCurl readr stringr tibble XML]; }; biomod2 = derive2 { name="biomod2"; version="3.4.6"; sha256="0nvxg0a78ynydx3wd16vaildw9x4hiagmx4wkrwkzbyhyi2pgza1"; depends=[abind caret checkmate dismo doParallel dplyr earth ENMeval foreach gbm ggplot2 lattice MASS maxnet mda nnet PresenceAbsence pROC purrr randomForest raster rasterVis reshape rlang rpart sp tidyr]; }; bionetdata = derive2 { name="bionetdata"; version="1.0.1"; sha256="1l362zxgcvxln47b1vc46ad6ww8ibwhqr2myxnz1dnk2a8nj7r2q"; depends=[]; }; + biorxivr = derive2 { name="biorxivr"; version="1.0.2"; sha256="10fwppflk2ri5qah1vp3q835g0299nkxz8x94xhfazbjikrxqan4"; depends=[RCurl XML]; }; bios2mds = derive2 { name="bios2mds"; version="1.2.3"; sha256="1k0r3fnkzfczx3wp3m8zpndk6gxca7idsp0z13rw84zjrgqaw6jm"; depends=[amap cluster e1071 rgl scales]; }; + bioseq = derive2 { name="bioseq"; version="0.1.1"; sha256="02dmb8c6izy27m5by2mps5wb85nnii0jzv4vpz63pays06qw9276"; depends=[ape crayon dplyr pillar readr rlang stringr tibble vctrs]; }; bioset = derive2 { name="bioset"; version="0.2.3"; sha256="15vchim8cim42j1if0jars696rh50vmbggr9748q321f6ngm1w1i"; depends=[dplyr magrittr rlang tibble tidyr]; }; biosignalEMG = derive2 { name="biosignalEMG"; version="2.1.0"; sha256="0bbkrfqkmks4z8c7rh0k43lvm71vn3fzrw3kpj012ym77whwkvay"; depends=[signal]; }; biospear = derive2 { name="biospear"; version="1.0.2"; sha256="10y4hbncwiqpxzqvzjrmfgp804zczdgvwpjcj0dzaa0sx1njdzja"; depends=[cobs corpcor devtools glmnet grplasso MASS Matrix mboost pkgconfig plsRcox pROC PRROC RCurl survAUC survival]; }; @@ -5625,13 +5778,14 @@ in with self; { birdring = derive2 { name="birdring"; version="1.4"; sha256="0rskrf0r5nrzfcac0zvc60vabvs9dws2zx1rxssvw6xmwyiiy1z6"; depends=[geosphere ks lazyData raster rgdal rgeos rworldmap rworldxtra sp]; }; birk = derive2 { name="birk"; version="2.1.2"; sha256="07ck59m5mw897a60vmdn1b3qrmqj20qpfsn3093haqbpn8z13dmn"; depends=[]; }; birtr = derive2 { name="birtr"; version="1.0.0"; sha256="0bcxvj30wzwclw1lcyhvwj3k7awd39lrvzia1nrg53hw90bfs811"; depends=[]; }; - biscale = derive2 { name="biscale"; version="0.1.2"; sha256="1m7b1sjqngcfqc5z1b10i3s9m6lml2jiw6ab5dk9dr01i4yw0nhw"; depends=[classInt dplyr ggplot2 glue rlang tidyr]; }; + biscale = derive2 { name="biscale"; version="0.2.0"; sha256="0z37abiracbgdzb6351fp5ss64ja9psy2yqsvvpl7fncc0f3i6r0"; depends=[classInt dplyr ggplot2 glue rlang sf tidyr]; }; bisect = derive2 { name="bisect"; version="0.9.0"; sha256="1dr95gnc9rb3i8603wspf0hznmvk5akk46nyf1bhv88mjz2i5q77"; depends=[]; }; bisectr = derive2 { name="bisectr"; version="0.1.0"; sha256="1vjsjshvzj66qqzg32rviklqswrb00jyq6vwrywg1hpqhf4kisv7"; depends=[devtools]; }; bisque = derive2 { name="bisque"; version="1.0.2"; sha256="0zp2r1vg29q2ds34hhyjv9pz761mi0qncx9p4ilwnfd5yj9pmzwq"; depends=[foreach itertools mvQuad Rcpp RcppArmadillo RcppEigen]; }; - bit = derive2 { name="bit"; version="1.1-15.2"; sha256="12xjkkkmflkz8s435by4r23b57cz7z67z84907f6qg99hn1yg0qb"; depends=[]; }; - bit64 = derive2 { name="bit64"; version="0.9-7"; sha256="07znvz9vp1nz1y5ljng4qyskvm943cdbmy996s67560ijxzsm6kv"; depends=[bit]; }; + bit = derive2 { name="bit"; version="4.0.4"; sha256="0s7isadibxp2wr62r5cpbyh9z31sczzfz4j3rm7gxgjfpqgq8174"; depends=[]; }; + bit64 = derive2 { name="bit64"; version="4.0.2"; sha256="1yrwvgvxdlsa8y42l05vy173qndlqkwfk6mp2zrqwm8l7c7p79g9"; depends=[bit]; }; bite = derive2 { name="bite"; version="0.3"; sha256="00sph3pdbb9p21s3263ni4by2ivvya1sbjm9wvwx1rwjr4f31jps"; depends=[ape coda MASS phytools sm vioplot xml2]; }; + bitmexr = derive2 { name="bitmexr"; version="0.3.1"; sha256="1h4fdh88b8j1p6hxabwf2v1wm8wnqzpl67hh15pjky2hhczfds05"; depends=[attempt curl digest dplyr httr jsonlite lubridate magrittr progress purrr rlang stringr]; }; bitops = derive2 { name="bitops"; version="1.0-6"; sha256="176nr5wpnkavn5z0yy9f7d47l37ndnn2w3gv854xav8nnybi6wwv"; depends=[]; }; bitsqueezr = derive2 { name="bitsqueezr"; version="0.1.1"; sha256="0dy180r9cclq46mh0fzc68p5zm9x2z5pa8ajgsk7qycdkyw5v829"; depends=[]; }; biva = derive2 { name="biva"; version="0.1.0"; sha256="1vppvk2n60hhi7p8y8rdyckmh4yk70wqyhbg7rbgh833s66whypw"; depends=[corrgram rpivotTable shiny shinyAce]; }; @@ -5648,12 +5802,14 @@ in with self; { blackbox = derive2 { name="blackbox"; version="1.1.32"; sha256="180y19ls0vdk98smhs9hxpcwg3hwpl62d19zdiml38bjlxmr0kav"; depends=[foreach geometry lattice MASS nloptr numDeriv pbapply proxy rcdd Rcpp RcppEigen spaMM]; }; blaise = derive2 { name="blaise"; version="1.3.4"; sha256="14jk62sw4xs0yip8gh1w2795l8p0ybv83c24ijizxymg16h7i9g7"; depends=[dplyr readr stringr tibble]; }; blandr = derive2 { name="blandr"; version="0.5.1"; sha256="1rqas71hlf000b3z824d8ljshf8bx91bbrzaxxnx5n3chv19w6z6"; depends=[ggplot2 jmvcore knitr R6 rmarkdown stringr]; }; - blastula = derive2 { name="blastula"; version="0.3.1"; sha256="0vanb8ghzskicnk7gw7mw67790lw953jf3jgyyhd71qdgz6wjli7"; depends=[base64enc commonmark curl dplyr fs getPass here htmltools httr jsonlite magrittr mime rlang rmarkdown stringr uuid]; }; - blavaan = derive2 { name="blavaan"; version="0.3-9"; sha256="1a79hvpn1ynd28wj137dmqq6gjxdl7x3ml1mx111vrdlbw8whdmv"; depends=[bayesplot BH coda future_apply lavaan loo MCMCpack mnormt nonnest2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; + blapsr = derive2 { name="blapsr"; version="0.5.1"; sha256="0qlyc9k02w8csi9zjdm03ba2i54fc6g0qq0gammh93vdpg772ykx"; depends=[coda MASS Matrix RSpectra sn survival]; }; + blastula = derive2 { name="blastula"; version="0.3.2"; sha256="084mk6xb8ivqrp8anvisfk8rvwi7qfrp5kmy66vpihmjmqh7dkyc"; depends=[base64enc commonmark curl digest dplyr fs getPass here htmltools httr jsonlite magrittr mime rlang rmarkdown stringr uuid]; }; + blavaan = derive2 { name="blavaan"; version="0.3-10"; sha256="0b96rm5w0n0dm2fk3vak8cw4lxzwysicfcrhw63y9xr1ab088zs5"; depends=[bayesplot BH coda future_apply lavaan loo MCMCpack mnormt nonnest2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; blendedLink = derive2 { name="blendedLink"; version="1.0"; sha256="19d1pnjag89jjvkl5a6wx531qjqp4cv5jk95md6jby27yr52r8vp"; depends=[]; }; blender = derive2 { name="blender"; version="0.1.2"; sha256="1qqkfgf7fzwcz88a43cqr8bw86qda33f18dg3rv1k77gpjqr999c"; depends=[vegan]; }; blin = derive2 { name="blin"; version="0.0.1"; sha256="1h94azm7gli9i4v3li5c1p36p3rkcj2p5j6rqzlzf0pcqs0bsc09"; depends=[abind glmnet MASS Matrix mvtnorm]; }; - blkbox = derive2 { name="blkbox"; version="1.0"; sha256="14bl0b5w46gb7v8p94df5r56nj849r7jqisajagvd1irda3vkc7z"; depends=[bartMachine caret dplyr e1071 ggplot2 glmnet gtools kknn knitr magrittr nnet pamr party plyr pROC randomForest reshape reshape2 rJava rmarkdown shiny shinyjs stringr tibble tidyr xgboost]; }; + blindrecalc = derive2 { name="blindrecalc"; version="0.1.2"; sha256="0nph82l58kgq2dqvga262zh394zp1had85qb8k8rwgaq68lad2vy"; depends=[Rcpp]; }; + bliss = derive2 { name="bliss"; version="1.0.1"; sha256="1l3l7l9wq53if3w1j9l4d1pvlzhk8hx3pc3sly2h3nl2mds72hi2"; depends=[ggplot2 MASS RColorBrewer Rcpp RcppArmadillo rockchalk]; }; blm = derive2 { name="blm"; version="2013.2.4.4"; sha256="1w6c30cq38j4i1q4hjg12l70mhy5viw886l1lsnxyvniy113in4i"; depends=[]; }; blme = derive2 { name="blme"; version="1.0-4"; sha256="1ca2b0248k0fj3lczn9shfjplz1sl4ay4v6djldizp2ch2vwdgy2"; depends=[lme4]; }; blmeco = derive2 { name="blmeco"; version="1.4"; sha256="1370djpy87816bfr0g8730x7q4d4xx9aa41iqm622q5b5zm2jzmp"; depends=[arm lme4 MASS]; }; @@ -5664,12 +5820,12 @@ in with self; { blockTools = derive2 { name="blockTools"; version="0.6-3"; sha256="0023p0msfmp8swq4f5aff40m976np7y051x8hjizzw91hrfa4w2n"; depends=[MASS tibble]; }; blockcluster = derive2 { name="blockcluster"; version="4.4.3"; sha256="0al1v4r26rh4fx4g8gyk8mxfagn75xb9n4lwh3s6xvk87x33p20c"; depends=[Rcpp rtkore]; }; blockmatrix = derive2 { name="blockmatrix"; version="1.0"; sha256="14k69ly4i8pb8z59005kaf5rpv611kk1mk96q6piyn1gz1s6sk6r"; depends=[]; }; - blockmodeling = derive2 { name="blockmodeling"; version="0.3.6"; sha256="12paf76l3wlxad14bkxn37lw9rg6ka473m86wlcf3yhriw8kbaiz"; depends=[Matrix]; }; + blockmodeling = derive2 { name="blockmodeling"; version="1.0.0"; sha256="1z4w2kq0id0gb5d0lqcdaw3clplhzywarkpvvx3drivdypzl237i"; depends=[Matrix]; }; blockmodels = derive2 { name="blockmodels"; version="1.1.1"; sha256="088629i4g63m8rnqmrv50dgpqbnxd1a4zl5wr3ga0pdpqhmd53wp"; depends=[digest Rcpp RcppArmadillo]; }; blockrand = derive2 { name="blockrand"; version="1.5"; sha256="0bic3b8l7mp2hpwd8k1diwy6a4lj92i7s5k20i2wy8kw0c74jwfh"; depends=[]; }; - blocksdesign = derive2 { name="blocksdesign"; version="3.9"; sha256="12misnycbfqr5la4h35dx33cs7jxjxrh8cxmsh4pwbw38b6kjc86"; depends=[lme4 plyr PolynomF]; }; - blogdown = derive2 { name="blogdown"; version="0.18"; sha256="10alz3s803pw8yy8c540xfnn86zhvgk7lyx7c3v0q50b64m4arjl"; depends=[bookdown htmltools httpuv knitr rmarkdown servr xfun yaml]; }; - blorr = derive2 { name="blorr"; version="0.2.2"; sha256="1fwpaj4sc4jh4f25zlx8z2gn2gfnj5ibic95rn60iq75mp9r6x44"; depends=[car caret checkmate cli clisymbols crayon dplyr e1071 ggplot2 gridExtra magrittr purrr Rcpp rlang scales tibble xplorerr]; }; + blocksdesign = derive2 { name="blocksdesign"; version="4.3"; sha256="0g70ap2x3j3454xyvaqj80njzddq6z880b6w0pqxvwcgy4916k5b"; depends=[lme4 plyr PolynomF]; }; + blogdown = derive2 { name="blogdown"; version="0.20"; sha256="0iz4idfpzk4s13xhw1n8dpk117c0qkrh6qg2yvcfmrp0wdkwwr6d"; depends=[bookdown htmltools httpuv knitr rmarkdown servr xfun yaml]; }; + blorr = derive2 { name="blorr"; version="0.3.0"; sha256="1ynvg6ar7c7p01225q9czy4gxks0p1vw3sx207l7vzqxw20wb1bn"; depends=[car data_table ggplot2 gridExtra lest Rcpp]; }; blrm = derive2 { name="blrm"; version="1.0-1"; sha256="0p0nmbxil4l89fcryrgsg9mxzb5fyg93p50aqkjy00ms05hwd0hx"; depends=[boot mvtnorm openxlsx reshape2 rjags]; }; blsAPI = derive2 { name="blsAPI"; version="0.2.1"; sha256="0p45g4qqaialh5m9bxgrvnc7nqmm0429syw0bml8h4h8vy4014a7"; depends=[httr rjson]; }; blscrapeR = derive2 { name="blscrapeR"; version="3.2.0"; sha256="0dq9yg9xik715b36vc3fch4ab3njqa22w7b7b905b9gyagkv2zbv"; depends=[dplyr ggplot2 httr jsonlite magrittr purrr stringr tibble]; }; @@ -5678,42 +5834,43 @@ in with self; { bmd = derive2 { name="bmd"; version="0.5"; sha256="0d4wxyymycb416sdn272292l70s1h2m5kv568vakx3rbvb8y6agy"; depends=[drc]; }; bmem = derive2 { name="bmem"; version="1.7"; sha256="1g259j2jzmbbv98l0w6jc4k18ad0a7hvq2s9jgjdxk8n6ymbx67v"; depends=[Amelia lavaan MASS sem snowfall]; }; bmeta = derive2 { name="bmeta"; version="0.1.2"; sha256="19pm60xpmlanngq4nbibp0n5m98xw24b2xghz92ly31i3mkg2n68"; depends=[forestplot R2jags]; }; - bmixture = derive2 { name="bmixture"; version="1.4"; sha256="0dh4qy0snxw7d82v68zymwm5pfvzwdfkyaha6kgh2mvin5k2vaqm"; depends=[BDgraph]; }; + bmixture = derive2 { name="bmixture"; version="1.6"; sha256="12csg1nafhwhqrhg5rrzjsw06fbvgd8447a9ypbgs78ah81rmr8f"; depends=[BDgraph]; }; bmk = derive2 { name="bmk"; version="1.0"; sha256="1wxkrlrhmsxsiraj8nyiax9bqs834ln2swykmpf40wxspkykgfdq"; depends=[coda functional plyr]; }; bmlm = derive2 { name="bmlm"; version="1.3.11"; sha256="1nlwfrs6kk2jxq8vxwfj388cdf2p8h81lskkb9bp80fp8fx722qh"; depends=[BH ggplot2 Rcpp RcppEigen rstan StanHeaders]; }; bmmix = derive2 { name="bmmix"; version="0.1-2"; sha256="00php2pgpnm9n0mnamchi6a3dgaa97kdz2ynivrf38s0vca7fqx8"; depends=[ggplot2 reshape2]; }; - bmotif = derive2 { name="bmotif"; version="2.0.0"; sha256="1vvh20hzf2nfc28pp2vjgip3xjv617lawfjawd51v3xmfnk3bvj2"; depends=[gtools Rcpp reshape2 tensor]; }; bmp = derive2 { name="bmp"; version="0.3"; sha256="0jd67r11bn98hjwgyr6gas423787xy7ji2hq7ay80blkkcj91xxx"; depends=[]; }; bmrm = derive2 { name="bmrm"; version="4.1"; sha256="1brdd5mhr5282wkdc62lgsqcxw077p69rknjk7fjcs282ahcik2s"; depends=[LowRankQP lpSolve matrixStats Rcpp]; }; bnclassify = derive2 { name="bnclassify"; version="0.4.5"; sha256="1ik3n0g6gw7504ryg5skwygyc545150r297gii4mr2zj252lf069"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; bnlearn = derive2 { name="bnlearn"; version="4.5"; sha256="0y452cw1dxm1cik4na1zq6g0zv5ybiwc1cq9sdashq1jacjpc158"; depends=[]; }; - bnma = derive2 { name="bnma"; version="1.1.1"; sha256="1iwm4843hq07i4r73vaf8pymk0p4m3vpbw3l37l79i4c2ysqgv3h"; depends=[coda ggplot2 igraph rjags]; }; + bnma = derive2 { name="bnma"; version="1.2.0"; sha256="1h01f7f497fgm52nmxw451m8wd6y6gsvm5iprm1klblx7iqzdm6y"; depends=[coda ggplot2 igraph rjags]; }; bnnSurvival = derive2 { name="bnnSurvival"; version="0.1.5"; sha256="1d9jmfx0id4lmw122zga7hb52vlfdfqn4amhzpsmhyck99rv92j4"; depends=[pec prodlim Rcpp]; }; bnormnlr = derive2 { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; }; bnpa = derive2 { name="bnpa"; version="0.3.0"; sha256="0qsxk47i7q4d8hbs2xj5k5sf8bqyzhq7rbj4y7w8ljprznlydgl9"; depends=[bnlearn fastDummies lavaan Rgraphviz semPlot xlsx]; }; bnpmr = derive2 { name="bnpmr"; version="1.2"; sha256="0vpqhs1h2mphn9w5yngb7lxvmzrhn7mkj7ca6hykhhg48s2ra98g"; depends=[]; }; bnpsd = derive2 { name="bnpsd"; version="1.2.1"; sha256="1jnv0pnq5fd5pyy1rx4cbrxl715ss2ci3p9k6zwz5s9x1kxhvgd9"; depends=[]; }; bnspatial = derive2 { name="bnspatial"; version="1.1.1"; sha256="1drm9ia4lr80wahbbn9xrw658ppmgxm4iadwv77jz1x786dda2n1"; depends=[doParallel foreach gRain gRbase raster rgdal sf]; }; - bnstruct = derive2 { name="bnstruct"; version="1.0.6"; sha256="1vnjjv8ms8hvd21zsgyl056s266a1plp7ybdmnkl2cy3n8jpdwi1"; depends=[bitops igraph Matrix]; }; - bnviewer = derive2 { name="bnviewer"; version="0.1.4"; sha256="1g9zllgbkx274nsarx7q4nxsjq2wwgrfh231xbqzrsjwdnjzlbf7"; depends=[bnlearn igraph visNetwork]; }; + bnstruct = derive2 { name="bnstruct"; version="1.0.8"; sha256="1a4x235mji9hkw3gp4br6yj351x0rdxi5nhyrqihna35y4a9429g"; depends=[bitops igraph Matrix]; }; + bnviewer = derive2 { name="bnviewer"; version="0.1.5"; sha256="10yabl761ci8w4afj1smx4m27s3bdvsrg79xfayfb8428zvwb3la"; depends=[bnlearn igraph shiny visNetwork]; }; boa = derive2 { name="boa"; version="1.1.8-2"; sha256="04lhqk5qfvaz1jk90glr2yi5vq7cdy0w8m6g2lnzk359l9y41zhp"; depends=[]; }; bodenmiller = derive2 { name="bodenmiller"; version="0.1"; sha256="0gqrjscgq4qgk7yl32w0965yscc1py9klr49s8q8hkzyihlwzim2"; depends=[]; }; boilerpipeR = derive2 { name="boilerpipeR"; version="1.3"; sha256="0467bjqhdmi3p02fp0r7rgm00x9ry464f2hniav990qzsw8i16q6"; depends=[rJava]; }; - bold = derive2 { name="bold"; version="0.9.0"; sha256="0ppdhbpdffvs0sgh7ykkhr585nhk66w6vqw793wa4ia57yl49s25"; depends=[crul data_table jsonlite plyr reshape stringr tibble xml2]; }; + bold = derive2 { name="bold"; version="1.1.0"; sha256="06qxkmfzgq7427js13bddxq9iydq0dpa13wyzrbycl6xg83sha0z"; depends=[crul data_table jsonlite plyr reshape stringr tibble xml2]; }; bomrang = derive2 { name="bomrang"; version="0.7.0"; sha256="0xlsivhnank7bc3y06wk5avlzlc24mfvn9c18rhgxxib8mzf8aak"; depends=[crayon curl data_table dplyr foreign hoardr httr janitor jsonlite lubridate magrittr raster readr rgdal rvest tidyr xml2]; }; - bookdown = derive2 { name="bookdown"; version="0.18"; sha256="1my6g16phx21v5cvfqcnjibh3zcv02xkix347aafd6a7r3hnxpq5"; depends=[htmltools knitr rmarkdown tinytex xfun]; }; + bookdown = derive2 { name="bookdown"; version="0.20"; sha256="0gnshkp1aj7f29sjkhzxn890hz39nwaqdln61x8apmrc658nacdg"; depends=[htmltools knitr rmarkdown tinytex xfun]; }; bookdownplus = derive2 { name="bookdownplus"; version="1.5.8"; sha256="1cdxz5c69cgdk7wxr0xwhzw361rpg7j8xjv9hjf1877qqmhxbrkd"; depends=[bookdown knitr magick xaringan]; }; boostmtree = derive2 { name="boostmtree"; version="1.4.1"; sha256="16adb9akrdw1cfcarrv9l5cxhn1nzskir6nwl9nawl1r727s57z6"; depends=[nlme randomForestSRC]; }; boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; }; - boot = derive2 { name="boot"; version="1.3-24"; sha256="0yv0l55kjmlfdx1xhgyjdi0bskxhfal74wr5jxaib1qj99nmkm49"; depends=[]; }; + boot = derive2 { name="boot"; version="1.3-25"; sha256="1gpvi1h3nqhnnsfy96rlhakdpj84iqqsxr29rr3261sknky3aj26"; depends=[]; }; + boot_heterogeneity = derive2 { name="boot.heterogeneity"; version="0.1.0"; sha256="0rv4z1c3knny3z8ybpa8smib2fwxffr882jql3f2lxgswaapp6jj"; depends=[metafor pbmcapply]; }; bootES = derive2 { name="bootES"; version="1.2"; sha256="0hcaw1v80zspdsy4wr464lmgq33807i2f6n2dc3r7qqwa80g4zz0"; depends=[boot]; }; - bootImpute = derive2 { name="bootImpute"; version="1.0.0"; sha256="0y2iw1ryhl7zskv1glrfjg75y7r0wmll0ls4254digp3wykafll1"; depends=[mice smcfcs]; }; + bootImpute = derive2 { name="bootImpute"; version="1.1.0"; sha256="1dkm0l397jp23lcj4pbl03c2pjj027zjy08jq7qyr9s1bjmxrbnq"; depends=[mice smcfcs]; }; bootLR = derive2 { name="bootLR"; version="1.0.2"; sha256="1aj5l42d5y7czxzlg6r9ykdxyjf8m8bahl41xk4k6xpxckdnka14"; depends=[binom boot]; }; bootRes = derive2 { name="bootRes"; version="1.2.4"; sha256="1lzj154qqqxqg6q2bjnzba8hlcx473i9cpp8kkjkpy7k87fgpm7v"; depends=[]; }; bootSVD = derive2 { name="bootSVD"; version="0.5"; sha256="14xwbrpqj3j1xpsppgjxpn9ggsns2n1kmni9vn30vgy68zwvs2wy"; depends=[ff]; }; bootStepAIC = derive2 { name="bootStepAIC"; version="1.2-0"; sha256="0p6v4zjsaj1p6c678010fazdh40lpv0rvhczd1halj8aic98avdx"; depends=[MASS]; }; + bootUR = derive2 { name="bootUR"; version="0.2.0"; sha256="01hlglks2lwp49g481hyrz645grf0zhpl508vbhbsvk1z2888cs5"; depends=[Rcpp RcppArmadillo RcppProgress]; }; bootcluster = derive2 { name="bootcluster"; version="0.1.0"; sha256="1mx08p0csz06mq55bdg4vgnqa9khdgqrz4jnm48c24pg8rpaj98b"; depends=[cluster flexclust fpc mclust plyr sets]; }; - bootnet = derive2 { name="bootnet"; version="1.3"; sha256="0173xv22p25gm9hnwhh9wkq7ygxz5lkpsakhbv63v36qrlyfw9al"; depends=[abind BDgraph corpcor dplyr ggplot2 glasso graphicalVAR gtools huge igraph IsingFit IsingSampler lavaan Matrix mgm mvtnorm NetworkToolbox networktools parcor pbapply psychTools qgraph relaimpo tidyr]; }; + bootnet = derive2 { name="bootnet"; version="1.4.3"; sha256="0zmv6wibqkdhffs937xa1xjz6xn6wb4hajpdl36sfkmw3cqfc9sm"; depends=[abind BDgraph corpcor dplyr ggplot2 glasso graphicalVAR gtools huge igraph IsingFit IsingSampler lavaan Matrix mgm mvtnorm NetworkToolbox networktools pbapply psychTools qgraph relaimpo tidyr]; }; bootruin = derive2 { name="bootruin"; version="1.2-4"; sha256="1gbvh99snchipf13kjhymcx60s2kni23y7lv8lhzd3d402grp68h"; depends=[]; }; bootsPLS = derive2 { name="bootsPLS"; version="1.1.2"; sha256="19ikz3l0qds25hgcxvhsvqy6jyshcdvnxw6774ifl9ylngxvlfh0"; depends=[mixOmics]; }; bootspecdens = derive2 { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; }; @@ -5721,21 +5878,23 @@ in with self; { bootstrapFP = derive2 { name="bootstrapFP"; version="0.4.3"; sha256="19bsahkxh6g2fjz5j1bdq47vnyy38xd0vr4ahkbjz61x0h8g4nli"; depends=[sampling]; }; boottol = derive2 { name="boottol"; version="2.0"; sha256="01dps9rifzrlfm4lvi7w99phfi87b7khx940kpsr4m9s168a2dzv"; depends=[boot plyr]; }; bor = derive2 { name="bor"; version="0.1.0"; sha256="1r5jacmin0cq9zipxa9nmp3jnh6wsddd4wnzw2n5sggnf24ryp8g"; depends=[]; }; - boral = derive2 { name="boral"; version="1.8"; sha256="1m3c58hsm87dpv5z9fqik6d29z3ar5iylgl93qn676xgjli0283x"; depends=[abind coda corpcor fishMod MASS mvtnorm R2jags reshape2]; }; + boral = derive2 { name="boral"; version="1.9"; sha256="05s1bjfz8j17qqi1kszahw4yzczc18g71s44n7i7851kwy1xkcv4"; depends=[abind coda corpcor fishMod lifecycle MASS mvtnorm R2jags reshape2]; }; borrowr = derive2 { name="borrowr"; version="0.1.1"; sha256="0q9lkdzf7v9rggrwcny551cx7lfqli60dxqgqx0d2x819d7h0k1d"; depends=[BART mvtnorm Rcpp]; }; botor = derive2 { name="botor"; version="0.3.0"; sha256="1izhpc491f54p3hz32kcp2b2yxkg59ni1caglyllg22bckw228sg"; depends=[checkmate logger reticulate]; }; + boundingbox = derive2 { name="boundingbox"; version="1.0.1"; sha256="0kgpsvnq8f0qyw55rldwqapys36y6lb4w2bw2azfl4nmrrnayxbc"; depends=[gplots imager]; }; boussinesq = derive2 { name="boussinesq"; version="1.0.3"; sha256="1j1jarc3j5rby1wvj1raj779c1ka5w68z7v3q8xhzjcaccrjhzxk"; depends=[]; }; boxcoxmix = derive2 { name="boxcoxmix"; version="0.21"; sha256="0pav4nksh1zbic11l38jyyq8i58hfvwzkp88ra6nny3jn2axzipl"; depends=[npmlreg qicharts statmod]; }; boxplotdbl = derive2 { name="boxplotdbl"; version="1.3.0"; sha256="1y1b45q69sxbszd83s8ch10z4i55h34ixm8q7yxr7byx3px8y65n"; depends=[]; }; boxr = derive2 { name="boxr"; version="0.3.5"; sha256="1mhw3val08l03y7c52kq6ln2l5gjn6x1mxg0hx7nr8b86skbrka4"; depends=[assertthat bit64 digest dplyr fs glue httpuv httr mime rio rlang stringr]; }; + bpDir = derive2 { name="bpDir"; version="0.1.1"; sha256="1ia48ygnncv7msisrgqkbzbs8ld2d3lnmwpjr8myzzx4sbdafdk1"; depends=[circular MASS plotrix]; }; bpa = derive2 { name="bpa"; version="0.1.1"; sha256="0np7q1nasrq4j7ssaipvbjgrsi9n612p9lp96frq1dgix95mcgf0"; depends=[magrittr plyr]; }; bpbounds = derive2 { name="bpbounds"; version="0.1.4"; sha256="05knl0lmhbc399zwb35r8m1w5jvmwad8rg5m7m633pg7cfijayb9"; depends=[]; }; - bpca = derive2 { name="bpca"; version="1.3-0"; sha256="16a7b94nk5psnm435vrwilcsria9mhr5d31fwzxy53pzp8n78kcr"; depends=[rgl scatterplot3d]; }; + bpca = derive2 { name="bpca"; version="1.3-2"; sha256="0q3rx1wsa9y6c19kh77mvhkdb7qqywc031w6fl3sf0m0jj7skqab"; depends=[rgl scatterplot3d xtable]; }; bpcp = derive2 { name="bpcp"; version="1.4"; sha256="0jwz9vrz6ivz70qzgvpvksk94rw5m7vi6yijbg8dj6biq5rq01lv"; depends=[ggplot2 survival]; }; - bpgmm = derive2 { name="bpgmm"; version="1.0.5"; sha256="0dxyrcf1qyf3ymj36d9flaw8405m7c1cqxbv6yrqm2dhba0ymyxq"; depends=[gtools label_switching MASS mcmcse mvtnorm pgmm Rcpp RcppArmadillo]; }; + bpgmm = derive2 { name="bpgmm"; version="1.0.7"; sha256="0abh6jjglims8hjm2fwh0dz2qsgxy0fglxl5fnfgkwc139rsrhgy"; depends=[fabMix gtools label_switching MASS mclust mcmcse mvtnorm pgmm Rcpp RcppArmadillo]; }; bpnreg = derive2 { name="bpnreg"; version="1.0.3"; sha256="0s1whwi12fs77lycngrm0394cp6cy3g1pikhf670n94y21pk2bvi"; depends=[BH haven MASS Rcpp RcppArmadillo]; }; bpp = derive2 { name="bpp"; version="1.0.0"; sha256="11fgn92vvl7kklv0xdisf8gnf2rbhq11qyckqsxvc5wa821lmnkm"; depends=[mvtnorm]; }; - bqror = derive2 { name="bqror"; version="0.1.0"; sha256="1rgf4m4vh1rfrmsxx8227xm1pdnb1fq5kipdinz9zi99wiw75x2m"; depends=[GIGrvg invgamma MASS NPflow pracma truncnorm]; }; + bqror = derive2 { name="bqror"; version="0.1.1"; sha256="1r4g04p8pbk2xkk8ib49pws9hxdxzwq0rh1fmrprmmvy28p4rvic"; depends=[GIGrvg invgamma MASS NPflow pracma truncnorm]; }; bqtl = derive2 { name="bqtl"; version="1.0-32"; sha256="0jjqgsm9fmvz5nkgz608xfljjpmaf4rs4f7kxvpqn4b1l9s5lhci"; depends=[]; }; braQCA = derive2 { name="braQCA"; version="1.0.0.1"; sha256="1chyy8sk3iqs54sqg79dp1vjz3gcvnbzqbmgasdynir38b45scjh"; depends=[bootstrap dplyr QCA]; }; bracer = derive2 { name="bracer"; version="1.1.1"; sha256="1l722jg88i4898v8fwb9klwl9mbpaz1phypbpqc1j2kp2n2vq0vb"; depends=[stringr]; }; @@ -5744,58 +5903,62 @@ in with self; { brainGraph = derive2 { name="brainGraph"; version="2.7.3"; sha256="1r39hxjix7vf3x8w46cgrpxfzsjkyw1k2r34xw73rvb75xx0aaay"; depends=[abind ade4 boot data_table expm foreach ggplot2 ggrepel gridExtra Hmisc igraph MASS Matrix oro_nifti permute RcppEigen scales]; }; brainKCCA = derive2 { name="brainKCCA"; version="0.1.0"; sha256="1ag3qahlba4h4126873hg2bbi6sr729mhiw22gjgr4g4jg6lhh09"; depends=[brainR CCA elasticnet kernlab knitr misc3d oro_nifti rgl]; }; brainR = derive2 { name="brainR"; version="1.6.0"; sha256="1l5rm6grslc6mivwh2fv3pznhy2cw16fz5695pmyfamzvsjggir1"; depends=[misc3d oro_nifti rgl]; }; - brainwaver = derive2 { name="brainwaver"; version="1.6"; sha256="0r79dpd9bbbn34rm29512srzj3m29qgvbryvrp1mwv8mmcsh6ij6"; depends=[waveslim]; }; brandwatchR = derive2 { name="brandwatchR"; version="0.3.0"; sha256="10bccsaswsq06wdrxqg71amzx5rabmgfi4n074y651r2c1pyy98w"; depends=[data_table httr jsonlite]; }; brant = derive2 { name="brant"; version="0.2-0"; sha256="1hdwdrdl6ad112zd7q248am3qk19alnj647nrk9xxxgd7s6a9pnb"; depends=[MASS Matrix]; }; - brazilmaps = derive2 { name="brazilmaps"; version="0.1.0"; sha256="1nvd8x4m4m3966qph6390kqwpsrv7vy4yf6pam98xxkjbl9a41nf"; depends=[dplyr ggplot2 magrittr sf sp]; }; brea = derive2 { name="brea"; version="0.2.0"; sha256="0mb043fdhxrg9gyf4g55ydjx37j20394nvd4d0fmiym98lccyi04"; depends=[]; }; breakDown = derive2 { name="breakDown"; version="0.2.0"; sha256="1ywa7122id4infcb31rbazdd2w2hm0ff8p0a7insy3lvq0xmqd44"; depends=[ggplot2]; }; breakage = derive2 { name="breakage"; version="1.1-1"; sha256="0zjazyz92criiimpz4wyd4hd8ccspvh3hhqpd4qkfdzdf9wp3kns"; depends=[Imap]; }; breakfast = derive2 { name="breakfast"; version="1.0.0"; sha256="0p0svsqphd5w99pf5c5jmak1xxl8md881lapa8aps9xr73m4x6lf"; depends=[plyr]; }; breakpoint = derive2 { name="breakpoint"; version="1.2"; sha256="004vi1qr7iib8ykg6sp7xzv0bb841h4vsz2x0cyrhkdp41frglx9"; depends=[doParallel foreach ggplot2 MASS msm]; }; - breathtestcore = derive2 { name="breathtestcore"; version="0.6.0"; sha256="1nk1hnnb8qd6hhsh56k3zkmhx27q0xxx1igxvrgd3gd28rm6c1vb"; depends=[assertthat broom dplyr ggfittext ggplot2 MASS multcomp nlme purrr readr readxl signal stringr tibble tidyr xml2]; }; - breathteststan = derive2 { name="breathteststan"; version="0.6.0.0"; sha256="0r89h9m6s6qsbzsfp0br95gzpb5cq33yanc2h2m5x8l4wp5n38vi"; depends=[BH dplyr purrr Rcpp RcppEigen rstan rstantools StanHeaders stringr tibble tidyr]; }; + breathtestcore = derive2 { name="breathtestcore"; version="0.8.0"; sha256="08f3bdhpzrb1b2qj3yvf8zaq02vghhq54mzm5brlqw510hq2r6gz"; depends=[assertthat broom dplyr ggfittext ggplot2 MASS multcomp nlme purrr readr readxl signal stringr tibble tidyr xml2]; }; + breathteststan = derive2 { name="breathteststan"; version="0.8.0"; sha256="1h05yqpsa1r6p0iybwh7rap0n10vr2wj2driq7qyq6wk6y14m8hc"; depends=[BH dplyr purrr Rcpp RcppEigen rstan rstantools StanHeaders stringr tibble tidyr]; }; brew = derive2 { name="brew"; version="1.0-6"; sha256="1vghazbcha8gvkwwcdagjvzx6yl8zm7kgr0i9wxr4jng06d1l3fp"; depends=[]; }; brglm = derive2 { name="brglm"; version="0.6.2"; sha256="0c9ngscc6zlfm90fqyggnj04qfkhp5qgf5q3wnfpxwyc8cm47by2"; depends=[profileModel]; }; brglm2 = derive2 { name="brglm2"; version="0.6.2"; sha256="13apd1p770slnbrqs44khgv7fsh6g3fzd3n04hq36zz308avns9z"; depends=[enrichwith lpSolveAPI MASS Matrix nnet numDeriv]; }; - brickr = derive2 { name="brickr"; version="0.3.2"; sha256="1sr1bpf8alvm09l0b5cy564b1nc8zcm13ibbngxxwrc7mq3gawk1"; depends=[colorspace dplyr farver ggplot2 magrittr purrr rgl scales tidyr]; }; + brickr = derive2 { name="brickr"; version="0.3.5"; sha256="1a6yxhq2zly3i3gs4dd19xhyrin1qaxdr7x3a887j7zbcj0j4z9q"; depends=[colorspace dplyr farver ggplot2 magrittr purrr rgl scales tidyr]; }; bridgedist = derive2 { name="bridgedist"; version="0.1.0"; sha256="0hqkpwpi3nv6mfhljl65zcflf4wy72ag36hdam6s7kynfj41qz6w"; depends=[]; }; bridger2 = derive2 { name="bridger2"; version="0.1.0"; sha256="0clp42nnbvd01n65azdi2ghp0mfqwsipzdl2d30q04lcvfkdpxrf"; depends=[BSDA data_table ggplot2 outliers plotly shiny shinydashboard]; }; bridgesampling = derive2 { name="bridgesampling"; version="1.0-0"; sha256="1awhvv0v42w2q6llqi1wqpaiv5zx74cqzigdsvphy2jfp8ajw64y"; depends=[Brobdingnag coda Matrix mvtnorm scales stringr]; }; - brinton = derive2 { name="brinton"; version="0.1.6"; sha256="080z4hs6fkfavrkfg3h6h150y7w5h4rxaag6bwlrrsx9dnwzpb3r"; depends=[forcats GGally ggplot2 glue gridExtra lubridate pander RColorBrewer rmarkdown sm tibble]; }; + brinton = derive2 { name="brinton"; version="0.2.0"; sha256="04g1mz5ivjljb6rk0s6gvqjagn28mk2ixqpmz4dzxwrj0lby2yhq"; depends=[forcats GGally ggplot2 glue gridExtra lubridate pander RColorBrewer rmarkdown sm tibble]; }; brio = derive2 { name="brio"; version="1.0.0"; sha256="10gjg205vvdwbw3nr8bfrxy5fzqd27y1fsbyn17xnpk57c66igvc"; depends=[]; }; briqr = derive2 { name="briqr"; version="0.1.0"; sha256="073pdk1094ng4kggzdjvihl791r2qlja1j2w3pfmh2027kn520r8"; depends=[dplyr httr jsonlite magrittr tibble]; }; briskaR = derive2 { name="briskaR"; version="0.1.2"; sha256="1y9sabj7pfgyvv6s3bbvrb0xhjhwc4pcfsfx847kqdajid92qx8w"; depends=[deldir fftwtools fields MASS mvtnorm pracma raster rgdal rgeos sp]; }; brlrmr = derive2 { name="brlrmr"; version="0.1.7"; sha256="0s47qz8y416x0gz91pzdpr97pmlvddwkvll454vnlafxxk9p5lds"; depends=[boot brglm MASS profileModel Rcpp]; }; - brms = derive2 { name="brms"; version="2.12.0"; sha256="1699lwkklfhjz7fddawlig552g2zvrc34mqwrzqjgl35r9fm08gs"; depends=[abind backports bayesplot bridgesampling coda future ggplot2 glue loo Matrix matrixStats mgcv nleqslv nlme Rcpp rstan rstantools shinystan]; }; + brm = derive2 { name="brm"; version="1.1.1"; sha256="0kyr8mxz5g3w41kp08d47f29cff8fqrfbm1ri7hgfg2lgr1151xy"; depends=[]; }; + brms = derive2 { name="brms"; version="2.13.5"; sha256="0a2m5wr134sxflmiq5jzvanzn81fv7xndy9gyvrq3bay9vakic69"; depends=[abind backports bayesplot bridgesampling coda future ggplot2 glue loo Matrix matrixStats mgcv nleqslv nlme Rcpp rstan rstantools shinystan]; }; brnn = derive2 { name="brnn"; version="0.8"; sha256="119lxm691ci2bf62jwmbhqsl39xy3jvsi988rr6sdslwaxqyx35b"; depends=[Formula truncnorm]; }; - broman = derive2 { name="broman"; version="0.69-5"; sha256="1y1l1p0ddy4a3vwa01yhrc5zcgnl673ar9prkn89pspbdab7km2s"; depends=[assertthat ggplot2 jsonlite RPushbullet]; }; - broom = derive2 { name="broom"; version="0.5.6"; sha256="0da3jsb02xckrk6alznicn6l5lnyvdhc64qklyarnd77miqgc1hb"; depends=[backports dplyr generics nlme purrr reshape2 stringr tibble tidyr]; }; - broom_mixed = derive2 { name="broom.mixed"; version="0.2.5"; sha256="121yqj85q6pdnfhbma98a2qli1k1vkx6jdxzfg125m2iahxs9i9y"; depends=[broom coda dplyr nlme plyr purrr reshape2 stringr tibble tidyr TMB]; }; - broomExtra = derive2 { name="broomExtra"; version="4.0.0"; sha256="0sc6cikqcjmm9hr7xzz5l383p822dygsx50g8q358y92m1w2nka8"; depends=[broom broom_mixed dplyr ipmisc parameters performance rlang]; }; + broman = derive2 { name="broman"; version="0.70-4"; sha256="0xgzxrqqf5l6ydkpmsbcvba2mjggrh02r8vdkdd779vjhh8mqpkh"; depends=[assertthat ggplot2 jsonlite RPushbullet]; }; + broom = derive2 { name="broom"; version="0.7.0"; sha256="0bq8w1ckrladzck2g0mgiyjdrzi06kbqalk5q3pfvj1607fdv3d5"; depends=[backports dplyr ellipsis generics glue purrr rlang stringr tibble tidyr]; }; + broom_mixed = derive2 { name="broom.mixed"; version="0.2.6"; sha256="1858dninq16s8p00hapn9vb3i1r5alia50bi89a37zcnap31ibai"; depends=[broom coda cubelyr dplyr nlme plyr purrr reshape2 stringr tibble tidyr TMB]; }; + broomExtra = derive2 { name="broomExtra"; version="4.0.4"; sha256="00a445nlvs9qsgwpaf8ksc3xckdh059id0hcigl5h5m2y1ghld5g"; depends=[broom broom_mixed dplyr ipmisc parameters performance rlang]; }; brotli = derive2 { name="brotli"; version="1.2"; sha256="07rgdgxh9bvn0qavpclxmkglwyl6ndqasxcs6j12if698dkn976b"; depends=[]; }; brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; }; - brranching = derive2 { name="brranching"; version="0.5.0"; sha256="07dxynk8pbpbsqwaxg9vhpjv4wx8mb1lqxy1nkczjayn1yrpjfm5"; depends=[ape conditionz crul curl phylocomr phytools taxize]; }; + brranching = derive2 { name="brranching"; version="0.6.0"; sha256="032n5yp75bkzwb24zbad25f2059hqgdkv6mxsbb49pda34rm6y76"; depends=[ape conditionz crul curl phylocomr phytools taxize]; }; brt = derive2 { name="brt"; version="1.3.0"; sha256="13fn2mv66fys7w0xchh69sb6jggg5c2imk1psi3mlr1902m6ss5m"; depends=[ggplot2]; }; brunnermunzel = derive2 { name="brunnermunzel"; version="1.4.1"; sha256="1lba5cpiray65zg1pv3xv6yl1xg78rqlwxkcmhgizlh1rhpd430p"; depends=[]; }; bs4Dash = derive2 { name="bs4Dash"; version="0.5.0"; sha256="1y75i6bsdy1bsbzwjblsnimw1zzk0zl3qnzqfq9zcnf6q2ghi3r2"; depends=[htmltools shiny]; }; bsam = derive2 { name="bsam"; version="1.1.2"; sha256="1m2lpqm2i4i35hzr1iylrb8skx8rsys3w542xjyqw030bs7b1rdk"; depends=[coda dplyr ggplot2 gridExtra lubridate msm mvtnorm rjags rworldxtra sp tibble]; }; bsamGP = derive2 { name="bsamGP"; version="1.2.3"; sha256="1wqs2y9f7fgdvshhzwpjp811h4xhdd1lplpadnpffa2lmyv7vh5s"; depends=[ggplot2 gridExtra MASS]; }; bsearchtools = derive2 { name="bsearchtools"; version="0.0.61"; sha256="11fqz8kdhqpc3jq34vgv3frzawgsl5y0s83rb2p54yb5yhd3p68w"; depends=[Rcpp]; }; + bsem = derive2 { name="bsem"; version="1.0.0"; sha256="1h4wsib6ppqj8nbvj4pzkm04bzrdkg9l7xfmzzmld9cswai4iw52"; depends=[BH coda DiagrammeR lattice magrittr Rcpp RcppEigen rstan rstantools shiny StanHeaders viridis visNetwork]; }; bshazard = derive2 { name="bshazard"; version="1.1"; sha256="1kidypyqlilf794mksjvhja8bmnd9hdhz91ywy0mcddgc6wbar4h"; depends=[Epi survival]; }; bspec = derive2 { name="bspec"; version="1.5"; sha256="0jynvir7z4q1vrvhdn6wijdrjfrkk4544nlawabw2fnfxss91a91"; depends=[]; }; bsplinePsd = derive2 { name="bsplinePsd"; version="0.6.0"; sha256="0f785l02hiq3f7anxqhm09f7lrqgkkqhly7f1x78cxm22hvrqyhg"; depends=[Rcpp]; }; - bsplus = derive2 { name="bsplus"; version="0.1.1"; sha256="0s3407z48b7sdbkjkqcjk2j1wvs0z7chvdjzphil83l0vp3j5x0s"; depends=[glue htmltools lubridate magrittr purrr rmarkdown stringr]; }; + bsplus = derive2 { name="bsplus"; version="0.1.2"; sha256="19vz8f9ln7kf3myx30lpcz8viv51bbl7n6nppys0zrzb6372cpn1"; depends=[glue htmltools jsonlite lubridate magrittr purrr rmarkdown stringr]; }; + bspm = derive2 { name="bspm"; version="0.3.4"; sha256="1kb0h6g3r6r0blmgvh3y23rzaz4k99qw3fgsmvsn2bna22ms2yfy"; depends=[]; }; bspmma = derive2 { name="bspmma"; version="0.1-2"; sha256="1a3p1h7bks5yrxv791wfa680v4a6q10p59iz6wvfifhf3ndlaw49"; depends=[]; }; - bssm = derive2 { name="bssm"; version="0.1.11"; sha256="05hdpq0zkwg66hj2hv79mp6df85lxm7hw4z1i7crqz7yx6s37dld"; depends=[BH coda diagis ggplot2 ramcmc Rcpp RcppArmadillo sitmo]; }; + bssm = derive2 { name="bssm"; version="1.0.0"; sha256="0c4yxhcrpcq4kx1n097p9yhy4aq7vgsl3m04d323k309ya7bg2mz"; depends=[coda diagis ramcmc Rcpp RcppArmadillo sitmo]; }; bssn = derive2 { name="bssn"; version="1.0"; sha256="1brxbvcvqy8n9xpvp5kz47x5ps8hdqgnh6s49051qaylp95qm432"; depends=[ClusterR mvtnorm sn ssmn]; }; - bst = derive2 { name="bst"; version="0.3-17"; sha256="0x7hv0gx5kn8dwgbkabz7d4dh2l75zdawgdj5zxan13k7b9n3l8y"; depends=[doParallel foreach gbm rpart]; }; - bsts = derive2 { name="bsts"; version="0.9.2"; sha256="1v32wsjcfcq0zwklrp0c83xw4h49v49nmjs973mdzh4q05wzlpmp"; depends=[Boom BoomSpikeSlab xts zoo]; }; - btb = derive2 { name="btb"; version="0.1.30"; sha256="1f94zzpg3q6ldd436cv1wqpfbpw5f706073wk38a4dkg57dwrbgi"; depends=[BH Rcpp RcppArmadillo RcppParallel sf sp]; }; - btergm = derive2 { name="btergm"; version="1.9.7"; sha256="1p7s5432azz3rdsa7wb2nnlpajq1msard6x3lg95bdgjldnl3nfc"; depends=[boot coda ergm ggplot2 igraph Matrix network ROCR RSiena sna speedglm statnet_common xergm_common]; }; + bst = derive2 { name="bst"; version="0.3-21"; sha256="006pria75zmlc1q8jn353wmb28hm4k1an1qffv9jnj0842md4c8q"; depends=[doParallel foreach gbm rpart]; }; + bsts = derive2 { name="bsts"; version="0.9.5"; sha256="17q82f57xgzgil06z47dgkll88iz6qng7nxw1gjn6sqi5zk72lxq"; depends=[Boom BoomSpikeSlab xts zoo]; }; + bsub = derive2 { name="bsub"; version="1.0.0"; sha256="1byw2wbbva6i0hsb4xz2f65n6ak7w7bpq9g8n25a1s3h9zvqk4pa"; depends=[clisymbols crayon digest GetoptLong GlobalOptions]; }; + btb = derive2 { name="btb"; version="0.1.30.3"; sha256="00asbzjgcjd1cm5m1yndbgr60zpvnhbk5b7rhkhc2z1w513bwi8w"; depends=[BH Rcpp RcppArmadillo RcppParallel sf sp]; }; + btergm = derive2 { name="btergm"; version="1.9.9"; sha256="1z2acmh5k4bzhypr2856wwc3qfns4az058cxab6h24z9y2kr6ki5"; depends=[boot coda ergm ggplot2 igraph Matrix network ROCR RSiena sna speedglm statnet_common xergm_common]; }; + bubblyr = derive2 { name="bubblyr"; version="0.1.2"; sha256="04agfwk6rmbhlfblfw1irqnv3yrp00zfn4qwy2169b7ypg8r55v2"; depends=[glue htmltools]; }; bucky = derive2 { name="bucky"; version="1.0.6"; sha256="01rlx0m6h66y1p9k5llg17qpajjhk2vmhbpwc4i5igf5x5g4clgc"; depends=[lmtest sandwich]; }; - buildmer = derive2 { name="buildmer"; version="1.5"; sha256="0m9dz2fb2cwc5l7wnb2dsnqyfkh1ppnlfz9r38ihanav7awsrb17"; depends=[lme4 mgcv nlme plyr]; }; - bujar = derive2 { name="bujar"; version="0.2-7"; sha256="1r14mh5j2w87mc6b192hi4qg97si2xv6v826j6c1awh7w3vqbbr9"; depends=[bst earth elasticnet gbm mboost mda modeltools mpath rms survival]; }; + buildmer = derive2 { name="buildmer"; version="1.6"; sha256="135hz3nqmp6sbwhfj1l8cqh6nf5jclz6bmdhy9k2yjhg47j3snwq"; depends=[lme4 mgcv nlme plyr]; }; + buildr = derive2 { name="buildr"; version="0.0.4"; sha256="1h678bfha02harq0gf35j6rhbwcvf9yzqqidm7131hki42xg2w2q"; depends=[]; }; + bujar = derive2 { name="bujar"; version="0.2-8"; sha256="13q2zv5q7jyj0vjcqqsf60snpqjpj788559jc1mmj3q11mmii0vv"; depends=[bst earth elasticnet gbm mboost mda modeltools mpath rms survival]; }; bulletcp = derive2 { name="bulletcp"; version="1.0.0"; sha256="1k7lw8gflih47ncz8hgsj0sxbajnkhz1k7yb7rwbdnzcki3n3jln"; depends=[assertthat dplyr mvtnorm Rdpack]; }; bulletr = derive2 { name="bulletr"; version="0.1"; sha256="181rnrp62almf08gr41qnrnq8qnbqraqdvj4zixdh8fachsq2imp"; depends=[dplyr ggplot2 plotly plyr reshape2 robustbase smoother xml2 zoo]; }; bullwhipgame = derive2 { name="bullwhipgame"; version="0.1.0"; sha256="03nwf2v4zhgkxvkghpkbkxz0cnkqcwwl51ykrk25qciakfqkgfws"; depends=[shiny]; }; @@ -5803,18 +5966,19 @@ in with self; { bunchr = derive2 { name="bunchr"; version="1.2.0"; sha256="1b8hdg2x26k0ahx4gxdpzr36hy056939r4496q3vbgyd4bbk2fbd"; depends=[shiny]; }; bundesbank = derive2 { name="bundesbank"; version="0.1-9"; sha256="05sc6m2v8bfgdka7v28rxhq5a8c88gsxkv0zjk08rpw8k8zql0dk"; depends=[]; }; bundesligR = derive2 { name="bundesligR"; version="0.1.0"; sha256="0dnhbh9jh7dfbk7mfh8msq4ys5kakalr0kwkycycrb2q8rd049vp"; depends=[]; }; - bupaR = derive2 { name="bupaR"; version="0.4.3"; sha256="1041agc2bxwdxham850ac9lirrirba057ghi2h33mcmba8k5a1i2"; depends=[data_table dplyr eventdataR forcats glue lubridate magrittr miniUI purrr rlang shiny stringr tidyr]; }; + bupaR = derive2 { name="bupaR"; version="0.4.4"; sha256="0ysxvp9ksn00mghll62k0a2qgrqccvprn5zwywsp77rhfb97pfdg"; depends=[data_table dplyr eventdataR forcats glue lubridate magrittr miniUI purrr rlang shiny stringr tidyr]; }; burnr = derive2 { name="burnr"; version="0.5.0"; sha256="19kkk4cyd7h3idn8di77426lcmq2jkxaksbpvg87hpkn72vcr8y5"; depends=[ggplot2 MASS plyr reshape2]; }; bursts = derive2 { name="bursts"; version="1.0-1"; sha256="172g09d1vmwl83xs6gr4gfblqmx3apvblpzdr5d7fcw1ybsx0kj6"; depends=[]; }; busdater = derive2 { name="busdater"; version="0.2.0"; sha256="0hib73zay9r7rv49zv1lx0l15jzjyli9f1vrk414l8apggvx4c6s"; depends=[lubridate]; }; butcher = derive2 { name="butcher"; version="0.1.2"; sha256="0z3rpjvrr42j1qqzmadigcq2ivqd40dhz7yymjmbap9nbz26rb3l"; depends=[fs lobstr modeldata purrr rlang tibble usethis]; }; bvarsv = derive2 { name="bvarsv"; version="1.1"; sha256="1bv4fbbi8bn7sqqpjlf8w5jpgydjr15wv5v9940wc42yk792yjrx"; depends=[Rcpp RcppArmadillo]; }; - bvartools = derive2 { name="bvartools"; version="0.0.2"; sha256="16wa2bnm91764xspgvswvl3ylv0s3x5f734scw9x0zjy9q72b05h"; depends=[coda Rcpp RcppArmadillo]; }; + bvartools = derive2 { name="bvartools"; version="0.0.3"; sha256="1yxciyvzrzfllnmjspv5ivb9i160y7x2q0d5rn9fjy91wq8hvfag"; depends=[coda Matrix Rcpp RcppArmadillo]; }; bvenn = derive2 { name="bvenn"; version="0.1"; sha256="1xrya49w5bd2b7plfxpqla60b2828rkm0rjmc4qnqzvrahsbal0y"; depends=[]; }; bvls = derive2 { name="bvls"; version="1.4"; sha256="18aaf7kk5mks3a59wwqhm1ckpn6s704l9m5nzy0x5iw0s98ijbm2"; depends=[]; }; + bvpSolve = derive2 { name="bvpSolve"; version="1.4.1"; sha256="0pxpnf19g085c1a4nb2j48nr611fg1sdl7jlv79nmy4b985yqvrw"; depends=[deSolve rootSolve]; }; bwd = derive2 { name="bwd"; version="0.1.0"; sha256="1ryd5cqbpns9dsis2a9vjg6fcg23284c3dr3j3l18krdshdksfr0"; depends=[]; }; bwimage = derive2 { name="bwimage"; version="1.3"; sha256="1r5l7z90q2qs92dzp78jj4gf1kg1gc85g6y5rn2z8vxjbvbc5vma"; depends=[jpeg png]; }; - bwsTools = derive2 { name="bwsTools"; version="1.1.0"; sha256="06gvw966p2qgkw1c2rdr5hiha47aclb398kjf8sgh5dcka9sv256"; depends=[crossdes dplyr ggplot2 igraph magrittr rlang tidyr]; }; + bwsTools = derive2 { name="bwsTools"; version="1.1.1"; sha256="12ww4mb956jxs1329l1zvvc1cgxs69n3naq3502aj80g9giw6xnd"; depends=[crossdes dplyr ggplot2 igraph magrittr rlang tidyr]; }; bysykkel = derive2 { name="bysykkel"; version="0.3.1"; sha256="1lvqbax7dvli4265856f9667ckp9g5l4radz2cp0yk0slsjgsdpg"; depends=[glue httr jsonlite lubridate tibble]; }; bytescircle = derive2 { name="bytescircle"; version="1.1"; sha256="0c83d37kijcvr00pc4qqdci14cpbg6988izyjfjk1yliavyc6mwf"; depends=[]; }; bzinb = derive2 { name="bzinb"; version="1.0.4"; sha256="1424lwsm2ra124h0ahbl42szbx500fqkf9ccw9k1688iwxnfg7f2"; depends=[BH Rcpp]; }; @@ -5826,9 +5990,10 @@ in with self; { c3net = derive2 { name="c3net"; version="1.1.1"; sha256="0m4nvrs41kmlakc6m203zlncqwgj94wns8kzcb31xngjcacmcq42"; depends=[igraph]; }; cAIC4 = derive2 { name="cAIC4"; version="0.9"; sha256="0imy4kq09an9azqi3aahw3lsmby8km2am0w7fb314xq6ghzf9xmp"; depends=[lme4 Matrix mgcv mvtnorm nlme RLRsim]; }; cIRT = derive2 { name="cIRT"; version="1.3.1"; sha256="1x7cbawzzpzripzyg4yavc9s6kx06ff4q151kbvylr9wsf78s6qg"; depends=[Rcpp RcppArmadillo]; }; - cNORM = derive2 { name="cNORM"; version="1.2.2"; sha256="1lid4j6i65xmmakab0bbs7vyhkrvax3l5kv7r66x665gm8y00h0b"; depends=[lattice latticeExtra leaps]; }; + cNORM = derive2 { name="cNORM"; version="1.2.3"; sha256="0ywx8cszyg9zk5pp86f0rigv2m04c93z3p6dqhf6nn8hm8pj41px"; depends=[lattice latticeExtra leaps]; }; cOde = derive2 { name="cOde"; version="1.0.0"; sha256="12222wlsk9l6m9y477mjl8x279xhs8c1l1wsq92khwycm1j06jfy"; depends=[]; }; cPCG = derive2 { name="cPCG"; version="1.0"; sha256="1pfbsv2rcjsryn6nr56a7i4yb7k0m3gdfn4q9l1kpzhmv9lic7m1"; depends=[Rcpp RcppArmadillo]; }; + cRegulome = derive2 { name="cRegulome"; version="0.3.2"; sha256="0cvxad73l85zsgqmis5p24v71kkzi784b8v5z07f0dh9yp41p96q"; depends=[DBI ggplot2 ggridges httr igraph R_utils RSQLite UpSetR VennDiagram]; }; cSEM = derive2 { name="cSEM"; version="0.2.0"; sha256="0ynqclr78vi97bd4wds0zws2iydziwzqsfjhpcpi87wca0chm4z8"; depends=[abind alabama cli crayon expm future future_apply lavaan magrittr MASS Matrix matrixcalc matrixStats polycor psych purrr Rdpack symmoments]; }; ca = derive2 { name="ca"; version="0.71.1"; sha256="095lk7p2b9835hc3a03c4019wg0baf0dhz6c2vqpaq1m9k4jy304"; depends=[]; }; caMST = derive2 { name="caMST"; version="0.1.3"; sha256="1hhxyw7sbzm2v09xaxvq347gl8p5wkjxx43187mqbw0nzknlg5bg"; depends=[catR diagram mstR]; }; @@ -5840,28 +6005,29 @@ in with self; { cacIRT = derive2 { name="cacIRT"; version="1.4"; sha256="145j6isqa8yj2nvlqkxagd076zs10ng3n44khi5p4jj77fjc8gh6"; depends=[]; }; caesar = derive2 { name="caesar"; version="1.0.0"; sha256="0z1bb5cmjr97l3h9svy4r4bj58jkmq6kdkip577cvy2xf5q9n410"; depends=[binhf]; }; caffsim = derive2 { name="caffsim"; version="0.2.2"; sha256="00bkgmmqrydpji2pvhcchgl2p8w5ksby4g80i3h76q0bm2325w9h"; depends=[dplyr ggplot2 markdown mgcv shiny tibble tidyr]; }; - cairoDevice = derive2 { name="cairoDevice"; version="2.28"; sha256="14885gpmhdzmxbz3q59s5sd3kjkyi5yf9lpnjwmvc482n8ix4lpq"; depends=[]; }; + cairoDevice = derive2 { name="cairoDevice"; version="2.28.2"; sha256="0hd8lcps8s2nmbqgrxc19dslsvppn1fbwylczx6h3isiv9zmxapj"; depends=[]; }; calACS = derive2 { name="calACS"; version="2.2.2"; sha256="0a53k2rzyjksb0ypr5zrask4a6mgiyrqx0l2z3lm218y8pk2jf1w"; depends=[]; }; + calcUnique = derive2 { name="calcUnique"; version="0.1.2"; sha256="012mjayj90m5gsd8mhm2ic00pa0bnrjiidq9mv4vxj8slwp641rz"; depends=[]; }; calcWOI = derive2 { name="calcWOI"; version="1.0.3"; sha256="1bxsn9b99hnb365qvlzr0ymwavamlyhs5sm9s2fdjh4zv3f32n3l"; depends=[dualtrees LS2W wavethresh]; }; calculus = derive2 { name="calculus"; version="0.2.1"; sha256="0hs7hzjl6xjza20v9zx9a1piywxa6w3h2rskr52d1dcbc0vwhinp"; depends=[Rcpp]; }; calendar = derive2 { name="calendar"; version="0.0.1"; sha256="18ha6vpx2bpk8p08hajiq2d201fbqhzcycp8ks6wrr06fy04z689"; depends=[lubridate tibble]; }; calibrar = derive2 { name="calibrar"; version="0.2.0"; sha256="1544bc5rhhc6d1mky7ngza00wwh63q07dkbzlwfgyavly8m9cplb"; depends=[cmaes foreach optimx]; }; - calibrate = derive2 { name="calibrate"; version="1.7.5"; sha256="1s423nr176l2sc66wp7hzgqkv7c2bq8d2bjrrvrrm5qa9y3zdx1k"; depends=[MASS]; }; + calibrate = derive2 { name="calibrate"; version="1.7.7"; sha256="19kgrnsyq67iqv1biyssqi30a6v2836ql20nabpy2m692ns0jfvi"; depends=[MASS]; }; calibrateBinary = derive2 { name="calibrateBinary"; version="0.1"; sha256="1k6sl4bg05piyczpk6wsva914gcmy8viyz4423gx9i6ddflb7xdb"; depends=[gelnet GPfit kernlab randtoolbox]; }; calibrator = derive2 { name="calibrator"; version="1.2-8"; sha256="1m9g1pmnr6d9jkg5ab0l0cbqfj7kmx7sdmcdqdhn9ifyhhn7812y"; depends=[cubature emulator mvtnorm]; }; callr = derive2 { name="callr"; version="3.4.3"; sha256="1dc20gdawy9mhnc452qlshv2p4krs6c2gymvpv365mn141zjgdq1"; depends=[processx R6]; }; calmate = derive2 { name="calmate"; version="0.12.1"; sha256="07sjbq7bcrhal52pdzsb5pfmk6a8a44wg8xn79sv4y5v74c5xaqz"; depends=[aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; - calpassapi = derive2 { name="calpassapi"; version="0.0.2"; sha256="0i81ffdfw3m15cfbag3l9s245dyhapqhy7adb3228vam3qp3n59b"; depends=[digest dplyr httr jsonlite stringr]; }; + calpassapi = derive2 { name="calpassapi"; version="0.0.3"; sha256="1vhx5h7ah75cs1mlw25x7hal90m47596kr7fx2pd8fslq7il7p1b"; depends=[digest dplyr httr jsonlite stringr]; }; camsRad = derive2 { name="camsRad"; version="0.3.0"; sha256="06gar6qan1ka01ngjvbpcv649yvfga697mplwn1x6qnfr4ngb7cs"; depends=[httr xml2]; }; - camtrapR = derive2 { name="camtrapR"; version="2.0.2"; sha256="1bmxcwidzn993qsbz8cq9b9z449yhqd01bjx8imxykl0qy1xbbcq"; depends=[data_table overlap secr sp]; }; - cancensus = derive2 { name="cancensus"; version="0.2.1"; sha256="09ck076csz9srz660c1y2lmmvdjk2k14w1bmwizfl5vs3sb1k010"; depends=[digest dplyr httr jsonlite rlang]; }; + camtrapR = derive2 { name="camtrapR"; version="2.0.3"; sha256="13zg8kx28il7rbyr2p3c1xdxx84b7shpcmgavzjqzh6wjm5bh5mh"; depends=[data_table overlap secr sp]; }; + cancensus = derive2 { name="cancensus"; version="0.3.2"; sha256="17qi7kx23iyvxy5yy6g46avlh988a8l4r7p040waqhz4nd9zy31q"; depends=[digest dplyr httr jsonlite rlang]; }; cancerGI = derive2 { name="cancerGI"; version="1.0.0"; sha256="1chkcyf9m98gbn6b3vmb1baw7kii4g5vxvg2xfi7i6wwdn8sqr65"; depends=[igraph qvalue reshape2 survival systemfit]; }; cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; candisc = derive2 { name="candisc"; version="0.8-3"; sha256="0bshi686sad31052glai1wmzxshvafp1vkar7zirds3x737gb0fp"; depends=[car heplots]; }; - canprot = derive2 { name="canprot"; version="0.1.2"; sha256="0lc31vw49sc2zsrn52aqqljcc4n79j4i4845sr201ga67w07vrrb"; depends=[CHNOSZ xtable]; }; + canprot = derive2 { name="canprot"; version="1.0.0"; sha256="19dcknp6lrw7r3hs33lqn1iiwqgd34pb470ai8bvxhybx21hzjzi"; depends=[CHNOSZ knitr MASS rmarkdown xtable]; }; cansim = derive2 { name="cansim"; version="0.3.5"; sha256="0lqkyq2n8v2y172ihyb9vh3mimrkg2yx2c42cxdaz4p7gqiq7z8r"; depends=[dplyr httr jsonlite purrr readr rlang rvest stringr tibble xml2]; }; canvasXpress = derive2 { name="canvasXpress"; version="1.27.6-1"; sha256="0vk2iddcyc81qgvlw3k31sh2hsjbxsrcb77mxay3s32wkqr7knwa"; depends=[htmlwidgets httr]; }; - canvasXpress_data = derive2 { name="canvasXpress.data"; version="1.27.6"; sha256="0kh5g3incl5lv4pb8fd9nzvlvfvyfs3bms78hlf71z8kkag9hzn1"; depends=[]; }; + canvasXpress_data = derive2 { name="canvasXpress.data"; version="1.29.0"; sha256="12zlw950vjdjlh786c0l4wmhhzmzpgcsjfdyrmqnr1mb1mpx9vqz"; depends=[]; }; cap = derive2 { name="cap"; version="1.0"; sha256="1pv8hskxjbp589dn7rx80yaa1ld76x1w37bss2fyrys1p3qr78aa"; depends=[MASS multigroup]; }; caper = derive2 { name="caper"; version="1.0.1"; sha256="0md0sngj7wsv2d4d7fmyyz9qqismk3ps9l3qk1blqz1yi19pq124"; depends=[ape MASS mvtnorm]; }; capitalR = derive2 { name="capitalR"; version="1.3.0"; sha256="08lvncia9mdrnw84zydf1k7336xawiirh2swziqfwx3z1n172n52"; depends=[]; }; @@ -5871,11 +6037,11 @@ in with self; { captr = derive2 { name="captr"; version="0.3.0"; sha256="13j2nq9hm37g4h5fjdpz7kix0sqajdd7zssjfgil06ixfmnsijkx"; depends=[curl jsonlite]; }; capushe = derive2 { name="capushe"; version="1.1.1"; sha256="1aa76ir1kp67hiz7dr60azyc71yzslshyc640fjh0fpw0sp5kwbc"; depends=[MASS]; }; capwire = derive2 { name="capwire"; version="1.1.4"; sha256="18a3dnbgr55yjdk6pd7agmb48lsiqjpd7fm64dr1si6rpgpl4i9c"; depends=[]; }; - car = derive2 { name="car"; version="3.0-7"; sha256="11sfk1l41j27mrfy16g7b02c570n3gy9icvpcrfjh1biykqa565d"; depends=[abind carData lme4 maptools MASS mgcv nlme nnet pbkrtest quantreg rio]; }; - carData = derive2 { name="carData"; version="3.0-3"; sha256="0cg2yxzn0pdjqykr60my1fzpfkqac21fll5hv3m9w5c9sayq8swq"; depends=[]; }; + car = derive2 { name="car"; version="3.0-9"; sha256="1clh8c7mj87i4hz27l16w76dpw7k4mlnjbgm9mbrhrfkv0lpb63c"; depends=[abind carData lme4 maptools MASS mgcv nlme nnet pbkrtest quantreg rio]; }; + carData = derive2 { name="carData"; version="3.0-4"; sha256="09270j39n4jpswxqps20b12zaj8dz4rrqpk2l2j5bnf1xzizb9nd"; depends=[]; }; carSurv = derive2 { name="carSurv"; version="1.0.0"; sha256="0wv7lp10i4sdfqyizg77ghblp3pcp7wzhs946sm0wl6w00krav9j"; depends=[corpcor fdrtool mboost Rcpp survival]; }; - caracas = derive2 { name="caracas"; version="0.0.1"; sha256="1pn6qf6m32psylnw1rnp2pdkwpsa5jz0lhfwj5c0ll23a8ln7627"; depends=[reticulate]; }; - carat = derive2 { name="carat"; version="0.1.1"; sha256="1ql4lr3x6kiwq1xj671bm1y9mc8iw41j5y5796dfnw7a5251sy67"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo stringr]; }; + caracas = derive2 { name="caracas"; version="1.0.1"; sha256="157m594lyl9726cvyyw3vgbyphrmny01pd2c2yw464krfxxxv0i4"; depends=[reticulate]; }; + carat = derive2 { name="carat"; version="1.1"; sha256="0c4fbk13gra8vhqxfv0wswnfh72kjd7ppwsr3kw4w6g4xprxmnwp"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo stringr]; }; carbonate = derive2 { name="carbonate"; version="0.1.3"; sha256="0y1wjrlh0rbfl1wz9028b637gs20giifp9ykg1yir2ak7fpwbq85"; depends=[clipr details httr magick R6 RSelenium rtweet wdman yaml]; }; carcass = derive2 { name="carcass"; version="1.6"; sha256="0nhp35nxjqqmy15rf9vc0qyymy7d0v8mc84570b9nc62g5xac8xy"; depends=[arm expm lme4 MASS survival]; }; cardidates = derive2 { name="cardidates"; version="0.4.8"; sha256="1mfd5sgzswhs9rln2bgxx8c54z69xp8l5dfmx7jfh8jl43qkzpjf"; depends=[boot lattice pastecs]; }; @@ -5889,19 +6055,19 @@ in with self; { caroline = derive2 { name="caroline"; version="0.7.6"; sha256="1afxxbrd7w628l4pxdmvwbs7mbgxlhnfq3nxk2s93w47gn7r9fp7"; depends=[]; }; carpenter = derive2 { name="carpenter"; version="0.2.2"; sha256="13ahhdc6f5ngrhb7slqbxzfs3wswixh0argyr6l46cv4fdkaa80s"; depends=[dplyr lazyeval magrittr pander tibble tidyr]; }; carrier = derive2 { name="carrier"; version="0.1.0"; sha256="0bqnwnnjqjk9q0lxq6kkz9s75ss10lfyyywyyi24m8wppxpw1vqc"; depends=[pryr rlang]; }; - cartograflow = derive2 { name="cartograflow"; version="1.0.0"; sha256="1sczhvkkrdhcn2phjpsvb86ik0bgyhbgcza7dz6d4qmpl8195bs9"; depends=[dplyr g_data ggplot2 maptools plotly reshape2 rgdal rgeos rlang sp]; }; + cartograflow = derive2 { name="cartograflow"; version="1.0.3"; sha256="09n3pgm70frrx9li1djrwkf4lzcq9c1xjs037vmsb1as0xvd19a1"; depends=[dplyr ggplot2 igraph maptools plotly reshape2 rgeos rlang sf sp]; }; cartogram = derive2 { name="cartogram"; version="0.2.0"; sha256="1b6jr6sf821xa2cbm09zmnvvai6azh7p9zhz78a4yqpiwdw122sc"; depends=[packcircles sf]; }; cartography = derive2 { name="cartography"; version="2.4.1"; sha256="0pb914zbqvii95mfsqkxs2y22fj620ry2hdqbkbvh5pdq5ls549v"; depends=[classInt curl png raster Rcpp rgeos sf slippymath sp]; }; cartools = derive2 { name="cartools"; version="0.1.0"; sha256="0gc5502373f0c2m2rh6awvyfqrg1wx1f341dm2byk9znba887lgs"; depends=[animation devtools dplyr gapminder ggplot2 knitr rlist rmarkdown roxygen2 sde shiny tidyverse usethis]; }; carx = derive2 { name="carx"; version="0.7.1"; sha256="1qyqsj6pfzzqyaj6076zvgcimhl4cll6sxfb6aigm02rwfkq5gvh"; depends=[matrixStats mvtnorm nlme tmvtnorm xts zoo]; }; - caschrono = derive2 { name="caschrono"; version="2.1"; sha256="0p103r6v37c4li1j9x5mdflhx24zil8nhgpdvw5ijrvyixds0nn2"; depends=[Hmisc zoo]; }; + caschrono = derive2 { name="caschrono"; version="2.2"; sha256="0lbf7j6p5gzm4kk8sgzcmxwwzg59wp6g6l38m04609lpcsvxkd52"; depends=[Hmisc zoo]; }; cascsim = derive2 { name="cascsim"; version="0.4"; sha256="0n6frnbby1pjpx1z9lzxflmja2mg0dy99c5f7biakpaqi82x5xjb"; depends=[copula fitdistrplus moments R2HTML scatterplot3d]; }; caseMatch = derive2 { name="caseMatch"; version="1.0.8"; sha256="0bp2g0zzcspa6riinsa3bp1qwiip6z058hn2y5mw0w9xah8a685a"; depends=[]; }; - casebase = derive2 { name="casebase"; version="0.1.0"; sha256="0216qzyxv44cl9f806lal9lx4n0zzr9csx8ggyjva04h5iiqrq6w"; depends=[data_table ggplot2 survival VGAM]; }; + casebase = derive2 { name="casebase"; version="0.9.0"; sha256="0ygbisqx4g0n0rf3gjydr2j278ar1pplzy9fy8al0yq0zcp4vi6s"; depends=[data_table ggplot2 mgcv survival VGAM]; }; casen = derive2 { name="casen"; version="0.1.4"; sha256="19f52vqrzqd8mmnaf39jmsm5mhydv74gpnb4rxr3n9w07ppb77c9"; depends=[dplyr glue haven janitor labelled magrittr purrr rlang srvyr survey tibble tidyr]; }; casino = derive2 { name="casino"; version="0.1.0"; sha256="07fphn46718gr1zm0xr43mwv7yk697xrc40lxxin315cf3gm0cka"; depends=[crayon dplyr ggplot2 magrittr purrr R6 tibble tidyr]; }; cassandRa = derive2 { name="cassandRa"; version="0.1.0"; sha256="0rwqzxbflxn1iyggm3mq6pkbl61mhk4vdwqwzlwrhrvvr2ib236r"; depends=[bipartite boot dplyr ggplot2 magrittr purrr reshape2 tidyr vegan]; }; - castor = derive2 { name="castor"; version="1.5.7"; sha256="1pkwjpl7mcpn4b6cbpcznjhkblx8g5m1gfyyqjm95zkmjbnqrjj0"; depends=[naturalsort nloptr Rcpp]; }; + castor = derive2 { name="castor"; version="1.6.2"; sha256="03i69yk5nwrrw7zhahxk597cs7iamwy966qks8yd9hzl5zj5fpy6"; depends=[naturalsort nloptr Rcpp]; }; cat = derive2 { name="cat"; version="0.0-6.5"; sha256="1gv7chqp6kccipkrxjwhsa7yizizsmk4pj8672rgjmpfcc64pqfm"; depends=[]; }; cat_dt = derive2 { name="cat.dt"; version="0.2.0"; sha256="1g9058gqkk2ij29aicvvqx9yx7iwh4a58akp6qznppfln4zw9wcb"; depends=[ggplot2 Matrix Rglpk]; }; catIrt = derive2 { name="catIrt"; version="0.5-0"; sha256="09010z1q96nbnpys6mybspaqy57lvgd2cvwgnfijzgx3kl87pwnl"; depends=[numDeriv]; }; @@ -5912,7 +6078,7 @@ in with self; { catcont = derive2 { name="catcont"; version="0.5.0"; sha256="0ix6ipm3nn9aq5vxirjga2kwwfnxn4v8ggfjlg5v9027v2r8rb96"; depends=[dplyr]; }; catdap = derive2 { name="catdap"; version="1.3.5"; sha256="0fyhl69z2lznymvpzxra9qvcg85ggzkfjy68c6mzdmf1ja44d2k5"; depends=[]; }; catdata = derive2 { name="catdata"; version="1.2.2"; sha256="14kx7yi0cv6dyh9wjasb8gn6cp1bhglgwql7dc2a7lqvdcp0d5vj"; depends=[MASS]; }; - cate = derive2 { name="cate"; version="1.1"; sha256="1mw4h03gbrrf69jhw3g8a761gxrz2i7aiqdb0vc1dv75pkjspwmj"; depends=[corpcor esaBcv leapp MASS Matrix ruv sva]; }; + cate = derive2 { name="cate"; version="1.1.1"; sha256="0wqfblyr7rjx9wnpbnv5lw2zv7nw3mbdjn866l1ng779vka1wdc5"; depends=[corpcor esaBcv leapp MASS Matrix ruv sva]; }; categoryEncodings = derive2 { name="categoryEncodings"; version="1.4.3"; sha256="0ns8ml2hm41650bi8yag6w3k9nb2ky43370444cgy3i7ajpzw87w"; depends=[data_table glmnet sparsepca]; }; catenary = derive2 { name="catenary"; version="1.1.2"; sha256="1n64kq3lkaf00a2mghs67hnxvi4dp6g12pwifyx0bd418wkw9wf3"; depends=[boot broom dplyr ggplot2 tidyverse]; }; catfun = derive2 { name="catfun"; version="0.1.4"; sha256="1482rll333fvy4h58f15flfs7qrck3vk9bzpdn3hayhnmc7svmma"; depends=[broom cli DescTools epitools Hmisc magrittr rlang]; }; @@ -5920,22 +6086,23 @@ in with self; { catlearn = derive2 { name="catlearn"; version="0.7.1"; sha256="194gqx94wkl4zr01ms5g684ma328q35cfqpwa63jv98scrybrbwj"; depends=[doParallel dplyr foreach Rcpp tidyr]; }; catmap = derive2 { name="catmap"; version="1.6.4"; sha256="18449qh10jxfi8p49gmbnib5y013nfdgdblbs4n0mfs0nnzb10sx"; depends=[forestplot metafor]; }; catnet = derive2 { name="catnet"; version="1.15.7"; sha256="015qh9k0jj5plp777j3kl20601qiwadkaqrdb0483h3gwqwy828g"; depends=[]; }; - catseyes = derive2 { name="catseyes"; version="0.2.3"; sha256="1p0jnjjfl1jqqqk8q6yfsxrh30idfbss7v6lrrm25x8zrhxah0ww"; depends=[]; }; + catseyes = derive2 { name="catseyes"; version="0.2.5"; sha256="11n2kxkqv4hqymkj6lkpcvhq6325q8f5w384xf8zb71jl8vx616l"; depends=[]; }; + catsim = derive2 { name="catsim"; version="0.2.1"; sha256="1ri57jm48ydxkrla46chys86yl4w7jyi1r5rzh4r7viwjp2mrgmz"; depends=[Rcpp testthat]; }; catspec = derive2 { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; }; - cattonum = derive2 { name="cattonum"; version="0.0.4"; sha256="0w2b1v871vhmsglh2islmr1hjvxinnzaygl1rqpplr21274glj1m"; depends=[dplyr purrr Rcpp rlang tibble tidyselect]; }; - causalMGM = derive2 { name="causalMGM"; version="0.1.1"; sha256="13qx71rfc6m7mvlpwma7ks09f3mlxknxw3jlv3b4iq5pjs8f1v5r"; depends=[rJava]; }; + cattonum = derive2 { name="cattonum"; version="0.0.5"; sha256="11h9nh2i2bmd0b562l5avhwpj9ppnfmzd9nsv94cymhwn5h6nmg6"; depends=[dplyr purrr Rcpp rlang tibble tidyselect]; }; + causact = derive2 { name="causact"; version="0.3.3"; sha256="11dq6bsjbfk4zgipyhgapq2r2akh82nx3qf7wwaa38lbrrcpiy18"; depends=[coda cowplot DiagrammeR dplyr forcats ggplot2 greta htmlwidgets igraph magrittr purrr rlang rstudioapi stringr tidyr]; }; causaldrf = derive2 { name="causaldrf"; version="0.3"; sha256="16gqx8b8alwm8a4lm69qamnqr3bg2qbz0d6q4lyqyrwsk12grid6"; depends=[mgcv survey]; }; causaleffect = derive2 { name="causaleffect"; version="1.3.10"; sha256="0z7vdhm9g95s9nkyx4jdzqrap24nb63n8mr23b9gqm6s1m47sc0z"; depends=[ggm igraph XML]; }; - causaloptim = derive2 { name="causaloptim"; version="0.6.5"; sha256="0197mxaag1hmj20ljcybrwvyjjbhxi0xyybz3hiaxwcfhn5zdxld"; depends=[igraph Rcpp shiny]; }; + causaloptim = derive2 { name="causaloptim"; version="0.7.1"; sha256="0i74plwzb69pvrqfwjf7nabvj57bid3ff3gm08hgvfincv1mh6xn"; depends=[igraph Rcpp shiny]; }; causalsens = derive2 { name="causalsens"; version="0.1.2"; sha256="1xy8nybflbw6hymc15mmz27ic6hcq89wryb8q6d4zi216lwv2nww"; depends=[]; }; - causalweight = derive2 { name="causalweight"; version="0.1.3"; sha256="0bg3xxnbixz2p5qrkziwf3jh6rpcp6c1fngv0vpq1y957j3fw5f2"; depends=[hdm LARF mvtnorm np]; }; + causalweight = derive2 { name="causalweight"; version="0.2.1"; sha256="0r0a0i9y1cfmv5kkic7rpqpk4ixs6xql2k4ssmcdnh2zl5q68m30"; depends=[e1071 glmnet hdm LARF mvtnorm np ranger SuperLearner xgboost]; }; cba = derive2 { name="cba"; version="0.2-21"; sha256="0j2hbp0xlfp28gqgnkcvmb4yp1kc5m2bp5x7pr4m1pz2b1s7h7m6"; depends=[proxy]; }; cbanalysis = derive2 { name="cbanalysis"; version="0.2.0"; sha256="0h0h8krlb6rckjpcw0jbbr8pcy3jm0cszimbm56l0ca668kiix06"; depends=[]; }; cbar = derive2 { name="cbar"; version="0.1.3"; sha256="1jy52qnpjvszdd8xviv3vr00ds6bah73q0mhd4kixf68jafnxd35"; depends=[Boom bsts dplyr ggplot2 magrittr]; }; cbinom = derive2 { name="cbinom"; version="1.3"; sha256="0d9rsvs0zmm37pf1v9vbkkghi0pjlavzi5ar2cvsjapg9x4zg6wl"; depends=[Rcpp]; }; cbird = derive2 { name="cbird"; version="1.0"; sha256="0kzylylk46swd7f0j6kjyrcs3plbx9799q9kb8hjxmgh0qcjk2p6"; depends=[]; }; cblasr = derive2 { name="cblasr"; version="1.0.0"; sha256="1bz8d4124qpja4bvzn6k1swi89cfyrcpwg2nwyj4r8y0m1hbpc71"; depends=[Rcpp]; }; - cbq = derive2 { name="cbq"; version="0.1.0.0"; sha256="1h02pf0jb5qg1ww9phmm3m49ix2qgvk7kyyav6923vp1hn5y5hbj"; depends=[BH Formula Rcpp RcppEigen rstan StanHeaders]; }; + cbq = derive2 { name="cbq"; version="0.2.0.1"; sha256="0809l4qziybxhmkglj9763sjndzjl31c83ghhh2hdy93bcw75bsm"; depends=[BH Formula Rcpp RcppEigen rstan StanHeaders]; }; cbsem = derive2 { name="cbsem"; version="1.0.0"; sha256="0gc14rhfy566yw2yqzq7yk0xanpzcz7zp3km483azgk816vakbn4"; depends=[]; }; cbsodataR = derive2 { name="cbsodataR"; version="0.4.1"; sha256="1nrkh2505xkpdrvs1wlibp8md0qvlpknwiydiiqn216ipzjyp8p7"; depends=[jsonlite whisker]; }; ccChooser = derive2 { name="ccChooser"; version="0.2.6"; sha256="1vgp4zhg46hcf9ma2cmwgnfrqkmq1arh0ahyzjpfk3817vh7disc"; depends=[cluster]; }; @@ -5944,7 +6111,7 @@ in with self; { ccafs = derive2 { name="ccafs"; version="0.1.0"; sha256="1bb1127mfpz6s2hs43msjcxk56bsk6vhxznpnv0fb21r8xnx0g7m"; depends=[crul data_table httr jsonlite rappdirs raster tibble xml2]; }; cccd = derive2 { name="cccd"; version="1.5"; sha256="0m364zsrgr7mh1yhl2lqxpaf71gzq3y3pp9qgnj4spiy4iadyy7i"; depends=[deldir FNN igraph proxy]; }; cccp = derive2 { name="cccp"; version="0.2-4"; sha256="1hw0xzfdycrnhkym5va430jk1b9ywf7wbm9qyj4a62n210hk4nzc"; depends=[Rcpp RcppArmadillo]; }; - cccrm = derive2 { name="cccrm"; version="1.2.1"; sha256="180hzxm4z91hh008lysq1f0zky7qngg5z1laa1c119g4rqqcdskl"; depends=[gdata nlme]; }; + cccrm = derive2 { name="cccrm"; version="2.0.1"; sha256="15v2d4im7ji7pbi94wagg010wdgf4ly24kyczx4akcq3qd4vihff"; depends=[Deriv dplyr nlme tidyselect]; }; ccda = derive2 { name="ccda"; version="1.1.1"; sha256="1kka4vmhpcnl4skdmijzsxrfj6dgax6hhlxvp7gkqlfaazq8pzf0"; depends=[MASS]; }; ccdrAlgorithm = derive2 { name="ccdrAlgorithm"; version="0.0.5"; sha256="171k70p4qyasr385ma3cvcga2b4nbz2dfry78wqx5yb1aa6wwcyc"; depends=[Rcpp sparsebnUtils]; }; cchs = derive2 { name="cchs"; version="0.4.1"; sha256="1aq6mc3hyhp3g8yzk6y82zz8nriwmxms9lgpw06rf857im6bn5ls"; depends=[survival]; }; @@ -5955,14 +6122,15 @@ in with self; { ccrs = derive2 { name="ccrs"; version="0.1.0"; sha256="1nyw4ip9v7y6yfbfdz3bwhy4r6hpp1hiip3ycldxlkl9wrxkxgrw"; depends=[cds colorspace dplyr limSolve lsbclust msm]; }; ccss = derive2 { name="ccss"; version="1.0"; sha256="0m2facn6kwxrjxg9a8z0pjnhp0rkgw6nxj6sac93ig24zygx4380"; depends=[]; }; cctools = derive2 { name="cctools"; version="0.1.2"; sha256="03lp9pa9qr2hi584ivvmswxmwjw1c3a6xqladpqldjhzvzpxvcwi"; depends=[qrng Rcpp RcppArmadillo]; }; - cdata = derive2 { name="cdata"; version="1.1.6"; sha256="06a5bj9nzafp6aamvnjij6xf7flqp2b01rpmir9chg05rvkjhb2b"; depends=[rqdatatable rquery wrapr]; }; + cdata = derive2 { name="cdata"; version="1.1.7"; sha256="0liwnq4hvgsprkbk9lb4aldr2s9zjy65myj0dpfr7kkjkzd9akxq"; depends=[rqdatatable rquery wrapr]; }; cdb = derive2 { name="cdb"; version="0.0.1"; sha256="1rdb4lacjcw67apdyiv7cl1xvv9d1mrzck1qk605n6794k7wf2ys"; depends=[bitops]; }; + cdcatR = derive2 { name="cdcatR"; version="1.0.1"; sha256="117pw56k44qfz56nd659f6zrsxipk2kj5py96ql3bmds91f96j1h"; depends=[cowplot doSNOW foreach GDINA ggplot2 NPCD]; }; cdcfluview = derive2 { name="cdcfluview"; version="0.9.1"; sha256="0j892zwg7y9gm057n1nk7r08wa8b611dzbanphfplh33j66rm4yg"; depends=[dplyr httr jsonlite MMWRweek purrr readr sf tibble units xml2]; }; cdcsis = derive2 { name="cdcsis"; version="2.0.3"; sha256="0hv52valyig3zzywm3058c5nxb2n7y3j2vfibxdbfg8414wwapd9"; depends=[ks mvtnorm Rcpp]; }; cde = derive2 { name="cde"; version="0.4.1"; sha256="19aifi2wh3hi929bf15v96z6gbzawgawjdipvx1v95krzij8fl2n"; depends=[data_table viridisLite]; }; cder = derive2 { name="cder"; version="0.2-2"; sha256="0aw2c170sqx2y4iz16avqijahwxlsaz590mxvsx4bicfd8nrcynk"; depends=[curl dplyr glue lubridate readr rlang stringr tibble]; }; cdfquantreg = derive2 { name="cdfquantreg"; version="1.2.2"; sha256="094mk2hvxww2lndx5wkw368ynqx6klbdwl30d1yv7kqmr2yy7388"; depends=[Formula MASS pracma]; }; - cdlTools = derive2 { name="cdlTools"; version="0.14"; sha256="0zf00y8qcklz2yp7vx6mjvx2h2p4kq44r51z4qy88kq9v62rqz3k"; depends=[httr raster]; }; + cdlTools = derive2 { name="cdlTools"; version="0.15"; sha256="1p5d48v6nwlrgqqi0sg98zfhiycjcha6g12a7515xrvp6f5p28jn"; depends=[httr raster]; }; cdlei = derive2 { name="cdlei"; version="1.0"; sha256="1zsgryrwr1nqhcyizrh67lm953b87ih9l4rvc6i59s4vg2ph1ph1"; depends=[]; }; cdom = derive2 { name="cdom"; version="0.1.0"; sha256="00xqqqhskjlkz8ii7kqyabxk8995w7g9jiz1isyqjpwg8nsa3x28"; depends=[broom ggplot2 minpack_lm tidyr]; }; cdparcoord = derive2 { name="cdparcoord"; version="1.0.1"; sha256="0ym2ypw4bsvmx9q4vskrq4pdd92y47vs8pay8san40rgzwqr2agb"; depends=[data_table freqparcoord partools plotly]; }; @@ -5972,27 +6140,29 @@ in with self; { ced = derive2 { name="ced"; version="1.0.1"; sha256="0xrf3y1cr4dylhh2xr1gggnwdwn7riz37g6yw55hyryg03hxkms6"; depends=[Rcpp]; }; ceg = derive2 { name="ceg"; version="0.1.0"; sha256="01la7kv0a3inc9vy5x010ysicfiv404bqfgs8csvqixviap9rd74"; depends=[graph Rgraphviz]; }; celestial = derive2 { name="celestial"; version="1.4.6"; sha256="1gls0qvr8mxz79lsmk76v253f747g0cqys8p8wjmpijs8r0pyr4z"; depends=[NISTunits pracma RANN]; }; + cellOrigins = derive2 { name="cellOrigins"; version="0.1.3"; sha256="0nxhyz9bz0f598wpr10hm1d0zx83450xf9jkrl279v46x8sx36n4"; depends=[iterpc]; }; cellVolumeDist = derive2 { name="cellVolumeDist"; version="1.3"; sha256="00hq3nbfbnmg2lhrqd0glkh5ld50fv54ll3q6v875d1lgs44sln1"; depends=[gplots minpack_lm]; }; cellWise = derive2 { name="cellWise"; version="2.1.1"; sha256="10cx5nmqcxx6prwkcpv7av10qcl4qygra9sdnbavbvwgvf46l28z"; depends=[ggplot2 gridExtra matrixStats Rcpp RcppArmadillo reshape2 robustbase rrcov scales svd]; }; cellranger = derive2 { name="cellranger"; version="1.1.0"; sha256="16fgi3annn34c3cxi0pxf62mmmmxi21hp0zzlv7bkfsjqy4g4f2x"; depends=[rematch tibble]; }; celltrackR = derive2 { name="celltrackR"; version="0.3.1"; sha256="1mnqaklc3rkx5mm41n99ky11bjs4l0dppapkwfvkyg3a0h0xzsbb"; depends=[ellipse]; }; - cem = derive2 { name="cem"; version="1.1.19"; sha256="17i6jp6czjgchg16zndnh828hs8v28x25gy5f8mkzfhc5pfjd8mq"; depends=[combinat lattice MatchIt nlme randomForest]; }; + cem = derive2 { name="cem"; version="1.1.20"; sha256="058yg297x5i8s9lzfljrn568a8mpx7dcnqhv3b02a6cpnqx0n4py"; depends=[combinat lattice MatchIt nlme randomForest]; }; + cemco = derive2 { name="cemco"; version="0.1"; sha256="00x9313rlxjb1lrfgx394awyhn2ivkn291q6sb5rpmghsvwq0qpb"; depends=[clusteval doParallel foreach MASS mclust mvtnorm nnet rootSolve]; }; cenGAM = derive2 { name="cenGAM"; version="0.5.3"; sha256="0qic2g2bq24k9jimxdk8g7bsmi4br2r6159ipdhh5ym81ji3sf5p"; depends=[mgcv]; }; - cenROC = derive2 { name="cenROC"; version="1.0.0"; sha256="1y7l4pmvky41n22l35rk984v2wmd3ss0gc08nijxb78nxx3kvs7p"; depends=[condSURV]; }; + cenROC = derive2 { name="cenROC"; version="1.2.0"; sha256="07ja3yyqmb9cs76if32aksgcwki3y6nh13lvn9j0bdgbgqx65f3r"; depends=[condSURV icenReg Rcpp RcppEigen survival]; }; censCov = derive2 { name="censCov"; version="1.0-0"; sha256="0i9vmyi12f1m5xnrl4cxk3z9qv7ymzxsyf4gbnpg1ph63yfnhv3g"; depends=[survival]; }; censNID = derive2 { name="censNID"; version="0-0-1"; sha256="1ij5ci6nkqf0rq51vyh4jw5sr3y46yndfkjmwl78ppdj66axxir5"; depends=[]; }; - censReg = derive2 { name="censReg"; version="0.5-30"; sha256="1zpbswyl1l7z4rfb1rws66g5vf150vj4d1y54681lvvbawhlnym3"; depends=[glmmML maxLik miscTools plm sandwich]; }; + censReg = derive2 { name="censReg"; version="0.5-32"; sha256="044f3a1vkr318drcipv9zz5qsx85ld95x7fsy0w6cpc6zlkwxsyb"; depends=[glmmML maxLik miscTools plm sandwich]; }; censorcopula = derive2 { name="censorcopula"; version="2.0"; sha256="16pk4xlpliif02qznrhvl8qmrr6k4kknygqxcm83nsjxy6dcyga8"; depends=[copula]; }; censusGeography = derive2 { name="censusGeography"; version="0.1.0"; sha256="1ncgd05ml571g3vy1g4p5xxg2bm08hbb6d5r3hpz7frn7w3l8l1d"; depends=[qdapTools]; }; censusapi = derive2 { name="censusapi"; version="0.6.0"; sha256="03h1np7v539mgnxlmwp1d5jv3nlm2fsylw53hqxd736q3h2rjz0s"; depends=[httr jsonlite]; }; censusr = derive2 { name="censusr"; version="0.0.4"; sha256="1n9571fyr46wj1dcxc2xgns9865655yzlq7yfz8im014wh0ycwqc"; depends=[dplyr httr stringr]; }; - censusxy = derive2 { name="censusxy"; version="0.1.2"; sha256="0cd1fylsxmqi4lp39zliw8v3hyka85jnpq492jfg43y65rdbj5mg"; depends=[dplyr httr readr rlang sf tibble tidyr]; }; + censusxy = derive2 { name="censusxy"; version="1.0.0"; sha256="0wvr109hv2injkg2kh6n82wik6pd25m4jx3yiqpy07dmh6ddd5xp"; depends=[httr]; }; censys = derive2 { name="censys"; version="0.1.0"; sha256="0r0yvaidn0qn96hx461415hywsjfgaz9wvvdssx7w97v2ndnk9sy"; depends=[httr jsonlite purrr stringi]; }; centiserve = derive2 { name="centiserve"; version="1.0.0"; sha256="1m6gqz2rk7023340laa5pc0ncbfka2qi9ajvh65fwijd7xvv3n5c"; depends=[igraph Matrix]; }; centralplot = derive2 { name="centralplot"; version="0.1.0"; sha256="1slzvbm1vvgj1gkcx9pb46fz8q55vfyqrxsvx4qzi5kp7d9h4dy2"; depends=[ggplot2]; }; centrifugeR = derive2 { name="centrifugeR"; version="0.1.4"; sha256="1gky1j5glgigpj21hhm6mkc2xvvb9q8k3y1p4zn40r82lvggpnhz"; depends=[pracma]; }; cents = derive2 { name="cents"; version="0.1-41"; sha256="03ycbd0c8b7danbblaixg6sm7msr9ixkanqswczqa8n2frhjfgj0"; depends=[]; }; - cepR = derive2 { name="cepR"; version="0.1.0"; sha256="1yqny6vgsjbrfxlk965pyk38n87ylf4513kbaljmgggrlyaz0qap"; depends=[dplyr httr magrittr purrr tibble]; }; + cepR = derive2 { name="cepR"; version="0.1.1"; sha256="0ds3hv1va3179i37n7fp4120bq7rmj2hpxrbnslyjgw44hr4p900"; depends=[httr magrittr purrr tibble]; }; cepp = derive2 { name="cepp"; version="1.7"; sha256="01hvm6586xnb1crvk7brqh3dm2j44ia5lrl5swnf6pb682yskbq0"; depends=[randtoolbox trust]; }; cepreader = derive2 { name="cepreader"; version="1.1-3"; sha256="0jqmz3gm6fprfjjzw22qdk055csvy1np7vm0mjjsnpim7js5xvc2"; depends=[]; }; ceramic = derive2 { name="ceramic"; version="0.6.0"; sha256="0n0l1b7gb05kqjrh696faq868q3nbwlg34y6wgr0w205kdq6qs17"; depends=[curl dplyr fs glue jpeg magrittr png purrr rappdirs raster reproj rlang slippymath sp spex tibble]; }; @@ -6000,103 +6170,111 @@ in with self; { cetcolor = derive2 { name="cetcolor"; version="0.2.0"; sha256="0kygdcr9ldanr0z4qpygwh0padki7s2ad0j6myky601g4228z79q"; depends=[]; }; ceterisParibus = derive2 { name="ceterisParibus"; version="0.4.2"; sha256="0hxklydsqb69y5sv2hanp5ja9k0063swf5si1j6gcj15lp7phpif"; depends=[DALEX ggplot2 gower knitr]; }; cfa = derive2 { name="cfa"; version="0.10-0"; sha256="12z58y4ls9m58wpj1xa4ir2p2apzxaskps05sxy2946m24i71zfk"; depends=[]; }; - cfdecomp = derive2 { name="cfdecomp"; version="0.1.0"; sha256="1cgm55z05ksd1zga8qhk8z2cskaxgs9rbm0nnz9wyphaq42vsiq6"; depends=[]; }; - cffdrs = derive2 { name="cffdrs"; version="1.8.6"; sha256="1acj27ip4grrji5zyx7hv5b6x3bx87f29id9rnn19gj35mj5a9fl"; depends=[data_table doParallel foreach geosphere raster rgdal spatial_tools]; }; + cfdecomp = derive2 { name="cfdecomp"; version="0.2.0"; sha256="04cbdpp1smbby5nkxa8slaxj970zcqrzy32qq9siz9gq4cs46vr6"; depends=[]; }; + cffdrs = derive2 { name="cffdrs"; version="1.8.18"; sha256="15bl1sfm2yz897b5w0x0kvyf2z3rx32n436gsnsx5gd32v5v18w1"; depends=[data_table doParallel foreach geosphere raster rgdal]; }; cfma = derive2 { name="cfma"; version="1.0"; sha256="006z5g3rqpg44jqdf6ivyxr47sxm5cd9cqhayfi8qk73xx5w4lv9"; depends=[]; }; + cfmortality = derive2 { name="cfmortality"; version="0.3.0"; sha256="0dgwv89fzylznc6jr41ixzfs1gfs3np4gf46bk6pcd09l1kbx3lc"; depends=[]; }; cg = derive2 { name="cg"; version="1.0-3"; sha256="1kbyal1sicbr10yvxpwgcij710kqpi23vmndp9kyfzn3k8zfird3"; depends=[Hmisc lattice MASS multcomp nlme rms survival VGAM]; }; cgAUC = derive2 { name="cgAUC"; version="1.2.1"; sha256="172f9rkfhv4xzwpw8izsnsdbcw9p3hvxhh0fd8hzlkil7vskr3k8"; depends=[Rcpp]; }; + cgal4h = derive2 { name="cgal4h"; version="0.1.0"; sha256="0ghcwjfqlhqysnl8mgz6zp7dyqh8pvnpvphwjwk6zqi24n3nhac2"; depends=[]; }; cgam = derive2 { name="cgam"; version="1.15"; sha256="0bgvsjhafhhkhdq2b1dvji72913wrhi05adzrsnhrk7vwf8xxjki"; depends=[coneproj lme4 Matrix svDialogs]; }; cgdsr = derive2 { name="cgdsr"; version="1.3.0"; sha256="07yc819hkabpzzh0g0cbqza6bcfy67b2marrzz1lj97f9iba78ja"; depends=[httr R_methodsS3 R_oo]; }; cgh = derive2 { name="cgh"; version="1.0-7.1"; sha256="1fgjz43bgnswlyvrm669x697lybq3jyzz4l8ppgxqwxp4p4d2yqn"; depends=[]; }; cghRA = derive2 { name="cghRA"; version="1.6.0"; sha256="16dlw27s8wckc75xcwc2g74pw6bar0y0ii3h53w1hql05d4f7sb8"; depends=[DNAcopy Rgb]; }; - cglasso = derive2 { name="cglasso"; version="1.1.1"; sha256="0d3r6jxrh1z4qnpxcfvwd7bcayzya2dhfl3hpfqd2dzm8fwwc2lf"; depends=[igraph MASS]; }; + cglasso = derive2 { name="cglasso"; version="1.1.2"; sha256="1z7scwbcn63iah9aih565rd4lyi6n2y5k2593w885dh1n6j5ss0i"; depends=[igraph MASS]; }; cglm = derive2 { name="cglm"; version="1.1"; sha256="1r3wrds5lbirzzqsi12prwykxa5361jb95pq7j95nlp6y8kcb94j"; depends=[data_table nleqslv Rcpp RcppArmadillo]; }; - cgmanalysis = derive2 { name="cgmanalysis"; version="2.6.1"; sha256="0jrsn5i04gaxkcgjyrmlpx66gw27smq7r0s2v1j7hfd15q875sz6"; depends=[ggplot2 lubridate pastecs pracma readr readxl XML zoo]; }; + cgmanalysis = derive2 { name="cgmanalysis"; version="2.7"; sha256="0gwlkk0s3xvzy1kgl0hn163rg387y592h6p3f9bgmc24mznwadd4"; depends=[ggplot2 lubridate pastecs pracma readr readxl XML zoo]; }; cgraph = derive2 { name="cgraph"; version="6.0.1"; sha256="0hmp07iz7ya3j8jaghm4pa0b84lsinc48rsibbh47sd3i6pkxfik"; depends=[]; }; cgwtools = derive2 { name="cgwtools"; version="3.0.1"; sha256="15qllfcgls6hpj51xa7mklr5ppxrs2avbiwq3y4bqbb20fld78w3"; depends=[]; }; chandwich = derive2 { name="chandwich"; version="1.1.2"; sha256="196k13qg9kl94yki989ncx2mrvvj82vv8mi453s8lqmv9s875841"; depends=[numDeriv]; }; changedetection = derive2 { name="changedetection"; version="0.2.0"; sha256="0j8x7qyna7qgjhx56yxav1g3wj3r47zvx2hivybsjis2gqbl82hr"; depends=[glmnet L1pack Rdpack]; }; changepoint = derive2 { name="changepoint"; version="2.2.2"; sha256="1jbki95pck10phpxna0b4i79hhl912zqi5ii9mjqb673y64dszkj"; depends=[zoo]; }; changepoint_geo = derive2 { name="changepoint.geo"; version="1.0.1"; sha256="1jlixdrq97n6bh09jq3hamlwkqfqbmqs14kr8swx20f8fvfr3fj2"; depends=[changepoint changepoint_np ggplot2 Rdpack]; }; - changepoint_mv = derive2 { name="changepoint.mv"; version="1.0.1"; sha256="1cv7gkfzzb8qmm49ygrkcsvlj3hx41wj8h2msa9rrawj33awj1c6"; depends=[assertive ggplot2 Rcpp Rdpack reshape2 tbart zoo]; }; - changepoint_np = derive2 { name="changepoint.np"; version="1.0.1"; sha256="0ai5p77x3261ps22x8z00qiv1d3z2mf8qgi0bfc5bqnnzf44k0c2"; depends=[changepoint Rdpack zoo]; }; + changepoint_mv = derive2 { name="changepoint.mv"; version="1.0.2"; sha256="0bji0m4ks2lf9s1rnq58w97ywpgs3m9rpm5p5f70f0kn33yffrix"; depends=[assertive ggplot2 Rcpp Rdpack reshape2 tbart zoo]; }; + changepoint_np = derive2 { name="changepoint.np"; version="1.0.2"; sha256="10a1bg9q4phdkc2bs6mav7wzmv3jgmqvpdknx48kqxvgmrln5q3z"; depends=[changepoint Rdpack zoo]; }; changepointsHD = derive2 { name="changepointsHD"; version="0.3.3"; sha256="1wdhmkg21kb5jd95a0aqqp2qgdkndc69rbdxjf792gq8f1rigarh"; depends=[Rcpp RcppArmadillo]; }; changepointsVar = derive2 { name="changepointsVar"; version="0.1.0"; sha256="0kj9m9jik1dm5fx4c4hb559f5irpl1mvxk4wwajd5577a2fdqxb5"; depends=[lars MASS]; }; changer = derive2 { name="changer"; version="0.0.3"; sha256="1pmnspadkshz7z9f275vks1xjh6a9k37h7j51dqdjrqilzq7y6sf"; depends=[available devtools git2r]; }; charlatan = derive2 { name="charlatan"; version="0.4.0"; sha256="0hrc4kdympi05j6gx0x6vy4jb1mvxxi7pcrnpzcp8vxvd6r3wjmq"; depends=[R6 tibble whisker]; }; chartql = derive2 { name="chartql"; version="0.1.0"; sha256="108csn7q8qrjhiss54f5bliv3av7psq7kfryspajbdb6wm9ciz3p"; depends=[ggplot2 stringr]; }; + cheatR = derive2 { name="cheatR"; version="1.2.1"; sha256="0ph7bw2b3frmq6z7qb99pds8j81dbx0bxkbhb55mczqa7n0k50hy"; depends=[ngram purrr R_utils textreadr]; }; cheb = derive2 { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; }; chebpol = derive2 { name="chebpol"; version="2.1-2"; sha256="126cgqnl9jy332q0ywg9dr11d4q1aichwwakb1xcrxrqw2j26zzi"; depends=[geometry]; }; checkLuhn = derive2 { name="checkLuhn"; version="1.1.0"; sha256="1s1ix5n98bcbzcvrz5h19sk9pchdvrhpy3ppmw96ys8vylzm58mv"; depends=[dplyr stringr]; }; checkarg = derive2 { name="checkarg"; version="0.1.0"; sha256="0rkdjs2c4yx9laqgayxz57bwxhwgdh6ndrr4i3b1kh31lcmk1xc6"; depends=[]; }; - checkdown = derive2 { name="checkdown"; version="0.0.3"; sha256="0bl8207lyjgjcrd55jn0dlrkbhk7qavxxrixni8jgsf5v83ydkrm"; depends=[knitr markdown]; }; + checkdown = derive2 { name="checkdown"; version="0.0.5"; sha256="1xd4czhgczjc78wcx8mz9g35ba9q6askda4d9m95sjq0j8pwlkis"; depends=[knitr markdown]; }; checkmate = derive2 { name="checkmate"; version="2.0.0"; sha256="193gkifr9spp0x0rwnjq1spdhjkfkh4mv27iklskcj604075phhd"; depends=[backports]; }; checkpoint = derive2 { name="checkpoint"; version="0.4.9"; sha256="0kwbfkk3zm60w993gvwxxrikbxjdw4sgjrs9h18v3yw19kw1q9m5"; depends=[]; }; checkr = derive2 { name="checkr"; version="0.5.0"; sha256="14hkpfbw5ibdwz2jygir2f2bb2qgrj62gn3449n4dif31nswaj2f"; depends=[err]; }; cheddar = derive2 { name="cheddar"; version="0.1-636"; sha256="1lf39v0p583jgiyb02vx0rgbwzmmhgkfpwjib2fzh9ffbs8bfk66"; depends=[]; }; - cheese = derive2 { name="cheese"; version="0.0.3"; sha256="0li828ijwgiggn80s3y1x6d7nblifzhc05biln9knvg2g3d22ca7"; depends=[dplyr forcats kableExtra knitr magrittr purrr rlang stringr tibble tidyr tidyselect]; }; + cheese = derive2 { name="cheese"; version="0.1.0"; sha256="11nhfbif5hcfv3389fl74ggyw73xwh013zsin57azrp5mbj1wml5"; depends=[dplyr forcats kableExtra knitr magrittr purrr rlang stringr tibble tidyr tidyselect]; }; chemCal = derive2 { name="chemCal"; version="0.2.1"; sha256="1kq82x57qm68im6lyqjqmh4p34s4y7fn5v6ymclxjr47mdv8npb5"; depends=[]; }; chemmodlab = derive2 { name="chemmodlab"; version="1.0.0"; sha256="0lzibshhfz52m61xldf0xq4cc1xx64fjlw18hlkiv65dj3gcj2mh"; depends=[caret class e1071 elasticnet foreach lars MASS nnet pls pROC randomForest rpart tree]; }; chemometrics = derive2 { name="chemometrics"; version="1.4.2"; sha256="0shqns0n964pfwnd0q5sadglrlpgs4g5fbv45fsj9p37l4pq61dp"; depends=[class e1071 lars MASS mclust nnet pcaPP pls robustbase rpart som]; }; cherry = derive2 { name="cherry"; version="0.6-13"; sha256="1bpahdymkc2w6mc5pjyq4q59iwzskw37swx3sw4rnbmnhzhwaf8n"; depends=[bitops hommel lpSolve Matrix]; }; - chest = derive2 { name="chest"; version="0.3.1"; sha256="0m37x5jqlpfr3gbfc3yacwv2aqzcszjxrav7janxsckpxngxrarb"; depends=[broom dplyr forestplot ggplot2 magrittr MASS speedglm survival tibble]; }; + cherryblossom = derive2 { name="cherryblossom"; version="0.1.0"; sha256="1fn0xi65y0w1gmyrjlh8lb2is34r2dc5bym0ynrgjv8h595nzhwp"; depends=[]; }; + chest = derive2 { name="chest"; version="0.3.3"; sha256="09xk6nj8wx7h56mkb9qsl1gar0q5z0qd9r0kpnm237l6pca3qrbx"; depends=[broom dplyr forestplot ggplot2 MASS speedglm survival tibble]; }; chi = derive2 { name="chi"; version="0.1"; sha256="1y91mwahj4j2wz0y5k5vdpq7ygq834h8jkn37n74lqnwvv1968rr"; depends=[]; }; chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; }; - chicane = derive2 { name="chicane"; version="0.1.1"; sha256="1d2rvaxdcambawf8l4sn566nr3s8xgf8nfpqa5n6lazvik8vb7kb"; depends=[data_table doParallel foreach gamlss gamlss_tr iterators MASS]; }; + chicane = derive2 { name="chicane"; version="0.1.2"; sha256="080saqwhw54g9frrqr2z8s55d9asq3xjfy95w4y4npvd16a79nil"; depends=[bedr data_table doParallel foreach gamlss gamlss_tr iterators knitr MASS rmarkdown]; }; childesr = derive2 { name="childesr"; version="0.1.2"; sha256="170xjsk0sjwlw3w3nf9jmq4yd6ivbznmjhqq2np5grn1rwlswawb"; depends=[DBI dbplyr dplyr jsonlite magrittr purrr RMySQL]; }; childhoodmortality = derive2 { name="childhoodmortality"; version="0.3.0"; sha256="1ixd10jyzgr1ssnjas35kngpsqyjzl73wwpvcspv06cn12sv2b8d"; depends=[dplyr matrixStats plyr]; }; childsds = derive2 { name="childsds"; version="0.7.4"; sha256="1dyzidmbr7608y65kymf7x5s19qjsz9hxzfv51ml1kaymml1hbf3"; depends=[boot class dplyr gamlss gamlss_dist magrittr purrr purrrlyr reshape2 tibble tidyr VGAM]; }; chilemapas = derive2 { name="chilemapas"; version="0.2"; sha256="0s2f5bhr7d64rlk4x7cv6zjrbnf5g86lgg026svgrdxvs1vqa4as"; depends=[dplyr magrittr rlang rmapshaper sf stringr]; }; - chillR = derive2 { name="chillR"; version="0.70.21"; sha256="0sj97c4sgmywr5fl5csjyk9g6sy4a6vw2ryvg0idsfidklrdfvxd"; depends=[assertthat dplyr fields ggplot2 httr jsonlite Kendall pls plyr R_utils raster RCurl readxl reshape2 rlang RMAWGEN sp XML]; }; - chinese_misc = derive2 { name="chinese.misc"; version="0.2.1"; sha256="17sffxjpga8mq8xfxhas9jqj71bb80ayz4m2dgnmg1w6bb3p7bsp"; depends=[jiebaR Matrix NLP purrr slam stringi tm]; }; + chillR = derive2 { name="chillR"; version="0.70.24"; sha256="1a99hxf89yyhcma5002xhp1nvcsgbsz52zg1a5vhhgwlzpkr50s0"; depends=[assertthat dplyr fields ggplot2 httr jsonlite Kendall pls plyr R_utils raster RCurl readxl reshape2 rlang RMAWGEN sp XML]; }; + chinese_misc = derive2 { name="chinese.misc"; version="0.2.2"; sha256="1r0sg0pfnlpa3q6czjvlh04xdwl6gfw54ykacnxznzzzr528r3mi"; depends=[jiebaR Matrix NLP purrr slam stringi tm]; }; chipPCR = derive2 { name="chipPCR"; version="0.0.8-10"; sha256="1mff7n7ga4sfwvcq7zkjkrl68nybnm2zkn37hmxvnw9yl3ls9lnw"; depends=[lmtest MASS outliers ptw quantreg Rfit robustbase shiny signal]; }; + chirps = derive2 { name="chirps"; version="0.1.2"; sha256="0lvrlpsvncyyzli84ivzmknk0g5g3lhciwl35wmrgyxf08bs4bqb"; depends=[crul jsonlite sf]; }; chisq_posthoc_test = derive2 { name="chisq.posthoc.test"; version="0.1.2"; sha256="0lvj3jqhaj1ijjpzvpq3fn3a1y3fgv69pxh91j6k958pn6vmp40i"; depends=[]; }; - chk = derive2 { name="chk"; version="0.4.0"; sha256="0d7vjbz8s77r3s8i78bgzb7vgni0ryr9jh0h5nr20aqig68dr82k"; depends=[lifecycle rlang]; }; + chk = derive2 { name="chk"; version="0.5.1"; sha256="09qw8i97mbfgymx5nf6iw4s46hqyaa7434y3bwkzmqjh9f18xfmh"; depends=[lifecycle rlang]; }; chlorpromazineR = derive2 { name="chlorpromazineR"; version="0.1.2"; sha256="0zg3xjq67na98n4amsm5v4cn9ba1k7c0lb7k2lvxa3n1w7rndpw3"; depends=[]; }; - chngpt = derive2 { name="chngpt"; version="2020.2-26"; sha256="103fwjxm1z9k9l7nw8ckj8zjwlk9dkqrk58gn8hpzd44rxv1476c"; depends=[boot kyotil MASS survival]; }; + chngpt = derive2 { name="chngpt"; version="2020.5-21"; sha256="0lh2jznkiv74a88kyqxvxl424chgwghd9jl9z1kx76gkjg8ggr0x"; depends=[boot kyotil MASS survival]; }; choiceDes = derive2 { name="choiceDes"; version="0.9-3"; sha256="1nsc8p4svfc6z7ckffl24c0acnaxi6cnpz7jq03vzn6spxvpjcmw"; depends=[AlgDesign]; }; cholera = derive2 { name="cholera"; version="0.7.0"; sha256="0ja013k431vd0sjy74y2mlrii46rbwb5x886jaza4ihb48mgz7ah"; depends=[deldir ggplot2 HistData igraph KernSmooth pracma RColorBrewer sp threejs TSP]; }; choplump = derive2 { name="choplump"; version="1.0-0.4"; sha256="0fn6m3n81jb7wjdji4v04m53gakjfsj3ksm546xxz5zm7prk237s"; depends=[]; }; chopthin = derive2 { name="chopthin"; version="0.2.2"; sha256="1ixmgq6igd2ji88qba7scny1j8rrizcf76dk4ymk3hah5dln97fz"; depends=[Rcpp]; }; chords = derive2 { name="chords"; version="0.95.4"; sha256="1v6zvl1mv9fyf6hx1fpbj3i7s893n4y1w4j9rw1arps006qz2jqn"; depends=[MASS Matrix]; }; - choroplethr = derive2 { name="choroplethr"; version="3.6.3"; sha256="0m6kyrgnv5s1q2ncc63rfxcwqdqx5adqk14q57ss4r84i14dm5yb"; depends=[acs dplyr ggmap ggplot2 gridExtra Hmisc R6 RgoogleMaps stringr tigris WDI]; }; + choroplethr = derive2 { name="choroplethr"; version="3.7.0"; sha256="06nj88vhwrjyqr0smvkx8cbcjvl1sjfc3al8qna3l8nxwj7vyplk"; depends=[acs dplyr ggmap ggplot2 gridExtra Hmisc R6 RgoogleMaps rvest stringr tidycensus tidyr tigris WDI xml2]; }; choroplethrAdmin1 = derive2 { name="choroplethrAdmin1"; version="1.1.1"; sha256="13ljs21hdhiv6n4napmk1gjnjhpll6j5wyijzv4xnnbi1y3ns7a9"; depends=[ggplot2]; }; choroplethrMaps = derive2 { name="choroplethrMaps"; version="1.0.1"; sha256="0ghqb2d1h0qkbcsll6ck2qk5sfvdwsrlh3phlbsjbak30832j7fr"; depends=[]; }; - chorrrds = derive2 { name="chorrrds"; version="0.1.9.4"; sha256="1sdj2x6qiqp787v1xzwixjaidi2pyg42snrrkyhmnflfksgdbmys"; depends=[dplyr forcats magrittr purrr rvest stringr xml2]; }; + chorrrds = derive2 { name="chorrrds"; version="0.1.9.5"; sha256="045m3hqfk63zlb44s07wflaawzn030fg0nqck4w852m52a0r1z5v"; depends=[dplyr forcats magrittr purrr rlang rvest stringr xml2]; }; christmas = derive2 { name="christmas"; version="1.0.0"; sha256="06a2r56vh7m6j0kfbf3b3aapn52x693fzdn29sxfvyackdk5dhj3"; depends=[animation]; }; chromer = derive2 { name="chromer"; version="0.1"; sha256="0fzl2ahvzyylrh4247w9yjmwib42q96iyhdlldchj97sld66c817"; depends=[data_table dplyr httr]; }; chromoMap = derive2 { name="chromoMap"; version="0.2"; sha256="1ljjwkv7rdy1mcrkb8dd5lfkg54gxzclsjvla4qnc8j5hmfp0p8g"; depends=[htmltools htmlwidgets]; }; chromoR = derive2 { name="chromoR"; version="1.0"; sha256="1x11byr6i89sdk405h6jd2rbvgwrcvqvb112bndv2rh9jnrvcw4z"; depends=[gdata haarfisz]; }; - chron = derive2 { name="chron"; version="2.3-55"; sha256="09gbs7c1ynlg0kl1m6nkbn75ysk16g13r17snnaws64qwywiywqg"; depends=[]; }; - chronosphere = derive2 { name="chronosphere"; version="0.2.2"; sha256="11vc7ids362jm1xd4z4mfmjbpsxw8wmjnn26ivy7n42xlqqzzpnf"; depends=[raster sp]; }; + chromseq = derive2 { name="chromseq"; version="0.1.3"; sha256="0m9dnm50iw176ffn6syd3538hxmjhkrxfzaf13210q100wk0lgz2"; depends=[]; }; + chron = derive2 { name="chron"; version="2.3-56"; sha256="0p9zz96jfyf139924hdwkzhr8knkjvx6547ac53rknm3a6wwngl6"; depends=[]; }; + chronosphere = derive2 { name="chronosphere"; version="0.3.1"; sha256="0n6xqnlwcraxdr9d37nnllr8rjq6awng60zmy0skjmsj7xp6x71v"; depends=[raster sp]; }; chunkR = derive2 { name="chunkR"; version="1.1.1"; sha256="1kw3hsx5k4cdicx0hc1v0mf2nzvqg95shx2xv05vb2pass48qw48"; depends=[Rcpp]; }; chunked = derive2 { name="chunked"; version="0.5.0"; sha256="1b28hqngdkkn4wnkd3b8vcaf3md6jan73nbx240v6s2nj2anlnc8"; depends=[DBI dplyr LaF progress rlang]; }; - ciTools = derive2 { name="ciTools"; version="0.5.1"; sha256="02jgi09vkzsan47mvg65ciqc1q4vmrl14v2i5bsaqxbvxwd65lww"; depends=[arm boot dplyr lme4 magrittr MASS survival tibble]; }; - cicerone = derive2 { name="cicerone"; version="1.0.1"; sha256="02dzd82vldn1k5i0j8kw1pp1jwakqnsvd1k88czh3qqfaa4wsrq5"; depends=[assertthat R6 shiny]; }; + chunkhooks = derive2 { name="chunkhooks"; version="0.0.1"; sha256="1kps7widb9ql01njy8xl03lplrybl2ci5fvx5vzzwnwps6s4y3fm"; depends=[knitr measurements prettyunits]; }; + ciTools = derive2 { name="ciTools"; version="0.5.2"; sha256="1q0kh8fsi14dvqr646hn6j9sfjq5b7m89i4r8br5p33wfgqpwlq4"; depends=[arm boot dplyr lme4 magrittr MASS survival tibble]; }; + cicerone = derive2 { name="cicerone"; version="1.0.3"; sha256="01swq28pj3p34b1k1gp05wvzdzsivj10fl7rwq0bg4rpawxfgs55"; depends=[assertthat R6 shiny]; }; cifti = derive2 { name="cifti"; version="0.4.5"; sha256="092334lcpkzv52bg53hzx64dnrwq67f3p9fzwchmafx1l46xrqx9"; depends=[gifti oro_nifti R_utils xml2]; }; cimir = derive2 { name="cimir"; version="0.4-0"; sha256="0sp8hd354hnrmbyn3gm2sgvkf32n7kqpg9bc56583ibyfc8s4gwm"; depends=[curl dplyr glue jsonlite purrr rlang stringr tidyr]; }; cin = derive2 { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; }; cinterpolate = derive2 { name="cinterpolate"; version="1.0.0"; sha256="1aw6hs41xin2hhgmi4pr5510v4sn6x735lachpc5gpbxch5h3f82"; depends=[]; }; cir = derive2 { name="cir"; version="2.0.0"; sha256="0ycjnbikpyhcfdik7c5knw4s9gl8y5h4219c4fhs4axs04np004v"; depends=[]; }; - circlize = derive2 { name="circlize"; version="0.4.8"; sha256="0jvr9hmxyhg0zx101iiqkrg8wfaj86kp62xpv42n2j9fkn5r1mi2"; depends=[colorspace GlobalOptions shape]; }; + circlize = derive2 { name="circlize"; version="0.4.10"; sha256="1xb1jq3mg4kw1513zv1i09vhn7rj7f8vp0bnms2qml74s47wxsgk"; depends=[colorspace GlobalOptions shape]; }; circular = derive2 { name="circular"; version="0.4-93"; sha256="0hki85rs8wc5950pjaw28q54rly2napfbcrx3pchlfap6wwy5kkn"; depends=[boot mvtnorm]; }; - circumplex = derive2 { name="circumplex"; version="0.3.5"; sha256="1qbh1piwbbwri3m3b00n4rlicmihfivsqq7gh02vqw01fckg60sl"; depends=[assertthat boot dplyr ggforce ggplot2 glue htmlTable magrittr purrr Rcpp RcppArmadillo rlang tibble tidyr]; }; + circumplex = derive2 { name="circumplex"; version="0.3.6"; sha256="1b5brqhya8jzxhr4zjmr6660w9mzfyncpdknzpvkdhc149s1ksjd"; depends=[assertthat boot dplyr ggforce ggplot2 glue htmlTable magrittr purrr Rcpp RcppArmadillo rlang tibble tidyr]; }; cit = derive2 { name="cit"; version="2.2"; sha256="1lf8r3r4zwvs08vl4byhw6rvf54nb7vg83558pi0b5866m7in4sc"; depends=[]; }; + citation = derive2 { name="citation"; version="0.4.1"; sha256="050dx029kz37rjmgcbik7rpa34bhhr81lrrsi17v50cy3nkr83x2"; depends=[desc jsonlite yaml]; }; citbcmst = derive2 { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; }; citccmst = derive2 { name="citccmst"; version="1.0.2"; sha256="1b7awn1hjckxisfdi4ck697hwd4a5sqklwi7xzh6kgqhk9pv7vjn"; depends=[]; }; citecorp = derive2 { name="citecorp"; version="0.3.0"; sha256="0lqxa6qfysrk3rpg9fnsxhrfsd0qsbfxhc3b43090fhlxq9gk3wm"; depends=[crul data_table fauxpas jsonlite]; }; citr = derive2 { name="citr"; version="0.3.2"; sha256="1qbarvafjb8jgkrnrhh6jw7mcglmjwf7dpdiibxf39jkmlhf7las"; depends=[assertthat curl httr miniUI RefManageR rstudioapi shiny shinyjs yaml]; }; ciuupi = derive2 { name="ciuupi"; version="1.1.0"; sha256="0czfmmf62p1vml24s87pdwv52spqycchpkqzwk8vyd4n1z27r5s2"; depends=[functional nloptr pracma statmod]; }; - civis = derive2 { name="civis"; version="2.1.2"; sha256="085cy1icqn78vimkjv2zdd5m1qf47qj9hl8vkpd29a948nkiv9xf"; depends=[future httr jsonlite memoise]; }; + civis = derive2 { name="civis"; version="3.0.0"; sha256="12q96bj21832zqqbisfxmnpqw7w72v350lyf7cpjgr7cq7b51brd"; depends=[future httr jsonlite memoise]; }; cjoint = derive2 { name="cjoint"; version="2.1.0"; sha256="1bs380ji9vsc1d77wqhl0ij9xblww3g9x3hiwpcpz26wihqcx7ac"; depends=[DT ggplot2 lmtest Matrix sandwich shiny shinyBS shinyjs survey]; }; - ckanr = derive2 { name="ckanr"; version="0.4.0"; sha256="17mb8ank4p39mkmkrpj40hk2g1wpn06k0rx65hqd5h49pvlj21d3"; depends=[DBI dbplyr dplyr httr jsonlite magrittr]; }; - clValid = derive2 { name="clValid"; version="0.6-6"; sha256="1l9q7684vv75jnbymaa10md13qri2wjjg7chr1z1m0rai8iq3xxw"; depends=[class cluster]; }; + ckanr = derive2 { name="ckanr"; version="0.5.0"; sha256="15ww7svf40j7pd76s93kw8snql0hycliyga4p22bqvm95xy9pmq0"; depends=[crul DBI dbplyr dplyr jsonlite magrittr]; }; + clValid = derive2 { name="clValid"; version="0.6-9"; sha256="0j5vgh1ccfxf2yax08p9zswan2rxnfs85ny88xlqbndkm3gmy80b"; depends=[class cluster]; }; cladoRcpp = derive2 { name="cladoRcpp"; version="0.15.1"; sha256="0msay6yvm6wc964gwrz31ky5w4mizakji3j6rpkydz0zlrl52v1j"; depends=[Rcpp RcppArmadillo]; }; - clam = derive2 { name="clam"; version="2.3.4"; sha256="1d86m3mf18h0rx03bxc8rx9zsjd77b60ik85mblxg4d4apvzh096"; depends=[]; }; + clam = derive2 { name="clam"; version="2.3.5"; sha256="19kaf1s1m8cz3cj5faprmi11lhmbgdmkspjf8l0xgrx4vas49xw8"; depends=[]; }; clampSeg = derive2 { name="clampSeg"; version="1.0-5"; sha256="05922fddvi7s4imdnr9fb27aqskgd489amw9h86g5vw4l494lnl9"; depends=[Rcpp stepR]; }; clarifai = derive2 { name="clarifai"; version="0.4.2"; sha256="0igi4xl27nz0r85hpws2zfc2gn5z2nmywp3saxgp74mh2y99lg6s"; depends=[curl jsonlite]; }; clarkeTest = derive2 { name="clarkeTest"; version="0.1.0"; sha256="0vbb3j9rnh42qyp78a4jykp7p560d0ryfp28xgvxax8h8hr80457"; depends=[]; }; - class = derive2 { name="class"; version="7.3-16"; sha256="1jpdgj0lsi60q0mqbhfw809w8d66whix27y6wpdzll6775g3j3ll"; depends=[MASS]; }; + class = derive2 { name="class"; version="7.3-17"; sha256="04qk8qia0qr8893fizmkbd5hsqn6m8383c0cyn9xnmkmvyv8a7xy"; depends=[MASS]; }; classGraph = derive2 { name="classGraph"; version="0.7-5"; sha256="19jb9jr1gfg4karymrbilh0zjrlsczhy2q03x5b0jxnh4ykhxfj8"; depends=[graph Rgraphviz]; }; classInt = derive2 { name="classInt"; version="0.4-3"; sha256="1b1lqhpzxm6b8pza8l3s0cxy74mm9y45lcd3354i2v3bg8m7mply"; depends=[class e1071 KernSmooth]; }; classifierplots = derive2 { name="classifierplots"; version="1.3.3"; sha256="01rvn0jwliyxj7q4cmyv8an5g7fzn6y3sccp8mj6bcqjyblfcfaa"; depends=[caret data_table ggplot2 gridExtra png Rcpp ROCR]; }; @@ -6104,11 +6282,12 @@ in with self; { classyfireR = derive2 { name="classyfireR"; version="0.3.3"; sha256="17h9xx5ap77ry50rbpl9gi1hbp1vahdwl99kkqsra79b8aixs2kj"; depends=[cli clisymbols crayon dplyr httr jsonlite magrittr purrr stringr tibble]; }; cld2 = derive2 { name="cld2"; version="1.2"; sha256="03ffg1nxdlmg66sgg0w2jdx2s5jzdp8qhja24z0il2qy3qsa915k"; depends=[Rcpp]; }; cld3 = derive2 { name="cld3"; version="1.3"; sha256="1xaac0phck00i2pm81m2xphy7r3lvbvj9z14y6asfz0cfjm7acx3"; depends=[Rcpp]; }; - clean = derive2 { name="clean"; version="1.1.0"; sha256="11jfg9xh6xyhcva4pq5bl7bg2d2ar12mp568j8j79dqlci3f53zx"; depends=[crayon knitr pillar rlang]; }; + clda = derive2 { name="clda"; version="0.1"; sha256="03zfanvpz1h42h2z38a63fck1p5hqig4w2svknzpw7mryji5q9b1"; depends=[MASS]; }; + clean = derive2 { name="clean"; version="2.0.0"; sha256="0zvk3a5yz54g2mn7y1d91z6ljglbyq1hkh4iip1dfyi15chrqv7y"; depends=[cleaner]; }; cleanNLP = derive2 { name="cleanNLP"; version="3.0.2"; sha256="0fwi717mmw6nb81x4wlq6pfcgv0jizrw2fkiaxz0wnhvkh3i82y6"; depends=[Matrix reticulate stringi udpipe]; }; cleancall = derive2 { name="cleancall"; version="0.1.1"; sha256="1gq7bjywgslybfk97k3fxglp6j78a0cklaammccvffs3b94i4zh4"; depends=[]; }; cleandata = derive2 { name="cleandata"; version="0.3.0"; sha256="1lm7k25j16p888xvd7rzzd3sb3namzjlpjn22xmmpzlzyl0h7dhk"; depends=[]; }; - cleaner = derive2 { name="cleaner"; version="1.4.0"; sha256="0y35cshg2a31s4ykbmzchgca7bckzr53xzzbm6941liwrfysn278"; depends=[crayon knitr pillar rlang vctrs]; }; + cleaner = derive2 { name="cleaner"; version="1.5.0"; sha256="0ci21fjcl3slyxf66w7w76vg3dvk6928qhpbgsj7qah2z5c184g6"; depends=[crayon knitr pillar rlang vctrs]; }; cleanerR = derive2 { name="cleanerR"; version="0.1.1"; sha256="0rghn8rx7dj5clmc1dqvqwfm9kiva04k9gxsjjga3109l4jcpg63"; depends=[data_table plyr]; }; cleangeo = derive2 { name="cleangeo"; version="0.2-3"; sha256="02py25pir16yklffpdicljxhwdf7bqchqllgdk069f5gikfc8yrr"; depends=[maptools rgeos sp]; }; cleanr = derive2 { name="cleanr"; version="1.3.0"; sha256="15icq6p2sxaz5jsdwqlqg7mgal4310vk96w53wzv3dzpzxndz7s4"; depends=[checkmate pkgload rprojroot]; }; @@ -6122,18 +6301,21 @@ in with self; { clifford = derive2 { name="clifford"; version="1.0-2"; sha256="17br7p4zj1cjf1nbwbk0a2jjxj589qgvlnzi6yp4dqlf2g0w01z6"; depends=[BH Rcpp]; }; clifro = derive2 { name="clifro"; version="3.2-2"; sha256="11bfvaf1b1wv83dw8ggj7ldsc6fs8s3gl7jdzyq7l1w7innihp9s"; depends=[ggplot2 lubridate magrittr RColorBrewer RCurl reshape2 scales xml2]; }; clikcorr = derive2 { name="clikcorr"; version="1.0"; sha256="0zdnbcl5q293mmm6pbn4ri7p1q6z6sff74axsb3nyd153v2xamr5"; depends=[mvtnorm]; }; - climate = derive2 { name="climate"; version="0.9.4"; sha256="1xbywpk6xls93ipvmpislyrpmzbybg09040gvqg7w5pklnb4bvnf"; depends=[RCurl XML]; }; + climaemet = derive2 { name="climaemet"; version="0.2.0"; sha256="0jhyf0wrq5scs8jcn2bpl8fhlimhdkd39pxzdc26zwwya5683cas"; depends=[climatol dplyr gganimate ggplot2 ggpubr ggthemes gtable httr jpeg jsonlite lubridate magrittr RColorBrewer rlang scales stringr tibble tidyr]; }; + climate = derive2 { name="climate"; version="0.9.8"; sha256="0fyj0zmyavsip921axwcqm54jd9dqyzir0761vczn51pw7kqk6y0"; depends=[curl httr XML]; }; climateStability = derive2 { name="climateStability"; version="0.1.3"; sha256="1zag722sznr22xid2v1k4a9sh3sr3grfa3wwd2m943zpvyi1sk9a"; depends=[raster]; }; climatol = derive2 { name="climatol"; version="3.1.2"; sha256="0p3nk4n7izj0cmmqd9apa1gix5lfdzp08ydy0n7rkl5kbkmrkb6n"; depends=[mapdata maps]; }; - climatrends = derive2 { name="climatrends"; version="0.1.0"; sha256="1jn7xib07n6f9vq614cxahxph4mrs8xbv484npl0702klpk6fjqg"; depends=[nasapower tibble]; }; + climatrends = derive2 { name="climatrends"; version="0.1.7"; sha256="0dj095jafl571hvf2bp21mdbp2pln0li9bgpymzjbpnbkvn8309j"; depends=[]; }; climdex_pcic = derive2 { name="climdex.pcic"; version="1.1-11"; sha256="01ax0kas43g3h21ixzc80f9gl4m9846gmk8v48rr0gkhcmbcc6jx"; depends=[PCICt Rcpp]; }; clime = derive2 { name="clime"; version="0.4.1"; sha256="0qs9i7cprxddg1cmxhnmcfhl7v7g1r519ff2zfipxbs59m5xk9sf"; depends=[lpSolve]; }; climextRemes = derive2 { name="climextRemes"; version="0.2.1"; sha256="1ii79zfdz90agirh3kbq80qk8nib9ks8f42f6y664j4pwk9550w3"; depends=[boot extRemes]; }; - clinDR = derive2 { name="clinDR"; version="2.2.1"; sha256="02l0k2kl3g9nq072ljiw8dfrrxpsrk7kb5drxb830jy8jdvys3hv"; depends=[doParallel DoseFinding foreach ggplot2 rstan]; }; + climwin = derive2 { name="climwin"; version="1.2.3"; sha256="1r2x5941k8l9z3517389y120sfhrskdpchc0pkibznza8aa95r85"; depends=[evd ggplot2 gridExtra lme4 lubridate Matrix MuMIn nlme numDeriv RcppRoll reshape]; }; + clinDR = derive2 { name="clinDR"; version="2.3"; sha256="1bmbbcf5ikima868l2cn9r8xja3zw4zw799i7nb8jb0hhv6fxh80"; depends=[doParallel DoseFinding foreach ggplot2 rstan]; }; clinPK = derive2 { name="clinPK"; version="0.9.0"; sha256="1n1m8szd8mxdshwz8l3hfdxi7zrmsah46kxkv7jiffwnfhijfhsm"; depends=[curl testit]; }; clinUtiDNA = derive2 { name="clinUtiDNA"; version="1.0"; sha256="0x3hb09073gkh60fc8ia0sfk948sm6z6j8sqkz275k4m8ryrabas"; depends=[]; }; clinfun = derive2 { name="clinfun"; version="1.0.15"; sha256="0cv1kdxj911scri82ms21lk9frsdp4251fawdsbqinby7k6hhmkc"; depends=[mvtnorm]; }; clinsig = derive2 { name="clinsig"; version="1.2"; sha256="1wgfl9kks57yizrf8z6x7dhmbl3a80q8nnj3a5n2hpc9yr8l9ijf"; depends=[]; }; + clipp = derive2 { name="clipp"; version="0.1.0"; sha256="0phh2nbpfb5p80ijll4h9j2hy4syl8802a2lhlm5grirws1iif84"; depends=[]; }; clipr = derive2 { name="clipr"; version="0.7.0"; sha256="1qn2p13d0c1bpqss6mv9hk60980rzhznfqpyaf5x0fy65svy9903"; depends=[]; }; clisymbols = derive2 { name="clisymbols"; version="1.2.0"; sha256="1q7gi2zmykhzas9v8fdnbpdq7pzdcpbhim1yxvd2062l777g4j86"; depends=[]; }; clogitL1 = derive2 { name="clogitL1"; version="1.5"; sha256="0y6a6s5l98i0vrj66biwr17g6pzpmm5kfz4c57af0yhv7c4s4was"; depends=[Rcpp]; }; @@ -6142,17 +6324,15 @@ in with self; { clordr = derive2 { name="clordr"; version="1.5.0"; sha256="0yzkkzp60gnap96hlfpjncxfkfvvma15yxpwf5pv5fgffacb8281"; depends=[doParallel foreach MASS pbivnorm rootSolve tmvmixnorm ttutils]; }; cloudUtil = derive2 { name="cloudUtil"; version="0.1.12"; sha256="18g946j00anlk20d0fh01w0xyj1kwyy7jhlgz5a85wmp6s2gkz74"; depends=[]; }; cloudml = derive2 { name="cloudml"; version="0.6.1"; sha256="1j15q9yb2rc4fbjxfh21fiq6is8dnb8nfyi7g8iazgfwb3p9ahpx"; depends=[config jsonlite packrat processx rprojroot rstudioapi tfruns withr yaml]; }; - clpAPI = derive2 { name="clpAPI"; version="1.2.13"; sha256="1v1ff7plr9x212cfsva9xp80q7x3vgkgmwj8qj0cch36p5p4973h"; depends=[]; }; + clpAPI = derive2 { name="clpAPI"; version="1.3.0"; sha256="1ivrvipnvnqf1mnvvqnv2jgf69i0h84f46n8x41bx89lag0161bv"; depends=[]; }; clr = derive2 { name="clr"; version="0.1.2"; sha256="088ks9lrhlyvg3yvlfmb0091yp6qp5bzg9h5r6ryv3bk6y56sajx"; depends=[dplyr lubridate magrittr]; }; clttools = derive2 { name="clttools"; version="1.3"; sha256="0va9k1b4xsb2sgpxzvid6sa8m6b8i3r4kgghclmb78nnrs480cwi"; depends=[]; }; - clubSandwich = derive2 { name="clubSandwich"; version="0.4.2"; sha256="0zmy42n0j0li3kzkbpwxhv6walvd5cffx1ra3p4ksxxk8fjdlf61"; depends=[sandwich]; }; clue = derive2 { name="clue"; version="0.3-57"; sha256="05rdcahawxlxci3fjxihjvvh33wqpxw50sx015165ab4nh3rsdkf"; depends=[cluster]; }; - clues = derive2 { name="clues"; version="0.6.2.2"; sha256="1pvalkpvxjj6qrvffbx0sqvfmcxf6dkzrpklshkx1b2k5s4z8791"; depends=[]; }; cluscov = derive2 { name="cluscov"; version="1.1.0"; sha256="0345v5r6b53243h5bir29v0w77pmwjqjkqfrjnk5j5r1wbh98q1w"; depends=[MASS quantreg]; }; clusrank = derive2 { name="clusrank"; version="0.6-2"; sha256="1hjxks8cb1mp1d93rcpwqjrxqavspmzjrxvflhv6nqx41ar9dpxv"; depends=[MASS Rcpp]; }; clust_bin_pair = derive2 { name="clust.bin.pair"; version="0.1.2"; sha256="11lqd3vmx4kg08n6iv9na8rra49dkldx4f8jyf43hppbjrbvfinm"; depends=[]; }; clustDRM = derive2 { name="clustDRM"; version="0.1-0"; sha256="1c5z08a15scp3nrwyh0c03pdaawvm3ivbygqpbglwxim7zf73rd2"; depends=[caret doParallel DoseFinding DT foreach IsoGene MCPMod multcomp ORCME ORIClust pheatmap RColorBrewer readr shiny]; }; - clustEff = derive2 { name="clustEff"; version="0.1.2"; sha256="1hy7jc8yfg554l439lfrppdsizrdmvxrqf9dwbkjckbvggg54f0k"; depends=[cluster fda qrcm]; }; + clustEff = derive2 { name="clustEff"; version="0.2.0"; sha256="0kh3jzzqnchkgp0w1pz2sjxr215lyjh62v5857g94h91h5kn70y6"; depends=[cluster fda ggplot2 ggpubr qrcm]; }; clustMD = derive2 { name="clustMD"; version="1.2.1"; sha256="0w4s9dab2mm5x0xibyl6s101c64if945a2cmwin9psd95p76mcny"; depends=[ggplot2 MASS mclust msm mvtnorm reshape2 truncnorm viridis]; }; clustMixType = derive2 { name="clustMixType"; version="0.2-5"; sha256="0i3n8w2lsaiak7nz5ypnwnjkr5qq0slklcdpykmaikfmzahihvla"; depends=[RColorBrewer]; }; clustcurv = derive2 { name="clustcurv"; version="2.0.0"; sha256="1zjyf81ifd2sgkgs548iy1awjhjmb541rrrw2pb92cn8ph7z7nc1"; depends=[data_table doParallel doRNG foreach ggfortify ggplot2 Gmedian KernSmooth npregfast RColorBrewer survival tidyr wesanderson]; }; @@ -6164,20 +6344,19 @@ in with self; { clusterPower = derive2 { name="clusterPower"; version="0.6.111"; sha256="1mwq188x9d495my75cdcahfjm3w46cas9jqxks5c0j63395cw9g3"; depends=[lme4]; }; clusterRepro = derive2 { name="clusterRepro"; version="0.9"; sha256="0s7qqvaf5yxxwhw6qyzfmk65c49yz405gljarwav6aglkx9883cl"; depends=[]; }; clusterSEs = derive2 { name="clusterSEs"; version="2.6.2"; sha256="15a9hn8g70y64v5lq91mwjbx411ji2b5zvm1wm4qz820jri5wy20"; depends=[AER Formula lmtest mlogit plm sandwich]; }; - clusterSim = derive2 { name="clusterSim"; version="0.48-3"; sha256="1037d9nwj214vgmva6590kvyqr19brbnmb36inkgph4mg3276lsf"; depends=[ade4 cluster e1071 MASS R2HTML rgl]; }; + clusterSim = derive2 { name="clusterSim"; version="0.49-1"; sha256="0gnxmv2zr9jzjfygsi3bfm2la81pvfrhh4bra7k8839sqb263v1q"; depends=[ade4 cluster e1071 MASS R2HTML rgl]; }; clusterability = derive2 { name="clusterability"; version="0.1.1.0"; sha256="15gimcs6wrasafg1ys7id0mkg9fvacxbwpgg9d4b5avk4gff39bs"; depends=[diptest]; }; clusteredinterference = derive2 { name="clusteredinterference"; version="1.0.1"; sha256="01w7i9pmvwmrlf5q6y2d48ib0bm16j16xiw4pqnrvbndx4d6wf6n"; depends=[cubature Formula lme4 numDeriv rootSolve]; }; - clusterfly = derive2 { name="clusterfly"; version="0.4"; sha256="0mxpn7aywqadyk43rr7dlvj0zjcyf4q7qbqw5ds38si7ik34lkrg"; depends=[e1071 plyr reshape2 rggobi RGtk2]; }; clusterhap = derive2 { name="clusterhap"; version="0.1"; sha256="1ic6588mqp146jsvrxlxk449zw4n81xixgrny9r29497z7hg5a1m"; depends=[]; }; clustering_sc_dp = derive2 { name="clustering.sc.dp"; version="1.0"; sha256="0cppka7613cbjjf1q2yp6fln511wbqdhh8d4gs6p0fbq379kzmvc"; depends=[]; }; clustermole = derive2 { name="clustermole"; version="1.0.1"; sha256="15d7khwg4rjshbkkcqrmw9dk8wy683z8ix5n6xdrlvp0rq3l3n2c"; depends=[dplyr GSVA magrittr rlang tibble tidyr]; }; - clustermq = derive2 { name="clustermq"; version="0.8.9"; sha256="128b71h9vxai3j7bbbkx9pm5mabpxdad5qwgxrc8a6sws790yn4b"; depends=[narray progress purrr R6 rzmq]; }; + clustermq = derive2 { name="clustermq"; version="0.8.95.1"; sha256="1777c1xg15p6dm5grz64yd35nbhmj914dyxpymv6hl25g740c2ky"; depends=[narray progress purrr R6 Rcpp]; }; clusternomics = derive2 { name="clusternomics"; version="0.1.1"; sha256="05nkw6h2dvky07fj50myzw5xlkqyiflbn4vwqw8a1q2idv4awi7b"; depends=[magrittr MASS plyr]; }; clusternor = derive2 { name="clusternor"; version="0.0-4"; sha256="19ac45jn9lkd600nnaib2f0ricdvh0dv3l1ap6c9vn655rgl9i3s"; depends=[Rcpp]; }; clustertend = derive2 { name="clustertend"; version="1.4"; sha256="1aqg8cy1hk3lmzvyqh9qc1mcknrva2i0c77hyd0yff9whz80ik4j"; depends=[]; }; clusteval = derive2 { name="clusteval"; version="0.1"; sha256="1ld0bdl4fy8dsfzm3k7a37cyxc6pfc9qs31x4pxd3z5rslghz7rj"; depends=[mvtnorm Rcpp]; }; clustrd = derive2 { name="clustrd"; version="1.3.7-2"; sha256="0j0nmqc9q9djg824g89z27xizdy1jdsygz1gc0r0mrzdd3dyk2ya"; depends=[ca cluster corpcor dplyr fpc GGally ggplot2 ggrepel plyr rARPACK tibble]; }; - clustree = derive2 { name="clustree"; version="0.4.2"; sha256="0bpqvy49vyvfmmrbbkf1kv87x125kr10fhdyg9d27pdwrgiqwssx"; depends=[checkmate dplyr ggplot2 ggraph ggrepel igraph rlang tidygraph viridis]; }; + clustree = derive2 { name="clustree"; version="0.4.3"; sha256="0lxydy2f83qqd5dhlp2l546jax759l43b29j6g82079yzg1szwsz"; depends=[checkmate dplyr ggplot2 ggraph ggrepel igraph rlang tidygraph viridis]; }; clustringr = derive2 { name="clustringr"; version="1.0"; sha256="07f0ywpkf8igic7ijvvrjlngq3smjcv9nqnah41fp6wfgvh49ifq"; depends=[assertthat dplyr forcats ggplot2 ggraph igraph magrittr rlang stringdist stringi stringr tidygraph]; }; clustsig = derive2 { name="clustsig"; version="1.1"; sha256="0n5nf712vsa8zb0c2lv4gjqsgva62678vjngr9idgswb73shxm8v"; depends=[]; }; clustvarsel = derive2 { name="clustvarsel"; version="2.3.3"; sha256="1dw9iniy2vw4yz1jip4jja6fsp03kbr86mm5knbhhyc0l24i0wrz"; depends=[BMA foreach iterators Matrix mclust]; }; @@ -6188,42 +6367,45 @@ in with self; { cmenet = derive2 { name="cmenet"; version="0.1.1"; sha256="0f7bci6nn63q243i7wvhr9mqlf64gw8w042nc1lqb986p7zfxihk"; depends=[glmnet hierNet MASS Rcpp RcppArmadillo sparsenet]; }; cmm = derive2 { name="cmm"; version="0.12"; sha256="0q6hs56hhi9vaanx7i7gg7ncv0h29lndla66g9chzmh3lchq3r20"; depends=[]; }; cmmr = derive2 { name="cmmr"; version="0.1.2"; sha256="0nik1pzd1rckalvn7xh6s699kkdjnra3q3bn5x16c1lmpz5bp2s4"; depends=[httr progress RJSONIO]; }; - cmna = derive2 { name="cmna"; version="1.0.2"; sha256="18vbqa258m0g5pvfhqi2vbr8n2bil07n9spgz1wh2axw1c3bcf76"; depends=[]; }; + cmna = derive2 { name="cmna"; version="1.0.3"; sha256="07wjjbhpd8g2gsmxh9cq2ij81qvd6y7x8zabspk9jilmxhycpxy6"; depends=[]; }; cmocean = derive2 { name="cmocean"; version="0.2"; sha256="0v1bm2qgvjb82ynakglr61swx5jy41ngn6vml5gllv3r7skqr1is"; depends=[]; }; - cmprsk = derive2 { name="cmprsk"; version="2.2-9"; sha256="0xhgfg5b4i9skkaxp7gzkafgg5bqs5q1rp4hpw2jjmykg2nifn99"; depends=[survival]; }; + cmprsk = derive2 { name="cmprsk"; version="2.2-10"; sha256="1xnx2zanw548prxsw2zw5cddkkg6kj97jgyzw67achq5mnsvfbg8"; depends=[survival]; }; cmprskQR = derive2 { name="cmprskQR"; version="0.9.2"; sha256="1b3di5fsgglriv00fxydpc4p8lh0xcgi6jc04awq2vmp6s8kvjmw"; depends=[quantreg survival]; }; cmrutils = derive2 { name="cmrutils"; version="1.3.1"; sha256="0nrq84bkd23lvvg8ls2smkjcnfnydhbcni3n6s8w0579i9xga8dv"; depends=[chron]; }; cmsaf = derive2 { name="cmsaf"; version="2.0.1"; sha256="0ampq493i8x40jk8p8acgizy1vlhm05i5nllk5a0xk81vywf7ifi"; depends=[fields FNN ncdf4 rainfarmr raster sp]; }; + cmstatr = derive2 { name="cmstatr"; version="0.7.0"; sha256="0mah4kd677gj3yifphkd9v5nnfahwn7m4lsqcrhdqi49bgsd61mm"; depends=[generics ggplot2 kSamples MASS rlang tibble]; }; cmvnorm = derive2 { name="cmvnorm"; version="1.0-6"; sha256="1wf23w9gxrrgw7j740r381xrss09inzd7mrg6g7wz883c9madbfn"; depends=[elliptic emulator]; }; - cna = derive2 { name="cna"; version="2.2.2"; sha256="1125fnw0a4phwpf6c64p7s2jf0g3p4hqwmgbp44dn5n71mhjd61z"; depends=[matrixStats Rcpp]; }; + cna = derive2 { name="cna"; version="2.2.3"; sha256="0ffz95yqj435bwzjih9xh1qbcz5zivz1g7fqf1k097z87d2j7qp3"; depends=[matrixStats Rcpp]; }; cnaOpt = derive2 { name="cnaOpt"; version="0.1.1"; sha256="179ixxl7lp446ps6nlslnnywxh2yba9ypx2zrya505k1ybryxhc2"; depends=[cna dplyr ggplot2 matrixStats Rcpp]; }; cnbdistr = derive2 { name="cnbdistr"; version="1.0.1"; sha256="05qi41jimslbngjgbwzfda0q25hb28ax79v9yckvrbpgjc8dk990"; depends=[hypergeo]; }; cncaGUI = derive2 { name="cncaGUI"; version="1.0"; sha256="1v55kvrc05bsm1qdyfw3r3h64wlv3s6clxbr8k512lfk99ry42kn"; depends=[MASS plotrix rgl shapes tcltk2 tkrplot]; }; - cnmlcd = derive2 { name="cnmlcd"; version="1.2-0"; sha256="1vpn926wf8vkifscnb35y4c74721iar2wykrl50fcv0fg16yggnd"; depends=[lsei]; }; - cnum = derive2 { name="cnum"; version="0.1.1"; sha256="03dl8s10jrkj70p4rdxj1d06n2silhfhc0w3jphzll7zx1p8w0pa"; depends=[stringr]; }; + cnum = derive2 { name="cnum"; version="0.1.2"; sha256="0xf8fna91pb7xqgz43a9h32x4gkyak5bqvc01wz2sm02f2rj06cx"; depends=[BH Rcpp stringr]; }; coRanking = derive2 { name="coRanking"; version="0.2.1"; sha256="10489vbd917mzz5lw7ygi6q8q5qa7sp5d8xgv1ykn4lfx0avch69"; depends=[]; }; coala = derive2 { name="coala"; version="0.6.0"; sha256="0h7kc12yc90y5i733l6sfd9h12h0a2c7wv9wscjslj18sl3w3ccv"; depends=[assertthat digest R6 Rcpp RcppArmadillo rehh scrm]; }; coalescentMCMC = derive2 { name="coalescentMCMC"; version="0.4-1"; sha256="0xxv1sw5byf84wdypg5sfazrmj75h4xpv7wh4x5cr9k0vgf80b3s"; depends=[ape coda lattice Matrix phangorn]; }; coalitions = derive2 { name="coalitions"; version="0.6.12"; sha256="11844sz65axj23xwv505jxck37xv3a5n36jpdr9ywvmb19gshar7"; depends=[checkmate dplyr ggplot2 gtools jsonlite lubridate magrittr purrr RCurl rlang rvest stringr tidyr xml2]; }; coarseDataTools = derive2 { name="coarseDataTools"; version="0.6-5"; sha256="1k42vl49kfbllc5d66yn7y9f4jgbkfibmd85nl7hwm0gkgkssg36"; depends=[MCMCpack]; }; - cobalt = derive2 { name="cobalt"; version="4.1.0"; sha256="1qpvkxbiw6i3q2kp9hvhxjkz9hyffbdgqzaqf71233nrbimqbg2w"; depends=[backports crayon ggplot2 gridExtra gtable]; }; + cobalt = derive2 { name="cobalt"; version="4.2.2"; sha256="13ks10lg5c1hvbh8dmzp3mqz7frqk6bq3cxkm3wf31hb6086fbqa"; depends=[backports crayon ggplot2 gridExtra gtable rlang]; }; cobiclust = derive2 { name="cobiclust"; version="0.1.0"; sha256="068cqrhx7lxsvcjb62rgrca7y20cybz4445bl1qc6k16ca4bh0m9"; depends=[cluster]; }; cobs = derive2 { name="cobs"; version="1.3-4"; sha256="0hiw5smk6kgk0gb9840kcqkhkybl7n30s77xhjc395x09izbgix1"; depends=[quantreg SparseM]; }; - coca = derive2 { name="coca"; version="1.0.4"; sha256="1mk6vhy3s243rn4bwfr72900x0fcfs729k179kc81zvjj3v7m0h9"; depends=[caret cluster fpc glmnet Matrix nnet pheatmap RColorBrewer]; }; + coca = derive2 { name="coca"; version="1.1.0"; sha256="1lh7q3ip1jaz5zj5zcnd5whwpjw6zcrxs6j0j8mnmjsnw2kr4m5n"; depends=[caret cluster fpc glmnet Matrix nnet pheatmap RColorBrewer sparcl]; }; cocktailApp = derive2 { name="cocktailApp"; version="0.2.1"; sha256="1aq7m3qb4s5v59ym8p5vh7lr5s1xfp8b04x64a014k47gakgiw1d"; depends=[dplyr DT forcats ggplot2 ggtern magrittr shiny shinythemes tibble tidyr]; }; cocor = derive2 { name="cocor"; version="1.1-3"; sha256="106zyrrypil8jyg0pva5zj4hgb53z81nca3d0mh2q3j55zq3wl12"; depends=[]; }; cocoreg = derive2 { name="cocoreg"; version="0.1.1"; sha256="0jrrkak964pl1vih592jgqgl6bw08j0fa1rh3j85x64bqq4m7278"; depends=[abind CCAGFA combinat e1071 ggplot2 glmnet gridExtra MASS multiway pls reshape RGCCA]; }; cocorresp = derive2 { name="cocorresp"; version="0.4-1"; sha256="10prxmc80yk0l5v1gcy92clmjvjywimypqpzjb6gh5pipsqr4swr"; depends=[vegan]; }; cocron = derive2 { name="cocron"; version="1.0-1"; sha256="0dl14y9v9kndy5gzhhbhq3f31ja724y1hra40givy6bij7h2cj30"; depends=[]; }; coda = derive2 { name="coda"; version="0.19-3"; sha256="1mn50bshky968gn4nf6vnkaa768fnvm1xmhkms7szwdw9341zpyk"; depends=[lattice]; }; - coda_base = derive2 { name="coda.base"; version="0.2.2"; sha256="166j7bf7gm28176ajm9gyl56ncwhlxrjizbp3ah6ssp7a72x2xyi"; depends=[Rcpp RcppArmadillo]; }; + coda_base = derive2 { name="coda.base"; version="0.3.1"; sha256="0rz0hlhww9ja1y40yi4fah468apwp1xcnbbl1qmfggil863l5fqa"; depends=[Rcpp RcppArmadillo]; }; codadiags = derive2 { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; }; - codebook = derive2 { name="codebook"; version="0.8.2"; sha256="1glzrvffhrgya6617m8zgbf2r8v1y1wpml11ayanz4s4k2xzzlmc"; depends=[dplyr DT forcats future ggplot2 glue haven htmltools jsonlite knitr labeling labelled likert lubridate miniUI pander psych purrr rio rlang rmarkdown rstudioapi shiny skimr stringr tibble tidyr tidyselect userfriendlyscience]; }; - codemetar = derive2 { name="codemetar"; version="0.1.8"; sha256="1zqpxh0hx7jh1xki1sx9bs5a30hv4gfaqqlnd630a5n68hghjmg2"; depends=[commonmark crul curl desc gh git2r glue jsonlite magrittr memoise pingr pkgbuild purrr readr sessioninfo stringi stringr tibble usethis whisker xml2]; }; + codalm = derive2 { name="codalm"; version="0.1.0"; sha256="0gfvq6pyqm1slj2bcla65dliffk0fc99hc7ga5142bqxmmr9bx35"; depends=[future future_apply SQUAREM]; }; + codebook = derive2 { name="codebook"; version="0.9.2"; sha256="0hxyzwpjbvfzad8h2428q94m961mmwvv28nagw2d36qxd10awh16"; depends=[dplyr forcats ggplot2 glue haven htmltools jsonlite knitr labeling labelled likert purrr rlang rmdpartials skimr stringr tibble tidyr tidyselect vctrs]; }; + codemetar = derive2 { name="codemetar"; version="0.1.9"; sha256="096habmcncyfadly4zflydjayifklifjr4iqfpfg4hl43yq9a5q2"; depends=[cli commonmark crul desc gert gh jsonlite magrittr memoise pingr pkgbuild purrr remotes sessioninfo urltools xml2]; }; codep = derive2 { name="codep"; version="0.9-1"; sha256="17jziwm56icswa4ngp51ah8w1ma7ij3cksbdaipk0ikqvb5kinkb"; depends=[]; }; codetools = derive2 { name="codetools"; version="0.2-16"; sha256="00bmhzqprqfn3w6ghx7sakai6s7il8gbksfiawj8in5mbhbncypn"; depends=[]; }; + codexcopd = derive2 { name="codexcopd"; version="0.1.0"; sha256="0pkl29fybflnj42xj8agyw6s3xif9vr5690vlkv5n3dxs8ji582h"; depends=[]; }; codified = derive2 { name="codified"; version="0.2.0"; sha256="1hmw7yrw4qx8v9rkqqvqf4013s9whq5qlgwz7v882j4slpvm6gb1"; depends=[checkmate dplyr kableExtra knitr magrittr readr rlang tibble tidyr]; }; codingMatrices = derive2 { name="codingMatrices"; version="0.3.2"; sha256="0kldx2h3mksw4644d0ask6ij7i63rrwk0njlsvkbdjz3bf7pdv1b"; depends=[fractional Matrix]; }; + codyn = derive2 { name="codyn"; version="2.0.4"; sha256="0riq4v9pc8fbclzz2zx06264sa4k0lpfzv8cp2ng75a4qp63chwv"; depends=[assertthat permute vegan]; }; coefficientalpha = derive2 { name="coefficientalpha"; version="0.7"; sha256="0li1js501sa8m0ba76ymn4lz5y4np7kf96gnxz9kypg50kd58yis"; depends=[lavaan rsem]; }; coefplot = derive2 { name="coefplot"; version="1.2.6"; sha256="036njf2xwmjvyamanb7nfn2n09ps2rdgk3zrxn6khwp8ly245nps"; depends=[dplyr dygraphs ggplot2 magrittr plyr purrr reshape2 tibble useful]; }; coenocliner = derive2 { name="coenocliner"; version="0.2-2"; sha256="0r4h0r3av2d1cxmjpwaabjn807626pzqnra2x542wdnnf7h8nmdf"; depends=[]; }; @@ -6244,27 +6426,28 @@ in with self; { cold = derive2 { name="cold"; version="2.0-1"; sha256="143zmccaiijz4cfiwh1a48h95bqa0ypa9ivv43qkx9y55911a05x"; depends=[cubature MASS]; }; colf = derive2 { name="colf"; version="0.1.3"; sha256="1av82yrp6csw7700ymipd02j73cmzn0apv7ykachjw09nzk86kvj"; depends=[nlsr]; }; collUtils = derive2 { name="collUtils"; version="1.0.5"; sha256="0gbk3lrb2lwq2ixrpcngng6qz6axjb4iyqy5606x1zmjm71c060p"; depends=[Rcpp rJava]; }; - collapse = derive2 { name="collapse"; version="1.1.0"; sha256="0pypbs6g6gvsyagdxfk6x0qsh9byrwyqv9v0ajp20cqbx0s22kxi"; depends=[lfe Rcpp]; }; + collapse = derive2 { name="collapse"; version="1.3.0"; sha256="0vpqiqqqcyr017cvapwyhmzv2yd65yn6l77q2i0d7bf06rgmw1yn"; depends=[lfe Rcpp]; }; collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.7"; sha256="0b65pbp1wnpsrayqi630ds4r98jvcvynnlp6wxdqrnnr9nzw5343"; depends=[data_tree htmlwidgets]; }; - collateral = derive2 { name="collateral"; version="0.4.2"; sha256="1i1fzvm838s2cfmxw654vwmp9rl9f9985vjildkxyx2f6571sjfm"; depends=[crayon pillar purrr]; }; collectArgs = derive2 { name="collectArgs"; version="0.4.0"; sha256="0fz5w1xsxiddzrwahrg50px4igyhd4plq655jaix6grancs7kvix"; depends=[magrittr]; }; - collections = derive2 { name="collections"; version="0.3.0"; sha256="01mgkfl849gy0xzs3ccbkg4pmpzs6f1n953izrcf5797qg8xqkr5"; depends=[]; }; + collections = derive2 { name="collections"; version="0.3.5"; sha256="053ig88pva78wxxwya3v7cz853k563dkpgxrf2xvd0l0d9fanxmz"; depends=[]; }; collector = derive2 { name="collector"; version="0.1.3"; sha256="1yn6gzccdbp7n4qnwqpv66617qldjabzrlww41v6wqn9b7qyr0ii"; depends=[dplyr EnvStats evaluator flextable ggplot2 ggpubr magrittr officer purrr quanteda readr rlang rmarkdown stringr tibble tidyr xaringan]; }; collidr = derive2 { name="collidr"; version="0.1.2"; sha256="1b8yy0p1r4gs6azcl1aqkny3hws5hhl9bvsrkrhgk2r2xni9sk6f"; depends=[dplyr jsonlite stringr]; }; collpcm = derive2 { name="collpcm"; version="1.1"; sha256="14rlipdww5sm1ijp2ggpnd23m14qh10zm99cfq1w0kky9jfl0fkn"; depends=[latentnet network vegan]; }; colmozzie = derive2 { name="colmozzie"; version="1.1.1"; sha256="0sn7dqg7rnddnmdb10c6scws6kgi1lz4lw8nc698x63z431ah1p8"; depends=[]; }; coloc = derive2 { name="coloc"; version="3.2-1"; sha256="0sm2mji8bihvcshkh9g18sgbwznhh8j4hip50rk7ckac3vc8y75h"; depends=[BMA data_table ggplot2 reshape snpStats]; }; colocalized = derive2 { name="colocalized"; version="0.2.0"; sha256="1q98wfqk0p9p92jgjf8liamz6grzwy6h57k7681fm07wfnyr268g"; depends=[doParallel foreach purrr]; }; + colocr = derive2 { name="colocr"; version="0.1.1"; sha256="0ijykza6fdmwbr5zbyfjf382anrxh0lb9hlallyawfi6z076fv7j"; depends=[imager magick magrittr scales shiny]; }; colorBlindness = derive2 { name="colorBlindness"; version="0.1.6"; sha256="18922caddz7c5dj5mbyl7qihgsnk384w31k17rwngm5hckz2d5yi"; depends=[colorspace cowplot ggplot2 gridGraphics gtable]; }; + colorDF = derive2 { name="colorDF"; version="0.1.2"; sha256="1rag13z0h7jyzdq3cm40vxjvm29jk1jim907rsphnasybrf8wa48"; depends=[crayon purrr]; }; colorRamps = derive2 { name="colorRamps"; version="2.3"; sha256="0shbjh83x1axv4drm5r3dwgbyv70idih8z4wlzjs4hiac2qfl41z"; depends=[]; }; colorSpec = derive2 { name="colorSpec"; version="1.2-1"; sha256="1y6wq4g4rf2carqi387v94502nb5jmw7f6f7grbdzbkixs77bkg2"; depends=[MASS spacesXYZ]; }; colordistance = derive2 { name="colordistance"; version="1.1.0"; sha256="0aiqvx0mlraczkcfhzfcaavmqqmxiffnghhw266f84bphxw6b5q2"; depends=[abind ape clue emdist gplots jpeg magrittr mgcv plotly png scales scatterplot3d spatstat]; }; coloredICA = derive2 { name="coloredICA"; version="1.0.0"; sha256="1xj4dsrwgqzm2644nk3y8nj47m036b4ylh6v60jccj3707spb32r"; depends=[MASS]; }; - colorednoise = derive2 { name="colorednoise"; version="1.0.5"; sha256="094iil7f8w5cinw5j1ja3a2l1w352hlj6f3vfsvs6k1ww5f1sd6l"; depends=[dplyr purrr Rcpp RcppArmadillo tibble tidyr]; }; + colorednoise = derive2 { name="colorednoise"; version="1.1.0"; sha256="0x6l9civgqr6lbvdxnhzm30ykx9i6k1q3n6skhnq9b6b52zwrcx4"; depends=[data_table purrr Rcpp RcppArmadillo]; }; colorfindr = derive2 { name="colorfindr"; version="0.1.4"; sha256="175h476dzq1f2x25vdd268xj4ja4lv8fhfj9vld85waqi0sq515g"; depends=[bmp dplyr jpeg magrittr pixmap plotly plotwidgets png purrr rsvg stringr tibble tiff treemap]; }; colorfulVennPlot = derive2 { name="colorfulVennPlot"; version="2.4"; sha256="01b3c060fbnap78h9kh21v3zav547ak2crdkvraynpd2096yk51w"; depends=[]; }; colorhcplot = derive2 { name="colorhcplot"; version="1.3.1"; sha256="009pyyb30kwshldd7v7zfy5rxys6i0dhlc5w8ail61acbg4rlrmz"; depends=[]; }; - colorist = derive2 { name="colorist"; version="0.1.0"; sha256="1j5gd1fis62xylgaf7dj5n0dnalarz7mg824iakzmqgcqzjm06l4"; depends=[colorspace ggplot2 magrittr raster scales tidyr]; }; + colorist = derive2 { name="colorist"; version="0.1.1"; sha256="1f7hdwivpg76dwns58jabdv4ybavd2pxpx43aqh7lp9whi7jqgk0"; depends=[colorspace ggplot2 magrittr raster scales tidyr]; }; colormap = derive2 { name="colormap"; version="0.1.4"; sha256="0032ji9n8pivl70jppq989fgg781wil8zag7pfl1hs9xrpin8asy"; depends=[ggplot2 stringr V8]; }; colorpatch = derive2 { name="colorpatch"; version="0.1.2"; sha256="18p9hgccp37pbdf437xffkv6z500896v08fsw2jm8zcl9ladygaf"; depends=[colorspace ggplot2 gridExtra TSP]; }; colorr = derive2 { name="colorr"; version="1.0.0"; sha256="1wwrgb9fc9gzxxwxrdrkwwrmhqqllv29wr4q8y1shj9d3nzcpwmh"; depends=[]; }; @@ -6273,7 +6456,7 @@ in with self; { colortools = derive2 { name="colortools"; version="0.1.5"; sha256="0z9sx0xzfyb5ii6bzhpii10vmmd2vy9vk4wr7cj9a3mkadlyjl63"; depends=[]; }; colourlovers = derive2 { name="colourlovers"; version="0.3.5"; sha256="172ny0w9n2ys8pa7zxkfjsl7lv6fa59bmmbkzlwfx59wamxahmky"; depends=[httr jsonlite png XML]; }; colourpicker = derive2 { name="colourpicker"; version="1.0"; sha256="0z3v2083g7kwdp21x9s2n1crfh24agpdq3yxkcdzc2awn2pwpnpi"; depends=[ggplot2 htmltools htmlwidgets jsonlite miniUI shiny shinyjs]; }; - colourvalues = derive2 { name="colourvalues"; version="0.3.4"; sha256="0b5ni3wx8hid6kf13mihphjxdrfz7srlgd9vhrlbxk9mlxzh593y"; depends=[BH Rcpp]; }; + colourvalues = derive2 { name="colourvalues"; version="0.3.5"; sha256="1mj3pc00fc7ifn6w6jhk5yda6iq5jmx92ypl2qxaad6n4s18s6nr"; depends=[BH Rcpp]; }; colourvision = derive2 { name="colourvision"; version="2.0.2"; sha256="15ndhqpp5fi9jgiri9ysl68nf4rdamh9c25svf5nvh2wvv8shrd9"; depends=[Matrix rgl]; }; colr = derive2 { name="colr"; version="0.1.900"; sha256="0ilz1y0jd2vgyh81g3dwx2l64sir6z6sgmqx7lnvr1hafsqnwfc8"; depends=[]; }; colt = derive2 { name="colt"; version="0.1.1"; sha256="028jqvgr14ig8jxp8h2lrf7mainzppgqh6v1479qfv4l9is3bnwy"; depends=[crayon]; }; @@ -6283,7 +6466,7 @@ in with self; { combiter = derive2 { name="combiter"; version="1.0.3"; sha256="11pcvrpbvkzkjwks2z6ww7s9d5fkh8zl0jw52a5ya3y1wkqcs3n6"; depends=[iterators itertools Rcpp]; }; comclim = derive2 { name="comclim"; version="0.9.5"; sha256="1s6zh16j0q2n7gkvhd4bym9w3hyg4b9n5lpgspqp2nlygdl6jxxb"; depends=[]; }; cometExactTest = derive2 { name="cometExactTest"; version="0.1.5"; sha256="0ar9axm9cd1wd937xcmsmd7xqilnfyab8gsrpkiqpc3fjh86qyrp"; depends=[dplyr]; }; - cometr = derive2 { name="cometr"; version="0.1"; sha256="00ikz2096bq8fh2sy15bgnwq0b1rbjj49yc0xs9v3xsr6ghsjkph"; depends=[callr httr jsonlite R_utils R6 yaml]; }; + cometr = derive2 { name="cometr"; version="0.2.0"; sha256="0fbg1lfw0q4lfk4svflfwjfmwxbrdvmrvxry90xp39i7g8zd2ahd"; depends=[callr httr jsonlite R_utils R6 yaml]; }; comf = derive2 { name="comf"; version="0.1.9"; sha256="0n9893nli8rf9g5c9yyqrhbk3xsbvynv1vlpn03i5xs05aj3r88h"; depends=[plyr reshape]; }; commandr = derive2 { name="commandr"; version="1.0.1"; sha256="1d6cha5wc1nx6jm8jscl7kgvn33xv0yxwjf6h3ar3dfbvi4pp5fk"; depends=[]; }; commentr = derive2 { name="commentr"; version="1.0.4"; sha256="0anlcbk8rj0yr8i23qmr6v5ws0695nkc3mvgr6pnq1fg2d4c4brj"; depends=[stringr]; }; @@ -6294,31 +6477,34 @@ in with self; { compactr = derive2 { name="compactr"; version="0.1"; sha256="0f2yds6inmx0lixj08ibqyd2i61l2cbg1ckgpb8dl2q7kcyyd6mx"; depends=[]; }; compare = derive2 { name="compare"; version="0.2-6"; sha256="0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"; depends=[]; }; compareC = derive2 { name="compareC"; version="1.3.1"; sha256="0dachfr23lps2jj1y5gc958k54vskmww84gdgk4amihsdgjsnphg"; depends=[]; }; - compareDF = derive2 { name="compareDF"; version="2.0.2"; sha256="1bsrb9v1rr4s67q01gqf9bjp7hla47kxxkc4a4kflmjjixb4fzz3"; depends=[dplyr htmlTable magrittr openxlsx stringr tidyr]; }; - compareGroups = derive2 { name="compareGroups"; version="4.4.1"; sha256="1pyqlqfb3km4ggl8z8nf5hyfa4az0nav98ik1f6zlrdydswdyl71"; depends=[chron flextable HardyWeinberg kableExtra knitr officer rmarkdown SNPassoc survival writexl]; }; + compareDF = derive2 { name="compareDF"; version="2.2.0"; sha256="039s75dzm9dwy31svvvqvbxdh58j2ph00fngshnidxis8l3fn47i"; depends=[dplyr htmlTable magrittr openxlsx stringr tibble tidyr]; }; + compareGroups = derive2 { name="compareGroups"; version="4.4.3"; sha256="1y2gpakqizv8inqaf4a8dcpy35wkhggjik804sm9k9fq1m189xwi"; depends=[chron flextable HardyWeinberg kableExtra knitr officer rmarkdown SNPassoc survival writexl]; }; compareODM = derive2 { name="compareODM"; version="1.2"; sha256="019hq8j56asjvh4x1p65785mf38xr05j3by0749gl9k9yl8645da"; depends=[XML]; }; comparer = derive2 { name="comparer"; version="0.2.1"; sha256="1ric6niwx9718qrdkiclmjbrx4vjbg7jwvd6917hihzyjgbsi9fj"; depends=[R6]; }; - comparison = derive2 { name="comparison"; version="1.0-4"; sha256="0pc462rhk8gr8zrf08ksi315kmhydlp027q5gd40ap5mmhk7rd82"; depends=[isotone]; }; + comparison = derive2 { name="comparison"; version="1.0-5"; sha256="0vg8s9j2xjzv7bidd59givxgcqzhdd29q84dj4ww2a6vkmq269r7"; depends=[isotone]; }; compas = derive2 { name="compas"; version="0.1"; sha256="1ckryllwd8avz6456970qhfa3wpcsmhkicnibnv7gl4crzf44xgx"; depends=[bio3d Rcpp RcppEigen]; }; compboost = derive2 { name="compboost"; version="0.1.0"; sha256="0q7jfj5yc2jvddyyhnzv8fnlmngjfws7cg2blxai76s2fw6bmgxp"; depends=[checkmate glue R6 Rcpp RcppArmadillo]; }; compendiumdb = derive2 { name="compendiumdb"; version="1.0.3"; sha256="0glaqlzz5wr14yfhka1y7yw5ha6yc4waw61msbz0vkwj5z2hd2hk"; depends=[Biobase GEOquery RMySQL]; }; comperank = derive2 { name="comperank"; version="0.1.1"; sha256="0wz46rkpx1cjjng3i03pms2x27cik9wbx7al5r289ym3664zb83m"; depends=[comperes dplyr Rcpp rlang tibble]; }; - comperes = derive2 { name="comperes"; version="0.2.3"; sha256="1mz8002zqyyzdd2ija0iqc1fm10px6ll0bsl3pmfwwdqbqx17rmz"; depends=[dplyr magrittr rlang tibble tidyr]; }; + comperes = derive2 { name="comperes"; version="0.2.4"; sha256="051fn21pzizhv1wlf9nk59cyirvv3jxdnq8mrp9l81zvxlwb7qf5"; depends=[dplyr magrittr rlang tibble tidyr]; }; + competitiontoolbox = derive2 { name="competitiontoolbox"; version="0.1.3"; sha256="0yqrnbg2chyh9idqpiq5v6wc2708a6r4z7vvlwkpnxp19saa8s06"; depends=[antitrust ggplot2 rhandsontable shiny trade]; }; completejourney = derive2 { name="completejourney"; version="1.1.0"; sha256="0ysbpmd7rglz3diy2cpcgvmmcnysradb4ddiwix7kbhzrhvhrdrs"; depends=[curl dplyr progress stringr tibble zeallot]; }; complexity = derive2 { name="complexity"; version="1.1.1"; sha256="1lpsvry88jpqfw0wkdlwjzkqjl17f4adjcqvq0dwk483mi54xnfk"; depends=[combinat shiny]; }; complexplus = derive2 { name="complexplus"; version="2.1"; sha256="16w9v7d1ckavqmr86l34frr37pkvdn0iqnb17ssb8xaggns5lgqx"; depends=[expm Matrix]; }; complmrob = derive2 { name="complmrob"; version="0.7.0"; sha256="0dvkc5y53041agkjz3rl898hkq686pxzr6flf2qx1g3jbza3pk1y"; depends=[boot ggplot2 robustbase scales]; }; - compositions = derive2 { name="compositions"; version="1.40-5"; sha256="0l9ayz2nb2wqhl7v9hkfl7pd950ba0h6hma8zqncbcxh6xh2k7l7"; depends=[bayesm robustbase tensorA]; }; - compound_Cox = derive2 { name="compound.Cox"; version="3.19"; sha256="1wl8jg916567nk0wy37in6syh7z2rw70v5jm7s0w3ifiqs5v7nzb"; depends=[numDeriv survival]; }; - comprehenr = derive2 { name="comprehenr"; version="0.6.7"; sha256="0c0wid4lch7yrz41b8n773hy4zj80sfb1lhy4pclvlsjdr5zryk6"; depends=[]; }; + compositions = derive2 { name="compositions"; version="2.0-0"; sha256="0xsx4n699q2r4pk2jrvifi3wi49lih7d1j3j6qgqqd31brg53jqr"; depends=[bayesm MASS robustbase tensorA]; }; + compound_Cox = derive2 { name="compound.Cox"; version="3.20"; sha256="18fgc58jqrjls1rkzrpy338m3yyxaqkv7dfv31a2sf551ynajcfy"; depends=[numDeriv survival]; }; + comprehenr = derive2 { name="comprehenr"; version="0.6.8"; sha256="18gw9ni9cqlkxf6hhgnwankwa09lv8jmzgk7xxs3n0gqd6kbbgw3"; depends=[]; }; + compstatr = derive2 { name="compstatr"; version="0.2.1"; sha256="0pg8yacfb7jvg9xr0gmis8a4g339isd77h6wr8dd6w900q47xac0"; depends=[dplyr fs httr janitor lubridate purrr readr rlang rvest sf stringr tibble tidyr xml2]; }; compute_es = derive2 { name="compute.es"; version="0.2-5"; sha256="00133s3l3g70xrfnxgxhvbjr8izvaj9h0c73iaiyjmlgj84x69m8"; depends=[]; }; comtradr = derive2 { name="comtradr"; version="0.2.2"; sha256="177gnmgwqns65z5y9nw4xp8qmw5z70454zb54jw1879xrgfsrciz"; depends=[httr jsonlite magrittr purrr]; }; con2aqi = derive2 { name="con2aqi"; version="0.1.0"; sha256="1gdd1y6xg26fz199hvryzsnp16qbsz13chqqxyxnkgrai1l72mhf"; depends=[]; }; conStruct = derive2 { name="conStruct"; version="1.0.4"; sha256="1klhzsxrkbz16dnm3r2qxyq2z02zqrps9kij2jy6241ni9qmnn2f"; depends=[BH caroline doParallel foreach gtools Rcpp RcppEigen rstan rstantools StanHeaders]; }; concatenate = derive2 { name="concatenate"; version="1.0.0"; sha256="1kvsw7vwa3hn97ff7r6z21h5ajs74azwv2dk4pzgyaasnbp778hw"; depends=[]; }; - concaveman = derive2 { name="concaveman"; version="1.0.0"; sha256="0b6a37h4k3p879gp4qp3297q0fzq3yn79yhkwjrcxhcl86sg5nb6"; depends=[dplyr jsonlite magrittr sf V8]; }; + concaveman = derive2 { name="concaveman"; version="1.1.0"; sha256="0b3fx3y60ibb73pqx5591jq1n86242qajfxbz3vzz6rxxspddlcz"; depends=[dplyr jsonlite magrittr sf V8]; }; conclust = derive2 { name="conclust"; version="1.1"; sha256="1k9y1mniy7s51dmm5ia693k72s2vxk5bznxxf74s7mx9n3mg2i8r"; depends=[]; }; concor = derive2 { name="concor"; version="1.0-0.1"; sha256="0hjyvi6p16cyrmq0bq7fph1r5f3adp7zpf123wkm5bkjnc5122k0"; depends=[]; }; + concorR = derive2 { name="concorR"; version="0.2.0"; sha256="1rgsindjz2mysqzafq4r6gwzwpqcqr461al4bc5dyf05ypqvf9fz"; depends=[igraph sna]; }; concordance = derive2 { name="concordance"; version="2.0.0"; sha256="1xlm0c91bsbij8dr23fh781c6bg8l74kma6x7nnapkpm7jim279x"; depends=[dplyr purrr rlang stringr tibble tidyr]; }; concreg = derive2 { name="concreg"; version="0.6"; sha256="1ncs9cpviv5kd49hahlhi7wn2yk70msi22qv8fw91hf81ccimlp2"; depends=[survival]; }; concurve = derive2 { name="concurve"; version="2.5.0"; sha256="1zmm3y1abm6gjvl9vjmsi2rn2vxgy4qp9crmlrhx3yzij58m15sq"; depends=[bcaboot boot cowplot dplyr flextable ggplot2 knitr lme4 MASS metafor officer patchwork pbmcapply ProfileLikelihood scales survival survminer tibble tidyr]; }; @@ -6326,9 +6512,10 @@ in with self; { condGEE = derive2 { name="condGEE"; version="0.1-4"; sha256="0mqj2pc91n8h3arpd4b9f7ndbcnai21c67is22qg22wj7vhhs87h"; depends=[numDeriv rootSolve]; }; condMVNorm = derive2 { name="condMVNorm"; version="2020.1"; sha256="115pxnff2ckdxx0avbs0hfdhh1sljiz1y6h7ggd5hidrxd3559m4"; depends=[mvtnorm]; }; condSURV = derive2 { name="condSURV"; version="2.0.1"; sha256="0xjpypc4fzrnfjcznyc2bslkkza4fib8nx8ff2j7xh2nf84lk3f1"; depends=[doParallel doRNG foreach KernSmooth np survival]; }; - condformat = derive2 { name="condformat"; version="0.8.0"; sha256="1x3sm3fn5lb07gmxvfaa0xnhk5mjnim90p7mwail8dmi9nygrb9d"; depends=[dplyr gridExtra gtable htmlTable htmltools knitr lazyeval magrittr rlang rmarkdown scales tibble tidyselect]; }; + condformat = derive2 { name="condformat"; version="0.9.0"; sha256="151rpnrnbj5ilckf99m6k3c26r1sr94496kws9w91faxilvl180b"; depends=[dplyr gridExtra gtable htmlTable htmltools knitr magrittr openxlsx rlang rmarkdown scales tibble tidyselect]; }; condir = derive2 { name="condir"; version="0.1.2"; sha256="1vd3nw2hhldy7igpx58p6if6q2h99d7ypb2ldxkssq6y79n8hq99"; depends=[BayesFactor effsize knitr psych shiny xtable]; }; conditionz = derive2 { name="conditionz"; version="0.1.0"; sha256="0ijnsg6n3p3y8y9il012xg5if57hdzvrgxjcykfrrlil4m7ixn6c"; depends=[R6 uuid]; }; + condmixt = derive2 { name="condmixt"; version="1.1"; sha256="1x6n3ylaa9ywvz7v63i2pvd2lxm95wq19xy741g9hy73ld7hd7zn"; depends=[evd]; }; condusco = derive2 { name="condusco"; version="0.1.0"; sha256="0zydinzlksynkz4r712rzv9qqdx8dkdz3h1ygi9cfmd6hya3580s"; depends=[assertthat bigrquery DBI jsonlite]; }; condvis = derive2 { name="condvis"; version="0.5-1"; sha256="1ngxqfa0mr86cv610da4ljypxpdvx0n5pfgj3zfksnwxlwc0dvbj"; depends=[MASS]; }; condvis2 = derive2 { name="condvis2"; version="0.1.0"; sha256="1xvxqr311wwi8ns31zqnxxb7bji3vl296j3qfq7vh0alxlhd4n4r"; depends=[cluster DendSer ggplot2 kmed plyr RColorBrewer scales shiny]; }; @@ -6338,42 +6525,45 @@ in with self; { confSAM = derive2 { name="confSAM"; version="0.2"; sha256="1l67ndya07hh0yqfbabfhsvp3hryklx0022grpr0cb7ff88d1zam"; depends=[]; }; confidence = derive2 { name="confidence"; version="1.1-2"; sha256="0m6iz59n5jpi0ig3za3nir4d4bdsysf5g47d2nakfmaz03wk520z"; depends=[ggplot2 knitr markdown plyr xtable]; }; config = derive2 { name="config"; version="0.3"; sha256="0l67nfpm42ssnk0bl4jmq6bibz8hawgfgh2s14s5c8mnimv6mpjs"; depends=[yaml]; }; - configr = derive2 { name="configr"; version="0.3.4"; sha256="0wsw5kbmkbc95ds4m311m25fn9wrc5wq06jvzjsnnh86ax2w43is"; depends=[glue ini jsonlite RcppTOML stringr yaml]; }; + configr = derive2 { name="configr"; version="0.3.5"; sha256="1qlfza9fwqdhw37gxhgxgp4x2dg1qlvdw0rf9fn6a8hgjaj9z8a3"; depends=[glue ini jsonlite RcppTOML stringr yaml]; }; configural = derive2 { name="configural"; version="0.1.1"; sha256="0xn52lg0fzd0m0k9sw90lv8vzhlp6knaya4crzl6rhfihyv9bq3m"; depends=[cli crayon dplyr stringr]; }; confinterpret = derive2 { name="confinterpret"; version="1.0.0"; sha256="0qldaqpx7kpk71zfwv465jrscwzc9w3xfv52i4h01k9aw3q6m8ja"; depends=[]; }; + confintr = derive2 { name="confintr"; version="0.1.1"; sha256="18nkgcpl43hih7l04rxv21pil48h780wjna3vm2763ffkilkk5cl"; depends=[boot]; }; conflicted = derive2 { name="conflicted"; version="1.0.4"; sha256="0xp04cdvmp3b1phazhmjqn0vmax1b2218xsb5854ffv43m7qvrra"; depends=[memoise rlang]; }; conflr = derive2 { name="conflr"; version="0.1.1"; sha256="1bjdmvi0n8746g7dxwgzh3fi33sq4bgfr0nd3nqd2caj8ryi2gv9"; depends=[askpass commonmark curl glue httr knitr miniUI purrr R6 rlang rmarkdown rstudioapi shiny stringi xml2]; }; conformalClassification = derive2 { name="conformalClassification"; version="1.0.0"; sha256="03v6xbgipb97byarqj0d38z9yb2g54mkkw343jxmi2j058z26yw7"; depends=[doParallel foreach mlbench randomForest]; }; confoundr = derive2 { name="confoundr"; version="1.2"; sha256="000vf828qv04pplx8yc8q3mafxf4g0axip6z5zbsj2581yxv9jjh"; depends=[dplyr ggplot2 gridExtra magrittr purrr rlang Rmpfr scales stringr tidyr]; }; - confreq = derive2 { name="confreq"; version="1.5.5-0"; sha256="1aww0i9mh08y05941di40f9jagy7s48rw0cs7w55gsyffl5yy1ir"; depends=[gmp]; }; - congressbr = derive2 { name="congressbr"; version="0.2.2"; sha256="1br6bhfy0i0ashz9dpv63ag2d4yqvpl7ml82hsf15gjq6mwvr1nr"; depends=[dplyr glue httr janitor lubridate magrittr progress pscl purrr stringi stringr tibble tidyr xml2]; }; + confreq = derive2 { name="confreq"; version="1.5.5-1"; sha256="0hbr2vi5ala6w2igcyqp1nv573l9mragvjv2k1bymjksjb8b8nha"; depends=[gmp]; }; conicfit = derive2 { name="conicfit"; version="1.0.4"; sha256="1d704xgiyqmbwfxnsmhqg885x10q8yqxmrk4khqpg3lh696bw97d"; depends=[geigen pracma]; }; conics = derive2 { name="conics"; version="0.3"; sha256="06p6dj5dkkcy7hg1aa7spi9py45296dk0m6n8s2n3bzh3aal5nzq"; depends=[]; }; conjoint = derive2 { name="conjoint"; version="1.41"; sha256="1iq3226a6fn1gddmh2nxlzvjcvbj7502r9520g9d4xdmk8smfx33"; depends=[AlgDesign broom cluster fpc ggfortify ggplot2]; }; conjurer = derive2 { name="conjurer"; version="1.1.1"; sha256="0rxbmr2s270sy7rbyb876sidbcjzv0g99s1n0w6pd6aymmf0715c"; depends=[]; }; connections = derive2 { name="connections"; version="0.1.1"; sha256="08fbyzyp26nh1a46p0zi3q0wzgl0cd9bjp4lhw2bwv1bv7yayamp"; depends=[DBI dbplyr dplyr pins rscontract uuid]; }; + conogive = derive2 { name="conogive"; version="1.0.0"; sha256="0a8v7v0fds0psfnbx9x45way8z1f1xn2ncgbrn5rb6fjq0a1zs4x"; depends=[assertthat checkmate mvtnorm psych]; }; conover_test = derive2 { name="conover.test"; version="1.1.5"; sha256="0f1p10klidk1xic1wd48j9rjh2fb3z6pfjx4y021lglx1w3av68k"; depends=[]; }; - conquer = derive2 { name="conquer"; version="1.0.0"; sha256="0yqk3hl0rgb71zywc8lvvdrhmzh7aij6gqk83pf3ywd69va0mq38"; depends=[matrixStats Rcpp RcppArmadillo]; }; - conquestr = derive2 { name="conquestr"; version="0.5.1"; sha256="1ha2jxh4xi39w4cznbdbbdhq5s5csmbf4p4j7blr80g72b46jvcp"; depends=[Rcpp reshape]; }; + conquer = derive2 { name="conquer"; version="1.0.1"; sha256="1c7id7wgspma5bdcirrhw7f9fp709zxpj31klivasdbvd4jgi4vb"; depends=[Matrix matrixStats Rcpp RcppArmadillo]; }; + conquestr = derive2 { name="conquestr"; version="0.8.5"; sha256="1xh09a379g1msib5fvf72llvf2gwqb7ciacw7j7iqrkb2ddpaglk"; depends=[ggplot2 ggrepel Rcpp reshape rlang stringr]; }; constants = derive2 { name="constants"; version="0.0.2"; sha256="1j9d52riwx7v1ppfdw0x517j7xh92qgskd4mj5yk9qa233brcwyy"; depends=[]; }; constellation = derive2 { name="constellation"; version="0.2.0"; sha256="1d49rnyf2z3bvx158nsmgmb0x7xcgxl9f8y98pwg5wlqck7af99q"; depends=[data_table]; }; constrainedKriging = derive2 { name="constrainedKriging"; version="0.2.4"; sha256="1a91s0b7yka37fb5pm172fmlqrhm6da370cqb9knvkg5n8vi4hys"; depends=[RandomFields rgeos sp spatialCovariance]; }; - contact = derive2 { name="contact"; version="1.2.2"; sha256="0pxjz6wra5kb2z5xahsdlnfhbiybr2dmp818vfvbrb0sp9ca4wkc"; depends=[ape data_table doParallel foreach geosphere igraph lubridate raster rgdal rgeos sf sp]; }; + contact = derive2 { name="contact"; version="1.2.4"; sha256="1xs234k1pszbjh00dpnj93ygmmrmpv86lnrsrhn4cn801s83yw2f"; depends=[ape data_table doParallel foreach igraph lubridate raster rgdal rgeos sp]; }; container = derive2 { name="container"; version="0.3.0"; sha256="128fj97mx52kap299fmhn3whnaismsd4cq3zqpbfvwxx2ii4fd33"; depends=[R6]; }; - contextual = derive2 { name="contextual"; version="0.9.8.3"; sha256="0mpbbg13ba5lwsh6rcy5g8vbfycv3182bqkgw66rn3r8fvkmy516"; depends=[data_table doParallel foreach Formula iterators itertools R_devices R6 rjson]; }; + contentid = derive2 { name="contentid"; version="0.0.4"; sha256="19ypac76gf8ajfaqr265411jhvr7wy4fa9zswfc5f2p7d3qxlhqn"; depends=[curl fs httr openssl rappdirs]; }; + contextual = derive2 { name="contextual"; version="0.9.8.4"; sha256="0lww36nymg2cla83jdvl7a42cwn0il20apciz0ddplq8rw2i0a91"; depends=[data_table doParallel foreach Formula iterators itertools R_devices R6 rjson]; }; contfrac = derive2 { name="contfrac"; version="1.1-12"; sha256="0sq5c7ny235yrkv2xc4insgxby6rvzc1qsj8h301cd2if3lwbgwm"; depends=[]; }; conting = derive2 { name="conting"; version="1.7"; sha256="08f271j3gxcp4shda08kkv0v9ayaadvxgcglfsn6hjmw4hn298zg"; depends=[BMS coda gtools mvtnorm tseries]; }; + contourPlot = derive2 { name="contourPlot"; version="0.1.4"; sha256="0m96y1nwnsk0xd05lgv553z9gagzzjf64z8zyyxvjlj53c6gmph1"; depends=[interp RColorBrewer]; }; contoureR = derive2 { name="contoureR"; version="1.0.5"; sha256="1izq1alkf24zd2sf2ir2adyrkwhdj7n89cv6z0dfh5mfqld5bkdn"; depends=[geometry plyr Rcpp reshape]; }; contrast = derive2 { name="contrast"; version="0.22"; sha256="11zz59dn63gpn455ryp0cmrx32li30yylf6ldrmw1wnn0zq702ww"; depends=[nlme rms sandwich]; }; contribution = derive2 { name="contribution"; version="0.1.0"; sha256="06y6qa7c0zifg6fqfpwry4z367ckiyk9v09n8cqc6q98c3ddkwj3"; depends=[dplyr ggplot2 gh magrittr rlang tidyr]; }; control = derive2 { name="control"; version="0.2.5"; sha256="02s8h5kwpzfrivx3ign84gwlybkcs03ibawyxdny9zz5yhb7x3bs"; depends=[expm Matrix pracma signal]; }; controlTest = derive2 { name="controlTest"; version="1.1.0"; sha256="19r8nvi35ldzgayifskjj706fv76hv6sj68yvggybp27rgyqbjfl"; depends=[survival]; }; - convergEU = derive2 { name="convergEU"; version="0.4.2"; sha256="1zdfhfzpgpjx24gzz9cn98nbn42c7r5iq2fr6bwpn1lniw3hgx27"; depends=[broom caTools devtools dplyr eurostat formattable ggplot2 ggpubr gridExtra kableExtra knitr magrittr purrr readr readxl rlang rmarkdown stringr tibble tidyr tidyverse]; }; + convergEU = derive2 { name="convergEU"; version="0.4.7"; sha256="05jagjfh2hy3khf8zfyyngfhm83s48pvhma2h7c99jhwa22vsw5n"; depends=[broom caTools dplyr eurostat ggplot2 ggpubr purrr rlang rmarkdown stringr tibble tidyr]; }; convertGraph = derive2 { name="convertGraph"; version="0.1"; sha256="1jsrygj6ydzc0nzyzaq95j4blqavj7dqz182vgm1ckv8an3if0jx"; depends=[]; }; convertr = derive2 { name="convertr"; version="0.1"; sha256="1y9aq5in2qv1323amblmq3g22flpqvpkgkrw12kahg56mqf2b3iq"; depends=[DT miniUI rstudioapi shiny]; }; convevol = derive2 { name="convevol"; version="1.3"; sha256="1b0lygbrdm6rqascck5iwjnm248lklc4cxr71qlgand5jsblpcnn"; depends=[ape cluster geiger MASS phytools]; }; convexjlr = derive2 { name="convexjlr"; version="0.8.1"; sha256="1x2ra1xcyd7bvc7wq49wpihh0g9ygh1bq5214vvrhfrjfjifvlaw"; depends=[JuliaCall magrittr]; }; - convey = derive2 { name="convey"; version="0.2.1"; sha256="1fcfzcpiy35xr2i81q002h07zf8gvbv1m5is7j475bi13666ynzh"; depends=[survey]; }; + convey = derive2 { name="convey"; version="0.2.2"; sha256="04sdlm2gzdmmz143iyfhaw0dilhdryq8sgvkxwmfl2s4dagz1y4q"; depends=[survey]; }; convoSPAT = derive2 { name="convoSPAT"; version="1.2.6"; sha256="17zgrwmlpzir5z8a1blf8r2sblfzbrmbdgy1b73p7l0aayhqmywp"; depends=[ellipse fields MASS plotrix StatMatch]; }; cooccur = derive2 { name="cooccur"; version="1.3"; sha256="1wlaghhi4f3v8kzwhcgq3c6as7v3zlpkzhb232qz1amr7f0058kv"; depends=[ggplot2 gmp reshape2]; }; cooccurNet = derive2 { name="cooccurNet"; version="0.1.6"; sha256="1vqfmvjrxxn977jrry47wn4lag4yi4bkyxwlis3n1ly39kkmyh2j"; depends=[bigmemory doParallel foreach igraph knitr Matrix pryr seqinr]; }; @@ -6381,18 +6571,20 @@ in with self; { coopProductGame = derive2 { name="coopProductGame"; version="2.0"; sha256="1348pgqfvvysdixsjibgkvwjsmqasnlmwf9kyr39lw8jb81z25h0"; depends=[dplyr GameTheory ggplot2 gtools kappalab lpSolveAPI]; }; cooptrees = derive2 { name="cooptrees"; version="1.0"; sha256="0izvwna1jsqik3v5fz1r4c86irvma42clw0p4rdvwswv5pk698i1"; depends=[gtools igraph optrees]; }; copBasic = derive2 { name="copBasic"; version="2.1.5"; sha256="0p7ngjpfhl4mjrcjmadik2ly5zzyjfafywjmaxza7frgrj6bflf4"; depends=[lmomco randtoolbox]; }; - copCAR = derive2 { name="copCAR"; version="2.0-2"; sha256="032gphv64v2mmy63q86qgpa31i36ix6fkjsdxmzgqyxcyzgb0jcy"; depends=[mcmcse numDeriv Rcpp RcppArmadillo spam]; }; + copCAR = derive2 { name="copCAR"; version="2.0-3"; sha256="1f3i38awcv21ad112ivicr9gn7k6ycz45wl1cdsnrjhi7w6kh9p6"; depends=[mcmcse numDeriv Rcpp RcppArmadillo spam]; }; cope = derive2 { name="cope"; version="0.2.3"; sha256="1r02nb6wy25ixhdcbqqz167s7ny3hydpxfxry5ar4136qvcamgyy"; depends=[abind fields maps MASS Matrix mvtnorm nlme]; }; copent = derive2 { name="copent"; version="0.1"; sha256="100mkig645gis01w7cbr1hyn7kmiwi5avmwknymimchqwyf026m6"; depends=[]; }; coppeCosenzaR = derive2 { name="coppeCosenzaR"; version="0.1.3"; sha256="1chwsfyaf5rmlsypr43n7px8b2220dfa5mzcriq1swylgbx4181l"; depends=[]; }; coprimary = derive2 { name="coprimary"; version="1.0"; sha256="0pjln9p5lzv6wl5xrz0kb90hnjlnp7ch2kvh054nxdbmlxv5akc3"; depends=[digest gsDesign plyr proto]; }; cops = derive2 { name="cops"; version="1.0-2"; sha256="0ifp3cai490lw6dnyyjj4822x8g2mswhaamnw5ljwnxdbmjwhhrw"; depends=[cmaes cordillera crs dfoptim GenSA MASS minqa NlcOptim nloptr pso rgenoud rgl Rsolnp scatterplot3d smacof subplex]; }; - copula = derive2 { name="copula"; version="0.999-20"; sha256="1c0gbjfhvm839cdmy7n15an9jg6qygdq8bvp9awhbjysway4fgbx"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm numDeriv pcaPP pspline stabledist]; }; + copula = derive2 { name="copula"; version="1.0-0"; sha256="1hk25qixg0wwnaz4bh2dz275apkdjqahdxixzq6al9k9gi5cr8si"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm numDeriv pcaPP pspline stabledist]; }; copulaData = derive2 { name="copulaData"; version="0.0-1"; sha256="1s917g8wasxndg1xq4b4fjaq29nyzzigpflgqcy4rxdb7r54dl0z"; depends=[]; }; copulaedas = derive2 { name="copulaedas"; version="1.4.3"; sha256="01wp8jnz7kndknj7lh9ia7mm41k1vbaksalyy9v19bb77yhgzmba"; depends=[copula mvtnorm truncnorm vines]; }; - corHMM = derive2 { name="corHMM"; version="1.22"; sha256="03di9250hjn5fiwn47f0pr4zprmsza4if3xpmy3j1czahc8zlqnj"; depends=[ape corpcor expm GenSA nloptr nnet numDeriv phangorn Rmpfr]; }; - corTest = derive2 { name="corTest"; version="0.9.8"; sha256="03dhy84a7caf030br9ybr5zxfq49y72gwj462ay245b09k4f2v3r"; depends=[MASS]; }; + corHMM = derive2 { name="corHMM"; version="2.3"; sha256="11mxwxm1lgkiq1v0bynk51b7s8hndp1a6cn6hidjprck4v205im5"; depends=[ape corpcor expm GenSA igraph MASS nloptr nnet numDeriv phangorn phytools Rmpfr viridis]; }; + corTest = derive2 { name="corTest"; version="1.0.4"; sha256="15mipyd7lv9l596h6gk7mywdnc9xw2kaz35bj9pw5q8rh91dfpsr"; depends=[MASS]; }; corTools = derive2 { name="corTools"; version="1.0"; sha256="0arvqk2xp19ap73zmdk0kb1fycb3v2mf65b4bhanvcqwr4kg4vdk"; depends=[]; }; + corazon = derive2 { name="corazon"; version="0.1.0"; sha256="1advzmbmnpq18ym2k8rcxhsdzfscl68jss8wbqcir68951x2aqi3"; depends=[htmltools]; }; + corclass = derive2 { name="corclass"; version="0.2"; sha256="0hsbbzzadj8yc4zmb88ncx90sfxpyfd9xmdwhb08m1z1jw96zhxp"; depends=[igraph]; }; cord = derive2 { name="cord"; version="0.1.1"; sha256="18xj6cwmx1a7p3vqx5img8qf8s75nc6pcv78v15j081pgn786ma5"; depends=[Rcpp RcppArmadillo]; }; cordillera = derive2 { name="cordillera"; version="0.8-0"; sha256="0cpysfivwmim36gcqn1i7450a33hv4pdbvil7syb0hr7vdm083dd"; depends=[dbscan yesno]; }; coreCT = derive2 { name="coreCT"; version="1.3.2"; sha256="0xxcgd5qar9fwhyzs5g3fc45naca4xmcgmw88ygav02vv5y93w03"; depends=[igraph oro_dicom plyr raster]; }; @@ -6400,11 +6592,12 @@ in with self; { coreSim = derive2 { name="coreSim"; version="0.2.4"; sha256="1fhlss420rhs21l9i2ag5g3j0vnrkpqdh13ca4rwfan6h35qr3sm"; depends=[dplyr MASS]; }; coreTDT = derive2 { name="coreTDT"; version="1.0"; sha256="14rnh61gk3m6g8rq77hm9ybds0px15di2mxm3jiyfdfynx5ng58f"; depends=[]; }; corehunter = derive2 { name="corehunter"; version="3.2.1"; sha256="0cxvhmi768kz3q8hydb6y9nqvc8hvkmq8nc5yfry4k94whk12wax"; depends=[naturalsort rJava]; }; + corels = derive2 { name="corels"; version="0.0.2"; sha256="0b8fwm2z1jaslg2b0phb4w31qvdp4g91q0jf2dfa6g7gg8lh4crn"; depends=[Rcpp]; }; corkscrew = derive2 { name="corkscrew"; version="1.1"; sha256="1nb81r4lsrajcj3xz3f7p6xznnb38yg3rnnh44rd3kabca4d8r1s"; depends=[ggplot2 gplots igraph RColorBrewer]; }; corlink = derive2 { name="corlink"; version="1.0.0"; sha256="06n9pcvbn8y9gy0mn9c0sw05424ss8smpaw3ly6a785cmj3d9b6m"; depends=[]; }; cornet = derive2 { name="cornet"; version="0.0.4"; sha256="0chp7ifcc0a9dz6ang4wjiwj7q309g9nsgyql6qmml985d8bazcy"; depends=[glmnet palasso]; }; - coroICA = derive2 { name="coroICA"; version="1.0.1"; sha256="0hjy1sdii8kk859bj1xv3vh1hzxznhymhgdb583z57i0hqxnijiv"; depends=[MASS]; }; - coronavirus = derive2 { name="coronavirus"; version="0.1.0"; sha256="19im0kb6pv8czbq3h675nhfa1r6jj9whi2mq2wi3ldnzfa925bqw"; depends=[]; }; + coroICA = derive2 { name="coroICA"; version="1.0.2"; sha256="0pcz2256liczrn2gik8b5331rgzlxjrm7rzn1ialhifkiinifnva"; depends=[MASS]; }; + coronavirus = derive2 { name="coronavirus"; version="0.3.0"; sha256="0xcyl5b36hj522rgf7469aklrw6ld17jbbf1w3w9cl7x09bhmbck"; depends=[devtools]; }; corpcor = derive2 { name="corpcor"; version="1.6.9"; sha256="1hi3i9d3841snppq1ks5pd8cliq1b4rm4dpsczmfqvwksg8snkrf"; depends=[]; }; corpora = derive2 { name="corpora"; version="0.5"; sha256="0b4yw37msx9h8hf5mjs4h10gdmc1qc2gv5bzyj1r90n4gcli042d"; depends=[]; }; corporaexplorer = derive2 { name="corporaexplorer"; version="0.8.2"; sha256="14l64mcqfa2ayyl6d48s9fc2qh485wk02s23cy4nssn7sg1b3a5z"; depends=[data_table dplyr ggplot2 lubridate magrittr padr plyr RColorBrewer rlang rmarkdown scales shiny shinydashboard shinyjs shinyWidgets stringi stringr tibble tidyr]; }; @@ -6415,17 +6608,18 @@ in with self; { corrcoverage = derive2 { name="corrcoverage"; version="1.2.1"; sha256="0r5n2g341jlinwrxxwxkav9i6qsf097pmfi07aiq663b13r3864x"; depends=[data_table magrittr matrixStats Rcpp RcppArmadillo]; }; correctedAUC = derive2 { name="correctedAUC"; version="0.0.3"; sha256="0c2kq7asq5mp48p8niqb84wnw4q2q2985wxbrywrhsszm9p3xspb"; depends=[ICC mnormt]; }; corregp = derive2 { name="corregp"; version="2.0.2"; sha256="1v048dibn2x3y5mi2damcsr9i5kdig5n53g5j9gf31lqkzzjmnh3"; depends=[data_table diagram ellipse gplots rgl]; }; - correlation = derive2 { name="correlation"; version="0.2.0"; sha256="0ckwpsvpnv7caz8pgxy5cf2pfhgvkgd29jm3vwan5nbyjwhgc9nb"; depends=[bayestestR effectsize insight parameters]; }; - correlationfunnel = derive2 { name="correlationfunnel"; version="0.1.0"; sha256="0kg770nfr1cd31b8y8g1kx046k401lha9hbj7lq543gl7s77aw2x"; depends=[cli crayon dplyr forcats ggplot2 ggrepel magrittr plotly purrr recipes rlang rstudioapi stringr tibble tidyr]; }; + correlation = derive2 { name="correlation"; version="0.3.0"; sha256="0ai1accmjw8kqwnp5hx4zn4a115yzppcnczmvmhhr63dslff4rqv"; depends=[bayestestR effectsize insight parameters]; }; + correlationfunnel = derive2 { name="correlationfunnel"; version="0.2.0"; sha256="0xil7cihqk7gzpy0q97sg5sw5z0gy7zqvx0f0bizcfks9gwp43cv"; depends=[cli crayon dplyr forcats ggplot2 ggrepel magrittr plotly purrr recipes rlang rstudioapi stringr tibble tidyr]; }; correlbinom = derive2 { name="correlbinom"; version="0.0.1"; sha256="1ix3ccxzr7vqblbda5awsva3h95b69v7kc6adz622bbi8r36xxcq"; depends=[Rmpfr]; }; corrgram = derive2 { name="corrgram"; version="1.13"; sha256="1g5159vihsz5a2cfmg4g4i1lildn2x2wzck5sd0vml5810rxjpma"; depends=[seriation]; }; + corrgrapher = derive2 { name="corrgrapher"; version="1.0.2"; sha256="0298wbkfs9kbiq3ilnqlcmd9qmk4ivhrdgdqcmfafymlja8376dc"; depends=[DALEX ggplot2 htmltools ingredients jsonlite knitr visNetwork]; }; corrplot = derive2 { name="corrplot"; version="0.84"; sha256="1k03qd8db7pwg1v318xapx5mpiypiz2n07qr19c4b45diri5xkhd"; depends=[]; }; corrr = derive2 { name="corrr"; version="0.4.2"; sha256="1mk6vvsmankrc6m5rm3y58wblsbyqar6js36c73x5g3fs95s58fj"; depends=[dplyr ggplot2 ggrepel purrr rlang seriation tibble]; }; corrsieve = derive2 { name="corrsieve"; version="1.6-8"; sha256="0ak3j9khcwv5rxbicck2sr260wpmd3xj254y7pdavx2fk0b72yxs"; depends=[]; }; corset = derive2 { name="corset"; version="0.1-4"; sha256="0ladyqvkys4cldvbhkii9jwn1k5p1ym2g5bgdlz1hq1sv30ixn2f"; depends=[]; }; - cort = derive2 { name="cort"; version="0.3.0"; sha256="1krb3d0g060b9a5a3pb782vd632lfncbxbmcvh6q21as0flm2hpv"; depends=[furrr magrittr nloptr osqp purrr Rcpp Rdpack]; }; - corto = derive2 { name="corto"; version="1.0.8"; sha256="0p9issdhi5iz7fjc0qc3s3vp286j1b3aydjvj273zcjshjhc27ia"; depends=[dplyr knitr pbapply plotrix rmarkdown]; }; - corx = derive2 { name="corx"; version="1.0.2"; sha256="1k9k1w5i5yky6c9jn5s80rf0r5r6qn7w0xwamjbankp2i4ryna5z"; depends=[clipr crayon ggcorrplot glue moments ppcor psych tidyselect]; }; + cort = derive2 { name="cort"; version="0.3.1"; sha256="0gjvy426sn503kpxs4106ih02q7x0q5fygn0xwh3n2zj3pqlmyrn"; depends=[furrr nloptr osqp purrr Rcpp Rdpack]; }; + corto = derive2 { name="corto"; version="1.1.0"; sha256="0kww1ij6km4qjgnp9xlg3q8wszcamdxd7ysdyhx6bskhr154g35w"; depends=[dplyr knitr pbapply plotrix rmarkdown]; }; + corx = derive2 { name="corx"; version="1.0.6.1"; sha256="179fxjagbq33549zyk234kz9ajbifl7qpmdy0lrw9vzjc8aqbycf"; depends=[clipr crayon ggcorrplot ggplot2 ggpubr glue magrittr moments ppcor psych tidyselect]; }; cosa = derive2 { name="cosa"; version="2.0.0"; sha256="1ra1m75ay829xlhjax82px4ffflnfgh2mrmzzj4i8ml545d9hmgr"; depends=[msm nloptr]; }; cosinor = derive2 { name="cosinor"; version="1.1"; sha256="02nnqg51vq48lzk667cyarnmhcf5mifnsdij7dlgqvz2k4fdq4pl"; depends=[ggplot2 shiny]; }; cosinor2 = derive2 { name="cosinor2"; version="0.2.1"; sha256="1pp0z86fflqkkllfrzx3vj98kzxjwnawr4a2d8z5q6zhq6v5qrvf"; depends=[cosinor cowplot ggplot2 Hmisc magrittr matrixStats purrr scales stringr]; }; @@ -6440,9 +6634,9 @@ in with self; { countToFPKM = derive2 { name="countToFPKM"; version="1.0"; sha256="0h89knii8zkbq0lw7yn3qzak30s7bifq53ga4vy6za6hqwc53x2j"; depends=[circlize ComplexHeatmap]; }; countTransformers = derive2 { name="countTransformers"; version="0.0.6"; sha256="14n2sv7wqzslrzg0ag473ljj9mvha94161p5yh2h9l1vx7xliimf"; depends=[Biobase limma MASS]; }; countcolors = derive2 { name="countcolors"; version="0.9.1"; sha256="1gnwmw3inh8asbk6qba34vzx1k2cnh4m9d1346gxhzhlxvl6xiza"; depends=[colordistance jpeg png]; }; - countfitteR = derive2 { name="countfitteR"; version="1.0"; sha256="1kb7na35xk257a6bd9ihgbn13ygn5s553s9nph0hg7iw5nikknap"; depends=[ggplot2 MASS shiny]; }; + countfitteR = derive2 { name="countfitteR"; version="1.2"; sha256="020jmhrkinzk1zv92my16jsqrq1s9iql9881nnly1nbb8a1iwf11"; depends=[ggplot2 MASS pscl shiny]; }; countgmifs = derive2 { name="countgmifs"; version="0.0.2"; sha256="0k6fjg0v9n7vi89wd025gdjh1q3l6nnc5yn8i2bfw0i5vmv8rhi3"; depends=[MASS]; }; - countrycode = derive2 { name="countrycode"; version="1.1.2"; sha256="0ha2qmsmdrb6dkw62srcl1jxljkhh67jaj96ypz91c0sqz11zjjf"; depends=[]; }; + countrycode = derive2 { name="countrycode"; version="1.2.0"; sha256="0h6x578pci8rch52zan8sxzgwj0c9qpw254zz4pm2gf3vh15giij"; depends=[]; }; countyfloods = derive2 { name="countyfloods"; version="0.1.0"; sha256="0ld8p8dfk9khvwffbn8sad0j3an25s7cvbi6jxljgx4zc6ldh699"; depends=[dataRetrieval dplyr ggplot2 lubridate maps plyr R_utils tidyr]; }; countytimezones = derive2 { name="countytimezones"; version="1.0.0"; sha256="0sk22fmz9d3wvlfvjl1xdavvl04q1ywy8ww2gi5am3yiizkf0v9w"; depends=[dplyr lubridate]; }; countyweather = derive2 { name="countyweather"; version="0.1.0"; sha256="0q56bnh9x6jyj1sdd1q4yv2n774mbv268pgp285bjybgqm2pyisz"; depends=[dplyr geosphere ggmap ggplot2 lubridate purrr raster rnoaa sp stringi tibble tidyr tigris]; }; @@ -6451,29 +6645,34 @@ in with self; { covRobust = derive2 { name="covRobust"; version="1.1-3"; sha256="0zcfala4l0j4w0sx5hlw40vxiypans3d7pgkxy25nj0d2m1jkvba"; depends=[]; }; covTestR = derive2 { name="covTestR"; version="0.1.4"; sha256="0j9kay8lwkhpdyg0fbfars1m58v0i58v1v5sm7m72s7kz8qh2yfs"; depends=[purrr Rcpp RcppArmadillo rlang]; }; covafillr = derive2 { name="covafillr"; version="0.4.4"; sha256="1vsay0qlqcw3l6xp18rxrkhwsadsv9rpxwpj9f4d3vlr8inkiv4h"; depends=[Rcpp RcppEigen]; }; - covatest = derive2 { name="covatest"; version="1.1.2"; sha256="08cff9ppw94r7bicgc4hrcgymslgn390hw26z7xnhdgfj7swq1nn"; depends=[gstat lubridate matrixcalc sp spacetime zoo]; }; + covatest = derive2 { name="covatest"; version="1.1.3"; sha256="1vhdm8xhzy6mnd81lqqmv4zxwh3x7pc8nrnimcwgdgprlw2fhs0b"; depends=[gstat lubridate matrixcalc sp spacetime zoo]; }; coveffectsplot = derive2 { name="coveffectsplot"; version="0.0.9"; sha256="1nz7r2fqmfgfg37dcnifljm22ifipjydfcvf2dl03d10av67c0cn"; depends=[colourpicker data_table dplyr egg ggplot2 ggstance markdown shiny shinyjs table1 tidyr]; }; covequal = derive2 { name="covequal"; version="0.1.0"; sha256="1qj6djqf1rnjmnaz1nryj9dc104082w258dzjjp5q18gg1ck8v0c"; depends=[corpcor RMTstat]; }; covfefe = derive2 { name="covfefe"; version="0.1.0"; sha256="178qc77y4bn04qad3g70wr8y4v0ggyg807w67m8wvhbcxqr8yq7c"; depends=[tokenizers]; }; - covglasso = derive2 { name="covglasso"; version="1.0.1"; sha256="1wyh5f7rhwrk042wcr31db4v0wpd12kxwfg1qqszdg3jq6xbyz25"; depends=[Rcpp RcppArmadillo]; }; - covid19_analytics = derive2 { name="covid19.analytics"; version="1.0.1"; sha256="1lig3sdx6a9r2b1mz3ichm0scjb9akaar0qziq7vsfp8ynsgb11r"; depends=[ape deSolve gplots htmlwidgets pheatmap plotly]; }; + covglasso = derive2 { name="covglasso"; version="1.0.2"; sha256="1aq6x6bq24v1398kzw3ai4arjmma09y2p49wp6k77xsl32nkbhkz"; depends=[Rcpp RcppArmadillo]; }; + covid19_analytics = derive2 { name="covid19.analytics"; version="1.1.1"; sha256="0qxvf2x8fb11hnb5ivyhi8isf7hax94qa9vm42b073vskdz85q9l"; depends=[ape deSolve gplots htmlwidgets pheatmap plotly readxl]; }; + covid19dbcand = derive2 { name="covid19dbcand"; version="0.1.0"; sha256="0dqi2qgwrvv83c19gxabz857hai571bwnpyb8v2ygr9m1srz26y6"; depends=[]; }; covid19france = derive2 { name="covid19france"; version="0.1.0"; sha256="11072mc794l0m84k2b08zhyfvxf6n6ym91i7kkm3cbirxp6bhnqy"; depends=[dplyr glue lubridate magrittr readr stringr tidyr]; }; - covid19italy = derive2 { name="covid19italy"; version="0.1.0"; sha256="1wd4f97gmw7l9zc0dpfwxii8gfhnwhk0c04gjvwk9xjdp5psx5gb"; depends=[devtools]; }; - covid19us = derive2 { name="covid19us"; version="0.1.2"; sha256="13sj6pz81czima6n5zi1vdbzjbxa37nc6l6md3ix6w9rdhiajfbg"; depends=[curl dplyr glue httr lubridate magrittr purrr snakecase stringr tibble tidyr]; }; + covid19italy = derive2 { name="covid19italy"; version="0.3.0"; sha256="1kqvpiy6ib3amx2cpkj99wm5m9y96b5snzyzhhd7qn31mn2l6hnf"; depends=[devtools]; }; + covid19mobility = derive2 { name="covid19mobility"; version="0.1.1"; sha256="1n8w1gkyz98r3svnwksl10ldmmfscyycl81xq9w8497cq6vj4gz1"; depends=[dplyr glue janitor jsonlite lubridate magrittr readr stringi tidyr tigris]; }; + covid19nytimes = derive2 { name="covid19nytimes"; version="0.1.3"; sha256="1j7frjl052pjping5s7cacvfi62i8hdfcmfmvmb02ijhl4gh5dnm"; depends=[dplyr magrittr readr rlang tibble tidyr]; }; + covid19us = derive2 { name="covid19us"; version="0.1.6"; sha256="0zgz1iaj7g9aysklmb0fgv3ack7f134jhf4903vdfz5194w2p25l"; depends=[curl dplyr glue httr lubridate magrittr purrr snakecase stringr tibble tidyr]; }; + covidregionaldata = derive2 { name="covidregionaldata"; version="0.5.0"; sha256="0cgq9xzs8zcxzz22cm5gs8l6ymjf19my4568zfl6ca65s5g9c8w7"; depends=[countrycode dplyr httr jsonlite lubridate magrittr memoise purrr readr readxl rvest stringr tibble tidyr xml2 yaml]; }; covr = derive2 { name="covr"; version="3.5.0"; sha256="1pvr95h7jg9hqq1qq1cccy323pkxldrwafl08151cc410499k4fb"; depends=[crayon digest httr jsonlite rex withr yaml]; }; covreg = derive2 { name="covreg"; version="1.0"; sha256="0v19yhknklmgl58zhvg4szznb374cdh65i7s8pcj2nwrarycwzaq"; depends=[]; }; covsep = derive2 { name="covsep"; version="1.1.0"; sha256="19dvwhl85yx9ddwxvnq5sdd534s6llcw61gckrav48hq49x1bqld"; depends=[mvtnorm]; }; + covsim = derive2 { name="covsim"; version="0.1.0"; sha256="1012fgxn7z85bk1a23v5zswa29njlbdnd9llikp1qy0mrraqlx2h"; depends=[gsl lavaan MASS nleqslv PearsonDS Rcpp rvinecopulib]; }; cowbell = derive2 { name="cowbell"; version="0.1.0"; sha256="1zz0g30zvqfk5lh09y90iq3s7x2wwbs852i3d56mfp926gxdxc2y"; depends=[ggplot2 misc3d rgl]; }; cowplot = derive2 { name="cowplot"; version="1.0.0"; sha256="19cqdhgfyr1wj0fz0c5ly8f0aiy9sfgzq6lzb78hkx0hdp2agybh"; depends=[ggplot2 gtable rlang scales]; }; cowsay = derive2 { name="cowsay"; version="0.8.0"; sha256="12hximrdpikkczpwqjmah11nbwzyf7j1x7zcxa7igqwq8nfgv2yv"; depends=[crayon fortunes rmsfact]; }; - coxed = derive2 { name="coxed"; version="0.3.2"; sha256="1pj0w7a40zmnsmvlqi8kxa4psyijqwwjyjmvcvbs9xylqlwna6ih"; depends=[dplyr ggplot2 gridExtra mgcv PermAlgo rms survival tidyr]; }; + coxed = derive2 { name="coxed"; version="0.3.3"; sha256="09jnqza8wp2palayb0vsz43qmh8470gxil1l7g3b65lmxa7wpmnh"; depends=[dplyr ggplot2 gridExtra mediation mgcv PermAlgo rms survival tidyr]; }; coxinterval = derive2 { name="coxinterval"; version="1.2"; sha256="0vb7vmzbb2dsihx04jbp2yvzcr033g435mywmwimqhfqdrmjx3fi"; depends=[Matrix survival timereg]; }; coxme = derive2 { name="coxme"; version="2.2-16"; sha256="04aid8v0y2afwwbfm39np1pgdla4jw427gy2wazsphf495b4pkm0"; depends=[bdsmatrix Matrix nlme survival]; }; - coxmeg = derive2 { name="coxmeg"; version="1.0.10"; sha256="00gp0a7fx7xjk6wccrmwywgvxk8bcdqv9ph1z53qx8mqxyqnz4g6"; depends=[coxme MASS Matrix matrixcalc microbenchmark nloptr rARPACK Rcpp RcppEigen SNPRelate]; }; + coxmeg = derive2 { name="coxmeg"; version="1.0.11"; sha256="03a0arzgh12ah62dxfdp3yb25xp0h1ia5hqb3gf3ywrdr78zp8fa"; depends=[coxme MASS Matrix matrixcalc microbenchmark nloptr rARPACK Rcpp RcppEigen SNPRelate]; }; coxphMIC = derive2 { name="coxphMIC"; version="0.1.0"; sha256="0lmma5wzcczr762xqa4yamvwvyviqxk8gdrps3sydg3n14hckp6d"; depends=[numDeriv survival]; }; coxphSGD = derive2 { name="coxphSGD"; version="0.2.1"; sha256="17ga33v7a89dsygk5yypkz03x7dvjhibnwlvwfvgb2p7djd8w465"; depends=[survival]; }; coxphf = derive2 { name="coxphf"; version="1.13"; sha256="16bman8xv5xx7gg8s54sj3hc4isqxk4h3q93h4q3h3j0bdvww2yy"; depends=[survival]; }; - coxphw = derive2 { name="coxphw"; version="4.0.1"; sha256="116dp6zispa8k7y6jrn4v9ipf0jqdhj68w9qqc2qwcapawvrd0nh"; depends=[survival]; }; + coxphw = derive2 { name="coxphw"; version="4.0.2"; sha256="08bfl21608i5jkk993qjpnh36xbfsm2xx22rpff0v6ipalj9vmj2"; depends=[survival]; }; coxrobust = derive2 { name="coxrobust"; version="1.0"; sha256="08hp0fz5gfxgs3ipglj6qfr6v63kzxkrzg650bmzabq8dvrxd97q"; depends=[survival]; }; coxrt = derive2 { name="coxrt"; version="1.0.3"; sha256="1xggczjx5psl4m4m83vh4y6swnh3pf9rngnzx3268iznfz1g43h2"; depends=[BB ggplot2 gss inline Rcpp RcppArmadillo survival]; }; coxsei = derive2 { name="coxsei"; version="0.3"; sha256="1k3xsjwv1ji8n2qry2j93svr8a114mxkdl5y2zwz7mp82dmv0ld6"; depends=[]; }; @@ -6485,11 +6684,11 @@ in with self; { cpk = derive2 { name="cpk"; version="1.3-1"; sha256="1njmk2w6zbp6j373v5nd1b6b8ni4slgzpf9qxn5wnqlws8801n73"; depends=[]; }; cplexAPI = derive2 { name="cplexAPI"; version="1.3.6"; sha256="1yj0ighr64v1wdz40ml8dmypa01r6r9lr59fc0mfq4n1l0df62gw"; depends=[]; }; cplm = derive2 { name="cplm"; version="0.7-8"; sha256="0gvl3xwqbyqgqd42l97ryy8qsf23njqfgvc16w21124s77wsixaw"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; - cplots = derive2 { name="cplots"; version="0.4-0"; sha256="1k4kazw7lw2d991brnzhma6qvg8kwslrbi9q4gy61x02wcig927n"; depends=[circular]; }; cpm = derive2 { name="cpm"; version="2.2"; sha256="1n1iqhalp99mbh8jha0pv759fb97sqxdiiq9bxy3wm6aqmssvdb1"; depends=[]; }; + cpp11 = derive2 { name="cpp11"; version="0.2.1"; sha256="1113y61lj4cg1d2yjavdx9zih5rzb4pnxmj5v3sr4bhzlxz2scda"; depends=[]; }; cppRouting = derive2 { name="cppRouting"; version="2.0"; sha256="0yfiyg1clnl85lk5ah8dcchv71drk6r093vpl82xnczyan5z94sr"; depends=[data_table Rcpp RcppParallel RcppProgress]; }; - cppcor = derive2 { name="cppcor"; version="1.2"; sha256="0x55dx7q5mqqr3mhkkq9qs6gwfzrlgay9clasp9a736drmpgm6vb"; depends=[caret doParallel e1071 foreach gWidgets gWidgetsRGtk2 mvtnorm pacman]; }; cpr = derive2 { name="cpr"; version="0.2.3"; sha256="1a2lza1bw74xzrs17a9gr9mnpvnnrykhwd73yqi63wp3k4sm42rb"; depends=[dplyr ggplot2 lazyeval lme4 magrittr plot3D Rcpp RcppArmadillo rgl tibble tidyr]; }; + cprobit = derive2 { name="cprobit"; version="1.0.2"; sha256="16fnndpkd226paahmadsddakj4yhybw7lp3csr73fwv78zfl2fj9"; depends=[car ggplot2 gridExtra nortest]; }; cprr = derive2 { name="cprr"; version="0.2.0"; sha256="049xnma0rdnya7zp05iraq15nwjgmdmli9g7xxprab822047vld7"; depends=[]; }; cpsurvsim = derive2 { name="cpsurvsim"; version="1.2.0"; sha256="1fn88cqryji1syzhnx726m5svxnrlyynxk4jhp5ny8g3knai6nnk"; depends=[Hmisc knitr plyr]; }; cpt = derive2 { name="cpt"; version="1.0.2"; sha256="0j9ns8qhcvwxnzl9rc59vmh5jdahnni5dxpmi38gxvvj5k9hd8p7"; depends=[glmnet MASS nnet randomForest]; }; @@ -6499,6 +6698,7 @@ in with self; { cqrReg = derive2 { name="cqrReg"; version="1.2"; sha256="1sn8pkbqb058lbysdf2y1s734351a91kwbanplyzv3makbbdm4ca"; depends=[quantreg Rcpp RcppArmadillo]; }; cquad = derive2 { name="cquad"; version="2.1"; sha256="1cq57qd33cbzhgnnw4fk36xch0prwr9a404sxi7b4ijwgzw84d0h"; depends=[MASS plm]; }; cramer = derive2 { name="cramer"; version="0.9-3"; sha256="1kdad8nndhics4282gfy9ncllk2kpawdy8ybq71vcd7hc7kf0zq5"; depends=[boot]; }; + crandep = derive2 { name="crandep"; version="0.1.0"; sha256="1dfm4vf3x67q9l10dh4bw6d75argqfhmfd0j3bjr7bv9bhn1m1a7"; depends=[dplyr igraph Rcpp RcppArmadillo RcppGSL rvest stringr xml2]; }; crank = derive2 { name="crank"; version="1.1-2"; sha256="0wwbdh5sfi2bg13nrlkxxij4k053kjx9afm4gjpgs6iir6pml711"; depends=[]; }; cranlike = derive2 { name="cranlike"; version="1.0.2"; sha256="06xgxgwpmfrwmcd0gnr9prjjbhd1y0ky1zb8yh09v0bvsf6ixnyx"; depends=[DBI debugme desc RSQLite]; }; cranlogs = derive2 { name="cranlogs"; version="2.1.1"; sha256="02d9qrqyjj33naq3g7ykaw9dzzl1dq8qf13id6h7kfx1fvx9b7zd"; depends=[httr jsonlite]; }; @@ -6509,23 +6709,24 @@ in with self; { crayon = derive2 { name="crayon"; version="1.3.4"; sha256="0s7s6vc3ww8pzanpjisym4jjvwcc5pi2qg8srx7jqlz9j3wrnvpw"; depends=[]; }; crblocks = derive2 { name="crblocks"; version="1.0-0"; sha256="0y101kgi7ryjv18fyjp0ralp4qj7kgshmbd4mf7n3hdjay0znss5"; depends=[]; }; crch = derive2 { name="crch"; version="1.0-4"; sha256="18qjvh1lkw1f6rrhnb21f30xxrcq8whbs3x1jgkw6q14rf1483ri"; depends=[Formula ordinal sandwich scoringRules]; }; - credentials = derive2 { name="credentials"; version="1.1"; sha256="0izwskymymkxdwsdj7zapqpkc6g37c0m6c2na0y00s1kwr73d2qd"; depends=[askpass curl jsonlite openssl sys]; }; - creditmodel = derive2 { name="creditmodel"; version="1.1.9"; sha256="19jgxckjyssvr6nv6vsqizm3rzn1m445a0bsk4kp57nggrpnyahs"; depends=[cli data_table doParallel dplyr foreach ggplot2 glmnet rpart xgboost]; }; - credsubs = derive2 { name="credsubs"; version="1.0.1"; sha256="0n3684fxknvvs57g2vjqykgdjfbpl6242nd23sm9nv2fn57q8k2c"; depends=[]; }; - credule = derive2 { name="credule"; version="0.1.3"; sha256="1vciqkxkf93z067plipvhbks9k9sfqink5rhifzbnwc2c5gxp5mx"; depends=[]; }; - cregg = derive2 { name="cregg"; version="0.3.0"; sha256="08dhn4i5i27zw3ayqp7lkw5z8dzckv8fhflpvz0mphax34pm3z72"; depends=[ggplot2 ggstance lmtest sandwich scales survey]; }; - crfsuite = derive2 { name="crfsuite"; version="0.3"; sha256="10mify8y1f6iwfckfrhhhw6j01p1cd9bq5xwcyz121wkfhnny6rx"; depends=[data_table Rcpp]; }; + credentials = derive2 { name="credentials"; version="1.3.0"; sha256="1w9zj34xdwz9bszsvhv2cbgq96y5sgxbh7ndn31pgfcpzlkfq6f1"; depends=[askpass curl jsonlite openssl sys]; }; + creditmodel = derive2 { name="creditmodel"; version="1.2.4"; sha256="0qp1z8bmr6pa2zsl28p5587y0kljadqsq9camkiplwg3rp4sg0ip"; depends=[cli data_table doParallel dplyr foreach ggplot2 glmnet rpart xgboost]; }; + credsubs = derive2 { name="credsubs"; version="1.1.0"; sha256="0zbn6ifx48cf5b54lpp560vvvhxsa23xl815yvwi8n5xpy1ls13h"; depends=[]; }; + credule = derive2 { name="credule"; version="0.1.4"; sha256="0kwjjkavch21grx845kdcansaj0g407v7z3wmhy4whra9ic12y76"; depends=[]; }; + cregg = derive2 { name="cregg"; version="0.4.0"; sha256="1a34jhdk4r9ywsrc5dc8wq5am3059cli60f6n2n8j04ls13fvlkd"; depends=[ggplot2 ggstance lmtest sandwich scales survey]; }; + crfsuite = derive2 { name="crfsuite"; version="0.3.2"; sha256="049hd6rh32315lhn5sjylx8k33r95ar04l3j7fs92cw6z16vva6n"; depends=[data_table Rcpp]; }; cricketr = derive2 { name="cricketr"; version="0.0.23"; sha256="0daxw2rdx4j1b4h557zhqlbbqbzdai5vzy3fal4mp6hgv350d5ks"; depends=[dplyr forecast ggplot2 httr lubridate plotrix scatterplot3d XML]; }; crimCV = derive2 { name="crimCV"; version="0.9.6"; sha256="14ckk88i7jk8a7kl51d7qfdis44jng6zz9zd72cdp80a57dvrvzq"; depends=[]; }; crimedata = derive2 { name="crimedata"; version="0.2.0"; sha256="073zlk9b4saz72d33z73mc9qzfk49bxwjhph6zbw27nl38k74j7d"; depends=[digest dplyr httr magrittr purrr readr sf stringr tibble]; }; crimelinkage = derive2 { name="crimelinkage"; version="0.0.4"; sha256="1zzk50kyccvnp51vzp28c9yi23hsp25arrgdn88lwfwa0m43rlar"; depends=[geosphere igraph]; }; crisp = derive2 { name="crisp"; version="1.0.0"; sha256="1gs8jnd9y9pd55w6kwv9mvmg3wd8hjiw3lwx7k242pxccsxklfxq"; depends=[MASS Matrix]; }; + crispRdesignR = derive2 { name="crispRdesignR"; version="1.1.5"; sha256="1q2717xnmgq3937skwg8gvj7g4zdld9jyvckmih2b0aazrdhxr9p"; depends=[BiocGenerics Biostrings DT gbm GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors shiny stringr vtreat]; }; crmPack = derive2 { name="crmPack"; version="1.0.0"; sha256="11zy1ci9d0zjbmc0gws9j9qrnfcqvky1ws9p41wjn0zifcckc5gi"; depends=[GenSA ggplot2 gridExtra MASS mvtnorm rjags]; }; crmReg = derive2 { name="crmReg"; version="1.0.1"; sha256="1i3i4pd1ff7cmyd268p5kmncrk0lrq4q4cjhkhxbp2pah041q4wk"; depends=[FNN ggplot2 gplots pcaPP plyr robustbase rrcov]; }; - crminer = derive2 { name="crminer"; version="0.3.2"; sha256="1zq689dk13z0sjp8awjj8jqiw2vkdw70fpyadyis0yfqxyvnzcv5"; depends=[crul hoardr jsonlite pdftools xml2]; }; + crminer = derive2 { name="crminer"; version="0.4.0"; sha256="0yaaj6fxx7rhzcgr6l220qc0n3lf1zlw98m3liq7qw0bcwpnpcrg"; depends=[crul hoardr jsonlite pdftools xml2]; }; crmn = derive2 { name="crmn"; version="0.0.21"; sha256="0wp99fsw7y859gp1x22f77r9rv1m0xspbzhzgshzf7hi86xb57k5"; depends=[Biobase pcaMethods]; }; crn = derive2 { name="crn"; version="1.1"; sha256="1fw0cwx478bs6hxidisykz444jj5g136zld1i8cv859lf44fvx2d"; depends=[chron RCurl]; }; - crochet = derive2 { name="crochet"; version="2.2.0"; sha256="1cbv79nyycxk6f8ldcsnn2pvgxqlnrj0qs19nhafnq2clxy863k6"; depends=[]; }; + crochet = derive2 { name="crochet"; version="2.3.0"; sha256="0zvjaf6cv0nrjb4l4llkr0mmgha7ig31p4ri2rlnqyjlxi5l8hyq"; depends=[]; }; cromwellDashboard = derive2 { name="cromwellDashboard"; version="0.5.1"; sha256="0d57c1wdd1ds9fr7p256la63qbv8mirljgrvl1k8fp5gcnkps5wb"; depends=[dplyr DT httr shiny shinydashboard stringr]; }; cronR = derive2 { name="cronR"; version="0.4.0"; sha256="0ydlwhlzb57vbr8ya6hdsw2mhsjkb01jspn0jw081anrxfy5m2jw"; depends=[digest]; }; crone = derive2 { name="crone"; version="0.1.1"; sha256="03qznxml940rl3kfxy4jkg9nsx9ss0gf2ck0ry000xglw6rm2s42"; depends=[]; }; @@ -6540,9 +6741,8 @@ in with self; { crosswalkr = derive2 { name="crosswalkr"; version="0.2.6"; sha256="1rxd6vy7vdrawmg7zkydl1f2wwklnzgh9dsnxbg966xrr3l9x1n9"; depends=[haven labelled readr readxl tibble]; }; crossword_r = derive2 { name="crossword.r"; version="0.3.6"; sha256="1s31613s4qxxspka9bhgq3rq8xraf48mwfv6phvz6v06gijh64lr"; depends=[dplyr jsonlite magrittr R6 r6extended stringr]; }; crov = derive2 { name="crov"; version="0.2.0"; sha256="1i3a5nagzinsla6p3wjyj3x12gyfqs6vapaqxgr3dh6m727jw5i5"; depends=[gtools VGAM]; }; - crplyr = derive2 { name="crplyr"; version="0.3.4"; sha256="1vpvp11xrlqq7qinndfda6r9dqfqin9gg75hx4y8sh3b9ar2zywd"; depends=[crunch dplyr ggplot2 lazyeval lifecycle purrr rlang scales stringr tibble tidyselect viridisLite]; }; - crqa = derive2 { name="crqa"; version="1.0.9"; sha256="1k6jgkmgbjab78dynng1hlxdbnqrpwmiiw54rgyfhx6v3lcir75d"; depends=[fields Matrix plot3D pracma tseriesChaos]; }; - crqanlp = derive2 { name="crqanlp"; version="0.3"; sha256="1ndd5k44w232x6k564r84lyahljgcnldfwgih3iiar3il94drbdg"; depends=[corpus crqa gutenbergr RCurl tm]; }; + crplyr = derive2 { name="crplyr"; version="0.3.6"; sha256="0np4wy1wwkbzn2rq9mpirxzp5idrm2813mmqhflywa5wwlbckwy8"; depends=[crunch dplyr ggplot2 lazyeval lifecycle purrr rlang scales stringr tibble tidyselect viridisLite]; }; + crqa = derive2 { name="crqa"; version="2.0"; sha256="1iivknva8xfcjhm43468ndli16gqwh13zm2apqp7vqb2xp3mrgw6"; depends=[gplots Matrix plot3D pracma rdist tseriesChaos]; }; crrSC = derive2 { name="crrSC"; version="1.1"; sha256="171cw56q2yv1vb4qd0va75i2q89jcw1126q8pcbv0235g7p2a86z"; depends=[survival]; }; crrp = derive2 { name="crrp"; version="1.0"; sha256="1fq54jr6avrli91a4z1hp5img4kghyw1yvjr5xyccsanf9i35x8r"; depends=[cmprsk Matrix survival]; }; crrstep = derive2 { name="crrstep"; version="2015-2.1"; sha256="03vd97prws9gxc7iv3jfzffvlrzhjh0g6kyvclrf87gdnwifyn1z"; depends=[cmprsk]; }; @@ -6554,46 +6754,50 @@ in with self; { crso = derive2 { name="crso"; version="0.1.1"; sha256="1r10vz8z5y52a5v5phw22fhqwv9p7g66xfsx0906bcx74dn3f2b3"; depends=[foreach]; }; crsra = derive2 { name="crsra"; version="0.2.3"; sha256="1rkqm88zmvp9gw442cby6qpvfw4pfw65wz0gyl2h37w87c3wwvrw"; depends=[digest dplyr knitr purrr rcorpora readr tibble tidytext]; }; crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; }; - crul = derive2 { name="crul"; version="0.9.0"; sha256="1h1iyp625x2fx22dai9y0pmg64q65p9iiilkkd0qlr1ir9ljrd57"; depends=[curl httpcode jsonlite mime R6 urltools]; }; - crunch = derive2 { name="crunch"; version="1.26.3"; sha256="1hnzx9kc0h1x9pjpq9vmdk79vxqwwgh1ncskj9zvmjdmbaj6vyj3"; depends=[crayon curl httpcache httr jsonlite]; }; - crunchy = derive2 { name="crunchy"; version="0.3.1"; sha256="1qvwzym2hj61zjlm7j34j8jl5kfpkpx35xfjjyl5y35a5y50sz8g"; depends=[crunch httpcache miniUI rstudioapi shiny]; }; + crul = derive2 { name="crul"; version="1.0.0"; sha256="09qhvcn67f7sv48avj9m5a06yzckz56qsss9m062v6zqdh7m1pia"; depends=[curl httpcode jsonlite mime R6 urltools]; }; + crunch = derive2 { name="crunch"; version="1.27.0"; sha256="0r78nncr4pd6gir4pwxb4vwkw7i7s75fk8628xm0qy0lv9qhhi7n"; depends=[crayon curl httpcache httr jsonlite]; }; + crunchy = derive2 { name="crunchy"; version="0.3.2"; sha256="1igrfjrvp60hxcsjf1hzfsnbm7ji478p2zfp8nzqi0ybpirrrcz3"; depends=[crunch httpcache miniUI rstudioapi shiny]; }; cruts = derive2 { name="cruts"; version="1.1"; sha256="1ih6h9qk4yflzars00d61smjqj7s4bfvc2ikp6vlki9f6k012xcx"; depends=[lubridate ncdf4 raster sp stringr]; }; cryst = derive2 { name="cryst"; version="0.1.0"; sha256="04da19dy3mkngd3ma44cd8cdkb5acjy9lbhfipa9flp339j1pp57"; depends=[flux pracma]; }; csSAM = derive2 { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; }; + csa = derive2 { name="csa"; version="0.7.0"; sha256="0cmabcvfxfplnzx7mdsfas3jhgz44y86411amaphm75zmv8khcif"; depends=[data_table doParallel foreach ggplot2 ggpubr Lmoments moments raster reshape2 scales]; }; csabounds = derive2 { name="csabounds"; version="1.0.0"; sha256="15l7i15w5jk4h3148dlk8v2i4awns5vxvv6m59qcv0hzns6jhx9j"; depends=[BMisc ggplot2 pbapply progress qte]; }; csampling = derive2 { name="csampling"; version="1.2-2.1"; sha256="0kqx7j96yafsqi9cz551fqpwkbcabxl8zpwa2jms862z41xbgsv3"; depends=[marg statmod survival]; }; cshapes = derive2 { name="cshapes"; version="0.6"; sha256="0mp6grkibmqk4k1yi4w2sglpp9ari5cfw4iip49a0z58qa98npw7"; depends=[maptools plyr sp]; }; csn = derive2 { name="csn"; version="1.1.3"; sha256="102w1qh9hgz4j9lh5hnbw1z3b7p034si73q4pkk564a2mhzlksw4"; depends=[mvtnorm]; }; - csodata = derive2 { name="csodata"; version="1.0.1.1"; sha256="1aldw10cjqz9563v5d4i1m4jb7pfimada3sdhwxkzsqqylvh6chg"; depends=[dplyr httr jsonlite R_cache reshape2 rjstat sf]; }; + csodata = derive2 { name="csodata"; version="1.0.2"; sha256="0xwc9dn6zvq09z78x595kpbch985n4zpzaccl1wpdlr2pydqfmz2"; depends=[dplyr httr jsonlite R_cache reshape2 rjstat sf]; }; csp = derive2 { name="csp"; version="0.1.0"; sha256="1pc5mcn9difpp4cmfb0a8pqhbpkfakxjkbr7bpqmfiwcfk8rzr1h"; depends=[]; }; + cspec = derive2 { name="cspec"; version="0.1.2"; sha256="049vynbffxyd5zwxwyz1jv05zgq7zrx1ypzv5j62ph64gl42m13p"; depends=[]; }; csrplus = derive2 { name="csrplus"; version="1.03-0"; sha256="0kljndmiwblsvvdnxfywida9k0dmdwjq63d934l5yl6z7k4zd0xa"; depends=[sp]; }; cssTools = derive2 { name="cssTools"; version="1.0"; sha256="1p8c21c1hilmd9ibqyz493fy1x95hb2pidybsyicch53gkb542br"; depends=[sna]; }; cstab = derive2 { name="cstab"; version="0.2-2"; sha256="1lr401fvi88f4jv8jh4brx95ymncfw8clripz1r6a46inj80nj4j"; depends=[cluster fastcluster Rcpp]; }; cstar = derive2 { name="cstar"; version="1.0"; sha256="1zws4cq5d37hqdxdk86g85p2wwihbqnkdsg48vx66sgffsf1fgxd"; depends=[]; }; - csv = derive2 { name="csv"; version="0.5.5"; sha256="1i5apqdljr201jqd3r7mdlxczwfj9kz5b6k2myjalisgrgwgy642"; depends=[]; }; + csv = derive2 { name="csv"; version="0.5.9"; sha256="1x2z1blb8rwnhl8nvx9y0c1qqca9402xpqc2wkbkz47lppgmvzfw"; depends=[data_table stringi]; }; csvread = derive2 { name="csvread"; version="1.2.1"; sha256="1r9jvf7nbkxgl6dycdnb89yh39vacrzy8z04g8qz225rklg5b288"; depends=[]; }; csvy = derive2 { name="csvy"; version="0.3.0"; sha256="0id015szw1c63vd1h0515jsqdhyn32sxpxm89f3sb1qkgq3yynmy"; depends=[data_table jsonlite yaml]; }; ctDNAtools = derive2 { name="ctDNAtools"; version="0.4.0"; sha256="0apdz3dv6snlshiq314clkpqycppd3mmyq4skyd1bdrbycnm5s96"; depends=[assertthat BiocGenerics Biostrings BSgenome dplyr ellipsis furrr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr purrr rlang Rsamtools tidyr VariantAnnotation]; }; + ctgdist = derive2 { name="ctgdist"; version="0.1.0"; sha256="1m3ryppfvd984n5xfphjqhi9i1sigl17v897mqaichj21dzaq62f"; depends=[mirt]; }; ctgt = derive2 { name="ctgt"; version="1.0"; sha256="0iznqskyi80xs8xn2hrrlal9qz9cwq6m9ml6wfwyynbzgn7vmvvh"; depends=[BH Rcpp]; }; cthreshER = derive2 { name="cthreshER"; version="1.1.0"; sha256="18b66d08dq8pvnixmm4ir4r800b37z5yillaa88l317mdilbci9s"; depends=[Matrix]; }; ctl = derive2 { name="ctl"; version="1.0.0-4"; sha256="027cij4vdsq3xhi38izzn07q6xwja7n8v95l7kk1pp92y9qkvqv3"; depends=[MASS qtl]; }; ctmcd = derive2 { name="ctmcd"; version="1.4.1"; sha256="01nflgdyb70kh4f8bnxpavr31fz4fh02kgz2nlx3zzblnm2idbcx"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; ctmcmove = derive2 { name="ctmcmove"; version="1.2.9"; sha256="1pxyxbbhfa8arqfb7qw10ya1b8hy9ylqbqqzys6d9dsixvdk98h0"; depends=[fda gdistance Matrix raster sp]; }; ctmle = derive2 { name="ctmle"; version="0.1.2"; sha256="0qc1ji8fjpr88dn6mrpijfcx1ij4zkrxsbcw405hxal7rli0gyp3"; depends=[glmnet SuperLearner tmle]; }; - ctmm = derive2 { name="ctmm"; version="0.5.9"; sha256="0in7dc83gbqpf6gcz0nz23a2fq5xwjx8qkgy0bgsnsrwmx32b0ar"; depends=[data_table digest expm fasttime Gmedian gsl manipulate MASS numDeriv pbivnorm pracma raster rgdal shape sp]; }; + ctmm = derive2 { name="ctmm"; version="0.5.10"; sha256="0rxcq3nb3b5p21wjbcranxjj4zas31lm293lv6bb26av2mlhc8xj"; depends=[data_table digest expm fasttime Gmedian gsl manipulate MASS numDeriv pbivnorm pracma raster rgdal shape sp]; }; ctqr = derive2 { name="ctqr"; version="1.1"; sha256="1iv6mms7p0xca91mpj61cj8kxv2bwqrpvwdsbx2lk6hgys8g70y2"; depends=[pch survival]; }; - ctrdata = derive2 { name="ctrdata"; version="1.2"; sha256="146nb5sv6mj43kqs8iz58nzyx4xrrk5khay2hjjpfrh1g076bw8k"; depends=[clipr curl httr jsonlite nodbi rvest xml2]; }; + ctrdata = derive2 { name="ctrdata"; version="1.3.1"; sha256="06xayav8mk5v0y42isg84pqb0d2w204p7rqz45vhsfcqdf918nng"; depends=[clipr curl httr jsonlite nodbi rvest xml2]; }; ctrlGene = derive2 { name="ctrlGene"; version="1.0.1"; sha256="0x7j11v7jj4k1jml6lrnjq79awhrvsm3pig1yxsd337jlfml3ra9"; depends=[psych]; }; - ctsem = derive2 { name="ctsem"; version="3.2.0"; sha256="1dsk74vci4k43b53lz9dwbrcj59f9fr527bls0l83kkas8dsd6m8"; depends=[BH cOde data_table Deriv ggplot2 MASS Matrix mize mvtnorm numDeriv OpenMx pkgbuild plyr quantreg Rcpp RcppEigen rstan rstantools StanHeaders]; }; + ctsem = derive2 { name="ctsem"; version="3.3.8"; sha256="1j0ibld37c34dhpi3gz3d90z0xpakabqf5rxwq5f0nnib6pwghfx"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm pkgbuild plyr Rcpp RcppEigen RcppParallel rstan StanHeaders tibble]; }; + ctsemOMX = derive2 { name="ctsemOMX"; version="1.0.2"; sha256="1ln0ns2ff054m0zak0f6gbpa1q2zq2vpsf0zpd99m4m26ws1gzyw"; depends=[ctsem Matrix OpenMx plyr]; }; ctv = derive2 { name="ctv"; version="0.8-5"; sha256="0kl6z8dbbjgm29q0c5xy6lihjgf5cdihrllm27x0zbcvy8lyl51p"; depends=[]; }; cuRe = derive2 { name="cuRe"; version="1.0.1"; sha256="0vw2iv9inz8md7lz6f1p456wxjc07kap1mvqf58hixqxbrb23dgi"; depends=[date numDeriv relsurv rstpm2 statmod survival]; }; - cubature = derive2 { name="cubature"; version="2.0.4"; sha256="0jpyq8j7x06dpiz29w48av879ygldzgls9z810192hsymkmfaz6r"; depends=[Rcpp]; }; + cubature = derive2 { name="cubature"; version="2.0.4.1"; sha256="006la36gxdikvmdnq4ny7ik7r30id4z3b3fqsl57dpqwkpsbsgrq"; depends=[Rcpp]; }; cubelyr = derive2 { name="cubelyr"; version="1.0.0"; sha256="0h9s5j9q05bdzdv7dbghzfbhqf96kyxyrxx1mqf8phzc77w4yh25"; depends=[dplyr glue pillar purrr rlang tibble tidyselect]; }; cubeview = derive2 { name="cubeview"; version="0.2.0"; sha256="1352hi2j9x9rx4iy3xvsca86nsh39x1vnymd17f5qc8c3plfm8db"; depends=[base64enc htmltools htmlwidgets lattice raster stars viridisLite]; }; cubfits = derive2 { name="cubfits"; version="0.1-3"; sha256="0i2iybm9vpyqnahzka66yms1namdd36bz1i1yjy74qsc1h995rga"; depends=[coda foreach]; }; cubing = derive2 { name="cubing"; version="1.0-5"; sha256="1q23fplvklaaldicqic0zpnh301m08zb9k21l47zj47g9m9pj4bc"; depends=[rgl]; }; cultevo = derive2 { name="cultevo"; version="1.0.2"; sha256="0rmncp4mrdpf3izhhqn9406i36j3d3d7i8cglip04lkfbypl9jvy"; depends=[combinat Hmisc pspearman stringi]; }; - cumSeg = derive2 { name="cumSeg"; version="1.2"; sha256="0ix8g3w04n799pppyhyd365bdx9cwrgn7k7qljs1fdiq8s135wzk"; depends=[lars]; }; + cumSeg = derive2 { name="cumSeg"; version="1.3"; sha256="0n1hp0abnd6zn72fkgkj9k875vivn5kr3q76sjy6q6va7x24j6sg"; depends=[lars]; }; cumplyr = derive2 { name="cumplyr"; version="0.1-1"; sha256="07sz1wryl3kxbk67qyvnkrkdrp4virlsaia0y6rf9bqdw7rc6vi2"; depends=[]; }; cumstats = derive2 { name="cumstats"; version="1.0"; sha256="119w751z9dg6pjyk389pbl8ab8pirf9sqndi4nxi89ix2bby4xz8"; depends=[]; }; cumulocityr = derive2 { name="cumulocityr"; version="0.1.0"; sha256="0ybvh5args3s1f3nra58bnfwgrlrdpw40by68az84s90v88bbz2q"; depends=[httr jsonlite]; }; @@ -6611,7 +6815,7 @@ in with self; { cusum = derive2 { name="cusum"; version="0.4.1"; sha256="0vjq3slkjdgls41xm637xkrg8jhv6y75xiyfcgpwrp32ixmakpcd"; depends=[checkmate data_table Rcpp]; }; cutoff = derive2 { name="cutoff"; version="1.3"; sha256="0anrvmlvcxah620il3fkq6ldp7hx4nwdnzcpmfc5mhlsry0lp178"; depends=[do ROCit set survival]; }; cutoffR = derive2 { name="cutoffR"; version="1.0"; sha256="1801jylmpp4msyf07rhg4153kky1zvi4v0kkjb9d51dc7zkhh531"; depends=[ggplot2 reshape2]; }; - cutpointr = derive2 { name="cutpointr"; version="1.0.2"; sha256="0jlh7d1nj9w1rw04sg89a81qxm6dfmsdqq37y1b10fllvhnc93fq"; depends=[dplyr foreach ggplot2 gridExtra purrr Rcpp rlang tibble tidyr]; }; + cutpointr = derive2 { name="cutpointr"; version="1.0.32"; sha256="1xb5dwbhax0ijmxpzzkzaa8s2hndgln4820lij6fm251vfp5qy0s"; depends=[dplyr foreach ggplot2 gridExtra purrr Rcpp rlang tibble tidyr]; }; cuttlefish_model = derive2 { name="cuttlefish.model"; version="1.0"; sha256="1rmkfyfd1323g2ymd5gi1aksp160cwy5ha5cjqh5r6fzd8hhqjxs"; depends=[]; }; cvAUC = derive2 { name="cvAUC"; version="1.1.0"; sha256="13bk97l5nn97h85iz93zxazhr63n21nwyrpnl856as9qp59yvn64"; depends=[data_table ROCR]; }; cvGEE = derive2 { name="cvGEE"; version="0.3-0"; sha256="085qjm520l2441nakfxy851s6bfy5832b5fy54z5fp4xr1jn6snm"; depends=[]; }; @@ -6622,11 +6826,11 @@ in with self; { cvequality = derive2 { name="cvequality"; version="0.2.0"; sha256="1im839vzfqylphp2vr20avnzkyl02n88fngbs63d4ik7c72d9992"; depends=[]; }; cvmdisc = derive2 { name="cvmdisc"; version="0.1.0"; sha256="19b9kxqgbk1d631l3jph87pzhk4zf3xd5q5j2xsrbqz8zmm96sn9"; depends=[CompQuadForm]; }; cvmgof = derive2 { name="cvmgof"; version="1.0.0"; sha256="0rnd7icqjprhbpmn383ah4fi5nz0hmg88fa612fmivkvnpn79v6j"; depends=[lattice]; }; - cvms = derive2 { name="cvms"; version="1.0.1"; sha256="0z7vp323vlz53icpksgl9idnkg5sf3kh6gi2fpkwafrx0h7fqdr7"; depends=[broom checkmate data_table dplyr ggplot2 lifecycle lme4 MuMIn plyr pROC purrr recipes rlang stringr tibble tidyr]; }; + cvms = derive2 { name="cvms"; version="1.0.2"; sha256="1swx67ns0wamh9k2fybk86ywqp4pbg3vqwk2h5jphca2zpnmq5pw"; depends=[broom checkmate data_table dplyr ggplot2 lifecycle lme4 MuMIn plyr pROC purrr recipes rlang stringr tibble tidyr]; }; cvq2 = derive2 { name="cvq2"; version="1.2.0"; sha256="19k95xg2y3wd4mx3wvbrc1invybd446g13vsp3dv05nw2kx4f6w8"; depends=[]; }; cvxbiclustr = derive2 { name="cvxbiclustr"; version="0.0.1"; sha256="00k75zy8v6qd5fg0h258i5z8ljjkfgkxz45cspysl1ap89d5n7df"; depends=[igraph Matrix]; }; cvxclustr = derive2 { name="cvxclustr"; version="1.1.1"; sha256="0idmx4wgz4d0b1xzmlq5bsk2f2q38lpf9c117hg97xsfndzn7vqj"; depends=[igraph Matrix]; }; - cwbtools = derive2 { name="cwbtools"; version="0.2.0"; sha256="1f60zlj75a1fxvw92j8gg707lw4p23c7qg9zzk1s9ph4d42g63sb"; depends=[curl data_table jsonlite pbapply R6 RcppCWB RCurl rstudioapi stringi usethis xml2]; }; + cwbtools = derive2 { name="cwbtools"; version="0.3.1"; sha256="1q8mim1k5fbf23d506wg82f9i578jy99kzkhvydibb5apri77d7n"; depends=[cli curl data_table jsonlite pbapply R6 RcppCWB RCurl rstudioapi stringi xml2 zen4R]; }; cwhmisc = derive2 { name="cwhmisc"; version="6.6"; sha256="1pf365g4f51cfrhlff9mqw2ddvkps0abax17zcn3vw1ba2djalnp"; depends=[lattice]; }; cwm = derive2 { name="cwm"; version="0.0.3"; sha256="1ln2l12whjhc2gx38hkf3xx26w5vz7m377kv67irh6rrywqqsyxn"; depends=[MASS matlab permute]; }; cxhull = derive2 { name="cxhull"; version="0.2.0"; sha256="1m03ym83ghgmb0j14aihfj6divmnr13f5s9jwknicjsxz3p3divk"; depends=[]; }; @@ -6643,34 +6847,34 @@ in with self; { cytoDiv = derive2 { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; }; cytofan = derive2 { name="cytofan"; version="0.1.0"; sha256="0gqs98mnwiawnyfb9hs5nlin8d1fj64bszn4b40gs8ajyh36r9pp"; depends=[ggplot2 RColorBrewer]; }; cytometree = derive2 { name="cytometree"; version="2.0.2"; sha256="18g7av73lmnyga1kk24bf8jy599zn9n6qhr13mxsqgi0zdinicfa"; depends=[cowplot ggplot2 GoFKernel igraph mclust Rcpp RcppArmadillo]; }; - cytominer = derive2 { name="cytominer"; version="0.2.1"; sha256="0snifz15ijn5bfl3ppfqjp7ac68hsx0rzxlcnxj3285d10p0wljq"; depends=[caret doParallel dplyr foreach futile_logger magrittr Matrix purrr rlang tibble tidyr]; }; + cytominer = derive2 { name="cytominer"; version="0.2.2"; sha256="1n9yimjhdziv1vzjyni6ssi38nxcnfr5jpmzgxcn6vysffh5s9pz"; depends=[caret doParallel dplyr foreach futile_logger magrittr Matrix purrr rlang tibble tidyr]; }; + czechrates = derive2 { name="czechrates"; version="0.1.8"; sha256="00zp6kwi6mgyr4dchkc8f7nz5hvyin7hcjbda8v94h220win1zxz"; depends=[curl dplyr httr magrittr readr tibble]; }; czso = derive2 { name="czso"; version="0.2.3"; sha256="1gaflfi1sq49vjaah8mnbydvyqwwkl1ca2ay399dn9gw1kjcq0fd"; depends=[curl dplyr httr jsonlite lifecycle magrittr readr rlang stringi stringr tibble usethis]; }; d3Network = derive2 { name="d3Network"; version="0.5.2.1"; sha256="1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw"; depends=[plyr rjson whisker]; }; d3Tree = derive2 { name="d3Tree"; version="0.2.0"; sha256="0xjr36hdd00dy8s8z1a1s44dn2wg0nm6yqc1rri2l0dqrbh4nrbn"; depends=[dplyr htmlwidgets magrittr plyr stringr]; }; - d3heatmap = derive2 { name="d3heatmap"; version="0.6.1.2"; sha256="1ici8j0wzzklhmw94qlxm292qs562vc32wq8mnjsas2n1p35vkmk"; depends=[base64enc dendextend htmlwidgets png scales]; }; d3plus = derive2 { name="d3plus"; version="0.1.0"; sha256="0kadz83pals03n0v3zqhmhf6visigk52yn58xckhb57fid4xzj5w"; depends=[htmlwidgets magrittr]; }; - d3r = derive2 { name="d3r"; version="0.8.7"; sha256="0xl3im76lp7pd5lhp8jfyqdm4j4zvjrx5a5fl81xv2cf7x3n4f2a"; depends=[dplyr htmltools tidyr]; }; + d3r = derive2 { name="d3r"; version="0.9.0"; sha256="0vd1qk8yr18xdfkv5ybhqvf0mmccpi721wqa7c881nzm9nnlzc4y"; depends=[dplyr htmltools rlang tidyr]; }; dBlockmodeling = derive2 { name="dBlockmodeling"; version="0.2.0"; sha256="0c1hvawb9gw6vckims3g8kzn2c4f0as5x1vw39sdvkwc92xy26lv"; depends=[]; }; dChipIO = derive2 { name="dChipIO"; version="0.1.5"; sha256="1xrafw5h071d8rfqaic3gifc80jpiddjz5x6l2cr8kgjvph60gqh"; depends=[]; }; dCovTS = derive2 { name="dCovTS"; version="1.1"; sha256="1pd50nfmfcqpi8zj20ngl0hc23qa4rabqhc1xci3ivyhs0valhsl"; depends=[doParallel energy foreach]; }; dGAselID = derive2 { name="dGAselID"; version="1.2"; sha256="0da7fi872i3ycb3j5v4isr4x2z39a68w4mdq859zslmqhiqd43b6"; depends=[ALL Biobase genefilter MLInterfaces]; }; dHSIC = derive2 { name="dHSIC"; version="2.1"; sha256="1c1xz1f1fp937w4rlylvqv3ii0p9dafvmn4fqq8rzxhcg5rn9j4l"; depends=[Rcpp]; }; - dLagM = derive2 { name="dLagM"; version="1.1.2"; sha256="0mn90jl9648q9r8mw6h0jsjrjhiqylry55f7zi1rjbr4p838djn9"; depends=[AER dynlm formula_tools lmtest MASS nardl plyr roll strucchange wavethresh]; }; + dLagM = derive2 { name="dLagM"; version="1.1.4"; sha256="1qc8l6971khz76n9i3wvn6j9mkd9lp35qvnxw1chhprbl1ps4h4w"; depends=[AER dynlm formula_tools lmtest MASS nardl plyr roll sandwich strucchange wavethresh]; }; dMod = derive2 { name="dMod"; version="1.0.1"; sha256="1xw52kliyiv9vrw0m9y7baqdcpqz4706625if8b63nfr70i77a9p"; depends=[cOde deSolve doParallel dplyr foreach ggplot2 plyr rootSolve stringr]; }; dSVA = derive2 { name="dSVA"; version="1.0"; sha256="0vy0flyg82x0n9vw6jf9f76qy84sp0wnis91faj37ac5hdv3pvsb"; depends=[sva]; }; - daarem = derive2 { name="daarem"; version="0.4.1"; sha256="1krixphwjh4wp38in7ypwc4y4ncdrryhsnjnn1y48fm2jgc8zvjl"; depends=[]; }; - dabestr = derive2 { name="dabestr"; version="0.2.5"; sha256="0kaxqlagp7ckq3h67l608vzfq98yrd47skwb2pzcf3dg3q5gsjz6"; depends=[boot cowplot dplyr ellipsis forcats ggbeeswarm ggforce ggplot2 magrittr plyr RColorBrewer rlang simpleboot stringr tibble tidyr]; }; - dad = derive2 { name="dad"; version="3.4.0"; sha256="0jgirdnp3gaychnjg4mp4p1mdn31hlngs1znzvlxhrd0cqyi4ccd"; depends=[DescTools e1071 ggplot2]; }; - dae = derive2 { name="dae"; version="3.1-23"; sha256="1qpsnyjq2imci45hn0c00cwgvhdrcbrfrvwmjm87k8vb3g0wqhgr"; depends=[ggplot2 plyr]; }; - daewr = derive2 { name="daewr"; version="1.2-3"; sha256="0ic7lpydsdiilqsbvc5yskrrl6a2l6kmgiz1idz0ic0klyk6rnig"; depends=[FrF2 lattice stringi]; }; + daarem = derive2 { name="daarem"; version="0.5"; sha256="167sqp7fnyhwgk7crl3b6m6i8mpn3hmsaqzi4v5ggi48fg19bis7"; depends=[]; }; + dabestr = derive2 { name="dabestr"; version="0.3.0"; sha256="0i4k8h46cw5ds1cammxxli8kpc82ill81xw3izi33lja7wl9vmnw"; depends=[boot cowplot dplyr effsize ellipsis forcats ggbeeswarm ggforce ggplot2 magrittr plyr RColorBrewer rlang simpleboot stringr tibble tidyr]; }; + dad = derive2 { name="dad"; version="3.4.3"; sha256="0gcz1lbrjs6pjjlbxmfpq45drlqkghdqfswl2kcnpiqybl79wzb3"; depends=[DescTools e1071 ggplot2]; }; + dae = derive2 { name="dae"; version="3.1-27"; sha256="14q3cxhcz0zqjdkas0dl71k2bp5qwvb60gha47s78hdr38r46kml"; depends=[ggplot2 plyr]; }; + daewr = derive2 { name="daewr"; version="1.2-5"; sha256="0cfak3kmw8da7rh04d9qkqypxshj6wanac3318jbc5gvk0injbvd"; depends=[FrF2 lattice stringi]; }; daff = derive2 { name="daff"; version="0.3.5"; sha256="00zcdf215m7p3xm9yv571v09znhdqacxg69hb5b5j749mp4wdsyj"; depends=[jsonlite V8]; }; dafs = derive2 { name="dafs"; version="1.0-37"; sha256="1vdi57qaqdn39yf1ih2gzry02l289q4bffpksglsl4shs6bg2206"; depends=[s20x]; }; dagR = derive2 { name="dagR"; version="1.1.3"; sha256="13jyhwjvvrjjja18rqzfdcw9ck90qm5yjwd25nygxgdf1894y03b"; depends=[]; }; - dagitty = derive2 { name="dagitty"; version="0.2-2"; sha256="11jpjr2l89glr9962mbhy4dfbdjs80nf603w90xx16s4qcmcsghc"; depends=[boot jsonlite MASS V8]; }; + dagitty = derive2 { name="dagitty"; version="0.3-0"; sha256="0b1y81f019lhib2bsbs0rn0i7y0ah8ablsx73rynprrpxrp0fgnk"; depends=[boot jsonlite MASS V8]; }; dalmatian = derive2 { name="dalmatian"; version="0.3.0"; sha256="06j7ampp0hwjqgw2agplfc8mngxnb6g4yv3l08plg35769jxxz7f"; depends=[coda dglm gdata ggmcmc rjags]; }; dam = derive2 { name="dam"; version="0.0.1"; sha256="1b0fi3l8jxgpr9fwvi03giq7wm39msbh0c82ffgkh54a3bbf5blc"; depends=[]; }; damr = derive2 { name="damr"; version="0.3.4"; sha256="19rffdrgx9c03f66qgj1gwp5vra89n3jrrb54i9xl2rxsf28ry3h"; depends=[behavr data_table readr]; }; - dams = derive2 { name="dams"; version="0.2"; sha256="0hf5s8i61r5q4h3s8dfmdl3vkj7v15ha59pjvpjqx3yihsgziqz9"; depends=[RCurl]; }; + dams = derive2 { name="dams"; version="0.3.0"; sha256="1jlx1b4cir1vwq75jnmk0pc6j95syfpi0hlnkx82g7pwfxwrdrib"; depends=[crul fauxpas janitor readxl]; }; dang = derive2 { name="dang"; version="0.0.11"; sha256="14bxzbkrqzs0ic7n4rlaa429lwdgldlcx97h8l7ma6jh8c0fx3qr"; depends=[]; }; dani = derive2 { name="dani"; version="0.1-1"; sha256="0ff0hcb5r8k6m6kv1zhjrpvl7gr1al3q0zlk4yjj89qd2j5byqp8"; depends=[Epi]; }; dann = derive2 { name="dann"; version="0.2.0"; sha256="18c9rx7qg76pnmg2h4zazqq7k0vxgqh70j85cb7cc8lf0qsj6l8i"; depends=[fpc ggplot2 MASS purrr Rcpp RcppArmadillo rlang stringr tibble]; }; @@ -6680,10 +6884,18 @@ in with self; { darksky = derive2 { name="darksky"; version="1.3.0"; sha256="1740cw5qifgvqa0nafd6lmllxi32n1zm45zlify1yn3h1qdcszhb"; depends=[ggplot2 gridExtra gtable httr plyr]; }; dartR = derive2 { name="dartR"; version="1.1.11"; sha256="0k768ppm4iw4fi72dp8f1684kizqp1spfb4cnnqxq1dy6w0qz5i8"; depends=[adegenet ape data_table directlabels dismo doParallel foreach gdistance ggplot2 hierfstat igraph leaflet MASS mmod pca3d pegas plyr PopGenReport qvalue reshape2 rgdal rrBLUP seqinr SNPassoc SNPRelate sp StAMPP stringr tidyr vegan]; }; darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; }; + dash = derive2 { name="dash"; version="0.5.0"; sha256="1hzyxplq0fclyr8ahh0mhrx1ibf49y43889p8fi8kmvg0x24i1iz"; depends=[assertthat base64enc brotli crayon dashCoreComponents dashHtmlComponents dashTable digest fiery htmltools jsonlite mime plotly R6 reqres routr]; }; + dashCoreComponents = derive2 { name="dashCoreComponents"; version="1.10.0"; sha256="11jrlls6k6qlvi81741ga908aw22m05fhhr9jpzli982s611jrwl"; depends=[]; }; + dashHtmlComponents = derive2 { name="dashHtmlComponents"; version="1.0.3"; sha256="01zrwjlhwwajk2lnv7is1r6nril83l65pynx856y9mvnm05xkb7m"; depends=[]; }; + dashPivottable = derive2 { name="dashPivottable"; version="0.0.2-1"; sha256="1fv5pnvimf7w1k1lsijh9y2zk4z1z00m6m640jxvqla5i1rqy8cq"; depends=[]; }; + dashTable = derive2 { name="dashTable"; version="4.7.0"; sha256="0iy07dxa90vsp3rfk8ij78j9ajz1mpxywmclxzkfj7axjyydxh5w"; depends=[]; }; dashboard = derive2 { name="dashboard"; version="0.1.0"; sha256="1znqwvz49r47lp6q48qaas0s63wclgybav82a247qvcavzns3kip"; depends=[Rook]; }; - dat = derive2 { name="dat"; version="0.4.0"; sha256="1nw16hsw9b4hpcl5rqrlw6yk9y2h1pd0ra1c7iz82sknkyd5afi6"; depends=[aoos data_table dplyr Formula magrittr progress tibble]; }; - data_table = derive2 { name="data.table"; version="1.12.8"; sha256="1p7rf4v3ysflpgcmy9krkwmcy7z22wb08xm443649waz6lx5z9yk"; depends=[]; }; - data_tree = derive2 { name="data.tree"; version="0.7.11"; sha256="1mm27p3k2qw77wqrx05qs39nazcgpn0af0ahlps4gm62fs9pzddq"; depends=[R6 stringr]; }; + dashboardthemes = derive2 { name="dashboardthemes"; version="1.1.1"; sha256="134xn8xbfg2j32m85dagjp18s1qx5pl6799a015fbc4zvzd9irmh"; depends=[htmltools]; }; + dat = derive2 { name="dat"; version="0.5.0"; sha256="1d3q4bang6pm06rfzh6h947xy3wwqn3l6ri0h4hzklg5pzwpsajd"; depends=[aoos data_table Formula magrittr progress]; }; + data_table = derive2 { name="data.table"; version="1.13.0"; sha256="0wihpg1syjxzsij2fmhwh30vvf2cghw2b2qi79w36qwil2s8w2gn"; depends=[]; }; + data_tree = derive2 { name="data.tree"; version="1.0.0"; sha256="0pizmx2312zsym4m42b97q2184bg3hibvbdrblcga05xln84qrs0"; depends=[R6 stringi]; }; + data360r = derive2 { name="data360r"; version="1.0.8"; sha256="0g3prfaqy7d5fdla4l31cj87vhzi945g22zr7pi2c2whlk4q4n09"; depends=[curl data_table jsonlite reshape2]; }; + dataCompareR = derive2 { name="dataCompareR"; version="0.1.3"; sha256="178293hk21qjczi7hyffhlwn0lxrz2k9nxsy7jykjdbsqalyxwli"; depends=[dplyr knitr markdown stringi]; }; dataMaid = derive2 { name="dataMaid"; version="1.4.0"; sha256="133ipl06sc8iicvkbgjxfs0qia76r2p1qhi693vacgfdbd7cmak5"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; dataMeta = derive2 { name="dataMeta"; version="0.1.1"; sha256="13xxayqxbps07h0xr5b7sb7q30gy5zm7jzzaq4k20fskkjrzhzcm"; depends=[dplyr]; }; dataPreparation = derive2 { name="dataPreparation"; version="0.4.3"; sha256="1fchr68siq6vxz4qzlkrm2p6zld3s8mw7izmyzqffvrlqmrh0bdm"; depends=[data_table lubridate Matrix progress stringr]; }; @@ -6692,11 +6904,10 @@ in with self; { datacheck = derive2 { name="datacheck"; version="1.2.2"; sha256="1i3n5g1b6ix8gpn4c74s7ll1dbrllrzgpb1f3hk449d6p4kmisq6"; depends=[Hmisc shiny stringr]; }; datadigest = derive2 { name="datadigest"; version="1.0.2"; sha256="1v4nwflrgjhwkrdlrjnqyq1spv1jkgxn1kmapml0zrvnvwf0r1a1"; depends=[haven Hmisc htmltools htmlwidgets jsonlite miniUI shiny tibble]; }; datadogr = derive2 { name="datadogr"; version="0.1.2"; sha256="10zbxb9gkymw78ras9y4wrifz7cxh3y630yzjcf9ds2p557vcjzp"; depends=[anytime dplyr glue httr lubridate purrr stringr tibble tidyr]; }; - dataesgobr = derive2 { name="dataesgobr"; version="1.0.0"; sha256="10znkaq45m4bgiyjx4x8s6ilvxlry6h0z54pkg8jgmblrpfazmqb"; depends=[dplyr DT httr jsonlite readODS readr readxl shiny shinycssloaders shinyFiles shinyjs shinythemes stringi stringr yaml]; }; - dataframeexplorer = derive2 { name="dataframeexplorer"; version="0.1.6"; sha256="0sp2323lf3sq7na6z9v1lir46v75c7ssklbkkmjxx43pbw3q4rjy"; depends=[data_table dplyr magrittr openxlsx plyr tibble tidyr]; }; + dataframeexplorer = derive2 { name="dataframeexplorer"; version="0.1.7"; sha256="0zbcaii21pic30x0b2i16qnmb2wh7br6g7jk4czs4mciclxldp4q"; depends=[data_table dplyr magrittr openxlsx plyr stringr tibble tidyr]; }; dataframes2xls = derive2 { name="dataframes2xls"; version="0.4.7"; sha256="10krlv0l5w021z0qd7rj93pzfjjmcjlda4xz4vq470bxbjmn1bss"; depends=[]; }; datafsm = derive2 { name="datafsm"; version="0.2.3"; sha256="18q6s8sz8bm2xlfvhj0x5sagpn363s3k21s428wd0bqzqlppwbmb"; depends=[caret GA Rcpp]; }; - datagovsgR = derive2 { name="datagovsgR"; version="0.3.1"; sha256="03ynpga01yh8xm4p41kq32wvmbh9cf1jp1mbyzzl6ziwgz95n0q8"; depends=[data_table dplyr httr purrr stringr]; }; + datagovsgR = derive2 { name="datagovsgR"; version="0.3.2"; sha256="09bjcdalv7957kjzcv5ssjljgz437lk7bllmsbp49bv2riswh1fy"; depends=[curl data_table dplyr httr purrr stringr]; }; datamap = derive2 { name="datamap"; version="0.1-1"; sha256="0qm4zb9ldg4wz1a7paj5ilr1dhyagq81rk9l2v43hmkv52sssgkv"; depends=[DBI]; }; datamaps = derive2 { name="datamaps"; version="0.0.3"; sha256="00pvns98miq56z3prbb5qg608d5ns9wbp0711x3mmqg0bld1xwmp"; depends=[htmlwidgets magrittr]; }; datamart = derive2 { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[base64 gsubfn markdown RCurl RJSONIO XML]; }; @@ -6704,16 +6915,18 @@ in with self; { dataonderivatives = derive2 { name="dataonderivatives"; version="0.3.1"; sha256="0q1zd1l7l0hmbs1bx469d706rmprjbz2f2dgcnfp9wxfgqpfxkz1"; depends=[assertthat httr lubridate readr tibble]; }; dataone = derive2 { name="dataone"; version="2.1.4"; sha256="19v5c2xbdsz06dcx7xz4jld3dgp98k66cps2hnxpd33wbm8n7x6h"; depends=[base64enc datapack hash httr jsonlite parsedate plyr stringr uuid XML]; }; datapack = derive2 { name="datapack"; version="1.3.2"; sha256="0v9m7fbzi1w5p3arb0ywl4yglyw87civc59ndqsdm8rp84gbvnbl"; depends=[digest hash redland uuid XML]; }; - datapackage_r = derive2 { name="datapackage.r"; version="1.3.0"; sha256="0njvv5g64yp29wz7vdcfqqf0xjzp9pcs79mmll07bm9jfr528rd5"; depends=[config future httr iterators jsonlite jsonvalidate purrr R_utils R6 readr rlist stringr tableschema_r urltools V8]; }; + datapackage_r = derive2 { name="datapackage.r"; version="1.3.1"; sha256="0ch4d77pz5xjyl2ypbz0hjgl63259cnk5py79dc3ksalgxhrx9yj"; depends=[config future httr iterators jsonlite jsonvalidate purrr R_utils R6 readr rlist stringr tableschema_r urltools V8]; }; datapasta = derive2 { name="datapasta"; version="3.1.0"; sha256="0sqv29iv2rv50rbw1601rn8p7gv7rsw00djhl7h1znr0igzi5b82"; depends=[clipr readr rstudioapi]; }; dataresqc = derive2 { name="dataresqc"; version="1.0.3"; sha256="1b04lzb479p95iv7gzb5ds6c48l8kcps857qjy3wqkhr67jhd0dc"; depends=[]; }; datarium = derive2 { name="datarium"; version="0.1.0"; sha256="1v98yxsxhfqlalz5qy3x5axb7fy067vf3y0qg7ngixphmy9qybym"; depends=[]; }; - datarobot = derive2 { name="datarobot"; version="2.17.0"; sha256="1k4idrbc9fgw8afc7cq9fqg189b86h1q0fkpq06k7dc4fl65wyna"; depends=[curl httr jsonlite yaml]; }; + datarobot = derive2 { name="datarobot"; version="2.17.1"; sha256="1kfd4xfpwglh05xj67gi14j1c4fwfcrf4kj0w077wk1vzyvz3n37"; depends=[httr jsonlite yaml]; }; + datasailr = derive2 { name="datasailr"; version="0.8.5"; sha256="083d06gk03kwknanflxr66rbahjna4ycdj8p0n7xcancgikky9sq"; depends=[Rcpp]; }; datasauRus = derive2 { name="datasauRus"; version="0.1.4"; sha256="1w1yhwwrmh95bklacz44wjwynxd8cj3z8b9zvsnzmk18m5a4k0fl"; depends=[]; }; dataseries = derive2 { name="dataseries"; version="0.2.0"; sha256="11wc2p5m8qbdmkpbd21lpwl28a1dpab88c3gqyrhsn0298lpnip4"; depends=[]; }; - datasets_load = derive2 { name="datasets.load"; version="1.2.0"; sha256="0x2m3k4grqizm97p41gjy3zkmhshicndp6cwyncl149yay6x8y5i"; depends=[DT miniUI shiny]; }; + datasets_load = derive2 { name="datasets.load"; version="1.4.0"; sha256="1gs7dvd6r7h3n55b33mdhf0kcvsrddbvl2f3f65k274ygza2j3r7"; depends=[DT miniUI shiny]; }; + datasetsICR = derive2 { name="datasetsICR"; version="1.0"; sha256="1iw8am7y6r6j21rp6r6iw1ri4c2yrgza7aw3ams4xbx6mcz3746y"; depends=[]; }; datastepr = derive2 { name="datastepr"; version="0.0.2"; sha256="039yggdj8jdici7hwmkjwgix45lvwjl7rw5h2rfzsm9xaq6vw1z2"; depends=[dplyr lazyeval magrittr R6 tibble]; }; - datastructures = derive2 { name="datastructures"; version="0.2.8"; sha256="1lf48c77z4br1sv8kdbxadn30v5ygn9shjgsf8g37rci7nngpx1k"; depends=[BH purrr Rcpp]; }; + datastructures = derive2 { name="datastructures"; version="0.2.9"; sha256="0prw24iy1af02g1nzw588dv085bdnl6pzvizpxspmwzj6vrfbaav"; depends=[BH purrr Rcpp]; }; datasus = derive2 { name="datasus"; version="0.4.1.1"; sha256="1vcyn0iia71c58959d3wcdqlh6336p3lsxbvwsj0fd9sll0a605s"; depends=[dplyr httr magrittr RCurl readr rvest stringi stringr xml2]; }; dataverse = derive2 { name="dataverse"; version="0.2.0"; sha256="0lyga8rdsir2yr1n9nr10iiaf6a7dxp1nb04bx8mq8ljrvpkgr8n"; depends=[httr jsonlite xml2]; }; date = derive2 { name="date"; version="1.2-39"; sha256="0mwp1619rxqyyyyxk224fh0x6g4rgyvr97q0kj076cxp71b97cdm"; depends=[]; }; @@ -6721,49 +6934,52 @@ in with self; { datetime = derive2 { name="datetime"; version="0.1.4"; sha256="0nn1yxknsn3crmwbkws5kvfjhd65dw0fkfbg67gba0dyaqp1jg37"; depends=[]; }; datetimeutils = derive2 { name="datetimeutils"; version="0.4-0"; sha256="0m98v8jv8n0yyaqxwqwkagwnj4xqx8dygdsmv564jifc355ghc5b"; depends=[]; }; datoramar = derive2 { name="datoramar"; version="0.1.0"; sha256="0zq6vhq6dmsyagmqrmb85z6fy9qhwra3s3iasr3jgc4ryr009pml"; depends=[httr jsonlite tibble]; }; + datos = derive2 { name="datos"; version="0.3.0"; sha256="0q0qjk9iahxzz4gycmiq4nb34kiqxb9bxbh55slp31bvx32zcz6n"; depends=[babynames dplyr forcats fueleconomy gapminder ggplot2 Lahman nasaweather nycflights13 rlang tibble tidyr yaml]; }; datr = derive2 { name="datr"; version="0.1.0"; sha256="0sqwhn6zdaq8i45ry207mpbda1djjaxp9mcn13hi5wkry6z0bmlr"; depends=[devtools]; }; datrProfile = derive2 { name="datrProfile"; version="0.1.0"; sha256="1bhyk3xjgwf92i765z3bkdnzkxg8fshriz9r6m371q1c75xysfil"; depends=[dplyr odbc RSQLite]; }; dave = derive2 { name="dave"; version="2.0"; sha256="1rraphpp34czyjj15xzvj1ihlnqzcppqls9n2g85n49zv0n1ngn8"; depends=[cluster labdsv nnet tree vegan]; }; dawai = derive2 { name="dawai"; version="1.2.3"; sha256="18dg81d1018f8ibm4p43ih6fjgm6r0qs5phqbp7pqrixjj3ydk58"; depends=[boot ibdreg mvtnorm]; }; daymetr = derive2 { name="daymetr"; version="1.4"; sha256="1xrkdjarkkikjbsxcjvhfba1dzrxh2nq7c04rvl0rkxh513sfqn1"; depends=[httr raster sp tibble tidyr]; }; - dbConnect = derive2 { name="dbConnect"; version="1.0"; sha256="1vab5l4cah5vgq6a1b9ywx7abwlsk0kjx8vb3ha03hylcx546w42"; depends=[gWidgets RMySQL]; }; dbEmpLikeGOF = derive2 { name="dbEmpLikeGOF"; version="1.2.4"; sha256="0vhpcxy702cp3lvlif2fzmvccys8iy7bv1fbg6ki2l8bvn2f7c5p"; depends=[]; }; dbEmpLikeNorm = derive2 { name="dbEmpLikeNorm"; version="1.0.0"; sha256="0h5r2mqgallxf9hin64771qqn9ilgk1kpsjsdj2dqfl3m8zg967l"; depends=[dbEmpLikeGOF]; }; - dbarts = derive2 { name="dbarts"; version="0.9-17"; sha256="1zbjri8d22m56dkj3rdzfvwn4h046367vjzl6l173wkq1fhraxwh"; depends=[]; }; - dbfaker = derive2 { name="dbfaker"; version="0.1.0"; sha256="00n2z4q5drpg26pw826i16rg07m7w66a0r466q2lrl14hxs4rcaq"; depends=[assertive DBI dplyr foreach parsedate RPostgreSQL tidyr]; }; - dbflobr = derive2 { name="dbflobr"; version="0.0.1"; sha256="1j97gwmqr8mv05yfd1dxm0v3l0vxrjrqf0drvkms2nja5asbhinq"; depends=[checkr DBI flobr glue RSQLite]; }; + dbarts = derive2 { name="dbarts"; version="0.9-18"; sha256="1i2azfd7nwsvwrf0wax8dzcdiss0ya662ikjfsb6bh943afzk6gx"; depends=[]; }; + dbflobr = derive2 { name="dbflobr"; version="0.1.0"; sha256="0sh14lf6qnj3z4lwkw27vv1s57jf5lfmw9lmz0hvd6nbfgmcr9rg"; depends=[chk clisymbols crayon DBI flobr glue rlang RSQLite]; }; dblcens = derive2 { name="dblcens"; version="1.1.7"; sha256="02639vyaqg7jpxih8cljc8snijb78bb084f4j3ns6byd09xbdwcw"; depends=[]; }; dblr = derive2 { name="dblr"; version="0.1.0"; sha256="0wzmhmp706mw0pkh81nsb7qzclwyhm6f2mjvpvz043ng5xrxwvvw"; depends=[CatEncoders data_table Metrics xgboost]; }; dbmss = derive2 { name="dbmss"; version="2.7-1"; sha256="0gasvpgmmpq8x776qmfrv4xiniz2fi1zxywzi7rm8xgmwr5q9kp3"; depends=[cubature ggplot2 Rcpp RcppParallel reshape2 spatstat spatstat_utils tibble]; }; - dbnR = derive2 { name="dbnR"; version="0.3.4"; sha256="0m273disj1byg4g21zgwspryjsxsdqj9scih2m0hcghf76n22822"; depends=[bnlearn data_table magrittr Rcpp]; }; - dbparser = derive2 { name="dbparser"; version="1.1.0"; sha256="12fx17bj076nl493mian9rz3iv1fx86qr0q2k2z6hqsvg4866q1j"; depends=[DBI dplyr odbc purrr readr RMariaDB RSQLite tibble XML]; }; + dbnR = derive2 { name="dbnR"; version="0.4.5"; sha256="1kq5c4n69zr7srp4jfyif061sc1da4zbvnj8c1fdr65nm6c2dgzz"; depends=[bnlearn data_table magrittr Rcpp]; }; + dbnlearn = derive2 { name="dbnlearn"; version="0.1.0"; sha256="0kmyiad7v96mnfi24d2pn3dqmk3g82sx348m1vhhqwijfnj53brb"; depends=[bnlearn bnviewer ggplot2]; }; + dbparser = derive2 { name="dbparser"; version="1.1.2"; sha256="0hfvlfi5w7i0ylgfa4vv84j5mc8z4xjfaxl2ky8n1688mimx9lrb"; depends=[DBI dplyr odbc purrr readr RMariaDB RSQLite tibble XML]; }; dbplot = derive2 { name="dbplot"; version="0.3.3"; sha256="1svizj9hcd417yii8ll9s3mnvdqpa5awy9xl71kbwpfcnpdzqf1r"; depends=[dplyr ggplot2 magrittr purrr rlang]; }; - dbplyr = derive2 { name="dbplyr"; version="1.4.3"; sha256="1si8sahr1kwq1xgjzi9klkahad07pyrsngy75y1f74f64907pb39"; depends=[assertthat DBI dplyr glue lifecycle purrr R6 rlang tibble tidyselect]; }; + dbplyr = derive2 { name="dbplyr"; version="1.4.4"; sha256="1v0p0557n6bz84nq9jc4182k00mdd1hvz7h4w3bbg81z0fmpj0d8"; depends=[assertthat blob DBI dplyr glue lifecycle magrittr purrr R6 rlang tibble tidyselect]; }; dbscan = derive2 { name="dbscan"; version="1.1-5"; sha256="1vh29nmmana2755zcy15i1mhj3amwc2r84cq9d71wqr7ygzynphk"; depends=[Rcpp]; }; dbstats = derive2 { name="dbstats"; version="1.0.5"; sha256="0pr80mx8y87l96hhg0rp3ajxl7yx2f8qr0y1zrjkbzxavjmp9k34"; depends=[cluster pls]; }; - dbx = derive2 { name="dbx"; version="0.2.5"; sha256="1g1pm0zw667m0wdzndak1qzym527lcl6gmdfzi5b3rlinkk2y0s2"; depends=[DBI]; }; + dbx = derive2 { name="dbx"; version="0.2.6"; sha256="0bc1pbyarfhr5v41msk9kdzj608nijmpj9lyp03ya6z6rbfnvbkd"; depends=[DBI]; }; dc3net = derive2 { name="dc3net"; version="1.2.0"; sha256="19ibsvbnq6y88vqvgkm31zrqwjhpml59d792bz0zkk50r1q5bnyr"; depends=[c3net igraph RedeR]; }; dcGOR = derive2 { name="dcGOR"; version="1.0.6"; sha256="0rvwa25r23yayx1i6xhkfaw2z85d2iyfx3slg3aq1m0fa7kj380p"; depends=[dnet igraph Matrix]; }; - dccvalidator = derive2 { name="dccvalidator"; version="0.2.0"; sha256="141vzkmzbm0wwc5pmkxw4hf5iqra6gnw97gdx6fq473fk22c6cd2"; depends=[config ggplot2 glue golem htmltools knitr markdown purrr reactable readr readxl reticulate rlang shiny shinyBS shinydashboard shinyjs skimr tibble visdat]; }; + dccvalidator = derive2 { name="dccvalidator"; version="0.3.0"; sha256="1l74pqvac0n7dyfzkz2m0m6j19c8icymbwcifp2g5qvrpznfhxjb"; depends=[config ggplot2 glue golem htmltools knitr markdown purrr reactable readr readxl reticulate rlang shiny shinyBS shinydashboard shinyjs skimr tibble visdat]; }; dclone = derive2 { name="dclone"; version="2.3-0"; sha256="0w1bhzsnmnhsrrw5ffm89pj2wy2fmx14y7g6b1mb2wlwbczjzzsh"; depends=[coda Matrix rjags rstan]; }; dclust = derive2 { name="dclust"; version="0.1.0"; sha256="1icfx52v3g7kkkc11pw0xlrc8dlx5q3n2zbrd3fccmw17jzxqbg7"; depends=[openssl phylogram]; }; dcminfo = derive2 { name="dcminfo"; version="0.1.7"; sha256="03r0ynzc5cck2rz20zbg5zx8v6s66ivizqav1pjkyvp6kxkmnf8q"; depends=[CDM]; }; dcmle = derive2 { name="dcmle"; version="0.3-1"; sha256="1d6zk9413h30wcw8q1gnjzk67vshmjcpnh8zjxrsh1h69i1z6rpy"; depends=[coda dclone lattice]; }; dcmodify = derive2 { name="dcmodify"; version="0.1.2"; sha256="093rh3r3n0wjdpx861xiqd1zqd5v1v9rzxgcynz4awr7jbm5xszi"; depends=[settings validate yaml]; }; + dcov = derive2 { name="dcov"; version="0.1.1"; sha256="0c3a5dzpizsxlsh723pcd0d7n0mgfc9y35vrfhmskp3c1x639mh3"; depends=[Rcpp RcppArmadillo]; }; dcurver = derive2 { name="dcurver"; version="0.9.1"; sha256="1cfy0j3rmi3laszrgd3i59cfy4xfs2p6h9dcwbkwq6wnshrpypfn"; depends=[Rcpp RcppArmadillo]; }; dcv = derive2 { name="dcv"; version="0.1.1"; sha256="12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj"; depends=[lmtest]; }; ddalpha = derive2 { name="ddalpha"; version="1.3.11"; sha256="1sdnb47r534nh138zk3a6b2mgi74nvshc7p5m304vjs9jlx4l2y3"; depends=[BH class geometry MASS Rcpp robustbase sfsmisc]; }; dde = derive2 { name="dde"; version="1.0.1"; sha256="0qgnxb27a2wnrbfk5v22i985mqhjp4hp05vl1ccsapbxkpf0gqcv"; depends=[ring]; }; ddi = derive2 { name="ddi"; version="0.1.0"; sha256="0pnkylz7l6brx6i73wys637w811psxhnr39lcmkag41s6jcgabd5"; depends=[]; }; ddiv = derive2 { name="ddiv"; version="0.1.0"; sha256="1r2sxlkw1vxf2svdi1nary3hb7c5k1b4j820mj268r9swmy632ch"; depends=[MASS segmented]; }; + ddp = derive2 { name="ddp"; version="0.0.2"; sha256="0fh1ml5gsk26p2i9cnv0hn5kbix0rrl3xb60y6vnpxzsr2n6xw25"; depends=[]; }; ddpca = derive2 { name="ddpca"; version="1.1"; sha256="1qsanid7sr2nc9pwzyz4cbjc1vg0rj255d3rnh1rb22agrgj2bc1"; depends=[MASS Matrix quantreg RSpectra]; }; - ddpcr = derive2 { name="ddpcr"; version="1.14"; sha256="16f80bg5zfjq2vzd7f9bk2s6alia3rcv21p04bjvj47aq5pk22ys"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinyjs tibble]; }; + ddpcr = derive2 { name="ddpcr"; version="1.15"; sha256="04q2k6kag3qx9g6iarb84ski7s895xdd20zlaw7wmidfv038kmws"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinyjs tibble]; }; ddsPLS = derive2 { name="ddsPLS"; version="1.1.4"; sha256="0h0iiycprham72k3yq81d15gnliln0i2r71lxhsqrcbrly9hpanr"; depends=[corrplot doParallel foreach MASS RColorBrewer Rcpp Rdpack]; }; ddst = derive2 { name="ddst"; version="1.4"; sha256="1y0immm337adkd2bjx8c5pf02w9wysv3gj26f4qf0jiba0f2wk8n"; depends=[evd orthopolynom]; }; deBInfer = derive2 { name="deBInfer"; version="0.4.2"; sha256="108vijk71sgsj14hwfv78r4lnn68cybvnpr92zvrvl0d82b7qxfd"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; }; deGradInfer = derive2 { name="deGradInfer"; version="1.0.1"; sha256="0yczn63fhpirvz1g1kq9q0m04sisflxxgxy70c87jyvrw12nfwss"; depends=[deSolve gdata gptk]; }; deSolve = derive2 { name="deSolve"; version="1.28"; sha256="0jasvdzig0pzhzspmy20089az19r91xjfb9q6h8gj7c4mr6fymac"; depends=[]; }; deTS = derive2 { name="deTS"; version="1.0"; sha256="08yq7vfcd8fv8qw2w0f1rnj3rzys9kslmkqspmiz6prmzqvj1zf1"; depends=[pheatmap RColorBrewer]; }; + deTestSet = derive2 { name="deTestSet"; version="1.1.7.2"; sha256="0ra7686zkyaj61fd6s2mm6blzpqhplw9icwzfczk9aagg8nc4s72"; depends=[deSolve]; }; deaR = derive2 { name="deaR"; version="1.2.1"; sha256="16rhpdw3fyc2fyrm0yfmq0im5r4svhs4v52gjh9y6lx4n8pmncph"; depends=[dplyr ggplot2 gridExtra igraph lpSolve plotly tidyr writexl]; }; deadband = derive2 { name="deadband"; version="0.1.0"; sha256="02pq3d0l0wy8bdlyfir3zf46j1ascx4qajyq5cf28yl62q6ngq5d"; depends=[TTR]; }; deal = derive2 { name="deal"; version="1.2-39"; sha256="0sw0v1mm004ky1gjw3dmvf2vb7nf2j9s9386bhqxijw63j7xnjd3"; depends=[]; }; @@ -6771,10 +6987,10 @@ in with self; { debar = derive2 { name="debar"; version="0.1.0"; sha256="03xlhnbvmkg93f6zl3x22rfwvs17fscvl8irmnm19pifk4bvbpyd"; depends=[ape aphid seqinr]; }; debugme = derive2 { name="debugme"; version="1.1.0"; sha256="1c9sg55zvf10h8198jdnpamm6f66lzw3c3jnmdp9ls6na0j0xbjd"; depends=[crayon]; }; debugr = derive2 { name="debugr"; version="0.0.1"; sha256="0lfq0s0hibd00558vl3dmvrkzxjc7q62xr8sqzai0pv9a9lhixcn"; depends=[rprojroot rstudioapi]; }; - decido = derive2 { name="decido"; version="0.2.0"; sha256="17myg67qry1sbd1scv9bbvdh67fpcnqcb6r8n0kajdxb96vnlqk0"; depends=[Rcpp]; }; + decido = derive2 { name="decido"; version="0.3.0"; sha256="14y3z5ys5y3kffgm0dk92rx4vd1mi9jvxn7pqvwi4jhyx7wx06pw"; depends=[Rcpp]; }; decision = derive2 { name="decision"; version="0.1.0"; sha256="13d0yyg5zp7n3r92l0l1dsffxfph6vacrlzga9rz41l5pja72z6g"; depends=[]; }; - decisionSupport = derive2 { name="decisionSupport"; version="1.105.2"; sha256="095qwgsw6y1clv2hyjr56s2wg8q1nhd22ikh9b3l2mcsw2xdzvjy"; depends=[chillR fANCOVA ggplot2 msm mvtnorm nleqslv rriskDistributions]; }; - deckgl = derive2 { name="deckgl"; version="0.2.5"; sha256="1rqw84pzbip9752q4zmhrhv8gis5dc8q6v1kkgnblhkg10wrb0lw"; depends=[base64enc htmltools htmlwidgets jsonlite magrittr readr tibble yaml]; }; + decisionSupport = derive2 { name="decisionSupport"; version="1.105.3"; sha256="04bc3w0cyxhsay1padk4c27jjmbymymr9gazgjx5qykgr3qdszj6"; depends=[chillR fANCOVA ggplot2 msm mvtnorm nleqslv rriskDistributions]; }; + deckgl = derive2 { name="deckgl"; version="0.2.7"; sha256="0ifv6j0kbwayl60bf1rwd1h7424npqsqsvb44ngg7v0ik4bgbyfx"; depends=[base64enc htmltools htmlwidgets jsonlite magrittr readr tibble yaml]; }; decode = derive2 { name="decode"; version="1.2"; sha256="1qp0765gl3pgfdzjwj7icf3zminxxmrlw6gx3vj51y6c2y5ws4as"; depends=[]; }; decoder = derive2 { name="decoder"; version="1.2.2"; sha256="1jxgd32bn36ldal26wivhdxgjy247l7r4ickacr1p8rrwxvhpk18"; depends=[]; }; decomposedPSF = derive2 { name="decomposedPSF"; version="0.1.3"; sha256="0p9n0qi21facdp9c4fzs78ap4w1wvpvkv51kgx1gkr949kw8cv4n"; depends=[forecast PSF Rlibeemd tseries]; }; @@ -6782,23 +6998,24 @@ in with self; { decon = derive2 { name="decon"; version="1.2-4"; sha256="1v4l0xq29rm8mks354g40g9jxn0didzlxg3g7z08m0gvj29zdj7s"; depends=[]; }; deconstructSigs = derive2 { name="deconstructSigs"; version="1.8.0"; sha256="014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb reshape2]; }; deconvolveR = derive2 { name="deconvolveR"; version="1.1"; sha256="0iz8phshbzr0xpp3i305dyz75l95w4lh547lvw2fdvjqg6i0c6sv"; depends=[]; }; + decor = derive2 { name="decor"; version="1.0.0"; sha256="1vk1szw267mcs9q7saffkrlnlncnw9k70g9lhj81iwkwfx8ir962"; depends=[tibble vctrs]; }; deducorrect = derive2 { name="deducorrect"; version="1.3.7"; sha256="10lvhdnnc6xiy20hy6s5rpqcvilj8x0y6sn92rfjkdbfsl00sslp"; depends=[editrules]; }; deductive = derive2 { name="deductive"; version="0.1.3"; sha256="19h41a20c27gmky9xrgqkf0n2s8fzn2hiivs5dg71kl9gc4m1jhn"; depends=[lintools stringdist validate]; }; deep = derive2 { name="deep"; version="0.1.0"; sha256="1764cnsax8jwp2pb6rnmlb0f5m99jss84yi9rp017hdm20izvzrq"; depends=[]; }; deepNN = derive2 { name="deepNN"; version="1.0"; sha256="0jpf25i0f3a0dfqykx8dl8qq7f37l1n28pzp715bxc0izsrrx9bk"; depends=[Matrix]; }; deepboost = derive2 { name="deepboost"; version="0.1.6"; sha256="1nf9gjk9gjl2dz7cr3vh5lg8nxkbqwr82a132nw853axbdgbs9ga"; depends=[Rcpp]; }; - deepdep = derive2 { name="deepdep"; version="0.2.0"; sha256="1yl1vnz9qysv38zn7dhz05s38l701zrbrx58bcpg862i8xf1nl40"; depends=[cranlogs ggforce ggplot2 ggraph graphlayouts httr igraph jsonlite scales]; }; + deepdep = derive2 { name="deepdep"; version="0.2.1"; sha256="08v2pxbk1w5ajf3zfnkksbwgc29fj7j2znrrix83nyaxmyz8yajn"; depends=[cranlogs ggforce ggplot2 ggraph graphlayouts httr igraph jsonlite scales]; }; deepdive = derive2 { name="deepdive"; version="1.0.1"; sha256="1385pxkcdaf3rs2br1dghm7d7zd94mfgmqjns4z09mryv72n7cl0"; depends=[data_table fastDummies plyr rpart stringr treeClust]; }; deepgmm = derive2 { name="deepgmm"; version="0.1.59"; sha256="1kmvk0vmfzs49n67j2cd1d46fi9gvmxklcqghgmwfw25k4xmpgkb"; depends=[corpcor mvtnorm]; }; deepnet = derive2 { name="deepnet"; version="0.2"; sha256="09crwiq12wzwvdp3yxhc40vdh7hsnm4smqamnk4i6hli11ca90h4"; depends=[]; }; default = derive2 { name="default"; version="1.0.0"; sha256="0hzxgp9la9kll5cw3m4gd02rii571xsn1v53kz407k7k6rfg5mda"; depends=[]; }; - define = derive2 { name="define"; version="0.2.8"; sha256="12xy1l1z1ilk85kbl7x4na99n6hc5axwrhpb6m6ipmbii4vv407v"; depends=[encode Hmisc latexpdf SASxport spec]; }; + define = derive2 { name="define"; version="0.2.9"; sha256="0sq7ryiz1py0yw7g2bncd834zsdiy1y7rck8k4grrx2ips5gv2jy"; depends=[encode Hmisc latexpdf SASxport spec]; }; deflateBR = derive2 { name="deflateBR"; version="1.1.2"; sha256="17zsy10k12gmffbk7nagi60xj347q0bf7wr885fiylqz2xiy9fl9"; depends=[dplyr httr lubridate]; }; deformula = derive2 { name="deformula"; version="0.1.1"; sha256="0h85yzl8kvjwrn1mkzyblvknf7gg8kx8y85qnvkwfbr9ik42ngn1"; depends=[]; }; degreenet = derive2 { name="degreenet"; version="1.3-3"; sha256="07mkj2sdp09624mmb1x3djjypnrzn43qn2j4m93blli51j6zchm3"; depends=[igraph network]; }; deisotoper = derive2 { name="deisotoper"; version="0.0.7"; sha256="0lpmx3qy44xjlil4nsbvcbczxq22vr8xn6v9a5bdx7cd31qwm2l3"; depends=[rJava]; }; delayed = derive2 { name="delayed"; version="0.3.0"; sha256="04f4k683jzb763sb9knb81lw8df56y1378g4i3c1x8m83bvj1mhs"; depends=[assertthat BBmisc data_table future igraph progress R6 rlang rstackdeque uuid visNetwork]; }; - deldir = derive2 { name="deldir"; version="0.1-25"; sha256="0kdglv8rc1pb4ilcid4xc9wpv5kkj2y6x6wg7919k3hya7mz58ph"; depends=[]; }; + deldir = derive2 { name="deldir"; version="0.1-28"; sha256="12ys8jdcrgzhf9m2yirlqfars397qb0q0pbypahmfa66lgr6wdx5"; depends=[]; }; delt = derive2 { name="delt"; version="0.8.2"; sha256="06g03wy9r2qvly0lnv5fv4k366mhlk56qkvak0xaxy99p1i34kmv"; depends=[denpro]; }; deltaPlotR = derive2 { name="deltaPlotR"; version="1.6"; sha256="15vjg3viyfrxvvh34p8i7j8p0vpg5628g8198adhi0i2ri3ygz9a"; depends=[MASS]; }; deltar = derive2 { name="deltar"; version="1.0.0"; sha256="1ki89ysz4qlq5z094ybg3aqfcb6g633ccvpj1cg6nri9z5qjwpm1"; depends=[Bchron]; }; @@ -6809,6 +7026,7 @@ in with self; { demogR = derive2 { name="demogR"; version="0.6.0"; sha256="06x82ffbdv6ifl8xh52d3npdwha67v1ylfjp78j5pa4wdqkg221b"; depends=[]; }; demography = derive2 { name="demography"; version="1.22"; sha256="1m15capbfknr4rqxmfgj1vb7rmgambk6r9ic37149525sg7wn3j6"; depends=[cobs forecast ftsa mgcv rainbow RCurl strucchange]; }; demu = derive2 { name="demu"; version="0.3.0"; sha256="1mp5iz8mg0d6cyqi3f6fdhk6x5xxvng5bi13b7jnlp60wpjrq0il"; depends=[ClusterR fields Matrix Rcpp RcppArmadillo spam]; }; + dendRoAnalyst = derive2 { name="dendRoAnalyst"; version="0.1.1"; sha256="0pdhd89kn9ndc9xdqwpjb1h49zwgya8whjfhpjvlc7cwb3112xj1"; depends=[boot pspline zoo]; }; dendextend = derive2 { name="dendextend"; version="1.13.4"; sha256="1pjbz6sb4pgh3d5pm53vmf3q8y6lq3hrgjd6547xxs3m63sb8mn4"; depends=[ggplot2 magrittr viridis]; }; dendroTools = derive2 { name="dendroTools"; version="1.0.7"; sha256="052957wbrwgnm5lab3ynwlziih4d0hhm7agaa907zfbrz2xl6nr0"; depends=[boot brnn Cubist dplyr ggplot2 gridExtra knitr lubridate magrittr MLmetrics oce plotly psych randomForest reshape2 scales viridis]; }; dendroextras = derive2 { name="dendroextras"; version="0.2.3"; sha256="0hb7crbgsnbcwvbk05iz5ik45n7zgysmwjj6xc46131yd8l0i1qx"; depends=[]; }; @@ -6826,6 +7044,7 @@ in with self; { denvax = derive2 { name="denvax"; version="0.1.2"; sha256="0a8x7z7jagshc5h6xy24xrvqv0gm08f78ik6y8ki4i0mhl8c5fyx"; depends=[]; }; depcoeff = derive2 { name="depcoeff"; version="0.0.1"; sha256="08vs0yzfvd4ahcs5rz4i4spp8l6fg45bm0m22gn5rzxc4759mzac"; depends=[copula Rcpp]; }; depend_truncation = derive2 { name="depend.truncation"; version="3.0"; sha256="1jym52qxx8v4kbq2578d03q2593q96jccr85if47djikw0aaxmcr"; depends=[mvtnorm]; }; + depigner = derive2 { name="depigner"; version="0.8.1"; sha256="0cw4biz8p1bavni59djsfrbv59wnw256ikykjmlpjpf1xcwr1g9r"; depends=[broom desc dplyr fs ggplot2 Hmisc magrittr progress purrr rlang rprojroot stringr telegram_bot tibble tidyr usethis]; }; depmix = derive2 { name="depmix"; version="0.9.16"; sha256="1vi9fi131ni34z9p3x6pdp6y9v0y0nx71zg1q8898frhqwbwhd9c"; depends=[MASS]; }; depmixS4 = derive2 { name="depmixS4"; version="1.4-2"; sha256="07d4fxwnbl3jqczrylbvdch9q87az37jrjsmvilhl9h98z31wzaq"; depends=[MASS nlme nnet Rsolnp]; }; depth = derive2 { name="depth"; version="2.1-1.1"; sha256="0szy0027nh4ps1z919i740i50app5q7cfyg1fj7pdyl45nbl8k6m"; depends=[abind circular rgl]; }; @@ -6845,26 +7064,26 @@ in with self; { desiR = derive2 { name="desiR"; version="1.2.1"; sha256="0ghcv96bbwn74mka4dpf2lkpnlikjn3q6lx2sl8bbw77nriap0n6"; depends=[]; }; designGG = derive2 { name="designGG"; version="1.1"; sha256="1x043j36llwd7kd4skbpl2smz2ybsxjqf5yd1xwqmardq60gdv2w"; depends=[]; }; designmatch = derive2 { name="designmatch"; version="0.3.1"; sha256="0px6iyqik4sfs25yybamvf3ay0vd6r75acj8hin76jl6l7fwk30f"; depends=[lattice MASS Rglpk slam]; }; - designr = derive2 { name="designr"; version="0.1.9"; sha256="1rdnz7xq2h7bxb8fvsimj4bjdqx9z0xnsg59ibb0gi69vvlswac8"; depends=[crossdes dplyr MASS tibble]; }; + designr = derive2 { name="designr"; version="0.1.10"; sha256="1x7aixhz5cgjh44m2w2zgz5gmilbs2vj78hyg1sqjb483g36x224"; depends=[crossdes dplyr MASS tibble]; }; desirability = derive2 { name="desirability"; version="2.1"; sha256="094gxvp6a60lfcc0a0gk9rv1p6ajnzq9m58sy8cvhcj5337g4fmk"; depends=[]; }; desire = derive2 { name="desire"; version="1.0.7"; sha256="0jmj644nj6ck0gsk7c30af9wbg3asf0pqv1fny98irndqv508kf6"; depends=[loglognorm]; }; - desplot = derive2 { name="desplot"; version="1.6"; sha256="1vxczs14afsapagvvsvcwi9ar3z74szs0m1g14zqkkkd47h3cij3"; depends=[ggplot2 lattice reshape2]; }; + desplot = derive2 { name="desplot"; version="1.7"; sha256="0fb3scmclqmgnjxhmvgbd2zszw9ywis9vhwmfizhwrrz8klxiily"; depends=[ggplot2 lattice reshape2]; }; details = derive2 { name="details"; version="0.2.1"; sha256="03fw3jbf1a34w9c205wwjkqnw6ic1gylsf36qw33mx4ba252s2hy"; depends=[clipr desc httr knitr magrittr png withr xml2]; }; - detect = derive2 { name="detect"; version="0.4-2"; sha256="03xzv13y2l15afyp00lgvbh51vxg1jaakxjcbnsxzdgb11039x2g"; depends=[Formula Matrix pbapply]; }; + detect = derive2 { name="detect"; version="0.4-4"; sha256="1gzd98b4kg5rw0kpgznrb1wmr3iavdq5983n6wqx33lga1lqq9d6"; depends=[Formula Matrix pbapply]; }; detectRUNS = derive2 { name="detectRUNS"; version="0.9.6"; sha256="0yl1x0jz66hingbl094picsiyrxzxvnz0grq63rva6nwn7pv1c0b"; depends=[data_table ggplot2 gridExtra iterators itertools plyr Rcpp reshape2]; }; detector = derive2 { name="detector"; version="0.1.0"; sha256="010i063b94hzx7qac8gpl67gmk7hzgqm9i1c7pbbw4la3wcd9lz7"; depends=[stringr]; }; detectseparation = derive2 { name="detectseparation"; version="0.1"; sha256="0y0d1irw3pzvyvc7smii0ikx7dv376s2cdixjcs5c3jsw0iqxyim"; depends=[lpSolveAPI pkgload ROI ROI_plugin_lpsolve]; }; detpack = derive2 { name="detpack"; version="1.1.3"; sha256="1mk2k9akagz7knd4n5p8nxkmnm2mdv9izk4i5yl2v9nv5v39mc4h"; depends=[]; }; detrendeR = derive2 { name="detrendeR"; version="1.0.4"; sha256="1z10gf6mgqybb9ml6z3drq65n7g28h2pqpilc2h84l6y76sy909c"; depends=[dplR]; }; - detrendr = derive2 { name="detrendr"; version="0.6.5"; sha256="1xl6vr3hf47drfyg0mfxdkdpcxphc8skbkdijz4csjgki875i6a6"; depends=[autothresholdr checkmate doParallel dplyr filesstrings foreach ijtiff iterators magrittr matrixStats plyr purrr Rcpp RcppParallel rlang stringr withr]; }; - detzrcr = derive2 { name="detzrcr"; version="0.3.0"; sha256="1f4c6l9nk7cis5gnf3f97nys4b9c13cxcn2h1m60mva1d5p9zzpb"; depends=[DT ggplot2 MASS shiny]; }; - devEMF = derive2 { name="devEMF"; version="3.7"; sha256="0fv44y440xr52xymh1zyrryf7xrkm9lbs3qgybwfzz0ssx2iy6al"; depends=[]; }; + detrendr = derive2 { name="detrendr"; version="0.6.8"; sha256="00arl6jzgz6m6dgivxmsqwhp2mw5rvmz5z94mai80gi0vr36drwa"; depends=[arrayhelpers autothresholdr checkmate doParallel dplyr filesstrings foreach ijtiff iterators magrittr plyr purrr Rcpp RcppParallel rlang stringr withr]; }; + detzrcr = derive2 { name="detzrcr"; version="0.3.1"; sha256="0afi1ir8il5xmzkpmbc2m5mvmgzlqw8qdn04gbnwl74a03yaxxmj"; depends=[DT ggplot2 MASS shiny]; }; + devEMF = derive2 { name="devEMF"; version="3.8"; sha256="1dw1zz0dichkcmyav7ibi6rviamfnsqf2am23n53zz2yjgikvhpj"; depends=[]; }; devFunc = derive2 { name="devFunc"; version="0.1"; sha256="0f2s5gssk9napmah7zcss1rnh7pzlq90gzwcnvyr9rrq6k118n8q"; depends=[plyr stringr]; }; devRate = derive2 { name="devRate"; version="0.1.10"; sha256="0c5hg98w83d02lvb7rbgx8c24li58vpxjy71if337p7cyzzd1lqg"; depends=[]; }; - devoid = derive2 { name="devoid"; version="0.1.0"; sha256="1aq7yyfpid3r41c6v5v92im2iq9m3d7gnisc9rkc9zpjfpbpzpx8"; depends=[]; }; - devtools = derive2 { name="devtools"; version="2.3.0"; sha256="1l6w765q180bg5mmdq5k2ymf6apz7ldhnknzf6ynfp1kf70pbhsg"; depends=[callr cli covr crayon desc digest DT ellipsis git2r glue httr jsonlite memoise pkgbuild pkgload rcmdcheck remotes rlang roxygen2 rstudioapi rversions sessioninfo testthat usethis withr]; }; - dexter = derive2 { name="dexter"; version="1.0.7"; sha256="0didyrdiyv3vcimkmr7g4nl9pl6678vj0a7750nbi5zyn6q6dll9"; depends=[DBI dplyr MASS Rcpp RcppArmadillo rlang RSQLite tidyr]; }; - dexterMST = derive2 { name="dexterMST"; version="0.1.2"; sha256="1h56dr2z2pzi4zdy3dmyb2vg2jg1v5602c497khkvrbr7qfx8zra"; depends=[crayon DBI dbplyr dexter dplyr fastmatch igraph Rcpp rlang RSQLite tibble tidyr]; }; + devoid = derive2 { name="devoid"; version="0.1.1"; sha256="14cf75wih7401vmrfmswc9cihgmbyn90wg2vjkzv628mm5fgg01h"; depends=[]; }; + devtools = derive2 { name="devtools"; version="2.3.1"; sha256="100mgighf6vqsfwv2qw5rlnd5sfvcji9l9jrmx9ii28r9fd2gyas"; depends=[callr cli covr desc DT ellipsis httr jsonlite memoise pkgbuild pkgload rcmdcheck remotes rlang roxygen2 rstudioapi rversions sessioninfo testthat usethis withr]; }; + dexter = derive2 { name="dexter"; version="1.0.8"; sha256="1jnizhcv284nmp6rc2dgy26b2iwb0hbjy9c1i0ky7k78g24r5679"; depends=[DBI dplyr MASS Rcpp RcppArmadillo rlang RSQLite tidyr]; }; + dexterMST = derive2 { name="dexterMST"; version="0.9.0"; sha256="0lawpqz7jrfshc16fjx6f44z6mqy3b9nl56h1nzm4jkp4kv9lizr"; depends=[crayon DBI dexter dplyr igraph Rcpp RcppArmadillo rlang RSQLite tidyr]; }; dextergui = derive2 { name="dextergui"; version="0.2.2"; sha256="1g6qxjmxkrna10lahsdfilpjw587kk6zh8vs1saw9l27i3izpbi9"; depends=[Cairo DBI dexter dplyr DT ggExtra ggplot2 ggridges htmltools htmlwidgets jsonlite networkD3 RCurl readODS readxl rlang shiny shinyBS shinyFiles shinyjs tibble tidyr writexl]; }; dfCompare = derive2 { name="dfCompare"; version="1.0.0"; sha256="1lhx69j0bkjbnp5jz23hrbxjcf04vf3big4k593ixz003xs2077f"; depends=[]; }; dfConn = derive2 { name="dfConn"; version="0.2.1"; sha256="03yl00mqj6r7p2xmrwam2chgqlq4qpfcm85n4b3b41vrm27xg11g"; depends=[data_table doParallel fields foreach ggplot2 gplots gtools nlme Rcpp RcppArmadillo stringr]; }; @@ -6872,19 +7091,21 @@ in with self; { dfcomb = derive2 { name="dfcomb"; version="3.0-0"; sha256="1vsqlhmajv33nbnh8igisyv3rzzh2fdwbk5y0zlnrwvr79r19k5w"; depends=[BH Rcpp RcppProgress]; }; dfcrm = derive2 { name="dfcrm"; version="0.2-2.1"; sha256="01rn3zvi9xljmx48lkclckhnixian1vwq1frr8n784dsclp86spg"; depends=[]; }; dfexplore = derive2 { name="dfexplore"; version="0.2.1"; sha256="04nbhn59l1kas26nwj4qflkjvvr33sj1mm7zg7fhvya85gvlhrbf"; depends=[ggplot2]; }; + dfidx = derive2 { name="dfidx"; version="0.0-3"; sha256="01dgd0nbx9gs4l45lmlkilw8l4pympyh3xrsjfds3610417zgmw1"; depends=[dplyr Formula]; }; dfmeta = derive2 { name="dfmeta"; version="1.0.0"; sha256="0ca48adfhaxac33jmxbynlyg3ak9l5mmjhlr69n4hnz6325gn9vb"; depends=[data_table ggplot2 lme4 plyr]; }; dfmta = derive2 { name="dfmta"; version="1.7-1"; sha256="13i4ck32z2p4plmy7lz2y4zakc1w915f5h6d9s6vj71212rrg9qm"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; dfoliatR = derive2 { name="dfoliatR"; version="0.1.0"; sha256="1vgcz763fvapwh98453040yddyka83p9bhgqssx9c0n69z20ylix"; depends=[dplR dplyr forcats ggplot2 ggpubr MASS plyr reshape2 rlang]; }; dfoptim = derive2 { name="dfoptim"; version="2018.2-1"; sha256="1gya0sx8ajy04kscds06d6m9prxdwr1dmyfc6awsm6r1jwbibzb3"; depends=[]; }; + dformula = derive2 { name="dformula"; version="0.1"; sha256="0028qm3wsfpjbkpza5nb87pcm8cg0075jclcy6s4wfflizgfs6n4"; depends=[formula_tools]; }; dfped = derive2 { name="dfped"; version="1.1"; sha256="11ffsah14igba276m9d3cla0kgb3isizm5d7j1iqcd0wq23il7hq"; depends=[ggplot2 rstan]; }; dfphase1 = derive2 { name="dfphase1"; version="1.1.1"; sha256="0bk4bl5lqd7m4mzk6kg71fmh918wcy85zghr3lyayxlk30fl4ppc"; depends=[lattice Rcpp robustbase]; }; dfpk = derive2 { name="dfpk"; version="3.5.1"; sha256="010rlxj66ar3y61fnm7ys3p6aimlr8ylqq4q4flzr9m88klz8701"; depends=[BH dfcrm ggplot2 PK Rcpp RcppEigen rstan StanHeaders]; }; dfvad = derive2 { name="dfvad"; version="0.3.0"; sha256="1n6hwpgnpd8vlv187ajl6js8z3yvl60h87q3kzgi9hvn9v73ip5z"; depends=[]; }; dga = derive2 { name="dga"; version="1.2"; sha256="13mfampnghcs5xplzq69bw948lqhw561pn54j3gb0ydsg5bm5vmr"; depends=[chron]; }; + dggridR = derive2 { name="dggridR"; version="2.0.4"; sha256="11n07k3fpk6yysy72az68pnkaf6pf8msfzgllsx54hcvgkmg5ac3"; depends=[dplyr ggplot2 Rcpp rgdal sp]; }; dglars = derive2 { name="dglars"; version="2.1.6"; sha256="13bnvinqgpmkisjri0sjsyzsh9nqplpry3n3galkv8dqhgpncq4w"; depends=[Matrix]; }; dglm = derive2 { name="dglm"; version="1.8.3"; sha256="0vj4vddqcrjzgqsi6zsxm22gj5pa5dm50wcxip4vi8kbwxaahnaj"; depends=[statmod]; }; dgmb = derive2 { name="dgmb"; version="1.2"; sha256="1r5md917wipx78n63x87fpvsc3h87c68cpacrrs9dhss199p1a5k"; depends=[abind MASS]; }; - dgo = derive2 { name="dgo"; version="0.2.15"; sha256="16z3vag1fwsnmynqh0zpwq5qp5ac3xf4787lwqy7asx8qgcc3wmw"; depends=[assertthat data_table dgodata ggplot2 lubridate R6 rstan survey]; }; dgodata = derive2 { name="dgodata"; version="0.0.2"; sha256="03cyiig8pn7fdkrkrd29cwy5g63bp57bpl9jmdxfi03smngzbz0m"; depends=[]; }; dgof = derive2 { name="dgof"; version="1.2"; sha256="02qnb3i131hx05k8l5n3xbl5sqmmc2fh19bsgcacgj8ixs4wyjvi"; depends=[]; }; dgumbel = derive2 { name="dgumbel"; version="1.0.1"; sha256="1qlc81rh6fcrai9ls27j83bjac26qhpfnchf9pdjz86dyclfjx43"; depends=[Rcpp RcppEigen]; }; @@ -6893,26 +7114,26 @@ in with self; { dhglm = derive2 { name="dhglm"; version="2.0"; sha256="1918wkylldcdxjggly3a4yh4cv2nkig5bjfx0j79av633hahlg92"; depends=[boot car MASS Matrix sandwich]; }; dhh = derive2 { name="dhh"; version="0.0.1"; sha256="00kg2x1was85aq2vr15bak8y5p4mymbs8pbriijlbw64401djmb0"; depends=[]; }; di = derive2 { name="di"; version="1.1.4"; sha256="1w2gjhyi410z98d8wnhbd69jxm69nz4pmnr4fb09i70a90f53s25"; depends=[scales]; }; - diagis = derive2 { name="diagis"; version="0.1.3-1"; sha256="1cagcr5znhrg4fp96d79ly0z7bs3hhh3zfspclyfc88p2p3qsd96"; depends=[coda ggplot2 gridExtra Rcpp RcppArmadillo]; }; + diagis = derive2 { name="diagis"; version="0.1.5"; sha256="1vjj27nn1fjx7wpqpn5x7pir4kd7b4pz9y6mz8a4jby9imc5ypnk"; depends=[coda ggplot2 gridExtra Rcpp RcppArmadillo]; }; diagmeta = derive2 { name="diagmeta"; version="0.4-0"; sha256="1z7h1sxcqn53121m33d2w196lyzkrgj1afc8i8h9iab99fgqvpk7"; depends=[lme4 meta]; }; - diagonals = derive2 { name="diagonals"; version="1.0.1"; sha256="0m9hlxww6n405fn26gbw36kjlb7b9759hj56lz820wkj972zw301"; depends=[]; }; + diagonals = derive2 { name="diagonals"; version="5.2.0"; sha256="0la1w9frnz5znljzcs9np4cn32rhb6zw6bc1cbnfq8n8nnrviy10"; depends=[]; }; diagram = derive2 { name="diagram"; version="1.6.4"; sha256="0f6ffprn5k0ir1s7m9s7izc64aa17r3gnygagz5bihrlsvawaavw"; depends=[shape]; }; - dialr = derive2 { name="dialr"; version="0.3.1"; sha256="0lh3glgh95r1rnbnbx2qii429kp3dk4yhwf6zm3n0zxiibmsrhgf"; depends=[dialrjars rJava]; }; - dialrjars = derive2 { name="dialrjars"; version="8.12.0"; sha256="0c68n2i29v69xlyzsivzajhrh55b1ih55sr6j907klxgds1hb767"; depends=[rJava]; }; - dials = derive2 { name="dials"; version="0.0.6"; sha256="0hvhn8adkb8pywfh058vj681bccm4iyky11ijc01xk2w3iaslyr9"; depends=[DiceDesign dplyr glue lifecycle purrr rlang scales tibble withr]; }; + dialr = derive2 { name="dialr"; version="0.3.2"; sha256="0b0dbk25j5ixwn8gxf651bj2akjcy1rjr3c191h8wddn9y99ip06"; depends=[dialrjars rJava]; }; + dialrjars = derive2 { name="dialrjars"; version="8.12.6"; sha256="10sbhm8n48d2d0php3cm6yx5cssr2gk34pplvi9adv662214pmhx"; depends=[rJava]; }; + dials = derive2 { name="dials"; version="0.0.8"; sha256="0jxmlcy20y57chflx91fqz6c4pbdckzr7jirq4s72vp723avrr4p"; depends=[DiceDesign dplyr glue purrr rlang scales tibble vctrs withr]; }; diaplt = derive2 { name="diaplt"; version="1.3.0"; sha256="1kkqhkv3s8rrpqd05jidjdnqmlnb3s9f8rr34rfqj7k4nh0qzzcz"; depends=[]; }; dice = derive2 { name="dice"; version="1.2"; sha256="0gic7lqnsdmwv3dbzwwmcwdfyfqlq8kpr2pciqphd1j2ligzwl3s"; depends=[gtools]; }; - diceR = derive2 { name="diceR"; version="0.6.0"; sha256="1jwgngvajnm80g079z4jks5f3y2hy7hz3h9cf7c6wlb8spmaffxr"; depends=[abind apcluster assertthat blockcluster caret class cli clue cluster clusterCrit clValid dbscan dplyr e1071 flux ggplot2 gplots Hmisc infotheo kernlab klaR kohonen magrittr mclust NMF poLCA progress purrr quantable RankAggreg RColorBrewer Rcpp Rtsne sigclust stringr tibble tidyr]; }; + diceR = derive2 { name="diceR"; version="1.0.0"; sha256="0x0ck76qx0w35pmbbalm8xqrscc4nhvcnzwk9viczn8qh9km7xq6"; depends=[abind assertthat class clue clusterCrit clValid dplyr ggplot2 infotheo klaR magrittr mclust NMF purrr RankAggreg Rcpp stringr tibble tidyr yardstick]; }; dichromat = derive2 { name="dichromat"; version="2.0-0"; sha256="1l8db1nk29ccqg3mkbafvfiw0775iq4gapysf88xq2zp6spiw59i"; depends=[]; }; dicionariosIBGE = derive2 { name="dicionariosIBGE"; version="1.6"; sha256="1rss1ydhcn6sma2lmlpq6s0h3dglwc20w499x1jzkcjnzc1rc7gl"; depends=[]; }; did = derive2 { name="did"; version="1.2.3"; sha256="05xc41491mq0v9gm841m8l3cdjhjip3z1aqjqaqpaz05rwp3bngx"; depends=[BMisc ggplot2 gridExtra knitr MASS pbapply]; }; didrooRFM = derive2 { name="didrooRFM"; version="1.0.0"; sha256="12clfnbm56jwldw0afb0nb0argnd97mx7369jiywhxy0p4xqibqq"; depends=[dplyr]; }; dief = derive2 { name="dief"; version="1.2"; sha256="1i4icdfqvw7imaj1fh392zmzfyz8aqlv9s5naqxm1pm0lqfxl6ca"; depends=[flux fmsb ggplot2 plyr]; }; dielectric = derive2 { name="dielectric"; version="0.2.3"; sha256="1p1c0w7a67zxp1cb99yinylk5r1v89mmpfybcy94ydydhydbhivk"; depends=[]; }; - dietr = derive2 { name="dietr"; version="1.0"; sha256="0wz7nvhn1c3l36kpmdv4j3ia3wp77qzjlx8rmqv7al0wpmjnxcb6"; depends=[rfishbase]; }; + dietr = derive2 { name="dietr"; version="1.1.0"; sha256="0mfp1zqmx34q09k5nbx3nlra06jpd9sym4avafxkaqsxd92avrcm"; depends=[rfishbase]; }; diezeit = derive2 { name="diezeit"; version="0.1-0"; sha256="0rq1k08byvqn99wpql7drnrcxlzcqrcxixh7bczbc8dv1hhsgk9i"; depends=[brew httr jsonlite]; }; - difNLR = derive2 { name="difNLR"; version="1.3.2"; sha256="13kzd2c96nymi27d0yladpl2fyd2sl0rlbbfk55cv5w5zlachggl"; depends=[CTT ggplot2 msm nnet plyr reshape2 VGAM]; }; - difR = derive2 { name="difR"; version="5.0"; sha256="0k0vw5l3pig514ngpvf0rwhwxc316ws352fgw49c3c95ydsz6wd8"; depends=[deltaPlotR lme4 ltm mirt]; }; + difNLR = derive2 { name="difNLR"; version="1.3.3"; sha256="0r6h0rm0g1719qv2xjmynkvgb1vd3zcbrbkjjd1x8ry5gc58gxk2"; depends=[CTT ggplot2 msm nnet plyr reshape2 VGAM]; }; + difR = derive2 { name="difR"; version="5.1"; sha256="1cd5kaal5mjrbj1l9ki2wbqasdxphgc2yhaf4xwgbh1nr2zkhr02"; depends=[deltaPlotR lme4 ltm mirt]; }; difconet = derive2 { name="difconet"; version="1.0-4"; sha256="0cjadi4mnpfmy18vyp0dw55mnhs0zddf51w59gvq6gszk145z3bq"; depends=[data_table gplots mvtnorm stringr]; }; diffEnrich = derive2 { name="diffEnrich"; version="0.1.1"; sha256="19bq2frd2h8gh6mdy3pcwd54zzv170c0m1m3wnp5c4gadb9424qf"; depends=[dplyr ggnewscale ggplot2 here reshape2 rlang stringr]; }; diffIRT = derive2 { name="diffIRT"; version="1.5"; sha256="0kip6wz9l9q80qsqwf32pwz7d9vqin6dgfwf0nxlrlzf8xjsxgim"; depends=[statmod]; }; @@ -6923,7 +7144,7 @@ in with self; { diffee = derive2 { name="diffee"; version="1.1.0"; sha256="01lb1prz70mxgymhhsvx48kbfy69xyyaabsmfhf28af9wfb89662"; depends=[igraph pcaPP]; }; diffeqr = derive2 { name="diffeqr"; version="0.1.3"; sha256="1696bxh916688zlfxbm6jaqk245xw51ar7rqz7m2nla0ibka86sj"; depends=[JuliaCall stringr]; }; diffman = derive2 { name="diffman"; version="0.1.1"; sha256="08b4kqxfg8pmyl2xg8flb581s9wnkdcy5rrmrxp8a89y265qmirx"; depends=[data_table dplyr igraph Matrix progress Rcpp sf tidyverse]; }; - diffobj = derive2 { name="diffobj"; version="0.2.4"; sha256="1nygk8qly4jypwsvxwrvgq2v9mj1d619g6qrzxk3v1bi89vqws18"; depends=[crayon]; }; + diffobj = derive2 { name="diffobj"; version="0.3.0"; sha256="12kij8qjr3qv6fagyn35vrrmc5hy3g11r6gmgkgi58971cylrj6m"; depends=[crayon]; }; diffpriv = derive2 { name="diffpriv"; version="0.4.2"; sha256="12q2v93369bshid83rsy1csbr9ay6rfpd8zdxm12zi7py3f9sjs8"; depends=[gsl]; }; diffr = derive2 { name="diffr"; version="0.1"; sha256="0ydwnpyzirynffsnvip667y0jqzy7yfqlfpqhb38xvmd9rmwfbp8"; depends=[htmlwidgets]; }; diffrprojects = derive2 { name="diffrprojects"; version="0.1.14"; sha256="1mnqf5zs1w8dx9y5iwn4blyzb9j60ayzc04zxj5l8804nd527n25"; depends=[dplyr hellno magrittr R6 Rcpp RSQLite rtext stringb stringdist]; }; @@ -6941,12 +7162,12 @@ in with self; { dinamic = derive2 { name="dinamic"; version="1.0"; sha256="0mx72q83bbwm10ayr3f1dzwr5wgz7gclw7rh39yyh95slg237nzr"; depends=[]; }; dineq = derive2 { name="dineq"; version="0.1.0"; sha256="1xrhrdc970f7hm9xng9z7xmshnmmz89cn3gmnyabzprx44ccr9sl"; depends=[boot Hmisc]; }; dint = derive2 { name="dint"; version="2.1.3"; sha256="0nxppn7gx4sjwn7jns5bwbqfid3jkbsx2lxi0rjdkbsawy77fc85"; depends=[]; }; - dipsaus = derive2 { name="dipsaus"; version="0.0.6"; sha256="1vbyzlz6ci43ckz5hl8j67fm6g34jqn2rwaq799jz0c1zz0fjlww"; depends=[base64enc base64url cli crayon digest fastmap future future_apply jsonlite progressr R6 Rcpp RcppParallel rlang shiny startup stringr synchronicity txtq]; }; + dipsaus = derive2 { name="dipsaus"; version="0.1.0"; sha256="0rf8sjwarmyv39awviswj9mqjmb4h2a39lm55zcwfm0in10hrmnr"; depends=[base64enc base64url cli digest fastmap future future_apply jsonlite progressr R6 Rcpp RcppParallel rlang rstudioapi shiny startup stringr synchronicity]; }; diptest = derive2 { name="diptest"; version="0.75-7"; sha256="0rcgycgp0bf8vhga1wwgfcz3pqs5l26hgzsgf2f97dwfna40i1p1"; depends=[]; }; directPA = derive2 { name="directPA"; version="1.4"; sha256="0rbdygdslr2gvg4mvnp09lc9rv0sg9jwdf5a5ks50v67n25x6y5d"; depends=[calibrate rgl]; }; - directlabels = derive2 { name="directlabels"; version="2020.1.31"; sha256="08s1gnwp4bn8xahwjaq0f1qzhwh2dvybzhq3z7xyzn8cnyzmis6c"; depends=[quadprog]; }; + directlabels = derive2 { name="directlabels"; version="2020.6.17"; sha256="1b6v206kizz5rjw03chjvn40a7cqihjpk80h1h79z2x27hp1qi3f"; depends=[quadprog]; }; directotree = derive2 { name="directotree"; version="1.0.0"; sha256="1yv703mb3fnvjxr2rrxvb8x869hbbjx4l94qbbsmy0ssknayq60y"; depends=[collapsibleTree data_tree]; }; - dirichletprocess = derive2 { name="dirichletprocess"; version="0.3.1.1"; sha256="1sxypnhi7pnz08ys2z0riyk7x80qg7sbilkgsz3jnpqjsal6d0ha"; depends=[ggplot2 gtools mvtnorm]; }; + dirichletprocess = derive2 { name="dirichletprocess"; version="0.4.0"; sha256="1gspaynxq5czvnpni57swcqqy17lryjlh3cn9x0mghl527rkbpna"; depends=[ggplot2 gtools mvtnorm]; }; dirmcmc = derive2 { name="dirmcmc"; version="1.3.3"; sha256="117p3jvinmha7a2phcpzq38ig05kcranp15xbxqvv0cgh3c95fjr"; depends=[mcmcse]; }; dirmult = derive2 { name="dirmult"; version="0.1.3-4"; sha256="1r9bhw1z0c1cgfv7jc0pvdx3fpnwplkxwz8j8jjvw14zyx803rnz"; depends=[]; }; disaggregation = derive2 { name="disaggregation"; version="0.1.3"; sha256="04wmwwhmcgi1cdr8iyhilsphpzb7r5xs04vhqx5z01y7cgardivx"; depends=[cowplot doParallel dplyr foreach ggplot2 maptools Matrix raster RcppEigen rgdal rgeos sp sparseMVN splancs TMB]; }; @@ -6956,20 +7177,21 @@ in with self; { discharge = derive2 { name="discharge"; version="1.0.0"; sha256="1hwsdrbajmpfdc9arb1pjhx2w45dy3zrba9ibcrnpyqhhr4i1c5m"; depends=[boot checkmate CircStats ggplot2 lmom]; }; disclap = derive2 { name="disclap"; version="1.5"; sha256="0piv9gxhxcd4pbh5qjn9c3199f32y3qiw5vy8cr77ki70dnmr66n"; depends=[]; }; disclapmix = derive2 { name="disclapmix"; version="1.7.3"; sha256="0hh20ff3szh9s9r1hdymk73ysn0v5lh2gfzgqpvfvdhcc5z8xjk7"; depends=[cluster disclap MASS Rcpp RcppProgress]; }; + discnorm = derive2 { name="discnorm"; version="0.1.0"; sha256="00dkdxvj0fmlmr9l34ajvfv1jzlnyr9sdnnpgik8lhcj5a7h8l6f"; depends=[arules lavaan MASS pbivnorm psych sirt]; }; disco = derive2 { name="disco"; version="0.6"; sha256="1abvhf0yb4mw02j1krjb7q68jpwdnl2narcalf3vkjcbflcp76z3"; depends=[ggplot2 RColorBrewer tmod]; }; discord = derive2 { name="discord"; version="0.1"; sha256="0nrjpl7l9lzkn92fwzaj3vh8zv2b6706gnh5c4zalkld0xac3c23"; depends=[dplyr]; }; discourseGT = derive2 { name="discourseGT"; version="1.0.0"; sha256="1faq344prjmya13jxpxfdq1vh1gqkssjmsq62i8lhmk8kwkp6nax"; depends=[GGally ggplot2 ggpubr igraph network]; }; - discoveR = derive2 { name="discoveR"; version="1.2.4"; sha256="0f1f4wmh4ys3awlf5kxm6l0xj2qw86y14sj03bd1gs252r43zrbg"; depends=[colourpicker DT factoextra ggplot2 rmarkdown rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyjs stringi zip]; }; + discoveR = derive2 { name="discoveR"; version="1.2.9"; sha256="0zvhg9vc5bawkfsf7sxky4zddyyjqrl741sjhlqzzmlwid7481p5"; depends=[colourpicker DT factoextra ggplot2 rmarkdown rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyjs stringi zip]; }; discreteMTP = derive2 { name="discreteMTP"; version="0.1-2"; sha256="13qsf1kc3rph0kkdkz31qj072www5dwjyk73lfpy141rzhcn1v1x"; depends=[]; }; discreteRV = derive2 { name="discreteRV"; version="1.2.2"; sha256="1lhf67cccr96zl3j1sysh2bv0pbgvkbgjdzm35fvrdm7k74ypjsi"; depends=[MASS plyr]; }; discretecdAlgorithm = derive2 { name="discretecdAlgorithm"; version="0.0.7"; sha256="01x3qfjj7dwv0m9q8zdhfrpbj9ys9y5p7d3z8ywjrqy4jw88svjs"; depends=[igraph Rcpp RcppEigen sparsebnUtils]; }; discretization = derive2 { name="discretization"; version="1.0-1"; sha256="00vq2qsssnvgpx7ihbi9wcafpb29rgv01r06fwqf9nmv5hpwqbmp"; depends=[]; }; - discrim = derive2 { name="discrim"; version="0.0.2"; sha256="0zwr0rm8qsykimsqpxv8g76fzrspkfafrf4kfqvb7z941pi65y23"; depends=[dials parsnip purrr rlang tibble withr]; }; - diseasemapping = derive2 { name="diseasemapping"; version="1.4.6"; sha256="16y2w8qjq442qdbqlrg3s2mn53rlcipl22m3q168gda5klm4f7sl"; depends=[sp]; }; - disk_frame = derive2 { name="disk.frame"; version="0.3.4"; sha256="03mm73fps4hsryk3mlw088jx2z1a75xifwbixbv4fy38xihs973j"; depends=[benchmarkme bigreadr bit64 crayon data_table dplyr fs fst furrr future future_apply globals glue jsonlite pryr purrr Rcpp rlang stringr]; }; + discrim = derive2 { name="discrim"; version="0.1.0"; sha256="16mmx499jb9ys3qn9qzg58w0v6rj2ndsgr62qv5i5jxl31sdj58w"; depends=[dials parsnip purrr rlang tibble withr]; }; + diseasemapping = derive2 { name="diseasemapping"; version="1.4.9"; sha256="0mhi3v52s57pd85li27cb5krvy40icghkayalhihg5k7zxqkgssv"; depends=[sp]; }; + disk_frame = derive2 { name="disk.frame"; version="0.3.7"; sha256="12g9anjy04km8iyypf56nsq6v8mqfp99j0gfi9v8pc3sd6k9vnfn"; depends=[benchmarkme bigreadr bit64 crayon data_table dplyr fs fst furrr future future_apply globals glue jsonlite pryr purrr Rcpp rlang stringr]; }; diskImageR = derive2 { name="diskImageR"; version="1.0.0"; sha256="1r19k5fdjn6vkn11p5df77fnxfqaz3nciiaai0f3pr2bgpfppzka"; depends=[subplex zoo]; }; dismo = derive2 { name="dismo"; version="1.1-4"; sha256="1j4pzbyvn8msi3k2y79nc6pqlrald46168ibznjwrr6rdiqhy4gj"; depends=[raster sp]; }; - dispRity = derive2 { name="dispRity"; version="1.3.5"; sha256="1nn2bqjs0krib5z7m1mlpv5rwwv7m85vbdfz2rszx4rbfvg1nbkr"; depends=[ade4 ape Claddis geiger geometry geoscale mnormt phangorn phyclust vegan]; }; + dispRity = derive2 { name="dispRity"; version="1.4.1"; sha256="17q8w25dm7rmnh42rwpiygbpsqqpz462snc28zrabakjm16gdd4d"; depends=[ade4 ape castor Claddis geiger geometry geoscale mnormt phangorn phyclust vegan]; }; disparityfilter = derive2 { name="disparityfilter"; version="2.2.3"; sha256="0dkk3qws631mf0g02di5rsrvh5954cykysyri0g8aqgik0j9dg06"; depends=[igraph]; }; displayHTS = derive2 { name="displayHTS"; version="1.0"; sha256="0mqfdyvn2c5c3204ykyq29ydldsq0kb3a1d7mrzqr7cvrj1ahlqa"; depends=[]; }; dispmod = derive2 { name="dispmod"; version="1.2"; sha256="16r6is0pchzc9mxpz0c44f72j76vsh3j9damalcxajrha06dkdq4"; depends=[]; }; @@ -6985,12 +7207,12 @@ in with self; { distdichoR = derive2 { name="distdichoR"; version="0.1-1"; sha256="0v19m3n1jgipg65yrv75rm4v27b5aq58cbsmbp7lxvfxmj5ra328"; depends=[boot emmeans nlme sn]; }; distdrawr = derive2 { name="distdrawr"; version="0.1.3"; sha256="1c8wznfml8k5gwyanfg7rqr22a96xx8rgm7f4z3bv5gsgsbps49y"; depends=[]; }; distfree_cr = derive2 { name="distfree.cr"; version="1.5.1"; sha256="0h7cywxnasxmqnl9f2f9wp4viwvv72hjx2drr78prqy3nn3lvqwx"; depends=[]; }; - distill = derive2 { name="distill"; version="0.7"; sha256="111i58s7c9q317ypnpxm1gzc8ssb3751yr4l4j1wyjv49l72sayi"; depends=[base64enc bookdown digest downloader htmltools jsonlite knitr lubridate mime png progress rmarkdown rprojroot rstudioapi stringr whisker xfun xml2 yaml]; }; - distillery = derive2 { name="distillery"; version="1.0-7"; sha256="0w72vb3p51m0hwms9icwgy1xg3dplmpjrxibl2s92lpdrv737249"; depends=[]; }; + distill = derive2 { name="distill"; version="0.8"; sha256="0crih4x2745aq0w2fqrzcnbw82yi2pxcx8j2hv0fi5yfvgjjsi86"; depends=[base64enc bookdown digest downloader htmltools jsonlite knitr lubridate mime openssl png progress rmarkdown rprojroot rstudioapi stringr whisker xfun xml2 yaml]; }; + distillery = derive2 { name="distillery"; version="1.1"; sha256="15qhvhg6wmvlxrvvw70sk8pv76z5pd04vyasgczvxa0599ih7bzh"; depends=[]; }; disto = derive2 { name="disto"; version="0.2.0"; sha256="09pafy8y1ifgglqmal32dy34acx06ypsq2bgwsn6fjiqr9kw401j"; depends=[assertthat broom dplyr factoextra fastcluster fastmatch ggplot2 pbapply proxy tidyr]; }; distory = derive2 { name="distory"; version="1.4.4"; sha256="1ljrs91h4v1h5lb295hjki8bmra2lg3d1bn5x731pnv43pf3ck06"; depends=[ape]; }; distr = derive2 { name="distr"; version="2.8.0"; sha256="1dyff4m33xmw6hxb3jxzr8vvajg3qz3rfcrfxjxwsswlddfz0zdv"; depends=[MASS sfsmisc startupmsg]; }; - distr6 = derive2 { name="distr6"; version="1.3.6"; sha256="133vk8n21icdacwb2f5mq1rgnxz2gy11mqirlw55srzamy9mwdfw"; depends=[checkmate data_table R6 R62S3 set6]; }; + distr6 = derive2 { name="distr6"; version="1.4.2"; sha256="13l7rg1c2lj1yrnzm813cma1c7hj23dbmlf0cv7bmwh48m3xjdck"; depends=[checkmate data_table R6 R62S3 Rcpp set6]; }; distrDoc = derive2 { name="distrDoc"; version="2.8.0"; sha256="1iq2gbfbsf3h279yh3fnqsi39gdw15vc6r1g33xcb8kgmmqmvf0p"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg]; }; distrEllipse = derive2 { name="distrEllipse"; version="2.8.0"; sha256="1ymfa8xpgs8zjp4psiwmll5z0vji496fivxmcavspzxy31cw70wx"; depends=[distr distrEx distrSim mvtnorm setRNG startupmsg]; }; distrEx = derive2 { name="distrEx"; version="2.8.0"; sha256="1gwhsnlrnzyp2x97d9wfdy5pa9z3q5il934wjv4kxs9wsvkwsr5h"; depends=[distr startupmsg]; }; @@ -7000,15 +7222,18 @@ in with self; { distrTEst = derive2 { name="distrTEst"; version="2.8.0"; sha256="06rdcwfgbhc81zqisg414nj0kji59xvhm782b63hk54a8b2zwhh5"; depends=[distrSim setRNG startupmsg]; }; distrTeach = derive2 { name="distrTeach"; version="2.8.0"; sha256="1qgkd4yipk29q8k334fz97n6dxlxnsback7v5a05m6ragc37wzag"; depends=[distr distrEx startupmsg]; }; distreg_vis = derive2 { name="distreg.vis"; version="1.7.0"; sha256="1rfv4ifhai6ig0x2xwca1pjin8vqp8k8jvbmj45rxdzg8b384zly"; depends=[bamlss betareg formatR gamlss gamlss_dist ggplot2 magrittr rhandsontable shiny]; }; + distributional = derive2 { name="distributional"; version="0.2.0"; sha256="1l192mc7fwyzvm6ykbbnv0rvk6b29wxsgnshv4zfi9dgz5hwgj4l"; depends=[digest ellipsis farver generics ggplot2 lifecycle numDeriv rlang scales vctrs]; }; distributions3 = derive2 { name="distributions3"; version="0.1.1"; sha256="06wfyn37x2r00szfzgjpcxy5fhx72p2pf44llpymcsjyp8k790na"; depends=[ellipsis glue]; }; + distributionsrd = derive2 { name="distributionsrd"; version="0.0.6"; sha256="0ykzxcxh5l9l5z3546iqlllryw2xyixz1hiynx19k8bsn8k7dxyp"; depends=[flexmix modeltools Rdpack]; }; distrom = derive2 { name="distrom"; version="1.0"; sha256="0wylw7yaylf5j8cy8g45jrw91mwx6w0i7vf9ysnj5kxyznq1gl6y"; depends=[gamlr Matrix]; }; - distrr = derive2 { name="distrr"; version="0.0.5"; sha256="06zmknpdldh4yy3gd1ki6p856pwllb605z1142j4kqxj2ni3lkq7"; depends=[dplyr magrittr rlang tidyr]; }; + distrr = derive2 { name="distrr"; version="0.0.6"; sha256="04lhrc92y6dqnfpqlmynjvn2dndzkknnvwsr5pf73dfpgv7n3s1f"; depends=[dplyr magrittr rlang tidyr]; }; disttools = derive2 { name="disttools"; version="0.1.7"; sha256="1wdcggphyxy58zyqdsyz2z3q4rb69wady63l79s1ivjwzgjrsxmi"; depends=[]; }; + dittodb = derive2 { name="dittodb"; version="0.1.1"; sha256="16lp6h6612lk8cp65wm9ajbmr441xn7qhp9cff9kpy223zkdxfsf"; depends=[DBI digest glue testthat]; }; divDyn = derive2 { name="divDyn"; version="0.8.0"; sha256="11crhrcx38kn5d8ap2ijrn305369adg73iz5i7a4a7gmgizmmwyd"; depends=[Rcpp]; }; divagis = derive2 { name="divagis"; version="1.0.0"; sha256="1kcz7i3h9xxpqhlq0rl08pgcwd16ygjjmm0jjv9knn2ggc3j1jzz"; depends=[rgdal sp]; }; - diveMove = derive2 { name="diveMove"; version="1.4.5"; sha256="0lik5r5y7q5r7gh9d9y9r2m8vvibn13dp9p50j0hpzk67wgw3vya"; depends=[geosphere KernSmooth quantreg uniReg]; }; + diveMove = derive2 { name="diveMove"; version="1.4.6"; sha256="1208syawp3g4w7jn17zlhqbmpcgbni1b8xpsjh6ml0b1dmb40blj"; depends=[geosphere KernSmooth quantreg uniReg]; }; diveRsity = derive2 { name="diveRsity"; version="1.9.90"; sha256="11pfq3syvjmfwfimjc2jnlprcnynvargr4yjd8h0aa6qzgdrrx5q"; depends=[ggplot2 qgraph Rcpp shiny]; }; - diverge = derive2 { name="diverge"; version="1.0.3"; sha256="0vpmlfarl9h4wymz0q4kclbycia4j6a5bclpjdbz1hac4ciw7nih"; depends=[truncnorm]; }; + diverge = derive2 { name="diverge"; version="1.0.4"; sha256="18abm3348rkd4k2hyf8nykpis1m0ga16d4nprdc5xjj2ciaf2xa5"; depends=[truncnorm]; }; diverse = derive2 { name="diverse"; version="0.1.5"; sha256="10kmx3qv58xhqs1icsxqq0y0cm8y2hx9ysb65brd3hhg33alzvk3"; depends=[foreign proxy reshape2]; }; diversitree = derive2 { name="diversitree"; version="0.9-13"; sha256="00vi4klywi35hd170ksjv3xja3hqqbkcidcnrrlpgv4179k0azix"; depends=[ape deSolve Rcpp subplex]; }; diversityForest = derive2 { name="diversityForest"; version="0.2.0"; sha256="16qwmz6fmh7jxypp5myj55fx6fwzzm2mq59v30spp2c2zd89aya7"; depends=[Matrix Rcpp RcppEigen]; }; @@ -7016,31 +7241,35 @@ in with self; { divo = derive2 { name="divo"; version="1.0.1"; sha256="06c4kjl6llvvdr2gk480jcmj2abmqwph7x4vk5nflxm7piimvg7v"; depends=[cluster]; }; dixon = derive2 { name="dixon"; version="0.0-6"; sha256="1prvr16a9n7qyaznir2bl7mg6nlvbdv9pk75p3xipzjg36hwyam8"; depends=[spatstat splancs]; }; dixonTest = derive2 { name="dixonTest"; version="1.0.2"; sha256="04d66nf47mllk5madqn6k36vc1gq2syp7kbif8cnf6imxr98xx50"; depends=[]; }; - diyar = derive2 { name="diyar"; version="0.0.3"; sha256="1m4rs6q3gwpl9v62cmam3z207wsy2z2xr2dhxdqzggq8yk6qc83q"; depends=[dplyr lubridate rlang tidyr]; }; + diyar = derive2 { name="diyar"; version="0.1.0"; sha256="0cpxilixbdqzmq8lyh4iilccsjg07x7bl6x93cria0rivm9aqb92"; depends=[dplyr]; }; dkDNA = derive2 { name="dkDNA"; version="0.1.1"; sha256="0ycyzn5bmhjl5idp0lndffkninpm9n23wrkrzi59ac8z8ghsnhf4"; depends=[]; }; dkanr = derive2 { name="dkanr"; version="0.1.3"; sha256="1zic7qhwq3s9w70zi1f6qyf7pzm69k5a1p5fd4n3z4nbga54njxd"; depends=[assertthat dplyr httr jsonlite purrr stringr tibble]; }; dlbayes = derive2 { name="dlbayes"; version="0.1.0"; sha256="058kkh67npai2ffrjdpjn4pzj8f233znl16nj6yx8wz8lkb17cb0"; depends=[expm GIGrvg glmnet LaplacesDemon MASS]; }; dlib = derive2 { name="dlib"; version="1.0.3"; sha256="1is8j1gwf22n7yixg40rb6p4mrnbzijwfjl6vsniq8qkyy7z8k32"; depends=[Rcpp]; }; dlm = derive2 { name="dlm"; version="1.1-5"; sha256="1aksm66sfa7ipl5xgs4j5giac7q2m744wjl40mva56xn6i674h4r"; depends=[]; }; dlmap = derive2 { name="dlmap"; version="1.13"; sha256="0s6wlkggkm3qndwyvw72xv1n0mcjb7ss3ajbq2ll6rv30splq0db"; depends=[ibdreg mgcv nlme qtl wgaim]; }; - dlnm = derive2 { name="dlnm"; version="2.3.9"; sha256="0vbrp9x7n94wjrigw124i3i7szy0bsh4sdggi8nsizn2ccsv5pnq"; depends=[mgcv nlme tsModel]; }; + dlnm = derive2 { name="dlnm"; version="2.4.2"; sha256="1phn8xci456zx3jcjvy99ycki3gkzc4id0c45c37mdddxvk1bwmg"; depends=[mgcv nlme tsModel]; }; dlookr = derive2 { name="dlookr"; version="0.3.13"; sha256="1i1aiy4v3bvlrz0w0hc5qlv5flqgzbgavqmaql6bc8nz5s9p071s"; depends=[classInt corrplot DMwR dplyr ggplot2 gridExtra kableExtra knitr magrittr mice moments prettydoc purrr RcmdrMisc RColorBrewer rlang rmarkdown rpart smbinning tibble tidyr tidyselect tinytex xtable]; }; dlsem = derive2 { name="dlsem"; version="2.4.6"; sha256="1h3bwqqpfjkl41b2mbfhsj0pi9kri0h0i28wiid6arjrmm87nsf8"; depends=[graph Rgraphviz]; }; dlstats = derive2 { name="dlstats"; version="0.1.3"; sha256="0inij1rzw8i683lyzvnjhfzrng7zx727y9wcijv6ny2fw64cdd6n"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; }; - dm = derive2 { name="dm"; version="0.1.1"; sha256="15268znsb90ndpq7x55lb7brg67ydshki8mc6b53c5y6b8icl5mr"; depends=[backports cli DBI dplyr DT glue igraph lifecycle magrittr pillar purrr rlang tibble tidyr tidyselect vctrs]; }; + dm = derive2 { name="dm"; version="0.1.6"; sha256="0cc153d5kl9qx2nazc0k85xj5kww63xjkppkj0nj0gag22bsscg7"; depends=[backports cli DBI dplyr ellipsis glue igraph lifecycle magrittr memoise pillar purrr rlang tibble tidyr tidyselect vctrs]; }; dma = derive2 { name="dma"; version="1.4-0"; sha256="003snr09hazszwqnvjrbv8vyz6ihgcfcfhrlshg451dddn920615"; depends=[MASS]; }; dmacs = derive2 { name="dmacs"; version="0.1.0"; sha256="1prw6h8sj6fcpajg6xwqhi8v5jfl74mbjdjrdy524miw56fh9h0r"; depends=[lavaan MplusAutomation]; }; dmai = derive2 { name="dmai"; version="0.4.0"; sha256="0ma89jl0l598sffpikvjj40f2djjcnjq29k6y1bav4dm2g51qgmq"; depends=[dplyr ggplot2 magrittr stringr tibble tidyr]; }; - dmdScheme = derive2 { name="dmdScheme"; version="1.1.0"; sha256="1s1s16jjfmlwg29wsszmnr3a70sx5gij8gi4ign2rmgwiiyfi7ra"; depends=[digest knitr magrittr openxlsx rappdirs readxl rlang rmarkdown writexl xml2 yaml]; }; + dmbc = derive2 { name="dmbc"; version="0.4.0"; sha256="1m8zwy18phlxpmlp8rf07d615fjg15gqs5wdfm78d49266032jay"; depends=[abind bayesplot coda ggplot2 ggrepel MCMCpack modeltools pcaPP Rcpp RcppArmadillo RcppProgress robustbase]; }; + dmdScheme = derive2 { name="dmdScheme"; version="1.2"; sha256="13yfpjl6qmvrwvyvymkcp1yppicghwcw1lddz68w6l9ncsjr4fbi"; depends=[digest EML knitr magrittr openxlsx rappdirs readxl rlang rmarkdown stringr writexl xml2 yaml]; }; dml = derive2 { name="dml"; version="1.1.0"; sha256="0z1dalgxh5nhrac49vh60d5awzjylc8b8mn5fk379c324milm59l"; depends=[lfda MASS]; }; - dmm = derive2 { name="dmm"; version="2.1-5"; sha256="1i94bsgc12ysivpy9mdmzcdfki1f84x036danki7ynrbym2b3c7a"; depends=[MASS Matrix nadiv pls robustbase]; }; + dmm = derive2 { name="dmm"; version="2.1-6"; sha256="0y955dlfdpr6shfjwa96p4f9i9z9bq5jahp3k75fzyzyl7d9lvsj"; depends=[MASS Matrix nadiv pls robustbase]; }; dmt = derive2 { name="dmt"; version="0.8.20"; sha256="0rwc8l9k2y46hslsb3y8a1g2yjxalcvp1l3v7jix0c5kz2q7917w"; depends=[MASS Matrix mvtnorm]; }; + dmtools = derive2 { name="dmtools"; version="0.2.4"; sha256="0dyyl5lx4m2nwcvj2xzx12bl6sclsxmkas70k2s9zx4z1zrmsfh0"; depends=[dplyr lubridate magrittr purrr readxl]; }; dmutate = derive2 { name="dmutate"; version="0.1.2"; sha256="06gr49j5jz6ns1zydwsqysgkigi2sbm4hdd2jbb82f05rd9spyf3"; depends=[dplyr MASS]; }; + dna = derive2 { name="dna"; version="2.1-2"; sha256="0l7i9640yd25cbxd3vbmlsqgk3pi2f7v6g5q0lrgycxl7jla9v1k"; depends=[]; }; + dnapath = derive2 { name="dnapath"; version="0.6.4"; sha256="0vhqpy8ps8id6vv6bdhc80kwnqzwffq1hbc5vxnxr9iqf1a1rg39"; depends=[biomaRt corpcor curl dplyr ggplot2 igraph Rcpp RcppArmadillo Rdpack reactome_db SeqNet tibble]; }; dnet = derive2 { name="dnet"; version="1.1.7"; sha256="05mqgp8x2h6vjf8j9466kpng7bbga134c2y808qgdmjdnv9fcaxc"; depends=[graph igraph Matrix Rgraphviz supraHex]; }; dng = derive2 { name="dng"; version="0.2.1"; sha256="0yi1fs4yvlsy3j128l7s5kwq8mhdd5fr74y2bzj7cjrxi7wgz2hg"; depends=[Rcpp]; }; dnr = derive2 { name="dnr"; version="0.3.4"; sha256="0hzaa308pppq2cqpb067f3y3nyv1p2xdmgy3dykf90psnn5v011p"; depends=[arm ergm glmnet igraph network sna]; }; - do = derive2 { name="do"; version="1.2.0.0"; sha256="093rgvwhfsgv3qmc78p69il9zk12xzzbq14dfy4x79318jaz42wh"; depends=[data_table plyr tmcn]; }; - doBy = derive2 { name="doBy"; version="4.6.5"; sha256="1ckazh701b4ilg8bj17ji903538jmb49d997gm49ah5j5jc1x0g7"; depends=[broom Deriv dplyr magrittr MASS Matrix pbkrtest plyr tibble]; }; + do = derive2 { name="do"; version="1.4.0.0"; sha256="0hcwv8vrn7a1k8f7i9izyc84150jp5rndbzfa1fa8fnn34nb8vb3"; depends=[data_table plyr tmcn]; }; + doBy = derive2 { name="doBy"; version="4.6.7"; sha256="16vg1aa272sfzyqxfb63fyis9hv6g5m3nmxxa6mk1gy0irqnl3jk"; depends=[broom Deriv dplyr ggplot2 magrittr MASS Matrix pbkrtest tibble]; }; doFuture = derive2 { name="doFuture"; version="0.9.0"; sha256="1sfymhgjph1xrw49dxyc2slxxgal7v4yanklr4zql7r4vqinhk19"; depends=[foreach future globals iterators]; }; doMC = derive2 { name="doMC"; version="1.3.6"; sha256="1cn9gxavhvjswip8pwvkpi7q6wpzdllcsdjabga8akf55nggqxr9"; depends=[foreach iterators]; }; doMPI = derive2 { name="doMPI"; version="0.2.2"; sha256="0ahwm17p3gq1yvc8v6sr6sb8z7i6zws8d1pf46qynl0gd4amg938"; depends=[foreach iterators Rmpi]; }; @@ -7050,18 +7279,22 @@ in with self; { doSNOW = derive2 { name="doSNOW"; version="1.0.18"; sha256="0rj72z5505cprh6wykhhiz08l9bmd966srqh2qypwivf321bvrvh"; depends=[foreach iterators snow]; }; dobin = derive2 { name="dobin"; version="1.0.2"; sha256="1vhvwdl7a8bf4q64jz8a6afm3smdn3jgxvs17jjlilarpdazl3p5"; depends=[pracma RANN]; }; dobson = derive2 { name="dobson"; version="0.4"; sha256="0xfn7s3wzrv1md40bdjrnjfiqyxg5c6lrcpnvayjdgrhxq161hhq"; depends=[]; }; + doc2concrete = derive2 { name="doc2concrete"; version="0.4.6"; sha256="1a3j8bm9n40jiahc60wviblw1yry2rgc34jpr5qp54gfpjr1bigm"; depends=[dplyr english ggplot2 glmnet quanteda SnowballC stringr textclean textstem tm]; }; + docdescriptR = derive2 { name="docdescriptR"; version="2020.1.0"; sha256="02sgbzhvjayf39r5lrx3krihzm263fnvwpjqm0jsqrq4d8pps3hb"; depends=[broom DescTools dplyr flextable magrittr nortest officer plotrix Rdpack tictoc]; }; + docinfeR = derive2 { name="docinfeR"; version="2020.1.0"; sha256="08xa3f27giad3fikk8jywpm2p843zlb8a9znq3x47x6ivwybfllp"; depends=[broom flextable nortest officer Rdpack tictoc]; }; dockerfiler = derive2 { name="dockerfiler"; version="0.1.3"; sha256="128648s9lj96p3nlxwy4gs108w5kjcg6w48nfx3r52gb8w2z7948"; depends=[attempt glue R6]; }; docknitr = derive2 { name="docknitr"; version="1.0.1"; sha256="1mhdjv6yznzyx911f0m3m0i7jlzj7h12ikkxb9b6zj68bdplv30b"; depends=[knitr rstudioapi sys]; }; - docopt = derive2 { name="docopt"; version="0.6.1"; sha256="06zknnd0c5s2y0hbddzdlr3m63ib783izpck6pgz7sjbab5pd068"; depends=[]; }; + docopt = derive2 { name="docopt"; version="0.7.1"; sha256="1zxhwizs916qm5by7nfslqnarl2q5202xc2azlhrnzk0wj3khiwz"; depends=[]; }; docopulae = derive2 { name="docopulae"; version="0.4.0"; sha256="186mfiy4ygx6spnv7yrm5h0k6nf2g1xhk1l05iij39j5al5d9j21"; depends=[]; }; docstring = derive2 { name="docstring"; version="1.0.0"; sha256="19z5frhxbdc5c4vrkckgqbh9mx4d9w1icw8szsw9yadvbg48nlhl"; depends=[roxygen2]; }; docuSignr = derive2 { name="docuSignr"; version="0.0.3"; sha256="0q90z31svbdnvylfr0yj2f0gahvpi089c1d5llvwqy8qc5p9fbqw"; depends=[httr jsonlite magrittr]; }; documair = derive2 { name="documair"; version="0.6-0"; sha256="1pphcbx90n9xn8a7gvfrwzfapwqgpbl3gg2grm7chfxgcp7i99i2"; depends=[]; }; document = derive2 { name="document"; version="3.2.0"; sha256="0k1sqh9sn9lvv8r05byicrhg07jfnas8h9pyij42pgdvy93rinvy"; depends=[callr checkmate desc rcmdcheck roxygen2 rstudioapi withr]; }; documenter = derive2 { name="documenter"; version="0.1.1"; sha256="0y6zrvmb9bhc1ni4v89h9pq5ara8p2v4b35ylasia5s9x1y93mcp"; depends=[htmltools magrittr officer xml2 yaml]; }; - docxtools = derive2 { name="docxtools"; version="0.2.1"; sha256="09fcamrr3yw1zrj4bx8ra9yidprk1h44p48by85zjqwd1ly4gqbf"; depends=[dplyr ggplot2 lubridate purrr rlang stringr tidyr]; }; - docxtractr = derive2 { name="docxtractr"; version="0.6.1"; sha256="03bcaiwxxybbdxh26rp4bl66aiv4hxmgn21w6dxm383xha03iqfw"; depends=[dplyr httr magrittr purrr xml2]; }; - dodgr = derive2 { name="dodgr"; version="0.2.6"; sha256="0fy7dd4gi1kymmlipz5xgl9sx9m7rybhqm6jjjj36bjmik90g675"; depends=[callr digest magrittr osmdata Rcpp RcppParallel RcppThread]; }; + docxtools = derive2 { name="docxtools"; version="0.2.2"; sha256="0ds8qy21x7cq9qmnn6gggzf8kxdphq7nf2mx5gqx829zgkripsfq"; depends=[dplyr ggplot2 lubridate purrr rlang stringr tidyr]; }; + docxtractr = derive2 { name="docxtractr"; version="0.6.5"; sha256="1kki49g0sfhbx2d4swrkv21akws8ayrsd4h3v148xmzdlsrvhhiw"; depends=[dplyr httr magrittr purrr xml2]; }; + dodgr = derive2 { name="dodgr"; version="0.2.7"; sha256="0484bcbgzciwhb5afpcnygqr2pmf7wq9kxm73y137gjwgijqgg0g"; depends=[callr digest magrittr osmdata Rcpp RcppParallel RcppThread]; }; + doebioresearch = derive2 { name="doebioresearch"; version="0.1.0"; sha256="1rmvb6pa71frvjszpsjaw3ahm70kyykrq6zfjqk8smgcg397k9pi"; depends=[agricolae]; }; doex = derive2 { name="doex"; version="1.2"; sha256="1r999z30ipa04pgck0hfalqxihb1bj8sdhlkkhf4plb7maaz3qm3"; depends=[]; }; dominanceanalysis = derive2 { name="dominanceanalysis"; version="1.3.0"; sha256="0850z2ppdgbfwbv8l40ngl00n4mdj4ciky1g918zazd3jrg88s38"; depends=[]; }; domino = derive2 { name="domino"; version="0.3.1"; sha256="0f67w0z5jy82kgm3l1rji430ayigw30vmmwp3i1nz0xibsx7jxv4"; depends=[]; }; @@ -7076,10 +7309,10 @@ in with self; { dotenv = derive2 { name="dotenv"; version="1.0.2"; sha256="13i8dimrgq9nxmmrxr42pacsiylj6dilwpa8ldnrfp4cl9zgrqas"; depends=[]; }; dotwhisker = derive2 { name="dotwhisker"; version="0.5.0"; sha256="034pvkc59jdjl27wirgb2cv84ajw5y2if20njzzp87nd4f9bb6br"; depends=[broom dplyr ggplot2 ggstance gtable purrr rlang stringr]; }; doubcens = derive2 { name="doubcens"; version="1.1"; sha256="1hn65n67by3xqbcnaf5jja5pli0g6wpbbz2sfzd7i2nms7kiywhp"; depends=[]; }; - double_truncation = derive2 { name="double.truncation"; version="1.4"; sha256="190fwl119ycmiszkq0mqc6dh8adwqx7b0ipmhz71qvqdzgh9gjm9"; depends=[]; }; + double_truncation = derive2 { name="double.truncation"; version="1.5"; sha256="09r3f11fi8c9kc9fzgzq6k4kjc82r3s0sgzp3ffdqrc47jhyl279"; depends=[]; }; + doubt = derive2 { name="doubt"; version="0.1.0"; sha256="16avp0f7ks2zd4ckakvfm57zng2jk0fg3fz6vbm05lzhqymh6y30"; depends=[unglue]; }; downloader = derive2 { name="downloader"; version="0.4"; sha256="1axggnsc27zzgr7snf41j3zd1vp3nfpmq4zj4d01axc709dyg40q"; depends=[digest]; }; - downloadthis = derive2 { name="downloadthis"; version="0.1.3"; sha256="187vgc9rmqq8iqqyqc79rd5q0ccnfs65794gs2pna1ma94ahcxc4"; depends=[base64enc bsplus fs htmltools magrittr mime purrr readr rmarkdown writexl]; }; - downscale = derive2 { name="downscale"; version="3.0-1"; sha256="0kmv4d5fa6mmhmbfqfxzk1gv55j15d7madsdqi8470bwh0kkya4y"; depends=[cubature minpack_lm raster Rmpfr sp]; }; + downloadthis = derive2 { name="downloadthis"; version="0.2.0"; sha256="0xvkznvk21gpycsnrra9af31apiv36g4s6c9r0c9vdsq4c93dpxd"; depends=[base64enc bsplus fs htmltools magrittr mime readr writexl zip]; }; downscaledl = derive2 { name="downscaledl"; version="1.0"; sha256="0lqxngzpxj65b48j5w0n8dg6fp4lgg5zpgxc2wj6d9wh5f97l71b"; depends=[dplyr keras magrittr raster Rcpp RcppArmadillo rgdal rstack sp tensorflow]; }; downsize = derive2 { name="downsize"; version="0.2.2"; sha256="18b9shd79z0bsdnp0apqqwv6c73j4wnfiv41ywqz761nmxbldxbn"; depends=[magrittr R_utils]; }; dpa = derive2 { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; }; @@ -7087,27 +7320,28 @@ in with self; { dpcid = derive2 { name="dpcid"; version="1.0"; sha256="1gx8gyrxvm07mjiasl0b80y0x3crq6gy170v6s817d11jw44n86z"; depends=[]; }; dplR = derive2 { name="dplR"; version="1.7.1"; sha256="1df4g9zz47h0flx5ww6bvlm364q81l2c5flzpa985sv87rq6cz4j"; depends=[digest lattice Matrix matrixStats plyr png R_utils signal stringi stringr XML]; }; dplRCon = derive2 { name="dplRCon"; version="1.0"; sha256="10xnawgnhxp5y949fxs1vvadc1qz2ldy0s9w9w7kf6iqh59d35sw"; depends=[]; }; - dplyr = derive2 { name="dplyr"; version="0.8.5"; sha256="0602b4a9nffxx67q57csqp87nkrv33nn9wlaw1458yys9fzx6l2p"; depends=[assertthat BH ellipsis glue magrittr pkgconfig plogr R6 Rcpp rlang tibble tidyselect]; }; + dplyr = derive2 { name="dplyr"; version="1.0.2"; sha256="0jnw18nw20gw3jvq3kvkf9mqn6b7mvgmys8g6350k5jwpygk5cbw"; depends=[ellipsis generics glue lifecycle magrittr R6 rlang tibble tidyselect vctrs]; }; dplyr_teradata = derive2 { name="dplyr.teradata"; version="0.3.2"; sha256="1pq630hlvpfrhaxqn6yh0kgapgibrnbic78g130d40visak60j1p"; depends=[bit64 DBI dbplyr dplyr odbc rstudioapi]; }; dplyrAssist = derive2 { name="dplyrAssist"; version="0.1.0"; sha256="1lqizh70b1apyr4578917gv6s0i7p84ak96a57kvwipmh36a4ywn"; depends=[DT magrittr miniUI plyr rstudioapi shiny shinyAce shinyWidgets stringr tidyr tidyverse]; }; dpmr = derive2 { name="dpmr"; version="0.1.9"; sha256="1cnjywkvjb4fhbf4shjmsrq47f1fg2x21hcm1q5512bm0wg9i6jd"; depends=[digest httr jsonlite magrittr rio]; }; dppmix = derive2 { name="dppmix"; version="0.1.1"; sha256="1gq51kix0jln25gr6bffzdy24fhn6cd3gmyl3jlmvqvni4vwswy7"; depends=[mvtnorm]; }; dprint = derive2 { name="dprint"; version="0.0.4"; sha256="13bq6yjlp5p5rcsz684rqcigp42xnz3p5phnqmrhzm874gfzm8rj"; depends=[]; }; + dpseg = derive2 { name="dpseg"; version="0.1.1"; sha256="19k7w6ln72qriwxdjx9a9cxpxbkqqja69r17zpwxz6qkw60ly4z9"; depends=[Rcpp]; }; dqrng = derive2 { name="dqrng"; version="0.2.1"; sha256="0rp8q5zijlvaqmpnkwr314w9w40sj4fz7sqsdgsffcfvn42w2jg1"; depends=[BH Rcpp sitmo]; }; - dqshiny = derive2 { name="dqshiny"; version="0.0.3"; sha256="1fra6fbv8if7wwr8vi3261rdzv4kj99y841lb9xiv1mh72r3mx58"; depends=[htmltools shiny]; }; dr = derive2 { name="dr"; version="3.0.10"; sha256="0dmz4h7biwrn480i66f6jm3c6p4pjvfv24pw1aixvab2vcdkqlnf"; depends=[MASS]; }; dr4pl = derive2 { name="dr4pl"; version="1.1.11"; sha256="0vv3h4sxw38grhr70s28sxkca20adnqdmpp8qqwlbr3dw950yaa3"; depends=[ggplot2 Matrix matrixcalc Rdpack tensor]; }; - dragon = derive2 { name="dragon"; version="0.2.1"; sha256="1y2dav9151zdcqw1maxhh3s4c1syk5rs8yb8grx8xkffvg5123w7"; depends=[broom colorspace colourpicker cowplot DT igraph magrittr RColorBrewer shiny shinyBS shinydashboard shinythemes shinyWidgets tidyverse visNetwork]; }; + dracor = derive2 { name="dracor"; version="0.2.2"; sha256="1l3972q7blif2jgya1lmppzg5nrs78wghqqj857mzgdw4k8pizs5"; depends=[Rcpp]; }; + dragon = derive2 { name="dragon"; version="1.0.1"; sha256="1y5ymnc5aacbf69zayxzwdvkw8gxi08rai4mgdrvmqnr5mkxw1c6"; depends=[broom colorspace colourpicker config cowplot curl dplyr DT future ggforce ggplot2 golem htmltools igraph lubridate magrittr openxlsx promises purrr RColorBrewer readr rvest shiny shinydashboard shinyWidgets stringr tibble tidyr tidyselect visNetwork xml2]; }; dragonking = derive2 { name="dragonking"; version="0.1.0"; sha256="01b01wd1s2b8sa9f0kfbf2pbzhaqra7xxskigqh3vlj389xqm1id"; depends=[]; }; dragulaR = derive2 { name="dragulaR"; version="0.3.1"; sha256="1cw5v7m1b4pxsizsjb3zdzhydxj577p6q5fcjklsvpzmiixzlyav"; depends=[htmlwidgets shiny shinyjs]; }; - drake = derive2 { name="drake"; version="7.12.0"; sha256="1whiw94qmmwf0q3kl2r6qh759zmrfzm39ba3yciillykc8xqmnkh"; depends=[base64url digest igraph rlang storr txtq vctrs]; }; - drat = derive2 { name="drat"; version="0.1.5"; sha256="0i80c4hyclwnq8g8amvdid9pwr11mwbscwydaxmvbrbhv3qzjg6d"; depends=[]; }; + drake = derive2 { name="drake"; version="7.12.4"; sha256="02pq2xy0s8kdhd018rwvpgpaq839y7zhzrv6fp64h3cnrc00xcym"; depends=[base64url digest igraph rlang storr tidyselect txtq vctrs]; }; + drat = derive2 { name="drat"; version="0.1.8"; sha256="0dl52xxfy07ha3c945da1cna9m5cnidm9y4n46h6ysvcrq75wsyk"; depends=[]; }; draw = derive2 { name="draw"; version="1.0.0"; sha256="0kbz8rcgygl4fhmljzaan5jl7wjvfljcaykm7q9lw9s6m78p06gz"; depends=[]; }; drc = derive2 { name="drc"; version="3.0-1"; sha256="0c8xn8ripzq270hy8d16fcnx02l02alddznd7fqwk3jyi6113h1y"; depends=[car gtools MASS multcomp plotrix scales]; }; - dreamerr = derive2 { name="dreamerr"; version="1.0.0"; sha256="1ri5krfkk538x0afgs6jqv34sg3vad4dn2r395iivixpd77swvg1"; depends=[Formula]; }; + dreamerr = derive2 { name="dreamerr"; version="1.2.0"; sha256="00p8vq3zhqdwk3pyg7vx848c9k8rby2v2j7jkv445gj9wjy6ylbd"; depends=[Formula]; }; + drf = derive2 { name="drf"; version="1.0.0"; sha256="1ja9f1g5afijcdp480zj6l0ffmixfsrcvxgdy5vrk6342hr229ks"; depends=[fastDummies Matrix Rcpp RcppEigen spatstat]; }; drfit = derive2 { name="drfit"; version="0.7.2"; sha256="03ahzmjzrkdrv36yj6vfg3g5bwn6lb7mlxmli68sixag5h83xq7f"; depends=[DBI drc MASS odbc qcc reshape2]; }; drgee = derive2 { name="drgee"; version="1.1.10"; sha256="0hy7887mvlxh73zk2yzp46bqakq924n940j21lw25jgygmzz1176"; depends=[data_table nleqslv Rcpp RcppArmadillo survival]; }; - driftR = derive2 { name="driftR"; version="1.1.0"; sha256="0mvrmwfqg234kk5klhmw7vmf8i0g485xkx5nk73iam16fbzl9y5g"; depends=[dplyr glue janitor lubridate magrittr readr readxl rlang stringr tibble]; }; drifter = derive2 { name="drifter"; version="0.2.1"; sha256="1xsp8cm02wd8zink0jqrdaii7s2dh0rw96rs6k8zr2g0341wmfba"; depends=[DALEX dplyr ingredients tidyr]; }; drmdel = derive2 { name="drmdel"; version="1.3.1"; sha256="1bpm9jj9dxk2daxp1yb7pn9jd750p27qa84vdfxpacm5r0mggnys"; depends=[]; }; dropR = derive2 { name="dropR"; version="0.1"; sha256="0sw5lqlfdn64dbykxdhk1pz18f83if871vkapa2nxgcfiy79b0vs"; depends=[plyr shiny]; }; @@ -7116,10 +7350,10 @@ in with self; { drugCombo = derive2 { name="drugCombo"; version="1.1.1"; sha256="0f4akxmj5jd89jm7kzkmqksxmb6fqj7jawvm3hpw6limyry3mp4z"; depends=[BIGL Deriv ggplot2 minpack_lm nlme rgl]; }; drumr = derive2 { name="drumr"; version="0.1.0"; sha256="09xi3sf424bpq10fq25j209dylfbi1lfd911r44ffadkxzvp5p1s"; depends=[audio stringr]; }; ds = derive2 { name="ds"; version="4.0"; sha256="1iic5fb27cnhsa83zg28hydrhzc01i9z0711xvk95c3gv7mbfp2p"; depends=[]; }; - ds4psy = derive2 { name="ds4psy"; version="0.2.0"; sha256="0gh224lyrbrky9p68cp47w7zzp8gmy3hgd9dzq0fng47lx97v6dq"; depends=[cowplot dplyr ggplot2 here magrittr tibble unikn]; }; + ds4psy = derive2 { name="ds4psy"; version="0.4.0"; sha256="10w6hwkc6f63ri2hkck53w5nxp9qxr24r1w6ir9zql3a84sbvgva"; depends=[cowplot ggplot2 unikn]; }; dsa = derive2 { name="dsa"; version="0.74.18"; sha256="17pyr5jn6mjcch5cl22z8mg31anirmgdjs6k9vjmz5ar35fcb1vi"; depends=[dygraphs extrafont forecast ggplot2 gridExtra htmlwidgets R2HTML reshape2 rJava timeDate tsoutliers xtable xts zoo]; }; dsample = derive2 { name="dsample"; version="0.91.2.2"; sha256="18c0zxaqwgbn9kmkwlnicwd74ljy2sxj0b9ksif13pdlj3zn57h1"; depends=[MASS]; }; - dscore = derive2 { name="dscore"; version="1.2.0"; sha256="01lv9yq5d817rx686l1cw1s2265a7wx9g41xhsdx59wkz37wrzwv"; depends=[dplyr Rcpp RcppArmadillo stringr tidyr]; }; + dscore = derive2 { name="dscore"; version="1.3.0"; sha256="04msklbnbxzzvyky4k91l1mp0nws1j36basrp3yalld3da7dzvdb"; depends=[dplyr Rcpp RcppArmadillo stringr tidyr tidyselect]; }; dse = derive2 { name="dse"; version="2020.2-1"; sha256="170rxrniszs8h59ah4mn4mz8d7kzix4g3vlz4icd8w6bl40c6ykc"; depends=[setRNG tfplot tframe]; }; dslabs = derive2 { name="dslabs"; version="0.7.3"; sha256="0fhd6zwa4lmgrrybywvj1vxd98a483yca605dj2pwipqifh1x6ka"; depends=[ggplot2]; }; dslice = derive2 { name="dslice"; version="1.2.0"; sha256="1k9hxpmr563p8bpd9m991lx5ig366mzk9j1lzldci9pq4jiayin1"; depends=[ggplot2 Rcpp scales]; }; @@ -7128,7 +7362,7 @@ in with self; { dsrTest = derive2 { name="dsrTest"; version="0.2.1"; sha256="1kljlfi7jf6fa8b5f3wxjsa9rlmzcp4qix3m2qyapz2lqd85mbb7"; depends=[asht exactci loglognorm]; }; dssd = derive2 { name="dssd"; version="0.2.1"; sha256="0lfr3bb3nba6pkg13d3kiblbp4naqxcdkvdqsa0y1zlhak74cgcj"; depends=[plot3D rgdal sf]; }; dst = derive2 { name="dst"; version="1.4.1"; sha256="1cz1fcyxpyv0ywmwlqdhgj3nzidnzcaxc1nkh8y5mph9wm612c25"; depends=[]; }; - dstack = derive2 { name="dstack"; version="0.2.0"; sha256="091hxqg6sy0qsz6jypi1nybg42mgdqw2ygkpmr5bnpc0n8yp55mq"; depends=[base64enc httr nanotime rjson rlist uuid yaml]; }; + dstack = derive2 { name="dstack"; version="0.2.1"; sha256="1xfrbz7bcmy5mpywjmn38lk3pmblad8wqic1jbvzn9pj2badn497"; depends=[base64enc bit64 httr rjson rlist uuid yaml]; }; dstat = derive2 { name="dstat"; version="1.0.4"; sha256="023jp0xdbg200ww1gnr3fzgjqd82acag0jps7q6j6m27q11psvgz"; depends=[]; }; dtangle = derive2 { name="dtangle"; version="2.0.9"; sha256="0yg1fbrqixqp93vdw3grvz1la5l2kidgs730qp6yihkp3260cxf3"; depends=[DEoptimR]; }; dti = derive2 { name="dti"; version="1.5.1"; sha256="08da7v7sl88g2jixfplvw9rc5rvlifq3fvyrgh9naa5jsmd8h5ia"; depends=[adimpro aws awsMethods gsl oro_dicom oro_nifti quadprog rgl]; }; @@ -7137,7 +7371,7 @@ in with self; { dtplyr = derive2 { name="dtplyr"; version="1.0.1"; sha256="0jgisglpaj1n6jhwqwsa1583i4ifazqdd9hh581w5akx5p0f05mp"; depends=[crayon data_table dplyr rlang tibble tidyselect]; }; dtree = derive2 { name="dtree"; version="0.4.2"; sha256="1cpv0pyf515610djxzfw1c83p3alk5a93clg4x9gk7a7qy4cyhr1"; depends=[caret evtree party partykit rpart]; }; dtt = derive2 { name="dtt"; version="0.1-2"; sha256="0n8gj5iylfagdbaqirpykb01a9difsy4zl6qq55f0ghvazxqdvmn"; depends=[]; }; - dttr2 = derive2 { name="dttr2"; version="0.1.0"; sha256="0fy4prwbg1jr27d6xfs46gyrqn21w513vq48cgw7pyls7zrqigys"; depends=[chk hms lifecycle]; }; + dttr2 = derive2 { name="dttr2"; version="0.3.0"; sha256="1irr0cpkls2fkck07az24yqc8llgw7q1nh7km0cm31dr4zxnj0hf"; depends=[chk hms lifecycle]; }; dtw = derive2 { name="dtw"; version="1.21-3"; sha256="02hyhx1sy5h3vzh9zixy18a7d47df4k5d0wyflcvlcbsbcl6p90s"; depends=[proxy]; }; dtwSat = derive2 { name="dtwSat"; version="0.2.6"; sha256="1mx3xxhf2ywi6cia47sn77wzxd8rg9wir7r8dx92k5dvawr425ki"; depends=[caret data_table dtw ggplot2 lubridate mgcv plyr proxy raster RColorBrewer Rdpack reshape2 rgdal scales snow sp xtable zoo]; }; dtwclust = derive2 { name="dtwclust"; version="5.5.6"; sha256="05dszmj89id2hk9apxa7721737s6292w2l7vazj7aqwk1jyghjpm"; depends=[bigmemory clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix nloptr proxy Rcpp RcppArmadillo RcppParallel RcppThread reshape2 RSpectra shiny shinyjs]; }; @@ -7154,7 +7388,8 @@ in with self; { dupree = derive2 { name="dupree"; version="0.3.0"; sha256="0q8c0z1yhym20rhfjrc8n03gk458z0n8axx013rcwk1vc2zwk670"; depends=[dplyr lintr magrittr purrr rlang stringdist tibble]; }; durmod = derive2 { name="durmod"; version="1.1-4"; sha256="0d721sbxjfh00gpxd4hj8iq04awfd0pcd6bw8cv7kny21l2f3w44"; depends=[data_table mvtnorm nloptr numDeriv Rcpp]; }; dvmisc = derive2 { name="dvmisc"; version="1.1.4"; sha256="01v6sixx0f3nrn6ymfifb3pvd2msfrwm21kmdv38laxq29vc4rsi"; depends=[cubature data_table dplyr ggplot2 MASS mvtnorm pracma rbenchmark Rcpp survey tab]; }; - dwdradar = derive2 { name="dwdradar"; version="0.2.0"; sha256="06wa3m77931lv47530hyczwdjrrfdmgczmbhwy0z9fzhn8kz0ipp"; depends=[]; }; + dvqcc = derive2 { name="dvqcc"; version="0.1.0"; sha256="011mwdwh046wninfjdy00wxn312ykzn90nz9fz3l7c5cw9gzzfkg"; depends=[ggplot2 tsDyn]; }; + dwdradar = derive2 { name="dwdradar"; version="0.2.3"; sha256="01xk058d5sfgknyplg65xplkhqi79mn3p5p5fjrv4vis0mq0dsvq"; depends=[]; }; dwlm = derive2 { name="dwlm"; version="0.1.0"; sha256="0n5dil9qvyy4gish3wnv8bzq0ci1p0dr2vmbbadl29jl7rd1v0rc"; depends=[]; }; dyads = derive2 { name="dyads"; version="1.1.2"; sha256="014gphxkn0wkdq5zgd71vv9dmzyswgpari59w5mf2070c0rr56n5"; depends=[MASS mvtnorm]; }; dydea = derive2 { name="dydea"; version="0.1.0"; sha256="15alr3f6wkkpjd5wmcjazi58yc8gwcqr662mjwlfg15r94fzqrlg"; depends=[Chaos01]; }; @@ -7164,6 +7399,7 @@ in with self; { dynCorr = derive2 { name="dynCorr"; version="1.1.0"; sha256="0l5k764j1zhsqpgp0ndihah63hsk3zv9hviixfmh4h3i0sr0q52p"; depends=[lpridge]; }; dynOmics = derive2 { name="dynOmics"; version="1.2"; sha256="0fsck5wx4rcfckjr6xg0s3a6cvh4881cqzy0af91icqg0p3zjj2l"; depends=[ggplot2 gplots]; }; dynRB = derive2 { name="dynRB"; version="0.15"; sha256="0fa6g4aj2cncg6mi0yc2yn6321qi7fz9d9cvqrnxhcnbbghdyzq9"; depends=[corrplot dplyr foreign ggplot2 RColorBrewer reshape2 vegan]; }; + dynaSpec = derive2 { name="dynaSpec"; version="1.0.0"; sha256="153pwzznkj0cm2kfh4s7k4k6yqj4rp0lvbrcb81rvqv2kvxg6i7m"; depends=[ggplot2 NatureSounds pbapply png seewave tuneR]; }; dynaTree = derive2 { name="dynaTree"; version="1.2-10"; sha256="1ng672mlv98xnsbd4xq70hxc8j158la4n63y46rw74granaz29ya"; depends=[]; }; dynamac = derive2 { name="dynamac"; version="0.1.11"; sha256="0dzw4h128z53vwdpkikhxqil0xjrcjrp1zmz0fy2qhq0n74sdyar"; depends=[lmtest MASS]; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; }; @@ -7177,8 +7413,9 @@ in with self; { dynfrail = derive2 { name="dynfrail"; version="0.5.2"; sha256="1q7ml24j0ycy2bwpa14vl96315ni7x9rfp0qmf36w00mylgc3ry6"; depends=[dplyr magrittr Rcpp RcppArmadillo survival tibble tidyr]; }; dynia = derive2 { name="dynia"; version="0.2"; sha256="1swip4kqjln3wsa9xl0g92zklqafarva923nw7s44g4pjdy73d5l"; depends=[]; }; dynlm = derive2 { name="dynlm"; version="0.3-6"; sha256="1g8qsb5m69yn35sm0shd97vbnbpqfkjkd7lbkwch1gpfxkld53zq"; depends=[car lmtest zoo]; }; + dynmix = derive2 { name="dynmix"; version="1.0"; sha256="0rv787yn264dsp6hpyzwfrgc3p0rp2vhklkdszs9fwy3s4x5177w"; depends=[MASS Rcpp RcppArmadillo zoo]; }; dynpanel = derive2 { name="dynpanel"; version="0.1.0"; sha256="073kfl5g4d7v8wd2qnpixqrxbac3cqj35z03ax2zlb8h2afa7j62"; depends=[gtools]; }; - dynparam = derive2 { name="dynparam"; version="1.0.0"; sha256="0rzkksb0j7vybz4mk9c4sm3zcxdjll1bqx54cbal8a0iq259rigp"; depends=[assertthat carrier dplyr dynutils Hmisc magrittr purrr stringr testthat tibble tidyr]; }; + dynparam = derive2 { name="dynparam"; version="1.0.1"; sha256="15g0divjrslp7yv1h0lv4ikqix40jn97b6rhy7wvmx2xr3vv8p7h"; depends=[assertthat carrier dplyr dynutils magrittr purrr stringr tibble tidyr]; }; dynpred = derive2 { name="dynpred"; version="0.1.2"; sha256="111ykasaiznn3431msj4flfhmjvzq7dd1mnzn1wklc5ndix1pvf9"; depends=[survival]; }; dynprog = derive2 { name="dynprog"; version="0.1.1"; sha256="11zsx2c4hv7k22pw85aa01zk4r0qpzwnf73ynylkfxfbi87rda9s"; depends=[rlang]; }; dynr = derive2 { name="dynr"; version="0.1.15-25"; sha256="1kwrx1wg7hwgwkdgws8pvdv2yj5m77xp7fnpxlj50c7xm3chjm78"; depends=[car deSolve fda ggplot2 latex2exp magrittr MASS Matrix mice numDeriv plyr Rdpack reshape2 stringi tibble xtable]; }; @@ -7186,19 +7423,21 @@ in with self; { dynsim = derive2 { name="dynsim"; version="1.2.1"; sha256="0nkxn9v4f353fhcn1vsdrh29mrms10zid63b84flg3c6hvc0x4qr"; depends=[ggplot2 gridExtra MASS]; }; dynsurv = derive2 { name="dynsurv"; version="0.3-7"; sha256="0ar8n84fpfy68cx321syg8hvjxjnh00mw0a9sid9dw58f956phf8"; depends=[BH ggplot2 nleqslv plyr reshape survival]; }; dynutils = derive2 { name="dynutils"; version="1.0.5"; sha256="1vcnz0yrss64i8pw459z2kp17b0fqgw41rpxbzpixhsqsz9sy22x"; depends=[assertthat crayon desc dplyr magrittr Matrix proxyC purrr Rcpp remotes stringr tibble]; }; - dynwrap = derive2 { name="dynwrap"; version="1.2.0"; sha256="10j1lp3118ad4q09i0ml162lq33mlipr22nfib120mzx5dj3fgp2"; depends=[assertthat babelwhale crayon dplyr dynparam dynutils FNN glue igraph magrittr Matrix processx purrr readr reshape2 stringr testthat tibble tidyr yaml]; }; + dynwrap = derive2 { name="dynwrap"; version="1.2.1"; sha256="1hcc2svsw52nvhyp9zw4iwrn88rpvjk424ckin0g6fyp5afdyfsk"; depends=[assertthat babelwhale crayon dplyr dynparam dynutils glue igraph magrittr Matrix processx purrr readr reshape2 stringr testthat tibble tidyr yaml]; }; e1071 = derive2 { name="e1071"; version="1.7-3"; sha256="0pf2pjb590z0jikgv1037xcp7dq06mg3dzmyffjw6gk7dd9blbdv"; depends=[class]; }; eAnalytics = derive2 { name="eAnalytics"; version="0.1.4"; sha256="15hhd4q2yxzq3a3awvk81ixa43hk519ym8ap7v1ahghyr0njnyyf"; depends=[dplyr DT energyr googleVis leaflet plotly shiny shinydashboard shinytest shinyWidgets]; }; eChem = derive2 { name="eChem"; version="1.0.0"; sha256="0wmf204hqd4s5har5l9bkcbrbmbqbb8m11w2aivi2gs98f3hy51p"; depends=[animation plot3D]; }; eDMA = derive2 { name="eDMA"; version="1.5-3"; sha256="0wyp81si6lcispqng4c7lii22qbyblvijgnlxvcsnkcxj5hpm76j"; depends=[Rcpp RcppArmadillo xts zoo]; }; eGST = derive2 { name="eGST"; version="1.0.0"; sha256="0qi4vg0pwy55js9ww1cw85ssim3x7s2p98cjijxvlrvid8sns5bq"; depends=[MASS matrixStats mvtnorm purrr]; }; + eHOF = derive2 { name="eHOF"; version="1.9"; sha256="13m64vdbcr6ify7p6zj0dh5rsy87c9r7m4sslmgh0afbglszzrcs"; depends=[lattice mgcv]; }; eMLEloglin = derive2 { name="eMLEloglin"; version="1.0.1"; sha256="087zw48lykls2jcsmpqd5jkrlpr0j423snp00liszjhdpdh59saq"; depends=[lpSolveAPI]; }; eNchange = derive2 { name="eNchange"; version="1.0"; sha256="07vdi05fr6mynb86haas21izdcjiagw14p1h8n0qr1hb3klvs8n5"; depends=[ACDm doParallel foreach hawkes iterators Rcpp]; }; - eNetXplorer = derive2 { name="eNetXplorer"; version="1.1.0"; sha256="1n84rf9axvvjf6s0mamf5z889hg3y32mhypasmxc455698z3d1k5"; depends=[calibrate expm glmnet gplots Matrix progress RColorBrewer survcomp survival survivalROC]; }; + eNetXplorer = derive2 { name="eNetXplorer"; version="1.1.1"; sha256="0z1k8dhvvzbhdmvj754hxmgc0g1fv5df7fv2hq8sil0yv9v1rvny"; depends=[calibrate expm glmnet gplots Matrix progress RColorBrewer survcomp survival survivalROC]; }; ePCR = derive2 { name="ePCR"; version="0.9.9-11"; sha256="0bkvjvygdnzcc23sslgkcrx11mzwgsqss37lwnbr7rq0jp1sw46s"; depends=[Bolstad2 glmnet hamlet impute pracma survival timeROC]; }; - eRTG3D = derive2 { name="eRTG3D"; version="0.6.2"; sha256="04m39jkp4lvv145wmcswc87qx36wpfkm95kq9fik8a3jb5myvjll"; depends=[CircStats ggplot2 gridExtra pbapply plotly plyr raster rasterVis sp tiff]; }; + eRTG3D = derive2 { name="eRTG3D"; version="0.6.3"; sha256="1fa2wcipjym3vz53zxb6dz2i52b963yxrq5h1k7wydpj53xwk5jm"; depends=[CircStats ggplot2 pbapply plotly raster rasterVis tiff]; }; eRm = derive2 { name="eRm"; version="1.0-1"; sha256="0njqzznnhnkvalmhiq5yq1w7gwp2myki5cv61w42ydvd27hdyyg9"; depends=[colorspace lattice MASS Matrix psych]; }; - eSDM = derive2 { name="eSDM"; version="0.3.3"; sha256="1iss3l7krcfjxa1pana1ijsbggpbv72gs2sc2gskdrhy5jwlk334"; depends=[dplyr magrittr purrr rlang ROCR sf shiny units]; }; + eSDM = derive2 { name="eSDM"; version="0.3.4"; sha256="169kxw1krrsqkrwm9zg9h0sczhc6r0y1rsw39m60kfbzqdhk57vk"; depends=[dplyr magrittr purrr rlang ROCR sf shiny units]; }; + eadrm = derive2 { name="eadrm"; version="0.1.3"; sha256="0bb9glwqkzr1px03l4dxvgzm7zkrp3349l5fwfmw6jp0fxdl98ij"; depends=[]; }; eaf = derive2 { name="eaf"; version="1.9-1"; sha256="0h7nilqa11s4casalilmk4ssgcl1lqn1w4033zxgc20y7f9rxhsg"; depends=[modeltools]; }; earlyR = derive2 { name="earlyR"; version="0.0.1"; sha256="14davqhh3n5dfsddnfd79ni56bssrpwhvkqkdb77a8x9fn8w32pv"; depends=[distcrete EpiEstim epitrix]; }; earlygating = derive2 { name="earlygating"; version="1.0"; sha256="0y6xjkh9p8bvanc9p5sycah8v81k85xr8i7vyvjb9g4a64srwhd7"; depends=[betareg doParallel foreach]; }; @@ -7213,17 +7452,17 @@ in with self; { easyPSID = derive2 { name="easyPSID"; version="0.1.1"; sha256="07m560j8bpzifik305ix33b26xg7w4xjn7lz9g9gp120cqs765dx"; depends=[foreign LaF stringr]; }; easyPubMed = derive2 { name="easyPubMed"; version="2.13"; sha256="1wd8idyqz7kgygp34mjp2abx82775ry8l07vsqdlqnc6fdnvg55d"; depends=[]; }; easySVG = derive2 { name="easySVG"; version="0.1.0"; sha256="03gl5gl0yqgpygd4kna79wrhflbnq3zrz3iq2i8hk9xqd83mszh3"; depends=[]; }; - easySdcTable = derive2 { name="easySdcTable"; version="0.5.0"; sha256="0qv0w5pfhbvf1zfi1zjq304a8z50fmi4l9vqjfqy7gz5gb6y5z43"; depends=[sdcTable shiny SSBtools]; }; + easySdcTable = derive2 { name="easySdcTable"; version="0.6.0"; sha256="0wkg0g9qn5rwmm66p2ba1sk9mclymm4p72239cs8yxsdakrwpw1m"; depends=[sdcTable shiny SSBtools]; }; easyVerification = derive2 { name="easyVerification"; version="0.4.4"; sha256="08mih1arx01vj7cs1jsln644pcvslpyw1rgr6jmv2czr6xd8qb7d"; depends=[pbapply Rcpp SpecsVerification]; }; - easyalluvial = derive2 { name="easyalluvial"; version="0.2.2"; sha256="0x7rkxvpc9xbkhnb5r1bal0fircn412v34fwgpm42h21rkjwiybw"; depends=[caret dplyr e1071 forcats ggalluvial ggplot2 ggridges gridExtra magrittr progress purrr randomForest RColorBrewer recipes rlang stringr tibble tidyr]; }; + easyalluvial = derive2 { name="easyalluvial"; version="0.2.3"; sha256="0026vqmbi54hyyv22r9nib5a5rnhlxxqjpk7ajmx1fvnjx8mydzm"; depends=[caret dplyr e1071 forcats ggalluvial ggplot2 ggridges gridExtra magrittr progress purrr randomForest RColorBrewer recipes rlang stringr tibble tidyr]; }; easyanova = derive2 { name="easyanova"; version="7.0"; sha256="1zpwh3r1r0n11hgqzph8f2aac44qb6rpnhk73hcblq0f9vs0an55"; depends=[nlme]; }; easycsv = derive2 { name="easycsv"; version="1.0.8"; sha256="1i2k5372b6a5pypk6m0rsvvkcy0y51pvh57a60rpgqk8q0yq8pig"; depends=[data_table]; }; easynls = derive2 { name="easynls"; version="5.0"; sha256="1ma2q4y5dxk6q99v880vqfsgy1fha96j7pi8ch699l0pi6bx0d6c"; depends=[]; }; easypackages = derive2 { name="easypackages"; version="0.1.0"; sha256="00paxdwz4bw3imqhcsw6hj1h0gmnpishlxcj79n826vhdy23jc4y"; depends=[assertthat devtools]; }; easypower = derive2 { name="easypower"; version="1.0.1"; sha256="1vf0zv55yf96wjxja6ifdjvgc9nw0jl0hnc1ygyjd8pmwbgdz9bl"; depends=[pwr]; }; - easyr = derive2 { name="easyr"; version="0.3-1"; sha256="139xg91j01i5sczbifga3476j98qv9n3vs5wp4ai66blfsiqf1yy"; depends=[data_table digest dplyr foreign glue Hmisc lubridate openssl qs readxl rlang stringr tibble XML]; }; + easyr = derive2 { name="easyr"; version="0.5-0"; sha256="0b10l1qw0hjqz7mn7wrhzk5kj09j16p2yd5znlh59v85hsdvn21l"; depends=[data_table digest dplyr foreign glue Hmisc lubridate openssl readxl rlang rprojroot stringr XML]; }; easyreg = derive2 { name="easyreg"; version="4.0"; sha256="1w4wlhziyhdyldm0zgnm73fnxrh0fv8hwcw5j8ircxb4npx7bcgg"; depends=[nlme]; }; - eatDB = derive2 { name="eatDB"; version="0.4.0"; sha256="0jdz36mzv8x2p4aifdscplnl1nb2dwwdmvc29wn14k47lm8c982h"; depends=[DBI RSQLite]; }; + eatDB = derive2 { name="eatDB"; version="0.4.1"; sha256="1p0dfdfa8409mdpr10ifj9vwskrypda9k02f7j6axcdnsfff6nha"; depends=[DBI RSQLite]; }; ebGenotyping = derive2 { name="ebGenotyping"; version="2.0.1"; sha256="1jllzc7kvvckrws8qhgvwy626llyb68sp1davp7swx48sf7rwcxc"; depends=[]; }; ebSNP = derive2 { name="ebSNP"; version="1.0"; sha256="0x3ijwg4yycsfy6jch1zvakzfvdgpiq8i7sqdp5assb8z1823w0b"; depends=[]; }; eba = derive2 { name="eba"; version="1.9-0"; sha256="1xbjd7n895wzzybpjf634a1jpbwqxwh7l17phz6zv7h6dfw19nx4"; depends=[nlme psychotools]; }; @@ -7231,52 +7470,54 @@ in with self; { ebdbNet = derive2 { name="ebdbNet"; version="1.2.5"; sha256="0kal4sqx12y04696ilwnwkmss4rn16dkbnalgqimz6i4jhz8n23h"; depends=[igraph]; }; ebirdst = derive2 { name="ebirdst"; version="0.2.1"; sha256="1cmi0hdh6363hcbqwglald3bn22rlvl4yqg4l3by6005mirjgx2i"; depends=[car data_table dplyr ggplot2 gridExtra magrittr mgcv PresenceAbsence rappdirs raster rgdal rlang scales sf stringr tidyr viridisLite xml2]; }; ebmc = derive2 { name="ebmc"; version="1.0.0"; sha256="0v9hkzy8ljddmi6wdjd1jga4ib566ikr1vgrvxba67ka524r6bbp"; depends=[C50 DMwR e1071 pROC randomForest rpart]; }; - ebreg = derive2 { name="ebreg"; version="0.1.0"; sha256="033ldzj9r9y14nq5bsy1ds9vys8imk1ysii8b889zd1bi319b05y"; depends=[lars Rdpack]; }; + ebreg = derive2 { name="ebreg"; version="0.1.2"; sha256="1azs6dh2c7qacmql9kyssxp3gdk7i3fyaq9k8jnagzlmmkzmxddf"; depends=[lars Rdpack]; }; + ecap = derive2 { name="ecap"; version="0.1.2"; sha256="0d260y4phh1a7zlj2lgvdf7xd2z14l9djv7nrwa84pwqqyijc7rl"; depends=[ggplot2 quadprog]; }; ecb = derive2 { name="ecb"; version="0.2"; sha256="17hj4d48j6rran64ajzlgkgz17mab51fa3lz8rm3mw0qhahkjlmc"; depends=[curl httr rsdmx xml2]; }; + ecce = derive2 { name="ecce"; version="1.0.7"; sha256="03p64l9krnpzdgqyj1fygqq36llsv4jc4bal1qvvgaf652w8fqwy"; depends=[RCurl rjson stringr]; }; ecd = derive2 { name="ecd"; version="0.9.1"; sha256="0d8mf5q6n7k5qj6kxvrb3habl0qmn2rxv814kydkrz2bg0scvm1q"; depends=[digest ggplot2 gridExtra gsl moments optimx polynom RcppFaddeeva Rmpfr RSQLite stabledist xtable xts yaml zoo]; }; ecdfHT = derive2 { name="ecdfHT"; version="0.1.1"; sha256="1n3n9n86pj8c54l3xvp7knvi0ajbnjmz9pi79p7wfq92a90fqx48"; depends=[rgl]; }; ecespa = derive2 { name="ecespa"; version="1.1-11"; sha256="154zny4ny5cbba9wpm2wmgvsi7wl77aiagc660xpwfvpiwmbxsmk"; depends=[spatstat]; }; - echarts4r = derive2 { name="echarts4r"; version="0.2.3"; sha256="0yxgxwsyhmbnw3llcgr4xh0i0d74awgsapdw7xsh57wzc539666m"; depends=[broom corrplot countrycode d3r data_tree dplyr htmltools htmlwidgets jsonlite magrittr purrr scales shiny stringi]; }; + echarts4r = derive2 { name="echarts4r"; version="0.3.2"; sha256="0ifjwxydi2an8m5jfp0l9bd34cm9572b2j4w1wka3i1jc7q1r3ff"; depends=[broom corrplot countrycode d3r data_tree dplyr htmltools htmlwidgets jsonlite magrittr purrr rstudioapi scales shiny]; }; echelon = derive2 { name="echelon"; version="0.1.0"; sha256="0dw15igx8jwgfr1f7p5pspxjiqhqmfp7shdhq8g07f4bj76irzm4"; depends=[]; }; - echo_find = derive2 { name="echo.find"; version="3.0"; sha256="15rrja2z01y4pbh2w4h2xcnwv9c81ppnb848203vavvlilm475y1"; depends=[boot minpack_lm]; }; + echo_find = derive2 { name="echo.find"; version="4.0.1"; sha256="1nadqqpxgx2ck16nzjp5ajm6714452qzllg5cq1jpisv1yb31db2"; depends=[boot minpack_lm]; }; echogram = derive2 { name="echogram"; version="0.1.2"; sha256="0kir7x32fk3fc63kr3b2j0hfkmivs2pwrlxyjvdg7xqc59hjp3ma"; depends=[geosphere readHAC]; }; - echor = derive2 { name="echor"; version="0.1.4"; sha256="0c14nhq97m7m0597ss0qddr9dys7sf3qw2pw0gfwr4xmk2bzdxih"; depends=[dplyr geojsonsf httr plyr purrr readr rlang tibble tidyr]; }; + echor = derive2 { name="echor"; version="0.1.5"; sha256="0knvvrpw5icyb02jrj8jhlj8ql1j145gxg6wagb458j7kjchqnan"; depends=[dplyr geojsonsf httr plyr purrr readr rlang tibble tidyr]; }; ecipex = derive2 { name="ecipex"; version="1.1"; sha256="16iyi6n0pnyfmy47b0ranjbh3spvq8cgkmcamzhgjfj7qn0ix184"; depends=[CHNOSZ]; }; eclust = derive2 { name="eclust"; version="0.1.0"; sha256="01x327w02m357lngmgv3drni2s67sass25xk9vni1z434n8i4428"; depends=[caret data_table dynamicTreeCut magrittr pacman pander stringr WGCNA]; }; - ecm = derive2 { name="ecm"; version="4.4.0"; sha256="1f9x3lcihvnkc5fr4g94h0m5a9h4rjmq9hkjs34il2id8bw92gj7"; depends=[car]; }; - ecmwfr = derive2 { name="ecmwfr"; version="1.2.2"; sha256="0gr1cqvl6p3x63kqg8v1xnk8h6g1acqb3agq9p51zqzcx40hdsrc"; depends=[curl getPass httr keyring memoise]; }; + ecm = derive2 { name="ecm"; version="4.5.0"; sha256="1h24c0g0r8rwz76yx4hzazdbzbrjv5yqlaxpjbm3zsxp624mrsim"; depends=[car]; }; + ecmwfr = derive2 { name="ecmwfr"; version="1.3.0"; sha256="0xwbcgd590vk4civa4s039avvvxsazzh9y05lw591mpm79lz19mj"; depends=[curl getPass httr keyring memoise]; }; ecodist = derive2 { name="ecodist"; version="2.0.5"; sha256="1kijyik0fnjhl69j230mkkdnkknmrbzj43mcj3xv7jy61i2sy0by"; depends=[]; }; ecolMod = derive2 { name="ecolMod"; version="1.2.6"; sha256="1n30faldfhpm2jkaw793vr220kgn3bmn8hxhw32rax294krmwn4v"; depends=[deSolve diagram rootSolve shape]; }; ecolottery = derive2 { name="ecolottery"; version="1.0.0"; sha256="0w5aq1aaqzz74vlj8hgnmn60l8rdrchx022dpspqnpvpzdlh65z5"; depends=[abc ggplot2]; }; econet = derive2 { name="econet"; version="0.1.81"; sha256="0hm1v4fjzyzdaxiw6lar7fxnqsckis3n7nrsravhbllhcf0aqq7w"; depends=[bbmle dplyr igraph intergraph MASS Matrix minpack_lm plyr sna spatstat_utils tnet]; }; - econetwork = derive2 { name="econetwork"; version="0.4"; sha256="0p20yj4xki4cj4pww51i6wj6cxp5k3ksc2vcb4f4qh7lr82hnb09"; depends=[bipartite blockmodels igraph Matrix_utils rdiversity]; }; economiccomplexity = derive2 { name="economiccomplexity"; version="1.0"; sha256="1bqayzpfz26lb985l66j27qybyqx0148fiikb8diamq0mbx3picc"; depends=[igraph Matrix]; }; ecoreg = derive2 { name="ecoreg"; version="0.2.3"; sha256="1bhh4bnvrvgz49wim5r0b4awfsn9l23wvl4kl0vny0s4hm7cgahc"; depends=[]; }; + ecorest = derive2 { name="ecorest"; version="1.0.0"; sha256="13x95z99yqld1fvfgzbm6ahrnvfvcqwlb23yjr187yg83iynh79v"; depends=[viridis]; }; ecoseries = derive2 { name="ecoseries"; version="0.1.5"; sha256="1q35hp5hl6z28hns5rnp3mjn6hqp5qh714pagw7fw4d4a6wnvacy"; depends=[magrittr RCurl readr rjson rvest tibble xml2 zoo]; }; ecosim = derive2 { name="ecosim"; version="1.3-1"; sha256="0gpgjswqmibnz9lpcidvw3y1wmd38l4lyha4fbs0agiz6yyfiyjn"; depends=[deSolve stoichcalc]; }; - ecospace = derive2 { name="ecospace"; version="1.3.1"; sha256="0xrhlhpndycj2hdf50lygymc1hwmczx74r6l9f2qmm6v90c0729k"; depends=[FD]; }; + ecospace = derive2 { name="ecospace"; version="1.4.2"; sha256="0vfaf27bv687ypxg5apzv63rl495rxyflqw33j17i4h0s7cjkgrm"; depends=[FD]; }; ecospat = derive2 { name="ecospat"; version="3.1"; sha256="17mxny0m0pl0b4vn7slc2qqabjp3i91nz0yjwfvrd827s2hhcra9"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 classInt dismo doParallel ecodist foreach gbm gtools iterators maps maptools matrixStats poibin PresenceAbsence randomForest raster rms snowfall sp spatstat vegan]; }; ecotox = derive2 { name="ecotox"; version="1.4.2"; sha256="0i4wjarg8gj4hfr0d4fqk74ymhkzrq3vkklpv5v1511ci19hpv16"; depends=[tibble]; }; ecotoxicology = derive2 { name="ecotoxicology"; version="1.0.1"; sha256="084xkr59d7x9zxmsnsyym2x8jshz6ag6rvnmhd1i6fzar8ypwccb"; depends=[]; }; - ecoval = derive2 { name="ecoval"; version="1.2.6"; sha256="1kizssw71a0sq4z48lqsj5yrnq8f0iw4p4xsbbskiz45c6j8nsa5"; depends=[jpeg rivernet utility]; }; + ecoval = derive2 { name="ecoval"; version="1.2.7"; sha256="1hnryk9y3074iy7hv40jr00lpg2w99l7halwv6bj14v6ygddj2k7"; depends=[jpeg rivernet utility]; }; ecp = derive2 { name="ecp"; version="3.1.2"; sha256="11f9p869xr0zg779i46gmflxlq4xclk9wxbab0nj2fan26pn4sfy"; depends=[Rcpp]; }; ecr = derive2 { name="ecr"; version="2.1.0"; sha256="0vvkdxlcqaim9mkgwgdxrx1xhw3lshi1nxfw3kqllq14p3l6xss4"; depends=[BBmisc checkmate ggplot2 parallelMap ParamHelpers reshape2 smoof]; }; - ectotemp = derive2 { name="ectotemp"; version="0.1.2"; sha256="0dy6n2gaz6qgfj2gvavlgl4ic15wq1lb9ykynihi77nyxnz67i46"; depends=[dplyr psych]; }; + ectotemp = derive2 { name="ectotemp"; version="0.2.0"; sha256="172rij0mmk7dd10lpbsxm4yy7072nz1fh7jfiyqmagzs5hwa31jv"; depends=[dplyr psych]; }; ed50 = derive2 { name="ed50"; version="0.1.1"; sha256="058p1750ba5hp4rczi26grgwjia2ny1880v1vfp6wxad13r459pq"; depends=[boot]; }; ed50simulation = derive2 { name="ed50simulation"; version="0.1.1"; sha256="00fknpssrpin8bpjhf2lsjx3lbpinrmqa6jzmgy3nslkc51x0939"; depends=[boot]; }; - eda4treeR = derive2 { name="eda4treeR"; version="0.2.0"; sha256="0fh6nfgvbkvjm1f0b292ggi0mr8ylq5pg2wp8cph46j8rhbgbdxz"; depends=[dae dplyr emmeans ggplot2 lme4 magrittr pbkrtest tidyverse]; }; - edbuildmapr = derive2 { name="edbuildmapr"; version="0.1.1"; sha256="1zv5031zx9lz6ii74947kp5vw8lqx0gi5si2mbvmfk7ywc4dv3jh"; depends=[dplyr magrittr sf spdep stringr tidyselect tmap]; }; - edbuildr = derive2 { name="edbuildr"; version="0.1.1"; sha256="0cbwkvlj5w3vbg2k20fqxanrahly3ca22zdlfqk62v38i78cpldq"; depends=[dplyr magrittr openxlsx scales stringr tidyselect]; }; + eda4treeR = derive2 { name="eda4treeR"; version="0.3.0"; sha256="1shhajd9m9cxj9hdz34bnbs6sx20si37wh6ljw0wx5yrc9m7z9ib"; depends=[dae dplyr emmeans ggplot2 lme4 magrittr pbkrtest tidyverse]; }; + edbuildmapr = derive2 { name="edbuildmapr"; version="0.2.0"; sha256="1jyw6rgvyjzfqd75k2mn4c5z5gwgbyiiy02l4pagq0mkcbbg55zh"; depends=[dplyr magrittr sf spdep stringr tidyselect tmap]; }; + edbuildr = derive2 { name="edbuildr"; version="0.2.1"; sha256="1zzifxfkxrvs7nq7rzd84kfslqiqyjyj592mbsbzm2wdafbvkiqj"; depends=[dplyr magrittr openxlsx scales stringr tidyselect]; }; edcc = derive2 { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; }; edci = derive2 { name="edci"; version="1.1-3"; sha256="1f1ry2adfranfrrvf1gkiy58pra3z6bray4v5fgr0z9n1ybcaff0"; depends=[]; }; eddi = derive2 { name="eddi"; version="0.0.1"; sha256="19cgrqdcji509igb6rmlwb75xyyvrh34nv6zyjjfcsc31p5nvf95"; depends=[raster rgdal]; }; eddington = derive2 { name="eddington"; version="2.1.1"; sha256="0v88v2xmvirnj661jsg2qh7n8afaw71mqks9csnmmz3c16agp7b6"; depends=[Rcpp]; }; edeR = derive2 { name="edeR"; version="1.0.0"; sha256="1dg0aqm5c4zyf015hz1hhn3m4lfvybc4gc1s7sp8jcsk46rxz0cc"; depends=[rJava rjson rJython]; }; - edeaR = derive2 { name="edeaR"; version="0.8.4"; sha256="14skrsgnd4nslmhi3cpg5v8vz8q11diywd5ad0wbr01aak2bv10c"; depends=[bupaR data_table dplyr ggplot2 ggthemes glue hms lubridate miniUI purrr rlang shiny shinyTime stringr tibble tidyr zoo]; }; + edeaR = derive2 { name="edeaR"; version="0.8.5"; sha256="0f9isfcpzc4r6z06hagnvrxfv1wizwv2ab59bv86df4c1l7sxz2c"; depends=[bupaR data_table dplyr forcats ggplot2 ggthemes glue hms lubridate miniUI purrr rlang shiny shinyTime stringr tibble tidyr zoo]; }; edf = derive2 { name="edf"; version="1.0.0"; sha256="14ikm6j0ndxrk7c7lh5mbd2aci46d4j9a30mvcgnxy3kq6046a7b"; depends=[]; }; edfReader = derive2 { name="edfReader"; version="1.2.1"; sha256="076far4fhd6rpa6fwffad4cgchjvar135yblvlrm33s9pd5bf0hn"; depends=[]; }; edfun = derive2 { name="edfun"; version="0.2.0"; sha256="1wxx6bgy03z7c1d6556bbjl1cb49n2vn734fw2d5c1jk0zsh3fmz"; depends=[]; }; - edgar = derive2 { name="edgar"; version="2.0.2"; sha256="1cxx08l06dv38n5af7wyb22zslwzz5pxvg5r4520zd2k7w2m7k1l"; depends=[qdapRegex R_utils stringi stringr tm XML]; }; + edgar = derive2 { name="edgar"; version="2.0.3"; sha256="129q32bnpcx0l2ffnids87692hc7nbg4hw3r117aamp835i12gri"; depends=[qdapRegex R_utils stringi stringr tm XML]; }; edgeCorr = derive2 { name="edgeCorr"; version="1.0"; sha256="19n67yc58ksin7xydrnfsyyw7fqawm5xli67cz4lv4wb62w6r6ld"; depends=[]; }; edgeRun = derive2 { name="edgeRun"; version="1.0.9"; sha256="0d5nc8fwlm61dbi00dwszj1zqlij4gfds3w1mpcqnnfilr2g3di1"; depends=[data_table edgeR]; }; edgebundleR = derive2 { name="edgebundleR"; version="0.1.4"; sha256="0pajr95qqppk2m4l7rfi46rll32z8a7lmq0vmb3p8n0aks5ajn1n"; depends=[htmlwidgets igraph rjson shiny]; }; @@ -7284,6 +7525,7 @@ in with self; { edina = derive2 { name="edina"; version="0.1.1"; sha256="1lpmidyxi54byrsnwwadkh5rr454635xrwa4v2wz8mqr2hngxis3"; depends=[ggplot2 jjb Rcpp RcppArmadillo reshape2 rgen]; }; editData = derive2 { name="editData"; version="0.1.2"; sha256="1ibpd2rlm6i9izyizmdhzxv8agrw920hxbin5y79cmf78rdg1sxy"; depends=[DT miniUI rstudioapi shiny tibble]; }; editrules = derive2 { name="editrules"; version="2.9.3"; sha256="07j8wj0fk34irqgsz70h2wad3wdjv5xl1cl702vxbr0nvmpw2ngl"; depends=[igraph lpSolveAPI]; }; + edmdata = derive2 { name="edmdata"; version="1.0.0"; sha256="1kvwlhkk7cqyqdai9mxypnv09cgz6g7s7dhmp38achgppl1z0a9j"; depends=[]; }; edrGraphicalTools = derive2 { name="edrGraphicalTools"; version="2.2"; sha256="105jv2sz10xbl881lkhgmxzgmb8629mqsminhd197khrkf9nv40i"; depends=[lasso2 MASS mvtnorm rgl]; }; edstan = derive2 { name="edstan"; version="1.0.6"; sha256="1gm1rxwywigyfdlcm2yj1m9qjb4s6w7chr1ck7b32x1pdxdl3ns5"; depends=[ggplot2 rstan]; }; educineq = derive2 { name="educineq"; version="0.1.0"; sha256="0qd6kvcy280glv3q6lcrawmnsfvp90as95chgi3hav0yj2dpakn6"; depends=[flexsurv ineq]; }; @@ -7293,11 +7535,12 @@ in with self; { eegkitdata = derive2 { name="eegkitdata"; version="1.0"; sha256="1krsadhamv1m8im8sa1yfl7injvrc4vv3p88ps1mpn8hibk5g51m"; depends=[]; }; eel = derive2 { name="eel"; version="1.1"; sha256="0cv6dhw57yy140g73z94g9x1s42fpyfliv9cm2z1alm7xwap1l0x"; depends=[emplik rootSolve]; }; eemR = derive2 { name="eemR"; version="1.0.1"; sha256="1w3nwlrbxm7z4c3acx991zk5drgs67qys7kgl0qakh5vrdsrxw3v"; depends=[assertthat dplyr pracma purrr R_matlab rlist stringr viridis]; }; + eeptools = derive2 { name="eeptools"; version="1.2.4"; sha256="048gz26dqgfsnxhp4r99j7p4s4d5pxsjci5zw8wjvv35lizij573"; depends=[arm data_table ggplot2 maptools vcd]; }; eesim = derive2 { name="eesim"; version="0.1.0"; sha256="0ljj1jp9cl0im8k7sfjd28ggj4q9a14df3554kwxkssr1vsn1wbc"; depends=[dplyr lubridate purrr viridis]; }; effectFusion = derive2 { name="effectFusion"; version="1.1.2"; sha256="0m392wrkmgvys7a2bk2w1swfkjikkllng8sy8wb8s2j9y6c3wanp"; depends=[bayesm cluster ggplot2 GreedyEPL gridExtra MASS Matrix mcclust]; }; effectR = derive2 { name="effectR"; version="1.0.2"; sha256="1icr1sx98x3h8rbky1agdh809arhjqcypyajl7y50yis8a5pkycb"; depends=[ggplot2 reshape2 rmarkdown seqinr shiny viridis]; }; - effects = derive2 { name="effects"; version="4.1-4"; sha256="1jbpyji7qn5hz8a6afsfbng0nx0a7w0v3v51wpmnbipfjchyalhy"; depends=[carData colorspace estimability lattice lme4 nnet survey]; }; - effectsize = derive2 { name="effectsize"; version="0.3.0"; sha256="0kijp4wamkidaxysc11dd4vhvnm4wnbi87871wcbwn27k5b6i5dg"; depends=[bayestestR insight parameters]; }; + effects = derive2 { name="effects"; version="4.2-0"; sha256="0iks79rd4knrd81x4kvcpgpclr69l0m0v6sfla8k3wzkcnydycv8"; depends=[carData colorspace estimability insight lattice lme4 nnet survey]; }; + effectsize = derive2 { name="effectsize"; version="0.3.2"; sha256="0h9f260gb8707pcssf8dq7dakpq1ggkxr5kpbrbl8sn8h3qbvws9"; depends=[bayestestR insight parameters]; }; effectsizescr = derive2 { name="effectsizescr"; version="0.1.0"; sha256="0shfjk6r3bz04jakrn5nwgymjx60lk83i0akcx7zqfxp3k8yncs5"; depends=[Kendall]; }; efflog = derive2 { name="efflog"; version="1.0"; sha256="1sfmq7xrr6psa6hwi05m44prjcpixnrl7la03k33n0bksj8r1w6b"; depends=[]; }; effsize = derive2 { name="effsize"; version="0.8.0"; sha256="129g9nv6qmbh6z7gazx4vxs5myvcgdhszi28396gsvzrlzi0ik8b"; depends=[]; }; @@ -7307,29 +7550,28 @@ in with self; { egcm = derive2 { name="egcm"; version="1.0.12"; sha256="0nssf5six1j7z6fss7478zdbsfx60myzw833m7nsnaf1r8n4ixaf"; depends=[ggplot2 MASS pracma quantmod tseries urca xts zoo]; }; egg = derive2 { name="egg"; version="0.4.5"; sha256="1fy7srpiavfn8kyrr1m84an7acgwi6ydzrg71m3b0vk7y9ybmj0m"; depends=[ggplot2 gridExtra gtable]; }; eggCounts = derive2 { name="eggCounts"; version="2.3"; sha256="0y74dd8s406yz6nhwlb09hgarw90a68wji2vykxpqcrfll814g7q"; depends=[BH boot coda lattice numbers Rcpp RcppEigen rootSolve rstan StanHeaders]; }; - egor = derive2 { name="egor"; version="0.20.03"; sha256="03np4p2pf1nc5rmzg9wxjrqi7h3f7672l574cfi731j0yw8bfcwx"; depends=[dplyr igraph network purrr rlang shiny survey tibble tidygraph tidyr]; }; + egor = derive2 { name="egor"; version="0.20.06"; sha256="1fpx5bf0cqkclk91d45hglr2bmksbf2sf5g3mc7l0n872z2xdhjp"; depends=[dplyr igraph network purrr rlang shiny srvyr tibble tidygraph tidyr]; }; eha = derive2 { name="eha"; version="2.8.1"; sha256="00sny5wm415drcsvvzq6gk9r4fc4z7f7y9lix61hnf8ibqfv7bb1"; depends=[survival]; }; - ehaGoF = derive2 { name="ehaGoF"; version="0.1.0"; sha256="1qrx9rmf4ifasxycnzj06xn3gl0gp9w1vplb4wrghiziqw5cqird"; depends=[]; }; + ehaGoF = derive2 { name="ehaGoF"; version="0.1.1"; sha256="15hpzj3ridl6w3pd5z86d88cc88jw09qpqhsdwkar4dby8lgxhi0"; depends=[]; }; ehelp = derive2 { name="ehelp"; version="1.2"; sha256="0264nx4bidrbwhlxx9llarvh4zb3xnzln8km14823q1hclkpm2fq"; depends=[]; }; ei = derive2 { name="ei"; version="1.3-3"; sha256="0i8pvpal23zwsqldhmm3iis4vw9s08mlydpshaig2dsd9549gn11"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix sp tmvtnorm ucminf]; }; eiPack = derive2 { name="eiPack"; version="0.2-1"; sha256="0xcgl9pr6d960zhp8fd944ba5p5ybp520lp2a4jgsj1lcvqf8xbn"; depends=[coda MASS msm]; }; - eia = derive2 { name="eia"; version="0.3.4"; sha256="1yjrgmf6s9c35wpgpg66gi0wmfynm3kbcyaknsw44blpkd35c6yq"; depends=[dplyr httr jsonlite lubridate magrittr memoise purrr readxl tibble]; }; + eia = derive2 { name="eia"; version="0.3.6"; sha256="1fyvm2j53m0mq53ld6kgr8nmf020vcp9jcafsbk7xaymgxncvmqr"; depends=[dplyr httr jsonlite lubridate magrittr memoise purrr readxl tibble]; }; eicm = derive2 { name="eicm"; version="1.0.0"; sha256="1xa4rfwq64zf5zkdxqslzmph3qc99mfrb8gvf00mqx6qvdzj3475"; depends=[doSNOW foreach GA iterators pso snow ucminf]; }; eigeninv = derive2 { name="eigeninv"; version="2011.8-1"; sha256="18dh29js824d7mrvmq3a33gl05fyldzvgi8mmmr477573iy9r30g"; depends=[]; }; eigenmodel = derive2 { name="eigenmodel"; version="1.11"; sha256="1l3n0z736xf3x6cyxzmmq1jb2glxi2b75z7v39y4471knh6nbb4d"; depends=[]; }; eigenprcomp = derive2 { name="eigenprcomp"; version="1.0"; sha256="156qyv7sl8nng55n3ay6dnpayyfrqv27ndz40xf4w92is9zmymy0"; depends=[]; }; eikosograms = derive2 { name="eikosograms"; version="0.1.1"; sha256="13s5wqcc8iwnhn3msrh9dfrvq9bwlby93p9v5wcnrm8m9iskax1s"; depends=[plyr]; }; - eimpute = derive2 { name="eimpute"; version="0.1.0"; sha256="0q8b98fmfrbk00jr7gzqaij781g5v9wj883xphyrvr0khlr499xl"; depends=[Rcpp RcppEigen]; }; + eimpute = derive2 { name="eimpute"; version="0.1.1"; sha256="1ipm6v4irk4d4qxld09h8r0kknjmbikvn27y68wq7r02qhcvj4nv"; depends=[Rcpp RcppEigen]; }; einet = derive2 { name="einet"; version="0.1.0"; sha256="02v4k6031q2bcjkhbypzkgdj1lyvqbsi1nb0y40zb26bk2381ycq"; depends=[assertthat entropy igraph magrittr shiny]; }; eive = derive2 { name="eive"; version="2.3"; sha256="073hwx944db7zxq6yib6yvciaic11k49zl1iqphippcd5ygkad80"; depends=[Rcpp]; }; eivtools = derive2 { name="eivtools"; version="0.1-8"; sha256="0ynmrql6dv10m7cwba5mzwlbvp6ab53nzqqvk3ihwyiqzmnnmpk4"; depends=[R2jags]; }; - eiwild = derive2 { name="eiwild"; version="0.6.7"; sha256="1fp4kvlmcjjnzn2a5cmlzaf6y5q6cdbbi2nmvjyqc4y1bmwh3srf"; depends=[coda gtools lattice]; }; - eixport = derive2 { name="eixport"; version="0.4.6"; sha256="0jyz6xqhl893zf902i36fpmj7a8hncpp1s0n9qr8kkwjba6yd1ba"; depends=[cptcity ncdf4 raster sf sfheaders silicate sp tidyr]; }; + eixport = derive2 { name="eixport"; version="0.4.7"; sha256="10jfyagwc0g2qaxw1asyw906m0g9llyfjsn457hb8h06p31gbi89"; depends=[cptcity ncdf4 raster sf sfheaders silicate sp tidyr]; }; elaborator = derive2 { name="elaborator"; version="1.0"; sha256="1jhs1hiwlww0sr3yacg5amr1mhwjwa10b374klrkkvzzw2y20p1x"; depends=[bsplus dendextend dplyr forcats gclus haven plotly purrr RColorBrewer reshape2 rlang seriation shape shiny shinyBS shinycssloaders shinydashboard shinyjs shinyWidgets tidyr V8]; }; elasso = derive2 { name="elasso"; version="1.1"; sha256="0nz3vw803dvk4s45zc9swyrkjwna94z84dn4vfj3j17h74a0cij2"; depends=[glmnet SiZer]; }; elastic = derive2 { name="elastic"; version="1.1.0"; sha256="1xg8gqa0maasx85fbff4vid2r8s0fgzj4iswyayybzik99zb26ly"; depends=[crul curl jsonlite R6]; }; elasticIsing = derive2 { name="elasticIsing"; version="0.2"; sha256="1zjgvz7w5j06x2cd1fzjl85di95ah67m1lanw01kic2bvhfwfbn6"; depends=[cvTools glmnet magrittr qgraph reshape2]; }; - elasticnet = derive2 { name="elasticnet"; version="1.1.1"; sha256="0p9dplnsp28z4s2fl6afbwrgd0aj339fak8mmndicmrh7bb7rpmb"; depends=[lars]; }; + elasticnet = derive2 { name="elasticnet"; version="1.3"; sha256="0nxcw06d0cp2mbqzg2fm9yys5xm6xx7bfcfvr0avcs8afkvz29j8"; depends=[lars]; }; elasticsearchr = derive2 { name="elasticsearchr"; version="0.3.1"; sha256="0v79kb0w33n7l64ipkq0bd7kp5hmj6cvxf5rflqjd412lnf669q8"; depends=[dplyr httr jsonlite]; }; elec = derive2 { name="elec"; version="0.1.2.1"; sha256="1gk75y83n6hvv36fp1n6kncln35j6f3ahasnzhc4fp71aq6q6vjf"; depends=[]; }; elec_strat = derive2 { name="elec.strat"; version="0.1.1"; sha256="09196k5c3jsikh98d33bn70izwcbx0wb5ki9fv1ij0dw9mnv4c3p"; depends=[elec]; }; @@ -7337,7 +7579,7 @@ in with self; { elections = derive2 { name="elections"; version="1.0"; sha256="0ig3pd1dw978g2sg4ynzd3p15nk6hx17pxvbxfi5rm131mjdmjdm"; depends=[]; }; electionsBR = derive2 { name="electionsBR"; version="0.3.1"; sha256="0yxaxd84d13mb6xbixgm9rd56alrh5qnrmh54n1h94mna89jb103"; depends=[data_table dplyr haven magrittr readr]; }; electivity = derive2 { name="electivity"; version="1.0.2"; sha256="0clxsn9zkpdlq9jgq029ag310ji0hd0l23wfyqh8gkkj0091ip5a"; depends=[]; }; - electoral = derive2 { name="electoral"; version="0.1.1"; sha256="0lmw9kwr189dzfxzlns9fmhrdy93ja8jl2s4jir07lichyiavs03"; depends=[dplyr ineq tibble]; }; + electoral = derive2 { name="electoral"; version="0.1.2"; sha256="1kf5ix0bmrh7zwgg87zf10s8pvq32fpqlmyw2dq1kf9gv3s91p04"; depends=[dplyr ineq tibble]; }; elementR = derive2 { name="elementR"; version="1.3.6"; sha256="12gg2x6xzms2ni80qdm04bfajg55ff6zkki0y2cz47kq70wzfkmg"; depends=[abind colourpicker devtools EnvStats gdata gnumeric httpuv lmtest outliers R6 reader readODS readxl shiny shinydashboard shinyjs stringr tcltk2 zoo]; }; elevatr = derive2 { name="elevatr"; version="0.2.0"; sha256="0721w28pb07ndw24k4zssh5r90fd4mf33yxigricnz23z29ql120"; depends=[httr jsonlite progress raster sf sp]; }; elexr = derive2 { name="elexr"; version="1.0"; sha256="1xmrzlp55z6k3psdg4a3x3rsilvq3k37v9r7ydfn80ahvqjz0fqh"; depends=[]; }; @@ -7345,41 +7587,42 @@ in with self; { elhmc = derive2 { name="elhmc"; version="1.1.0"; sha256="0ngva7rnfj75fq93ycsv929m9ykijp48r7cvd6sfmi0sqsjinax5"; depends=[emplik MASS plyr]; }; elitism = derive2 { name="elitism"; version="1.0.4"; sha256="0n5g1nd1dd5wc76qa2va1lyxahg9p062l8wdqzq43ah6943pjzgr"; depends=[MASS]; }; elliplot = derive2 { name="elliplot"; version="1.2.0"; sha256="186i4gr8k9bifzssblln8z6wxfmnplls3kc4m2liiz86mzsnim9r"; depends=[]; }; - ellipse = derive2 { name="ellipse"; version="0.4.1"; sha256="0g82vc51m3c1k0hnpp2zla6amxxgk2mmkl8ssnsc49jv3599r6hs"; depends=[]; }; - ellipsis = derive2 { name="ellipsis"; version="0.3.0"; sha256="01z9gq311nzwv3a0sa49jhm5ylqd59srip4vjkrf23hzgb5i9y0b"; depends=[rlang]; }; + ellipse = derive2 { name="ellipse"; version="0.4.2"; sha256="1wm5v7zdv2drgdba7z96jwsx74mqhlq80qgrvdb4vb5r02dcw68p"; depends=[]; }; + ellipsis = derive2 { name="ellipsis"; version="0.3.1"; sha256="1nvmkcca57d9067rcggw1gby80ibx5hplk2myz0cs9zwilaib2jg"; depends=[rlang]; }; elliptic = derive2 { name="elliptic"; version="1.4-0"; sha256="1dhba0yfxjd5rlqsxp5a7s2hclfkla9wigsr39dlma67l6qjjmxn"; depends=[MASS]; }; - elmNNRcpp = derive2 { name="elmNNRcpp"; version="1.0.1"; sha256="1n71b5pqd1szhmp4q1h9aqgkx7s54f5i3xk5nljwzsn7cyih1kb3"; depends=[KernelKnn Rcpp RcppArmadillo]; }; + elmNNRcpp = derive2 { name="elmNNRcpp"; version="1.0.2"; sha256="1labr1a9r563wg2m3insrpf98wcq5fdkql5fi58c9k8lg5b1knl3"; depends=[KernelKnn Rcpp RcppArmadillo]; }; elo = derive2 { name="elo"; version="2.1.1"; sha256="1i6qcw2plw12v065142kx58d911zr1gcsd1xic152zxvh89nmhxx"; depends=[pROC Rcpp]; }; elsa = derive2 { name="elsa"; version="1.1-28"; sha256="01sj2a4yhv5m6qj6ih26zw4yzd8s27lll7yp0yysjjrwz79a0fbq"; depends=[raster sp]; }; emIRT = derive2 { name="emIRT"; version="0.0.11"; sha256="1h91q9vi9cv14bmkaakyynw2z9sx51w0c2kw2in0x91wx7scmd0p"; depends=[pscl Rcpp RcppArmadillo]; }; - emayili = derive2 { name="emayili"; version="0.3.9"; sha256="0cc4i0d56k1l87ifa0x9vpfw0615hk7hzgyxfp68fh5yrj0fc6ab"; depends=[base64enc curl glue httr magrittr mime stringi]; }; - emba = derive2 { name="emba"; version="0.1.4"; sha256="133831zghkjr8bx2b995zw7rmn9vwws3xwkjzd9akz8myfdzp55v"; depends=[Ckmeans_1d_dp igraph magrittr purrr readr rje usefun visNetwork]; }; - embed = derive2 { name="embed"; version="0.0.6"; sha256="1bwr32923b04cnvsm3pqzsw4rnihjqdfpqkh6pga520dw9x2w1dd"; depends=[dplyr generics keras lme4 purrr recipes rlang rstanarm tensorflow tibble tidyr uwot withr]; }; + emayili = derive2 { name="emayili"; version="0.4.0"; sha256="087h50pzk0nsj7y639yb5rsar26x0rc722m1ryrjfsn21xap82x1"; depends=[base64enc curl glue httr magrittr mime stringi]; }; + emba = derive2 { name="emba"; version="0.1.6"; sha256="175r1gxaqcvdqr1jil95f6kcl28rsvai9yb4z5hbg2jh68hfxr0b"; depends=[Ckmeans_1d_dp dplyr igraph purrr readr rje stringr tibble tidyr tidyselect usefun visNetwork]; }; + embed = derive2 { name="embed"; version="0.1.1"; sha256="0prwm787d0l48hzdwwfsn4ly6mkjxls4vrpbh44lrmym6dl4kvcq"; depends=[dplyr generics keras lme4 purrr recipes rlang rsample rstanarm tensorflow tibble tidyr uwot withr]; }; embryogrowth = derive2 { name="embryogrowth"; version="7.6"; sha256="0bsg904jikb1dqichkinpgm0difg17sfczw6q4zab6r02s7yb53s"; depends=[deSolve HelpersMG numDeriv optimx]; }; emdbook = derive2 { name="emdbook"; version="1.3.12"; sha256="0ls3zxxlwmdv7zn1v9i1y9zc2sn0hbgmyjvsj7zn3ajsw7wwlih6"; depends=[bbmle coda lattice MASS plyr]; }; - emdi = derive2 { name="emdi"; version="1.1.7"; sha256="0zkvkw4vbr19zc6ac1yvg8nsd70zl1vkdxlcydsadybgff4kq55b"; depends=[boot ggplot2 gridExtra HLMdiag maptools MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 rgeos]; }; + emdi = derive2 { name="emdi"; version="2.0.1"; sha256="1yvfw06c569lwb6z54xa1j7fm6fqkxw0cdxi9g6hnf9qf1f2xw9z"; depends=[boot formula_tools ggplot2 gridExtra HLMdiag maptools MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 rgeos saeRobust spdep]; }; emdist = derive2 { name="emdist"; version="0.3-1"; sha256="1z14pb9z9nkd0f2c8pln4hzkfqa9dk9n3vg8czc8jiv0ndnqi7rq"; depends=[]; }; - emg = derive2 { name="emg"; version="1.0.8"; sha256="05j96ch20nca4dci25w0m9y8l6yhm26fapkmm4rfqg6si8agr52s"; depends=[moments]; }; + emg = derive2 { name="emg"; version="1.0.9"; sha256="04sm05xnjns7wcvpk35ywkxy6g0mm84r060mkmzh64wq58c2q06l"; depends=[moments]; }; emhawkes = derive2 { name="emhawkes"; version="0.9.0"; sha256="1h6map6w66q91s6g1qr9wfk589cbvva1banqrxzzf29g7ihl15vh"; depends=[maxLik]; }; - emld = derive2 { name="emld"; version="0.4.0"; sha256="16ikzkvl4xn7ixa4sfh21isx2gpppvx5ajpann26f35645pm51xk"; depends=[jsonld jsonlite xml2 yaml]; }; + emld = derive2 { name="emld"; version="0.5.0"; sha256="0b1jr69qafn3jn7yvngiyqfzmfqc7pn67p3dxwypi9dl3ygqv24s"; depends=[jsonld jsonlite xml2 yaml]; }; emma = derive2 { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; }; emme2 = derive2 { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; }; - emmeans = derive2 { name="emmeans"; version="1.4.6"; sha256="0mxk7ghlv4r6sna4897q1la2xgyn1dw3r9srhm9x4h5l4701avfa"; depends=[estimability mvtnorm numDeriv plyr xtable]; }; + emmeans = derive2 { name="emmeans"; version="1.5.0"; sha256="09nap4aazpbsswqzk0d4kjngwd8sib222s31yd08sd1sqw432c6k"; depends=[estimability mvtnorm numDeriv plyr xtable]; }; emoa = derive2 { name="emoa"; version="0.5-0.1"; sha256="0rkr4d4fyqxmsrlbzar27z97qkw4cl1dkvfnhbdwpgg9fi1cixmz"; depends=[]; }; emojifont = derive2 { name="emojifont"; version="0.5.3"; sha256="1cdrrl3hvrs8rskyy6zgr7q2mmg8yb9k8sld1m64zsp7y009g19k"; depends=[ggplot2 proto showtext sysfonts]; }; emon = derive2 { name="emon"; version="1.3.2"; sha256="19khjjpyxvzhzihqq15w02l5v5ryyvxlklz1ch2gkmqcpnvyga32"; depends=[MASS mgcv]; }; emov = derive2 { name="emov"; version="0.1.1"; sha256="04w0bjyxvfb4ky573byp7j9b7x4gqycr5pgpnsl6rzag00zsf45a"; depends=[]; }; empichar = derive2 { name="empichar"; version="1.0.0"; sha256="1hcl6wbf4saxxp54j2w67csv6nzfgc3f3wdd9lk9grmkxsaab4rx"; depends=[Rcpp RcppArmadillo]; }; empiricalFDR_DESeq2 = derive2 { name="empiricalFDR.DESeq2"; version="1.0.3"; sha256="0h2mcdw4v3ac6dn0s4z37l4sdzbi12sxrnn0f0gc9z207dyyf6w3"; depends=[DESeq2 GenomicRanges]; }; - emplik = derive2 { name="emplik"; version="1.0-4.3"; sha256="1g4hz85bvw29c77zs0ig487z92jjl682vv457x81l077h0psvk7c"; depends=[quantreg]; }; + emplik = derive2 { name="emplik"; version="1.1-1"; sha256="1kw8g8j075bsicdvgkjf4870rfv5c30gvmw6qkkaz3ki22x74w77"; depends=[quantreg]; }; emplik2 = derive2 { name="emplik2"; version="1.21"; sha256="1980bwc4fc4rwzlwya030n5rv8rq0s82hnw955mvaxrbmicnqlla"; depends=[]; }; ems = derive2 { name="ems"; version="1.3.2"; sha256="1ambmd183f9959kwms71q3ks187y2ngpab45xlclpm2108n5j3pb"; depends=[boot rms survival]; }; emstreeR = derive2 { name="emstreeR"; version="2.2.0"; sha256="1qbv61j2ya6zvyp8494xi8dhjlb58jmqil9cm5z0pr7p2sr6l32r"; depends=[BBmisc BH ggplot2 Rcpp RcppArmadillo RcppMLPACK scatterplot3d]; }; - emuR = derive2 { name="emuR"; version="2.0.4"; sha256="152lg7sf98a7qrblz1ryjdpsprk2arfzwlq8z7b4ilr771lq0plw"; depends=[base64enc compare DBI dplyr git2r httpuv jsonlite MASS mime purrr RCurl readr rlang RSQLite rstudioapi shiny stringr tibble tidyr uuid wrassp]; }; + emuR = derive2 { name="emuR"; version="2.1.0"; sha256="12virgawhgbmpg37w64ncwghfiarj9zr7njy5az6klgny422fj87"; depends=[base64enc DBI dplyr git2r httpuv httr jsonlite mime purrr readr rlang RSQLite rstudioapi shiny stringr tibble tidyr uuid wrassp]; }; emulator = derive2 { name="emulator"; version="1.2-20"; sha256="11z25iqyzck0s4hw0i86i9jsi52w9bjxx3zdpafssyfqfk7z5avw"; depends=[mvtnorm]; }; enRich = derive2 { name="enRich"; version="3.1"; sha256="0xl9rhz6mflzp1g5d51xz74dsm8qp16jbkflhzrha3vfirn2jh8q"; depends=[]; }; enc = derive2 { name="enc"; version="0.2.2"; sha256="16x8cckw0ah2yfczvv4j1jy4f8m23fkac38fz068964sv4l8z645"; depends=[]; }; encode = derive2 { name="encode"; version="0.3.6"; sha256="04zwclmqasbx54m77wqfr9jg4axhkkqnykaxv3if8lnr46fl3zyc"; depends=[]; }; + encryptedRmd = derive2 { name="encryptedRmd"; version="0.2.0"; sha256="0fvh2fs7az02gxl169cvfx4i9cl8hk4vc8fz2v21pym7nq8c8y3k"; depends=[readr rmarkdown sodium]; }; encryptr = derive2 { name="encryptr"; version="0.1.3"; sha256="01gsimhrb9c7k5d9h5dbvm4h9i7fc9vzi8wgqb5f191ki27fsw9w"; depends=[dplyr knitr openssl purrr readr rlang]; }; endoSwitch = derive2 { name="endoSwitch"; version="1.0.0"; sha256="1cj4skk317ppnayk1ph63vll49vs74fljc25cn1iviwgjq64ly0k"; depends=[data_table maxLik msm]; }; endogMNP = derive2 { name="endogMNP"; version="0.2-1"; sha256="0maxcp321ngbxrg0i23nlwhj849v771xahh53367x928ss4f8v7i"; depends=[]; }; @@ -7403,26 +7646,27 @@ in with self; { entcn = derive2 { name="entcn"; version="0.1.0"; sha256="0wpa1293d1bdlx8pikzfh4vqhw7p45bi140aj3x4m8p21h5b4gd6"; depends=[bitops RCurl rjson RYoudaoTranslate stringr]; }; entropart = derive2 { name="entropart"; version="1.6-4"; sha256="1wr3pkn786crklsjzg1kq3dm1ks230jp391g31cgf5hfm537c3qb"; depends=[ade4 ape EntropyEstimation ggplot2 ggpubr reshape2 SPECIES vegan]; }; entropy = derive2 { name="entropy"; version="1.2.1"; sha256="10vg4818q5g54pv2nn9x5i7pvky5nsv96syy47pz2mgqp1273cpd"; depends=[]; }; - entrymodels = derive2 { name="entrymodels"; version="0.2.0"; sha256="18byy6ky37n0a3ixrl6jik9pqbv07sbfkm9vb7wrziyywdfqmzp8"; depends=[dplyr magrittr readr]; }; + entrymodels = derive2 { name="entrymodels"; version="0.2.1"; sha256="0fz7jzax12pzw47iry4amgg9z4z3z94kig6r5dhcqa84kq02294v"; depends=[dplyr magrittr readr]; }; envDocument = derive2 { name="envDocument"; version="2.4.1"; sha256="074m7adnasvys28kjdgj9071fi90vsl4yv5zvpxik4crlx098dlw"; depends=[]; }; envalysis = derive2 { name="envalysis"; version="0.4"; sha256="1qfg8z63qc6n8agv0g7n3qjcwid32axwkyyjjxa271by335aplha"; depends=[drc ggplot2]; }; enveomics_R = derive2 { name="enveomics.R"; version="1.8.0"; sha256="00akdhqs7jabk7g33rwmxs92jcr39shy9s456nqxk6x4244d2vb3"; depends=[fitdistrplus investr sn]; }; - enviGCMS = derive2 { name="enviGCMS"; version="0.6.0"; sha256="0d0a7zv3nlsk8dq7wn3mg0nnvry56r9zm4y593mr1shcnmfm6nyn"; depends=[animation BiocParallel broom crosstalk data_table dplyr DT genefilter ggplot2 ggraph ggridges igraph mixtools plotly RColorBrewer Rdisop reshape2 rmarkdown shiny shinythemes]; }; + enviGCMS = derive2 { name="enviGCMS"; version="0.6.6"; sha256="01y3qqh99aclarglpdg8mb9iikzkm1w62mv93m22lm8ami25a372"; depends=[animation BiocParallel data_table mixtools RColorBrewer Rdisop]; }; enviPat = derive2 { name="enviPat"; version="2.4"; sha256="1gvb7jmwwh4l44b50xmrq3bysr2iv6442yh9pdk6n81g3bgpz1d0"; depends=[]; }; enviPick = derive2 { name="enviPick"; version="1.5"; sha256="04q6zwqq2ip8b8h2n1jpgx1bzcvi7lazljs0806wiakbc79x232p"; depends=[readMzXmlData shiny]; }; - envirem = derive2 { name="envirem"; version="2.1"; sha256="175190l81r24v6ygr759l4qwi4i3v6n57jmgswamr01px4pvhxag"; depends=[huxtable palinsol raster RSAGA sp]; }; + envirem = derive2 { name="envirem"; version="2.2"; sha256="061p76w76hhs201p3l4wvbfbrcd9h8bigkn5xpsz5pmvhd2hrdkn"; depends=[knitr palinsol raster RSAGA sf]; }; envlpaster = derive2 { name="envlpaster"; version="0.1-2"; sha256="11a5n40k1ln5gxxvwq1vh4dhmhifhlm89hkhf36qnhj4bjh3v3y0"; depends=[aster aster2 caTools MASS]; }; envnames = derive2 { name="envnames"; version="0.4.0"; sha256="12mfbcksrp733jycasaiavlsmx138xmjpywly1wha4ds6bfw93hr"; depends=[]; }; - envoutliers = derive2 { name="envoutliers"; version="1.0.0"; sha256="1wkd6xpsw5n9jx0qq5p88h6j8vkcyiyajd3zb6im5bc4d73nmi07"; depends=[car changepoint ecp ismev lokern MASS robustbase]; }; + envoutliers = derive2 { name="envoutliers"; version="1.1.0"; sha256="1wgrrkkpkmf300qb56mq6nxigwnpq551sjxlk05lk3ckawx66srf"; depends=[car changepoint ecp ismev lokern MASS robustbase]; }; eoR = derive2 { name="eoR"; version="0.4.0"; sha256="0vn4s4af94n9h6x7z14qwpz94rgsd5m3mv55wva7x3h99ryhm83s"; depends=[data_table]; }; eoffice = derive2 { name="eoffice"; version="0.1.9"; sha256="019z09jml67ymc2y8y853nflcsvibkligvnngar8f9qv3k2j5k7j"; depends=[broom devEMF dplyr flextable ggplot2 ggplotify htmlwidgets magick magrittr officer plotly R_devices rvg]; }; epade = derive2 { name="epade"; version="0.3.8"; sha256="1alvsifc6i71ilm1xxs1d7sqlapb48bqd6z2n4wi6pqcjvwp7bif"; depends=[plotrix]; }; epandist = derive2 { name="epandist"; version="1.1.1"; sha256="0hxgbjns5bk82rgcmykxifnnxcnqdzmkimkkmpdif64zr5g3gjdg"; depends=[]; }; epanetReader = derive2 { name="epanetReader"; version="0.7.3"; sha256="05pwa6z03qsjwr9pxpbxycsd21p7mf5j5ajyg4yaas5g100s1k8c"; depends=[]; }; - eph = derive2 { name="eph"; version="0.3.0"; sha256="19v892mryggsvr4w8sbxr8zpwfm94hs52am4r8gc7wxrdid2h3c0"; depends=[assertthat attempt curl dplyr expss glue htmltools janitor leaflet magrittr purrr questionr readr readxl rlang rvest sf stringr tibble tidyr tidyverse xml2 zoo]; }; + epca = derive2 { name="epca"; version="1.0.0"; sha256="1jzknymbsxvgrsiwnibhy9y5nlhsz4dyx22zpxs1493map5v8442"; depends=[clue GPArotation imager irlba matlab Matrix RSpectra tidyverse]; }; + eph = derive2 { name="eph"; version="0.4.0"; sha256="0yznfhsp6sgymq02m4g477pnqlmmbdvwv32sidaa2giaf3nr4izj"; depends=[assertthat attempt curl dplyr expss glue htmltools janitor leaflet magrittr purrr questionr readr readxl rlang rvest stringr tibble tidyr tidyverse xml2 zoo]; }; epiDisplay = derive2 { name="epiDisplay"; version="3.5.0.1"; sha256="08ym6hcbmajzr4rasdb35fxk79vgpzfc16rmcm34f7f3zzz09dyl"; depends=[foreign MASS nnet survival]; }; epiGWAS = derive2 { name="epiGWAS"; version="1.0.2"; sha256="0jqblfmz02za3b2pgi15379bzgh98yv5kyv8kh0lkzhrmpgph2zj"; depends=[DescTools glmnet matrixStats SNPknock]; }; - epiR = derive2 { name="epiR"; version="1.0-14"; sha256="134jswcln8y7fwphn8x926wxvb6ax848jcwnhfa8jzs6jw0f1csi"; depends=[BiasedUrn survival]; }; + epiR = derive2 { name="epiR"; version="1.0-15"; sha256="0hbnqrkrrdn7v661gh088fsnx18ljbg0jgr649lij3w14xqvv6bi"; depends=[BiasedUrn survival]; }; epibasix = derive2 { name="epibasix"; version="1.5"; sha256="0ivr51x37cbdryli9b4p4iq9v2c90zwmywrwdmg7ryq5vprvvbp0"; depends=[]; }; epicontacts = derive2 { name="epicontacts"; version="1.1.0"; sha256="0f4a1y311z3fxw7ygj6fgsq6d2qn0ivxsjlh742pkmg3jb63s0f3"; depends=[colorspace dplyr igraph magrittr threejs visNetwork]; }; epidata = derive2 { name="epidata"; version="0.3.0"; sha256="1b00k086wiwhhrlh4348wqqza1v0whakwy5h7q95rmgxz7lppiim"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr xml2]; }; @@ -7433,7 +7677,6 @@ in with self; { epiphy = derive2 { name="epiphy"; version="0.3.4"; sha256="04wsppjycnrzrml3zxrpr0xdxxas3hj8rskiivx5vfmfjpwipq4r"; depends=[ggplot2 msm pbapply Rcpp transport]; }; episcan = derive2 { name="episcan"; version="0.0.1"; sha256="02687f8gpc2czn19lapvazd6mnm8902ay0lhgi3wdrzfhir42m4r"; depends=[]; }; episensr = derive2 { name="episensr"; version="0.9.6"; sha256="193abdngrvxriv1dxjv0panf0whczli637xfs2fr05p588lljpr6"; depends=[actuar boot ggplot2 gridExtra magrittr plyr reshape trapezoid triangle]; }; - episheet = derive2 { name="episheet"; version="0.4.0"; sha256="0y3wy91hr3b9iky5k81mf897wg2gcdv05afhndjqwcfb0xkn2f9q"; depends=[assertthat dplyr ggplot2 magrittr rlang tidyr]; }; episplineDensity = derive2 { name="episplineDensity"; version="0.0-1"; sha256="0nmh97xajnnh54i04yq8fdici4n5xvcbpdbjdbz79483gnils4vn"; depends=[nloptr pracma]; }; epistasis = derive2 { name="epistasis"; version="0.0.1-1"; sha256="0dfh26bs72i01hpxpgpgyiwpmg9mjpib8zynhc5ssxa0skm518wz"; depends=[glasso igraph Matrix tmvtnorm]; }; epitab = derive2 { name="epitab"; version="0.2.2"; sha256="0yi65bblsikwsa9i7wys1mqf6pp6j01kyc8xkyrhs5n62y1k68nc"; depends=[kableExtra knitr MASS survival xml2]; }; @@ -7443,35 +7686,37 @@ in with self; { eply = derive2 { name="eply"; version="0.1.2"; sha256="0al44pvqf6ls3dh129vlv3g56hk1nbql09rj0qsb04d9kaz9anrp"; depends=[magrittr]; }; epoc = derive2 { name="epoc"; version="0.2.6-1.1"; sha256="1qlj4cl7mh5k52v2ippfs3cish5iadnix5w46p25hjqiriksclna"; depends=[elasticnet irr lassoshooting Matrix survival]; }; eponge = derive2 { name="eponge"; version="0.1.0"; sha256="19wd80l35acij793spxglcwz346i2iivk6n0q2304wjcca6qzds7"; depends=[rlang]; }; + epos = derive2 { name="epos"; version="0.1.1"; sha256="0spaf6v9mmi9rmxip3aa2d1s31as973nc7ai3nlcp4qxgnp965dm"; depends=[dplyr ggplot2 gridExtra hash stringr testthat tidyr TopKLists xtable]; }; epr = derive2 { name="epr"; version="3.0"; sha256="0czfz6qkcpa2qqs3pqii27hgpdvdzfrvxl0ip67v58hamq7kvjfv"; depends=[car lme4]; }; epsiwal = derive2 { name="epsiwal"; version="0.1.0"; sha256="0lmcmiqcc1pjj1d0zyn0hc23if1lkm85p6vcjqbddpnv9ags2mbh"; depends=[]; }; epuR = derive2 { name="epuR"; version="0.1"; sha256="0dx808dq78c1s78fv0my79ar7h20fyxa0gpfdv85zi80v9g82g4z"; depends=[data_table lubridate openxlsx stringr xts zoo]; }; epubr = derive2 { name="epubr"; version="0.6.1"; sha256="0rp9q6hriilps5h6nc1226w5dvzws1g78pg3ldrq2r4dakpvsmjj"; depends=[dplyr magrittr tibble tidyr xml2 xslt]; }; - epxToR = derive2 { name="epxToR"; version="0.4-0"; sha256="1vw9czdxp80jpvcc8bj5m4fshlavlawc1735m0s0d0x14z3giy6g"; depends=[httr XML]; }; - eq5d = derive2 { name="eq5d"; version="0.7.0"; sha256="0k9hvazynphhpwpbxi9dgmrjqp0nlmgkikx6qpdg5hp2psl0lmyx"; depends=[]; }; - eqn2svg = derive2 { name="eqn2svg"; version="0.1.0"; sha256="01hqmhjy62ic28jsx8zn0zg87pipxmd82795pj66661qkq306lb0"; depends=[htmltools magrittr]; }; + epwshiftr = derive2 { name="epwshiftr"; version="0.1.1"; sha256="1cyb46i3kml6zzn12hs9lpcsgxkwp5pslfy0nw8i4wydl2bgk0sa"; depends=[checkmate data_table eplusr fst future_apply jsonlite progressr psychrolib rappdirs RNetCDF units]; }; + epxToR = derive2 { name="epxToR"; version="0.4-1"; sha256="00m64ham9fd9dsw37ic2m62fy4pvmwfwmjx8cg6n4rwbgq9q49sg"; depends=[httr XML]; }; + eq5d = derive2 { name="eq5d"; version="0.7.2"; sha256="0nnvs8ashxwam5r8v2lyrwmxdr55n17whc6sxxlaj7v08dz3ndmk"; depends=[]; }; eqs2lavaan = derive2 { name="eqs2lavaan"; version="3.0"; sha256="1lj6jwkfd84h9ldb6l74lrx2pnsl1c0d7mnrcrjkska87djb2nzd"; depends=[lavaan stringr]; }; eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; }; equSA = derive2 { name="equSA"; version="1.2.1"; sha256="0gbv7jvjivnril3cmvknzmqlmpb4mv0rhqwk1i87wqxsvrgplik1"; depends=[bnlearn doParallel foreach huge igraph mvtnorm ncvreg SIS speedglm survival XMRF ZIM]; }; equalCovs = derive2 { name="equalCovs"; version="1.0"; sha256="18w7panyd6mhdr3x1iz9fkrw7min22rishs4xhkxgxs3nnyglkrn"; depends=[]; }; - equaltestMI = derive2 { name="equaltestMI"; version="0.1.0"; sha256="1zqhgx1x6lqjwqisl3ydb6yqp3jn6x7dgnc57r93v73sjx2j5aiz"; depends=[lavaan]; }; + equaltestMI = derive2 { name="equaltestMI"; version="0.6.0"; sha256="1qlm28144fidc56czvd0kg4i9wrmb8x1ll0sb1m4lvdxvh4gh66m"; depends=[lavaan]; }; equate = derive2 { name="equate"; version="2.0.7"; sha256="07cji0z139fk70d4wvrpk5m34fq1pfnqrsw336lgnp5a7zp3jz7n"; depends=[]; }; equateIRT = derive2 { name="equateIRT"; version="2.1.0"; sha256="1g8gs00ralh5zw1fv3xd4c2xrb8gxgb7srcp0hgbpr0f7hw53fjm"; depends=[mirt statmod]; }; equateMultiple = derive2 { name="equateMultiple"; version="0.0.0"; sha256="0q29bv8bb0c3sprhnkbbpn31phw37dwgk23v5ny4abzvlcgwncdb"; depends=[equateIRT numDeriv Rcpp RcppArmadillo statmod]; }; equivUMP = derive2 { name="equivUMP"; version="0.1.1"; sha256="05ihbr6dd9qv89ll90ynk4g3d3xy2w5q0m696djfa63f1x92c01w"; depends=[]; }; equivalence = derive2 { name="equivalence"; version="0.7.2"; sha256="170l5gnk0dkjkfsx7qyrw56ircwsjzz9cvhakgyrqh7bj5734i79"; depends=[boot lattice PairedData]; }; equivalenceTest = derive2 { name="equivalenceTest"; version="0.0.1.1"; sha256="1lr1qc4mv8f9hwqidj1rwhxqm1fb8cf1hnb1k32xpdqwzsxbfa47"; depends=[cubature polynom Rdpack rootSolve]; }; - erah = derive2 { name="erah"; version="1.1.0"; sha256="1jp75z9y97v0dr656qqcf3npsijk91x5f2lyiwjy54yrzlf5bxp5"; depends=[igraph ncdf4 nnls quantreg Rcpp signal XML]; }; + erah = derive2 { name="erah"; version="1.1.1"; sha256="1xl0ixn8dkap18la0qnaxb2qgf48vspfzybgwynpb3ib95gw9ji0"; depends=[igraph ncdf4 nnls quantreg Rcpp signal XML]; }; erboost = derive2 { name="erboost"; version="1.3"; sha256="09hlpn6mqsmxfrrf7j3iy8ibb2lc4aw7rxy21g3pgqdmd9sbprim"; depends=[lattice]; }; ercv = derive2 { name="ercv"; version="1.0.1"; sha256="0rs4yhm9sjnqkrgqqy6b8wj9fgk910hxc8d7zi4qwql0v1gid27l"; depends=[]; }; - erer = derive2 { name="erer"; version="2.5"; sha256="0wgzd7r63d20vghmbilqn1p5033i5p31asya1gzwlipgyfxmqp0b"; depends=[lmtest systemfit tseries urca]; }; + erer = derive2 { name="erer"; version="3.0"; sha256="143ygibzjsxlmf3p5ldcc4dpr3mcm873g4rwgb55q912bdhsn725"; depends=[lmtest systemfit tseries urca]; }; + ergMargins = derive2 { name="ergMargins"; version="0.1.1"; sha256="090j5l23qvmvwbk6dqyby78vn4myhidqfy3ac1pfwwj73jf6c7p2"; depends=[btergm ergm Matrix network numDeriv sna statnet xergm_common]; }; ergm = derive2 { name="ergm"; version="3.10.4"; sha256="08hzhc06sfchbq8kq5yvs7gxz0v6nvx0qdb2g6ac38n54cd0npw8"; depends=[coda dplyr lpSolve MASS Matrix network purrr rlang robustbase statnet_common tibble trust]; }; ergm_count = derive2 { name="ergm.count"; version="3.4.0"; sha256="1bvbqckssqj91q56nz17mrvadk1i2mm301z9rj8qkh8116fwf93w"; depends=[ergm network statnet_common]; }; ergm_ego = derive2 { name="ergm.ego"; version="0.5"; sha256="1vvyfjvkddc1qr189wqbp8sbqmd317y71ml9jjjjns3znahriqv3"; depends=[coda ergm network purrr RColorBrewer rlang statnet_common tibble]; }; ergm_rank = derive2 { name="ergm.rank"; version="1.2.0"; sha256="1vc96rjsqvs6ybnzkpv12h0hsrx2s96k4hjilzjpjnhbazh5vynz"; depends=[ergm network statnet_common]; }; ergm_userterms = derive2 { name="ergm.userterms"; version="3.10.0"; sha256="1aqrgdayh73dkr71gf8vawlj6qgv66pxr4klxgqb6ffan66b5p8g"; depends=[ergm network statnet_common]; }; ergmharris = derive2 { name="ergmharris"; version="1.0"; sha256="1bfijhsljlykb94wi25lbpv35zkmgqpmgzmxcq98gjvzbn5j9pdq"; depends=[]; }; - ergmito = derive2 { name="ergmito"; version="0.2-1"; sha256="0g823winannv0i0v4b1mdsivcgrmr1y7nr3iia4si7gvx3r07fgk"; depends=[ergm MASS network Rcpp RcppArmadillo texreg]; }; + ergmito = derive2 { name="ergmito"; version="0.3-0"; sha256="0ajfx8g31p0lf0ajrgssb9lkhs1bxkz19z3q99l500znlivc2fy2"; depends=[ergm MASS network Rcpp RcppArmadillo texreg]; }; erp_easy = derive2 { name="erp.easy"; version="1.1.0"; sha256="193n45w0rq3cy0nmxvv0h6s3yr8kfjlg90nd4dnqlsq85zlsizij"; depends=[gtools plyr signal]; }; erpR = derive2 { name="erpR"; version="0.2.0"; sha256="1y6abc5fkcyyjh36maj1zbxppqzwd5wkvzvqahyvzsz5fqpjkcdx"; depends=[rpanel]; }; err = derive2 { name="err"; version="0.2.0"; sha256="1915b0vmqdd8whwdrqjphld1jaxawh5b7di6wf7q3sx779lblsrs"; depends=[]; }; @@ -7479,46 +7724,49 @@ in with self; { errorist = derive2 { name="errorist"; version="0.1.0"; sha256="0zq5h2wffn9d3f3blzh736478k91smlvz5hxy55hcjqffpxcp4ah"; depends=[searcher]; }; errorizer = derive2 { name="errorizer"; version="0.2.1"; sha256="10p7ydm81x2gls0wn692llgj2rxhg4s96rv7gvihmgi5dflraypq"; depends=[]; }; errorlocate = derive2 { name="errorlocate"; version="0.3.0"; sha256="04vr2ll3mdy1znm11lv739drckv82n45qbpda3qyjyzlffvgkmhg"; depends=[lpSolveAPI validate]; }; - errors = derive2 { name="errors"; version="0.3.3"; sha256="037spyvw4rm2fcsq7a53svljlsgssrzrshyq01fnky0kq3z0iqqm"; depends=[]; }; + errors = derive2 { name="errors"; version="0.3.4"; sha256="1f43pn900nvaqbxfgq30zxq0y1cxywxxcziv20yhj4hvgbn0527r"; depends=[]; }; errum = derive2 { name="errum"; version="0.0.3"; sha256="18frrfnhnmg4fjlpfwj8aklzfwafpwqvagm0aschkqc8mz6wnjbz"; depends=[Rcpp RcppArmadillo]; }; - es_dif = derive2 { name="es.dif"; version="1.0.1"; sha256="0cpncj68dhqfcpw7fjqc23d84rq767hqpw6la6iszfrrc27bx4lw"; depends=[]; }; + es_dif = derive2 { name="es.dif"; version="1.0.2"; sha256="1swxg8mdp9jj9f0x0cawhhbx8gmmpsgqlbifx2v04a2vkgdkigqf"; depends=[]; }; esDesign = derive2 { name="esDesign"; version="1.0.2"; sha256="16dhddw4gp210bb1mmx5df1ziffadiz06s4i3znnzac8rv5564hp"; depends=[]; }; esaBcv = derive2 { name="esaBcv"; version="1.2.1"; sha256="0hgjcdbiy1a71vsb2vcyp0xmhy6wi4nlh1sqsfb2vxckc95i9i21"; depends=[corpcor svd]; }; esaddle = derive2 { name="esaddle"; version="0.0.6"; sha256="0i89yid4zryc95aj8n512wj3cs5nx351w4rc1nghq5a7vp139fa7"; depends=[doParallel mvnfast plyr Rcpp RcppArmadillo]; }; esaps = derive2 { name="esaps"; version="0.1.0"; sha256="1rchs4i7n221gyhj9kbka4zmi2lf72q3ak2pdxkr7w6pcx6803yz"; depends=[plyr readODS readxl]; }; + esback = derive2 { name="esback"; version="0.3.0"; sha256="09k895028hqa62m8fhbg5b33ry0in6kbrw0lnphn0rgjhlifxp4z"; depends=[esreg]; }; esc = derive2 { name="esc"; version="0.5.1"; sha256="0gns7gz55p6pha05413r3hlvd7f2v1amxkg13d197mab1ypqic7q"; depends=[]; }; - escalation = derive2 { name="escalation"; version="0.1.2"; sha256="1s1kkh9wmd4sanmyramq4fa23fpb26v9nk4d2yg2phgaigxyp041"; depends=[BOIN dfcrm DiagrammeR dplyr ggplot2 gtools magrittr purrr RColorBrewer stringr tibble tidyr tidyselect viridis]; }; + escalation = derive2 { name="escalation"; version="0.1.3"; sha256="0ch5888p4zvpr8wny74pajmk4m0smvp901v3jzhhrqvadwg04wgy"; depends=[BOIN dfcrm DiagrammeR dplyr gtools magrittr purrr RColorBrewer stringr tibble tidyr tidyselect viridis]; }; eseis = derive2 { name="eseis"; version="0.5.0"; sha256="03pjcms3aj7sm2wrld64v1dw53bqn9pmsayndma03abjh66rblii"; depends=[caTools fftw IRISSeismic matrixStats multitaper raster Rcpp reticulate rgdal rmarkdown shiny signal sp XML]; }; eshrink = derive2 { name="eshrink"; version="0.1.0"; sha256="0s1jl652za7qwv70kmc1h3vbwlijl49527pwpm0z347lz2jdcigj"; depends=[glmnet MASS]; }; esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; }; esmprep = derive2 { name="esmprep"; version="0.2.0"; sha256="076sm26mkkvig2g04k32z2dlp2h9gnqgzckhirl4pqm01siknl61"; depends=[lubridate]; }; esquisse = derive2 { name="esquisse"; version="0.3.0"; sha256="1cb30qmsxpkx62rjaasly13l00bvz03i9jq5apsr4fk26vw7gfrk"; depends=[ggplot2 htmltools jsonlite miniUI rlang rstudioapi scales shiny shinyWidgets stringi]; }; esreg = derive2 { name="esreg"; version="0.5.0"; sha256="1njwqm3hrcxwl6y7gwa4zq0q5139293qk503ahw23dxwzdsiy2z5"; depends=[Formula quantreg Rcpp RcppArmadillo]; }; + ess = derive2 { name="ess"; version="1.0"; sha256="0nqmpih9iyny4ss6llhjq08lfc8n0znz0fdmsjn1js48r85rcqxb"; depends=[igraph Matrix Rcpp]; }; essHist = derive2 { name="essHist"; version="1.2.2"; sha256="0rvlxfcl42h4pjqf37mx7bc4k21iwvnys6l5rf2jsl7yk1b9hmbn"; depends=[Rcpp]; }; essurvey = derive2 { name="essurvey"; version="1.0.5"; sha256="078bm5knrhij4rdv7hqv5ci0dfdci7lw4yrqbikp8miapivv88vp"; depends=[haven httr rvest tibble xml2]; }; estatapi = derive2 { name="estatapi"; version="0.4.0"; sha256="0wp5w9w0b832fnl7kchjqmychnf5896q50grw8hwdc1km14dfzkg"; depends=[dplyr httr purrr readr rlang tibble]; }; estimability = derive2 { name="estimability"; version="1.3"; sha256="0cifdaa71spkcxl4db4z884jrya865sg3dhcv4isd8fnzg2pjcd3"; depends=[]; }; estimatr = derive2 { name="estimatr"; version="0.22.0"; sha256="1kfih2fak7w9zqbhjgfrysdzrk4lpcx9p23x0gys4f9hxl9j1pm2"; depends=[Formula generics Rcpp RcppEigen rlang]; }; - estmeansd = derive2 { name="estmeansd"; version="0.2.0"; sha256="07xbdsfz8vidp8pv2ix5g2y6y2cks14fzbjx74pa17696rnklrw3"; depends=[metaBLUE]; }; + estimraw = derive2 { name="estimraw"; version="1.0.0"; sha256="0z591mblbzc3qv9pyv8zn0r5r3d8f1l02sxdc649gl1lb40kalz0"; depends=[dplyr]; }; + estmeansd = derive2 { name="estmeansd"; version="0.2.1"; sha256="053mf9yq095dvlz2cj5haav6yabvgj78qpp411xd9nr1ac17jxz9"; depends=[metaBLUE]; }; estout = derive2 { name="estout"; version="1.2"; sha256="0whrwlh4kzyip45s4zifj64mgsbnrllpvphs6i5csb7hi3mdb3i5"; depends=[]; }; - estprod = derive2 { name="estprod"; version="1.1"; sha256="15grcpyhaazd1sl8544gx4zpjqi9p17d6siyb6a1ykzzyy1v1fln"; depends=[boot Formula gmm lazyeval minpack_lm]; }; - estudy2 = derive2 { name="estudy2"; version="0.9.1"; sha256="1hc90jcnbb69f8p5h2vv6qlnx2n1pzdpbk4xcqw6mi7472dsmz7l"; depends=[matrixStats quantmod Rcpp zoo]; }; - esvis = derive2 { name="esvis"; version="0.3.0"; sha256="0h64m3ay4q1l7rgz7vscpnh2x6gkxzzkqkam1hkfnvmxiy2a95f2"; depends=[dplyr ggplot2 Hmisc magrittr purrr rlang sfsmisc tibble tidyr]; }; + estprod = derive2 { name="estprod"; version="1.2"; sha256="0pnpg8w6i1dmkcn6afj2jsm5mzvbxka80np1bldcxgmylrp5s35p"; depends=[boot Formula gmm lazyeval minpack_lm]; }; + estudy2 = derive2 { name="estudy2"; version="0.9.2"; sha256="07shz2lvfz19khy97a0zfj2l4w6z3vibk8a8r6b5afs8w3a66yaa"; depends=[matrixStats quantmod Rcpp zoo]; }; + esvis = derive2 { name="esvis"; version="0.3.1"; sha256="0bb91khnrn8v3d6hbbin72032w7w8p0jchbr0bzwyfq5f6l4hwka"; depends=[dplyr ggplot2 Hmisc magrittr purrr rlang sfsmisc tibble tidyr]; }; etable = derive2 { name="etable"; version="1.2.0"; sha256="17xahaf2fz1qgqjaw8qbnss95il6g47m3w00yqc5nkvv37gs0q7c"; depends=[Hmisc xtable]; }; - etasFLP = derive2 { name="etasFLP"; version="1.4.0"; sha256="04d526yajakzivlcsz8631p0j482cbbgfpdmzkc9zr1m4495xxif"; depends=[fields mapdata maps rgl]; }; + etasFLP = derive2 { name="etasFLP"; version="2.1.0"; sha256="1dpiilb2ylkk1fidjd1x3s9n1pj9h66yg2wx4faxbn69dkky9qnd"; depends=[fields mapdata maps]; }; ether = derive2 { name="ether"; version="0.1.6"; sha256="1f3phh5vdfvlxqrpzsn6ysz0q3mbhr862fzsd3sp8m8qhry86cbx"; depends=[dplyr httr jsonlite Rmpfr]; }; ethnobotanyR = derive2 { name="ethnobotanyR"; version="0.1.7"; sha256="13xbiywrw6ixby9s1ipwb45p9c96d75vw906fpzy6axdv2c4pp70"; depends=[circlize cowplot dplyr ggplot2 ggridges magrittr reshape]; }; - etl = derive2 { name="etl"; version="0.3.8"; sha256="19m1sp3ryqb1gw7i9lh8dpmwbgy0c0dpsivj27wkr36bdhfvrfls"; depends=[DBI downloader dplyr janitor lubridate readr rlang rvest stringr tibble usethis xml2]; }; + etl = derive2 { name="etl"; version="0.3.9"; sha256="133kas3pf863dlgxjhl2x61xkjl5vndsav69zskj9ngz875avjm2"; depends=[DBI downloader dplyr fs janitor lubridate readr rlang rvest stringr tibble usethis xml2]; }; etm = derive2 { name="etm"; version="1.1"; sha256="02yvh473l5qajaymhsxwb235a9r7q3nsig9a9mrfca68xih8yvgd"; depends=[data_table lattice Rcpp RcppArmadillo survival]; }; etma = derive2 { name="etma"; version="1.1-1"; sha256="0g9244yx50y1gw0f37hskbcgyv4nldmzr86v3rmf3afabmjbyzjj"; depends=[]; }; etrunct = derive2 { name="etrunct"; version="0.1"; sha256="0ayazgyqlc8jcqr03cwfmfhm4pck6xri1r6vkgqy4arqkrrnrcqr"; depends=[]; }; eudract = derive2 { name="eudract"; version="0.9.2"; sha256="1yl72vhfaqq005h00bxafdqxpbm0qf9349gd9fq80h5vy20qrm3q"; depends=[dplyr magrittr tidyr xml2 xslt]; }; eulerian = derive2 { name="eulerian"; version="1.0"; sha256="0yhpnx9vnfly14vn1c2z009m7yipv0j59j3s826vgpczax6b48m0"; depends=[graph]; }; eulerr = derive2 { name="eulerr"; version="6.1.0"; sha256="1r7y01vj293r1lhxk4anqqq6k2gnflzx2a2sfsyf7ccqmw95w0cj"; depends=[GenSA polyclip polylabelr Rcpp RcppArmadillo]; }; - europepmc = derive2 { name="europepmc"; version="0.3"; sha256="1ngqs1sqzkbwv98dd5z4cxj8bnz41wyd0g060a2vpqi3s99s4i2h"; depends=[dplyr httr jsonlite plyr progress purrr urltools xml2]; }; + europepmc = derive2 { name="europepmc"; version="0.4"; sha256="174nnyc2mbgqxb5kgqabn1vf71c2mps7ig2bclq4is0f7nb64pym"; depends=[dplyr httr jsonlite plyr progress purrr rlang tibble tidyr urltools xml2]; }; europop = derive2 { name="europop"; version="0.3.1"; sha256="1ym257bxr4a0dmln1j8x3pf87wrryzgqyzhvk61whc6n2bj62x1s"; depends=[]; }; eurostat = derive2 { name="eurostat"; version="3.6.1"; sha256="1l2j9fdq33ivb3wns5bdr1dccaf494vwbyya3f2gz2g8mc2qpn0a"; depends=[broom classInt countrycode curl dplyr httr jsonlite lubridate RColorBrewer readr RefManageR sf sp stringi stringr tibble tidyr tidyselect]; }; - evabic = derive2 { name="evabic"; version="0.0.1"; sha256="196gmq8v8a45zkk4qqr3hzbrrxnmwryb0q81bqcdap5zf4w7153x"; depends=[]; }; + evabic = derive2 { name="evabic"; version="0.0.3"; sha256="0wd5wjsj9gbvbncaa97g1sp0211aq3nn5jc91lvhka6h34wxkcgc"; depends=[]; }; evalITR = derive2 { name="evalITR"; version="0.1.0"; sha256="05nqcy9x3f2ks9xvzd3cd000q2kybdycgrlvz5pv7ipw1dlysgg2"; depends=[]; }; evaluate = derive2 { name="evaluate"; version="0.14"; sha256="0a2y7j534gbgixkwj9r1z76l2vssw4g1hznzbpclc076wkdqpj58"; depends=[]; }; evaluator = derive2 { name="evaluator"; version="0.4.2"; sha256="0k2fwim023lbnxq67hhv03cds824x8n374pnqsk67ajgahxwh3by"; depends=[cli crayon dplyr extrafont ggplot2 magrittr mc2d purrr readr readxl rlang rstudioapi scales stringi tibble tidyr vctrs viridis]; }; @@ -7529,12 +7777,15 @@ in with self; { event = derive2 { name="event"; version="1.1.1"; sha256="0w3v8j61y7vr0cjl8a1rkvi4pyjlfhmzzn1n4dgkivac4iafzqjj"; depends=[rmutil]; }; eventInterval = derive2 { name="eventInterval"; version="1.3"; sha256="0nybzy2mpmazcvz06mkv7l9741mjm3i2q2sindq0777vb2k4504v"; depends=[MASS]; }; eventdataR = derive2 { name="eventdataR"; version="0.2.0"; sha256="11apbbj68x1kxpwvihf4ng7wxy54jl1aw7r9hyq6gn7h8sk6lpjn"; depends=[]; }; + eventr = derive2 { name="eventr"; version="1.0.0"; sha256="08ljjvfrnfmi49b9bgizvvswxydln8ny901grn5j288pq0djjqyk"; depends=[dplyr magrittr purrr]; }; events = derive2 { name="events"; version="0.5"; sha256="1zka4ygymifs8snd7cabl11b5lg3f8g8370dkm9ybl40bn8vvqq2"; depends=[]; }; eventstream = derive2 { name="eventstream"; version="0.1.0"; sha256="0imrs872b6fjvw74smniiiicvizyign6wmwwybljk704cshzcy2f"; depends=[abind AtmRay changepoint dbscan glmnet MASS tensorA]; }; + eventstudies = derive2 { name="eventstudies"; version="1.2.2"; sha256="01vpd0gnxaibxn3nq6618rxlwapm86idz86n0wj5kfz4a9kj7lsx"; depends=[boot sandwich testthat xts zoo]; }; evgam = derive2 { name="evgam"; version="0.1.2"; sha256="0wnyrvfg1pj1adwmsvqwpnz31pfhj6vdsivj2mmdzqh4milf9l22"; depends=[mgcv Rcpp RcppArmadillo]; }; evian = derive2 { name="evian"; version="2.1.0"; sha256="1slnzq55gg3p16fs22v69mafiggiy5f70sj8fh65lc0hphybh6w2"; depends=[doParallel foreach ProfileLikelihood sandwich]; }; evidence = derive2 { name="evidence"; version="0.8.10"; sha256="02kqk95kx4nv13fg6z55a5rv6sq6lv8azg0jjxbkg1j6hg15p7ai"; depends=[LaplacesDemon lattice LearnBayes loo rstan rstanarm]; }; evidenceFactors = derive2 { name="evidenceFactors"; version="1.8"; sha256="0g9w1q8ir6qmvk5vvbpipiyias7nj74ks2h94ja7al8sz68gralx"; depends=[sensitivitymv]; }; + evident = derive2 { name="evident"; version="1.0.2"; sha256="1dniqb6k28c7fisav7yvi94qfl582hssf78qxxmpj4yp58jw1i6z"; depends=[DOS2 MASS sensitivity2x2xk sensitivitymult sensitivitymv senstrat]; }; evir = derive2 { name="evir"; version="1.7-4"; sha256="1h7a7z7v5k33y5hsdfczsri3vpbwspfgazhv4saknv2h11rgfpki"; depends=[]; }; evmix = derive2 { name="evmix"; version="2.12"; sha256="02rabc9snci00s1x7h0svfr66lmw1wjcdg0149wc52mnccsdaivf"; depends=[gsl MASS SparseM]; }; evobiR = derive2 { name="evobiR"; version="1.1"; sha256="0502xj1gv2g943vfqyllz4sr5z4mixf5vqlqi2v96mymnv9iwsr8"; depends=[ape geiger phytools seqinr shiny]; }; @@ -7544,17 +7795,18 @@ in with self; { evt0 = derive2 { name="evt0"; version="1.1-3"; sha256="08sbyvx49kp3jsyki60gbbnci26d6yk0yj2zcl4bhfac8c3mm6ya"; depends=[evd]; }; evtclass = derive2 { name="evtclass"; version="1.0"; sha256="1ny43sry257cxlg56f0lj1szv9ci3ymskj6l5sn43l5a2pq62g4l"; depends=[evd fitdistrplus RANN]; }; evtree = derive2 { name="evtree"; version="1.0-8"; sha256="1dmzbsyrg8wwzzqcxzqmgm7yai37lh9lkjhizhr2h0k03s5xdv1k"; depends=[partykit]; }; - ewoc = derive2 { name="ewoc"; version="0.2.0"; sha256="0kanx14fhcbqz6gpyj7628vgy9fwz3ji5mkd4107b8pgpz2hkg00"; depends=[coda doParallel foreach Formula ggplot2 rjags]; }; + ewoc = derive2 { name="ewoc"; version="0.3.0"; sha256="0r8b5vq0qzp3f0dasxmrngldqlymca90sj019rzs1a0qf28wlgbr"; depends=[coda doParallel doRNG foreach Formula ggplot2 rjags]; }; exCon = derive2 { name="exCon"; version="0.2.5"; sha256="0gqnv01dw4ncf3x3p74pc6f14a1ixq7icl2p18hsmvxdqqg7kgy7"; depends=[jsonlite]; }; exPrior = derive2 { name="exPrior"; version="1.0.1"; sha256="05z7dx1qfwcagadlw8wrf30071ssawv8njm2q6jaa4r4in0i5l1s"; depends=[coda ggplot2 gtable nimble plyr reshape2]; }; - exact2x2 = derive2 { name="exact2x2"; version="1.6.3.1"; sha256="0yl0ylgk83w076vbda7yfdvfbwwhhcp89bcv3i6418rz8y7k1ili"; depends=[exactci ssanv]; }; + exact2x2 = derive2 { name="exact2x2"; version="1.6.5"; sha256="05xkzyyk1dfxq2f6aczwiyinznaxfd6ipd680zsbcd0iq44n7wd1"; depends=[exactci ssanv]; }; exactLoglinTest = derive2 { name="exactLoglinTest"; version="1.4.2"; sha256="0j146ih9szzks9r45vq1jf47hrwjq081q1nsja5h1gpllks8217h"; depends=[]; }; exactRankTests = derive2 { name="exactRankTests"; version="0.8-31"; sha256="1154dkcid3njhamdp87qs9bnx7l8bdqkcjsds9q9f2xmizs9x8gw"; depends=[]; }; exactci = derive2 { name="exactci"; version="1.3-3"; sha256="03r35f6dyrck5pf43ypb1sjwfnvkhjkm1mbms3wh67ayfs2ypn0s"; depends=[ssanv]; }; - exactextractr = derive2 { name="exactextractr"; version="0.2.1"; sha256="0wspmg4vb96yq38g17f10q54k8ijpzlhh3hac1d2dn9zgk3riffh"; depends=[raster Rcpp sf]; }; + exactextractr = derive2 { name="exactextractr"; version="0.4.0"; sha256="0r4276f95cxpy1df5m8z99nqmp1kpa7yps2g2yjnhawnajg6bcxn"; depends=[raster Rcpp sf]; }; exactmeta = derive2 { name="exactmeta"; version="1.0-2"; sha256="1v807ns799qajffky4k18iah0s3qh2ava6sz5i85hwx9dhkz19h4"; depends=[]; }; exampletestr = derive2 { name="exampletestr"; version="1.6.1"; sha256="1szkx35wn24yi6iw6hkl85hzwqd8glvjq69hsypsxg1k4r1i99wg"; depends=[checkmate filesstrings fs magrittr ore purrr readr rlang roxygen2 rstudioapi stringr styler usethis withr]; }; exams = derive2 { name="exams"; version="2.3-6"; sha256="1cn0gmaayv857zl7l7zmnblmpx84qkjxqrigrymy578y04qjc4zx"; depends=[]; }; + exams_mylearn = derive2 { name="exams.mylearn"; version="1.1"; sha256="0smsa22sm4xdjwsdyzicbznkhx980n72syihx04gxhn50w9495ky"; depends=[exams glue stringi stringr xml2]; }; exceedProb = derive2 { name="exceedProb"; version="0.0.1"; sha256="02pb8b0rxygbv6501rcr2hb0bhz1r78k5znav161kk25fb9bxs5v"; depends=[BH Rcpp]; }; excelR = derive2 { name="excelR"; version="0.4.0"; sha256="1pb4sy54zjv5vrh7gjjv7qlpab74km6mfsmfyl0yhmr0jx01hrw0"; depends=[htmlwidgets jsonlite]; }; excerptr = derive2 { name="excerptr"; version="2.0.0"; sha256="1xglpg9i45dd103ahj46lin42x9c8lgff2b5c4k3799gaki9sjzz"; depends=[checkmate reticulate]; }; @@ -7562,7 +7814,7 @@ in with self; { exdex = derive2 { name="exdex"; version="1.0.1"; sha256="15wdi24fq8q4ja4527k1adv6lkzyhylp8nwlsrb91q0sbmmprrqs"; depends=[chandwich Rcpp RcppArmadillo RcppRoll]; }; exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; }; exifr = derive2 { name="exifr"; version="0.3.1"; sha256="0394f04wq5dnqbnbaq7gxv4ggis4kf3b8dhhjzlybsbip6nmv54x"; depends=[curl jsonlite plyr rappdirs tibble]; }; - exiftoolr = derive2 { name="exiftoolr"; version="0.1.2"; sha256="18q23lmazqw5vjvpz9kbd8i8ljchm8nakh726ic3qqzsckl98psp"; depends=[curl jsonlite]; }; + exiftoolr = derive2 { name="exiftoolr"; version="0.1.3"; sha256="1gjdw9bdk3f9s29wd0657pmlv2mhblqmvxqq79q4s470abh0bbin"; depends=[curl jsonlite zip]; }; exp2flux = derive2 { name="exp2flux"; version="0.1"; sha256="1b3ychb4wcf6dbccx2ddms5xygdgc296cnw4474fm81yrfjznplv"; depends=[gage igraph sybil]; }; expSBM = derive2 { name="expSBM"; version="1.3.5"; sha256="0k8nkwqrcmmhv0x8a2np1rm5cyc9glyvndwdbnp03v0wrg8121sw"; depends=[blockmodels gtools mclust Rcpp RcppArmadillo]; }; expandFunctions = derive2 { name="expandFunctions"; version="0.1.0"; sha256="0661l4ab0xhjidmh8ycvymhp3wgxafm7nd1c59bfpxhyhz76n1p4"; depends=[glmnet orthopolynom plyr polynom]; }; @@ -7570,23 +7822,23 @@ in with self; { experiment = derive2 { name="experiment"; version="1.2.0"; sha256="0f8h4pj2y7cd2s1q44q4mrg9cirnpz0bkn4xm04hz1rpjxb4xlv1"; depends=[boot MASS]; }; expert = derive2 { name="expert"; version="1.0-0"; sha256="0y9vcigvzhymalpv31b9nvmr86z1dz7x29yj838vks0dsv23rgrf"; depends=[]; }; expint = derive2 { name="expint"; version="0.1-6"; sha256="0iai25cglcdnf44d2d1fz1xpw4q600my4zq4493fk4cs5673mlf7"; depends=[]; }; - explor = derive2 { name="explor"; version="0.3.5"; sha256="1v3z067w5kskwr0wmrr26m3yfsmg9pf17ma9ck2srgyxqmddc0sj"; depends=[dplyr DT formatR ggplot2 highr RColorBrewer scatterD3 shiny tidyr]; }; + explor = derive2 { name="explor"; version="0.3.6"; sha256="02kqma7qi6jabmbcp4fmplrh0xix3r729qc299rghcxvd4s9cplv"; depends=[dplyr DT formatR ggplot2 highr RColorBrewer scatterD3 shiny tidyr]; }; explore = derive2 { name="explore"; version="0.5.5"; sha256="0xivjnbic4jnbr21l1rvs2799qhkk3jrwsgdlgnmr6s6ddnqiif7"; depends=[assertthat broom DBI dplyr DT forcats ggplot2 gridExtra magrittr MASS odbc rlang rmarkdown rpart rpart_plot shiny stringr tibble]; }; exploreR = derive2 { name="exploreR"; version="0.1"; sha256="154j5wiiy9vqdvh1qvdkz2fdp2phcygbbjl7nj5nkn07xwxbsc77"; depends=[ggplot2]; }; - expm = derive2 { name="expm"; version="0.999-4"; sha256="15k0acg2aqb2ajhwal6l7vhhp03m4lg579805d34554cl0kn9l2q"; depends=[Matrix]; }; + expm = derive2 { name="expm"; version="0.999-5"; sha256="0y98ya8rhy891nysjlzzy7kcm13dsz8gvxwzvbkmcp1xx0vicxc7"; depends=[Matrix]; }; expose = derive2 { name="expose"; version="0.0.3"; sha256="0dlxlxm3g9d8vmgp13i1825z1jzah94ih1vyif46s43xq0nf9anj"; depends=[e1071 foreach gam ggplot2 glmnet Matrix nnet polspline RColorBrewer Rcpp repmis SuperLearner xgboost]; }; expp = derive2 { name="expp"; version="1.2.4"; sha256="00r5f80wnz91n0ksp1dvrxpd6zyfis2v3rizsnm7qqnnwj3d4q1c"; depends=[deldir rgeos sp spatstat spdep]; }; expperm = derive2 { name="expperm"; version="1.6"; sha256="0cybna0q3qn3slyc4lv5rby4pr0xkwq0h6n7hl1zhsaqv4c2zc5b"; depends=[Rcpp]; }; expsmooth = derive2 { name="expsmooth"; version="2.3"; sha256="0alqg777g7zzbjbg86f00p2jzzlp4zyswpbif7ndd0zr8xis6zdc"; depends=[forecast]; }; - expss = derive2 { name="expss"; version="0.10.2"; sha256="15f5xdapqx3bhw3xdlx5v76mmbyd72qkyn1adwxiclx03sylqjf2"; depends=[data_table foreign htmlTable magrittr matrixStats]; }; - expstudies = derive2 { name="expstudies"; version="0.0.5"; sha256="07li3lf7gnziws452arv38dayc30dym30qkw5d3ifp6za1aih5pv"; depends=[dplyr lubridate magrittr Rcpp]; }; + expss = derive2 { name="expss"; version="0.10.6"; sha256="03182c9ispbk52akczcm9h5fkgmvxk7d8166dpmdgamzb2s55fyr"; depends=[data_table foreign htmlTable magrittr matrixStats]; }; exptest = derive2 { name="exptest"; version="1.2"; sha256="0wgjg62rjhnr206hkg5h2923q8dq151wyv54pi369hzy3lp8qrvq"; depends=[]; }; exreport = derive2 { name="exreport"; version="0.4.1"; sha256="0vj60rchhrc5q6x1kv7b95fcmh2a5qynli2w54rrrw1nx54xm8c2"; depends=[ggplot2 reshape2]; }; exsic = derive2 { name="exsic"; version="1.1.1"; sha256="1k6nqs9i4iivxnk4nkimp6zvdly274wibkmx9n0wz01gnzxqil0p"; depends=[markdown stringr]; }; - extRC = derive2 { name="extRC"; version="1.0"; sha256="1cawfkd98n70y54qg8i2h82xrrgygr48sq31yzx9hllkx33pk97d"; depends=[MASS]; }; - extRemes = derive2 { name="extRemes"; version="2.0-11"; sha256="0hmgynxhzswqnhwb2sxrkczgam8c17s3vpxqc5bcz0bwczpxxyvm"; depends=[distillery Lmoments]; }; + extRC = derive2 { name="extRC"; version="1.1"; sha256="1zjm1wxd51r10q324xbjmmyk4rhhih9ajmvgnjsc7glfcpzr0rp5"; depends=[MASS]; }; + extRemes = derive2 { name="extRemes"; version="2.0-12"; sha256="0wldzvj1h93jksq31dw9zgnr1wrqwmfr9qwmg7qk7nznsn2yy1h2"; depends=[distillery Lmoments]; }; extWeibQuant = derive2 { name="extWeibQuant"; version="1.1"; sha256="08dzw5xfgqx0c7ac632c5mg5jmjjw7wwpcr4c9lvz5rv72ykh2rh"; depends=[]; }; extdplyr = derive2 { name="extdplyr"; version="0.1.5"; sha256="1zbnp0h0lv1dr40dhdw6ii8rmc5lxcq4wjsm83xpd3y8x9xpglnl"; depends=[dplyr lazyeval tidyr]; }; + extendedFamily = derive2 { name="extendedFamily"; version="0.1.1"; sha256="02cl7i3hvk9r5aq0ahj59lghmlbh28avh4fama9ixhz5zb95l3w1"; depends=[assertthat]; }; exteriorMatch = derive2 { name="exteriorMatch"; version="1.0.0"; sha256="0cdfj1n502iws1g03rk7x0c18zyazqf3vci9kjm6lrv4j2qwrvip"; depends=[]; }; extfunnel = derive2 { name="extfunnel"; version="1.3"; sha256="162w5b2wjs3yqy8jisamsapav6swa8sskf1b6x5hglnrv3i4qyyy"; depends=[rmeta]; }; extlasso = derive2 { name="extlasso"; version="0.2"; sha256="05774y0i01lrbyws6zx5ymhcglllv1wc7gzrnyx8i5d1lxdinsyd"; depends=[]; }; @@ -7596,27 +7848,30 @@ in with self; { extrafont = derive2 { name="extrafont"; version="0.17"; sha256="0b9k2n9sk23bh45hjgnkxpjyvpdrz1hx7kmxvmb4nhlhm1wpsv9g"; depends=[extrafontdb Rttf2pt1]; }; extrafontdb = derive2 { name="extrafontdb"; version="1.0"; sha256="115n42hfvv5h4nn4cfkfmkmn968py4lpy8zd0d6w5yylwpzbm8gs"; depends=[]; }; extraoperators = derive2 { name="extraoperators"; version="0.1.1"; sha256="1clyp97ssmdq9ggbv3w5yskx7khnlm4ji7ym3k3b4bx1pazcw4q4"; depends=[]; }; + extras = derive2 { name="extras"; version="0.0.1"; sha256="0pzb8mfi0x82apxmz1ncx3dmn0bc5bdklvgcfsxcab9k7q1xl6fa"; depends=[chk]; }; extraterrestrial = derive2 { name="extraterrestrial"; version="0.1.0"; sha256="0clss1zwgw1497n2xif82kplr1w1ajs4xs02041ads3l8craj7y1"; depends=[]; }; extremeIndex = derive2 { name="extremeIndex"; version="0.0.2"; sha256="1zdw6ik2jh1fir01ay3ynw1l756ba05d5vqqcphnawvg0jkvhxvk"; depends=[boot evd evir gmm goftest]; }; extremeStat = derive2 { name="extremeStat"; version="1.4.0"; sha256="0fvkvlm47ri05w9h5qa937ijsc5lg51jc825wq9pmn7aiv58yxzm"; depends=[berryFunctions evd evir extRemes fExtremes ismev lmomco pbapply RColorBrewer Renext]; }; extremefit = derive2 { name="extremefit"; version="1.0.2"; sha256="07gx6dp0kz4y1jn90hsfvkhn6k7i4flh7ghdz9v5nwda86f55q2s"; depends=[]; }; - extremevalues = derive2 { name="extremevalues"; version="2.3.2"; sha256="0pyngxljdnjwnbwcb0gmxcirv70r1s1wyq4m1wm5rprpdj8v9xil"; depends=[gWidgets gWidgetstcltk]; }; + extremevalues = derive2 { name="extremevalues"; version="2.3.3"; sha256="0ijha5zzmv3qr0czm4qxk28kg3ql5jh3nk9fr0flzl8d9n3z0jx6"; depends=[gWidgets2 gWidgets2tcltk]; }; extremis = derive2 { name="extremis"; version="0.90"; sha256="1cnwn70d9swks5b2y915l18gky9v23vaqlaaggshi0ghn3snb4sm"; depends=[emplik]; }; extremogram = derive2 { name="extremogram"; version="1.0.2"; sha256="13k869v6j4ik9p8w0gf1absvb45xbd3nnwghsz0ix7y0vyvry358"; depends=[boot MASS]; }; - exuber = derive2 { name="exuber"; version="0.3.0"; sha256="1g0cr7lgj8j5qdvrm7zmafhqafi1iwln590pcmfrfs37cynd5fkx"; depends=[cli doSNOW dplyr foreach generics ggplot2 glue gridExtra lubridate purrr Rcpp RcppArmadillo rlang tibble tidyr zoo]; }; + exuber = derive2 { name="exuber"; version="0.4.1"; sha256="1k55mx595v0alvwm7fi5vhw3kf0rhqjaf7431pnjcqc4n050zwx8"; depends=[cli doRNG doSNOW dplyr foreach generics ggplot2 glue lubridate purrr Rcpp RcppArmadillo rlang tibble tidyr vctrs]; }; + eye = derive2 { name="eye"; version="0.1.0"; sha256="08kvjbr6lmhawd8zxipyz0js4r6mnbknr8cgz6951d8zynfg0426"; depends=[cli dplyr english lubridate magrittr purrr rlang stringr tibble tidyr tidyselect]; }; + eyeRead = derive2 { name="eyeRead"; version="0.0.4"; sha256="0f6knzr4fdipbrvcsk0q9yjvkjjyc4wc252lq2s41gdvj3hv575d"; depends=[data_table tibble tidyr]; }; eyeTrackR = derive2 { name="eyeTrackR"; version="1.0.1"; sha256="14m7l8v0ry1ami1jl0xjp743m1ycklgfwi06vk5amppdp5w3w3qr"; depends=[data_table plyr stringr]; }; eyelinker = derive2 { name="eyelinker"; version="0.2.0"; sha256="14rfcdxad9iazwd46q6bm8gg1ryh6s8kf7arj00hhb7xz3gvk9c2"; depends=[intervals readr stringi stringr tibble]; }; eyetracking = derive2 { name="eyetracking"; version="1.1"; sha256="0ajas96s25hjp3yrg42hp78qjhl1aih04mjirkskx32qsyq5hfpv"; depends=[]; }; - eyetrackingR = derive2 { name="eyetrackingR"; version="0.1.8"; sha256="18bz8fhy2hph7h8mm7hdhjfhi5gznj4qcl05rk3n99hkxl24qn73"; depends=[broom dplyr ggplot2 lazyeval purrr tidyr zoo]; }; ez = derive2 { name="ez"; version="4.4-0"; sha256="0a58s94x576dfz7wcbivrr2hmdh5x1vy16zwkqp9fmdzqx38pagq"; depends=[car ggplot2 lme4 MASS Matrix mgcv plyr reshape2 scales stringr]; }; ezCutoffs = derive2 { name="ezCutoffs"; version="1.0.1"; sha256="04ah9dbfwl89xi0di0dslaf8a39nynxymm8lbacgd88al5dg7y1n"; depends=[doSNOW foreach ggplot2 lavaan moments progress]; }; - ezcox = derive2 { name="ezcox"; version="0.4.0"; sha256="1cfrcgzp8qkih0x2djbs3hlsgr0wkdvqvy71pcqn2zxlim0r5xvv"; depends=[dplyr forestmodel magrittr purrr rlang survival]; }; + ezEDA = derive2 { name="ezEDA"; version="0.1.0"; sha256="1qxifszjfjm1smvl9igpjjjfncb690mim3bwfak5wp0yzjxcrvab"; depends=[dplyr GGally ggplot2 magrittr purrr rlang scales tidyr]; }; + ezcox = derive2 { name="ezcox"; version="0.7.0"; sha256="0z6605gz79pxax08z3s66gkzvdgpcl6c0q4ds0a6ar1afcmhn4ja"; depends=[dplyr forestmodel ggplot2 magrittr purrr rlang survival]; }; ezec = derive2 { name="ezec"; version="1.0.1"; sha256="0lpx55a8fhy6fqdv3zvzx9mh75q34r71v5kp96hkm9jzl4yvrpd2"; depends=[dplyr drc]; }; ezglm = derive2 { name="ezglm"; version="1.0"; sha256="0x7ffk3ipzbdr9ddqzv0skmpj5zwazkabibhs74faxnld7pcxhps"; depends=[]; }; ezknitr = derive2 { name="ezknitr"; version="0.6"; sha256="060a2175zh1nhzmqgz1mpj2c6721n5w5bv695jj4rbl2s2b2h4qj"; depends=[knitr markdown R_utils]; }; ezmmek = derive2 { name="ezmmek"; version="0.2.1"; sha256="06cjp0hbq4blg7jj0jzp372xi1vgd1nwp27nzfsbchszn3j85lgf"; depends=[assertable dplyr ggplot2 magrittr nls2 purrr scales tidyr]; }; ezpickr = derive2 { name="ezpickr"; version="2.0.0"; sha256="1x7v7zsr8hjrwi48dkryqryp607550gs77b058qcdgcdznlqwzp2"; depends=[haven jsonlite magrittr mboxr purrr readxl rmarkdown stringr textreadr tibble vroom writexl]; }; - ezplot = derive2 { name="ezplot"; version="0.4.0"; sha256="0w3hf0a8q897v452cgr7hkw7354ifmp8paw646sy98n2ykyz506l"; depends=[dplyr forcats ggplot2 rlang]; }; + ezplot = derive2 { name="ezplot"; version="0.6.2"; sha256="078iyzs3qlc6g1hn72ikcz209cr07y11pf43w5x6hiaa7ppmszg7"; depends=[dplyr forcats ggplot2 lubridate rlang tsibble]; }; ezsim = derive2 { name="ezsim"; version="0.5.5"; sha256="03x75vmf75qsmk4zb09j7xrb11w31rpfwd3dvv12nwjgndh9bnld"; depends=[digest foreach ggplot2 Jmisc plyr reshape]; }; fANCOVA = derive2 { name="fANCOVA"; version="0.5-1"; sha256="034m2mmm6wmsjd41sg82m9ppqjf4b1kgw5vl2w7kzqfx0lypaiwv"; depends=[]; }; fAsianOptions = derive2 { name="fAsianOptions"; version="3042.82"; sha256="13p1r93rgnf03wj0kkfpw4w4dlzd1ypkam50xqpjfm38qm4zvkds"; depends=[fBasics fOptions timeDate timeSeries]; }; @@ -7625,7 +7880,7 @@ in with self; { fBonds = derive2 { name="fBonds"; version="3042.78"; sha256="1yb5vyqj66m82xks5qi5cnsppylpprbk656z4lxzg30873hi8pcf"; depends=[fBasics timeDate timeSeries]; }; fCertificates = derive2 { name="fCertificates"; version="0.5-4"; sha256="1a49gkzvb83lqqw65lxlaszpicn663hwi9wrbsb3f6z7znylkzaf"; depends=[fBasics fExoticOptions fOptions]; }; fCopulae = derive2 { name="fCopulae"; version="3042.82.1"; sha256="005ydbgyz7b1g3l2dn4r46113siyza9ag27f51r28md885dnbjpi"; depends=[fBasics fMultivar timeDate timeSeries]; }; - fDMA = derive2 { name="fDMA"; version="2.2.5"; sha256="12frifhrwmkkmlm28nc48985r8543f28xy13nyfa8xigyj3mcz40"; depends=[doParallel foreach forecast gplots iterators itertools MSwM png psych Rcpp RcppArmadillo tseries xts zoo]; }; + fDMA = derive2 { name="fDMA"; version="2.2.6"; sha256="1kz1mksvr7pjkg64mbdlw73575rpr3balcwmbniwdhgmvqv82wk3"; depends=[doParallel foreach forecast gplots iterators itertools png psych Rcpp RcppArmadillo tseries xts zoo]; }; fExoticOptions = derive2 { name="fExoticOptions"; version="3042.80"; sha256="1b3y7j5ywic6xhsj2afq6y5f5l0npgav854rb87938rjckz95d4h"; depends=[fBasics fOptions timeDate timeSeries]; }; fExpressCertificates = derive2 { name="fExpressCertificates"; version="1.3"; sha256="0dcfwl0ib87p748hvwscm5ii9fhfarqfl3zqxa8kin2n0hrvkdb6"; depends=[fCertificates fExoticOptions fOptions Matrix mvtnorm tmvtnorm]; }; fExtremes = derive2 { name="fExtremes"; version="3042.82"; sha256="1n0afql4csgsqf7j9x2v8yxncvpknms643l9knm0fqb4pdbaw58c"; depends=[fBasics fGarch timeDate timeSeries]; }; @@ -7643,20 +7898,21 @@ in with self; { fUnitRoots = derive2 { name="fUnitRoots"; version="3042.79"; sha256="1hsv47dm0hx3s04g9h0bjdgi79zbfihnfxxdc2jskqp94yl7azsy"; depends=[fBasics timeDate timeSeries urca]; }; fabCI = derive2 { name="fabCI"; version="0.1"; sha256="123bc56nnx6hcj257imsd8sc6d0pggw08lf4m0lr90631gcm1mkn"; depends=[]; }; fabMix = derive2 { name="fabMix"; version="5.0"; sha256="1gii3mdii9nw423xxn9mhv1pjbw967wdarn828w04zm9dkdcwm48"; depends=[coda corrplot doParallel foreach ggplot2 label_switching MASS mclust mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; - fable = derive2 { name="fable"; version="0.2.0"; sha256="1z3yaf61zyz92lykzwid4scmfrpy73r7kq4zv01pcj9573p5khy3"; depends=[dplyr fabletools Rcpp rlang tibble tidyr tsibble]; }; - fabletools = derive2 { name="fabletools"; version="0.1.3"; sha256="16lkr26sl88vnww2fsqiqdv4ljk0y1fyha55g0sq4vsnypg9bhdz"; depends=[dplyr generics ggplot2 R6 rlang tibble tidyr tidyselect tsibble vctrs]; }; + fable = derive2 { name="fable"; version="0.2.1"; sha256="1gbzi0g71vdp5yp70msg4qxs45fp8wa2x4byfa8jw67v4gl4xx8y"; depends=[distributional dplyr fabletools Rcpp rlang tibble tidyr tsibble]; }; + fabletools = derive2 { name="fabletools"; version="0.2.0"; sha256="0zgvq3fg6dnj9jv2ksm2zlk0zw1wyna8rww1arz92pnmhgmprwvn"; depends=[distributional dplyr generics ggplot2 lifecycle progressr R6 rlang tibble tidyr tidyselect tsibble vctrs]; }; fabricatr = derive2 { name="fabricatr"; version="0.10.0"; sha256="0kh2mfgyqz3fpilc4wycxj3vihhbdnjzsjrsp88nmsk0p5mjmljj"; depends=[rlang]; }; + fabricerin = derive2 { name="fabricerin"; version="0.1.2"; sha256="0ynvnxzxx1iybyy5pvwfsj5y9jjixyrpji9vcl5fq5mjnpg8mpqk"; depends=[glue htmltools]; }; face = derive2 { name="face"; version="0.1-5"; sha256="0n7vlq29krsdcp8r32irhvf7xbcxy5g7663qncmbhj5x45sviqh6"; depends=[Matrix matrixcalc mgcv]; }; facerec = derive2 { name="facerec"; version="0.1.0"; sha256="1dipcnxjz6yd34w0jrrvj5p0pwdgz1l5m9zvri7mflnz7g34gmaj"; depends=[dplyr httr jsonlite knitr magrittr rlang snakecase stringr]; }; facilitation = derive2 { name="facilitation"; version="0.5.2"; sha256="0gyqa3njyynvdhfziq33xqc7cjhszii67mk8809ncvh6abkdx1hw"; depends=[animation Matrix Rcpp]; }; factoextra = derive2 { name="factoextra"; version="1.0.7"; sha256="1allvdjhd3pq8xz30b1cymwcik5iaahghrjrlnn54cwkfhfg0kv2"; depends=[abind cluster dendextend FactoMineR ggplot2 ggpubr ggrepel reshape2 tidyr]; }; factoptd = derive2 { name="factoptd"; version="1.0.3"; sha256="1ir50im3kr1xhqk4qwrm2h5fq9gqgrwshbamvjlf8n1wnn03mcb6"; depends=[MASS partitions]; }; factor_switching = derive2 { name="factor.switching"; version="1.1"; sha256="126f7939xq3g27yfalp85ivwfpk93fs8gcig037z42i0xsywh9kp"; depends=[coda HDInterval lpSolve]; }; - factorEx = derive2 { name="factorEx"; version="1.0.0"; sha256="12ykf42x5fqddlsvv3556sawfakribj0pwm5vfcg3y2y99a26qxg"; depends=[arm doParallel estimatr foreach genlasso igraph mvtnorm pbapply pbmcapply prodlim sandwich stringr]; }; + factorEx = derive2 { name="factorEx"; version="1.0.1"; sha256="03dgxxykxgq63cgan5gy5vz4hnwqmg48z2wdv8f69mk9452mg9m2"; depends=[arm doParallel estimatr foreach genlasso igraph mvtnorm pbapply pbmcapply prodlim sandwich stringr]; }; factorMerger = derive2 { name="factorMerger"; version="0.4.0"; sha256="127k5h1gbbnjr6gxgck2n9glvvwkd69xq7n6gzmrq8gszk8v1x5m"; depends=[agricolae colorRamps dplyr forcats formula_tools ggplot2 ggpubr knitr magrittr MASS mvtnorm proxy reshape2 scales survival]; }; factorQR = derive2 { name="factorQR"; version="0.1-4"; sha256="1vl01fm5qfyhnqbl5y86vkr50b8cv07vzlqs3v6smqaqq6yp4lv4"; depends=[lattice]; }; factorcpt = derive2 { name="factorcpt"; version="0.1.2"; sha256="17hwlsrj0fx4x05p6xvs6kl43a24icmnrzyvpf2vam5imwvmpvmm"; depends=[doParallel fields foreach iterators Rcpp RcppArmadillo]; }; - factorial2x2 = derive2 { name="factorial2x2"; version="0.1.0"; sha256="186qnz09hkf3njb07rfrs42m3m3288h89ppzlfzrv00765r74yq6"; depends=[mvtnorm survival]; }; + factorial2x2 = derive2 { name="factorial2x2"; version="0.2.0"; sha256="045887hwknwm92wlrp0jlvxj5aal50vpnc7ddbh7c8smawmrdwfd"; depends=[mvtnorm survival]; }; factorplot = derive2 { name="factorplot"; version="1.1-2"; sha256="025lfk122w66yxym3njcpzwnbhg40xi7p1c9vnxczcb8kz31745s"; depends=[multcomp nnet]; }; factorstochvol = derive2 { name="factorstochvol"; version="0.9.3"; sha256="15gamzznss9vfmbvbk61sgabxfsra2i49bs142jl1ahk7wchiskw"; depends=[corrplot GIGrvg Rcpp RcppArmadillo stochvol]; }; factory = derive2 { name="factory"; version="0.1.0"; sha256="1715bx2rn8kk5qd196jnrv5f95l54n4y0aqqdzfkgrmqihcy8ahx"; depends=[purrr rlang]; }; @@ -7666,7 +7922,8 @@ in with self; { fad = derive2 { name="fad"; version="0.2-1"; sha256="09lbakil37fyji3bwydspzvrnwm0992x8783zyyv2jk37y0wr1ip"; depends=[Matrix Rcpp RSpectra]; }; fail = derive2 { name="fail"; version="1.3"; sha256="0vfm6kmpmgsamda5p0sl771kbnsscan31l2chzssyw93kwmams7d"; depends=[BBmisc checkmate]; }; fairadapt = derive2 { name="fairadapt"; version="0.1.0"; sha256="01ing7mm1asfgh4w8cc7f7fpv13lja97vv5skk5bri00zycwcqfd"; depends=[ranger]; }; - fairness = derive2 { name="fairness"; version="1.0.1"; sha256="1n17vrp0a3zii3444a2a7k33ffmyxmm15c8m7ln2fypya1z2pc5l"; depends=[caret devtools e1071 ggplot2 pROC]; }; + fairml = derive2 { name="fairml"; version="0.2"; sha256="07b1gxzxpjc36pic0ayjmdizpkcnrv9rra1h5r75hy8lkf554qqd"; depends=[optiSolve]; }; + fairness = derive2 { name="fairness"; version="1.1.1"; sha256="05fimbxikippgad3h0glvlwy6745gyakv2hnhp4v58jbzy79yz7q"; depends=[caret devtools e1071 ggplot2 pROC]; }; faisalconjoint = derive2 { name="faisalconjoint"; version="1.15"; sha256="08sb4za8qyadvigq2z7b0r44qk2lpahpnz9nv16xfjb1zhdkz5w3"; depends=[]; }; fakeR = derive2 { name="fakeR"; version="1.0"; sha256="0f4ngnd8s34j1327zp3aqnsiw0gfxkp1i24ng20hrmfl13s1qmxp"; depends=[mvtnorm polycor pscl VGAM]; }; fakemake = derive2 { name="fakemake"; version="1.7.1"; sha256="0mckcgc12yxmpsgkcnmaf1pa634rz8x1zc97h023pnsd1cdwsp4l"; depends=[callr igraph MakefileR withr]; }; @@ -7680,10 +7937,12 @@ in with self; { fancycut = derive2 { name="fancycut"; version="0.1.2"; sha256="1xg5qjxf77g10h07x6rvb8c3klc9gbr77bkw352qpas268pkswl2"; depends=[]; }; fanplot = derive2 { name="fanplot"; version="3.4.2"; sha256="169n9ghm4x6fhd97xz1mqjj0f5hldjkrp926iqk2qqanchnhfvh6"; depends=[]; }; fansi = derive2 { name="fansi"; version="0.4.1"; sha256="028ywjy538psnmdnddvy5jr3idzffr4hikzr4x97x0m30g4fws9w"; depends=[]; }; - faoutlier = derive2 { name="faoutlier"; version="0.7.2"; sha256="0h2azbkxpz03qjmq558mh7dkpv87vbvminvg69wqsx21m6hdl5r3"; depends=[lattice lavaan MASS mirt mvtnorm pbapply sem]; }; + faoutlier = derive2 { name="faoutlier"; version="0.7.4"; sha256="07nnnyj0j5g72a0sa3v7hrnx900i8a1yhlp0wmiwabskikz36iw7"; depends=[lattice lavaan MASS mirt mvtnorm pbapply sem]; }; + faq = derive2 { name="faq"; version="0.1.0"; sha256="1ha4y5kj60mv10v7lq21f2py8vjcjcnn7h6vbcaa1kg574vlqsd0"; depends=[htmlwidgets jsonlite]; }; far = derive2 { name="far"; version="0.6-5"; sha256="18lj2mgnn9s59ypkr19zzv0sffwpx9mgk975xmpvw4kkl84dykis"; depends=[nlme]; }; faraway = derive2 { name="faraway"; version="1.0.7"; sha256="0lalf52y9rb4zdb4kpscwddb4zy0af7r5sm7lx8s9jaqykrwrfq6"; depends=[lme4 nlme]; }; farff = derive2 { name="farff"; version="1.1"; sha256="0d3d343jjjwsb132ph12h3r044j3bc4jp94ayikjyq1lmwwsfr4k"; depends=[BBmisc checkmate readr stringi]; }; + farrell = derive2 { name="farrell"; version="0.2.0"; sha256="00scn4qmk8gc8m45bfl45swvz00fckwv53wxdynr3bxqcmyqgpkb"; depends=[Benchmarking data_table dplyr DT magrittr miniUI readr rlang shiny shinycssloaders shinyWidgets tibble]; }; farver = derive2 { name="farver"; version="2.0.3"; sha256="1k75v07dsfkjra2gsgxg9s55cw3b46b1nh960kqphq7cg7gr058f"; depends=[]; }; fasjem = derive2 { name="fasjem"; version="1.1.2"; sha256="1bbrcyyg96hakgla3604byrkn9034197vy2is048kdq20yr2y11n"; depends=[igraph]; }; fasstr = derive2 { name="fasstr"; version="0.3.1"; sha256="1msafxyx2xwgjw87yfbqqfn5ajfc6gla2nf41s6g4wjzg245n5zn"; depends=[dplyr e1071 fitdistrplus ggplot2 lubridate openxlsx PearsonDS plyr purrr RcppRoll scales tidyhydat tidyr zyp]; }; @@ -7695,9 +7954,9 @@ in with self; { fastHICA = derive2 { name="fastHICA"; version="1.0.2"; sha256="1h794ybbii0k7v3x0r1499zxdqa1i1dpi3i7idzqdrffnb5kmwlv"; depends=[energy fastICA]; }; fastICA = derive2 { name="fastICA"; version="1.2-2"; sha256="1zpijqcipm0aa3rxj0mys06lskqy4dbppjpxr1aby0j16y9ka8ij"; depends=[]; }; fastJT = derive2 { name="fastJT"; version="1.0.5"; sha256="1knk4zjrkkv1i3a8n68vdrpxkwdkf19zw75p93hygfmbbz6r88v4"; depends=[Rcpp]; }; - fastLink = derive2 { name="fastLink"; version="0.5.0"; sha256="1hgz4c26qlsdlp7gx0rsvkwn6xv86d7yk186sp7j6nfh2p9b1ccz"; depends=[adagio data_table doParallel dplyr FactoClass foreach gtools Matrix plotrix Rcpp RcppArmadillo RcppEigen stringdist stringi stringr]; }; + fastLink = derive2 { name="fastLink"; version="0.6.0"; sha256="0xysif0v7l7iwnwpf5ydk7ns9azsgja5sm672wxybfqwrh6nx9xk"; depends=[adagio data_table doParallel dplyr FactoClass foreach gtools Matrix plotrix Rcpp RcppArmadillo RcppEigen stringdist stringi stringr]; }; fastM = derive2 { name="fastM"; version="0.0-4"; sha256="1n9a431w0hl4kr3pa32kcyd1d73acz4vb9vhfkckk3099mg46d9m"; depends=[Rcpp RcppArmadillo]; }; - fastNaiveBayes = derive2 { name="fastNaiveBayes"; version="2.2.0"; sha256="11cxylh68wy8q6j979ba5awghmav57gnyzmssra4az6p4i4wvv9i"; depends=[Matrix]; }; + fastNaiveBayes = derive2 { name="fastNaiveBayes"; version="2.2.1"; sha256="04hv4jdhan1vbsixzbifa7hpmc531gv7c2dd1fx5700c2wlkja1n"; depends=[Matrix]; }; fastR2 = derive2 { name="fastR2"; version="1.2.1"; sha256="15mqsdy79zvd4srrszdjp0kh9lfcq3yxp7j5d4xcqbjbwsgy68il"; depends=[dplyr ggplot2 lattice maxLik miscTools mosaic numDeriv]; }; fastSOM = derive2 { name="fastSOM"; version="1.0.1"; sha256="1fzy7lfx1fn9993h0qh6vbwq0w4gfgbdrprmzb1z3aqq6nqvmngm"; depends=[]; }; fastStat = derive2 { name="fastStat"; version="1.3"; sha256="1f4554p487l7cig2xihfbgl55x7w04xbazd01pic0l8819mgmy5n"; depends=[car do e1071 ggplot2 ggrepel plyr reshape2 set survival tseries]; }; @@ -7711,31 +7970,33 @@ in with self; { fastdigest = derive2 { name="fastdigest"; version="0.6-3"; sha256="02csl261v7nassi5119ygw6jglm8q6rssg7lgyxzj73mkyilm832"; depends=[]; }; fasterElasticNet = derive2 { name="fasterElasticNet"; version="1.1.2"; sha256="1hr0wc6s6zpq1hkfgshf0dqjxb7s2849bb8lb04nmi6p42r3628g"; depends=[Rcpp RcppArmadillo]; }; fasteraster = derive2 { name="fasteraster"; version="1.1.1"; sha256="1ycr2h046jds2758xvxn00rhglx3zarbzn3r38j66j5pnz2iiq4f"; depends=[Rcpp]; }; - fasterize = derive2 { name="fasterize"; version="1.0.2"; sha256="1sffpjp4ycn495qfzragqq73zd5ykbhkbw89yj65nnifcyr1krhl"; depends=[raster Rcpp RcppArmadillo sp]; }; + fasterize = derive2 { name="fasterize"; version="1.0.3"; sha256="10bzl77c1b9jhcn1xp467qzp2n8c7s3wpxn53qjh1nwvbri5kd32"; depends=[raster Rcpp RcppArmadillo sp]; }; fastglm = derive2 { name="fastglm"; version="0.0.1"; sha256="1vqw02j4y28mngki87r42f1mhlkvajqp2gpbvk0l2adrkz70l0bn"; depends=[Rcpp RcppEigen]; }; - fastlogranktest = derive2 { name="fastlogranktest"; version="0.1.1"; sha256="0plvflhf5xcgw62hxp67ryy60sci69cbzm7klv786h2gz62v5qms"; depends=[BH Rcpp]; }; + fastlogranktest = derive2 { name="fastlogranktest"; version="0.2.1"; sha256="1j5mgvi3nwnlarj31cknx2cikypql370qds2h0877vmm80942z25"; depends=[BH Rcpp]; }; fastmaRching = derive2 { name="fastmaRching"; version="1.1.0"; sha256="085xr5i6h6vwl1flzbkwqsm8d815s0p02p0mir60jqjvy0s7haip"; depends=[raster rgdal sp]; }; fastmap = derive2 { name="fastmap"; version="1.0.1"; sha256="1v7sp56xiha0bh78g3w92k52p9vkp7ryzpw0z66nyddxzrfv0y27"; depends=[]; }; fastmatch = derive2 { name="fastmatch"; version="1.1-0"; sha256="0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90"; depends=[]; }; + fastmatrix = derive2 { name="fastmatrix"; version="0.2"; sha256="00az0mhzwh1wxx5r1ivx4irgx95nh9r5ll6lpwp16zg50l2fhd66"; depends=[]; }; fastmit = derive2 { name="fastmit"; version="0.1.1"; sha256="13hczsfbzssd272kpbq8l2l64lqrkmi2j6f3xyp9jvvxdd506kq0"; depends=[Rcpp RcppArmadillo]; }; fastnet = derive2 { name="fastnet"; version="0.1.6"; sha256="16jdwvk1xhl6bn9fx5s8pzvbizx6c0jmg6arqf201a7ghw2wi4xh"; depends=[doParallel foreach igraph tidygraph]; }; - fastpos = derive2 { name="fastpos"; version="0.3.0"; sha256="0w11pfbnh0px33i2myfdzi2xhskc61dan1yf2h8hvsr5x7y490lw"; depends=[MASS plyr Rcpp RcppArmadillo RcppProgress]; }; + fastpos = derive2 { name="fastpos"; version="0.4.0"; sha256="0j27xbjjz5d9892vgy3ph9xmfnn7gjgjdiy9zh2cl3hsq31w06fd"; depends=[future MASS plyr Rcpp RcppArmadillo RcppProgress]; }; fastpseudo = derive2 { name="fastpseudo"; version="0.1"; sha256="0paag4pjh3gs270j663bsl65sfrq43gk2zzqmalr03fmcckp6aaj"; depends=[]; }; fastqcr = derive2 { name="fastqcr"; version="0.1.2"; sha256="12x3lkg5zc4ckyg4x3xxqb779yhrr0fys7asf5b8shz49f86fmm9"; depends=[dplyr ggplot2 gridExtra magrittr readr rmarkdown rvest scales tibble tidyr xml2]; }; - fastrtext = derive2 { name="fastrtext"; version="0.3.4"; sha256="0k38290pz92ysw57298nng7bbghf5cicvin7l9q6l89pk3qa5wp0"; depends=[assertthat Rcpp]; }; + fastquant = derive2 { name="fastquant"; version="0.1.2"; sha256="0s6ylf3mjbd1w3mjmlw6fxmsj87yi339g439nf5alx87zm5f04v3"; depends=[assertthat dplyr httr lubridate magrittr purrr quantmod stringr tibble tidyr]; }; fastshap = derive2 { name="fastshap"; version="0.0.5"; sha256="08f25ib5mry6h8lvj0g3clc9kfl5g2wdd8x8bw455wwmbcm6x5vg"; depends=[abind ggplot2 gridExtra matrixStats plyr Rcpp RcppArmadillo tibble]; }; fasttime = derive2 { name="fasttime"; version="1.0-2"; sha256="11i4c0zrkvvqsax0az1fvmc0jxfsjyx28434k1qgzhj9g2j9m9cf"; depends=[]; }; fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.4"; sha256="01a9d6b2f6g858vg64kr0w0qmv2jqhk9kk3hb6jdr2rly4j8p14x"; depends=[kinship2 multgee]; }; - fauxnaif = derive2 { name="fauxnaif"; version="0.5.6"; sha256="1fgaj3rl2aqdf2x8z9lp8p5g7bfii98g4h2mmlhic4g135r7bznp"; depends=[glue magrittr rlang]; }; + fauxnaif = derive2 { name="fauxnaif"; version="0.6.0"; sha256="0c7fx3kyiqp63p64j0bssbw96h21cwg42qz4nab85wrmn1va7fs4"; depends=[dplyr glue lifecycle magrittr rlang]; }; fauxpas = derive2 { name="fauxpas"; version="0.5.0"; sha256="129fzqb7wsskbn50s8x0marr4wm8jrns6hiycqcsk166k3dnyyy8"; depends=[httpcode R6 whisker]; }; favnums = derive2 { name="favnums"; version="1.0.0"; sha256="0siax7gjr25lpf1li3hawx6nviggs68c0lap2d9i38azlhvj891w"; depends=[]; }; fbRads = derive2 { name="fbRads"; version="0.2"; sha256="1a65gfvizzm6psspcvlhkxligdf9j1whrgzkg7ww520lk3z8lnnd"; depends=[bit64 data_table digest futile_logger jsonlite plyr RCurl]; }; fbRanks = derive2 { name="fbRanks"; version="2.0"; sha256="17kbmdpgqkj2n951c6mdsrgfga6kiij1gqiw1wpi0q3fq4dlfrzx"; depends=[igraph stringr]; }; fbar = derive2 { name="fbar"; version="0.5.2"; sha256="0scfcr5k71fl0b0sibxchhcwpwk7ll68ks4nrpvsqgv5z48hlvsl"; depends=[assertthat dplyr magrittr Matrix purrr rlang ROI ROI_plugin_ecos stringr tibble tidyr]; }; - fbati = derive2 { name="fbati"; version="1.0-3"; sha256="03a48sndphxrm4bmk0qx0lxnk4akkdpbvldq9dcnf9hxxmrfivh4"; depends=[fgui pbatR rootSolve]; }; + fbati = derive2 { name="fbati"; version="1.0-4"; sha256="0vqn73zcqgg89zkfgf0ika0s87f4gb6nxds1dmliiq36p28dhv2c"; depends=[fgui pbatR rootSolve]; }; fbroc = derive2 { name="fbroc"; version="0.4.1"; sha256="1v73wl3yckcqx43fz1lzcsy6v08vmbmi7yi623yhgqywixxv2bx3"; depends=[ggplot2 Rcpp]; }; + fbst = derive2 { name="fbst"; version="1.0"; sha256="06bdsmmw5kbzrz5vgs6n572c8l9p62p7mi12gs4l1zncmh99qc1b"; depends=[bayestestR coda Matrix]; }; fc = derive2 { name="fc"; version="0.1.0"; sha256="0x41xfchy499kz0qi7fp12vpkbcddprv19mmk48lxzavv4f5avfh"; depends=[codetools]; }; - fcaR = derive2 { name="fcaR"; version="1.0.3"; sha256="0ljvn4sa3a2x1pskv2jil1c67rnd61dgi8cx1rq600mrsb2pdlhj"; depends=[arules hasseDiagram knitr Matrix RColorBrewer Rcpp scales stringr tictoc]; }; + fcaR = derive2 { name="fcaR"; version="1.0.4"; sha256="0kbhmbr4skr6xfhaamrk8v015ac8qf9i8a1ssjdjqrzq5s50pfch"; depends=[arules fractional hasseDiagram knitr Matrix RColorBrewer Rcpp scales stringr tictoc tikzDevice]; }; fcd = derive2 { name="fcd"; version="0.1"; sha256="091wbf5iskcgyr7jv58wrf590qijb0qcpninmvm3xrwxi34r37xr"; depends=[combinat glmnet MASS]; }; fclust = derive2 { name="fclust"; version="2.1.1"; sha256="11dsf7mb075m1m1ilqsacc0s4907wq6alvdfh6nizsyr01wiqw3b"; depends=[MASS Rcpp RcppArmadillo]; }; fcm = derive2 { name="fcm"; version="0.1.3"; sha256="1mqk6szczsixdvw0inkypij4cw2syng5l5ccw0xk55kc21l1lzn0"; depends=[ggplot2 reshape2]; }; @@ -7743,52 +8004,57 @@ in with self; { fcros = derive2 { name="fcros"; version="1.6.1"; sha256="04yr6lqs38lczsmdvdm78qn63836qj7xwspgh3h3n3gh8cssd83x"; depends=[]; }; fcuk = derive2 { name="fcuk"; version="0.1.21"; sha256="1sb7p1m5qb88028mrw95lhh8l7dxj696hjh88nfsdpnscryknfpv"; depends=[magrittr purrr stringdist tibble]; }; fdANOVA = derive2 { name="fdANOVA"; version="0.1.2"; sha256="1pycq5a4czqzi8wcfmlc9ncg827j7n0qxyj90wcv39nbcrnl3da1"; depends=[doBy doParallel fda foreach ggplot2 magic MASS]; }; - fda = derive2 { name="fda"; version="5.1.4"; sha256="0js4ggl3aiwsqk6npwz72yhcznkb63smddds24ngf6a0p8yp5p2x"; depends=[Matrix]; }; + fda = derive2 { name="fda"; version="5.1.5.1"; sha256="0zi001cw5536x6rgr4l0skva7fk53663zf6ggnsa8znml090sihm"; depends=[Matrix]; }; fda_usc = derive2 { name="fda.usc"; version="2.0.2"; sha256="0z44vkzjm2h6r5af0k1iic1szvw82rbwjrm541zlwn2jycj4q96a"; depends=[doParallel fda foreach iterators MASS mgcv nlme]; }; - fdaACF = derive2 { name="fdaACF"; version="0.1.0"; sha256="19cnjs05cdln1jg568ybj1qsb8s848l8fzcw1p5i8rh92gm2x4w4"; depends=[CompQuadForm pracma]; }; + fdaACF = derive2 { name="fdaACF"; version="0.2.0"; sha256="1kpvd2hkmszfrdwbcm1a586pv1kpy162263bcq371hv5mx450lhj"; depends=[CompQuadForm fda Matrix pracma vars]; }; fdaMixed = derive2 { name="fdaMixed"; version="0.6"; sha256="0hyhb67qvvhyq68k5h4ffvsl4lmw66nfy5l14kwxnn42h3b810sc"; depends=[Formula Rcpp RcppArmadillo]; }; + fdaPDE = derive2 { name="fdaPDE"; version="1.0-9"; sha256="06hm1f30rpy37xz9ybvhk759y10p8ijy7slnl9cvp4gqwzy2i8b7"; depends=[geometry Matrix plot3D plot3Drgl RcppEigen rgl]; }; fdadensity = derive2 { name="fdadensity"; version="0.1.2"; sha256="1i2xzchlsixgjzyfmbv547sy6mq90xrnyc2kpd11wwfgfrpj1ix3"; depends=[fdapace Rcpp]; }; fdakma = derive2 { name="fdakma"; version="1.2.1"; sha256="0j9qgblrl7v4586dd6v0hjicli6jh8pkk5lzn8afpl75xfs24six"; depends=[]; }; - fdapace = derive2 { name="fdapace"; version="0.5.2"; sha256="02kxd6604jnn0gg2bgpdalhhj390qyqk7zkzz2li5mgq8ym61n1p"; depends=[Hmisc MASS Matrix numDeriv pracma Rcpp RcppEigen]; }; + fdapace = derive2 { name="fdapace"; version="0.5.5"; sha256="1icc4wxglqr7qyyv2bh94j9jzcf8l03a701y69703rq9pzylq91s"; depends=[Hmisc MASS Matrix numDeriv pracma Rcpp RcppEigen]; }; fdasrvf = derive2 { name="fdasrvf"; version="1.9.3"; sha256="148rkidnflrdjmid9p2m08qz0li21mibyr0ahqzhry14dcw24g01"; depends=[coda doParallel fields foreach matrixcalc mvtnorm Rcpp RcppArmadillo testthat tolerance viridisLite]; }; fdatest = derive2 { name="fdatest"; version="2.1"; sha256="0zdnmssir5jz2kbfz4f4xshjfv4pivqx7cbh2arlx6ypkjrjws8n"; depends=[fda]; }; fdcov = derive2 { name="fdcov"; version="1.1.0"; sha256="0savsgcifcjjqrmbpn6m30gncq5iigqxpb19l710wlx8nm98svjh"; depends=[corrplot matlab]; }; + fddm = derive2 { name="fddm"; version="0.1-1"; sha256="12cm2ffjmsii1271k011yi2rn9qrjfqhqz1g75hywgr8vgl90g70"; depends=[Rcpp]; }; fdistr = derive2 { name="fdistr"; version="0.1.0"; sha256="1i9nq4jmszbmwk4m6jfn7rifsn7aay40cj6kz23b9ihj3phqffi8"; depends=[dplyr ggplot2 magrittr usethis]; }; fdm2id = derive2 { name="fdm2id"; version="0.9.3"; sha256="0ylr8843hdilzj2c38csxw98pvib9pgw25j7kbgw8531931xqls0"; depends=[arules car caret class cluster e1071 FactoMineR flexclust fpc glmnet ibr irr kohonen leaps MASS mclust mda meanShiftR nnet pls questionr randomForest ROCR rpart Rtsne SnowballC stopwords text2vec wordcloud xgboost]; }; fdq = derive2 { name="fdq"; version="0.11"; sha256="1lzv1pmzjixp8wpap0w3lad1ns9z2hjbxkfpyp9jy9mxprj1w3q9"; depends=[data_table Fgmutils ggplot2 plyr randomcoloR sqldf]; }; - fdrDiscreteNull = derive2 { name="fdrDiscreteNull"; version="1.3"; sha256="17nzqy4i1c5kcqyps52827q5apyjn4znb1ql4qvfm8v2m1fvily3"; depends=[MCMCpack qvalue]; }; + fdrDiscreteNull = derive2 { name="fdrDiscreteNull"; version="1.4"; sha256="1lwznpwfnhhv0h7qwy9jc7li752bq7hgmkh86qzyqz7k18zgx4iw"; depends=[MCMCpack qvalue]; }; fdrci = derive2 { name="fdrci"; version="2.1"; sha256="1sgrsmlz7sbr1maw3qnpzqz3z75fh5nyiibpsq8j0y12xac8d0x3"; depends=[]; }; fdrtool = derive2 { name="fdrtool"; version="1.2.15"; sha256="1h46frlk7d9f4qx0bg6p55nrm9wwwz2sv6d1nz7061wdfsm69yb5"; depends=[]; }; fds = derive2 { name="fds"; version="1.8"; sha256="1284vncixrzrz9x6b52gslrbrbia07sd0xac7nwdqhp5f5v5wfi0"; depends=[rainbow RCurl]; }; fdth = derive2 { name="fdth"; version="1.2-5"; sha256="01phrn8x245kplljjajqlsma7847j058spbxajnklamywf002qzr"; depends=[xtable]; }; - feasts = derive2 { name="feasts"; version="0.1.3"; sha256="16fzwgyhb99cxn6ynq3qxdzf0gyqjh9q7sa9ma5rr23cr460rsab"; depends=[dplyr fabletools ggplot2 lubridate rlang scales slider tibble tidyr tsibble vctrs]; }; + feasts = derive2 { name="feasts"; version="0.1.4"; sha256="11ldjnqikwnrlj279hm27fidmkjvf8z1rr0kypjd7vl6h5g5c0gx"; depends=[dplyr fabletools ggplot2 lubridate rlang scales slider tibble tidyr tsibble vctrs]; }; feather = derive2 { name="feather"; version="0.3.5"; sha256="1gxd0h2m56sjjlzn4dry6s13nddxc4l5i11gsvavaf2dwbahdzsh"; depends=[hms Rcpp tibble]; }; feature = derive2 { name="feature"; version="1.2.13"; sha256="07hkw0bv38naj2hdsx4xxrm2dngi6w3rbvgr7s50bjic8hlgy1ra"; depends=[ks misc3d rgl]; }; + featureCorMatrix = derive2 { name="featureCorMatrix"; version="0.4.0"; sha256="1gq3g351z3fbrx6ys28iymv9j07p2siav8jr3k07r06w314dk1q6"; depends=[]; }; featurefinder = derive2 { name="featurefinder"; version="1.1"; sha256="024g3adhxx1ynl9wnc2yl3illj4347ak6wkfmvqxfwd6llsa79ld"; depends=[plyr rpart rpart_plot]; }; features = derive2 { name="features"; version="2015.12-1"; sha256="0rd8r1dxzddb6718hcm8ck7531c9wdrjfy8n67875bbxgzcvds61"; depends=[lokern]; }; - featuretoolsR = derive2 { name="featuretoolsR"; version="0.4.3"; sha256="1qgk9z8ld9yyw37r3birbds4a7jffq3qqkvlnldvz3yk81ir7kw7"; depends=[caret cli dplyr magrittr purrr reticulate stringr testthat tibble]; }; + featuretoolsR = derive2 { name="featuretoolsR"; version="0.4.4"; sha256="0zrb3hb9axcfqc1b5cyhasm3p6jvgh7hd3085w7zag66pizqjwws"; depends=[caret cli dplyr magrittr purrr reticulate rstudioapi stringr testthat tibble]; }; featurizer = derive2 { name="featurizer"; version="0.2"; sha256="05jvwsvpbdj94q3wl7ld6xmfc9p7ff9zsmryd3mmxz0hzbq2cnkc"; depends=[]; }; febr = derive2 { name="febr"; version="1.1.0"; sha256="12580kbssixrgpr147vw52h88i0wvvpj44pp1n0ivxzmmzbvpqrv"; depends=[dplyr glue pedometrics sf stringr]; }; + fec16 = derive2 { name="fec16"; version="0.1.0"; sha256="0jmyf35ypniicpam3yihgpsnp4bbhrw0mdgbkkchcbvm9ncngrn4"; depends=[dplyr readr]; }; fechner = derive2 { name="fechner"; version="1.0-3"; sha256="0bassigcipwlr2g8cdjh8jyhmb903k3hla9gnigcbz7qwzlfwa86"; depends=[]; }; federalregister = derive2 { name="federalregister"; version="0.2.0"; sha256="0qr8nd3ylnwcv1wxspw5i7ray5sh30zr648spg0lpqq8dp2b8p7b"; depends=[curl httr jsonlite]; }; fedregs = derive2 { name="fedregs"; version="1.0.0"; sha256="171j6r6qxnx9gk9x9gpdyh51ssrgmf7sczc4889qr3qqw15sm4bn"; depends=[dplyr httr magrittr purrr rvest stringi tidyr tidytext xml2]; }; fedreporter = derive2 { name="fedreporter"; version="0.2.1"; sha256="18hs358iyxmbh28jy9f65zvanpr6bk4gq75qbj255y1zzdsjr9x1"; depends=[httr jsonlite]; }; feedeR = derive2 { name="feedeR"; version="0.0.8"; sha256="15fl3xb7mp7as2hl97l2vvl2k8cp48dnzy17jgrw5g1hg4yk1wgh"; depends=[digest dplyr lubridate readr stringr tibble xml2]; }; - feisr = derive2 { name="feisr"; version="1.0.1"; sha256="0pwaj509qz6z4rz54b10xmv2476qygmrm4bpc3szah6pf2pf0zmm"; depends=[aod Formula plm Rdpack]; }; + feisr = derive2 { name="feisr"; version="1.1.1"; sha256="0kbmivia8mfn3l3g45aliz2hid28gx7mka06m2kb6kpkf77kjrbd"; depends=[aod dplyr Formula plm Rdpack]; }; fellov = derive2 { name="fellov"; version="0.1"; sha256="0z4b08ykajzwa5852dknqz5qqlmhklbwdq8x5zhyfmwba5zfbjav"; depends=[]; }; felp = derive2 { name="felp"; version="0.2.2"; sha256="1kd2619cj8697l1zpigz78vshc5gd8yvrg7zmw3mik7pjafz1k32"; depends=[prettycode]; }; fence = derive2 { name="fence"; version="1.0"; sha256="18l3fliww60d9n9hbfdny5vr9mi78krwpjj5sypdsb77d6332h9q"; depends=[fields ggplot2 lme4 MASS sae snow snowfall]; }; fergm = derive2 { name="fergm"; version="1.1.4"; sha256="1d979z2m5f13i1w9d8kh9rnaafavsap169w0nycpd5j2f3dfhyn7"; depends=[ergm extrafont ggplot2 matrixStats network reshape2 rstan]; }; fermicatsR = derive2 { name="fermicatsR"; version="1.4"; sha256="1587f67fypj22rdi1319zq765lcc9z518bzl1jr4lz6c8lrzfm9i"; depends=[]; }; - ff = derive2 { name="ff"; version="2.2-14.2"; sha256="1r1pbrf5s4rdm3msxxr8fy1f2xjihqciclsnvxf59qzz6g1nmh7q"; depends=[bit]; }; + ff = derive2 { name="ff"; version="4.0.2"; sha256="1qbfmhk4v76q145yalqaiaffklvkfs615b5m0imxyjyjcvx1nbn0"; depends=[bit]; }; ffbase = derive2 { name="ffbase"; version="0.12.8"; sha256="0mjk7dkq1ginqqfvngzny747ggf9a8fd7kblq96n5ys1jrwjyqhq"; depends=[bit fastmatch ff]; }; ffmanova = derive2 { name="ffmanova"; version="1.1.0"; sha256="0019m9vxnh5yxr5k7zflzyhd533a842cjjkcpqyannshnrbfndvy"; depends=[]; }; ffmetadata = derive2 { name="ffmetadata"; version="1.0.0"; sha256="0gjv5fl3p0kz28c91l4qf34a2685a24l5841ixdg7wivfs5v9npv"; depends=[httr jsonlite]; }; + ffscrapr = derive2 { name="ffscrapr"; version="1.0.0"; sha256="0nn07dpvcy5p5kyhjmy1jiypbjn5x6dfimkp0lxqpwvm4arvskkx"; depends=[dplyr glue httr jsonlite lubridate magrittr memoise purrr ratelimitr rlang stringr tibble tidyr]; }; ffstream = derive2 { name="ffstream"; version="0.1.6"; sha256="036ikhah4y85khgfmvxwsn3vavvw1is8i9k2lw474wxlh4cxa3kd"; depends=[Rcpp]; }; fftw = derive2 { name="fftw"; version="1.0-6"; sha256="1kkhn79x3akp2v28aqmif0dd2fn1pw145fjgyy29i4ab6pngazir"; depends=[]; }; fftwtools = derive2 { name="fftwtools"; version="0.9-8"; sha256="1nqvpzda281rxi1cmwajxxsn3sc3gz7scv8bvs5jm34kf36whha6"; depends=[]; }; fgac = derive2 { name="fgac"; version="0.6-1"; sha256="0paddf5a4w0g2i0ay7my0bppwh534d8ghy6csfxl5jj034xjgwkk"; depends=[]; }; - fgdr = derive2 { name="fgdr"; version="1.0.0"; sha256="0wf0ayn2vx2pkid08ssr7ygq9k9qxsw86wwppm2r9b7i8cw7kbf8"; depends=[jpmesh magrittr purrr raster readr rlang sf sp stars stringr tibble xml2]; }; + fgdr = derive2 { name="fgdr"; version="1.0.1"; sha256="1413aghmyzlpm6zz974ynfinvj3ic4zx6b262n78n51flgrvym3p"; depends=[jpmesh magrittr purrr raster readr rlang sf sp stars stringr tibble xml2]; }; fgeo = derive2 { name="fgeo"; version="1.1.4"; sha256="0axglmk05li3plb79rccskhddjzq3pdx3mgxr8yqysymf1nscrq6"; depends=[cli crayon dplyr fgeo_analyze fgeo_plot fgeo_tool fgeo_x glue magrittr purrr rlang rstudioapi]; }; fgeo_analyze = derive2 { name="fgeo.analyze"; version="1.1.13"; sha256="1cj4bazggpic0i5sq9iqq0y0j2xvp01i9ccv0pchg82xlgis33gw"; depends=[dplyr fgeo_tool glue lubridate magrittr MASS purrr rlang tibble tidyr withr]; }; fgeo_plot = derive2 { name="fgeo.plot"; version="1.1.9"; sha256="18zw4bsqdqdpy103kdyl40162mii6s1lp2w4cpi50svx7g7xhgh5"; depends=[dplyr fgeo_tool ggplot2 ggrepel glue magrittr purrr rlang stringr]; }; @@ -7799,8 +8065,10 @@ in with self; { fgpt = derive2 { name="fgpt"; version="2.3"; sha256="1d0qzsn4b68jhk07k97iv765jpmzzh1gwqpid0r76vg4cwqfs3n7"; depends=[]; }; fgui = derive2 { name="fgui"; version="1.0-8"; sha256="024fzd1c7iwqprn26hwjb9l2qlvvyzl449d7iixy0x69djwsrysv"; depends=[]; }; fhidata = derive2 { name="fhidata"; version="2019.8.27"; sha256="0cm8ixpr3gjzprjcv43zdnysw8qhv72pf3fd2vckql01mlk16p42"; depends=[data_table]; }; + fhircrackr = derive2 { name="fhircrackr"; version="0.1.1"; sha256="14jbyx3hr4bgyyny51b222afsirskfpc6vbdpnrpaqvz82ifbv3c"; depends=[dplyr httr stringr xml2]; }; fiberLD = derive2 { name="fiberLD"; version="0.1-6"; sha256="1i3bl2qsc77m81l11an9ihl4vy86s8jd5x6pasib77rl2877ad4x"; depends=[doParallel foreach Matrix VGAM]; }; fic = derive2 { name="fic"; version="1.0.0"; sha256="18xz94w1ab17jfi61bdg9z3pm63g488v17ns2ivizkza4gg07pv8"; depends=[abind ggplot2 mvtnorm numDeriv scales survival tensor]; }; + fieldRS = derive2 { name="fieldRS"; version="0.2.3"; sha256="0jr2l5cnrawd6wibmb6r0sngd851z9mbz4mwprnbbqbv3hzzrpm9"; depends=[caret concaveman geosphere ggplot2 raster rgeos sp stringdist vegan]; }; fields = derive2 { name="fields"; version="10.3"; sha256="12k97vfjlz5h8vynirnvik1nyj1iw25n8xl7awmx9mpd6wvgy2s9"; depends=[maps spam]; }; fiery = derive2 { name="fiery"; version="1.1.2"; sha256="01ahdvcag8ifpp6jl6cgjjrchwxbr9fzvzqysj77kg3n5dcqm6cl"; depends=[assertthat crayon future glue httpuv later R6 reqres stringi uuid]; }; filehash = derive2 { name="filehash"; version="2.4-2"; sha256="14zv7h5195dmfksgk8qvjgc2qq8253vga6267aa1bqs5bpvmdl5n"; depends=[]; }; @@ -7810,34 +8078,36 @@ in with self; { filenamer = derive2 { name="filenamer"; version="0.2.3"; sha256="19gavhh5q7dziv0yc000w06qp58wk2cm52cxjl33p1q4cjk6gg3m"; depends=[]; }; files = derive2 { name="files"; version="0.0.1"; sha256="1vhhawqjjbb6fadkn3l10mvz63w3vmcwvl93fk0q9mhkifzlj9kc"; depends=[]; }; filesstrings = derive2 { name="filesstrings"; version="3.1.5"; sha256="072alawp6j08mwlw1pz50g3lfi726kpsc744x5fvy71d7w4gqn6l"; depends=[checkmate magrittr matrixStats ore rlang strex stringi stringr tibble withr]; }; - filling = derive2 { name="filling"; version="0.2.1"; sha256="17bhfzvzdyri8yx7b40yhdx3x2gb2vy2i8sz2cyjyw9idnd8svmr"; depends=[CVXR nabor Rcpp RcppArmadillo Rdpack ROptSpace RSpectra]; }; + filling = derive2 { name="filling"; version="0.2.2"; sha256="02s2q8wsnxrl3914516r6z0vksbsfmcv7y8hqjl92h4cqqr7023w"; depends=[CVXR nabor Rcpp RcppArmadillo Rdpack ROptSpace RSpectra]; }; fillr = derive2 { name="fillr"; version="1.0.0"; sha256="1gx1ihp8j90ywmm6mmmfq4jd6apxawk9s5dfw3jq0wm1c290zqpv"; depends=[]; }; - finalfit = derive2 { name="finalfit"; version="1.0.1"; sha256="0ndnsllz8p96jj6in4ffqpfdawp45rh1fn2ralcrgdldhs6lg1xq"; depends=[boot broom dplyr forcats GGally ggplot2 gridExtra lme4 magrittr mice pillar pROC purrr scales stringr survival tidyr]; }; + finalfit = derive2 { name="finalfit"; version="1.0.2"; sha256="118ja2san73341m4vn9xmsazak4w6z6290rai4fl1jwf9amk2jnq"; depends=[bdsmatrix boot broom dplyr forcats GGally ggplot2 gridExtra lme4 magrittr mice pillar pROC purrr scales stringr survival tidyr]; }; finbif = derive2 { name="finbif"; version="0.3.0"; sha256="0f5mkwinnfqhv0kgywbzi1lhfdhnh5mhhh8kj5pyxfwncbg109z4"; depends=[digest httr jsonlite lubridate lutz]; }; - finch = derive2 { name="finch"; version="0.3.0"; sha256="1cglyq3b0cvl05yrnpy6xn0nj0n817hgpcsxp3m07cvj8xidib02"; depends=[data_table digest EML hoardr plyr rappdirs xml2]; }; + finch = derive2 { name="finch"; version="0.4.0"; sha256="0q7riaxms460c6z2gb8i0q4pb348bnvry46bjd7pb9mh8fnl1i8b"; depends=[data_table digest EML hoardr xml2]; }; findR = derive2 { name="findR"; version="0.2.1"; sha256="1a7cf6kd7i2l4ffr2b17nb9xnpsjhf6fcwpjy06r0qgcapnfp54b"; depends=[pdftools stringr]; }; findpython = derive2 { name="findpython"; version="1.0.5"; sha256="0icifm4z6hhpmcjrg75a875iph0ci890ss02kdv3725pijc236iy"; depends=[]; }; findviews = derive2 { name="findviews"; version="0.1.3"; sha256="1l1yhw5hvrn0rpkdsch8m69d2q5284jwccvv7r4ia4m0iqjfipj7"; depends=[ggplot2 gridExtra scales shiny]; }; fingerPro = derive2 { name="fingerPro"; version="1.1"; sha256="1a1lj8gyrbgcg8hr03cj2bjzlaafddspri7abc83ys1raqwd4j68"; depends=[car GGally ggplot2 gridExtra klaR MASS plyr Rcmdr Rcpp RcppGSL RcppProgress reshape rgl scales]; }; fingerprint = derive2 { name="fingerprint"; version="3.5.7"; sha256="04jcwkydjrs31pia6kq8z2n9s54im950q08hs2ay15xjxxkmb8ic"; depends=[]; }; - fingertipsR = derive2 { name="fingertipsR"; version="1.0.3"; sha256="0r67d47w4qvxh7n70600z0i1s9ykpp0jshay69clgbmavl0vg7hv"; depends=[curl dplyr DT httr jsonlite miniUI readr rlang shiny shinycssloaders]; }; - fingertipscharts = derive2 { name="fingertipscharts"; version="0.0.10"; sha256="1l3mirspz28djlzma04lkkynfbz8qfq0asr662q102j31qx6vnm4"; depends=[curl dplyr geojsonio ggplot2 httr leaflet lemon mapproj purrr rlang scales sf stringr tibble tidyr]; }; + fingertipsR = derive2 { name="fingertipsR"; version="1.0.4"; sha256="1li5l273nw5v9gld4g5i4xsfv2rndsnfrg9cw01q20k3kba4jngj"; depends=[curl dplyr DT httr jsonlite miniUI readr rlang shiny shinycssloaders]; }; + fingertipscharts = derive2 { name="fingertipscharts"; version="0.0.11"; sha256="1xni93m9d3r08crgbk1g660g6mr9d01cjvqcca5mpm8n2cbhq634"; depends=[dplyr geojsonio ggplot2 httr leaflet purrr rlang scales sf stringr tibble tidyr]; }; finiteruinprob = derive2 { name="finiteruinprob"; version="0.6"; sha256="0z4l0crymh58chxniqq70fqmvi6f5jkgvz72vbc7s3l9lrrapgr3"; depends=[numDeriv sdprisk]; }; finity = derive2 { name="finity"; version="0.1.4.1"; sha256="0xs3vx0vj165hj4dq8ivrdf6fcvj23zhp2ai79rgpyb5rr5ndkvc"; depends=[BH Rcpp RcppArmadillo stabledist]; }; - finreportr = derive2 { name="finreportr"; version="1.0.1"; sha256="1mansiyl4p4zqc1h2aw9zgzb3fy4mppgmshdm8mcf4nbm340g4vk"; depends=[curl dplyr httr rvest XBRL xml2]; }; + finreportr = derive2 { name="finreportr"; version="1.0.2"; sha256="0xkkrgmwkasxgaf3lvvxl5azwbphk83fpa2asgva86qml7vwznlc"; depends=[curl dplyr httr rvest XBRL xml2]; }; fipe = derive2 { name="fipe"; version="0.0.1"; sha256="055jav8h4wws76jahm2d5dj49wkvzchh3f2vk5d50pny4dc7smar"; depends=[dplyr forcats furrr future httr jsonlite lubridate magrittr purrr readr stringr tibble tidyr]; }; firebase = derive2 { name="firebase"; version="0.1.0"; sha256="154a386ga9bjgam9rxp0y9033hx55p7f3294z52r6dz2y87h3lz2"; depends=[cli R6 shiny]; }; firebehavioR = derive2 { name="firebehavioR"; version="0.1.2"; sha256="10krny60dkpgwjjnriap91qmrnfq1rl5ck4ynf4h6x016bv0m374"; depends=[ggplot2]; }; fishMod = derive2 { name="fishMod"; version="0.29"; sha256="0pbs4z27vwa3c42xdw3mr6l2i581bgvn2pk52kawbcnnlsff92ar"; depends=[]; }; + fishbc = derive2 { name="fishbc"; version="0.0.1"; sha256="041yq17s9my4fn15mn01bjjp6n1sxkdg1jzdnf5y68vc7ysynmwx"; depends=[]; }; fishdata = derive2 { name="fishdata"; version="0.1.3"; sha256="04162m1j570cdwhffkwjs1x1qlsc20djj1jwx2hl2cqmbp584ppq"; depends=[]; }; fisheyeR = derive2 { name="fisheyeR"; version="0.9"; sha256="1w6va7gakqq2q8hsvdszpn8s2ysdfc648bk5p5v3wbl5s403bci8"; depends=[tkrplot]; }; + fishflux = derive2 { name="fishflux"; version="0.0.1.1"; sha256="06f0w0g2kmqwjhaj631a242qp2c0m4xiv5xxfbv4wbjl7ffh4qn3"; depends=[BH dplyr fishualize ggplot2 plyr Rcpp RcppEigen RcppParallel rfishbase rstan rstantools StanHeaders tidybayes tidyr]; }; fishkirkko2015 = derive2 { name="fishkirkko2015"; version="1.0.0"; sha256="1s8vsf604rc6qk0gahn61p3q8p9dhsbq14wsmrin7icq2xgl3y81"; depends=[]; }; fishmethods = derive2 { name="fishmethods"; version="1.11-1"; sha256="049a25rwxqy6a8jfm0irjka3bl7vkask32f9h7fsr5ddlyzvg5pz"; depends=[boot bootstrap data_table lme4 MASS numDeriv]; }; fishmove = derive2 { name="fishmove"; version="0.3-3"; sha256="1knbv087cg0czjcgdbrlpg69pp1dxb57b7ak5j1mcy7ay3a41a9h"; depends=[boot ggplot2 MASS plyr]; }; fishtree = derive2 { name="fishtree"; version="0.3.2"; sha256="19kq38l4cm7g2frvf2zdlk1j636k2f5k0bf6v7wn2zcmivy0xzsw"; depends=[ape jsonlite memoise rlang]; }; fishualize = derive2 { name="fishualize"; version="0.2.0"; sha256="13z6n62fpans1fxjxlpz2xqqpq0ng5via67vk4nkvp0nxmlrlhky"; depends=[downloader dplyr ggplot2 gridExtra httr magrittr png rlang scales stringr tidyr]; }; - fit_models = derive2 { name="fit.models"; version="0.5-14"; sha256="0vjbzmx0ambm6yzidb4vbgmhclwzwv2iz2cwl54ccdkvx4cx3fck"; depends=[lattice]; }; - fit4NM = derive2 { name="fit4NM"; version="3.3.3"; sha256="0k2194521yby6xxi77bpjp6ywz8kpnzws217m7n0hw6xwz5mqj1g"; depends=[cairoDevice gWidgets gWidgetsRGtk2 RGtk2 tkrplot]; }; + fit_models = derive2 { name="fit.models"; version="0.64"; sha256="1nk4x2q8cv79zcls61saf627ac0fci6jcrd6lmzk61asm2zhc27p"; depends=[lattice]; }; + fitConic = derive2 { name="fitConic"; version="1.1"; sha256="0xlyv60r4fqvg3qhy4s9zkm2w65y4pg5nzl7a3k2z3fdpfcvkinz"; depends=[pracma]; }; fitDRC = derive2 { name="fitDRC"; version="1.1.1"; sha256="09z9l27iwl0fd3zy6rsdhmy8qbm5d9a4wcaj5rxp7ynlnpi102aa"; depends=[]; }; fitHeavyTail = derive2 { name="fitHeavyTail"; version="0.1.2"; sha256="17jdqxrycqkpmb9pzfqrwcax12j6dx7w122989qrpwqsx48ax133"; depends=[ICSNP mvtnorm]; }; fitODBOD = derive2 { name="fitODBOD"; version="1.4.1-1"; sha256="0sx7la3bcii8fh8ril5ibbr4x97zgqwl7h889gnk6j733pcmgx0p"; depends=[bbmle hypergeo]; }; @@ -7845,47 +8115,51 @@ in with self; { fitTetra = derive2 { name="fitTetra"; version="1.0"; sha256="0ia6wk4gicpmn6kclsd28p7v1npwfv2blagiz0cxzwfw3njv103g"; depends=[]; }; fitbitScraper = derive2 { name="fitbitScraper"; version="0.1.8"; sha256="0b4d7xw6inp6l1dkfwyrzxwg4vspp4vzlwrhv14ajxrqz6irj8a0"; depends=[httr jsonlite stringr]; }; fitdc = derive2 { name="fitdc"; version="0.0.1"; sha256="1b1abib7jkl7a6r686r53qjw2ywb9q2h67is8691kkaqxpawg30p"; depends=[]; }; - fitdistrplus = derive2 { name="fitdistrplus"; version="1.0-14"; sha256="10q08wsv8v3w7797jdvvv60bgrf1bi6438wf0jcqv81ays82a245"; depends=[MASS npsurv survival]; }; + fitdistrplus = derive2 { name="fitdistrplus"; version="1.1-1"; sha256="1rnfnwmxa495fql7q0h9018cnwygwhj8gfh6ryz1vbf474570vjl"; depends=[MASS survival]; }; fitplc = derive2 { name="fitplc"; version="1.2-3"; sha256="1yg3ch907c4gk7q8hxgwqxgngkmy125j3ni917nkzi7hn59krd1n"; depends=[car nlme]; }; fitteR = derive2 { name="fitteR"; version="0.1.0"; sha256="1kgnyl7am966vkfap8gmvchlpankrcj5dv5aj7ws8ix9shr76db6"; depends=[dplyr DT maxLik R_utils shiny]; }; fitur = derive2 { name="fitur"; version="0.6.1"; sha256="04lr717lsbb4731nlzgscraj30knik4q68jzrl4i5f27912159r9"; depends=[actuar DT e1071 fitdistrplus ggplot2 goftest miniUI rstudioapi shiny]; }; - fitzRoy = derive2 { name="fitzRoy"; version="0.3.1"; sha256="0f39mn36mv7s0lidz93a7ri13sbr1lxnc6m7pgrkwk11yd61kf9g"; depends=[dplyr glue httr jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; - fivethirtyeight = derive2 { name="fivethirtyeight"; version="0.5.0"; sha256="00cc7kjs54wk2cxbkd14gldsrjmf4i35vwr6c2kfsassvjjhbmpm"; depends=[]; }; + fitzRoy = derive2 { name="fitzRoy"; version="0.3.2"; sha256="0kzgp9mjkm26bk2gvw3y5ynbgr3f2jwhj4kmjb7nw9sys7826azl"; depends=[dplyr glue httr jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; + fivethirtyeight = derive2 { name="fivethirtyeight"; version="0.6.1"; sha256="1c59jaj2jz498mw2by6yss3nqmhxwn25j9ah89x2540pq4r1zifx"; depends=[]; }; fixedTimeEvents = derive2 { name="fixedTimeEvents"; version="1.0"; sha256="0z7ji8yzp4pj76ad64l7ivknkbi82ijx6abd3a18wicqhrh433sj"; depends=[]; }; fixerapi = derive2 { name="fixerapi"; version="0.1.6"; sha256="0ikf8dn0l9c9gshp4bph3wasl0bh6lfybinc8n1rvb202231hmgb"; depends=[jsonlite tibble tidyr]; }; - fixest = derive2 { name="fixest"; version="0.4.1"; sha256="1jdx6mhi2hibd8zbpbba324z6f76irhkvwaanw2840qq8pql5rjf"; depends=[Formula MASS nlme numDeriv Rcpp]; }; + fixest = derive2 { name="fixest"; version="0.6.0"; sha256="1g1xcg51sjrq6i8q5il4njg3238g5ky7k4yav3rk25fyx9xxqrf2"; depends=[dreamerr Formula nlme numDeriv Rcpp sandwich]; }; fizzbuzzR = derive2 { name="fizzbuzzR"; version="0.1.1"; sha256="119gbi9y4n8r52hk9vj7zf795dv9xnk7lnngljjcd7ydnhygwd4h"; depends=[]; }; flacco = derive2 { name="flacco"; version="1.8"; sha256="15h2q9xgddy7gw6r52c2nk618f3z1mjn4xz9pzdvhm1d3kqggwa4"; depends=[BBmisc checkmate mlr]; }; flagr = derive2 { name="flagr"; version="0.3.2"; sha256="195c78cml2pjzfvpkaxbzcg1dfdqxi76138p0v3x3zzva9d8nlji"; depends=[]; }; flair = derive2 { name="flair"; version="0.0.2"; sha256="0hvg9k7l6vdhmbmql1viyn54f07r31ssyyhdv2v242i0npa2l25r"; depends=[dplyr evaluate ggplot2 glue knitr magrittr purrr rmarkdown stringr]; }; flam = derive2 { name="flam"; version="3.2"; sha256="0v6kcl4n7wq052p7jdgbzlh9fpk8bzlrqw12i6pib1wd3slj0asa"; depends=[MASS Rcpp]; }; flamingos = derive2 { name="flamingos"; version="0.1.0"; sha256="0gic6y8wpxffpyi3zy0wh7apy4z6argxbz284n80k2mzh6lh029k"; depends=[Rcpp RcppArmadillo]; }; - flare = derive2 { name="flare"; version="1.6.0.2"; sha256="1ybrsx1djqldw0l5l1iz4pfh6xxb8ckkg1ric7wnsr51wm9ljlh5"; depends=[igraph lattice MASS Matrix]; }; + flan = derive2 { name="flan"; version="0.8"; sha256="0v7xjx72zaa5g9xn82x694r9k35vc1n36dv5nbnxz46px0pczsd6"; depends=[Rcpp RcppArmadillo RcppGSL]; }; flars = derive2 { name="flars"; version="1.0"; sha256="06qma1ar1nj7n6g9alk1qydm5bkj6lsjx0pqkikxpb41d91civqk"; depends=[fda MASS Matrix Rcpp RcppEigen]; }; + flashCard = derive2 { name="flashCard"; version="0.1.0"; sha256="1l1g3hy0gchsmdj04d065rl71hkvxydyqsmav5qwxyz2mdkknkhi"; depends=[htmlwidgets jsonlite]; }; flashClust = derive2 { name="flashClust"; version="1.01-2"; sha256="0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"; depends=[]; }; - flashlight = derive2 { name="flashlight"; version="0.7.2"; sha256="1d0mps51sxg9hc8fr4462m2jwr0hv7f8qk6sxlh3d3x3ci9zk6xq"; depends=[dplyr ggplot2 ggpubr MetricsWeighted rlang rpart rpart_plot tidyr]; }; + flashlight = derive2 { name="flashlight"; version="0.7.3"; sha256="0mkza0q5w87ayp6yhkb53xw4vfbbbryzsl4bs0s063390qwhn7sp"; depends=[dplyr ggplot2 ggpubr MetricsWeighted rpart rpart_plot tidyr tidyselect]; }; flatr = derive2 { name="flatr"; version="0.1.1"; sha256="10l98a3f57wahfpdqxj70r25zfhk4vzzd014pdnriy458yrfd7rw"; depends=[dplyr magrittr tibble]; }; - flatxml = derive2 { name="flatxml"; version="0.0.2"; sha256="1f7pc3chzimkg23490qvppy63sk4ds3aaahc36sa4dc4qmhabyms"; depends=[RCurl xml2]; }; + flattabler = derive2 { name="flattabler"; version="1.1.0"; sha256="007pk1qjd4qf70008jlfvvvlczgyhwncglyzs5mw7j5kxca4hnis"; depends=[dplyr stringr tibble tidyr xlsx]; }; + flatxml = derive2 { name="flatxml"; version="0.1.0"; sha256="0nc44g6ghk8wh2cdlszkj52js2glakmd20dnisp8wsb6immix9gg"; depends=[httr RCurl xml2]; }; flexCWM = derive2 { name="flexCWM"; version="1.92"; sha256="1fxwq12mki10ikf5lyh1pb58svfzs4llg68v4d9iznia8aa0grhq"; depends=[ContaminatedMixt mclust numDeriv statmod]; }; flexclust = derive2 { name="flexclust"; version="1.4-0"; sha256="0x7wxk8y46ndyz6fdacym0rd6p9wh3pcfr28chjcg5d7fm849zl2"; depends=[class lattice modeltools]; }; - flexdashboard = derive2 { name="flexdashboard"; version="0.5.1.1"; sha256="0fy3nbrr67zqgd44r2mc850s5sp0hzfcw3zqs15m8kxzj1aw067x"; depends=[htmltools htmlwidgets jsonlite knitr rmarkdown shiny]; }; + flexdashboard = derive2 { name="flexdashboard"; version="0.5.2"; sha256="1bh759llp15fxrx2rwvxd8p3w84vjmkid32ism7zg49a127fjib4"; depends=[htmltools htmlwidgets jsonlite knitr rmarkdown shiny]; }; flexmet = derive2 { name="flexmet"; version="1.0.0.0"; sha256="0xhr4i46s3k7a4yz2sd1sphn8wz27xcl580s2kqkr1ifg8941kv8"; depends=[]; }; flexmix = derive2 { name="flexmix"; version="2.3-15"; sha256="0hrz2axp2c9548b1r0bmrl57219nn030qndb83a8garkzq5lqi5s"; depends=[lattice modeltools nnet]; }; flexmixNL = derive2 { name="flexmixNL"; version="0.0.1"; sha256="0bk5v0cnsn1qkd1b86vj0bnpr4l9d6523kpkgzb1l1sqyscawfmm"; depends=[flexmix gnm]; }; + flexpolyline = derive2 { name="flexpolyline"; version="0.1.1"; sha256="1yi9h8zdi2hmk1zn06sl4krzxfnr0vbpz3xphh1n3l5smd88n1vb"; depends=[Rcpp sf]; }; flexrsurv = derive2 { name="flexrsurv"; version="1.4.5"; sha256="1xwh6fj854hr5j1mdh4cbp3hbrbdl4nb2ili876rq08wb9wq5pkf"; depends=[Epi formula_tools matrixcalc orthogonalsplinebasis statmod survival]; }; flexsurv = derive2 { name="flexsurv"; version="1.1.1"; sha256="0x7p1rv51pplfyyzcg63ssb8z56mig7y0363hkr0219w3cvyq9nr"; depends=[deSolve mstate muhaz mvtnorm quadprog Rcpp survival tibble tidyr]; }; flexsurvcure = derive2 { name="flexsurvcure"; version="1.1.0"; sha256="0q77cc2l4xa7jkmx5sl9qwsxsdaf688ckp7j6pprv0nkzv8js16r"; depends=[flexsurv gtools survival]; }; - flextable = derive2 { name="flextable"; version="0.5.9"; sha256="1rkz0nhwjy1l8sb0kmna5v492n2ydnk7gydswnmf88r8vfyjczhw"; depends=[base64enc data_table gdtools htmltools knitr officer rlang rmarkdown xml2]; }; + flextable = derive2 { name="flextable"; version="0.5.10"; sha256="1j7yvjiavar21ywck6nyz0p6bd66fnj99bq8lljdz4rrl3314yb8"; depends=[base64enc data_table gdtools htmltools knitr officer rlang rmarkdown uuid xml2]; }; flifo = derive2 { name="flifo"; version="0.1.5"; sha256="03x66l3ryrjvwbxxd0ncjrb5w9kc7fswmp5psb1cb7r87f395gm3"; depends=[bazar pryr]; }; flightplanning = derive2 { name="flightplanning"; version="0.8.0"; sha256="0q5xdjgjj9j73djpvzc34ig2gk43xan5jg9pn195m1x8lz41yvk9"; depends=[rgdal rgeos sp]; }; + flightplot = derive2 { name="flightplot"; version="0.1.0"; sha256="1276lsahr9kdsvp1ismm3b5syvhfr7ifizzd79f8w1h2rjblva8x"; depends=[dplyr geosphere ggplot2 ggrepel magrittr rlang sf tibble]; }; flip = derive2 { name="flip"; version="2.5.0"; sha256="08x5hwxaxbgc745gblja7gcy0b5wbp7jf90lkha75zl5cc9iyksl"; depends=[cherry e1071 plyr someMTP]; }; - flippant = derive2 { name="flippant"; version="1.1.0"; sha256="06aj90y7c33c1q0nw1c67vr1pfmp9fw78az6ivrbq110f2k1m12w"; depends=[assertive_files assertive_numbers assertive_properties assertive_strings assertive_types data_table ggplot2 magrittr minpack_lm plyr RcppRoll stringi withr wmtsa]; }; - flipscores = derive2 { name="flipscores"; version="0.2"; sha256="0b55qxdrn6m0pbk4aj9zr1d9s7id6pclsaz939p48jmqx07zayjg"; depends=[]; }; + flipscores = derive2 { name="flipscores"; version="1.1.0"; sha256="0pznbv8gq6jx0hd9dq6yjxyz4p75h8x0jznfa02yh4xdzjmamiw6"; depends=[car flip MASS plyr]; }; float = derive2 { name="float"; version="0.2-4"; sha256="1wf1dfybgbhvh9sa5z41xkh8liwp5n9gyydfq2mpg6bag0r457z1"; depends=[]; }; - flobr = derive2 { name="flobr"; version="0.2.0"; sha256="1pwk190bj1f8312bg95hj5y19ripm2jf6l1cbbsmfh2xw5x0xz0z"; depends=[blob checkr]; }; + flobr = derive2 { name="flobr"; version="0.2.1"; sha256="16qxsvpdznw0wlmcxc6jwf550hx7yx1rifds00lq0kxly1pc4aak"; depends=[blob chk lifecycle]; }; flock = derive2 { name="flock"; version="0.7"; sha256="1zg93p74icj4bhxnmnssj2xp6vw4yaksyavq03497v33xfpdxss7"; depends=[Rcpp]; }; flood = derive2 { name="flood"; version="0.1.1"; sha256="0nlmjh2l7dij1aqd70hhj0m550knlin3am14azqkx4pacs1kir3p"; depends=[copula evd magrittr TLMoments]; }; - flora = derive2 { name="flora"; version="0.3.0"; sha256="1nsc2q6y02shpk70p44rr7nl7pnj6as7jgdyakxqs64imwais8x2"; depends=[dplyr httr jsonlite stringdist]; }; + flora = derive2 { name="flora"; version="0.3.4"; sha256="17drlfvvrndal4cf5nw20xb9viybagvb4vll1kxdrhvsvfz5yap6"; depends=[dplyr httr jsonlite stringdist]; }; + florestal = derive2 { name="florestal"; version="0.1.1"; sha256="0a86m2d8d9g5hw1pyx8hin3j52prq2x1yf1jfwn6g5rvjwbd91xx"; depends=[BiodiversityR cowplot data_table dplyr flextable ggplot2 officer tidyr]; }; flowDiv = derive2 { name="flowDiv"; version="2.0"; sha256="1p89l8q1i610bl1bvx6lmkygb094pvydgbmd8kx0640a11rblx8v"; depends=[flowCore flowWorkspace ggplot2 gridExtra vegan]; }; flower = derive2 { name="flower"; version="1.0"; sha256="1h2fvpjrvpbyrqb8hd51sslr1ibpwa7h9fiqy9anvf2yim5j11yq"; depends=[]; }; flowfield = derive2 { name="flowfield"; version="1.0"; sha256="1cx3i0w3xq781mmms4x20fshlf1i9bwxw9bxx562crix3fq3m50j"; depends=[]; }; @@ -7904,11 +8178,12 @@ in with self; { fmri = derive2 { name="fmri"; version="1.9.3"; sha256="0is9lgp27g8dv3rmxn4mlf9m53izx5j7h974cy3ls3lq0pdp99va"; depends=[aws metafor nlme]; }; fmriqa = derive2 { name="fmriqa"; version="0.3.0"; sha256="1z09nf1c305a78c129jvs21b9z91wyhazz41wrn4bimmhfhx7szv"; depends=[ggplot2 gridExtra imager optparse pracma RcppEigen reshape2 RNifti tidyr viridisLite]; }; fmsb = derive2 { name="fmsb"; version="0.7.0"; sha256="0x1wkzfdvv4s5xmr0whcwjz4aac71gacwymj2c3mzj2bbswwlw45"; depends=[]; }; + fmtr = derive2 { name="fmtr"; version="1.0.1"; sha256="1kb0i3llg2jdals31awgv5frxbflf1h4mghblkl32spjilad48mk"; depends=[tibble]; }; foba = derive2 { name="foba"; version="0.1"; sha256="1af8whgl66v0vwzdf03b6141k3dysdc0svymlgifcga5gqkwzsl0"; depends=[]; }; focusedMDS = derive2 { name="focusedMDS"; version="1.3.3"; sha256="18s86dbbpyajscqr9frprf2vp1zif7vh4lw5m0cjskfc6gmsdp2p"; depends=[htmlwidgets]; }; - foghorn = derive2 { name="foghorn"; version="1.1.5"; sha256="08lb3d7q7g0hvg68d9lbvssch0d4vxbfriy92pyx1vi57jaavnl6"; depends=[clisymbols crayon curl httr jsonlite rvest tibble xml2]; }; - foieGras = derive2 { name="foieGras"; version="0.4.0"; sha256="0jrxdmsjxc8zjfgcv6n0kili0dzxppy0qdhqaji2ggklzynp4i33"; depends=[argosfilter dplyr furrr future ggplot2 gridExtra lubridate RcppEigen rworldmap sf stringr tibble tidyr TMB]; }; - folderfun = derive2 { name="folderfun"; version="0.1.2"; sha256="08kfw7i5xqbk07ssp4j79p3x0gf0jq2fbcq99lb10r6ndcgp5rxp"; depends=[]; }; + foghorn = derive2 { name="foghorn"; version="1.2.3"; sha256="0rm03566b7vcjphddihq32fy127cc458b8pm0rgw2h190czpgkr3"; depends=[clisymbols crayon curl httr jsonlite rlang rvest tibble xml2]; }; + foieGras = derive2 { name="foieGras"; version="0.6-9"; sha256="19jjq71bxjrc2mx6wjx6z00dcwrhcslcdx383bg02h9g48z7046k"; depends=[assertthat dplyr furrr future ggplot2 lubridate patchwork purrr RcppEigen rworldmap sf stringr tibble tidyr TMB trip wesanderson]; }; + folderfun = derive2 { name="folderfun"; version="0.1.4"; sha256="0rns8590r1897lj0gyrlj0zbaxjw2gjaxwnwdxiiw2kvyq7mjkis"; depends=[]; }; fontBitstreamVera = derive2 { name="fontBitstreamVera"; version="0.1.1"; sha256="0nipdlmhjv1wr3aidcl97nk6mppdkd65krgwqnhdsnv0jpfv761j"; depends=[]; }; fontHind = derive2 { name="fontHind"; version="0.1.1"; sha256="0qz3bj8vdy6jayy84p3vyxfwqll4v4qlklwq9wl981ii2k7g0vxf"; depends=[extrafont ggplot2 hrbrthemes]; }; fontLiberation = derive2 { name="fontLiberation"; version="0.1.0"; sha256="1w1rl0g4ayyp8lwppmz9yzj9cizg7i50g07216jkm1q5w0is9pmc"; depends=[]; }; @@ -7925,9 +8200,9 @@ in with self; { forecTheta = derive2 { name="forecTheta"; version="2.2"; sha256="1a7ip3czm8k82kb8dx95m8q47kjhifdj51gzavd1zj9ni3vwbhfn"; depends=[forecast tseries]; }; forecast = derive2 { name="forecast"; version="8.12"; sha256="1ycj5z4wd5a16nlcjy07dqm8jkih240xa02cn4wvysnnhkapyq7b"; depends=[colorspace fracdiff ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries urca zoo]; }; forecastHybrid = derive2 { name="forecastHybrid"; version="5.0.18"; sha256="0sgz50dl2939jl3azkxpv8kd00jcbkcgd5s6cng3kivrbrfslahp"; depends=[doParallel foreach forecast ggplot2 purrr thief zoo]; }; - forecastML = derive2 { name="forecastML"; version="0.8.0"; sha256="18a05lp4v4gpplldwx3kwkblnhkplgjiis0jq529sjxk53plyfi1"; depends=[data_table dplyr dtplyr future_apply ggplot2 lubridate magrittr purrr rlang tibble tidyr]; }; + forecastML = derive2 { name="forecastML"; version="0.9.0"; sha256="01lqbmdmd6sk5xka19i9d466bzihxgp652v0kr13r82b591f67vq"; depends=[data_table dplyr dtplyr future_apply ggplot2 lubridate magrittr purrr rlang tibble tidyr]; }; forecastSNSTS = derive2 { name="forecastSNSTS"; version="1.3-0"; sha256="0p47x7ic2ib7znqbp8br4b2ci75f5w8x413z9g4n30m002p7irp1"; depends=[Rcpp]; }; - foreign = derive2 { name="foreign"; version="0.8-78"; sha256="01anirfbfa3ip5pyqv72cg4x7p0jsppmbvxrllw7bm28fl1hgiyq"; depends=[]; }; + foreign = derive2 { name="foreign"; version="0.8-80"; sha256="0wjdi3qn9famsxmpdyyahidaid0yhxlpx4ad9k8vrxhxd6xspasp"; depends=[]; }; forensic = derive2 { name="forensic"; version="0.2"; sha256="0kn8wn6p3fm67w88fbarg467vfnb42pc2cdgibs0vlgzw8l2dmig"; depends=[combinat genetics]; }; forensim = derive2 { name="forensim"; version="4.3"; sha256="1jhlv9jv832qxxw39zsfgsf4gbkpyvywg11djldlr9vav7dlh3iw"; depends=[tcltk2 tkrplot]; }; forestChange = derive2 { name="forestChange"; version="1.0"; sha256="1d9qza1f16sz8pyafn3q7cyg9hw0ix4nqcgb9ipcnvmkyrc00f1a"; depends=[curl dplyr gdalUtils ggplot2 landscapemetrics raster rgdal rvest sp tibble xml2]; }; @@ -7938,15 +8213,16 @@ in with self; { forestSAS = derive2 { name="forestSAS"; version="1.0.1"; sha256="1jva2nivvcrczvqfhxa6vv1hsazp5m7djgfp7mfp1kpr136lyf2d"; depends=[spatstat]; }; forestinventory = derive2 { name="forestinventory"; version="0.3.1"; sha256="0brbg0q8j9ymvm527db7063kgs6i6flja7mxqk7yvaf3dh8wsi46"; depends=[ggplot2 plyr tidyr]; }; forestmangr = derive2 { name="forestmangr"; version="0.9.2"; sha256="0f65yb4kixbvr8jp6063rgd8hxd5pycsx1dx9477222rmhp6f723"; depends=[broom car dplyr FinCal forcats formattable ggdendro ggplot2 ggpmisc ggthemes gridExtra magrittr minpack_lm plyr purrr rlang scales systemfit tibble tidyr tidyselect]; }; - forestmodel = derive2 { name="forestmodel"; version="0.5.0"; sha256="09gwgsh42gkmhs8ijq5xfbbkb1hk6sjb0q32mw2ymc6x9ycr1a9j"; depends=[broom dplyr ggplot2 lazyeval tibble]; }; - forestplot = derive2 { name="forestplot"; version="1.9"; sha256="1vcma7dvlvyhz6n25pj19h70i8xmz6vibkf945qkmj5hhrb7zxia"; depends=[checkmate magrittr]; }; + forestmodel = derive2 { name="forestmodel"; version="0.6.2"; sha256="0pl9r8j2qd00b9kl585b4k54kic5fvzc56i8cn3hm5yp2hrrwyws"; depends=[broom dplyr ggplot2 rlang tibble]; }; + forestplot = derive2 { name="forestplot"; version="1.10"; sha256="0sv86yn8fs912yaigi9ig43vnyrqkx1jpy5qhpnjl3kqiviqzr6s"; depends=[checkmate magrittr]; }; forestr = derive2 { name="forestr"; version="2.0.2"; sha256="1kz8f3x2dmsprj2r23gz61fpwg7n14nbjxr16x4cpixvnk427p94"; depends=[dplyr ggplot2 moments plyr tibble tidyr viridis]; }; + forestry = derive2 { name="forestry"; version="0.1.0"; sha256="0q7m0mrig8z2b2z2fng58qlqa6g58xlhfzchil2dvjh6xf3qvsh8"; depends=[data_tree]; }; foretell = derive2 { name="foretell"; version="0.2.0"; sha256="18vi438n480gizfhnciw67gngvbjnmky19186b1wy75av7fgc1gp"; depends=[nloptr]; }; forge = derive2 { name="forge"; version="0.2.0"; sha256="0pjfzsc35agkh0zfw2czwajkbsyn6liys5irl5bhz5r1vim3jmwa"; depends=[magrittr rlang]; }; formatR = derive2 { name="formatR"; version="1.7"; sha256="1nsxbrx31k3y6yql30qkrvdfyznlia2qfvwv95mfiy7m7wdn4rm3"; depends=[]; }; formattable = derive2 { name="formattable"; version="0.2.0.1"; sha256="1s7jjgm0j24vdwm39933ygh6xnxcfvzy4kl2mmfgas4czfcmd4rf"; depends=[htmltools htmlwidgets knitr rmarkdown]; }; formula_tools = derive2 { name="formula.tools"; version="1.7.1"; sha256="15d3ikfmsh9zszfgfkrxb3jkipl41inm7n6bhs73kwlnklnygq2g"; depends=[operator_tools]; }; - formulaic = derive2 { name="formulaic"; version="0.0.6"; sha256="020sbchj445kwwfj17ixmhsgl38qpwb723r6r8pbc6b3q0zw4b3d"; depends=[data_table DT]; }; + formulaic = derive2 { name="formulaic"; version="0.0.7"; sha256="1nyqxkjp21ygzqybp770863gn1h1s20bc4yakl7q9wnd4j8xkp57"; depends=[data_table]; }; formulops = derive2 { name="formulops"; version="0.5.0"; sha256="1mkpv5xjykrhgknq0gh4yg2a3j4xb8q2d6dh0wv8zd9h59hvrzda"; depends=[]; }; forrel = derive2 { name="forrel"; version="1.0.1"; sha256="0apx62cwg3xb64gmflgq500h8vclqbwazd9aj0s6c7ix0j0phs73"; depends=[glue maxLik pedmut pedprobr pedtools]; }; fortunes = derive2 { name="fortunes"; version="1.5-4"; sha256="109ly9kpfn6hy294ava8795wy5z9l1bnl98hhhv8kn9naf4camdg"; depends=[]; }; @@ -7958,48 +8234,49 @@ in with self; { fourierin = derive2 { name="fourierin"; version="0.2.4"; sha256="140721p4h5mjr7r25ckv8wfhbj88xw6v47b613r5bpalg8gw650l"; depends=[Rcpp RcppArmadillo]; }; fpCompare = derive2 { name="fpCompare"; version="0.2.3"; sha256="1pyv52rvbqd5v6ns86pc119q019ps070bd819x7a98s4hmbf76zq"; depends=[]; }; fpa = derive2 { name="fpa"; version="1.0"; sha256="0kgpl9qq0l10h0vdd2f8vnir0kdylh1jvvv5z4d9ygj1pl9qywhk"; depends=[fields reshape]; }; - fpc = derive2 { name="fpc"; version="2.2-5"; sha256="10504hzivbn89ip0cd5bcxd36ivbgin1lw1xhyh3xfckcm25v1a5"; depends=[class cluster diptest flexmix kernlab MASS mclust prabclus robustbase]; }; + fpc = derive2 { name="fpc"; version="2.2-7"; sha256="1xnp3j36hggfg675v39mnr6rgvp7i11pfng7nmyy3k2ldgklz0j9"; depends=[class cluster diptest flexmix kernlab MASS mclust prabclus robustbase]; }; fpca = derive2 { name="fpca"; version="0.2-1"; sha256="13b102026xlfb7c2rb3xsqsymm7xpmaxppaafjkb5dx0b1lz0jrc"; depends=[sm]; }; fpeek = derive2 { name="fpeek"; version="0.1.1"; sha256="0x7q5rl02ih0zmjfzvsc1vmn7s7yzdkf2gbmzc3mh7qadwpnf89p"; depends=[Rcpp]; }; fpest = derive2 { name="fpest"; version="0.1.1"; sha256="013r8295spm02j558aqvnrnbkg2g73gl5vi4lqzngbw8yr8qlkri"; depends=[]; }; - fplot = derive2 { name="fplot"; version="0.2.1"; sha256="0ryb1pfx1qp4vlzpy4a3c0wqk6k9ds44xy12n056jyqiggc7kd12"; depends=[data_table Formula Rcpp]; }; - fplyr = derive2 { name="fplyr"; version="1.1.0"; sha256="0s76hzmqal9fmpwgg996l86vz156lwkhfb2ag996m4h6m37zgqx7"; depends=[data_table iotools]; }; + fplot = derive2 { name="fplot"; version="1.0.0"; sha256="0c8rgw23dvmwk2ssy8mbn29am72k6vji0xymz9rn5lrlmjk1lbpb"; depends=[data_table dreamerr Formula Rcpp]; }; + fplyr = derive2 { name="fplyr"; version="1.2.1"; sha256="0k53rc7p0khv3mssghplz3ggzni2vl168mbwg72dgsn9b8nm98sy"; depends=[data_table iotools]; }; fpmoutliers = derive2 { name="fpmoutliers"; version="0.1.0"; sha256="108bp3smk9jnckd5237xly4ywmal03rq1kidq5z61l6zrhc3yfh9"; depends=[arules doParallel foreach Matrix pmml pryr R_utils XML]; }; fpop = derive2 { name="fpop"; version="2019.08.26"; sha256="1gz5db9hlkvzkp5y7zzn9h57qz7ilpdyxyf05vy9kxbj36kgc19n"; depends=[]; }; fpow = derive2 { name="fpow"; version="0.0-2"; sha256="0am3nczimcfrm9hi02vl2xxsh703qjmr2j11y014mll3f2v1l8cy"; depends=[]; }; fpp = derive2 { name="fpp"; version="0.5"; sha256="1jqnx6bgpvnbbj2fa2b6m6aj8jd5cb9kz877r8kp7a5qj62xv1ww"; depends=[expsmooth fma forecast lmtest tseries]; }; fpp2 = derive2 { name="fpp2"; version="2.3"; sha256="1krrvwg25qjfpfjdwd3n0d87ihl4zf7y1bnh6gbi92sdja3ljq48"; depends=[expsmooth fma forecast ggplot2]; }; - fpp3 = derive2 { name="fpp3"; version="0.2"; sha256="0346g5cj876kd34hvkjl3yn25i3k3ypbnp5qnqk7nahz8akdk0g2"; depends=[cli crayon dplyr fable fabletools feasts ggplot2 lubridate magrittr purrr rstudioapi tibble tidyr tsibble tsibbledata]; }; + fpp3 = derive2 { name="fpp3"; version="0.3"; sha256="0nwjr3hi3ijf44iqwx769hcfzp1kccw7w0lqakdv499k6gybky1b"; depends=[cli crayon dplyr fable fabletools feasts ggplot2 lubridate magrittr purrr rstudioapi tibble tidyr tsibble tsibbledata urca]; }; fptdApprox = derive2 { name="fptdApprox"; version="2.2"; sha256="10f9n6cx5n6djblj97a2zw4khaj3phchmq4l8gk2fy535jjqaqlr"; depends=[]; }; fracdiff = derive2 { name="fracdiff"; version="1.5-1"; sha256="1dhfjlhr9sb38qgpsx0sm73l9lgc13d0fk32l7fmjfnalhr3n45q"; depends=[]; }; fracprolif = derive2 { name="fracprolif"; version="1.0.7"; sha256="124p5x59smqf8ba0xwhlq69w77zga2bv9plzwkadf700lzvaj2wx"; depends=[emg numDeriv]; }; - fractal = derive2 { name="fractal"; version="2.0-4"; sha256="18lr9z0gslvfc3z8vyj3krqj3bfhg60zv1fzinrwwkc4cpk1w7mp"; depends=[ifultools MASS sapa scatterplot3d splus2R wmtsa]; }; fractaldim = derive2 { name="fractaldim"; version="0.8-4"; sha256="0fln4qn0d79agnnlzi8b9g9qn90zynq1cg9v5isiyi71345v45nr"; depends=[abind]; }; fractional = derive2 { name="fractional"; version="0.1.3"; sha256="1jz83y53s0xdphh1z3v3z7xhcmhx7rp0iiazw2vdsx2747r3rirn"; depends=[Rcpp]; }; - fragility = derive2 { name="fragility"; version="1.0"; sha256="13pb64i0mxcdvlpn71qs0vkv7rw1mxiy2cfnyw2ncnallw32ph5i"; depends=[metafor netmeta plotrix]; }; - fragilityindex = derive2 { name="fragilityindex"; version="0.1.0"; sha256="06f7w0ff8mmydgylz5a0z29fc78spvmay3sjq0rz9k44w4bb9z3q"; depends=[pbapply stringr survival]; }; + fragility = derive2 { name="fragility"; version="1.1"; sha256="0gjxc4bykqjmj54mxjh27bzkbf8ydrzzzlb7xnq9jljmr139zhyk"; depends=[metafor netmeta plotrix]; }; frailtyEM = derive2 { name="frailtyEM"; version="1.0.1"; sha256="0ajqmn8353va8k3idsl90xsrhpdqarfmvg84d4kwayxlqy6dmbb0"; depends=[expint ggplot2 magrittr Matrix msm numDeriv Rcpp survival tibble]; }; frailtyHL = derive2 { name="frailtyHL"; version="2.3"; sha256="115iv1d2c9mvviick8b24bn6kdbsvnf21nvfjm9a8dk0x07hrv5g"; depends=[cmprsk Matrix survival]; }; frailtySurv = derive2 { name="frailtySurv"; version="1.3.6"; sha256="0k41a5x7qzrajk2l59q5b8kjj084vids4ailr8r7r2lnf6r9xrav"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; }; - frailtypack = derive2 { name="frailtypack"; version="3.2.0"; sha256="11159b60j6pk5vvvc8vlb606gjwbfc7d7aqb896aba2rciwddk6n"; depends=[boot doBy jsonlite MASS nlme rhandsontable shiny shinyBS shinydashboard shinyjs shinythemes statmod survC1 survival]; }; + frailtypack = derive2 { name="frailtypack"; version="3.3.0"; sha256="15930514k9mq6v43lk4bzbrp7n1n7kn0fpsi6qch0379kzl3lba3"; depends=[boot doBy jsonlite MASS nlme rhandsontable rootSolve shiny shinyBS shinydashboard shinyjs shinythemes statmod survC1 survival]; }; frair = derive2 { name="frair"; version="0.5.100"; sha256="1j557dqvc5xiz7xbl4h7vp55pc3hly8ci01qy36p02vlxhzf4hj3"; depends=[bbmle boot lamW]; }; frambgrowth = derive2 { name="frambgrowth"; version="0.1.0"; sha256="1xmy1zxp7aa2n8frlxhn1bl41zda1jldvvxb3q41yam3pslc8m1q"; depends=[]; }; franc = derive2 { name="franc"; version="1.1.2"; sha256="1bhszr0g0blx0jmdwxkicn1zz1fhfgyhzsncgy3181i987429gdg"; depends=[jsonlite]; }; frapplot = derive2 { name="frapplot"; version="0.1.3"; sha256="12924szk2p0582nv97gi8pxrbv41zqpjryc6jqgg4llhp7ydz7xf"; depends=[]; }; frbs = derive2 { name="frbs"; version="3.2-0"; sha256="0biv6j31qi0f4i063ygmbp6v6ws1nxijn5kyhg5sz1rnbr0msl28"; depends=[]; }; + frechet = derive2 { name="frechet"; version="0.1.0"; sha256="1x5wmq704pxvsp22y6k12c2s46hhrd6finiy2q8hgvd9ss10r1b7"; depends=[corrplot fdadensity fdapace Matrix pracma rosqp]; }; freealg = derive2 { name="freealg"; version="1.0-0"; sha256="0a3s89379lxr0dw068wfwzlqjq70zbaxil1vwwa4bf2i7s46mcgl"; depends=[Rcpp]; }; freegroup = derive2 { name="freegroup"; version="1.1-0"; sha256="0ssshs2d6l2ip1xx9x581w0cdnd2459a1mh360ybwajkjgak2ci6"; depends=[magic magrittr plyr]; }; freesurfer = derive2 { name="freesurfer"; version="1.6.7"; sha256="1wk0xjx0a99zm7gdn7i5z92wmqnlzng6n6g8w9whxvmy0rq6i19j"; depends=[neurobase R_utils reshape2]; }; - freesurferformats = derive2 { name="freesurferformats"; version="0.1.9"; sha256="02qqp81b93dv84g3gbsl1705j5hj6ndv45npbbh35v5rsgswz9d9"; depends=[pkgfilecache]; }; + freesurferformats = derive2 { name="freesurferformats"; version="0.1.11"; sha256="0n5spc021dr15qz1prg76xfn814x9bgfczxc69qdpjz8q4f0cacg"; depends=[pkgfilecache xml2]; }; freetypeharfbuzz = derive2 { name="freetypeharfbuzz"; version="0.2.5"; sha256="11agmqdp6sy32jk2840cj8wmgywq0yjar18zsnsn56qfvn4b1k1c"; depends=[fontquiver]; }; + frenchCurve = derive2 { name="frenchCurve"; version="0.1.0"; sha256="1b8lkmhydz4jq8h5p117fwaygbsillzcfx0p7w0ljj8b8v57r6l9"; depends=[sp]; }; freqdist = derive2 { name="freqdist"; version="0.1"; sha256="1pb45jabv9s3qa7v1isd5wm9b0g9p04q5h18spcaax8397s0d2fv"; depends=[]; }; freqdom = derive2 { name="freqdom"; version="2.0.1"; sha256="0ig0ygnlcb5ndjjm5x8jpp37gvgwli9xv6zsvbbgfh72q418qswp"; depends=[matrixcalc mvtnorm]; }; freqdom_fda = derive2 { name="freqdom.fda"; version="0.9.1"; sha256="15wq9s3v441dybc8kglpbv9hdvsr9rjjq4qp4d2ipxglfp0iqj9p"; depends=[fda freqdom mvtnorm]; }; freqparcoord = derive2 { name="freqparcoord"; version="1.0.1"; sha256="011p8xh0i0x0w5rv5qz5a7fxwdhxd8l2bqi9bxv5almxd0y7ajqx"; depends=[FNN GGally ggplot2 mvtnorm]; }; + freqtables = derive2 { name="freqtables"; version="0.1.0"; sha256="0d2yibb8689786icfladxfm51sqng909wigvqmwij9lkqq14rd80"; depends=[dplyr rlang stringr]; }; frequency = derive2 { name="frequency"; version="0.4.0"; sha256="1m3hrbkspnmcl956f7m4fpfd980qdxmyagsm5kd79dzh3qka2xly"; depends=[DT ggplot2 gtools knitr rmarkdown]; }; frequencyConnectedness = derive2 { name="frequencyConnectedness"; version="0.2.2"; sha256="1mn20isy146ya4i33xxszmhvdwqkkg0cd18002mq8bvnkb65fxd2"; depends=[knitr pbapply urca vars]; }; frequentdirections = derive2 { name="frequentdirections"; version="0.1.0"; sha256="0rmifh221c8z3cqyqg0bfxnih9f64hvv98jz44i6grnlablfwwgw"; depends=[ggplot2]; }; - fresh = derive2 { name="fresh"; version="0.1.0"; sha256="101ycxwk1z59zb2p6hfg4a8l565gfqbzmhw60nz22fql4gyhl8q9"; depends=[htmltools rstudioapi sass shiny]; }; + fresh = derive2 { name="fresh"; version="0.2.0"; sha256="1787mm6w2s5x9scxy7r9cb77rgpmy4ngwkn4z8g3gs48mrab4bd9"; depends=[htmltools rstudioapi sass shiny]; }; frm = derive2 { name="frm"; version="1.2.2"; sha256="1dl0vca9r2dams99sc13pfpi0b3yb02x59f4c1jz07zz005c8l23"; depends=[]; }; frmhet = derive2 { name="frmhet"; version="1.1.3"; sha256="07sgsfhzrci8g1b0gicjfca1mgd8ppfqpkpp4q9bdxnjvdvlf45s"; depends=[]; }; frmpd = derive2 { name="frmpd"; version="1.1.0"; sha256="0irgqdr0vr8k408lsxcrjkjbjvqvmy5mnjw9c1ghs86isrp5mciz"; depends=[]; }; @@ -8008,10 +8285,11 @@ in with self; { frontier = derive2 { name="frontier"; version="1.1-8"; sha256="1qhasynm23yihmhb4d7w72msq2z1xf4xnzrkah3z8jv11yxhg1i2"; depends=[Formula lmtest micEcon miscTools moments plm]; }; frontiles = derive2 { name="frontiles"; version="1.2"; sha256="08qq25wbylvhvmq34wggyj0hwdlxfs9rfs8gjqsrg50xccchniqi"; depends=[classInt colorspace rgl sp]; }; frost = derive2 { name="frost"; version="0.0.4"; sha256="03snjlq4b9j84v0yimc3xzgjvryzzi76b9n53k0s2lvv1yzrri7x"; depends=[]; }; + frostr = derive2 { name="frostr"; version="0.2.0"; sha256="1bsgdskdbyryq7jvhnb4z4xb1m5vadqv00qjlkgp41xh71wp2brs"; depends=[httr jsonlite tibble tidyr]; }; frt = derive2 { name="frt"; version="0.1"; sha256="1qy76a1wkznaqzlyj1nq74mf1pnyly1s8gnff8q30zfccqk68cxv"; depends=[]; }; - fs = derive2 { name="fs"; version="1.4.1"; sha256="0kksig9pk8aid9l6r250na8z8j9919jvs20lj0s6m9bcybgh74df"; depends=[]; }; + fs = derive2 { name="fs"; version="1.5.0"; sha256="15rqc3ljmcmgfvadj1j1kq7kvibagxic8sgplhlcdqqxax9idprn"; depends=[]; }; fsMTS = derive2 { name="fsMTS"; version="0.1.5"; sha256="1vxj9wkzpbk44hby4fdyhj72748c65by612kpphs6vmgzmw4y471"; depends=[freqdom glasso lars mpmi randomForestSRC]; }; - fsbrain = derive2 { name="fsbrain"; version="0.1.0"; sha256="0gwn8cnafcvkmzw7lf5q63xyfkhbj8wy1szcwmazkpkmg0zlwwcv"; depends=[data_table dplyr fields freesurferformats pkgfilecache reshape rgl squash]; }; + fsbrain = derive2 { name="fsbrain"; version="0.3.0"; sha256="01jvlml8id64c7n4zr3ggkknv0nky8fap4cd3xi54rvdknhqsjwa"; depends=[data_table fields freesurferformats pkgfilecache reshape rgl squash]; }; fscaret = derive2 { name="fscaret"; version="0.9.4.4"; sha256="18fhyfl3f8syyc3g937qx87dmwbv7dray6b97p1s6lnssiv61gsw"; depends=[caret gsubfn hmeasure]; }; fsdaR = derive2 { name="fsdaR"; version="0.4-9"; sha256="1iaqqdwhh29fhq4r64adfrjmsyzq4v60bz9111vkazj4kr45wxxv"; depends=[ggplot2 rJava rrcov]; }; fsia = derive2 { name="fsia"; version="1.1.1"; sha256="0id7cnswrqylgpwjil1zfn89ryrdpl20fim8x1srl8s1hm5bg35r"; depends=[]; }; @@ -8019,32 +8297,34 @@ in with self; { fso = derive2 { name="fso"; version="2.1-1"; sha256="0hn2ypm0nwfbmnh9il78pi30x7gfmayfangqyh0d63ngyz40bvma"; depends=[labdsv]; }; fssemR = derive2 { name="fssemR"; version="0.1.6"; sha256="1l80anvlf21kvwb95w5mn0i2q773z0vbznx1lqvgsawprhcdiv20"; depends=[glmnet igraph MASS Matrix mvtnorm qtl Rcpp RcppEigen stringr]; }; fst = derive2 { name="fst"; version="0.9.2"; sha256="11r35v8irv6a4gnbw06wrlipsrqq2m86dmcfijp5k07n59hgipi3"; depends=[Rcpp]; }; + fstcore = derive2 { name="fstcore"; version="0.9.4"; sha256="1gdjwkq7i3hrnazsj8sqsalkfiz35397azlprngmn2n704ql0vch"; depends=[Rcpp]; }; fsthet = derive2 { name="fsthet"; version="1.0.1"; sha256="0z6az1jcvdahgn97r6cpj1s6fn0lvr7j12gcw2r7wbpajrvyl5j6"; depends=[]; }; ftDK = derive2 { name="ftDK"; version="1.0"; sha256="1xs2rr2afjza97kpym5zkas3k78pilxjlh7lp1gc66banldr71g2"; depends=[dplyr httr pbapply purrr tibble]; }; ftExtra = derive2 { name="ftExtra"; version="0.0.1"; sha256="0zgz4sjxx6ls27afb9djmxvwq46pp5jwxxbb87wnjc9fn5vvnnxy"; depends=[dplyr flextable jsonlite magrittr purrr rlang rmarkdown stringr tidyr tidyselect]; }; ftnonpar = derive2 { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; }; fts = derive2 { name="fts"; version="0.9.9.2"; sha256="08pwhi19db173d4nsk5rl8xa8qmaddj4bn3cjxb8ql4kny59i57q"; depends=[BH zoo]; }; - ftsa = derive2 { name="ftsa"; version="5.6"; sha256="1zg15jf65hi8gg5s6xmk70x6w9k2ay1b5nf7xnvllis4hi9n8s3j"; depends=[colorspace fda forecast MASS pcaPP pdfCluster rainbow sde]; }; + ftsa = derive2 { name="ftsa"; version="5.8"; sha256="1mzhzc2x8xqlzf3qchjf94dwhnig0y23900iyh2bzjpy5wi8c58d"; depends=[colorspace e1071 ecp fda forecast MASS pcaPP pdfCluster rainbow sde strucchange]; }; ftsspec = derive2 { name="ftsspec"; version="1.0.0"; sha256="12f9yws1r26i240ijq0xqprl3pgbw50wv68jsm75ycplbs2jsyhs"; depends=[sna]; }; - fuel = derive2 { name="fuel"; version="1.0.2"; sha256="0ziw370ch8g2hnlimxfgski4n28b83jnwrhlh7ibszk0lz593rkr"; depends=[]; }; + fuel = derive2 { name="fuel"; version="1.2.0"; sha256="0pzb77g6l8cz5p7y6czck23kp7hs5zp78k87b5yh0avjlr7ads74"; depends=[]; }; fueleconomy = derive2 { name="fueleconomy"; version="1.0.0"; sha256="16a8wyliiidi6rw14ksimygfkl4a7yhxvss7l9bcvr1wfiplrn65"; depends=[]; }; fugeR = derive2 { name="fugeR"; version="0.1.2"; sha256="0kd90s91vzv0g3v9ii733h10d8y6i05lk21p5npb3csizqbdx94l"; depends=[Rcpp snowfall]; }; fugue = derive2 { name="fugue"; version="0.1.7"; sha256="1myvi9cizxvahb6wn2k26v3x958xsrm2p414ar05injmfjdfnsmi"; depends=[]; }; fullfact = derive2 { name="fullfact"; version="1.3"; sha256="1dy5ppa22i9axqcwx2184qv2vjcbml0yh5b89zx9rg2zsnv4ygym"; depends=[afex lme4]; }; - fulltext = derive2 { name="fulltext"; version="1.4.0"; sha256="0q6akbq48jklj620k73ff0z5i8kqyrs8bxy75cys5lnxnb0wampq"; depends=[aRxiv crminer crul data_table digest hoardr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; }; + fulltext = derive2 { name="fulltext"; version="1.5.0"; sha256="0yxy37c7xpp86jqpa9k8i23pa0hqww5q10jd3k1gn2m0va702yz7"; depends=[aRxiv crminer crul data_table digest hoardr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; }; fun = derive2 { name="fun"; version="0.2"; sha256="0944m10nym4rsb6rhdwqn04c7l3bz43jcw3q8hv4vljdf5kyg9ar"; depends=[]; }; - funData = derive2 { name="funData"; version="1.3-4"; sha256="14s86s8ap52qr50cwmiqhkfnnb5ckf9hnmzslfmz44k3ydp9d7hp"; depends=[abind fields foreach]; }; + funData = derive2 { name="funData"; version="1.3-5"; sha256="0qz6kywd6xp292yvzf5znpw0qd02zadmp29jd1kchnydbf3sk0mh"; depends=[abind fields foreach]; }; funFEM = derive2 { name="funFEM"; version="1.1"; sha256="08798lvryykrxfvp2297anzl4gi81gwvc1qyyzq16nafjf65kwfy"; depends=[elasticnet fda MASS]; }; funGp = derive2 { name="funGp"; version="0.1.0"; sha256="03khkwdq2kc7wxr7jr50kms4w63w6iz90431d960dg4s0gff29h8"; depends=[doFuture foreach future knitr microbenchmark progressr qdapRegex scales]; }; funHDDC = derive2 { name="funHDDC"; version="2.3.0"; sha256="1dym1bzywng5yjfzpppxx043pwcbvrxxq0bn1d6xqqkqcpzn2zhp"; depends=[fda MASS]; }; - funLBM = derive2 { name="funLBM"; version="1.0"; sha256="0krx5v1lakrrxk0j249k7sr7c6r40yg1l8l10laf4444j2qn8rjp"; depends=[fda funFEM]; }; - funModeling = derive2 { name="funModeling"; version="1.9.3"; sha256="0dqpb5igdpdnbwr6y8wr11hcn84clshnx0q913512jvcrx0h0pd9"; depends=[cli dplyr entropy ggplot2 gridExtra Hmisc lazyeval moments pander RColorBrewer reshape2 ROCR scales stringr]; }; + funLBM = derive2 { name="funLBM"; version="2.1"; sha256="1phxqjri4pb65lfx6nbldvqq61cw1n0gjq5pckry3sjzylsmz5bi"; depends=[abind fda funFEM ggplot2]; }; + funModeling = derive2 { name="funModeling"; version="1.9.4"; sha256="1zhmazw77phcdwj9wwxpwjfhwd8wyjc538acqiwq9f6sz8fw1cbb"; depends=[cli dplyr entropy ggplot2 gridExtra Hmisc lazyeval moments pander RColorBrewer reshape2 ROCR scales stringr]; }; funbarRF = derive2 { name="funbarRF"; version="1.0.2"; sha256="14xfhwp4vffl215fqdxdxpmjblyw75ylxqjzja794adywm06sz19"; depends=[BioSeqClass Biostrings randomForest]; }; + func2vis = derive2 { name="func2vis"; version="1.0-1"; sha256="1d2dy7icrgp47szmizhk9x5azsynsv1qp6igxia2mlzkfbk27ffz"; depends=[devtools ggplot2 ggrepel igraph]; }; funchir = derive2 { name="funchir"; version="0.2.0"; sha256="1rj5khv1xcaaip5xh8kcsp2jgmbmnc9q5kwr46l4mxvxyndndi1k"; depends=[data_table]; }; functional = derive2 { name="functional"; version="0.6"; sha256="120qq9apg6bf39n9vnp68db5rdhwvnj2vi12a8j8243vq8kqxdqr"; depends=[]; }; functools = derive2 { name="functools"; version="0.2.0"; sha256="0g62jdia3n09vq8mx1m2r4nl3jfcadzpym0wkldzzzjcfs90vl6b"; depends=[]; }; funest = derive2 { name="funest"; version="0.0.1.3"; sha256="1pi556klfnbmrsx5c0f3v4hdn5m4dxxm71ijivanpwfqnfls8xh3"; depends=[funData MFPCA pec prodlim purrr ranger Rdpack survival tdROC]; }; - fungible = derive2 { name="fungible"; version="1.95.2"; sha256="031z94a5ayc8sd7vgwj0g1wxzq28mibnr9a0wskgfgvhm80f8pmd"; depends=[clue GPArotation lattice MASS mvtnorm nleqslv Rcsdp RSpectra]; }; + fungible = derive2 { name="fungible"; version="1.96.3"; sha256="1c8yc7mazvir42vq27f5bascbaswqx84qhf1r7kwkm72cxg4m1j2"; depends=[clue GPArotation lattice MASS mvtnorm nleqslv Rcsdp RSpectra]; }; funique = derive2 { name="funique"; version="0.0.1"; sha256="0p9k4nxjns1xid9vmslkaap0hm6yq6pbyvylgygd808if4q1z8k6"; depends=[]; }; funnelR = derive2 { name="funnelR"; version="0.1.0"; sha256="143lb048krgh8rkkz6sm8h464kdy62w29fvvyar795vqi10bb5fy"; depends=[ggplot2]; }; funneljoin = derive2 { name="funneljoin"; version="0.1.0"; sha256="17g1mvq9z5m29r0v2r2nn8980j515jamnpwvvnzj83vk84bz94rq"; depends=[broom dplyr glue magrittr purrr rlang tibble tidyr]; }; @@ -8062,9 +8342,9 @@ in with self; { futile_options = derive2 { name="futile.options"; version="1.0.1"; sha256="0w15agpi88y3qkv6fl72zy2pzyplzgvnj41a4ixhg64mw1sck73s"; depends=[]; }; futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; }; futility = derive2 { name="futility"; version="0.4"; sha256="0zjb87brz7pkx3nq3q30y69cmcxpqqsra447p60qh7005kgr9vx4"; depends=[]; }; - future = derive2 { name="future"; version="1.17.0"; sha256="0d4y7gwcgqx2z0y6h5bh4lrz0m7b0inii5cjcq0kk8za762bi8rg"; depends=[digest globals listenv]; }; + future = derive2 { name="future"; version="1.18.0"; sha256="01fp8kgjf0k6c83q1w3dy9z90g72cc9d0004d1qw6n1j65nwxg4f"; depends=[digest globals listenv]; }; future_BatchJobs = derive2 { name="future.BatchJobs"; version="0.16.2"; sha256="08lh1sp0v1vagi34s218a1ygj63whkf3s9w0kyf25v64gsdavkzc"; depends=[BatchJobs future R_utils]; }; - future_apply = derive2 { name="future.apply"; version="1.5.0"; sha256="095a681ngbwbp7v53ladwya7ar8fgwnlgr3r1yklf3vdxwd54xll"; depends=[future globals]; }; + future_apply = derive2 { name="future.apply"; version="1.6.0"; sha256="1zbfycjfvxnrigm6l2fd2zgnw96g0apiw426c73gkv3xv7bdy6ms"; depends=[future globals]; }; future_batchtools = derive2 { name="future.batchtools"; version="0.9.0"; sha256="1srcc4vv9nm49nq8llxik9ys4f45lz2shwlc4l9wp0zmxinzi3sr"; depends=[batchtools future]; }; future_callr = derive2 { name="future.callr"; version="0.5.0"; sha256="0rjvjmffc4m9kr4p40q1gyv1zf49m8q0fb04kmdi7a8q2jfflpna"; depends=[callr future]; }; future_tests = derive2 { name="future.tests"; version="0.2.1"; sha256="1f75y7s9yrsz8c3vbsvp55zllp6sbpjrxbxknm1rfhg4sc2ak33c"; depends=[cli crayon future prettyunits sessioninfo]; }; @@ -8074,13 +8354,13 @@ in with self; { fuzzyRankTests = derive2 { name="fuzzyRankTests"; version="0.3-10"; sha256="1xj5xsm2s4ylv3b8v80qny201iddjym07h8d50asas7xy1k7945z"; depends=[]; }; fuzzySim = derive2 { name="fuzzySim"; version="3.0"; sha256="18h0lxzqyp7fzjv7vnyfbwpaxjx15sw0h9l5yq846xzhkza79xxp"; depends=[]; }; fuzzyforest = derive2 { name="fuzzyforest"; version="1.0.8"; sha256="0sb7qia01a5h6p12riq6vdq9likmqb6i949axsxszy5sf1zk50v5"; depends=[doParallel foreach ggplot2 mvtnorm randomForest]; }; - fuzzyjoin = derive2 { name="fuzzyjoin"; version="0.1.5"; sha256="1lz7zxpqn206rgk956c4z9sfj3rg66pwcyci7d3r63cbgynq1gcs"; depends=[dplyr geosphere purrr stringdist stringr tibble tidyr]; }; + fuzzyjoin = derive2 { name="fuzzyjoin"; version="0.1.6"; sha256="0s5rhqz8vih4za3a8k1k7i3gq8hj0w7bqnakw40k6mg87jvyzsj7"; depends=[dplyr geosphere purrr stringdist stringr tibble tidyr]; }; fuzzyreg = derive2 { name="fuzzyreg"; version="0.5.1"; sha256="19ppb1m655z3n7h4wcd5bwjciw4ynjbi883ki50mr5di3zy64n4r"; depends=[limSolve quadprog]; }; fuzzywuzzyR = derive2 { name="fuzzywuzzyR"; version="1.0.3"; sha256="1kbli1m44317m95a0r34vza9p27vd9ala05jrbrdkadninwdynal"; depends=[R6 reticulate]; }; fwi_fbp = derive2 { name="fwi.fbp"; version="1.7"; sha256="1wk9cr0kk6zkbf111bv87n7b1wwx1qrsbjxydvbjvy8bgz0nfa62"; depends=[]; }; fwsim = derive2 { name="fwsim"; version="0.3.4"; sha256="0fy87c1x5hihfcppv1pvk3b0pwl6ygqpka40x55gbpkgssdigb1l"; depends=[Rcpp]; }; - fxregime = derive2 { name="fxregime"; version="1.0-3"; sha256="15fh8yhcba2gw2xfd0yiw5ssvbgb62l6vb28bxz71ckdyv9nsahk"; depends=[car sandwich strucchange zoo]; }; - fxtract = derive2 { name="fxtract"; version="0.9.2"; sha256="0v65gdbc6xhqy1dwb6s8gp5dlz4nbsl7yr17g3pyw43znx7s5l1j"; depends=[checkmate data_table dplyr fs future_apply magrittr R6]; }; + fxregime = derive2 { name="fxregime"; version="1.0-4"; sha256="0ml1q0xp90jfng6a60pfkp6j7wajk6pz4p4wm08rfqikgsdvp0m4"; depends=[car sandwich strucchange zoo]; }; + fxtract = derive2 { name="fxtract"; version="0.9.4"; sha256="0nhgk68rbk05sz8knyy6f2rj7bnbiq8mfchl5j8jin36nvxbzls9"; depends=[checkmate data_table dplyr future_apply magrittr R6]; }; fy = derive2 { name="fy"; version="0.2.0"; sha256="0s8wqzzdd3sw5nfzap482382p252h5l0fx2bm6vi48zhg4pkgkc1"; depends=[data_table fastmatch hutils]; }; g_data = derive2 { name="g.data"; version="2.4"; sha256="14a4m0v38p3j1k1kymkxwydlgm8b73hlx9m80sg1l4aj38fvflzl"; depends=[]; }; g2f = derive2 { name="g2f"; version="0.2"; sha256="1jsmiv6v8ilpxg1k1npcgqa467hpyw7mzh5m8dp7bxar4j5npsp4"; depends=[KEGGREST minval sybil]; }; @@ -8095,53 +8375,49 @@ in with self; { gPCA = derive2 { name="gPCA"; version="1.0"; sha256="1ylb1d24dxnzpws9bbanwhyizjr3ljky2bhrph4c5yaq0zwwbrkw"; depends=[]; }; gPdtest = derive2 { name="gPdtest"; version="0.4"; sha256="00dlhnklfg2yp4hp7yjgr2nfswv22c007xq1mxdbkll62zgd94mq"; depends=[]; }; gProfileR = derive2 { name="gProfileR"; version="0.7.0"; sha256="1h1v0kgpsn04ald2izznh7fr2riwisj5hcgz4k7h3qc931rf0r4k"; depends=[plyr RCurl]; }; - gRain = derive2 { name="gRain"; version="1.3-4"; sha256="0gd04qd92mnd9j9r1ln3m19dywkbx4aq979lxm0csm7d0vhbdq99"; depends=[graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; + gRain = derive2 { name="gRain"; version="1.3-6"; sha256="0l95yvv3ig11k71xkvh0ivvkan4hvpmjsa12yg1laaaqiaqzzxnm"; depends=[graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; gRapfa = derive2 { name="gRapfa"; version="1.0"; sha256="07yzwzna9pdyzndxk6wwyl6v3gkfc7dvy1ixmdl3d38mcl1ahwyq"; depends=[igraph]; }; - gRbase = derive2 { name="gRbase"; version="1.8-6.4"; sha256="08rp6jjpcxzzad617fycc4yq7jlkclkvfa3dvb2qj4k4g1xpl2h9"; depends=[graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; + gRbase = derive2 { name="gRbase"; version="1.8-6.7"; sha256="121kfjydl96gfi3x2fr7qd83ha6lcjn7a0bwlphn1pi1nphwgbxa"; depends=[graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; gRc = derive2 { name="gRc"; version="0.4-3.2"; sha256="0f8m83wqhmsn6p0v0msdzyy9vl900nc9ddr8y78181jxcd9mqd0d"; depends=[gRbase MASS]; }; - gRim = derive2 { name="gRim"; version="0.2.1"; sha256="0j5r4pnjmyc9z0yfs8bgp0w8w4prlqwvnxmg5pm5gz09h8kkd2qq"; depends=[gRain graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; + gRim = derive2 { name="gRim"; version="0.2.5"; sha256="0m3lc42r6qd6kps3y7jz11ry4886cc87ld1s1phypna98qjy6gky"; depends=[gRain graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; gSEM = derive2 { name="gSEM"; version="0.4.3.4"; sha256="18kh41ibvfflz59gykiq7j2c6a72i8b0w8c2mcprd1nzhnyhvmhy"; depends=[DiagrammeR htmlwidgets knitr MASS]; }; gSeg = derive2 { name="gSeg"; version="0.7"; sha256="0np15vsnnksd59gzwk64fyjcawmrjq1n0rbjiw56zhsn19gkjx25"; depends=[]; }; gStream = derive2 { name="gStream"; version="0.2.0"; sha256="1f4xnbavm99yhjmaahazigps41mqlfvvl29kf4fs1yjqr531y36b"; depends=[]; }; gTests = derive2 { name="gTests"; version="0.2"; sha256="1h1sd8mrzcniq7rx7frdlxwpnsn8lifng1x99fqq703hs3znl1yq"; depends=[ade4]; }; - gWQS = derive2 { name="gWQS"; version="2.0.1"; sha256="1yl8c9v66n5zbkdcxbrzmjdf24in3gkrxgnyr2lc7pi414zb2dbg"; depends=[broom dplyr future future_apply ggplot2 ggrepel kableExtra knitr MASS nnet plotROC reshape2 rlist Rsolnp]; }; - gWQSRS = derive2 { name="gWQSRS"; version="1.1.1"; sha256="1nhh4g40fl60fnbjn92i6knj9cxd73hd4zr553cmrdr5i3gsmsl2"; depends=[aods3 broom dplyr future future_apply ggplot2 ggrepel gWQS kableExtra knitr MASS nnet plotROC reshape2 rlist Rsolnp]; }; - gWidgets = derive2 { name="gWidgets"; version="0.0-54.1"; sha256="1vwwjpi4lbgzw3fw3j9cccs9qhqa11v5hvq4hv5px373dla8pcn2"; depends=[]; }; + gWQS = derive2 { name="gWQS"; version="3.0.0"; sha256="0q7kr564jm1sv8kcp9mx2q5v7083zp25fsbndmdpkd1pw2jxhgd3"; depends=[broom cowplot dplyr future future_apply ggplot2 ggrepel kableExtra knitr MASS nnet plotROC pscl reshape2 rlist]; }; gWidgets2 = derive2 { name="gWidgets2"; version="1.0-8"; sha256="0p6lav6lrwgsw29sl8vshzgi8j2smcavx047qq31s9bsn2dcw58n"; depends=[digest]; }; gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-7"; sha256="14c933j0wj3lb5da75zxg3w3mfqh0nqk8rczbi4dnqd8sna6jks9"; depends=[gWidgets2 memoise RGtk2]; }; gWidgets2tcltk = derive2 { name="gWidgets2tcltk"; version="1.0-6"; sha256="0arh0yxx63m4df1ccrv0q3vkjncwv3ink8vkalp6ashi2932yfma"; depends=[digest gWidgets2 memoise]; }; - gWidgetsRGtk2 = derive2 { name="gWidgetsRGtk2"; version="0.0-86"; sha256="0b1xqffbzxlaaaqf1vzfl0a7b6wnnslsp8v5fbxblv7w951rsc4m"; depends=[cairoDevice gWidgets RGtk2]; }; - gWidgetstcltk = derive2 { name="gWidgetstcltk"; version="0.0-55"; sha256="06991rqh4927bal7j718bn2ziy6rws8yq682lmp5vbqhdd36afv2"; depends=[digest gWidgets]; }; gadget2 = derive2 { name="gadget2"; version="2.3.5"; sha256="1v1qg6rj3q09vkwhj5l3ijzyrgdp36fxkpv55q7l22b47b2krv17"; depends=[]; }; gafit = derive2 { name="gafit"; version="0.5.1"; sha256="160z3cv22prf7118447dla9g1gimwkfad8zdil3fg8n4l22rk51a"; depends=[]; }; - gaiah = derive2 { name="gaiah"; version="0.0.2"; sha256="1qc3crjxramyxl86dp8mcmvskixny7x6ji0jqf5dqf5r5qc7zrs9"; depends=[dplyr geosphere ggplot2 lazyeval magrittr maptools raster rgeos sp stringr tidyr]; }; + gaiah = derive2 { name="gaiah"; version="0.0.4"; sha256="1ibsbmmpagr7ix1c3bszrglqx95w44qyfy80vcq3w2dprs8vrrw6"; depends=[dplyr geosphere magrittr maptools raster rlang sp]; }; gainML = derive2 { name="gainML"; version="0.1.0"; sha256="1mqhrdjdmc2n7dxilxkqn6xq7z0qnxpigw5bbffnjvvsmdamah0n"; depends=[fields FNN]; }; gains = derive2 { name="gains"; version="1.2"; sha256="1nmrhc7qjlyzn04r1qyjdws5fin3idmi789kbxzilax12ya8xr7k"; depends=[]; }; galts = derive2 { name="galts"; version="1.3.1"; sha256="0jg0yng1kc6s0qdhq8ps38dsxdcrgdcn8dl2dlclw6rcbknb6h4k"; depends=[DEoptim genalg]; }; - gam = derive2 { name="gam"; version="1.16.1"; sha256="1fbldshnfy37bpqprazwp1rkyh9f67mr2krnxpl4688mqq143l40"; depends=[foreach]; }; + gam = derive2 { name="gam"; version="1.20"; sha256="1zhy2fp7pxac8xp3z3hndhprj4s5gx3305b627vc78bal1ml3swi"; depends=[foreach]; }; gamCopula = derive2 { name="gamCopula"; version="0.0-7"; sha256="0zi9g2vxkn1hxc2qyyr1x8p1f9w7fc1j5dmm2mmm333gixkkz9nb"; depends=[copula doParallel foreach gsl igraph MASS mgcv numDeriv VineCopula]; }; gamRR = derive2 { name="gamRR"; version="0.7.0"; sha256="0zn8921a4i1lz5wpdfbd72pqb25r12abyqw7y2w53kfhdzs57f3l"; depends=[boot mgcv]; }; gama = derive2 { name="gama"; version="1.0.3"; sha256="1k79m01r3y9am62414947zfwb1w1gh0nn48najivbjyk9i2avn9r"; depends=[ArgumentCheck cluster clusterCrit GA ggplot2 NbClust Rfast]; }; gamair = derive2 { name="gamair"; version="1.0-2"; sha256="1cjrd576l9md1jb1fc1y6iay5y49i0d8by024qsc7yik6f6mdl13"; depends=[]; }; - gambin = derive2 { name="gambin"; version="2.4.3"; sha256="0rb4yh01kk2nbw9dl9vhsd9c7c1fi3pq5f0h7lmngi8zlf80rk69"; depends=[doParallel foreach gtools]; }; + gambin = derive2 { name="gambin"; version="2.4.4"; sha256="1kxxc17hva0r9wibh14w1r7g67q1nj71vrpdx4vkbsjz0lj67nzm"; depends=[doParallel foreach gtools]; }; gamboostLSS = derive2 { name="gamboostLSS"; version="2.0-1.1"; sha256="1zrmn2r9814q37nmc29p9lyvpgrz6q7pwby5h37ldsxzzwxqz1ig"; depends=[mboost stabs]; }; gamboostMSM = derive2 { name="gamboostMSM"; version="1.1.87"; sha256="0if0x92lch57ksll8d5i3jzk0kh40593b20c17g3hvc33920c7r0"; depends=[mboost]; }; gameofthrones = derive2 { name="gameofthrones"; version="1.0.2"; sha256="10ns4yl1s8adlf334gl8yararj1fpxbg3gy7h69s554m4h878awk"; depends=[ggplot2 gridExtra MASS]; }; games = derive2 { name="games"; version="1.1.2"; sha256="01hbbr2hsxi5j9axpdl0jihpd55pa9hacjxmab8p7cixk3xqqqbf"; depends=[Formula MASS maxLik stringr]; }; gamesGA = derive2 { name="gamesGA"; version="1.1.3.7"; sha256="0km0z2haqgykl01xkzsbkpwibavgqfjygx7cg08ni68gw501689l"; depends=[shiny]; }; - gamlr = derive2 { name="gamlr"; version="1.13-5"; sha256="0fc27b6qcm01drb7pb14wri2hlb464jig3x7sb8njwrxcqqia14n"; depends=[Matrix]; }; - gamlss = derive2 { name="gamlss"; version="5.1-6"; sha256="16b7ick1khvldbvfmmpw9cjs1vznnrisvifq7717fxzd8c9s5jdr"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; + gamlr = derive2 { name="gamlr"; version="1.13-6"; sha256="1b2vpqwr63nh3slpm3ha8w2mxnzhg5yv8f5afja58k9db77kciad"; depends=[Matrix]; }; + gamlss = derive2 { name="gamlss"; version="5.1-7"; sha256="0ywqwsp4k6jgnicp1gdsglji61l5cnackl52700v8kmkk83bq4c8"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; gamlss_add = derive2 { name="gamlss.add"; version="5.1-6"; sha256="0g80bn0nszs2nmka6dypyvqnsgxp7mzhf5nd82n5x4jm3ca3dbdj"; depends=[gamlss gamlss_dist mgcv nnet rpart]; }; gamlss_cens = derive2 { name="gamlss.cens"; version="5.0-1"; sha256="1s83dgifidvc6cbrqirwlvwfzg08mlhmxxiqkbmnsy09i5j9fzd3"; depends=[gamlss gamlss_dist survival]; }; gamlss_countKinf = derive2 { name="gamlss.countKinf"; version="3.5.1"; sha256="1xalp909gxxhyhh4chlr1ssyfhydhw1w3szzbynajji98576zaqv"; depends=[gamlss gamlss_dist]; }; gamlss_data = derive2 { name="gamlss.data"; version="5.1-4"; sha256="1dgfspbmps6ipzcmw681wjdp320nm50dwsxafgrcwxndqgc7fdqd"; depends=[]; }; gamlss_demo = derive2 { name="gamlss.demo"; version="4.3-3"; sha256="01p6abppwbnh2a2ks1g08z4iwq2fxf125y9s4qzssybsn76a3gf3"; depends=[gamlss_dist gamlss_tr rpanel]; }; - gamlss_dist = derive2 { name="gamlss.dist"; version="5.1-6"; sha256="1p904x0b07z4amaqdn2xhs7qzbq8lisr6lqc844s3pkxzmny7w1z"; depends=[MASS]; }; + gamlss_dist = derive2 { name="gamlss.dist"; version="5.1-7"; sha256="0nzgq3rnziy0i2zxn88hqy3pakpyin2m2csk9j3zg39si66c6wcq"; depends=[MASS]; }; gamlss_inf = derive2 { name="gamlss.inf"; version="1.0-1"; sha256="0m091zxjm5wvhm6mzbpzkr275n3qnlb3v4099k0a1jymahk4w7vr"; depends=[gamlss gamlss_dist]; }; gamlss_mx = derive2 { name="gamlss.mx"; version="4.3-5"; sha256="1jfs3ib2imwgazf8v23fa12iaflv0pm944bkqklx8qcljxp1lcs7"; depends=[gamlss gamlss_dist nnet]; }; gamlss_nl = derive2 { name="gamlss.nl"; version="4.1-0"; sha256="083l5lsb0csxcp4vffvdv2nr7jk3s2gkcavx66m8inzw16j7xilz"; depends=[gamlss survival]; }; gamlss_spatial = derive2 { name="gamlss.spatial"; version="2.0.0"; sha256="1pgmlc6i7p5mjb1pc7b861yjl2gwr37bbzj3j2dl0qzybrs742mx"; depends=[gamlss gamlss_add gamlss_dist mgcv spam]; }; - gamlss_tr = derive2 { name="gamlss.tr"; version="5.1-0"; sha256="1px9lhwad13s544g4ba8m7nxxd425jyakh6x1p4byxl8bn9w9qgr"; depends=[gamlss gamlss_dist]; }; + gamlss_tr = derive2 { name="gamlss.tr"; version="5.1-7"; sha256="0drimqfy22v3lbb6wclia9dkij2r1r4syz9i74fhn07qxay7b6cg"; depends=[gamlss gamlss_dist]; }; gamlss_util = derive2 { name="gamlss.util"; version="4.3-4"; sha256="0p8lnwrn7cx97qnxls1x532f3ywszdyib2qiwx5qc7sam59h9c8j"; depends=[gamlss gamlss_dist zoo]; }; gamlssbssn = derive2 { name="gamlssbssn"; version="0.1.0"; sha256="1l8d4qwmq9dklm9imb3cvlncwa6jygf8kg2j1599h1nfhyyhj2vv"; depends=[gamlss gamlss_dist MASS]; }; gamm4 = derive2 { name="gamm4"; version="0.2-6"; sha256="128c725y9s07c1m9cvd9hgi9hldrymcs5divd8pw7bdjh9jvdiap"; depends=[lme4 Matrix mgcv]; }; @@ -8154,47 +8430,51 @@ in with self; { gap_datasets = derive2 { name="gap.datasets"; version="0.0.4"; sha256="1zlxm3nh1b1mqb94fq2b7sc7v99m9ywz7bz9lz5bhwblk5fzmjii"; depends=[]; }; gapfill = derive2 { name="gapfill"; version="0.9.6"; sha256="0384v7capab7dbyvz6b2jvnh840z6ab3857my0h3cgsys3lhn3c5"; depends=[fields foreach ggplot2 quantreg Rcpp]; }; gapminder = derive2 { name="gapminder"; version="0.3.0"; sha256="067cra1ca4ngwjx8d1y9pyzwcpsfi1wcal0glzyy6ghd1k6jflpv"; depends=[tibble]; }; - garchx = derive2 { name="garchx"; version="1.0"; sha256="1k8f6251hpj38rllw10w97r9j4asqg111kwcpnxh4rilbhjcra36"; depends=[zoo]; }; - gargle = derive2 { name="gargle"; version="0.4.0"; sha256="08zhfk2sl342w35i5n2c93ayypg3z0kbl0020l3y9adqka1vazgx"; depends=[fs glue httr jsonlite rlang withr]; }; + garchx = derive2 { name="garchx"; version="1.1"; sha256="1pw8igjimralggkcfynnp4fcc0wqb5rhkk7x3ymj9ysgif8fnfgj"; depends=[zoo]; }; + gargle = derive2 { name="gargle"; version="0.5.0"; sha256="1fykmiv3x8c9ai31r9wr7qcca51h6kqn9cgwbxvxfj15fhwskh4n"; depends=[fs glue httr jsonlite rlang withr]; }; + garma = derive2 { name="garma"; version="0.9.2"; sha256="0mln1v0qz588jv8k0v3jy0b5lw3pz7mysdcnmkihqs7zd1f7vkgs"; depends=[assertthat FKF forecast ggplot2 lubridate nloptr pracma Rdpack Rsolnp signal zoo]; }; garray = derive2 { name="garray"; version="1.1.2"; sha256="0s2dgi556x9jnhafvzz4qkxdbq9dm12gsvsqd2g9iy3468fx9flq"; depends=[]; }; gaselect = derive2 { name="gaselect"; version="1.0.9"; sha256="089gyllcmq5rgf5yffclifc7rc8rmq4wk1dhznigxkij4zap67hx"; depends=[Rcpp RcppArmadillo]; }; gasfluxes = derive2 { name="gasfluxes"; version="0.4-4"; sha256="0gi0zk0h5rw75n6znada0cwa9qzy8higsiiqwgdm3q827j1x8iva"; depends=[AICcmodavg data_table MASS sfsmisc]; }; - gastempt = derive2 { name="gastempt"; version="0.4.4"; sha256="16sgjysc9x6l07jdnw515jzvc8nf237a1a3wmcwc5khyacg29lr4"; depends=[assertthat BH dplyr ggplot2 nlme Rcpp RcppEigen rstan rstantools shiny StanHeaders stringr tibble]; }; + gasper = derive2 { name="gasper"; version="1.0.1"; sha256="1dyrf1i1algzaafjs374xi3j787id6nqx7f0ha2wmisd2ax92jw0"; depends=[ggplot2 Rcpp RcppArmadillo rwavelet scatterplot3d]; }; + gastempt = derive2 { name="gastempt"; version="0.5.1"; sha256="1ycyk1a643vd4cdxinjvb194mxjp5p1hwmlda6x8qy0yhky0ibhw"; depends=[assertthat BH dplyr ggplot2 nlme Rcpp RcppEigen rstan shiny StanHeaders stringr tibble]; }; gaston = derive2 { name="gaston"; version="1.5.6"; sha256="1bx6iqfjb9lf3vn0z7v8wjv9m7issvqsnymm4qsgl3622s6qz6rg"; depends=[Rcpp RcppEigen RcppParallel]; }; gatepoints = derive2 { name="gatepoints"; version="0.1.3"; sha256="02qxxf4a6rl3l0jdgqxmzxfnqd9lh5i0q2knaxxsiz0nd74c1jg5"; depends=[]; }; gaussDiff = derive2 { name="gaussDiff"; version="1.1"; sha256="0fqjdxp2ibbami75ba16d02dz4rz5sk8mni45di9anydx44g9d45"; depends=[]; }; - gausscov = derive2 { name="gausscov"; version="0.0.3"; sha256="012fjyx2gfkab1pfpwrpah81v21rdvj0adnihy150c7y9r773bzz"; depends=[]; }; + gausscov = derive2 { name="gausscov"; version="0.0.4"; sha256="1fq2r7ibhnq26xa3hqyshr0m85a7gzkfagi6lsr36di26ixipwh8"; depends=[]; }; gaussfacts = derive2 { name="gaussfacts"; version="0.0.2"; sha256="095x7k7m7sy1gqkbm6wiqn26252dclz62sbnkv6cjvmbdxajl7m9"; depends=[]; }; gaussquad = derive2 { name="gaussquad"; version="1.0-2"; sha256="0bcvkssmwwngcd4cnv924n9h3c8z1w3x9c9bkwn5jbz9zyv1lfms"; depends=[orthopolynom polynom]; }; gazepath = derive2 { name="gazepath"; version="1.3"; sha256="1sv0vdwzmvpnj2k8lphnf4y12fi5md0j2725fjkv1n7a3dkd6faa"; depends=[jpeg scales shiny sp zoo]; }; gb = derive2 { name="gb"; version="2.3.3"; sha256="0gkdkbwr168vi7lgccla49l43rkmjcfrwlqdr65mg5syzcxrh7nh"; depends=[boot KernSmooth]; }; gbRd = derive2 { name="gbRd"; version="0.4-11"; sha256="06x97rw5i6v6cgjxkfhxnw4dn7lghn5q6ra7ri5ag1x9dkfzcl82"; depends=[]; }; - gbfs = derive2 { name="gbfs"; version="1.3.2"; sha256="1sgs026bhap2kyla4s7dq9vgxk0daxs3ggixfhin1jqvriqx2b18"; depends=[curl dplyr httr jsonlite lubridate purrr readr stringr]; }; - gbm = derive2 { name="gbm"; version="2.1.5"; sha256="0vs6ljaqhwwpgr8wlbhmm4v147rd82kl16rpaijqiylxcc8dxyq6"; depends=[gridExtra lattice survival]; }; + gbfs = derive2 { name="gbfs"; version="1.3.3"; sha256="14xpsbk9lcmpwf5dmwkcjdd07y2c7jb1m9c031scrzhw4p4gd71h"; depends=[curl dplyr httr jsonlite lubridate purrr readr stringr]; }; + gbm = derive2 { name="gbm"; version="2.1.8"; sha256="1h9f4ww9yc3nsvghgr2q7jjrlz29ibabxjbax1sk5wmqh2wy6pbx"; depends=[lattice survival]; }; gbm2sas = derive2 { name="gbm2sas"; version="2.1"; sha256="0ssjlv849vssmncn01ccpp2myqib5f3g88g0d4rqma2z0ivdpk23"; depends=[gbm]; }; gbp = derive2 { name="gbp"; version="0.1.0.4"; sha256="0awg724gsfwlb0fjcvw0450qdsk4m8x8is16pj5c8fx6nc8rn8bv"; depends=[data_table magrittr Rcpp RcppArmadillo rgl]; }; gbs2ploidy = derive2 { name="gbs2ploidy"; version="1.0"; sha256="0gdjfqs9ccyaw7vi22wbyc742n1badr5ypr08g6rvi8ka5lmx836"; depends=[MASS rjags]; }; gbts = derive2 { name="gbts"; version="1.2.0"; sha256="1v8x4dnja8va28rjznyqa6js9wazndijasb95lfj2qwhxhgf5h65"; depends=[doParallel doRNG earth foreach gbm]; }; gbutils = derive2 { name="gbutils"; version="0.4-0"; sha256="01ka10k599c8q7l55jzkrvqlxhzdanc4xnmsh6js5ji5yr7v385f"; depends=[Rdpack]; }; gcForest = derive2 { name="gcForest"; version="0.2.7"; sha256="10fjha76sgnrkhwjm0rm4hrbn0643p9dsyb5ahw43x8m5kmw2ydq"; depends=[cli crayon pkgdown reticulate]; }; - gcKrig = derive2 { name="gcKrig"; version="1.1.3"; sha256="18rnmvq7kgjysic24hwc39ay4yjnhn7zs6pg05q8hz7wsq8xlvjx"; depends=[Rcpp RcppArmadillo]; }; + gcKrig = derive2 { name="gcKrig"; version="1.1.4"; sha256="1dis2afkwdfziab8a8y8h4r692kb2pkmq8lbpgb6z4ygvhgr38kj"; depends=[Rcpp RcppArmadillo]; }; gcbd = derive2 { name="gcbd"; version="0.2.6"; sha256="1dvnly0aljv2c4x7sn3q55ncvfdfjfgp7w0k2900p77h4w8nixia"; depends=[DBI lattice Matrix plyr reshape RSQLite]; }; gcdnet = derive2 { name="gcdnet"; version="1.0.5"; sha256="159dl8v1n7s9wnfrjb6f0b3ssblkqgbfzs15vjxhc8xkz0jp9z1c"; depends=[Matrix]; }; gcerisk = derive2 { name="gcerisk"; version="19.05.24"; sha256="1dn3x9afb6lwys5adi621s6357s66lsif5zv64ilxmckmy2j71zl"; depends=[cmprsk ggplot2 survival]; }; gcite = derive2 { name="gcite"; version="0.10.1"; sha256="0ljgzzl4yy1in5iz42iqkrsq6da4qx838anwdlvbdy96dyafl4ad"; depends=[data_table httr pbapply rvest tm wordcloud xml2]; }; + gclm = derive2 { name="gclm"; version="0.0.1"; sha256="0b1nr8k8m48x78m6fkga11ikkcxyjsjpvqcd1lp6n9n4hv7akmfp"; depends=[]; }; gclus = derive2 { name="gclus"; version="1.3.2"; sha256="1cz0g0i972955hhaji30rx8448x7f3as7z1sww9i5h86ybgirilw"; depends=[cluster]; }; gcmr = derive2 { name="gcmr"; version="1.0.2"; sha256="0mh542na2byb4aha548lfkzllfnk4rmzcm23jm6642pndvxpnfmj"; depends=[betareg car Formula lmtest nlme sandwich sp]; }; gconcord = derive2 { name="gconcord"; version="0.41"; sha256="1n3pfwk6vip19q1zhbz1n164f9vi7mig8pcd07c4wxnm5ir9dagy"; depends=[]; }; gcookbook = derive2 { name="gcookbook"; version="2.0"; sha256="11g1q187l4j31b6cdzdx5z3s14z3s09l7ynl36pzzn9j19l8cmrc"; depends=[]; }; - gdalUtilities = derive2 { name="gdalUtilities"; version="1.0.0"; sha256="1z452lh1n65g78dqynnwq3rcrmm7g4jz7qr25px7qav0zi6944mf"; depends=[raster sf]; }; + gdalUtilities = derive2 { name="gdalUtilities"; version="1.1.1"; sha256="11i97ahbqggd5zgr4w57ys3xmwhymbbfmd2w2yrg4riwhsbpxwyy"; depends=[raster sf]; }; gdalUtils = derive2 { name="gdalUtils"; version="2.0.3.2"; sha256="0krapdy50nd5dvcdflz39dzxpig3zklng3hgxavqg2nvwazalvsc"; depends=[foreach R_utils raster rgdal sp]; }; - gdalcubes = derive2 { name="gdalcubes"; version="0.2.4"; sha256="1xsii3aj11q96xw1zkdri5crynd1g8d499qa74p2c75wqp296mrh"; depends=[jsonlite ncdf4 Rcpp RcppProgress]; }; + gdalcubes = derive2 { name="gdalcubes"; version="0.3.0"; sha256="0qwn6hdd2f84n10vgawgfv4lkpb91ywqmzi2b945r3nbfh8d5pbl"; depends=[jsonlite ncdf4 Rcpp RcppProgress]; }; gdata = derive2 { name="gdata"; version="2.18.0"; sha256="0zwdj7lscgxr8r62ii8hbdh4mb7sa9w4f5nv32zzrxdvymcpya2b"; depends=[gtools]; }; + gdiff = derive2 { name="gdiff"; version="0.2-1"; sha256="11p3xx0gmqfjyl08znmnganhif0zi1c5kbbv9qkqayjbi3j79z86"; depends=[magick pdftools]; }; gdimap = derive2 { name="gdimap"; version="0.1-9"; sha256="0ksbpcy739bvsiwis0pzd03zb4cvbd8d5wdf8whfn9k6mkj4x9rs"; depends=[abind colorspace geometry gridExtra gsl movMF oro_nifti rgl]; }; - gdistance = derive2 { name="gdistance"; version="1.3-1"; sha256="04v86kdpag3dvp4zm4ia9y0g9nxa39ka0nmqyw7rkhkmzfs7m6hf"; depends=[igraph Matrix raster sp]; }; + gdistance = derive2 { name="gdistance"; version="1.3-6"; sha256="093a29yb544gxldwxgkyfc9bhmz3by0pknnj1c666i6gz2rbxjic"; depends=[igraph Matrix raster sp]; }; gdm = derive2 { name="gdm"; version="1.4.2"; sha256="1q2bmqrxlac72jdmaldf4m6cwv60aaxxqws518dcn83bs788mbcm"; depends=[doParallel foreach raster Rcpp reshape2 vegan]; }; gdmp = derive2 { name="gdmp"; version="0.2.0"; sha256="0fy8x9l6swrb78apwq9d9msz2y8dkfd2fkyp1pkmzxwdb85lmcdm"; depends=[]; }; - gdns = derive2 { name="gdns"; version="0.3.1"; sha256="1vydl7jacldidzx1hhqang9fw8zar8wy4cgdmr9pbw22ffw2qq7s"; depends=[httr jsonlite stringi]; }; + gdns = derive2 { name="gdns"; version="0.5.0"; sha256="1bicimkxsyfg9yqaikapwlv8x9xdvsb00fqnfka07i6b63109sxh"; depends=[httr jsonlite magrittr stringi tinytest]; }; gdpc = derive2 { name="gdpc"; version="1.1.1"; sha256="1wdfmsc8g7paj3rj75wcvqcjw92bkgc57nz1wc90y67gh1xvxs1i"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; gds = derive2 { name="gds"; version="0.1.0"; sha256="0kc3l93640x8d6g3pa9gbr7ci5hmryg9i1nqpasgnvb6ixv6azbm"; depends=[]; }; gdtools = derive2 { name="gdtools"; version="0.2.2"; sha256="08njzin0c6biw62j5w30r9j85vr1m2cg4hmv5d76nym860yrlqjf"; depends=[Rcpp systemfonts]; }; @@ -8208,14 +8488,16 @@ in with self; { geesmv = derive2 { name="geesmv"; version="1.3"; sha256="0gm953z8q5cc1adl3d6vj5djg2inc880zfcdl5gd56fnb5gl6h1w"; depends=[gee MASS matrixcalc nlme]; }; geex = derive2 { name="geex"; version="1.0.12"; sha256="0zqfd416wl6inr423xzxrnc0as0yrxfqy7fdjyc39i60kghfqyh3"; depends=[lme4 Matrix numDeriv rootSolve]; }; geigen = derive2 { name="geigen"; version="2.3"; sha256="0blg4w9wjprbax8z6md3285v12ajcjmcrpca52l3kd5qmxlvizy7"; depends=[]; }; - geiger = derive2 { name="geiger"; version="2.0.6.4"; sha256="0r5g50lpq2cawh3cirj8g954wy129s6a4wjw78blpcc6kdvi5p4d"; depends=[ape coda colorspace deSolve digest MASS mvtnorm ncbit Rcpp subplex]; }; + geiger = derive2 { name="geiger"; version="2.0.7"; sha256="15lmgr1slak9sh35gka5wa4fszywdl9d1rqkbb2lpvfp99n7606j"; depends=[ape coda colorspace deSolve digest MASS mvtnorm ncbit phytools Rcpp subplex]; }; gelnet = derive2 { name="gelnet"; version="1.2.1"; sha256="10ygdfz9f5xhahlqb2divwvaljhiz8jhsd12wvq0qalx0v1h5j0p"; depends=[]; }; - gemlog = derive2 { name="gemlog"; version="0.36"; sha256="06av0gg9b96fdfq275wany036jxzrym3g5klbjmj1cjvl1kyvjim"; depends=[signal]; }; + gemlog = derive2 { name="gemlog"; version="0.41"; sha256="16pdhpx21avxjrawj7i47dxzz2wfhabzz5x3nln2pwaz5b147syz"; depends=[signal]; }; gemma2 = derive2 { name="gemma2"; version="0.1.1"; sha256="1kbjb5cjgrbdf695nz916w40a78zy5xjmr99l835iy27k3i2p61i"; depends=[Matrix readr]; }; gems = derive2 { name="gems"; version="1.1.1"; sha256="174mjnpldb0rwjvwdgpcg1acm526gs0pjf9gi5mn9d3x9yz4r5jx"; depends=[data_table MASS msm plyr]; }; - gemtc = derive2 { name="gemtc"; version="0.8-4"; sha256="1vg71vskvpky84371vq9i2x1i8axd7dcsbbv4zac9h2xlf63l39j"; depends=[coda igraph meta plyr Rglpk rjags truncnorm]; }; + gemtc = derive2 { name="gemtc"; version="0.8-7"; sha256="1lwafhn99ndvs9skjwn8j910fjphl6pbhmbw1ni37aikgfnsdzpl"; depends=[coda forcats igraph meta plyr Rglpk rjags truncnorm]; }; gen2stage = derive2 { name="gen2stage"; version="1.0"; sha256="16xbzgkjskzm1wik3dznvwhqddrpmcgsgd372n4a67rbb46jgx6r"; depends=[clinfun]; }; + gen3sis = derive2 { name="gen3sis"; version="1.0"; sha256="0sfdk8sr12br4r5jw4dx5biv3ss3bgnwlin9a34zx007d0dk1b03"; depends=[BH gdistance Matrix raster Rcpp sp stringr]; }; gen5helper = derive2 { name="gen5helper"; version="1.0.1"; sha256="0z7hisn57md18vcfb6f44hy6zzp9dirrjyxi4x1id3mqa3mligb6"; depends=[dplyr ggplot2 minpack_lm naturalsort plyr pracma rlang tidyr]; }; + genBaRcode = derive2 { name="genBaRcode"; version="1.2.3"; sha256="0vhbf0hm9b414afwvdg5w4c1x8skz3idmz9hs45hqixabkqkkfpa"; depends=[ape Biostrings dplyr futile_logger future future_apply ggnetwork ggplot2 ggraph ggseqlogo ggtree igraph network phangorn RColorBrewer reshape2 S4Vectors shiny ShortRead stringdist VennDiagram visNetwork]; }; genBart = derive2 { name="genBart"; version="1.0.1"; sha256="12z5vj41npwawz954zqkjfmg9inh063ilh7m82pn73asrxif0ay3"; depends=[clValid data_table fastcluster ggplot2 gtools limma NMF pca3d psych qusage RColorBrewer reshape2 rmarkdown scales shiny shinydashboard shinyjs statmod stringr VennDiagram]; }; genSurv = derive2 { name="genSurv"; version="1.0.3"; sha256="0k5rfpq603szjb76gxffvsbqcav8182h8zwvg4kar68k72yfw1xs"; depends=[]; }; genTS = derive2 { name="genTS"; version="0.1.3"; sha256="1ky8h8yzqfkb91ny9z08gr7irzvjqr1b42k89ahcrmk458hjwgqr"; depends=[shiny]; }; @@ -8223,7 +8505,7 @@ in with self; { genasis = derive2 { name="genasis"; version="1.0"; sha256="1r0733cc2hss3f8dp19s1ji55yp72mds7p3x1zvvpiks2r7w712p"; depends=[fitdistrplus Kendall]; }; gencve = derive2 { name="gencve"; version="0.3"; sha256="00wbmaffm7mbfv3zl6mb24w1df1a8p24girwdh3a522lw3045iwf"; depends=[C50 class e1071 glmnet lars MASS nnet plus randomForest rpart]; }; gendata = derive2 { name="gendata"; version="1.1"; sha256="1r5bhmfblhk6d31v0byhp4a0pmpri6vk697zmmx9b0hvhda7mllf"; depends=[]; }; - gender = derive2 { name="gender"; version="0.5.3"; sha256="1r4w38av9qhmxbmripyn7zkk7r49qwvk8426y6g241dvilj7mxr0"; depends=[dplyr httr jsonlite]; }; + gender = derive2 { name="gender"; version="0.5.4"; sha256="0z8in0hgzkqngv2x3630lbbdw9in1qgirr01kag35bdqrdffh3d4"; depends=[dplyr httr jsonlite]; }; genderBR = derive2 { name="genderBR"; version="1.1.0"; sha256="0j5wsbv797wc48lc65yhaqhpwqyr662460vj59x7r9p7d7m1ncd0"; depends=[dplyr httr jsonlite]; }; gendist = derive2 { name="gendist"; version="2.0"; sha256="0rs0sn1sb6j3pk2xncix04a093awlm2nw70g0rjhr7dlzmigspgb"; depends=[]; }; geneHummus = derive2 { name="geneHummus"; version="1.0.11"; sha256="1m6yyjsvmn3w87cw4da8js5vi74k5y739gxdx1yscx1n50bc3m34"; depends=[curl dplyr httr rentrez stringr]; }; @@ -8240,11 +8522,12 @@ in with self; { genero = derive2 { name="genero"; version="0.1.0"; sha256="0akwwy5xbh7s40v8dr1zr7jfglv0iyh4zn0sb0rnz4r57qr6nh8w"; depends=[]; }; genesysr = derive2 { name="genesysr"; version="1.0.0"; sha256="05jp8z7313r5wi9a5yw7fh198l7nd2ywzwg4f23yp4kfrkkgawn5"; depends=[dplyr httr jsonlite]; }; genetics = derive2 { name="genetics"; version="1.3.8.1.2"; sha256="1v0ylnia6c44v356dsmnkx6054vcxazpzsrdh3yph5ch5vg6gjrh"; depends=[combinat gdata gtools MASS mvtnorm]; }; - genie = derive2 { name="genie"; version="1.0.4"; sha256="0ymrn42ik0rfildmyq4z0gsd7injda0dsjgx69nqb6hq0x8s5hqa"; depends=[Rcpp]; }; + genie = derive2 { name="genie"; version="1.0.5"; sha256="07w6rf4a3d34j7dwz9zcxshg2sk1cd5v59xs3jxph17c9gga0nlq"; depends=[genieclust Rcpp]; }; + genieclust = derive2 { name="genieclust"; version="0.9.4"; sha256="1fghav2b35g3w9ip70hjjjclgv4ai28yh8ddgjqq23p0c5aqa25j"; depends=[Rcpp]; }; genio = derive2 { name="genio"; version="1.0.12"; sha256="15v9hdnb1jknbvflvgyyhcx0cqjn3v9zl66mswk59j56qm58bkr9"; depends=[Rcpp readr tibble]; }; - genius = derive2 { name="genius"; version="2.2.0"; sha256="0062g7wyclrbaljwib57s95x5wamc01fr3hgwjjzgv850vbbjqlv"; depends=[dplyr purrr readr reshape2 rvest stringr tibble tidyr tidytext]; }; + genius = derive2 { name="genius"; version="2.2.2"; sha256="1nan192mbnp9n9j3ccqrg6qzz5rmxj537v031kn1802yiakz79m9"; depends=[dplyr purrr readr reshape2 rlang rvest stringr tibble tidyr tidytext]; }; geniusr = derive2 { name="geniusr"; version="1.2.0"; sha256="04h0a61ngs0cmjf23imx76bm82dzkp4q4j31h3xlic05dx2lvyan"; depends=[curl dplyr httr purrr rvest stringr tibble xml2]; }; - genlasso = derive2 { name="genlasso"; version="1.4"; sha256="01p1cs0h6gwr6f18aaqirgd8yxrhyamakc763y9dm6mndrba2x0g"; depends=[igraph MASS Matrix]; }; + genlasso = derive2 { name="genlasso"; version="1.5"; sha256="07f0gqvngiyd3x01qxbqz7xrz10ck1cbypp51ldg8lg8ln1zw76y"; depends=[igraph Matrix]; }; genlogis = derive2 { name="genlogis"; version="1.0.0"; sha256="01av5invhviii7adqihh10ib47rjzwfsqdgw3lfg1c72kzrqywgr"; depends=[distr doParallel foreach ggplot2 manipulate]; }; geno2proteo = derive2 { name="geno2proteo"; version="0.0.3"; sha256="1q054ai42f5gmrj791abj02f663zs7ymdh3pfs3b2lq6i4w9s2fb"; depends=[BiocGenerics GenomicRanges IRanges R_utils RUnit S4Vectors]; }; genoPlotR = derive2 { name="genoPlotR"; version="0.8.9"; sha256="07901qv2lzzflda0p8qxmla6syvq2c9y230xipvn1i0p4izdqk5s"; depends=[ade4]; }; @@ -8254,13 +8537,13 @@ in with self; { genomic_autocorr = derive2 { name="genomic.autocorr"; version="1.0-1"; sha256="1lidrjz1flxw4jvhqdi8y813m7ss4kkvm7bxsdpz60dxxw3204gm"; depends=[data_table magrittr reshape]; }; genomicper = derive2 { name="genomicper"; version="1.6"; sha256="12msl6syw5a3dvxg9fr1yprcpb9qwn8v2dvkpxgagal11p9q1kx7"; depends=[DBI]; }; genotypeR = derive2 { name="genotypeR"; version="0.0.1.8"; sha256="1kwzjn6hrnfizs44cz4a8qa4mdhdzqssc4axx0s6vngmkmsrffig"; depends=[colorspace doBy plyr reshape2 zoo]; }; - genpathmox = derive2 { name="genpathmox"; version="0.3"; sha256="0r1iqwm5jh93lbh87ks5qm4qqsp98928vg7qmv1pkahdlvl3ramw"; depends=[diagram mice plspm quantreg]; }; + genpathmox = derive2 { name="genpathmox"; version="0.4"; sha256="1d5mwci52qdnkfg9pxccc5fijzpc0q80zw76sjdfsf9lixxhwk4h"; depends=[diagram mice quantreg]; }; genpwr = derive2 { name="genpwr"; version="1.0.2"; sha256="0k05l0d2qk2g3ic6f46xkhgy8ziwalrfx4nc0qi2k7i44kz720mg"; depends=[ggplot2 MASS nleqslv]; }; genridge = derive2 { name="genridge"; version="0.6.7"; sha256="07mdkkq4j8i5x8d4yfsp2rfpf7gkcgdcsw9b2ng5f7gdnblrw0dr"; depends=[car]; }; + genscore = derive2 { name="genscore"; version="1.0.2"; sha256="0i1wg65cpyc7x1h8dbq0i6q8979lw15zhmn7zn1r8gj3nxl7my0b"; depends=[mvtnorm Rdpack stringr tmvtnorm]; }; gensemble = derive2 { name="gensemble"; version="1.0.1"; sha256="03ql1qxrxixr70hs9mwiqw92qyrg9pj4046pb42g435yncw321ad"; depends=[]; }; gensphere = derive2 { name="gensphere"; version="1.1"; sha256="1xzli40fw94n89cv2qyb321csad1w9zidqc226wlifl2m44cw6f7"; depends=[geometry mvmesh rgl SimplicialCubature SphericalCubature]; }; gensvm = derive2 { name="gensvm"; version="0.1.3"; sha256="1r9vd6h3divmjd73p3541mngv452v1dkxc41q7mbkd5qhy34km74"; depends=[]; }; - genvar = derive2 { name="genvar"; version="0.0.2.0"; sha256="1agkyq84kl64q77n5sml44ind16c1zf16ivr6c7n08746gra3mbc"; depends=[clubSandwich foreign Formula plm readstata13 rlang sandwich]; }; geoBayes = derive2 { name="geoBayes"; version="0.6.3"; sha256="153a7kp73wxm5hzzq038p3mnykhakv0c9qa8fpbjijccmbi89970"; depends=[coda optimr sp]; }; geoGAM = derive2 { name="geoGAM"; version="0.1-2"; sha256="0q09pk2npn4hjymklwfrhz2ybmjpcb6kvqkpn9l3a6cdjgk6bkmj"; depends=[grpreg MASS mboost mgcv]; }; geoR = derive2 { name="geoR"; version="1.8-1"; sha256="1lvgkpvv4a05lsb1dgphpv733lxbpcj7p2bj1yjjbfch8n04f1lr"; depends=[MASS RandomFields sp splancs]; }; @@ -8269,77 +8552,85 @@ in with self; { geoaxe = derive2 { name="geoaxe"; version="0.1.0"; sha256="043y7kb24hp66j7pnpqsdixvdmppwp72y8i4f8q7xrkhaqlfb93v"; depends=[jsonlite rgeos sp]; }; geobr = derive2 { name="geobr"; version="1.3"; sha256="0xgjlpxpdkh46gv4pz91hq1q6hxz1ikbfqh5g3xrzwf58hw6mz7h"; depends=[httr readr sf]; }; geocacheR = derive2 { name="geocacheR"; version="0.1.0"; sha256="04ckxmird6n179xvsx50cjdz046igjxxqdnz5pfxi8pdklnky20c"; depends=[dplyr magrittr stringr threewords tibble]; }; + geodaData = derive2 { name="geodaData"; version="0.1.0"; sha256="003m5wff0q4fdlg64qispmhj2aw83isxg3ijxwkwhvi33bpwpq4z"; depends=[]; }; geodetector = derive2 { name="geodetector"; version="1.0-4"; sha256="00zyx68jjl4mldah8mxfvwvv5yfkd4f1s2rlx6fsw6h8y2cwzj3l"; depends=[maptools rgdal rgeos sp]; }; - geodist = derive2 { name="geodist"; version="0.0.3"; sha256="1qxrbpx265l5vwvicspbqzr2s0k3k6lsrzvxnbhnds95jgq9yw4q"; depends=[]; }; + geodist = derive2 { name="geodist"; version="0.0.4"; sha256="1hgc5dhb8knharx1v09rw1cppkvc1sc0w8wjf4d17b6nw3b3j9gq"; depends=[]; }; geodiv = derive2 { name="geodiv"; version="0.1.1"; sha256="0vww273947isk9ds6hjg9k47k8kbsbgyjap6iqgqyd9bl9437yrm"; depends=[dplyr e1071 phonTools pracma raster Rcpp RcppArmadillo rgdal rgeos sf sp spatial tibble zoo]; }; + geodrawr = derive2 { name="geodrawr"; version="1.0.1"; sha256="1kbhbdmzp6gc861592xs9kbi1qrsfwq9lk2hbmlavajvil8zv445"; depends=[leaflet sf shiny shinydashboard]; }; geoelectrics = derive2 { name="geoelectrics"; version="0.2.0"; sha256="1dmpaf16750ni4yr36cglfz9pv9jax8jxb3kwn47kxgnx3l8qq98"; depends=[fields lattice rgl]; }; - geofacet = derive2 { name="geofacet"; version="0.1.10"; sha256="07viqfm8h469zjmpk4vp6zxmvwdcsn2wi0j8plyx1nirmxl7s0mw"; depends=[geogrid ggplot2 ggrepel gridExtra gtable imguR rnaturalearth sp]; }; + geofacet = derive2 { name="geofacet"; version="0.2.0"; sha256="1aylx2hwqk75y73az1zf0s5mjww77d7i9kafbkzw383f0i5qx42w"; depends=[geogrid ggplot2 ggrepel gridExtra gtable imguR rnaturalearth sf sp]; }; geofd = derive2 { name="geofd"; version="2.0"; sha256="1rsgy4nxfp1gi4vwh8zfzksr6sr2ga31kmd56q5m56gw530570ra"; depends=[fda]; }; geogrid = derive2 { name="geogrid"; version="0.1.1"; sha256="0b8afwgj9x56z6zh525y7qkiwbv77mjcw3v19kfba0426jn4vi87"; depends=[Rcpp RcppArmadillo rgeos sf sp]; }; - geohashTools = derive2 { name="geohashTools"; version="0.3.0"; sha256="0lc5ib6iylbxn02bl72sh3b6j51zm3b1rnjrj5jdyjj22hm7n7sa"; depends=[]; }; - geojson = derive2 { name="geojson"; version="0.3.2"; sha256="0iqf8jkqgl97a07v8ixr2pbvamwyjswqckdwl3kkxgx7bycndprv"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; + geohashTools = derive2 { name="geohashTools"; version="0.3.1"; sha256="0ks6ga1vsp5z7sy0xcq9nacffmfsx6yqdlnhqflsb8zb9qbygazf"; depends=[]; }; + geojson = derive2 { name="geojson"; version="0.3.4"; sha256="0fvlw06hjb7z0mfsf8vhv1dchdjlvklyzjqlaydjzbwb1kvbhpq7"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; geojsonR = derive2 { name="geojsonR"; version="1.0.8"; sha256="015g1xpvbwgng5vh79q8gx6900skv3p7s2v3xbka08qllvsg5by1"; depends=[R6 Rcpp RcppArmadillo]; }; geojsonio = derive2 { name="geojsonio"; version="0.9.2"; sha256="1m315vr0vw60g6j5i7x293szhji3d4p7f54hxmz1aqw4y7fkr8f6"; depends=[crul geojson jqr jsonlite magrittr maptools readr rgeos sf sp V8]; }; geojsonlint = derive2 { name="geojsonlint"; version="0.4.0"; sha256="0l6xlf6l9shyvdd2ghkhcgbkxpmycapfpxakzbvd92j1x8dmr9az"; depends=[crul jsonlite jsonvalidate V8]; }; - geojsonsf = derive2 { name="geojsonsf"; version="1.3.3"; sha256="0a1ij0nq5d4cvrmqs0mpnc2a1c4h9ms29yln9iay9qi5c5pjdd1k"; depends=[curl jsonify rapidjsonr Rcpp sfheaders]; }; - geoknife = derive2 { name="geoknife"; version="1.6.3"; sha256="092in9wihgijhbkawzjqwfyazz22n4sc06x2gj14yvmp63x5dj36"; depends=[curl httr progress sp whisker xml2]; }; + geojsonsf = derive2 { name="geojsonsf"; version="2.0.0"; sha256="12b3kj63ah9hq4h69qky53iajj3i28h8b9gsw7dz7ykpli275bml"; depends=[jsonify rapidjsonr Rcpp sfheaders]; }; + geoknife = derive2 { name="geoknife"; version="1.6.4"; sha256="026lgxklrf73zfc9j4x4as8f0dbyq5j2prnkg2r570i6xic70bsy"; depends=[curl httr progress sp whisker xml2]; }; geomapdata = derive2 { name="geomapdata"; version="1.0-4"; sha256="1g89msnav87kim32xxbayqcx1v4439x4fsmc8xhlvq4jwlhd5xxw"; depends=[]; }; + geomedb = derive2 { name="geomedb"; version="2.0.1"; sha256="1l35c9x1mhqd7z5ragd7w3ay8v2fdnbmbfx9grwi622j8yz1fbmq"; depends=[ape httr jsonlite]; }; geomerge = derive2 { name="geomerge"; version="0.3.2"; sha256="1i6n88k8icwihr9w7ipjb50f68zad602dipb3hd887y4kyf14wni"; depends=[geosphere ggplot2 gridExtra inlmisc lubridate raster scales sp spdep]; }; - geometa = derive2 { name="geometa"; version="0.6-1"; sha256="0q06vj2r8xyiwrkrzixv0ymvwvznk2a6i2sdmykwyzm7vw7phwkw"; depends=[httr jsonlite R6 XML]; }; - geometr = derive2 { name="geometr"; version="0.2.4"; sha256="0r7cxc69fchrify0gsll4nzdbx5hcw8221y0q0yns5x10zqrscvk"; depends=[checkmate crayon deldir dplyr raster Rcpp readr rgdal rlang sf sp spatstat tibble]; }; + geometa = derive2 { name="geometa"; version="0.6-3"; sha256="0bj1yg1wfcvq24w85cim6hx8qpi2hj7frdz1fwzhlnxnwkwyk8ip"; depends=[httr jsonlite R6 XML]; }; + geometr = derive2 { name="geometr"; version="0.2.5"; sha256="1rsymlszy452bips1rfpr8crsbw4wlm7m83j68n1f5i3m70qp1d1"; depends=[checkmate crayon deldir dplyr raster Rcpp readr rgdal rlang sf sp spatstat tibble]; }; + geometries = derive2 { name="geometries"; version="0.1.0"; sha256="07gkr4ajbvhgf2b4smcm4aqngprsfqmpb2zqgpw18627q1bwx5z6"; depends=[Rcpp]; }; geometry = derive2 { name="geometry"; version="0.4.5"; sha256="1n10l8ax3783v3lgaacb15qsn8b3f0wpmhg3k39j31s6ciyd3vcg"; depends=[linprog lpSolve magic Rcpp RcppProgress]; }; - geomorph = derive2 { name="geomorph"; version="3.2.1"; sha256="0cndp449szvkmmm0lvz4dggg3xym6xycvx9iyhmmvmpm3qhpjlfg"; depends=[ape jpeg rgl RRPP]; }; + geomorph = derive2 { name="geomorph"; version="3.3.1"; sha256="1pj67f329j4zaan4paa9xp0d3cfd00bvs1al8356niz9sc373l4l"; depends=[ape jpeg rgl RRPP]; }; geonames = derive2 { name="geonames"; version="0.999"; sha256="0yz1b7y3vwa4izrhpry4n3iwzb7y67s5p3kgnd7d29cl5pcbpmqx"; depends=[rjson]; }; - geonapi = derive2 { name="geonapi"; version="0.3-1"; sha256="137g89qbwayd3iw4hfy85a40c8wyyhqd2qsrbqr6j5x155q39wlf"; depends=[geometa httr openssl R6 XML]; }; + geonapi = derive2 { name="geonapi"; version="0.4"; sha256="045lrj5qmd3m2ja8i9446d7vz8lmdz8wvm4f3a72cm18xaan1m2p"; depends=[geometa httr keyring openssl R6 XML]; }; geonetwork = derive2 { name="geonetwork"; version="0.3"; sha256="0qjnv91rcxzw44fmbgm4qpcrbj5qgz1lgmyw53imyhxgyv55awxv"; depends=[geosphere igraph rgdal sf sp]; }; - geoops = derive2 { name="geoops"; version="0.2.0"; sha256="0n9n0j849jbqv6y6lqhyhddr5zfz8i9yi03gpg9862nzkvxd3c4k"; depends=[Rcpp]; }; + geoops = derive2 { name="geoops"; version="0.3.0"; sha256="1f54y1j1gbr2cf3c4yving5x9pvnmjb6wd92y4vacjfgms7s9bkz"; depends=[Rcpp]; }; geophys = derive2 { name="geophys"; version="1.4-1"; sha256="1s64sbr0chv0z2vaw059khfkv8iga1kr6428kkglgafq5x2d6h3q"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; georob = derive2 { name="georob"; version="0.3-13"; sha256="1ddynk8ss5jslxrwz7rg650d05qa5sh5qc3rzkrq8s4hpvw1zqgw"; depends=[abind constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; }; - geosapi = derive2 { name="geosapi"; version="0.4-1"; sha256="00c2566r50v4vgqzjvghf4spyfqqxnwkhxj38ivym3l8b0d5fd2x"; depends=[httr openssl R6 XML]; }; + geos = derive2 { name="geos"; version="0.0.1"; sha256="13kwmangzzs1ksk6slib1ym1fgdj0rggwfikrga06zyr959isz6m"; depends=[libgeos]; }; + geosapi = derive2 { name="geosapi"; version="0.5"; sha256="0pkyblhxhx87mcql2v07df0hxaksk126ywik6dxyk44h3krz5y4g"; depends=[httr keyring openssl R6 XML]; }; geoscale = derive2 { name="geoscale"; version="2.0"; sha256="0gisds0in32xhw54fxfyxvwxgrfjs871wmqf6l915nr896rlx0bm"; depends=[]; }; geosed = derive2 { name="geosed"; version="0.1.1"; sha256="07j4q6sgrf83h2gi2j5qap5rifz8gimdacd3b7ld1p3b6ai6kv3r"; depends=[]; }; geospark = derive2 { name="geospark"; version="0.3.1"; sha256="004axa0k9xg1hra8jihwgnc379k8pib1h0zkr82j0m9sii4wrk6r"; depends=[dbplyr dplyr sparklyr]; }; geosphere = derive2 { name="geosphere"; version="1.5-10"; sha256="15xlgsmn0vwky1l13n6acdz6jn2b2na3gf6x367y3qh1f5w4zkan"; depends=[sp]; }; geospt = derive2 { name="geospt"; version="1.0-2"; sha256="1814nn0naxvbn0bqfndpmizjbqcs6rm87g2s378axkn6qpii4bh8"; depends=[fields genalg gsl gstat limSolve MASS minqa plyr sgeostat sp TeachingDemos]; }; geosptdb = derive2 { name="geosptdb"; version="0.5-0"; sha256="0m0dlazhq2za71mi3q8mz2zvz7yrmda7lha02kh9n820bx89v33z"; depends=[FD fields geospt gsl limSolve minqa sp StatMatch]; }; - geostatsp = derive2 { name="geostatsp"; version="1.8.0"; sha256="0vn5zklrw3ds440babgzdm2k8z7pvdqsbwwwcg94d6l188v9mgd3"; depends=[abind Matrix numDeriv raster sp]; }; + geostatsp = derive2 { name="geostatsp"; version="1.8.2"; sha256="06rv4mwzk5rmyp11f0w97ylkcdd3pizzy8gwkmvxzi8hprz5w3ln"; depends=[abind Matrix numDeriv raster sp]; }; geotech = derive2 { name="geotech"; version="1.0"; sha256="18s7w6h1svc4n1hcgj5njfkf3nflkc53cdwsq5112p3442rlz33f"; depends=[]; }; geotools = derive2 { name="geotools"; version="0.1"; sha256="0d0vf9dvrrv68ivssp58qzaj8vra26ms33my097jmzmgagwy1spd"; depends=[]; }; geotoolsR = derive2 { name="geotoolsR"; version="1.1"; sha256="162s37j7wh14h91b6acn453bvgpk3cakfi7mgrdvr5bjdqqn7j7v"; depends=[dplyr geoR ggplot2 tidyr]; }; geotopbricks = derive2 { name="geotopbricks"; version="1.5.4"; sha256="1mn15mchxkv9qqjrcsyx0pf56sdz0ba7i5jd1ci1ilr6rig81ckz"; depends=[raster rgdal stringr zoo]; }; - geouy = derive2 { name="geouy"; version="0.1.9"; sha256="180s3xkfyg281483x6kdh64ydlpd073xxrl7vakzymnm3qv83mql"; depends=[dplyr fs ggplot2 ggsn ggthemes glue raster rgdal rlang sf sp stringr xml2]; }; + geouy = derive2 { name="geouy"; version="0.2.2"; sha256="1wpa6sc4xgf6lwq5a7804fb07fgpx6d5k323dqkaj1nyaaf7mq5c"; depends=[assertthat dplyr fs ggplot2 ggspatial ggthemes glue magrittr RCurl rlang sf stringr testthat viridis]; }; geoviz = derive2 { name="geoviz"; version="0.2.2"; sha256="1wx1p72532xpg6y3rlrvaiwx57xad3d9fvy9mbadvj418xwxnmim"; depends=[abind chron curl dplyr ggplot2 glue magrittr png progress purrr raster readr rgdal rgeos rgl rlang sf slippymath sp stringr tibble tidyr]; }; geozoning = derive2 { name="geozoning"; version="1.0.0"; sha256="0cqdi2jgqrxc339qkr57dp11jp40x99f9inwamnh7ymg2q7kq14s"; depends=[deldir fields ggplot2 gstat maptools RandomFields raster rgeos sp]; }; geozoo = derive2 { name="geozoo"; version="0.5.1"; sha256="0g91yhg7zw1bp0lxxblr2irckjg2rl4pg1vgglccnmxkzn0ji2qi"; depends=[bitops]; }; gepaf = derive2 { name="gepaf"; version="0.1.1"; sha256="0n36w40jrq3qkgmhz9wrnhp6fczw7bm96g950sa4nq33872xhfgm"; depends=[bitops]; }; - germanpolls = derive2 { name="germanpolls"; version="0.2"; sha256="13ss7286sraiq6rgbbmlv3j94av26pv9016hz8hrlzvghmnkfwvh"; depends=[dplyr magrittr purrr RCurl xml2]; }; - germinationmetrics = derive2 { name="germinationmetrics"; version="0.1.3"; sha256="1hfhwprs4b582n81ardh7mah52989shq2cphci9vskwb4jbkyzwx"; depends=[broom data_table ggplot2 ggrepel minpack_lm plyr Rdpack]; }; + germanpolls = derive2 { name="germanpolls"; version="0.3"; sha256="1ck3klc8925mpnrplxpvz376avivil1w0jzcrrlgssawyvfbhgc8"; depends=[dplyr magrittr purrr RCurl readr xml2]; }; + germinationmetrics = derive2 { name="germinationmetrics"; version="0.1.4"; sha256="17183i7nylvrh8rz916q7xg1k9c8z7z03knpisnrcasa49s07mqq"; depends=[broom data_table ggplot2 ggrepel mathjaxr minpack_lm plyr Rdpack]; }; gert = derive2 { name="gert"; version="0.3"; sha256="0caxjcdc2karsxasivkh5sasjkzlif25pw0whdjyq6zh3bvmdlkp"; depends=[askpass credentials openssl]; }; gesca = derive2 { name="gesca"; version="1.0.4"; sha256="1ndn8wgp22pr017x6v7jw8jy4gd06x8110qa860hw8i6pn47wfwv"; depends=[]; }; + gesisdata = derive2 { name="gesisdata"; version="0.1.0"; sha256="02xjpw41gm3778lj01kcwjx0lr1i95a0wlrfvs0r5xlajq13jr67"; depends=[dplyr magrittr rio RSelenium stringr]; }; gestalt = derive2 { name="gestalt"; version="0.1.8"; sha256="1cb04rd3yvkd47byynrn0pq6brlsi2z2iavh4gfrwmqyvks34k51"; depends=[rlang]; }; gestate = derive2 { name="gestate"; version="1.4.0"; sha256="1ybwi1733w8z97sdj38l66mb8ynhqhl68ijns6rvwqxphac6v5x8"; depends=[doParallel foreach shiny shinythemes survival]; }; getCRUCLdata = derive2 { name="getCRUCLdata"; version="0.3.1"; sha256="1961w8vpgamna5a9m367mc9szl3vlv8wgmbhfjc0yxp818p07g3a"; depends=[curl data_table hoardr raster tibble]; }; + getLattes = derive2 { name="getLattes"; version="0.1.1"; sha256="0c6sbvpk3gy0x9d3pxk1z98q6jid5xdylp8zg2f6ba7nw6yyv5cm"; depends=[dplyr pipeR rlang rlist stringi stringr tibble XML]; }; getMet = derive2 { name="getMet"; version="0.3.2"; sha256="0j1h1vy8rd7czpnb4msdb9k560pnh7kjkmpqqwzwin2ms1c0mggb"; depends=[EcoHydRology jsonlite]; }; getPass = derive2 { name="getPass"; version="0.2-2"; sha256="03ydafhh0sk3rcnpr3paajyji64x2ddp6p814p9mvbmyrblcgzcc"; depends=[rstudioapi]; }; getProxy = derive2 { name="getProxy"; version="1.12"; sha256="0qcxihgwy3h2b98z2hwjszwqbz117d89xjys7fy0f8m9hv7rf6ph"; depends=[bitops data_table dplyr httr jsonlite RCurl]; }; - getTBinR = derive2 { name="getTBinR"; version="0.7.0"; sha256="03xfi6cdsw5h7pmnzaxh9ig2j05jmyzzcjrslayanwdfwk370zas"; depends=[data_table dplyr ggplot2 ggthemes magrittr plotly purrr rlang scales tibble tidyr viridis]; }; + getTBinR = derive2 { name="getTBinR"; version="0.7.1"; sha256="0hmqx6cqkp8k6i2mvky6i1iqxgflyr0mdf8lnl9ss4m15h38l5w3"; depends=[data_table dplyr ggplot2 ggthemes magrittr plotly purrr rlang scales tibble tidyr viridis]; }; gethr = derive2 { name="gethr"; version="0.1.0"; sha256="0kpi9b9yg2nh332zkml24pmj6vgjfh8mrfjjg5a636s2rg98g5g7"; depends=[httr jsonlite]; }; getlandsat = derive2 { name="getlandsat"; version="0.2.0"; sha256="15450v93lc4i2qda0zlb5vplwbarkmf3f6sb4rlrdpv9vlj85hff"; depends=[crul data_table rappdirs readr tibble xml2]; }; getmstatistic = derive2 { name="getmstatistic"; version="0.2.1"; sha256="0jbg668kwkvnzgk6678w000mijch28ni9rr5b9c1l9icwcsphmlc"; depends=[ggplot2 gridExtra gtable metafor psych stargazer]; }; getopt = derive2 { name="getopt"; version="1.20.3"; sha256="0zzmzgwl9a4y3s34600vmih22d6y32294f9bvxrnmffnvkgmy7sk"; depends=[]; }; - gets = derive2 { name="gets"; version="0.22"; sha256="0k5lji4gglb1is3j2596yibr6cx4h82aslwcbm4hb6jjb76ajmcv"; depends=[zoo]; }; + gets = derive2 { name="gets"; version="0.25"; sha256="1l4girvj3f0m9d1f06m4rrfh2ysyjcibhhi7yqv5jj60mbyplf0d"; depends=[zoo]; }; getspres = derive2 { name="getspres"; version="0.1.1"; sha256="1k69b7by1398pc9knp97r3k6pv8hixzianqal71ggdrwsb3n1gis"; depends=[colorRamps colorspace dplyr metafor plotrix RColorBrewer]; }; gettz = derive2 { name="gettz"; version="0.0.4"; sha256="1j83pdny3phfflkdjwiflyfvighn73pysw5bac4hx079dda8k25g"; depends=[]; }; gexp = derive2 { name="gexp"; version="1.0-1"; sha256="1i3sarsawax1landjbm8gxrcrimwzdgrbybzipqwxdrmlgvxslqk"; depends=[jpeg mvtnorm png]; }; - gfcanalysis = derive2 { name="gfcanalysis"; version="1.5.0"; sha256="1cg34c4hr8kwc23qlv2m6qw2k7ah4w8s70q0hf4hnvp66rw4kaqh"; depends=[animation geosphere ggplot2 plyr raster rasterVis RCurl rgdal rgeos sp stringr]; }; + gfcanalysis = derive2 { name="gfcanalysis"; version="1.6.0"; sha256="0w0r4w570dp7n5ixm7qv3x1pw478dghqbyfvfxfi99f5453jdma1"; depends=[animation geosphere ggplot2 plyr raster rasterVis RCurl rgdal rgeos sp stringr]; }; gfer = derive2 { name="gfer"; version="0.1.10"; sha256="1y0ra8k7zka43ibiii16vbwnc3m1i77yc9zj8rhzhmvhajjwad3l"; depends=[circlize data_table ggplot2 ggrepel googlesheets gsheet httr jsonlite rvest scatterpie stringi tidyr V8 xml2]; }; gfmR = derive2 { name="gfmR"; version="1.1-0"; sha256="0qzzbcra1fnbp0h31b1as20yhmqmi7p62xrhikj64an9avg9b277"; depends=[faraway nnet]; }; gfoRmula = derive2 { name="gfoRmula"; version="0.3.1"; sha256="1y1k5zwv06kc6qk7ki7x7c1618irvwd6iw26gs5n8lv8z3cifqmy"; depends=[data_table ggplot2 ggpubr nnet progress stringr survival truncnorm truncreg]; }; + gfonts = derive2 { name="gfonts"; version="0.1.1"; sha256="1nkg4mfmgysk0ibzyb4h3qqxwhb5m84n8ykk6v5hz087yarac32x"; depends=[crul glue htmltools jsonlite shiny usethis]; }; gg_gap = derive2 { name="gg.gap"; version="1.3"; sha256="0m66050ryn31xmsmmikjsssllasvjdmp9yjbwfdwfpwdv106zn9h"; depends=[cowplot ggplot2]; }; ggBubbles = derive2 { name="ggBubbles"; version="0.1.4"; sha256="116rl8j0s9xwhh9jl5yj9fspkhv2zrirbx9247hhns9ngrdn4i3x"; depends=[dplyr ggplot2]; }; ggChernoff = derive2 { name="ggChernoff"; version="0.2.0"; sha256="09bh9isvx3hwwvg72fv6z3fvp8dimpbhvbp328z8amq8jjhph4vf"; depends=[ggplot2 scales]; }; ggExtra = derive2 { name="ggExtra"; version="0.9"; sha256="18mbi6gblqmrsciad1d2c9ngllk6mayaqj43k40hjq9ydqnvjbgj"; depends=[colourpicker ggplot2 gtable miniUI R6 scales shiny shinyjs]; }; - ggPMX = derive2 { name="ggPMX"; version="1.1"; sha256="0magxjrm6za9g1hhmykv47gh6lyc1zz7bffcrchxnybsv5mih9p8"; depends=[assertthat checkmate data_table GGally ggplot2 gtable knitr magrittr R6 rmarkdown stringr yaml zoo]; }; + ggPMX = derive2 { name="ggPMX"; version="1.1.2"; sha256="1lcfjj6k4y69zs0zr3xf3l2hz8mdjw0wqbw5p8mqjm24qkynqb9a"; depends=[assertthat data_table GGally ggplot2 gtable knitr magrittr R6 rmarkdown stringr yaml zoo]; }; ggQC = derive2 { name="ggQC"; version="0.0.31"; sha256="1j9cs97hcj5zmqvn5rjr3gl0b9748s3pv2nb7v66dsyjdwvj7wyy"; depends=[dplyr ggplot2 tidyr]; }; ggQQunif = derive2 { name="ggQQunif"; version="0.1.5"; sha256="0vrxmqxy946mwdq0mb2m1ch41r0chrw7hcn18dr3mp10bv7pl7wj"; depends=[dplyr ggplot2 scales]; }; ggROC = derive2 { name="ggROC"; version="1.0"; sha256="0p9gdy7ia59d5m84z9flz5b03ri7nbigb3fav2v2wrml300d24vn"; depends=[ggplot2]; }; @@ -8349,35 +8640,35 @@ in with self; { ggTimeSeries = derive2 { name="ggTimeSeries"; version="1.0.1"; sha256="12gi0zfl8g3x78skpkhska8b3z1pp636shrbx33rkq0iacsipqga"; depends=[data_table ggplot2]; }; ggVennDiagram = derive2 { name="ggVennDiagram"; version="0.3"; sha256="1jgxzb3iffhx6xyn14nldljkaangdvzrxzfkibsb6g787fgv8ng9"; depends=[dplyr ggplot2 sf VennDiagram]; }; ggallin = derive2 { name="ggallin"; version="0.1.1"; sha256="0hrxa7m07ppvnndivxcgxksdyblb6fw17aw46maqavlvcrz3fjgm"; depends=[ggplot2 scales]; }; - ggalluvial = derive2 { name="ggalluvial"; version="0.11.3"; sha256="19kad21rysh9f6fifd9drw9q90c3chpq33pip10zl2k1zl2wlif0"; depends=[dplyr ggplot2 lazyeval rlang tidyr tidyselect]; }; + ggalluvial = derive2 { name="ggalluvial"; version="0.12.1"; sha256="0i3bbv841rpad1n45jd34n4vgh7w70m2njhcyx136y1r72z7nz0n"; depends=[dplyr ggplot2 lazyeval rlang tidyr tidyselect]; }; ggalt = derive2 { name="ggalt"; version="0.4.0"; sha256="0ssa274d41vhd6crzjz7jqzbwgnjimxwxl23p2cx35aqs5wdfjpc"; depends=[ash dplyr extrafont ggplot2 gtable KernSmooth maps MASS plotly proj4 RColorBrewer scales tibble]; }; ggamma = derive2 { name="ggamma"; version="1.0.1"; sha256="1zc4p2bz4pxqycrzgb9wwl53lxqcikxsihna6ff8pmw1n623j85z"; depends=[]; }; - gganimate = derive2 { name="gganimate"; version="1.0.5"; sha256="0kvz9gm56zz61bq7sky0m9mrlk8awjx0xm3yw9dawz1vw4a5fr3x"; depends=[ggplot2 glue plyr progress rlang scales stringi tweenr]; }; - ggasym = derive2 { name="ggasym"; version="0.1.3"; sha256="1vfwzjwmh27ki0j7nadmnl28wddjs4nzmraak868hmph9a2bjdgj"; depends=[dplyr ggplot2 magrittr purrr rlang scales stringr tibble tidyr]; }; + gganimate = derive2 { name="gganimate"; version="1.0.6"; sha256="0xpa18k7v5k284g7hcpyc1hi2q6962i1j7i3j4g4b5c259gz4crn"; depends=[ggplot2 glue plyr progress rlang scales stringi tweenr]; }; + ggasym = derive2 { name="ggasym"; version="0.1.5"; sha256="1fc0vrkg57h9qqyrfwwippq7yy172g1w79cdb672myjxfjpnxwp4"; depends=[dplyr ggplot2 magrittr purrr rlang scales stringr tibble tidyr]; }; ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.6.0"; sha256="0crk29p5vi1r3a988kms4y7r0iqwgwzsikgvh18r9wbzyr98bb5v"; depends=[beeswarm ggplot2 vipor]; }; ggbuildr = derive2 { name="ggbuildr"; version="0.1.0"; sha256="0pld635v6fv46ky7s4icwxlcnr7z6bp5ikf20adpkljwhy0wwxak"; depends=[ggplot2 purrr readr]; }; ggbump = derive2 { name="ggbump"; version="0.1.0"; sha256="15cnzv2q3gylkmd1zj044cp14ldnkc4fzwmxaqpc8cagwf9i10zk"; depends=[dplyr ggplot2 purrr tidyr]; }; - ggcharts = derive2 { name="ggcharts"; version="0.1.0"; sha256="0prv174ifhj4chp23r4wwmgkhw2g8q8chm2jixzbks2z08xqvahs"; depends=[dplyr ggplot2 magrittr patchwork rlang]; }; + ggcharts = derive2 { name="ggcharts"; version="0.2.1"; sha256="1c0gdn8skkm82f3qxv9551l36zwqcga9b9sbc48q8hp71ay4ac6b"; depends=[colorspace dplyr ggplot2 lifecycle magrittr patchwork rlang]; }; ggconf = derive2 { name="ggconf"; version="0.1.3"; sha256="0g4xasqhdiqfqahakv6p5npl56f2iakx4bnc9v9zcjr077kdda4n"; depends=[ggplot2 rly]; }; ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.3"; sha256="0hi9lz121ya1l2lbm7rqlxg6fs6bvxck396dngnidrhl5fvqb41b"; depends=[ggplot2 reshape2]; }; ggdag = derive2 { name="ggdag"; version="0.2.2"; sha256="0gv7gf2bbrd0m1hjvk6j39ckyvxn5lj749q4fzlzzc5mxr3qdfyz"; depends=[dagitty dplyr forcats ggplot2 ggraph ggrepel igraph magrittr pillar purrr stringr tibble tidygraph]; }; ggdark = derive2 { name="ggdark"; version="0.2.1"; sha256="1w93g2j4g45x9s841v9zi18lxzda81ipa13fajqc6p9xk8frvgrf"; depends=[ggplot2]; }; ggdemetra = derive2 { name="ggdemetra"; version="0.2.1"; sha256="1d5adnamv2gnnj3q8779brl827d2zbqpkgfz2r097jndy5ng1021"; depends=[ggplot2 ggrepel gridExtra RJDemetra]; }; - ggdendro = derive2 { name="ggdendro"; version="0.1-20"; sha256="1zzq1hxd0d1qa5hrzwfkdw6fzscpcafbwbpkrb62dm559y8awp0j"; depends=[ggplot2 MASS]; }; - ggdistribute = derive2 { name="ggdistribute"; version="1.0.3"; sha256="07bsnfp1chf52gprw7g5kyqf6l6yzmnlv13x9dj1wa6rjwq1342i"; depends=[data_table dplyr ggplot2 magrittr tibble]; }; + ggdendro = derive2 { name="ggdendro"; version="0.1.21"; sha256="0jcjdkhd3wirjgv4v3gb9rw8idyymwhwnxplg3wi8wa3mwr9rhq2"; depends=[ggplot2 MASS]; }; + ggdist = derive2 { name="ggdist"; version="2.2.0"; sha256="1crncf4zi00c42n8f83psqz4avrw83madq5z0gxc8014nm069183"; depends=[distributional dplyr forcats ggplot2 HDInterval purrr rlang scales tibble tidyr vctrs]; }; ggdmc = derive2 { name="ggdmc"; version="0.2.6.0"; sha256="1gncv7npl548k3zd41x2gwg5qywn5rp6zb4i7ga78sy77mvi3x92"; depends=[coda data_table ggplot2 matrixStats Rcpp RcppArmadillo]; }; - gge = derive2 { name="gge"; version="1.4"; sha256="0plwk5j2n0309ghgn8r4ws3azwn7n4jb7yfykiiwwalhs3k05lsa"; depends=[nipals reshape2 rgl]; }; + gge = derive2 { name="gge"; version="1.5"; sha256="19jh769yy8dm0z2gw6kqi08rpbbdc4rsb2l9lfh5g3ma7yk0ija9"; depends=[nipals reshape2 rgl]; }; ggeasy = derive2 { name="ggeasy"; version="0.1.2"; sha256="06rynzv6vqngay5cjrig550dfada66075qs69l4rpfqci0vh05km"; depends=[ggplot2 rlang]; }; - ggedit = derive2 { name="ggedit"; version="0.3.0"; sha256="1v9apfkm47jcqyhjrvv8ig09gz6zsss5xj5mrckfjybd5ca08rzn"; depends=[colourpicker dplyr ggplot2 magrittr miniUI plyr purrr rlang rstudioapi scales shiny shinyAce shinyBS tidyr]; }; - ggeffects = derive2 { name="ggeffects"; version="0.14.3"; sha256="06p80bgjhjknzlb4vs4n41i9n9vv5agncakl9f92zkaahgyzd6sd"; depends=[insight MASS sjlabelled]; }; + ggedit = derive2 { name="ggedit"; version="0.3.1"; sha256="10fbjqq6l7wfibi65mq423w7v8gymr541if749qhsnd9b2jyhaj5"; depends=[colourpicker dplyr ggplot2 magrittr miniUI plyr purrr rlang rstudioapi scales shiny shinyAce shinyBS tidyr]; }; + ggeffects = derive2 { name="ggeffects"; version="0.15.1"; sha256="12z58casz0yl1w7nfs64bz4miz0mmc300ap3rz4d2cc4z0rg0r47"; depends=[insight MASS sjlabelled]; }; ggenealogy = derive2 { name="ggenealogy"; version="1.0.1"; sha256="19six9ln1yaqv268abm9qvb61nl8zdz3gghwr8hmwsa94xwhzhkq"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; }; - ggetho = derive2 { name="ggetho"; version="0.3.5"; sha256="1gwd4mkja2xypzm2c1w61lq126cn1fdcw8l8gkzsl2ljn2xd2phi"; depends=[behavr data_table ggplot2 labeling rlang scales stringr]; }; + ggetho = derive2 { name="ggetho"; version="0.3.6"; sha256="1iv0vad8y85bvz8rx0flqyrb38d79j9fhmd6ay5siyccigi88clj"; depends=[behavr data_table ggplot2 labeling rlang scales stringr]; }; ggfan = derive2 { name="ggfan"; version="0.1.3"; sha256="1p3hbznpsaznlk0lnjyazc130www0p5919qplg3kspng7qh8p22w"; depends=[colorspace dplyr ggplot2 rstan]; }; - ggfittext = derive2 { name="ggfittext"; version="0.8.1"; sha256="1a5k8fba2qjxnpd14vqkakpzcwkzqbpvs8h6fb9zh62y91n6p26v"; depends=[ggplot2 shades stringi]; }; + ggfittext = derive2 { name="ggfittext"; version="0.9.0"; sha256="1jfzlyi0ss5ymzinllarzx5liyhw80n5ngbhrxv582c140hz0mr3"; depends=[ggplot2 shades stringi]; }; ggfocus = derive2 { name="ggfocus"; version="1.0.0"; sha256="03q0rz7flm8sc8hrlkcm5fz66qiyxb8z8q4bh9dglhw0jc8q1fvb"; depends=[dplyr ggplot2 magrittr RColorBrewer rlang]; }; - ggforce = derive2 { name="ggforce"; version="0.3.1"; sha256="04926cqrda6psvy2nzkkw4czwyxdp7fnxg76byp14v12kgd72lm0"; depends=[ggplot2 gtable MASS polyclip Rcpp RcppEigen rlang scales tidyselect tweenr withr]; }; + ggforce = derive2 { name="ggforce"; version="0.3.2"; sha256="1lplxyq5bgx90dgaimhynpcywag1gp6vlsy7q52ay1nfc35qmkjc"; depends=[ggplot2 gtable MASS polyclip Rcpp RcppEigen rlang scales tidyselect tweenr withr]; }; ggformula = derive2 { name="ggformula"; version="0.9.4"; sha256="04vdhg1bbc1psrx9ggaphz7cx4fw5xsmhkqpqfcg2w4ba2bjy46f"; depends=[ggforce ggplot2 ggstance magrittr mosaicCore rlang stringr tibble]; }; - ggfortify = derive2 { name="ggfortify"; version="0.4.9"; sha256="1p6knrbyaynaqwd939w09hpf1zz1gn95cb46sfgppl8l98krb2h5"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; + ggfortify = derive2 { name="ggfortify"; version="0.4.10"; sha256="0wmcwp63h90v3f00ixszvis4z28im621jickvc0wgi6qvjvnayq0"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; gggenes = derive2 { name="gggenes"; version="0.4.0"; sha256="13hrjh80rlri8vm736p85v2jwwpck8gc5jfps1qrqcq86kv2xgkn"; depends=[ggfittext ggplot2 rlang]; }; ggghost = derive2 { name="ggghost"; version="0.2.1"; sha256="0kvsjadxxdf6yvzk4a6yqkg02q1ysslvf3m0a369bdim396z4hnv"; depends=[animation ggplot2]; }; gggibbous = derive2 { name="gggibbous"; version="0.1.0"; sha256="1g6igmj2nh4b516p1wcs1cwgzdnawvf3snxzwxjkmdc4yqbzyz24"; depends=[ggplot2 scales]; }; @@ -8389,68 +8680,73 @@ in with self; { ggimg = derive2 { name="ggimg"; version="0.1.0"; sha256="0lgak04690xvy0j1g8rgbj9x81ychkx6hp1f8d92piz432wb1z71"; depends=[abind ggplot2 jpeg png]; }; gginference = derive2 { name="gginference"; version="0.1.1"; sha256="1nla93arkq68j6w56y4p6mj4i8j6rg8rpl0p2yhdzcq8bgzkqym8"; depends=[ggplot2 rlang]; }; gginnards = derive2 { name="gginnards"; version="0.0.3"; sha256="15ly88wjsd2fqvp483376rm2fczcbmj1s1vagb70z9z7968407xy"; depends=[ggplot2 magrittr rlang stringr tibble]; }; - ggiraph = derive2 { name="ggiraph"; version="0.7.0"; sha256="1002mf2dp7ram5yrj9qlg9rawz083k130k6bjvdidq0x800ps7b4"; depends=[gdtools ggplot2 htmltools htmlwidgets purrr Rcpp rlang uuid xml2]; }; + ggiraph = derive2 { name="ggiraph"; version="0.7.8"; sha256="0iz2v73m8sm80k2vb62ajrirsh00g680938gp6haybq4s61imdki"; depends=[gdtools ggplot2 htmltools htmlwidgets purrr Rcpp rlang uuid]; }; ggiraphExtra = derive2 { name="ggiraphExtra"; version="0.2.9"; sha256="1qmw7z10h1x6xnlpq7shafg6w2bal8ni02c07fyy9f7hm02xfnzs"; depends=[dplyr ggforce ggiraph ggplot2 magrittr mgcv mycor plyr ppcor purrr RColorBrewer reshape2 scales sjlabelled sjmisc stringr tidyr webshot ztable]; }; ggjoy = derive2 { name="ggjoy"; version="0.4.1"; sha256="012md2m0jqfcccb933j423m3ck31v3p0pd41gjxpyg9082y7ixyj"; depends=[ggplot2 ggridges]; }; gglasso = derive2 { name="gglasso"; version="1.5"; sha256="12l0ac1n54z41yw7c00fm6q2mjmhp9blk4f8vp7q2my2xxwh1fmj"; depends=[]; }; gglogo = derive2 { name="gglogo"; version="0.1.5"; sha256="08wg0svcksdzchp6bdllmsnklxia3d0ygqwzgmqb2sga8nbkf5hl"; depends=[dplyr ggplot2 jpeg knitr magrittr plyr purrr reshape2 rlang tidyr]; }; ggloop = derive2 { name="ggloop"; version="0.1.0"; sha256="0jpbgb16jfsv557zvishln98y7nd6p1ryp6hxkrkmhp9p35vzvc0"; depends=[assertthat ggplot2 lazyeval magrittr plyr]; }; - gglorenz = derive2 { name="gglorenz"; version="0.0.1"; sha256="0ar9ih6yvxb5pyba8y8jjsbwaq808baysjhpd15psjzhfbimjqfm"; depends=[ggplot2 ineq]; }; + gglorenz = derive2 { name="gglorenz"; version="0.0.2"; sha256="1kag8p2chd0sbn8affpxzi4aawpm71ls97dwdgx7mxxfwkdb2q0y"; depends=[ggplot2 ineq]; }; ggm = derive2 { name="ggm"; version="2.5"; sha256="11wc6k2kj2ydy0dyks5mbvbhxm1r43id87anl1jg6dn0yv4m78di"; depends=[graph igraph]; }; ggmap = derive2 { name="ggmap"; version="3.0.0"; sha256="13dmzl6z62pzjiffilarkji46vy0sacxa8a7mhrhc3biq3ylzhln"; depends=[bitops digest dplyr ggplot2 glue httr jpeg magrittr plyr png purrr RgoogleMaps rjson scales stringr tibble tidyr]; }; ggmcmc = derive2 { name="ggmcmc"; version="1.4.1"; sha256="05dsxp5694hljbjz13gpb4f9sxv5jphsihza101ck08yzgn6kpvf"; depends=[dplyr GGally ggplot2 tidyr]; }; ggmix = derive2 { name="ggmix"; version="0.0.1"; sha256="19dp4ic3mxrqdzr0hi44fm2axfi2b693k4xfs28h664123c9kyvn"; depends=[glmnet MASS Matrix]; }; ggmosaic = derive2 { name="ggmosaic"; version="0.2.0"; sha256="0byhp7125r015wbbnv6fq13bx38krf11r39jx9dzbr0ci6kqzkdb"; depends=[dplyr ggplot2 plotly productplots purrr rlang tidyr]; }; ggmr = derive2 { name="ggmr"; version="0.1.1"; sha256="0941rvh7m5knlhp0m0mhm4j8spmch0pyvwhzs3bycq3vzlvzv1w7"; depends=[MASS]; }; - ggmsa = derive2 { name="ggmsa"; version="0.0.2"; sha256="1ryzifcm1qsqng5gljdhgx6p81i8wg9s86j9bnlcllp0d6mbca2x"; depends=[Biostrings ggplot2 ggseqlogo magrittr tidyr treeio]; }; + ggmsa = derive2 { name="ggmsa"; version="0.0.4"; sha256="1sxnzr39ns6r1h5xr5mwnqbksva156cyx3gc1yq5g3568l2kmx3j"; depends=[Biostrings ggplot2 magrittr stringr tidyr]; }; ggmuller = derive2 { name="ggmuller"; version="0.5.4"; sha256="0y7bm9fm5i8acpy6fa903ca2r9yasky7kg2hicm4xz5ni09jm20x"; depends=[ape dplyr ggplot2]; }; ggnetwork = derive2 { name="ggnetwork"; version="0.5.8"; sha256="1gdvywx2n4ph0dr8q1c5gfsmv4jjy0g41cnhjn68kkmg5fdc3ix8"; depends=[ggplot2 ggrepel igraph network sna]; }; - ggnewscale = derive2 { name="ggnewscale"; version="0.4.1"; sha256="1ryg0zs5qa2gjch3c21ylwwzr6kqbla2jpwfkrwbqbgjryhbphlm"; depends=[ggplot2]; }; + ggnewscale = derive2 { name="ggnewscale"; version="0.4.2"; sha256="15555xh0iahczxhp85ki45qvrp7nrnpv1hag4dy55ja4rcbfzb36"; depends=[ggplot2]; }; ggnormalviolin = derive2 { name="ggnormalviolin"; version="0.1.2"; sha256="1gbv2b86nznw5bs05c4ns96b8hsxkhikhcf8syl2qbbafzy8vx6y"; depends=[dplyr ggplot2 magrittr scales]; }; + ggnuplot = derive2 { name="ggnuplot"; version="0.1.0"; sha256="0i09ybmxdjyr15z1a651k3bkbqskri4ipcyjap93020zbfv05r9c"; depends=[ggplot2]; }; + ggpacman = derive2 { name="ggpacman"; version="0.1.0"; sha256="1040d6aciyllrpszh7l7y55fw4dx8cya2yvj0x4i2fibvygz83p6"; depends=[dplyr gganimate ggforce ggplot2 magrittr purrr rlang tidyr]; }; ggpage = derive2 { name="ggpage"; version="0.2.3"; sha256="1qi8ydq3fxb1smk0jg9z1cv2xjq8c1lsnmz8l7c61rvdbjm3710v"; depends=[dplyr ggplot2 magrittr purrr rlang stringr tidytext]; }; ggparallel = derive2 { name="ggparallel"; version="0.2.0"; sha256="0zxaff0jbqkbavsmh1yyp3vdrxsam6a66hjw8lamv9pksdw1s2wf"; depends=[ggplot2 plyr reshape2]; }; ggparliament = derive2 { name="ggparliament"; version="2.0.0"; sha256="04za4lm3lir95bgda1rzlsyil2fkac3j5f5f1pjw2samy6pjz80r"; depends=[dplyr ggplot2 rlang]; }; ggparty = derive2 { name="ggparty"; version="1.0.0"; sha256="0s6hr5p930kl3pj6ajwgwqz6yikc3l9hhzy1yn0nqc0r8pp2jyqf"; depends=[checkmate ggplot2 gtable partykit rlang survival]; }; ggperiodic = derive2 { name="ggperiodic"; version="1.0.0"; sha256="1cig715qy1kjjrn89cf505njdl2xccvjc5l0fwbqh86xgjayslxb"; depends=[data_table dplyr ggplot2 sticky tidyselect]; }; ggplot_multistats = derive2 { name="ggplot.multistats"; version="1.0.0"; sha256="1afzfa86vc484bcwpg7m1ky03jpax584rigzgai8w06pifkmz0il"; depends=[ggplot2 hexbin rlang scales]; }; - ggplot2 = derive2 { name="ggplot2"; version="3.3.0"; sha256="0j21am605kqqzlwhm45kaj0m2irnmy2vz0j7kzi9f0qdzrv3q3ij"; depends=[digest glue gtable isoband MASS mgcv rlang scales tibble withr]; }; + ggplot2 = derive2 { name="ggplot2"; version="3.3.2"; sha256="0wsib5qpzn4d0w1ss3x158xmrawkms8vvsfvr3mh40pvd8g2ibad"; depends=[digest glue gtable isoband MASS mgcv rlang scales tibble withr]; }; ggplot2movies = derive2 { name="ggplot2movies"; version="0.0.1"; sha256="067ld6djxcpbliv70r2c1pp4z50rvwmn1xbvxfcqdi9s3k9a2v8q"; depends=[]; }; ggplotAssist = derive2 { name="ggplotAssist"; version="0.1.3"; sha256="1g0s1dkbrxmwqjqppagdbnx24s0nbjn09xwxix3dkfssz6drhala"; depends=[dplyr editData gcookbook ggplot2 ggthemes magrittr miniUI moonBook rstudioapi scales shiny shinyAce shinyWidgets stringr tibble tidyverse]; }; ggplotgui = derive2 { name="ggplotgui"; version="1.0.0"; sha256="1yfglg5438mwyml845isimzma5q6824x19jka509ng49bzmf1za0"; depends=[ggplot2 haven plotly RColorBrewer readr readxl shiny stringr]; }; ggplotify = derive2 { name="ggplotify"; version="0.0.5"; sha256="0pfnp4lrissf21z7867kdm6slr979kchyva8iaf83i1302kscph3"; depends=[ggplot2 gridGraphics rvcheck]; }; ggplotlyExtra = derive2 { name="ggplotlyExtra"; version="0.0.1"; sha256="1m2rhylpzj934gb50lxjp47rxz0kwl9i1p3n7w1rz4qi96pr5p1c"; depends=[ggplot2 plotly rlang]; }; - ggpmisc = derive2 { name="ggpmisc"; version="0.3.4"; sha256="0xc1yp0kphipq23ri4ij93garx1x2nrf4i0lhs6m10pp9yz7fbmj"; depends=[broom dplyr ggplot2 gridExtra lubridate magrittr MASS plyr polynom rlang scales splus2R stringr tibble xts zoo]; }; + ggpmisc = derive2 { name="ggpmisc"; version="0.3.5"; sha256="0ma2d3a3v8n85sghxr9anl6vgbs8gi82i1dllw99n81gsm59wgin"; depends=[broom dplyr ggplot2 gridExtra lubridate magrittr MASS plyr polynom rlang scales splus2R stringr tibble xts zoo]; }; ggpointdensity = derive2 { name="ggpointdensity"; version="0.1.0"; sha256="0c9a14j3b0hvamqylhzldw2hjdxmfbllwahjkf3gg2rw337ld9iy"; depends=[ggplot2]; }; ggpol = derive2 { name="ggpol"; version="0.0.6"; sha256="1316g0y0i4nm4nsa422pbrv4w3g0rv1jxy6m7qasarq2mml9lxjs"; depends=[dplyr ggplot2 glue gtable plyr rlang tibble]; }; ggpolypath = derive2 { name="ggpolypath"; version="0.1.0"; sha256="0g9zfal3vqcx16fi4abxm6l5sam475lk1f6bdik487wc2v0dkq83"; depends=[ggplot2]; }; - ggpubr = derive2 { name="ggpubr"; version="0.2.5"; sha256="0kb3hpmnhj4mkbx1kx0kv5y22himr8dijqx7ra0h8hi0pf2l2ha7"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif glue gridExtra magrittr polynom purrr rlang scales tidyr]; }; + ggpubr = derive2 { name="ggpubr"; version="0.4.0"; sha256="0x86lmghr25k8w90yrp360dn42dhp5cjvjpdiv2s2gxfn701xcmb"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif glue gridExtra magrittr polynom purrr rlang rstatix scales tibble tidyr]; }; ggpval = derive2 { name="ggpval"; version="0.2.3"; sha256="04s0pwi0pljdd8r6wnjyb3i3php6qgvpc1mdvhywcx2i2zqip2qx"; depends=[data_table ggplot2]; }; - ggquickeda = derive2 { name="ggquickeda"; version="0.1.6"; sha256="1yj1gfl7hvshjp5gqm1jgrfvnnvrn32zkv5d2il41hmp8hp71y2d"; depends=[colourpicker dplyr DT Formula GGally ggplot2 ggpmisc ggpubr ggrepel ggstance gridExtra Hmisc lazyeval markdown plotly quantreg rlang scales shiny shinyjqui shinyjs stringr survival survminer table1 tidyr]; }; + ggquickeda = derive2 { name="ggquickeda"; version="0.1.7"; sha256="1vzxqd9djfbipsals5h6h64hxr4qcmv8j562ycbm0q566bm8ff2i"; depends=[colourpicker dplyr DT Formula GGally ggplot2 ggpmisc ggpubr ggrepel ggstance gridExtra Hmisc lazyeval markdown plotly quantreg rlang scales shiny shinyjqui shinyjs stringr survival survminer table1 tidyr]; }; ggquiver = derive2 { name="ggquiver"; version="0.2.0"; sha256="1hsayqxf4brck1rx97yyprw1axc83lksgf7mn3rh8hqx4h1f5f0f"; depends=[dplyr ggplot2]; }; - ggraph = derive2 { name="ggraph"; version="2.0.2"; sha256="1ckq82hg52vr2wydkqv2wrppgjyvddd6bwqzrngqlm7j71xapjl0"; depends=[digest dplyr ggforce ggplot2 ggrepel graphlayouts gtable igraph MASS Rcpp rlang scales tidygraph viridis]; }; - ggraptR = derive2 { name="ggraptR"; version="1.2"; sha256="18r70pnz7x8728lg447ds7swgk539gga9shax7rs4x56a710pf3q"; depends=[dplyr ggplot2 pacman purrr shiny]; }; + ggraph = derive2 { name="ggraph"; version="2.0.3"; sha256="1pz06j0za4p6dc3fqjzcw8bpym70bmnfcvpv1q34r74rnwzjdyvq"; depends=[digest dplyr ggforce ggplot2 ggrepel graphlayouts gtable igraph MASS Rcpp rlang scales tidygraph viridis]; }; + ggraptR = derive2 { name="ggraptR"; version="1.3"; sha256="1i6jp0n1sz5b4sv3d4h5624zhlknih2qp6p2m2ri6s3gsh1pl9zz"; depends=[dplyr ggplot2 pacman purrr shiny]; }; ggrasp = derive2 { name="ggrasp"; version="1.0"; sha256="0lini89mcxl30kx38vny9896hdf4afrz5dgivbbikkb2yyfh2cq1"; depends=[ape bgmm colorspace ggplot2 mixtools]; }; + ggrastr = derive2 { name="ggrastr"; version="0.1.9"; sha256="12iam75hg5mgqi9wbpyyvr6arj7jxy0g5s5niz70j8zy06jji6rn"; depends=[Cairo ggbeeswarm ggplot2]; }; ggrepel = derive2 { name="ggrepel"; version="0.8.2"; sha256="1qaifn3dazdqbqlii210xhw7yf142iw7g9p2axmmxbz90p0by08d"; depends=[ggplot2 Rcpp scales]; }; ggridges = derive2 { name="ggridges"; version="0.5.2"; sha256="03pz257aw0mkh5k75rby9givkc1ky3n5scvhjhjiz9vry9fpffmh"; depends=[ggplot2 plyr scales withr]; }; - ggrisk = derive2 { name="ggrisk"; version="1.0"; sha256="02a11q0mz3a5qqssakys8jxy5rqmi6cwk6japv65fkz741fh65wx"; depends=[cutoff do egg fastStat ggplot2 nomogramFormula rms set survival]; }; + ggrisk = derive2 { name="ggrisk"; version="1.2"; sha256="1zcqpddv02hr77s8gw17gr7yww7h9yma0279rxnckxhxlfi88ym5"; depends=[cutoff do egg fastStat ggplot2 nomogramFormula rms set survival]; }; ggroups = derive2 { name="ggroups"; version="2.0.3"; sha256="1qlx1jfmmpygswwbrqs7pxm426zggxgvd4q3jp9abfaq9aczs10p"; depends=[]; }; ggsci = derive2 { name="ggsci"; version="2.9"; sha256="0g73x6grbka7ahjh6z23m3wrcifp5rdfdiasbl8lq4sp6rplxwaa"; depends=[ggplot2 scales]; }; ggseas = derive2 { name="ggseas"; version="0.5.4"; sha256="1jpdijwll5l7bg7cmjnklkxffysi9ckzg50rw2a2cd00zwby11q9"; depends=[ggplot2 rlang seasonal zoo]; }; ggseqlogo = derive2 { name="ggseqlogo"; version="0.1"; sha256="13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1"; depends=[ggplot2]; }; ggsignif = derive2 { name="ggsignif"; version="0.6.0"; sha256="17j9hg967k1wp9xw3x84mqss58jkb8pvlrnlchz4i1hklgykxqbg"; depends=[ggplot2]; }; ggsn = derive2 { name="ggsn"; version="0.5.0"; sha256="04vnap83w06hbqqi5kgxmrdb3a13n5mcdk5lllymv6nrzvl84f2x"; depends=[ggmap ggplot2 maptools png sf]; }; - ggsoccer = derive2 { name="ggsoccer"; version="0.1.4"; sha256="126czg8xyms959pc398d63fwrs6p9f253xnrgig5sw4vfxl9hqgm"; depends=[ggplot2]; }; + ggsoccer = derive2 { name="ggsoccer"; version="0.1.6"; sha256="1b3cx2ym3pknshrxmdgwzyx92c1hl6kyvxm2s8izlaa21z8v6z59"; depends=[ggplot2]; }; ggsolvencyii = derive2 { name="ggsolvencyii"; version="0.1.2"; sha256="0jzj4iglgzwp6pfs5zr7mirdiqrrmbwdvl245b1fwf42rnxbqrq6"; depends=[dplyr ggplot2 magrittr tidyr]; }; ggsom = derive2 { name="ggsom"; version="0.4.0"; sha256="0qsih00rm3ng2zh6p2s7a35rh1qlvbkn82s53v765w60fjmhwkwf"; depends=[assertthat data_table dplyr entropy ggplot2 kohonen magrittr tibble tidyr]; }; - ggspatial = derive2 { name="ggspatial"; version="1.0.3"; sha256="0ka15qj3f0yq9nfkgk77wp490nz9ymi80918apv9zp6x39kcprj9"; depends=[abind ggplot2 plyr raster reshape2 rlang rosm scales sf tibble tidyr]; }; - ggspectra = derive2 { name="ggspectra"; version="0.3.5"; sha256="0pvkh4cr9nyhhv9ikjs7nhjagal63k8zfbik28cmw2c2x31m019v"; depends=[dplyr ggplot2 ggrepel lubridate photobiology photobiologyWavebands scales tidyr]; }; + ggspatial = derive2 { name="ggspatial"; version="1.1.4"; sha256="0l77c6h845if5hfsjzvbdpysk04qbnpbb19g6zggrg3fxrqp1wh8"; depends=[abind ggplot2 glue rlang rosm scales sf tibble tidyr]; }; + ggspectra = derive2 { name="ggspectra"; version="0.3.6"; sha256="0zxw8fc8kaadklyyhm1j6qajgq79hjskj1c0chlinkvsg417c5hl"; depends=[dplyr ggplot2 ggrepel lubridate photobiology photobiologyWavebands scales tidyr]; }; ggstance = derive2 { name="ggstance"; version="0.3.4"; sha256="0aqz3dn02cgij018a4sglqwrwr9dzzj12l8xr1064q7hfd4f64m1"; depends=[ggplot2 plyr rlang withr]; }; - ggstar = derive2 { name="ggstar"; version="0.0.4"; sha256="02mvbp3pdx90b36nwpm975h0c11vza9177h3pym9nqxyx2dp72qa"; depends=[ggplot2 gridExtra scales]; }; - ggstatsplot = derive2 { name="ggstatsplot"; version="0.4.0"; sha256="01hyrhpbz5ggpy7r26z9dgfc56972kzj8x8awvsr634l522lwa7g"; depends=[broomExtra correlation cowplot dplyr ggcorrplot ggExtra ggplot2 ggrepel ggsignif groupedstats insight ipmisc pairwiseComparisons paletteer purrr rlang statsExpressions tidyr]; }; + ggstar = derive2 { name="ggstar"; version="0.0.9"; sha256="1yixq9384h7m8xqkl8gcr0iai8f3a3yfa0yd34ahjzjs893x34vy"; depends=[ggplot2 gridExtra scales]; }; + ggstatsplot = derive2 { name="ggstatsplot"; version="0.5.0"; sha256="06zl57pbd3szbkbx6qpp4cwl9r5xbq73vvhnckf6c2dy5f8i1m29"; depends=[broomExtra correlation cowplot dplyr ggcorrplot ggExtra ggplot2 ggrepel ggsignif groupedstats insight ipmisc pairwiseComparisons paletteer parameters purrr rlang statsExpressions tidyr]; }; + ggstudent = derive2 { name="ggstudent"; version="0.1.1-1"; sha256="0qs27b4lksaaaspavkycbzf8cfjxjli7xrfjby71sl0lca3fwm1g"; depends=[dplyr ggplot2]; }; ggswissmaps = derive2 { name="ggswissmaps"; version="0.1.1"; sha256="0is48x6k2p5dgj9q4km0dv33a9pcpfhlai9vz295y3acpyrkmnn4"; depends=[ggplot2]; }; ggtern = derive2 { name="ggtern"; version="3.3.0"; sha256="12lxmql9zspglp0baqp419l0vgilrf8lyxsza142bfyvmdbhh6d3"; depends=[compositions ggplot2 gridExtra gtable hexbin latex2exp lattice MASS plyr proto scales]; }; + ggtext = derive2 { name="ggtext"; version="0.1.0"; sha256="1jwj1kp5v78xij3mh0q96mvrccdkv81fzcfb9xdp3yysdz2pr2vr"; depends=[ggplot2 gridtext rlang scales]; }; ggthemes = derive2 { name="ggthemes"; version="4.2.0"; sha256="0rrkzfggc1nlda1w1lbqdycx6nawxbkac1szhvkwrqlzh6agxcsv"; depends=[ggplot2 purrr scales stringr tibble]; }; - ggupset = derive2 { name="ggupset"; version="0.2.1"; sha256="1hqd1csli8iifxdghkvbyrjal7h4dd92ya287llaa2v4wdsqa1hm"; depends=[ggplot2 gtable rlang scales tibble]; }; + ggupset = derive2 { name="ggupset"; version="0.3.0"; sha256="079a1fghhbxhkx42ac0n5chmh07i60m2pkdk76frqbbmwrw7inx4"; depends=[ggplot2 gtable rlang scales tibble]; }; ggversa = derive2 { name="ggversa"; version="0.0.1"; sha256="0xqn8iznrm8q30pxwka88wi1z7lndi6lm12rq6ngcaxf294fbz01"; depends=[]; }; ggvis = derive2 { name="ggvis"; version="0.4.5"; sha256="091i9f17912j8qcyxppjgwzjnyqj7769ixs9d2gjg6f2clskqdw2"; depends=[assertthat dplyr htmltools jsonlite lazyeval magrittr shiny]; }; ggvoronoi = derive2 { name="ggvoronoi"; version="0.8.3"; sha256="04dv33vnip0rrli1diq43v7vhr86bmxjdyxjbxz5x4371kbb312j"; depends=[deldir ggplot2 raster rgeos sp]; }; @@ -8458,18 +8754,20 @@ in with self; { gh = derive2 { name="gh"; version="1.1.0"; sha256="1bc9bn1078s664hc806dh0y1ncxif77q479rfmxfir9z7hwaz7yy"; depends=[cli httr ini jsonlite]; }; ghibli = derive2 { name="ghibli"; version="0.3.2"; sha256="0762dy3x7w0q1swag2lh33cpqdr9bbqw0963ymdpnchawdh5m50z"; depends=[prismatic]; }; ghql = derive2 { name="ghql"; version="0.1.0"; sha256="19awg98r2hwwwwrwh0166y8ij1clf58vrf02i8fhhfzddx3an6bz"; depends=[crul graphql jsonlite R6]; }; - ghyp = derive2 { name="ghyp"; version="1.6.0"; sha256="10v35slafbnxhjbv30vi784zw3jp1zaz4pp65jb9nw4f0vch3anc"; depends=[MASS numDeriv]; }; - gibble = derive2 { name="gibble"; version="0.3.0"; sha256="19sj32jbq12a8zf03a39yqj8jln53nhb4b2v3khbq60nr9bxlm1r"; depends=[dplyr rlang tibble]; }; + ghyp = derive2 { name="ghyp"; version="1.6.1"; sha256="02xiznl1v0fksqwyvjg8075qbiy29y1h1q8cr3lsbr95h8iyzqfh"; depends=[MASS numDeriv]; }; + ghypernet = derive2 { name="ghypernet"; version="1.0.0"; sha256="1c2zphpyrjhvzsqnqshj1z955h69k4qpd7a3x174r72y47pqw5yx"; depends=[dplyr extraDistr numbers plyr purrr reshape2 rlang rootSolve]; }; + gibble = derive2 { name="gibble"; version="0.4.0"; sha256="19il4si7ch5jr7plr8qwv7jrc5kfkxmh5jrcdvbn688gxcnv7bs0"; depends=[dplyr rlang tibble]; }; gibbs_met = derive2 { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; }; + gif = derive2 { name="gif"; version="0.1.0"; sha256="119d7q9xs6xpncv1r2w008kld9z07ckyj1kja9b8n2lnlb8532pk"; depends=[MASS Matrix Rcpp RcppEigen]; }; gifski = derive2 { name="gifski"; version="0.8.6"; sha256="00w4bzp0rrp4isy1rnxs6g1q07r3wndadk3mqdrxk2wxi7jmghna"; depends=[]; }; gifti = derive2 { name="gifti"; version="0.7.5"; sha256="1y64bc33b5f64a4khp916s9zb7kbb24xgdg3pdlh0f8m6zrbmp4a"; depends=[base64enc R_utils xml2]; }; - gim = derive2 { name="gim"; version="0.28.0"; sha256="1m9pb3dcphyjmadxr87lrd4fb2jacrx2mmcgrvqzc16gfm66n6d5"; depends=[numDeriv]; }; + gim = derive2 { name="gim"; version="0.33.1"; sha256="1km8pyr1qfzffm33ihhlgvc0qxgxxfi161vkrz77d1b7jkpdyxjj"; depends=[numDeriv]; }; gimme = derive2 { name="gimme"; version="0.7-1"; sha256="117157nyyyzb102cs2in7s44dl3v6d0aqbfyybq4rqb5cqqmfsvj"; depends=[data_tree igraph imputeTS lavaan MIIVsem nloptr qgraph]; }; gimmeTools = derive2 { name="gimmeTools"; version="0.1"; sha256="1g170rz3c3qx27yy67f7xab4gkm0pbbvwlwkcsczfxphad609ryl"; depends=[easycsv magrittr miniUI rhandsontable rintrojs rstudioapi shiny shinyjs shinyWidgets]; }; gimms = derive2 { name="gimms"; version="1.1.3"; sha256="0ij252zz75nfngh5idzznrdi4jn1ymbn24s6qilpf2qf8zilh89i"; depends=[curl Kendall ncdf4 raster zyp]; }; giphyr = derive2 { name="giphyr"; version="0.2.0"; sha256="0273f7lama8bhaalafs66m6ksp32vx0j6rmh1qr4484i7wkmdfqn"; depends=[dplyr httr miniUI purrr rstudioapi shiny tibble]; }; - gistr = derive2 { name="gistr"; version="0.5.0"; sha256="07k9p5sfy0k45frx63dwp6pk3gyh5zdv79f4knsciakk6xq9ds59"; depends=[assertthat dplyr httr jsonlite knitr magrittr rmarkdown]; }; - git2r = derive2 { name="git2r"; version="0.26.1"; sha256="0dbl845sahv2i641ncaf06w06djravwc5wknp9syzx0ad8l0kmhk"; depends=[]; }; + gistr = derive2 { name="gistr"; version="0.9.0"; sha256="0ac9ikrdg6i8xvlma0gizvsdva46408lk7hvsgkqirhy2ljy02hp"; depends=[assertthat crul dplyr httr jsonlite knitr magrittr rmarkdown]; }; + git2r = derive2 { name="git2r"; version="0.27.1"; sha256="1h1vfzym6hi1fqs9p5z5v0f4xldggr425frw8k6dsidah3qhg4h9"; depends=[]; }; git2rdata = derive2 { name="git2rdata"; version="0.2.1"; sha256="11mdalfgarqscb6yg0p9g4mwzwnbkq40migpv5sk0i3vdz0xpapp"; depends=[assertthat git2r yaml]; }; gitgadget = derive2 { name="gitgadget"; version="0.5.2"; sha256="0la0x3p50wk5wv2p4vkf3rh72psz3k18lcymxn354nqb7m1xdggs"; depends=[callr curl dplyr jsonlite markdown miniUI rstudioapi shiny shinyFiles usethis]; }; githubinstall = derive2 { name="githubinstall"; version="0.2.2"; sha256="0hqh86r2007hzdbm8rr0fwqhhsna7ji8sdgmdnrxkxraa5f2pfz3"; depends=[curl data_table devtools httr jsonlite mockery]; }; @@ -8477,8 +8775,9 @@ in with self; { gitlabr = derive2 { name="gitlabr"; version="1.1.6"; sha256="1p68w0q8mjpz2hr6ys1qbfw1y4b35hgs27kzfkzv9hfi1vxqfd1h"; depends=[arpr base64enc dplyr httr magrittr purrr stringr tibble yaml]; }; gitlink = derive2 { name="gitlink"; version="0.1.3"; sha256="1g34cyx35wlpq42alsayk69x708zxqgvbdndb7j6n1q0rm4vncvd"; depends=[htmltools rlang]; }; givitiR = derive2 { name="givitiR"; version="1.3"; sha256="0y2slhxhj7k413kjaydin9hq3x2xgx4cgjshdplwnmg3x2nakn31"; depends=[alabama rootSolve]; }; - gjam = derive2 { name="gjam"; version="2.3.1"; sha256="1mz4d0ivlrmas73wb8mcs6cw5f34ilakpr59mffyli4wkkplqf4k"; depends=[MASS RANN Rcpp RcppArmadillo]; }; + gjam = derive2 { name="gjam"; version="2.3.2"; sha256="0zlx4q4w09c4gcjjw3niy61nrfdrqb4h9f3x2sg33lqnhwkdddwk"; depends=[MASS RANN Rcpp RcppArmadillo]; }; gk = derive2 { name="gk"; version="0.5.1"; sha256="1hgxb1lp78pbnj22i7ryf46im301j05y7hh75z2fxvv5nqgg2v75"; depends=[Ecdat lubridate progress]; }; + gkgraphR = derive2 { name="gkgraphR"; version="1.0.1"; sha256="05bwcsg5w4231h4y0p4grkswgjnd3ygcnfsj72y2cxcjsnladylx"; depends=[httr ISOcodes jsonlite]; }; gkmSVM = derive2 { name="gkmSVM"; version="0.80.0"; sha256="0ljcga246ad0ql8x3drvrdsyp0f20mgp3p6lnl79xb76qgfdnm0p"; depends=[kernlab Rcpp ROCR seqinr]; }; glacierSMBM = derive2 { name="glacierSMBM"; version="0.1"; sha256="0117fzz2b1lccs0kkwz59w2yysi72j54yvz7373pz11w7rjds84f"; depends=[raster sp udunits2]; }; glamlasso = derive2 { name="glamlasso"; version="3.0"; sha256="1ynhl868kh25l8m04ln6ix31z9r26lrbr5ajprpq9yfhqs4l9ddc"; depends=[Rcpp RcppArmadillo]; }; @@ -8488,41 +8787,43 @@ in with self; { glasso = derive2 { name="glasso"; version="1.11"; sha256="02p3612rpydk195n2qr77lp1j2w8zsw1ckkk98c8angm4r5q8dsc"; depends=[]; }; glassoFast = derive2 { name="glassoFast"; version="1.0"; sha256="1sgmh4l06q7mrmgnimphpqgix4k4jzaj2l30kpmnf92caa2v7ngw"; depends=[]; }; glba = derive2 { name="glba"; version="0.2"; sha256="0ckcz6v6mfbv34s8sp086czhb5l58sky79k84332rrz6wj47p3md"; depends=[]; }; + glca = derive2 { name="glca"; version="0.1.1"; sha256="0xm67c0rizhm0rhhllr3jawzgsngvzgkcagankpklf035hk5wgrv"; depends=[MASS Rcpp]; }; glcm = derive2 { name="glcm"; version="1.6.5"; sha256="13my6y9jqd86cg5n74p4b8mqbdgwnanxx4qf1rrhm5jxf6sa31qm"; depends=[raster Rcpp RcppArmadillo]; }; gld = derive2 { name="gld"; version="2.6.2"; sha256="1wrw7i5bq7rb2ahadm57y9fmr697r7lp9ln7ajcd592b0nn60n4i"; depends=[e1071 lmom]; }; gldrm = derive2 { name="gldrm"; version="1.5"; sha256="1mbdxqjw6sa47kigwrjq1gn6vi36zhg9j2lck144iwa10ms0y9xp"; depends=[]; }; glinternet = derive2 { name="glinternet"; version="1.0.10"; sha256="15dikazmhs7md7j8p45f67h3947br18hsrjl74cjk10vazd0ihng"; depends=[]; }; gllm = derive2 { name="gllm"; version="0.37"; sha256="169y3yz947d8qdphqv2a6yrdash6v2h9jfvj2fk7rcpmz0r45kl6"; depends=[]; }; - gllvm = derive2 { name="gllvm"; version="1.2.1"; sha256="1zz1q8qxgpb9kxcdrylpgl36x3lq7gg12r0gjmhrry584y1adp59"; depends=[fishMod MASS Matrix mgcv mvabund mvtnorm RcppEigen statmod TMB]; }; + gllvm = derive2 { name="gllvm"; version="1.2.2"; sha256="194rm0zfrk8klgbpiv4rcfn57rvnwg6dafq91w9wy1vljp69xyjy"; depends=[fishMod MASS Matrix mgcv mvabund mvtnorm RcppEigen statmod TMB]; }; glm_deploy = derive2 { name="glm.deploy"; version="1.0.4"; sha256="1akklvbhz2pp0sv1hax1jq0s9ajbfv1597z643gh5l9hwizj2h9m"; depends=[Rcpp]; }; glm_predict = derive2 { name="glm.predict"; version="3.1-0"; sha256="16ahl6jvydmx48hzixv8whsr55w527k0a1xbic20crinblx0ncb4"; depends=[MASS nnet]; }; glm2 = derive2 { name="glm2"; version="1.2.1"; sha256="1byqlvpls23gzy7xlbs1kgfr4bsrmsrpc8rzzacf9czap1nlw39y"; depends=[]; }; - glmBfp = derive2 { name="glmBfp"; version="0.0-51"; sha256="15jm450j1f0nl7vqvpb2mwapdlvn7kq2kxf5s96x21siwsz7sssv"; depends=[coda Rcpp RcppArmadillo rms Runuran statmod survival]; }; + glmBfp = derive2 { name="glmBfp"; version="0.0-60"; sha256="1yv6db80k8lbchd35lqpf7jjn2ss9x6rrw4r04j3xz9y246lfvxz"; depends=[coda Rcpp RcppArmadillo rms Runuran statmod survival]; }; glmaag = derive2 { name="glmaag"; version="0.0.6"; sha256="1yk5bx1gyj97b5qjy30q1gsjlp9amklwf070i0129f8dj7vjyaf0"; depends=[data_table foreach ggplot2 gridExtra huge Matrix maxstat OptimalCutpoints plotROC pROC Rcpp RcppArmadillo shiny survival survminer]; }; - glmbb = derive2 { name="glmbb"; version="0.3"; sha256="12yabwswps0fmprh8nb9jdny9xrm13jvc0d9m3w04ppmsvalrmwl"; depends=[digest]; }; + glmbb = derive2 { name="glmbb"; version="0.4"; sha256="15w80lj3kdgbkp6k6g0jgxgg2q0i5sd57n0d3v56sm43cd2kcgqf"; depends=[digest]; }; glmc = derive2 { name="glmc"; version="0.3-1"; sha256="0x6jk2l5rpjkp5x815gpiwv8maa7mhmy6m8gaxbv1cbn3zyccynn"; depends=[emplik]; }; glmdisc = derive2 { name="glmdisc"; version="0.5"; sha256="0985j4gh4069pwcf3spsi8czq6xn9vhajliprxjwlv3xbisjcf8s"; depends=[caret gam MASS nnet Rcpp RcppEigen RcppNumerical]; }; glmdm = derive2 { name="glmdm"; version="2.60"; sha256="09vljki24fccqkvxkmg2i6a8pxqhfwm155b41m2q51lqaq29bfw7"; depends=[]; }; glmertree = derive2 { name="glmertree"; version="0.2-0"; sha256="0lfn6dap38i6cnfy4gdap13aq81h9cm3bip7ci57q9br9b00x7ib"; depends=[Formula lme4 partykit]; }; - glmglrt = derive2 { name="glmglrt"; version="0.1.0"; sha256="0y3bwf6lg6wh2kq5p4flmvnc15c87w4xgxb0qnbvwmdnabsjd7zh"; depends=[MASS parameters]; }; + glmglrt = derive2 { name="glmglrt"; version="0.2.2"; sha256="1954ywshnqzr7h77wshf63y3zx3ra8mrfabg5dqjhkgv4rsk3h1y"; depends=[MASS parameters]; }; glmgraph = derive2 { name="glmgraph"; version="1.0.3"; sha256="16sq6i7kbw20nvwikpa02z3pb7wqw3270j6ss7f8sgf548skhmx0"; depends=[Rcpp RcppArmadillo]; }; glmlep = derive2 { name="glmlep"; version="0.2"; sha256="0rq2vxbr732r725pn8qdvppxcrhjhyvlr550svfgy1inq985c1w4"; depends=[]; }; + glmm = derive2 { name="glmm"; version="1.4.2"; sha256="03jgj3ssza2j2cg6nl4pbbmj57s951mxbas32cg5789zh9hjbygg"; depends=[doParallel foreach itertools Matrix mvtnorm trust]; }; glmmEP = derive2 { name="glmmEP"; version="1.0-3.1"; sha256="0fql85m0mxn58jh3mgrcw56bb4dx7amrz39ngqrljwi5pv5i7aj4"; depends=[lme4 matrixcalc]; }; glmmLasso = derive2 { name="glmmLasso"; version="1.5.1"; sha256="1az9vdnyqyrfn1q7zrn6x4ywx77b0vg65cni45x37b0ybkwpis39"; depends=[Matrix minqa]; }; - glmmML = derive2 { name="glmmML"; version="1.1.0"; sha256="121iclp86nfm9mybvfwascs937i0z2mbv982hn894q6g7jkqiw1l"; depends=[]; }; - glmmTMB = derive2 { name="glmmTMB"; version="1.0.1"; sha256="0sdx1q7wc7895xh8747r4p0wkij0xjgn5ij62ipi9423zd0sr0mm"; depends=[lme4 Matrix nlme RcppEigen TMB]; }; + glmmML = derive2 { name="glmmML"; version="1.1.1"; sha256="1m2dcw522nd78x7z7la7a4cii3030s0bl4sqxbvkxn1k15jf4pr5"; depends=[]; }; + glmmTMB = derive2 { name="glmmTMB"; version="1.0.2.1"; sha256="1a35hxcxz1cdm3zd5s7fyjaw2qs00hkacgr7h9130amygc1262ab"; depends=[lme4 Matrix nlme RcppEigen TMB]; }; glmmboot = derive2 { name="glmmboot"; version="0.5.1"; sha256="1q4lp5s00vmymvln4qcsnfgcn918dsvkdhq16h0f94yiqczadsb9"; depends=[]; }; - glmmfields = derive2 { name="glmmfields"; version="0.1.3"; sha256="1sygppwm58hvwj95nlyz59cjlnkrq82kpws6izbivl7p6wb06lil"; depends=[assertthat BH broom cluster dplyr forcats ggplot2 loo mvtnorm nlme Rcpp RcppEigen reshape2 rstan rstantools StanHeaders]; }; + glmmfields = derive2 { name="glmmfields"; version="0.1.4"; sha256="0gnb2s34xz7cjyaa2w2wq7n6c5016a14mc03kalvwdv3f7b98zan"; depends=[assertthat BH broom broom_mixed cluster dplyr forcats ggplot2 loo mvtnorm nlme Rcpp RcppEigen reshape2 rstan rstantools StanHeaders tibble]; }; glmmsr = derive2 { name="glmmsr"; version="0.2.3"; sha256="1fbg5zji0xjr9q1yc6phsp37nsrj7nfs8yiri0j9s84wzgwjili1"; depends=[BH lme4 Matrix numDeriv R6 Rcpp RcppEigen]; }; - glmnet = derive2 { name="glmnet"; version="3.0-2"; sha256="0b3nnfzp8dxcdkvxr0yvy6d58yk3xg4kz1wqa42bxqppbakmd2gl"; depends=[foreach Matrix shape]; }; + glmnet = derive2 { name="glmnet"; version="4.0-2"; sha256="0qdswxvdwjcnw0by15p9yfzw8laq4f2j0ivpma6q8c5zywldpxxc"; depends=[foreach Matrix shape survival]; }; glmnetUtils = derive2 { name="glmnetUtils"; version="1.1.5"; sha256="0q8h3pniblcgvghffsiz0qqipq8cpln4dg8nwg0k4m1j2n6h582h"; depends=[glmnet Matrix]; }; - glmnetcr = derive2 { name="glmnetcr"; version="1.0.5"; sha256="0s21kaky23wgm0nbgncrg6xiwnp5x5s2zcv854493rrclx2s6r5w"; depends=[glmnet]; }; + glmnetcr = derive2 { name="glmnetcr"; version="1.0.6"; sha256="0cs0yj2js0920iggcw2vci5y9hnsm3hd7wpd7mwnx8mszwrklawg"; depends=[glmnet]; }; glmpath = derive2 { name="glmpath"; version="0.98"; sha256="1jbiqqd1s93i941dhyyx50zlgwavhyjfw8bx13z4gz05rdvi4gn8"; depends=[survival]; }; glmpathcr = derive2 { name="glmpathcr"; version="1.0.8"; sha256="00hbgp1kdbvihqvx03vv6gq32whrkcfq3n32bbj3cda85dnivlwq"; depends=[glmpath]; }; - glmpca = derive2 { name="glmpca"; version="0.1.0"; sha256="19fiivv72nnz4cax5nibcpzm47vma54h3myxcb9bhz3rm04b5srv"; depends=[]; }; + glmpca = derive2 { name="glmpca"; version="0.2.0"; sha256="02xjf0gg52925hw9nw2j0znfmzfzfwbv0fxjl9d2fy9j63drr2h4"; depends=[MASS]; }; glmtlp = derive2 { name="glmtlp"; version="1.1"; sha256="01kyw0xipyr9z7x9z41wz7rqargzqd8s8ri34ffdvd3ggrdznl0p"; depends=[glmnet]; }; glmtree = derive2 { name="glmtree"; version="0.1"; sha256="03baxmabfpyl89a5dqk16fhvcgw58daji3fkqc35yy6hzsiwg04q"; depends=[caret dplyr magrittr partykit]; }; - glmulti = derive2 { name="glmulti"; version="1.0.7.1"; sha256="0ph47c3f1bqljmj2jdaaydqf0vhn5rld9257sn4x6jicy550l6r2"; depends=[rJava]; }; + glmulti = derive2 { name="glmulti"; version="1.0.8"; sha256="0zviahj99645s1xs2f9z7rnv95x4rdz7mfwzy3qjfw46yqpfj5cn"; depends=[leaps rJava]; }; glmvsd = derive2 { name="glmvsd"; version="1.4"; sha256="03axsn85axs4d6fdlr3wcdwq6qa4991svkqc7k9r52kk1ar0w5zz"; depends=[brglm glmnet MASS ncvreg]; }; glmx = derive2 { name="glmx"; version="0.1-1"; sha256="06v2qxgr16w0qnfhjr9vdqcad5v475pwg2yhw0i236yzqbnsssh6"; depends=[Formula lmtest MASS sandwich]; }; globalGSA = derive2 { name="globalGSA"; version="1.0"; sha256="1f3xv03m6g2p725ff0xjhvn2xcfm7r7flyrba080i4ldy6fd8jg8"; depends=[]; }; @@ -8533,7 +8834,7 @@ in with self; { glogis = derive2 { name="glogis"; version="1.0-1"; sha256="1sbvcg5slvd2c7fasvbj534x36rh11zq3mxv5z0jwpqd6h1xadmd"; depends=[sandwich zoo]; }; glpkAPI = derive2 { name="glpkAPI"; version="1.3.2"; sha256="1qwq6vbx1symly6k72xgj5qzqw7j6wdsgiflm649pdxnisfgzh00"; depends=[]; }; glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; }; - glue = derive2 { name="glue"; version="1.4.0"; sha256="1hb9j2519jv9zgkgjb25hnqi22i7zxnaksqd16m4nxa1f6gl0v7a"; depends=[]; }; + glue = derive2 { name="glue"; version="1.4.1"; sha256="1j1va4vi3g9sl0cyjdwxvh5lvh10x8k9qvnsr9zyxddcbk9qgdpq"; depends=[]; }; gluedown = derive2 { name="gluedown"; version="1.0.2"; sha256="1vq5zgwlwj5rzdwj7z9ypnvj2fw9m653bdbivb2hx2z2hl8qwfp9"; depends=[glue]; }; gluvarpro = derive2 { name="gluvarpro"; version="4.0"; sha256="09l9yincr1k5j9wnj3zvfzsffjh3r54aa8fn0ik8vhlbq13ag8kp"; depends=[ggplot2 gridExtra pracma scales tidyr zoo]; }; gmDatabase = derive2 { name="gmDatabase"; version="0.5.0"; sha256="0prap4a8pvylmvakd2ii87jz9bqf0vvfsxdi4iwa40nx444hqhx2"; depends=[DBI digest foreach RMySQL shiny]; }; @@ -8541,36 +8842,36 @@ in with self; { gmailr = derive2 { name="gmailr"; version="1.0.0"; sha256="0wgh428qrwn6rxkcv9xmpya4ygrmc5pblxp0fw0ddgwbl99dhhi5"; depends=[base64enc crayon gargle httr jsonlite lifecycle magrittr mime rematch2]; }; gmapsdistance = derive2 { name="gmapsdistance"; version="3.4"; sha256="1hazf6xb4ja6h2lrl63kbd78wzny9sljiid9rq1r3szn3l1mc7dn"; depends=[RCurl XML]; }; gmat = derive2 { name="gmat"; version="0.2.1"; sha256="035x8b982qk3ik9qhxa9jhkczmafix6nbpbz0r5smby6q6bhj6jz"; depends=[gRbase igraph]; }; - gmediation = derive2 { name="gmediation"; version="0.1.1"; sha256="0md4h298vqw67qrjcaia6xz8s7akdpcmxa83irm12qgbh56a5rpr"; depends=[MASS plyr VGAM]; }; gmfd = derive2 { name="gmfd"; version="1.0.1"; sha256="03sag09x7pjyzsp6w1z06108ig068krmw75064cnl3pqfvfyjfgr"; depends=[]; }; - gmm = derive2 { name="gmm"; version="1.6-4"; sha256="15dwf3dgr88n3s1i4lqmv75vfmrc85kdhhgs2gprqkhpgprmzb83"; depends=[sandwich]; }; - gmnl = derive2 { name="gmnl"; version="1.1-3.1"; sha256="01mman2nh7wzlhh89iwaskz9n15v3p5llid5557dwmqn8ybzsdvx"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; }; + gmm = derive2 { name="gmm"; version="1.6-5"; sha256="12lzgrrir2hlnqlq42s2ddj8yvra78br3icmz03ngyk14a4r0w5i"; depends=[sandwich]; }; + gmnl = derive2 { name="gmnl"; version="1.1-3.2"; sha256="01pviab3gyvjdlv5jy7wzp33909znhpn47kar55bwkm6gm3bdlg8"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; }; gmodels = derive2 { name="gmodels"; version="2.18.1"; sha256="0s8kd8krqk4kwv2zqxpsfy3w8qdwf5naf4b5l383vidq9sil0qb2"; depends=[gdata MASS]; }; - gmp = derive2 { name="gmp"; version="0.5-13.6"; sha256="0j2sz2nw41y9306rl1b8hbn0spz7453z5iawcq0bvslyrhc1d9ir"; depends=[]; }; + gmp = derive2 { name="gmp"; version="0.6-0"; sha256="1c9vpr6j6h5f6dm9l535nscl66rvr8sba5az2kswjhmzwb9xpjxc"; depends=[]; }; + gms = derive2 { name="gms"; version="0.4.0"; sha256="1m7bhy4vsz6l09pal9ibjlskmbyjmc29hqwjim1x8yansd5bxpzv"; depends=[dplyr rlang stringr yaml]; }; gmt = derive2 { name="gmt"; version="2.0-1"; sha256="1g1sj9gq3h3s0pdcfvzg7iifkns5azn3pa83if0d3yzc28cjf0yz"; depends=[]; }; gmvarkit = derive2 { name="gmvarkit"; version="1.1.3"; sha256="08vfyad8fs6zpwgvxs2qrvnbii824fx4yxghrvcqx25x1j71vvnl"; depends=[Brobdingnag mvnfast pbapply]; }; gnFit = derive2 { name="gnFit"; version="0.2.0"; sha256="0cji4zjslh18dfj0l827r6br4hx2f0akiaxrg7fhhyyyhgdcjnsm"; depends=[ismev rmutil]; }; gnlm = derive2 { name="gnlm"; version="1.1.1"; sha256="1krbz791l5qc06sh6my0bkq420b5afncw87lhyx1yiml2yg46zrk"; depends=[rmutil]; }; gnm = derive2 { name="gnm"; version="1.1-1"; sha256="1lddsdsg43wpg681s906i4xqqfbjdd1qb9ml5dfprb02i1806aa2"; depends=[MASS Matrix nnet qvcalc relimp]; }; - gnmf = derive2 { name="gnmf"; version="0.7.1"; sha256="1vbcsxg61mlsdir8szd0rdxfswr7kr6a07750ar2l9b4rkg3yfqz"; depends=[]; }; gnn = derive2 { name="gnn"; version="0.0-2"; sha256="0sh9b6d0zvrml7d1bnirxld2lwrgrd7ma3ky7xl71kis0x3fjdq9"; depends=[keras qrng tensorflow]; }; gnorm = derive2 { name="gnorm"; version="1.0.0"; sha256="17h43qwb07wk5hiif89k6dgn6bbdsqfy2jy3k5blbdhhp3b9jcqp"; depends=[]; }; gnumeric = derive2 { name="gnumeric"; version="0.7-8"; sha256="0iwl00mzsg8h8q67bjp6485idjlmj24362b1rbmkifckss8hrc98"; depends=[XML]; }; goeveg = derive2 { name="goeveg"; version="0.4.2"; sha256="0k9pyph065x8wp452x8kz28ikhsbrm80ln4yssmcgqm7085dyyya"; depends=[cluster fields Hmisc mgcv vegan]; }; gof = derive2 { name="gof"; version="1.0.1"; sha256="0m9g3g5aw8wiz6am56ms2a5ipyk68gxd00bgs840lprgfdd4iw1n"; depends=[lava mets Rcpp RcppArmadillo]; }; - gofCopula = derive2 { name="gofCopula"; version="0.3-2"; sha256="068l2xik9i7z58dcj0nyp24w7lh97nimdfcs74cyfv15av23x0n7"; depends=[copula crayon doSNOW foreach MASS numDeriv progress R_utils SparseGrid VineCopula yarrr]; }; + gofCopula = derive2 { name="gofCopula"; version="0.3-3"; sha256="1hqna4m9b2kcksfc7r0rmi1wqw6p4a1miinm2548gpbiz5ai7ni2"; depends=[copula crayon doSNOW foreach MASS numDeriv progress R_utils SparseGrid VineCopula yarrr]; }; gofastr = derive2 { name="gofastr"; version="0.3.0"; sha256="02jn4xbbafl7siwvkqns1818wmw813x9cvqfcnpnmcippiqhrb0b"; depends=[data_table quanteda slam SnowballC tm]; }; - goffda = derive2 { name="goffda"; version="0.0.6"; sha256="0j2fx3vzd4rda4hlhgkkcq1rgn79rah2r5dkx2rikl3rkfjjj6yi"; depends=[fda_usc glmnet ks Rcpp RcppArmadillo]; }; - goft = derive2 { name="goft"; version="1.3.4"; sha256="15n1av7r6w8hihxlgw9pd570qgrlcprkkacln15chvjs3b0i60la"; depends=[fitdistrplus]; }; + goffda = derive2 { name="goffda"; version="0.0.7"; sha256="183hz0x0d9qh8v2k2qa5ii1g8hpmgl9bpd3dvb9f5v58zmxhgl8h"; depends=[fda_usc glmnet ks Rcpp RcppArmadillo]; }; + gofgamma = derive2 { name="gofgamma"; version="1.0"; sha256="00wda3fandrd1kkm20fb615g5fd0wykk3s0xn0xh9da28q08yh2m"; depends=[]; }; + goft = derive2 { name="goft"; version="1.3.6"; sha256="0ag1bks44hm787sgbab70ab9q0dzbfsx70ldprafjx92gg1cqv5s"; depends=[fitdistrplus sn]; }; goftest = derive2 { name="goftest"; version="1.2-2"; sha256="0ivnkqhv5xgiv05dm648nngacymd8x8g0fyppv3bc0mhcqk9k5z4"; depends=[]; }; gogarch = derive2 { name="gogarch"; version="0.7-2"; sha256="03gpl73zc6kx4gni59xbg7b38dkpd7p4c7kvlqm46f58j257viik"; depends=[fastICA fGarch]; }; goldi = derive2 { name="goldi"; version="1.0.1"; sha256="191ac02bwrxr3khq6qirhxzfhv7pqfhqyg7jb473p5vwygpvc53l"; depends=[dplyr futile_logger magrittr Rcpp RcppArmadillo SnowballC tm]; }; golem = derive2 { name="golem"; version="0.2.1"; sha256="07g5sagdq1n5i24bc8pnx9y303adraqppq1j9lyd4n5q0phbgh2y"; depends=[attempt cli config crayon desc dockerfiler fs here htmltools jsonlite pkgload remotes rlang roxygen2 rstudioapi shiny testthat usethis yaml]; }; gomms = derive2 { name="gomms"; version="1.0"; sha256="1i9d5y28wrhal990x7xxy99v3z9y2pzlakj7wnynd3dpx5pqr0jj"; depends=[]; }; goodpractice = derive2 { name="goodpractice"; version="1.0.2"; sha256="08rnm8z0pry5mwpc7p37r6f2rd56dry9djpcvvs9yl170w56psx0"; depends=[clisymbols covr crayon cyclocomp desc jsonlite lintr praise rcmdcheck rstudioapi whoami withr xml2 xmlparsedata]; }; - googleAnalyticsR = derive2 { name="googleAnalyticsR"; version="0.7.1"; sha256="1px57a5kqmnlny11p0niak6096pz1q8jvd9xbyld99hrwicav13r"; depends=[assertthat dplyr googleAuthR httr jsonlite magrittr memoise purrr rlang tibble tidyr]; }; - googleAuthR = derive2 { name="googleAuthR"; version="1.1.1"; sha256="053s6n28cq35gn18ywipygw3bpwsi1qv6rr4vv2bi9q6sy6rb8q3"; depends=[assertthat digest gargle httr jsonlite memoise rlang]; }; - googleCloudRunner = derive2 { name="googleCloudRunner"; version="0.1.1"; sha256="0pdy9z3k2pz2vvp64g60ddigy5nvy3p9qwaqh2bxiw6vs5g4yaqs"; depends=[assertthat googleAuthR googleCloudStorageR httr jsonlite openssl yaml]; }; + googleAnalyticsR = derive2 { name="googleAnalyticsR"; version="0.8.0"; sha256="0zpnix2ql7p9l57iyv43yz1z4y5v7d5zi7yvs0z4i4yi5zgwqh60"; depends=[assertthat cli dplyr googleAuthR httr jsonlite magrittr memoise purrr rlang tibble tidyr]; }; + googleAuthR = derive2 { name="googleAuthR"; version="1.3.0"; sha256="0csycg3d8pk01rsnpvxjs7as7dwapladfjj4v170gwzskhjmfbg9"; depends=[assertthat cli digest gargle httr jsonlite memoise rlang]; }; + googleCloudRunner = derive2 { name="googleCloudRunner"; version="0.2.0"; sha256="00m1kwm4qr2xw7p8y3qal1si6yvlmhin0xsn9s0c8spjsrppb94l"; depends=[assertthat cli googleAuthR googleCloudStorageR httr jsonlite openssl usethis yaml]; }; googleCloudStorageR = derive2 { name="googleCloudStorageR"; version="0.5.1"; sha256="0sd6ca1ksv22avr5rcvkf5089f9igb8gqa83kidlc4xklaj6g92m"; depends=[assertthat curl googleAuthR httr jsonlite openssl yaml zip]; }; googleCloudVisionR = derive2 { name="googleCloudVisionR"; version="0.2.0"; sha256="1n4gkmnwp9wadxz1izggxnpcpm4bz3imhq5y3i2szr8zwafcqqjv"; depends=[data_table glue googleAuthR jsonlite purrr]; }; googleComputeEngineR = derive2 { name="googleComputeEngineR"; version="0.3.0"; sha256="1s0qvnijzkja645lim373swk815n3s1292q6sk3q36ss70q42cfg"; depends=[assertthat future googleAuthR httr jsonlite]; }; @@ -8578,31 +8879,32 @@ in with self; { googlePolylines = derive2 { name="googlePolylines"; version="0.7.2"; sha256="0czfsmf8gv38g950l9xkk67q9v53pk9xk9yr2flbdpm8nlrdpjz7"; depends=[BH Rcpp]; }; googlePrintr = derive2 { name="googlePrintr"; version="0.0.1"; sha256="19rm78x8qd61ilc6h1kn3dw63m6dfsckqkd3n76krvi0akgl72w5"; depends=[googleAuthR httr jsonlite]; }; googlePublicData = derive2 { name="googlePublicData"; version="0.16.1"; sha256="15hyslpqvncg21q581h061rfyg99y8lavqw1x8hzl7xzd49bn9r5"; depends=[readxl XML]; }; - googleVis = derive2 { name="googleVis"; version="0.6.4"; sha256="1f3yvcg8g78v8f49gc3q4pmpxqwdf10l2ixxx0bqqng5splz1jkx"; depends=[jsonlite]; }; - googledrive = derive2 { name="googledrive"; version="1.0.0"; sha256="08hz215zhprwnzlcja8jrp29al1j4ind1zq7cch90xj02wlcz8nc"; depends=[curl gargle glue httr jsonlite magrittr purrr rlang tibble uuid]; }; + googleVis = derive2 { name="googleVis"; version="0.6.6"; sha256="0zp21zj7mpdshvh5ah60nqdys2iapqk58ib93zpr8155fshwdxqn"; depends=[jsonlite]; }; + googledrive = derive2 { name="googledrive"; version="1.0.1"; sha256="0qbyl0wyrxmwn9jg0d2s7c1kmmvmx61qbyx3qby4js8dks70f1ls"; depends=[curl gargle glue httr jsonlite magrittr purrr rlang tibble uuid]; }; googleformr = derive2 { name="googleformr"; version="0.0.3"; sha256="0smykcjyqmk61ws5jk462l8x5hg0h9nwq55q5pqfgcq1j3yfniqh"; depends=[httr rvest xml2]; }; googlenlp = derive2 { name="googlenlp"; version="0.2.0"; sha256="0d0g18i3im2s5f14k69ym3vwf9a7zkaval3nwrip97xcl6kf4x9h"; depends=[dplyr httr jsonlite purrr readr rlang]; }; googler = derive2 { name="googler"; version="0.0.1"; sha256="1aayji3ncqxl58k29d93dbx05s9rp9bc63fl2cpl1cys7gilblxx"; depends=[jsonlite tibble]; }; googlesheets = derive2 { name="googlesheets"; version="0.3.0"; sha256="11q07nxys72wkxx9mawmjyf20gvwvrb7h3gpa73h6lgh2vgrwnv8"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tibble tidyr xml2]; }; - googlesheets4 = derive2 { name="googlesheets4"; version="0.1.1"; sha256="1vj6viw9mbmwn0gs9s9yr9lsjl83dlzf37g64qi4vr3p28vg5cjs"; depends=[cellranger curl gargle glue googledrive httr magrittr purrr rematch2 rlang tibble]; }; + googlesheets4 = derive2 { name="googlesheets4"; version="0.2.0"; sha256="0nkhhh4jg03f2d0iy1lmy6c8mfc3a7k6ixd8h3ngmcxw1g4pagbj"; depends=[cellranger curl gargle glue googledrive httr ids lifecycle magrittr purrr rematch2 rlang tibble vctrs]; }; googleway = derive2 { name="googleway"; version="2.7.1"; sha256="0axpr81p3gdp1nmfn000lk288sdn8z5qmzjvagdxqn5j44hq6sj1"; depends=[curl googlePolylines htmltools htmlwidgets jpeg jqr jsonlite magrittr scales shiny viridisLite]; }; - goric = derive2 { name="goric"; version="1.1-0"; sha256="1smjq9vljszgngs5i6x55jwg0imzc5gsfdqxzcs4541fp3pvk999"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; + goric = derive2 { name="goric"; version="1.1-1"; sha256="0cqgcgsh3hc2zzyrczw66bbb4gg5xfkjslmrszwxbbn4zl9rkhpn"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; gorica = derive2 { name="gorica"; version="0.1.0"; sha256="09b5i6r2s449gvk0vagvf7kd6y0pgr4cz7hdwplq01x246bhjs6q"; depends=[bain lavaan lme4 MASS mvtnorm quadprog]; }; - gotop = derive2 { name="gotop"; version="0.1.0"; sha256="1gak2yqj82d8h34mksy8ii28n7ga0qfi3709gc1xpg7ax1bgp83h"; depends=[htmltools jsonlite rmarkdown]; }; + gotop = derive2 { name="gotop"; version="0.1.1"; sha256="0jlybfhxjdv92mxm6r47yplnjy6h19sikbgr9n3nsiymcnz8q7ss"; depends=[htmltools jsonlite]; }; govStatJPN = derive2 { name="govStatJPN"; version="0.1"; sha256="03sywa7rl5rblvv370mfszz5ngp850qf32yydy1fdx10lv5amrfl"; depends=[]; }; - govdown = derive2 { name="govdown"; version="0.8.0"; sha256="0sfjpbpzpay9jw5fys8dkkfilw9r8yfj2xhb20pvjk3l6hrsjwvk"; depends=[rmarkdown]; }; - gower = derive2 { name="gower"; version="0.2.1"; sha256="007ivwn1nagpi26qq8iih1c2l61c53glvv60n90hi341ry8vwgxg"; depends=[]; }; + govdown = derive2 { name="govdown"; version="0.10.0"; sha256="0zkalxbalbaakyrxwd29yyfmzvdmpb9nfaqyqwj52v64nxgz1v4m"; depends=[rmarkdown]; }; + gower = derive2 { name="gower"; version="0.2.2"; sha256="0c9n921wn4hhlvjq96r4nkk96s5788376cbldr7y7bwz348200iz"; depends=[]; }; + goxygen = derive2 { name="goxygen"; version="1.0.3"; sha256="0825zl16ap0k3jqhrjw4hfsw97ils77jmf4yqq347k3bb8i3dm79"; depends=[citation gms pander stringi yaml]; }; gpairs = derive2 { name="gpairs"; version="1.3.3"; sha256="08m1ydrr239vnhjbl47mng3i2w9bqmd8fijrwsraq5ysvn826n27"; depends=[barcode colorspace lattice MASS vcd]; }; gpclib = derive2 { name="gpclib"; version="1.5-6"; sha256="11jjgg74l8hy9jz4jylhriqnzv8jcf12y1bkx22v29z3fhgkwkps"; depends=[]; }; gpg = derive2 { name="gpg"; version="1.2.2"; sha256="1qc7w4d6frp0j4yk0q7slkj1mps80bv78lixcpw1shgx48rp41kh"; depends=[askpass curl]; }; + gpindex = derive2 { name="gpindex"; version="0.1.2"; sha256="072f0l40j54b15wxla577rbg6basjzck5qmvmcbvbqfd2jmsm3cw"; depends=[]; }; gpk = derive2 { name="gpk"; version="1.0"; sha256="1zfhkqyypb24mhbj2zi9qy3gw0kqxvlp8j5ni3zm7k5rz1bnrygg"; depends=[]; }; gplm = derive2 { name="gplm"; version="0.7-4"; sha256="0apvj14nl5qbi4dhhdx5nih5lvjwfcipvr8cyk6xsz4r5gfr2iw4"; depends=[AER]; }; - gplots = derive2 { name="gplots"; version="3.0.3"; sha256="0hs6mk48i9yd43rg9wfjc2nxsjjwrnpifxqvxkv8ah18kvpd6xnp"; depends=[caTools gdata gtools KernSmooth]; }; + gplots = derive2 { name="gplots"; version="3.0.4"; sha256="15ip3v4xiqzbanf8bc5fj90cbwdgixr72aj5jrp34jfdzdx0gxwg"; depends=[caTools gdata gtools KernSmooth]; }; gpmap = derive2 { name="gpmap"; version="0.1.1"; sha256="00jhslbxbp6dgq7bw346hfpw0gans048vsn7chyzjhyr7ah5xrfg"; depends=[foreach ggplot2 isotone plyr]; }; gppm = derive2 { name="gppm"; version="0.2.0"; sha256="1n9is3xj52lsck2fiy9j320p2ca6ib36s251i7g3iz99a77b0ahh"; depends=[ggplot2 ggthemes MASS mvtnorm Rcpp rstan]; }; gprofiler2 = derive2 { name="gprofiler2"; version="0.1.9"; sha256="112hmmvdwg8xz90w1bsbzc55y4xi9jj4dqy0q4bsgp49x58r92rb"; depends=[crosstalk dplyr ggplot2 gridExtra jsonlite plotly RCurl tidyr viridisLite]; }; gptk = derive2 { name="gptk"; version="1.08"; sha256="0fk6c8f8fni4y2n2cbfwywlfyz74xlb8lx25wajsxr2v4x74pa7l"; depends=[fields Matrix]; }; - gpuR = derive2 { name="gpuR"; version="2.0.3"; sha256="1afbnrnk0hrsd3qa7gh269wxn1maq7dpi6wpjhhbp2gwr6100vqy"; depends=[assertive BH Rcpp RcppEigen RViennaCL]; }; gqlr = derive2 { name="gqlr"; version="0.0.2"; sha256="0gzhqyrbnz3qjzkr4slryrlfhlaxm474y9fahlj0sb0hvcx68pxj"; depends=[graphql jsonlite magrittr pryr R6]; }; gquad = derive2 { name="gquad"; version="2.1-1"; sha256="19k7cqp2j5vb6m9hxdm951wfjh6nsswb64pdz9g93ypcqrg02wa4"; depends=[ape seqinr]; }; grImport = derive2 { name="grImport"; version="0.9-3"; sha256="109mrdvq06xq3zgn9ngz0c7zzgqkv5zbpvsb2i636vmlk6y4dpkd"; depends=[XML]; }; @@ -8610,87 +8912,90 @@ in with self; { grabsampling = derive2 { name="grabsampling"; version="1.0.0"; sha256="031a4ak84k2mbhrmjbai3q8qnf2z3d9rp0xra67x74a99av9lzs9"; depends=[extraDistr ggplot2 ggthemes plyr reshape2]; }; gradDescent = derive2 { name="gradDescent"; version="3.0"; sha256="1jxgvnjw9qk5bkb0fw4kyks4vb9d1933jn79ry0w6956mq2xbb79"; depends=[]; }; grade = derive2 { name="grade"; version="0.2-1"; sha256="085hfvqn880yk19axdjv3z9jr33kls212vs172a8mzhnkallph1r"; depends=[]; }; - gradeR = derive2 { name="gradeR"; version="1.0.5"; sha256="1c7x16z1mn7ys63vdwpy8b2x21k35pbmnpl52h372pfrsvxxhb23"; depends=[testthat]; }; + gradeR = derive2 { name="gradeR"; version="1.0.7"; sha256="063l3wipfzdmh5mphs09f070pif36xp1ma1jvvn83385w3y2b9vd"; depends=[jsonlite testthat]; }; gradientPickerD3 = derive2 { name="gradientPickerD3"; version="0.1.0.0"; sha256="0b20iqfipr7migwk1fl4lvdf4ghprqivcgmchfshhr8q82hyd1q0"; depends=[htmlwidgets jsonlite shiny]; }; grainscape = derive2 { name="grainscape"; version="0.4.2"; sha256="0njwhjg1xz6cbibcdc00qpvii97rri0bm12g1cqf5yvrnax1wyh5"; depends=[ggplot2 igraph raster Rcpp rgdal sp]; }; - gramEvol = derive2 { name="gramEvol"; version="2.1-3"; sha256="0z2511zhs2gcdkwp29n6fpafhn49h69yi56nmrhh9zc8jqj1rwpa"; depends=[]; }; + gramEvol = derive2 { name="gramEvol"; version="2.1-4"; sha256="1am5nlnyawi4lybi10ag4fdhddvbwsdzrmr6f66bzspdpl4s26g9"; depends=[]; }; grangers = derive2 { name="grangers"; version="0.1.0"; sha256="15q8hv7p5g5m7v6lx6nq5394fa6p05xgawnsrn1v5aslmmbbzyvl"; depends=[tseries vars]; }; granova = derive2 { name="granova"; version="2.1"; sha256="161fznqlnwmw53abmg2n62lhxxda7400ljnadvcdvsm8f6kcjf80"; depends=[car]; }; granovaGG = derive2 { name="granovaGG"; version="1.4.0"; sha256="0khqlqc6jg9cpdq06g6jlpfjcw3m6rj40ipljfai8g1630ril6q4"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; }; grapes = derive2 { name="grapes"; version="1.0.0"; sha256="079b7w2xhb0a481s7qihhka0l9ydkjdph0865wjjkcbpr4775p26"; depends=[magrittr]; }; - graph4lg = derive2 { name="graph4lg"; version="0.3.0"; sha256="0sy8jd771r16hnzpal0di4w0qmjmdpgny7zj4xq1y2bnsnlhv5bh"; depends=[ade4 adegenet diveRsity doBy ecodist ggplot2 igraph Imap MASS Matrix mclust pegas raster Rdpack rgdal sf sp spatstat stringr tidyr vegan]; }; + graph3d = derive2 { name="graph3d"; version="0.1.0"; sha256="0l0a8zrjync34zjxp84ng8vmhlmfcirygqd2n4ydpxj690wravps"; depends=[htmlwidgets lazyeval]; }; + graph4lg = derive2 { name="graph4lg"; version="1.0.0"; sha256="0xc7g8b58wgz219g7fhy3jf0glb41vws9lx8bg21jqndzjmrql8h"; depends=[adegenet diveRsity ecodist foreign gdistance ggplot2 igraph MASS Matrix pegas rappdirs raster sf sp spatstat stringr tidyr vegan]; }; graphTweets = derive2 { name="graphTweets"; version="0.5.3"; sha256="0jf52lclwvqgybdj6fknzx046bh6jgwxvqs4c5g1ii8f2lsz9y07"; depends=[combinat dplyr igraph magrittr purrr rlang tidyr zeallot]; }; grapherator = derive2 { name="grapherator"; version="1.0.0"; sha256="071by9b8figbsf4g0f8a8mgcdksjksc57mnlgggilw7py1yjnjlh"; depends=[BBmisc checkmate deldir ggplot2 lhs reshape2 vegan]; }; graphframes = derive2 { name="graphframes"; version="0.1.2"; sha256="1bv7d0sggwab4rd486ayw9gkb5ja5p5fin5pn92xnrmz8cgwsfxq"; depends=[forge sparklyr tibble]; }; graphicalExtremes = derive2 { name="graphicalExtremes"; version="0.1.0"; sha256="1cc4xcb72yci2gq2zn3g1nh3ba802anpymm0hajdbz3kb0wz1gyn"; depends=[igraph matrixcalc mvtnorm Rdpack]; }; graphicalVAR = derive2 { name="graphicalVAR"; version="0.2.3"; sha256="1xd98irbh67a7vbj6a4arl51dnkj5c0c1mcmh1c1hsac8mdj29w0"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo]; }; - graphicsQC = derive2 { name="graphicsQC"; version="1.0-8"; sha256="12vg93xfmkv73i19vkb10q2qngmsxd3y42z3l6izdywbdc3cdfkg"; depends=[XML]; }; graphkernels = derive2 { name="graphkernels"; version="1.6"; sha256="1gn3ihqz7m0rdvvc2fp7hsgq583wh5cnz7200a2ff89xc04zs3dc"; depends=[igraph Rcpp RcppEigen]; }; - graphlayouts = derive2 { name="graphlayouts"; version="0.6.0"; sha256="1la016m37kp79zk8p1yx9kaha8y6d4w52w39h0mzv1mfsi6d75w0"; depends=[igraph Rcpp RcppArmadillo]; }; - graphon = derive2 { name="graphon"; version="0.3.3"; sha256="1jsjbyk1hbmdlgap3gaf1cdrrbgfccr4lgpdi7g3bzp3mjjbijh5"; depends=[Rdpack ROptSpace]; }; + graphlayouts = derive2 { name="graphlayouts"; version="0.7.0"; sha256="17lc75k8i3c696hfj44zj7j1a5sb0nap8spc5r98v7vd6xh4nii0"; depends=[igraph Rcpp RcppArmadillo]; }; + graphon = derive2 { name="graphon"; version="0.3.4"; sha256="06y8hz0z6rx6ii4p36js8f85vya3v2834pnghng8adk2ibdlsc1s"; depends=[Rdpack ROptSpace]; }; graphql = derive2 { name="graphql"; version="1.5"; sha256="0zi1l93yk5rlgdy4j2nph14w0h8kgvnbzk9fi2jfys8s3fz54ksr"; depends=[jsonlite Rcpp]; }; graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; }; - graphsim = derive2 { name="graphsim"; version="0.1.2"; sha256="12ck2svjwfl2zqyhzzm3h9a57hy3gklpbbw8j9nnmagskxags5x3"; depends=[igraph Matrix matrixcalc mvtnorm]; }; - gratia = derive2 { name="gratia"; version="0.3.1"; sha256="0jgbx0mzm4a31fy9r046n4q9pkzmjxbbnbh9jsrlvj811qyni7gb"; depends=[cowplot dplyr ggplot2 mgcv mvnfast purrr rlang tibble tidyr]; }; + graphsim = derive2 { name="graphsim"; version="1.0.1"; sha256="05v5jhb3fpd5vpb12b203mvs9lx25yhwfg5qavw6rc7pgj5z974i"; depends=[gplots igraph Matrix matrixcalc mvtnorm]; }; + gratia = derive2 { name="gratia"; version="0.4.1"; sha256="0gxqmnmcz1nlmmlhshfsz7cwjxcp2ha73bjgkb9s5wgwlflpng43"; depends=[cowplot dplyr ggplot2 mgcv mvnfast patchwork purrr rlang tibble tidyr vctrs]; }; graticule = derive2 { name="graticule"; version="0.1.2"; sha256="1yvrijvyjilfql72dxj32b3sczqv065zj61729wrrzn63xcifvmb"; depends=[raster sp]; }; - grattan = derive2 { name="grattan"; version="1.8.0.1"; sha256="113f4rsmmv9czc4khdfndxw5cxsiad7scqmnrfcj2ar03ybbp2gn"; depends=[assertthat data_table fastmatch forecast fy hutils ineq magrittr Rcpp rsdmx zoo]; }; - gravitas = derive2 { name="gravitas"; version="0.1.2"; sha256="1hgxr6yq98w3vfbl9h575bi7l2g10ahgdqcq06r3apksikfn6pc2"; depends=[dplyr ggplot2 ggridges ineq lubridate lvplot magrittr RColorBrewer rlang shiny stringr tibble tidyr tsibble]; }; - gravity = derive2 { name="gravity"; version="0.9.8"; sha256="1yx71gidv3ivjfip994ciaiwk2cvvm8z16yax4lwpwgl1fxj1p4k"; depends=[censReg dplyr glm2 lmtest magrittr MASS multiwayvcov purrr Rdpack rlang sandwich survival tibble tidyr]; }; + gratis = derive2 { name="gratis"; version="0.2.0"; sha256="1bbj1b9kamhbd3v8nxwipv5iz7vlhziqn77pzkzndm68dgkdi3bj"; depends=[doRNG dplyr foreach forecast GA magrittr mvtnorm polynom purrr rlang shiny shinydashboard tibble tsfeatures]; }; + grattan = derive2 { name="grattan"; version="1.9.0.0"; sha256="12vjqlmnymidkapa9zzbk1hcq6cac9669sdsrcaaqn3si0hq0i7l"; depends=[assertthat data_table fastmatch forecast fy hutils ineq magrittr Rcpp zoo]; }; + gravitas = derive2 { name="gravitas"; version="0.1.3"; sha256="11n85bdmigqasbq8c1amj1k7manfvs3gnax2ihsf2vp56s9c463p"; depends=[dplyr ggplot2 ggridges ineq lubridate lvplot magrittr RColorBrewer rlang shiny stringr tibble tidyr tsibble]; }; + gravity = derive2 { name="gravity"; version="0.9.9"; sha256="1x912mg7cnday7lji48mw9f5drd732qlnrq4d6d75s5pgfps91p6"; depends=[censReg dplyr glm2 lmtest magrittr MASS multiwayvcov purrr Rdpack rlang sandwich survival tibble tidyr]; }; grec = derive2 { name="grec"; version="1.4.1"; sha256="1vy3idjvayzx9j9pf5bv5bxycjca3w3c4x4lzzbrdi3c97508sa8"; depends=[imagine raster]; }; + greekLetters = derive2 { name="greekLetters"; version="0.0.7"; sha256="0r6c4y6dnd3mm5i7y5cy7xz3w2j7qkfkkvxg9ig138has6115gjj"; depends=[assertthat stringr]; }; greenclust = derive2 { name="greenclust"; version="1.1.0"; sha256="198ix55x8cl5wx09p6ahzy3bvig86mvqf2qywjfilp6b4hnjgk7l"; depends=[]; }; - gremlin = derive2 { name="gremlin"; version="0.1.0.1"; sha256="1qsjj910lmwdnmbn0fxakw713sk7myavgrmp5xm86my7cm866hmb"; depends=[Matrix]; }; + gremlin = derive2 { name="gremlin"; version="1.0.1"; sha256="1pi1bksxmjmzclppgbqqg93swf4d72d2mr8bsxv7ndcdjr69xd5r"; depends=[Matrix nlme]; }; gren = derive2 { name="gren"; version="0.0.1"; sha256="1wb5wwdjxi7q36md7xzmbw5lrggcgghkz3pmxipjpxw8kfv804xp"; depends=[glmnet Iso pROC Rcpp RcppArmadillo]; }; greport = derive2 { name="greport"; version="0.7-2"; sha256="1p5x4sar88ss8n1m0c73arac10mq4ircjad38kbin6l0nk9z1mh2"; depends=[data_table Formula ggplot2 Hmisc lattice latticeExtra rms survival]; }; greta = derive2 { name="greta"; version="0.3.1"; sha256="0wy1619drj8ir6r44xcliiirgibksd80gmjx21am2h580k0x0xq2"; depends=[coda future progress R6 reticulate tensorflow]; }; gretel = derive2 { name="gretel"; version="0.0.1"; sha256="1yyj4aing56f2vy0gshxwb623g9idg8k4701v3s53lqn4m2ybazk"; depends=[Rcpp ResistorArray]; }; + gretlR = derive2 { name="gretlR"; version="0.1.0"; sha256="0lpznicpjlvp5kkhmlfr4as7px545k416i3f54900jnc7xa7fm8p"; depends=[knitr]; }; grex = derive2 { name="grex"; version="1.9"; sha256="0s6nan76rrmh3yhgvzb7pqdrzx2w9px8ay4v9yiib4bamy9wmhpb"; depends=[]; }; - greybox = derive2 { name="greybox"; version="0.5.9"; sha256="15xpw17v5msnfrxi42w9jd1cb9jwzx2hgjq4v31pdrl5kdc2yn0w"; depends=[forecast lamW nloptr pracma Rcpp statmod]; }; + greybox = derive2 { name="greybox"; version="0.6.1"; sha256="0k50fa0s9bs763qk367sl5a4q524dwim8vvj4zxrqa805rqf561r"; depends=[forecast gnorm lamW Matrix nloptr pracma Rcpp statmod zoo]; }; greyzoneSurv = derive2 { name="greyzoneSurv"; version="1.0"; sha256="115i0d4fy4p4g4vd419hj9f23hi8cbiyfilgpgmag91ilr1xpcdp"; depends=[Hmisc survAUC survival]; }; - grf = derive2 { name="grf"; version="1.1.0"; sha256="0bm5r26iabpk2yjln5i14vlcv3kg3p9n8sv9q1xm9v33j0qda507"; depends=[DiceKriging lmtest Matrix Rcpp RcppEigen sandwich]; }; + grf = derive2 { name="grf"; version="1.2.0"; sha256="1i12a5sa1kg0jh50y0r77qy4fca3j1vqrnlblbh8ldpjy07sln47"; depends=[DiceKriging lmtest Matrix Rcpp RcppEigen sandwich]; }; gridBase = derive2 { name="gridBase"; version="0.4-7"; sha256="09jzw4rzwf2y5lcz7b16mb68pn0fqigv34ff7lr6w3yi9k91i1xy"; depends=[]; }; gridBezier = derive2 { name="gridBezier"; version="1.1-1"; sha256="1n5d6svxblcxpzf79px0qjxsydpwjpnfcagnwk35ljinyd0wv68z"; depends=[]; }; - gridDebug = derive2 { name="gridDebug"; version="0.5-0"; sha256="12zrl7p8p7071w5viymdipycja7a2arvy0aahgahd5nlx1k1gha0"; depends=[graph gridGraphviz gridSVG]; }; + gridDebug = derive2 { name="gridDebug"; version="0.5-1"; sha256="1x1bbyfbyyn13sw5pvnzns6mq57fyq2fywj8hx5k9rhqclzjqxyr"; depends=[graph gridGraphviz gridSVG]; }; gridExtra = derive2 { name="gridExtra"; version="2.3"; sha256="0fwfk3cdwxxim7nd55pn7m31bcaqj48y06j7an2k1v1pybk0rdl1"; depends=[gtable]; }; gridGeometry = derive2 { name="gridGeometry"; version="0.2-0"; sha256="0y7y1ld03cqpibmjssid6n3n8gf98hi9ngcfbkh6acyzck812bc7"; depends=[polyclip]; }; gridGraphics = derive2 { name="gridGraphics"; version="0.5-0"; sha256="0rlyc3xk8kfrfzbfd8n4javq3yxqd7lsfmi4q5n6s61srnrl6c1r"; depends=[]; }; gridGraphviz = derive2 { name="gridGraphviz"; version="0.3"; sha256="1jz0d6kc8ci55ffm6dns8bhak9xnaq7mg5mpv3fk53lircn7mwl5"; depends=[graph Rgraphviz]; }; - gridSVG = derive2 { name="gridSVG"; version="1.7-1"; sha256="03ra820lm0gydrvxmck658aaj3mqqkqrinxc134r5npl8bv4x2hg"; depends=[jsonlite XML]; }; - gridsample = derive2 { name="gridsample"; version="0.2.1"; sha256="062aryy26x07m31r6m0fj1zgnjhivlh1fikx9lv2rdgk0rh4yzz0"; depends=[data_table geosphere maptools raster rgdal rgeos sp spatstat spatstat_utils]; }; + gridSVG = derive2 { name="gridSVG"; version="1.7-2"; sha256="0vxhdz6a759q6q9lpmyjwkvrjr52dfz609jbwrd0pnfyffmmpzh0"; depends=[jsonlite XML]; }; gridsampler = derive2 { name="gridsampler"; version="0.6"; sha256="0wqpqg9c372sv8zqks6v93gawiyfghw58hn7m8q45dxpqm16ss3k"; depends=[BiasedUrn ggplot2 plyr reshape2 shiny shinyBS shinythemes]; }; gridtext = derive2 { name="gridtext"; version="0.1.1"; sha256="06rb3xn8zf9m1v8kam39a7cp6iaw4xpirwjvp0y99gx3q5ijf5d7"; depends=[jpeg markdown png Rcpp RCurl rlang stringr testthat xml2]; }; gripp = derive2 { name="gripp"; version="0.2.20"; sha256="0rshipm8rdynl19a4dsvvvlhkd0n4vjfkidwnv5iilc5ini7c4qr"; depends=[GA GenSA usethis]; }; + grizbayr = derive2 { name="grizbayr"; version="1.3.0"; sha256="13gwah8s47cybc8pm9vkxm35sbdblmi2p49qw0kr56mk2sfrglf8"; depends=[dplyr magrittr purrr rlang tibble tidyr]; }; grnn = derive2 { name="grnn"; version="0.1.0"; sha256="1dxcmar42g9hz4zlyszlmmnnsnja0gxfggav5jxv0gkp32rkd0wh"; depends=[]; }; + grobblR = derive2 { name="grobblR"; version="0.1.0"; sha256="186sawp9yd5idzs4wsk66szy0v6h5dc5kpq72539dck23isb6dsa"; depends=[dplyr ggplot2 glue gridExtra magrittr png purrr RCurl stringr tibble]; }; groc = derive2 { name="groc"; version="1.0.7"; sha256="1qi16br426z90d58130n47riy7q1lcq19zl585a001av4lrmmqzv"; depends=[MASS mgcv pls robustbase rrcov]; }; gromovlab = derive2 { name="gromovlab"; version="0.7-6"; sha256="02s7x23610dbpmrqh7pimspa10v3fnmj48fwmh0a6igd74rmj2mg"; depends=[ape cluster glpkAPI igraph quadprog]; }; groupICA = derive2 { name="groupICA"; version="0.1.1"; sha256="1wl828ligvvw55xic383gdn7aq4mbwsnkl4ym6f71jn5g3p36d0i"; depends=[MASS]; }; groupRemMap = derive2 { name="groupRemMap"; version="0.1-0"; sha256="1bfp746j0dx7kk44nyjqmimvgw14par9ayvqxnzldc05qsazjdwx"; depends=[]; }; - groupWQS = derive2 { name="groupWQS"; version="0.0.1"; sha256="1009lw80knvspphvzz3jhclyflm9s300n2048gb7lrrnam657016"; depends=[glm2 Rsolnp]; }; - groupdata2 = derive2 { name="groupdata2"; version="1.2.0"; sha256="119ianzcv5dwvdyfxmgm7qgv99zbanm1ikal0rxc70c5n5lagv83"; depends=[checkmate dplyr lifecycle numbers plyr rlang tibble]; }; + groupWQS = derive2 { name="groupWQS"; version="0.0.3"; sha256="1c5yrsfgkhbg1fcjbrilfmf0phjry5z34536yfizc8wbc7mmmj0c"; depends=[glm2 MASS rjags Rsolnp]; }; + groupdata2 = derive2 { name="groupdata2"; version="1.3.0"; sha256="01bp7y78vzli178cikkaj48yvik690irxgni77if9dg3rz63gxg5"; depends=[checkmate dplyr lifecycle numbers plyr purrr rlang tibble]; }; grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; }; groupedSurv = derive2 { name="groupedSurv"; version="1.0.4.1"; sha256="1kapz07hswpcvm9mmgc06l71f7ymx7aq816mzwca6cvccvqnrl5n"; depends=[BH doParallel foreach qvalue Rcpp RcppEigen]; }; - groupedstats = derive2 { name="groupedstats"; version="0.2.2"; sha256="0znxy8nshc3c95ninarsgxv3r894p4kk8k9sv7a5qkpw7v4fj2mm"; depends=[broomExtra dplyr glue haven ipmisc lme4 parameters purrr rlang sjstats skimr tibble tidyr]; }; + groupedstats = derive2 { name="groupedstats"; version="1.0.1"; sha256="1sry6ccvygx6whg1ls2bx4aqc056z1lil2f5hn5rh20hlsryv186"; depends=[broomExtra dplyr effectsize glue haven ipmisc lme4 parameters purrr rlang skimr tibble tidyr]; }; groupsubsetselection = derive2 { name="groupsubsetselection"; version="1.0.3"; sha256="118cj5xc8nbq4fs2gbzg1nhynixaflbl0si77gyy4ybw0drsz4nj"; depends=[]; }; grove = derive2 { name="grove"; version="1.1"; sha256="0fqsj5dx7py7cin3hvfkxglh8v3x0dwj6cxy4h5vbddjl687db5x"; depends=[Rcpp RcppArmadillo wavethresh]; }; growfunctions = derive2 { name="growfunctions"; version="0.14"; sha256="1pvyiw20fxm3l4giyq4iizc67yy36i6wq4ch2qyqg4mfd4bki2g4"; depends=[ggplot2 mvtnorm Rcpp RcppArmadillo reshape2 spam]; }; growth = derive2 { name="growth"; version="1.1.1"; sha256="05yxjlbv1i4ly8yp3aqbxzq1z2mp7sfx7xyqw48qsdv0acqai7jy"; depends=[rmutil]; }; - growthPheno = derive2 { name="growthPheno"; version="1.0-22"; sha256="0xhy6w8xcyavb10z5qnzc2bfzn158vmajrcm318s4afwm1ynqix5"; depends=[dae GGally ggplot2 Hmisc RColorBrewer readxl reshape]; }; - growthcurver = derive2 { name="growthcurver"; version="0.3.0"; sha256="0q7g00b9sxxlq8yscmmccr8r4mwzpc707arbrr46iii8ra9icvlb"; depends=[minpack_lm]; }; + growthPheno = derive2 { name="growthPheno"; version="1.0-26"; sha256="1niwlwrzz3d0r274nlk0fyx3hx6i7n7xg3ibd8s7cl2q4d2f8ic9"; depends=[dae GGally ggplot2 Hmisc RColorBrewer readxl reshape stringi]; }; growthmodels = derive2 { name="growthmodels"; version="1.2.0"; sha256="1wy5z77819s3daa0mifafcjfkggsq0ac522yagj86ml3vf7yqppj"; depends=[]; }; growthrate = derive2 { name="growthrate"; version="1.3"; sha256="1ak3yqlm7dnkdjlmikwa57qnf7yd9n1ixz36gv3shr252750x9cd"; depends=[clime Matrix mvtnorm]; }; growthrates = derive2 { name="growthrates"; version="0.8.1"; sha256="1ivids4qfyhi3k5l6mvi6bhajnbxhiqmm4qdcmmfrmzs8c59cvvm"; depends=[deSolve FME lattice]; }; grpSLOPE = derive2 { name="grpSLOPE"; version="0.3.0"; sha256="0v20v3rdjmz517rl86nkrsaa1dl2p49kdkgk7ynv92p2ib37wwga"; depends=[Rcpp]; }; - grplasso = derive2 { name="grplasso"; version="0.4-6"; sha256="0xr6plgnc3lp93rd4jk4dqjix8kgl8s2b68fh41k6jwd5y8d7pks"; depends=[]; }; + grplasso = derive2 { name="grplasso"; version="0.4-7"; sha256="0jf48ahc6d6biwx235dlvbk1papxkqbcnvxsr93p5047pjm02y3a"; depends=[]; }; grplassocat = derive2 { name="grplassocat"; version="1.0"; sha256="0pi5vq7yqg0ha91y6296ckshxyq3135cg6zcs9x6xba5m5024k4p"; depends=[grplasso]; }; - grpreg = derive2 { name="grpreg"; version="3.2.2"; sha256="12432rdyv6b837n3b6kwjrqsmx7bs6qdmyz02x4l956pwmp5g7z5"; depends=[Matrix]; }; + grpreg = derive2 { name="grpreg"; version="3.3.0"; sha256="0ns5xg5nmzq4nvzj3vy5xazxxzs36kqp056c8kcz1l4vcmi3rjfp"; depends=[Matrix]; }; grr = derive2 { name="grr"; version="0.9.5"; sha256="0arbcgrvhkwb5xk4nry1ffg2qj0v8ivhjghdr505ib4357g0c9i9"; depends=[]; }; grt = derive2 { name="grt"; version="0.2.1"; sha256="1dw5rjs82r82l6qryyyq9cczm770v4iv60d7pi1nb4b0733ndbd5"; depends=[MASS]; }; - gsDesign = derive2 { name="gsDesign"; version="3.0-1"; sha256="0cixg176ihbkwkcllabr2klc15cssdnfzwklf0q1wd23lmv6aj43"; depends=[ggplot2 plyr xtable]; }; + gsDesign = derive2 { name="gsDesign"; version="3.1.1"; sha256="17sm1rqvp39apjxb35mhq7rjv70nanqsihv4h5m7cyx8nkxmviyj"; depends=[dplyr ggplot2 mvtnorm plyr rlang tibble xtable]; }; gsEasy = derive2 { name="gsEasy"; version="1.3"; sha256="00471kfjb6zw3n4nbx3a91xjn748hw3xpl9pq5sgbrf6xg9gcf7c"; depends=[ontologyIndex Rcpp]; }; gsalib = derive2 { name="gsalib"; version="2.1"; sha256="1k3zjdydzb0dfh1ihih08d4cw6rdamgb97cdqna9mf0qdjc3pcp1"; depends=[]; }; gsarima = derive2 { name="gsarima"; version="0.1-4"; sha256="1ay3iamnvg7mbnl1xaxxcyic559bdnfspy883w2bwgy20yhr34yg"; depends=[MASS]; }; gsbDesign = derive2 { name="gsbDesign"; version="1.0-1"; sha256="0wb62y4fcca1qq27kgk59qxm1nx5njcs94cr8x1bsnk88z945p9p"; depends=[gsDesign lattice]; }; - gsbm = derive2 { name="gsbm"; version="0.1.0"; sha256="0slx4063fnys60mxa9gqdmza9h9pif3qqyjw7y5nfcm8p06ckdbn"; depends=[softImpute]; }; - gscaLCA = derive2 { name="gscaLCA"; version="0.0.2"; sha256="0s6rnyd632xq04pnyq1j3571qv7j5bzxir2nhk5jk9i8myf9fc9k"; depends=[devtools doSNOW fastDummies fclust foreach ggplot2 gridExtra MASS progress psych stringr]; }; + gsbm = derive2 { name="gsbm"; version="0.1.1"; sha256="1d8hg4xb5siy4x5vkl6ijblzm1lghhypd2mpg0msf5g0ximqsnpk"; depends=[RSpectra softImpute]; }; + gscaLCA = derive2 { name="gscaLCA"; version="0.0.5"; sha256="12zksjp0wh95qg7vxh22z652hk35r9sp0qxrms4y1laixa8vr71x"; depends=[devtools doSNOW fastDummies fclust foreach ggplot2 gridExtra MASS nnet progress psych stringr]; }; gscounts = derive2 { name="gscounts"; version="0.1-3"; sha256="1xcsvnam858l9am30mmqb6m0vcflijhli22ix8g56rcvfsh208q1"; depends=[Rcpp]; }; gset = derive2 { name="gset"; version="1.1.0"; sha256="1gingqw6la8n7mnl47wpz9sicxca4zi2m8p35n6cnihrniibhajc"; depends=[Hmisc MCMCpack mvtnorm]; }; gsheet = derive2 { name="gsheet"; version="0.4.5"; sha256="0b8q44cqkjfy6vnffm94czq4ag8xfbxik52026ahq95kcf9v2j91"; depends=[httr stringr]; }; @@ -8699,28 +9004,30 @@ in with self; { gsloid = derive2 { name="gsloid"; version="0.1.0"; sha256="1ma5si86ynfsis0pnw8hyv6xc4frbkhy5ks03mr0z16gasffkycg"; depends=[]; }; gsmoothr = derive2 { name="gsmoothr"; version="0.1.7"; sha256="00z9852vn5pj04dhl3w36yk0xjawniay6iifw1i7fd8g98mgspxp"; depends=[]; }; gsrsb = derive2 { name="gsrsb"; version="1.1.1"; sha256="0yjxzc69ihsx5ni6jb4shsvl9vskqlls3gmpckmzx5nsh1l5s5vb"; depends=[ldbounds mvtnorm xtable]; }; - gss = derive2 { name="gss"; version="2.1-12"; sha256="02qpxx8lwkxsxv3xhkkxgpsj7i5nqaqs04afd2aby7b746v2pjdw"; depends=[]; }; + gss = derive2 { name="gss"; version="2.2-2"; sha256="1r0zq8ingrjkd775nkmr8jixzmx0sasfha4nzw677vkq8f4xm90x"; depends=[]; }; gstar = derive2 { name="gstar"; version="0.1.0"; sha256="1582f7jcphb32j3wdc345qa5sgm2xyimlc6r5r5jay7ca5ll8c98"; depends=[dplyr ggplot2 reshape2 xts zoo]; }; - gstat = derive2 { name="gstat"; version="2.0-5"; sha256="1c6dhjzn9rmb67j51izx9lvjdxnvvc4h5sxgixqd19vg9bh5694d"; depends=[FNN lattice sp spacetime zoo]; }; + gstat = derive2 { name="gstat"; version="2.0-6"; sha256="1azw1fwphwbakaqhdn4qmigcmblcdnbkm83rg29g4k24la5fc4b7"; depends=[FNN lattice sp spacetime zoo]; }; gsubfn = derive2 { name="gsubfn"; version="0.7"; sha256="00j6b8b6xsx6v370h220x233rpk6asca78165y3d48jpwvwisdc9"; depends=[proto]; }; gsw = derive2 { name="gsw"; version="1.0-5"; sha256="0lv4x4is53xybgg205dncizpnqnakqk47b5wgys2kr4ixqc8jipb"; depends=[testthat]; }; gsynth = derive2 { name="gsynth"; version="1.0.9"; sha256="1m9s3gymm0z6frfzmz7kv8cbdnla2vp4aam5b2zzcxwflzwbplm3"; depends=[abind doParallel foreach GGally ggplot2 MASS mvtnorm Rcpp RcppArmadillo]; }; - gt = derive2 { name="gt"; version="0.2.0.5"; sha256="1kc8x3bzlpqnxr1in8s3a6d52hvhs93vgbdamxzz67q7rgdzfhhk"; depends=[checkmate commonmark dplyr fs ggplot2 glue htmltools magrittr rlang sass scales stringr tibble tidyselect]; }; + gt = derive2 { name="gt"; version="0.2.2"; sha256="0krxs7fvwkaadkpw8g3h8slijmssibqcg5smh7xwzgrzpaiglwwx"; depends=[checkmate commonmark dplyr fs ggplot2 glue htmltools magrittr rlang sass scales stringr tibble tidyselect]; }; gt4ireval = derive2 { name="gt4ireval"; version="2.0"; sha256="1d567iz57xqszm45l1wq4n2qrrmyz8ssll1vllfmncb9ibbnx4f3"; depends=[]; }; gtWAS = derive2 { name="gtWAS"; version="1.1.0"; sha256="1kbkz0iwc3gfj982m93m2wdr1xm5rhy70k6bdc7kms9ivh5fh6sh"; depends=[]; }; gtable = derive2 { name="gtable"; version="0.3.0"; sha256="1lyncxf2dqdjgw1071cn9c8zwzkz6sldnd5cgmicf70bc726qf7x"; depends=[]; }; gtcorr = derive2 { name="gtcorr"; version="0.2-1"; sha256="1n56zmyv58jwr95p453jb86j82pdnq57gfc8m15jndjc9p31zl0m"; depends=[]; }; gte = derive2 { name="gte"; version="1.2-2"; sha256="1x528iakyjhh4j92cgm6fr49a3rdi4cqy28qhsfr2dwvxzxchl6h"; depends=[survival]; }; - gtfs2gps = derive2 { name="gtfs2gps"; version="1.1-0"; sha256="13y8nry300g0c98asmxpqbaz7vxwlqqfd9d12290i0fmnzl3kn2z"; depends=[data_table furrr future lwgeom magrittr pbapply raster Rcpp rgdal sf sfheaders sp units]; }; + gtfs2gps = derive2 { name="gtfs2gps"; version="1.2-1"; sha256="1b3l81898yqgr6x0lcc7anw35yvmy5c08qfv9n0445yfyazjwczm"; depends=[data_table furrr future lwgeom magrittr pbapply raster Rcpp rgdal rgeos sf sfheaders sp units]; }; gtfsrouter = derive2 { name="gtfsrouter"; version="0.0.1"; sha256="0znr0hw6f8wxy3vj944lrlsb0a70w2p20gw50jr2ij9xikawh2ih"; depends=[data_table Rcpp]; }; gtheory = derive2 { name="gtheory"; version="0.1.2"; sha256="1xc1jl69z5csalqk3hx83s53awcl1fjq6p0x2pczhs7dsvwd6lks"; depends=[lme4]; }; gtools = derive2 { name="gtools"; version="3.8.2"; sha256="1pnwy412wvhhvnnx8qg6s9hrgcnsfhnfcpf2560ipipk845acfsh"; depends=[]; }; gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; }; - gtrendsR = derive2 { name="gtrendsR"; version="1.4.4"; sha256="0b05m5jbgbhdjmwp89zaa276z1h2qib2h30msg69lhwbdcsva96q"; depends=[anytime curl ggplot2 jsonlite]; }; - gtsummary = derive2 { name="gtsummary"; version="1.3.0"; sha256="0gwxpzvzdz0c7akidfgjbm44j4qx5yhh9009fl7qf2547380fsd7"; depends=[broom broom_mixed crayon dplyr forcats glue gt knitr lifecycle magrittr purrr rlang stringr survival tibble tidyr tidyselect usethis]; }; + gtrendsR = derive2 { name="gtrendsR"; version="1.4.6"; sha256="0v46j1k7yzqhl6x6axq96rv4icwfvvscdzkd6wpl3si8qy3m4dp9"; depends=[anytime curl ggplot2 jsonlite]; }; + gtsummary = derive2 { name="gtsummary"; version="1.3.3"; sha256="1c3fzvb0y9jfzkaq86fjlm2kfdxin8ny1xc2hi88cy720bimaldq"; depends=[broom broom_mixed dplyr forcats glue gt knitr lifecycle magrittr purrr rlang stringr tibble tidyr tidyselect usethis]; }; + guaguas = derive2 { name="guaguas"; version="0.1.0"; sha256="10f5kbd03szx2pmmcm2zjjv8zkm0hdf0lk3s91yk40x80s2bxccs"; depends=[tibble]; }; guardianapi = derive2 { name="guardianapi"; version="0.1.1"; sha256="17xmmr6pfzhdnmf45jzvk84gbfnmlw1qfv1gqjaw85vgm8b6jn6l"; depends=[dplyr httr jsonlite rlang tibble]; }; guess = derive2 { name="guess"; version="0.1"; sha256="198pxi0yipgm9wccpj3y4a0gkibhyxcmb7v5dz7ipzrk44ha5g6j"; depends=[Rsolnp]; }; guf = derive2 { name="guf"; version="1.0.2"; sha256="1dfmja2da211pcid4hr7x9q0sgz37756rpykm1ax862avdl8hsmc"; depends=[]; }; + guiplot = derive2 { name="guiplot"; version="0.1.0"; sha256="0h14ki1lwr9gln9yqhg2y81sgnz60sjy31cygxplapf215xbmjs2"; depends=[DT ggplot2 magrittr R6 rlang shiny svglite]; }; gumbel = derive2 { name="gumbel"; version="1.10-2"; sha256="0s9idcrssnl683abwky9zvqylciy0b51z935yfvb2bm8b0b0b4ij"; depends=[]; }; gunit = derive2 { name="gunit"; version="1.0.0"; sha256="0vmm47f21n9f334aj38gzrmv1c4sp76njk95ld9gv6fcfxgsipyh"; depends=[magrittr stringr tibble units]; }; gunsales = derive2 { name="gunsales"; version="0.1.2"; sha256="02vz16lhym72vvf48yai1g371wygdlmi63a6ylc147l0b69jgw31"; depends=[data_table dplyr ggplot2 seasonal x13binary zoo]; }; @@ -8736,7 +9043,7 @@ in with self; { gwfa = derive2 { name="gwfa"; version="0.0.4"; sha256="0jz82d9lfyd07z0jjlfqzsg7a3vnyz0s1j0rrb5sg9pnvcfjk9qy"; depends=[Rcpp sp]; }; gwrpvr = derive2 { name="gwrpvr"; version="1.0"; sha256="0x15nv2pfv99c04lgs6q6hgczarld34xc4aqw9bn179m7j02v6m3"; depends=[]; }; gwrr = derive2 { name="gwrr"; version="0.2-1"; sha256="1fjk217pimnmxsimqp9sn02nr1mwy3hw3vsr95skbfsd6vdda14d"; depends=[fields lars]; }; - gwsem = derive2 { name="gwsem"; version="0.1.17"; sha256="1f2hym3md1agq2ml7f2v1dkb308iy1rl68c12f7n3ycsw0ql70ix"; depends=[BH data_table lifecycle OpenMx qqman Rcpp]; }; + gwsem = derive2 { name="gwsem"; version="2.0.5"; sha256="104inkhim42wrnrbx9kbg0cbdlwj07k9j5m8xd9nhkrbyn4lnyzn"; depends=[BH data_table lifecycle OpenMx qqman Rcpp]; }; gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; }; h2o = derive2 { name="h2o"; version="3.30.0.1"; sha256="1xdhd0h0hncg7s5nsrb97arqiyd9r3cxv1in36lx7pyplxcfy4fb"; depends=[jsonlite RCurl]; }; h2o4gpu = derive2 { name="h2o4gpu"; version="0.2.0"; sha256="06d2rrr27xvnsai6zjiaiw0jjfzdza1cc39c03d6pjkvnh0mqh2c"; depends=[magrittr reticulate]; }; @@ -8744,14 +9051,16 @@ in with self; { hIRT = derive2 { name="hIRT"; version="0.3.0"; sha256="0s0i6p9iv0yv0l15dnwkpcmc91751jyjs1y1nz671lz6jpb8rz5c"; depends=[ltm Matrix pryr rms]; }; hJAM = derive2 { name="hJAM"; version="1.0.0"; sha256="1pnjcn54zi4d7h9zc9wr1gv51dzb0vasfcrw4c1kqymhxsq2yfh3"; depends=[dplyr ggplot2 ggpubr reshape2]; }; hNMF = derive2 { name="hNMF"; version="0.9"; sha256="0qavavgiqah4dv0gz8v5ssz637sd341n9s0pyc232n2jhqpzl0cz"; depends=[MASS NMF nnls oro_nifti R_matlab rasterImage spatialfil]; }; - hR = derive2 { name="hR"; version="0.2.1"; sha256="1y0rzcrxb21fhxnpvhijxg0syhj8n20882cy79g5x4rv4xrngw1z"; depends=[data_table data_tree knitr rhandsontable shiny]; }; + hR = derive2 { name="hR"; version="0.2.2"; sha256="01yrhxy6jw97fsvw4g0r2nz5112gpi62zcazxzi2576hvbwafpdv"; depends=[data_table data_tree knitr rhandsontable shiny]; }; hSDM = derive2 { name="hSDM"; version="1.4.1"; sha256="1jwqjzr0zpckzh2jpqh17v6ypq4mzn5khlv6p37y59zz8bh9mvxp"; depends=[coda]; }; haarfisz = derive2 { name="haarfisz"; version="4.5"; sha256="1qmh4glwzqwqx3pvxc71rlcimp1l0plgdf380v9hk0b4gj7g3pkf"; depends=[wavethresh]; }; hablar = derive2 { name="hablar"; version="0.3.0"; sha256="12gm5n3p2kmjwhkf60n4bjn3lrj7lrs5sgmvads9sfp2ckhaiysk"; depends=[dplyr lubridate purrr]; }; hackeRnews = derive2 { name="hackeRnews"; version="0.1.0"; sha256="0vrdbk4dxbykb3hs35nxkl3s2ds92gs5qz66p85w8j5zjmwbw2x6"; depends=[future_apply httr jsonlite tibble]; }; + hacksaw = derive2 { name="hacksaw"; version="0.0.1"; sha256="0w00kws8gwwmqbrrhhavh3n011dhicz7fz9qmnj74016srzzvddw"; depends=[dplyr magrittr purrr rlang tibble tidyselect zeallot]; }; + hadron = derive2 { name="hadron"; version="3.1.0"; sha256="0fcl7mgw61jcpyn1m4l1n4hm01addza9pnb7l7xbhq6kx524kzcs"; depends=[abind boot R6 Rcpp stringr]; }; hagis = derive2 { name="hagis"; version="3.0.1"; sha256="1bljpva3j7x87hdmy8s9sh37r5vd8wkjzjqbk57akl654x6b0gfv"; depends=[data_table ggplot2 pander]; }; hail = derive2 { name="hail"; version="0.1.1"; sha256="1nrc9msqyy5iq2i6p8875anbqswxl2z6vdd4hvihnl22qh5fnbvh"; depends=[]; }; - hal9001 = derive2 { name="hal9001"; version="0.2.5"; sha256="16pzcjk0d7kvj3f8dxxzz5sjcsa6m5axc8rb29vxpmg54kyqypys"; depends=[assertthat glmnet Matrix origami Rcpp RcppEigen]; }; + hal9001 = derive2 { name="hal9001"; version="0.2.6"; sha256="1yzxskv4bvawss4vlcb2gh2v43jcnx799xnqrx37zhjd34wpm2w4"; depends=[assertthat glmnet Matrix origami Rcpp RcppEigen]; }; haldensify = derive2 { name="haldensify"; version="0.0.5"; sha256="02bmch7impx5cyv7nifhqln2ppk1qyyzr8w6my77p18wx52h1d4l"; depends=[assertthat data_table future_apply ggplot2 hal9001 origami Rdpack]; }; halfcircle = derive2 { name="halfcircle"; version="0.1.0"; sha256="1gbqbv3cn8w09i3f2ji3qq0snb4fy9243y12agw686fx46dfmhxs"; depends=[scales]; }; hamlet = derive2 { name="hamlet"; version="0.9.6"; sha256="076fh28grlrv38qywshi79m84jsz1ck9k4n0rg4svvr3gqkdbcn2"; depends=[]; }; @@ -8760,24 +9069,24 @@ in with self; { hans = derive2 { name="hans"; version="0.1"; sha256="0hh2nlzxs2kj93yb7yfm873m6nymjw5qmkin3qqn3acza6dr0k6q"; depends=[Rcpp]; }; hansard = derive2 { name="hansard"; version="0.8.0"; sha256="00mcy58nhlphb0v0wchbaw1qamm0435s09nxxw6rr5z872rhyf5a"; depends=[dplyr jsonlite lubridate snakecase tibble tidyr]; }; hapassoc = derive2 { name="hapassoc"; version="1.2-8"; sha256="0qs5jl0snzfchgpp6pabncwywxcmi743g91jvjiyyzw0lw85yv4s"; depends=[]; }; - haplo_stats = derive2 { name="haplo.stats"; version="1.7.9"; sha256="19kxascqq5qz0zdxx0w837ji207y1z2ggxkl4vmlbay03k2dw2mx"; depends=[rms]; }; - haploR = derive2 { name="haploR"; version="3.0.1"; sha256="162wqjpmgapy54n8msrw5apgzj586ps0kkc5wmbqay3l94xgnvzk"; depends=[DT httr plyr RCurl RUnit tibble XML]; }; + haplo_stats = derive2 { name="haplo.stats"; version="1.8.2"; sha256="13gc980jk1pas7mz9b4nmwqd64qhh2c0xhq1z06z67jgv7k8n7dc"; depends=[arsenal rms]; }; + haploR = derive2 { name="haploR"; version="4.0.1"; sha256="0qaykwlid1q03ba2qlvg51y1lghwqqwrv8glsqg5wfyqk34n2gs0"; depends=[DT httr plyr RCurl RJSONIO RUnit tibble XML]; }; haploReconstruct = derive2 { name="haploReconstruct"; version="0.1.2"; sha256="17zdl9c3yy6jdzv1wp0ailbga456pmmybzxh3dldymhj8qf32cx0"; depends=[data_table dbscan foreach gplots igraph matrixStats stringi zoo]; }; haplotyper = derive2 { name="haplotyper"; version="0.1"; sha256="0pcshlh29c4zazhkcq4371kqh9inrbx494y5a1qb1k2c92fkax31"; depends=[]; }; haplotypes = derive2 { name="haplotypes"; version="1.1.2"; sha256="07grdwli0kxnnnf7mg8z7gjpny88h71vf867g50f08yybgb46y70"; depends=[ape network phangorn plotrix sna]; }; happybiRthday = derive2 { name="happybiRthday"; version="0.0.1"; sha256="0rrvi5kx09p74xwxvqcwibbh4qjlk4jxb89grx74chjxk9ak2yv8"; depends=[data_table dplyr gh lubridate tidyr]; }; happytime = derive2 { name="happytime"; version="0.1.0"; sha256="03iblwb6w2dh9sibfi4nlswidck13hzsn7123838zp4sxfnrp041"; depends=[]; }; hapsim = derive2 { name="hapsim"; version="0.31"; sha256="0jw6iw89d4y8wjy58biv40szp123ql7frz1mmdjdxljmwaby963h"; depends=[MASS]; }; - hardhat = derive2 { name="hardhat"; version="0.1.2"; sha256="1fhs6inbjh7kdv6jamibpb2fccysg1k0w99hbdwhrc5yyljpqfil"; depends=[glue rlang tibble vctrs]; }; + hardhat = derive2 { name="hardhat"; version="0.1.4"; sha256="0gaj4hr4dj27jaasp7v0hzaivipplvq746ajsyz4yd1in03hfjvs"; depends=[glue rlang tibble vctrs]; }; harmonicmeanp = derive2 { name="harmonicmeanp"; version="3.0"; sha256="17irfw8788yhh36698p9w8wab6wcin1yzfinlbs3gdg70d42zcnd"; depends=[FMStable]; }; harrietr = derive2 { name="harrietr"; version="0.2.3"; sha256="0n6vsqysj4ijh06z6nqmj8x1z4w9711dxhbfp8p8fwi0l75pj0cj"; depends=[ape dplyr ggtree lazyeval magrittr rlang tidyr]; }; harrypotter = derive2 { name="harrypotter"; version="2.1.1"; sha256="1j3sv0rpp4lcrf09j4a3an4lkwi2x1z18iv62fk6c2kpp9b14b8r"; depends=[ggplot2 gridExtra]; }; hash = derive2 { name="hash"; version="2.2.6.1"; sha256="0b3fl0rvgwb992knl81vm99lsldg5clvaqjh6mamm6zqmb6dz056"; depends=[]; }; hashFunction = derive2 { name="hashFunction"; version="1.0"; sha256="1v57xj8xwv6xhxvgp0zxgvs5vcjw8z5k2ciwbn0jxf4ilyd66cgj"; depends=[]; }; hashids = derive2 { name="hashids"; version="0.9.0"; sha256="0233qly4rb1g4znxm9h9h8gskzrjyav6nd26xkdl7990m5hcbcwh"; depends=[]; }; - hashr = derive2 { name="hashr"; version="0.1.0"; sha256="1ri2zz2l1rrc1qmpqamzw21d9y06c7yb3wr60izw81l8z4mmyc3a"; depends=[]; }; + hashr = derive2 { name="hashr"; version="0.1.3"; sha256="0xbwzhvg77ch4na9ylb8y8nghmpy38dxcvn4g6g6adarm3lbm4ck"; depends=[]; }; hasseDiagram = derive2 { name="hasseDiagram"; version="0.1.3"; sha256="1r9z6jc9lbdj2xc81gpnbswrl8rhs8zrlsnypfrny40g3j402iap"; depends=[graph Rgraphviz]; }; - haven = derive2 { name="haven"; version="2.2.0"; sha256="0g9d6mxqmrw2zdms78jpx2sx73pczlyy771v1h5hmxqz9sqyk7hr"; depends=[forcats hms Rcpp readr rlang tibble tidyselect]; }; + haven = derive2 { name="haven"; version="2.3.1"; sha256="03cypgqhdkrfbfpl1yx2wb7flczrbak1w654wkicmd5ajwr9zvkf"; depends=[forcats hms Rcpp readr rlang tibble tidyselect vctrs]; }; hawkes = derive2 { name="hawkes"; version="0.0-4"; sha256="1ghwq3icxwmrai3xn9r8cnvlh3z3j18lznhw1bm31h9mkkp2dk0a"; depends=[Rcpp RcppArmadillo]; }; hazer = derive2 { name="hazer"; version="1.1.1"; sha256="1d1qj6mamgxlvxq2hjik69zfzackjz5819iss98jf5gdbdngw41x"; depends=[]; }; hazus = derive2 { name="hazus"; version="0.1"; sha256="1c0ahjdy9di1683nk5k4rmr6rhb66523ny039nyv842rgqdy625j"; depends=[reshape2]; }; @@ -8797,31 +9106,31 @@ in with self; { hdbm = derive2 { name="hdbm"; version="0.9.0"; sha256="0lvaica195chl6bb10wvvr7fbmh8b954fpxcm9r0gyp0d0i2a2w4"; depends=[Rcpp RcppArmadillo]; }; hdd = derive2 { name="hdd"; version="0.1.0"; sha256="0hnqjfp78s8fiabibf0dl57sj170ri1ysf7pyrk45z4qsnizbyn2"; depends=[data_table fst readr]; }; hddplot = derive2 { name="hddplot"; version="0.59"; sha256="18llkpawm12cjxlcrlra60m16virfpjqiaqkvy9mb3wq1zif61rh"; depends=[MASS multtest]; }; - hddtools = derive2 { name="hddtools"; version="0.8.2"; sha256="02gbqlzwxc77gllgz9sf2s73y4ngyb4warabdfyj2sm2g7jl6y12"; depends=[gdata Hmisc raster RCurl rgdal rnrfa sp stringr tibble XML zoo]; }; - hdf5r = derive2 { name="hdf5r"; version="1.3.2"; sha256="0c2p06k9bp9rf0fyavnxw5d8jr2bbgx3gjblahz581cpvsfksj9i"; depends=[bit64 R6]; }; + hddtools = derive2 { name="hddtools"; version="0.9.1"; sha256="0i5jqj0gb2yjf22rslicfdpwf9r1b917b9pi21d55qbpnj63r8jm"; depends=[curl raster readxl rgdal rnrfa sp tidyr XML zoo]; }; + hdf5r = derive2 { name="hdf5r"; version="1.3.3"; sha256="0i8m4yjxggrs05slq2afvz2ckl1yc9wq7gd1s7dq2gjn46zkry50"; depends=[bit64 R6]; }; hdfqlr = derive2 { name="hdfqlr"; version="0.6-1"; sha256="1z8sylaaki8ab9k7m4hp3530rnkxjh39zvw4n962fw5fb9a11dx3"; depends=[]; }; hdi = derive2 { name="hdi"; version="0.1-7"; sha256="1q58bvlqh59hv3vb3dw92r0w1nwyifnqm5ccss54fzmf2gjsj1cj"; depends=[glmnet linprog MASS scalreg]; }; hdlm = derive2 { name="hdlm"; version="1.3.1"; sha256="1zl6bksw0apkmn5shf8qjpxjyx6vb40dc4m4db76hhn5nhcp10ic"; depends=[foreach glmnet iterators MASS Matrix]; }; hdm = derive2 { name="hdm"; version="0.3.1"; sha256="1kibfc1fc94y1vk06nn0yfvpdzcm30a1jn89lqqfma70x5jpa25s"; depends=[checkmate Formula ggplot2 glmnet MASS]; }; - hdme = derive2 { name="hdme"; version="0.3.2"; sha256="01qpb194nxpfxhlwyd2p8cga9zypp000sjhpbzands660g224j84"; depends=[ggplot2 glmnet Rcpp RcppArmadillo Rdpack Rglpk]; }; + hdme = derive2 { name="hdme"; version="0.3.3"; sha256="1i6ixzl8kkj7jlj5q40xhbblw5a64fq0gfy6z6174fn2h8f4dqkj"; depends=[ggplot2 glmnet Rcpp RcppArmadillo Rdpack Rglpk]; }; hdnom = derive2 { name="hdnom"; version="6.0.0"; sha256="0wszxxfz5xkyqd3xgc9g3d5iwwsfkq9517bgp416h6l31ynxxrwn"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized survAUC survival]; }; hdpca = derive2 { name="hdpca"; version="1.1.3"; sha256="09h96wm6r6w1imkm4k9bg5l0vcq2yvbp6iqx786x99ds8jzppsb9"; depends=[boot lpSolve]; }; hdrcde = derive2 { name="hdrcde"; version="3.3"; sha256="0c2qbw4c3mq1cb068kjs72rxlbibz8svwcrx853jyr8ybs23z7ab"; depends=[ash ggplot2 KernSmooth ks locfit RColorBrewer]; }; hds = derive2 { name="hds"; version="0.8.1"; sha256="1smg5ixrl7f2x3wn7s5i26dyadn5sigpf4jsk236z1bhnz617ax4"; depends=[survival tensor]; }; - healthcareai = derive2 { name="healthcareai"; version="2.4.0"; sha256="04bv187agpmzb1igfdjb4naqlpffp4za7skb75xxr2hb1rcgcdvw"; depends=[caret cowplot data_table dplyr e1071 generics ggplot2 glmnet lubridate MLmetrics purrr ranger recipes rlang ROCR stringr tibble tidyr xgboost]; }; + healthcareai = derive2 { name="healthcareai"; version="2.5.0"; sha256="05qsmgrnaagnavlrs9c6j01j9c3lcc9j7cmbrx3y6lb6pf4zs195"; depends=[caret cowplot data_table dplyr e1071 generics ggplot2 glmnet lubridate MLmetrics purrr ranger recipes rlang ROCR stringr tibble tidyr xgboost]; }; healthforum = derive2 { name="healthforum"; version="0.1.0"; sha256="13ih00amv9hrpngm6pxc8vzqzhx8c0yqgaprxdcp5li90lg5r3av"; depends=[magrittr purrr rvest stringr tokenizers xml2]; }; heatex = derive2 { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; }; heatmap_plus = derive2 { name="heatmap.plus"; version="1.3"; sha256="0rzffm15a51b7l55k0krk6w7v8czy3vpwz1qmbybr7av0pln7wn3"; depends=[]; }; heatmap3 = derive2 { name="heatmap3"; version="1.1.7"; sha256="1gdjc5b4f4nf5zpfdl0ch352p3bwbcw5hkd5vlarxvb2qkf9pcxs"; depends=[fastcluster]; }; heatmapFit = derive2 { name="heatmapFit"; version="2.0.4"; sha256="1rswp1wp58f21fpyjybcvvmnn53kr54ij83hp05qbvl7yn1fsnrb"; depends=[]; }; heatmaply = derive2 { name="heatmaply"; version="1.1.0"; sha256="133q8ir45vhfxs2lnd96k97g21ihg2arfhp349kmk339pk32fcxz"; depends=[assertthat colorspace dendextend egg ggplot2 htmlwidgets magrittr plotly RColorBrewer reshape2 scales seriation viridis webshot]; }; - heatwaveR = derive2 { name="heatwaveR"; version="0.4.2"; sha256="1fp38vlb4646jg397gsxmf5ws15grmmg6hdzijwll5zsg6a9xhg4"; depends=[data_table dplyr ggplot2 lubridate plotly Rcpp RcppArmadillo RcppRoll tibble zoo]; }; + heatwaveR = derive2 { name="heatwaveR"; version="0.4.4"; sha256="0d2j2qmfm5q0g57hrfkmd5mf5n4cinldh5l234nfk1ykf8s2aak3"; depends=[data_table dplyr ggplot2 lubridate plotly plyr Rcpp RcppArmadillo RcppRoll tibble zoo]; }; heavy = derive2 { name="heavy"; version="0.38.196"; sha256="05k788ynw9fhhmjydzp8dbk1vhl44j2rz2shqwn02i40jmwdvwrk"; depends=[]; }; heddlr = derive2 { name="heddlr"; version="0.6.0"; sha256="0ixmcgvfbq4hi3wv1fyzpwacmxmixsw5yq6mq5xygk6ji03m1v23"; depends=[rlang utf8 yaml]; }; hedgehog = derive2 { name="hedgehog"; version="0.1"; sha256="1mvjnm2zlc4pvw9vnhxr0dj1g1sfqvlrnnhcipzfbvr147yan9l5"; depends=[rlang testthat]; }; - heemod = derive2 { name="heemod"; version="0.12.0"; sha256="14fa2bcmzxymnis6kj46phbcbxz2a9i9p8cqpq6s6c6hzj5g9fw6"; depends=[dplyr ggplot2 lazyeval memoise mvnfast plyr pryr purrr rlang tibble]; }; + heemod = derive2 { name="heemod"; version="0.13.0"; sha256="0jig4ba1szgn8x6fivjlr9ns2lryip2nr68q64bsdvvhjsmv1k4s"; depends=[dplyr ggplot2 lazyeval memoise mvnfast plyr pryr purrr rlang tibble]; }; heims = derive2 { name="heims"; version="0.4.0"; sha256="0vnq31jwn09grni4gdhf1hzd87b62as4f65b2qw7ky6mi38ahr5d"; depends=[bit64 data_table fastmatch hutils lubridate magrittr]; }; - helda = derive2 { name="helda"; version="1.0.1"; sha256="1qfnqa94csq7c67prpmyvnkkzbylv4cq4zsmici9c19s9yw4kf76"; depends=[dplyr ggplot2 rlang sqldf stringr]; }; + helda = derive2 { name="helda"; version="1.1.3"; sha256="0ffy1cy6p98r23gz0avqbwpr7q3b76mmgic6y8dipfkbs7zqcdv6"; depends=[dplyr ggplot2 rlang sqldf stringr]; }; helixvis = derive2 { name="helixvis"; version="1.0.1"; sha256="113rnpnrcnw18ks78fgq79zdrw3kmpzpimlc45gvj0za2fbyci3p"; depends=[ggforce ggplot2 rlang]; }; hellno = derive2 { name="hellno"; version="0.0.1"; sha256="1j787rw9hh75bvkckmlz5xkgwc22gd7si3mgjd7v60dd6lykfa88"; depends=[]; }; helloJavaWorld = derive2 { name="helloJavaWorld"; version="0.0-9"; sha256="1a8yxja54iqdy2k8bicrcx1y3rkgslas03is4v78yhbz42c9fi8s"; depends=[rJava]; }; @@ -8829,18 +9138,20 @@ in with self; { helsinki = derive2 { name="helsinki"; version="0.9.29"; sha256="0bn5iyxjn9qs6f0dmhv51ssayywbx1rayh80zbzk0gsm94nhs0d9"; depends=[maptools RCurl rjson sp]; }; heplots = derive2 { name="heplots"; version="1.3-5"; sha256="1vyhfkp66gi17jni3gsbv9kn1s0n00qigr13q8xbzbgylz5jjiln"; depends=[car MASS]; }; here = derive2 { name="here"; version="0.1"; sha256="1vb5dxqdpimy51q1gjsypyq14p2hhvj7wsvh6g35pj1g03cyg9av"; depends=[rprojroot]; }; - hereR = derive2 { name="hereR"; version="0.3.3"; sha256="0z8w50cjz2zivdlbxipn8av055ssgrv9077v4413xkjgv4c000f1"; depends=[curl data_table jsonlite lwgeom sf stringr]; }; + hereR = derive2 { name="hereR"; version="0.4.0"; sha256="0plyxjs2lbniw8dc0agfga9lzx5czd0g9mxhllkajshmk3502fja"; depends=[curl data_table flexpolyline jsonlite sf stringr]; }; + heritEWAS = derive2 { name="heritEWAS"; version="0.2.0"; sha256="0yss9vf2m9szq8xi5i2nhf85mfvzvhv6c1f4kvvb2z9lmaicjni5"; depends=[]; }; heritability = derive2 { name="heritability"; version="1.3"; sha256="0a0pw8hppkgypl4jaa38hks9nxfwz2zbsd4w6w40j1hxlyy4km8m"; depends=[MASS]; }; hermite = derive2 { name="hermite"; version="1.1.2"; sha256="0j9s7ayvbvmgwybrvf703b72qbn8gskb105pis19ig2sslllzda3"; depends=[maxLik]; }; hero = derive2 { name="hero"; version="0.4.7"; sha256="129v2pjbxm5aalr5lfx0kh20rhwksnb80pc459pxg0xkwxvy1l3d"; depends=[fields Matrix optimx pbapply rgeos sp]; }; - hesim = derive2 { name="hesim"; version="0.2.3"; sha256="1x4bhg2rmp8vf0fhpnj7pkfaywcss203c9n23b43hafzy5pkcd6w"; depends=[data_table flexsurv MASS R6 Rcpp RcppArmadillo survival]; }; + hesim = derive2 { name="hesim"; version="0.3.1"; sha256="1jp703b4xn8s0maja1vmb5ca4fw96g83f3nfm6i2qd250d3sx705"; depends=[data_table flexsurv MASS R6 Rcpp RcppArmadillo survival]; }; het_test = derive2 { name="het.test"; version="0.1"; sha256="08kxp81dx32anh0k5b65x7w7madwnn9hiabdrk6ck6b6mx37x26v"; depends=[vars]; }; hetGP = derive2 { name="hetGP"; version="1.1.2"; sha256="0r7hzw6ccyrqpq51adljd2ljv9dl00c0dr8frjrhibpzpc68z3sz"; depends=[DiceDesign MASS Rcpp]; }; hett = derive2 { name="hett"; version="0.3-2"; sha256="1kmspw0738pdall5scmllsa79dynliai2glk1h5rzm4030r5rd6j"; depends=[lattice MASS]; }; + hettreatreg = derive2 { name="hettreatreg"; version="0.1.0"; sha256="092xd2yndg5n5shxmcyn2gh6a6w1i1497cvj009ih3ax8hk3crf0"; depends=[]; }; hettx = derive2 { name="hettx"; version="0.1.1"; sha256="0zfxg88l83pzj37c5khpv4vi0v28fdnp0p8yz39scm8d8lya1dkm"; depends=[doParallel dplyr foreach formula_tools MASS moments mvtnorm plyr purrr quantreg tidyverse]; }; heuristica = derive2 { name="heuristica"; version="1.0.2"; sha256="1wqdwggnma6p667ivr0xja4vvn3jgzbkc5whkkijmdmxpjzg1wz6"; depends=[Hmisc]; }; heuristicsmineR = derive2 { name="heuristicsmineR"; version="0.2.4"; sha256="0dp85yvn0fr22l174ff34pv9xfxh3d7na9dxim2z7f4ialdnialw"; depends=[BH bupaR data_table DiagrammeR dplyr ggplot2 ggthemes magrittr petrinetR processmapR purrr Rcpp rlang scales stringr tidyr]; }; - hexSticker = derive2 { name="hexSticker"; version="0.4.6"; sha256="02zdnxnhci0d9dclb6z3zc8sm1c4bj8zzbapwy34h8bs3sz1c8xn"; depends=[ggimage ggplot2 hexbin showtext sysfonts]; }; + hexSticker = derive2 { name="hexSticker"; version="0.4.7"; sha256="17qrprl0y6p4yp38rv9ndy7s8205jy3zjfwsjzxlk42pk504ifp1"; depends=[ggimage ggplot2 hexbin showtext sysfonts]; }; hexView = derive2 { name="hexView"; version="0.3-4"; sha256="01hiqyibsd4as7jcklzg09pl12la341mg561vn16z4jzdarfvkfc"; depends=[]; }; hexbin = derive2 { name="hexbin"; version="1.28.1"; sha256="1ry6jm3lqz3mj0s5rzbs6mpkz2hxpnvbw8c1vwc4pj7b173r5l22"; depends=[lattice]; }; hextri = derive2 { name="hextri"; version="0.6"; sha256="05rvigi225npncbr1brc6apc7gsg9a5jzcbmhvflwp3hbcg3hn02"; depends=[FNN hexbin]; }; @@ -8861,29 +9172,31 @@ in with self; { hierarchicalDS = derive2 { name="hierarchicalDS"; version="3.0"; sha256="16d6l3y21nhynfjk4swp3pnjr6vhcxq369djgxz907zsjby35gkz"; depends=[coda ggplot2 Matrix mc2d MCMCpack mvtnorm rgeos truncnorm xtable]; }; hierarchicalSets = derive2 { name="hierarchicalSets"; version="1.0.2"; sha256="0m5mnx1zmiscj0k1gnljr7fla4y1qhysi32a8q9jlah2q7grk7x9"; depends=[ggdendro ggplot2 gtable MASS Matrix RColorBrewer Rcpp scales]; }; hierband = derive2 { name="hierband"; version="1.0"; sha256="0d95hrgkd8b5sww3wsgs6v9zg9pm71ick8x8kj8d6vyib350h6yn"; depends=[]; }; - hierfstat = derive2 { name="hierfstat"; version="0.04-22"; sha256="1fav2v2996v5kb1ffa6v5wxfm921syxg6as034vd3j4jfhdibyfx"; depends=[ade4 adegenet gtools]; }; + hierfstat = derive2 { name="hierfstat"; version="0.5-7"; sha256="0dp8k1z5a8gqnax99y1hwfvxilzf4n2i751zr0z6ihrzirsvb3m3"; depends=[ade4 adegenet gaston gtools]; }; hiertest = derive2 { name="hiertest"; version="1.1"; sha256="17maf1w4vkqknxff3f00fzv136j3dbbigyzl4vq4sln9j27w10r3"; depends=[]; }; highD2pop = derive2 { name="highD2pop"; version="1.0"; sha256="1s4v6m2d3vzvxsgmjzczv1zj3kv3ygvv6gbkkbjwsdhkvc1rdmf0"; depends=[fastclime]; }; + highDmean = derive2 { name="highDmean"; version="0.1.0"; sha256="0z81iw1nb8y4pvmhk8ay9pq4kvqxwxwv8q6p47hy8s2b465sfy1f"; depends=[]; }; highSCREEN = derive2 { name="highSCREEN"; version="0.3"; sha256="179l82n7l7dfn40k6zgigw56ggwqyi34gllc2wvcw3yvfnd3l7s4"; depends=[gplots]; }; highTtest = derive2 { name="highTtest"; version="1.1"; sha256="18hgxlr0y8y1d4ldqmfcg4536lhyn5p6w88sq1vj74qr5wzydga1"; depends=[]; }; - highcharter = derive2 { name="highcharter"; version="0.7.0"; sha256="0qfv25dqr7l54jq3vrnwphsj7wzk0an3vfx1zik36wi05yf2w8br"; depends=[assertthat broom crosstalk dplyr htmltools htmlwidgets igraph jsonlite lubridate magrittr purrr quantmod rlang rlist stringr tibble tidyr whisker xts yaml zoo]; }; + highcharter = derive2 { name="highcharter"; version="0.8.2"; sha256="1hwiifpm60kqgxlvp8zd6mhgbzc4mkcz9s9yc6byrm9i6daiqs8r"; depends=[assertthat broom dplyr htmltools htmlwidgets igraph jsonlite lubridate magrittr purrr quantmod rjson rlang rlist stringr tibble tidyr xts yaml zoo]; }; highfrequency = derive2 { name="highfrequency"; version="0.6.5"; sha256="1j7wn75xql6pw7inmvh9729l320wd3ss68jhz7y8cp4c60w2mkww"; depends=[cubature data_table lubridate mvtnorm Rcpp RcppArmadillo RcppRoll readr robustbase xts zoo]; }; highlight = derive2 { name="highlight"; version="0.5.0"; sha256="1shar4y07wyixg0ichdrn2xhgwkl3mv2pxkalqzisc69w605b3hf"; depends=[]; }; highlightHTML = derive2 { name="highlightHTML"; version="0.2.5"; sha256="0j3zrvil7k5wfsbgfj2b4nbx77qsj3b4makv5angcf8s59p7q80r"; depends=[]; }; highmean = derive2 { name="highmean"; version="3.0"; sha256="1lq7z0l1737j4wvsy7951405afylyywp7vf2i7girzh459fdfzpc"; depends=[MASS mnormt mvtnorm]; }; highr = derive2 { name="highr"; version="0.8"; sha256="0my6idnhmmgs4q1vs40y2lh56yij2p59mpwvm53wjs2zk6x1zl2b"; depends=[]; }; highriskzone = derive2 { name="highriskzone"; version="1.4.5"; sha256="09ad025ydpfsrkcfqsfm4cj6lk8shrdh6vyya7isqwrd5jfyf1qc"; depends=[deldir fields ks maps Matrix mvtnorm rgeos spatstat]; }; + higlasso = derive2 { name="higlasso"; version="0.9.0"; sha256="09d500jsxlrv658i90xnb2wj1ad89v1iwb6y7vascyvg3cff104h"; depends=[gcdnet gglasso purrr Rcpp RcppArmadillo]; }; higrad = derive2 { name="higrad"; version="0.1.0"; sha256="0q9av8qyvmvgy6a3l7svcmbkjjgnp4iny1cld4g3qsbaz3yp3jaj"; depends=[Matrix]; }; hilbertSimilarity = derive2 { name="hilbertSimilarity"; version="0.4.3"; sha256="1251df3q7c7c69f8q9y9bxj210bk2dh80c8ca4s58isf0hr2x7zp"; depends=[entropy Rcpp]; }; hildareadR = derive2 { name="hildareadR"; version="0.1.0"; sha256="0xvwpp9cb2bvy91081v0pvk778bbcginlnlq3dfv2cg7xnrhy0cn"; depends=[dplyr haven]; }; - hillR = derive2 { name="hillR"; version="0.4.0"; sha256="0wivagbn4clfm3vbxbl3p93d9yxms94gkvi7p15lh0jfdppzm4c9"; depends=[ade4 ape FD plyr tibble]; }; + hillR = derive2 { name="hillR"; version="0.5.0"; sha256="00ms1clypd52w921l9ny73kqwim80chjfmbxjsxxgyj9pfardl2d"; depends=[ade4 ape FD geiger plyr tibble]; }; hilldiv = derive2 { name="hilldiv"; version="1.5.1"; sha256="1jp4xvrpqd575y2x0i73s0bq708bzi6gdhqgz85bia6d5kf05lq9"; depends=[ape data_table FSA geiger ggplot2 ggpubr qgraph RColorBrewer scales vegan]; }; hillmakeR = derive2 { name="hillmakeR"; version="0.2"; sha256="1baynibgn4xqmpsxna8irggxvdc484mq5nza00rwg58vh1bc7wzq"; depends=[]; }; hindex = derive2 { name="hindex"; version="0.2.0"; sha256="01mcd2br33qqkfcyxl584f3l6kyb2cgzpd207p0mynzdaallgxgc"; depends=[foreach ggplot2 purrr]; }; hindexcalculator = derive2 { name="hindexcalculator"; version="1.0.0"; sha256="06b4dn629avmnyqxb0l39m00wz9cg9dddmm6qhgwgnzlxh14ifgk"; depends=[]; }; hint = derive2 { name="hint"; version="0.1-1"; sha256="1n18j2hcb1qynhsln10nzryi20l5aqhr7i1aanww10y5dz573zi3"; depends=[]; }; - hipread = derive2 { name="hipread"; version="0.2.1"; sha256="0zll3w0arwjaz16dr9dxns3s25p3fiq4ccnziq4nw7i552zaixd7"; depends=[BH R6 Rcpp rlang tibble]; }; - hisse = derive2 { name="hisse"; version="1.9.6"; sha256="1yli61d0qbmg0prkvlbq6l6rqj859bgg46rsixa3ffq2dsk4w7s7"; depends=[ape data_table deSolve diversitree GenSA nloptr phytools plotrix subplex]; }; + hipread = derive2 { name="hipread"; version="0.2.2"; sha256="1y51yif2spl6brqjvb20k9r6xwkr5f6brv08qcl4g9xg561yngff"; depends=[BH R6 Rcpp rlang tibble]; }; + hisse = derive2 { name="hisse"; version="1.9.8"; sha256="07b199jijfvssg9r22nknp0zhhr11k0lf2kaqi2xws27j1b2cw0h"; depends=[ape data_table deSolve diversitree GenSA nloptr phytools plotrix subplex]; }; histmdl = derive2 { name="histmdl"; version="0.7-1"; sha256="0k6l3pfjzlgpxv55vy8dg4sl8zhh0460xcfszwp2k9sbzanwaamp"; depends=[]; }; histogram = derive2 { name="histogram"; version="0.0-25"; sha256="0yymc7fw4qkbigr8jiw2nzjyrw0ikkipz62pdn3bpz1f7nb7mi93"; depends=[]; }; historydata = derive2 { name="historydata"; version="0.1"; sha256="1h69x3iig542d43p9zm8x83p4dq48iwsw606j4fndnqhx99vzkw6"; depends=[]; }; @@ -8894,21 +9207,22 @@ in with self; { hkclustering = derive2 { name="hkclustering"; version="1.0.1"; sha256="19syq06y5dl0mcwyaxr7w1hj8ffp5s140j72djcz0lljhskzmp6f"; depends=[cluster]; }; hkevp = derive2 { name="hkevp"; version="1.1.4"; sha256="01m5yywi4vjnwhdayaqaqcp5lz70mllj5ifnwdb4c60wm9aby9pm"; depends=[Rcpp RcppArmadillo]; }; hkex_api = derive2 { name="hkex.api"; version="0.1"; sha256="0hqwihlrppchpaz2yaq92gf779yi5k8n7sxy1kbpjxs2qc18xvj2"; depends=[httr RCurl XML]; }; + hmclearn = derive2 { name="hmclearn"; version="0.0.4"; sha256="04q0lhi619zlm1j4cq6jfj0zj6f6vdsk3659h4r2963hk2rs95qk"; depends=[bayesplot MASS mvtnorm]; }; hmeasure = derive2 { name="hmeasure"; version="1.0-2"; sha256="0l4nlny532kddiaa1nmgd37971whhwzb54mb1pvbwax7fsg6hmhw"; depends=[]; }; hmgm = derive2 { name="hmgm"; version="1.0.2"; sha256="1sln43c8f40kxa9gx0iykgv434km7gsldn748ilsdcxg566ayvzj"; depends=[binaryLogic glmnet MASS Matrix nat Rcpp rgl]; }; - hmi = derive2 { name="hmi"; version="0.9.17"; sha256="08cppa061xn13lyp7d9jsybn0cc6k2ffml79m5bp7fk11gzq18mb"; depends=[boot coda linLIR lme4 MASS Matrix MCMCglmm mice msm mvtnorm nlme nnet ordinal pbivnorm rlang tmvtnorm VGAM]; }; + hmi = derive2 { name="hmi"; version="0.9.19"; sha256="03bshnql53isqjdzv8qkvdyxy9i9av92g0vfbkx06x4bbc4a8msf"; depends=[boot broom_mixed coda linLIR lme4 MASS Matrix MCMCglmm mice msm mvtnorm nlme nnet ordinal pbivnorm rlang tmvtnorm]; }; hmlasso = derive2 { name="hmlasso"; version="0.0.1"; sha256="0ydcyz9pw30ji8ghrvkgcbmp27d661vajl97b8cwis52605a3gfx"; depends=[BH MASS Matrix Rcpp RSpectra]; }; - hmm_discnp = derive2 { name="hmm.discnp"; version="2.1-12"; sha256="1jxbwqh0cc0f07qza0kjbhh3zy7xlk5q7gb8078kprg37if1qd2p"; depends=[nnet]; }; - hmma = derive2 { name="hmma"; version="1.0.0"; sha256="1gpdq1pka9j0yvci791g74kgrvbz9x9gnw7irf0048msis0lqcv4"; depends=[bnlearn graph MCMCpack mhsmm Rgraphviz]; }; + hmm_discnp = derive2 { name="hmm.discnp"; version="3.0-6"; sha256="0jb4ga50d0qy9kz13qjsbwbvyhn8qiqsjsai2m6kvxb7qzd33g26"; depends=[nnet]; }; + hmma = derive2 { name="hmma"; version="1.1.0"; sha256="1qsvczqq44h46z0nfblv4rarbg64imz8m0jhxdhva27kbzdvqf97"; depends=[bnlearn graph MCMCpack mhsmm Rgraphviz]; }; hmmm = derive2 { name="hmmm"; version="1.0-4"; sha256="1sbr85lcmcw3lv0ygqwfbarr91dp3br1xnlygy49145cvl93nfci"; depends=[MASS mvtnorm nleqslv quadprog]; }; hms = derive2 { name="hms"; version="0.5.3"; sha256="1baki0qw5ijgiflvsdvqj3apg4yanf12vx14kwbqdzk5rz46fasf"; depends=[pkgconfig rlang vctrs]; }; - hmstimer = derive2 { name="hmstimer"; version="0.0.2"; sha256="0qv2pls6mplnv3mylbiwh83gnvq2qkdpnnjnxnhrgmwia9fapixs"; depends=[]; }; + hmstimer = derive2 { name="hmstimer"; version="0.1.0"; sha256="1b2k18gm9fka8hsm1hhhplk7gj6w9s3sjh686kxbrci3a4mcb0g5"; depends=[hms lifecycle]; }; hnp = derive2 { name="hnp"; version="1.2-6"; sha256="12cbc353ipr2rcc93skf1766g38j1pvpdkqk3cswv0cxsjl2x7pl"; depends=[MASS]; }; hoa = derive2 { name="hoa"; version="2.1.4.1"; sha256="152vz6cddphmxvm7vi6f3b7jjpib0nsb6qv2k1wrmfrpvv3hgsxx"; depends=[statmod survival]; }; hoardeR = derive2 { name="hoardeR"; version="0.9.4-2"; sha256="1jdxfalmi4p7gwb7jndxbzbklv1fk0c57shnl4jz27s81lndg437"; depends=[bamsignals Biostrings data_table GenomicRanges GenomicTools_fileHandler httr IRanges KernSmooth knitr MASS R_utils RCurl rmarkdown Rsamtools S4Vectors seqinr stringr XML]; }; hoardr = derive2 { name="hoardr"; version="0.5.2"; sha256="0m6wfs78jpxk2jnlqdbg5x7i993j70bvaxm643qhb8axwbq174c1"; depends=[digest R6 rappdirs]; }; holdem = derive2 { name="holdem"; version="1.2"; sha256="0mcb4civ4p7apm7kfl88apvb4yznsmn4hggfggmjhs046g6bi2p7"; depends=[]; }; - holodeck = derive2 { name="holodeck"; version="0.2.0"; sha256="1p7crpwa56a4363x4c888475xajga3blp544as4ad85br1k8vpjl"; depends=[assertthat dplyr MASS purrr rlang tibble]; }; + holodeck = derive2 { name="holodeck"; version="0.2.1"; sha256="1iazi5is41ap58vq56jgz88id0i6ppz55y9gx77a5navrrn0db4l"; depends=[assertthat dplyr MASS purrr rlang tibble]; }; homals = derive2 { name="homals"; version="1.0-8"; sha256="0gad0jmflw5zmzf9hk5qqmxxpbncm9gngsi24i3rgiz7565kli1r"; depends=[ape rgl scatterplot3d]; }; homeR = derive2 { name="homeR"; version="0.3.0"; sha256="0gi383392rs7snb2l9760vkws5hqfikyaj3i7cyby9g1sc2s6yx8"; depends=[]; }; hommel = derive2 { name="hommel"; version="1.5"; sha256="15c5az35zwmj6g0pxycfr4jnlc5ykllly0xk8gbdv7yk5m23my6d"; depends=[Rcpp]; }; @@ -8926,7 +9240,7 @@ in with self; { hotspots = derive2 { name="hotspots"; version="1.0.3"; sha256="12v88k3yz1bsxx9p5dx8y54ccqcglwknm2jr7ybygdj2yasjr5l0"; depends=[ineq lattice]; }; housingData = derive2 { name="housingData"; version="0.3.0"; sha256="0ngfx2vjx705xixzpz0rgx1481cr2szj4yfi5g7ma1hhivddl7d1"; depends=[]; }; howmany = derive2 { name="howmany"; version="0.3-1"; sha256="045ck8qahfg2swbgyf7dpl32ryq1m4sbalhr7m5qdgpm62vz8h7f"; depends=[]; }; - hpa = derive2 { name="hpa"; version="1.0.1"; sha256="18055gh3nasdh6fh1xw95zl2vidqkw5b99b1zhh78j84lzs6r3gm"; depends=[Rcpp RcppArmadillo]; }; + hpa = derive2 { name="hpa"; version="1.1.1"; sha256="00121j701cyinakicy991nknaydhdpw6fm7knxq1vrmm2mc358vv"; depends=[Rcpp RcppArmadillo RcppParallel]; }; hpackedbubble = derive2 { name="hpackedbubble"; version="0.1.0"; sha256="1br7q4958f1zgvisglsaf41nz2ahnqi3bzazvlfnmk3nq03cb1ri"; depends=[htmlwidgets]; }; hpcwld = derive2 { name="hpcwld"; version="0.5"; sha256="17k4mw41gygwgvh7h78m0jgzh1bivrvrsr8lgxxw3sbkw88lwb40"; depends=[multicool partitions]; }; hpiR = derive2 { name="hpiR"; version="0.3.2"; sha256="0gz9ngnjgys7hzijsma2iyywwiv7vjar5gls28ds11wq8pmsv96n"; depends=[dplyr forecast ggplot2 gridExtra imputeTS lubridate magrittr MASS pdp plyr purrr ranger rlang robustbase zoo]; }; @@ -8936,31 +9250,32 @@ in with self; { hrIPW = derive2 { name="hrIPW"; version="0.1.3"; sha256="1ns0mxkcfs2jva4wsbqkybgasgyxvxlcfxayky6lrfhic8jxvmg4"; depends=[survival]; }; hrbrthemes = derive2 { name="hrbrthemes"; version="0.8.0"; sha256="057h60b5p53dcyjyfwlgjc1ry968s9s64dw78p443w8717zk7zpc"; depends=[extrafont gdtools ggplot2 htmltools knitr magrittr rmarkdown scales]; }; hrcomprisk = derive2 { name="hrcomprisk"; version="0.1.1"; sha256="0w0ij2yqgg6gkn3pdaism1xqw3dfnm670j2pmsd85qk1ybxzq9l5"; depends=[survival]; }; - hscovar = derive2 { name="hscovar"; version="0.2.1"; sha256="0cy3x96dmw6cbsrnl3h1npzhxqy8bqy2437kz06qi7d5hmi4q721"; depends=[foreach Matrix pwr rlist]; }; - hsdar = derive2 { name="hsdar"; version="1.0.1"; sha256="1apcch51hagrbm7x3s7wl78bm2mpyxg4py7syz37b58r9dph1905"; depends=[caret raster rgdal signal]; }; + hscovar = derive2 { name="hscovar"; version="0.4.0"; sha256="087q3mx6zb5rpycq86v6g3d4x8m24r2ma2s1f4532frl3pg8xcj5"; depends=[foreach Matrix pwr rlist]; }; + hsdar = derive2 { name="hsdar"; version="1.0.3"; sha256="1slb2m62j86hn1kvpv72fvp48sxl7zb2znrr70jqqbrah8n1ynnl"; depends=[Boruta caret raster rgdal signal]; }; hsicCCA = derive2 { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; }; hsm = derive2 { name="hsm"; version="0.2.0"; sha256="066shjikqrrkxpnra4zknax1a0sk5nx9ms1br58vwqqvqq479rym"; depends=[]; }; hsmm = derive2 { name="hsmm"; version="0.4"; sha256="1fh8c5kfv4brygdq6bfkrhrhkm99mxl4ljb1mhp9nf2bjlla11mc"; depends=[mvtnorm]; }; hsphase = derive2 { name="hsphase"; version="2.0.2"; sha256="1b62k9sc6604djy37anslvqjpbrj9wsc9mvnfbrnmhqf4g0nnpdq"; depends=[Rcpp RcppArmadillo snowfall]; }; - hsrecombi = derive2 { name="hsrecombi"; version="0.1.3"; sha256="1b74dq0hry1867zsv52fpxspq1hzzrdvplkfr6n4zg3p9wf2kkxd"; depends=[data_table dplyr hsphase Rcpp rlist]; }; - hsstan = derive2 { name="hsstan"; version="0.6"; sha256="14k63agcq8m2lg5pw2309pi78950254v3z2m92pl4wjsikmsqrc1"; depends=[BH ggplot2 loo pROC Rcpp RcppEigen rstan rstantools StanHeaders]; }; + hsrecombi = derive2 { name="hsrecombi"; version="0.3.0"; sha256="0k4cb4b054gr7cr38v6h0l0m4rbafvls2qq425b167zjf99l567v"; depends=[data_table dplyr hsphase quadprog Rcpp rlist]; }; + hsstan = derive2 { name="hsstan"; version="0.8"; sha256="1milwygwn3djd5rv7x03wp6l02gdvaxnm4zhm56fwm64jbk5z3yg"; depends=[BH ggplot2 loo pROC Rcpp RcppEigen rstan rstantools StanHeaders]; }; htdp = derive2 { name="htdp"; version="0.1.4"; sha256="0w579qp0p544xryb5r08m1nhqf7rmgv9q0lyx6my4av62l70ka5w"; depends=[Rcpp]; }; + htestClust = derive2 { name="htestClust"; version="0.2.0"; sha256="1nwj74w5hyz929jz2qci12x1zpk9gva75gn68k70l6xc5vya60qn"; depends=[bootstrap MASS]; }; htm2txt = derive2 { name="htm2txt"; version="2.1.1"; sha256="09q026yy8qm1fb3a4bf9vsp4j09kayl7xmk0p58ikar5l3bmfdjv"; depends=[]; }; - htmlTable = derive2 { name="htmlTable"; version="1.13.3"; sha256="0g9r156k9yl1f092hfw3b9wjx11akf0shbi3x0d0mvpnflvc8nfl"; depends=[checkmate htmltools htmlwidgets knitr magrittr rstudioapi stringr]; }; + htmlTable = derive2 { name="htmlTable"; version="2.0.1"; sha256="0ma52kajzxfg9w811d6ldhghzn9xhyr8bh7k5v265k82bzx7rac6"; depends=[checkmate htmltools htmlwidgets knitr magrittr rstudioapi stringr]; }; htmltab = derive2 { name="htmltab"; version="0.7.1.1"; sha256="0nmb8zq6n13zj4rzgg74xpc6y8vkkwn8cqnyszq5h23gnn61inyl"; depends=[httr XML]; }; htmltidy = derive2 { name="htmltidy"; version="0.5.0"; sha256="1djkjff3750fm1sp54kf9cjvsqz2x7ia1ns12h5vqqcvwzfd0701"; depends=[htmltools htmlwidgets Rcpp XML xml2]; }; - htmltools = derive2 { name="htmltools"; version="0.4.0"; sha256="06l17d8jkf438yk2mchpsp4j90bynnapz3nabh5vkcc324p5a62v"; depends=[digest Rcpp rlang]; }; + htmltools = derive2 { name="htmltools"; version="0.5.0"; sha256="07fjznax5sin563ddnzlb7iwc8b39wzf7ymjn66pbmxgskijq2pz"; depends=[base64enc digest rlang]; }; htmlwidgets = derive2 { name="htmlwidgets"; version="1.5.1"; sha256="10fp306l1nybkah6jrlrqwwdb6zvklbddp8i3w9v9naj8la5jbnl"; depends=[htmltools jsonlite yaml]; }; htree = derive2 { name="htree"; version="2.0.0"; sha256="15bi5c2p4aghihp3k12s78447j2x9hbsaq56b5lc8jmd1vf0jdwb"; depends=[]; }; - hts = derive2 { name="hts"; version="6.0.0"; sha256="17bqby360fnl7gzy6a8immpp711abdj5lf7kvjv13zypgrix3cn9"; depends=[forecast Matrix matrixcalc Rcpp RcppEigen SparseM]; }; - httk = derive2 { name="httk"; version="2.0.1"; sha256="02msk6nb3sscww7pa68finfvpmrf8z4jsw08672q4qz50sjccjlp"; depends=[data_table deSolve magrittr msm mvtnorm purrr survey truncnorm]; }; + hts = derive2 { name="hts"; version="6.0.1"; sha256="0bbg7p9iqi3azl7m2vh9ggfdi90c9hy31fm5p0w9ixmvvavwhny6"; depends=[forecast Matrix matrixcalc Rcpp RcppEigen SparseM]; }; + httk = derive2 { name="httk"; version="2.0.2"; sha256="1j48swmnmsjsza31k7b55bakhy7j6sbf3gsv7qn5apxs0j9jdjki"; depends=[data_table deSolve magrittr msm mvtnorm purrr survey truncnorm]; }; httpRequest = derive2 { name="httpRequest"; version="0.0.10"; sha256="0f6mksy38p9nklsr44ki7a79df1f28jwn2jfyb6f9kbjzh98746j"; depends=[]; }; httpcache = derive2 { name="httpcache"; version="1.1.0"; sha256="11hdc1jj2jbgvsps1h55azq0cr2fl556k631ns9k0747sjfmy2k9"; depends=[digest httr]; }; httpcode = derive2 { name="httpcode"; version="0.3.0"; sha256="0xig0rvc81hg7mw0iq9s0an1nw24fg0kfs2p2n6dzhwl9w506fjr"; depends=[]; }; httping = derive2 { name="httping"; version="0.2.0"; sha256="0hdcf51yak8yagy4xj9cyck934lgmvpkd08jvlql33ir5mqvvv3i"; depends=[httpcode httr jsonlite magrittr pryr]; }; httptest = derive2 { name="httptest"; version="3.3.0"; sha256="1xcq0siyjb17yggaycxgp3byi276vwfa71450zbbzcb8617wsapd"; depends=[curl digest httr jsonlite testthat]; }; - httpuv = derive2 { name="httpuv"; version="1.5.2"; sha256="13ax0hs2lc39ilznh1zarwqdzahcbhb8adilrfik3xg0fkljpcwk"; depends=[BH later promises R6 Rcpp]; }; - httr = derive2 { name="httr"; version="1.4.1"; sha256="0mp1il13q6n49n2hv1p2p8x6avjan6dr5az19ql4hb78pc3pwp37"; depends=[curl jsonlite mime openssl R6]; }; + httpuv = derive2 { name="httpuv"; version="1.5.4"; sha256="066rprqvz9qln6xd85x1yh1wbbmzd157xjl8zq1zbgr8l6347inm"; depends=[BH later promises R6 Rcpp]; }; + httr = derive2 { name="httr"; version="1.4.2"; sha256="1y8y1g1dkgv9jafrk1kj6pzxpw95c0rr9lplblfq2byrs1pfsas6"; depends=[curl jsonlite mime openssl R6]; }; hues = derive2 { name="hues"; version="0.2.0"; sha256="062i7yc16nmnp15c1jh4xffw2lpklp36wkn1yvagh186ahnlgffx"; depends=[colorspace]; }; huge = derive2 { name="huge"; version="1.3.4.1"; sha256="11m80dnaxqw5v006q6kvhndl2y5ih5553fcqg4jcaljd8sp9xvvq"; depends=[igraph MASS Matrix Rcpp RcppEigen]; }; humanFormat = derive2 { name="humanFormat"; version="1.0"; sha256="0zwjbl8s5dx5d57sfmq6myc6snximc56zl88h8y1s1jqphyn9sir"; depends=[testthat]; }; @@ -8973,19 +9288,21 @@ in with self; { hurricaneexposure = derive2 { name="hurricaneexposure"; version="0.1.1"; sha256="0a8xy71dkq2bzdnc90irxmbcxhi0anh87ic22x7b22c3m5605w6s"; depends=[data_table dplyr ggmap ggplot2 lazyeval lubridate mapproj maps purrr RColorBrewer rlang stringr tidyr]; }; hutils = derive2 { name="hutils"; version="1.5.1"; sha256="1x2x8gg2hdwxj1gz81pjls4y3yilssksirsbjnjd665rjs3jx7fj"; depends=[data_table fastmatch magrittr]; }; hutilscpp = derive2 { name="hutilscpp"; version="0.3.0"; sha256="1x7h1fq6qyylda8k3a1v6s0cx7pf169k86akb6ccwgiikqqsp51h"; depends=[data_table hutils Rcpp]; }; - huxtable = derive2 { name="huxtable"; version="4.7.1"; sha256="0nkx6kpvh4z0fby7cv9bvripkqdha4f4c893h53a543q0ap06pjh"; depends=[assertthat generics glue memoise rlang stringr tibble tidyselect]; }; + huxtable = derive2 { name="huxtable"; version="5.0.0"; sha256="0b9aznqnf3jmyxqgc23v2pp4sixikqrpiqnmaxvn1rhn2l8n7bh1"; depends=[assertthat commonmark generics glue memoise rlang stringr tidyselect]; }; hwde = derive2 { name="hwde"; version="0.67"; sha256="0wb2f9i5qi7w77ygh8bvydfpr7j5x8dyvnnhdkajaz0wdcpkyaqy"; depends=[]; }; - hwig = derive2 { name="hwig"; version="0.0.1"; sha256="0i9is1izwi82gcrngi1k6q6aq548rqpccvs3mp74jinqsw51czcf"; depends=[asnipe data_table spatsoc]; }; hwordcloud = derive2 { name="hwordcloud"; version="0.1.0"; sha256="0civbwv276lcwvfs4qzz14r8rk14kg1ml4zzhi3msnkkh29v70y2"; depends=[colourpicker htmlwidgets shiny wordcloud2]; }; hwriter = derive2 { name="hwriter"; version="1.3.2"; sha256="0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb"; depends=[]; }; hwwntest = derive2 { name="hwwntest"; version="1.3.1"; sha256="1mz5svx5vbisdl5wxdnwip13pq4slyigc7j52l526rr9n0l0pr5v"; depends=[polynom wavethresh]; }; + hySpc_testthat = derive2 { name="hySpc.testthat"; version="0.2.1"; sha256="12za828sw2al3aa236ksmnwxpy2sqw8gl8b3p3vvrjk1l31l1qcm"; depends=[testthat]; }; hybridEnsemble = derive2 { name="hybridEnsemble"; version="1.0.0"; sha256="08y11cmlhnl456wxsvh3ll1f9ywkmgqjwlwr3v3qhm54nlanwvkr"; depends=[ada AUC e1071 FNN genalg GenSA glmnet kernelFactory NMOF nnet nnls pso quadprog randomForest reportr Rmalschains ROCR rotationForest rpart soma tabuSearch]; }; - hybridModels = derive2 { name="hybridModels"; version="0.3.6"; sha256="15405qz4fnvid7ka1l694hcc7s6yv39ff62rsdl7jhzq468qkikj"; depends=[doParallel doRNG foreach ggplot2 GillespieSSA reshape2 stringr]; }; + hybridModels = derive2 { name="hybridModels"; version="0.3.7"; sha256="0fj3dvv7s1hlicvlb077pkhbj894brzgdxhp67jck9zpy2qymzxq"; depends=[doParallel doRNG foreach ggplot2 GillespieSSA reshape2 stringr]; }; hydra = derive2 { name="hydra"; version="0.1.0"; sha256="0r3r8cds4h15narawxhzkrvgnf00vlgrgqdgnmbzjyyb1dmry8wn"; depends=[]; }; + hydraulics = derive2 { name="hydraulics"; version="0.2.1"; sha256="08xqq9f0rzl64n61l7xjcm1s096vgvqb5s7hj1lds6rzww8gbljg"; depends=[ggplot2 reshape2]; }; hydroApps = derive2 { name="hydroApps"; version="0.1-1"; sha256="1ycv7l2ywwnx2mgklg6rry7n24jyhi4spvp1xl345yvyn9kf15dz"; depends=[nsRFA]; }; hydroGOF = derive2 { name="hydroGOF"; version="0.4-0"; sha256="0fw8b66k7gdkdjxgmdpp3lk9d8p0wmlvhq2rkcvajjb5wd09f43a"; depends=[hydroTSM xts zoo]; }; - hydroPSO = derive2 { name="hydroPSO"; version="0.5-0"; sha256="1g7h4x9d0kadpvcpw6km8mp6d913ff0wjavxz1dcxrz3ix7z7bza"; depends=[data_table Hmisc hydroGOF hydroTSM lattice lhs scatterplot3d sp vioplot zoo]; }; + hydroPSO = derive2 { name="hydroPSO"; version="0.5-1"; sha256="16gdv19yqla80s9fjmvahfn21jv62zivirzs5ch4zm9db54g6bry"; depends=[data_table Hmisc hydroGOF hydroTSM lattice lhs scatterplot3d sp vioplot zoo]; }; hydroTSM = derive2 { name="hydroTSM"; version="0.6-0"; sha256="1msavd2k05apsky88zkk1l3c6y3v95fwhmr6xmwsap70bj25krsv"; depends=[automap e1071 gstat lattice maptools sp xts zoo]; }; + hydroToolkit = derive2 { name="hydroToolkit"; version="0.1.0"; sha256="0bij4365hczvq17wj9hp0570v35m8ili11mp9dzfj3mvhhqrc9p4"; depends=[ggplot2 lubridate plotly readxl reshape2]; }; hydrogeo = derive2 { name="hydrogeo"; version="0.6-1"; sha256="16m6yvr9yhvb0vdh9pqd6gzf3h9km7gd89y6risjddv6g83469k8"; depends=[]; }; hydrolinks = derive2 { name="hydrolinks"; version="0.10.0"; sha256="0004a03bx9l9wq6zdz5az41rjxv1ka4qmnxk6ksy8i7365wsay88"; depends=[dbplyr dplyr httr rappdirs RSQLite sf units]; }; hydroscoper = derive2 { name="hydroscoper"; version="1.3"; sha256="03g841a1sbhp2kcdl39b9577lyd9i1241smn41578dcyrxshc2in"; depends=[jsonlite pingr readr stringi stringr tibble]; }; @@ -8994,7 +9311,7 @@ in with self; { hyper_fit = derive2 { name="hyper.fit"; version="1.1.1"; sha256="1xibiydfkhzsw0yqfc0xfzj4yz8xyxqlvnfpyxg33v5fwp9wap3v"; depends=[LaplacesDemon magicaxis MASS rgl]; }; hyper2 = derive2 { name="hyper2"; version="1.0-7"; sha256="155ycb26mgk0ic899ji1pv1k2mmwfzwaa0zj38a9v6fwdgw87rpl"; depends=[cubature magrittr partitions Rcpp]; }; hyperSMURF = derive2 { name="hyperSMURF"; version="2.0"; sha256="1aczsph6ax5xfd5rfvsd9bmgaq3j2f5f82fx8whrgbin0hxz19d8"; depends=[randomForest unbalanced]; }; - hyperSpec = derive2 { name="hyperSpec"; version="0.99-20200213.1"; sha256="1a1isalw10i7gqhxl0hi6qklv5x089bxhi2jg9fbbk0vw4axr2yx"; depends=[dplyr ggplot2 lattice latticeExtra lazyeval testthat xml2]; }; + hyperSpec = derive2 { name="hyperSpec"; version="0.99-20200527"; sha256="0j3k8akb1v4sxjjhws2yd50jjg36k1yxb9vvvy2wabdba9v6y9r9"; depends=[dplyr ggplot2 lattice latticeExtra lazyeval testthat xml2]; }; hypercube = derive2 { name="hypercube"; version="0.2.1"; sha256="0m0n64rl5fnhvhfdknrza8a0h5lw8vbgakaqbyfx77ixhwqhjn1l"; depends=[dplyr plotly stringr]; }; hypergate = derive2 { name="hypergate"; version="0.8.3"; sha256="0h36wi4bdxinv7p9alyb7jv1902vdanxx7yvyaw2dcqkdjlzzj49"; depends=[]; }; hypergea = derive2 { name="hypergea"; version="1.3.6"; sha256="1k1525bkkj83j2nn9ixidb8vjvdmc4l9jvfarzgg532gg7wn3841"; depends=[]; }; @@ -9003,22 +9320,23 @@ in with self; { hypervolume = derive2 { name="hypervolume"; version="2.0.12"; sha256="0jd49jncmg23vm9rkcy6sd4zjwlw75hwps7wahpb36zs9kb63ssq"; depends=[data_table e1071 fastcluster geometry hitandrun ks maps MASS mvtnorm pdist progress raster Rcpp RcppArmadillo rgeos rgl sp]; }; hypothesestest = derive2 { name="hypothesestest"; version="1.0"; sha256="0g8sm386m1zm9i3900r62x83wb600cy8hqk7dlvbx6wcgrxg82sm"; depends=[]; }; hypothesisr = derive2 { name="hypothesisr"; version="0.1.1"; sha256="0z06risagphhvqiw4lrxy52q6q2yr10w2yxsm8iz1wh9ik097pcv"; depends=[dplyr httr jsonlite]; }; - hypr = derive2 { name="hypr"; version="0.1.6"; sha256="01zn533q43221542m24ybnyx5lhb6sz76qqzfglsaq794l8sr0my"; depends=[MASS pracma]; }; - hystReet = derive2 { name="hystReet"; version="0.0.1"; sha256="08zdsyh82xvnbybwnz5015ds0pcqqid339pvmm3044filk46vyki"; depends=[httr jsonlite lubridate]; }; + hypr = derive2 { name="hypr"; version="0.1.9"; sha256="0sai8bbrxll8sbmgp3jxzk543gcr9clvxga7bzrfsp5kxkclsjak"; depends=[MASS pracma]; }; + hystReet = derive2 { name="hystReet"; version="0.0.2"; sha256="01nrbk48r1hf1yc953yf1pzryzrjjckwdqhb3pbnwfza8q0aqsfq"; depends=[httr jsonlite lubridate]; }; hysteresis = derive2 { name="hysteresis"; version="2.6"; sha256="00v19m52bg2i3zg8p7yj56axzj9sm64qr61226p5h7sn0zrpws3b"; depends=[car MASS msm]; }; hzar = derive2 { name="hzar"; version="0.2-5"; sha256="000l4ki3hvznnhkxc5j422h5ifnsfqalv666j48yby1hsf1lc3kg"; depends=[coda foreach MCMCpack]; }; + i2dash = derive2 { name="i2dash"; version="0.2.1"; sha256="0hb0ggwm8q0w01isvayb1q4bdl3dvdxixsfjzhqcwh6jp2rn8yaa"; depends=[assertive_sets assertive_types flexdashboard glue knitr magrittr rmarkdown stringi stringr yaml ymlthis]; }; iAdapt = derive2 { name="iAdapt"; version="0.1.0"; sha256="0ykcvqm1aswc4iypapml22194nxi6mxvxipy6wj7l9g4cazfa8j8"; depends=[shiny shinydashboard]; }; iBATCGH = derive2 { name="iBATCGH"; version="1.3"; sha256="0pnkkabzi57czcwd9i15nwv8ggwvyxmvn1wam7yrrrbvmi17lmrm"; depends=[msm Rcpp RcppArmadillo]; }; iBST = derive2 { name="iBST"; version="1.0"; sha256="02p7lcr1wrf21v4568jc8hmjcijy3fnbv77s8nlhv2s4p0pgzh5x"; depends=[Rcpp rpart survival]; }; - iBreakDown = derive2 { name="iBreakDown"; version="1.2.0"; sha256="0y4zjpyn8j76jrs5phjzs5lfq3lqjspmrwcksqv9wq0rbdgh14vk"; depends=[ggplot2]; }; + iBreakDown = derive2 { name="iBreakDown"; version="1.3.1"; sha256="1bfl5bh0x6z5a0cmdmx68sap9zdxa3kwdnyk57csxapc362yz108"; depends=[ggplot2]; }; iC10 = derive2 { name="iC10"; version="1.5"; sha256="1xq6xv582wxdb0nc2nia3q38155gx8z26idiqyx7h1rjb20hhwdl"; depends=[iC10TrainingData impute pamr]; }; iC10TrainingData = derive2 { name="iC10TrainingData"; version="1.3.1"; sha256="175ymib3h359296hk36psryksisipx63ybvacz8hys21irzx58j1"; depends=[]; }; - iCARH = derive2 { name="iCARH"; version="2.0.1.1"; sha256="0722dfydq16vhdk7hrdwngkppq0g20ghak614jfnrfr6rnrn630s"; depends=[abind ggplot2 igraph KEGGgraph MASS Matrix mc2d RCurl reshape2 rstan]; }; - iCellR = derive2 { name="iCellR"; version="1.4.5"; sha256="1pw2pnpp2q2h8iipilbaw6mdm7dkgrw5p7ya1zap04m005jzvap0"; depends=[ape ggdendro ggplot2 ggpubr ggrepel gridExtra hdf5r Hmisc htmlwidgets igraph knitr Matrix NbClust pheatmap plotly plyr progress RColorBrewer reshape Rtsne scatterplot3d shiny uwot]; }; + iCARH = derive2 { name="iCARH"; version="2.0.2.0"; sha256="04wwdkxql104k223hvmhs0if062ryzcf4w4dciz1pd2d4dnljpxf"; depends=[abind ggplot2 glue igraph KEGGgraph MASS Matrix mc2d RCurl reshape2 rstan]; }; + iCellR = derive2 { name="iCellR"; version="1.5.5"; sha256="0y801yjzwcrmf8arndbwqw3fkbmbgwx4kla6pdy1lvnz693h7s67"; depends=[ape data_table ggdendro ggplot2 ggpubr ggrepel gridExtra hdf5r Hmisc htmlwidgets igraph knitr Matrix NbClust pheatmap plotly plyr progress RANN RColorBrewer Rcpp reshape Rtsne scatterplot3d shiny uwot]; }; iCiteR = derive2 { name="iCiteR"; version="0.2.1"; sha256="0hbps2q5i7yj6zvqawlayhqqr5iv39yqc0xnk7fvra7rimzc1qid"; depends=[httr]; }; iClick = derive2 { name="iClick"; version="1.5"; sha256="0yq0r9nz1mf9ci6l30ylqxbgl8mf1ahyqzr7m6nks0ygxabipdnd"; depends=[boot car coefplot fBasics forecast lattice lmtest lubridate openair papeR rugarch sandwich timeDate timeSeries xts zoo]; }; iCluster = derive2 { name="iCluster"; version="2.1.0"; sha256="09j36xv87d382m5ijkhmp2mxaajc4k97cf9k1hb11ksk7fxdqz6r"; depends=[caTools gdata gplots gtools lattice]; }; - iDINGO = derive2 { name="iDINGO"; version="1.0.3"; sha256="0aa7g7shcbjzjwhnrh6hd4idjdka9rd7jawkvqvyjnwcql2qlapv"; depends=[GGMridge glasso igraph mvtnorm scales visNetwork]; }; + iDINGO = derive2 { name="iDINGO"; version="1.0.4"; sha256="00x9q73y2a1bxnbqv18sjp7nrbj1bk56rzhmllpnllwy8k9dw31j"; depends=[GGMridge glasso igraph mvtnorm scales visNetwork]; }; iDOS = derive2 { name="iDOS"; version="1.0.0"; sha256="1jj98ikzvfp6qbnh2j6msi0m89sbmjjafgry43rq7qmczzs81hl8"; depends=[VennDiagram]; }; iDynoR = derive2 { name="iDynoR"; version="1.0"; sha256="01702vl10191mbq2wby1m0y6h8i6y6ic4pa83d27cg3yccsrhziz"; depends=[vegan XML]; }; iFad = derive2 { name="iFad"; version="3.0"; sha256="0jrl9bayihp3wb4k5w9kc71qlsdxk7vl83ydfibx2bg79c4hf3cs"; depends=[coda MASS Rlab ROCR]; }; @@ -9028,25 +9346,30 @@ in with self; { iMRMC = derive2 { name="iMRMC"; version="1.2.2"; sha256="12ljry3gqzqjk72ndc557pn6jz3c23y5hcjlphw4kggrz7wb7b91"; depends=[]; }; iMediate = derive2 { name="iMediate"; version="0.5.5"; sha256="1lwhrzm4g2fcazh782g7p11v5pyx165ig1dzgkmdmjffpwk0w8b4"; depends=[MBESS mvtnorm plotly]; }; iNEXT = derive2 { name="iNEXT"; version="2.0.20"; sha256="14bagsb0ja3j53i0g4a2ax2gj7lyc6sjcc7isdjx94clbnc2zcsg"; depends=[ggplot2 reshape2]; }; - iNZightTools = derive2 { name="iNZightTools"; version="1.8.3"; sha256="1sf3gsxss4xnncjrlw49ljvlzz70zckq14mm5n6kmsz9nwaay2jk"; depends=[chron dplyr forcats haven lubridate magrittr readr readxl stringr survey tibble tidyr validate zoo]; }; + iNZightMR = derive2 { name="iNZightMR"; version="2.2.5"; sha256="1zxvlz0wyf4n2kpyk82grlww71agvfqp3apswbrimpvi13c9nzhl"; depends=[]; }; + iNZightTS = derive2 { name="iNZightTS"; version="1.5.2"; sha256="08c79rs1iigdbkbkcfaffs92ci27igd0rbh3z4472811819dyg9x"; depends=[dplyr egg forcats ggplot2 gridExtra magrittr rlang tidyr]; }; + iNZightTools = derive2 { name="iNZightTools"; version="1.9.0"; sha256="0wyywxsyig50g3k6jragiv9zqzdsiqwybc997w3ah1bmv6vds7rz"; depends=[chron dplyr forcats haven lubridate magrittr readr readxl stringr survey tibble tidyr validate zoo]; }; iRF = derive2 { name="iRF"; version="2.0.0"; sha256="1ll4lxg743p2zipxcq13yjsc7j7dk766dcyixwxilllbisg0dh8y"; depends=[AUC data_table doParallel dplyr foreach Matrix RColorBrewer Rcpp]; }; iRafNet = derive2 { name="iRafNet"; version="1.1-1"; sha256="0w9bry49apkrrrabglnv5w9l47jakmc30jh8q22a8gazwss293fb"; depends=[ROCR]; }; iRegression = derive2 { name="iRegression"; version="1.2.1"; sha256="1kwsrmsflmqan96aj0dczlszfww1dlg6rwycyid52f7ghg9810rn"; depends=[mgcv]; }; iRepro = derive2 { name="iRepro"; version="1.1"; sha256="1sqg1n83m1308v6bk8ilra8w01frqyd8vpvmv63rllxz38r3vyhz"; depends=[]; }; iSDM = derive2 { name="iSDM"; version="1.0"; sha256="1hzs187mwv3k2wx6dpvkizjhkcx63mznd06wiw6047lf5jrlif0a"; depends=[ade4 colorRamps geometry geosphere maptools MASS pdist raster rgdal rgl sp virtualspecies]; }; - iSTATS = derive2 { name="iSTATS"; version="1.2"; sha256="0ddkgszkihlpfi3vq3m3jyr293471vgj27c5frpap0bs404lhqh8"; depends=[Cairo data_table ggplot2 gtools plotly rstudioapi shiny shinyBS shinyWidgets]; }; + iSTATS = derive2 { name="iSTATS"; version="1.5"; sha256="14pd3k8w8hh7gl2iskax2pck6z96hdfrws5l69zdw02867bny404"; depends=[Cairo data_table ggplot2 gtools plotly rstudioapi shiny shinyBS shinyWidgets]; }; iTOP = derive2 { name="iTOP"; version="1.0.2"; sha256="1n6nlmmx2h63nksycgzr7qsnd1j6bxa629av7cfd3ihriim7dj47"; depends=[corpcor Matrix]; }; iWISA = derive2 { name="iWISA"; version="1.0-2"; sha256="0jqi1kh7jlc04nb9d1w711q4i8j1vgwbxjls09z7853kv22wxfyz"; depends=[fda ggplot2 waveslim]; }; iWeigReg = derive2 { name="iWeigReg"; version="1.0"; sha256="09ajbqllr4ajmpk8qs6qw019fx8a7vsabm37867zycssn77z9nc8"; depends=[MASS trust]; }; iZID = derive2 { name="iZID"; version="0.0.1"; sha256="1jaqdh6i5xyfw4y2wd9qivzjklf4j2xxnya8ssn7rv5bz6misgcz"; depends=[doParallel extraDistr foreach rootSolve]; }; iadf = derive2 { name="iadf"; version="0.1.1"; sha256="0ys8rd05s0j6cs7snmp1car7lp7k4awvs8gnlqaw9zcd7w7k9r06"; depends=[dplR dplyr manipulate rlang tibble tidyr tidyselect]; }; - iai = derive2 { name="iai"; version="1.2.0"; sha256="0v1xsnhx73ldpsbnki5g0q86dih1pcgb1f10mmq7dn47s2mm6zxg"; depends=[JuliaCall rlang stringr]; }; + iai = derive2 { name="iai"; version="1.3.0"; sha256="0xp3j3w7aazcqnrix1qh5iwjsias61fxw5bhhsm2d93arfnd27d5"; depends=[JuliaCall lifecycle rlang stringr]; }; iarm = derive2 { name="iarm"; version="0.4.1"; sha256="1z0k970sk8qliknfsz88yij1aigf0dxk43h92iwg17xi64hvjs11"; depends=[eRm ggplot2 gridExtra Hmisc PP psychotools vcdExtra]; }; + ibb = derive2 { name="ibb"; version="0.0.1"; sha256="0k2k2qsf11jcn12qm6823hv5ilnf70r0mdskgzjww4mi66kr5lzx"; depends=[dplyr httr jsonlite xml2]; }; ibd = derive2 { name="ibd"; version="1.5"; sha256="0rxvy4hn4fpbv6y214ggkmgfvzwns5mkanp4h8201rjk3v84mk2r"; depends=[car emmeans lpSolve multcomp]; }; - ibdreg = derive2 { name="ibdreg"; version="0.2.5"; sha256="1kaa5q1byi30wzr0mw4w2cv1ssxprzcwf91wrpqwkgcsdy7dkh2g"; depends=[]; }; + ibdreg = derive2 { name="ibdreg"; version="0.3.1"; sha256="0kgx9iavgm6d6njhki7bm82d6lw2c7kcch2pryd339js2hm0l5gq"; depends=[]; }; + ibdsim2 = derive2 { name="ibdsim2"; version="1.2"; sha256="15780iz0pijlmx0pzwkvwkyqd0nkgyxqlsm9wiln45fdwz6gbj32"; depends=[ggplot2 glue pedtools Rcpp ribd]; }; ibeemd = derive2 { name="ibeemd"; version="1.0.1"; sha256="115z13q02gzixziknix2l53mi12zzg30ra9h35pv6qzrr11ra1ic"; depends=[deldir fields rgeos sp spdep]; }; ibelief = derive2 { name="ibelief"; version="1.3"; sha256="15jafk5b954hsl5kkbiyr8pi385c92il05jls33lyf4i25q5aqk3"; depends=[]; }; ibm = derive2 { name="ibm"; version="0.1.0"; sha256="0g6wg2qpa4q142xw2vq5pca4ll6pb8hyll5g0c93kk8crddk51s7"; depends=[Rcpp]; }; + ibmAcousticR = derive2 { name="ibmAcousticR"; version="0.1.2"; sha256="06b7p6bqr5clbwghkqlz669nj6slblx4wqxhjpnr4rb690wbcy16"; depends=[httr jsonlite XML]; }; ibmcraftr = derive2 { name="ibmcraftr"; version="1.0.0"; sha256="0zm5j0a1wjj5agibp38h73qxpq0njvrhfq3077xhhfizcb3v24sb"; depends=[Rcpp]; }; ibmdbR = derive2 { name="ibmdbR"; version="1.50.0"; sha256="151gg05gcy5wpyvyflr4mc0jq1npxzq9pc4spjc81x2igd14c370"; depends=[arules ggplot2 MASS Matrix RODBC rpart rpart_plot]; }; ibmsunburst = derive2 { name="ibmsunburst"; version="0.1.1"; sha256="0dxsdsimqgs7lbbfx7h8l2r6xpwgy2r7cf2y1v8hkgapf6n5kjnk"; depends=[htmlwidgets jsonlite]; }; @@ -9060,20 +9383,19 @@ in with self; { icapca = derive2 { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; }; icarus = derive2 { name="icarus"; version="0.3.1"; sha256="0ipbhzvwdn1cnzgdw33cwv901768srxfi588bimjx2ssl80mqn3a"; depends=[]; }; iccbeta = derive2 { name="iccbeta"; version="1.2.0"; sha256="03ms1c8qpbgxabj3hh4n0gwcazw6cd0cvixck5rz8fkvj04xzjak"; depends=[lme4 Rcpp RcppArmadillo]; }; + icd = derive2 { name="icd"; version="4.0.9"; sha256="177wwya4fcb2jc33j9xd838ayyqwxgd77a9fi2hd9h8afxz3g12c"; depends=[Rcpp RcppEigen]; }; icd_data = derive2 { name="icd.data"; version="1.0"; sha256="0cynr9327wfg88661w4hali48mb6ghyvlqgybsa38k9bbf57v8aa"; depends=[]; }; icdGLM = derive2 { name="icdGLM"; version="1.0.0"; sha256="1mh9kwn21n19v4lrmj33ghpna7dl66fx19gi6lcjanmrpzrkwdnz"; depends=[Matrix]; }; icemelt = derive2 { name="icemelt"; version="1.0"; sha256="13pjbyh2ggns36m8s43m2cb0kvisjlfxq75gqscldp75zjli2wi8"; depends=[survival]; }; - icenReg = derive2 { name="icenReg"; version="2.0.13"; sha256="1kyzvhcrmafprwdpc4dhjdg8dxf0zic4r22hzdnah9rfihds086l"; depends=[coda foreach MLEcens Rcpp RcppEigen survival]; }; + icenReg = derive2 { name="icenReg"; version="2.0.14"; sha256="0xszlq8kqb2bf5mv7kxrm5s7wla89ns3gizs3x5cyq710aqdla26"; depends=[coda foreach MLEcens Rcpp RcppEigen survival]; }; icensBKL = derive2 { name="icensBKL"; version="1.2"; sha256="1zzv80jnn8ilnc1gv4nj24l2fl8805rjhqjgkb0xx4y9zhpg1jkp"; depends=[gtools Icens MASS mvtnorm smoothSurv survival TeachingDemos]; }; icensmis = derive2 { name="icensmis"; version="1.3.1"; sha256="1c0j43wffb5h99chlj8j45lpan7dpn2i0r4rr6b2kq16p1zabfjw"; depends=[Rcpp]; }; icesAdvice = derive2 { name="icesAdvice"; version="2.0-0"; sha256="0sx93fsx2srmynnvs3bjb525m9a5w70qr9lghmkqa07crd991vfr"; depends=[]; }; icesDatras = derive2 { name="icesDatras"; version="1.3-0"; sha256="0yaqlximxa3rcjxgrd0mii02mm9gpcxgw3i8pymp00bk8zixvj30"; depends=[]; }; - icesSAG = derive2 { name="icesSAG"; version="1.3-6"; sha256="08nlsvs23j7ax03gwld3ycyvhfrhs70jdjif3562q1ysgvvkbf45"; depends=[httr icesVocab openssl png xml2]; }; - icesTAF = derive2 { name="icesTAF"; version="3.4-0"; sha256="1gsqcwz547g04x7ixrf7yiy0xf9p61fw2j7dqyj3y4wmfwll9wgz"; depends=[bibtex lattice]; }; - icesVocab = derive2 { name="icesVocab"; version="1.1-4"; sha256="0ydrxxmglgcsmjccamhfyw4cr2q583y4836v3wm2gxs5pcf9q86g"; depends=[XML]; }; + icesTAF = derive2 { name="icesTAF"; version="3.5-0"; sha256="1rirpwnr0z6y3yswb3v2w280a2lj2rn4xln0jxakxbrkjg87sin2"; depends=[bibtex lattice]; }; icmm = derive2 { name="icmm"; version="1.1"; sha256="1w9f1rniz67rrvq0akc64s5433ddmr2cgbcljil4c58yyz8hinx8"; depends=[EbayesThresh]; }; icosa = derive2 { name="icosa"; version="0.10.0"; sha256="1vd1qn1070rml7mygj9k13b96zrc77bw90g8f44s7wmhabn6214q"; depends=[igraph Rcpp sp]; }; - icpsrdata = derive2 { name="icpsrdata"; version="0.4.0"; sha256="01whs8wssjx3qgdnc1ixh59gvn1bajqm5q3zj1jpw1dqjh71qzf0"; depends=[httr purrr rvest]; }; + icpsrdata = derive2 { name="icpsrdata"; version="0.5.0"; sha256="024lda7619j8nxcj0d0myaqjsmyl9mqdyghd6imr29jxa2qhcm8y"; depends=[httr purrr rvest]; }; icr = derive2 { name="icr"; version="0.6.2"; sha256="1xqvzn02x13d706irv83zycpxhm8yq1c34rh1nphddy5gri7gwjb"; depends=[Rcpp]; }; icrf = derive2 { name="icrf"; version="1.0.0"; sha256="1qz4wv23hspbrfzrj80qmhi0759zh3gn23rnns18j3020f506jdd"; depends=[Icens]; }; icsw = derive2 { name="icsw"; version="1.0.0"; sha256="0g7bcqs0rpbs1p202i9wjbl8hhy3r196zambm044xyf7kvsbzzf6"; depends=[]; }; @@ -9082,74 +9404,86 @@ in with self; { idbr = derive2 { name="idbr"; version="0.3"; sha256="02syk7fmif0xnddl8189vnl329r8mwl3iwv2rsf6cw7mwg30fhyw"; depends=[countrycode dplyr httr jsonlite]; }; ideamdb = derive2 { name="ideamdb"; version="0.0.9"; sha256="1f4dcv6c8ny7pik547f4840vhll26mzfcijnfsiqx31xhn0gsizd"; depends=[dplyr ggplot2 stringr tidyr]; }; idefix = derive2 { name="idefix"; version="0.4.3"; sha256="1kpan1499n9paibrr5gc0n5s05ls64fx8raiwckc7hfzsnh1fb26"; depends=[dplyr MASS mlogit Rcpp RcppArmadillo Rdpack scales shiny tmvtnorm]; }; - idem = derive2 { name="idem"; version="4.0"; sha256="0zgc6b5gzgm5dhjqk1vkm94khizc8sngn3igv23z1v18g73vdxhi"; depends=[BH Rcpp RcppEigen rstan rstantools sqldf StanHeaders survival]; }; + idem = derive2 { name="idem"; version="5.0"; sha256="083vhr61ivr2a5xyrr1l1b52vlpm6fkjm3b6rbpkrn7qw6b4mv8c"; depends=[BH mice Rcpp RcppEigen rstan rstantools sqldf StanHeaders survival]; }; idendr0 = derive2 { name="idendr0"; version="1.5.3"; sha256="11c12d166bp2i498d8y6ipg5jhz1xsdsrmnhjqnrqqzp9avvrsjp"; depends=[tkrplot]; }; identity = derive2 { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; }; ideq = derive2 { name="ideq"; version="0.1.4"; sha256="06xk9ghvh3fb79lbkmbqsk07xj06qaigiw41rzbi3bji3fjq1prw"; depends=[matrixcalc mvtnorm pdist Rcpp RcppArmadillo rgen]; }; ider = derive2 { name="ider"; version="0.1.0"; sha256="021s4fybki7a6mdsr6gkjrzfhaqdcg0m2a6r24y91jklxlxqxmws"; depends=[FNN]; }; - idiogramFISH = derive2 { name="idiogramFISH"; version="1.14.7"; sha256="1cr7s2cw3dq0rh3k6hdgxhdmgpp3ynhjiikkn9f63lgrrgyzizgq"; depends=[crayon dplyr tidyr]; }; + idiogramFISH = derive2 { name="idiogramFISH"; version="1.16.1"; sha256="0qg27v8c26fz3dkzddc7fc1dpgc2csh7vh6rj5lc2kk4m3mjd3k4"; depends=[crayon dplyr tidyr]; }; idm = derive2 { name="idm"; version="1.8.2"; sha256="04f0i0kwdxywmj2i184knx5a5v9svx0lbam6wpz49hghg7qpy0w5"; depends=[animation ca corpcor dummies ggplot2 ggrepel]; }; idmTPreg = derive2 { name="idmTPreg"; version="1.1"; sha256="1329sjb4dnw3yiyg16whbj4l2v0kg8phg1x4ysvyp2kqkmw14yq6"; depends=[doParallel foreach survival]; }; - idmodelr = derive2 { name="idmodelr"; version="0.3.1"; sha256="147rlcm7dj20xbwi392w82m1mnw90mvcp4yjgfplm34z6y90ljir"; depends=[deSolve dplyr furrr future ggplot2 magrittr purrr rlang stringr tibble tidyr viridis]; }; + idmodelr = derive2 { name="idmodelr"; version="0.3.2"; sha256="02hvlmk38rs0iavwz0qa3ryvyw1ixhjf9bksmadlhxl5pd18016j"; depends=[deSolve dplyr furrr future ggplot2 magrittr purrr rlang stringr tibble tidyr viridis]; }; idr = derive2 { name="idr"; version="1.2"; sha256="05nvgw1xdg670bsjjrxkgd1mrdkciccpw4krn0zcgdf2r21dzgwb"; depends=[]; }; ids = derive2 { name="ids"; version="1.0.1"; sha256="1s6ga94gds5ydr9f8qbjfgfpg2dvbnkcrlybqlb33hk3c0c2l8dn"; depends=[openssl uuid]; }; idx2r = derive2 { name="idx2r"; version="1.0.0"; sha256="14d3rasnf8mghwzpg6h4larybgy7drrv0jh71x28qwry49acsqyh"; depends=[]; }; + ie2misc = derive2 { name="ie2misc"; version="0.8.6"; sha256="1kfqzl12ybxa4wgijww27hq2m9bjai2pc9lx6dg9ly7ki25crqpk"; depends=[data_table gWidgets2 gWidgets2tcltk lubridate mgsub openxlsx reader readxl stringi]; }; ieeeround = derive2 { name="ieeeround"; version="0.2-0"; sha256="0xaxrlalyn8w0w4fva8fd86306nvw3iyz44r0hvay3gsrmgn3fjh"; depends=[]; }; - iemisc = derive2 { name="iemisc"; version="0.9.8"; sha256="0xpgafv1zl3gxs3jydqni5icdz74n7f0bgbdvw8gykrr1a6rarln"; depends=[CHNOSZ data_table fpCompare gsubfn IAPWS95 iemiscdata pracma r_import rgdal sp stringi testit units zoo]; }; + iemisc = derive2 { name="iemisc"; version="0.9.9"; sha256="1hay4d85xw81cgzkm21db8mssqqb8cw4bsg3qypm59bqwmqpl8md"; depends=[CHNOSZ data_table fpCompare gsubfn iemiscdata pracma r_import rgdal sp stringi testit units zoo]; }; iemiscdata = derive2 { name="iemiscdata"; version="0.6.1"; sha256="0a9x90kisgmrka0frk9myb1qdq3nl092n78wrif31b42arifa8h9"; depends=[]; }; iemisctext = derive2 { name="iemisctext"; version="0.9.99"; sha256="02rr7sjjbrvfxwjl87f2ki245a8cw5fvx7z2z4rl8ixxlyxj9p5v"; depends=[]; }; ifa = derive2 { name="ifa"; version="7.0"; sha256="1cxafd7iwvyidzy27lyk1b9m27vk785ipj9ydkyx9z1v0zna2wnl"; depends=[mvtnorm]; }; ifaTools = derive2 { name="ifaTools"; version="0.21"; sha256="1vnrf67d0b83nmvk91sw1w2lgjlldp7dslxnrxh7lb94h3z6jigd"; depends=[ggplot2 OpenMx reshape2 rpf shiny]; }; ifctools = derive2 { name="ifctools"; version="0.3.2"; sha256="18g0l0vh9z4nvl6jil32983c4z1dvawrivi4kz4g562q3habm279"; depends=[]; }; ifs = derive2 { name="ifs"; version="0.1.5"; sha256="03g9cgs0zp89b1d7rpcn5clkvmg0spnariwrifd8hha476ldvfcy"; depends=[]; }; - ifultools = derive2 { name="ifultools"; version="2.0-5"; sha256="040kvbczcmmbaiaz0k0pdq9af541pjj6iwzh1a3w4szh9w6b5a3j"; depends=[MASS splus2R]; }; ig_vancouver_2014_topcolour = derive2 { name="ig.vancouver.2014.topcolour"; version="0.1.2.0"; sha256="0yclvm6xppf4w1qf25nf82hg1pliah68z7h3f683svv0j62q748h"; depends=[]; }; igate = derive2 { name="igate"; version="0.3.3"; sha256="0b8dk976z0764cmxwcq6w2f3akv7iivivharinq029p90b600qza"; depends=[dplyr ggplot2 kableExtra knitr rmarkdown stringr xtable]; }; + iglu = derive2 { name="iglu"; version="1.0.2"; sha256="1xs0qw0msqiajz1gpdv7q49iwbwyf3wrqjrs82mwidwpcdgzlkry"; depends=[caTools dplyr ggplot2 lubridate magrittr scales shiny tibble tidyr]; }; igraph = derive2 { name="igraph"; version="1.2.5"; sha256="126z1ygbmi3g7hk97snf22rnx680dyi30idssm5zacba5rdngp8c"; depends=[magrittr Matrix pkgconfig]; }; igraphdata = derive2 { name="igraphdata"; version="1.0.1"; sha256="19w5npa4b8c054v94xlr7nmhhg2fhq4m8jbds86skp8zvipl4rkl"; depends=[]; }; igraphinshiny = derive2 { name="igraphinshiny"; version="0.1"; sha256="1ww5s4jfihzcx4k35lbhzsf54z720xh7b2p5alzk843m6rx77986"; depends=[igraph shiny]; }; igraphtosonia = derive2 { name="igraphtosonia"; version="1.0"; sha256="0vy9jnpjp68l8s0hi1l57j9p41c543h3iqv16pwl550f38zqp8j6"; depends=[igraph]; }; - iheatmapr = derive2 { name="iheatmapr"; version="0.4.12"; sha256="0s479j9l35xiss599vablxgvg6i2j9zq9sxphsq4vdk3bafg84bw"; depends=[fastcluster ggdendro htmlwidgets jsonlite knitr magrittr plyr RColorBrewer S4Vectors scales]; }; - ihpdr = derive2 { name="ihpdr"; version="1.1.0"; sha256="0ga90dwnxygz63m894h4aj2lkjqi99qalkgw9ncfqggq5255h6l3"; depends=[dplyr httr lubridate magrittr purrr readxl rlang rvest tidyr xml2]; }; + iheatmapr = derive2 { name="iheatmapr"; version="0.5.0"; sha256="0s2lc088rq2siy2wzmg1y6nss68rs33mf7w2izqqmg6kbx6d7y9h"; depends=[fastcluster ggdendro htmlwidgets jsonlite knitr magrittr RColorBrewer scales]; }; + ihpdr = derive2 { name="ihpdr"; version="1.2.1"; sha256="1qa9ndb5aqbmlqbl0ivh10ddah2rbhsc6928dml20fjgz7lggdww"; depends=[curl dplyr httr lubridate magrittr purrr readxl rlang rvest tidyr xml2]; }; ihs = derive2 { name="ihs"; version="1.0"; sha256="1c5c9l6kdalympb19nlgz1r9zq17575ivp3zrayb9p6w3fn2i06h"; depends=[maxLik]; }; iilasso = derive2 { name="iilasso"; version="0.0.2"; sha256="043m1n5840459zsknkb54801apb0a2cqfprncmj2wp235rbqj832"; depends=[BH Matrix Rcpp]; }; - ijtiff = derive2 { name="ijtiff"; version="2.0.5"; sha256="1qrp82vvd6gz6a0jjnbhwzfs5qcxv6f97cpl4hpqdq5gmlsahjjv"; depends=[checkmate dplyr filesstrings fs magrittr purrr Rcpp readr rlang stringr withr]; }; + ijtiff = derive2 { name="ijtiff"; version="2.2.0"; sha256="13ahpbrfn1jla7v38wxlmhy617m2dipzipsf5b8f6zyajl5mywjz"; depends=[checkmate cli dplyr filesstrings fs magrittr purrr readr rlang stringr withr zeallot]; }; ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; }; + image_CannyEdges = derive2 { name="image.CannyEdges"; version="0.1.0"; sha256="0c8pvk91xyys6d2i03yy88kylb3jli5jkpq2s069n7p0yl3z7rr1"; depends=[Rcpp]; }; + image_ContourDetector = derive2 { name="image.ContourDetector"; version="0.1.0"; sha256="1z3713paqw86yq45sq1b4gi3nq3y21wcg3pxh7vsciqs669lpv1q"; depends=[Rcpp sp]; }; + image_CornerDetectionF9 = derive2 { name="image.CornerDetectionF9"; version="0.1.0"; sha256="04qy2yvgjmgb8r3piw6v5g97abljqv1nw7vn2wvn1npkq9lzj94x"; depends=[Rcpp]; }; + image_CornerDetectionHarris = derive2 { name="image.CornerDetectionHarris"; version="0.1.1"; sha256="150qz9wfpa33914x1am2ifzm0k2bdkmgk1qypvgxy958ginlaxsg"; depends=[Rcpp]; }; + image_LineSegmentDetector = derive2 { name="image.LineSegmentDetector"; version="0.1.0"; sha256="1mx6vkmm9miwqdd5vil44if0dikzn5cy3kxvb3vp0kwfm8k36ib5"; depends=[Rcpp sp]; }; + image_Otsu = derive2 { name="image.Otsu"; version="0.1"; sha256="0van4w7f3rnd2p5fsfjm7pq1j7ky90z9j0sir1mszjxjkcj6s9rz"; depends=[Rcpp]; }; + image_binarization = derive2 { name="image.binarization"; version="0.1.1"; sha256="1dajmffxali1kj54lfvapgb0vv5bbxxy7wxdsr4p5dv29gjwbl7i"; depends=[magick Rcpp]; }; + image_dlib = derive2 { name="image.dlib"; version="0.1.0"; sha256="118zwalpxcnn2fgjv8xsp763yvbqcyv81p6fblxizlnimyrjva71"; depends=[Rcpp]; }; + image_libfacedetection = derive2 { name="image.libfacedetection"; version="0.1"; sha256="0mr7zrqd73mhvs918615lwsf2bgg63x3wh16wdpwhb2zd7ybm87a"; depends=[Rcpp]; }; imageData = derive2 { name="imageData"; version="0.1-60"; sha256="1ry4l45az9az8wk1k16jxbszxwh0m9s3g838w7dad0midr2hs8qr"; depends=[dae GGally ggplot2 Hmisc RColorBrewer readxl reshape]; }; imagefluency = derive2 { name="imagefluency"; version="0.2.3"; sha256="0f4kizxc86q6pgx5dbp14y6866b1ldyf7zgpfikd2iqhvxbs7qwa"; depends=[magick OpenImageR pracma R_utils readbitmap]; }; imagefx = derive2 { name="imagefx"; version="0.4.1"; sha256="1mxd33y8zbq8kig6m6xihb5w8wrjppgmpyjspvaxjwk7si9a09k1"; depends=[moments signal]; }; - imager = derive2 { name="imager"; version="0.42.1"; sha256="1d7a49lcna77wyfjf5q1b89jck3p3vnysnkgz4drb0qkpy6hz76b"; depends=[downloader igraph jpeg magrittr png purrr Rcpp readbitmap stringr]; }; + imager = derive2 { name="imager"; version="0.42.3"; sha256="1wxvbv803222gjrf1ys6a349xlnmmdw3kqgi93piq9gq7lahihvg"; depends=[downloader igraph jpeg magrittr png purrr Rcpp readbitmap stringr]; }; imagerExtra = derive2 { name="imagerExtra"; version="1.3.2"; sha256="1f6mxfn7am4ph9acbbx53r4bk4vsm73p7arh8rvrsic9pgma3gqf"; depends=[fftwtools imager magrittr Rcpp]; }; imageviewer = derive2 { name="imageviewer"; version="0.1.0"; sha256="1rsrwy5v0gnsmbay1zqijhvll2l1bs844m52w65588j9nlx4fci9"; depends=[htmlwidgets]; }; imagine = derive2 { name="imagine"; version="1.5.3"; sha256="1ss0gm769s8cmma3hnah15vmc2c5wxn0l3s4vas7jbvkwi62am6h"; depends=[Rcpp]; }; imbalance = derive2 { name="imbalance"; version="1.0.2.1"; sha256="14f7p3x8818b1asfynp3w4sxdacsd14dzs7r166s1jdadwwfwi1s"; depends=[bnlearn C50 FNN ggplot2 KernelKnn mvtnorm Rcpp RcppArmadillo smotefamily]; }; imdbapi = derive2 { name="imdbapi"; version="0.1.0"; sha256="11v7c0s7qqf02b186md5lhgkgmywkn8lmmanlz3gfcxca26g047y"; depends=[dplyr httr stringr]; }; - imfr = derive2 { name="imfr"; version="0.1.7"; sha256="1ch05d37gp0niml80k2apab1942aa05r77s52vgh2pfcx9kklv20"; depends=[dplyr httr jsonlite]; }; + imfr = derive2 { name="imfr"; version="0.1.8"; sha256="1kdchi0lzr9qgmz3d1f5rcr9cgz19m2k5bchbyknx7055d09yh1q"; depends=[dplyr httr jsonlite]; }; imgpalr = derive2 { name="imgpalr"; version="0.3.0"; sha256="1kb1ggrlkrh086nwq47sf2y20r7ydk4ww2j3gq0s4iz00aa34pxg"; depends=[downloader dplyr farver jpeg magrittr tibble]; }; imgrec = derive2 { name="imgrec"; version="0.1.0"; sha256="1v4q2hxil7f0jnj4nql44d9dssh8kz1mnj8ah5slndnn1fbymy8f"; depends=[base64enc dplyr httr jsonlite knitr rlang]; }; imguR = derive2 { name="imguR"; version="1.0.3"; sha256="14f7ghgc8rbrpqb21rinfbrj1wh80i6ii0awwi814152v5qzj4b3"; depends=[httr jpeg png]; }; iml = derive2 { name="iml"; version="0.10.0"; sha256="0xm3q42qahq798ilgg050df0mahhbdfd3fx3i7cpx606h38si0x7"; depends=[checkmate data_table Formula future future_apply ggplot2 gridExtra Metrics prediction R6]; }; + immcp = derive2 { name="immcp"; version="0.9.1"; sha256="0pvb62ac1c48cklgcv10f6x986a14x8mz3gpsnfg1di21jk1xbcc"; depends=[Boruta clusterProfiler corrr ggplot2 GSEABase GSVA igraph magrittr Matrix pbapply proxyC reshape2 RobustRankAggreg visNetwork]; }; immer = derive2 { name="immer"; version="1.1-35"; sha256="1nmf9wxxyq3p8b5kikpsr8b0v4s84zjpahg1rxvcrhc8blg26hjq"; depends=[CDM coda MASS psychotools Rcpp RcppArmadillo sirt TAM]; }; + immunarch = derive2 { name="immunarch"; version="0.6.5"; sha256="0vy1m4333k4v24qgcb0ra154hf35mp1f8m10hqnmy2qk00ksd01c"; depends=[airr circlize data_table dbplyr dplyr dtplyr factoextra fpc ggalluvial ggplot2 ggpubr ggrepel ggseqlogo magrittr MASS patchwork pheatmap plyr Rcpp readr readxl reshape2 rlang Rtsne scales shiny shinythemes stringr tibble UpSetR]; }; immuneSIM = derive2 { name="immuneSIM"; version="0.8.7"; sha256="0brj12xnkzmn3n91vb39fq3q68wmzmwx9l38dl38yypp0l8pknjl"; depends=[Biostrings data_table ggplot2 ggthemes igraph Metrics plyr poweRlaw RColorBrewer repmis reshape2 stringdist stringr]; }; - imp4p = derive2 { name="imp4p"; version="0.9"; sha256="1z8q3h8smlnn3i7b0hpc360607ingqz4hblm93bmljri2k1amcvw"; depends=[Iso missForest missMDA norm Rcpp truncnorm]; }; + imp4p = derive2 { name="imp4p"; version="1.0"; sha256="1cny84gml1vca1l2jfcjr6aq3mz8a82wbgj5m6234gvwrf6bq7h9"; depends=[Iso missForest missMDA norm Rcpp truncnorm]; }; impactflu = derive2 { name="impactflu"; version="0.1.0"; sha256="0wpaq2q61g6hl9fffs5cjbzdz1qc8dxsbknfs0iarwkn08460bn5"; depends=[dplyr glue lubridate magrittr Rcpp rlang tibble]; }; impimp = derive2 { name="impimp"; version="0.3.1"; sha256="0xkxph4f1rcpkryx9v339bfbsnq3xwdj1flb4j2dgh99apj126sq"; depends=[]; }; - implicitMeasures = derive2 { name="implicitMeasures"; version="0.1.2"; sha256="0fss5rws8m53p3a26s2gb8bvg3ddiddnp25qj8jspa8f0iyzj48i"; depends=[ggplot2 stringr tidyr xtable]; }; - implied = derive2 { name="implied"; version="0.3.0"; sha256="08hjbw6fa9k71pfkbniwzbysnisl93bx3b7ik8dny029agp10nfx"; depends=[]; }; + implicitMeasures = derive2 { name="implicitMeasures"; version="0.2.0"; sha256="0w0dwnzfhw5v5j7q3zpfsca4ydmq7b9fzspvyf9sibyh587isb9c"; depends=[ggplot2 stringr tidyr xtable]; }; + implied = derive2 { name="implied"; version="0.3.1"; sha256="11mrvpsh9qc5a5s5mpbsksri6vx36ij1gvpli6lyz6dkg48a9kdn"; depends=[]; }; implyr = derive2 { name="implyr"; version="0.3.0"; sha256="1i0m95azyi46wnh59dcs52l78i1yqy677rlr4b6c0r945m67advn"; depends=[assertthat DBI dbplyr dplyr rlang tidyselect]; }; r_import = derive2 { name="r_import"; version="1.1.0"; sha256="0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji"; depends=[]; }; importar = derive2 { name="importar"; version="0.1.1"; sha256="0xv445fmjhsbdlsq03k2rlycnggn3rcyq5a49zrg4jvjamzr0rgr"; depends=[]; }; - importinegi = derive2 { name="importinegi"; version="1.1.1"; sha256="0lhlrmij4ggwpjcyimyhjywp18i0rr2f9fkvs4nf9pj1xb87rd3l"; depends=[data_table dplyr foreign haven rgdal]; }; + importinegi = derive2 { name="importinegi"; version="1.1.2"; sha256="11mr3kw7y015w6892cz73qm77rhcsm86b4hlb34aqcbcqqqxlxrv"; depends=[data_table dplyr foreign haven rgdal]; }; impressionist_colors = derive2 { name="impressionist.colors"; version="1.0"; sha256="03z5w7y7vbvlnn30r9y3ip93h364f87nhwdb9hcki26csiq2bnlv"; depends=[]; }; imptree = derive2 { name="imptree"; version="0.5.1"; sha256="0f087000092ydnpj3ch4mbip8wp32scn8xw4vlkq5lf6130gfs1b"; depends=[Rcpp]; }; - imputeFin = derive2 { name="imputeFin"; version="0.1.0"; sha256="1k61q4cd3j7rj0d35y3gyahjz4ac970m6mifc9pzxryi3w5373c4"; depends=[MASS zoo]; }; + imputeFin = derive2 { name="imputeFin"; version="0.1.1"; sha256="0q1vhnwsds3j4s0r2drqm7xrnwqzmr9fnxpfafwk6lj9jrlp98fx"; depends=[MASS zoo]; }; imputeLCMD = derive2 { name="imputeLCMD"; version="2.0"; sha256="10v3iv1iw6mnss6ry836crq9zdgid2y1h3pvigzjsrmnp5n89mfz"; depends=[impute norm pcaMethods tmvtnorm]; }; imputeMDR = derive2 { name="imputeMDR"; version="1.1.2"; sha256="0ds5a4wav9vb9z5nji8hv5l76310rd970xf702fd0ckx1sh6rgd7"; depends=[]; }; imputeMissings = derive2 { name="imputeMissings"; version="0.0.3"; sha256="1dfhi235j1qz2mv89j92b903j5mdwlzisiyvvi9mmiacdj5ln89z"; depends=[randomForest]; }; imputeMulti = derive2 { name="imputeMulti"; version="0.6.4"; sha256="0ngjbj8pl5mwprrgy234a5p9dhf615z7ymfv8184hby1z6ib3mgl"; depends=[DBI gtools Rcpp RSQLite]; }; imputePSF = derive2 { name="imputePSF"; version="0.1.0"; sha256="0xfd2mybg0cbi3n35j28s4xq4iwr5rq4mqwgdqml7l2rlzidcwc8"; depends=[PSF]; }; imputeR = derive2 { name="imputeR"; version="2.2"; sha256="0jfyl6k285x4lc58q13fhi004l4yaqas0d4g08rx78ml7p6l1r48"; depends=[reshape2]; }; - imputeTS = derive2 { name="imputeTS"; version="3.0"; sha256="0dr6mb2rzfkrm63j4mygf5kji12blycwl6bslbsb5fz64q5xc6dn"; depends=[forecast magrittr Rcpp stinepack]; }; + imputeTS = derive2 { name="imputeTS"; version="3.1"; sha256="09drjpmnmszzk20y8vnifxm0lm72zwp48vmqdc3490p5cncnm3zs"; depends=[forecast ggplot2 ggtext magrittr Rcpp stinepack]; }; imputeTestbench = derive2 { name="imputeTestbench"; version="3.0.3"; sha256="0yc1l3r7g7x2pgyli6j08ikvsbvr24kijnn7pdj54blw7c0pdmm2"; depends=[dplyr forecast ggplot2 imputeTS reshape2 tidyr zoo]; }; imputeYn = derive2 { name="imputeYn"; version="1.3"; sha256="1b21w1aa5f7yiq8k0wa86wvbg4ij7f6ldwn6asfqwb0b90rvsgvs"; depends=[boot emplik mvtnorm quadprog survival]; }; imsig = derive2 { name="imsig"; version="1.0.0"; sha256="01ww48x9a189dvr81bangfhchr70l0sg26jdpcxf41nh2fmslfxx"; depends=[ggplot2 gridExtra HiClimR igraph RColorBrewer survival]; }; @@ -9161,7 +9495,7 @@ in with self; { inca = derive2 { name="inca"; version="0.0.4"; sha256="1r3niibd6pja59am8in9gpyvxi2g5bh8bqqhdixzwaj3xzyyipii"; depends=[Matrix Rcpp RcppArmadillo]; }; incadata = derive2 { name="incadata"; version="0.9.1"; sha256="0987zazkp3cxvk88i3yqb70s2i1cg108vc8wyhh2867s3rqdrpgh"; depends=[decoder rvest sweidnumbr xml2]; }; incgraph = derive2 { name="incgraph"; version="1.0.1"; sha256="0zjvxk2krdlm5bcr0m80nxy46f69a1xadfjw5sjw249b28wdclml"; depends=[BH dplyr orca purrr Rcpp testthat tibble]; }; - incidence = derive2 { name="incidence"; version="1.7.1"; sha256="1d76d1pm4g8y0jalc18dcipi1fzwx843gcbrspcbk8nhdkjxlny4"; depends=[aweek ggplot2]; }; + incidence = derive2 { name="incidence"; version="1.7.2"; sha256="02q672fb5wji4wnlk3fjsgz2hy5hx0nn9xq5hlw7aqb24lh4fifm"; depends=[aweek ggplot2]; }; inctools = derive2 { name="inctools"; version="1.0.15"; sha256="0ikldiwgizs2p9vcalk5729dr6krysnyr4ni0ybg9gljw7iafdlf"; depends=[binom cubature doParallel dplyr foreach ggplot2 glm2 magrittr plyr pracma rlang tibble tmvtnorm]; }; indelmiss = derive2 { name="indelmiss"; version="1.0.9"; sha256="0i4qnvc0xb3ngnk8xdscmx7qnicfs7s6czawf6schb1nh2pjpzyq"; depends=[ape numDeriv phangorn Rcpp]; }; indicspecies = derive2 { name="indicspecies"; version="1.7.9"; sha256="1xza0ha42frz5wizf268j49y3201vpsm4kgj0czsw9wygzjl008f"; depends=[permute]; }; @@ -9169,7 +9503,7 @@ in with self; { inegiR = derive2 { name="inegiR"; version="3.0.0"; sha256="1rhkdmpz7mxi7ddyygss5rlh3c8hgxhzdk3fnvnlizc1l55cc6c0"; depends=[jsonlite lubridate plyr tibbletime XML zoo]; }; ineq = derive2 { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; }; ineqJD = derive2 { name="ineqJD"; version="1.0"; sha256="0anv384jwzn5gkc0jqsl81bkmrjd21br99c5q30xd6ncxavj4s57"; depends=[]; }; - infer = derive2 { name="infer"; version="0.5.1"; sha256="0m22bv71hmi3p89p1cx4rjqp7547i4sma8nl12qjvq1d4955lf28"; depends=[dplyr ggplot2 glue lifecycle magrittr purrr rlang tibble]; }; + infer = derive2 { name="infer"; version="0.5.3"; sha256="1q0lnxnv8krv4n9z80sh4b442s89rvnbph5bddy34z83bkncwv2g"; depends=[dplyr ggplot2 glue magrittr purrr rlang tibble]; }; inference = derive2 { name="inference"; version="0.1.0"; sha256="0j92isfkbhk13yx2hd3a5dd7ikcbgjc04zisd1n5kmg6ajw2aj6r"; depends=[sandwich]; }; inferference = derive2 { name="inferference"; version="1.0.0"; sha256="1x6i8ycba9z57m1n143p1j9pmlfrhjhi4iw0fsny8xmcvqrlr85p"; depends=[Formula lme4 numDeriv]; }; inferr = derive2 { name="inferr"; version="0.3.0"; sha256="1z5bfq0gv1h6iw8nwc19ar6f2sgsvgs3ghq52s09wclqk2yy4azz"; depends=[dplyr magrittr purrr Rcpp rlang shiny tibble tidyr]; }; @@ -9178,9 +9512,9 @@ in with self; { inflection = derive2 { name="inflection"; version="1.3.5"; sha256="1xyx2jnvyjn7n1xsg3m2qpl03qrnmlp9b8fa2h77f922fwj1zxgv"; depends=[]; }; influence_ME = derive2 { name="influence.ME"; version="0.9-9"; sha256="0f6d2hvs9qllyfpsp2cgh7w8yjxafclbk47n8av7j9zpp7s5yg9v"; depends=[lattice lme4 Matrix]; }; influence_SEM = derive2 { name="influence.SEM"; version="2.2"; sha256="1cabl6486mlrmk0418s18wii3n6nl1ckv6w9281wdk4fy27y9qk2"; depends=[lavaan]; }; - influenceAUC = derive2 { name="influenceAUC"; version="0.1.1"; sha256="10iflbcx3hrd0f7y0izkpc9xkhn5bi8if8qdqk8151idzwq6g2jp"; depends=[dplyr geigen ggplot2 ggrepel ROCR]; }; + influenceAUC = derive2 { name="influenceAUC"; version="0.1.2"; sha256="0pscwfxs2y780lzd5sxldnnkzzs2lsjdwz71z44kn7884wqmikpm"; depends=[dplyr geigen ggplot2 ggrepel ROCR]; }; influenceR = derive2 { name="influenceR"; version="0.1.0"; sha256="12p9362hkndlnz1rd8j2rykg57kbm6l7ks60by3rd25xg50k5jag"; depends=[igraph Matrix]; }; - influential = derive2 { name="influential"; version="0.1.0"; sha256="057nz5p7m903s78656wvw073w62xw783wf2r14xcdw5sj24c7lcl"; depends=[igraph]; }; + influential = derive2 { name="influential"; version="1.1.2"; sha256="195219khnphz7z15za82l1pdh8c2qbn81jwkrsr2q0pax8xjbc5z"; depends=[coop igraph ranger reshape2]; }; influxdbr = derive2 { name="influxdbr"; version="0.14.2"; sha256="03dzw86mvbc8w38q9skjki1z17vc04k9q8dx7sd3xg6xbr10f9d9"; depends=[dplyr httr jsonlite magrittr purrr rlang tibble tidyr xts zoo]; }; infoDecompuTE = derive2 { name="infoDecompuTE"; version="0.6.2"; sha256="0r1capiv4zr31dsy0sqly9zb00i86zq2ihbgsmb5g4cy0f04xlqz"; depends=[MASS]; }; informR = derive2 { name="informR"; version="1.0-5"; sha256="16pz47wlr1gr8z5hdnrjpczm967khqiqgdfiw15a0bby6qdvni2y"; depends=[abind relevent]; }; @@ -9188,38 +9522,40 @@ in with self; { infra = derive2 { name="infra"; version="0.1.2"; sha256="0jycnnmrrjq37lv67xbvh6p63d6l4vbgf3i1z9y7r75d6asspzn1"; depends=[]; }; infraFDTD_assist = derive2 { name="infraFDTD.assist"; version="0.6"; sha256="04j5nl5vxk79iciz6s9bpiyn319c2dbh7fdahgwira2r30w2fxv9"; depends=[fields]; }; infutil = derive2 { name="infutil"; version="1.0"; sha256="02d0hfbkdqjj0lm1fzwwxy60831kbcjn2m4rfblpib0krkbpz72n"; depends=[ltm]; }; - ingredients = derive2 { name="ingredients"; version="1.2.0"; sha256="1q196y9xzn4wk44fa1bvh0hcbizgm93rwir82nyk31k5pgixk967"; depends=[ggplot2 gridExtra scales]; }; + ingredients = derive2 { name="ingredients"; version="1.3.1"; sha256="0l0dqrm9am6wk8jcf8cdhc6xnrna9cqr5wz6lsnczq2gf6ybhjg1"; depends=[ggplot2 gridExtra scales]; }; ini = derive2 { name="ini"; version="0.3.1"; sha256="04yqij344dwm0xqgara8xia42mlmij3i8711qbb5534w05a1l6bv"; depends=[]; }; injectoR = derive2 { name="injectoR"; version="0.2.4"; sha256="0sa32cspp6y3m04yfmd02kxx55mk7l9jxf4r9pk1a6k3sqnj6fl8"; depends=[]; }; inlabru = derive2 { name="inlabru"; version="2.1.13"; sha256="1khsfhays6xna060f4h0rc7yjsq89xl42d36fy33ixgk0rh9vlnc"; depends=[ggplot2 Matrix rgdal rgeos sp]; }; inline = derive2 { name="inline"; version="0.3.15"; sha256="0s4wssvpan189fijahknxq5s22ww9bzmdlmyhnra748r7khky17z"; depends=[]; }; inlinedocs = derive2 { name="inlinedocs"; version="2019.12.5"; sha256="11d8cnrzgq95w7hn234rcwrr1mmrv63f69807pnzxizxbgnp7wz3"; depends=[]; }; - inlmisc = derive2 { name="inlmisc"; version="0.4.9"; sha256="0yd8bysa5l3ihypckmx4g5zh176s6p4xsyw5pavc6pz8239wj5k2"; depends=[checkmate data_table GA htmltools htmlwidgets igraph knitr leaflet raster rgdal rgeos rmarkdown scales sp tinytex xtable yaml]; }; + inlmisc = derive2 { name="inlmisc"; version="0.5.0"; sha256="061gd6mcabi5ydwzdcl5wiw3nfkzlh00i1vf60x81jgzi6d2rclb"; depends=[checkmate data_table GA htmltools htmlwidgets igraph knitr leaflet raster rgdal rgeos rmarkdown scales sp tinytex xtable yaml]; }; inops = derive2 { name="inops"; version="0.0.1"; sha256="1y402a9r542hpwd1nfdc07mbgnf9alpnykl9di1v8fy0qly8s0an"; depends=[]; }; inpdfr = derive2 { name="inpdfr"; version="0.1.11"; sha256="1wnz73ggc7xcgynvdlvgz26qkfjmxxy0xg8gkf1far5346g4qd9y"; depends=[ca cluster entropart metacom R_devices RColorBrewer SnowballC stringi tm wordcloud]; }; - inplace = derive2 { name="inplace"; version="0.1.0"; sha256="1lmvfjxgficlzxbn953wvfa1n9lys9gqprix6zbqqr4d6vkm0srj"; depends=[Rcpp]; }; + inplace = derive2 { name="inplace"; version="0.1.1"; sha256="0baiwpd92aa2v3h9srqc2ri0b6ys7hqfb5wxax7whrmdad0dy7hf"; depends=[Rcpp]; }; insect = derive2 { name="insect"; version="1.2.0"; sha256="0lbck8jbhymzkhm1iqd2y2xg8a26yjizw7x31b1l1kqc1l0p3kmv"; depends=[ape aphid kmer openssl phylogram RANN seqinr xml2]; }; + insee = derive2 { name="insee"; version="0.8.0"; sha256="09gymkvf8zmbiiyb1f38w5ckajz07050nhq2vim3kyvljkl2yrw4"; depends=[dplyr httr lubridate rlang rsdmx stringr tibble tidyr tidyselect xml2]; }; insideRODE = derive2 { name="insideRODE"; version="2.0"; sha256="1ffndk8761cpkririb3g1qsq9nwmh82lcrpql9i5fksdprvdjzcw"; depends=[deSolve lattice nlme]; }; - insight = derive2 { name="insight"; version="0.8.3"; sha256="0lm5a4r368mq1pwmxjk2xnz25lb9j4v7mdkl1bahk2alklxgb8yj"; depends=[]; }; + insight = derive2 { name="insight"; version="0.9.0"; sha256="1ajc8c5mi3ma5411lmlqp2ihkk5n0h8a1c0r3j07wk33p31c1qvl"; depends=[]; }; insol = derive2 { name="insol"; version="1.2.1"; sha256="1d2vqmbp94ff80mfkmq4a8y12r6ryym8hh1568ip9qbn7snc64v1"; depends=[raster]; }; - inspectdf = derive2 { name="inspectdf"; version="0.0.7"; sha256="03yli2fiyb3kw189aga9hiyxm9f9b2lhpx1cjv9silfgm0xj54lh"; depends=[dplyr ggfittext ggplot2 magrittr progress Rcpp tibble tidyr]; }; + inspectdf = derive2 { name="inspectdf"; version="0.0.8"; sha256="1ixdsxmclcpjn3ipvk9h9k7fdif9835ayhbd24nsaadby5ymmsfh"; depends=[dplyr ggfittext ggplot2 magrittr progress Rcpp tibble tidyr]; }; instaR = derive2 { name="instaR"; version="0.2.4"; sha256="0c4m471ragkpksr0h21cdgnjxcknf01xqz543dahxgzjg9ncjwhg"; depends=[httr jsonlite]; }; - install_load = derive2 { name="install.load"; version="1.2.1"; sha256="148q0rjal5hfcb8ilxzd1bz38mn8vxqrsfg5x4jy48psk00fk3d9"; depends=[]; }; + install_load = derive2 { name="install.load"; version="1.2.3"; sha256="0z4klcpwdlmhwvk41z9q4c4382z8glad27h0gai93zyciy44sdyx"; depends=[assertthat checkmate fastmatch]; }; insuranceData = derive2 { name="insuranceData"; version="1.0"; sha256="0wryh8i1v3bnpbqn6d6dpxr9bwwl6mnh5cb5igz0yanh4m1rx96w"; depends=[]; }; - insurancerating = derive2 { name="insurancerating"; version="0.6.0"; sha256="16032rjs0xhyg60iwbnwmx7kq86aqhfdrz67cj892zb0iii9y131"; depends=[classInt data_table dplyr evtree ggplot2 lubridate magrittr mgcv patchwork stringr tidyr]; }; + insurancerating = derive2 { name="insurancerating"; version="0.6.2"; sha256="165zl1qchd23yq520hipc4ckdihbv0clfnm1jzqis6lla5k2pi56"; depends=[ciTools classInt data_table DHARMa dplyr evtree ggplot2 insight lubridate magrittr mgcv patchwork stringr tidyr]; }; intRegGOF = derive2 { name="intRegGOF"; version="0.85-5"; sha256="0xjq8vdlgqlzrvp752gd4qfrpnpapx7k6xzfsvfril8ngvm9a162"; depends=[]; }; intRvals = derive2 { name="intRvals"; version="1.0.0"; sha256="0391raj5wq6issvzqm8bfnv1ap2hh5nfsqi9r1x5ss37fvcq5fjm"; depends=[lme4 plyr]; }; intamap = derive2 { name="intamap"; version="1.4-9"; sha256="060sghkqsdrxpa340rvjskh2wafdkffa5q8nlbg1msnsmk639lkn"; depends=[automap doParallel evd foreach gstat MASS mvtnorm rgdal sp]; }; intamapInteractive = derive2 { name="intamapInteractive"; version="1.1-12"; sha256="1h8kzinfpp2rwal11xqs9g99rmigs0jlsr5h0qh0zsill73minid"; depends=[automap gstat intamap rgdal sp spatstat spcosa]; }; intccr = derive2 { name="intccr"; version="3.0.2"; sha256="1v2zhyap414w41dgy2jjz3fnrvk0vawf02dvb1nprrid7fqsnf9i"; depends=[alabama doParallel foreach MASS]; }; intcensROC = derive2 { name="intcensROC"; version="0.1.1"; sha256="0qkgp6iw2s772zk2533jsar64f5mqgy4874swgarnfgd4jvkwy2k"; depends=[pracma Rcpp RcppEigen]; }; + intcure = derive2 { name="intcure"; version="2.1"; sha256="13p9z5ar0hn6m4b7rz6qg20blfyk9h9bq55rkj1g736iky6vn7q2"; depends=[cubature mvtnorm survival]; }; intdag = derive2 { name="intdag"; version="1.0.1"; sha256="0mb0a1ccc67clfa75b4hl901zdmx7fxw713c4ybx3i5wc2ldl8ph"; depends=[]; }; intePareto = derive2 { name="intePareto"; version="0.0.1"; sha256="0mynqvmdb39zqx1z2y6bscfjkwf880b7pd149xsdbc6f49hlnfw6"; depends=[apeglm biomaRt DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges rPref Rsamtools]; }; integIRTy = derive2 { name="integIRTy"; version="1.0.6"; sha256="0nyp9nixwyz1n2nydkh64lmd5z4qjcabwa1pyzv69rgw5gx60020"; depends=[abind doParallel foreach ltm MASS mclust]; }; integr = derive2 { name="integr"; version="1.0.0"; sha256="172vj29bdk42ibgwj7dl06wslpg2dccp1i8iscbz1yd0j5kw36sq"; depends=[DiagrammeR DiagrammeRsvg dplyr gtools rsvg]; }; intensity_analysis = derive2 { name="intensity.analysis"; version="0.1.6"; sha256="1ydmn7njqk6i2667zaha8mvfndss4im39czadg1f3z6sndp2lsji"; depends=[diffeR ggplot2 raster reshape2 rgdal]; }; interAdapt = derive2 { name="interAdapt"; version="0.1"; sha256="06ki36l1mrnd9lbm696a6gapr488dz8na4wvl9y1fif9hfv4zk25"; depends=[knitcitations knitr mvtnorm RCurl shiny]; }; - interactionR = derive2 { name="interactionR"; version="0.1.0"; sha256="0iv631ws6y6gc3cyihiw4x90n0r4l8j8gxw2g8l6j8hccg4avsdh"; depends=[car flextable huxtable msm officer]; }; + interactionR = derive2 { name="interactionR"; version="0.1.1"; sha256="1gw1kvv76rrfsq67dyhm5ydpb1y5fxp6jqfcqdw50f4k0m76z55k"; depends=[car flextable msm officer]; }; interactionTest = derive2 { name="interactionTest"; version="1.2"; sha256="0ycr839l07xahakr4r2jvlmd0fcxfm4qi3g8agnyh24c2kwl3ck2"; depends=[]; }; interactions = derive2 { name="interactions"; version="1.1.3"; sha256="11nn3w4qsnh0idf7cwnrclg9h8vdjfl9rbvfk1c4l65pm4f61xrv"; depends=[cli crayon generics ggplot2 jtools rlang tibble]; }; interep = derive2 { name="interep"; version="0.3.1"; sha256="0j5mpbx0h1p7si3n532fpzsq5d2ris77vmvqabz1vdzlv4dzlmk8"; depends=[MASS Rcpp RcppArmadillo]; }; @@ -9236,6 +9572,7 @@ in with self; { interpret = derive2 { name="interpret"; version="0.1.24"; sha256="0nhxxcdw21qi356nxs0abp2fv87izs3667rw774251r9sbpq5vn1"; depends=[]; }; interpretR = derive2 { name="interpretR"; version="0.2.4"; sha256="0nfh3pyr7nn0r41xk0mfb4fs5rjkbh43lbw14x7pdmbgzpgsc22c"; depends=[AUC randomForest]; }; interval = derive2 { name="interval"; version="1.1-0.1"; sha256="1lln9jkli28i4wivwzqrsxvv2n15560f7msjy5gssrm45vxrxms8"; depends=[Icens MLEcens perm survival]; }; + intervalaverage = derive2 { name="intervalaverage"; version="0.8.0"; sha256="07p9r358q3jxm8n7nypxmvpfnh61njivcwaplgzzxrlcbway6fq9"; depends=[data_table Rcpp]; }; intervals = derive2 { name="intervals"; version="0.15.2"; sha256="0mvwfwc03ifb30a3dzbmkv9adwqb8ajxhcw24d8xip8px063plhb"; depends=[]; }; intervcomp = derive2 { name="intervcomp"; version="0.1.2"; sha256="1l6x1fl84li6is3b92b96q3fbv0rpgqy2lvw9cbi2cq8nh9imnyx"; depends=[]; }; interventionalDBN = derive2 { name="interventionalDBN"; version="1.2.2"; sha256="0wpp4bfi22ncvl0vdivniwwvcqgnpifpgxb4g5jbyvr0z735cd9w"; depends=[]; }; @@ -9244,7 +9581,7 @@ in with self; { intoo = derive2 { name="intoo"; version="0.4.0"; sha256="0s4jii34cgvyi573z569l1827yf90vj4ih9krsgvpbvk7lfdbagg"; depends=[]; }; intrinsicDimension = derive2 { name="intrinsicDimension"; version="1.2.0"; sha256="0cka20ifxx9njnvp18bzhrvmh3cwjnxkc0a23qzi43dahc51ijbc"; depends=[yaImpute]; }; introgress = derive2 { name="introgress"; version="1.2.3"; sha256="1j527gf7pmfy5365p2j2jbxq0fb0xh2992hj4d7dxapn4psgmvsk"; depends=[genetics nnet RColorBrewer]; }; - intrval = derive2 { name="intrval"; version="0.1-1"; sha256="1p66cjpn43xib7rrnyv3jqr6bb49d3dxf888p8hxnr7kx9wfalkn"; depends=[]; }; + intrval = derive2 { name="intrval"; version="0.1-2"; sha256="1fbgl2r359aml6cfz8x7h0381kxfx1dy0hr0c7012vr66f6c2lhi"; depends=[]; }; intsurv = derive2 { name="intsurv"; version="0.2.1"; sha256="1vkqxd08g2mbci3g543d1cil890ia39bp6yv86l5jdh5ry9174pc"; depends=[Rcpp RcppArmadillo]; }; intsurvbin = derive2 { name="intsurvbin"; version="0.0.4"; sha256="119zjn1agl2j4fj4yg1pq1sqskzw93xfzppmc5n1x8llmfbxkqsj"; depends=[mgcv MHadaptive msm mvtnorm tmvtnorm]; }; intsvy = derive2 { name="intsvy"; version="2.4"; sha256="19anm90rqhvdv0fsr2hbzkwsr3zc7pimq4gcg2mgj06gxqbwhym7"; depends=[foreign ggplot2 Hmisc memisc plyr reshape]; }; @@ -9253,34 +9590,35 @@ in with self; { invGauss = derive2 { name="invGauss"; version="1.1"; sha256="0l93pk2sh74dd6a6f3970nval5p29sz47ynzqnphx0wl3yfmmg9c"; depends=[optimx survival]; }; invLT = derive2 { name="invLT"; version="0.2.1"; sha256="0dcr2cclgzkvsw1lysmjrkwgahas96rjc328yc7a1a56pf62kw2v"; depends=[]; }; invctr = derive2 { name="invctr"; version="0.1.0"; sha256="0jrbr53kvwrf800z18vz9df9bk7swpd4avnyf59ggz2bc0z2ijwk"; depends=[plyr rlang]; }; - inventorize = derive2 { name="inventorize"; version="1.0.2"; sha256="14pdmqp4h5041gn18wl5imsj4nha6n0wxnjmfbiry3n1lz4id584"; depends=[dplyr ggplot2 magrittr plyr]; }; + inventorize = derive2 { name="inventorize"; version="1.0.6"; sha256="01rwqqljmlk5bwnvlx0qy6n67q2swjcxp90fp2wipyvl1f46h3m1"; depends=[dplyr ggplot2 magrittr plotly plyr tidyr]; }; inverseRegex = derive2 { name="inverseRegex"; version="0.1.0"; sha256="1wk3ac2rfy0m8442sa2m75s6l3wadx4d4cwas6c8n2xqkrphci87"; depends=[]; }; investr = derive2 { name="investr"; version="1.4.0"; sha256="0l47bfwxssfr3maprkpwnmgxnxccl3ch4grc7f968iiqk83mcxw9"; depends=[nlme]; }; invgamma = derive2 { name="invgamma"; version="1.1"; sha256="12ga2y4wc9bc5zz6vimvxwgjpsx3ys3209nq63gscbw559ydxa5a"; depends=[]; }; io = derive2 { name="io"; version="0.3.2"; sha256="1cyl8wvbngdrdkkckng1bs699rjp737j99kbd8r155fjj0370nx4"; depends=[filenamer stringr]; }; - ioanalysis = derive2 { name="ioanalysis"; version="0.2.2"; sha256="1z7awlbll7lxarl18x5rmlxr36kp0yvx0blvhn2q7fr7zyjffgk4"; depends=[ggplot2 plot3D]; }; - ioncopy = derive2 { name="ioncopy"; version="2.1.1"; sha256="1lkav3xvh2qazfmcxwisrjy8wzf639a4md71499jj5rmy650crys"; depends=[shiny]; }; + ioanalysis = derive2 { name="ioanalysis"; version="0.3.3"; sha256="11nrvqnwj51cfc1gxf6wsmiwmqrcd4h1q6ya9qqvkrf3fwfg7mi7"; depends=[ggplot2 lpSolve plot3D]; }; + ioncopy = derive2 { name="ioncopy"; version="2.2.2"; sha256="133ay7xvdigs4q9yx5bcwdgsgrgzk2n6xn412dkq3bg95pp1angr"; depends=[shiny zip]; }; ionflows = derive2 { name="ionflows"; version="1.1"; sha256="1k9yz82hbjwljyg4cmi675ppykrc2yq9md8x1hhkfxmp070whcxl"; depends=[Biostrings]; }; ionr = derive2 { name="ionr"; version="0.3.0"; sha256="18rv5n5gihb6pz36s45yj17sdjsbj4485k4lnggdjj1gbbjkz2ni"; depends=[gplots psych]; }; iopsych = derive2 { name="iopsych"; version="0.90.1"; sha256="0adxwxnb1zdlld3icdggx7cq6cp8z4h1jf105485w322a8c6s9ik"; depends=[mco mvtnorm]; }; iosmooth = derive2 { name="iosmooth"; version="0.94"; sha256="06xgzhjgb6pznjzfli193q7kn8sh5jmqsssgymwj98bw7iwn4q3z"; depends=[]; }; - iotables = derive2 { name="iotables"; version="0.4.2"; sha256="1ds6j8x965fc2j11r507ljqwcaam0zz5q2vkhq9gkl53fjfgajlk"; depends=[dplyr eurostat forcats kableExtra knitr lubridate magrittr plyr purrr readxl tibble tidyr]; }; + iotables = derive2 { name="iotables"; version="0.4.3"; sha256="1dmp7bwrwz7l33vnfmqqp5mfzikp3gif3rr8gq2fgnzmlw05wwc3"; depends=[dplyr eurostat forcats kableExtra knitr lubridate magrittr plyr purrr readxl tibble tidyr tidyselect]; }; iotools = derive2 { name="iotools"; version="0.3-1"; sha256="0x24s38shvgqvxpx57qjf86g6f9p9y201yymdl61n5yw439pg88f"; depends=[]; }; ip2location = derive2 { name="ip2location"; version="8.0.0"; sha256="1rhy3jlcl4hcynhjgy3gjx9g9kyn30gq1jwfpll23jixvmrx64by"; depends=[jsonlite reticulate stringr]; }; ipADMIXTURE = derive2 { name="ipADMIXTURE"; version="0.1.0"; sha256="1fl7nyxg7gakjdggdc311wf037zaxwpqsw3ax7liq1pvw6flb9h7"; depends=[ape treemap]; }; - ipaddress = derive2 { name="ipaddress"; version="0.2.0"; sha256="0i9l6lflapc890cb4vvyhgr69lc64z2ci7yxv5qgafpk8wq4fr03"; depends=[AsioHeaders blob Rcpp rlang vctrs]; }; + ipa = derive2 { name="ipa"; version="0.1.0"; sha256="029vz7pb37vnqm7x6h53p0y7z0nx2s36yklyfn9sz21gknsi983j"; depends=[stringi]; }; + ipaddress = derive2 { name="ipaddress"; version="0.4.0"; sha256="105z02lmlvlf9rxb1ki0izdg687imjzs4wfz8v5vbqb1dp66mzss"; depends=[AsioHeaders BH blob Rcpp rlang vctrs]; }; ipc = derive2 { name="ipc"; version="0.1.3"; sha256="10h54j83l7khk1lkpdwn6hwaz31i3v6svg4q1lxzvr2aqdsj7hy0"; depends=[R6 shiny txtq]; }; ipcwswitch = derive2 { name="ipcwswitch"; version="1.0.3"; sha256="1pqlfkglgsahzsw7z9wsx7k0i9n0kx77g9p1j7i9dz7j74s6g09r"; depends=[survival]; }; ipdmeta = derive2 { name="ipdmeta"; version="2.4"; sha256="0k9wqpmrvqdh73brmdzv86a2dbyddjyyyqzqgp1vqb3k48k009s2"; depends=[nlme]; }; - ipdw = derive2 { name="ipdw"; version="0.2-8"; sha256="0a277r3v9b5as6sdmzqnx8a7iqhbb700iwy1xsl9d6hmrn16mi3n"; depends=[gdistance raster rgeos sp]; }; - ipeadatar = derive2 { name="ipeadatar"; version="0.1.0"; sha256="1qg67xmp9x5yv1gm0k6czycg89rpfa8cscrihmqibhscp5dansnj"; depends=[curl dplyr jsonlite lubridate magrittr purrr sjlabelled]; }; + ipdw = derive2 { name="ipdw"; version="0.2-9"; sha256="1vjq5wxfmx1vfclrj68mf3w0lmsxrppin1kph38s2qzcg0y74ghg"; depends=[gdistance raster rgeos sp]; }; + ipeadatar = derive2 { name="ipeadatar"; version="0.1.1"; sha256="04jb7fas5h3i2gryfyxaxnzc3w16p2jna37didnbhvji9vdjd0cr"; depends=[curl dplyr jsonlite lubridate magrittr purrr sjlabelled stringr]; }; ipflasso = derive2 { name="ipflasso"; version="1.1"; sha256="0gf1yj35vr92qi59hffcf4hzrh2b439kfd6m745wgpxq6wic1hs3"; depends=[glmnet survival]; }; ipfp = derive2 { name="ipfp"; version="1.0.1"; sha256="12aklhf9p70r9b2wi0qgbl835b4lil805c31n1ka4kdix4b4cpr4"; depends=[]; }; ipfr = derive2 { name="ipfr"; version="1.0.2"; sha256="0q44zw5g76qfqrqv6w2a8p905n4ljxab9jmyqk6fv9vs8j2kyivg"; depends=[dplyr ggplot2 magrittr mlr tidyr]; }; ipft = derive2 { name="ipft"; version="0.7.2"; sha256="0jifmkwac5yfl110200ljm3pas3321j068af9xqzqs0av20m8hps"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; ipify = derive2 { name="ipify"; version="0.2.0"; sha256="05mi8i839iadpz4apkxpxx86zphkgv748mwvdgjxnz82c7s10q9k"; depends=[httr]; }; iplots = derive2 { name="iplots"; version="1.1-7.1"; sha256="1bz8n9cnx6zy3wsr49h55r0l5ikfl0xjg4r76fi4giid2a3ba4lf"; depends=[png rJava]; }; - ipmisc = derive2 { name="ipmisc"; version="2.0.0"; sha256="0yjbxqi89nv7ksvxihfpbm4fn22y7jgj5ngpn5gd7rmg9bq68g0d"; depends=[crayon dplyr forcats magrittr rlang rstudioapi tibble tidyr zeallot]; }; + ipmisc = derive2 { name="ipmisc"; version="3.1.0"; sha256="10a1qyjv1zzjhjirycq4y3zxp78dki1gafbh0zpjkw4ynfbzxgz2"; depends=[crayon dplyr magrittr rlang rstudioapi tibble tidyr zeallot]; }; ipptoolbox = derive2 { name="ipptoolbox"; version="1.2"; sha256="0scbny4crgr23qcp0vgsxhwmj5g5q5c1c4mb5mmb5njyvc34s01l"; depends=[AlgDesign copula evd kolmim triangle]; }; ipr = derive2 { name="ipr"; version="0.1.0"; sha256="1db06r784c6jga0anp6p5b3k47yfhr84nzxyjn52pc9zkg3yifjm"; depends=[]; }; ipred = derive2 { name="ipred"; version="0.9-9"; sha256="0vs1hqfx7yd0xdbmfsf2gim7spkni0845cj6gswn0nhdfdq7ma0d"; depends=[class MASS nnet prodlim rpart survival]; }; @@ -9288,11 +9626,11 @@ in with self; { ips = derive2 { name="ips"; version="0.0.11"; sha256="02jxanfhsjrabj33nwjv71vdc87hiyzikyqrfdj9ix6dky6lm199"; depends=[ape phangorn plyr seqinr XML]; }; iptmnetr = derive2 { name="iptmnetr"; version="0.1.8"; sha256="040ym8560x0yzn9m0pb3awhcpjmsaj66vlqhmgha6mzd140wpqra"; depends=[httr jsonlite]; }; iptools = derive2 { name="iptools"; version="0.6.1"; sha256="143gawwp3aja5vycl43n6x5hzg3yvagi8x10v9y92hkif9v075qq"; depends=[AsioHeaders BH Rcpp readr stringi triebeard]; }; - ipumsr = derive2 { name="ipumsr"; version="0.4.2"; sha256="1y1s1grmfkaax04i9ig57lv1l64hcwdn420kv1w51f3jh28hbdgg"; depends=[cli crayon dplyr haven hipread pillar purrr R6 raster Rcpp readr rlang tibble tidyselect xml2 zeallot]; }; + ipumsr = derive2 { name="ipumsr"; version="0.4.5"; sha256="1fkiy2xahyigll39jab9kh05wckx66f364rgf27cjaa5wzdmn12h"; depends=[dplyr haven hipread purrr R6 raster readr rlang tibble tidyselect xml2 zeallot]; }; ipw = derive2 { name="ipw"; version="1.0-11"; sha256="11a34j6lp329ran2r9kxn8184kfmibkdig74lsy6lj4w4w0d71cm"; depends=[geepack MASS nnet survival]; }; ipwCoxCSV = derive2 { name="ipwCoxCSV"; version="1.0"; sha256="0avnvf4pnpxnik3iwwglpwkc8h0vsx9v6fxldkbvq7l9bphdbba1"; depends=[survival]; }; ipwErrorY = derive2 { name="ipwErrorY"; version="2.1"; sha256="14p22mwc120kdlf6r1hfx4kp7nqrz2nl2vpvy45j8rbrc571b6ka"; depends=[nleqslv]; }; - iq = derive2 { name="iq"; version="1.3"; sha256="1bs5gmj0vc396pc6ybmfq2wmv4hfn6lbiyqzdsr4zq01r4y4iwgs"; depends=[]; }; + iq = derive2 { name="iq"; version="1.9"; sha256="1kwf10b01xx8wrl9xxhnw9zdp1p3x9d3kfn82m74kvhnnhc720w3"; depends=[]; }; iqLearn = derive2 { name="iqLearn"; version="1.5"; sha256="1zn43zvx0mjzh96bm73scacmladamy8jmhxim7hcfq39cfhiw3c8"; depends=[]; }; irace = derive2 { name="irace"; version="3.4.1"; sha256="1dhlspv1gqg7cm7j95zhl0k2zr0s159krjmxm07k5fp68ax95sky"; depends=[R6]; }; ircor = derive2 { name="ircor"; version="1.0"; sha256="07apa4l4ib11xw25d44b403s3la29sqlid13q41hjrlfxafm91ld"; depends=[]; }; @@ -9306,7 +9644,7 @@ in with self; { irtDemo = derive2 { name="irtDemo"; version="0.1.4"; sha256="0rpwryybnj7b4bxn0mn1m496y85s2fpqdd78lmdl6jg1ck4j4pb3"; depends=[fGarch shiny]; }; irtProb = derive2 { name="irtProb"; version="1.2"; sha256="12wnvbzkh0mx9i3iyh1v2n2f2wjsjj7ad3dgv9xj949x4nbz16j0"; depends=[lattice moments]; }; irtoys = derive2 { name="irtoys"; version="0.2.1"; sha256="0h6iiaxikhbxhbyksbjnb09qdxinlkwr2v9yzs5wslbni14paq5q"; depends=[ltm sm]; }; - irtplay = derive2 { name="irtplay"; version="1.5.0"; sha256="0jj3ac2vc1wkkwdaw8gw08y6y178n5lm468jymb6xrp1s22j22lm"; depends=[dplyr ggplot2 gridExtra Matrix pbapply purrr reshape2 rlang statmod tidyr]; }; + irtplay = derive2 { name="irtplay"; version="1.6.1"; sha256="0j44czx46whqvp9a61wisxa6sy6qqm9i2fjhvjq3k8l7i4dz9hy3"; depends=[dplyr ggplot2 gridExtra Matrix pbapply purrr reshape2 rlang statmod tidyr]; }; irtrees = derive2 { name="irtrees"; version="0.1.0"; sha256="03jmfyx1ia987zhi74fmmcdz70wnm8c7z5z30rwzd1cs11dijjwv"; depends=[]; }; irtreliability = derive2 { name="irtreliability"; version="0.1-1"; sha256="15qs8bvgrwajj5kfd57rd34l1p2805ilyd7w60ngrqc14d6az9d2"; depends=[fastGHQuad ltm mirt]; }; isa2 = derive2 { name="isa2"; version="0.3.5"; sha256="17vm0906szhrh2k5x694vwcfijbzmd1v3axpszfybc0lgds437cv"; depends=[lattice]; }; @@ -9319,17 +9657,17 @@ in with self; { isni = derive2 { name="isni"; version="1.2"; sha256="1nw7i20fli3sg1g1dl17g8rz5bpx49gcmlyw4nvfyhdxqr38nb0r"; depends=[Formula lme4 matrixcalc mixor mvtnorm nlme nnet]; }; isnullptr = derive2 { name="isnullptr"; version="1.0.1"; sha256="0kwjxq59n3qncdw63vsdvz7v5mzbl5lmckdfgiiw35pzmahnxzh9"; depends=[]; }; isoSurv = derive2 { name="isoSurv"; version="0.1.0"; sha256="00dbrblqdylh2z636hwxr79lk2f8sa15wqcm7m6vd5m2jdhw4xay"; depends=[Iso survival]; }; - isoband = derive2 { name="isoband"; version="0.2.1"; sha256="1ndlnv4g9pbd02y50sx4ffg2ccwqbi7fm2v1lh22wdd8pq33d20q"; depends=[Rcpp testthat]; }; + isoband = derive2 { name="isoband"; version="0.2.2"; sha256="044fg014gb6v6v11gm7ivfipz45iqw9cpahjhaacw6kyahyb66zx"; depends=[testthat]; }; isoboost = derive2 { name="isoboost"; version="1.0.0"; sha256="0arah62y2gyjhrwjyf4hbzlzyvnx3594436pvk8jjcjyfk7bzr6c"; depends=[Iso isotone rpart]; }; - isocat = derive2 { name="isocat"; version="0.2.5"; sha256="15y1pjyf1lcwxybrsr1n7z8w2dx1cpldcshc3fprqgy0zm2d9ij7"; depends=[foreach magrittr plyr raster sp]; }; + isocat = derive2 { name="isocat"; version="0.2.6"; sha256="1d6pi2l1lfi4226890lsfa02v0df1mc8gi214icsbk4fid4jygsx"; depends=[foreach magrittr plyr raster sp]; }; isocir = derive2 { name="isocir"; version="2.0-6"; sha256="0dkxdx2g1c579q97r45shws2gylkwqlvrhmc14ddmzi45xhxlql6"; depends=[circular combinat TSP]; }; isopam = derive2 { name="isopam"; version="0.9-13"; sha256="0y1yy0922kq5jxyc40gz8sk9vlzwfkfg5swmc6lk4007g9mgc8fm"; depends=[cluster vegan]; }; isopat = derive2 { name="isopat"; version="1.0"; sha256="0fznvgycyd35dh7pbq1xhp667gsficlmycn5pcrqcbs89069xr1s"; depends=[]; }; isotone = derive2 { name="isotone"; version="1.1-0"; sha256="0alk0cma5h3yn4w2nqcahprijsm89b0gby9najbngzi5vnxr6nvn"; depends=[nnls]; }; isotonic_pen = derive2 { name="isotonic.pen"; version="1.0"; sha256="1lgw15df08f4dhrjjfr0jqkcvxwad92kflj2px526pcxwkj7cj3i"; depends=[coneproj Matrix]; }; - isotree = derive2 { name="isotree"; version="0.1.8"; sha256="043bxl7qfwwh6pirbk65rjb81bk6xmg5isqf9p3bygjpa910pqfi"; depends=[Rcereal Rcpp]; }; + isotree = derive2 { name="isotree"; version="0.1.18"; sha256="1821hs6xxim1jx2akpvs9vk157zc0iq88i5zw5wka1kip041b8x0"; depends=[Rcereal Rcpp]; }; ispd = derive2 { name="ispd"; version="0.2"; sha256="06h4z342d17rkpr2wwck4sq79kprdq6fgqf10jg8cs1f52q6pq0h"; depends=[ibd]; }; - isqg = derive2 { name="isqg"; version="1.2"; sha256="1g4nwngljx6sp2k29pn2v8zgp2nh61w75bg36ihlq093hiq6w7gd"; depends=[BH R6 Rcpp]; }; + isqg = derive2 { name="isqg"; version="1.3"; sha256="1988bc5n4b5mgxrfl1774vfgaw7rxm9vlaxnkx26phjzhlr1ix9h"; depends=[BH R6 Rcpp Rdpack]; }; istacr = derive2 { name="istacr"; version="0.1.1"; sha256="0mpsy9pc0hi1mpyc3jx2wzpijzrzlla5yxhi6vciwlfibdgi8dhk"; depends=[curl jsonlite]; }; isva = derive2 { name="isva"; version="1.9"; sha256="05qx9q0kg4ma23v4abhihw0vz017nq6hv2jzsiqx4d20ngh1dl4z"; depends=[fastICA JADE qvalue]; }; italy = derive2 { name="italy"; version="0.1.0"; sha256="0is90xp6980ja12jzi3816jq1y90ifcw6cvfmybb7invj6rr1cks"; depends=[]; }; @@ -9343,10 +9681,12 @@ in with self; { itertools = derive2 { name="itertools"; version="0.1-3"; sha256="1ls5biiva10pb1dj3ph4griykb9vam02hkrdmlr5a5wf660hg6xn"; depends=[iterators]; }; itertools2 = derive2 { name="itertools2"; version="0.1.1"; sha256="0yra3x9ddvn5pp3jibm69205zazv81bz0cflw4mdvxpqadaf9f96"; depends=[iterators]; }; its_analysis = derive2 { name="its.analysis"; version="1.4.1"; sha256="0f3wn7d3j6c0hhg2gp439y5m3namlswgdln18xxbvzzr4s8kz0wx"; depends=[boot car forecast ggplot2 plyr]; }; - itsadug = derive2 { name="itsadug"; version="2.3"; sha256="0wzdy82h05264n9cr84w5j98vz24was9hh1y0wdp56ws3dfbav9m"; depends=[mgcv plotfunctions]; }; + itsadug = derive2 { name="itsadug"; version="2.4"; sha256="0759l7hhvj05dp92pz59xwrxjm9s1iwkwrdhs68l0fq57550j70l"; depends=[mgcv plotfunctions]; }; itsmr = derive2 { name="itsmr"; version="1.9"; sha256="0dmijaq6q31irwrjqv5gq1yfbgggwb3m6rwbg4lx1r9l3cqays7i"; depends=[]; }; iva = derive2 { name="iva"; version="0.1.0"; sha256="0dchb263ygilxapwsw2gpl18z12wcjsz8zz5fg7h068hmcysa88g"; depends=[Formula ucminf]; }; ivdesc = derive2 { name="ivdesc"; version="1.0.0"; sha256="134dia4wwg7pazc92ccsb3pmsp9kpszr3j5ziyh0ld53qdmcsmz3"; depends=[knitr purrr rsample]; }; + ivdesign = derive2 { name="ivdesign"; version="0.1.0"; sha256="02v2cnljz3gk7mb8q3p1i54rj6l02r4pirznnrshy092zvrvr26m"; depends=[]; }; + ivdoctr = derive2 { name="ivdoctr"; version="1.0.0"; sha256="18pca08cww4x13j3ks0mr84c3jkigf09s7wrh5y8pc11ypyxbgp1"; depends=[AER coda data_table MASS Rcpp RcppArmadillo rgl sandwich]; }; ivfixed = derive2 { name="ivfixed"; version="1.0"; sha256="0a26zrkvz0ffq4zxdx5vhr1nvsi9c15s6gvc1zy2pddjz31x2xi5"; depends=[Formula]; }; ivmodel = derive2 { name="ivmodel"; version="1.8.1"; sha256="0c0lzjvp9dzj92p65v5lqmr701ksklx06lf6fcylj2w9hczf5klw"; depends=[Formula ggplot2 Matrix reshape2]; }; ivmte = derive2 { name="ivmte"; version="1.2.0"; sha256="19jcydb5n950av2c9j89sakjkq1jbwnarrl0hwmdy573jqh4d8a5"; depends=[Formula]; }; @@ -9362,8 +9702,9 @@ in with self; { jabr = derive2 { name="jabr"; version="0.1.2"; sha256="19hcg2jn7vxmnqwq1828396pgnq53nyw30s19rhy1d7rk5k7dy1p"; depends=[ckanr dplyr glue httr magrittr pillar purrr rappdirs rlang stringr tibble tidyr]; }; jaccard = derive2 { name="jaccard"; version="0.1.0"; sha256="1dmla6qc1k8iw2d7zfjqhf13gqd2lpsrj09yh47ljf994fpab936"; depends=[dplyr magrittr qvalue Rcpp]; }; jack = derive2 { name="jack"; version="1.1.1"; sha256="1mp7cfmh3bzfansb3dyqq347qk6kkf4ndn23pbd78h1xcb54555b"; depends=[DescTools gmp multicool mvp partitions]; }; - jackalope = derive2 { name="jackalope"; version="1.1.0"; sha256="0mhsns4q7q7m3dzwkskmrsz3ppp6xvrc89salg62kqhpcay324al"; depends=[ape R6 Rcpp RcppArmadillo RcppProgress Rhtslib zlibbioc]; }; + jackalope = derive2 { name="jackalope"; version="1.1.1"; sha256="015nkwk1rjz0327gwidyvi6vhl5x8nw87y0pwb3xcvgwbq8rbka2"; depends=[ape R6 Rcpp RcppArmadillo RcppProgress Rhtslib zlibbioc]; }; jackknifeKME = derive2 { name="jackknifeKME"; version="1.2"; sha256="0c5shl6s46kz7a623gccqk2plrrf2g29nwr6vbny6009pq3jvzam"; depends=[imputeYn]; }; + jackstrap = derive2 { name="jackstrap"; version="0.1.0"; sha256="09y9pgb920lnbzlgm6j188q8lw1air83kx383a2f89zz7hhgg7jr"; depends=[Benchmarking doParallel dplyr fBasics foreach ggplot2 plyr reshape rlang scales tidyr]; }; jackstraw = derive2 { name="jackstraw"; version="1.3"; sha256="02qcaf2p0fyni6n2zhd7vp65kniz74di0pf5jzz79jwj15cfd1b0"; depends=[cluster ClusterR corpcor irlba lfa qvalue rsvd]; }; jacpop = derive2 { name="jacpop"; version="0.6"; sha256="0kq6rn33civ2g6i5nwfqvcgmnn5k2dwmw60lkmz4ywm0y4xxlkai"; depends=[]; }; jaggR = derive2 { name="jaggR"; version="0.1.1"; sha256="0qd4kwcc8zcvg2p1njcv7z4y5ssg77zsylph5bcaqdjxq996q7rv"; depends=[formatR glue]; }; @@ -9376,64 +9717,65 @@ in with self; { jcext = derive2 { name="jcext"; version="0.1.1"; sha256="02zppiyq3gy551zi1g00gam1w4y1wgzn5zi9wrcz8yw915dla0ix"; depends=[ggplot2 maps RColorBrewer rworldmap sp stringr]; }; jcolors = derive2 { name="jcolors"; version="0.0.4"; sha256="18dmjcrci0z1xy2kglrarzm0idr9g3nhbbw7f1ijls3i0piqdri6"; depends=[ggplot2 scales]; }; jcp = derive2 { name="jcp"; version="1.0"; sha256="1p3bjn3m7mw8rxcmd79ss23v9sb1ad28qcirj5czpj274glnj26k"; depends=[]; }; - jdx = derive2 { name="jdx"; version="0.1.3"; sha256="0d9m0sbdrlh8jfijn5mrfw8y2bpj5vxm0bcjlcc42ipxj47962l9"; depends=[rJava]; }; + jdx = derive2 { name="jdx"; version="0.1.4"; sha256="0jqf0nkdyv9g4rifzlkls0n64fdcma2yphwl478772jlgfmxm2jb"; depends=[rJava]; }; jeek = derive2 { name="jeek"; version="1.1.1"; sha256="15n0k0i1wwp72g8zqrjmglnckab3p65q3rnpg6d6h8hjcpv82i7g"; depends=[igraph lpSolve pcaPP]; }; jetpack = derive2 { name="jetpack"; version="0.4.3"; sha256="16l4wkrkf4ihhhpwzd62gvz30n8lxyvail70vmcg41gzdyw76hbl"; depends=[crayon desc docopt packrat remotes]; }; jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; }; - jfa = derive2 { name="jfa"; version="0.1.0"; sha256="13fhxzhaq29z1kbaf4y9gb1m3706gvd2wsann9kz2mbpa2p9jk3a"; depends=[]; }; + jfa = derive2 { name="jfa"; version="0.2.0"; sha256="13s55nxs5yq9y034h4cbacbchfa855wcbq67ajiihmy10aj4smlp"; depends=[]; }; jiebaR = derive2 { name="jiebaR"; version="0.11"; sha256="08v64xwr9jp4vh88x7y935khh4cmj8rwsjaxfd2c67n0445qppmd"; depends=[jiebaRD Rcpp]; }; jiebaRD = derive2 { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; jipApprox = derive2 { name="jipApprox"; version="0.1.2"; sha256="09xvcf9sjf5xzrwpzicgln57ldv6kh1algsiq4kc0hnshmfvk56g"; depends=[sampling]; }; jjb = derive2 { name="jjb"; version="0.1.1"; sha256="0y9yvnzg6xngz1fvzl5jm4yb1pg6wrp3id0gysv214wcznf3gna9"; depends=[]; }; jlctree = derive2 { name="jlctree"; version="0.0.1"; sha256="17n39jc7cwv6hiayy7h1859prdwy2j3pz1vhi6jqnzm4wy6p8a9a"; depends=[lme4 rpart survival]; }; - jmcm = derive2 { name="jmcm"; version="0.2.1"; sha256="1giyd0agjz1qpgj7q55maxk7jjmpwc3mrj02ailvwl44rdvhl90v"; depends=[Formula lattice Rcpp RcppArmadillo roptim]; }; + jmcm = derive2 { name="jmcm"; version="0.2.2"; sha256="0bpvvnb7lgf6lfhhshq31yyvyhacfh208b70brm0cdvizj962mvz"; depends=[Formula lattice Rcpp RcppArmadillo roptim]; }; jmdem = derive2 { name="jmdem"; version="1.0.1"; sha256="15zrxgd5fgi4wzp4s963pnwj3vkgxs4ygqrcpncy9b6j2cxrivdc"; depends=[statmod VGAM]; }; jmdl = derive2 { name="jmdl"; version="0.3.0"; sha256="0167yj368lh1n79jwbqs4g2asb67hfmgh97519linmfpx0n6xdpa"; depends=[boot Formula MASS minqa mnormt mvtnorm]; }; jmetrik = derive2 { name="jmetrik"; version="1.1"; sha256="1if1kxx8apgkbxpkjnlj2lpsfnyj2splsg1p3j5vxa7q6wx70f9j"; depends=[]; }; jmotif = derive2 { name="jmotif"; version="1.1.1"; sha256="0b2qllpfgs6q5fwfhxl5b4xdyzbvnja7ld766akf0xxznxvglkrg"; depends=[Rcpp RcppArmadillo]; }; jmuOutlier = derive2 { name="jmuOutlier"; version="2.2"; sha256="1vj9n1hsf780f7l0a22kmi3qm84j4dzjybjkh5zwh6bhwfjnjws3"; depends=[]; }; - jmv = derive2 { name="jmv"; version="1.2.5"; sha256="1hqiclddizvfyvylkak8ia990bfncb9f7gcyljgxmra3djn9mhdn"; depends=[afex BayesFactor car emmeans GGally ggplot2 ggridges GPArotation jmvcore lavaan MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; }; - jmvconnect = derive2 { name="jmvconnect"; version="1.2.8"; sha256="0nfd8zxb9pcvn0180vhwccgy5m00lziq0wh0pwxmnazg1x6n0raw"; depends=[BH evaluate httr jmvcore rappdirs Rcpp]; }; - jmvcore = derive2 { name="jmvcore"; version="1.2.5"; sha256="16ki47sm9ng6jqvyyrgw7s09ag4b28dyaqgn5fck1r7ph2l82lp8"; depends=[base64enc R6 rjson rlang stringi]; }; + jmv = derive2 { name="jmv"; version="1.2.23"; sha256="01c8wln3g9fx0pp4jx2wg6g5qzvs13y8n89rhm6s9yfczq7ljc0p"; depends=[afex BayesFactor car emmeans GGally ggplot2 ggridges GPArotation jmvcore lavaan MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; }; + jmvconnect = derive2 { name="jmvconnect"; version="1.2.18"; sha256="1lc9jb98rfrn3rq65l2zgd72qjgg0f6jmk3nxxwd3birkg8mjf9j"; depends=[BH evaluate httr jmvcore rappdirs Rcpp]; }; + jmvcore = derive2 { name="jmvcore"; version="1.2.23"; sha256="1bms2fbcvnacwg4vahj20iz3b6w22xcjz6zyzdihr5ai0318cjz8"; depends=[base64enc jsonlite R6 rlang stringi]; }; jocre = derive2 { name="jocre"; version="0.3.3"; sha256="1i9n3r16pq6r4sy3fc1rxpil5ws8v2is0xdxafinvwr1hzkv1gz6"; depends=[boot KernSmooth plyr TSP]; }; joinXL = derive2 { name="joinXL"; version="1.0.1"; sha256="1l76bckjz5r1kdsh0s10i0gpca12rkfkp14346fn7avdcw73v23i"; depends=[data_table openxlsx R_utils rChoiceDialogs Rcpp readxl rJava timeDate timeSeries]; }; joineR = derive2 { name="joineR"; version="1.2.5"; sha256="07rsxqvy62w2z48fkgbhfk5b3q9qwkmz11n8j8qkhipqs0h1zwwq"; depends=[lattice MASS nlme statmod survival]; }; joineRML = derive2 { name="joineRML"; version="0.4.4"; sha256="1h4js01zp627b5z5c5daz2a2cz38f3m2a1bijcpmbg17qskv6wp0"; depends=[cobs doParallel foreach generics ggplot2 lme4 MASS Matrix mvtnorm nlme randtoolbox Rcpp RcppArmadillo survival tibble]; }; joineRmeta = derive2 { name="joineRmeta"; version="0.1.2"; sha256="0lkj3rry8kvdcl3dxrkvnql8rl3fsgc4lk5qdifhl41aws2q7ccs"; depends=[ggplot2 gridExtra gtools JM joineR lme4 MASS Matrix meta msm statmod survival]; }; joinet = derive2 { name="joinet"; version="0.0.3"; sha256="01rql7nidmzhrz6agy5kphsln5nl4lpyrqdrfmf5w98zjr8yqkpr"; depends=[cornet glmnet palasso]; }; - joint_Cox = derive2 { name="joint.Cox"; version="3.7"; sha256="1h9cqmly5rrrqvxzkx5fxjaqzks9hpvb2ggaw8b5rn67wbyblrl9"; depends=[survival]; }; + joint_Cox = derive2 { name="joint.Cox"; version="3.8"; sha256="15l37a3ds5mp68812bq60xpacw4k2ndf1fh9ygdjd2dsp4rv6s3q"; depends=[survival]; }; jointDiag = derive2 { name="jointDiag"; version="0.3"; sha256="0pra70jcnkqkzrxz5vc6lzi637rp5w8n9wbv9ix718vnd0j3fm3n"; depends=[]; }; jointMeanCov = derive2 { name="jointMeanCov"; version="0.1.0"; sha256="1cai5g63n11dirn9fldzkqxcnkxc20ndr9ygrr9rk0s1qz8x63pb"; depends=[glasso]; }; jointNmix = derive2 { name="jointNmix"; version="1.0"; sha256="0ibh7hqkpzlfk3bk4d2dd64jhr8cvw563k082vwnljiam7k5nj4b"; depends=[]; }; jointPm = derive2 { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; }; jointseg = derive2 { name="jointseg"; version="1.0.2"; sha256="0zilkxk30w3l9mwikmsgvpy5misjggs98c3bjrjy1pfc4b0is943"; depends=[acnr DNAcopy matrixStats]; }; - jomo = derive2 { name="jomo"; version="2.6-10"; sha256="1k9l4290g350zbw1pjs871q9bxj3j2h1dilxpp06v4wy4n7d8qs0"; depends=[lme4 MASS ordinal survival]; }; + jomo = derive2 { name="jomo"; version="2.7-2"; sha256="1sbcpacxnxbzwa8rr9x2bq7hh0s3sw6yznr90dkp43n6xk5xaqir"; depends=[lme4 MASS ordinal survival]; }; josaplay = derive2 { name="josaplay"; version="0.1.3"; sha256="0q6kjk3mjxwbqvq3zz0ylpi1viznp9pxzngqpjzv5sibv0ndh0lf"; depends=[magrittr utf8]; }; jose = derive2 { name="jose"; version="1.0"; sha256="1yna3x4hi0vn23dqi605nn1y313brwh2wcv527bm3mdbscgsi2jf"; depends=[jsonlite openssl]; }; + journalabbr = derive2 { name="journalabbr"; version="0.2.2"; sha256="0r88cxqd2w1gqc5l5i140sjw56ry554p9n2vjvb3a969dfv510wh"; depends=[dplyr httr purrr rlang shiny stringi stringr tibble usethis]; }; jpeg = derive2 { name="jpeg"; version="0.1-8.1"; sha256="1a8mi70x79a691r40yiw684jkg1mr9n8agkxlcksxcnrdybs9c0x"; depends=[]; }; - jpmesh = derive2 { name="jpmesh"; version="1.2.0"; sha256="0n2il3y9fix0hrva08hk6hdqqqw5y0vwh5m89vqssr4pccyd1syd"; depends=[leaflet magrittr miniUI purrr rlang sf shiny tibble units]; }; - jpndistrict = derive2 { name="jpndistrict"; version="0.3.6"; sha256="0wwkj1m22mwzpagg2plzpwn51sjvnhzhz5q3y8wwza72zhd9sx3h"; depends=[dplyr googlePolylines jpmesh leaflet magrittr miniUI purrr rlang sf shiny tibble tidyr tidyselect]; }; + jpmesh = derive2 { name="jpmesh"; version="1.2.1"; sha256="138ysjc2swz2vph6i0h14l6bnii2zg3sfhms2186wmvl9lhlxca6"; depends=[leaflet magrittr miniUI purrr rlang sf shiny tibble units]; }; + jpndistrict = derive2 { name="jpndistrict"; version="0.3.7"; sha256="0qzjcnq0c4d2hh4qxglkaq2qmnqk790ibmr00j5f9x494q74ccfr"; depends=[curl dplyr googlePolylines jpmesh leaflet magrittr miniUI purrr rlang sf shiny tibble tidyr tidyselect]; }; jqr = derive2 { name="jqr"; version="1.1.0"; sha256="00x5a61bsn2ywzc2haz19f6h0sqhlx7z3k1n9y0729dwm4id89ms"; depends=[lazyeval magrittr]; }; - jquerylib = derive2 { name="jquerylib"; version="0.1"; sha256="0spq9x6fmnw9nnxanwrm17pwsc29mfw7v7v91ypzwb79wkyx3lys"; depends=[htmltools]; }; + jquerylib = derive2 { name="jquerylib"; version="0.1.1"; sha256="1yix68mv2y2gl6vq2da6mhn264zn5cd8mlmqf9kzdvr81pdm0gnp"; depends=[htmltools]; }; jrc = derive2 { name="jrc"; version="0.3.1"; sha256="0vzmmzblwx055jvd90bz6s5iy901kqanbrs64c3wpaxvjigwf87z"; depends=[httpuv jsonlite mime R6 stringi stringr]; }; jrich = derive2 { name="jrich"; version="0.60-35"; sha256="1y486bfqmfg3f22wm0lfk3lh20ljgi8qrgn5jji0f417wh48nf0x"; depends=[ape]; }; jrt = derive2 { name="jrt"; version="1.0.1"; sha256="023i0xqz8mhnjnii92vjw64mjnnlf8jaji99i4c2vxcr7m83jm0r"; depends=[directlabels dplyr ggplot2 ggsci irr mirt psych tidyr]; }; jrvFinance = derive2 { name="jrvFinance"; version="1.4.1"; sha256="1gkivmvc0njm32w7yhbh02h9p212xa3m4cvrwcy7yray8g6phdxp"; depends=[]; }; - js = derive2 { name="js"; version="1.1"; sha256="1xsdr14k4djcd1nqybvfzhviics4igsj8yz3r0j2nqhin2wjynlf"; depends=[V8]; }; + js = derive2 { name="js"; version="1.2"; sha256="0s5rj845255a4fzv4h76gcnnqyl5cg3c03r2ay3f00jxnxvvigcg"; depends=[V8]; }; jsTree = derive2 { name="jsTree"; version="1.0.1"; sha256="0n754illyw29bprll676k9qm5vk5h8qss6gb8lls57kdzj51x2jz"; depends=[data_table htmlwidgets jsonlite]; }; - jskm = derive2 { name="jskm"; version="0.3.8"; sha256="1z420lx4ayn19k8d13p4ii8r035jingli618mpfjl3wk95hzigqf"; depends=[ggplot2 gridExtra plyr scales survey survival]; }; - jsmodule = derive2 { name="jsmodule"; version="1.0.6"; sha256="0qf82yrf3jdhwydwcwiqxlznsn5ayiqigdilyp0xqrrx8s8mkb26"; depends=[data_table devEMF DT epiDisplay geepack GGally ggplot2 haven Hmisc jskm jstable labelled MatchIt maxstat pROC purrr RColorBrewer readr readxl rstudioapi see shiny shinycustomloader shinyWidgets survC1 survey survIDINRI survival tableone timeROC]; }; + jskm = derive2 { name="jskm"; version="0.3.9"; sha256="1v49ibwxdw7kcabqngnsvgjpwh97qdsm1ab8vnr4mzznfyfyngyv"; depends=[ggplot2 gridExtra plyr scales survey survival]; }; + jsmodule = derive2 { name="jsmodule"; version="1.1.0"; sha256="0yhzij4m3n3zwxna9cb9gixnjvpdjmj5dy1yz88jwrcx415vnb5w"; depends=[Cairo data_table devEMF DT epiDisplay geepack GGally ggplot2 haven Hmisc jskm jstable labelled MatchIt maxstat pROC purrr RColorBrewer readr readxl rstudioapi see shiny shinycustomloader shinyWidgets survC1 survey survIDINRI survival tableone timeROC]; }; json64 = derive2 { name="json64"; version="0.1.3"; sha256="19q8qgf4wnd3np12ajy180klpjy0g2csw5micwb4sl7qfzl6wc7j"; depends=[jsonlite]; }; - jsonify = derive2 { name="jsonify"; version="1.1.1"; sha256="14zlg99bryxwhdcydpapjykzqml08ld13mj0kkgijgph2jmzm140"; depends=[rapidjsonr Rcpp]; }; - jsonld = derive2 { name="jsonld"; version="2.1"; sha256="0lp0lp9nbk31dia2nq6xba29ymak9h5wl4zbq4pdqw6qm9iwz6ww"; depends=[curl jsonlite V8]; }; - jsonlite = derive2 { name="jsonlite"; version="1.6.1"; sha256="0xrki07wc17bkmhz0h7jay784j1sls2i9bf1mfpj6yl59791v4kl"; depends=[]; }; + jsonify = derive2 { name="jsonify"; version="1.2.1"; sha256="1kpv6whi6bggi0ij7krzfr0fly6c2j9y54fr5ahgcjp36amr34cj"; depends=[rapidjsonr Rcpp]; }; + jsonld = derive2 { name="jsonld"; version="2.2"; sha256="0bplz2s97wl9yp383jazykh5647iw6kbr1zanqai2s0sxp1xbwn8"; depends=[curl jsonlite V8]; }; + jsonlite = derive2 { name="jsonlite"; version="1.7.0"; sha256="1izfrk5yahsz6s69wanfspn72qdffjglbr5305akj72ig9fnladq"; depends=[]; }; jsonstat = derive2 { name="jsonstat"; version="0.0.2"; sha256="0p0d3snl1971p5ikrkmwqrjjh4fy0b89qk3rnd1dayfb0r80xnnj"; depends=[cli dplyr jsonlite rlang]; }; jsonvalidate = derive2 { name="jsonvalidate"; version="1.1.0"; sha256="1vxklvkva547mzbgi7hll46sfx274c6j4m70algygphz783x3dsx"; depends=[V8]; }; - jsr223 = derive2 { name="jsr223"; version="0.3.3"; sha256="0i00nbsj6b4mx9pgp5rana1kj57hi4lz3lsiniv7baz5avmhp65n"; depends=[curl jdx R6 rJava]; }; - jstable = derive2 { name="jstable"; version="0.9.3"; sha256="0dac786q715syizmncg5ql3w6ahswsp15f8f61m3gxhnimn6f6la"; depends=[car coxme data_table dplyr geepack labelled lme4 magrittr purrr survey survival tableone tibble]; }; - jstor = derive2 { name="jstor"; version="0.3.8"; sha256="034n9x4skn7l0d9c4qfa01vlrqpkvk0dgplmc6cz07qm0hl35xcw"; depends=[cli crayon dplyr furrr magrittr pryr purrr readr rlang stringr tibble tidyr xml2]; }; + jsr223 = derive2 { name="jsr223"; version="0.3.4"; sha256="0rir9v0qhnbl2rgkx1qz2ydj68ba9ccbdzsg6y1acczdhpl03j51"; depends=[curl jdx R6 rJava]; }; + jstable = derive2 { name="jstable"; version="0.9.5"; sha256="0mqq7a9l3jmcvkxfpyxip6i13zkib8ggg0ci8fpwzrxv8lk0n628"; depends=[car coxme data_table dplyr geepack labelled lme4 magrittr purrr survey survival tableone tibble]; }; + jstor = derive2 { name="jstor"; version="0.3.9"; sha256="1rfi02i9j5v2zaz1sganp4rn2bm7yadlq0s4fragyy2jpgs0mnnv"; depends=[cli crayon dplyr furrr magrittr pryr purrr readr rlang stringr tibble tidyr xml2]; }; jtGWAS = derive2 { name="jtGWAS"; version="1.5.1"; sha256="06cgsncgrqslxcc7s0lb3zwa85bhzkmjzz3f04716xpzwa186vxq"; depends=[Rcpp]; }; - jtools = derive2 { name="jtools"; version="2.0.5"; sha256="1mlnspb75cwzqqjlskq21a19jlxljxqj8bnan3w782h1nnp52y6g"; depends=[crayon generics ggplot2 magrittr pander pkgconfig rlang tibble]; }; + jtools = derive2 { name="jtools"; version="2.1.0"; sha256="00ssbpqvzymi264lcig4rv152kffw544d2ccgsyxkhkaq114g0kq"; depends=[crayon generics ggplot2 magrittr pander pkgconfig rlang tibble]; }; jtrans = derive2 { name="jtrans"; version="0.2.1"; sha256="18zggqdjzjhjwmsmdhl6kf35w9rdajpc2nffag4rs6134gn81i3m"; depends=[]; }; jubilee = derive2 { name="jubilee"; version="0.3.3"; sha256="1j2y44pfx9z2k169lh42b4dnfrrnk8jqsjn3wz4l9iscr6r91lx7"; depends=[data_table dplyr readxl xts yaml zoo]; }; junctions = derive2 { name="junctions"; version="1.1"; sha256="1v5jx4mw6x4q3fivsvidd49b8czzbvv5icj39h6jrpmqvrnc8w32"; depends=[Rcpp]; }; @@ -9442,7 +9784,7 @@ in with self; { jvnVaR = derive2 { name="jvnVaR"; version="1.0"; sha256="0zh0dc6wqlrxn5r2yv9vkpyfb8xsbdidkjv9g6qr94fyxlbs4yci"; depends=[]; }; jwutil = derive2 { name="jwutil"; version="1.2.3"; sha256="1cqqbz6n26gmv9jbsf8d2lmzcbyppc8hs882ms56d8fkv3ism4zl"; depends=[Rcpp testthat]; }; kSamples = derive2 { name="kSamples"; version="1.2-9"; sha256="1zs22p68d6320kcylisnk0b5wmpapxkyz15py09czxzw7npw8gms"; depends=[SuppDists]; }; - kStatistics = derive2 { name="kStatistics"; version="1.0"; sha256="1bfxn38lx5yvz65l9kn29wmqjlv80jar3sra6d89rn58l6rszj6n"; depends=[]; }; + kStatistics = derive2 { name="kStatistics"; version="2.0"; sha256="1mmj8mighaxmh0a2naimyv66iffjfhxh0mzbva7y3cx6bwvsfm83"; depends=[]; }; kableExtra = derive2 { name="kableExtra"; version="1.1.0"; sha256="1nicvw06xsf3a1f5c10mih07b76m2v5s5h165vmz0qx6n1a3492i"; depends=[digest glue htmltools knitr magrittr readr rmarkdown rstudioapi rvest scales stringr viridisLite webshot xml2]; }; kader = derive2 { name="kader"; version="0.0.8"; sha256="15f2swgngw5rdjdsh5kd55wm2nivlfs8pv4mdn0b75qihwgg1zkk"; depends=[]; }; kamila = derive2 { name="kamila"; version="0.1.2"; sha256="01rwalv2qigxl3j3jyhrdbxlarwf0xdc8xa6c42sgcl6qpna5vn7"; depends=[abind gtools KernSmooth plyr Rcpp]; }; @@ -9464,20 +9806,18 @@ in with self; { kdetrees = derive2 { name="kdetrees"; version="0.1.5"; sha256="1plf2yp2vl3r5znp5j92l6hx1kgj0pzs7ffqgvz2nap5nf1c6rdg"; depends=[ape distory ggplot2]; }; kdevine = derive2 { name="kdevine"; version="0.4.2"; sha256="15hw27y4rlifz3kyirm7yacca38xqdwr42k21gg67dhmbdplbnz0"; depends=[cctools doParallel foreach kdecopula KernSmooth MASS qrng Rcpp VineCopula]; }; kdist = derive2 { name="kdist"; version="0.2"; sha256="18q7njvsb9sbm412c6ms4b4nxg768z9qahws5rnin06gvb25nfcx"; depends=[]; }; - kdtools = derive2 { name="kdtools"; version="0.4.1"; sha256="0mwlmh6zhl3hl5hzi36wif01d5wp68ghb52q9l43hb2kr2x3i8m3"; depends=[BH Rcpp strider]; }; + kdtools = derive2 { name="kdtools"; version="0.4.2"; sha256="0mgfjk7v7q0rpfmy4ql0xkrlfnw91ps2prdr30ilq6yp3bv88ix5"; depends=[BH Rcpp strider]; }; kedd = derive2 { name="kedd"; version="1.0.3"; sha256="17rwz3yia95xccbxwn43wr6c9b3062094yfahnnnk3wfijyhlxiq"; depends=[]; }; keep = derive2 { name="keep"; version="1.0"; sha256="12803hhrs9v94rv6qaihk1f1ls7lx4cy2pa30v4p1r2z9afx9bjf"; depends=[]; }; kehra = derive2 { name="kehra"; version="0.1"; sha256="1cc0bmbg0dncay50ap7cs2516qngzz3ddaab0jk5r6lwfq87h8qx"; depends=[Hmisc raster reshape2 sp stringr xts zoo]; }; - kelvin = derive2 { name="kelvin"; version="2.0-0"; sha256="04xdgpmysksm79m3vqmb4zra3pq09nv99w4fbdla1lmy7z8pkdrk"; depends=[Bessel]; }; + kelvin = derive2 { name="kelvin"; version="2.0-2"; sha256="0hjycqga3yjrzpgc911nk64nsjrpim4v7219f7iwi1snx0ydhqzf"; depends=[Bessel]; }; kendallRandomWalks = derive2 { name="kendallRandomWalks"; version="0.9.4"; sha256="1mfqblvsn9p6gdcnbypfpzk0xzn6bz1ajbrkz2dap5w35dia3kxa"; depends=[actuar dplyr ggplot2 tibble]; }; kequate = derive2 { name="kequate"; version="1.6.3"; sha256="1ii3wlypm2qqkfxr3z1sdnmgc43h2zzlw6v4h2xxjdlznzxkp3mr"; depends=[equateIRT ltm mirt]; }; - keras = derive2 { name="keras"; version="2.2.5.0"; sha256="14a1mhx95446s8smd4s7adzlmpzx18kqsbgzva4gbya1b48bkw3l"; depends=[generics magrittr R6 reticulate tensorflow tfruns zeallot]; }; + keras = derive2 { name="keras"; version="2.3.0.0"; sha256="0byzg6qpcfj852qlbav8cwhrqvkpkg0zig9brhw2sibljwy8x5ik"; depends=[generics magrittr R6 reticulate tensorflow tfruns zeallot]; }; kerasR = derive2 { name="kerasR"; version="0.6.1"; sha256="1yi7710vgcwz0jhishbga41sc6qyk83a0avmq01dvqjsz3cdfsfc"; depends=[reticulate]; }; - kerastuneR = derive2 { name="kerastuneR"; version="0.1.0.1"; sha256="09vvs6pbjdniyfip86kbfrfyjzqzvf382sba4c733ww8qgbngv9i"; depends=[data_table dplyr plotly reticulate rjson RJSONIO rstudioapi tensorflow tidyjson]; }; + kerastuneR = derive2 { name="kerastuneR"; version="0.1.0.2"; sha256="0qfagzyid7g89hy8w7hgccp6pm78b5d8857q2zn2ixq6s9rp16kj"; depends=[crayon data_table dplyr echarts4r keras magick plotly reticulate rjson RJSONIO rstudioapi tensorflow tidyjson]; }; kerdiest = derive2 { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; }; kergp = derive2 { name="kergp"; version="0.5.1"; sha256="16zb7gsbp3bg4kpn7lszw8rn24i40f6jmxcf751vca1f7pfn38pj"; depends=[doFuture doParallel lattice MASS nloptr numDeriv Rcpp testthat]; }; - kernDeepStackNet = derive2 { name="kernDeepStackNet"; version="2.0.2"; sha256="04bdggxvggmppp289n2zw6ijdm7y05gws6z7bp6fr8n1zsxy2w3c"; depends=[caret DiceKriging DiceOptim GA GenSA glmnet globalOptTests lhs matrixStats mvtnorm Rcpp RcppEigen]; }; - kerndwd = derive2 { name="kerndwd"; version="2.0.2"; sha256="0nf5hyb274gn02n4lygwryv1jaqff77i040bd8gs1xykgvy6jxny"; depends=[]; }; kernelFactory = derive2 { name="kernelFactory"; version="0.3.0"; sha256="001kw9k3ivd4drd4mwqapkkk3f4jgljiaprhg2630hmll064s89j"; depends=[AUC genalg kernlab randomForest]; }; kernelPSI = derive2 { name="kernelPSI"; version="1.1.1"; sha256="1gnp3ixqmijy6xanlc4l8255biwxmlfyhd3y68arry9rzfjkmxpz"; depends=[CompQuadForm kernlab lmtest pracma Rcpp RcppArmadillo]; }; kernelTDA = derive2 { name="kernelTDA"; version="1.0.0"; sha256="0nzb2z10c3pqj8p47w663mrnmk3g8x61zz99ka8fwcspw1wq3g8m"; depends=[BH mvtnorm Rcpp RcppEigen Rdpack]; }; @@ -9486,8 +9826,8 @@ in with self; { kernlab = derive2 { name="kernlab"; version="0.9-29"; sha256="0vqhndl4zm7pvkfvq0f6i9cbrm7pij6kmdp7d7w39pa100x6knn3"; depends=[]; }; kernplus = derive2 { name="kernplus"; version="0.1.2"; sha256="0z5zpj89nw7cdphg6frmjwqjxsl6g95xsa8zgsxmw2q75wwj1saz"; depends=[circular KernSmooth mixtools]; }; kernscr = derive2 { name="kernscr"; version="1.0.5"; sha256="1kcj710q8jbc34g6fcv2nk07hpsb81mfx8hvivgxq8x58028gjzs"; depends=[MASS mvtnorm]; }; - keyATM = derive2 { name="keyATM"; version="0.1.0"; sha256="0jska1nzwbb7lmm18wpa99jdgvv7mgl1cm47k7qspg1jmx5alj5d"; depends=[dplyr fastmap ggplot2 ggrepel magrittr Matrix purrr quanteda Rcpp RcppEigen RcppProgress rlang stringr tibble tidyr]; }; - keyholder = derive2 { name="keyholder"; version="0.1.4"; sha256="1k648a16015qq29msls2s5y5ql9myi1908klih5gj09pf2fr93wq"; depends=[dplyr rlang tibble]; }; + keyATM = derive2 { name="keyATM"; version="0.3.1"; sha256="1bi7hs1d70y5xpf3rh3g0vnn558y6fvxknyl491h737ps87rd77i"; depends=[dplyr fastmap ggplot2 ggrepel magrittr Matrix purrr quanteda Rcpp RcppEigen RcppProgress rlang stringr tibble tidyr]; }; + keyholder = derive2 { name="keyholder"; version="0.1.5"; sha256="0sr0rcchvwflqf2xj9j8j35ng52ichgvp1ix57v4ah91dlpj9i5s"; depends=[dplyr rlang tibble]; }; keyplayer = derive2 { name="keyplayer"; version="1.0.3"; sha256="0j4n46r9ivkbzqz8g22dq2bpmx7bs05yb5qp27p9jnfh5x19v2ds"; depends=[igraph matpow sna]; }; keypress = derive2 { name="keypress"; version="1.2.0"; sha256="19l33519f726i3q20y34v1aavrn4fpj3zn5caij3l9q2asw2kqk2"; depends=[]; }; keyring = derive2 { name="keyring"; version="1.1.0"; sha256="1hpfd4hbx43i39l995rg86kfxi7wlyla1gv8mwcdr4xx7z122zzq"; depends=[assertthat filelock getPass openssl R6 rappdirs sodium yaml]; }; @@ -9502,17 +9842,19 @@ in with self; { kin_cohort = derive2 { name="kin.cohort"; version="0.7"; sha256="0wijsjz0piz5j9rm2nr3d5dfpiyba740mbfbkmfll9pz72s58wz8"; depends=[survival]; }; kineticF = derive2 { name="kineticF"; version="1.0"; sha256="1k54zikgva9fw9c4vhkc9b0kv8sq5pmc962s8wxr6qv97liv9p46"; depends=[circular lqmm MASS plotrix sp splancs]; }; kinship2 = derive2 { name="kinship2"; version="1.8.5"; sha256="1mhnb805l1q5n4nf1gqb0jw8nbpg1yc0l1c61k3zr7mdrjv2dhkj"; depends=[Matrix quadprog]; }; - kirby21_base = derive2 { name="kirby21.base"; version="1.7.0"; sha256="0drm9h1f91yb75v9jzcaysj2cijcana949xvq8bgkqklmf9zwfl5"; depends=[git2r]; }; + kirby21_base = derive2 { name="kirby21.base"; version="1.7.3"; sha256="1ymhldippxybj6lkh7ibpix68285rdsyw28krjndyzvx39jl78gj"; depends=[git2r]; }; kirby21_fmri = derive2 { name="kirby21.fmri"; version="1.7.0"; sha256="1z2l6bn53mwkll9ki4169lqlz6wcfp29xzdrqyw606j2xrs4wc22"; depends=[kirby21_base]; }; kirby21_t1 = derive2 { name="kirby21.t1"; version="1.7.0"; sha256="0bv8rrk9jh02h3gill1g2w246j4zv98cjchz7i2c092lvqps8szs"; depends=[kirby21_base]; }; kissmig = derive2 { name="kissmig"; version="1.0-3"; sha256="1pi1x3gdbqrhr1km1hqj15k8wyrgs697fnxgjgxga1irbn8bi482"; depends=[raster]; }; - kitagawa = derive2 { name="kitagawa"; version="2.2-2"; sha256="0hl2l42jz4wkcx94cqycw8zb3ffg72fp2f310sh5icrcnyw43bmp"; depends=[kelvin]; }; - kiwisR = derive2 { name="kiwisR"; version="0.1.8"; sha256="0nncb1xvic0gmj4gllsk1lgwsizlq3vsnifjcf4dp716iik0h0sr"; depends=[dplyr httr jsonlite lubridate purrr tibble]; }; + kit = derive2 { name="kit"; version="0.0.4"; sha256="1gjp8r1qhmwf65c5mr94fx5v2h7hgczn47b2glrahzfyh6g5796s"; depends=[]; }; + kitagawa = derive2 { name="kitagawa"; version="3.1.0"; sha256="190xi88zc3vybpyawayh8m78sgcn951n3axmc2fc67sic458r02s"; depends=[Bessel kelvin psd]; }; + kiwisR = derive2 { name="kiwisR"; version="0.2.0"; sha256="14fzf72swy221jcbiplss9dh7g03idrpbbyvbxp4bcqpxwr6hbsa"; depends=[dplyr httr jsonlite lubridate purrr tibble]; }; kknn = derive2 { name="kknn"; version="1.3.1"; sha256="1nzkg3dxaiqp87p56wm895qx5xn86hv5hjr73qvl1yiaxiq0x112"; depends=[igraph Matrix]; }; klaR = derive2 { name="klaR"; version="0.6-15"; sha256="1bhgkq6spjawy5lsh663rnby4fzrx4k2qwqp4ci4p9pq8g35pzjv"; depends=[combinat MASS questionr]; }; klassR = derive2 { name="klassR"; version="0.1.2"; sha256="1wfgqy4pfbaikm0qqf6dirjw0imbl6si9i0nwn8l17i7c8g8g55s"; depends=[httr jsonlite tm]; }; klausuR = derive2 { name="klausuR"; version="0.12-10"; sha256="12fjs4dnwaki8sz718xgsg8qrqhsgf87cs0bylf0p3f5k8hrmk4b"; depends=[polycor psychometric xtable]; }; - klic = derive2 { name="klic"; version="1.0.2"; sha256="1fwzm6cn9jx1xi2ffn21nq6h3i46saiawjk5kdhwwjp8vy83krys"; depends=[cluster coca gplots Matrix pheatmap RColorBrewer wesanderson]; }; + klexdatr = derive2 { name="klexdatr"; version="0.1.0"; sha256="1ffcpiy1h92rn9nbysq6cca75varnam95s7li4dp7f58ibbhmxqc"; depends=[]; }; + klic = derive2 { name="klic"; version="1.0.4"; sha256="1ggsdq8xcg6hi12rq356myhngx3j475gpwlvpynm1581r4z0lkbk"; depends=[cluster coca Matrix pheatmap RColorBrewer]; }; klustR = derive2 { name="klustR"; version="0.1.0"; sha256="1g2q6h3cbm8v3gqz0f6v8bl5na9972k38d94czjfxmx4cv7wfgx8"; depends=[htmlwidgets jsonlite]; }; km_ci = derive2 { name="km.ci"; version="0.5-2"; sha256="1l6kw8jppaa1802yc5pbfwwgac56nhwc9p076ivylhms4w7cdf8v"; depends=[survival]; }; kmc = derive2 { name="kmc"; version="0.2-4"; sha256="0y8bdgdxsz53fiqc2yr39agndxs4zxj7mmplj273map9k0slnnqk"; depends=[emplik Rcpp rootSolve]; }; @@ -9529,14 +9871,14 @@ in with self; { kmodR = derive2 { name="kmodR"; version="0.1.0"; sha256="1y1pqrrralklflyb1dw8bslfcyqrw8ryijfbhkwba7ykpxcf9fda"; depends=[]; }; knitLatex = derive2 { name="knitLatex"; version="0.9.0"; sha256="1igacc2sx8897wmnhh8kngd0fq6zqbi30chy5c8jw60zc38mi3wi"; depends=[knitr]; }; knitcitations = derive2 { name="knitcitations"; version="1.0.10"; sha256="0d73qr1zhkx0255vzzf7fs8vpmfnzl91ni4zp5y0l42h8p98vdn5"; depends=[digest httr RefManageR]; }; - knitr = derive2 { name="knitr"; version="1.28"; sha256="0ai382fmpz25qrhdgchs3vph2cdvyd73xyryg4jby5fp67d03vh5"; depends=[evaluate highr markdown stringr xfun yaml]; }; + knitr = derive2 { name="knitr"; version="1.29"; sha256="00rcwiq8znmk5h4qgrwd0639xyb38iwbjykqjk3disz3kvrcvbn1"; depends=[evaluate highr markdown stringr xfun yaml]; }; knitrBootstrap = derive2 { name="knitrBootstrap"; version="1.0.2"; sha256="1aj60j7f0gcs120fdrnfbnb7vk7lfn1phil0mghg6a5zldz4cqs3"; depends=[knitr markdown rmarkdown]; }; knitrProgressBar = derive2 { name="knitrProgressBar"; version="1.1.0"; sha256="18v5jrscfrin3mcs63bpj0q1drxk3zkhlbw93sqh0qrq04d4x02v"; depends=[R_oo R6]; }; + knitrdata = derive2 { name="knitrdata"; version="0.5.0"; sha256="1p7bfs7k6dd18mly4l830flrw1fbn6y8wigpvs2phl585jf4c7av"; depends=[base64enc knitr]; }; knn_covertree = derive2 { name="knn.covertree"; version="1.0"; sha256="0msfcmwydws7q7m5jdb0dxab0nkbl7mq5llg6v3r4qrnlvrdggvz"; depends=[Matrix Rcpp RcppEigen]; }; - knnGarden = derive2 { name="knnGarden"; version="1.0.1"; sha256="1gmhgr42l6pvc6pzlq5khrlh080795b0v1l5xf956g2ckgk5r8m1"; depends=[cluster]; }; knnIndep = derive2 { name="knnIndep"; version="2.0"; sha256="1fwkldgs2994svf3sj90pwsfx6r22cwwa22b30hdmd24l8v9kzn7"; depends=[]; }; knnp = derive2 { name="knnp"; version="2.0.0"; sha256="0qgq8la3zndlb1wwqv9b2kw52y9ns36pi4ds68pkm81bhzq5nqis"; depends=[doParallel foreach forecast parallelDist plyr]; }; - knockoff = derive2 { name="knockoff"; version="0.3.2"; sha256="1ky69f3hwwgy2il097mx0z7aakxsq692g9ink8z8cb4wnrp4bk07"; depends=[corpcor glmnet gtools Matrix Rdsdp RSpectra]; }; + knockoff = derive2 { name="knockoff"; version="0.3.3"; sha256="1nswpchpk1ccvhlgz1h3ka3c65mjfrrykfgv824fyncmfxaz8lmw"; depends=[corpcor glmnet gtools Matrix Rdsdp RSpectra]; }; knor = derive2 { name="knor"; version="0.0-7"; sha256="1xxv210sjj9w06pf36q7haz9fkqdc17jyqdsiqsxj3q8zj585qfc"; depends=[Rcpp]; }; knotR = derive2 { name="knotR"; version="1.0-2"; sha256="0kd1b9wibpwyaanz9ny61qgfvcg4d3rzpy05sfshlpp0b1y8d3xj"; depends=[]; }; kntnr = derive2 { name="kntnr"; version="0.4.4"; sha256="1af5qhj82dixf1qcbz3sfj52pzgy8gnafzifwxnhrp7vpn4rnv6m"; depends=[base64enc dplyr httr jsonlite lubridate purrr rlang rstudioapi stringr tibble tidyr]; }; @@ -9547,17 +9889,18 @@ in with self; { kohonen = derive2 { name="kohonen"; version="3.0.10"; sha256="1ck7j13x701g67bx81x7plszz804jfhl1yg42krcj9x88vm5cscr"; depends=[Rcpp]; }; kokudosuuchi = derive2 { name="kokudosuuchi"; version="0.4.2"; sha256="1nwydfyr9waa5h8h8nrmwxy0jx7i4893g5khfv6b4g09z6g5cyly"; depends=[curl dplyr glue httr purrr rlang sf shiny stringr tibble xml2]; }; kolmim = derive2 { name="kolmim"; version="1.0"; sha256="0g1i0cazi4nhfwdd3ywqrar1sn7bw77w38qjii045w5vqg05srkp"; depends=[]; }; - komaletter = derive2 { name="komaletter"; version="0.3.2"; sha256="0gw86j9fvklz2x9hcl4h3kxjjki5fagmh2dskkpvabmgpk3725z1"; depends=[rmarkdown]; }; - konfound = derive2 { name="konfound"; version="0.2.1"; sha256="16c7wqifcsr4rmx6gi1n1lhmmn183gmgmqnvy9lc71vz6b8w31xq"; depends=[broom crayon dplyr ggplot2 mice purrr rlang tidyr]; }; + komaletter = derive2 { name="komaletter"; version="0.4"; sha256="0l9xd28vsy5xs27s8mxvj24fpx6s0c36cka9z3x09rdzdp6gwqn8"; depends=[rmarkdown]; }; + konfound = derive2 { name="konfound"; version="0.2.2"; sha256="0nz09wg0ia11q7hrnjxgvw8xzv25z7hi1sa35cwl7xa8rz5yi1gk"; depends=[broom broom_mixed crayon dplyr ggplot2 mice purrr rlang tidyr]; }; kosel = derive2 { name="kosel"; version="0.0.1"; sha256="1gdsy4i58byqxddpsm5nk1r3hlgik5gs2b8jqcm8n1r4ib6pg0ay"; depends=[glmnet ordinalNet]; }; kpcalg = derive2 { name="kpcalg"; version="1.0.1"; sha256="1gd5bisyfwb12l9jmwhi2arlxrabc01vgv4m1qqs23vybsd6yh52"; depends=[energy graph kernlab mgcv pcalg RSpectra]; }; kpeaks = derive2 { name="kpeaks"; version="1.1.0"; sha256="057xfqn08lqczgrj1r63d7vbncg24x9va9lnk8c47nwzl1x8aphd"; depends=[]; }; kpmt = derive2 { name="kpmt"; version="0.1.0"; sha256="15d26khc0v3kc1c7l1avqp48pfqmc6xj32029mv7myivr41ashk3"; depends=[matrixStats]; }; - kpodclustr = derive2 { name="kpodclustr"; version="1.0"; sha256="1fywgdj4q3kg8y9lwnj6vxg9cwgs5ccwj6m3knfgg92f8ghnsbsw"; depends=[clues]; }; + kpodclustr = derive2 { name="kpodclustr"; version="1.1"; sha256="1gwy59sh4gp06hr3il3hz0iiwdrzrlya5b026qxvz5q62msf6q5a"; depends=[]; }; kriens = derive2 { name="kriens"; version="0.1"; sha256="1qi65k9fsbbkbw0w40rv60p5ygrvr10rmlyxdaqa5bdpcmrbly5z"; depends=[]; }; - krige = derive2 { name="krige"; version="0.4.1"; sha256="1mpg1zqabgpi4f4dfnmlpdhs8hnc560sdpp41k4whjnbhqg9flxd"; depends=[invgamma MASS mvtnorm]; }; + krige = derive2 { name="krige"; version="0.5.6"; sha256="04y9am0jj0crybpr7p4qzdh158r1imllvy6697iakgzjlcqm5xd2"; depends=[Rcpp]; }; kriging = derive2 { name="kriging"; version="1.1"; sha256="04bxr34grf2nlrwvgrlh84pz7yi0r8y7dc2wk0v5h5z6yf5a085w"; depends=[]; }; - krm = derive2 { name="krm"; version="2019.12-11"; sha256="1dzgvj30bjq4af0470hyxad6bf1y676wk789gqf8rgfwywkk8rr6"; depends=[kyotil]; }; + krippendorffsalpha = derive2 { name="krippendorffsalpha"; version="1.0"; sha256="137x6y7ks9pan2zwqcpyap5f7d1pwa580aq29cynfimxacmgb5si"; depends=[]; }; + krm = derive2 { name="krm"; version="2020.5-20"; sha256="1b6477cjv5k30djvrlbmwn91ghgwk24cfd58cb0q80xqhgiqvrzb"; depends=[kyotil]; }; ks = derive2 { name="ks"; version="1.11.7"; sha256="1f6jvxy0hmngyvnvrknzbmhl42njk0vqyycvydm4qnp8cqirqvba"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm]; }; ksNN = derive2 { name="ksNN"; version="0.1.2"; sha256="06x471hck95xqy7rbh53ibhzh6kfjra7y9ipqdj2rqdkmfdj72q8"; depends=[Rcpp]; }; kselection = derive2 { name="kselection"; version="0.2.0"; sha256="1arg96r2pldvb89rfqnfpjxwksyac2mhmbimbkwzm7wrnbnrcn5d"; depends=[]; }; @@ -9567,12 +9910,13 @@ in with self; { kstIO = derive2 { name="kstIO"; version="0.3-0"; sha256="0pmgb7n4gvslzc6qhqga39593k45vimj1y774bfsxhsacsb1ad9l"; depends=[kstMatrix MASS pks relations sets stringr]; }; kstMatrix = derive2 { name="kstMatrix"; version="0.1-2"; sha256="1z5gs0x80dq549mba2sy1nfhsphrpkrydalj2jiwqb7fmwqknm3r"; depends=[]; }; ktaucenters = derive2 { name="ktaucenters"; version="0.1.0"; sha256="15ddjr4c90b5hc4977gk35zb2kswrcvai3xighy7qj6g9lgiszgf"; depends=[dbscan dplyr GSE MASS]; }; - ktsolve = derive2 { name="ktsolve"; version="1.2"; sha256="1606b9anlqjwcbf3jp1rpwzvyx94k79q6zw3p9j0a4nxdvgxlx1j"; depends=[BB nleqslv rootSolve]; }; + ktsolve = derive2 { name="ktsolve"; version="1.3"; sha256="0brxqb60m1lyqhsmds1c3c6cmbcxlzk2nwvi0fhkc8ziwzlfmd09"; depends=[BB nleqslv]; }; ktspair = derive2 { name="ktspair"; version="1.0"; sha256="1v63982jidxlcf2syahcb29myv34kc790l7lwyfxx9l50ssb812n"; depends=[Biobase]; }; kubik = derive2 { name="kubik"; version="0.2.0"; sha256="1f5v88pfm9szkshbnkkd0pdphqwrbblfmmys7j8k60y919lwgv0z"; depends=[]; }; kuiper_2samp = derive2 { name="kuiper.2samp"; version="1.0"; sha256="0gcgayh7qdic9zprdvs6r8qvpqs467zrm0qzp2acb7alcp01jhpi"; depends=[]; }; kulife = derive2 { name="kulife"; version="0.1-14"; sha256="070ayy6fr9nsncjjljikn2i5sp2cx3xjjqyc64y2992yx74jgvvd"; depends=[]; }; - kutils = derive2 { name="kutils"; version="1.69"; sha256="12pg26a85h0jxlfcyai68dbh4bq1gnq8v1ngi8k9qvafbrpc6gx8"; depends=[foreign lavaan openxlsx plyr RUnit xtable]; }; + kuniezu = derive2 { name="kuniezu"; version="0.1.1"; sha256="0aqfr4510syzc35ch7wgxrs0ibmqiyn9mhimi5gwshds7dirml3n"; depends=[dplyr ggplot2 leaflet magrittr parzer purrr sf stringr]; }; + kutils = derive2 { name="kutils"; version="1.70"; sha256="06jk66wbq3jmdf2jdhqns6r3yk36l2x7c907x977zv80sqxa1l37"; depends=[foreign openxlsx plyr RUnit xtable]; }; kvh = derive2 { name="kvh"; version="1.4.1"; sha256="0hnqlybphx8qnx98ynykxpz4ys4prp9zbmkak02qlvmnxwc2cqg0"; depends=[Rcpp]; }; kwb_hantush = derive2 { name="kwb.hantush"; version="0.3.0"; sha256="1rlm7i95yw66asgkag93phig2y9lic4xl2fv3cbnr3v751f6a59m"; depends=[hydroGOF lattice]; }; kyotil = derive2 { name="kyotil"; version="2019.11-22"; sha256="13ihijshgzi3lg07p24yzyxjsrfy9nsf6r5vcssz19y9w26scaj2"; depends=[]; }; @@ -9581,6 +9925,7 @@ in with self; { kzft = derive2 { name="kzft"; version="0.17"; sha256="1y6almhs1x21cr4bbf5fj3mnhp65ivzs869660cyg70sva853sv7"; depends=[polynom]; }; kzs = derive2 { name="kzs"; version="1.4"; sha256="1srffwfg0ps8zx0c6hs2rc2y2p01qjl5g1ypqsbhq88vkcppx1w9"; depends=[lattice]; }; l0ara = derive2 { name="l0ara"; version="0.1.6"; sha256="1cv48rbq080z7zx32hmlkpq7mi5axr09a1hyv3knl1vb9gql4qjq"; depends=[Rcpp RcppArmadillo]; }; + l1ball = derive2 { name="l1ball"; version="0.1.0"; sha256="1ryq1vfkwg465kgxbb2wf8df7qa85yr8lbx3a58j0az8dqkyzqix"; depends=[VGAM]; }; l1kdeconv = derive2 { name="l1kdeconv"; version="1.2.0"; sha256="1mk92sz9nsmxsn7yplhfcz07k022lrr61114ckrmm0x8hfd89zj8"; depends=[ggplot2 mixtools]; }; l2boost = derive2 { name="l2boost"; version="1.0.1"; sha256="0f2gapzpvjnr8n1jgn60jpmcas4s8nk2q8q4k5v4ypwvpfqp7kk1"; depends=[MASS]; }; laGP = derive2 { name="laGP"; version="1.5-5"; sha256="1a269cy9qmjldb5hv1nl9naq1rr35z37xjpp4kannj6p560fm476"; depends=[tgp]; }; @@ -9589,12 +9934,14 @@ in with self; { labelVector = derive2 { name="labelVector"; version="0.1.1"; sha256="156066jbsmqal1q4xwwkyrqfzq0as6r2add0x240y21zak6i8x9q"; depends=[]; }; labeledLoop = derive2 { name="labeledLoop"; version="0.1"; sha256="0gq392h0sab8k7k8bzx6m7z5xpdsflldhwbpdf92zbmkbzxsz00m"; depends=[]; }; labeling = derive2 { name="labeling"; version="0.3"; sha256="13sk7zrrrzry6ky1bp8mmnzcl9jhvkig8j4id9nny7z993mnk00d"; depends=[]; }; - labelled = derive2 { name="labelled"; version="2.2.2"; sha256="1hs83kb0z9ri7q1lpxczf65prf2kgpp7ljb7d5dx9bffqdy1j5h6"; depends=[dplyr haven]; }; + labelled = derive2 { name="labelled"; version="2.5.0"; sha256="0hxkig9y12rclzhk7ly7bdmysnxz0jymbbwz1apwb61frdswgb5h"; depends=[dplyr haven]; }; labelmachine = derive2 { name="labelmachine"; version="1.0.0"; sha256="18l7argmf7d60cv34w7acjg4bk08nhi2cc5p61sx2zmq28v8nndr"; depends=[yaml]; }; labelrank = derive2 { name="labelrank"; version="0.1"; sha256="03pmpkjdhgw80473kdzdz4s4828pa8f5bja2zqicxrhvyvicvz6f"; depends=[pdist]; }; + labourR = derive2 { name="labourR"; version="1.0.0"; sha256="0skr8qr1m849l3gpcsn5bjxyjczlzzmsm2j6xcmxv33lf95qg6gi"; depends=[cld2 data_table magrittr stopwords stringdist]; }; + labsimplex = derive2 { name="labsimplex"; version="0.1.2"; sha256="07is5vi1y7qw9fjhhjf65z6fm77v26qgy908zhhp2581qqyn0b5s"; depends=[ggplot2 scatterplot3d]; }; labstatR = derive2 { name="labstatR"; version="1.0.9"; sha256="1ysk23dwan1lsfwnf9v86yqyzc8wsgzmy18ycz34s4d9biq6y1zd"; depends=[]; }; labstats = derive2 { name="labstats"; version="1.0.1"; sha256="1780slp9l1rqwr5ika6hv606jzbaa3g1ywzkjkd3ff2gb0cby3ni"; depends=[]; }; - lacm = derive2 { name="lacm"; version="0.1.0"; sha256="0nlk9fzpbz55zzjizlwnsgfj9ik4zfq1s7b68yw1nndaq47lpljy"; depends=[numDeriv statmod]; }; + lacm = derive2 { name="lacm"; version="0.1.1"; sha256="01zd4zsas60kzxx4wsnxs6qqc72i4djwj8m7ryjyx5nrxgpjaixc"; depends=[numDeriv statmod]; }; lactcurves = derive2 { name="lactcurves"; version="1.0.0"; sha256="06dj8ajg6ndnyakywy16wbqjjr2jkidvnjv33vxcacwijympaqqy"; depends=[orthopolynom]; }; lacunaritycovariance = derive2 { name="lacunaritycovariance"; version="1.0-13"; sha256="041vldak0s24hci4fm2k1vwm5nvv1nxld94psiaz1v1fh4k781jm"; depends=[RcppRoll spatstat]; }; laeken = derive2 { name="laeken"; version="0.5.1"; sha256="199rjkhjjygpr6cjzab87as46acb5npi44m4yycvk7lnd0blma8s"; depends=[boot MASS]; }; @@ -9603,7 +9950,7 @@ in with self; { lagsarlmtree = derive2 { name="lagsarlmtree"; version="1.0-1"; sha256="1v3a580scxb1v5na3ab3ax9qlzbnay7nhm3ln5l8f9zgsqrg5lyh"; depends=[Formula partykit spatialreg]; }; lakemorpho = derive2 { name="lakemorpho"; version="1.1.1"; sha256="0asrp9rvyi5ykxw922qx25rgxvyc9mh4sc7qkbpwzqw8xvgpad2z"; depends=[cluster geosphere raster rgdal rgeos sp]; }; laketemps = derive2 { name="laketemps"; version="0.5.1"; sha256="04742r379bzgbfr4243wwkb26cvfmnw50jzgygq7vblq00grzska"; depends=[dplyr reshape2]; }; - lamW = derive2 { name="lamW"; version="1.3.0"; sha256="00qa1sxyqb2r7f9yidg43cq2v1285f45xpm3z928jpi424mpg0fc"; depends=[Rcpp RcppParallel]; }; + lamW = derive2 { name="lamW"; version="1.3.3"; sha256="12p5y7475plwkf5dql635wih71vz9ay8c4fr4adk5mj66kgzbpbl"; depends=[Rcpp RcppParallel]; }; lambda_r = derive2 { name="lambda.r"; version="1.2.4"; sha256="1mh1g0gsd58gng0hb29vww2yqb2jfs07kba5kxnnqck5j3izwlnj"; depends=[formatR]; }; lamme = derive2 { name="lamme"; version="0.0.1"; sha256="1x9jl79iqikpjixajly1k8w2nkzskns2m0v242giknl0ikw298h1"; depends=[]; }; landest = derive2 { name="landest"; version="1.0"; sha256="1lp5sfqk0n7i23fmwjgzsabml1fsji1h9xq5khxzaz1bzqv1s08g"; depends=[survival]; }; @@ -9611,14 +9958,14 @@ in with self; { landsat = derive2 { name="landsat"; version="1.1.0"; sha256="15ymmwhkgw0lqyy2sryss3nsmkrjf4cc0bzlsr41vh5c2636srfd"; depends=[lmodel2 mgcv rgdal sp]; }; landsat8 = derive2 { name="landsat8"; version="0.1-10"; sha256="169b5ka98ka9chbmksz6syaygc9wgl8i2gz1h2xkxj3lk9jcg01r"; depends=[rgdal sp]; }; landscapeR = derive2 { name="landscapeR"; version="1.2"; sha256="1zm5mj861ycbc2m28yjqnkifx8grc4l718mf8r422m78jfakvcjy"; depends=[raster Rcpp]; }; - landscapemetrics = derive2 { name="landscapemetrics"; version="1.4.3"; sha256="1yy9n4dg8q9r7h34rc40idqmvrgnd06fj95jcs6fwfdqnq78mc2j"; depends=[cli ggplot2 raster Rcpp RcppArmadillo sp tibble]; }; + landscapemetrics = derive2 { name="landscapemetrics"; version="1.4.6"; sha256="1ggczpxkm94x2b0vgjnnlmqykmqbin8w0m6bkffp1bmcwsx7pdl2"; depends=[cli ggplot2 raster Rcpp RcppArmadillo sp tibble]; }; landscapetools = derive2 { name="landscapetools"; version="0.5.0"; sha256="11zp6r414nkj8vhsbryzhkxmpal2bva8msaxf1v69xax70ilxyf1"; depends=[ggplot2 raster Rcpp tibble]; }; - landsepi = derive2 { name="landsepi"; version="0.0.8"; sha256="0k2hkrj0r3hx5jvmgx852s030md3cqhm7yixl0xxlkxwqrylw7qc"; depends=[fields maptools MASS Matrix Rcpp rgdal rgeos sf sp splancs]; }; + landsepi = derive2 { name="landsepi"; version="1.0.1"; sha256="1g6f7sa87jdkg5fi0jk58pwrv764ajm18jblymjjky5laczv5acf"; depends=[DBI doParallel fields foreach Matrix mvtnorm Rcpp RSQLite sf sp splancs testthat]; }; languageR = derive2 { name="languageR"; version="1.5.0"; sha256="1iipnr2b4hd2w718prbh075j56m5xnchlcb2vg26m16qpydp6afn"; depends=[]; }; languagelayeR = derive2 { name="languagelayeR"; version="1.2.4"; sha256="1q82shdcdd84nr6bnfwgyyb81z8dycvj1i3vhwvdg710s15rgiyk"; depends=[attempt curl httr jsonlite]; }; - languageserver = derive2 { name="languageserver"; version="0.3.5"; sha256="04i7pasvj2varq3khk6w0z1liwnwfr648gwvqz9qs7gkyknydp4y"; depends=[callr collections desc fs jsonlite lintr R6 repr stringi styler xml2 xmlparsedata]; }; + languageserver = derive2 { name="languageserver"; version="0.3.6"; sha256="0kmpjz1f4lji477l40qjii889z4vy4z837ryc01p1i957ca0gyr2"; depends=[callr collections desc fs jsonlite lintr R6 repr stringi styler xml2 xmlparsedata]; }; languageserversetup = derive2 { name="languageserversetup"; version="0.1.2"; sha256="05i8kcp1zpbkrqpq5vxxvxk9p7phyngxl0q6v76va0i7qnmy1v7a"; depends=[]; }; - lans2r = derive2 { name="lans2r"; version="1.0.5"; sha256="1m3hz85gl9m4vafdy7mj3z560d11mdwlwvnzy8n7d1cjqryn7a2b"; depends=[dplyr ggplot2 lazyeval R_matlab reshape2 tidyr]; }; + lans2r = derive2 { name="lans2r"; version="1.1.0"; sha256="0svqaz1j8vhfnm31bfp4gqshdj73wmljva4kxcv2qajmcdiqbd2s"; depends=[dplyr ggplot2 R_matlab reshape2 rlang tidyr]; }; lar = derive2 { name="lar"; version="0.1-2"; sha256="0qda0y4ag10kg83wxs3z754kc8c1dg2rwciy64klk7an4ln43i5b"; depends=[data_table treemap xlsx]; }; largeList = derive2 { name="largeList"; version="0.3.1"; sha256="0csijzlxajj0rh24w5n7fs6ss301zr6zfv5khyq4a9g437bwhc2i"; depends=[]; }; lars = derive2 { name="lars"; version="1.2"; sha256="0blj44wqrx6lmym1m9v6wkz8zxzbjax2zl6swgdczci0ixb5nx34"; depends=[]; }; @@ -9629,49 +9976,52 @@ in with self; { lassoshooting = derive2 { name="lassoshooting"; version="0.1.5-1"; sha256="0ixjw8akplcfbzwyry9p4bhbcm128yghz2bjf9yr8np6qrn5ym22"; depends=[]; }; latdiag = derive2 { name="latdiag"; version="0.3"; sha256="13wk8vhiwr9drcx5f4wlgbin6hc83zv54yr4h3qhjagm3hxcxbw0"; depends=[Rdpack]; }; latentnet = derive2 { name="latentnet"; version="2.10.5"; sha256="05yjf7a16imv1p2lg5dmfk183xll49crnkg0mbz4c4b39nksy85v"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; }; - later = derive2 { name="later"; version="1.0.0"; sha256="11xjavj7siz0xv2ffq1ld4bwl35jyrcfpvvs4p3ilpifxx49hyr7"; depends=[BH Rcpp rlang]; }; + later = derive2 { name="later"; version="1.1.0.1"; sha256="1k9n2j7zxw9gfclnx8zfqp6w64c5d6apn7g02yhkajkpmszagfki"; depends=[BH Rcpp rlang]; }; latex2exp = derive2 { name="latex2exp"; version="0.4.0"; sha256="12nbcgfmv13k6sc6m326ras9bcvy380b7rxcxphn06r3cfkby0zw"; depends=[magrittr stringr]; }; latexpdf = derive2 { name="latexpdf"; version="0.1.6"; sha256="07g33z5lyxinlrzpk6pd41m4c4bbfql611yqcqxasf8wra9bb0jr"; depends=[]; }; latte = derive2 { name="latte"; version="0.2.1"; sha256="1dcwxxj3yran5a3a8vvdfmx4ap69ql2jncxvmci4p4vcw4ki9j9g"; depends=[dplyr ggplot2 glue magrittr memoise mpoly stringr usethis]; }; lattice = derive2 { name="lattice"; version="0.20-41"; sha256="1dapkmh4jlb9sxfrpvapvlfhczl4s8p3r20bn47gcgdk1izmbjjl"; depends=[]; }; + latticeDensity = derive2 { name="latticeDensity"; version="1.1.6"; sha256="1s93zhdmncaa5c42wjmrar2f95rxjsdf1qphgdzb7g4f61vijxy9"; depends=[sp spam spatialreg spatstat spdep splancs]; }; latticeExtra = derive2 { name="latticeExtra"; version="0.6-29"; sha256="04fzwcqs594rk5qp98yilh3kdh3sw4xf8wld5rp94ggpaqfw7bbc"; depends=[jpeg lattice png RColorBrewer]; }; lava = derive2 { name="lava"; version="1.6.7"; sha256="0ffzxbb8pvfh1m6j61az4ga37snyhylq2941fyc76w7w9i2sixv3"; depends=[numDeriv SQUAREM survival]; }; lava_tobit = derive2 { name="lava.tobit"; version="0.5"; sha256="15dlcjgnvrpdxymcwf4rvk72ssr650dy1ayp50zlrp2va0p6h4kw"; depends=[lava mets mvtnorm survival]; }; - lavaSearch2 = derive2 { name="lavaSearch2"; version="1.5.5"; sha256="1rb330dzmknrgy2fzbgr76js1izd635sj3jxb7bmm4rfg2z09r6n"; depends=[doParallel ggplot2 lava MASS Matrix multcomp mvtnorm nlme Rcpp RcppArmadillo reshape2 sandwich]; }; - lavaan = derive2 { name="lavaan"; version="0.6-5"; sha256="04kvsh2m6mnzlhv83phr3hjzy4sx1ck6f7dgsm7xb8cs84dnxszy"; depends=[MASS mnormt numDeriv pbivnorm]; }; + lavaSearch2 = derive2 { name="lavaSearch2"; version="1.5.6"; sha256="0m5dwfmpcmicrpasx2raac2zylss416bxxgb3mg3abpll89iw9fx"; depends=[doParallel ggplot2 lava MASS Matrix multcomp mvtnorm nlme Rcpp RcppArmadillo reshape2 sandwich]; }; + lavaan = derive2 { name="lavaan"; version="0.6-7"; sha256="0ks62wrwghbm1brzmqvr92h5n1295dpc87m1g3xrfx0mkdaqdcdk"; depends=[MASS mnormt numDeriv pbivnorm]; }; lavaan_shiny = derive2 { name="lavaan.shiny"; version="1.2"; sha256="0qgswdpxb5af0l3v70sg0jrgsdwr88gz6zzwbk3pw5x6qnvnwb6r"; depends=[lavaan psych semPlot shiny shinyAce]; }; lavaan_survey = derive2 { name="lavaan.survey"; version="1.1.3.1"; sha256="133hpy8s00y6jzwwzl9brdh70w26jycdm3n1c6bcryghwh3ai4xr"; depends=[lavaan MASS survey]; }; lavaanPlot = derive2 { name="lavaanPlot"; version="0.5.1"; sha256="01bx1snd3zhc8dmq0f407qhw2d00f6d38qpr791qc1mq5kr3d8qj"; depends=[DiagrammeR lavaan stringr]; }; lawn = derive2 { name="lawn"; version="0.5.0"; sha256="0yvlps6g9ya383615y7x624hnwb6qfs6i5yg4cchp6lkvz2xdd5y"; depends=[jsonlite magrittr V8]; }; - lawstat = derive2 { name="lawstat"; version="3.3"; sha256="117w8b1skw9kh03dm67p17q6ifyh3zq2ivm85ix1nvpyrq3pcfvp"; depends=[Kendall mvtnorm Rdpack VGAM]; }; + lawstat = derive2 { name="lawstat"; version="3.4"; sha256="1zrx5lsqfxlqjr68iz9hqghsla4m25hn5lyf8jwhw5229sw0n7a1"; depends=[Kendall mvtnorm Rdpack]; }; lax = derive2 { name="lax"; version="1.1.0"; sha256="0awk5qg339fvx7vdln0xzc1yz8h0dxgq7ypbmak41ddfqkyjhf9a"; depends=[chandwich numDeriv revdbayes sandwich]; }; lazy = derive2 { name="lazy"; version="1.2-16"; sha256="1psh3sng1pm23pjwy7iszb21ys7d29ry34ymvpgxj6zdhywwi5n7"; depends=[]; }; lazyData = derive2 { name="lazyData"; version="1.1.0"; sha256="0mbmmx6dh8ph4lrx1b4gxbwz3jwxv4nqi0xvfzpzrm3bwbsjc634"; depends=[]; }; lazyWeave = derive2 { name="lazyWeave"; version="3.0.2"; sha256="1a7l0rgkp3xq2s6bikciq778fwyr282baa6jk9ip4a71s931p2ag"; depends=[Hmisc labelVector]; }; + lazyarray = derive2 { name="lazyarray"; version="1.1.0"; sha256="1bj1a8ab2479cl3d15h9f1fr1hh5d1p3sxpq8y84yzw0rrsxcldd"; depends=[fstcore R6 Rcpp yaml]; }; + lazybar = derive2 { name="lazybar"; version="0.1.0"; sha256="1hv9ciznbxv7xnaijfjqisq3lx8nd4vkdkj9clxpdsspi3inlf53"; depends=[R6]; }; lazyeval = derive2 { name="lazyeval"; version="0.2.2"; sha256="1m10i059csrcqkcn59a8wspn784alxsq3symzhn24mhhl894346n"; depends=[]; }; lazyraster = derive2 { name="lazyraster"; version="0.5.0"; sha256="0zf9xlxyzmgxy1nl2kg7fvpfamjz04gf4yxjn3r9j7fjkik35cnp"; depends=[quadmesh raster vapour]; }; - lazyrmd = derive2 { name="lazyrmd"; version="0.2.0.1"; sha256="0yzamy1bfq0d7mnrr24wzvvw6lq7rhfs6qnqypfmym65j5kfj0f8"; depends=[digest htmltools htmlwidgets knitr rmarkdown]; }; lazysql = derive2 { name="lazysql"; version="0.1.3"; sha256="18vff80rl8ckjwfqi9dhzs1q35a1wrxvynidji6dy2kvvk38xnpa"; depends=[checkmate magrittr plyr]; }; - lazytrade = derive2 { name="lazytrade"; version="0.3.10"; sha256="1m8wv5ii4inqw45nzqfqyrhzajr37mk9v4h8vxvy0ya00cibs9hb"; depends=[dplyr ggplot2 h2o lubridate magrittr openssl readr ReinforcementLearning stringr]; }; + lazytrade = derive2 { name="lazytrade"; version="0.3.11"; sha256="153rfx7725azbaa5i68dhzpqgzyshzv4w4fqqi5faymnwk2ncf2l"; depends=[dplyr ggplot2 h2o lubridate openssl readr ReinforcementLearning stringr]; }; lba = derive2 { name="lba"; version="2.4.4"; sha256="0izqndm992zv3sg8v5lpnxbdbxhpxl6hq3bf6xgq3pnw8vl3f6nb"; depends=[alabama MASS plotrix rgl scatterplot3d]; }; lbfgs = derive2 { name="lbfgs"; version="1.2.1"; sha256="0p99g4f3f63vhsw0s1m0y241is9lfqma86p26pvja1szlapz3jf5"; depends=[Rcpp]; }; lbfgsb3c = derive2 { name="lbfgsb3c"; version="2020-3.2"; sha256="07mhiaxhjjma5c65z3pz7wchgsqn4b19labzyq25ncnmj319fxrg"; depends=[numDeriv Rcpp RcppArmadillo]; }; lbiassurv = derive2 { name="lbiassurv"; version="1.1"; sha256="1i6l3y4rasqpqka7j39qjx22wjbilgc9pkp05an52aysfvfxy193"; depends=[actuar]; }; lbreg = derive2 { name="lbreg"; version="1.3"; sha256="1z9vixf6sl0k9lizngc3859lk32srkk1d8y133sl6s37ppmqb4s2"; depends=[MASS]; }; lcars = derive2 { name="lcars"; version="0.3.1"; sha256="14h6p4cbvx586zmaw480cy8gnjc6w7081dps9imvmf5lwcag66mb"; depends=[ggplot2 shiny trekcolors]; }; - lcc = derive2 { name="lcc"; version="1.0.4"; sha256="1g4j4m21jpxphw264kdnxnqnqlp29asc5h5qziqcbxdgmly087ns"; depends=[gdata ggplot2 gridExtra hnp nlme]; }; + lcc = derive2 { name="lcc"; version="1.1.0"; sha256="1wdxzmrsnrw7x4sfm95292i1q4v6xafzak2w46lf8d6s4qh1drsj"; depends=[doRNG doSNOW foreach gdata ggplot2 gridExtra hnp nlme]; }; lcda = derive2 { name="lcda"; version="0.3"; sha256="1ximsyn6qw2gfn7b1hdpbjs6h6nk7hrignlii0np1lbf0k8l4xxl"; depends=[poLCA]; }; lchemix = derive2 { name="lchemix"; version="0.1.0"; sha256="1g2w57fi6kvsyir14hnxh0v6xwjdnbisafvjxvn1g6a4h55dg9i0"; depends=[MCMCpack mvtnorm]; }; lclGWAS = derive2 { name="lclGWAS"; version="1.0.3"; sha256="03b6ijqvyirv96hc3dsqf4f0zzqlmq5451mcb14d2mw3s6xy1vmq"; depends=[BH Rcpp]; }; - lcmm = derive2 { name="lcmm"; version="1.8.1"; sha256="1n7g4m8r8n2zi53ah35gn0nx666fh6brbysgbsyb2yv4hjrf5v08"; depends=[survival]; }; + lcmm = derive2 { name="lcmm"; version="1.9.2"; sha256="0w58w7f7l51jc56n6vd3xsfr4c2hfd7qzgw328vppcm1ncq2g8mn"; depends=[survival]; }; lconnect = derive2 { name="lconnect"; version="0.1.0"; sha256="0wk1kx0awj6d9w4sn0csws0sksx9cb4b4l9xpjqnyavc4zfhxj8l"; depends=[igraph sf]; }; lcopula = derive2 { name="lcopula"; version="1.0.4"; sha256="11rjymm4zj3brifzrrfwqv9v8rzkzqk072xlzyjxm2p08dd11xxb"; depends=[copula pcaPP Rcpp]; }; lcpm = derive2 { name="lcpm"; version="0.1.1"; sha256="0pqmizli5rhyaxvxrjycf8d5kqrm23i3vdz00r8zmijjpiz2p9s2"; depends=[Matrix numDeriv plyr]; }; + lcra = derive2 { name="lcra"; version="1.1.2"; sha256="1kyjzb5ss64pg1sdnc8h7npcf4hsfgf4hhqh2yxl50d2zf4a4iyl"; depends=[coda rjags rlang]; }; + lcsm = derive2 { name="lcsm"; version="0.1.2"; sha256="1933n9wsyids0pfdmv2anglsxi2ibp5k14ifcvp4kmr1rq8wym7s"; depends=[broom data_table dplyr ggplot2 lavaan magrittr purrr rlang semPlot stringr tibble tidyr utf8]; }; lctools = derive2 { name="lctools"; version="0.2-8"; sha256="03k6d78lzc8jxndnwh39h6fagr6ibhr9354vzvsw873912sxs8c9"; depends=[MASS pscl reshape sp weights]; }; lcyanalysis = derive2 { name="lcyanalysis"; version="1.0.4"; sha256="0pwr6r8nbvmppqwd9gxap6v49l7iaq5syaq11spxp5yc2h3pa2rg"; depends=[quantmod TTR xts zoo]; }; lda = derive2 { name="lda"; version="1.4.2"; sha256="03r4h5kgr8mfy44p66mfj5bp4k00g8zh4a1mhn46jw14pkhs21jn"; depends=[]; }; - lda_svi = derive2 { name="lda.svi"; version="0.1.0"; sha256="1x72zqks8163qpmld21n5vn5q3jazp6g54arf53038rd0c59191q"; depends=[BH Rcpp RcppArmadillo Rdpack reshape2 tm]; }; - ldaPrototype = derive2 { name="ldaPrototype"; version="0.1.1"; sha256="0r78x7sn6mg4hgwydk1lgvfzkmgwkzqq0kvn8pqawx9pg8d8h4jb"; depends=[checkmate colorspace data_table dendextend fs lda progress]; }; + ldaPrototype = derive2 { name="ldaPrototype"; version="0.2.0"; sha256="19ls6ilirqdk4wbk8nf1jw6bd152z5ydchlp28wx5yrrjr694q9n"; depends=[batchtools checkmate colorspace data_table dendextend fs future lda parallelMap progress]; }; ldamatch = derive2 { name="ldamatch"; version="1.0.1"; sha256="1dmmjw7h0rrgwga7235bryzzvmx68gmkpy5v1pwvnkk4rxp8xamh"; depends=[car data_table entropy foreach gmp iterators iterpc kSamples MASS RUnit]; }; ldat = derive2 { name="ldat"; version="0.3.3"; sha256="1n8v4nzfv3ayr46ahrz60vasam8mx1phb4vss05d9xh7sxlkx7gv"; depends=[BH lvec Rcpp]; }; ldatuning = derive2 { name="ldatuning"; version="1.0.2"; sha256="0367y6k5i4sccwfcm89xyc62qblrlwnm6hsa2jf346rnrfz9hkkc"; depends=[ggplot2 reshape2 Rmpfr scales slam topicmodels]; }; @@ -9679,14 +10029,18 @@ in with self; { ldbounds = derive2 { name="ldbounds"; version="1.1-1.1"; sha256="10rmkidvvhwnrkc62c5ld44xhbvx1k8mch28h1yryakn8gznp3p8"; depends=[lattice]; }; ldhmm = derive2 { name="ldhmm"; version="0.5.1"; sha256="1jwgxwzz56n6hhpp1qks1x0jsfbrjgfsl6h5sp7498l4d2f279ij"; depends=[ecd ggplot2 moments optimx scales xts zoo]; }; ldr = derive2 { name="ldr"; version="1.3.3"; sha256="1c48qm388zlya186qmsbxxdcg1mdv3nc3i96lqb40yhcx2yshbip"; depends=[GrassmannOptim Matrix]; }; + ldsep = derive2 { name="ldsep"; version="1.0.0"; sha256="0h3gwjylmi0fx3gf7hqwjd58n9grmnv1phwqcj8dr0x6bn56bqy3"; depends=[ashr corrplot doParallel foreach lpSolve Rcpp RcppArmadillo]; }; + ldsr = derive2 { name="ldsr"; version="0.0.2"; sha256="0wmxpglad1mk2c1gi9kxmh149r8ad0l8i2xlfs1hdjb6a4wxsklr"; depends=[data_table foreach MASS Rcpp RcppArmadillo]; }; leabRa = derive2 { name="leabRa"; version="0.1.0"; sha256="08yiwyfg9bp4i9w5yyw9p63wyvgj39kd64y3h21j2jmpw8zxncdq"; depends=[plyr R6]; }; leaderCluster = derive2 { name="leaderCluster"; version="1.2"; sha256="1lqhckarqffm2l3ynji53a4hrfn0x7zab7znddia76r2h6nr02zb"; depends=[]; }; leafR = derive2 { name="leafR"; version="0.3"; sha256="0bb05y0py2q0qmvapbv3ibrycjb8i4adl25807i8l7g768y3llsr"; depends=[data_table lazyeval lidR raster sp]; }; leafSTAR = derive2 { name="leafSTAR"; version="1.0"; sha256="16zfaj0v6dx6mhy6m126lxa6w0dzfw4acm83jlbrizaz52amhv6a"; depends=[]; }; - leafem = derive2 { name="leafem"; version="0.1.1"; sha256="00wbi5mlrpy81py4g2l8hijyb07shk0cy2pxxb8xvy4sjgyq80jw"; depends=[base64enc htmltools htmlwidgets leaflet mapdeck png raster scales sf sp]; }; + leafem = derive2 { name="leafem"; version="0.1.3"; sha256="017kcyyvcf8v9dvvw2zyrwjwjpdgnzih64602z9qbnzsbv0ky4kg"; depends=[base64enc htmltools htmlwidgets leaflet png raster sf]; }; + leafgl = derive2 { name="leafgl"; version="0.1.1"; sha256="042jps6zh4xr0xj19a7fbgrcb6q6gsw2q5f191lyskr8iajdrz1h"; depends=[geojsonsf htmltools jsonify leaflet sf]; }; leaflet = derive2 { name="leaflet"; version="2.0.3"; sha256="053kn4a2lbhzq2c68c4q782yrbyx4a7zw7j1s6p7k2d75chk1aja"; depends=[base64enc crosstalk htmltools htmlwidgets leaflet_providers magrittr markdown png raster RColorBrewer scales sp viridis]; }; leaflet_esri = derive2 { name="leaflet.esri"; version="1.0.0"; sha256="01bwzxh2rdhpvvazaxsji8axl765q1ix1fdxla6i61nvqkpw3dz1"; depends=[htmltools leaflet leaflet_extras]; }; leaflet_extras = derive2 { name="leaflet.extras"; version="1.0.0"; sha256="0li7651cwlz7sg04xdrmvhkrf0n6amaydck7gqz0wkb6wq8hcyzw"; depends=[htmltools htmlwidgets leaflet magrittr stringr]; }; + leaflet_extras2 = derive2 { name="leaflet.extras2"; version="1.0.0"; sha256="1g75n6rz7zbr2jyh5qc1a3418l8jcm25d6av9yc9jf2yagbqlh28"; depends=[htmltools htmlwidgets leaflet magrittr]; }; leaflet_minicharts = derive2 { name="leaflet.minicharts"; version="0.6.0"; sha256="175zxyvgjbhhp5fl8fz8nr7n9y34ldhs9pnz602x1hk7vpyf3cjc"; depends=[htmltools leaflet]; }; leaflet_opacity = derive2 { name="leaflet.opacity"; version="0.1.0"; sha256="19dkl105sf7c9wrpl8kzwsjwwc7r9qb4c1g85w2lavpj0pbyazxw"; depends=[htmltools htmlwidgets]; }; leaflet_providers = derive2 { name="leaflet.providers"; version="1.9.0"; sha256="0yynrwv4xd5cdh49cwvfxm4ranarah9iiry2cd3b4fiihdfcg3wy"; depends=[]; }; @@ -9705,19 +10059,20 @@ in with self; { learnr = derive2 { name="learnr"; version="0.10.1"; sha256="08xwmms6x58y3dsfbl9c6d03145hb4ij97nqr1cc9dxxilmr6x31"; depends=[checkmate ellipsis evaluate htmltools htmlwidgets jsonlite knitr markdown rappdirs renv rmarkdown rprojroot shiny withr]; }; learnrbook = derive2 { name="learnrbook"; version="0.0.2"; sha256="1k17dk8ahn1ifwid1hhx0k7fpgc62zg82y66bbf6nhd4dgdbbv2p"; depends=[]; }; learnstats = derive2 { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; }; - leastcostpath = derive2 { name="leastcostpath"; version="1.2.1"; sha256="0fkkvdribvpis0gy951dn6ph0znziqfxjyhpl4mvzbsn0np75n34"; depends=[gdistance pbapply raster rgdal rgeos sp]; }; - ledger = derive2 { name="ledger"; version="2.0.6"; sha256="11j4mzkkgphpwda5g9wl0ppxh5kslx7gqip5b7frmq1vk08fxf1p"; depends=[dplyr rio rlang stringr tibble tidyr tidyselect]; }; + leastcostpath = derive2 { name="leastcostpath"; version="1.7.4"; sha256="1m8n8pliwm2bp03fqyrhwlq4ij90hvq1hg44mi6dc9m4qz36vfls"; depends=[gdistance pbapply raster rgdal rgeos sp]; }; + ledger = derive2 { name="ledger"; version="2.0.7"; sha256="07shnvawahm9bvwz37fynkp7sd69y9gc1mjhn7x8883jz8k4mjic"; depends=[dplyr rio rlang stringr tibble tidyr tidyselect]; }; leerSIECyL = derive2 { name="leerSIECyL"; version="1.0.2"; sha256="1zx28gpnys9mmhq7wwljfnq92wj1h1vxgqiirnfmn36z942nvmxl"; depends=[RCurl]; }; + lefko3 = derive2 { name="lefko3"; version="2.2.2"; sha256="1wzlz9f4admhy4ps72gc89zjrjbn5z8ld9y6y95kcx41mr258r26"; depends=[glmmTMB lme4 MASS MuMIn Rcpp RcppArmadillo RSpectra stringr]; }; legco = derive2 { name="legco"; version="0.1.3"; sha256="1615whdqihpzfhp5ll3x3jg4py04l52dc87kbdmgln4ygxyy5sqh"; depends=[httr jsonlite]; }; legislatoR = derive2 { name="legislatoR"; version="1.0"; sha256="1553hpb2cmv3hw6v4c7qwgg8n18jwx101yaqnmaaiv8gfyh6j43m"; depends=[curl dplyr]; }; legocolors = derive2 { name="legocolors"; version="0.2.0"; sha256="06jbq12jzga1p5jajhnnkk11s9gjw5ngmnrvhmbvirhsbafp0fjv"; depends=[]; }; leiden = derive2 { name="leiden"; version="0.3.3"; sha256="1hh6bmbz6cpqwl4i94gxylgv9x92zbqdg81r8r4ymfy8c70f3df2"; depends=[igraph Matrix reticulate]; }; leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; - lemon = derive2 { name="lemon"; version="0.4.4"; sha256="0m9hqwi709j9iwsxn8jh63741jiyr7ppwgqaw2zkv285p3m5wvd5"; depends=[ggplot2 gridExtra gtable knitr lattice plyr rlang scales]; }; + lemon = derive2 { name="lemon"; version="0.4.5"; sha256="1y3ljidhqdakxlya2npj2w0az820g8kw6gl1cfm4f0cxvzgd1ly4"; depends=[ggplot2 gridExtra gtable knitr lattice plyr rlang scales]; }; lenses = derive2 { name="lenses"; version="0.0.3"; sha256="08akwzlc5gk2rxbh9xp67n5ahdcld60932ascczjv0accrkxizhk"; depends=[magrittr rlang tidyselect]; }; leri = derive2 { name="leri"; version="0.0.1"; sha256="1309v58xdw3p6y2wpnl64vgsds5kvfiary2a3fa041kz23jzbp3c"; depends=[ncdf4 raster]; }; lero_lero = derive2 { name="lero.lero"; version="0.2"; sha256="03ll7jzcay0swwpmxyf0y9k2h8mxx4p5v3ggm9dgdz4j99934l70"; depends=[]; }; - lessR = derive2 { name="lessR"; version="3.9.3"; sha256="1r4hsznvrsy6cb1qwy5vnc9b8wbjsya87161z3w9crgxrw1dbls8"; depends=[colorspace ellipse foreign lattice latticeExtra leaps openxlsx png rmarkdown robustbase sas7bdat triangle viridisLite wesanderson]; }; + lessR = derive2 { name="lessR"; version="3.9.6"; sha256="0987s8r4z62cgvc4sixnyxsr5yaf1j0s532ini77f18zxxzn7g3h"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase triangle viridisLite]; }; lest = derive2 { name="lest"; version="1.1.0"; sha256="1d69kvdl31crv4ik8bwylq3s3f4skzrjc4x49c79w443g64n2jp9"; depends=[]; }; lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; }; letsR = derive2 { name="letsR"; version="3.2"; sha256="1ahmm290vgmdqnm7wz1fif1g31nsvqszkf921dpddv291xqmbksp"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; @@ -9726,8 +10081,9 @@ in with self; { lexiconPT = derive2 { name="lexiconPT"; version="0.1.0"; sha256="0w53gnr29nzc1ib54rnxdycs0c5f7vpv586qmvxxzy4ar16kisaq"; depends=[]; }; lfactors = derive2 { name="lfactors"; version="1.0.4"; sha256="1r8qlwj3zsm233jfx9ag0q5g1knvjmbwl3785pwcd12zi6f68dcc"; depends=[]; }; lfda = derive2 { name="lfda"; version="1.1.3"; sha256="0sk409jx4chs2wzhpfw7rlg9pwpdqg32ncfl3w243ypq73jq0qv3"; depends=[plyr rARPACK]; }; - lfe = derive2 { name="lfe"; version="2.8-5"; sha256="1hi3jw2s0xwly5lbvhs8ysm9ky69sixzcf7z6fwlsn9lsdrwb07x"; depends=[Formula Matrix sandwich xtable]; }; - lfl = derive2 { name="lfl"; version="2.0"; sha256="1qlsj2lhgz5ivdlyvlg3gjr99qy88nwf78app0bmb2abq3ym82sc"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; }; + lfe = derive2 { name="lfe"; version="2.8-5.1"; sha256="14yjgwjpz6rdj9pf345wxs2n0419gjwzl2gi87b4nvirjh5431wy"; depends=[Formula Matrix sandwich xtable]; }; + lfl = derive2 { name="lfl"; version="2.0.1"; sha256="1pbrm8zlpz1d057q5mgcz8kf3br925zsfsxir37l6raz83679q9i"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; }; + lfmm = derive2 { name="lfmm"; version="1.0"; sha256="0n7whmqxybv02k7nc0w5g2ncs43dyq3zdcnnn27vanq9mfxvhbjc"; depends=[foreach ggplot2 knitr MASS purrr Rcpp RcppEigen readr rmarkdown RSpectra]; }; lfstat = derive2 { name="lfstat"; version="0.9.4"; sha256="0lm9fyw45kdkkjldkmagykn9p3l3jlw2ky3h00f7j6rqkizjm6r0"; depends=[dygraphs lattice latticeExtra lmom lmomRFA plyr xts zoo]; }; lg = derive2 { name="lg"; version="0.4.1"; sha256="1srlklq6hkb4yd3lbbazswj866i3wzk2524hhj1v45yr7d5qhxv0"; depends=[ggplot2 ks localgauss logspline mvtnorm np tseries]; }; lgarch = derive2 { name="lgarch"; version="0.6-2"; sha256="05xksc4d6dbf5ls4lf2gpk9xyi99fikr7dva88b84rfgads1yhrh"; depends=[zoo]; }; @@ -9737,12 +10093,14 @@ in with self; { lgtdl = derive2 { name="lgtdl"; version="1.1.5"; sha256="1sixq56d2px36q0xq3kl0zwj2yzm3q8fhgqjvmajcdd5jl8l7130"; depends=[]; }; lhmixr = derive2 { name="lhmixr"; version="0.1.0"; sha256="1c4ydgq1z2y0xk8xqdsim6xvgxdbl3gglfk5kcr9k4m01arvv0rf"; depends=[]; }; lhs = derive2 { name="lhs"; version="1.0.2"; sha256="0n0i1hr9gmc0hfcs2cvpjvdfgm6k26rhcq3q22r8ic0gfj953572"; depends=[Rcpp]; }; - libcoin = derive2 { name="libcoin"; version="1.0-5"; sha256="1cm9x1dlg9f7fh7n5nw3x4a7rl88c7ylrlc8x3rx4mq5w1j42x0a"; depends=[mvtnorm]; }; + liayson = derive2 { name="liayson"; version="1.0.3"; sha256="10xkzy4vlszcdclrdv0d6nyzgh3ldr5rk59ml8bxx06dbh5c0h99"; depends=[ape arules biomaRt distances e1071 gplots matlab phangorn plyr proxy RColorBrewer]; }; + libcoin = derive2 { name="libcoin"; version="1.0-6"; sha256="0njfdbz4mkyasxm80p0fb0qibvzz7kdzddn8ybj2k6y8bx0w3bs8"; depends=[mvtnorm]; }; + libgeos = derive2 { name="libgeos"; version="3.8.1-3"; sha256="159mx1dlimfajpv8r34bc6pv1lxagi4b5jk08csy7qpbgvr8hg3c"; depends=[]; }; librarian = derive2 { name="librarian"; version="1.7.0"; sha256="0n3q2ppa3p0w8ypgx9s738pmprfbqi9qg8n58xzplp809p903dj9"; depends=[BiocManager remotes]; }; librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; }; libsoc = derive2 { name="libsoc"; version="0.7"; sha256="1r548rvj98wl0yp6jx5d2qhvy1y4883qp0w3jjk97vp07a1cywn8"; depends=[]; }; libstableR = derive2 { name="libstableR"; version="1.0.2"; sha256="1gkcgbc8a7ks9x8mqmlz98hk55q3qy62izam7csz1s0r5dzsyqcr"; depends=[Rcpp RcppGSL]; }; - lidR = derive2 { name="lidR"; version="2.2.4"; sha256="1p0swwwwmfnyzq9k3zf68cl1b4l2vg2d5xy0s4vs5xqjfprbffwd"; depends=[BH data_table future gdalUtils glue lazyeval raster Rcpp RcppArmadillo RCSF rgdal rgeos rgl rlas sf sp]; }; + lidR = derive2 { name="lidR"; version="3.0.3"; sha256="0y1dh3s71y6g4289zprvxq9b1klayak9swiwnbp1rlylk89da8bs"; depends=[BH data_table future gdalUtils geometry glue lazyeval raster Rcpp RcppArmadillo RCSF rgdal rgeos rgl rlas sf sp]; }; lifecontingencies = derive2 { name="lifecontingencies"; version="1.3.6"; sha256="0v8xrnmviq938x779f3h55iq8bhvbkwgz35v1dxgzbxwclj7jycl"; depends=[markovchain Rcpp]; }; lifecourse = derive2 { name="lifecourse"; version="2.0"; sha256="1m8ihqvzhzpq2m2pdvh37bpq9pdbj23r3y0jkl3q8farh3qj473d"; depends=[TraMineR]; }; lifecycle = derive2 { name="lifecycle"; version="0.2.0"; sha256="0912865c6675fsblrfdk6s568krsj1x8qbk1kipy7m05xs6nwx19"; depends=[glue rlang]; }; @@ -9750,12 +10108,13 @@ in with self; { lift = derive2 { name="lift"; version="0.0.2"; sha256="0ynsyl6lw7z7bvwzk2idgxzzqji5ffnnc3bll9h4gwdw666g7fln"; depends=[]; }; liftLRD = derive2 { name="liftLRD"; version="1.0-8"; sha256="1m24f4mc70l808cpkcdm91hzb5b3bkzibvgyfi9zs6cs8apcvmy3"; depends=[adlift nlt]; }; liftr = derive2 { name="liftr"; version="0.9.2"; sha256="0azi831c4f0vcq27a3q86vj90zvwrzcy4plhj9hqkk4qz8xw113x"; depends=[knitr rmarkdown rstudioapi stringr yaml]; }; - liger = derive2 { name="liger"; version="1.0"; sha256="0vn49p8ldb7ss35by04qh7r1arn5w8gci1rqbyfqw8ignwjrdc7s"; depends=[matrixStats Rcpp RcppArmadillo]; }; - lightr = derive2 { name="lightr"; version="1.1"; sha256="0qwz8c9d68sdb5592l8xwpj7kiwli6qg78a3w74vhk8hj8q18g0r"; depends=[future_apply progressr xml2]; }; + lifx = derive2 { name="lifx"; version="0.2.0"; sha256="0p9ljd3s3lc1rkhzpp801izy9y52f0yc1dsrsxwx5gi89cnib596"; depends=[assertthat crayon curl httr jsonlite]; }; + liger = derive2 { name="liger"; version="1.1.2"; sha256="0jfjvqg5bk7hlk58c0ywq2i4dvn3jv8fnrq4nzsv2hkb77hl45vh"; depends=[matrixStats Rcpp RcppArmadillo]; }; + lightr = derive2 { name="lightr"; version="1.3"; sha256="11z1n88cs0knpicpxfkzmh20p49g07syfv32sizjap2cnn7l4q3a"; depends=[future_apply progressr xml2]; }; lightsout = derive2 { name="lightsout"; version="0.3"; sha256="0ypniqf9wk35dd9j57wd7gxchr5hy25fwhmkndz2z8b9ajhm3c9b"; depends=[magrittr shiny shinyjs]; }; likeLTD = derive2 { name="likeLTD"; version="6.3.0"; sha256="1mjf4667xd9pf2684d7vqaj54l5s9pgljn4vkfp32wzbfknq6y8r"; depends=[DEoptim gdata ggplot2 gtools rtf]; }; likelihood = derive2 { name="likelihood"; version="1.7"; sha256="0q8lvwzlniijyzsznb3ys4mv1cqy7ibj9nc3wgyb4rf8676k4f8v"; depends=[nlme]; }; - likelihoodAsy = derive2 { name="likelihoodAsy"; version="0.50"; sha256="009alsxsv9fjpihp3zl0a94y6cvr49nh21skba64lzz9fypm9j8l"; depends=[alabama cond digest nleqslv pracma Rsolnp]; }; + likelihoodAsy = derive2 { name="likelihoodAsy"; version="0.51"; sha256="0qxwdf6npyj926zd2pbfscgz1z01hwgm6099h882d2l1sim2j9g7"; depends=[alabama cond digest nleqslv pracma Rsolnp]; }; likelihoodExplore = derive2 { name="likelihoodExplore"; version="0.1.0"; sha256="13cnql7pbx8qq1j3cfb3lkzzf2k55shpfa0jd00z30ys6imxzcfn"; depends=[lazyeval plyr]; }; likert = derive2 { name="likert"; version="1.3.5"; sha256="0c4irxs7pp1z8nj4s8cq23daw4h94n3h7x4f6q1d85614qcl9l3p"; depends=[ggplot2 gridExtra plyr psych reshape2 xtable]; }; lillies = derive2 { name="lillies"; version="0.2.7"; sha256="167hlqj9ivsjxhlfv3z1c017iqbj08aig86ncrk9inpqj3zvkyxy"; depends=[ddpcr dplyr knitr pracma progress rlang survival tidyr]; }; @@ -9770,17 +10129,18 @@ in with self; { linear_tools = derive2 { name="linear.tools"; version="1.3.0"; sha256="14lp3gifzbid82lkr7rdqajz2abp8m7y8irpwx6s8w66djjfckda"; depends=[ggplot2 magrittr plyr pryr scales stringr]; }; linearOrdering = derive2 { name="linearOrdering"; version="1.0.0"; sha256="1y9wcmcwbaqphzv8mk3xgk49pmd8m020zv3qmi85b5kzzqam1r4z"; depends=[]; }; linearQ = derive2 { name="linearQ"; version="2.0"; sha256="0sx7bx0x1k193day5w1dbmc09kn5741pcilxijjn2y5aijhd5wk9"; depends=[Rcpp stepR]; }; + lineartestr = derive2 { name="lineartestr"; version="1.0.0"; sha256="0bzsywk97j2mmsi7pj9267za1q2601crynh9kszwj6xjbg08nvsm"; depends=[dplyr forecast ggplot2 Matrix readr sandwich tidyr viridis]; }; linemap = derive2 { name="linemap"; version="0.1.0"; sha256="0qkbmpfr742xbs3xn5ppx6q0prwrr9mk1c1mv050cm47dm7jcs6l"; depends=[sf]; }; lineqGPR = derive2 { name="lineqGPR"; version="0.1.1"; sha256="180rvmpasdw8r3w5lw6dxg5jkj875dklvifi2msyp0vaq1nbpbwp"; depends=[broom ggplot2 MASS Matrix mvtnorm nloptr plot3D purrr quadprog tmg TruncatedNormal]; }; lineup = derive2 { name="lineup"; version="0.37-11"; sha256="0lk2wm8wsaaxw3j7yvmg6qif0r0s1jlwqyg73d3xjnjhxgy03zp4"; depends=[class qtl]; }; - lingtypology = derive2 { name="lingtypology"; version="1.1.2"; sha256="079xh4h8fwa9pm6q145fnvrj1bzi7j2lm7850qqmbqkpz62b1yg6"; depends=[leaflet leaflet_minicharts stringdist]; }; + lingtypology = derive2 { name="lingtypology"; version="1.1.3"; sha256="15l9c51xikhkykcmbnkaahlcpmd9gzyjwvnpz6dg75sh5lgpx5lp"; depends=[leaflet leaflet_minicharts stringdist]; }; linguisticsdown = derive2 { name="linguisticsdown"; version="1.2.0"; sha256="1y2g8h0p4q4mjrawzyprsdw8ynqcbpnjypyhdaf03pcwqglcirkl"; depends=[DT knitr magrittr miniUI rstudioapi shiny stringr]; }; link2GI = derive2 { name="link2GI"; version="0.4.3"; sha256="1f6pp8cw2cgg669dwgbsmcbq870y5v5qjbdkrrxzfxbyk4j24fqx"; depends=[devtools R_utils raster roxygen2 sf stringr]; }; linkR = derive2 { name="linkR"; version="1.1.1"; sha256="1748r7s5g0gvsmghrb7l5lmdbzb9f4vkbgj51v308jr64r1k7l93"; depends=[svgViewR]; }; linkcomm = derive2 { name="linkcomm"; version="1.0-12"; sha256="04725prwikkzqjq8say8b7f1k5z2c5qzsmsflynp1my893dlal0j"; depends=[dynamicTreeCut igraph RColorBrewer]; }; linkim = derive2 { name="linkim"; version="0.1"; sha256="0yvyid9x59ias8h436a202hd2kmqvn8k1zcrgja2l4z2pzcvfn91"; depends=[]; }; linkprediction = derive2 { name="linkprediction"; version="1.0-0"; sha256="0p2abdq6ad689236w2d0khlycpjgy6j7xrlb96ngl6csgxwm07bl"; depends=[igraph intergraph]; }; - linkspotter = derive2 { name="linkspotter"; version="1.2.0"; sha256="0wk27jn8jr5rskjxbixshmp2dl0l74hrc8r6x3rvhy0x0b00zks2"; depends=[dplyr energy ggplot2 Hmisc infotheo mclust minerva pbapply rAmCharts shiny tidyr visNetwork]; }; + linkspotter = derive2 { name="linkspotter"; version="1.3.0"; sha256="0fwkbz84vq0v5n5xgv1n99ph7qdz08hjj46ac4q293zarg1xk328"; depends=[dplyr energy ggplot2 infotheo mclust minerva pbapply rAmCharts shiny shinybusy tidyr visNetwork]; }; linl = derive2 { name="linl"; version="0.0.4"; sha256="1wq0wm3k12sfvg0nzdsdxb4qc79kny7qvckxplfgaj6y62vcjxxl"; depends=[knitr rmarkdown]; }; linpk = derive2 { name="linpk"; version="1.0"; sha256="14l3vv507z7x63ziynp07902599syah0icvzq4rxfjf48bf96l63"; depends=[mvtnorm]; }; linprog = derive2 { name="linprog"; version="0.9-2"; sha256="1ki14an0pmhs2mnmfjjvdzd76pshiyvi659zf7hqvqwj0viv4dw9"; depends=[lpSolve]; }; @@ -9796,16 +10156,20 @@ in with self; { list = derive2 { name="list"; version="9.2"; sha256="1gn0g4qq9rr6vwnwq6525hx7iy3q3vmy3g2v3ba69v4jcdc0a0mx"; depends=[arm coda corpcor gamlss_dist magic MASS mvtnorm quadprog sandwich VGAM]; }; listWithDefaults = derive2 { name="listWithDefaults"; version="1.2.0"; sha256="1rv9jq9zlr5dm08mimba6ni2p5vkfybrgrqk1alm7y6mqpx56byp"; depends=[assertthat]; }; listarrays = derive2 { name="listarrays"; version="0.3.1"; sha256="0nfpqywq9pl9yj566y0jw0h89g0ppsc614538ns1jc3l5r2myils"; depends=[]; }; + listcomp = derive2 { name="listcomp"; version="0.3.0"; sha256="09dazc1s06f2pk696jc64lnhs007hqrjjx6z2m6rrswp8yq1p2p2"; depends=[digest rlang]; }; + listdown = derive2 { name="listdown"; version="0.2.21"; sha256="0cv8vf4v35xkcsj3r8h6vx8y292qs3pjndhbgbb4lx78mfapcw1b"; depends=[crayon yaml]; }; listdtr = derive2 { name="listdtr"; version="1.0"; sha256="08drps03nndpdxswyv8bjm1bcckjav5pjj7fdx3dzyn0v4dfy619"; depends=[ggplot2]; }; listenv = derive2 { name="listenv"; version="0.8.0"; sha256="0ps8bk7zlhbviawrw7vw25skjq81hkk3ijyi6g74dmfqy8zsyapx"; depends=[]; }; listviewer = derive2 { name="listviewer"; version="3.0.0"; sha256="0zirxdj58h43062f68h6nqcgmpnvdglxx3kjbs4i4k0z9wvqhx8r"; depends=[htmltools htmlwidgets shiny]; }; liteq = derive2 { name="liteq"; version="1.1.0"; sha256="0w3w9f6374qwvlrqknavqh9b38n5q1r6aw5zmz5lahvadalwdbwi"; depends=[assertthat DBI rappdirs RSQLite]; }; - litteR = derive2 { name="litteR"; version="0.7.0"; sha256="070g65z50dqffa6c5b3n7yp3zmx9hpk7k3vspnpcmsgpd32r0h6n"; depends=[dplyr fs ggplot2 purrr readr rlang rmarkdown stringr tidyr yaml]; }; - littler = derive2 { name="littler"; version="0.3.9"; sha256="1l0680icgj835hb1b8kanh2zx7cmy3yghglr75qilbvsd4anhxyz"; depends=[]; }; + litteR = derive2 { name="litteR"; version="0.8.1"; sha256="1q10v7gpnpk6g35rw5sd50fj3syg0hmipv7cgmq456h48by5ffrx"; depends=[dplyr fs ggplot2 purrr readr rlang rmarkdown stringr tidyr tidyselect yaml]; }; + littler = derive2 { name="littler"; version="0.3.11"; sha256="1n3qps9hs9a00z0gksxskbl7ii678wpgjf348gb39a6y7rp4qdk7"; depends=[]; }; liureg = derive2 { name="liureg"; version="1.1.2"; sha256="1zhc5fs47whjvvwwiivykxfchzbjbldyvdmqh9rp7ccwba2q3956"; depends=[]; }; live = derive2 { name="live"; version="1.5.13"; sha256="1s6yrbwlc4wqszl2yvy1x6d93my18ba8sm8pwfy547cd1x055vig"; depends=[breakDown data_table dplyr e1071 forestmodel ggplot2 gower MASS mlr shiny]; }; livechatR = derive2 { name="livechatR"; version="0.1.0"; sha256="1k0z6q3s9iw962m1lwlx45p95flzl5jg1xh6ng426v9jh1yyrbb2"; depends=[data_table dplyr jsonlite magrittr purrr]; }; + liver = derive2 { name="liver"; version="1.0"; sha256="1czya4rn4bcvdzy7jajzgg765xzskmib9cvis2llk9ca9agwg4hg"; depends=[]; }; ljr = derive2 { name="ljr"; version="1.4-0"; sha256="0jby94ml8w6pwnxbmv6qfjww2myvvnn9vrmlqpdh71dhgp3z35py"; depends=[]; }; + llama = derive2 { name="llama"; version="0.9.3"; sha256="1jfypycivih5rps7gik6wk3zqlz2rl14kdib7j513ahs4l261hbx"; depends=[BBmisc checkmate ggplot2 mlr parallelMap plyr rJava]; }; llbayesireg = derive2 { name="llbayesireg"; version="1.0.0"; sha256="0jhkmrjkqfm1flwsbpv6060j6g7cj4ngm0drvrlvsiqpni0k96mh"; depends=[coda ggplot2 llogistic MASS MCMCpack Rcpp rstan StanHeaders]; }; lle = derive2 { name="lle"; version="1.1"; sha256="09wq7mzw48czp5k0b4ij399cflc1jz876fqv0mfvlrydc9igmjhk"; depends=[MASS scatterplot3d snowfall]; }; lllcrc = derive2 { name="lllcrc"; version="1.2"; sha256="06n1fcd3g3z5rl2cyx8jhyscq9fb52mmh0cxg81cnbmai3sliccb"; depends=[combinat data_table plyr VGAM]; }; @@ -9813,12 +10177,12 @@ in with self; { lm_beta = derive2 { name="lm.beta"; version="1.5-1"; sha256="0p224y9pm72brbcq8y1agkcwc82j7clsnszqzl1qsc0gw0bx9id3"; depends=[]; }; lm_br = derive2 { name="lm.br"; version="2.9.3"; sha256="1xadz0rygm58igk0ig0w45132gnsvjxvwqzca4m6v6i6lz9x55pf"; depends=[Rcpp]; }; lmPerm = derive2 { name="lmPerm"; version="2.1.0"; sha256="1ss2hcfxqvfq4n6hypv7jp0n0apby9payxzaswaysr5368lkidn3"; depends=[]; }; - lmQCM = derive2 { name="lmQCM"; version="0.2.1"; sha256="1gzd9nhdmjlq0q8gkrg8ipcl1r264mdfqms8mmk6141pfp4xih0g"; depends=[Biobase genefilter progress]; }; - lmSubsets = derive2 { name="lmSubsets"; version="0.4"; sha256="1qlljv5mdy648wk0r1ac6ak62f9n4x0dwxv8ic0v0rsxaq9q0pjz"; depends=[]; }; + lmSubsets = derive2 { name="lmSubsets"; version="0.5-1"; sha256="1m2hqy2issbp8y0saas21q9dvwqlrdqrzbmmz64rk1gjnjsaq4ch"; depends=[]; }; lmSupport = derive2 { name="lmSupport"; version="2.9.13"; sha256="0ln5c91mbxkymgnv2nw5m3nrm5bwckpikgb9x1qhmjc55m98wkb8"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; }; lmboot = derive2 { name="lmboot"; version="0.0.1"; sha256="1v7a3vlv0187mpg3y3pj7f3pbk1v5n6amw732chy10vdw5nmfkwd"; depends=[evd]; }; lmds = derive2 { name="lmds"; version="0.1.0"; sha256="130azb0nc2wwxv0qi8v5s4rd02p9lc92zwn634pv7b8awbw81i65"; depends=[assertthat dynutils irlba Matrix]; }; lme4 = derive2 { name="lme4"; version="1.1-23"; sha256="0qh29kqli0l3naylgb6jha6jllx4nwryr3hv9yk37blgyyql5mcr"; depends=[boot lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen statmod]; }; + lmeInfo = derive2 { name="lmeInfo"; version="0.1.1"; sha256="0d6r7vgsm603xg3bf8jwdbwk6kypkzyzlgzwkpif92m0nd4378bi"; depends=[nlme]; }; lmeNB = derive2 { name="lmeNB"; version="1.3"; sha256="03khn9wgjbz34sx0p5b9wd3mhbknw8qyvyd5pvllmjipnir63d3q"; depends=[lmeNBBayes numDeriv statmod]; }; lmeNBBayes = derive2 { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; }; lmeSplines = derive2 { name="lmeSplines"; version="1.1-10"; sha256="0fy6hspk7rqqkzv0czvvs8r4ishvs7zsf4ykvia65nj26w7yhyia"; depends=[nlme]; }; @@ -9828,10 +10192,8 @@ in with self; { lmerTest = derive2 { name="lmerTest"; version="3.1-2"; sha256="1qkdxx5sri65zgpb9gw4nkfkdam51kgy4hxclk5c40yk7y3p0n1q"; depends=[ggplot2 lme4 MASS numDeriv]; }; lmeresampler = derive2 { name="lmeresampler"; version="0.1.1"; sha256="13i0crk6agw5pcj3znvxj60jfsmncnir7ahwdczgm7kh08hk0f6l"; depends=[boot dplyr Matrix nlmeU plyr RLRsim]; }; lmf = derive2 { name="lmf"; version="1.2"; sha256="1xqlqmjl7wf5b2s2a1k1ara21v74b3wvwl4mhbj9dkdb0jcrgfva"; depends=[]; }; - lmfor = derive2 { name="lmfor"; version="1.4"; sha256="012bk6r6gf6y9skfch2pqr2irv70108sz1x6hakl1bifb4lgnbjp"; depends=[magic nlme spatstat]; }; - lmm = derive2 { name="lmm"; version="1.2"; sha256="1xymcizqfqh2jp0rxgfgniflyqzgcwg04g9mllva5xgc1ydcg69k"; depends=[]; }; - lmmen = derive2 { name="lmmen"; version="1.0"; sha256="0c1yy991bff1hp47rg89j5811l50kb9pdf76834jxh38dr3b4lsw"; depends=[glmmLasso glmnet lme4 lmmlasso mvtnorm quadprog]; }; - lmmlasso = derive2 { name="lmmlasso"; version="0.1-2"; sha256="1mvd38k9npyc05a2x7z0908qz9x4srqgzq9yjyyggplqfrl4dgsz"; depends=[emulator miscTools penalized]; }; + lmfor = derive2 { name="lmfor"; version="1.5"; sha256="1r301ajcp9ag23n0nw1rgwg8ss5cvinwqargbdg0jpqbhdrgaq7y"; depends=[magic nlme spatstat]; }; + lmm = derive2 { name="lmm"; version="1.3"; sha256="13b5rvdbzljir1fn4zxv2lshbga64vwzn6884izif9v5dkd5b29j"; depends=[]; }; lmmot = derive2 { name="lmmot"; version="0.1.4"; sha256="1a8msh9yvvd7cv1zxlxdv8arlfvxqghxzcxls23v6ifl5jf4d1p3"; depends=[MASS maxLik]; }; lmmpar = derive2 { name="lmmpar"; version="0.1.0"; sha256="1l3zjmlfjfn2wv4yayqzv6qrwaxk2sgx3hjx371b5fs54zspdj20"; depends=[bigmemory doParallel MASS matrixcalc mnormt plyr]; }; lmms = derive2 { name="lmms"; version="1.3.3"; sha256="1gralhk9plmpmdya7cfzgzwzr8ab47pz4f76kvlp03sp5gcy4063"; depends=[gdata ggplot2 gplots gridExtra lmeSplines nlme reshape2]; }; @@ -9843,15 +10205,16 @@ in with self; { lmreg = derive2 { name="lmreg"; version="1.2"; sha256="02a4nqqcfkjlq21mpk8abd4lj4ib2nps3ndf7zgmzygkd1z0df18"; depends=[MASS]; }; lmridge = derive2 { name="lmridge"; version="1.2"; sha256="091rznzh77bmsv7sw9xmsq6s9pnljyq7qyl74kgcxss718134jr3"; depends=[]; }; lmtest = derive2 { name="lmtest"; version="0.9-37"; sha256="02nasm0j2vwkhz11dxqixs23msy1s3yj0jps6949fmgh9gwjkjfx"; depends=[zoo]; }; + lmtp = derive2 { name="lmtp"; version="0.0.5"; sha256="1bw6sr9hg770w3v26in4hhayi1ghqpxk7za005h65dy6krwkrfhn"; depends=[cli future generics nnls origami progressr R6 slider]; }; lmvar = derive2 { name="lmvar"; version="1.5.2"; sha256="0wrny8yzk5y4mzpri6xv5wibbnbaxm0195lcbk5jrl5l5gs99bn6"; depends=[Matrix matrixcalc maxLik]; }; lmviz = derive2 { name="lmviz"; version="0.1.2"; sha256="06pl0gzsbpk6l7l5np2c2rv37d2b3mr7qhxd7z4yiqiaffdrmrpz"; depends=[lmtest mgcv shiny shinyjs]; }; lncDIFF = derive2 { name="lncDIFF"; version="1.0.0"; sha256="012dwrcp0pny59hvzj7mnyyc3nijcjgxc0dyx7ab2fknp9bhs5w8"; depends=[]; }; loa = derive2 { name="loa"; version="0.2.45.4"; sha256="0dcpadv453885a2s8l064zn1xswi2v819154j822jr22kd7bj57v"; depends=[lattice MASS mgcv plyr png RColorBrewer rgdal RgoogleMaps sp]; }; loadr = derive2 { name="loadr"; version="0.1.2"; sha256="1zqg90hxw6c3k3gd0caj8fh5ym3f97gsr9cvi6ndlzqh4957cd5n"; depends=[]; }; lobstr = derive2 { name="lobstr"; version="1.1.1"; sha256="0vkif17825x33cz8r89j0qph4wj5l8fzfgl8nh2g7m2v140cxjdq"; depends=[crayon Rcpp rlang]; }; - locStra = derive2 { name="locStra"; version="1.3"; sha256="1lrdjr63ybdmdm74b76ahc71d9vhrlqbcc9193s7kbhzcms7f60a"; depends=[Matrix Rcpp RcppEigen Rdpack]; }; + locStra = derive2 { name="locStra"; version="1.4"; sha256="0a9470cf78w0js7i93zgrih0vcb0kxf2vjj0a0p87zpr0h0xd9p6"; depends=[Matrix Rcpp RcppEigen Rdpack]; }; localICE = derive2 { name="localICE"; version="0.1.1"; sha256="1pyq6kdahsy9qa0jzmring48r0i9h4rkp8lxpf9afksgm1qn0c5z"; depends=[checkmate ggplot2]; }; - localIV = derive2 { name="localIV"; version="0.3.0"; sha256="0h5hjh30y5273qb7a4kdr3l63g9m9ni2avx5ccqv7xcv49jq296k"; depends=[KernSmooth mgcv rlang sampleSelection]; }; + localIV = derive2 { name="localIV"; version="0.3.1"; sha256="1z3q5hk6qfc1pzqdrxwm8y3am27648lfz66lm84bf8abifw4kk60"; depends=[KernSmooth mgcv rlang sampleSelection]; }; localModel = derive2 { name="localModel"; version="0.3.12"; sha256="1yg61zia8gqgzbg33k6q43ni04cj6y9l3k8vdcw8j1qzasnhz0b2"; depends=[ggplot2 glmnet ingredients partykit]; }; localgauss = derive2 { name="localgauss"; version="0.40"; sha256="0y0pcg2i7lr4wipxawn06hy0q11znhcn2ah6rqwnlyy8pab70pyq"; depends=[foreach MASS matrixStats]; }; localsolver = derive2 { name="localsolver"; version="2.3"; sha256="1d18rihzqf1f5j9agfp8jysll7lqk1ai23hkdqkn6wwxj442llv4"; depends=[]; }; @@ -9876,7 +10239,7 @@ in with self; { logcondiscr = derive2 { name="logcondiscr"; version="1.0.6"; sha256="08wwxsrpflwbzgs6vb3r0f52hscxz1f4q0xabr1yqns06gir1kxd"; depends=[cobs Matrix mvtnorm]; }; logger = derive2 { name="logger"; version="0.1"; sha256="00gfy2i58qn5na8cxxrkm1pvsw85xx2gdk0y6dzxhcjfx3wyplaw"; depends=[]; }; logging = derive2 { name="logging"; version="0.10-108"; sha256="13gd40ygx586vs6xcp6clg69a92aj8zxlk1rn3xzkx8klfjimjc5"; depends=[]; }; - loggit = derive2 { name="loggit"; version="1.2.0"; sha256="0nr6hmmdxgqaf3d0fjvc2l40vfwm6xsw5k87gcqdck0knal8pw7d"; depends=[dplyr jsonlite]; }; + loggit = derive2 { name="loggit"; version="2.1.0"; sha256="1ikzrzqsmn8436dimr88mdmvpqmq5wxfjdiy4hj5939wjnx4jnnm"; depends=[]; }; logiBin = derive2 { name="logiBin"; version="0.3"; sha256="06y5bqm3j6xdr1cd607v2sqkghnd2bv6bvxc6cz8dvp8jabqa0zm"; depends=[data_table doParallel foreach iterators partykit]; }; logihist = derive2 { name="logihist"; version="1.0"; sha256="1q3322rh3g31c5i80aw54pln0m1jgxmbx30cn31nlh3ijkvnpq9a"; depends=[ggplot2]; }; logistf = derive2 { name="logistf"; version="1.23"; sha256="0f1qn7q3h0qg2qdiz69ab03qvl4xhizqg304vjak72390nj25nss"; depends=[mgcv mice]; }; @@ -9887,8 +10250,10 @@ in with self; { loglognorm = derive2 { name="loglognorm"; version="1.0.1"; sha256="0rhx769a5nmidpbpngs2vglsbkpgw9badz3kj3jfmpj873jfnbln"; depends=[]; }; logmult = derive2 { name="logmult"; version="0.7.1"; sha256="0y9z5l93hm8p3r1rd6g11miqg1a02b9hy5mgcxv2q0hm1pg2vh0q"; depends=[gnm qvcalc]; }; lognorm = derive2 { name="lognorm"; version="0.1.6"; sha256="05a6djz06jblnx51x2r5gwb57l4wq6giz6kknsslzsl64xj275z1"; depends=[Matrix]; }; - logspline = derive2 { name="logspline"; version="2.1.15"; sha256="07ppq178la64yn34z7zk5wnz95s0k7fqixvsx8hx26g25adciq6z"; depends=[]; }; - lokern = derive2 { name="lokern"; version="1.1-8"; sha256="1dlyvgd2i4dckd8ic3x75r4sikwalch9b2f13xp5rhkzmfzbprxq"; depends=[sfsmisc]; }; + logr = derive2 { name="logr"; version="1.1.0"; sha256="1cbh73yfmdb2mg3y111ranb9p9ac30xlril3fspj2i2nv3svjivm"; depends=[]; }; + logspline = derive2 { name="logspline"; version="2.1.16"; sha256="12hkdi77vkic05p2vhap025xdcg1n53ywm239v18713pihdlj63l"; depends=[]; }; + lokern = derive2 { name="lokern"; version="1.1-8.1"; sha256="1z9bg10ppj0gpsazdh2mcbbd374075bm30p9dmr71mb87vxrk2r3"; depends=[sfsmisc]; }; + lolR = derive2 { name="lolR"; version="2.1"; sha256="0lrmn9lzyyfr1y0i7qp6xfpdxyisbkajwg0jkrqkiw687psnh2rc"; depends=[abind ggplot2 irlba MASS pls robust robustbase]; }; lolog = derive2 { name="lolog"; version="1.2"; sha256="1vd80ngq4558ahan1vhsql0wc578imm13fgrrgnzlrd91xncnnjf"; depends=[BH ggplot2 intergraph Matrix network Rcpp reshape2]; }; lomb = derive2 { name="lomb"; version="1.2"; sha256="09cp9c33x14b4did8baq3hi0b3rb2nhasjz7aav03031c0fq07zj"; depends=[]; }; longCatEDA = derive2 { name="longCatEDA"; version="0.31"; sha256="0dji41lsknfwmgb2fczzm37dm97wvi45rh878w7pwlzwdh9vq8va"; depends=[]; }; @@ -9900,11 +10265,12 @@ in with self; { longitudinalcascade = derive2 { name="longitudinalcascade"; version="0.3.2.1"; sha256="03nqglxyz6qfalxdnyh2aarxv3agn0b3r4nhsji4v9703h4m1fvg"; depends=[dplyr ggplot2 lubridate rlang scales survival tidyr zoo]; }; longmemo = derive2 { name="longmemo"; version="1.1-2"; sha256="01rj5x9cgscsrakbx9155mbvs35fd3j484cfz5cds9vl521fjr3r"; depends=[]; }; longpower = derive2 { name="longpower"; version="1.0-21"; sha256="0095jml46lchyp17gsqpjabq80xjddlvd4ir8y2jsg8sgd3pc8vs"; depends=[lme4 nlme]; }; - longurl = derive2 { name="longurl"; version="0.3.0"; sha256="0ysa70zlkk3ybddj3yd3vbhjnkjbrisiz5a2hgbjx10p33m1r3am"; depends=[dplyr httr purrr]; }; - loo = derive2 { name="loo"; version="2.2.0"; sha256="1hq1zcj76x55z9kic6cwf7mfq9pzqfbr341jbc9wp7x8ac4zcva6"; depends=[checkmate matrixStats]; }; + longurl = derive2 { name="longurl"; version="0.3.3"; sha256="16r6gzyfy7aq8sqdzvc6wqinfp0yj46bsz4yg8n3jf0jdyx0zrc8"; depends=[httr]; }; + loo = derive2 { name="loo"; version="2.3.1"; sha256="12z0k8lhz0rxygs5lc7076nw6qhk0pda8nxf65hkinfrf4dy53fr"; depends=[checkmate matrixStats]; }; lookupTable = derive2 { name="lookupTable"; version="0.1"; sha256="0ipy0glrad2gfr75kd8p3999xnfw4pgpbg6p064qa8ljqg0n1s49"; depends=[data_table dplyr]; }; - loon = derive2 { name="loon"; version="1.2.3"; sha256="0h6vbsdp7m9wawjswzzpx7sq8q06xj9l1ln11vfwsyfnp4c66bfs"; depends=[gridExtra]; }; - loon_data = derive2 { name="loon.data"; version="0.0.8"; sha256="164i9dbx8a2mwydrzr9bsbx1fqwhg3avl373jk6mpn51m290f8vc"; depends=[]; }; + loon = derive2 { name="loon"; version="1.3.1"; sha256="0l9cz4cw8i329rajz9vlm54ajxwx899h9jp9yqjr92ijh2x3il6d"; depends=[gridExtra]; }; + loon_data = derive2 { name="loon.data"; version="0.1.0"; sha256="197lmwmlkmmhyn16himc3cdpiqznqr2sg5vz1a00ipypxnhax1pl"; depends=[]; }; + loon_ggplot = derive2 { name="loon.ggplot"; version="1.0.1"; sha256="161i99nm5csfq7wvr941a4dr544b1qwma0zlnrlcsbsnixyk3a0w"; depends=[dplyr GGally ggplot2 gridExtra loon magrittr rlang stringr]; }; loop = derive2 { name="loop"; version="1.1"; sha256="1gr257fm92rfh1sdhsb4hy0fzwjkwvwm3v85302gzn02f86qr5dm"; depends=[MASS]; }; loopr = derive2 { name="loopr"; version="1.0.1"; sha256="1qzfjv15ymk8mnvb556g2bfk64jpl0qcvh4bm3wihplr1whrwq6y"; depends=[dplyr lazyeval magrittr plyr R6]; }; loose_rock = derive2 { name="loose.rock"; version="1.0.16"; sha256="0vk9zmiy730c1d397v5p7v8ywjv1wv9vabmhdjyrfdx7bijfy57m"; depends=[digest dplyr futile_options ggplot2 MASS reshape2]; }; @@ -9912,33 +10278,34 @@ in with self; { lorec = derive2 { name="lorec"; version="0.6.1"; sha256="0mgypd8awixh1lzbh5559br4k7vi3pfmwniqhgh68wc06sc6bn65"; depends=[]; }; lorentz = derive2 { name="lorentz"; version="1.0-2"; sha256="0napn1j6gwilskjnv2hjrxzrbcbh7cvfj578h0la9bpkm1xhi7di"; depends=[emulator magrittr tensor]; }; lori = derive2 { name="lori"; version="2.2.0"; sha256="1jsnfrkn6zn20gs8qhw5znfzaqp9j274yfqajcgfvy916j50acac"; depends=[data_table rARPACK svd]; }; - lotri = derive2 { name="lotri"; version="0.2.1"; sha256="0szhng56b4pa3wp4ffyvz647ad1xnk14xavnfqcr9wi022r22mc1"; depends=[Matrix]; }; + lotri = derive2 { name="lotri"; version="0.2.2"; sha256="069by47cw38pwa70fjy7p1pi1pany04p1idjkifdyblmqqdhw0rh"; depends=[]; }; lowmemtkmeans = derive2 { name="lowmemtkmeans"; version="0.1.2"; sha256="08zhdw48rzw47yzhg4s37bkliyngxs46cyb57dvng1s3m0w0dhvi"; depends=[Rcpp RcppArmadillo]; }; + lowpassFilter = derive2 { name="lowpassFilter"; version="1.0-0"; sha256="1f05z18nn3184rksmsarfz79bxn3gj760f1z9h5h3agqc180krm3"; depends=[Rcpp]; }; lpSolve = derive2 { name="lpSolve"; version="5.6.15"; sha256="1fpkyjyqykwa1dxnhiky01pm09syxg169lm7hpy39bdbg10vw9s6"; depends=[]; }; - lpSolveAPI = derive2 { name="lpSolveAPI"; version="5.5.2.0-17.6"; sha256="04ah9xjr3574i3sfif90f6mln1cxpq7ia2nza30j5pfijqr7vwgd"; depends=[]; }; + lpSolveAPI = derive2 { name="lpSolveAPI"; version="5.5.2.0-17.7"; sha256="1fsmipb97gglihrf424mz063fn67bf55jjahnbh53svkmm2qxg4y"; depends=[]; }; lpbrim = derive2 { name="lpbrim"; version="1.0.0"; sha256="1cbkzl23vgs9hf83ggkcnkmxvvj8867k5b9vhfdrznpqyqv1f2gp"; depends=[Matrix plyr RColorBrewer]; }; lpc = derive2 { name="lpc"; version="1.0.2.1"; sha256="1g1dzm7pcrbrdk1dmhbdhj58j69dzar41al3i8q4gysf3adqzsvv"; depends=[]; }; - lpdensity = derive2 { name="lpdensity"; version="1.0"; sha256="1rmddq8drvwdlqw9ggf3h8dcvx64hh6ha2v9zdxfjmi50zlcirg5"; depends=[ggplot2]; }; + lpdensity = derive2 { name="lpdensity"; version="2.0"; sha256="0zqrpps909x00sm9bhg1xh4sqy4lamn5qmad37v6zn0hw1hjvcpi"; depends=[ggplot2 MASS]; }; lpint = derive2 { name="lpint"; version="2.0"; sha256="0p1np8wlfbax0c7ysc5fs9dai8s00h1v0gan89dbd6bx06307w2r"; depends=[]; }; - lpirfs = derive2 { name="lpirfs"; version="0.1.7"; sha256="0s873vy9vbxbjrxrbwgz9nf483idqvjqbw35ns3h2sjpwhq5i60l"; depends=[doParallel dplyr foreach ggplot2 gridExtra lmtest plm Rcpp RcppArmadillo sandwich]; }; + lpirfs = derive2 { name="lpirfs"; version="0.1.9"; sha256="102r6avaliw1a8cj8zjn74i40gqfbxwjizplqlp2y9ik5q32g2yg"; depends=[doParallel dplyr foreach ggplot2 ggpubr gridExtra lmtest plm Rcpp RcppArmadillo sandwich]; }; lplyr = derive2 { name="lplyr"; version="0.1.12"; sha256="1wcab8wwdzpgb61q83gfn2d34vsrd3qa4xyb9sqna6krss1ii1in"; depends=[bazar dplyr lazyeval magrittr]; }; lpme = derive2 { name="lpme"; version="1.1.1"; sha256="0si90nkgl8bqk8yvd2igdsrngiwqh8891072pfpzipifnd0f5448"; depends=[decon flexmix locpol Rcpp RcppArmadillo]; }; lpmodeler = derive2 { name="lpmodeler"; version="0.2-1"; sha256="17k67l03dkjx61p4hwswghjm6awk0zx173x9xafxrfd8jrgsf6kf"; depends=[slam]; }; lpridge = derive2 { name="lpridge"; version="1.0-8"; sha256="0jk4l95z9rcdqkc8lpp4sf1mg2dqj67rhqw1iafrxy5lx4jfaqqx"; depends=[]; }; lqmm = derive2 { name="lqmm"; version="1.5.5"; sha256="15kyfpbvdgyxl6gjqinx79zq03axg36qgaqfc6zq4blyjlhj6i3c"; depends=[nlme SparseGrid]; }; - lqr = derive2 { name="lqr"; version="2.0"; sha256="0d1v9k3564cjk4s9l390b41621h7lwgsp84b1x79abxsp1d8vs3v"; depends=[numDeriv spatstat]; }; + lqr = derive2 { name="lqr"; version="2.11"; sha256="1h82031cq4h4syjx33zk2a2fixqa2bmrcnmh28knhm8agvb9yyxv"; depends=[numDeriv spatstat]; }; lrequire = derive2 { name="lrequire"; version="0.1.3"; sha256="03c8h9v2xhlv7bj5jv117a27gaqaly2kdxs9zyihsm9yh9rg3d79"; depends=[]; }; - lrgs = derive2 { name="lrgs"; version="0.5.3"; sha256="0aqz07vg3z52lq224mapwgwr9mspa7aswzdfngg6x933aqsha4gj"; depends=[mvtnorm]; }; + lrgs = derive2 { name="lrgs"; version="0.5.4"; sha256="0mf6wqlv21z68w81hvpmhgngvdsklf3x2678d9c9lxfmqmpv4a7y"; depends=[mvtnorm]; }; lrmest = derive2 { name="lrmest"; version="3.0"; sha256="1yddkgza672z9y0ipgl92pg9prhmr387zsqf0qbi9k2yzfz2vvs6"; depends=[MASS psych]; }; - lsa = derive2 { name="lsa"; version="0.73.1"; sha256="1af8s32hkri1hpngl9skd6s5x6vb8nqzgnkv0s38yvgsja4xm1g5"; depends=[SnowballC]; }; + lsa = derive2 { name="lsa"; version="0.73.2"; sha256="1a33irqa6qvbc02z12rgbgv8kxq2gmahy7j5bg8b23lvvaxif06b"; depends=[SnowballC]; }; lsasim = derive2 { name="lsasim"; version="2.0.1"; sha256="0nbffcgn8wkz07qs8ai3xwx11wfq6qcf95hjqmy4kdkf2k603mm5"; depends=[mvtnorm]; }; lsbclust = derive2 { name="lsbclust"; version="1.1"; sha256="1pbai58pfvhfcrd0nj13d54vrn9wrx2xapqhgqa1pkrjwbk5amj7"; depends=[clue doParallel foreach ggplot2 gridExtra mvtnorm plyr Rcpp reshape2]; }; lsbs = derive2 { name="lsbs"; version="0.1"; sha256="14aq80zg89lq7hffv1v1m4n7hbzqzxkazcga4y2fq40ij3v7kv6n"; depends=[ks Matrix numDeriv]; }; + lsdbc = derive2 { name="lsdbc"; version="0.1.0"; sha256="1dk07zlvwwfhlll21ql264gx94v3jvgidy3yvxidwmhnyc1vx80x"; depends=[]; }; lsdv = derive2 { name="lsdv"; version="1.1"; sha256="0rl1xszr9r8v71j98gjpav30n2ncsci19hjlc9flzs1s20sb1xpr"; depends=[]; }; - lsei = derive2 { name="lsei"; version="1.2-0"; sha256="1xl06fb3is744pxlh42wx5hn1h0ab1k31wnmsmh0524kxzcyp0a7"; depends=[]; }; lshorth = derive2 { name="lshorth"; version="0.1-6"; sha256="0nbjakx0zx4fg09fv26pr9dlrbvb7ybi6swg84m2kwjky8399vvx"; depends=[]; }; lsl = derive2 { name="lsl"; version="0.5.6"; sha256="1hwzklx1qp5ljc059j2hridg3caw4cgn7rbqs8xh2arzcvqdw3rb"; depends=[ggplot2 lavaan reshape2]; }; - lslx = derive2 { name="lslx"; version="0.6.9"; sha256="0jfy6j5z53daarv8d8vqsgqdiy6s720m7qlcvrhicc8drvj88mrm"; depends=[ggplot2 lavaan R6 Rcpp RcppEigen]; }; + lslx = derive2 { name="lslx"; version="0.6.10"; sha256="189gpp1ikcp5ld4avipwckdz997v1cx2zas5a8b54nv246kb5hmd"; depends=[ggplot2 lavaan R6 Rcpp RcppEigen]; }; lsm = derive2 { name="lsm"; version="0.2.0"; sha256="1rc55w526ss99parjb40w3fbqlxfkhzknxysmqn4fkxrhrylzqn5"; depends=[]; }; lsmeans = derive2 { name="lsmeans"; version="2.30-0"; sha256="1z35dzfgib0fk201gzjhgmnryhl3mkz50gz8g6nfv4mj9kzc5x5f"; depends=[emmeans]; }; lspartition = derive2 { name="lspartition"; version="0.4"; sha256="1n0pag5l4kx211dl5z9xbqijp7l04jcm0i6jgvkk2b0x9v32q4r5"; depends=[combinat dplyr ggplot2 MASS matrixStats mgcv pracma]; }; @@ -9957,12 +10324,12 @@ in with self; { ltsk = derive2 { name="ltsk"; version="1.0.8"; sha256="1ykgz5cas924kmq9ak2j8vhr7gg9s458qarqkmyg9wdfj1srqi7p"; depends=[fields gstat sp]; }; ltsspca = derive2 { name="ltsspca"; version="0.1.0"; sha256="0hgl2zd8y01z8mhnqg1hlv1l7klpwhwk7q8b99pw9vgnh1f2gnfs"; depends=[pracma Rcpp RcppArmadillo]; }; ltxsparklines = derive2 { name="ltxsparklines"; version="1.1.2"; sha256="1jnygg7wm2768lrrzball8rn8f60xy4nc3a18h4d32jpnbhifj13"; depends=[]; }; - lubridate = derive2 { name="lubridate"; version="1.7.8"; sha256="0g2m9dyhgds4shdrk76w7rqdl9msam4rii2qrhz12gipzhi9k89x"; depends=[generics Rcpp]; }; + lubridate = derive2 { name="lubridate"; version="1.7.9"; sha256="0wnjzvfkrgp2hkr8g5r5vcgcxmsq8bhdmkzkk0m93wr3fgh5xyfb"; depends=[generics Rcpp]; }; lucid = derive2 { name="lucid"; version="1.7"; sha256="0hrb8qlm8g4h1ziwxq7m53pf7g8fxhcb2xryavm6rniqpcx8yb7g"; depends=[nlme]; }; ludic = derive2 { name="ludic"; version="0.1.8"; sha256="1yvv3h7arm8hp89j9nr5vdl8ahxcpggi2qq431l7xbw9jka41qdp"; depends=[fGarch landpred Matrix Rcpp RcppArmadillo]; }; lue = derive2 { name="lue"; version="0.2.1"; sha256="0is5rd1dz91bzphmfbbzi3s6rgc5g9qza2r26k70xs67dgn0qbjq"; depends=[ncdf4 raster]; }; lulcc = derive2 { name="lulcc"; version="1.0.4"; sha256="00ymbp20kbjyzrsrxa262y0y7fj4jgsbqf56aapb657xvafxvy5q"; depends=[lattice raster rasterVis ROCR]; }; - lumberjack = derive2 { name="lumberjack"; version="1.1.4"; sha256="18idnirla4v0571gilc4qmjz2s25rsmjy4f1y98pdazrbxdllds9"; depends=[R6]; }; + lumberjack = derive2 { name="lumberjack"; version="1.2.0"; sha256="1m2xngsnf4iwwm5baxdaszb10wjp1zmszlzlfs4acr6lwzsq0fvh"; depends=[R6]; }; lunar = derive2 { name="lunar"; version="0.1-04"; sha256="0nkzy6sf40hxkvsnkzmqxk4sfb3nk7ay4rjdnwf2zym30qax74kk"; depends=[]; }; lutz = derive2 { name="lutz"; version="0.3.1"; sha256="15b8gzwykxyqycjba319jpsbny07j8ny9y4lnrg8mcf488ycz57y"; depends=[lubridate Rcpp]; }; luzlogr = derive2 { name="luzlogr"; version="0.2.0"; sha256="0n0cm94aianwcypa0gwdjvyy3dwbkfv6zi1gq2jn57b41fg20lq5"; depends=[assertthat]; }; @@ -9971,11 +10338,11 @@ in with self; { lvmcomp = derive2 { name="lvmcomp"; version="1.2"; sha256="08hs97bdz4n0bdhvqqq5xywfy140s69c750rn38criq4cw4gm3z7"; depends=[coda Rcpp RcppArmadillo]; }; lvnet = derive2 { name="lvnet"; version="0.3.5"; sha256="1wqqxavs2s0hmlifyaa1jrlc8hj4z72fkgjckkmh9m2r4jp9zy0g"; depends=[corpcor dplyr glasso lavaan Matrix mvtnorm OpenMx psych qgraph semPlot]; }; lvplot = derive2 { name="lvplot"; version="0.2.0"; sha256="01sisj2vbx2yb5w9cjzyaf9j46vh4kkw05xccq1f7wmsg69zmj6b"; depends=[ggplot2 RColorBrewer]; }; - lwgeom = derive2 { name="lwgeom"; version="0.2-3"; sha256="0zq85lgmqhxa0f8kgq616lbnh9ads3cwjrfyf9hf1h85wfg0fa6n"; depends=[Rcpp sf units]; }; + lwgeom = derive2 { name="lwgeom"; version="0.2-5"; sha256="0byhjqa2acns8mznl1ngnfygxxxyszvnq66qfg0smhhhdkwr67aa"; depends=[Rcpp sf units]; }; lxb = derive2 { name="lxb"; version="1.5"; sha256="16x1mvhxqhvibzmv6mlqcmkgic2sha1xagf7r2azmn4z8x1m9w6n"; depends=[]; }; lymphclon = derive2 { name="lymphclon"; version="1.3.0"; sha256="1jns41sk2rx1j3mg06dzy434k30gpfhbkn6s47fmyv1y8701vfl0"; depends=[corpcor expm MASS]; }; m2b = derive2 { name="m2b"; version="1.0"; sha256="0agzw67mmwrw1f61yn24z5w1pgjssdapg3li0a53i3ylnij45mzr"; depends=[caret caTools e1071 geosphere ggplot2 randomForest]; }; - m2r = derive2 { name="m2r"; version="1.0.0"; sha256="07zrqhva00jsp9da9ryzi8pjdrwri2mw0mqgg91r3rnl7id8safq"; depends=[gmp memoise mpoly pryr stringr]; }; + m2r = derive2 { name="m2r"; version="1.0.2"; sha256="0vwvpalap4z5x2004c92n0ka7i4l64ry5n8pmxs4vjpd8fyx91gc"; depends=[gmp memoise mpoly Rcpp stringr usethis]; }; mAr = derive2 { name="mAr"; version="1.1-2"; sha256="0i9zp8n8i3fxldgvwj045scss533zsv8p476lsla294gp174njr7"; depends=[MASS]; }; mBvs = derive2 { name="mBvs"; version="1.3"; sha256="0vxwdi45pd79c3lz507wlw2alvf501q27lwvd34j6y68p3vyv1vj"; depends=[]; }; mDAG = derive2 { name="mDAG"; version="1.2.2"; sha256="0k85sl0jmpcpiz92cz6x3kd8jc6yyfv9z4wm1kyaikcf5q4qlad4"; depends=[bnlearn logistf mgm nnet pcalg Rcpp RcppArmadillo]; }; @@ -9992,20 +10359,21 @@ in with self; { mSTEM = derive2 { name="mSTEM"; version="1.0-1"; sha256="0mh09mqqpq9k8jrxs9d39009idld3b4y98ik75czdy580jmdg7mm"; depends=[doParallel foreach latex2exp]; }; mSimCC = derive2 { name="mSimCC"; version="0.0.1"; sha256="1f15r214srcdb4yacmy4hq890a674iqd2s7bry5dk20k46qdl026"; depends=[doParallel foreach]; }; mStats = derive2 { name="mStats"; version="3.2.2"; sha256="0bvv2133813qfqbqx45x7g3h82jkz8b322ldjj89x2wxc7alwmhs"; depends=[]; }; + maGUI = derive2 { name="maGUI"; version="2.4"; sha256="0wzg6fsig51q0mh5cd3kkshz45sqn8qcw0zf3pnq58x9ml9hc59l"; depends=[affy amap annotate beadarray Biobase BiocManager Biostrings cairoDevice Category convert genefilter GEOmetadb GEOquery globaltest GO_db GOstats graph gWidgets2 gWidgets2RGtk2 impute KEGGgraph KEGGREST limma lumi marray oligo pdInfoBuilder RBGL Rgraphviz RGtk2 RSQLite simpleaffy ssize WGCNA]; }; maSAE = derive2 { name="maSAE"; version="2.0.1"; sha256="0c7vs0pc4yva726g2vly07r1dnf4ahdkdkq6y6ni0d1hgz296w87"; depends=[]; }; mable = derive2 { name="mable"; version="2.1.1"; sha256="14bjyij9m86bha1g79aay6x127aq6pqw3hgdklf943inggqb3ava"; depends=[aftgee icenReg survival]; }; maboost = derive2 { name="maboost"; version="1.0-0"; sha256="18d36cgvn8p75nidfr6al458jbzwc1i7x77y1ks50y9phrz3wf65"; depends=[C50 rpart]; }; macc = derive2 { name="macc"; version="1.0.1"; sha256="1qj4mlikbqrxa6m46527xmxdbk7b3l95z6jdgpmi0ifywjiv52a4"; depends=[car lme4 MASS nlme optimx]; }; machQA = derive2 { name="machQA"; version="0.1.4"; sha256="1rdrjy9sxql2c9y691a1jrmgsv7m1ihsschixxb6wc7aahf7mav6"; depends=[machina plyr]; }; machina = derive2 { name="machina"; version="0.1.6"; sha256="009mzqb5jgnilj9b5ldmm5600008bljlqacm8jjxvqsfnfdfg8zv"; depends=[DT httr jsonlite lubridate rhandsontable xts]; }; - macleish = derive2 { name="macleish"; version="0.3.5"; sha256="13s8fv9827xjcxxnf74n6f814v27v5jdss45wb5fdzq8ingaq41x"; depends=[dplyr etl lubridate readr sf]; }; - mada = derive2 { name="mada"; version="0.5.9"; sha256="1l07dbgm9ghvqq9gh7g6yjfvxk0iq8xfyxz03j4nklbs10k3a0pz"; depends=[ellipse mvmeta mvtnorm]; }; + macleish = derive2 { name="macleish"; version="0.3.6"; sha256="0n33di2f42b2gn8qhs49j8f99l8qgxzb9lqnv50hc9zxgli5ds1v"; depends=[dplyr etl lubridate readr sf]; }; + mada = derive2 { name="mada"; version="0.5.10"; sha256="1hllv371dm307nkpld0aszjyxfgnajr7gb9zwh40pyzw4q4a2rqb"; depends=[ellipse mvmeta mvtnorm]; }; maddison = derive2 { name="maddison"; version="0.1"; sha256="1ji51wnj0ybjd30b4bwn5npyswrmcfrbxcmdlngwzvca1knh8g1c"; depends=[]; }; - maditr = derive2 { name="maditr"; version="0.6.3"; sha256="12ycnn384k0hsxlwk2pc3qhaz6rk71sr5qg6harpv3y6w84df8n1"; depends=[data_table magrittr]; }; + maditr = derive2 { name="maditr"; version="0.7.4"; sha256="1b7vvg03xfcmizahlnjbxk67xmmgqi96bvp16d135jqgfijmg35f"; depends=[data_table magrittr]; }; madness = derive2 { name="madness"; version="0.2.7"; sha256="0vcpydqnpmg9rvvzyjyqvd3qgs42n8cr9cafai51989v2w2bcf85"; depends=[expm Matrix matrixcalc]; }; madr = derive2 { name="madr"; version="1.0.0"; sha256="0lzg75kphz4a0w6n0jbsq87g72jvrbkyas4j813mryq2nv4lmsl4"; depends=[]; }; madrat = derive2 { name="madrat"; version="1.64.5"; sha256="1gccfpzbm5cq9q288k86mq0madh8x9nhw06hrrcfjj5waqhi30lj"; depends=[assertthat digest magclass rlang spam stringr]; }; - mads = derive2 { name="mads"; version="0.1.5"; sha256="1ac34iff9hvl1bxk3gs5s3i311g9y59nd6v9jhvnfd6wfhck7krs"; depends=[mrds]; }; + mads = derive2 { name="mads"; version="0.1.6"; sha256="0nz1fg3gyj72k6dpkjnwqjvps0inv1qgk5vlc8ycj3k720qcsd81"; depends=[mrds]; }; madsim = derive2 { name="madsim"; version="1.2.1"; sha256="11gfyimbz363p5xy1x6rsz5fcgzcr55myc5aaz5lazjkcnfn17aq"; depends=[]; }; mafs = derive2 { name="mafs"; version="0.0.3"; sha256="1apacrk8y5b5ids62vd1kn2k28bya9pydxxmdw2dhjyzkgrakdhn"; depends=[cmprsk colorspace CombMSC Epi etm forecast forecastHybrid fracdiff ggplot2 ggseas gtable munsell numDeriv plyr quadprog Rcpp scales tictoc tidyr timeDate tseries zoo]; }; magclass = derive2 { name="magclass"; version="5.7.3"; sha256="072hcp9m80c1r2vdhk6xp9gpbmiljpslalzh1i9hh7h7hgvp0bj7"; depends=[abind maptools reshape2 sp]; }; @@ -10013,49 +10381,55 @@ in with self; { magicLamp = derive2 { name="magicLamp"; version="0.1.0"; sha256="1nfcnbqd6vawz8l3vgkbhmm462xdvaa4pn6axzmz8hl05xv2k3cv"; depends=[httr tibble]; }; magicaxis = derive2 { name="magicaxis"; version="2.0.10"; sha256="053l455si22mddc5cgihhnpkmxr2anfqvbzsa89djjpw5ah2vg1x"; depends=[celestial mapproj MASS plotrix RColorBrewer sm]; }; magicfor = derive2 { name="magicfor"; version="0.1.0"; sha256="07l33fczr1x42sfxrsqq4q6r65sdflin6l8f5cgclnvx1858jdip"; depends=[]; }; - magick = derive2 { name="magick"; version="2.3"; sha256="182b4wahkq9q0scn99mql4vm9fp92nja0r5yizc4x9rjl492ahd8"; depends=[curl magrittr Rcpp]; }; - magickGUI = derive2 { name="magickGUI"; version="1.1.1"; sha256="0p2266vpy6snvn0a4winwv3qygz1gkhh3kxa8qmf7qdx34xv4qwd"; depends=[magick]; }; + magick = derive2 { name="magick"; version="2.4.0"; sha256="1y1p2blkg0h6061ay7mdwssxbswgrc25raffp6d8d9cqhdmsa72s"; depends=[curl magrittr Rcpp]; }; + magickGUI = derive2 { name="magickGUI"; version="1.2.0"; sha256="0mwfdh7jgi2apcdvrp7mmfr85i8qrx7n9dqymz09x0pl120kfy11"; depends=[magick]; }; magree = derive2 { name="magree"; version="1.0"; sha256="1qkd6p5g3aigcb0f4d08gc5323alvahzmazm3bzsmz1w033xd1hh"; depends=[]; }; magrittr = derive2 { name="magrittr"; version="1.5"; sha256="1s1ar6rag8m277qcqmdp02gn4awn9bdj9ax0r8s32i59mm1mki05"; depends=[]; }; + maic = derive2 { name="maic"; version="0.1.2"; sha256="0cvb3s67skzkqkh1hm007wvzgx9zg27bwwzw39sq4z0kyafjvg28"; depends=[Hmisc matrixStats weights]; }; mail = derive2 { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; }; mailR = derive2 { name="mailR"; version="0.4.1"; sha256="1bfh3fxdqx9f9y3fgklxyslpcvhr9gcj7wsamaxzgrcsaxm8fdlw"; depends=[R_utils rJava stringr]; }; + mailtoR = derive2 { name="mailtoR"; version="0.1.0"; sha256="0mnzblhy2vbxkf0k49bw1g08jw84s59zxbjrva2j2q347wzf4rgk"; depends=[glue htmltools]; }; majesticR = derive2 { name="majesticR"; version="0.1.1"; sha256="0x23p4js9cfnj8c33cp0fql5pvs4fn4frbbzpq85mxjhiifkxxpf"; depends=[jsonlite urltools]; }; makeFlow = derive2 { name="makeFlow"; version="1.0.2"; sha256="0r7a0klgx144rnks0fhjflnf8vfyyx2544n86nnxkp6cdvw0b4pw"; depends=[dplyr RColorBrewer]; }; makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; makedummies = derive2 { name="makedummies"; version="1.2.1"; sha256="062rvijhy2dybpgxzp44cg46bfyb8lp9yasv3mhskhf3yg717sqp"; depends=[tibble]; }; + maketools = derive2 { name="maketools"; version="1.0.0"; sha256="1yrqmn42hachq1zbagyqbhxn88fbnq5iix23pliinp0i50yrjgj5"; depends=[sys]; }; + malan = derive2 { name="malan"; version="1.0.2"; sha256="0qwf0r2gwpb93gzvyp8vaw7j6rhghr6nbrfp8xw876n5j5b9jhj3"; depends=[dplyr igraph magrittr Rcpp RcppArmadillo RcppProgress tibble tidygraph]; }; malani = derive2 { name="malani"; version="1.0"; sha256="1jps28gfkiysr356ackxf1my5xz6rpx3a2bv68pziy2614hrqbs9"; depends=[e1071]; }; - malariaAtlas = derive2 { name="malariaAtlas"; version="1.0.0"; sha256="0ibnsk8ibkcikkw8fiiyw2xiyy61bmrirlrv4l4ili4wna0h9w0q"; depends=[curl dplyr ggplot2 gridExtra httr raster rgdal rlang sp stringi tidyr xml2]; }; + malariaAtlas = derive2 { name="malariaAtlas"; version="1.0.1"; sha256="0k0406pn65ars4d6zlirfdd7z3rl2z82vsx5p97gmxnjjp6gjdpa"; depends=[curl dplyr ggplot2 gridExtra httr raster rgdal rlang sp stringi tidyr xml2]; }; mallet = derive2 { name="mallet"; version="1.0"; sha256="06rksf5nvxp4sizgya7h4sb6fgw3yz212a01dqmc9p5a5wqi76x0"; depends=[rJava]; }; managelocalrepo = derive2 { name="managelocalrepo"; version="0.1.5"; sha256="180b7ikas1kb7phm4l2z1d8wi45wi0qyz2c8rl8ml3f71b4mlzgc"; depends=[assertthat stringr]; }; + mand = derive2 { name="mand"; version="0.1"; sha256="0hrm7icc3akr98s4icn4yk4a05l547x2y7dyihzj4svwcqxgfh0r"; depends=[caret imager msma oro_dicom oro_nifti]; }; mandelbrot = derive2 { name="mandelbrot"; version="0.2.0"; sha256="04a288jj8h1a04r584a02wg9dm3c6zifhqwj964ybsvgb4m6g99s"; depends=[reshape2]; }; manet = derive2 { name="manet"; version="2.0"; sha256="1dnacgkdjmn7yiqk71qx5jgfipbpvqfdnrdd8wm0b9p8kgw4x7n4"; depends=[combinat igraph mclust MCMCpack]; }; - mangoTraining = derive2 { name="mangoTraining"; version="1.0-7"; sha256="0lw46j44jhdcyh079a7zjmxcnv5c6qsfachinlwv3ild1gwggr3p"; depends=[]; }; + mangoTraining = derive2 { name="mangoTraining"; version="1.1"; sha256="128ysvyqkddl035v3w2zm98y1ykly3pwjpyas7vhqi953by98hyk"; depends=[tibble]; }; manhattanly = derive2 { name="manhattanly"; version="0.2.0"; sha256="185fkakx4v35n4gmlpk2kfm2bm8p320q4khkw936m09zx3aqz398"; depends=[ggplot2 magrittr plotly]; }; manhplot = derive2 { name="manhplot"; version="1.1"; sha256="17yw10gpfp6bqmilb09v61jd2amz6cv1z38si4nqnhbvmac065qd"; depends=[ggplot2 ggrepel gridExtra reshape2]; }; manifestoR = derive2 { name="manifestoR"; version="1.4.0"; sha256="1rnqm9s91q6kff951402zxl3cmnl8j19ybg9vmcmcm7bjbv5w2l0"; depends=[base64enc dplyr DT functional htmltools htmlwidgets httr jsonlite magrittr NLP psych tibble tm zoo]; }; manipulate = derive2 { name="manipulate"; version="1.0.1"; sha256="1klknqdfppi5lf6zbda3r2aqzsghabcsaxmvd3vw3cy3aa984zky"; depends=[]; }; manipulateWidget = derive2 { name="manipulateWidget"; version="0.10.1"; sha256="1vi71sjh7z1a880wffk8qqw7iysvk42q78giqxmm2sqz2a912qlx"; depends=[base64enc codetools htmltools htmlwidgets knitr miniUI shiny webshot]; }; - manymodelr = derive2 { name="manymodelr"; version="0.2.4"; sha256="13d1lgz22wpvbn56m32w5m1w2gk2jz0p3m2130lmwain4nb9rsmk"; depends=[caret dplyr e1071 ggplot2 magrittr Metrics plyr purrr reshape2 tibble]; }; - maotai = derive2 { name="maotai"; version="0.1.5"; sha256="08cww0hh3ry3sjxx9wwnddjgqyzfxpikif3wyhfpqdwlrbsrnk4j"; depends=[cluster labdsv Matrix Rcpp RcppArmadillo RcppDist Rdpack RSpectra Rtsne shapes]; }; + manymodelr = derive2 { name="manymodelr"; version="0.3.2"; sha256="1z1ds6h7g3vq8jg1vlv4n7gkpy7bka0b2mzmr46nzjr71cffr8dv"; depends=[caret dplyr e1071 ggplot2 lme4 Metrics]; }; + maotai = derive2 { name="maotai"; version="0.1.6"; sha256="1rw2qx6p7wawwhznqrq195v76w381qg33rfhsm1wc5sazg8bzvly"; depends=[cluster labdsv Matrix nabor Rcpp RcppArmadillo RcppDist Rdpack RSpectra Rtsne shapes]; }; mapReasy = derive2 { name="mapReasy"; version="1.0"; sha256="13va0z967ckwxnnianki5aj66km0x6r37nj4mz9qd3b0bps4g2kj"; depends=[Hmisc rgdal sp]; }; mapStats = derive2 { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; }; mapcan = derive2 { name="mapcan"; version="0.0.1"; sha256="1a4135wc1h4nzcv6xq0bg75i744wyq8p7q0ix7y2x2gb6s35w46k"; depends=[dplyr ggplot2 magrittr]; }; mapdata = derive2 { name="mapdata"; version="2.3.0"; sha256="0xnxh73rgcq55zrw81a2bq8yd67bxc2rafp4shf6nyrqj04iip0y"; depends=[maps]; }; - mapdeck = derive2 { name="mapdeck"; version="0.3.2"; sha256="15xy8gdv7nwlqk61sfwa0m7miwyr776sqvhqn9x0jzm4r9y2cp4d"; depends=[BH colourvalues geojsonsf googlePolylines htmlwidgets jsonify magrittr rapidjsonr Rcpp sfheaders shiny spatialwidget]; }; + mapdeck = derive2 { name="mapdeck"; version="0.3.3"; sha256="0mkrqsc8jhand6d70gz9y17j43cs2dikdl2x2rv2sla353yyh8a8"; depends=[BH colourvalues geojsonsf googlePolylines htmlwidgets jsonify magrittr rapidjsonr Rcpp sfheaders shiny spatialwidget]; }; mapedit = derive2 { name="mapedit"; version="0.6.0"; sha256="1ix0sjsqb6646xyi73am9ic97plw9y9p4pl8mrkpzvqzm0pxdhxx"; depends=[dplyr htmltools htmlwidgets jsonlite leafem leaflet leaflet_extras leafpm mapview miniUI raster scales sf shiny sp]; }; mapfit = derive2 { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; }; mapi = derive2 { name="mapi"; version="1.0.1"; sha256="0qfwxrd0ya5amw7f96pfxf3f8m97s7vhaz62clqn083mw8ddaz2l"; depends=[data_table pbapply Rcpp sf]; }; - mapmisc = derive2 { name="mapmisc"; version="1.7.7"; sha256="07hnfn0fnydckniyhixrsw7m22hmvzksqxlwcw2i0jb7qq3h3vqa"; depends=[raster sp]; }; + mapmisc = derive2 { name="mapmisc"; version="1.7.9"; sha256="0dq360jdhbaq3i0vylvxcgrvw9pmp2k5as72lahyvl7v7bv4079d"; depends=[raster sp]; }; mapplots = derive2 { name="mapplots"; version="1.5.1"; sha256="18s2y66f8vi8g2r8a25zbgp2xm079r8v8qxv0w71h8krycs6vs9p"; depends=[]; }; mapproj = derive2 { name="mapproj"; version="1.2.7"; sha256="0nscsfq8md6ri9258xz57c3dj81wdl6kdwf4a9qcrwwbn20i427h"; depends=[maps]; }; - mapr = derive2 { name="mapr"; version="0.4.0"; sha256="169ah9v7cpw3hmaj6n575gi1zwazf4vh59n46zghb1x68nc2gqs0"; depends=[data_table ggplot2 gistr jsonlite leaflet RColorBrewer rworldmap sp spocc]; }; + mapr = derive2 { name="mapr"; version="0.5.0"; sha256="1dxvnkb4a2i5afqjjc94xdzc18znhdrgsj9a4wjsggrzwvy94215"; depends=[data_table ggplot2 gistr jsonlite leaflet maps RColorBrewer sp spocc]; }; maps = derive2 { name="maps"; version="3.3.0"; sha256="05i2ppl5z4p8rawgqmy3z4ia05fcblpq1vvrmrkgkkpdlhczx6hr"; depends=[]; }; mapsFinland = derive2 { name="mapsFinland"; version="0.1.1"; sha256="0kx9r28lvc6bbl478i9gyy58kbp5hi7akysyld87fxk5x0601j19"; depends=[]; }; mapsRinteractive = derive2 { name="mapsRinteractive"; version="1.0.0"; sha256="0lpmizhaan7zp201wjaq544wadizwpswch7sn6m3sjwn8rswg6av"; depends=[gstat raster rgdal rgeos sp]; }; - mapsapi = derive2 { name="mapsapi"; version="0.4.5"; sha256="0qgdlwgc3rmkpdam4mk7jbs79l5mnzjxz5a763icvr1clgna6xn2"; depends=[bitops magrittr RgoogleMaps sf stars xml2]; }; - maptools = derive2 { name="maptools"; version="0.9-9"; sha256="0v4llkxk8qs61vq4ykvaim4k23aagdaz0p62ns7zfq02sln3pfk9"; depends=[foreign lattice sp]; }; + mapsapi = derive2 { name="mapsapi"; version="0.4.6"; sha256="0s66ws50jp5fgl3c0lgilnzqm4chyn73wm7c29873bxr2p40gfr9"; depends=[bitops magrittr RgoogleMaps sf stars xml2]; }; + maptools = derive2 { name="maptools"; version="1.0-1"; sha256="0fs1y3cbymcq4f76wd27h5a7ihdmxii3ca8x29x32xgxhmasni4l"; depends=[foreign lattice sp]; }; + maptpx = derive2 { name="maptpx"; version="1.9-7"; sha256="0f85i3vwr5rvz261z6j7x15gsahxrq4qqddfb0qyhypgihvwh857"; depends=[slam]; }; maptree = derive2 { name="maptree"; version="1.4-7"; sha256="1k7v84wvy6wz6g0dyiwvd3lvf78rlfidk60ll4fz7chvr2nrqdp4"; depends=[cluster rpart]; }; - mapview = derive2 { name="mapview"; version="2.7.8"; sha256="1hj9yx85jskmh6qm5ljzjlkxcwjffvswlgi453kn2rp7xzxbyv9b"; depends=[base64enc htmltools htmlwidgets lattice leafem leaflet leafpop png raster satellite scales sf sp viridisLite webshot]; }; + mapview = derive2 { name="mapview"; version="2.9.0"; sha256="145n1shc8bjvm2awvnxd8884mi5bxjqymlkvz1vv3gkwwssv430p"; depends=[base64enc htmltools htmlwidgets lattice leafem leaflet leafpop png raster satellite scales sf sp webshot]; }; mar1s = derive2 { name="mar1s"; version="2.1.1"; sha256="1ljkvgxrramfx1rnp2rg6516mjxaa6s96amrnmqymnyjz7wlf37l"; depends=[cmrutils fda zoo]; }; march = derive2 { name="march"; version="3.1"; sha256="1y3ndnkxrqxavp7b5dwhn1mijhhn06k5b6iickzjr4bfmpfnk340"; depends=[]; }; marcher = derive2 { name="marcher"; version="0.0-2"; sha256="0hcxbfrwniih4kvx5sxhlffz1pc87kf52v8hvaf193rhhdykis5q"; depends=[magrittr Matrix minpack_lm mvtnorm numDeriv plyr RColorBrewer scales zoo]; }; @@ -10069,15 +10443,17 @@ in with self; { marked = derive2 { name="marked"; version="1.2.6"; sha256="0k367sjyac1w894rndz5m0drmbd56nzyx5mr7mvhsqzq3gnv4dw5"; depends=[bookdown coda data_table expm kableExtra knitr lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; }; marketr = derive2 { name="marketr"; version="0.0.1"; sha256="0pchyfhim18m88r9m9dhihj89isvjwgmka9bdi64n0hnmv0qv8ds"; depends=[dplyr magrittr rlang tibble tidyr]; }; markmyassignment = derive2 { name="markmyassignment"; version="0.8.2"; sha256="1jrx72k3glwv5nci3h3qbqbs0x9mqld92v4irw2sfjzcmb7qyma3"; depends=[checkmate codetools httr lazyeval rlang testthat yaml]; }; - markophylo = derive2 { name="markophylo"; version="1.0.7"; sha256="09rg5rwm0dm881fpm9yzygd6d3dyrxjsrvl0yhfpkzbpdihfympn"; depends=[ape numDeriv phangorn Rcpp RcppArmadillo]; }; - markovchain = derive2 { name="markovchain"; version="0.8.4"; sha256="154prv8bwx9a9956l3vkph60j8cg49q78q217qfqh2j2v7h7rfb9"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; + markophylo = derive2 { name="markophylo"; version="1.0.8"; sha256="05hfykjzx4wf2p1d6dvyx5lizfxmq3zprvnfg74r7l1izp7wpl38"; depends=[ape numDeriv phangorn Rcpp RcppArmadillo]; }; + markovchain = derive2 { name="markovchain"; version="0.8.5"; sha256="1bsvp2cpqc70rlxnpjk938yscl8hn1phpsvc8nc9g9166x4mqy17"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; marl = derive2 { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; }; - marmap = derive2 { name="marmap"; version="1.0.3"; sha256="0hjy58kk2kg7v2nq7kfw5rdcrpfhikwr30lz71pfgis34833i7yy"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; + marmap = derive2 { name="marmap"; version="1.0.4"; sha256="1yhnh311wzy6klyds6l0rldk6kw89rylxnwqrj5y6bpws9sac0za"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; marqLevAlg = derive2 { name="marqLevAlg"; version="2.0.2"; sha256="0q3whfhi17qa8dfd5hjyqxc7a7p8hdfkkmvccdigfbqvksf24fxs"; depends=[doParallel foreach]; }; mase = derive2 { name="mase"; version="0.1.2"; sha256="1023xvv6yngbc183hb13057spjildywqd0jw2w9jway3zv4dbw9v"; depends=[boot dplyr foreach glmnet magrittr Matrix Rdpack rpms survey]; }; - mason = derive2 { name="mason"; version="0.2.6"; sha256="01ppc7f18kf4xv4lrhib0cfm85v658grmxpny3h3kdb4pi4rbspy"; depends=[broom dplyr lazyeval magrittr tidyr]; }; + mashr = derive2 { name="mashr"; version="0.2.38"; sha256="1w1ipkwixq8mr25v7w8vdyi6rwbkgsd0a69w05l0r6bms7dviki8"; depends=[abind ashr assertthat mvtnorm plyr Rcpp RcppArmadillo RcppGSL rmeta]; }; + mason = derive2 { name="mason"; version="0.3.0"; sha256="1x5wiagb1sy5gkp0xkbr1jzhrjg1c2bqdh4hy6igwcnws2cbhxyr"; depends=[broom dplyr magrittr purrr rlang tibble tidyr tidyselect]; }; matR = derive2 { name="matR"; version="0.9.1"; sha256="1qw2vqmpq7gc3dmr9r000ccjj7xa0h82waxnvryz3l17ggryyjjm"; depends=[BIOM_utils MGRASTer]; }; matahari = derive2 { name="matahari"; version="0.1.3"; sha256="03mhn4qh1vcz2hr0mxp6gijwgrzvbpfb8dq7lqhchbk5gq5g3fnh"; depends=[clipr jsonlite purrr readr rlang rstudioapi tibble]; }; + match2C = derive2 { name="match2C"; version="0.1.0"; sha256="04sbsnbp2qmklfify7a2bdrx7y8r836qhwvklxi4nns5ivj51hqv"; depends=[mvnfast rcbalance Rcpp]; }; matchMulti = derive2 { name="matchMulti"; version="1.1.7"; sha256="0k5psmjzcyr7pm603vni7w2hvslck05r81cngm26pql2prdrv5yk"; depends=[coin Hmisc MASS mvtnorm plyr rcbsubset weights]; }; matchbook = derive2 { name="matchbook"; version="1.0.7"; sha256="0xfqg8z2zkn215kqmjjkqdwrgsk7cn4jdpxfgd6razhcbvflg48j"; depends=[]; }; matchingMarkets = derive2 { name="matchingMarkets"; version="1.0-2"; sha256="1jj5hzxiivqinkpddmkqdxgi83jm6blann9wgv4g8prn3lvp0i85"; depends=[lattice lpSolve partitions Rcpp RcppArmadillo RcppProgress rJava]; }; @@ -10086,11 +10462,13 @@ in with self; { matconv = derive2 { name="matconv"; version="0.4.0"; sha256="0kl0647m45mrk13fyr0mkx1x9v3im66ciky8k8nmy4ahkffyasi4"; depends=[]; }; mateable = derive2 { name="mateable"; version="0.3.1"; sha256="1ka9xxicibpfg6k3njq5f5576jwj734r1mb46a2cmiyq676ks7pp"; depends=[FNN Rcpp sn]; }; mathgraph = derive2 { name="mathgraph"; version="0.9-14"; sha256="11wcnjligjc0m0ibi7v5f9w4j2g0fmw33za8407d9fqdb0i5pf60"; depends=[]; }; - mathpix = derive2 { name="mathpix"; version="0.3.0"; sha256="1a49yda4r9a6pbs641ch2kmxg3pf8zxfrfi30r19z6g15jfgdrvf"; depends=[base64enc httr magick purrr rstudioapi texPreview]; }; + mathjaxr = derive2 { name="mathjaxr"; version="1.0-1"; sha256="0j1124f7sb6r7fjfhrlara2402qpa2pf1m21amnpqz0c9l63fg8d"; depends=[]; }; + mathpix = derive2 { name="mathpix"; version="0.4.0"; sha256="0wwagf8v7awgiyi8vrfay5m2pbl1czn62g5bkg037wwy0c68n8va"; depends=[base64enc httr magick purrr rstudioapi texPreview]; }; matie = derive2 { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[cba dfoptim gplots igraph mvtnorm seriation]; }; matlab = derive2 { name="matlab"; version="1.0.2"; sha256="0m21k2vzbc5d3c93p2hk4208xyd2av2slg55q5j1ibjidiryqgd2"; depends=[]; }; matlabr = derive2 { name="matlabr"; version="1.5.2"; sha256="1ba6cajnzldb1gmn7rf0b198h6mdh58r3frm0z0cmvbinspwz3x7"; depends=[stringr]; }; matlib = derive2 { name="matlib"; version="0.9.3"; sha256="09fndv9dpc48s1i263amhgk7bjhz0wzksbhkzkl392v85r84bj6x"; depends=[car MASS rgl xtable]; }; + matman = derive2 { name="matman"; version="1.1.0"; sha256="0ky10i2qbsd6vqsxrcbdimpwbn1yjz56lxmpsa48450r2dbmijwm"; depends=[data_table dplyr DT forecast ISOweek plotly shiny shinydashboard shinyWidgets tidyr tidyverse]; }; matpow = derive2 { name="matpow"; version="0.1.1"; sha256="1a6q21ba16qfdpykmjwgmrb1kkvvyx48qg8cbgpdmch0vhibcgcp"; depends=[]; }; matricks = derive2 { name="matricks"; version="0.8.2"; sha256="0ik61jxd4hpw149dbbmis3wsfsim60mw9d0qjwh047qfg6sm1vsc"; depends=[ggplot2 Rcpp reshape2 rlang]; }; matrixLaplacian = derive2 { name="matrixLaplacian"; version="1.0"; sha256="1ixqdv3sz3sc79wn3vqhlq79j7x7cvl878m5hgvbcg6klfvlmmci"; depends=[scatterplot3d]; }; @@ -10098,15 +10476,14 @@ in with self; { matrixProfile = derive2 { name="matrixProfile"; version="0.5.0"; sha256="0nd54k878xf7hzwxawh03c3na4jfvb68afarkwrmmffjlp3i8a9g"; depends=[fftw signal TTR zoo]; }; matrixStats = derive2 { name="matrixStats"; version="0.56.0"; sha256="09qgfv9x32x6ncgf19iy7yjp26fwy6p5wm8spc2xzfc0qhylmqrr"; depends=[]; }; matrixStrucTest = derive2 { name="matrixStrucTest"; version="1.0.0"; sha256="06la9xmpi1viyjml4m1akbna3lwkz5lnq95v1nnf73i9zpfwz03k"; depends=[]; }; - matrixTests = derive2 { name="matrixTests"; version="0.1.8"; sha256="18f0nklhq5xsh8dwqqz2kdq5csyxc8jdx3r0d1hcm27l3l48h56s"; depends=[matrixStats]; }; + matrixTests = derive2 { name="matrixTests"; version="0.1.9"; sha256="128h8krc7n6lrh6njyj650ma5gr549p8cyps6dxij6bm0p3n7r62"; depends=[matrixStats]; }; matrixcalc = derive2 { name="matrixcalc"; version="1.0-3"; sha256="1c4w9dhi5w98qj1wwh9bbpnfk39rhiwjbanalr8bi5nmxkpcmrhp"; depends=[]; }; - matrixpls = derive2 { name="matrixpls"; version="1.0.9"; sha256="13wsd0kbn77mjd5rkfdv9di8pxg898adrgdpqcyridvikjhqlh0j"; depends=[assertive lavaan MASS matrixcalc psych]; }; matrixsampling = derive2 { name="matrixsampling"; version="2.0.0"; sha256="05dbn7rj07jx1hj7i6k3akf11hysxg6v32kav9fvsqmiy2zkippa"; depends=[keep]; }; - matsbyname = derive2 { name="matsbyname"; version="0.4.13"; sha256="1sx6nqqndfs39dkim9c5gqxl4afacq2wkcnrj95byl5a24s3sw5d"; depends=[dplyr Hmisc magrittr purrr rlang tibble]; }; + matsbyname = derive2 { name="matsbyname"; version="0.4.15"; sha256="0hkzfagmrws7vz0sn0fn0a14vmlpfr77clhrqms9cbijx7da3wz3"; depends=[assertthat dplyr Hmisc magrittr purrr rlang stringi tibble]; }; matsindf = derive2 { name="matsindf"; version="0.3.4"; sha256="0r8hs53c4xv7lldz8mzh3hy5jq64c3cza9yifjjzpwvlw42y631l"; depends=[dplyr magrittr matsbyname purrr rlang rlist tibble tidyr]; }; mau = derive2 { name="mau"; version="0.1.2"; sha256="1wgiai8f1kbjh9hfwv4m0kavd44ib5xb33p8m16zpawnw14m7sj5"; depends=[data_table ggplot2 gtools igraph RColorBrewer Rdpack stringr]; }; - mauricer = derive2 { name="mauricer"; version="2.0.5"; sha256="01x1cigwr95hzyz1pm9w5xi2j9z4zf54p6bwhn0y865gln80wvnz"; depends=[beastier stringr]; }; - maxLik = derive2 { name="maxLik"; version="1.3-8"; sha256="1rfzd2n7ak69pbnnzbvd0c4kk9h812sq1f17hamnqx77pw84sh1k"; depends=[miscTools sandwich]; }; + mauricer = derive2 { name="mauricer"; version="2.1"; sha256="1llqcz6iimb96cfkpjkwwdplfv6s36c634rczxpzrid6vizls0sh"; depends=[beastier curl stringr]; }; + maxLik = derive2 { name="maxLik"; version="1.4-0"; sha256="0glbd19icibl24pqgn1247s8gqbgb72bppvs9k7r8z2hcqws0005"; depends=[miscTools sandwich]; }; maxTPR = derive2 { name="maxTPR"; version="0.1.0"; sha256="13x5rz0mfha5pzahkk4x67ncz9v77sa690cyl6wigwsldsrvzr3h"; depends=[aucm Rsolnp]; }; maxadjAUC = derive2 { name="maxadjAUC"; version="0.1.0"; sha256="04zdaqmavhhrj63s2k5pqncvlzbfnxan7r0fagfka9dypwwcl5qm"; depends=[aucm Hmisc Rsolnp survival]; }; maximin = derive2 { name="maximin"; version="1.0-3"; sha256="1wfhpgk149aw6gkdlr8g29icj0l0xa8fczxkz4hbdr91dqmnxvp3"; depends=[plgp]; }; @@ -10120,21 +10497,22 @@ in with self; { mazeinda = derive2 { name="mazeinda"; version="0.0.1"; sha256="0ns4ib73y4fghf7p1wg0a05js4mqr66dpp49p1h039pqrb0f1vwd"; depends=[foreach]; }; mbbefd = derive2 { name="mbbefd"; version="0.8.8.5"; sha256="1bnbavhii2wm9944l4j5x21y9b3kp0sdshz32r1k7cy1y569zd6r"; depends=[actuar alabama fitdistrplus gsl MASS Rcpp]; }; mbclusterwise = derive2 { name="mbclusterwise"; version="1.0"; sha256="1ilqaxcxf1k3ck910s0xqwnp88w8ag5rn1dpvaa1i7jlcldsbnhp"; depends=[ade4 doParallel foreach kknn]; }; - mbend = derive2 { name="mbend"; version="1.2.5"; sha256="0p9clxfrrj0j58splarb8ljvini1gi7mmn2fqay7w4hc5l8rhh6d"; depends=[]; }; + mbend = derive2 { name="mbend"; version="1.3.0"; sha256="011csf2zigv0778d1mkwq13dayj4zkpnlsy2a0s8n71hbyhra0v6"; depends=[]; }; mbest = derive2 { name="mbest"; version="0.6"; sha256="1x0f7y5hj6a35wq1xn6g7jyjn9c4zryahwlf07qrypgrcnj2m8vx"; depends=[abind bigmemory foreach lme4 logging nlme]; }; mbir = derive2 { name="mbir"; version="1.3.5"; sha256="10sd5gk2k94cmi49nbpywqvh9bxj9q3psa3d00zmw1a7d6c0jjpd"; depends=[effsize psych]; }; mblm = derive2 { name="mblm"; version="0.12.1"; sha256="1fipb3bryaimr30lcxsxrn0ymv24z39swca7s4z7p9xcfg3ban1b"; depends=[]; }; - mboost = derive2 { name="mboost"; version="2.9-2"; sha256="1ajlspdkh7zj9jhjhz7zsllv3dzwpx272ksrk91gzidda4hbmiil"; depends=[lattice Matrix nnls partykit quadprog stabs survival]; }; + mboost = derive2 { name="mboost"; version="2.9-3"; sha256="1qp5c43kc0939sss5w3hhn794lbi69wgfsa31sq4c8vzh35pjqmf"; depends=[lattice Matrix nnls partykit quadprog stabs survival]; }; mboxr = derive2 { name="mboxr"; version="0.2.0"; sha256="1d11fpz17k65dzw9sjc7zfs1jpajzrh2pvr2s435p83g3mpf40vz"; depends=[dplyr lubridate magrittr purrr reticulate stringr tibble tidyr]; }; mbrglm = derive2 { name="mbrglm"; version="0.0.1"; sha256="0yxq1xk8qy5hpiqqldyrs78lp4ggdp5lj2lmh8rqq1xvsfr6nrh4"; depends=[enrichwith nleqslv]; }; mbsts = derive2 { name="mbsts"; version="1.0"; sha256="0wkglh1g0kdlgw4afqxvwb26difnqhf6g5jsbf8y39mpipxla365"; depends=[KFAS MASS Matrix MCMCpack pscl]; }; - mc_heterogeneity = derive2 { name="mc.heterogeneity"; version="0.1.0"; sha256="1jrj7kkykhw9qj71cfjrn5gbm3qyrbdcc4cj3mfz62wlvny18233"; depends=[metafor]; }; + mc_heterogeneity = derive2 { name="mc.heterogeneity"; version="0.1.1"; sha256="076naz0p2kqn9dlbzllcqv7rki3vxybzhpq8fsw9wslsznmm9r1w"; depends=[boot_heterogeneity metafor]; }; mc2d = derive2 { name="mc2d"; version="0.1-18"; sha256="1ljw8ms661bsdqbfpjvvrif9n0c2i6lzxyqj4rxhxsp3dj18w3g3"; depends=[mvtnorm]; }; mcBFtest = derive2 { name="mcBFtest"; version="0.1.0"; sha256="1fmn9pzbvk508ljspksppqxdvggx5bvipgs54nz9605y6p8zzmi5"; depends=[MASS]; }; mcGlobaloptim = derive2 { name="mcGlobaloptim"; version="0.1"; sha256="1p8841y9a4yq51prv6iirgw9ln8jznx8nk547sc5xlznksjy1g9n"; depends=[randtoolbox snow]; }; mcMST = derive2 { name="mcMST"; version="1.0.1"; sha256="18ka76g9pgpycaw0hl8vxpabd8584q1l5d3xmrzy1zwincsg7vgs"; depends=[BBmisc checkmate ecr ggplot2 gtools lhs parallelMap reshape2 vegan]; }; mcPAFit = derive2 { name="mcPAFit"; version="0.1.4"; sha256="1h5kiry8bvdrgyqf7cqsag0b7rscwc7phayzf6h4css1667bvm0g"; depends=[PAFit RColorBrewer Rcpp]; }; mcStats = derive2 { name="mcStats"; version="0.1.2"; sha256="1r8dxdfcvznl2968xr6fbany1rh7wq5z1p7fhdf5g4b5l28j8pf9"; depends=[dplyr ggplot2 ggthemes gridExtra magrittr rlang tidyr]; }; + mcb = derive2 { name="mcb"; version="0.1.15"; sha256="0k986m2vyvfqxw3jmlyvf6r5bq68y92fymy03lffq5lmiqhypixj"; depends=[ggplot2 glmnet lars leaps MASS ncvreg reshape2 smoothmest]; }; mcbiopi = derive2 { name="mcbiopi"; version="1.1.6"; sha256="1caw2sy15hw2zw0bdynwnsa7hn4rly34hlxp06nwm5lssz8l2597"; depends=[]; }; mcc = derive2 { name="mcc"; version="1.0"; sha256="0p661a870bvh3xhcahqqq85azn9rjl3vacjy96jsdn86irj4s0vi"; depends=[]; }; mcca = derive2 { name="mcca"; version="0.7.0"; sha256="01nm0plgkik241qhd06v1vs84lf7agc0vkxa27cpr5qlfl4cm4zb"; depends=[caret e1071 MASS nnet pROC rgl rpart]; }; @@ -10143,64 +10521,68 @@ in with self; { mccmeiv = derive2 { name="mccmeiv"; version="2.1"; sha256="1lkghvvwxvg474p37h1mpbackr5qmy05qkx8yiq4x066wrfq1w1i"; depends=[MASS numDeriv survival]; }; mccr = derive2 { name="mccr"; version="0.4.4"; sha256="1scqds1yx317qmjappy2h1m564dcmsqqfpdm8pm3plalag16xrhj"; depends=[]; }; mcemGLM = derive2 { name="mcemGLM"; version="1.1.1"; sha256="0p6z32c69ik8wjjn50vzjmr4plsfbxr2p0hr50wknkwwb7i20hp6"; depends=[Rcpp RcppArmadillo trust]; }; - mcen = derive2 { name="mcen"; version="1.0"; sha256="0dgic137n3qvxljj3f7j3kq3x2rkblxzg55hjbknspwp0i7i4lx8"; depends=[faraway flexclust glmnet Matrix]; }; + mcen = derive2 { name="mcen"; version="1.2"; sha256="1j0fy0ccbx85znvsxpd72pcgk3qg6r1ngpjjgr04mg9bwlfzpxm2"; depends=[faraway flexclust glmnet Matrix]; }; mcga = derive2 { name="mcga"; version="3.0.3"; sha256="109m01mab5awjf8zjzwl9j7hzac15dyq3x6zba9hsy5i02k5d5w4"; depends=[GA Rcpp]; }; mcgfa = derive2 { name="mcgfa"; version="2.2.1"; sha256="19z5008274pwlwv47imixnfd4nxwnrhdhsq2m3grjzndxp41i4xz"; depends=[]; }; mcgibbsit = derive2 { name="mcgibbsit"; version="1.1.0"; sha256="09ydcbjz3abmh46966v01dh26fy79dfklk3zjf262zp3c62ld9yf"; depends=[coda]; }; + mcglm = derive2 { name="mcglm"; version="0.6.0"; sha256="0p06bibckkq7aynhp8livsyvvy3abwswwvwl5ps4fxqsgncfng5f"; depends=[assertthat Matrix Rcpp RcppArmadillo]; }; mcheatmaps = derive2 { name="mcheatmaps"; version="1.0.0"; sha256="1gglm32xpmim38m7fziczgqfbpcq2899lxardsrzg6j1vhmf765y"; depends=[gridBase]; }; mclcar = derive2 { name="mclcar"; version="0.1-9"; sha256="0bwnivmajsrvmwskhk44qhz4nnc0irxq83g0kzbj4wshhivnwryp"; depends=[fields maxLik nleqslv rsm spam spdep]; }; mcll = derive2 { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; }; - mclogit = derive2 { name="mclogit"; version="0.6.1"; sha256="1flq3g5jbp8nnx066wz35bg8wzlnnp9jp731w87vba483amakcds"; depends=[Matrix memisc]; }; + mclogit = derive2 { name="mclogit"; version="0.8.5.1"; sha256="19lhymixycm1xyj7k9ywswvvsl6pbqyhrzjsayrcjkcsdv58cf44"; depends=[Matrix memisc]; }; mclust = derive2 { name="mclust"; version="5.4.6"; sha256="1z46qask09x3xpv0wzvhn09218vwyrip4f5jrhnx96khpwvczzyl"; depends=[]; }; mclustcomp = derive2 { name="mclustcomp"; version="0.3.1"; sha256="0jdfdmgd46w7b38nbpd0lj9vqzi2nnf8fv0crj08lfin5ng7jvaa"; depends=[Rcpp RcppArmadillo Rdpack]; }; mcmc = derive2 { name="mcmc"; version="0.9-7"; sha256="0q42m8ab7b6bxhns494ksjdss5f3c5m2jjfdlfj6fk1nz7ax7i5p"; depends=[]; }; - mcmcabn = derive2 { name="mcmcabn"; version="0.3"; sha256="0p4g7bnaq87kgfhsc3a8wdifngs4lb5il5wy9im81gz30ji9gbn7"; depends=[abn coda cowplot ggplot2 ggpubr gRbase]; }; - mcmcderive = derive2 { name="mcmcderive"; version="0.0.1"; sha256="12asjw8rnnr7249fb7z7mp5w8y5vb0zig93jzsf77gghhfjmp4dl"; depends=[abind checkr err mcmcr purrr]; }; + mcmcOutput = derive2 { name="mcmcOutput"; version="0.1.1"; sha256="0nw33xb7x695g8i91hfj2apgywbyzf2k587drzridqnfmbm26pni"; depends=[coda HDInterval MASS]; }; + mcmcderive = derive2 { name="mcmcderive"; version="0.1.0"; sha256="1q26fnkm8ysfgbn1f0i2qajm1jrfslplx6jdg76bdc83iqwblpd6"; depends=[abind chk extras mcmcr nlist purrr term universals]; }; mcmcplots = derive2 { name="mcmcplots"; version="0.4.3"; sha256="0187z79gmvcrwqybxh3ckhcrqi0nqhvcvlczgxfkpq95y5czprdq"; depends=[coda colorspace denstrip sfsmisc]; }; - mcmcr = derive2 { name="mcmcr"; version="0.2.0"; sha256="0jiyr0ncwhkgvkq4jb27iv1pxra9jbrjkv57lla71afr6glisqp2"; depends=[abind checkr coda err]; }; + mcmcr = derive2 { name="mcmcr"; version="0.3.0"; sha256="1jk1hdrbxfh0dqhvjxm8ml6mxrdg1qjhm6b3q745qnn03psp4qgy"; depends=[abind chk coda extras lifecycle nlist purrr term universals]; }; mcmcse = derive2 { name="mcmcse"; version="1.4-1"; sha256="05sxz2bjb1y389vrmykcn6hwhgpykzpnh94aq34mbpqdsrb1y63b"; depends=[ellipse Rcpp RcppArmadillo]; }; mco = derive2 { name="mco"; version="1.0-15.1"; sha256="14y10zprpiflqsv5c979fsc2brgxay69kcwm7y7s3gziq74fn4rw"; depends=[]; }; mcompanion = derive2 { name="mcompanion"; version="0.5-3"; sha256="0051agyzbhrsxi9wpfpqcq98h7y25627s2czf30qxcq80m7xbhj0"; depends=[gbutils MASS Matrix Rdpack]; }; - mcp = derive2 { name="mcp"; version="0.2.0"; sha256="19bckg1wzv6k2j57s38rpjqrimj34lzaa3f0izxz36sahavyy2vj"; depends=[bayesplot coda dplyr future future_apply ggplot2 loo magrittr patchwork purrr rjags rlang stringr tibble tidybayes tidyr tidyselect]; }; + mcp = derive2 { name="mcp"; version="0.3.0"; sha256="1dgdhspbqc6w7rcplryjy9jjzdpm480rwngn6ri7kjl8bk70hll2"; depends=[bayesplot coda dplyr future future_apply ggplot2 loo magrittr patchwork rjags rlang stringr tibble tidybayes tidyr tidyselect]; }; mcparallelDo = derive2 { name="mcparallelDo"; version="1.1.0"; sha256="1ivh0d4f7ks6xwcjywk62h1zhr7h5bbhzpisky7973wi4g8vipbn"; depends=[checkmate R_utils R6]; }; - mcprofile = derive2 { name="mcprofile"; version="0.2-3"; sha256="0rakaa1p6z0p4jl4df357vi58wzph81ik6plc8zzl370r8mj1y8q"; depends=[ggplot2 mvtnorm quadprog]; }; + mcprofile = derive2 { name="mcprofile"; version="1.0-0"; sha256="169dhwspwfx864l312vagmrikknlhwbc55g31a7764aclc4sgd26"; depends=[ggplot2 mvtnorm quadprog]; }; mcr = derive2 { name="mcr"; version="1.2.1"; sha256="0237w41xichd418ax9xviq4wxbcc6c0cgr5gvzkca67nnqgc4jaz"; depends=[]; }; mcsm = derive2 { name="mcsm"; version="1.0"; sha256="13sx7s3ywis5n4a70ld2szld9fb8jkfsc82dy6iskhy17vy8pml0"; depends=[coda MASS]; }; - mctest = derive2 { name="mctest"; version="1.2.5"; sha256="1brqa8rvb5jvwmjz4wms7rhzv9xpvqydzkjm46ckz9fsiwrkq5mf"; depends=[]; }; + mctest = derive2 { name="mctest"; version="1.3.1"; sha256="1d248r9ifwl1xhvka6z69l943rvbq7s7ag6vqp9lljkcybvg75f2"; depends=[]; }; mcunit = derive2 { name="mcunit"; version="0.3.1"; sha256="12zlm14gcfid7h9szrggwmhy54d0wk57r8w8l3p3x3yp49144v67"; depends=[Rdpack rlang simctest testthat]; }; + mcvis = derive2 { name="mcvis"; version="1.0.4"; sha256="0r95pnl3ar7w046wyrc39mr8mf6z5rnzqqfhgz2cpn3bgli0v9sj"; depends=[assertthat dplyr ggplot2 igraph magrittr psych purrr reshape2 rlang shiny]; }; md = derive2 { name="md"; version="1.0.4"; sha256="13z8f3p84kivk6j58fb1qpzrmml41mq9pgv9nv2gvxrhyhanzi46"; depends=[]; }; md_log = derive2 { name="md.log"; version="0.1.1"; sha256="0ix5nz38xzlhrga40hfhlfss938mrfbni2wysvz2qbpm59qxrhg0"; depends=[futile_logger]; }; - mda = derive2 { name="mda"; version="0.4-10"; sha256="19g6kn6g0shidrjfffklbmzc5w7mcimrxhagx4nmpslg59ibqdkh"; depends=[class]; }; - mdapack = derive2 { name="mdapack"; version="0.0.1"; sha256="1lz620nb51ih79djlma2hnasjr499dqkbvdn077n9pq14912z8q0"; depends=[covr curl devtools ggplot2 gh git2r httr knitr openssl pkgbuild reshape2 rlang rmarkdown roxygen2 spelling testthat]; }; - mdatools = derive2 { name="mdatools"; version="0.10.3"; sha256="0xpwysdqyimcxhkmkwq2pwhsv23i4nhfjwsdjrfywnjghw90a286"; depends=[]; }; - mde = derive2 { name="mde"; version="0.1.0"; sha256="129h28fhnfl4b0sm8q4ivaw0h5jhkglnkg8dzsvnis1gg2vn46hw"; depends=[dplyr magrittr purrr]; }; + mda = derive2 { name="mda"; version="0.5-2"; sha256="1hq0zhhz9klmp4zcr1w8hyn7s1h9kfg57d2l2mfm7psx459j0krl"; depends=[class]; }; + mdapack = derive2 { name="mdapack"; version="0.0.2"; sha256="1dfcjh8yax06m890ql0kc2rn539z4xbhw7bq9a8cbrm7jnkq03iq"; depends=[covr curl devtools FactoMineR ggplot2 gh git2r httr knitr mice openssl pkgbuild reshape2 rlang rmarkdown roxygen2 spelling testthat VIM]; }; + mdatools = derive2 { name="mdatools"; version="0.11.1"; sha256="1wp2rpfh11zlxq06yb3n6p5ig6arw8iladb08qnv472ddza14707"; depends=[Matrix]; }; + mde = derive2 { name="mde"; version="0.2.1"; sha256="0d28nhj36v6v40ylg575cjw5qqizfn9ch1yc4hffd6gzk35q441q"; depends=[dplyr tidyr]; }; mded = derive2 { name="mded"; version="0.1-2"; sha256="1j8fcz5yc70p9qd9l010xj1b625scdps8z1pqh75b45p2hiqbhlc"; depends=[]; }; mdendro = derive2 { name="mdendro"; version="1.0.1"; sha256="0pk7b7zn9afc947parkj1qa4d85gq16lalg07fjfripxjnmvjahw"; depends=[rJava]; }; mdftracks = derive2 { name="mdftracks"; version="0.2.0"; sha256="0l8dc6ljrhbm8jwadaa3xkf6nx90vyiig15p7rryswczz9hw5ga6"; depends=[hellno]; }; mdhglm = derive2 { name="mdhglm"; version="1.8"; sha256="1myky8d2ilwdliqrzd2i5qvja82iz7w6qbigl7h4znpk8pdgrjb3"; depends=[boot Matrix mvtnorm]; }; mdir_logrank = derive2 { name="mdir.logrank"; version="0.0.4"; sha256="0bhsr005dq9v85sjm2g9xlpksxwzsmsk14g0q5v3hkjvm5wk6xmv"; depends=[MASS]; }; - mdmb = derive2 { name="mdmb"; version="1.3-18"; sha256="0jvwwdblky080j8cwfjna2d11z7hr672cdw9bkjz7ngd44blyp8x"; depends=[CDM coda miceadds Rcpp RcppArmadillo sirt]; }; + mdmb = derive2 { name="mdmb"; version="1.4-12"; sha256="1ll3yjvdkrjz4jzp34cmsq18lnki4df50cd68wlrbygmnjgjmq35"; depends=[CDM coda miceadds Rcpp RcppArmadillo sirt]; }; mdpeer = derive2 { name="mdpeer"; version="1.0.1"; sha256="1vsqhah8h47s8k687fwa352549mdz16mwk1g7rcmhx75c2k85w2q"; depends=[boot ggplot2 glmnet magic nlme nloptr psych reshape2 rootSolve]; }; - mds = derive2 { name="mds"; version="0.3.1"; sha256="1zqd595c06b9mdy7iczx41p1xdm140161chmlpsj82mphjjinh88"; depends=[lubridate parsedate]; }; - mdsOpt = derive2 { name="mdsOpt"; version="0.4-3"; sha256="0chk95n8gvj8jxvqq3bkdsw3hjaizcqd0x2lk32rkaq52lp3l9d8"; depends=[animation clusterSim plotrix smacof smds spdep symbolicDA]; }; + mds = derive2 { name="mds"; version="0.3.2"; sha256="1r4cz49h1sp1kl1sjqapadhd49lpdnr48w9xbwgpfh2ghwxfcval"; depends=[lubridate parsedate]; }; + mdsOpt = derive2 { name="mdsOpt"; version="0.5-1"; sha256="01gcrlmcgi1phz4952bkbf2xzd2j06lq1d6cn3nf3jz9sy5xy7f8"; depends=[animation clusterSim plotrix smacof smds spdep symbolicDA]; }; mdscore = derive2 { name="mdscore"; version="0.1-3"; sha256="10cl5r6kd9chdik5v0q91x40xpw2cjvvyi220z4bvngpb0989x8j"; depends=[MASS]; }; mdsdt = derive2 { name="mdsdt"; version="1.2"; sha256="0nbzc54jac4wmfyrs821ycxh749cb1zfxcws0nbpk35rydqkc627"; depends=[ellipse mnormt polycor]; }; mdsr = derive2 { name="mdsr"; version="0.1.7"; sha256="1angy75nyhzwfhmb4axs14yl0jsxjaiqh5nz2jpmi5j890y32zda"; depends=[babynames DBI dbplyr downloader dplyr fs ggplot2 mosaic RMySQL]; }; - mdsstat = derive2 { name="mdsstat"; version="0.3.2"; sha256="1ff53ddvn9rla02a0g4hgp9c1grlwja05ans9gjk5ya2nwilpj2l"; depends=[lubridate mds]; }; - mdw = derive2 { name="mdw"; version="2017.12-03"; sha256="054vssnypbik0yf6smicggnkrqf6kx8k21nbf5rminsh00sx39k1"; depends=[]; }; + mdthemes = derive2 { name="mdthemes"; version="0.1.0"; sha256="1k0fylg8jz0xdfwq85wap6lgrb9zi219vhmry4lysqssx2szkngk"; depends=[cowplot ggplot2 ggtext ggthemes hrbrthemes tvthemes]; }; + mdw = derive2 { name="mdw"; version="2020.6-17"; sha256="0jjajgb1w3vx7vqn2z90xq39hvbcrrd2ky8p31g5absqwwm7lwpa"; depends=[kyotil MASS Matrix]; }; meaRtools = derive2 { name="meaRtools"; version="1.0.4"; sha256="1nxyvdq4670696mhg0svxxlvk9hnr8szai8b18pw6754kmw1bjvn"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; }; meanShiftR = derive2 { name="meanShiftR"; version="0.53"; sha256="1pla9hr9nbbnc3hcmk0ywfh6129zng5lp3dmjqb3cgdrmwkdrx9i"; depends=[]; }; meanr = derive2 { name="meanr"; version="0.1-2"; sha256="0w9jgncbnf82x747pxrpbbbvajmksc1dq79cc4hxr2cpvqsqyfsh"; depends=[]; }; + meantables = derive2 { name="meantables"; version="0.1.0"; sha256="1007w4vjb472v15ny1h8dxdzxhddk4z5s5n77ayvcbwpc8nlzmk7"; depends=[dplyr rlang tibble]; }; measuRing = derive2 { name="measuRing"; version="0.5"; sha256="0yblqkv5444y75jkb6d0zs728i6vybm294h7b5622pwfjqlfhnh2"; depends=[dplR pastecs png tiff]; }; measurements = derive2 { name="measurements"; version="1.4.0"; sha256="1kihavs9vgxwqjm9z1zjjngkmcwfsv8dg7nn9nrv5r06k5hv8bz6"; depends=[]; }; measures = derive2 { name="measures"; version="0.2"; sha256="1pp6nz30fbsqsvznim9j4vvz3z57sq5r234807flxfy0w7knydbd"; depends=[]; }; - meboot = derive2 { name="meboot"; version="1.4-7"; sha256="1i0h71aj49hyj889447s611gz668ys7xlr1i82b5nvaf6chfbfin"; depends=[dynlm nlme]; }; - medExtractR = derive2 { name="medExtractR"; version="0.1"; sha256="08hzl5kk3jqs8vc53zrd1qj5g24dkpvwwvswqp57719c4ybi3ia3"; depends=[stringr]; }; + meboot = derive2 { name="meboot"; version="1.4-8"; sha256="10kii09v1nm7m3sqn1wsszc5m0zn0bkip9zjpvn84xdf3nz9kp8b"; depends=[dynlm nlme tdigest]; }; + medExtractR = derive2 { name="medExtractR"; version="0.2"; sha256="17fc54w1jizqji27xsyiq6v31q8r86sps1nl6mgqsi5h7mzni98g"; depends=[stringr]; }; mederrRank = derive2 { name="mederrRank"; version="0.0.8"; sha256="1fvvik3bhjm6c0mhi2ma915986k2nj3lr2839k5hfrr7dg3lw3f4"; depends=[BB numDeriv]; }; - medfate = derive2 { name="medfate"; version="0.9.0"; sha256="0vxrj9x9f975vxfjsv83riyazlvbpn5q9z49ywnayiikn1snbrnh"; depends=[ggplot2 meteoland Rcpp sp spdep]; }; - medflex = derive2 { name="medflex"; version="0.6-6"; sha256="04cjqhyihxf1imbl9y9s58qpy6lmxsh2gwy4bras03hx52slzl5r"; depends=[boot car Matrix multcomp sandwich]; }; + medfate = derive2 { name="medfate"; version="1.0.0"; sha256="1rm1m3skma21d0r7pg5bk7v9cywpb2hjlib8xyrir6bi505lkfbq"; depends=[ggplot2 meteoland Rcpp sp spdep]; }; + medflex = derive2 { name="medflex"; version="0.6-7"; sha256="171vp0wmmmbz42xcwjy065vhvig49s4ac2hzawfww2mvpfj0g0fj"; depends=[boot car Matrix multcomp sandwich]; }; mediacloudr = derive2 { name="mediacloudr"; version="0.1.0"; sha256="1r11mpz44msla71lqw45r9s8z7rwvbnqi026l0ljx6crby183h0w"; depends=[httr jsonlite rvest xml2]; }; mediation = derive2 { name="mediation"; version="4.5.0"; sha256="0i88wvqqw8cmxmh9i78rqzp4s16zhf12dgl9fsk9bhw7hxhhc0i1"; depends=[boot Hmisc lme4 lpSolve MASS Matrix mvtnorm sandwich]; }; + mediationsens = derive2 { name="mediationsens"; version="0.0.2"; sha256="1wvd9kcz4sh0ylydp8q49013i408bn9w5m5ihg0s5r0489359385"; depends=[distr mediation]; }; medicalrisk = derive2 { name="medicalrisk"; version="1.3"; sha256="12p3mjy6lphjajxz7is04cahp0598ip9ixfkdimvw1k8n5hs9mj0"; depends=[hash plyr reshape2]; }; medicare = derive2 { name="medicare"; version="0.2.1"; sha256="00a1gml2khzisdavnaip6ap4bw45b17nbl9cqb1mqrm4y0p9gm16"; depends=[]; }; meditate = derive2 { name="meditate"; version="0.1.3"; sha256="02mgnbxlvi73zpnghlcx89jvri8144cf0bzq0hrbhh2nq2c1sdjg"; depends=[audio checkmate deldir wesanderson]; }; @@ -10212,33 +10594,33 @@ in with self; { meifly = derive2 { name="meifly"; version="0.3"; sha256="1x3lhy7fmasss0rq60z5qp74ni32sahw62s8cnp2j431sp95pczc"; depends=[leaps MASS plyr]; }; mekko = derive2 { name="mekko"; version="0.1.0"; sha256="09y50k4r4mnx351a5zhkqg9s2xyl3d149dhmfy2z6hzm5yg2ajyi"; depends=[ggplot2]; }; meltt = derive2 { name="meltt"; version="0.4.1"; sha256="1113rdw0jglwkcd3g31llhgzqmwpxfz2bp60m3x2zdbdrvwc1z9n"; depends=[dplyr ggplot2 leaflet plyr Rcpp RcppArmadillo reticulate shiny shinyjs tibble tidyr]; }; - melviewr = derive2 { name="melviewr"; version="0.0.1"; sha256="19syc3d6zc0hmcjjdj7ibrdqxcdlh95ny970f3ska453qh1898b2"; depends=[cairoDevice gtools gWidgets gWidgetsRGtk2 jsonlite RColorBrewer RGtk2 RNifti]; }; mem = derive2 { name="mem"; version="2.15"; sha256="1q8h6mbpzybg1vzi2pgp8fpxfrp4d729n5ghh0a54wjdwdjgkpq1"; depends=[boot dplyr EnvStats ggplot2 mclust RColorBrewer RcppRoll sm tidyr]; }; memapp = derive2 { name="memapp"; version="2.13"; sha256="0n4awpxsz34rrz53bp4dyfgs9zssrxd4f8zyj6zw89j6ahkz85w6"; depends=[dplyr DT foreign formattable ggplot2 haven mem openxlsx plotly RColorBrewer readxl RODBC shiny shinyBS shinydashboard shinyjs shinythemes shinyWidgets stringi stringr tidyr]; }; meme = derive2 { name="meme"; version="0.2.2"; sha256="1q78q8080vvqni8ncqp326pidfjfia0f2b6pis08m7fr1q1gcqca"; depends=[ggplot2 gridGraphics magick showtext sysfonts]; }; memery = derive2 { name="memery"; version="0.5.2"; sha256="1hr52g69lr2n84yczm8i8yxh7rys5nr8jk1hcmv548p5y79l8k9s"; depends=[Cairo colourpicker cowplot ggplot2 jpeg magrittr png purrr shiny shinyBS shinycssloaders showtext sysfonts]; }; memgene = derive2 { name="memgene"; version="1.0.1"; sha256="1x3vf2f1yh40xw5vqcjlrn07zn9zh3sx4kc9dijxzygd9crl5a29"; depends=[ade4 gdistance raster vegan]; }; - memisc = derive2 { name="memisc"; version="0.99.22"; sha256="0w1p7zcdrif692i40r5m06lykr2f0vhibrh5pwz7ndhbxlr1pk8x"; depends=[data_table lattice MASS repr]; }; + memisc = derive2 { name="memisc"; version="0.99.25.6"; sha256="1cb74gl205f6rhlj5hk433glba89ljrn5fzypgb5fngks7jsxawl"; depends=[data_table lattice MASS repr]; }; memo = derive2 { name="memo"; version="1.0.1"; sha256="14nvqi1qsin45ksd0wp9cigjk1gghr4jijdqkaqh177dwa244r9j"; depends=[digest]; }; - memochange = derive2 { name="memochange"; version="1.1.0"; sha256="1im6342by0pf1kmz8jps9d3y752k87bl02v5ddywbvh0idkdnba5"; depends=[forecast fracdiff longmemo LongMemoryTS sandwich strucchange urca]; }; + memochange = derive2 { name="memochange"; version="1.1.1"; sha256="144134kpchb7ps8b2g7pyga5add0iqphzcwygf11aybmbzmp90x7"; depends=[forecast fracdiff longmemo LongMemoryTS sandwich strucchange urca]; }; memoise = derive2 { name="memoise"; version="1.1.0"; sha256="034qfc2xlh30x1q2vya239w34a3ir3y2fwnx2agbgbi6592zjxmj"; depends=[digest]; }; - memor = derive2 { name="memor"; version="0.2"; sha256="10w2jw9ma7yds2d179l7bv4rzpggp3l04kvqnncii6yf5f4lj9cd"; depends=[knitr rmarkdown yaml]; }; + memor = derive2 { name="memor"; version="0.2.2"; sha256="0b386l4aclj86rhzzhmi8dmkkbcd1pwaj3as0lc11q0nj2gjrs7i"; depends=[knitr rmarkdown yaml]; }; memoria = derive2 { name="memoria"; version="1.0.0"; sha256="05nx6xkgf1mkn1ajjizwp66xhn7ddbvgdnmkdbcl4s7sq456vczw"; depends=[cowplot ggplot2 HH ranger stringr tidyr viridis viridisLite zoo]; }; memuse = derive2 { name="memuse"; version="4.1-0"; sha256="1bbjp8y0ji71956fbaxiil7ynq2nkmmgz7i9xps83m3bbp5d3mjq"; depends=[]; }; merDeriv = derive2 { name="merDeriv"; version="0.1-9"; sha256="1zp9w79pm3n8673h3h7ic9zx6p5i0cd6kpmbyfs365flgvcbdmsg"; depends=[lavaan lme4 Matrix matrixcalc nonnest2 numDeriv sandwich]; }; - merTools = derive2 { name="merTools"; version="0.5.0"; sha256="19qf3nn57hvd80x2l0m34w2jaky0jgsgc4nh0vdqjl8kpx4044cr"; depends=[abind arm blme broom dplyr foreach ggplot2 lme4 mvtnorm shiny]; }; + merTools = derive2 { name="merTools"; version="0.5.2"; sha256="1ka9aa3fgs1kqfqhi1sz6v6g5mbbbzxyb7c0n8s981g8d04vsi00"; depends=[abind arm blme broom_mixed dplyr foreach ggplot2 lme4 mvtnorm shiny]; }; mergeTrees = derive2 { name="mergeTrees"; version="0.1.3"; sha256="17aqgfd1ky5zq6i9s1djvdqjdd8lzkblf0cdw82i9mpzfhcz1fav"; depends=[Rcpp]; }; mergedblocks = derive2 { name="mergedblocks"; version="1.0.0"; sha256="0g209f9vr5gjgsljnb6i8jr48azv982dbfc1anggfip82qivicqn"; depends=[randomizeR]; }; - merlin = derive2 { name="merlin"; version="0.0.2"; sha256="0r1hxbpqhih0nyya26hphymz4jrw88zfd3bypf1hwj5dsk60341f"; depends=[MASS randtoolbox statmod survival]; }; + merlin = derive2 { name="merlin"; version="0.1.0"; sha256="11in84pxgz76l2cfpd7m03fai1gwdhp2rzrn3pbwrpywgq210pmj"; depends=[MASS randtoolbox statmod survival]; }; merror = derive2 { name="merror"; version="2.0.2"; sha256="13d9r5r83zai8jnzxaz1ak40876aw20zbpr244gs55rvj5j7f87q"; depends=[]; }; messaging = derive2 { name="messaging"; version="0.1.0"; sha256="0q19cqp1zgh0yhk1ql0jqf414bhx6jwhkairq6wx2cmkli2g7k1y"; depends=[dplyr glue magrittr rlang stringr]; }; + met = derive2 { name="met"; version="0.1.0"; sha256="0714103xzc4n178307czxmcv7ygjiigjr9b6xnj240ljp7qmln19"; depends=[DiPs]; }; metR = derive2 { name="metR"; version="0.7.0"; sha256="0zdnsggvmkyxq0a6n7rhzp82n4hciayzajs4svw504i30ij5q5db"; depends=[checkmate data_table digest fields Formula formula_tools ggplot2 gtable lubridate memoise plyr purrr RCurl scales sp stringr]; }; metRology = derive2 { name="metRology"; version="0.9-28-1"; sha256="1syjwblyd18myxrs0hx4m91fgb6zs3r4g7w701j2f2pw6j9mvz0y"; depends=[MASS numDeriv robustbase]; }; metScanR = derive2 { name="metScanR"; version="1.2.3"; sha256="1v7zrxj3wspx6f5n5s75skcygbf3r85rn4p0z9iwbrbrgxwi4qgs"; depends=[geosphere leaflet matlab plyr RCurl]; }; - meta = derive2 { name="meta"; version="4.11-0"; sha256="06miv0yjxqxabi9iff08hydzb6qjdahy3dswxgkdp5zybma6dva6"; depends=[CompQuadForm lme4 metafor]; }; + meta = derive2 { name="meta"; version="4.13-0"; sha256="1aiazqirgz7mnpwg0g0m9x5rbdpvdpmbx6q7hpqjih66qjn2hlfh"; depends=[CompQuadForm lme4 metafor]; }; meta4diag = derive2 { name="meta4diag"; version="2.0.8"; sha256="1ila8x9r1rdmlwfpzfx1zj5yx1m4yrbhyb74db4wqbh1dswn7zsm"; depends=[caTools shiny shinyBS sp]; }; metaBLUE = derive2 { name="metaBLUE"; version="1.0.0"; sha256="0ppn4bvr10z32pghmv4wjv86k6n5y5bkfxc6h5mvb556v6jnl6d8"; depends=[Matrix]; }; - metaBMA = derive2 { name="metaBMA"; version="0.6.2"; sha256="0g2npgr9rqf0f9xqdp4wl3263shrp28j4i63j4fwd91xk9qmy8my"; depends=[BH bridgesampling coda LaplacesDemon logspline mvtnorm Rcpp RcppEigen rstan rstantools StanHeaders]; }; + metaBMA = derive2 { name="metaBMA"; version="0.6.3"; sha256="1q9mb72p4bccl79hpj01fa3bs3n9hbcf63nzpni3ba9limiizb82"; depends=[BH bridgesampling coda LaplacesDemon logspline mvtnorm Rcpp RcppEigen rstan rstantools StanHeaders]; }; metaDigitise = derive2 { name="metaDigitise"; version="1.0.1"; sha256="1cwvb6b4a1pfixbknbjjylsmpkccgi163h0kbf7zfjaqjg2y9mzh"; depends=[magick purrr]; }; metaLik = derive2 { name="metaLik"; version="0.43.0"; sha256="1li40pgd9z00nrph9njwn6wysb1i9dkpqzcp6fzds6asvcxlqqfl"; depends=[]; }; metaMA = derive2 { name="metaMA"; version="3.1.2"; sha256="1mjyz06q1kc8lhfixpym4ndpnisi1r849fj3da6riwfd6ab1v181"; depends=[limma SMVar]; }; @@ -10246,11 +10628,11 @@ in with self; { metaRMST = derive2 { name="metaRMST"; version="1.0.0"; sha256="1mq9j7iczjh7d3cps9g1bh0f8k388bdn8d5lkjs2s8y9fq1kxzmx"; depends=[meta mvmeta rstpm2 survival survRM2]; }; metaRNASeq = derive2 { name="metaRNASeq"; version="1.0.2"; sha256="1xz7df7ypq4326yg429pgxd6aldp14c3h3qi20j5nqr5xgsdgzqa"; depends=[]; }; metaSDTreg = derive2 { name="metaSDTreg"; version="0.2.0"; sha256="08q2llzqakrrxab73a63s4bpqq461m4q1dl60za9826yxl3g86b8"; depends=[Matrix maxLik ordinal truncnorm]; }; - metaSEM = derive2 { name="metaSEM"; version="1.2.3.1"; sha256="09icvg60fkgxq28cfnkz93kyj5kza0vg9wifhsis71a35x7k0x72"; depends=[ellipse lavaan MASS Matrix mvtnorm numDeriv OpenMx]; }; - metaboGSE = derive2 { name="metaboGSE"; version="1.2.3"; sha256="0v74h5pdfg8d8chrqk0z773w8hhy5szlxm9mzz00fdrmz0wx8838"; depends=[AnnotationDbi ape GO_db Matrix sybil]; }; + metaSEM = derive2 { name="metaSEM"; version="1.2.4"; sha256="0dhdp9wm5idblf6z18a192c4zz0r993y6nqgs22icmmc4ags73q6"; depends=[ellipse lavaan MASS Matrix mvtnorm numDeriv OpenMx]; }; + metaboGSE = derive2 { name="metaboGSE"; version="1.2.4"; sha256="1blgadhlvc6bsy6dj0lw8gp7j5gbbv2rqwzav1bmcgvn4fv6asw8"; depends=[AnnotationDbi ape Matrix sybil]; }; metabolighteR = derive2 { name="metabolighteR"; version="0.1.0"; sha256="1kbwxwcx5f836bhwx32a41c6753832wigx0b6gi9zblc4qsnqvlq"; depends=[dplyr httr magrittr purrr]; }; - metacart = derive2 { name="metacart"; version="2.0-2"; sha256="1rn246avzisbrw9parap7hpgxb7pj5y43zfvayaiz4ilhdl5vj4y"; depends=[ggplot2 gridExtra Rcpp rpart]; }; - metacoder = derive2 { name="metacoder"; version="0.3.3"; sha256="0d7fpx5zpggc8k3y882mlw4szn7ghzckyiaxj9x652xink8zi397"; depends=[ape biomformat cowplot crayon dplyr GA ggfittext ggplot2 ggrepel igraph lazyeval magrittr phylotate RColorBrewer Rcpp RCurl readr reshape reshape2 rlang scales seqinr stringr svglite taxa taxize tibble traits vegan viridisLite zoo]; }; + metacart = derive2 { name="metacart"; version="2.0-3"; sha256="1wim72fvhx6cyc16c9gl8cwzbhlpzilk7q8gi4jnzzazqmc1kb5n"; depends=[ggplot2 gridExtra Rcpp rpart]; }; + metacoder = derive2 { name="metacoder"; version="0.3.4"; sha256="0qnsn6zpk9vf5p4jj0pdkldi0p7a1rjccdrk68qswy04dlsq15vg"; depends=[ape biomformat cowplot crayon dplyr GA ggfittext ggplot2 ggrepel igraph lazyeval magrittr phylotate RColorBrewer Rcpp RCurl readr reshape reshape2 rlang scales seqinr stringr svglite taxa taxize tibble traits vegan viridisLite zoo]; }; metacom = derive2 { name="metacom"; version="1.5.3"; sha256="0c0gzn28cl2sl52wx2n36jm9c18d9s3yqjyx88kgbmd9069z1nvk"; depends=[vegan]; }; metacor = derive2 { name="metacor"; version="1.0-2.1"; sha256="0y3z7jbhw5c2dbn9fx9wlw1311irjc2xvnm5hnaixbbj53qz24n0"; depends=[gsl rmeta]; }; metadynminer = derive2 { name="metadynminer"; version="0.1.6"; sha256="0zg08lwnimnmfwac0d5kg8yhsl88gmn029dra18phy1jzkfnsx34"; depends=[Rcpp]; }; @@ -10259,16 +10641,15 @@ in with self; { metafor = derive2 { name="metafor"; version="2.4-0"; sha256="1b599fxk7s0brkchmx698fr5k4g1kzkia2rnlvhg349ffs5nfjmn"; depends=[Matrix nlme]; }; metaforest = derive2 { name="metaforest"; version="0.1.3"; sha256="1q6m60cd7gl7y0gdjd10ky25hwv5jc4x5g5sr5w61xc3j2hnw8in"; depends=[data_table ggplot2 gtable metafor ranger]; }; metafuse = derive2 { name="metafuse"; version="2.0-1"; sha256="1zdw22f5kzvy2xr3c2csy873hcags60as567brc2sw17d0apfy8j"; depends=[evd glmnet MASS Matrix]; }; - metagam = derive2 { name="metagam"; version="0.1.0"; sha256="1mya00bvbxz3fg506s4km1193yamgzqqq8v6v286jcp19w4jr07s"; depends=[dplyr furrr ggplot2 knitr metafor metap purrr rlang stringr tibble tidyr viridis]; }; + metagam = derive2 { name="metagam"; version="0.1.2"; sha256="0vh78fzj7c6f4xca5wx2q9x33046wajriia103nwbdacrp48hpki"; depends=[dplyr furrr ggplot2 knitr metafor metap purrr rlang stringr tidyr]; }; metagear = derive2 { name="metagear"; version="0.6"; sha256="1xfpjqawnwsg2djnygzyg6ak7gylj60wlhfkkipnrpy8bbpvc8j2"; depends=[EBImage hexView MASS Matrix metafor RCurl stringr]; }; - metagen = derive2 { name="metagen"; version="1.0"; sha256="0jvbm22976aqvmfnjzs51n2w099yj5hpx6hd0pgvbia80jk7b9vk"; depends=[BatchExperiments BatchJobs BBmisc ggplot2 lhs MASS metafor ParamHelpers plyr]; }; metaheuristicOpt = derive2 { name="metaheuristicOpt"; version="2.0.0"; sha256="0ra4hl9l1jlzymj218m2i6xrxfacyx4aaln5pk7q4di2ks0nq11m"; depends=[]; }; metamedian = derive2 { name="metamedian"; version="0.1.5"; sha256="1v2nha2qc9vs2s9nfvbia033ppprkwxj5fadlrpy20fj2lr8z7z6"; depends=[estmeansd Hmisc metafor]; }; metamer = derive2 { name="metamer"; version="0.2.0"; sha256="0wdhr83mph9v7vb9mfhf7lcwmp0smz72sniass7kxcbj6j9hga4g"; depends=[FNN progress]; }; - metamicrobiomeR = derive2 { name="metamicrobiomeR"; version="1.1"; sha256="16ymdhhr7h2785gfgrw7qi1fjvawiz599h42qi7l0v6djinbxlw2"; depends=[caret compositions dplyr foreign gamlss gdata ggplot2 gplots gridExtra httr jsonlite knitr lme4 lmerTest magrittr matrixStats meta mgcv plyr randomForest RColorBrewer RCurl repmis reshape2 rmarkdown tidyr zCompositions]; }; metamisc = derive2 { name="metamisc"; version="0.2.2"; sha256="0ll245a3f442n7jyjshcn87l725mgk132ri73kynrwh0z8g2r7i5"; depends=[ggplot2 lme4 metafor mvtnorm plyr pROC]; }; + metan = derive2 { name="metan"; version="1.7.0"; sha256="1lk9x83c7v8njv71dr0lvcz6376w6q5wc0wphndvy364lg8c7i37"; depends=[ade4 cowplot dplyr FWDselect GGally ggforce ggplot2 ggrepel lme4 lmerTest magrittr progress purrr rlang tibble tidyr tidyselect]; }; metansue = derive2 { name="metansue"; version="2.4"; sha256="1ja7a3z4d764a1rcf256kmzf8xc6d8x7mqq12vzznw5ks8r2p9hk"; depends=[]; }; - metap = derive2 { name="metap"; version="1.3"; sha256="1jmmmmjiklaxfl604hwqil193ydaghvd5jv8xsr4bx3pzn5i9kvz"; depends=[lattice mutoss Rdpack TFisher]; }; + metap = derive2 { name="metap"; version="1.4"; sha256="19c51fa5kh4yq3v7jd8cilgv9xr59qv20xprqgmlxbfh4gc27b2z"; depends=[lattice mathjaxr mutoss Rdpack TFisher]; }; metaplot = derive2 { name="metaplot"; version="0.8.3"; sha256="1zw8bq2fy9m15dfc92ag0dz2k9dqrf5jbvfaycizcgsgaqd79s1c"; depends=[dplyr encode ggplot2 gridExtra gtable lattice magrittr rlang scales tidyr]; }; metaplotr = derive2 { name="metaplotr"; version="0.0.3"; sha256="01iala6cxsxv30fnlh80md5mpy3ksd2piw90zcls8f68g1c6v1jy"; depends=[ggplot2 gridExtra]; }; metaplus = derive2 { name="metaplus"; version="0.7-11"; sha256="05pkgw0zlq3q9mvdw2yxz9mxzqwq3c8q6cwvh87cigw1pf8y9an7"; depends=[bbmle boot fastGHQuad lme4 MASS metafor numDeriv]; }; @@ -10276,7 +10657,7 @@ in with self; { metapower = derive2 { name="metapower"; version="0.1.0"; sha256="0y1s7szljpx763dm38nnm5q54x7paq0hn7l47c3vyjha99fpzzjw"; depends=[cowplot dplyr ggplot2 knitr magrittr rlang rmarkdown testthat tidyr]; }; metapro = derive2 { name="metapro"; version="1.5.8"; sha256="0ymbqzm317fiywzxaizddhvjzwp2wyx9y7zgbg4nrz11l3r2bp2n"; depends=[metap rSymPy]; }; metarep = derive2 { name="metarep"; version="1.0.1"; sha256="0jnxx11jxj63ry0bkjlh9g2x2pr2qi24nql99iibz2ckbx8344p3"; depends=[meta]; }; - metasens = derive2 { name="metasens"; version="0.4-0"; sha256="1rgb2b48lwvrg1f39dzg6d9jr1ya2p7la2jrc3zs3jks28arjr2x"; depends=[meta]; }; + metasens = derive2 { name="metasens"; version="0.4-1"; sha256="158lv7knybfhavnfra9f6dyhc7zska70rv06aq5mvzzj1mw4m4mj"; depends=[meta]; }; metatest = derive2 { name="metatest"; version="1.0-5"; sha256="1h3dcs1m7606b3a41yw2lak3lrqmsbpnx67qv24wvq003apz1sfd"; depends=[]; }; metathis = derive2 { name="metathis"; version="1.0.2"; sha256="07aha4j401zlm6abfmq70vqc215bpsi5hqi50npz33rpb1m3r9rq"; depends=[htmltools knitr magrittr purrr]; }; metavcov = derive2 { name="metavcov"; version="1.1"; sha256="1x87knvypkfg0x223aiak7fy7zdlfn74crmvnqzhxf2vmxljnvnh"; depends=[corpcor]; }; @@ -10286,30 +10667,34 @@ in with self; { meteo = derive2 { name="meteo"; version="0.1-5"; sha256="0n37plka9vsxwd03lca3h6m8dcz3f1bi46jn3bz7vyilnkq9hcdk"; depends=[gstat plyr raster rgdal snowfall sp spacetime]; }; meteoForecast = derive2 { name="meteoForecast"; version="0.53"; sha256="15bjhkcn4zcll3cfgpzcdj0zv753x29qsjndy3h2zzqn83qywx9s"; depends=[ncdf4 raster sp XML zoo]; }; meteogRam = derive2 { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; }; - meteoland = derive2 { name="meteoland"; version="0.9.2"; sha256="0mrkdvc6dj7jny5b4fqshq2wmc9mvmvixbdzsgcyfqlxzzg5r1qz"; depends=[httr jsonlite ncdf4 Rcpp rgdal sp spdep]; }; + meteoland = derive2 { name="meteoland"; version="0.9.3"; sha256="1zij805zrakdyf3yy52fsgz28ww5c5a7yip7w9xn2vf6d9w70k5m"; depends=[httr jsonlite ncdf4 Rcpp rgdal sp spdep]; }; meteor = derive2 { name="meteor"; version="0.3-4"; sha256="01009d9wpxybig4n82m48hqqg1k4x4shcjxfy8y0kk7cgfdb4naw"; depends=[Rcpp]; }; meteorits = derive2 { name="meteorits"; version="0.1.1"; sha256="1vk8pbhfc5mbkbpw7ml81gx9i8187xp3vx36pbyyhjbrpy6gqabx"; depends=[MASS pracma Rcpp RcppArmadillo]; }; methcon5 = derive2 { name="methcon5"; version="0.1.0"; sha256="08xsi6j65izxqcrlh37f2d7m3pwna1v6zvdv96mqylsjqgqmbk5x"; depends=[dplyr magrittr purrr rlang]; }; + metools = derive2 { name="metools"; version="1.0.0"; sha256="05l49ifx2nnlbdxh2qhdb0islf95fc67720rm5in7mrlida4khnq"; depends=[ggplot2 lubridate scales stringr tibble tidyr]; }; metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; metropolis = derive2 { name="metropolis"; version="0.1.5"; sha256="0nhkzy1miycqa2jqh9gh1l48n03nig99q19f46dm8qqci7a90vlp"; depends=[coda]; }; mets = derive2 { name="mets"; version="1.2.7.1"; sha256="1b3bsxdwzl5rilnsga9cgzb7dafcfk2q39582rif34wim8xxzzv7"; depends=[lava mvtnorm numDeriv Rcpp RcppArmadillo survival timereg]; }; metsyn = derive2 { name="metsyn"; version="0.1.2"; sha256="0iwp0nz07yd33qd93fjblmvik1l1xkv6rkccn3054zs2bkrzjq4f"; depends=[foreach readr stringr tibble]; }; mev = derive2 { name="mev"; version="1.13.1"; sha256="1zbr5f8w56c9z0lp4ak47fxnnfrdm74liqcjvij0n4ajqs6glaak"; depends=[alabama boot evd nleqslv nloptr Rcpp RcppArmadillo TruncatedNormal]; }; mewAvg = derive2 { name="mewAvg"; version="0.3.0"; sha256="16gc78ccjffp9qgc7rs622jql54ij83ygvph3hz19wpk22m96glm"; depends=[]; }; - mexhaz = derive2 { name="mexhaz"; version="1.7"; sha256="1z0516i7asyn3248xzvvc377slcy2zv6f9qalkd33r3dlc0js4s8"; depends=[lamW MASS numDeriv statmod survival]; }; - mfGARCH = derive2 { name="mfGARCH"; version="0.1.9"; sha256="0vmxyjg2jj39dd1307d5jwz3033j8ldfqhysmmzl3i1b5ypfd5q5"; depends=[maxLik numDeriv Rcpp zoo]; }; - mfbvar = derive2 { name="mfbvar"; version="0.5.3"; sha256="065bpwlzqmvgrdm9jp8030jcs4sqnckyxvrgdn0jcnmmgiq88vgx"; depends=[dplyr ggplot2 GIGrvg lubridate magrittr Rcpp RcppArmadillo RcppParallel RcppProgress stochvol tibble]; }; + mexhaz = derive2 { name="mexhaz"; version="1.8"; sha256="1lgv626a6b2k0ccprzfr671ldyqprn17fi5bsaj63vsi10gdd503"; depends=[lamW MASS numDeriv statmod survival]; }; + mfGARCH = derive2 { name="mfGARCH"; version="0.2.0"; sha256="19v0kqn70h42vsyg4ldi5qivhwh97zk8shvahdzxbcqjjig6lylh"; depends=[maxLik numDeriv Rcpp zoo]; }; + mfbvar = derive2 { name="mfbvar"; version="0.5.4"; sha256="1rarmlfb8fpc8zwydzf198w8z5wrw7gnr4j93rnbr9y5c0z0pmh5"; depends=[dplyr ggplot2 GIGrvg lubridate magrittr Rcpp RcppArmadillo RcppParallel RcppProgress stochvol tibble zoo]; }; mfdb = derive2 { name="mfdb"; version="6.2-0"; sha256="11xi915plc90awasmny9ynwmz0yw18frfp1q2xv7bqk4v96fcxgp"; depends=[DBI getPass logging RPostgreSQL]; }; + mfe = derive2 { name="mfe"; version="0.1.5"; sha256="1pw9gw9bd778s57dyjwbmrmsla4m8dkf8g49gplv4zrsvlgsgbr3"; depends=[cluster clusterCrit e1071 ECoL infotheo MASS rpart rrcov]; }; mfp = derive2 { name="mfp"; version="1.5.2"; sha256="1i90ggbyk2p1ym7xvbf4rhyl51kmfp6ibc1dnmphgw15wy56y97a"; depends=[survival]; }; mfx = derive2 { name="mfx"; version="1.2-2"; sha256="04pwp67i4sn4rf497pgy6qifwvrcmwyxn8x5sn96fy8qyrdzjfhj"; depends=[betareg lmtest MASS sandwich]; }; mgarchBEKK = derive2 { name="mgarchBEKK"; version="0.0.2"; sha256="1k4c34srnckbh5kchzmm44l91ma9sw0gi4y225igs3cl79212q9c"; depends=[mvtnorm tseries]; }; + mgc = derive2 { name="mgc"; version="2.0.2"; sha256="1l9qs4nz1rn56qp569nh26yz3c7i4zh3r43c209zh7kvizpagx0i"; depends=[abind boot energy MASS raster]; }; mgcViz = derive2 { name="mgcViz"; version="0.1.6"; sha256="12isaqpbhdg2qhw76wj6hqi233dw3md061bbirkgzr5clrb8kxlk"; depends=[gamm4 GGally ggplot2 gridExtra KernSmooth matrixStats mgcv miniUI plyr qgam rgl shiny viridis]; }; mgcv = derive2 { name="mgcv"; version="1.8-31"; sha256="1if34mqsn9r7g0l82lxvvx0wjhi9paqdymyd73nschxcl1if8vbk"; depends=[Matrix nlme]; }; - mglmn = derive2 { name="mglmn"; version="0.0.2"; sha256="1ijkmr85s4yya0hfwcyqqskbprnkcbq8sc9c889i0gy0543fgqz4"; depends=[mvabund snowfall]; }; - mgm = derive2 { name="mgm"; version="1.2-9"; sha256="0fbri6a6g36cpqw577hdmy2qyj8hd2zkaafj7s5564y1z7xkxn4x"; depends=[glmnet gtools Hmisc matrixcalc qgraph stringr]; }; + mglmn = derive2 { name="mglmn"; version="0.1.0"; sha256="1g642hhs28q6x34xgrfrmmsb2jsn9zy4jxad0x5ai3px48zzdb4r"; depends=[mvabund snowfall]; }; + mgm = derive2 { name="mgm"; version="1.2-10"; sha256="1paiarr7g1p214k7x19njpf5xkhfpcsm5ds28l4y7qrj0jdvb5i6"; depends=[glmnet gtools Hmisc matrixcalc qgraph stringr]; }; mgpd = derive2 { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[corpcor evd fields numDeriv]; }; - mgsub = derive2 { name="mgsub"; version="1.7.1"; sha256="0v3386a7i71ixqidqfqakl428rnq0z9pjz08lgmyvray0ls5vmvi"; depends=[]; }; + mgsub = derive2 { name="mgsub"; version="1.7.2"; sha256="02l1b96zv36ia0c97wgcwfhi037mbn3wy9c64hcw0n0w67yj77rr"; depends=[]; }; mgwrsar = derive2 { name="mgwrsar"; version="0.1"; sha256="13h56fgq3fs28fqh19hwbcza622xd921qnjwcgw2rjwaabqz70w5"; depends=[doParallel foreach htmltools leaflet Matrix nabor Rcpp RcppEigen sp spgwr]; }; + mhazard = derive2 { name="mhazard"; version="0.1.2"; sha256="0axapk7rw8vhgmkkr4q9avmlmwi1cdyy0q70447hdp6hx9xg1fd6"; depends=[boot plot3D Rcpp RcppArmadillo rootSolve survival]; }; mhsmm = derive2 { name="mhsmm"; version="0.4.16"; sha256="009dj0zkj1zry7jr9hf4cknb686z50a2l967if64xm0dvjmp7dgs"; depends=[mvtnorm]; }; mhtboot = derive2 { name="mhtboot"; version="1.3.3"; sha256="1z0p8ny9lpnrshgas7cad2lv7j0blw0n6ihiimw600n70h73jwrn"; depends=[ggplot2 reshape2]; }; mhurdle = derive2 { name="mhurdle"; version="1.1-8"; sha256="0nnzhcp9ghx2ifaj8lvhvv1acb3dpwi8m9n1al8zjvfg35wmxwwm"; depends=[Formula maxLik survival texreg truncreg]; }; @@ -10326,48 +10711,52 @@ in with self; { micEconIndex = derive2 { name="micEconIndex"; version="0.1-6"; sha256="1ihly6qpyg1pms4nkvs6khxxqwr3fwg57i8pg0yhyy1apqxyj2xl"; depends=[miscTools]; }; micEconSNQP = derive2 { name="micEconSNQP"; version="0.6-8"; sha256="183hg4iap97is8cdaqxmnj9z8yybvpfnhg2kf85nfy1nl7b30xl2"; depends=[MASS miscTools systemfit]; }; micar = derive2 { name="micar"; version="1.1.1"; sha256="09vpijva39fwpvdpfglwr3xmz469pnmz371ms7z5av6w2193ls5n"; depends=[httr jsonlite]; }; - mice = derive2 { name="mice"; version="3.8.0"; sha256="1ibybvigqkkla4xwhqs2w4m6c68alfcdsljx99nn4p92rzb1ig04"; depends=[broom dplyr lattice Rcpp tidyr]; }; - miceFast = derive2 { name="miceFast"; version="0.5.1"; sha256="0n09l6y7jwcskv2lfynyzl614c7x84yyc52wqwyhnzvd8lzapp5d"; depends=[data_table Rcpp RcppArmadillo]; }; + mice = derive2 { name="mice"; version="3.11.0"; sha256="1gawccw32l00rcriyxys0mzbxh44x04rziy0cbycc3i1qm39d4fq"; depends=[broom dplyr generics lattice Rcpp tidyr]; }; + miceFast = derive2 { name="miceFast"; version="0.6.2"; sha256="109j98gs3b08zrg4ndc142360ilk0l2gp1b4g0vgg7143dgg2dia"; depends=[data_table dplyr lifecycle magrittr Rcpp RcppArmadillo]; }; miceMNAR = derive2 { name="miceMNAR"; version="1.0.2"; sha256="1s607icaf3c25mn8xdi3zkzmm8m7qd9a6vjdlz5j7ig2gc9f2y2d"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; }; miceRanger = derive2 { name="miceRanger"; version="1.3.5"; sha256="07h3ah2z2nnwcs63mhlxvli9a9fsv9pnjbl5d0khgwpn7w4gmyxj"; depends=[corrplot crayon data_table DescTools FNN foreach ggplot2 ggpubr ranger]; }; - miceadds = derive2 { name="miceadds"; version="3.8-9"; sha256="1n5blg3vbl9sknwp9y123m597cvp6l1c25fyxqdbamw7b8ymzncp"; depends=[mice mitools Rcpp RcppArmadillo]; }; + miceadds = derive2 { name="miceadds"; version="3.10-28"; sha256="099kadyaj57hk1zfkzgs4ncdc5waa2lp7pq8mjm20zgmjrqrx73h"; depends=[mice mitools Rcpp RcppArmadillo]; }; micemd = derive2 { name="micemd"; version="1.6.0"; sha256="1n8kzdf2713dw9mbzvbwl0gknzi9amdqnabfw2wmb70gsvma3f48"; depends=[abind digest jomo lme4 MASS Matrix mice mvmeta mvtnorm nlme]; }; michelRodange = derive2 { name="michelRodange"; version="1.0.0"; sha256="1pykqb9hmpvn77k0vhfh36iyhamz9h5kpswq3ql31h9nknfy3ixi"; depends=[magrittr]; }; micompr = derive2 { name="micompr"; version="1.1.0"; sha256="0qsxs35mmqx8hpszcb1z87xczh0vh0m0plqrj22af5mjjvif76n9"; depends=[]; }; microPop = derive2 { name="microPop"; version="1.5"; sha256="1gikp20n2b50fkybbg2hmlfjdcm0imjwygjsjnyv3wrjzypm2i78"; depends=[deSolve]; }; microbats = derive2 { name="microbats"; version="0.1-1"; sha256="1mahvblaiwg1xk2s34wd1ic8ddc9lh6g0azik2pd97bsf0krkyw8"; depends=[]; }; microbenchmark = derive2 { name="microbenchmark"; version="1.4-7"; sha256="1xl4m4yl4h2zcjiz8wsa7f3sh55qg2xr3sgpvz18rlix6b3173r6"; depends=[]; }; + microcontax = derive2 { name="microcontax"; version="1.2"; sha256="004g979hyg0asbah7hxr445fidil4ibw1b8pqpjdbgmpm1qgvw7y"; depends=[microseq]; }; microdemic = derive2 { name="microdemic"; version="0.5.0"; sha256="1i89vq3b7gq0pdh8hf92jzh0fyghhhxf8hmb72naz0vpl6xa301a"; depends=[crul data_table httpcode jsonlite tibble]; }; microhaplot = derive2 { name="microhaplot"; version="1.0.1"; sha256="0g15g7d19yz11nn2g0h8h2m8k1cvmpryz72pnalgv5yi58md5l5i"; depends=[dplyr DT ggiraph ggplot2 gtools magrittr scales shiny shinyBS shinyWidgets tidyr]; }; micromap = derive2 { name="micromap"; version="1.9.3"; sha256="1iciwy0kcg4qa0xc4gkqcilq33ac1s184vw13cbbkv0d1b5cgkgv"; depends=[ggplot2 maptools RColorBrewer rgdal sp]; }; micromapST = derive2 { name="micromapST"; version="1.1.1"; sha256="15ch132x3wnpf7rmy25nah7iyfxfk90p7lvavqjhrnavhjsfxbxx"; depends=[labeling RColorBrewer stringr]; }; - micropan = derive2 { name="micropan"; version="2.0.1"; sha256="1hij7cqrcqlxfr5mbambi32f59zrrfi28fhaaqrlf0lkh4jnfbnj"; depends=[dplyr igraph microseq rlang stringr tibble]; }; + micropan = derive2 { name="micropan"; version="2.1"; sha256="16zs6sqi2c5lwzhd5gbyddp8q4gx5r5sg0pbpk7924i8x4hh081h"; depends=[dplyr igraph microseq rlang stringr tibble]; }; microplot = derive2 { name="microplot"; version="1.0-42"; sha256="062dd4k6ryyl44lwbc2qgdsfcs1fiv9j2n6lx9driw6vng533b6q"; depends=[cowplot flextable ggplot2 HH Hmisc htmltools lattice officer]; }; microsamplingDesign = derive2 { name="microsamplingDesign"; version="1.0.7"; sha256="1cd9h331gvapa6p72mlyddrixb0jzka7q10i78fmpc2mcdl7alw0"; depends=[abind deSolve devtools ggplot2 gridExtra gtools knitr MASS matrixcalc matrixStats plyr Rcpp RcppArmadillo readr reshape2 shiny stringr]; }; - microseq = derive2 { name="microseq"; version="2.0"; sha256="1i4xw7v5c3fzkz4gbcdp35idj1sm47gc4fmjwjsk9czi8nh591wr"; depends=[dplyr Rcpp rlang stringr tibble]; }; + microseq = derive2 { name="microseq"; version="2.1.2"; sha256="04xsvwwbpxsqdg31w2kgydrnyxbw611blgwgly8cqvny74jgkkcg"; depends=[data_table dplyr Rcpp rlang stringr tibble]; }; microsynth = derive2 { name="microsynth"; version="2.0.13"; sha256="1ijv7kbxl087m0wzdbzl9p74116dfwid03dlamy4b1l308azc4ag"; depends=[boot kernlab LowRankQP MASS nleqslv pracma survey]; }; midas = derive2 { name="midas"; version="1.0.1"; sha256="1alqxk23651jnkg0xn4rpvk71z5rhvx3y0wjrgkw2qw95s7jjn72"; depends=[shiny xml2]; }; + midasml = derive2 { name="midasml"; version="0.0.5"; sha256="1y591m0h1872i3bg40fzy5vgqv92v42sshb5pq0rbddp94kb4fm8"; depends=[doSNOW foreach lubridate optimx quantreg Rcpp RcppArmadillo]; }; midasr = derive2 { name="midasr"; version="0.7"; sha256="02kjyzbznmy0362ambnnh8vc7ywbgikk3n7705sww9p0k0pywrrx"; depends=[forecast Formula MASS Matrix numDeriv optimx quantreg sandwich texreg zoo]; }; midastouch = derive2 { name="midastouch"; version="1.3"; sha256="1pjzcf0hjfhr5p0la8pz1njw7bhfrcrzpqfsdqk2z5c6dbh4awzq"; depends=[]; }; - midrangeMCP = derive2 { name="midrangeMCP"; version="2.1"; sha256="0blvwyvvv5gvnwnlawmqyj00ziwchxk9f39f5nc8d066pwh3mcw4"; depends=[gWidgets gWidgetsRGtk2 pacman SMR writexl xtable]; }; - migest = derive2 { name="migest"; version="1.8.1"; sha256="12gk1ip1kw3x35bazxqqjf1drbs2h7kpgzbh5psd6ppphj81dzjg"; depends=[dplyr magrittr mipfp purrr stringr tidyr]; }; + midrangeMCP = derive2 { name="midrangeMCP"; version="3.1"; sha256="1d5x86xzs3b0g7ibg6i9dwg4w5kgjas3i2llrhvjk6h3w9knm0m4"; depends=[SMR tkrplot writexl xtable]; }; + migest = derive2 { name="migest"; version="1.8.2"; sha256="19rsh2hff003rpql1fxhykhdmsmkdyx28y9ld8p1686spy6m4n74"; depends=[dplyr magrittr purrr stringr tibble tidyr]; }; migration_indices = derive2 { name="migration.indices"; version="0.3.0"; sha256="0h0yjcj70wzpgrv3wl1f2h2wangh1klsllq0i0935plgzw736mwd"; depends=[calibrate]; }; + migrbc = derive2 { name="migrbc"; version="2.0.9"; sha256="1nbxdm70a9lvbp4sw78719hdpbqnziw1y7r4xk8i390q2c195am1"; depends=[dplyr futile_logger lubridate Rcpp stringr]; }; migui = derive2 { name="migui"; version="1.1"; sha256="1qchjsc7ff2b6s9w6ncj9knjv6pyp90jd4jxljn2rr1ix1gc45za"; depends=[arm gWidgets2 mi]; }; - miic = derive2 { name="miic"; version="1.0.3"; sha256="088szscn9v9279w86mypxphp3avv17iijvcvlckx3h1ka75lkx27"; depends=[bnlearn igraph MASS ppcor Rcpp]; }; milorGWAS = derive2 { name="milorGWAS"; version="0.3"; sha256="1z44sbs3lmrx32wagk5rr3rc2k8iqq860fz0bi983llmgmhaqdxn"; depends=[gaston Rcpp RcppEigen]; }; milr = derive2 { name="milr"; version="0.3.0"; sha256="0z4d22fd6gd3zbi973vws9jqyh4c4m4i4ajcpxv934vxmbj0cma9"; depends=[glmnet numDeriv pipeR Rcpp RcppArmadillo RcppParallel]; }; mime = derive2 { name="mime"; version="0.9"; sha256="107sqarmyhxlch5nrg796i5z03p9mshskisiq2fm628ajk99gkrc"; depends=[]; }; mimi = derive2 { name="mimi"; version="0.2.0"; sha256="1ig34qd37my74nmlv3jcfrj7cnd55alxpf2flf2sssk2ws1y56xh"; depends=[data_table doParallel FactoMineR foreach glmnet rARPACK softImpute]; }; - mimsy = derive2 { name="mimsy"; version="0.4.3"; sha256="1mj0g2j0fw3j36r59yad7bfqhpjl1mjlca9fmmvxfjr878b4ld5g"; depends=[dplyr lubridate magrittr openxlsx]; }; + mimsy = derive2 { name="mimsy"; version="0.6.2"; sha256="01dy1fryrgq07jdfnxcnks97h0gq632dvqk7hnfs0f5fnx0k0vvf"; depends=[dplyr lubridate magrittr openxlsx]; }; minMSE = derive2 { name="minMSE"; version="0.3.1"; sha256="0xzd2hw7ga5fi54d35vr9n3sbnp6acak27fl4lv089sn1ig6s95p"; depends=[MASS]; }; + mindicador = derive2 { name="mindicador"; version="0.1.5"; sha256="0y829cmv4sp3s6ygjy1y9ddh2pqlwi0qmndv43s0dhmjick88yyz"; depends=[crul data_table digest jsonlite memoise xts]; }; mindr = derive2 { name="mindr"; version="1.2.3"; sha256="1slglva5ipbzj748k7rxvlw6g2iqdkvyf8qnplnzcjc2qsjljd1q"; depends=[data_tree htmlwidgets jsonlite knitr]; }; mineCitrus = derive2 { name="mineCitrus"; version="1.0.0"; sha256="031nfhrsc5rlqls3vyrk18lx0pd4ssdk96cmfr4ifaciz0rgv8h2"; depends=[ggplot2]; }; mined = derive2 { name="mined"; version="1.0-2"; sha256="1py6gylya8dhmxcyfrcwbwc5q226m041rs3cmj4q0dhqy8iy2zsw"; depends=[Rcpp RcppEigen]; }; minerva = derive2 { name="minerva"; version="1.5.8"; sha256="0k4ww3qfqrsnkccxk9dyq39xrc42g8gvj5g8drglg4fyci7jfs9h"; depends=[Rcpp RcppArmadillo]; }; - miniCRAN = derive2 { name="miniCRAN"; version="0.2.12"; sha256="1jyrx86y8qdb3xdfpj812k0v492z3i6dnwy761qslwmn15xx8845"; depends=[assertthat httr igraph XML]; }; + miniCRAN = derive2 { name="miniCRAN"; version="0.2.13"; sha256="1pi474kphicflr45rbvy4dha7wjiq9zy39dyagf9xmwp6y5qivsi"; depends=[assertthat httr igraph]; }; miniGUI = derive2 { name="miniGUI"; version="0.8-1"; sha256="0qb2fbkjwzn909yrk89d4951bwf8n05i0s265l8v2d4lpns9hc2i"; depends=[]; }; miniMeta = derive2 { name="miniMeta"; version="0.2"; sha256="03r6xwcgchw42irqr8jy5hsbv8brk6f77h4zi9qhhz3zmkryjbw2"; depends=[colourpicker jsonlite markdown meta metafor readxl rhandsontable shiny shinyjs shinyWidgets WriteXLS]; }; miniUI = derive2 { name="miniUI"; version="0.1.1.1"; sha256="1h5h2sc57h95d6bsgs95l26911g38hvjc1v50bc31xl9689l2as5"; depends=[htmltools shiny]; }; + minidown = derive2 { name="minidown"; version="0.0.1"; sha256="13f2liyq3yqc6n066dkbjc08viiirn4ksnpjcs1crmn8pkdmbl3s"; depends=[htmltools rmarkdown]; }; minimalRSD = derive2 { name="minimalRSD"; version="1.0.0"; sha256="1p1jpi8lnv952k4c1wjgbgpb0hv4zg0f9qrd43cx0caibkqvhzf7"; depends=[]; }; minimap = derive2 { name="minimap"; version="0.1.0"; sha256="0y5yzic9pwpzs01gnl82syankijcjp85n22jn5zda0bp3y01r53r"; depends=[]; }; minimax = derive2 { name="minimax"; version="1.0"; sha256="1g0d9q5h1avbb0yg7ajw5330820i3n5cgkpsif754l4j3ikya8p3"; depends=[]; }; @@ -10381,9 +10770,10 @@ in with self; { mipfp = derive2 { name="mipfp"; version="3.2.1"; sha256="1gxazpg81vj5dywpb6jb29188jw28qil6pfygawa7znnjn3k5ca6"; depends=[cmm numDeriv Rsolnp]; }; mipred = derive2 { name="mipred"; version="0.0.1"; sha256="0kijn2xj0dh28rm2sjgd8j1a3c5avc3fjfvvcmzfasvxqdjflv6j"; depends=[mice]; }; miraculix = derive2 { name="miraculix"; version="0.9.20"; sha256="0s5r7ikym3s85706wznfc3lh3ap95pv1p2796bi1n19ivd671myc"; depends=[RandomFieldsUtils]; }; - mirt = derive2 { name="mirt"; version="1.32"; sha256="14xijqfyvhp7272n8h89kayi7va3cn2j02gw0fdxivfjlbqa03d2"; depends=[dcurver Deriv GPArotation lattice mgcv Rcpp RcppArmadillo vegan]; }; - mirtCAT = derive2 { name="mirtCAT"; version="1.9.3"; sha256="1yd03rkviqxl9rsqnny3fgn2rj0hss49nav11b9w4np8lv9zkwgh"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; - misaem = derive2 { name="misaem"; version="0.9.2"; sha256="0awn0dvriycgmrx31ibckwjm2cq1wxrqjjjaq0bjgjsl37f4xnkk"; depends=[MASS mvtnorm]; }; + mirt = derive2 { name="mirt"; version="1.32.1"; sha256="023mik3s61f452v6kk639jxp53pzg1qg2aar7azfd3jx4szppz3m"; depends=[dcurver Deriv GPArotation lattice mgcv Rcpp RcppArmadillo vegan]; }; + mirtCAT = derive2 { name="mirtCAT"; version="1.10"; sha256="1wf4m4m3lyd57hy0v5jsci2k8cgzl087svpccmhxvp1chfjn7iw2"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; + mirtjml = derive2 { name="mirtjml"; version="1.4.0"; sha256="1zvm8acywpzi87lz0hpxmr8c9kyqkbx0490q3vlwxd90ffcdp9ml"; depends=[GPArotation Rcpp RcppArmadillo]; }; + misaem = derive2 { name="misaem"; version="1.0.0"; sha256="0vylcfqwngbyli88ba63nxf2gqlcbfmjyrghkz34zdch7cdz75rk"; depends=[MASS mice mvtnorm norm]; }; misc3d = derive2 { name="misc3d"; version="0.8-4"; sha256="0qjzpw3h09qi2gfz52b7nhzd95p7yyxsd03fldc9wzzn6wi3vpkm"; depends=[]; }; miscF = derive2 { name="miscF"; version="0.1-5"; sha256="0g6wk2zxqq6j949hnbvwmfd72y25zjfbrfrfxsj21q84w41fgjkb"; depends=[MASS MCMCpack mvtnorm R2jags]; }; miscFuncs = derive2 { name="miscFuncs"; version="1.3"; sha256="0wn7i9656km53wlml360qgpzqxlv1jsjnh4swhqgf5dyjva8i141"; depends=[mvtnorm roxygen2]; }; @@ -10396,22 +10786,22 @@ in with self; { miselect = derive2 { name="miselect"; version="0.9.0"; sha256="0dfqni7r5zwdvwmrmvqhycmxhazivz6vnz2ccjy0hyfad29g0v7s"; depends=[]; }; mispr = derive2 { name="mispr"; version="1.0.0"; sha256="166piax3f7di8h0i07fbdx45lxz1p47j378v6yl6zdc3525adpjx"; depends=[e1071 MASS penalized]; }; misreport = derive2 { name="misreport"; version="0.1.1"; sha256="1f78zcw4cg51mjvflhwd64hip2gj8x9ng1mhh4w43yv3x8hmbd6h"; depends=[mvtnorm numDeriv VGAM]; }; - missCompare = derive2 { name="missCompare"; version="1.0.1"; sha256="0f173463dsr2xcj228aysfnabrdv8i2c9sprmd2jndn65dv8hhsz"; depends=[Amelia data_table dplyr ggdendro ggplot2 Hmisc ltm magrittr MASS Matrix mi mice missForest missMDA pcaMethods plyr rlang tidyr VIM]; }; - missDeaths = derive2 { name="missDeaths"; version="2.5.1"; sha256="1vj1d4r2ikc7ppm5kgivc7bj81qkyymrs11cxj1gdll6xyfn1g1d"; depends=[cmprsk MASS mitools Rcpp relsurv rms survival]; }; + missDeaths = derive2 { name="missDeaths"; version="2.6"; sha256="0biynl5n04yz0dr5r4py4a3f5l9faaxfb1bhy2pk6k8l2ayl060q"; depends=[cmprsk MASS mitools Rcpp relsurv rms survival]; }; missForest = derive2 { name="missForest"; version="1.4"; sha256="0y02dhrbcx10hfkakg5ysr3kpyrsh2d9i5b0qzhj9x5x0d5q11gp"; depends=[foreach itertools randomForest]; }; - missMDA = derive2 { name="missMDA"; version="1.16"; sha256="0c5a9ygvvx2qi9hgbwnhl4hcljy2b4hi2x3py2qyay9bp0zvchxm"; depends=[doParallel FactoMineR foreach mice mvtnorm]; }; - missMethods = derive2 { name="missMethods"; version="0.1.0"; sha256="0c2bzi1q8mqcma47j8l6yf24figf493rn671svrrsfz38gdirmpv"; depends=[]; }; + missMDA = derive2 { name="missMDA"; version="1.17"; sha256="1bpl55kwkwnq4d5dy6q2ckr9074viirmc2x9k9mf83nky8z0pmz6"; depends=[doParallel FactoMineR foreach ggplot2 mice mvtnorm]; }; + missMethods = derive2 { name="missMethods"; version="0.2.0"; sha256="0rsx7fdg0k8ajpj81ybl2jc9s8sprc2si6zx7mkvcqgw9iacrdik"; depends=[]; }; missRanger = derive2 { name="missRanger"; version="2.1.0"; sha256="06ic99zg91ikzvmwbj05ma46rc4ayfwylv8cnj21sbr5nxw0qpz9"; depends=[FNN ranger]; }; missSBM = derive2 { name="missSBM"; version="0.2.1"; sha256="00jxj1f7hr78srlm49finf9j2q14y1cl66rwdkm1i81l8db5fvcp"; depends=[ape corrplot ggplot2 igraph magrittr nloptr R6 Rcpp RcppArmadillo]; }; - missingHE = derive2 { name="missingHE"; version="1.3.2"; sha256="0i4af7479nnrbljbianwq4r6f0gs80y29mq9chykjyrbh0fpj15n"; depends=[bayesplot BCEA coda ggmcmc ggplot2 ggthemes gridExtra loo mcmcplots mcmcr R2jags]; }; + missingHE = derive2 { name="missingHE"; version="1.4.1"; sha256="1bxpp88rwnv4fc9lm606cczj1dx63p507sqsr71dblgsfw3aw7xy"; depends=[bayesplot BCEA coda ggmcmc ggplot2 ggpubr ggthemes gridExtra loo mcmcplots mcmcr R2jags]; }; mistat = derive2 { name="mistat"; version="1.0-5"; sha256="1vyx918b7iv1wcnk23bnlxljwy0hglpdx5drhrs5qcd45f6jrghc"; depends=[]; }; mistr = derive2 { name="mistr"; version="0.0.3"; sha256="00pq56zlp27wsa88830pwqx1s2m3x7klzaw96jan8mp3r7hwskr4"; depends=[bbmle]; }; mistral = derive2 { name="mistral"; version="2.1.0"; sha256="1cr79p8q82lpj9d0y6q24xmfkxmnlqv8ivkd0baj7fxfb1nb8sak"; depends=[DiceKriging doParallel e1071 emoa foreach ggplot2 iterators Matrix mvtnorm quadprog]; }; - misty = derive2 { name="misty"; version="0.3.0"; sha256="1yiiqdpl5bfgy4y41195a5fvbbx1v1g5idw4swbadzz2sxn66w57"; depends=[haven lavaan readxl]; }; + misty = derive2 { name="misty"; version="0.3.2"; sha256="17fqkxl9kmkjzl6axgrgk17j5ah8l1f29mf399ak3vhaccvblaqi"; depends=[haven lavaan lme4 readxl]; }; mitml = derive2 { name="mitml"; version="0.3-7"; sha256="0yqyxkyi1kmv5k63wxj5kkg5g8igk1axk2csb4xhj6wz0p89dxy6"; depends=[haven jomo pan]; }; mitools = derive2 { name="mitools"; version="2.4"; sha256="0c2x2n1p53lcw0vx4vmy5j7m2f95i7g2iwbryl89imr99rvz617j"; depends=[DBI]; }; mix = derive2 { name="mix"; version="1.0-10"; sha256="0z16ddbh79kqxi64bl1h2sd8anpgc48n9d1nyr2zlln39nhv8w8g"; depends=[]; }; - mixAK = derive2 { name="mixAK"; version="5.2"; sha256="1fgyky6giscldrk13wjbkk26lbg6jzn6xzxm4wy4bjgbfmbar42m"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; + mixAK = derive2 { name="mixAK"; version="5.3"; sha256="12vhg3qaz39hcc581gn0wfmcxj1yhggcsqic4ngy4gpmrg27yls0"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; + mixAR = derive2 { name="mixAR"; version="0.22.4"; sha256="1pd6885113i9d2vwxmcvls6q8lpcjbajm88s5zvdrm0rqri5kahk"; depends=[BB combinat e1071 fGarch gbutils MCMCpack mvtnorm permute Rdpack timeDate]; }; mixEMM = derive2 { name="mixEMM"; version="1.0"; sha256="0344ay1avi37kvh5w9bknayx67yh7rflj6zhw68d2888v7cbghjy"; depends=[]; }; mixIndependR = derive2 { name="mixIndependR"; version="0.2.1"; sha256="0m858jjspkacfyxikisqij4d5ipz6fklgcczxzh7i4kv248p43w3"; depends=[stringr]; }; mixKernel = derive2 { name="mixKernel"; version="0.4"; sha256="0bqa4inim7819pl3dr2kfzdvv7phqkjqfx3zal8mmxcjpkpxs4mf"; depends=[corrplot ggplot2 LDRTools Matrix mixOmics phyloseq psych quadprog reticulate vegan]; }; @@ -10429,7 +10819,7 @@ in with self; { mixedsde = derive2 { name="mixedsde"; version="5.0"; sha256="0ss1ng4nx91gxj85wxxfyh9ljxsj3ag6lsj1a5d2815p9jzl7dsv"; depends=[MASS moments plot3D sde]; }; mixexp = derive2 { name="mixexp"; version="1.2.5"; sha256="0nbf10xhrr51rb1b2apcj4p3ci8xbi7flgz500ar3mxh8h8l74sq"; depends=[daewr gdata lattice]; }; mixggm = derive2 { name="mixggm"; version="1.0"; sha256="1wiiayld7rwp3mwz93zizrv0dzw02mqrzprc4z6c4jj25c8pypw5"; depends=[foreach GA mclust memoise network Rcpp RcppArmadillo]; }; - mixl = derive2 { name="mixl"; version="1.1.2"; sha256="03ylzl5fyypyxhjfhbnhcswmq2cngzspvkzn8bnlgkd496qr14j8"; depends=[maxLik numDeriv randtoolbox Rcpp readr sandwich stringr]; }; + mixl = derive2 { name="mixl"; version="1.2.2"; sha256="05xljpr09dmqbp6rm9bj84677sh8n7v718xq0g16d2z1lazll3ri"; depends=[maxLik numDeriv randtoolbox Rcpp readr sandwich stringr]; }; mixlink = derive2 { name="mixlink"; version="0.1.5"; sha256="0ywgrcplhspc0x5fniw52xqz20y7j9mwgy4ky8lv3vii659mr52m"; depends=[mvtnorm numDeriv Rcpp RcppGSL]; }; mixlm = derive2 { name="mixlm"; version="1.2.4"; sha256="0jwz918qnz1p71y82ayrgir9rpij8zk3jgmn63nq5xrlf0jbjcdd"; depends=[car leaps multcomp pls pracma]; }; mixmeta = derive2 { name="mixmeta"; version="1.0.8"; sha256="1wx95pgd096d359n5mrl98hpwc2c1r2jw3pzvilkawx0y8lw68na"; depends=[]; }; @@ -10437,22 +10827,21 @@ in with self; { mixreg = derive2 { name="mixreg"; version="0.0-6"; sha256="04g863yxrlj0wqsmzzxph5110g3gjk094r59zzk0b9r89m8vhpsl"; depends=[]; }; mixsep = derive2 { name="mixsep"; version="0.2.1-2"; sha256="1ywwag02wbx3pkd7h0j9aab44bdmwsaaz0p2pcqn1fs3cpw35wa2"; depends=[MASS RODBC tcltk2]; }; mixsmsn = derive2 { name="mixsmsn"; version="1.1-7"; sha256="1xw8bxkivp50ax0ygsravmzmksdqqg9fdm3hwpl39ikhj0cpa7zr"; depends=[mvtnorm]; }; - mixsqp = derive2 { name="mixsqp"; version="0.3-17"; sha256="0dmk5xpgq55bwdjfrnv6frfx708frszscx03h8l9cdsj3l1d002n"; depends=[irlba Rcpp RcppArmadillo]; }; + mixsqp = derive2 { name="mixsqp"; version="0.3-43"; sha256="1qics04w0swyp216d6g8dmsph8q2kpadpacp66h2qih3521js12q"; depends=[irlba Rcpp RcppArmadillo]; }; mixtNB = derive2 { name="mixtNB"; version="1.0"; sha256="0lqbm1yl54zfs0xcmf3f2vcg78rsqyzlgvpydhmhg7x6dkissb22"; depends=[]; }; mixtools = derive2 { name="mixtools"; version="1.2.0"; sha256="08whic8hmmzi55b7azwj11l2x5r9s5qbyrv7s9jr08156vqkw0zg"; depends=[kernlab MASS segmented survival]; }; mixtox = derive2 { name="mixtox"; version="1.3.2"; sha256="0mdnp1yrcxvan5l7jj91s41vq5y1kdnkhhinqrklmg4ph5f29dmq"; depends=[minpack_lm]; }; mixture = derive2 { name="mixture"; version="1.5"; sha256="1ahr8jw93xnd5hmy3h4sr209ql7gmkwbvnnfmiplbpc17czqgcn4"; depends=[]; }; mize = derive2 { name="mize"; version="0.2.3"; sha256="1rc3mhcwidmfbkfyxwldm9hg25lh7a81jlj2zv45vsj5hbrmvk6c"; depends=[]; }; - mizer = derive2 { name="mizer"; version="2.0.0"; sha256="152bjz37b1sjg1x9sl6286hisk2qpcckfh4gxw1wbdn7kh99law1"; depends=[assertthat deSolve dplyr ggplot2 plotly plyr progress Rcpp reshape2]; }; + mizer = derive2 { name="mizer"; version="2.0.3"; sha256="1m7gh9gi0y0492dlcyr283r6ccw5v0yfikbby8jlmg0d6lq9jj2s"; depends=[assertthat deSolve dplyr ggplot2 plotly plyr progress Rcpp reshape2]; }; mkde = derive2 { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[raster Rcpp sp]; }; - mkin = derive2 { name="mkin"; version="0.9.49.11"; sha256="1palzxv5vyk5hnc09mwja3xz42r3mqpqlcn5rc8kxkm4kg0z3v4c"; depends=[deSolve inline lmtest nlme numDeriv pkgbuild purrr R6]; }; + mkin = derive2 { name="mkin"; version="0.9.50.2"; sha256="10c729r9q896ryjbjv2lccsajlrz4nyf28ahpzgkagl9rcwwwhiz"; depends=[deSolve inline lmtest nlme numDeriv pkgbuild purrr R6]; }; mknapsack = derive2 { name="mknapsack"; version="0.1.0"; sha256="1kzmx7d512681a4hjirfgcd7a8rvndb4da66p16gms5nnxzsby9c"; depends=[assertthat data_table lpSolve]; }; mkssd = derive2 { name="mkssd"; version="1.1"; sha256="1qqzy6fn6sc3lxahc19hzzf1hzxsyvxqi7npynw0vkknlrvh2ijp"; depends=[]; }; mlPhaser = derive2 { name="mlPhaser"; version="0.01"; sha256="1s2mqlnbcjdkx0ghvr2sw9rzggqa4jy2vzi9vbyqkh6795lgck6n"; depends=[]; }; mlVAR = derive2 { name="mlVAR"; version="0.4.4"; sha256="0ib566qygm28lqhr3w9vzfxnpsmazlipzrfsdm3cw21wpz2lvxcr"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph]; }; mlapi = derive2 { name="mlapi"; version="0.1.0"; sha256="023vk5bp8cjcq88sapkl87kdxr92bay1dyxl6xirnyj699pyj51k"; depends=[Matrix R6]; }; mlbench = derive2 { name="mlbench"; version="2.1-1"; sha256="1rp035qxfgh5ail92zjh9jh57dj0b8babw3wsg29v8ricpal30bl"; depends=[]; }; - mlbgameday = derive2 { name="mlbgameday"; version="0.2.0"; sha256="05b8jdrcfrh6rli9inkgizkmmj9jw0cypc5r4ckqqbrfj00zfi3q"; depends=[DBI doParallel dplyr foreach iterators magrittr purrr stringr tidyr xml2]; }; mlbstats = derive2 { name="mlbstats"; version="0.1.0"; sha256="1pfsc1pc5986gykx8l6afahszhaj4940l8g33fdxyy7194kbcz70"; depends=[]; }; mldr = derive2 { name="mldr"; version="0.4.3"; sha256="07lbxpydz78fya11bl3l1ckhbps3nx43ddh3z09ygg70jjbdhxwq"; depends=[circlize shiny XML]; }; mldr_datasets = derive2 { name="mldr.datasets"; version="0.4.2"; sha256="0zyfv8xy5yik0k3j0kf9r43xrvj528qzdb1v74sfi24vim6k6503"; depends=[]; }; @@ -10460,53 +10849,53 @@ in with self; { mleap = derive2 { name="mleap"; version="1.0.0"; sha256="1abdab96wgybfgfbcai657hrbkn3kprxqw3ww415vpg2xhi8p905"; depends=[digest fs jsonlite purrr rJava sparklyr tibble]; }; mlearning = derive2 { name="mlearning"; version="1.0-0"; sha256="0r8xfaxw83s2r27b8x5qd0k4r5ayxpkafzn9b1a0jvsr87i6520r"; depends=[class e1071 ipred MASS nnet randomForest]; }; mlegp = derive2 { name="mlegp"; version="3.1.7"; sha256="1q0mxvr23qcxvf8k2cgs4m8yfp1gbkmprp964w8viy30japmx16l"; depends=[]; }; - mlergm = derive2 { name="mlergm"; version="0.5"; sha256="145004r8xihphsng8pna430a8rqg0ibqx92jwyjkn7hzpx17p7xf"; depends=[cowplot ergm GGally ggplot2 lpSolve Matrix network plyr reshape2 sna stringr]; }; + mlergm = derive2 { name="mlergm"; version="0.6"; sha256="10pg2jbh4g764hl2wzscml5lrnw1hxbsj6ggyj2dnf6igz7naaxh"; depends=[cowplot ergm GGally ggplot2 lpSolve Matrix network plyr reshape2 sna stringr]; }; mleur = derive2 { name="mleur"; version="1.0-6"; sha256="0mddphq3b6y2jaafaa9y41842kcaqdl3dh7j4pva55q2vcjcclj7"; depends=[fGarch lattice stabledist urca]; }; mlf = derive2 { name="mlf"; version="1.2.1"; sha256="09ihnibpknpp26hdlbxyr99yz7z0n8qpsjs5aq3zngng0yh3wdn9"; depends=[]; }; - mlflow = derive2 { name="mlflow"; version="1.8.0"; sha256="03pdn05zgiz8plgf69nw4ji1fkzphampn7pk7ljf6w5dssznjja9"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr reticulate rlang swagger tibble withr xml2 yaml zeallot]; }; + mlflow = derive2 { name="mlflow"; version="1.10.0"; sha256="028ckirgv8ncqgfyvydyz2llhlgdlidm5xz326akqxiq44j7j55m"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr reticulate rlang swagger tibble withr xml2 yaml zeallot]; }; mlgt = derive2 { name="mlgt"; version="0.16"; sha256="1nvdq6mvgr39ikkf73aggsb6pmbw132injj8fdkr8hgcmwm6lgd9"; depends=[seqinr]; }; mlica2 = derive2 { name="mlica2"; version="2.1"; sha256="0c3m1zd9x99n6lw12hfzmd59355z51xa8rhg1h7qwfn9p86r826f"; depends=[]; }; mlmRev = derive2 { name="mlmRev"; version="1.0-8"; sha256="0ln4nazhc1prnlmvhfzhx268vx3klb0xnz1nsiwh0pwyskskyzym"; depends=[lme4]; }; - mlma = derive2 { name="mlma"; version="4.0-1"; sha256="0pk2h4m74r95dfkqzliixi6z1rwdfc6gbz8c3162y22m919f00vc"; depends=[car gplots lme4]; }; + mlma = derive2 { name="mlma"; version="5.1-0"; sha256="0y1xyjxr8gx67096sifam4ls5qrgvxvnh1rrg6myyrdzgxf9c0sa"; depends=[abind car gplots lme4]; }; mlmc = derive2 { name="mlmc"; version="1.0.0"; sha256="01h7w0ajyg3bccynlpbi3yjpy089wczbfbajpg6yw5v4dppw7k7a"; depends=[ggplot2 Rcpp]; }; mlmi = derive2 { name="mlmi"; version="1.0.0"; sha256="08sm836y40af3jd5gcl5pnyv1gqpx4ngkkw4xfp82h1j4yk47sy5"; depends=[cat gsl MASS Matrix mix norm]; }; mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.6"; sha256="14xp8k7sww1skyw5l2006gpaw2c6yrri5nmfx4yav4vqdlhcj2k1"; depends=[coxme Matrix multcomp multcompView sommer]; }; mlmmm = derive2 { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; }; - mlogit = derive2 { name="mlogit"; version="1.0-3.1"; sha256="034vymf296abpajkic303j0x4mak62m8iav86k3d3g6hy3c03dp4"; depends=[Formula lmtest MASS Rdpack statmod zoo]; }; + mlogit = derive2 { name="mlogit"; version="1.1-0"; sha256="19ibklkjc1cqi7fyi8hsmzb317c8pxmh9689zpyfgwc39cwb48j6"; depends=[dfidx Formula lmtest MASS Rdpack statmod zoo]; }; mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-6"; sha256="1wl8ljh6rr1wx7dxmd1rq5wjbpz3426z8dpg7pkf1x9wr94a2q25"; depends=[abind BMA maxLik]; }; mlr = derive2 { name="mlr"; version="2.17.1"; sha256="0fwjl5dy516vrh2lx5rgps85q0jz8ka5dx61bz7lfxk21k8bjw8b"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; }; - mlr3 = derive2 { name="mlr3"; version="0.2.0"; sha256="049wabal63560k0mlhn0rwydd50kjwlz56xygyqd18hhfjcnf6m1"; depends=[backports checkmate data_table digest lgr mlbench mlr3measures mlr3misc paradox R6 uuid]; }; - mlr3data = derive2 { name="mlr3data"; version="0.1.0"; sha256="0cdicfrrmba87adkcnpzm9gkcspjskqsbs8xryj1d0c48lzws7ab"; depends=[]; }; + mlr3 = derive2 { name="mlr3"; version="0.5.0"; sha256="0prrc8v60wf4493srshwj87ll6c2g582k6v6ax3mir1dsgrrphyf"; depends=[backports checkmate data_table digest future_apply lgr mlbench mlr3measures mlr3misc paradox R6 uuid]; }; + mlr3data = derive2 { name="mlr3data"; version="0.2.0"; sha256="01bgbzszplay0miphlfxw6xbr0kgj2919zgfnd1zq21fm5b7qzi5"; depends=[]; }; mlr3db = derive2 { name="mlr3db"; version="0.1.5"; sha256="09hins00pc569vz26mkyg3736vhl01szl8hbwp2vyrh3mdn21c9m"; depends=[backports checkmate data_table digest dplyr mlr3 R6]; }; - mlr3filters = derive2 { name="mlr3filters"; version="0.2.0"; sha256="1dps9v4w82qnhvlrshwpaqppjmy405syp4qdirm456ydfw2gywcy"; depends=[backports checkmate data_table mlr3 mlr3misc paradox R6]; }; + mlr3filters = derive2 { name="mlr3filters"; version="0.3.0"; sha256="1yr3mdjv9yg9xgf3hq0p2ymhrphfckjxmgda9cyv3d0p6hgvx9ll"; depends=[backports checkmate data_table mlr3 mlr3misc paradox R6]; }; mlr3learners = derive2 { name="mlr3learners"; version="0.2.0"; sha256="1r9f31wlhqwpslb2sgj6x3akggqdmnglb3s44zfhy6mqi1fwdgxn"; depends=[data_table mlr3 mlr3misc paradox R6]; }; - mlr3measures = derive2 { name="mlr3measures"; version="0.1.3"; sha256="1hvhpshmdd76136srndd60d5xijpil5daf392y9lalqq0if6903d"; depends=[checkmate]; }; - mlr3misc = derive2 { name="mlr3misc"; version="0.2.0"; sha256="0gynix0l0dzx6zjkw4fmb1rcyfp5vf4hvszf4ny2aqv3pggb03a8"; depends=[backports checkmate data_table R6]; }; - mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.1.3"; sha256="0qkhd4gcfh3higz0zqgrblxj70pszg8xb6l5flwp08hlwj1cw44j"; depends=[backports checkmate data_table digest mlr3 mlr3misc paradox R6 withr]; }; - mlr3proba = derive2 { name="mlr3proba"; version="0.1.5"; sha256="1vnykzqbd27qaknxkcji17ld81z24hxwiw9d04m68vb8v62fkrag"; depends=[checkmate data_table distr6 mlr3 mlr3misc mlr3pipelines paradox R6 survival]; }; + mlr3measures = derive2 { name="mlr3measures"; version="0.2.0"; sha256="1dw8w1g92zq66daf1argl27983yfl6ijdl4dy2ihc05nld8n860s"; depends=[checkmate]; }; + mlr3misc = derive2 { name="mlr3misc"; version="0.5.0"; sha256="0pyk3hgmrrkgza840pwi2yfk06xs0qqp481wwf62knzjs8jbbc16"; depends=[backports checkmate data_table R6]; }; + mlr3oml = derive2 { name="mlr3oml"; version="0.1.0"; sha256="1k694ilgp09cxcs69rc6lg9i5pss7vskb400fjyakbxl7isb8xy2"; depends=[backports checkmate curl data_table jsonlite lgr mlr3 mlr3misc R6 stringi]; }; + mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.2.1"; sha256="1dzq6yb6amk1xhg4345inkcl253pwdr5zs2l0kpycw3qv5kr00n7"; depends=[backports checkmate data_table digest lgr mlr3 mlr3misc paradox R6 withr]; }; + mlr3proba = derive2 { name="mlr3proba"; version="0.2.0"; sha256="1mync64qzqqndyvzfqz3llhp39dmphx5xa6j8zv2yzh4w5dmxwjw"; depends=[checkmate data_table distr6 mlr3 mlr3misc mlr3pipelines paradox R6 Rcpp survival]; }; mlr3shiny = derive2 { name="mlr3shiny"; version="0.1.1"; sha256="0jn5n6k1dq59g5m6pvpp964pcjv1mjbdbdz7dag7gs26g8c215jb"; depends=[data_table DT e1071 mlr3 mlr3learners mlr3measures plyr purrr ranger readxl shiny shinyalert shinydashboard shinyjs shinythemes shinyWidgets stringr]; }; - mlr3tuning = derive2 { name="mlr3tuning"; version="0.1.2"; sha256="0559jj4xbzg63df2rn0sw6r6fz5b463k2lcx83l4q3mki72pl9xx"; depends=[checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; - mlr3verse = derive2 { name="mlr3verse"; version="0.1.1"; sha256="1spwmylnsks479nkj688nd8h3slkh8cnmrxrvh7s2zyqla6arigx"; depends=[mlr3 mlr3db mlr3filters mlr3learners mlr3misc mlr3pipelines mlr3tuning mlr3viz paradox]; }; - mlr3viz = derive2 { name="mlr3viz"; version="0.1.1"; sha256="0k5a0h2jhk375hl4hwn1dxapjnm2hxhayw8rfh1i1p3qvswhgwla"; depends=[checkmate data_table ggplot2 mlr3misc]; }; + mlr3tuning = derive2 { name="mlr3tuning"; version="0.2.0"; sha256="1pm7glhc8a8syifa850hpac836ks3bi2kfcbw3d8zhmjk1g31l53"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; + mlr3verse = derive2 { name="mlr3verse"; version="0.1.3"; sha256="0hbzfcr1xwdyyf1jrxdrj4r1rzx15bj9s0pw5386zjwkvmdhp5c1"; depends=[mlr3 mlr3data mlr3filters mlr3learners mlr3misc mlr3pipelines mlr3tuning mlr3viz paradox]; }; + mlr3viz = derive2 { name="mlr3viz"; version="0.2.0"; sha256="168q8lrjgwk51bxcc5njcvca3nkcn7q1yhfjx99zcnlbsd1zi4rr"; depends=[checkmate data_table ggplot2 mlr3misc]; }; mlrCPO = derive2 { name="mlrCPO"; version="0.3.6"; sha256="1z9s52y318wp43q7n28h89m5s58bcfawzj9zx03ji1adf68sk9ah"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; mlrMBO = derive2 { name="mlrMBO"; version="1.1.4"; sha256="007944cb6hz7rah0bk66mpfa22jinz9i224wljgnj0w51lpipbjv"; depends=[backports BBmisc checkmate data_table lhs mlr parallelMap ParamHelpers smoof]; }; mlsjunkgen = derive2 { name="mlsjunkgen"; version="0.1.1"; sha256="109ag52x4y3rzx8yccilrnl24mz4ximzx6v4lrbak7dpiclqrw7a"; depends=[]; }; - mlt = derive2 { name="mlt"; version="1.1-2"; sha256="0dxfyq9wf49sy57gjvp2v6wp50wbiracvfsd4mbrgz4k36h3w5ra"; depends=[alabama basefun BB coneproj nloptr numDeriv sandwich survival variables]; }; + mlt = derive2 { name="mlt"; version="1.2-0"; sha256="0mjbnxkmv2pzwmwn249x21nfqb1v1ls3jah9a0vh6ndhz8c4gz7x"; depends=[alabama basefun BB coneproj nloptr numDeriv sandwich survival variables]; }; mlt_docreg = derive2 { name="mlt.docreg"; version="1.0-5"; sha256="1dp5h86bcga9lkc1hy5sbc3as0piyzxlz6z5iwli2a33ssyihxql"; depends=[mlt numDeriv]; }; mltest = derive2 { name="mltest"; version="1.0.1"; sha256="14gyssfph088v936mpywmd4y8z9vdv0zk8638vlg23j8cf5j4al2"; depends=[]; }; mltools = derive2 { name="mltools"; version="0.3.5"; sha256="045v28w7vz1zjxim8vfc6ncvg2mavr1q332x0hzlqpfzrk7gz4vh"; depends=[data_table Matrix]; }; - mlxR = derive2 { name="mlxR"; version="4.1.0"; sha256="1jb214isf0zbx1j7xkidmc4jrvlw3hfvs7q2if3489p0si1n2k23"; depends=[ggplot2]; }; - mma = derive2 { name="mma"; version="10.2-2"; sha256="021nc865rdis0m939y8qvk9nnhp9lmfn4rlqhvfxfc4774sphmll"; depends=[car gbm gplots lattice plotrix survival]; }; - mmabig = derive2 { name="mmabig"; version="2.0-0"; sha256="1kp7q2xvkbwa8syk82dsynzizjmhh9z3p7r5hnnvp169as0yvgwl"; depends=[car glmnet gplots mma survival]; }; + mlxR = derive2 { name="mlxR"; version="4.1.3"; sha256="1ma4kw4db9iyylly8y7kkz4bv2qfmqyy9ychv4yhra6123n4001x"; depends=[ggplot2]; }; + mma = derive2 { name="mma"; version="10.3-2"; sha256="1r04x1dykq305d83xvxx5lbgvqfkspx0r4krqsg78av0njf4knqk"; depends=[car gbm gplots lattice plotrix survival]; }; mmand = derive2 { name="mmand"; version="1.6.1"; sha256="19s6v083iry95akhc2ccj617sjcddalb6dp87j3lqjlgybxws62q"; depends=[Rcpp]; }; mmap = derive2 { name="mmap"; version="0.6-19"; sha256="0s3vlwdcwifl2a2byr0f2cc4vmbdparc55x889a3h115ga7k91w2"; depends=[]; }; mmapcharr = derive2 { name="mmapcharr"; version="0.3.0"; sha256="175qb6ay6zlcdcxzc86lmlddfzjc8j8i1b8cvi2q0j6nbl2kl50r"; depends=[Rcpp rmio]; }; + mmaqshiny = derive2 { name="mmaqshiny"; version="1.0.0"; sha256="0v44hd7h9d8hdd2avwwwwc0a8rzm5ij3yhryxkrw7bwvr12zsp17"; depends=[Cairo caTools data_table dplyr DT ggplot2 htmltools leaflet lubridate plotly shiny shinyjs stringr XML xts zoo]; }; mmc = derive2 { name="mmc"; version="0.0.3"; sha256="03nhfhiiadga8mcp33kj20g33v9n5i62fdqgi20h5p80g849k719"; depends=[MASS survival]; }; mmcm = derive2 { name="mmcm"; version="1.2-8"; sha256="09xcvgzgg5x890jibmmbcd3rr8q8vmwxwk6s8zgn9a8hfdwqny9a"; depends=[mvtnorm]; }; mme = derive2 { name="mme"; version="0.1-6"; sha256="1k60y1yrf7fv939v32kf3il7r3cws0kih4bpm0ap28fvbx3vr3yb"; depends=[MASS Matrix]; }; mmeln = derive2 { name="mmeln"; version="1.4"; sha256="0q5w3ajc1v798dyvryny2a0c52hzhxrjm4md08mqvww65pdzhqc4"; depends=[]; }; mmeta = derive2 { name="mmeta"; version="2.3"; sha256="0hyxpph2hfjwiy95r0n3h64aab5ziqp2a8gmmpp6nyc77h638czb"; depends=[aod]; }; - mmetrics = derive2 { name="mmetrics"; version="0.3.0"; sha256="0g2bpsywcly2nz59vjxb3v5jdxq76wvv8iwyv5fqs8n78r208kxd"; depends=[dplyr ggplot2 magrittr purrr rlang stringr]; }; mmm = derive2 { name="mmm"; version="1.4"; sha256="1nydian004nldqhyw3x15w6qfml2gkjc0x8ii54faz563byjv3d8"; depends=[gee]; }; mmm2 = derive2 { name="mmm2"; version="1.2"; sha256="1h9pn5s3jjs4bydrr1qysjb4hv7vs4h3m7mvi22ggs2dzyz3b298"; depends=[gee]; }; mmmgee = derive2 { name="mmmgee"; version="1.20"; sha256="0y3pwnc9h7y2l9cvgfl62nl1vnnkla2y8082jhdvxsb3mk88rgad"; depends=[Matrix mvtnorm]; }; @@ -10514,7 +10903,7 @@ in with self; { mmpca = derive2 { name="mmpca"; version="2.0.1"; sha256="05vir7hjv5dccfcizyn5n6qxx2p53111if16l44a7ifg5k599xj9"; depends=[digest gsl Rcpp RcppEigen]; }; mmpf = derive2 { name="mmpf"; version="0.0.5"; sha256="1w1ll1l7yzwb1wmlrcfpgqyzni7yb20kxy422y867hx2ndxlfwpz"; depends=[checkmate data_table]; }; mmpp = derive2 { name="mmpp"; version="0.6"; sha256="16aypjf4i0ya3qgxqrrg8y0xbnq1pnqky1dpkgln5q494hphyg91"; depends=[]; }; - mmppr = derive2 { name="mmppr"; version="0.1"; sha256="0fswkqcw0xkqd9gmqabb61i32zscp5jzfx0z43wq7mrlwynryylv"; depends=[expm reshape2]; }; + mmr = derive2 { name="mmr"; version="0.1.0"; sha256="0by2v47b4kpjhfxzzl6kc1shw7g46nwnww4rq333r2cywvrbkk4w"; depends=[]; }; mmsample = derive2 { name="mmsample"; version="0.1"; sha256="0mdd2zryadd31a5pls5fvlxx52mr54jsi1i6mwrs4y7rl3i9v95z"; depends=[MASS Rcpp RcppArmadillo]; }; mmtsne = derive2 { name="mmtsne"; version="0.1.0"; sha256="1by0hrggla6idc1isnq072i1wfpw4x7id3hkg8l65gy8iycccd12"; depends=[]; }; mnis = derive2 { name="mnis"; version="0.2.7"; sha256="1yhhgrhsk3ww93vd29ipw16bkn16w0b2i7d46cb5bb5xs4s7vivd"; depends=[dplyr httr jsonlite Rcpp stringi tibble]; }; @@ -10524,10 +10913,10 @@ in with self; { mnlogit = derive2 { name="mnlogit"; version="1.2.6"; sha256="0dfwpkl8g7ap5xr48smiv8vdbamd2r1liy9nwpsn0kcsr9cj65n9"; depends=[Formula lmtest mlogit]; }; mnonr = derive2 { name="mnonr"; version="1.0.0"; sha256="143qkn3bx37a6r7kgmspqh55l2r8k9f93jgxr6qpg51w411k5ilb"; depends=[]; }; mnormpow = derive2 { name="mnormpow"; version="0.1.1"; sha256="0z53vwhkhkkr6zrjhd3yr14mb02vh7lr63frf0ivajndxiap0s9v"; depends=[]; }; - mnormt = derive2 { name="mnormt"; version="1.5-6"; sha256="0k8y08gj6z525yvc7y3dl2kzgnafbj3i7lvpamypsmqxf74zql99"; depends=[]; }; + mnormt = derive2 { name="mnormt"; version="2.0.1"; sha256="00nn0b6nksn2jbpg0np5wphryp4f9v95vqxf5v628yysnawgkcwq"; depends=[tmvnsim]; }; mnreadR = derive2 { name="mnreadR"; version="2.1.4"; sha256="11mfpf12pjpgvcih6q8l9fwspj2gy78fcirimzv7gn061nr4v7sg"; depends=[dplyr ggplot2 nlme tibble tidyr]; }; - mnt = derive2 { name="mnt"; version="1.0"; sha256="1an80q0gv65fd9av9kd5lic6z0g3w3ai2v8asgcvfqrdd87f3piw"; depends=[MASS pracma]; }; - mob = derive2 { name="mob"; version="0.1.0"; sha256="0zxp02fl514wb3apcyg072wdydqbnbfqkjj9gq5ql1kkvgh9wqf8"; depends=[gbm Hmisc Rborist]; }; + mnt = derive2 { name="mnt"; version="1.3"; sha256="1wf2mq4zdhznv589j7snw0gpnfrlvq6lhfihi2n20qlwm3lb9naa"; depends=[MASS pracma]; }; + mob = derive2 { name="mob"; version="0.2.1"; sha256="12nzdp1d8qfisc5jqahb83jgif4zzbh9i0sblzs2knb87w886q95"; depends=[gbm Rborist]; }; mobForest = derive2 { name="mobForest"; version="1.3.1"; sha256="1g5yfs70abl7pacprijlwdq3l72aqkbqs09z1pmw64wv4wa1vm25"; depends=[modeltools party sandwich strucchange zoo]; }; mobsim = derive2 { name="mobsim"; version="0.1.0"; sha256="077hw1162giwc90y5dvj9052i5hxdf2ii29m9q8ky028375dsd0f"; depends=[Rcpp sads vegan]; }; moc = derive2 { name="moc"; version="2.0"; sha256="0fgp8dg9qf7aw1qawmszlxs4bcccqmd87y4kkzdqggm807c2k5gh"; depends=[]; }; @@ -10539,30 +10928,34 @@ in with self; { modEvA = derive2 { name="modEvA"; version="2.0"; sha256="1vkg7x48k0xl1ngqwk6waggidva924j8mv7wfbzfcyj36yv8ggdw"; depends=[]; }; modMax = derive2 { name="modMax"; version="1.1"; sha256="1mx4623az7vzaqf530pklx7j92qwwq93pa2416lnr24jjcxgva2h"; depends=[gtools igraph]; }; modQR = derive2 { name="modQR"; version="0.1.2"; sha256="0x4405gaxpmmy6a0r8s7sxdi2lnc76f2i174h7xqlrwqy13xyfvv"; depends=[geometry lpSolve]; }; - modTempEff = derive2 { name="modTempEff"; version="1.5.2"; sha256="00xdvc0i3p8wq913giy44w0xz07sa4bdgqpi7pmpbv2c5wj30pk1"; depends=[mgcv]; }; modTurPoint = derive2 { name="modTurPoint"; version="0.1.0"; sha256="1m24vsi80ln1r7sr40pipaaanyc60yfxmjzf8l7nfy3yvyr8zqpn"; depends=[]; }; + modchart = derive2 { name="modchart"; version="0.4"; sha256="035676v16nlzjky910w9x4dbad79dbmmyhr9rj58lbi27i9z4ll0"; depends=[collapsibleTree dplyr DT dygraphs highcharter jsonlite lazyeval leaflet lubridate networkD3 plotly RColorBrewer reshape2 rgdal rpivotTable shiny shinyBS shinydashboard shinydashboardPlus shinyWidgets sp sparkline sunburstR tidyr treemap xts]; }; modcmfitr = derive2 { name="modcmfitr"; version="0.1.0"; sha256="1d6fi7pc10w2a97h1prhkg5cvzmxjp11c5bwrz90zry0m8anwjyh"; depends=[gtools nloptr]; }; - modeLLtest = derive2 { name="modeLLtest"; version="1.0.0"; sha256="1f80bgw1l6zgwlhz1agdrl5d44jfrk50yi3jgwf14l4zjx8x8rp3"; depends=[coxrobust MASS quantreg Rcpp RcppArmadillo survival]; }; + modeLLtest = derive2 { name="modeLLtest"; version="1.0.3"; sha256="0hf7y78yp3jb0af9df3df6n1z66y2iyhhmgyfz12c4iadly0v6x1"; depends=[coxrobust MASS quantreg Rcpp RcppArmadillo survival]; }; modeest = derive2 { name="modeest"; version="2.4.0"; sha256="087dw0013y4m7fcl06mxylh9lnp6acysl80d80r9srv4pw4r950s"; depends=[fBasics stable stabledist statip]; }; modehunt = derive2 { name="modehunt"; version="1.0.7"; sha256="0qz9kmf1qfs2dr7kzm9l7ac0h5rvi3b9j9896p991sk4bcalsl0b"; depends=[]; }; model4you = derive2 { name="model4you"; version="0.9-5"; sha256="1l94196x594ff61f8iaywpmw9ra3g27bnlchjl14hb9h0l21vbgm"; depends=[Formula ggplot2 gridExtra partykit sandwich survival]; }; modelDown = derive2 { name="modelDown"; version="1.1"; sha256="1l0aggkh0ykpqrp59bdz1cyl1ai397cw4hya80b7fm7s49imwczg"; depends=[archivist auditor breakDown DALEX devtools drifter DT ggplot2 kableExtra psych svglite whisker]; }; modelObj = derive2 { name="modelObj"; version="4.0"; sha256="1py2y80x37mmnl2y0pxdbhqkjrln6x210hg0g224d34lxk71m172"; depends=[]; }; - modelStudio = derive2 { name="modelStudio"; version="1.0.2"; sha256="0n3hghhw255nfcfrngbbcldvfy96cc13qlim6palmaln4zqhxsi0"; depends=[digest iBreakDown ingredients jsonlite progress r2d3]; }; + modelStudio = derive2 { name="modelStudio"; version="1.2.0"; sha256="1r13c145g4jki1jspnab1jcaqxflkad376w5bd15q25r69n7svb2"; depends=[digest iBreakDown ingredients jsonlite progress r2d3]; }; modelbased = derive2 { name="modelbased"; version="0.1.2"; sha256="0440pckpw9vfbvvhxsikayb0b6k479icr2m9ps0yr0xph240x9hw"; depends=[bayestestR emmeans insight parameters]; }; - modeldata = derive2 { name="modeldata"; version="0.0.1"; sha256="0dzjgb5g60hgqppxvzin8m51clkw8d89if7dw5ha46j2paw1n5r9"; depends=[]; }; + modelc = derive2 { name="modelc"; version="1.0.0.0"; sha256="0xz1zgv5yyvq0yfnhm1kvb4wvlyn4ccd0lkwji55vq8hndvjvk98"; depends=[]; }; + modeldata = derive2 { name="modeldata"; version="0.0.2"; sha256="13q6hhbwqbwnjvg8bz6iwwfx96p1saqq3r34cjrbnpgzmr1nn11l"; depends=[]; }; modeldb = derive2 { name="modeldb"; version="0.2.2"; sha256="14s8xh05qxv414xcnww1b3s0jqwnjb3l1dqf7q1qbw33ilwcmsfb"; depends=[dplyr ggplot2 progress purrr rlang tibble tidypredict]; }; modelfree = derive2 { name="modelfree"; version="1.1-1"; sha256="0ammka2wxx90z31zfzypw9dk5n118l0vxhykxbx6srfig2vdyn82"; depends=[PolynomF SparseM]; }; modelgrid = derive2 { name="modelgrid"; version="1.1.1.0"; sha256="1z6g0akczry7vldkk6anfq572zbsfzbd6qnyllgjpbxhy3rrrq0r"; depends=[caret dplyr ggplot2 lattice magrittr purrr]; }; modelplotr = derive2 { name="modelplotr"; version="1.0.0"; sha256="1b1pcah28b2fsr5l7v3lwxgvl03jr2cyxk5x5plnc3vwy5g0bnpm"; depends=[dplyr ggfittext ggplot2 gridExtra magrittr RColorBrewer rlang scales]; }; - modelr = derive2 { name="modelr"; version="0.1.6"; sha256="1x2m34m4qirb401krmgc5wg3g7ndbcglfab2l0655rmky3fz7rfp"; depends=[broom dplyr magrittr purrr rlang tibble tidyr tidyselect]; }; - modelsummary = derive2 { name="modelsummary"; version="0.2.0"; sha256="16z9cdjdg8inp21sq54sc0s30w09draznq8x2zyg5cmsilrbn9p7"; depends=[broom checkmate dplyr generics gt magrittr purrr stringr tibble tidyr]; }; - modeltests = derive2 { name="modeltests"; version="0.1.1"; sha256="0s6bnc2q0qxa3v92bsz5xczi4f9nhqz78vzb5jldjwlm4lwwy0xf"; depends=[dplyr generics purrr testthat tibble]; }; + modelr = derive2 { name="modelr"; version="0.1.8"; sha256="1i31nff7bqibk6r4hhd4j1vzwbyaf8493v0bjaagn36njmysfnw2"; depends=[broom magrittr purrr rlang tibble tidyr tidyselect vctrs]; }; + modelsummary = derive2 { name="modelsummary"; version="0.5.1"; sha256="16d4626sr9xyhvs8pbls336drccy18sl8pa33f9gh0hqw9iwxcij"; depends=[broom checkmate dplyr generics ggplot2 gt Hmisc kableExtra knitr magrittr purrr rmarkdown stringr tables tibble tidyr]; }; + modeltests = derive2 { name="modeltests"; version="0.1.2"; sha256="0m56awji87v710gx0rwgd2cgmnq78slfxarr05qy0piq4q9h7pqr"; depends=[dplyr generics purrr testthat tibble]; }; + modeltime = derive2 { name="modeltime"; version="0.0.2"; sha256="0y52v5n0cv9x3ck25kgdf8sad02v2gida982ahrcm0vjxqxqm5ma"; depends=[dials dplyr forcats forecast ggplot2 glue gt hardhat janitor magrittr parsnip plotly progressr prophet purrr reactable rlang scales stringr tibble tidyr timetk workflows xgboost yardstick]; }; modeltools = derive2 { name="modeltools"; version="0.2-23"; sha256="1vqh69256h344sbj5affm0kmc77dakrxp6442xfdnfd0y5d8sgkb"; depends=[]; }; modelwordcloud = derive2 { name="modelwordcloud"; version="0.1"; sha256="0ardib0h923i7jk8bgcq6pn2zazx9acf9sdggifsk46hdz8hvqnm"; depends=[]; }; - moderndive = derive2 { name="moderndive"; version="0.4.0"; sha256="16fbr80v0f5v6is19d5zh9s2qgqw2cb5q71lna7lp0hi22xljl98"; depends=[broom dplyr formula_tools ggplot2 glue infer janitor knitr magrittr rlang stringr tibble]; }; + modernVA = derive2 { name="modernVA"; version="0.1.1"; sha256="1kjfgr7fcf0w27gx1wwapxcw5wisfv75mq9qc5hjnaivmsnkwsv3"; depends=[]; }; + moderndive = derive2 { name="moderndive"; version="0.5.0"; sha256="1dq2qqpa6k12s14nmgh6df6i9mkalw1515j7vxkgpbwdwd152ry4"; depends=[broom dplyr formula_tools ggplot2 glue infer janitor knitr magrittr rlang stringr tibble]; }; modest = derive2 { name="modest"; version="0.3-1"; sha256="07rs014hdcabp2n0gg14pz2gmqgbw38vjv7a80vkzzh3601hxqws"; depends=[knitr rhandsontable shiny shinyBS]; }; modesto = derive2 { name="modesto"; version="0.1.2"; sha256="0vmdj8wcy0vv9jaihxrj0m5sr7favz18ngfqc8pd8rd4ipcnxkjf"; depends=[markovchain]; }; + modgetxl = derive2 { name="modgetxl"; version="0.4"; sha256="0j9fmhy3wra9qr8753a495ligfz5fwgydv3ixlfzx3sgbq882hic"; depends=[DT readxl shiny shinydashboard]; }; modi = derive2 { name="modi"; version="0.1.0"; sha256="0v78vzb22v2h2qlfhsyi0d2j3c2gj3wgv67p6gv74269kiaglf92"; depends=[MASS norm]; }; modifiedmk = derive2 { name="modifiedmk"; version="1.5.0"; sha256="171l3ls7icaanqf6jb64jabwq0mis2g1fswr0jfkpkrw5iw1c66q"; depends=[boot]; }; modiscloud = derive2 { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date raster rgdal sfsmisc sp]; }; @@ -10572,11 +10965,13 @@ in with self; { modygliani = derive2 { name="modygliani"; version="1.0"; sha256="01g96cdm4hgbsh6xsdfjg7vp7zb138sxwgv0msrlm27a6p4fcnlx"; depends=[]; }; moezipfR = derive2 { name="moezipfR"; version="1.0.2"; sha256="0sfl1c7cvm1milcglcvz9lyvgricsdm7shx0jxyn50y7xz0padww"; depends=[tolerance VGAM]; }; mogavs = derive2 { name="mogavs"; version="1.1.0"; sha256="0lhmwdv991bv7j8k066jr7ii94w60ydjpf5pzmv8jlblf3w2pr02"; depends=[cvTools]; }; - moko = derive2 { name="moko"; version="1.0.2"; sha256="16hcr570h73ljgfb14pcli358m5vy022bqx1davn26z21n3ls44y"; depends=[DiceKriging DiceOptim emoa GenSA GPareto mco]; }; + mokken = derive2 { name="mokken"; version="3.0.2"; sha256="16rgjnwvq397zxypacllpyhwz76i4b0m3jg6kzhr3zgsag1g62z3"; depends=[poLCA Rcpp]; }; + moko = derive2 { name="moko"; version="1.0.3"; sha256="1igrz0k9gfs4lmwh20bvmx8176d22g8gha7iv36mrpqgcynfdzh0"; depends=[DiceKriging emoa GenSA GPareto mco]; }; molaR = derive2 { name="molaR"; version="4.5"; sha256="1mfb05cfg0jh60yxnmwhja6m38185r58kbz2ak0ikgaqd9lls07s"; depends=[alphahull rgl Rvcg]; }; + molic = derive2 { name="molic"; version="2.0.1"; sha256="0ling6rbccp0r3y3g8mlxd39hx8qgb3z1y82rjzsaamqwbzx7biz"; depends=[doParallel ess foreach ggplot2 ggridges Rcpp]; }; mombf = derive2 { name="mombf"; version="2.2.9"; sha256="0z7crgvl1c15s0pn6isa9i4phfsbhl6msc1jdbk88ckh09ilx0z7"; depends=[mclust mgcv mvtnorm ncvreg Rcpp RcppArmadillo survival]; }; momentchi2 = derive2 { name="momentchi2"; version="0.1.5"; sha256="1fv0jmwws4mkl9dsaybfpj29ncvqx2idsijgwz2qjblcg309a6k9"; depends=[]; }; - momentfit = derive2 { name="momentfit"; version="0.1-0"; sha256="0f9303plxg5f58s2ypyzly5sghk535cfm078sigj0c9izam3nhmc"; depends=[sandwich]; }; + momentfit = derive2 { name="momentfit"; version="0.1-1"; sha256="0nyfb8hg2akd0arla6qrz1f1lnlm0b30j945kfvbi8jjkbh2rpa2"; depends=[sandwich]; }; moments = derive2 { name="moments"; version="0.14"; sha256="0f9y58w1hxcz4bqivirx25ywlmc80gbi6dfx5cnhkpdg1pk82fra"; depends=[]; }; momentuHMM = derive2 { name="momentuHMM"; version="1.5.1"; sha256="01s0nv37w7nzg4jpm94sxi2m9kxlswcr00l1fm1y1c6x1asx4hpq"; depends=[argosfilter Brobdingnag car CircStats conicfit crawl data_tree doParallel doRNG dplyr extraDistr foreach geosphere ggmap ggplot2 lubridate magrittr MASS mitools moveHMM mvtnorm nleqslv numDeriv prodlim qdapRegex raster Rcpp RcppArmadillo rlang scatterplot3d sp survival]; }; momr = derive2 { name="momr"; version="1.1"; sha256="091vzaw8dm29q89lg2iys25rbg2aslgdn9sk06x038nngxdrn95r"; depends=[gplots Hmisc nortest]; }; @@ -10589,21 +10984,25 @@ in with self; { monomvn = derive2 { name="monomvn"; version="1.9-13"; sha256="1hm5qf28bh0q7f4zcjqx1qxw3l8hzkx349c1y3nwyfg7436vff6a"; depends=[lars MASS mvtnorm pls quadprog]; }; monoreg = derive2 { name="monoreg"; version="1.2"; sha256="16n622j1j998a5fhn1c1qbzk5bfa5h09d95ry89gsd00p40hqg0a"; depends=[]; }; monotonicity = derive2 { name="monotonicity"; version="1.3.1"; sha256="0bb6sl8yykry25a86qfggi36ggr1xrxcqsnzp6rb6na228hbwa2z"; depends=[lmtest MASS sandwich]; }; - monreg = derive2 { name="monreg"; version="0.1.3"; sha256="08rcg2xffa61cgqy8g98b0f7jqhd4yp8nx6g4bq3g722aqx4nfg3"; depends=[]; }; + monreg = derive2 { name="monreg"; version="0.1.4"; sha256="15qgfhbd8ny05rjd1nn33ynh4i7m7wcy8az53jraghlk760bymwg"; depends=[]; }; moonBook = derive2 { name="moonBook"; version="0.2.3"; sha256="0hys56mwbm776ff7dibi8wzyf69qiais9rs1jazv79lk6h56s9s6"; depends=[magrittr nortest purrr sjmisc stringr survival]; }; mopsocd = derive2 { name="mopsocd"; version="0.5.1"; sha256="10hssnm1afqmxa9kw6ifqnz3p3yyjrmxgi98zlj31a5g4nis8wb1"; depends=[]; }; + moreparty = derive2 { name="moreparty"; version="0.2.0"; sha256="0wds0223aqpflzmid9mdzszh1yrylqq68cqw5fj4yz0c1vwvfixh"; depends=[foreach ggplot2 iml MASS measures party partykit pdp plyr rlang varImp vip]; }; morgenstemning = derive2 { name="morgenstemning"; version="1.0"; sha256="17y90cf8ajmkfwla0hm4jgkbkd1mxnym63ph2468sfxkhn0r3v88"; depends=[]; }; morpheus = derive2 { name="morpheus"; version="1.0-1"; sha256="1zfx24ndlky0b6vg6an9vcjw955ms749dwb51x9gsj2m8vgrbpnn"; depends=[jointDiag MASS pracma]; }; - morphomap = derive2 { name="morphomap"; version="1.1"; sha256="1sl006lrp041vapv6bibl47hpd5qbihjigkk0f5gs3839g6c1pwd"; depends=[Arothron colorRamps DescTools geometry lattice mgcv Morpho oce raster rgdal rgl Rvcg sp]; }; + morphomap = derive2 { name="morphomap"; version="1.2"; sha256="1c01vs0jd171cbs0s6x67cjdla49bzhjbb704slbqili413wlxfm"; depends=[Arothron colorRamps DescTools geometry lattice mgcv Morpho oce raster rgdal rgl Rvcg sp]; }; morse = derive2 { name="morse"; version="3.2.5"; sha256="1y3daw8ccn0n61kj6lj6m3m4pfj936k786d385lyq05211rkdgqr"; depends=[coda deSolve dplyr epitools ggplot2 gridExtra magrittr reshape2 rjags tibble tidyr zoo]; }; mortAAR = derive2 { name="mortAAR"; version="1.0.2"; sha256="047xagjmqj6sla0zlz0ljdivggkv04i45yn7637a33ni1pmb83al"; depends=[magrittr Rdpack reshape2]; }; - mortyr = derive2 { name="mortyr"; version="0.0.1"; sha256="1mpgb9rcknghwm9xsn3d8s6fy4j319sinb6l76s8aq06n4f3hr7g"; depends=[httr jsonlite tibble]; }; - mosaic = derive2 { name="mosaic"; version="1.6.0"; sha256="07964r7mjq050ddm0n5j20zgx08qfhwxazkxlm63scwpkx3kskj9"; depends=[broom dplyr ggdendro ggformula ggplot2 ggrepel glue gridExtra lattice latticeExtra leaflet MASS Matrix mosaicCore mosaicData readr rlang tidyr]; }; + mosaic = derive2 { name="mosaic"; version="1.7.0"; sha256="19v5z0sd9zilzhzx6vqzfav3s743h93f13cz06qrafyvdgl2ic93"; depends=[broom dplyr ggdendro ggformula ggplot2 ggrepel glue gridExtra lattice latticeExtra leaflet MASS Matrix mosaicCore mosaicData readr rlang tidyr]; }; + mosaic_find = derive2 { name="mosaic.find"; version="0.1.1"; sha256="03ls5kd6f02rrj44kmdf4a70zflxz27m7hcxgh8lzhkp8dn0sgkn"; depends=[minpack_lm]; }; + mosaicCalc = derive2 { name="mosaicCalc"; version="0.5.1"; sha256="0w5j7q314hzfzaw24ych2dhn255lnn3w0x4xr47qc1zclbmbny91"; depends=[ggformula magrittr MASS mosaic mosaicCore rlang]; }; mosaicCore = derive2 { name="mosaicCore"; version="0.6.0"; sha256="1klw97h6lchw1cpcl8s637ikcl428cckmjq0czi7mibh9q9mw72z"; depends=[dplyr lazyeval MASS rlang tidyr]; }; - mosaicData = derive2 { name="mosaicData"; version="0.17.0"; sha256="04z0mdm52mykqsxsinhmsihn181zf6cw321gayk2rjp7lj7mwdq9"; depends=[]; }; + mosaicData = derive2 { name="mosaicData"; version="0.18.0"; sha256="0cx5dg26ha7nzkdyghkbbd6ikncj60qv1538az77lfgn2jylvkbz"; depends=[]; }; mosaicModel = derive2 { name="mosaicModel"; version="0.3.0"; sha256="1gx4rzh0h922gyb50vz6q5vqqp5ry5hf2mq95948q2gcady91k5w"; depends=[caret dplyr ggformula ggplot2 knitr lazyeval MASS mosaicCore testthat tibble tidyr tidyverse]; }; mosmafs = derive2 { name="mosmafs"; version="0.1.2"; sha256="04syr5qr91hyv1m5hfrjsriq0qgidaln06m7f3jgc1qyrni930rw"; depends=[BBmisc checkmate ecr MASS mlr mlrCPO parallelMap ParamHelpers smoof]; }; + mosqcontrol = derive2 { name="mosqcontrol"; version="0.1.0"; sha256="199rkfisagr4kfx358f8yrbls00fng0kq8siyrbfwwf8qrba9fla"; depends=[assertthat magrittr NlcOptim nloptr pracma sfsmisc]; }; mosum = derive2 { name="mosum"; version="1.2.3"; sha256="1xrrx0gaby5gbqssvhwracm8wny31lqzd64hkmr81s41z8srkxx9"; depends=[plot3D RColorBrewer Rcpp]; }; + motifcluster = derive2 { name="motifcluster"; version="0.1.1"; sha256="1a123djc476hf528h68f1l1sh47ljxh23hmp8j22fypiaci1a3av"; depends=[igraph LICORS Matrix RSpectra]; }; motmot = derive2 { name="motmot"; version="2.1.3"; sha256="09qsyc4ifdl316kjqqkarmflpjcd0ivkhx5fzi3502anj6dxpjnq"; depends=[ape caper coda ks mvtnorm Rcpp]; }; motoRneuron = derive2 { name="motoRneuron"; version="1.0.0"; sha256="1hdsf4c1v5hfaqpi5y1v60zqq5fdmlqdvzpsq77diclp9vzdshja"; depends=[dygraphs ggplot2]; }; moult = derive2 { name="moult"; version="2.1.0"; sha256="0k0969fwy648x25xw42w5ncimyw2cbq305rzf4m77p3pf0k50m9b"; depends=[Formula Matrix]; }; @@ -10611,16 +11010,16 @@ in with self; { mousetrack = derive2 { name="mousetrack"; version="1.0.0"; sha256="0lf0xh0c3xl27nh5w8wwyrm2jfzfajm2f73xjdgf746dp365qc8n"; depends=[pracma]; }; mousetrap = derive2 { name="mousetrap"; version="3.1.4"; sha256="1iizlcq6ak9hfqwaz8d0zmijfnw2v7fwgksxng9mxiqiva98is8a"; depends=[cstab diptest dplyr fastcluster fields ggplot2 magrittr pracma psych RColorBrewer Rcpp scales tidyr]; }; movMF = derive2 { name="movMF"; version="0.2-4"; sha256="0j5gp1l374479lsijw1hz00pxs09zzh7hapljv80lsvr24vfscpa"; depends=[clue skmeans slam]; }; - move = derive2 { name="move"; version="3.3.0"; sha256="03i3qin4yjg7dvk78r4hgb5v3pqs4mgq9i88q63ma1fd0qs2fx9r"; depends=[geosphere httr memoise raster Rcpp rgdal sp xml2]; }; + move = derive2 { name="move"; version="4.0.2"; sha256="131s66vmlpfkmcp0s68m8ckaagh157pnhz76q5n9b2asznmi5fd0"; depends=[geosphere httr memoise raster Rcpp rgdal sp xml2]; }; moveHMM = derive2 { name="moveHMM"; version="1.7"; sha256="031msh427hgjyr37imalr7smd79yqscw9xq5rjrixxc2w5qly9jj"; depends=[boot CircStats geosphere ggmap ggplot2 MASS numDeriv Rcpp RcppArmadillo sp]; }; moveVis = derive2 { name="moveVis"; version="0.10.5"; sha256="1lj22yr6v3vg795r72gkbhyabycppxbjsaldqiqgckhkdfh3lziw"; depends=[av cowplot curl ggplot2 gifski lubridate lwgeom magick magrittr move pbapply raster sf slippymath]; }; moveWindSpeed = derive2 { name="moveWindSpeed"; version="0.2.3"; sha256="14a2iymn4j831xlh42z5qxmhnh7xpp5bxasgpkhnb3v0b5ldyilh"; depends=[move Rcpp]; }; - movecost = derive2 { name="movecost"; version="0.3"; sha256="0lrnk09sdbamxc4xhrkgggjcim1xhbsnq13f3ysadn7d1rjazl9i"; depends=[gdistance raster rgdal rgeos sp]; }; + movecost = derive2 { name="movecost"; version="0.5"; sha256="1rhmm2xk4f9kjanyaxpn0h6p7ka5pn7z6wlax6d6yhi9w9km75sp"; depends=[gdistance raster rgdal rgeos sp]; }; mozzie = derive2 { name="mozzie"; version="0.1.0"; sha256="09dwrv4r0hi19gzi1vpif3q4wlbny9h22430g1hhv0wkqs86mhmw"; depends=[]; }; mp = derive2 { name="mp"; version="0.4.1"; sha256="0awvwqwb25q47j14b450k1k5mh2yzwhn7gizjv5j7lyiamk30iwq"; depends=[Rcpp RcppArmadillo]; }; mpMap2 = derive2 { name="mpMap2"; version="1.0.3"; sha256="0fa89sbqd22h4px9lizmsl7f5xmd1g56i6n1x0x418qvlmgrnn6j"; depends=[car fastcluster ggplot2 igraph jsonlite Matrix nnls progress pryr qtl RColorBrewer Rcpp sn]; }; mpa = derive2 { name="mpa"; version="0.7.3"; sha256="0mhnsbgr77fkn957zfiw8skyvgd084rja1y4wk5zf08q5xjs2zvn"; depends=[network]; }; - mpath = derive2 { name="mpath"; version="0.3-25"; sha256="1s1n0d681vlgdil9yqm7c5hh62k5mljgzga9475m40ajam1gfcik"; depends=[bst doParallel foreach MASS numDeriv pscl]; }; + mpath = derive2 { name="mpath"; version="0.3-26"; sha256="0yigcf9zdlr9nqdwb8bxcgfqs3l4xzzw65hj8ba3sybwzlwva7xw"; depends=[bst doParallel foreach MASS numDeriv pscl]; }; mpbart = derive2 { name="mpbart"; version="0.2"; sha256="1145n0lxmm0kjm2lc358d79hqws48crj17pjvmchl1pbfd7zi4r8"; depends=[bayesm cvTools mlbench mlogit]; }; mpcmp = derive2 { name="mpcmp"; version="0.1.3"; sha256="11j12ns04g2xdw5r34x86bacwacf3618rzpqz8wvfs1l192l001c"; depends=[]; }; mpcv = derive2 { name="mpcv"; version="1.1"; sha256="0vwycspiw9saj811f6alkbijivy7szpahf35bxn2rpn2bdhbn21i"; depends=[lpSolve]; }; @@ -10633,23 +11032,25 @@ in with self; { mppR = derive2 { name="mppR"; version="1.2.1"; sha256="0q4pyfwypicmx8lqkgjkmagh6kyr6iww8xa64fxv0ayf8pcbzrca"; depends=[ggplot2 igraph qtl]; }; mppa = derive2 { name="mppa"; version="1.0"; sha256="06v6vq2nfh4b407x2gyvcp5wbdrcnk3m8y58akapi66lj8xplcx4"; depends=[]; }; mpr = derive2 { name="mpr"; version="1.0.5"; sha256="132ahy05zrh2164bffiywgbarxvzkc30k79w7ph9ca8d9mpgj70b"; depends=[survival]; }; - mpt = derive2 { name="mpt"; version="0.6-1"; sha256="13f48nflz6b3dk1d22ndfn22sdkz1rzhbh8c85lxk23qhfyc6fv6"; depends=[]; }; + mpspline2 = derive2 { name="mpspline2"; version="0.1.3"; sha256="0yadvnfsj1c9mm28v6501510dhcg77nzcvky32zmhaa21gwszcij"; depends=[]; }; + mpt = derive2 { name="mpt"; version="0.6-2"; sha256="19nkkpxd250xzk0il60psvhcikxfn9yqvfv9d21wilc9n2h79ad2"; depends=[]; }; mptools = derive2 { name="mptools"; version="1.0.1"; sha256="1g4fbfwxv9hir0jn22nh9854blgkh0b5jan3lv0888izj4isa1hc"; depends=[animation lattice latticeExtra raster rasterVis sp viridis zoo]; }; mr_raps = derive2 { name="mr.raps"; version="0.2"; sha256="069vyvsdgc5m7n2fd0h7jrllz789zvsxka7h5wiy36dc7lagd6f8"; depends=[nortest]; }; mrMLM = derive2 { name="mrMLM"; version="4.0"; sha256="03y8gsnz1xwjb5imzgs0iv7hfyajfxag2fjyg1s8qwbvl1s6w04c"; depends=[coin data_table doParallel foreach ggplot2 lars ncvreg qqman sampling sbl]; }; mrMLM_GUI = derive2 { name="mrMLM.GUI"; version="4.0"; sha256="0jl61rc642mqg9gmil6vdfc9296srvs2vmfm43ds0f46ysbh8wpx"; depends=[bigmemory coin data_table doParallel foreach ggplot2 lars mrMLM ncvreg openxlsx qqman sampling sbl shiny shinyjs]; }; mra = derive2 { name="mra"; version="2.16.11"; sha256="0268msdy4cs2ifpagmwiabi6aav54ckn214ai18aqv2h97hmixw0"; depends=[]; }; - mratios = derive2 { name="mratios"; version="1.4.0"; sha256="0pjcwqx3zykpwyykwgqziwignd41sjm2s1blyjwc1lhymis4ldzq"; depends=[mvtnorm]; }; - mrbayes = derive2 { name="mrbayes"; version="0.1.0"; sha256="0p0a1g6xv7g3scmn290ja4bicbdz5c9y6c4hfn4c7advd6ha6ang"; depends=[]; }; - mrbin = derive2 { name="mrbin"; version="1.3.0"; sha256="1wn80icmg1fcjrv739l47wcbx9l1p4zl0l0vphw5pmj4kd03x7sh"; depends=[]; }; + mratios = derive2 { name="mratios"; version="1.4.2"; sha256="18pi0dks0qmw0gv76yqm4gvxdqrcvr25j1vb8k4mkp5p35kzkzff"; depends=[multcomp mvtnorm survival survPresmooth]; }; + mrbayes = derive2 { name="mrbayes"; version="0.2.0"; sha256="1g5p2w65kkvhcsxzx59zqlc1f26zajmcbprf2bznvcl200qbypg5"; depends=[BH Rcpp RcppEigen rstan rstantools StanHeaders]; }; + mrbin = derive2 { name="mrbin"; version="1.4.2"; sha256="05rfqpx26j7j2ncmskvk1q9950rf38gwkw7li4qjrilq13301mq7"; depends=[]; }; mrbsizeR = derive2 { name="mrbsizeR"; version="1.2.1.1"; sha256="0v06sd5sh7ghlr8lgrv6l4glmv7chj3951pw4ssxrly4hz2rh6i0"; depends=[fields maps Rcpp]; }; - mrds = derive2 { name="mrds"; version="2.2.1"; sha256="1prhzyps4sckl24d4fpmkafiawx8c0xdwiixn9fa3i2cxv9ia6hd"; depends=[mgcv numDeriv optimx Rsolnp]; }; + mrds = derive2 { name="mrds"; version="2.2.3"; sha256="0bfkxl3y61abqyzlsm32222kp4zld2h7nkhpvzlsriqwp0pff20c"; depends=[mgcv numDeriv optimx Rsolnp]; }; mreg = derive2 { name="mreg"; version="1.1"; sha256="06la0yy2yys161jhlzlcm5lcv0664wm6sa8gjdnpd1s1nx52jkqf"; depends=[]; }; mregions = derive2 { name="mregions"; version="0.1.6"; sha256="0ix77hqcllhcpldchlnvciiflm6ysylynnnqvczpf8vx7gwa3lrk"; depends=[data_table httr jsonlite rappdirs sp tibble wellknown xml2]; }; - mrf2d = derive2 { name="mrf2d"; version="0.2.0"; sha256="0h8v4iyz24pi2md6l5kcdnhksafjqr41xqrxxyly4nfx4fqz16s7"; depends=[dplyr ggplot2 Rcpp RcppArmadillo Rdpack reshape2]; }; + mrf2d = derive2 { name="mrf2d"; version="0.4.0"; sha256="19ldfcfw779ksi7byfz5dk0lyhkjg67zhxj3nhw9kim41wmkrk4h"; depends=[dplyr ggplot2 Rcpp RcppArmadillo Rdpack reshape2 tidyr]; }; mrfDepth = derive2 { name="mrfDepth"; version="1.0.12"; sha256="14kc0rjrdgh1zyiibiq79gd1npdxydml6lcxyf4pwdzipaa1yrg4"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; }; mrfse = derive2 { name="mrfse"; version="0.2"; sha256="1dx21m54jsprlngj20q1bgvbw1bbm0sm8i01xanj68bx796ng14j"; depends=[]; }; - mrgsolve = derive2 { name="mrgsolve"; version="0.10.1"; sha256="19l6xvqax8gk9gy6svdhap61hprd6h7gv046isqsy03cv65hbkhq"; depends=[BH dplyr glue lifecycle magrittr Rcpp RcppArmadillo rlang tibble tidyselect]; }; + mrgsim_parallel = derive2 { name="mrgsim.parallel"; version="0.1.1"; sha256="0xsq7538z8rw4b5q3bcrspgfjw965yr5v7f8k3za04ksx775nfy2"; depends=[dplyr future_apply mrgsolve]; }; + mrgsolve = derive2 { name="mrgsolve"; version="0.10.4"; sha256="1zz1nw87y1h9rp715zvlsd4phdnr4lp6mk4wd149cnvzc10wk6f8"; depends=[BH dplyr glue lifecycle magrittr Rcpp RcppArmadillo rlang tibble tidyselect]; }; mri = derive2 { name="mri"; version="1.0.1"; sha256="1dssq556kid6c3djp0s6v853cranv2wjs2c9521l5ykg5g33hfmv"; depends=[]; }; mritc = derive2 { name="mritc"; version="0.5-2"; sha256="07b1b2k1ka43ikj2mhwnazw3ig7w10bf759fimxpksvk5k6wanx2"; depends=[lattice misc3d oro_nifti]; }; mro = derive2 { name="mro"; version="0.1.1"; sha256="00gc2hd8q5hb2xrswclcqqw1gxl83zmpma6bhsggg3kppsw1dpjv"; depends=[MASS matrixcalc]; }; @@ -10658,21 +11059,21 @@ in with self; { msSurv = derive2 { name="msSurv"; version="1.2-2"; sha256="02qm3mq17d2yj5mbz6gapd3zfi1wmiad5hpyimcb39impk43n2hf"; depends=[class graph lattice]; }; msaFACE = derive2 { name="msaFACE"; version="0.1.0"; sha256="1lh8crz507nlddm946lmn73xbnsh4cs0kg238ysnsvxs726c83fs"; depends=[]; }; msaR = derive2 { name="msaR"; version="0.3.0"; sha256="0lj9yhsissr4rgavyhgdxi2nrkq2088darzraisx9jsirjr49jf8"; depends=[ape htmlwidgets]; }; - msae = derive2 { name="msae"; version="0.1.1"; sha256="00snnml0vg0zx8cngc9ghma4y6fm8a20lmlf7f7bb2cgffa7q0ip"; depends=[magic]; }; + msae = derive2 { name="msae"; version="0.1.2"; sha256="0xdyym4zmm9znr89qgy1sl7bw84nddn1jv3wh66igkxbczf542ih"; depends=[magic]; }; msaenet = derive2 { name="msaenet"; version="3.1"; sha256="067p97z54dwhxy0w4ihi8dddcbvglh8ssynbh29fl9jyxfwjr1ms"; depends=[foreach glmnet Matrix mvtnorm ncvreg survival]; }; msap = derive2 { name="msap"; version="1.1.8"; sha256="0z5lm782jjb9w1h5vgz8bmxjdcrq9zb3xp1w5cb479jjc7krlgg3"; depends=[ade4 ape]; }; mschart = derive2 { name="mschart"; version="0.2.5"; sha256="08j342slv4ca6qkd12hh7jmmv5wv6kfxamw34dr6sd89kzrfdj0p"; depends=[cellranger data_table htmltools officer R6 writexl xml2]; }; mscstexta4r = derive2 { name="mscstexta4r"; version="0.1.2"; sha256="1hjcasmn33xav2mw085lcndv0432l6sz327aikf63491wj1sj7mw"; depends=[dplyr httr jsonlite pander stringi]; }; - mscstts = derive2 { name="mscstts"; version="0.5.3"; sha256="0snrlab77gmnlppz3hjkdjaxlqv7v68ncxlvgmw9g33p87g7fnkf"; depends=[httr jsonlite tuneR]; }; + mscstts = derive2 { name="mscstts"; version="0.5.6"; sha256="1kqja12v00s9fwh9skx9p7pyk2nbyb76cvqp00g7qgi0w5d5gq8j"; depends=[httr jsonlite tuneR]; }; mscsweblm4r = derive2 { name="mscsweblm4r"; version="0.1.2"; sha256="031s00wpr9zfjpii56m67q1phn05vqlhb8cfzhyf6fbrxvpb8k7n"; depends=[httr jsonlite pander]; }; - msd = derive2 { name="msd"; version="0.1.0"; sha256="03j50vq8mypidxzplznsa874inh5zy2v9rbw9yd7wsxwi8jf0s2b"; depends=[]; }; + msd = derive2 { name="msd"; version="0.2.0"; sha256="13g4ykzn5ny05js0msmax12yx3lchs8qnfdw8bw76gd8hlvibhlq"; depends=[]; }; msda = derive2 { name="msda"; version="1.0.2"; sha256="05khpa5qasnngn6yvk87gv5262plqpw4knb6hzgy52w401k0y80r"; depends=[MASS Matrix]; }; msde = derive2 { name="msde"; version="1.0.4"; sha256="1jyvsadkha4976vdf8nn2dbrsymr4n932cqrkmhawmy6pxa2c45g"; depends=[Rcpp RcppArmadillo RcppProgress]; }; msgl = derive2 { name="msgl"; version="2.3.9"; sha256="0793d12cd1mcnr97byhfwpnvm329w78f56n7dcs4116hlizp8l9h"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; msgpackR = derive2 { name="msgpackR"; version="1.1"; sha256="0a6vm4q1zfy8wlvhl9wfy09ig1iag9fvjasz5w9bll7idky4ldx5"; depends=[]; }; msgps = derive2 { name="msgps"; version="1.3.1"; sha256="0r8i0sw412jr148bid8sfpjcfbkf5589dqcqyvf5cm84cj7axnpz"; depends=[]; }; msgr = derive2 { name="msgr"; version="1.1.2"; sha256="15s3d77xqczjydgcfx4jlsq408hgsm8yzqk5248v58vm6zy36mh0"; depends=[purrr rlang]; }; - msigdbr = derive2 { name="msigdbr"; version="7.0.1"; sha256="19p8z617m3my8la7n1qgb1s2msf940r372im3q30qkbcx3qxg3sd"; depends=[dplyr magrittr rlang tibble]; }; + msigdbr = derive2 { name="msigdbr"; version="7.1.1"; sha256="0jvi49qa7616s58p0rx66pcw7h12rc8kgcg9225jk7pc3934hnzh"; depends=[dplyr magrittr rlang tibble]; }; msir = derive2 { name="msir"; version="1.3.2"; sha256="0pvc3q162vqq3k39nni732x05zzfz4y9y2zf56d83185ypszv9kb"; depends=[mclust]; }; msltrend = derive2 { name="msltrend"; version="1.0"; sha256="1rwy77ijf3hzq2zp47cijwvqcq34rdlfxwhrd9l56bvmlmzr1dqx"; depends=[changepoint forecast plyr Rssa tseries zoo]; }; msm = derive2 { name="msm"; version="1.6.8"; sha256="1d32y8f0vb2dfv3999liigpns788j145nrvd1xpxb9i2lsg8mwgk"; depends=[expm mvtnorm survival]; }; @@ -10682,17 +11083,18 @@ in with self; { msos = derive2 { name="msos"; version="1.1.1"; sha256="0jp4xw03iwc6dkk93kkky9k6xd285ylzp1x7jxkl3h0884jvyjyf"; depends=[mclust tree]; }; mssm = derive2 { name="mssm"; version="0.1.3"; sha256="1d1iksvm97g42p4y3jfzrk0xf4bbw8n237dcmy9jjyaw9vlxw61h"; depends=[nloptr Rcpp RcppArmadillo testthat]; }; mssqlR = derive2 { name="mssqlR"; version="1.0.0"; sha256="0qdnm7cx9cg14vfcnkmcjqr1jpxsw8xlrbnxldvzz44mzv2n878l"; depends=[magrittr RODBC]; }; + mstDIF = derive2 { name="mstDIF"; version="0.1.6"; sha256="0zhslqzvvk8wbgqvcipmzhy94awwfmkv5yfl812m8wmwgpkcqzpb"; depends=[eRm expm Matrix mirt PP scDIFtest]; }; mstR = derive2 { name="mstR"; version="1.2"; sha256="0v8cv9pswkvw0lva6jx5vavsb20dawgq83gn4rgydyhvigcl5szd"; depends=[]; }; mstate = derive2 { name="mstate"; version="0.2.12"; sha256="0qnhivbibzss8yfsg44cvbf73n4jj4i28rbdysl88g14ig5sabgv"; depends=[RColorBrewer survival]; }; mstherm = derive2 { name="mstherm"; version="0.4.7"; sha256="04jrp0w17svwmrvx356jmh04npbwhk9nvfy3r39vqr82yrvn6jip"; depends=[doParallel foreach nls2 plotrix RColorBrewer]; }; - mstknnclust = derive2 { name="mstknnclust"; version="0.2.0"; sha256="10fwl90ykk4i839shy588gxag185x6c397brn57917yiiyqfamq2"; depends=[amap igraph]; }; - mstrio = derive2 { name="mstrio"; version="11.2.1"; sha256="1lkkl4qc6vjl3b5crpsf27d6fwbk2d96v3ybxq9ndc8ia2jc8fkf"; depends=[crul data_table httr jsonlite miniUI openssl R6 rstudioapi shiny shinyjs]; }; + mstknnclust = derive2 { name="mstknnclust"; version="0.3.0"; sha256="0ym5v36kjw7s6ff3yxlxbkd0764jgv5a1pabx6acwp7pv80l4vl1"; depends=[igraph]; }; + mstrio = derive2 { name="mstrio"; version="11.2.2.1"; sha256="02xcrpgywnhnx9bqpcxb5yc352765s26jnyrqfm5x269w8lalx6z"; depends=[crul data_table httr jsonlite openssl R6 rstudioapi shiny shinyjs]; }; msu = derive2 { name="msu"; version="0.0.1"; sha256="1vhh9725dbywmzihnmsq1jircpn91r8227j2f76fvma9rwss90p7"; depends=[entropy]; }; mtconnectR = derive2 { name="mtconnectR"; version="1.2.1"; sha256="0hl46h535mjqwgrhmxlixhfsych3blzcynffp55nr1ynrra4dn06"; depends=[data_table dplyr dtw ggplot2 lubridate magrittr plyr proxy stringr tidyr XML]; }; mthapower = derive2 { name="mthapower"; version="0.1.1"; sha256="0g6dn0qn7z6qc1gbzspy1n7b803427bc9fv5yqk7j8i1is1p8h94"; depends=[]; }; mtk = derive2 { name="mtk"; version="1.0"; sha256="0vq2xlxf86l92fl91qm8m4yfjyz1h8szmwxiics7sc9f0as0dkmy"; depends=[lhs rgl sensitivity stringr XML]; }; mtsdi = derive2 { name="mtsdi"; version="0.3.5"; sha256="0j4hl690n8x7zfpygw5qv0m0jyl8dnz1d3r4314w06h7c578n2kp"; depends=[gam]; }; - muHVT = derive2 { name="muHVT"; version="1.0.1"; sha256="0qxfnnz88h00a2zfx0kagv7g4w3ck74x1zqcmxgrvwpdy3z851zn"; depends=[conf_design deldir dplyr ggplot2 gtools Hmisc magrittr MASS plyr polyclip purrr rgeos sp splancs]; }; + muHVT = derive2 { name="muHVT"; version="1.0.2"; sha256="02cdxf5f12l94c99drpnk9098zswzpv3n7q2klzaq97j1farpsfk"; depends=[conf_design deldir dplyr ggplot2 gtools Hmisc magrittr MASS plyr polyclip purrr rgeos sp splancs]; }; muRL = derive2 { name="muRL"; version="0.1-12"; sha256="1nzi0nyspva5ach0q0rvlljlfgmac8vxxggkwdzz1pr1cxhkprwd"; depends=[maps stringr]; }; muRty = derive2 { name="muRty"; version="0.3.1"; sha256="0v7wfb6347h4inf9jcbp6n4xfsqjzgj0i5sdfgqmbw0d5pcpnvhz"; depends=[clue lpSolve]; }; muStat = derive2 { name="muStat"; version="1.7.0"; sha256="18727xj9i9hcnpdfnl1b9wd6cp7wl1g74byqpda2gsrcardl57wz"; depends=[]; }; @@ -10704,7 +11106,7 @@ in with self; { muhaz = derive2 { name="muhaz"; version="1.2.6.1"; sha256="08qh43zx6h3yby44q2vxphfvmfdmqxpgyp0734yn341sy9n8pkkk"; depends=[survival]; }; muir = derive2 { name="muir"; version="0.1.0"; sha256="0h3qaqf549v40ms7c851sspaxzidmdpcj89ycdmfp94b2q3bmz98"; depends=[DiagrammeR dplyr stringr]; }; mulset = derive2 { name="mulset"; version="1.0.0"; sha256="0pigiy6hfiqh6x4zx6zqn3ykk36s3abzzyb67jdlf4jzc5zhrl9g"; depends=[digest gtools]; }; - multDM = derive2 { name="multDM"; version="1.1.1"; sha256="06r9dxp1ww5prp1gq67ch1n173dqa93islbjhqnsdaqrhaa7wav2"; depends=[MTS]; }; + multDM = derive2 { name="multDM"; version="1.1.3"; sha256="16bvr62lxmrq79z856iigwz5cjhk327x4hhd0cg3adgabqcz04yp"; depends=[MTS]; }; multbxxc = derive2 { name="multbxxc"; version="1.0.1"; sha256="1ip5awjc2ljpy6nsr4y42x0yg4n7lyaxp9kzfjvwp41k9lriz4gm"; depends=[Rcpp RcppArmadillo rmumps]; }; multcomp = derive2 { name="multcomp"; version="1.4-13"; sha256="1nszi22rcc551yc75h9cdfkdqsxw1rz30vadazmpyzihp1bh63yk"; depends=[codetools mvtnorm sandwich survival TH_data]; }; multcompView = derive2 { name="multcompView"; version="0.1-8"; sha256="1rfq9wvvrghq0542ff40wy8vdmsyd8spzz6ihcywcvxdfa8m6g8j"; depends=[]; }; @@ -10716,6 +11118,7 @@ in with self; { multiCA = derive2 { name="multiCA"; version="1.1"; sha256="1vgb13cfq10g8hxykgi3is3mrlbm76vh40cznapl7xxmw226ccrl"; depends=[bitops multcomp]; }; multiColl = derive2 { name="multiColl"; version="1.0"; sha256="01csf5gjk2wrv6d0m1j23gk6dcixck318ywfq1a1a0j1dl9wmvx4"; depends=[]; }; multiDimBio = derive2 { name="multiDimBio"; version="1.2.2"; sha256="0xadpvnyghpqh2q1gp1fqwv591sm3icmx60x4g8gn1vybi51k5rx"; depends=[ggplot2 gridGraphics lme4 MASS misc3d pcaMethods RColorBrewer]; }; + multiMarker = derive2 { name="multiMarker"; version="1.0"; sha256="1qay05mqacdy0psqrmd2a0sgy6az1a27k8204yh51b69p8zckym4"; depends=[ordinalNet truncnorm]; }; multiPIM = derive2 { name="multiPIM"; version="1.4-3"; sha256="0j7d0cgs8zcyiyibzmfhcandad76sf4gm57wkcv98bf96wkls58l"; depends=[lars penalized polspline rpart]; }; multiRDPG = derive2 { name="multiRDPG"; version="1.0.1"; sha256="0r6n148pakixw4caj0zwib8zirgl98lm0mxqmhvmqjh389icskxc"; depends=[]; }; multiROC = derive2 { name="multiROC"; version="1.1.1"; sha256="15ydbxpkdyvsc55di13jvwh9p6dzxc1yj93w1cwsd8jp2y10wsd3"; depends=[boot magrittr zoo]; }; @@ -10727,7 +11130,7 @@ in with self; { multicolor = derive2 { name="multicolor"; version="0.1.4"; sha256="1yswpqm62cvpfj6zxrprbvamjah3zxhsvn19qgpqmha0098lx5g2"; depends=[cowsay crayon dplyr glue magrittr purrr stringi stringr tibble tidyr]; }; multicon = derive2 { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[abind foreach mvtnorm psych sciplot]; }; multicool = derive2 { name="multicool"; version="0.1-11"; sha256="0xk408qbz9cxwf51j3pmy55gcjcnws8mc6j3vyn9zhramxj7x40w"; depends=[Rcpp]; }; - multicross = derive2 { name="multicross"; version="2.0.0"; sha256="1ic632ig0mzvq00hrkjs8vfa5mzp8vwrqflfqfdr5wkdvcqqnhbb"; depends=[AnnotationDbi crossmatch MASS Matrix nbpMatching org_Ce_eg_db org_Hs_eg_db org_Mm_eg_db Seurat]; }; + multicross = derive2 { name="multicross"; version="2.1.0"; sha256="17hk03wsms9ij6hp6dw77cvvngdb5i66is6pcl1q21pyp327zqi6"; depends=[crossmatch MASS Matrix nbpMatching]; }; multifluo = derive2 { name="multifluo"; version="1.1"; sha256="1hnh1gj6lfnh2fn0v064bszydgsr6p9f7p8yxyw5rdxfrxymiw09"; depends=[agricolae ellipse imager]; }; multifwf = derive2 { name="multifwf"; version="0.2.2"; sha256="1l6z3pzz6g6w1spp1f918jh6w0jm93qyc882rj8jhn1198d2s8nd"; depends=[]; }; multigraph = derive2 { name="multigraph"; version="0.93"; sha256="1966c38y7a7ik1a0sn3vcprckjphz7xvd6hkq3nhf4xdarbnwrxv"; depends=[multiplex]; }; @@ -10740,8 +11143,9 @@ in with self; { multimark = derive2 { name="multimark"; version="2.1.2"; sha256="15qdj3h5j30i56yx089pq8iii5kkk3ay6xr6z2msk22zj1rv7ahh"; depends=[Brobdingnag coda Matrix mvtnorm prodlim raster RMark sp statmod]; }; multimode = derive2 { name="multimode"; version="1.4"; sha256="142k2jbi6y9aaqz9cwl4wk2m1y1n1fgvk873nk3psdv2h6r77slx"; depends=[diptest ks rootSolve]; }; multinbmod = derive2 { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; }; - multinet = derive2 { name="multinet"; version="3.2"; sha256="00v0ac3pizdf8r6sm45hdrpj487pgcw9snf26zqcyhhlx5b8wicz"; depends=[igraph RColorBrewer Rcpp]; }; + multinet = derive2 { name="multinet"; version="3.3.1"; sha256="0sbzaadcln3ml4lsdd2ry0il6cppaxz48q5vj8g41rns2ifjspna"; depends=[igraph RColorBrewer Rcpp]; }; multinets = derive2 { name="multinets"; version="0.2.2"; sha256="1i5jsq1xy0g0l5d1z3hz4gj6inj4rhd6lf2s5xzd5k8ccp5aba8c"; depends=[igraph Rcpp]; }; + multinma = derive2 { name="multinma"; version="0.1.3"; sha256="1pg49gz7cq8cjhqg8pvs17lv0z46bgrn897xpdc6cjlp9qdgmzg5"; depends=[bayesplot BH copula dplyr forcats ggdist ggplot2 ggraph glue igraph Matrix purrr randtoolbox Rcpp RcppEigen Rdpack rlang rstan rstantools StanHeaders stringr tibble tidyr truncdist]; }; multinomRob = derive2 { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[MASS mvtnorm rgenoud]; }; multinomineq = derive2 { name="multinomineq"; version="0.2.1"; sha256="09h5nccfcrnl78rdxwsw5cqirfq40a6x4dmpkibc475z3xndk2rm"; depends=[coda quadprog Rcpp RcppArmadillo RcppProgress RcppXPtrUtils Rglpk]; }; multipanelfigure = derive2 { name="multipanelfigure"; version="2.1.2"; sha256="0cm5bd7k0fx6d3gybcll6vvh14byanyk6dj4civqij7psa48iagc"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types ggplot2 gridGraphics gtable magick magrittr stringi]; }; @@ -10753,8 +11157,8 @@ in with self; { multisensi = derive2 { name="multisensi"; version="2.1-1"; sha256="0f8i1jvrnmdsws5w7fz9k5pb5yfl5b9hnfd8aq4zj1r6m90kb6sz"; depends=[knitr sensitivity]; }; multisom = derive2 { name="multisom"; version="1.3"; sha256="0msxmrj4iawxg4vf4r7kj26zalxz4di2w4nxgxiakiig4g4ggy9z"; depends=[class kohonen]; }; multispatialCCM = derive2 { name="multispatialCCM"; version="1.0"; sha256="1fzd91w10iln8qb81z240lq3fi4gq22l4rh9npkav6fiq6g6rlp8"; depends=[]; }; - multistateutils = derive2 { name="multistateutils"; version="1.2.4"; sha256="1h1hi9pv28dbznjnafybjlbk196rj2f8lwrzwq2a5cpj0q7s582f"; depends=[data_table dplyr magrittr networkD3 Rcpp tidyr]; }; multitaper = derive2 { name="multitaper"; version="1.0-14"; sha256="04wd9bbhyx7697pfy0fpj02v1csr48hkpqj62h9p8a6w84ji4k68"; depends=[]; }; + multivar = derive2 { name="multivar"; version="0.0.2"; sha256="0ijv7zsznqsf8g6lgnaccfi76j04ycxd0zgjw5wbf03in5vxzlpc"; depends=[MASS Rcpp RcppArmadillo]; }; multivariance = derive2 { name="multivariance"; version="2.3.0"; sha256="00hvsia4xcs2r2lj9qqnlj4klivvpx58fmhr4dgy3waq8pp5a0dv"; depends=[igraph microbenchmark Rcpp]; }; multivator = derive2 { name="multivator"; version="1.1-9"; sha256="0vbqvhmym46zjr1h4s53sjrddfjpv8wi0sq4lrh2rmqarq068416"; depends=[emulator mvtnorm]; }; multiviewtest = derive2 { name="multiviewtest"; version="2.0.0"; sha256="09svd9jbvn92vkaifr33vg5scyh6311kpkr0lgsdj6lycz9cb4q7"; depends=[doParallel foreach irlba Matrix matrixStats mclust randnet]; }; @@ -10773,16 +11177,16 @@ in with self; { musica = derive2 { name="musica"; version="0.1.3"; sha256="0cfzfar706l0xdb0n11m18mayj5rrplvf4qry36vgxsiaxcba90r"; depends=[data_table lubridate magrittr qmap]; }; mustashe = derive2 { name="mustashe"; version="0.1.2"; sha256="0ihngnjay9zg8570za2rja0m2hxjy1ygc4zaif862sqflza68kdp"; depends=[digest formatR qs tibble]; }; mut = derive2 { name="mut"; version="1.1"; sha256="0v0vviarsmaiap3fa82ia01cblana65fd3cbj7jkd3aral6pm6yz"; depends=[expm Familias IBDsim paramlink]; }; - mutSignatures = derive2 { name="mutSignatures"; version="1.2"; sha256="1kbp221lm43a5wiw754yjkd3qidmca20m0i8jlxsqk8ijbp40ky2"; depends=[cluster doParallel foreach ggplot2 pracma proxy]; }; + mutSignatures = derive2 { name="mutSignatures"; version="2.0.1"; sha256="1rpg1ms33kc5dvcrjldd6fbg4rlnyp0lb0g7c1yxr42zndc613yh"; depends=[cluster doParallel foreach ggplot2 pracma proxy]; }; mutoss = derive2 { name="mutoss"; version="0.1-12"; sha256="1yk7p7pb2xm38d3j19ysgwmix48lvimbhkhjjwk5jmr1a0ysx298"; depends=[multcomp multtest mvtnorm plotrix]; }; mutossGUI = derive2 { name="mutossGUI"; version="0.1-11"; sha256="08pcca9gzns83az6jbjzv4xhm1wgmchhzz4f54x1aq0nmvsz3qq1"; depends=[CommonJavaJars JavaGD JGR multcomp mutoss plotrix rJava]; }; mvLSW = derive2 { name="mvLSW"; version="1.2.3"; sha256="05g6v4jbg1km2215lxbwzx8frr4in7xal9pai3y6l23d66lvh1iz"; depends=[fields wavethresh xts zoo]; }; mvMISE = derive2 { name="mvMISE"; version="1.0"; sha256="0lnc5g3ksl5cvwylh8p8baxyvq3z32a2i337q7lhg00j031ccy5c"; depends=[lme4 MASS]; }; - mvMORPH = derive2 { name="mvMORPH"; version="1.1.2"; sha256="0hhnd9ki9zcgxxfxjb0q2pmpgyfv9r5993n4rw87dh3mjxb0xsxx"; depends=[ape corpcor glassoFast pbmcapply phytools spam subplex]; }; + mvMORPH = derive2 { name="mvMORPH"; version="1.1.3"; sha256="0ilfq67vl4kjn3qz2wmyqsiymb4x9bry56hii4whw3an23r25plc"; depends=[ape corpcor glassoFast pbmcapply phytools spam subplex]; }; mvMonitoring = derive2 { name="mvMonitoring"; version="0.1.0"; sha256="03nvq8nmrmrpzyxlsqzww5ghk640115l1jgmgwfahhjxkdpkzfxx"; depends=[BMS dplyr lazyeval plyr rlang robustbase xts zoo]; }; mvPot = derive2 { name="mvPot"; version="0.1.4"; sha256="04l9dn8amwp366b6lic5fkl4kck0x2m3xcsqz6as4c3h772nhq1w"; depends=[evd gmp MASS numbers]; }; mvQuad = derive2 { name="mvQuad"; version="1.0-6"; sha256="016477dhjdkqiadc631vzpbp967mn4yli6by3s1k348mlfirwsi3"; depends=[data_table statmod]; }; - mvSLOUCH = derive2 { name="mvSLOUCH"; version="2.4"; sha256="06bpg2pp3kq9bvr4ab3c0ma7bxb56k514dgqvc3n6pfvavcgxkvf"; depends=[abind ape Matrix matrixcalc mvtnorm ouch PCMBase TreeSim]; }; + mvSLOUCH = derive2 { name="mvSLOUCH"; version="2.5"; sha256="0ysmns0vcraak53a0lf8g4sl36g2nhvk8pp45nx8qbjbbj8w6ib6"; depends=[abind ape Matrix matrixcalc mvtnorm ouch PCMBase TreeSim]; }; mvShapiroTest = derive2 { name="mvShapiroTest"; version="1.0"; sha256="0zcv5l28gwipkmymk12l4wcj9v047pr8k8q5avljdrs2a37f74v1"; depends=[]; }; mvabund = derive2 { name="mvabund"; version="4.1.3"; sha256="1z58h4dk3mc2hfnfvc7pghk471cbp7ah2s1z2ria5igw4s80962b"; depends=[MASS Rcpp RcppGSL statmod tweedie]; }; mvbutils = derive2 { name="mvbutils"; version="2.8.232"; sha256="0awd0jy492ha321c20kmmgl20kqphdmrmswakc0rq6h8z9d55kdg"; depends=[]; }; @@ -10798,23 +11202,23 @@ in with self; { mvna = derive2 { name="mvna"; version="2.0.1"; sha256="10i42hjm5bk62c20pmxhya283yzw1902ivkflmyqy79jri266dxf"; depends=[lattice]; }; mvnfast = derive2 { name="mvnfast"; version="0.2.5"; sha256="122zjzr0v4943cax10lp6flwfv479mncvalaj09kb173s5rgmf91"; depends=[BH Rcpp RcppArmadillo]; }; mvngGrAd = derive2 { name="mvngGrAd"; version="0.1.5"; sha256="0ir4pakfb2jq84rbfqix6rph8q6cgadjdn49rrdl4439b8hlsg8k"; depends=[]; }; - mvnmle = derive2 { name="mvnmle"; version="0.1-11.1"; sha256="131k2bnn6194y3f35r9cgys8g1z2y52123ng8iijpkpbfd147y92"; depends=[]; }; + mvnormalTest = derive2 { name="mvnormalTest"; version="1.0.0"; sha256="1hbapcmj1rzrdzlbkay94f3r2388sk60zizh48vbbkc83qlm7xbr"; depends=[copula moments nortest]; }; mvnormtest = derive2 { name="mvnormtest"; version="0.1-9"; sha256="1iaxjwp7bgxhaa4xqvgqb61316mq2fb0452d0pabhmbxkvmvdnj6"; depends=[]; }; mvnpermute = derive2 { name="mvnpermute"; version="1.0.0"; sha256="0mbyj5i5vysrnl3pgypl0cjf3sylsvzfl1pcxkn0q16560vqh2ba"; depends=[]; }; - mvord = derive2 { name="mvord"; version="1.0.0"; sha256="1x5846sb31s45817j05nr5pp8zd1rgq22n8wncj2a61y01ll7qwy"; depends=[BB dfoptim MASS Matrix minqa mnormt numDeriv optimx pbivnorm ucminf]; }; + mvord = derive2 { name="mvord"; version="1.0.1"; sha256="0gca25zaxbkmqa444bh16p1qc1np80882b5w3jg0w0ss5p4zhxyc"; depends=[BB dfoptim MASS Matrix minqa mnormt numDeriv optimx pbivnorm ucminf]; }; mvoutlier = derive2 { name="mvoutlier"; version="2.0.9"; sha256="1d562h3xicq962h27fi95qhrz9vkwxk0p8axhps1cy4b49w4bygi"; depends=[robCompositions robustbase sgeostat]; }; mvp = derive2 { name="mvp"; version="1.0-8"; sha256="0i2fd9s0dlpaa4vwkiq5is2d4vxc90hkdl0yk57gl651i8nxwnha"; depends=[magic magrittr mpoly partitions Rcpp]; }; mvprpb = derive2 { name="mvprpb"; version="1.0.4"; sha256="1kcjynz9s7vrvcgjb9sbqv7g50yiymbpkpg6ci34wznd33f7nrxm"; depends=[]; }; - mvrsquared = derive2 { name="mvrsquared"; version="0.0.3"; sha256="1bnfw8524zwlcixr7dmhm0liijs7fjxv1a8jrnrd6hzih04a9h6j"; depends=[Matrix Rcpp RcppArmadillo]; }; + mvrsquared = derive2 { name="mvrsquared"; version="0.1.0"; sha256="0k0jrwqmlmy7sdxpaziri0vmy1mvxsx6mmvhy1gr86x5rp4r3nsl"; depends=[Matrix Rcpp RcppArmadillo RcppThread]; }; mvrtn = derive2 { name="mvrtn"; version="1.0"; sha256="0k0k76wk5zq0cjydncsrb60rdhmb58mlf7zhclhaqmli1cy697k8"; depends=[]; }; mvsf = derive2 { name="mvsf"; version="1.0"; sha256="1krvsxvj38c5ndvnsd1m18fkqld748kn5j2jbgdr3ca9m3i5nlwf"; depends=[mvnormtest nortest]; }; mvst = derive2 { name="mvst"; version="1.1.0"; sha256="03q0kdychsmn4wcn50b6dqhxn4f2mjvrr5rac942xdv75w8qklc9"; depends=[MCMCpack mnormt mvtnorm]; }; mvtmeta = derive2 { name="mvtmeta"; version="1.1"; sha256="0s0s5922c5rs8cqk100nci3akqnhbvibm2n2gn8049v3qcyfajyb"; depends=[gtools]; }; - mvtnorm = derive2 { name="mvtnorm"; version="1.1-0"; sha256="0pfb6qk4yb6xaya8i1wvx6dnc3jj4s2g94sq2kzv4p8zn4pf24l1"; depends=[]; }; + mvtnorm = derive2 { name="mvtnorm"; version="1.1-1"; sha256="1pj51mi0g6ip7a2nhzc93yv9289kaayvspjvsbgbgarvx7axlrg9"; depends=[]; }; mvtsplot = derive2 { name="mvtsplot"; version="1.0-1"; sha256="0g5grrha77rsnkfasw5pxnpmkl7vgb728ms8apyg8xnbmgilg9vv"; depends=[RColorBrewer]; }; mwa = derive2 { name="mwa"; version="0.4.2"; sha256="18qrj3v99y1rykz82xmkbhzfjrm54dr620p8hm1s1pxjmlysyyc8"; depends=[cem MASS rJava]; }; mwaved = derive2 { name="mwaved"; version="1.1.7"; sha256="0g0yddsgdfyvqaj59qi6k3sknpbppdmgvq0rgnil5q8ki5skvgis"; depends=[Rcpp shiny]; }; - mwshiny = derive2 { name="mwshiny"; version="2.0.0"; sha256="07x36dymd79aziz8k3sfx7l82xzmv43pkwndsfv9ii58q7nli1hz"; depends=[shiny]; }; + mwshiny = derive2 { name="mwshiny"; version="2.1.0"; sha256="0c1a0d9qnaszffhzanmk31mdxqi7j3rn6bk7a3dwg4bq1da3rlgl"; depends=[htmltools shiny]; }; mxkssd = derive2 { name="mxkssd"; version="1.1"; sha256="0m9763dqrk8qkrvp18bsv96jv0xhc2m8sbxdk6x3w6kdjcl663p2"; depends=[]; }; mxmmod = derive2 { name="mxmmod"; version="1.0.1"; sha256="0rb0dqd4dzf5agij4cikz9a8cf6saz2q7bybxjagb8y4yjyhy2xv"; depends=[OpenMx]; }; myTAI = derive2 { name="myTAI"; version="0.9.2"; sha256="1inf6625qxr57jkwx5h3f3rdmlxf74my8bvigl8hxivd9z5z3wbl"; depends=[doParallel dplyr edgeR fitdistrplus foreach ggplot2 gridExtra nortest RColorBrewer Rcpp RcppArmadillo readr reshape2 scales taxize tibble]; }; @@ -10822,31 +11226,33 @@ in with self; { mycor = derive2 { name="mycor"; version="0.1.1"; sha256="00hqmvga22bv43833s974s7ky7lbry3r2bb5kza7kvkn1p6773rg"; depends=[lattice]; }; myepisodes = derive2 { name="myepisodes"; version="1.1.1"; sha256="0xk9bwgpl630nhc8qa2pc0rwqbqk3haxnp78gfxq6sn6z7i44k1p"; depends=[XML]; }; mztwinreg = derive2 { name="mztwinreg"; version="1.0-1"; sha256="1rg6ikaqdrc7q44s3r3km8h45prnvcpzpxd7nxbmh209iz9j19ai"; depends=[mclogit rms]; }; - n1qn1 = derive2 { name="n1qn1"; version="6.0.1-7"; sha256="1mwcv8gp6c2vj8n9w8y17318a2qrl6rjq8qcfx611fqf6dfrfchq"; depends=[Rcpp RcppArmadillo]; }; + n1qn1 = derive2 { name="n1qn1"; version="6.0.1-9"; sha256="11kp80nlxcg6vl5afnm8c0fgr2pha25p65gh7cjwlkbxs58iqm50"; depends=[Rcpp RcppArmadillo]; }; nCDunnett = derive2 { name="nCDunnett"; version="1.1.0"; sha256="0q2db1pixqr0wbx4bd05c98i1p0vgaqsfa1iwjxr08c62a5xhkks"; depends=[]; }; - nCal = derive2 { name="nCal"; version="2018.8-20"; sha256="1idgpzivw5wa423z86rf60ri50cyh8p38p4r493i9b2m9qzzqf1x"; depends=[drc gdata gWidgets kyotil]; }; + nCal = derive2 { name="nCal"; version="2020.5-21"; sha256="1gg0dkpsqw1nwi27iccn8d0c768gjlj0p6fr4260pvg5l03sz80n"; depends=[drc gdata gWidgets2 kyotil]; }; nCopula = derive2 { name="nCopula"; version="0.1.1"; sha256="03qbfvx0lg9prg52fk1jxar2bng2x6scac4g2c64kvp6vmf6x4mv"; depends=[copula Deriv stringi stringr]; }; nFCA = derive2 { name="nFCA"; version="0.3"; sha256="1jyyzagmppm3i7vh3ia4ic0zql1w04f66z81v0zpdihd4cbl5ra7"; depends=[]; }; nFactors = derive2 { name="nFactors"; version="2.4.1"; sha256="1diybai7pwaj9adn60b7nhvvpjjkwg3jimwp2ahgca9askmv93h2"; depends=[lattice MASS psych]; }; nJira = derive2 { name="nJira"; version="0.1.1"; sha256="0vh167kxljp68f0dx307wl6fp8nlp34vgrkr815z30mhx03p8j9r"; depends=[httr plyr rjson]; }; nLTT = derive2 { name="nLTT"; version="1.4.3"; sha256="0gpmlvam7k4gsiidblfl4f57mgkbq2pakzqak4yx4pxa9f8gpilm"; depends=[ape coda deSolve testit]; }; - nVennR = derive2 { name="nVennR"; version="0.2.1"; sha256="11qkwd8laf67iqyzx3ia424vykvsvy0k9d7labdgqfx2ihd95hh2"; depends=[Rcpp]; }; + nVennR = derive2 { name="nVennR"; version="0.2.2"; sha256="1nhi2fb1r9gfymypr9r3141hpp3arknrifby5d5j12ajm6kdfva0"; depends=[Rcpp]; }; na_tools = derive2 { name="na.tools"; version="0.3.1"; sha256="1lbzsckfg297n85kzbin65x1l6qgg9l50hd3xi2gflxc7n2xb8bw"; depends=[]; }; naaccr = derive2 { name="naaccr"; version="1.0.0"; sha256="1hw74a2gjm3gxq0s0qlndhqw0vij6p31walz1ic741z7hqsffqq7"; depends=[data_table stringi]; }; nabor = derive2 { name="nabor"; version="0.5.0"; sha256="1nj39cdfwrmhgsi3cq8imxv3n6xzc1v6dzdb2cf2hybjk368v4s7"; depends=[BH Rcpp RcppEigen]; }; nadiv = derive2 { name="nadiv"; version="2.16.2.0"; sha256="0gvpl8jrczk9afc7qg6w8w0gn28nia5mh3vanlsp7j0kj3vzqqc5"; depends=[Matrix]; }; - naijR = derive2 { name="naijR"; version="0.0.7"; sha256="1q93y959b2r8gf5ccw897kk3ky7i7mc6wrcspnpaipznrc4pnidi"; depends=[mapdata maps]; }; + naijR = derive2 { name="naijR"; version="0.1.3"; sha256="1zdifi0wf5v7gjfg7vp64i34fmlh7mg6bw71sli38cz3p52pmksr"; depends=[lifecycle magrittr mapdata maps RColorBrewer rgdal rlang]; }; naivebayes = derive2 { name="naivebayes"; version="0.9.7"; sha256="070m78d8hsbqfbapb6g8vvh91gyznqfdpqsaq6z3raps8zlybsag"; depends=[]; }; naivereg = derive2 { name="naivereg"; version="1.0.5"; sha256="1cxfl419pp7xh1xrad29gvpn6hm0rhk40vylj97ypndh6gmnynzz"; depends=[glmnet gmm grpreg ncvreg]; }; nakagami = derive2 { name="nakagami"; version="1.0.0"; sha256="1i9m1nlqfdk9k3bzf8qlfc11spzfqly49n1pk7phvykzjgd1c1s4"; depends=[assertthat]; }; namedCapture = derive2 { name="namedCapture"; version="2020.4.1"; sha256="0zdw3h3n4qjv9cpidb3g523ld6rrh49l2c1yhfqhk5wb7vddrs46"; depends=[]; }; namer = derive2 { name="namer"; version="0.1.5"; sha256="1687x6rc46bp2bmqkixzry5cc7lxjqwjk8ngrbg2fk7mzb4pwvnq"; depends=[dplyr fs glue magrittr purrr rstudioapi tibble]; }; namespace = derive2 { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; }; - nandb = derive2 { name="nandb"; version="2.0.6"; sha256="0gxpm22lmjbh63cifii5hwrh4wgk3f58wvp0frj5ns9jyfl6k4ik"; depends=[assertthat autothresholdr BBmisc checkmate detrendr dplyr filesstrings ggplot2 glue ijtiff magrittr purrr Rcpp reshape2 rlang stringr viridis withr]; }; - naniar = derive2 { name="naniar"; version="0.5.0"; sha256="0n0x7s7rd7zwp0jrzwl6c246yha514nwn77avd5iiq53kwypnlg9"; depends=[dplyr forcats ggplot2 glue magrittr purrr rlang tibble tidyr UpSetR viridis visdat]; }; + nametagger = derive2 { name="nametagger"; version="0.1.0"; sha256="0n7nskl2nk3j9zh8l2xqq026rwnk278n6ldcij0vb1nxxzcgdzf7"; depends=[Rcpp udpipe]; }; + nandb = derive2 { name="nandb"; version="2.0.7"; sha256="0l71dj1v6skqq2ir2sgfrvrq2bijzgac9s220g2zacijsisn2j4v"; depends=[assertthat autothresholdr BBmisc checkmate detrendr dplyr filesstrings ggplot2 glue ijtiff magrittr purrr Rcpp reshape2 rlang stringr viridis withr]; }; + naniar = derive2 { name="naniar"; version="0.5.2"; sha256="02b4mmb69k2scbr7lq83ymv782x1kd5i1z3b2863c2c6zwgilngb"; depends=[dplyr forcats ggplot2 glue magrittr purrr rlang tibble tidyr UpSetR viridis visdat]; }; + nanny = derive2 { name="nanny"; version="0.1.8"; sha256="0pfh4vs81z1bcjgjnsdwz62qn66ag9fgqw87imsbs0naw7niyi67"; depends=[dplyr gtools knitr lifecycle lme4 magrittr purrr rlang Rtsne tibble tidyr tidyselect widyr]; }; nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; }; nanostringr = derive2 { name="nanostringr"; version="0.1.4"; sha256="1g1hm5kz2bl3qqs2cz4nhvmak7mbh5pry34lp6lwnbxrgi97i1iz"; depends=[assertthat ccaPP dplyr epiR magrittr purrr rlang]; }; - nanotime = derive2 { name="nanotime"; version="0.2.4"; sha256="115i9v3h2fakq14jfc0yf7i96xvy8qas4qvmp0s9digy6ms7xyrd"; depends=[bit64 RcppCCTZ zoo]; }; + nanotime = derive2 { name="nanotime"; version="0.3.1"; sha256="1spdvr0vg9af5i2qka6947iyby6rqkm75shylv0h4dx1wgv5g5bb"; depends=[bit64 Rcpp RcppCCTZ RcppDate zoo]; }; naptime = derive2 { name="naptime"; version="1.3.0"; sha256="1cadfv5sdsmz61kf96hf2gbnghf24q40g5c3h9b8prvkxslap691"; depends=[lubridate]; }; nardl = derive2 { name="nardl"; version="0.1.5"; sha256="1xi1fkwgkfc1b8qsgi4lrjx419778qk0vxzl23azcziwa6fha5p8"; depends=[Formula gtools strucchange tseries]; }; narray = derive2 { name="narray"; version="0.4.1"; sha256="09n50shk2gy1m85kmvq8g3zh2nrikpllv8gph9x2id1p62rbqf1y"; depends=[progress stringr]; }; @@ -10858,26 +11264,28 @@ in with self; { nat_templatebrains = derive2 { name="nat.templatebrains"; version="0.9"; sha256="0r0ydhxnax4x4gwp60bgarhgp59g4sis7msa3rq4kddv8qdi3gix"; depends=[digest igraph memoise nat rappdirs rgl]; }; nat_utils = derive2 { name="nat.utils"; version="0.5.1"; sha256="12g87ar795xfbz7wljksb24x9hqvcirjr50y4mbpx1427r0l7clv"; depends=[]; }; nationwider = derive2 { name="nationwider"; version="1.1.1"; sha256="1crflv2wvrsyrhl612f7awvm0yfhl381q7pq190n3ydg093y32r6"; depends=[dplyr httr lubridate magrittr readxl rvest stringr tidyr xml2 zoo]; }; - natmanager = derive2 { name="natmanager"; version="0.4.0"; sha256="03vqy6kwc749ccydmjwjl49sydg534ijn0kpm11s4jp6nmybgzsa"; depends=[curl gh remotes usethis withr]; }; - natserv = derive2 { name="natserv"; version="0.4.0"; sha256="11wws7ikvvlmg7b1g1v6qdnhh40783ap5j3w3533wwdlj1igjzms"; depends=[crul data_table tibble xml2]; }; + natmanager = derive2 { name="natmanager"; version="0.4.6"; sha256="0vd8aipjk0dd8924g4sm3b33pf4af71d0vkm7vnwasmcgb15ki0v"; depends=[curl gh remotes usethis withr]; }; + natserv = derive2 { name="natserv"; version="1.0.0"; sha256="1j6m0fddrhq36qfjmj99zs77vxk5waqkshxi37pr2ccnis9hzy9h"; depends=[crul jsonlite tibble]; }; natural = derive2 { name="natural"; version="0.9.0"; sha256="0zxwbf3gg2h0bhl2w0md3rd162vlsgg0dv3187hc0ax7333cc4cx"; depends=[glmnet Matrix]; }; naturalsort = derive2 { name="naturalsort"; version="0.1.3"; sha256="0mz801y9mzld9ypp3xmsjw2d8l9q97sdnv09wrci9xi3yg2sjf6d"; depends=[]; }; + nawtilus = derive2 { name="nawtilus"; version="0.1.4"; sha256="1agqx9wiiypkpjrwahwlw5qkvqgkh01swyzc75csf9698x0779pm"; depends=[MASS]; }; + nbTransmission = derive2 { name="nbTransmission"; version="1.1.1"; sha256="0rh16iwkqvv7na4pjhc61sgwnb3h89jnzzd60xcwn98kf6mlvidb"; depends=[caret dplyr lubridate poisbinom rlang tidyr]; }; nbconvertR = derive2 { name="nbconvertR"; version="1.3.2"; sha256="0yhmz177r1miain65vspclahhz8cg7638ldbpsw8ylgf7a60l0sg"; depends=[]; }; nbpMatching = derive2 { name="nbpMatching"; version="1.5.1"; sha256="0f90k9vq05gkc0sgywb98frig63df0ih4z41dq7m2inx1zk5rqns"; depends=[Hmisc MASS]; }; - nc = derive2 { name="nc"; version="2020.3.23"; sha256="18hjwa86y14sdwzz46k6w9hb8s8w58bxmnqy2spib8qy6dvvpfj4"; depends=[data_table]; }; + nc = derive2 { name="nc"; version="2020.8.6"; sha256="19qsa5k38ajsbigccpch05m156n5wnd7c54j09fanjrpzy2048w2"; depends=[data_table]; }; ncappc = derive2 { name="ncappc"; version="0.3.0"; sha256="0bf00iskrd3x43839bwn957mi3qvm2dhcmqa7hl1ib0gp2r1cnzx"; depends=[bookdown Cairo dplyr ggplot2 gridExtra gtable knitr lazyeval magrittr PopED purrr readr reshape2 rlang rmarkdown scales tibble tidyr xtable]; }; ncar = derive2 { name="ncar"; version="0.4.2"; sha256="12cz4mlcmg8vdcn6747q1vz20wyypf89jq3nzx17s3aki0vlnwmj"; depends=[NonCompart rtf]; }; ncbit = derive2 { name="ncbit"; version="2013.03.29"; sha256="0f07h8v68119rjvgm84b75j0j7dvcrl6dq62vp41adlm2hgjg024"; depends=[]; }; - ncdf_tools = derive2 { name="ncdf.tools"; version="0.7.1.295"; sha256="1jgxivmg2gzvkn09n13i5xr1v0xcyp5ckhwxz6g5kdh9z2dkjhc2"; depends=[abind chron JBTools plotrix raster RColorBrewer RNetCDF]; }; ncdf4 = derive2 { name="ncdf4"; version="1.17"; sha256="1xls44ln2zjrrlimxl8v4bk2ni3g45c9j0gxdnjx31rikmrc95fv"; depends=[]; }; + ncdf4_helpers = derive2 { name="ncdf4.helpers"; version="0.3-5"; sha256="0ybnnaqfd8mk9mk92q9gd4g1qr55vjxnpmgnwji6h52cdrqa5irx"; depends=[abind ncdf4 PCICt]; }; ncdfgeom = derive2 { name="ncdfgeom"; version="1.1.0"; sha256="19gbpf19vjzfigi9awhqjx6zsv92h4w1lg3dps3sgaibym9lq3zk"; depends=[dplyr ncmeta RNetCDF sf]; }; ncdump = derive2 { name="ncdump"; version="0.0.3"; sha256="09g98mzpky32z41jf23ahzhyv34l34y1gqq99j2hl4pqlvvhxs9i"; depends=[dplyr ncdf4]; }; ncf = derive2 { name="ncf"; version="1.2-9"; sha256="0wxn004jn4wba2zqnfrd513pw4mjxkmk4n1xj829nxadn1zbkcax"; depends=[]; }; ncg = derive2 { name="ncg"; version="0.1.1"; sha256="1jzkzp61cc5jxmdnl867lcrjjm7y2iw9imzprbd098p1j3w8fvj7"; depends=[]; }; - ncmeta = derive2 { name="ncmeta"; version="0.2.0"; sha256="1qrb2mnb4qjgx1ss1zwz7z034xrb9p0w0q9mqdh6rg4qgdsfhdxh"; depends=[dplyr rlang RNetCDF tibble tidyr]; }; + ncmeta = derive2 { name="ncmeta"; version="0.2.5"; sha256="09vw94q9lxwi4iq74xy3jll7h97rmr9ppf4dv1hwqc9w1ad6fk7d"; depends=[dplyr rlang RNetCDF tibble tidyr]; }; ncodeR = derive2 { name="ncodeR"; version="0.2.0.1"; sha256="1pxiqxhq2rxs8rxxhw1hbds7z2qkf7ws26a8wsbw815yn6jm10n8"; depends=[cli R6 rhoR]; }; ncpen = derive2 { name="ncpen"; version="1.0.0"; sha256="0vl4cbrsifr5s1691gacmp0lk3aqyq0yfafafzv6g3zygi4igrsa"; depends=[Rcpp RcppArmadillo]; }; - ncvreg = derive2 { name="ncvreg"; version="3.11.2"; sha256="047z848chp1c10ijhw50a9mkjhhi9pd8d21c7jc9h9r2q3zgkixq"; depends=[]; }; + ncvreg = derive2 { name="ncvreg"; version="3.12.0"; sha256="1xy2jbb4q9wdahwffjl6lmmlhg2x7s7d0vbv4d50ddq92gd528mv"; depends=[]; }; ndjson = derive2 { name="ndjson"; version="0.8.0"; sha256="0lvzbgfi1sg4kya1mvv67z14qk3vz9q57x22qh57xq8ampdkg812"; depends=[data_table Rcpp tibble]; }; ndl = derive2 { name="ndl"; version="0.2.18"; sha256="0b235v6jf98rrqp5aqw3jkk7mq8dbqmhb758zbzza1mavh4n2k7s"; depends=[Hmisc MASS Rcpp]; }; ndtv = derive2 { name="ndtv"; version="0.13.0"; sha256="1qfjvq5wch256gmg7pw9jwda33r4963a8p8jmp27cmpzdwycvnzy"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; @@ -10885,7 +11293,7 @@ in with self; { neariso = derive2 { name="neariso"; version="1.0.1"; sha256="1b2gnws75kkqsi8mg9n0zzdaawx57a6zz47cswabj5m6nb09ikh8"; depends=[]; }; neat = derive2 { name="neat"; version="1.2.1"; sha256="0ifx2qbr8g6myz380rwayas26vg13wkblssvma4kbgfksw7cccgj"; depends=[igraph]; }; neatRanges = derive2 { name="neatRanges"; version="0.1.3"; sha256="1zfp6f1q7m0bks0shvzr120nd5jxba28xhi7vrd55qfy7g72167g"; depends=[data_table Rcpp]; }; - neatStats = derive2 { name="neatStats"; version="1.0.4"; sha256="0fh06q7136azsl0ml0f67vgw90pqcpp0b57r1gmq9f5kwjbwg1yy"; depends=[BayesFactor bayestestR Exact ez ggplot2 MBESS pROC]; }; + neatStats = derive2 { name="neatStats"; version="1.4.2"; sha256="0x7013lfcxk1agxkxw8ap3wwk9ziwaick817q5460ig3j0pq4r3q"; depends=[BayesFactor bayestestR Exact ez ggplot2 logspline MBESS pROC]; }; neatmaps = derive2 { name="neatmaps"; version="2.1.0"; sha256="1kz1na3fzpd8vkxmpp5rz8ksyf8q2wk456csiii82winv9a2zxc9"; depends=[ConsensusClusterPlus dplyr ggplot2 heatmaply igraph]; }; needmining = derive2 { name="needmining"; version="0.1.1"; sha256="0qsj0ihjchrnl4s44rpsizbcz033z00dmzvic2y1msv0bnfawl6p"; depends=[randomForest rtweet SnowballC SparseM stringr tau tm]; }; needs = derive2 { name="needs"; version="0.0.3"; sha256="16dkjpijz3rz7kd5ggxsdg55iwd42nll1vk6g5ix4xdbqrx6cp9x"; depends=[]; }; @@ -10894,19 +11302,24 @@ in with self; { neighbr = derive2 { name="neighbr"; version="1.0.3"; sha256="1rmglfjmx6bfd4w1cpx4rvp7hy2vqvcamy854h5dq0l3kwk4pjcm"; depends=[]; }; neldermead = derive2 { name="neldermead"; version="1.0-11"; sha256="0gf9rfwz48sadl6960mpfb6a3l9n5p28yq3n0a9vz8mr57vh1dzg"; depends=[optimbase optimsimplex]; }; neo2R = derive2 { name="neo2R"; version="2.1.0"; sha256="1fhi74d4730pxrmv1p2gz8ylvnilxn4l837nha6ndyhy00xfgkk6"; depends=[base64enc jsonlite RCurl]; }; + neo4jshell = derive2 { name="neo4jshell"; version="0.1.1"; sha256="03qnv5xf7dvlzq259brfwk7vfr05q7labakv9mj27x70yhxq1z7m"; depends=[fs magrittr R_utils ssh sys]; }; neo4r = derive2 { name="neo4r"; version="0.1.1"; sha256="0s4rjhn2mc8ca4p8p474a83dc277vrf7l968xwxkiac0d4fgbra7"; depends=[attempt data_table glue httr igraph jsonlite magrittr purrr R6 rlang rstudioapi shiny tibble tidyr tidyselect]; }; - neonUtilities = derive2 { name="neonUtilities"; version="1.3.3"; sha256="1lmk2h58ablfggyicyhndw3n74lrpb7zcp5y1nh24i0mkqrf6gfm"; depends=[data_table downloader dplyr gdata httr jsonlite lubridate pbapply plyr readr stringr tidyr]; }; + neonUtilities = derive2 { name="neonUtilities"; version="1.3.6"; sha256="15vkgc1mr1qarcy0f11a962iz0v6bds497b0qdcyw2smzdm4i0in"; depends=[curl data_table downloader dplyr gdata httr jsonlite lubridate pbapply plyr readr stringr tidyr]; }; + neonstore = derive2 { name="neonstore"; version="0.2.0"; sha256="1ndf26f278li5gs7c7vk0020pfgffcnf9i00xhb4ic582kw666xx"; depends=[curl digest httr jsonlite openssl progress rappdirs tibble vroom zip]; }; neotoma = derive2 { name="neotoma"; version="1.7.4"; sha256="1fknzp7qg5l5lkfvqfld0x67zj3xmi8vivsg70m47mbpcs92hmcf"; depends=[analogue dplyr httr jsonlite leaflet plyr reshape2 xml2]; }; nephro = derive2 { name="nephro"; version="1.2"; sha256="1izmzx8lah322xzb42asfnrvr2c9yqd0zf7fmrhwd3p4rr1rqa7d"; depends=[]; }; neptune = derive2 { name="neptune"; version="0.1.0"; sha256="0nynxvkzcdsmznyviw18gqky1kw7dxgc13nrsbf6999lr3s3shkj"; depends=[reticulate]; }; + nesRdata = derive2 { name="nesRdata"; version="0.3.1"; sha256="1lxvg11g8nizfn8sghirq2749fs9i4w1wiaz3v1djqbkzqcqfrcj"; depends=[dataone dplyr purrr rappdirs readr]; }; nestfs = derive2 { name="nestfs"; version="1.0"; sha256="0lzbjj287s5kmw9635gfyl3jdgfh5mxbwxqxmnwynbwccixk0akc"; depends=[dgof pROC]; }; - netCoin = derive2 { name="netCoin"; version="1.1.24"; sha256="14g7b5z1l5hc30pchwlyrgh6ggzfiq7n07h4yznz64cb459ishrh"; depends=[haven igraph Matrix]; }; + netClust = derive2 { name="netClust"; version="1.0.1"; sha256="1h58ispdx8ddsnqrrmcxn2rbqb0hb89gpjg4p14mr7vhxw5c9zva"; depends=[Rcpp RcppArmadillo]; }; + netCoin = derive2 { name="netCoin"; version="1.1.25"; sha256="0l0sqzx369h3d7x4w4irl6zvmn0n1acayc4ih6vcpq6lyzvysyc7"; depends=[haven igraph Matrix]; }; netSEM = derive2 { name="netSEM"; version="0.5.1"; sha256="0k4ngl4p1v2rp1sf2x65m7p0cd6ha98fyx21b73ki0531q0d9fil"; depends=[DiagrammeR DiagrammeRsvg gtools htmlwidgets knitr magrittr MASS png rsvg segmented svglite]; }; netassoc = derive2 { name="netassoc"; version="0.6.3"; sha256="1hyshnbpq60a3y13b4sh1c2rk78x09q01b7q6xrgv10w7bn9r2sg"; depends=[corpcor huge igraph infotheo vegan]; }; netchain = derive2 { name="netchain"; version="0.2.0"; sha256="1skpf1n6a17mjkcxqpl6vrskk04yvqa0v4n2zw9x5r1h46q9m6qk"; depends=[gtools igraph Matrix Rcpp stringr]; }; netcom = derive2 { name="netcom"; version="1.0.4"; sha256="0fka14sffm0p1gldk27fd62ng05spfpbn665b4w5hdf1z4z0bs20"; depends=[clue expm igraph Matrix pdist pracma vegan]; }; netcontrol = derive2 { name="netcontrol"; version="0.1"; sha256="1gskb728ycnhz9a9g9ghm0dz3ajf3dzgyv23bsk9i01wj9hrxhc0"; depends=[expm MASS Matrix pracma Rcpp RcppArmadillo Rdpack]; }; netdep = derive2 { name="netdep"; version="0.1.0"; sha256="0mrbqn5d8iqvs98a0kski0vya135z7l902xafya96s2h288jchx7"; depends=[igraph igraphdata MASS mvrtn]; }; + netdiffuseR = derive2 { name="netdiffuseR"; version="1.22.0"; sha256="1cmnrqsgxh391pm2jz4yg20hpsbhjrfx8w1qnydk5lyj44kzf4fc"; depends=[boot igraph MASS MatchIt Matrix network networkDynamic Rcpp RcppArmadillo sna SparseM viridisLite]; }; netgen = derive2 { name="netgen"; version="1.3.2"; sha256="1yqi4rb6w9ipxgbl1j1s2s81cg7nzrn65irn5gs82hsq94d6vv2j"; depends=[BBmisc checkmate ggplot2 igraph lhs mvtnorm stringr]; }; netgsa = derive2 { name="netgsa"; version="3.1.0"; sha256="0mn4dnvckdskigdfbszjnfmb3m6yfbz4qc26qwh1wznwx5wmcbf0"; depends=[corpcor dplyr glassoFast glmnet graph graphite igraph magrittr Matrix msigdbr quadprog rlang]; }; netgwas = derive2 { name="netgwas"; version="1.11"; sha256="13d889ji6x0v5pmqlr1gs9yskm3262fzb5i2l9lw6y6bc72q3l06"; depends=[glasso huge igraph MASS Matrix qtl RBGL tmvtnorm]; }; @@ -10936,32 +11349,37 @@ in with self; { neurocInstall = derive2 { name="neurocInstall"; version="0.12.0"; sha256="1fkb6ji9gigqdjl50hbgdgfidqpjgqlh1aidf6vn4qnfr92bsvqf"; depends=[devtools]; }; neurohcp = derive2 { name="neurohcp"; version="0.8.1"; sha256="01q9dkrpmwfj4r7is97f3lsmn84vm5qpvf44zfm1a6hhpxa0n7z0"; depends=[base64enc digest httr xml2]; }; neuroim = derive2 { name="neuroim"; version="0.0.6"; sha256="00cjr6pkip6zi2d0q3qbn3lb3k0z82v6c19qslvgpa9n0g63dr5p"; depends=[abind assertthat hash iterators Matrix Rcpp readr rgl stringr yaImpute]; }; - neuropsychology = derive2 { name="neuropsychology"; version="0.5.0"; sha256="0hlbjf8hxz4cl7fvg9mbyfmcyyxncc2nh9h1mrd2yzgrpgn0d0b5"; depends=[BayesFactor caret dplyr ggcorrplot ggplot2 Hmisc htmlTable lme4 MuMIn png ppcor psych stringi tidyr tidyverse tm wordcloud2]; }; + neuromplex = derive2 { name="neuromplex"; version="0.0-8"; sha256="1bc1kasyibpbfjjy19pmvb9lj61yqx536rgaadkislsxrnisxggs"; depends=[BayesLogit dplyr ggplot2 gridExtra magrittr tidyr]; }; neutralitytestr = derive2 { name="neutralitytestr"; version="0.0.2"; sha256="1p1zjc3fiphkxflsyzrxx8af98aa0gp9pvby63mmrsjb0z7ps948"; depends=[cowplot dplyr ggplot2 ggpmisc pracma scales]; }; neverhpfilter = derive2 { name="neverhpfilter"; version="0.3-1"; sha256="1x2sc9v40hrlg60v3887a680359zdql9c7n8y97dh7v8w7mw547x"; depends=[xts zoo]; }; + newFocus = derive2 { name="newFocus"; version="1.0"; sha256="067g6b25wz1awp0fdqyh8s53q0vmypfax08s5pz5i59wb9k8pgzs"; depends=[ctgt]; }; newTestSurvRec = derive2 { name="newTestSurvRec"; version="1.0.2"; sha256="06p782md33wqh5wa1735yg5i01d42p74kl7h5qhqs9cd732ls6pz"; depends=[]; }; newsanchor = derive2 { name="newsanchor"; version="0.1.1"; sha256="1s8qhq9jk5gnsimnvy7kdayya0ks0ly309l7zxm5rafj5x7k5vwn"; depends=[askpass devtools httr jsonlite lubridate tidyr xml2]; }; - newsmap = derive2 { name="newsmap"; version="0.7.1"; sha256="0cm9xrpsvhxlqvnqp7r44gx2rzy50hsvmqdlriw0yqd3fp9357qd"; depends=[Matrix quanteda stringi]; }; + newscatcheR = derive2 { name="newscatcheR"; version="0.1.0"; sha256="0rm91dfzfjhi51gk65gvq2z7aywg6y8ay3hrjnp6frlmyvh661sp"; depends=[tidyRSS]; }; + newsmap = derive2 { name="newsmap"; version="0.7.2"; sha256="109zljiz69l4kjld9xlhs05bkbbpazx3a1whl6nmx75zaljhhbs0"; depends=[Matrix quanteda stringi]; }; ngram = derive2 { name="ngram"; version="3.0.4"; sha256="1q4y64dy7vcjikbfx20fpdiy1kwvxay4y90xr5j8d8zkqnva0way"; depends=[]; }; ngramrr = derive2 { name="ngramrr"; version="0.2.0"; sha256="1p8s4p3h27g647rxx9qjfad5dzbngjbmvhw4gz0jbsmfqrsf72by"; depends=[tau tm]; }; - ngspatial = derive2 { name="ngspatial"; version="1.2-1"; sha256="1c65ws9b9s2grr44lqg8026c4p2875d0426dfmrakpb44mw2zppp"; depends=[batchmeans Rcpp RcppArmadillo]; }; + ngspatial = derive2 { name="ngspatial"; version="1.2-2"; sha256="09hdvmbna4m62zv18k5kj9718wzw7p43wnal2j6aa0m5sd2rx9rz"; depends=[batchmeans Rcpp RcppArmadillo]; }; nhanesA = derive2 { name="nhanesA"; version="0.6.5"; sha256="0bb53s379qrm8xqp4bsi5vgk6v6hvwadzjv09pvdp1n45z7rqj86"; depends=[Hmisc magrittr plyr rvest stringr xml2]; }; nhdR = derive2 { name="nhdR"; version="0.5.3"; sha256="0zd10zy9kn97nm2i0y8h5wjdmzxblv5azybycwf08aqr0x6axh3n"; depends=[curl dplyr foreign gdalUtils ggplot2 httr maps memoise purrr rappdirs rgdal rlang rvest sf stringr units xml2]; }; - nhdplusTools = derive2 { name="nhdplusTools"; version="0.3.13"; sha256="1r2rcdlx1wsxrr931nwlprkbsmbj1bxgkjmafd1v8fxnl6cgdkk7"; depends=[dplyr httr igraph jsonlite magrittr prettymapr R_utils RANN rosm sf tidyr units xml2]; }; + nhdplusTools = derive2 { name="nhdplusTools"; version="0.3.14"; sha256="127bk97rlnh46gdns0s7rpk3s9nbqkb12znf8ddrfbrbbzz2cjb7"; depends=[dplyr httr igraph jsonlite magrittr prettymapr R_utils RANN rosm sf tidyr units xml2]; }; nhds = derive2 { name="nhds"; version="1.0.3"; sha256="1cgw3hmsik3vlnb1lgalhvhrqzwdv08dp80vwpw1nwbf8whcbxjn"; depends=[]; }; + nhlapi = derive2 { name="nhlapi"; version="0.1.2"; sha256="13zzy0z2vw8f3q2jy67690w9p71y3rf34xccy5ir49iaflmy4i89"; depends=[jsonlite]; }; nhlscrape = derive2 { name="nhlscrape"; version="0.1.3"; sha256="0x6y747j6lha3jw4v2wavgd12xw5nx4m8biv9rmq9z0qy53vncjc"; depends=[DBI httr jsonlite RSQLite rvest xml2]; }; nhm = derive2 { name="nhm"; version="0.1.0"; sha256="1yf9hnbmfb7xj8mbhnq40wvd0pd88x9qspy1jr3x0n8nb75i3jlp"; depends=[deSolve maxLik mvtnorm]; }; + nhs_predict = derive2 { name="nhs.predict"; version="1.2.0"; sha256="0p5ab9jkwpd6m28jmgx68lpny4mlid71kjxh2sasp2qghq6sxaj4"; depends=[]; }; nhstplot = derive2 { name="nhstplot"; version="1.1.0"; sha256="1yk7q731a4y9mhngdsb8xdw2id6m1q78329ja19hdpi6nnd7nhgn"; depends=[ggplot2]; }; nice = derive2 { name="nice"; version="0.4-1"; sha256="1p8vmimiq9sbjvbx6c2wqwwkpnzw4kkdvjry6qyadmm3frwhj5qb"; depends=[]; }; nicheROVER = derive2 { name="nicheROVER"; version="1.0"; sha256="0sa7wfpzkin78vz48vwa5iac82v5l1s3zczdxz8sc2kyg22fj0aw"; depends=[mvtnorm]; }; nichevol = derive2 { name="nichevol"; version="0.1.19"; sha256="0qj5cb0fyw0x1bczl6l0kl6jqir4yg8sb9fsfkd3h64d0ls2arl5"; depends=[ape castor concaveman geiger raster rgdal rgeos sf sp stringr]; }; nilde = derive2 { name="nilde"; version="1.1-3"; sha256="0h88if7dh16inyy5zh0yjqmc0c57k99la038p5vlwkj62vvjscmm"; depends=[]; }; nima = derive2 { name="nima"; version="0.6.2"; sha256="0n8r8h1m0v0ssbpv6p32jby49f45qbicwr0awm7x054p48qk49cy"; depends=[assertthat dplyr ggplot2 ggthemes gridExtra gtools scales]; }; - nimble = derive2 { name="nimble"; version="0.9.0"; sha256="04anz8xfkdv2c00hax305lycp0gzjspsq34hfgm3w51kz6nqzhpb"; depends=[coda igraph R6]; }; - nimbleEcology = derive2 { name="nimbleEcology"; version="0.2.1"; sha256="0bf0pqvsfvbhnpnk5hs3f90dqvw2n1j9y8ajaw9j7n4gld3wzxqb"; depends=[nimble]; }; + nimble = derive2 { name="nimble"; version="0.9.1"; sha256="0msp6f633iy5s4d10l51670lab23ji7irxlbwrr03jwk24bqlpmd"; depends=[coda igraph R6]; }; + nimbleEcology = derive2 { name="nimbleEcology"; version="0.3.0"; sha256="10jkvwbfqg605svfay7f3vcp0k3rp450kgsfggwd3j21y415g3rl"; depends=[nimble]; }; nipals = derive2 { name="nipals"; version="0.7"; sha256="14rq54qy4gc4l9f5h48vrsrh7sb0wzzxbvjn0zax82pz2fw6nybx"; depends=[]; }; nitrcbot = derive2 { name="nitrcbot"; version="1.2"; sha256="0lainbw9j5aj9s824afpxdjl3q2f728jfpdfji7kpi9hdg8jixhx"; depends=[dplyr httr jsonlite RCurl]; }; nivm = derive2 { name="nivm"; version="0.3"; sha256="111jkgirgsl1j36xgwi81wzwxial3vdw8mqzi1faldxxd9a2cixm"; depends=[bpcp ssanv]; }; + nixmass = derive2 { name="nixmass"; version="1.0-1"; sha256="0yiqmgps9zi46059l0vrqmxp27mv3nn5agand51v3b3x1xz2sq1p"; depends=[lubridate zoo]; }; nlMS = derive2 { name="nlMS"; version="1.1"; sha256="01ijg1bp3r0dg8ph7qpsx3hqzrrvfhbykml20hqchxk7c5n2w9wz"; depends=[nlme]; }; nlWaldTest = derive2 { name="nlWaldTest"; version="1.1.3"; sha256="1cppdz8qvigjdz4sgr1gm2j09zi407xxmryc28zc7ps7rvgy344h"; depends=[]; }; nlaR = derive2 { name="nlaR"; version="0.4.0"; sha256="05ipw2j4w5r3bpmhqh742yqz5qihx36jnsq08bli8jwsqha9vm8h"; depends=[rappdirs]; }; @@ -10969,20 +11387,20 @@ in with self; { nleqslv = derive2 { name="nleqslv"; version="3.3.2"; sha256="1v9znvncyigw9r25wx2ma0b7ib179b488dl0qsrhp5zrcz7mcjgm"; depends=[]; }; nlgeocoder = derive2 { name="nlgeocoder"; version="0.1.3"; sha256="13d30kfgfsny5gnn3yjfnclky6yixaa8sg0m689rszqxrvbrj79x"; depends=[jsonlite]; }; nlirms = derive2 { name="nlirms"; version="3.4.4"; sha256="1njyfip377a0f6hf9y32s077b4jv4h8ydbjgnl68yfypxbfn2xyx"; depends=[gridExtra gtable]; }; - nlist = derive2 { name="nlist"; version="0.1.0"; sha256="0i5appxx79fcv2g0frkzlv2yfym6kmmzbsk76rbh7ap8hram04jg"; depends=[abind chk coda purrr term]; }; - nlme = derive2 { name="nlme"; version="3.1-147"; sha256="1rqc3wy3lmy0wczsvsn8yszzsxhppfwg4iznb1j6ki2qawpdij7g"; depends=[lattice]; }; + nlist = derive2 { name="nlist"; version="0.2.0"; sha256="1ahs0gwxxg9lqxwhy19jmqmhsvpk116mp779sg4sqirsqkf0x1zl"; depends=[abind chk coda extras generics lifecycle purrr term tibble universals]; }; + nlme = derive2 { name="nlme"; version="3.1-148"; sha256="1cmf43r82kar1hpj9dhqfi3rbjka0z5s6cbdy7fklwh99xj3phkp"; depends=[lattice]; }; nlmeODE = derive2 { name="nlmeODE"; version="1.1"; sha256="1zp1p98mzbfxidl87yrj2i9m21zlfp622dfnmyg8f2pyijhhn0y2"; depends=[deSolve lattice nlme]; }; nlmeU = derive2 { name="nlmeU"; version="0.70-3"; sha256="05kxymgybziiijpb17bhcd9aq4awmp5km67l2py9ypakivi0hc6l"; depends=[nlme]; }; - nlmixr = derive2 { name="nlmixr"; version="1.1.1-7"; sha256="1dl3f0lns8cm32gx64i2jims4wknannl776mn2spzqh5z6g3nnzw"; depends=[BH brew cli dparser fastGHQuad flextable generics ggplot2 huxtable lbfgsb3c magrittr Matrix memoise n1qn1 nlme Rcpp RcppArmadillo RcppEigen RxODE StanHeaders stringr tidyr vpc yaml]; }; + nlmixr = derive2 { name="nlmixr"; version="1.1.1-9"; sha256="1ykhaww5fyx8vzbw2qpsfazanjw8icb2yf0259gx548lp71jqd7c"; depends=[BH brew cli dparser fastGHQuad flextable generics ggplot2 lbfgsb3c magrittr Matrix memoise n1qn1 nlme Rcpp RcppArmadillo RcppEigen RxODE StanHeaders stringr tidyr yaml]; }; nlmm = derive2 { name="nlmm"; version="1.0.1"; sha256="0q5vz4xqdb510i26zbcq4djcribn7h477akh8f56nzjgq231vhcq"; depends=[BH HI lqmm MASS Matrix mvtnorm nlme numDeriv Qtools Rcpp RcppArmadillo statmod]; }; nlmrt = derive2 { name="nlmrt"; version="2016.3.2"; sha256="1g0qq0a933ay65gkp04qgn2wqk6vw79pj2a228c2ski4rcmkjxyn"; depends=[]; }; - nloptr = derive2 { name="nloptr"; version="1.2.2.1"; sha256="1bhh2v14phzndjhiq7yw9vych6vzn5yy3vk9q35zcp3jhjjbwdyh"; depends=[]; }; + nloptr = derive2 { name="nloptr"; version="1.2.2.2"; sha256="0whkilb85k4wixvr3k7rygfw1rcs1fs9h8c18kz4p3y1k9hsj3p8"; depends=[]; }; nlpred = derive2 { name="nlpred"; version="1.0.1"; sha256="05jna8hzd5v36a0dwag6zr8ms1pkryas3qarwb946bkxlslffp27"; depends=[assertthat bde cvAUC data_table np Rdpack ROCR SuperLearner]; }; - nlraa = derive2 { name="nlraa"; version="0.53"; sha256="064mbajrpwm2pkiyb9lwmhhf3gxzkixay3vdz9lgfd3rr9gfrk06"; depends=[knitr nlme]; }; + nlraa = derive2 { name="nlraa"; version="0.73"; sha256="0dbjs0wd0rvnh8nzzy5b4kl83x5b0b1n5maxn0wx0i60xcykxhy0"; depends=[boot knitr MASS Matrix mgcv nlme]; }; nlreg = derive2 { name="nlreg"; version="1.2-2.2"; sha256="0gkcxg5m287axhvkl00xy26vidawhhb1ii1s13rh49v0yccwvvqh"; depends=[statmod survival]; }; nlrr = derive2 { name="nlrr"; version="0.1"; sha256="09wm8s5sadkhkq9pb3fjk66cb2xn8py46w1d7yp7fjhczh31bjsq"; depends=[Hmisc rms]; }; nlrx = derive2 { name="nlrx"; version="0.4.1"; sha256="1p29x6ayf3daahn8addh6xfrwl45rsllf4vx1k8l7hqwgxfa73rl"; depends=[crayon dplyr EasyABC furrr genalg GenSA igraph lhs magrittr purrr raster readr rstudioapi sensitivity sf stringr tibble tidyr XML]; }; - nls_multstart = derive2 { name="nls.multstart"; version="1.0.0"; sha256="08zdyx5hp1xbqjspk0f89fca5gc0b5j87hsccvn9dxn2lrnwk8nb"; depends=[dplyr minpack_lm purrr tibble tidyr]; }; + nls_multstart = derive2 { name="nls.multstart"; version="1.1.0"; sha256="1xm2jq1k1s3f403mddfrgx1h5120a49gwkqwfphbfa09qjwvlpjw"; depends=[dplyr minpack_lm purrr tibble tidyr]; }; nls2 = derive2 { name="nls2"; version="0.2"; sha256="0k46i865p6jk0jchy03jiq131pc20h9crn3hygzy305rdnqvaccq"; depends=[proto]; }; nlsMicrobio = derive2 { name="nlsMicrobio"; version="0.0-1"; sha256="0676n78265z00dacmq593c9l2239ii574djm9s7i7w8jk1kdhzx2"; depends=[nlstools]; }; nlsem = derive2 { name="nlsem"; version="0.8"; sha256="0q3wk7x67mh2447ah807djyklia2x2d45krsskffynazm83msnj9"; depends=[gaussquad lavaan mvtnorm nlme orthopolynom]; }; @@ -10991,53 +11409,55 @@ in with self; { nlsmsn = derive2 { name="nlsmsn"; version="0.0-5"; sha256="1awslzwvv4d3kqw01p7qcqkq5shby29gprzbzxfwnvb5v86dn6ka"; depends=[]; }; nlsr = derive2 { name="nlsr"; version="2019.9.7"; sha256="1zhfnv09khd2k236jzka9znc0nlps452gwl7db0grb0ylfyxbqg4"; depends=[digest]; }; nlsrk = derive2 { name="nlsrk"; version="1.1"; sha256="0yqcsz5pdhqsrd86g0yx8bdac13fbmvg89phj3v4qvla2jfznjba"; depends=[]; }; - nlstimedist = derive2 { name="nlstimedist"; version="1.1.4"; sha256="1c9yxpaxdx03yav4x0vk67f1j6w70jv212sfxrfxkz61ivyqcmlb"; depends=[broom dplyr ggplot2 lazyeval minpack_lm nlstools]; }; nlstools = derive2 { name="nlstools"; version="1.0-2"; sha256="0mjn1j9fqqgr3qgdr0ki4lfbd0yrkanvya4y2483q3wklqa6qvjc"; depends=[]; }; nlt = derive2 { name="nlt"; version="2.2-1"; sha256="10wf00qzf28dxjfvv12wsqxlfn6xz15wk8njrzgsgm9px1g6s21f"; depends=[adlift EbayesThresh]; }; nltm = derive2 { name="nltm"; version="1.4.2"; sha256="02f3rn5l1hfvjpymy7vljmh6iq9w1w96016kx75qw563zwhmp5kx"; depends=[survival]; }; nlts = derive2 { name="nlts"; version="1.0-2"; sha256="0s49qjwavl9ns2746nn4zy4h4dh0njfcvznm3qd61qhs7np9w1db"; depends=[acepack locfit]; }; nmaINLA = derive2 { name="nmaINLA"; version="0.2.0"; sha256="0z3iln81dj0sg64hi7dxypcslff5yl6nlx0hkra1kc24rhxfzhh2"; depends=[]; }; nmadb = derive2 { name="nmadb"; version="1.2.0"; sha256="17r5vc57ilhy6cfcqpfyp9nzzjaa5gc8qkgfn3y8sppqh1g1mi40"; depends=[devtools jsonlite RCurl readxl]; }; - nmathresh = derive2 { name="nmathresh"; version="0.1.5"; sha256="0ndrkd68wkkj0ib0qamfmawfy4j07cg1nx4rx32amx2j0rc851yl"; depends=[ggplot2 gridExtra gtable Matrix nnls]; }; - nmfem = derive2 { name="nmfem"; version="1.0.5"; sha256="0hlddml20bp38yp1dji3l9mc1vnzmdrj6myf19n9p9xb85a30b9c"; depends=[capushe d3heatmap dplyr mixtools plyr tidyr]; }; + nmathresh = derive2 { name="nmathresh"; version="0.1.6"; sha256="1jrf7k7an5y867k40aj28ib7vrjyqky2cslwzmfx28snp8ns1vd3"; depends=[ggplot2 gridExtra gtable Matrix nnls]; }; nmfgpu4R = derive2 { name="nmfgpu4R"; version="0.2.5.2"; sha256="05066rgbbp6kj2d67nzf3d1pf32gypz9ammz4ba88yxblydb3cwk"; depends=[Matrix Rcpp SparseM stringr]; }; nmixgof = derive2 { name="nmixgof"; version="0.1.0"; sha256="0cbwrsxrcf8pn4ycn6r0z8jdidw5l6kdvwyrks69fq4pjzx988d6"; depends=[Rcpp unmarked]; }; nmslibR = derive2 { name="nmslibR"; version="1.0.4"; sha256="1fw565n4128nswl2qx248ab60is98iqijq5blwskxc9hjddf95a4"; depends=[KernelKnn Matrix R6 Rcpp RcppArmadillo reticulate]; }; nmw = derive2 { name="nmw"; version="0.1.4"; sha256="1vj7b2p40x0h3xp45qzar86i9439mj8y3r5hnlbwa025jqdf2g0q"; depends=[numDeriv]; }; - nnGarrote = derive2 { name="nnGarrote"; version="1.0.2"; sha256="1rci3m362wlis8z9afbkcr9vk0ihvay389cq4c8jd9gmcwdrv61g"; depends=[caret glmnet multicool]; }; - nnTensor = derive2 { name="nnTensor"; version="1.0.4"; sha256="1br3jcj79crrb7s22pjp0pxxkni8fagqkr96xb9sbf2dszyva15b"; depends=[fields ggplot2 plot3D rTensor tagcloud]; }; + nnGarrote = derive2 { name="nnGarrote"; version="1.0.3"; sha256="0icnlqi6859q28gw7l7n75nlfkrf8cbxxn8lq031614hvvhgjs9k"; depends=[caret glmnet multicool]; }; + nnTensor = derive2 { name="nnTensor"; version="1.0.5"; sha256="1zcf5ihggmhqcdnwbsqg5bxr86yyivy6zgqvfwg1jvpygk2bfqy0"; depends=[fields ggplot2 plot3D rTensor tagcloud]; }; nna = derive2 { name="nna"; version="0.0.2.1"; sha256="17cz1jf7iv61wspqldfdwbdjhlr0wq09idkzlivfb8aik5w9f0z5"; depends=[]; }; - nnet = derive2 { name="nnet"; version="7.3-13"; sha256="1z0rj5cm4ycw1y0gd5wwwg8c2298v90iybgqdqh17967jbi2125f"; depends=[]; }; + nnet = derive2 { name="nnet"; version="7.3-14"; sha256="1bzl62p5awva5kxcncs6lrdrkqp9ljd993zia731ckfpcjbrw6sx"; depends=[]; }; nnetpredint = derive2 { name="nnetpredint"; version="1.2"; sha256="1c6s9wm6vhylwv4xhp2hkllw18zj8hdr17ls9vlxm9qs3wx1v48w"; depends=[RSNNS]; }; nnfor = derive2 { name="nnfor"; version="0.9.6"; sha256="0bciy6k79g7abvj3pmmdc4wzg5mp11zgmdbx17x4by993p2clhw9"; depends=[forecast glmnet MASS neuralnet plotrix tsutils uroot]; }; - nngeo = derive2 { name="nngeo"; version="0.3.7"; sha256="1xyj5zjhim2scigkr4ycz7ma18a0sgi60jrhrcv9rnn2fg1hx5c7"; depends=[lwgeom RANN sf units]; }; + nngeo = derive2 { name="nngeo"; version="0.3.9"; sha256="1dq3gwz0bhvxvfzcnnw4jcjs8zvg9jf5f7k89cz2vd9waw6s6w1d"; depends=[lwgeom RANN s2 sf units]; }; nnlasso = derive2 { name="nnlasso"; version="0.3"; sha256="1n7karlmgq61z9ywfx9xb5wvmxx40ydpnzzazj1xr70qlv5m0qk4"; depends=[]; }; + nnlib2Rcpp = derive2 { name="nnlib2Rcpp"; version="0.1.4"; sha256="0cg2sh0pvkfcmsp76c2biz84lqh4zrspshrvhlsxgziavhcmr4wc"; depends=[Rcpp]; }; nnls = derive2 { name="nnls"; version="1.4"; sha256="07vcrrxvswrvfiha6f3ikn640yg0m2b4yd9lkmim1g0jmsmpfp8f"; depends=[]; }; nnt = derive2 { name="nnt"; version="0.1.4"; sha256="1rrqq8m3plsq13hsh53h948wbx37gl87hplj4ms2pxxf1zwqsmnj"; depends=[survival survRM2]; }; + nntrf = derive2 { name="nntrf"; version="0.1.3"; sha256="1b9610wy7s1gnvi9x34nm50ijkgfa98xfrdymww019gq2nib7q2g"; depends=[FNN NeuralNetTools nnet pracma]; }; noaaoceans = derive2 { name="noaaoceans"; version="0.2.0"; sha256="1hvjkma14kl8f69ichk27ddxlg9cqnzif8x43ckxyny6h341bbkf"; depends=[httr jsonlite rvest xml2]; }; noaastormevents = derive2 { name="noaastormevents"; version="0.1.1"; sha256="1ra852r5hw1ng3f4jk866jx0z2dszwvbidmfrdjchv9bfrjwmlmx"; depends=[choroplethr choroplethrMaps data_table dplyr forcats ggplot2 htmltab hurricaneexposure lubridate maps plyr RColorBrewer rlang stringr tidyr viridis XML]; }; - noctua = derive2 { name="noctua"; version="1.6.0"; sha256="1gdlfjgxrhkdp8klis2rz60hvldw5qlzhrcp8frbyjvb8qa83b76"; depends=[data_table DBI paws]; }; + noctua = derive2 { name="noctua"; version="1.8.0"; sha256="0md9yhqgikaqhack9b72hds68a0x647y7phkn4mgirzf2cihakly"; depends=[data_table DBI paws]; }; nodbi = derive2 { name="nodbi"; version="0.4.0"; sha256="1jlqzj9lv9wnsb8hwy8y91369i6ykp8av35abakfpxg0302svay9"; depends=[data_table jsonlite]; }; nodeHarvest = derive2 { name="nodeHarvest"; version="0.7-3"; sha256="0nh3g50rk9qzrarpf29kijwkz9v60682i0ag77j2ipyvhhbpwpkc"; depends=[quadprog randomForest]; }; + nodiv = derive2 { name="nodiv"; version="1.4.0"; sha256="1k7pr9d1mgxw3szxcmnkkz498x7629wf2z65qlclywka3xgzpkxc"; depends=[ape picante raster sp vegan]; }; nofrills = derive2 { name="nofrills"; version="0.3.0"; sha256="18hryq6clywlr2f45az6ryslkkarly45nacln4bwk6ip0yfl5s98"; depends=[rlang]; }; noia = derive2 { name="noia"; version="0.97.1"; sha256="0yldfmnb4ads4s9v9cj1js8zf1w1hxasqq6qjyzwknmvmp7kh62h"; depends=[]; }; noise = derive2 { name="noise"; version="1.0"; sha256="1a48s9vpz3nc058966lad8hydmg7z0vbzfwcf6nxc9g3c8mw4nig"; depends=[preprocessCore]; }; noisyCE2 = derive2 { name="noisyCE2"; version="1.0.0"; sha256="11cf7b472i6lsb4kh04rhp5mhj7l8ig0kxmkz05kazkr6cs41s6i"; depends=[magrittr]; }; - nomclust = derive2 { name="nomclust"; version="2.1.4"; sha256="02zmkcv41zbbdz62wmrg4hj7dqcp5q8bd0rwyaq57p4630lcv02m"; depends=[cluster plyr]; }; + nombre = derive2 { name="nombre"; version="0.2.0"; sha256="1ybrd052mvgx3pwf7kknvx9hvxa5y26hy44cgcjdqq35kxl50xlp"; depends=[]; }; + nomclust = derive2 { name="nomclust"; version="2.1.6"; sha256="1jgb2bd9wc7hvvnkzh9jfcw3biiqfx9mi6qrw2qslab4r48binzs"; depends=[cluster plyr]; }; nomisr = derive2 { name="nomisr"; version="0.4.3"; sha256="0p1vc6qzs7lyflw9jndimylv614dny27nz18xkmay2419vwh463f"; depends=[dplyr httr jsonlite readr rlang rsdmx snakecase tibble]; }; - nomnoml = derive2 { name="nomnoml"; version="0.1.0"; sha256="0yzbs9by2fvwvxpl2xzjikzcjv8dvcr5v2v82ibz5jpnnsbl1ac4"; depends=[htmlwidgets png webshot]; }; + nomnoml = derive2 { name="nomnoml"; version="0.2.0"; sha256="10xy9738jqx45qx27lzlqairirs122c5n3dx7kbsq1b6ilmalqbp"; depends=[htmlwidgets png webshot]; }; nomogramEx = derive2 { name="nomogramEx"; version="3.0"; sha256="16235rwblnzn8k53817llwy2pzhnpifh6ij159nxymjm8ar9qpbp"; depends=[pracma rms]; }; nomogramFormula = derive2 { name="nomogramFormula"; version="1.2.0.0"; sha256="1j6g5kndl0n2g8acwq8pn09sk0bjcsphbcd77ha1j5dnwdmy73c0"; depends=[do Hmisc rms]; }; noncompliance = derive2 { name="noncompliance"; version="0.2.2"; sha256="1lcybgj95z7lz7p26xbsdiv0vvms4ab4f8kad0pclacf1l43v0j6"; depends=[data_table Rcpp]; }; noncomplyR = derive2 { name="noncomplyR"; version="1.0"; sha256="1a9m6r9cizw42nmy24jdsrsbllg5z84fs8b239axnh1fxzskg2qy"; depends=[MCMCpack]; }; nonet = derive2 { name="nonet"; version="0.4.0"; sha256="1043vplj8libbzll172h82dfwnz2lsdba5na2g9liryg8p08h4v8"; depends=[caret dplyr e1071 ggplot2 glmnet pROC purrr randomForest rlang rlist tidyverse]; }; nonlinearICP = derive2 { name="nonlinearICP"; version="0.1.2.1"; sha256="1m9a1f0yrbjl0nx2l7r76pyi78b2bxj8v4jx92yga91f975mw6np"; depends=[caTools CondIndTests data_tree randomForest]; }; - nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.2.8"; sha256="0m1pmw1vj6qsn5iavxbcpjlx5higp2viqvah5ivxxbvf0595zy1v"; depends=[Matrix Rcpp RcppArmadillo rgl TSA tseries zoo]; }; + nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.2.10"; sha256="1zhp06az5pz7133253h18wwy77vpky4g0gi636v42p9dh0dzzvbm"; depends=[Matrix Rcpp RcppArmadillo rgl tseries zoo]; }; nonmem2R = derive2 { name="nonmem2R"; version="0.2.1"; sha256="0a7h9wb8dqjgzyk4hd9ivhy90n80wrrp4zkrxnvgfvza1619qd52"; depends=[ggplot2 gridExtra lattice latticeExtra MASS mvtnorm reshape2 splines2]; }; nonmemica = derive2 { name="nonmemica"; version="0.9.1"; sha256="0hhrg29wjqhb5pk13scg2zgqzzhf5azvfbph0rrfdb5qkj585awd"; depends=[csv dplyr encode lazyeval magrittr metaplot rlang spec tidyr xml2]; }; nonneg_cg = derive2 { name="nonneg.cg"; version="0.1.6"; sha256="15361k0kjy1465s8pr9jb5jy22mibi37zcnza7mbfh5l66hr29kh"; depends=[Rcpp]; }; - nonnest2 = derive2 { name="nonnest2"; version="0.5-3"; sha256="1mnv4pa583ir9s03h952hk40lwdywr3g88g76sk1zsa54rcmn82c"; depends=[CompQuadForm lavaan mvtnorm sandwich]; }; - nonpar = derive2 { name="nonpar"; version="1.0.1"; sha256="0pxks3nga7jrcvq0pzr1axj3a9xvzky836fl7966a09ws1vff7i4"; depends=[]; }; + nonnest2 = derive2 { name="nonnest2"; version="0.5-5"; sha256="1ddaqwx8i3ygwvxf11mc8xhgk4nkvnail99nr5szq8i168752zq2"; depends=[CompQuadForm lavaan mvtnorm sandwich]; }; + nonpar = derive2 { name="nonpar"; version="1.0.2"; sha256="0gflldd3kjbpdlvbwi073igj6shcqr9g5x6zcp5gfa12404qpflq"; depends=[]; }; nonparaeff = derive2 { name="nonparaeff"; version="0.5-8"; sha256="1kkn68m7cqlzx3v539cjxw3x5a2y86lvmyv2k98s87m3yvqg0gdk"; depends=[gdata geometry Hmisc lpSolve psych pwt rms]; }; nontarget = derive2 { name="nontarget"; version="1.9"; sha256="0ndqcr73sja5ks5kdahhakpz9lw3rp26imklagdv4f5agqnb608s"; depends=[enviPat mgcv nontargetData]; }; nontargetData = derive2 { name="nontargetData"; version="1.1"; sha256="07cdbpmn64sg4jfhljdcx503d55azyz58x7nkji044z3jmdryzqw"; depends=[]; }; @@ -11054,9 +11474,10 @@ in with self; { norris = derive2 { name="norris"; version="0.1.1"; sha256="07pflm5nc9rxi5zvi394c9y8h9hmhsvn4ya4ghlr9y6yxzwrz0l1"; depends=[dplyr httr jsonlite stringr]; }; nortest = derive2 { name="nortest"; version="1.0-4"; sha256="17r0wpz72z9312c70nwi1i1kp1v9fm1h6jg7q5cx1mc1h420m1d3"; depends=[]; }; nortestARMA = derive2 { name="nortestARMA"; version="1.0.2"; sha256="11ala9z0snsbn1xmj9yzs4kyh9js1w19x0dnnmh5cbr9bi7aag50"; depends=[astsa]; }; + nortsTest = derive2 { name="nortsTest"; version="1.0.0"; sha256="15s7shl7gxhfyi5qc86wbwggkk3axhglbc15ba1wk8r40fwhjv2s"; depends=[forecast ggplot2 gridExtra MASS nortest tseries uroot zoo]; }; nos = derive2 { name="nos"; version="1.1.0"; sha256="0hbncama8cx8q0rc56bil38fbj33z49v4d6zdkvxs6wgmmglnrfs"; depends=[dplyr gmp]; }; nose = derive2 { name="nose"; version="1.0"; sha256="17l78vmfqc22inq6zaqpnk2m91wp0nfjbbwfcpfqykf8lk9ipqna"; depends=[]; }; - nosoi = derive2 { name="nosoi"; version="1.0.2"; sha256="1inmcbl39msfbw7f055p1qrpnpj4hi27anlbj6ig86jpkbjp5b2q"; depends=[data_table dplyr magrittr raster reshape2 stringr]; }; + nosoi = derive2 { name="nosoi"; version="1.0.3"; sha256="0mz36r44s9l8qsiwvq0v3kd3czj1mngasq93bn9x1whbfqq590fk"; depends=[data_table raster]; }; not = derive2 { name="not"; version="1.2"; sha256="1671j3yirzdyhb02khx1yddslyig5jlnb0bdbgdlkb21n4zwaqa4"; depends=[]; }; notifyR = derive2 { name="notifyR"; version="1.02"; sha256="0jx76ic5r1crcgg0n0yqnka0gwniflfxakh838a98j9wb11wi6h5"; depends=[RCurl rjson]; }; notifyme = derive2 { name="notifyme"; version="0.3.0"; sha256="0b6xrv6c4id7rs0dafg96pl4brn4yma5xh9wjz78ql44bg3w5s91"; depends=[dplyr httr magrittr]; }; @@ -11073,7 +11494,7 @@ in with self; { nparsurv = derive2 { name="nparsurv"; version="0.1.0"; sha256="1qy9qkkpqrk49vjxbyvl25i4kfk0py6v64izd8lmaw38dynybpy2"; depends=[survival TH_data]; }; npbr = derive2 { name="npbr"; version="1.6"; sha256="1jvq4snwrwjhhjgm8n8yxd5y94ks5zzi0xwdn931yp300qnikyzc"; depends=[Benchmarking np quadprog Rglpk]; }; npcopTest = derive2 { name="npcopTest"; version="1.03"; sha256="1kpa3avi95aa93y038f4zqhhdp8vdscdk0c6397qmqjg34hf1dnr"; depends=[]; }; - npcp = derive2 { name="npcp"; version="0.1-11"; sha256="0zkf01rv065x6sg8b8yal6125wbvjzaris5l9ghn2279q1fwdqz3"; depends=[]; }; + npcp = derive2 { name="npcp"; version="0.2-2"; sha256="187vz2nvv7352qv9nry96rcjf0w4zi19xhpbg0jljbqqjfn7abi5"; depends=[]; }; npcure = derive2 { name="npcure"; version="0.1-5"; sha256="0hf6w8w76qmjdsd6zgg85jj5ypmmg1a1ryzqwnxcypsdjxaq539z"; depends=[permute zoo]; }; nph = derive2 { name="nph"; version="2.0"; sha256="037vh3x3zlgg7jcbbwvcrlhm38d17zgz0m6d54y84mcclzzyc746"; depends=[ggplot2 mvtnorm]; }; nplplot = derive2 { name="nplplot"; version="4.5"; sha256="1dpbs0jb34gv0zj528357z1j2pwahjbp04rm7jir6qk0jhyaxxgh"; depends=[]; }; @@ -11085,34 +11506,34 @@ in with self; { npordtests = derive2 { name="npordtests"; version="1.2"; sha256="1axzcyy45h3rs67m0i3cvwbmza1mnmraxan9j4zlpxdd5x9nz4h8"; depends=[]; }; nppbib = derive2 { name="nppbib"; version="1.1-0"; sha256="1dcqcf2jhlz3n4d2kjix8wray9c7yaawfdbdg9lcrih1m7b8gmsy"; depends=[]; }; npphen = derive2 { name="npphen"; version="1.1-0"; sha256="0pbf9sqdapl5q09g1hj5hi4j2wigrd0b6s0gbv1gx4wn68alrals"; depends=[ks lubridate raster rgdal rts snow]; }; - npreg = derive2 { name="npreg"; version="1.0-1"; sha256="0fsx71hc26zc26rwnvmmbrcy970xq92s63zllfa2q81c3jyf2qsh"; depends=[]; }; + nprcgenekeepr = derive2 { name="nprcgenekeepr"; version="1.0.3"; sha256="148fq935x7dmw754qgkkgka5hd2xdmh2cn1d5g2azzgx974zndzv"; depends=[anytime futile_logger htmlTable lubridate Matrix plotrix readxl Rlabkey shiny shinyBS stringi WriteXLS]; }; + npreg = derive2 { name="npreg"; version="1.0-4"; sha256="1fa2lna6l49x08f61d7y4qxv9bw0vml19zilfnl253djsqf7q37s"; depends=[]; }; + npregderiv = derive2 { name="npregderiv"; version="1.0"; sha256="1k873cs3rs15l13z8017n4anacandx7di6yk1zlamcc5p3vlh59n"; depends=[]; }; npregfast = derive2 { name="npregfast"; version="1.5.1"; sha256="0s9ci3nybzwykrgi9z2rqp6l15mqbxf759ks0clvkbm7wxv3whk5"; depends=[doParallel foreach ggplot2 mgcv sfsmisc shiny shinyjs wesanderson]; }; nprobust = derive2 { name="nprobust"; version="0.3.0"; sha256="0nb2ca6ljg1c2jmjhxrpfynrvmjzp5zr8dxwyhdhzl0smrkjybj4"; depends=[ggplot2 Rcpp RcppArmadillo]; }; nproc = derive2 { name="nproc"; version="2.1.5"; sha256="1p5wjz0rafg27fsl48l9pmki3px1k0pav3ignz4swik5i1nhnc8w"; depends=[ada e1071 glmnet MASS naivebayes randomForest ROCR tree]; }; - nprotreg = derive2 { name="nprotreg"; version="1.0.0"; sha256="06n82i5m7sgfj759zdwwh8fqybkbchvnaaqcds64m6hbms592bh3"; depends=[expm]; }; - npsf = derive2 { name="npsf"; version="0.5.2"; sha256="0iz4dh2cv1bi90wdf08x70rdm44xmzblck69rlg7vnsb6n2q2is9"; depends=[Formula randtoolbox Rcpp sfsmisc]; }; + nprotreg = derive2 { name="nprotreg"; version="1.0.1"; sha256="1bjrnbfzs7h3q424d1kxlvb29ppnxf0dw7hsx2gn5bygz1zgm54h"; depends=[]; }; + npsf = derive2 { name="npsf"; version="0.7.1"; sha256="03rfcnkfk1magcjvrjc96qxngw840sgiasl5yklhgiigz4nnqvi5"; depends=[Formula Rcpp]; }; npsm = derive2 { name="npsm"; version="0.5.1"; sha256="00xh3x731lqb5vbzmfmlldrvc8s4s88dc394iifsn2g7r5naxks0"; depends=[plyr Rfit]; }; npsr = derive2 { name="npsr"; version="0.1.1"; sha256="1fzvilzjg9z05991sr1s1bdp17kfl6d1580qdllk8is9ac06np0v"; depends=[gmp infotheo MASS]; }; npst = derive2 { name="npst"; version="2.0"; sha256="1y5ij3nmh9pj6p97jpx75g26sk508mznr0l67cwj381zfb77hj1n"; depends=[]; }; - npsurv = derive2 { name="npsurv"; version="0.4-0"; sha256="1wq4c9yfha5azjhrn40iiqkshmvh611sa90jp3lh82n4bl9zfk20"; depends=[lsei]; }; npsurvSS = derive2 { name="npsurvSS"; version="1.0.1"; sha256="0k9xvxii5527vynf7yy50j7z4jhxgk5ydhdcaaygm9ynx5yq14ip"; depends=[]; }; nptest = derive2 { name="nptest"; version="1.0-0"; sha256="13h93sx5fsbfiy3q88j4bl0p3hwqzi8l4ab0r0qha78dzd6skq2v"; depends=[]; }; nricens = derive2 { name="nricens"; version="1.6"; sha256="0fpgp6k3mhb0qxbx6248k9bscnmlzwj70mqh631a1nc4cpdjvw3q"; depends=[survival]; }; nsRFA = derive2 { name="nsRFA"; version="0.7-15"; sha256="004dm143v032b80knpz7pj3z71lci7vgd6hz1zz22rpfg27ghgdd"; depends=[]; }; nsROC = derive2 { name="nsROC"; version="1.1"; sha256="1fi7k61fja98kpn528jprjdycwz01rnqm368m82anxh21k7q4s1m"; depends=[sde survival]; }; nsapi = derive2 { name="nsapi"; version="0.1.1"; sha256="06xf2p6f911vwpzky47r35fjgjvlhp13p9pf1zlvjrv66kdw8vbp"; depends=[crul xml2]; }; - nsarfima = derive2 { name="nsarfima"; version="0.1.0.0"; sha256="0iw1daha6c2l4zmqa0m917kgbx3d7mh7bhwbrsyxmvr5qs81drhk"; depends=[]; }; + nsarfima = derive2 { name="nsarfima"; version="0.2.0.0"; sha256="0sv63anrsh0ajfvvkb44zsvc7sxws3xpsgwxqa951gy98w8h58g5"; depends=[]; }; nscancor = derive2 { name="nscancor"; version="0.6.1-25"; sha256="183kvzlln5lhmi51dm0skq1165c3hhy1yz5h2g7nxwqk2b4p23xj"; depends=[]; }; nse = derive2 { name="nse"; version="1.19"; sha256="107ri9325ga4kgvs5a3j3698dc3m4v28cb02ypc4dan6f3fa9h8i"; depends=[coda mcmc mcmcse np Rcpp sandwich]; }; - nse2r = derive2 { name="nse2r"; version="0.1.1"; sha256="09mj8qjjzsg9x65f9wky8y5gvjslkkg9j8vy9mpp4j9dxl0z2mi6"; depends=[httr jsonlite magrittr purrr rvest shiny stringr tibble xml2]; }; + nse2r = derive2 { name="nse2r"; version="0.1.2"; sha256="1rbcqz8zighy0vqi04lh93f2ggwlqhjvvn7f0627m5gp6ph2bdyh"; depends=[jsonlite magrittr rvest xml2]; }; nseval = derive2 { name="nseval"; version="0.4"; sha256="18avir5zllvm2sbi9616k7dlb8yxhvnbji7xshr4kcfvy1fvn2ia"; depends=[]; }; nsga2R = derive2 { name="nsga2R"; version="1.0"; sha256="04jj0a3isfc348vg46il5x9l33cr7xawz5w0mm4pwr6djhd8nfhx"; depends=[mco]; }; nsga3 = derive2 { name="nsga3"; version="0.0.3"; sha256="1jv3kw22jw24n7lnwhq3857mygr2yfv8c5xp3lbqqgz5840cdfa1"; depends=[mlr parallelMap rPref xgboost]; }; nsgp = derive2 { name="nsgp"; version="1.0.5"; sha256="0piajjz3r71dnjw7lwpjhbaygxcrbbxfvhf8p3n2izyr2pw5fml9"; depends=[MASS]; }; - nspmix = derive2 { name="nspmix"; version="1.4-0"; sha256="1cd133ncnr4g0n6w4c44q6mda8y1n7cfmsgy1x1kczvwp7cm9kk2"; depends=[lsei]; }; nsprcomp = derive2 { name="nsprcomp"; version="0.5.1-2"; sha256="1zlc1ximx96f235c0l8qfs6vbp1kpnbf943wxsfahnnlnxvwi59f"; depends=[]; }; - nsrr = derive2 { name="nsrr"; version="0.1.3"; sha256="11g0xgznd2n29cc9zxr0rrkqhxhjnp277gb7z871kgk6qnjswpwv"; depends=[digest httr jsonlite]; }; - nucim = derive2 { name="nucim"; version="1.0.6"; sha256="0bw9a2xz2w5jlr2qlbia6jfm2yp09n3gzg8a630p1ks75xvlmkbx"; depends=[bioimagetools EBImage fields stringr]; }; + nsrr = derive2 { name="nsrr"; version="0.2.0"; sha256="1x1c7pvyfvzmaymxcz6ghr5002wz48796c3hsihwbx6951w623sq"; depends=[digest httr jsonlite]; }; + nucim = derive2 { name="nucim"; version="1.0.9"; sha256="19vj1xkzw1b02lyfsf7c9s37jcv95bs30larlzj3074jdf4jznsm"; depends=[bioimagetools EBImage fields stringr]; }; nullabor = derive2 { name="nullabor"; version="0.3.9"; sha256="19nfmsnzndg9pdjg7m9w4vm4c3209ny52cpjdhmmhggvf7dxaiyg"; depends=[dplyr forecast fpc ggplot2 magrittr MASS moments purrr rlang tibble tidyr tsibble viridis]; }; numDeriv = derive2 { name="numDeriv"; version="2016.8-1.1"; sha256="0idk02pqkziik932bd8k72d1q775g1is3m4bc861pcxfz6gx3i6q"; depends=[]; }; numGen = derive2 { name="numGen"; version="0.1.1"; sha256="1y41wq31r8126dz1sj23smq2k6v9yqczq4ddgzqb73dsrx9dmmc0"; depends=[]; }; @@ -11123,12 +11544,13 @@ in with self; { numform = derive2 { name="numform"; version="0.6.0"; sha256="0v19dcr5xwi0bf4s0qwipxpmxbw42l2li1h9i73kdrigznhlqq8h"; depends=[glue]; }; nutriNetwork = derive2 { name="nutriNetwork"; version="0.1.1"; sha256="0ya95h88jkiwc7cg7ic8bmyd7b0lgnhxrywwqvi2j6m6nbvvaxzy"; depends=[glasso huge igraph Matrix tmvtnorm]; }; nvctr = derive2 { name="nvctr"; version="0.1.1"; sha256="0hjrimg0hvwgkx2hbln6k8z0f2bp9kln7mxxh623qjp0hg4mcvcn"; depends=[magrittr pracma]; }; - nvmix = derive2 { name="nvmix"; version="0.0-3"; sha256="0dvx21nfp82s7bk5vd9xxp9979w4mq8v1hx1zxa97sv2xr4g2m5y"; depends=[Matrix qrng]; }; + nvmix = derive2 { name="nvmix"; version="0.0-4"; sha256="0srgf7zczy2bp8qqhr15mrccd6v0bksx2nkgizdh4ipr17vqzgrp"; depends=[Matrix qrng]; }; nws = derive2 { name="nws"; version="1.7.0.1"; sha256="1fn92n6brjhh8hpvhax7211cphx2cn0rl99kjqksig6z7242c316"; depends=[]; }; nycflights13 = derive2 { name="nycflights13"; version="1.0.1"; sha256="0h4jzg4q5qpvjp5b2wlk3a2mh0jhyz9c1acdjcmg70pap7fyh0fj"; depends=[tibble]; }; nzelect = derive2 { name="nzelect"; version="0.4.0"; sha256="19kcbq454yg9g76ix7v3nibgw2203d7vv6f2d6d2zkcc0h08bjm7"; depends=[]; }; - nzilbb_labbcat = derive2 { name="nzilbb.labbcat"; version="0.4-2"; sha256="0cqsqbvj8wwhcspw5m6v1r7pwlzggpskj5xg0y1yr7rsj4qw26c5"; depends=[httr jsonlite rstudioapi stringr]; }; + nzilbb_labbcat = derive2 { name="nzilbb.labbcat"; version="0.5-1"; sha256="0rshf4d0xi0cfwnpvb73d39f7zcw4ilh065lzm8gbx1ri7v64rgn"; depends=[httr jsonlite rstudioapi stringr]; }; nzpullover = derive2 { name="nzpullover"; version="0.3.0"; sha256="0b3mz5i58m48fa1x7gv4l3gqj0gvrar201ph2l1gkbcnfmazwjp8"; depends=[]; }; + oRus = derive2 { name="oRus"; version="1.0.0"; sha256="0q6hgiidcpm95pyisndihxjg78v6k1zycdqd72309aankdk0g5h4"; depends=[dplyr knitr rmarkdown stringr tibble tidytext tm topicmodels xlsx]; }; oaColors = derive2 { name="oaColors"; version="0.0.4"; sha256="040sdqrk9dciylnnrrshlj06s9qhvngii9shx1p8412ip7mk8r1m"; depends=[MASS RColorBrewer]; }; oaPlots = derive2 { name="oaPlots"; version="0.0.25"; sha256="0c5ig1ar02vg38pjjmp3gd53ij1j7pzajs0zrlfajz141qkv2ysr"; depends=[ggplot2 oaColors]; }; oai = derive2 { name="oai"; version="0.3.0"; sha256="1ipw9bq3ra66d1ddj1rylyyd20mlcb2i7phzhywra53s1fdifq1g"; depends=[httr plyr stringr tibble xml2]; }; @@ -11140,43 +11562,45 @@ in with self; { objectProperties = derive2 { name="objectProperties"; version="0.6.5"; sha256="0wn19byb1ia5gsfmdi6cj05pnlxbr3zcrjabjg3g1d7b58nz7wlh"; depends=[objectSignals]; }; objectSignals = derive2 { name="objectSignals"; version="0.10.2"; sha256="1rcgfq1i3nz2q93vv4l069f3mli1c6fd5dhhhw1p7cc4sy81008w"; depends=[]; }; objectremover = derive2 { name="objectremover"; version="0.7.0"; sha256="0mspnnks04s8w6q2g0nffd0675g07hkaql44kz6zrc5329qx7jpi"; depends=[miniUI shiny shinyalert]; }; - obliclus = derive2 { name="obliclus"; version="0.9"; sha256="000r1dx4zbgjxrfs66c1yazm0w6q2z0z1scf45g2qj5ykcm9ylma"; depends=[]; }; obliqueRF = derive2 { name="obliqueRF"; version="0.3"; sha256="1bwlgv820mmpc6vg26bsdlfy2p78586i3y42hkzbw3z1fmwq3pz5"; depends=[e1071 mda pls ROCR]; }; obliqueRSF = derive2 { name="obliqueRSF"; version="0.1.1"; sha256="1picy19mrgycfxpng5qqk7q5im3m2apx8w4jxmkslpmgg1c5q2ly"; depends=[data_table dplyr ggplot2 ggthemes glmnet missForest pec prodlim purrr Rcpp RcppArmadillo rlang scales survival tidyr]; }; obs_agree = derive2 { name="obs.agree"; version="1.0"; sha256="191xshnrncjqzwd2rdq334vsx0338q3y3k1nbm04hdaysbnla9jv"; depends=[]; }; obsSens = derive2 { name="obsSens"; version="1.3"; sha256="1vfm1mzsycwkqa39vf3fcdv1s6adps9hw1rxlvl8v9kq746hcabw"; depends=[]; }; observer = derive2 { name="observer"; version="0.1.2"; sha256="1027827k57qb4xppx0xxxffd1s3n7pz754irdx3v1v3piix8xi8m"; depends=[bazar bit dplyr lazyeval magrittr tibble]; }; + oc = derive2 { name="oc"; version="1.2"; sha256="0cw1gvz6gk8j718zmywqp03h9cnzn132nwbv45gr00xg2s9h7dk7"; depends=[pscl]; }; occ = derive2 { name="occ"; version="1.1"; sha256="1aka29qqwbd494kvi15yyyqkb9hks4ky2gcvykxhx2drm2fnsn4g"; depends=[]; }; ocd = derive2 { name="ocd"; version="1.0"; sha256="0r14w09wzyxp685jbzqj3dirnhsq106d23igl1jd5xpwbj2192n5"; depends=[]; }; oce = derive2 { name="oce"; version="1.2-0"; sha256="18ls8c8ia00dn9f9lxk01mvwqmxd1ilx1d7y59d1nixd40mjy1wr"; depends=[gsw Rcpp testthat]; }; - oceanis = derive2 { name="oceanis"; version="1.0.7"; sha256="0vlac6clq8902x3s6abl9ljwwk5a5gzxs66hij0080lj28l1wr82"; depends=[classInt dplyr DT ggplot2 leaflet leaflet_extras lwgeom mapview sf shiny shinyBS shinyjs shinythemes stringr units]; }; + oceanis = derive2 { name="oceanis"; version="1.7.5"; sha256="1mb9jrrgbkawiwa20xqy7im56gjcn0nmq4vi9mnrzrgizfid25dx"; depends=[classInt dplyr DT ggplot2 leaflet leaflet_extras lwgeom mapview sf shiny shinyBS shinyjs shinythemes stringr units]; }; oceanmap = derive2 { name="oceanmap"; version="0.1.1"; sha256="06h4yxqcn3rjr3m2n82w128z110a4k5rg6msrbd0gcqksxc4vd2v"; depends=[abind extrafont fields lubridate mapdata maps maptools ncdf4 plotrix raster sp]; }; oceanwaves = derive2 { name="oceanwaves"; version="0.1.0"; sha256="0izgnqjji3xrvv8xbpsdbrx53wdb3rg3045xx6gcknfl2fj5iky7"; depends=[bspec ggplot2 signal]; }; - ocedata = derive2 { name="ocedata"; version="0.1.6"; sha256="0rf02bx7bb00ipp23jbpj2xdmj15xzi54qw3hms3ccghmaj40a28"; depends=[testthat]; }; + ocedata = derive2 { name="ocedata"; version="0.1.8"; sha256="01m2pflk3zgqbqmv34w7mh8bs1lbpagdmhvhzji2j6p1fysvhqr1"; depends=[testthat]; }; ockc = derive2 { name="ockc"; version="1.0"; sha256="0chzrs3ipa2518r4d35z4fxffgq12p1mwj0hzkxw19gdgq6aa8s7"; depends=[flexclust modeltools]; }; oclust = derive2 { name="oclust"; version="0.1.0"; sha256="005ml6vhi9rw6js2v4f1dc2ci8kcd7iwrkgbs4c1qxc836ygq0yx"; depends=[entropy mclust]; }; ocomposition = derive2 { name="ocomposition"; version="1.1"; sha256="0fk8ia95yjlvyvmjw7qg72piqa40kcqq9wlb3flc6a81pys1ycb5"; depends=[bayesm coda]; }; ocp = derive2 { name="ocp"; version="0.1.1"; sha256="0q52s8j3z3xwnma3sxx6019qxid66bf0a43w4g8xjagplwps57dx"; depends=[]; }; ocs4R = derive2 { name="ocs4R"; version="0.1"; sha256="1sm2fl503ky4pxv9873zykidb56f7dygq1xckjsh0d7m78n4gzx5"; depends=[curl httr jsonlite openssl R6 XML]; }; - odbc = derive2 { name="odbc"; version="1.2.2"; sha256="1p30n1f6yfx80rk29l94asdi0chk4c7h6pp09aq9bbsq9g8109dq"; depends=[BH bit64 blob DBI hms Rcpp rlang]; }; + odbc = derive2 { name="odbc"; version="1.2.3"; sha256="04b9qlpycr771xip11wd2zhb1yiz7x1bl3jhqj6p4daq553snvhy"; depends=[bit64 blob DBI hms Rcpp rlang]; }; odds_converter = derive2 { name="odds.converter"; version="1.4.8"; sha256="09s8pg55gpsxmrbimzg5rsr1n07la93781sar6vab5p9zn9zxgx4"; depends=[]; }; odds_n_ends = derive2 { name="odds.n.ends"; version="0.1.1"; sha256="0kgdv4m14h4a16b0k2s2qjyjn0kxk5sf4qkbi6ikm6kqdh5ashp4"; depends=[MASS]; }; - oddsratio = derive2 { name="oddsratio"; version="2.0.0"; sha256="0lr56djlw52j3azvifcdbyn01b85jv18gm789s7skmnylrl3rgw9"; depends=[ggplot2 mgcv stringr tibble]; }; + oddsratio = derive2 { name="oddsratio"; version="2.0.1"; sha256="1db0pxi5j18rvi8dyc2xx1im3l269775vpjjavapjcv2pylfg5r0"; depends=[ggplot2 mgcv]; }; oddstream = derive2 { name="oddstream"; version="0.5.0"; sha256="1nwjw7fq6b4jdq4m2w0a7xgmzjg5a6pbma1d3r9msiz8rnhb0c54"; depends=[dplyr ggplot2 kernlab ks magrittr MASS mgcv moments mvtsplot pcaPP RColorBrewer RcppRoll reshape tibble tidyr]; }; odeintr = derive2 { name="odeintr"; version="1.7.1"; sha256="0wfb5lgv10p0qyfbn9hdg14bda37v43lpgbwv6nbw63zzbsbazqi"; depends=[BH Rcpp]; }; odin = derive2 { name="odin"; version="1.0.1"; sha256="1m1rqlh9z6hpna6qhyxhavqph3j66hbd2b5md5ha2hrbjq93yynm"; depends=[cinterpolate crayon deSolve digest jsonlite R6 ring]; }; odk = derive2 { name="odk"; version="1.5"; sha256="0fcnr4c1clwx1sk6fgg4cx506gdi90n2h05g0i47p4s5bra0qwwl"; depends=[gsheet openxlsx]; }; - odpc = derive2 { name="odpc"; version="2.0.2"; sha256="0wmra56w9k1bp27lhv6ssz400ggzmggl7l32vxkhynnxr0aphx7c"; depends=[doParallel foreach forecast Rcpp RcppArmadillo]; }; + odpc = derive2 { name="odpc"; version="2.0.3"; sha256="1lv8kn4dvwibnhzhq0safgmm6abffmjw1279acawzf3ik308m3cm"; depends=[doParallel foreach forecast Rcpp RcppArmadillo]; }; odr = derive2 { name="odr"; version="1.0.2"; sha256="0dj5piyd6h92q6agv8yvzky3qpxjn6zpgvf502hf0n6k9gx6kdpl"; depends=[]; }; + oem = derive2 { name="oem"; version="2.0.10"; sha256="1nf9ja4l7b9gnnvv216dz9siy02432qgyg930vcrqq3l8g05r6zc"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; oenb = derive2 { name="oenb"; version="0.0.1"; sha256="1x1jlqp6r27c4gb7wafzpmh5rq6yq61a2d395r5lsmv2g5jb4biz"; depends=[dplyr XML]; }; ofGEM = derive2 { name="ofGEM"; version="1.0"; sha256="0xdkl8k12an9pdy6i5nay4m2iakrwsp0lr3zl8gphii75j0ywz7k"; depends=[CompQuadForm forestplot MASS]; }; - officer = derive2 { name="officer"; version="0.3.8"; sha256="0xhx5n6qksyh2s9hvwhnc8y0hn362asc5y94ld06snad786hz0rw"; depends=[magrittr R6 uuid xml2 zip]; }; + officedown = derive2 { name="officedown"; version="0.2.0"; sha256="0v7bhcgfk8xra3w9fjrcm7vra2hjq9wm1wj2mbsa3xdknicv9yrs"; depends=[knitr memoise officer rlang rmarkdown rvg uuid xml2 yaml]; }; + officer = derive2 { name="officer"; version="0.3.12"; sha256="1wk9h6bz77s5j6lgksmlrmi1vyaa35c766gq6hgb1dp0dz0x342x"; depends=[magrittr R6 uuid xml2 zip]; }; offlineChange = derive2 { name="offlineChange"; version="0.0.4"; sha256="005afrm4ki4zz3zkgrf8c1v9gf5cjhc5g50mjkqya3r8npaccwq2"; depends=[Rcpp]; }; oglmx = derive2 { name="oglmx"; version="3.0.0.0"; sha256="13axmhbqhv4kkcdsdmp9r7p0d0kyqlsaqgyyllbkxlxb4hfz79b6"; depends=[maxLik]; }; ohenery = derive2 { name="ohenery"; version="0.1.1"; sha256="0i7cc110c30y7dm86srh2xkikkmlr28mvy0kkjxywxmiwnrsmzjq"; depends=[dplyr magrittr maxLik Rcpp]; }; ohtadstats = derive2 { name="ohtadstats"; version="2.1.1"; sha256="0hkjs322vii1dsminlkwpwi12sc9pd88jag7p4dmy6nfw2hh2d69"; depends=[lattice]; }; oii = derive2 { name="oii"; version="1.0.2.1"; sha256="1n41hikn53ikyynsravg127cw5csa8s0s1l63w5hym7c6j625ya5"; depends=[Deducer gmodels rapportools]; }; - ojsr = derive2 { name="ojsr"; version="0.1.0"; sha256="0lgpdcavk60qyqn3fprqmyi4bi43kjd8llnpb3bibx7h010kg834"; depends=[dplyr magrittr oai purrr rlang rvest stringr tidyr urltools xml2]; }; + ojsr = derive2 { name="ojsr"; version="0.1.1"; sha256="0bf0bmnqwfd7x2ggx8mkq4zkfgv9j0l2fb3k728cwg2h5nfqn9c9"; depends=[dplyr magrittr oai purrr rlang rvest stringr tidyr urltools xml2]; }; okcupiddata = derive2 { name="okcupiddata"; version="0.1.0"; sha256="1l04rr4yr73a6q2am9ylyr5prf347hkf2jx735w78rsb6472kbaq"; depends=[]; }; okmesonet = derive2 { name="okmesonet"; version="0.1.5"; sha256="1kzyzmg702ayzphn9jsk64m51mlnz37ylxiwq5gsr23vaiida680"; depends=[plyr]; }; olctools = derive2 { name="olctools"; version="0.3.0"; sha256="1gbchwynvmryarz32f24v56kj57h7x6nrrm878fkjkpq140cqwzz"; depends=[Rcpp]; }; @@ -11185,10 +11609,11 @@ in with self; { olsrr = derive2 { name="olsrr"; version="0.5.3"; sha256="0rh1jb0z0ypspzcp4vbpzjz960yj76myk2j4zb1vi9gnnj3clw8y"; depends=[car data_table ggplot2 goftest gridExtra nortest Rcpp]; }; omd = derive2 { name="omd"; version="1.0"; sha256="0s1wcgivqapbkzjammga8m12gqgw113729kzfzgn02nsfzmsxspv"; depends=[]; }; omics = derive2 { name="omics"; version="0.1-5"; sha256="1y2x33mfgq98nglhvpr1wq1v6nfiq4njy2yac47x72rpwxsj9vb1"; depends=[lme4 pheatmap]; }; - omicwas = derive2 { name="omicwas"; version="0.3.1"; sha256="14vx9mhy51ma05m85plsnx53rhq1rd4nw9709sf8ibc55gdrfg5l"; depends=[broom data_table dplyr ff glmnet magrittr MASS matrixStats PCDimension R_utils ridge rlang sva tidyr]; }; + omicwas = derive2 { name="omicwas"; version="0.7.0"; sha256="0i3d6qkcv6xsmb2fq0sf9dn7mqh4rzq01326zbzf5p5y2f5gfipp"; depends=[broom data_table dplyr ff glmnet magrittr MASS matrixStats PCDimension rlang sva tidyr]; }; + omopr = derive2 { name="omopr"; version="0.2"; sha256="1ng94jnarj7pszxzvdlnrr2dbcvv5p5yrscjw6ihqkskpraw9f7w"; depends=[DBI dbplyr dplyr RSQLite]; }; ompr = derive2 { name="ompr"; version="0.8.0"; sha256="1nmd5wa1g2xzmwqfqf882bxcrmkxbb5b414cbbzvmqzfs34yk6bl"; depends=[data_table lazyeval Matrix progress Rcpp rlang]; }; ompr_roi = derive2 { name="ompr.roi"; version="0.8.0"; sha256="1cbrchvpd31lxpxvw2l3q9k5jmffarb1shca8kwm76y5a6zxxq63"; depends=[Matrix ompr ROI slam]; }; - omu = derive2 { name="omu"; version="1.0.2"; sha256="03mj5xk447gadsnvqrm97cjcyfq4xzkgc46kw85gishv7w9qmqrk"; depends=[dplyr ggfortify ggplot2 KEGGREST magrittr plyr reshape2 stringr tidyr]; }; + omu = derive2 { name="omu"; version="1.0.4"; sha256="03dvbgxf5d181wka0gpf3sr008fzzva57xvdniynbgqskgcn4qi3"; depends=[dplyr ggfortify ggplot2 KEGGREST magrittr plyr reshape2 stringr tidyr]; }; oncomodel = derive2 { name="oncomodel"; version="1.0"; sha256="1jyyq9znffiv7rg26mjldbwc5yi2f4f8npsd2ykhxyacb3g96fp1"; depends=[ade4]; }; oncrawlR = derive2 { name="oncrawlR"; version="0.2.0"; sha256="0cm26diaf3jlzfrpgh13q0hakakmj6vy41wk9z0w81az4jcg9sn9"; depends=[caret DALEX dplyr e1071 formattable fs ggplot2 htmltools jsonlite pdp pROC RCurl readr rjson rlang rlist scales sparkline tidyr webshot xgboost]; }; onehot = derive2 { name="onehot"; version="0.1.1"; sha256="1cdsz007wr054k5phvihhg4qx0fc039k2s6484m92kws8mb2ziix"; depends=[]; }; @@ -11208,33 +11633,32 @@ in with self; { oolong = derive2 { name="oolong"; version="0.3.4"; sha256="1zhgk9y1iy90kn6kwx2r80jy6fymgkd59c03xx936sijk0wnpwrq"; depends=[cowplot digest dplyr ggplot2 irr miniUI purrr quanteda R6 shiny stm text2vec tibble]; }; oompaBase = derive2 { name="oompaBase"; version="3.2.9"; sha256="1cmw2s5dznmv675484jgvkzgvi6vhg0zbxsq6zhpqsisf672pjhl"; depends=[cluster]; }; oompaData = derive2 { name="oompaData"; version="3.1.1"; sha256="0by9qfxlx6fdmp12qnphlli5hdn5balvx4ckg64fw6vwa291g7b0"; depends=[]; }; - opalr = derive2 { name="opalr"; version="1.3.0"; sha256="029sxy31in377p7s25y601vmdhcxxs6cn36xvqhkxcx15j96mprp"; depends=[httr jsonlite mime progress xml2]; }; - opart = derive2 { name="opart"; version="2019.1.0"; sha256="0yw4vlip4whhvp23yjr57h5j0ii8ighp77g3fjjzr3l56slmrmcz"; depends=[]; }; + opalr = derive2 { name="opalr"; version="1.4.1"; sha256="0rvk36mpgpw9lmx0jiyvzg04mrmdhv7v88akjihj0dfr23wf48gp"; depends=[httr jsonlite mime progress xml2]; }; openCR = derive2 { name="openCR"; version="1.4.1"; sha256="046ijw5ss8nb0m11p7r682zi7242m0ljydnsrr3gwrnmc4ayk6xv"; depends=[abind MASS nlme plyr Rcpp RcppParallel secr stringr]; }; openEBGM = derive2 { name="openEBGM"; version="0.8.3"; sha256="120lp7fy6abj6f8g6naq4018d0dfzz6bq3dlh0xdhd4iclb7pplv"; depends=[data_table ggplot2]; }; openNLP = derive2 { name="openNLP"; version="0.2-7"; sha256="15yl74wv6w1d2wwpn1xlkkpam3c62977gnqal651fv623v29gg35"; depends=[NLP openNLPdata rJava]; }; openNLPdata = derive2 { name="openNLPdata"; version="1.5.3-4"; sha256="0j45rh9qki8r5wavaysrfsvb3wc3x8jjicqff2yi0r34j58xvlv8"; depends=[rJava]; }; - openSTARS = derive2 { name="openSTARS"; version="1.1.0"; sha256="1cjws49r22cmdax136zcy3k35yzbajkm6pyfibgcw2iqdxy1vcxg"; depends=[data_table progress raster rgdal rgrass7 sf sp SSN]; }; - openVA = derive2 { name="openVA"; version="1.0.10"; sha256="0ly0pwwj40sylv2c96siyq38j491527x4dd02xga9cnscinpbgvp"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 Tariff]; }; + openSTARS = derive2 { name="openSTARS"; version="1.2.0"; sha256="1pyxllnzwfn9x5lz07inknl56jhmwliai8bmacfzcv3ksn19ndic"; depends=[data_table progress raster rgdal rgrass7 sp SSN]; }; + openVA = derive2 { name="openVA"; version="1.0.11"; sha256="0yzq462rf4vfr2xmczb6mks8xp7n3mli95ld8mf1xkj6a2sz584q"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 Tariff]; }; openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; }; - openair = derive2 { name="openair"; version="2.7-2"; sha256="1bbhnbg9v2n3g4cnd3ryivdbid9kdcd45m0rfxr0hxbcq3a8gwmk"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tidyr]; }; - openblender = derive2 { name="openblender"; version="0.5.71"; sha256="0imk1pam0rcdwclnz66n4bvwj94l6dc63fayar3ampd8j2mxpa4q"; depends=[httr jsonlite]; }; + openair = derive2 { name="openair"; version="2.7-4"; sha256="1d5ylsj8spslrv8pflvblzkdfdbv4iz8c5qh73zs4d70k5ma9nwy"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tidyr]; }; + openblender = derive2 { name="openblender"; version="0.5.81"; sha256="01akixxj04kgrxhv04icrivfpnipnpg9j62i3y19q3jkl9846lh1"; depends=[httr jsonlite]; }; opencage = derive2 { name="opencage"; version="0.1.4"; sha256="1lqs38lml73axsjlsjkmcsb2irgs40mjrx2cn3k0bjb63qyb9hf5"; depends=[dplyr httr jsonlite memoise]; }; opencastR = derive2 { name="opencastR"; version="0.1.3"; sha256="1ljn7bzrqc2sgah1a6q2g9hi38nm8davhdc2vyzx7d40z7ysfpas"; depends=[httr jsonlite]; }; - opencpu = derive2 { name="opencpu"; version="2.1.6"; sha256="0wv357288j3wl8mgm8yr7yzm2z0hzdg7k1056smhxjlrb42bww95"; depends=[brew curl evaluate httpuv jsonlite knitr mime openssl protolite rappdirs remotes sys webutils zip]; }; + opencpu = derive2 { name="opencpu"; version="2.2.0"; sha256="1isbl9szkh1vax29czvg8b8nyw0l6f3zyj24vhkm3y7ppavj5xdw"; depends=[brew curl evaluate httpuv jsonlite knitr mime openssl protolite rappdirs remotes sys webutils zip]; }; opencv = derive2 { name="opencv"; version="0.1"; sha256="0m649g6k6cgxnljjx8czypjawbyzx7xjcg32wddxkrgi2b236lwh"; depends=[magrittr Rcpp]; }; opendatatoronto = derive2 { name="opendatatoronto"; version="0.1.3"; sha256="1rcdv2zk3ckrp2fig71lgzw5i06767qqlrdj80r4b522nxx7npyn"; depends=[ckanr curl magrittr readxl sf tibble xml2]; }; opendotaR = derive2 { name="opendotaR"; version="0.1.4"; sha256="17cygsw3nkg6zincfrcdh1509rlz3n5zrv9wvv7mjngm61sn79nf"; depends=[dplyr jsonlite lubridate]; }; - openintro = derive2 { name="openintro"; version="1.7.1"; sha256="059azlasdkmp8f54qpjf3mq5dyqakw0dgx0kx85wfdmhq38zal5n"; depends=[]; }; - openmetrics = derive2 { name="openmetrics"; version="0.1.1"; sha256="16glrs2wisfkhnhmd11554fg9yp3axkj81kmwxcw12fgsq1bk52q"; depends=[R6]; }; - openssl = derive2 { name="openssl"; version="1.4.1"; sha256="1ihz2qi33lhngl19xdanq0pbmfaacy63794mg8ll7z2lab3yryzp"; depends=[askpass]; }; + openintro = derive2 { name="openintro"; version="2.0.0"; sha256="1pr24cph9vxp0d0k1pmyk3kwzbj5jb96nkvsm6n1ky79msiax9fm"; depends=[airports cherryblossom ggplot2 rmarkdown tibble usdata]; }; + openmetrics = derive2 { name="openmetrics"; version="0.2.0"; sha256="0ia33f0p7k1zl22b9kqsggaakdr3npfm0q0jabk0s1ih9bxpv15h"; depends=[R6]; }; + openssl = derive2 { name="openssl"; version="1.4.2"; sha256="17fkc6pr8w5z3rpadg692a689p1v4j7xl5ak0y64is7c74cxgljx"; depends=[askpass]; }; opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; }; - opentripplanner = derive2 { name="opentripplanner"; version="0.2.1.0"; sha256="0qml2mwpmbp91w2c6aynyssfffp88jdz995gh8j4pj7150bvsihy"; depends=[checkmate dplyr geodist googlePolylines httr jsonlite pbapply sf]; }; - openxlsx = derive2 { name="openxlsx"; version="4.1.4"; sha256="1mwxldw9i9nfksx1i6h1kfs7vmsz9fgyllbsipar4vnfyqhqp8q7"; depends=[Rcpp stringi zip]; }; + opentripplanner = derive2 { name="opentripplanner"; version="0.2.3.0"; sha256="10vhwpsvn6470878r3xp80pw8rx8mxjznbfrh0c0s3f11wnkdmdn"; depends=[checkmate dplyr geodist googlePolylines httr jsonlite pbapply sf vctrs]; }; + openxlsx = derive2 { name="openxlsx"; version="4.1.5"; sha256="0wkpa3wsd8rs0pib7cp67iv0s6jn99frcrw7clypqxmvvdwyb9kq"; depends=[Rcpp stringi zip]; }; opera = derive2 { name="opera"; version="1.1"; sha256="1nvm7a1g0pzzlpyk7g5plys1byl4xq2wz59hqys5gxiq0y5sgqwm"; depends=[]; }; operator_tools = derive2 { name="operator.tools"; version="1.6.3"; sha256="1v4dg7xhz24dnp0zxn815x1405ig64ibii6y40la1gvmzcc41dz5"; depends=[]; }; operators = derive2 { name="operators"; version="0.1-8"; sha256="0zgcv2q46qyqv4dhbd33s4044zjw38w8dqfpzs0c1lxjpkil3dnx"; depends=[]; }; - oppr = derive2 { name="oppr"; version="1.0.1"; sha256="17jmwag893ccl9x9xixig91yamb8xl8g8ahbdrhcnrr8jnxnswi2"; depends=[ape assertthat cli ggplot2 lpSolveAPI magrittr Matrix proto Rcpp RcppArmadillo RcppProgress tibble tidytree uuid viridisLite]; }; + oppr = derive2 { name="oppr"; version="1.0.2"; sha256="1swwb0p7lwladircp2zm78yhjy6kkl7r3j3sh0wf0zq3rqyj8qkh"; depends=[ape assertthat cli ggplot2 lpSolveAPI magrittr Matrix proto Rcpp RcppArmadillo RcppProgress tibble tidytree uuid viridisLite]; }; ops = derive2 { name="ops"; version="1.0"; sha256="0cvwyn5sz5lx8sin8w4k8ymslfl4nfaa012a9vcl2hvp4850rk25"; depends=[]; }; optAUC = derive2 { name="optAUC"; version="1.0"; sha256="0j1llzqa3n7kqw3i5bb7284z0hi6s5jbjfl9zap0l7xf6hg4x1dn"; depends=[MASS]; }; optBiomarker = derive2 { name="optBiomarker"; version="1.0-27"; sha256="1kkj602d4klwyd8kylawgfysg8dlp2g6j7afkppzv5x8mbhs5ji4"; depends=[e1071 ipred MASS Matrix msm randomForest rgl rpanel]; }; @@ -11253,7 +11677,7 @@ in with self; { optigrab = derive2 { name="optigrab"; version="0.9.2.1"; sha256="1c3q4kx8rkgpjsy0hy2w2dd9kv51avnw1ab82hzmjgngfnvaig0n"; depends=[magrittr stringi]; }; optim_functions = derive2 { name="optim.functions"; version="0.1"; sha256="1la3v8yd9cdichp3mka4x86hr9lynh6qfg7h9ab6cwijw6kzkn6g"; depends=[lhs randtoolbox stringr]; }; optimCheck = derive2 { name="optimCheck"; version="1.0"; sha256="1qjkv1mfyn7sw0dkxxcdaqj85vl71cgffpf3k3mvzy0s8yhxjb4n"; depends=[]; }; - optimParallel = derive2 { name="optimParallel"; version="1.0"; sha256="1m7rny7c1x1kaa4swqndhmb83ilihp3ksyfpys9mqlzchja96229"; depends=[]; }; + optimParallel = derive2 { name="optimParallel"; version="1.0-1"; sha256="0ck6a1lv5as98hzww7cjkzwrggq7bzmdhd0djkzvkwmx8h35chy6"; depends=[]; }; optimStrat = derive2 { name="optimStrat"; version="2.1"; sha256="0splvrnrs8ayiycyxs02vcs5m0s2r68sblmcdlbi49fmxgw48di9"; depends=[cubature mvtnorm shiny]; }; optimalThreshold = derive2 { name="optimalThreshold"; version="1.0"; sha256="1m39q36p7i7z31b90awriq5jf9rfybyw5lj3m1w33v2ssipkzp1n"; depends=[ars coda HDInterval mgcv rjags]; }; optimbase = derive2 { name="optimbase"; version="1.0-9"; sha256="0ivz24kf3yacgq5bl3s3az1pcyhsz0cza5f8vdksy5gchwqplm8n"; depends=[Matrix]; }; @@ -11279,8 +11703,7 @@ in with self; { orca = derive2 { name="orca"; version="1.1-1"; sha256="1wd5nh2vh6j1rp78hbw17qipi67f0wimrbkiarak8f7k5pfiy1zn"; depends=[]; }; orclus = derive2 { name="orclus"; version="0.2-6"; sha256="0d78mn2vl2yxlvdswyxkxp9zg59b8cvfksz9m56kddn79aps1ikl"; depends=[]; }; orcutt = derive2 { name="orcutt"; version="2.3"; sha256="0pj7pqzbcg4gp35nsz3avyawmx69dgj0l2w0x8ypw5qwl4zhmnyk"; depends=[lmtest]; }; - ordBTL = derive2 { name="ordBTL"; version="0.8"; sha256="09x3zfmss4fsh3rjghgmpv8y34dnkz4mw696b3k3nvlgk55a1423"; depends=[caret gtools VGAM wikibooks]; }; - ordDisp = derive2 { name="ordDisp"; version="1.0.1"; sha256="1vjki73h8933z36ikwmjn84ldz154mahp2jkd9cbj5n6xsi47fnw"; depends=[VGAM]; }; + ordDisp = derive2 { name="ordDisp"; version="2.1.1"; sha256="0906y98ydiadyqhz9ad2ssw1282a10c418k20vkbwzad2xip7grg"; depends=[VGAM]; }; ordPens = derive2 { name="ordPens"; version="0.3-1"; sha256="0yzf3qzi4p7xqimihjvr0wkdvj3sy9n3wc86bf4bjbavniq6m69r"; depends=[grplasso mgcv RLRsim]; }; ordcrm = derive2 { name="ordcrm"; version="1.0.0"; sha256="1hy24s23l099b21w5j3p2f0748s8xmhxhslfp65fg7ycwda5qsyw"; depends=[rms]; }; orddom = derive2 { name="orddom"; version="3.1"; sha256="165axs15fvwhrp89xd87l81q3h2qjll1vrwcsap645cwvb85nwsh"; depends=[psych]; }; @@ -11293,9 +11716,9 @@ in with self; { ordinal = derive2 { name="ordinal"; version="2019.12-10"; sha256="09bpmjmbf4x82kgf6bm4bkncq2apdv9mk20zj4zgma2jx2vyfhbs"; depends=[MASS Matrix numDeriv ucminf]; }; ordinalClust = derive2 { name="ordinalClust"; version="1.3.4"; sha256="0r1g23ddhsszl7a52pdw3wnwipk4pikkg7p256jxls777wcyla3f"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; ordinalCont = derive2 { name="ordinalCont"; version="2.0.1"; sha256="18li100drg54sfsp1qzxpfk7dqkdslrg6q4v7lqpysw9p7q0wpfp"; depends=[boot Deriv]; }; - ordinalForest = derive2 { name="ordinalForest"; version="2.3-1"; sha256="1yhaq6bg9npxsc9v6v9viqlwyrpdag1hy0z25h10cfygg8h1ranl"; depends=[combinat ggplot2 nnet Rcpp]; }; + ordinalForest = derive2 { name="ordinalForest"; version="2.4-1"; sha256="00w8jiz0260z4min2xxbg9dx2jiw99wyhgcxa11zhzzh91qvlf78"; depends=[combinat nnet Rcpp verification]; }; ordinalLBM = derive2 { name="ordinalLBM"; version="1.0"; sha256="1sfzkm3f9s5nbalakgk5v919wr7hdlr5p280rw2p8dy4wxr3xk3s"; depends=[RColorBrewer reshape2]; }; - ordinalNet = derive2 { name="ordinalNet"; version="2.7"; sha256="13d7mvjfqdikd9lvdpsn3xr7yhkcqlv9ljy21qai9qna1cfd4x2q"; depends=[]; }; + ordinalNet = derive2 { name="ordinalNet"; version="2.9"; sha256="0jnyhm6appggywva2jx39xhk4967qkzc2q71fikm9c78p9znw2an"; depends=[]; }; ordinalRR = derive2 { name="ordinalRR"; version="1.1"; sha256="1sfkq8gryyls22208ympw5scgb4jkd27pyc1qklw4x7cz9wfnfbp"; depends=[rjags]; }; ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.6"; sha256="0axpndyyns649mwifq8f16l8n8x9nic8cv8l71ljyr2gwlm0nqz0"; depends=[survival]; }; ordinalpattern = derive2 { name="ordinalpattern"; version="0.2.0"; sha256="0nf7323wd8wm4qxlhr6cvm1l87rwfdr5c4qivhncy0m2n5vknc1c"; depends=[gtools mvtnorm]; }; @@ -11305,14 +11728,14 @@ in with self; { org = derive2 { name="org"; version="2019.4.2"; sha256="0jrnr22slgzwsdb4a1jb1l878smhvfb680cgmgb3a88jqj4jfscl"; depends=[]; }; orgR = derive2 { name="orgR"; version="0.9.0"; sha256="1q4qbwnbhmja8rqiph7g7m4wxhzhk9mh91x1jgbnky8bs4ljdgrx"; depends=[data_table ggplot2 ggthemes lubridate stringr]; }; orgutils = derive2 { name="orgutils"; version="0.4-1"; sha256="1yc3avhq3786his7nd60zfbzd9inkfrfz938r8378z59zbb1mzqq"; depends=[textutils]; }; - orientlib = derive2 { name="orientlib"; version="0.10.3"; sha256="1qi46hkz73b8722zc3w6wvsq1ydlk37yxn9rd1dqygqbs1svkmvv"; depends=[]; }; + orientlib = derive2 { name="orientlib"; version="0.10.4"; sha256="0lds3y05byag466asi8hmv1yfllsdx7z5i8hq21r6dx3w4n4f46x"; depends=[]; }; origami = derive2 { name="origami"; version="1.0.3"; sha256="034h9dnllzllqd0pzx2if69x17gaxfjrfi4ini6gh23asr3krls3"; depends=[abind assertthat data_table future future_apply listenv]; }; - originr = derive2 { name="originr"; version="0.3.0"; sha256="1r4w8gilr25gdqm3slviwas3s7qkpiyv4ifzp7qkby6vrdswnngb"; depends=[crul data_table jsonlite taxize xml2]; }; + originr = derive2 { name="originr"; version="0.4.0"; sha256="0r5aqy5vc3d5r3ln07qs6jbyiglcn4wymljmmrlxflpjw8arw9sn"; depends=[crul data_table jsonlite taxize xml2]; }; orloca = derive2 { name="orloca"; version="4.9"; sha256="02fqak8s68q522kgvrqqz9rfhpzby0ln032cisjwgk7nlcx4wbjk"; depends=[knitr png rmarkdown ucminf]; }; orloca_es = derive2 { name="orloca.es"; version="4.9"; sha256="00zb08dqcsh1ljl4f2djm1pwbrfbaddgapn3v8nascmwxlhb2hkw"; depends=[orloca]; }; ormPlot = derive2 { name="ormPlot"; version="0.3.2"; sha256="0sdn7vrc35pl763snfrrcn0fa6i3agr57sjayjz93friijddkcp6"; depends=[ggplot2 gtable rms]; }; oro_dicom = derive2 { name="oro.dicom"; version="0.5.3"; sha256="1ar70xk2bqk7jgckfivgp4np3dxaynmgdg41n8x0sg9cpxl2lc38"; depends=[oro_nifti]; }; - oro_nifti = derive2 { name="oro.nifti"; version="0.10.1"; sha256="02hyc2b9azdlsbl6zb4xd4hc523hi091jimxlv1sp0044ynqzczv"; depends=[abind bitops RNifti]; }; + oro_nifti = derive2 { name="oro.nifti"; version="0.10.3"; sha256="1w8b7pib0mziz5wpfr9a30aki37b1v5alqmlkxd3fmbhiaygv9cx"; depends=[abind bitops RNifti rticles]; }; oro_pet = derive2 { name="oro.pet"; version="0.2.6"; sha256="1dczii7knh9241ksswxk9zg1d69mhk2ilrk4kjv7cj9nfm8fgmja"; depends=[minpack_lm msm oro_dicom oro_nifti]; }; orsifronts = derive2 { name="orsifronts"; version="0.1.1"; sha256="1js4q2s1mn263x8szl5q47ajfxv9lsjd5zyphwyhbkqrnd8ijd3w"; depends=[sp]; }; orsk = derive2 { name="orsk"; version="1.0-5"; sha256="19bpvsdjwjm62a2kfh3xjpqnn39kls656kh832frkqa08bdd7zjk"; depends=[BB BHH2]; }; @@ -11326,36 +11749,42 @@ in with self; { oshka = derive2 { name="oshka"; version="0.1.2"; sha256="02hglpq5lknq93zbcf219lhnhppzgygkhxqixb15f89rxf9fczgs"; depends=[]; }; osmar = derive2 { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[geosphere RCurl XML]; }; osmdata = derive2 { name="osmdata"; version="0.1.3"; sha256="1a57fg8j7ski050l17hv137mlb5ir7qx7212y9d49arbwlh9bpcq"; depends=[curl httr jsonlite lubridate magrittr Rcpp rvest sp tibble xml2]; }; - osmose = derive2 { name="osmose"; version="3.3.3"; sha256="0b6998m3id0llpvlj5xgdrrrx1j90kxax9nfn2a5f0xq7hpcd9cg"; depends=[fields knitr mgcv ncdf4 rappdirs rlist rmarkdown stringr]; }; + osmose = derive2 { name="osmose"; version="3.3.4"; sha256="144mklbish59amzz7j95qmn98yqlz3bqzd2rp03wg9f5s69bxjj6"; depends=[fields knitr mgcv ncdf4 rlist rmarkdown stringr]; }; osmplotr = derive2 { name="osmplotr"; version="0.3.2"; sha256="0k5rjxsi1sfcxcl6lf8zcncqnshz2jaz7hcwn2ifg4yhvxvkfma8"; depends=[curl e1071 ggm ggplot2 httr mapproj osmdata rgeos sp spatstat]; }; osqp = derive2 { name="osqp"; version="0.6.0.3"; sha256="1266n04c8zsv4ixf7y25jkccv9lx3rvmd7bnkxynbwga9psd3l0j"; depends=[Matrix R6 Rcpp]; }; osrm = derive2 { name="osrm"; version="3.3.3"; sha256="1kiy3ij2fkvaxsgbhwn1lvhqav6prsqfi5ipzkihi2piw2gfns2r"; depends=[gepaf isoband jsonlite RCurl sf sp]; }; osrmr = derive2 { name="osrmr"; version="0.1.35"; sha256="1pmsybyqkgpqz0yhfmwrsa2smgmclxzk9mlzcqmm8ph6dcd1x0s8"; depends=[assertthat bitops R_utils rjson stringr]; }; + ot = derive2 { name="ot"; version="0.2.0"; sha256="0lym92hsxhfjdkh738rxlpkq084454055vgxm2b4wdhqw00jwf5y"; depends=[]; }; otinference = derive2 { name="otinference"; version="0.1.0"; sha256="1l75jjnkyk8yzaw9zyk45jq9ys304i6pzm2xd5apxrb1jk75a3li"; depends=[MASS Rglpk sm transport]; }; - otpr = derive2 { name="otpr"; version="0.3.0"; sha256="02p0wiz791023zpwy8dq8blsax2yfji3cpp4b77n7ri1fsisfy39"; depends=[checkmate geojsonsf httr janitor jsonlite]; }; + otp = derive2 { name="otp"; version="0.1.0"; sha256="0l0r56kn8jmjxhzz646fimi91blpgpynrrgfd03rh3dbifd5xhdz"; depends=[base64url openssl R6]; }; + otpr = derive2 { name="otpr"; version="0.4.1"; sha256="1b91c83f3061vd2j6ld7pkqdwzdk8hbmrc3lp8f9xjxyfj0krc9n"; depends=[checkmate geojsonsf httr janitor jsonlite sf]; }; otrimle = derive2 { name="otrimle"; version="1.3"; sha256="1vq2sm3g32cr8x0nzxq9g3zk0qhcd2syzrcvrfx5ncf3i3f9gq5n"; depends=[doParallel foreach mclust]; }; otsad = derive2 { name="otsad"; version="0.2.0"; sha256="1jb6raxm70aywbgs7bdyw8vccy1nj924f4hkpjrlgnvzmy0hyhvs"; depends=[ggplot2 plotly reticulate sigmoid]; }; otuSummary = derive2 { name="otuSummary"; version="0.1.1"; sha256="04l667qmp7wqkbdsk87j92gf89s13090kzs8cjlmxsp6i69r34z2"; depends=[reshape2 vegan]; }; otvPlots = derive2 { name="otvPlots"; version="0.2.1"; sha256="0fjx0kl9y77mazwy7lg4mxc9sg8ysvvbl4h3k6bvfpnjm5x62hff"; depends=[data_table ggplot2 gridExtra Hmisc moments quantreg scales stringi]; }; ouch = derive2 { name="ouch"; version="2.14-1"; sha256="0ddf9bw5lhj8vb0ja78jf99i0smq4rgmm842k4a4ygap41vdyn2b"; depends=[subplex]; }; outForest = derive2 { name="outForest"; version="0.1.0"; sha256="0wkji836xrf7izx3ibrf1ylcm4ph766ih3qd7wqjsjfx2cz5bpjr"; depends=[FNN missRanger ranger]; }; - outbreaker = derive2 { name="outbreaker"; version="1.1-8"; sha256="0przz78jzkwl580w83p0aigaykfki2hdzprwqic7dy6yxnpqlpm3"; depends=[adegenet ape igraph]; }; outbreaker2 = derive2 { name="outbreaker2"; version="1.1.1"; sha256="01i8abwg3g352nbrpaf8iahsjc4cbpph993x867yyvgj12nvsgs3"; depends=[ape ggplot2 magrittr Rcpp visNetwork]; }; outbreaks = derive2 { name="outbreaks"; version="1.5.0"; sha256="00369lnh65nfkcbjd5i39irdv2hcwy5cinb2dvv2x4c2q2ax9f0d"; depends=[]; }; outcomerate = derive2 { name="outcomerate"; version="1.0.1"; sha256="07mwml7r98qjgvrp938sqf7klyspz110583j0zwb72j69n4whmrj"; depends=[Rdpack]; }; outliers = derive2 { name="outliers"; version="0.14"; sha256="0vcqfqmmv4yblyp3s6bd25r49pxb7hjzipiic5a82924nqfqzkmn"; depends=[]; }; - outliertree = derive2 { name="outliertree"; version="1.2.0"; sha256="1az71acng963j58cina4ng40762g0japrms99ff7ly1pw4252vrq"; depends=[Rcereal Rcpp]; }; + outliertree = derive2 { name="outliertree"; version="1.3.0"; sha256="03wj3fv3ar8yhgh79jlm83psiqbjgc491fslgmh8a23ic3s2q51i"; depends=[Rcereal Rcpp]; }; outreg = derive2 { name="outreg"; version="0.2.2"; sha256="04f1x7mxq4swbd7bfwjjgx4838jm6qj4piaighmhcscwrdkxa1cp"; depends=[magrittr reshape2 sandwich stringr tidyr]; }; - ouxy = derive2 { name="ouxy"; version="1.1"; sha256="0f07m8zs4vnr0vpsdw1qdzdrq80qyq4477l06w9i3bb0n64yxcaa"; depends=[abc adephylo ape coda EasyABC geiger maps MCMCpack nlme phytools Sim_DiffProc TreeSim]; }; + outsider_base = derive2 { name="outsider.base"; version="0.1.3"; sha256="1ai7rm3y2zamg03l7mrhbpa93l5y33g70k5vqyqbhmgx3h3ayj6c"; depends=[callr cli crayon devtools jsonlite praise sys tibble withr yaml]; }; + ouxy = derive2 { name="ouxy"; version="2.1"; sha256="0mdjxg7wm68882hbwl0gg15dld6f90xyf0s6hk2z90r34bvyky0i"; depends=[abc adephylo ape coda EasyABC geiger maps MCMCpack nlme phytools Sim_DiffProc TreeSim]; }; overdisp = derive2 { name="overdisp"; version="0.1.0"; sha256="0j1rr9grzhlma9hgljxhn70ia268pc6f3gbinrlqky3pg73xjg2k"; depends=[]; }; - overlap = derive2 { name="overlap"; version="0.3.2"; sha256="1j3m6ir1chdz0si2fhcw6gs7c9h09bv0chz18rpzxsywww6d4rzy"; depends=[]; }; + overlap = derive2 { name="overlap"; version="0.3.3"; sha256="17cnr4qin1qy0df4k491267acna12gpbbps6w3gi8nccqxfrb1pd"; depends=[]; }; overlapping = derive2 { name="overlapping"; version="1.6"; sha256="0qy5jw4nn4l6rb36sxd9waz7x4g18q42dsk12hvsnan5jyzcdwfn"; depends=[ggplot2 testthat]; }; overlapptest = derive2 { name="overlapptest"; version="1.1"; sha256="0r732za6lm7dk5r237nhadgbpinaz5dmb6f7pn3mbg0plkdy3mff"; depends=[spatstat]; }; overture = derive2 { name="overture"; version="0.4-0"; sha256="1s16x5kn0apb0w1f7hqzcsqvw3x621y5n6yr1qn7yb7431pdw3cz"; depends=[bigmemory]; }; + overviewR = derive2 { name="overviewR"; version="0.0.4"; sha256="0ccs0zc7bhz1i29f6fv5i32zxl5yrmazyknf7h4i9r0l1xkiixxy"; depends=[dplyr]; }; + owd = derive2 { name="owd"; version="1.0.6"; sha256="08f1zzlnkfdzm5rlw14qm6yvn68j2yas21zjsy31pc59rh3lzkyh"; depends=[]; }; owdbr = derive2 { name="owdbr"; version="1.0.1.1"; sha256="0q4654zr5aw04sssy7127vafry72b7p3d8i44fqvqg3055awin0i"; depends=[data_table dplyr httr jsonlite magrittr tibble]; }; owmr = derive2 { name="owmr"; version="0.8.2"; sha256="0qlb5aw6n06yf8y2gd2fjp8kp3w0xgqh3fka7rxqndgvaqmin1a6"; depends=[httr jsonlite magrittr plyr tibble tidyr]; }; - ows4R = derive2 { name="ows4R"; version="0.1-4"; sha256="1chvb7i9a6kalnjacfvwrnp5j0fhr6da6v6llazqarij9njxfing"; depends=[geometa httr openssl R6 rgdal sf XML]; }; + ows4R = derive2 { name="ows4R"; version="0.1-5"; sha256="0zl6nvcrzjcaz43ji2a6ym3mvfzfvf8lyb29hg8sidribr6js3nk"; depends=[geometa httr openssl R6 rgdal sf XML]; }; oxcAAR = derive2 { name="oxcAAR"; version="1.0.0"; sha256="19inf2bcpfj4jzfym1v5f1w5fkmcycz5jrfc2hf0wsvixy53lfxa"; depends=[jsonlite stringr]; }; + oxcovid19 = derive2 { name="oxcovid19"; version="0.1.1"; sha256="13l500giwpzkfv4dss7glzmpkk8iv8dzn0znjmrkplvfq7bv8bqz"; depends=[DBI dbplyr dplyr RPostgres sf]; }; + oysteR = derive2 { name="oysteR"; version="0.0.3"; sha256="1a701jpylk1f55dwrgribf598z1nlk7c0axhx683wjzq50mvgyfm"; depends=[cli dplyr glue httr purrr rjson tibble tidyr]; }; oz = derive2 { name="oz"; version="1.0-21"; sha256="0p4r8qbpv7q6vad940540pd3lk79pyfj41h2cn22hsy1j0va1qbv"; depends=[]; }; ozmaps = derive2 { name="ozmaps"; version="0.3.6"; sha256="17lh5lgblyryvgk2cman1xwqz5hc0v4s58f3xz36z5qjrcs1599r"; depends=[oz sf tibble]; }; p2distance = derive2 { name="p2distance"; version="1.0.1"; sha256="1ims8i5z5k97kjpdysgx8g7lgvnvf7amahcrssw7bk38bvbxawni"; depends=[]; }; @@ -11381,10 +11810,8 @@ in with self; { packMBPLSDA = derive2 { name="packMBPLSDA"; version="0.8.0"; sha256="0jn47zhcfssa2rwjh8jc2zc93g766pslxx8vjm0bsnzyzjl2yqb9"; depends=[ade4 DiscriMiner doParallel FactoMineR foreach MASS pROC]; }; packS4 = derive2 { name="packS4"; version="0.9.3"; sha256="0kkh4lfdbr2ydyfpymwrdkms1d4mj8430p6vxvj5wrgl4vh85gwd"; depends=[codetools]; }; packageDiff = derive2 { name="packageDiff"; version="0.1"; sha256="0qxgx2ac0x7p9j9clj7hgjahf7xwzcjkcw0d2n6w0r9c4g0mw9w2"; depends=[diffr htmlwidgets]; }; - packageRank = derive2 { name="packageRank"; version="0.3.0"; sha256="1617xah0c8rnyjq09k69yrmalfryx921fflpx7k7bk52zwrrblc9"; depends=[cranlogs data_table ggplot2 memoise RCurl rversions]; }; - packagedocs = derive2 { name="packagedocs"; version="0.4.0"; sha256="0zw9ana7s42ardphhdaklba02yjj1v8gliq4l98397mjmzc6f4xd"; depends=[crayon devtools digest evaluate highlight htmltools lazyrmd magrittr rmarkdown stringr whisker yaml]; }; + packageRank = derive2 { name="packageRank"; version="0.3.5"; sha256="03yixgi5xj288fpjdgkywlpxl8d6llry0ppgavxrmm3w3nazwx5h"; depends=[cranlogs data_table ggplot2 memoise pkgsearch R_utils RCurl rversions]; }; packagefinder = derive2 { name="packagefinder"; version="0.2.1"; sha256="01nfh9han9k6gg59c6qhahfkwl9bi45ncs7mhrp0fkmxw6z21fyh"; depends=[crayon formattable htmlTable httr jsonlite lubridate pander stringr textutils tidyr]; }; - packager = derive2 { name="packager"; version="1.2.0"; sha256="1jgcas51wmn00s4j9qxr8igs8mhdhv62f4pd5ajlx7qhc8h78qw8"; depends=[callr checkmate codetools crayon cyclocomp desc devtools fakemake git2r httr pkgbuild pkgload rcmdcheck remotes rprojroot usethis whisker whoami withr]; }; packagetrackr = derive2 { name="packagetrackr"; version="0.1.1"; sha256="0xjq27j7bd7lps0vp9gdinxn19wl10k2cp9wb2xjih7p6l0wd57g"; depends=[dplyr httr magrittr rappdirs]; }; packcircles = derive2 { name="packcircles"; version="0.3.3"; sha256="0gik0splf48zfl40297nh7lbgvd2qqlci99wv841mfy7858ai933"; depends=[Rcpp]; }; packrat = derive2 { name="packrat"; version="0.5.0"; sha256="1xy5dd2hrpqa07jfl4s7dsrya05mf36ms74j833scdz0zf89586n"; depends=[]; }; @@ -11392,66 +11819,65 @@ in with self; { paco = derive2 { name="paco"; version="0.4.1"; sha256="0vlvvmkx2yhm28vly68gapzi2rjf7zilnl96hvysip9n8hq4w71d"; depends=[ape plyr vegan]; }; pacotest = derive2 { name="pacotest"; version="0.3.1"; sha256="0mpdgd8pr7clh5ickz245kqlhh197cnmm8kzxp84fddjb3i1m011"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; }; pact = derive2 { name="pact"; version="0.5.0"; sha256="043hbydj5f6889xrfsrn8jrgid2nnbsz6d7jpn4hywwa97snw4ny"; depends=[glmnet survival]; }; - padr = derive2 { name="padr"; version="0.5.1"; sha256="19cl8h27ddwm40hw3kbkzcg32xnry40xns6ikmknl4zpws65m8wl"; depends=[dplyr lubridate Rcpp rlang]; }; + padr = derive2 { name="padr"; version="0.5.2"; sha256="0cnsycwd9zpz4apk7rizgyjrg072kqyk4p4q5grdlfzv73ivr7ab"; depends=[dplyr lubridate Rcpp rlang]; }; paf = derive2 { name="paf"; version="1.0"; sha256="0wrqn67jfrjjxwcrkka6dljgi3mdk00vfjkzzcv2v7c97gx1zvwn"; depends=[survival]; }; pafdR = derive2 { name="pafdR"; version="1.0"; sha256="1yimsd4h23hcf752p5flda3dqk8hgn6qm9k0pmbapxj4jbsw14w5"; depends=[curl exams stringr]; }; - pagedown = derive2 { name="pagedown"; version="0.9"; sha256="018hd456y58qn887v58hrzwij18s03rvizkj1gdays0z5pbzpspp"; depends=[bookdown htmltools httpuv jsonlite later processx rmarkdown servr websocket xfun]; }; + pagedown = derive2 { name="pagedown"; version="0.10"; sha256="15szz0lr5sj8fnxw9pc091m09szdrd4a89vriv07wyblkp6ndpgi"; depends=[bookdown htmltools httpuv jsonlite later processx rmarkdown servr websocket xfun]; }; pagenum = derive2 { name="pagenum"; version="1.1"; sha256="0908rlr9sd1a2qwz0idw8ccxhji73sk24gyrdl071lpnd1rs2wl7"; depends=[]; }; - pageviews = derive2 { name="pageviews"; version="0.3.0"; sha256="031y67nqqvf3fa2273m7z2cldda0ijh63qwkh4gis3hz9hfril0v"; depends=[curl httr jsonlite]; }; + pageviews = derive2 { name="pageviews"; version="0.5.0"; sha256="1fhlm2y288wx625y0glxybjb0xv9sqvvln35jqlwqq38h3grcpqd"; depends=[curl httr jsonlite]; }; painter = derive2 { name="painter"; version="0.1.0"; sha256="0qr6p13h50rlavcsamxmijfr4dfrbv1k088m28qf8a4gam3ap85b"; depends=[]; }; paintmap = derive2 { name="paintmap"; version="1.0"; sha256="1qw5725yjymxmfhffqjx4lbmzj437c7qwr8xrzmf52f0m28nl3vk"; depends=[]; }; pairedCI = derive2 { name="pairedCI"; version="0.5-4"; sha256="03wf526n3bbr2ai44zwrdhbfx99pxq1nbng9wsbndrdg2ji4dar2"; depends=[]; }; pairheatmap = derive2 { name="pairheatmap"; version="1.0.1"; sha256="1awmqr5n9gbqxadkblpxwcjl9hm73019bwwfwy1f006jpn050d6l"; depends=[]; }; pairsD3 = derive2 { name="pairsD3"; version="0.1.0"; sha256="0ql6pqijf24pfyid52hmf5fmh4w1ca3sm47z9vknqpnjbn47v8q2"; depends=[htmlwidgets shiny]; }; - pairwise = derive2 { name="pairwise"; version="0.4.4-7"; sha256="1cgan403p9p08q3cwxnfwgrjg1l23dpmy4fjzcfla6mw24qn60wh"; depends=[]; }; + pairwise = derive2 { name="pairwise"; version="0.4.5-1"; sha256="01gyr1jiz1v7g1a3gjxsydfr0ff53j5miw8cxj2rdv5yyyy4nvkm"; depends=[]; }; pairwiseCI = derive2 { name="pairwiseCI"; version="0.1-27"; sha256="0yp9nibdrsddjqq6vdlfbpvmfgm209h99b6qqqd6wgfzng327822"; depends=[boot coin MASS MCPAN mcprofile]; }; - pairwiseComparisons = derive2 { name="pairwiseComparisons"; version="0.3.0"; sha256="07l4i3wmi92b05ix2sy30nghwrqax5fp88f0y897bgyf7wm5fd1b"; depends=[broomExtra dplyr forcats ipmisc jmv purrr rlang tidyBF tidyr WRS2]; }; + pairwiseComparisons = derive2 { name="pairwiseComparisons"; version="1.1.2"; sha256="1p9i7kzsc0n98yii8sar5jl8jywy66555fghhxs9hh45gxrkbfgr"; depends=[broomExtra dplyr dunn_test forcats ipmisc PMCMRplus purrr rlang tidyBF tidyr WRS2]; }; pak = derive2 { name="pak"; version="0.1.2"; sha256="05s8rg84w4xhpbaa98p3lgvsnbjrxfbcz5izgkamqa1dw4gdxml4"; depends=[assertthat base64enc callr cli cliapp crayon curl desc filelock glue jsonlite lpSolve pkgbuild pkgcache prettyunits processx ps R6 rematch2 rprojroot tibble]; }; palaeoSig = derive2 { name="palaeoSig"; version="2.0-3"; sha256="1sn2nbiq037l81qvrqbg7gf1312g8vy574hsfng07qk1jpx7vwkk"; depends=[assertr dplyr forcats ggplot2 ggrepel magrittr MASS mgcv purrr rioja rlang TeachingDemos tibble tidyr vegan]; }; palasso = derive2 { name="palasso"; version="0.0.7"; sha256="1r7kcx0i1xqvqpqwvh5khsv3g0hj3j8f56q9jbya18scywk2ivzg"; depends=[glmnet Matrix survival]; }; paleoMAS = derive2 { name="paleoMAS"; version="2.0-1"; sha256="1hhb5wbj4m3ch8wnvd1zkl5bk6wa9nl6jl1dhm4z6yqkh29yn9z6"; depends=[lattice MASS vegan]; }; paleoTS = derive2 { name="paleoTS"; version="0.5.2"; sha256="1hd143xw16n8xhicfr6nfyfm6kyr56gyiq5vqnfzhmndjrvkpkx7"; depends=[doParallel foreach iterators mnormt]; }; - paleobioDB = derive2 { name="paleobioDB"; version="0.6.0"; sha256="00bx59gv59hsdlg5x7n6n68av0m4brw2d02caifzgy79cfln5rha"; depends=[gtools maps plyr raster RCurl rjson scales]; }; + paleobioDB = derive2 { name="paleobioDB"; version="0.7.0"; sha256="0hgf0ns4mp2war254ysb9rcm4kij1d3xrwkr4s4n2h5in8dz23iq"; depends=[gtools maps plyr raster RCurl rjson scales]; }; paleofire = derive2 { name="paleofire"; version="1.2.4"; sha256="1vgai4my6kl0fldghp6a1qr8xhxiyw137kd80d0zir6q47nlnc2x"; depends=[GCD ggplot2 lattice locfit plyr raster rgdal]; }; paleomorph = derive2 { name="paleomorph"; version="0.1.4"; sha256="05l55miahkmj8ikq8qz20y6kgxvxmdf04kji898i7fp8qyj4vfpa"; depends=[]; }; paleotree = derive2 { name="paleotree"; version="3.3.25"; sha256="04l7mh198sm1j8b75ydm7sq55l3nnwns29wj8cli4n3m009bjr5a"; depends=[ape jsonlite phangorn phytools png RCurl]; }; - paletteer = derive2 { name="paletteer"; version="1.1.0"; sha256="0w81ssvykqaamsdwc27m57x2cl4qmby1ny18aj0fihsh2rk5cg02"; depends=[gameofthrones ggthemes harrypotter jcolors oompaBase palr pals prismatic rematch2 rlang rstudioapi scico viridisLite]; }; + paletteer = derive2 { name="paletteer"; version="1.2.0"; sha256="1bpqdin6amq7dg36hjk4yhm6spc98m1m0l3jx7m3gfhy29vx65cl"; depends=[prismatic rematch2 rlang rstudioapi]; }; palettesForR = derive2 { name="palettesForR"; version="0.1.2"; sha256="0nkb0dszj3a9ba7w6kfyn8lxacqsjw60i87p3g2gyl098kjwv7qv"; depends=[]; }; palettetown = derive2 { name="palettetown"; version="0.1.1"; sha256="1kjj1sqib1ns7895plp8c7h317pxwbyxi2shjkcgadkcsv2yjsxn"; depends=[]; }; palinsol = derive2 { name="palinsol"; version="0.93"; sha256="0k29sl2j7yf4yc0dhb047rxwg9np9l6pdwv6wyb4j80yc07vc9am"; depends=[gsl]; }; palm = derive2 { name="palm"; version="1.1.3"; sha256="1w13a1517h9dqfkc0863fsb08mapx8cafypk3b61djh69hcpbl0v"; depends=[gsl minqa mvtnorm R6 Rcpp spatstat]; }; - palmtree = derive2 { name="palmtree"; version="0.9-0"; sha256="0cd5p82gp2g1zq8kf9ybi4wa1r2jg4dbxbp5n01qs4apmyyncl4d"; depends=[Formula partykit]; }; + palmerpenguins = derive2 { name="palmerpenguins"; version="0.1.0"; sha256="0q1k3cdkliq7kwrg1n0vs9b6cjwyfarhlgdijhp9c6riy6y5ik7x"; depends=[]; }; + palmtree = derive2 { name="palmtree"; version="0.9-1"; sha256="06438wla5zm2s8vgip15lfy5gmhwh3wkiak8hsylc8zzkvn698cn"; depends=[Formula partykit]; }; palr = derive2 { name="palr"; version="0.2.0"; sha256="0c9fg3kbl2n6m01ck2pmavgxbk953vdxqsc3cw6phnnav93kr5cf"; depends=[]; }; pals = derive2 { name="pals"; version="1.6"; sha256="18bl15figc9mhlvxz71da6s2mzyja6rdb2cpm6h5vya1lpv3snmk"; depends=[colorspace dichromat mapproj maps]; }; pamctdp = derive2 { name="pamctdp"; version="0.3.2"; sha256="0qs8lj5g2fx5rfd0afv76x9x7wqm333qmjv6zzip6pf11dzkghyj"; depends=[ade4 FactoClass xtable]; }; pamm = derive2 { name="pamm"; version="1.121"; sha256="191f0g90s1m3w68mszmdsdv5yw7xd1vsdbwsfvmyydgxn4261pwk"; depends=[lattice lme4 lmerTest mvtnorm]; }; - pammtools = derive2 { name="pammtools"; version="0.2.2"; sha256="03znv9ajy1y5lks42d8vhd7a20n9hv8xnrl6mxw7cjhh94h1x1gl"; depends=[checkmate dplyr Formula ggplot2 lazyeval magrittr mgcv mvtnorm pec purrr rlang survival tibble tidyr]; }; + pammtools = derive2 { name="pammtools"; version="0.2.4"; sha256="1i1pa2p0n3n2lp5bp75i5z9cs05gh2p83hshcp21j76ji6mrdfc5"; depends=[checkmate dplyr Formula ggplot2 lazyeval magrittr mgcv mvtnorm pec purrr rlang survival tibble tidyr vctrs]; }; pampe = derive2 { name="pampe"; version="1.1.2"; sha256="092n04nrp886kd163v32f5vhp9r7gnayxzqb6pj57ilm5w1yrcsk"; depends=[leaps]; }; pamr = derive2 { name="pamr"; version="1.56.1"; sha256="0ycpgkk23y3zzkb42n2skcyl35ps1n7jmyzfj7pbxr3f6gr2grfh"; depends=[cluster survival]; }; pan = derive2 { name="pan"; version="1.6"; sha256="1dk3jjj826p7xrz10qz04vyc068xnypg7bp0pj4c32z3da0xzh5d"; depends=[]; }; - pancor = derive2 { name="pancor"; version="0.1.0"; sha256="16yiyqjzrqxqms3xyzg1c6b81y94vr8m72ilga7cpvkjvdpm3fbk"; depends=[ggplot2 rlang]; }; pander = derive2 { name="pander"; version="0.6.3"; sha256="1bd9sdghlsppmff18k5fg3i0visq9f4wc82rlhwq5m82bmgdgnyi"; depends=[digest Rcpp]; }; pandocfilters = derive2 { name="pandocfilters"; version="0.1-4"; sha256="1nlnvnvq3zwzpf6hnf8akl0w25kr7hrbr98rw5vgncxw35314xdp"; depends=[jsonlite]; }; panelAR = derive2 { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; }; panelView = derive2 { name="panelView"; version="1.1.2"; sha256="0kbh2g8yynv2mvvndy89lkm5yhy2hr04z52i2ccv9yfrkyignlfp"; depends=[ggplot2 gridExtra]; }; panelWranglR = derive2 { name="panelWranglR"; version="1.2.13"; sha256="0zj0m08518zi6xsa7qik61ys1qqa2lqiar4l7acclkw58w5zrmbc"; depends=[caret data_table Hmisc]; }; panelaggregation = derive2 { name="panelaggregation"; version="0.1.1"; sha256="0x8ldqb9216pclfvs4ymdpian43v2ydkyflpf0k6lcn35r04xfr6"; depends=[data_table]; }; - panelr = derive2 { name="panelr"; version="0.7.2"; sha256="1xbhrz4lpxxyraiyyh1dqh3fpck3gx5yd8laibzqb7mxb0ili2n7"; depends=[crayon dplyr Formula ggplot2 jtools lme4 lmerTest magrittr purrr rlang stringr tibble]; }; + panelr = derive2 { name="panelr"; version="0.7.3"; sha256="00ark2hcwvjijm6hyy78lz9992v4i0a8jr0zj336qz8g1nbpsk17"; depends=[crayon dplyr Formula ggplot2 jtools lme4 lmerTest magrittr purrr rlang stringr tibble]; }; panelvar = derive2 { name="panelvar"; version="0.5.2"; sha256="1rr7d0cyz6afxhwqslvcnbfb03cizpfldzwsfnkzxqmxpqasbw80"; depends=[ggplot2 knitr MASS Matrix matrixcalc progress reshape2 texreg]; }; pangaear = derive2 { name="pangaear"; version="1.0.0"; sha256="0i7k1sdhslw33dzpnrmajynq52svg8ri4mxz6aww2cah9y8vxlzl"; depends=[crul hoardr jsonlite oai png tibble xml2]; }; papayar = derive2 { name="papayar"; version="1.0"; sha256="11vkjhazfwfixsr6dba5jrcsr3r3mqgvj5s070b4gp70d6k1z8s5"; depends=[htmltools neurobase oro_nifti servr]; }; papeR = derive2 { name="papeR"; version="1.0-4"; sha256="1sc336haqsx6825g7m0z3a4pjklrmnzkq4995dpqwhvdvcikk9jd"; depends=[car gmodels xtable]; }; paperplanes = derive2 { name="paperplanes"; version="0.0.1.9"; sha256="1d9grc95xqxn91lvk8v7w3z90bhl8savkhihwshyjp8ij2xpzfkl"; depends=[]; }; - parSim = derive2 { name="parSim"; version="0.1.1"; sha256="1iqxv1qspx6b32qdczdzhc4sdjy5a2pb8mvg8jnc18jydi7ljs64"; depends=[dplyr pbapply]; }; + parSim = derive2 { name="parSim"; version="0.1.4"; sha256="0iswcw52skx1hxb9bv9ihhwwyybprsk2615pmijsxp0bkzgsjc88"; depends=[dplyr pbapply snow]; }; parade = derive2 { name="parade"; version="0.1"; sha256="07x02j9jlldz4p0cyhw292041l3pziv56bhbzp4f0qpxhcbn5zn4"; depends=[]; }; - paradox = derive2 { name="paradox"; version="0.2.0"; sha256="0n26mpmbab8wpzwizgxwwms4qsm9p8vpifhvyqx0211zk10472hz"; depends=[backports checkmate data_table mlr3misc R6]; }; + paradox = derive2 { name="paradox"; version="0.4.0"; sha256="1k6xd97781ybldrm0zpnrdg8dal98k5w9psv4vn1s53sla83k1lz"; depends=[backports checkmate data_table mlr3misc R6]; }; parallelDist = derive2 { name="parallelDist"; version="0.2.4"; sha256="0gqf9vi9hlbflxj941jv7hli8jiy2sqg8b312h401f8rkfqa9ckv"; depends=[Rcpp RcppArmadillo RcppParallel]; }; parallelML = derive2 { name="parallelML"; version="1.2"; sha256="05j0rb81i8342m8drwgmgi1w30q96yf501d83cdq4zhjbchphbl1"; depends=[doParallel foreach]; }; parallelMap = derive2 { name="parallelMap"; version="1.5.0"; sha256="0kjyskwvkqvsyjq55rhypif6z92r33llb7krrhc9f9w68xzp5yja"; depends=[BBmisc checkmate]; }; parallelSVM = derive2 { name="parallelSVM"; version="0.1-9"; sha256="0nhxkllpjc3775gpivj8c5a9ssl42zgvswwaw1sdhwg3cxcib99h"; depends=[doParallel e1071 foreach]; }; - parallelize_dynamic = derive2 { name="parallelize.dynamic"; version="0.9-1"; sha256="03zypcvk1iwkgy6dmd5bxg3h2bqvjikxrbzw676804zi6y49mhln"; depends=[]; }; paramGUI = derive2 { name="paramGUI"; version="2.1.4"; sha256="0k2wkl99ji3w7xmd9k7zzvrr3dbf3237q7lxm527dnrq331pmxmi"; depends=[colorspace fields shiny shinydashboard TIMP]; }; - parameters = derive2 { name="parameters"; version="0.6.1"; sha256="0mylxkf1y6mk4kf6c57x102sf4c800pfasjcfbf1hnsh6ya0m6dy"; depends=[bayestestR insight]; }; + parameters = derive2 { name="parameters"; version="0.8.2"; sha256="0kamszscywvdh4gikl5mmma7s5p7spmhirq3wrgf7x7f4gppbbmh"; depends=[bayestestR insight]; }; paramhetero = derive2 { name="paramhetero"; version="0.2.0"; sha256="16gvs8328bnqvhx47f0xwnmbmlakxmp4ivnjxk2b13z6qjs70ij4"; depends=[ggplot2 ggpubr lme4 survey]; }; paramlink = derive2 { name="paramlink"; version="1.1-2"; sha256="0y6wsrxwyavipmrjjznr2n920w0p6qlwapxc9mnkh9c6w3yznka2"; depends=[assertthat kinship2 maxLik]; }; params = derive2 { name="params"; version="0.6.1"; sha256="0w7k8k7z8p1y2w0dhpfssa868xaikfzfdjw2vlj1yl299k5yisax"; depends=[whisker]; }; @@ -11460,23 +11886,24 @@ in with self; { parboost = derive2 { name="parboost"; version="0.1.4"; sha256="087b4as0w8bckwqpisq9mllvm523vlxmld3irrms13la23z6rjvf"; depends=[caret doParallel glmnet iterators mboost party plyr]; }; parcats = derive2 { name="parcats"; version="0.0.1"; sha256="0bf1kqg3954z47cb4n4wv6pf55f1801qlsj1523ac0j3l3i39xn5"; depends=[dplyr easyalluvial forcats htmlwidgets magrittr purrr stringr tibble tidyr]; }; parcoords = derive2 { name="parcoords"; version="1.0.0"; sha256="15w0g789a2igagfrgv1978ib4ipxpfkid5jpj4q344mpdvgp6ip2"; depends=[crosstalk htmlwidgets]; }; - parcor = derive2 { name="parcor"; version="0.2-6"; sha256="10bhw50g8c4ln5gapa7wghhb050a3jmd1sw1d1k8yljibwcbbx36"; depends=[Epi GeneNet glmnet MASS ppls]; }; parfm = derive2 { name="parfm"; version="2.7.6"; sha256="1n548gaf62m56n8rlcz1mhpqxikd33vydjwl4wps441drp1dbvs0"; depends=[msm optimx sn survival]; }; + parglm = derive2 { name="parglm"; version="0.1.6"; sha256="1264ai64hm3sx3prmy6m24llml3za271w7vrcn7a0xcn1lwmp562"; depends=[Matrix Rcpp RcppArmadillo]; }; parlitools = derive2 { name="parlitools"; version="0.4.1"; sha256="05xii25acmbdbhrkwgw812352vhxqpp5m8qbl346bp6v74ixi8aj"; depends=[dplyr hansard mnis readr sf snakecase stringi]; }; parma = derive2 { name="parma"; version="1.5-3"; sha256="0yjpmxz20v6k107qylw42yf1b231hzym9dizjcq1kalivvscczc5"; depends=[corpcor nloptr quadprog Rglpk slam truncnorm]; }; - parmigene = derive2 { name="parmigene"; version="1.0.2"; sha256="1fsm6pkr17jcbzkj1hbn91jf890fviqk1lq6ls8pihsdgah1zb4d"; depends=[]; }; + parmigene = derive2 { name="parmigene"; version="1.1.0"; sha256="067rqxqyzy1fsjj0s1g7af4527whwdhzjzc5b8a8n7683na59ns4"; depends=[]; }; parmsurvfit = derive2 { name="parmsurvfit"; version="0.1.0"; sha256="0d3614q76dw3f7y9p8378hdny7bz5fymma5l0zpygr1cfnacdhh6"; depends=[fitdistrplus flexsurv ggplot2]; }; + paropt = derive2 { name="paropt"; version="0.1"; sha256="0934apc1paxsdahf7zywj4aaii7zmgfff7crpjvlmjg4x0pq390v"; depends=[Rcpp RcppArmadillo]; }; parsec = derive2 { name="parsec"; version="1.2.3"; sha256="142zxj34qsf0s537bcabf04yi2qfmy65bgczpkvbyv5vkajxl10v"; depends=[igraph netrankr]; }; parsedate = derive2 { name="parsedate"; version="1.2.0"; sha256="0gb3w6hmwxayhijpf36p5dk4h6bbdps57x3cgikwvvxkgi83rarr"; depends=[rematch2]; }; parsemsf = derive2 { name="parsemsf"; version="0.1.1"; sha256="0ks4503k06ib5lq4ar2rg0sdni99rjcqxj76b0mclasxbi07kjsa"; depends=[DBI dbplyr dplyr lazyeval RSQLite stringr tidyr]; }; parsetools = derive2 { name="parsetools"; version="0.1.3"; sha256="1d18cdaw90g3362218d5i1j8n30p46drjygfri79sqgxhidb25sz"; depends=[]; }; - parsnip = derive2 { name="parsnip"; version="0.1.0"; sha256="0z28dwm1z5crlgrpkxfdllynhnhbr91qp7c03pv25wpkf445ypxb"; depends=[dplyr generics globals glue magrittr prettyunits purrr rlang tibble tidyr vctrs]; }; + parsnip = derive2 { name="parsnip"; version="0.1.3"; sha256="12121qj1800i7g3km5kqzlb7hms55crmp6il575c2i475h5qx8d3"; depends=[dplyr generics globals glue magrittr prettyunits purrr rlang tibble tidyr vctrs]; }; partDSA = derive2 { name="partDSA"; version="0.9.14"; sha256="1kp0cdsdjiay349jz22iqfzvspny8s343cfan8xahgf931k9h8p6"; depends=[survival]; }; partialAR = derive2 { name="partialAR"; version="1.0.12"; sha256="0fv1ffgqdbl04b4cmfmvzwah8ms9cxx3dsdralkk92bxxhybcjsl"; depends=[data_table ggplot2 KFAS MASS plot3D Rcpp tseries urca zoo]; }; partialCI = derive2 { name="partialCI"; version="1.2.0"; sha256="0hi936yg4g5bg61ix2i68f8q4c5nvvshl2728ynz1rl970qfcrp7"; depends=[data_table ggplot2 glmnet KFAS MASS partialAR Rcpp TTR zoo]; }; partialOR = derive2 { name="partialOR"; version="0.9"; sha256="02vbvln8lswysaafpxq5rxb6crp7yhlc13i42kybv8fr10jaagjj"; depends=[nnet]; }; particles = derive2 { name="particles"; version="0.2.2"; sha256="0pncfpk89hsfjch8h5b86rx7hsgdyg9bsxc54f5bf0y8gh9v98qj"; depends=[digest dplyr igraph magrittr mgcv Rcpp rlang tidygraph]; }; - partition = derive2 { name="partition"; version="0.1.1"; sha256="16hgyd30cv3n9a4qnln6ix8a912gcxr43b869xwp9786pz2g3mix"; depends=[crayon dplyr forcats ggplot2 infotheo magrittr MASS pillar purrr Rcpp RcppArmadillo rlang stringr tibble tidyr]; }; + partition = derive2 { name="partition"; version="0.1.2"; sha256="0yjf000ky34lyl8b7mdya5svz3rbih3irfzhj53faca3g2y6xy0x"; depends=[crayon dplyr forcats ggplot2 infotheo magrittr MASS pillar purrr Rcpp RcppArmadillo rlang stringr tibble tidyr]; }; partitionBEFsp = derive2 { name="partitionBEFsp"; version="1.0"; sha256="0rirqk9v5jbjs2jpjjkg7kvay9f093q2gwx5fx3bm9b0f5869w1b"; depends=[]; }; partitionComparison = derive2 { name="partitionComparison"; version="0.2.5"; sha256="0wzg2r4c61fd3cp8kwsc313gwcizh5aavw361lc9gqn57p1kml1j"; depends=[lpSolve Rdpack]; }; partitionMap = derive2 { name="partitionMap"; version="0.5"; sha256="0pi066xaaq0iqr0d7cncdzjd7bacmgrivc4qvhqx0y7q1vifrdjm"; depends=[randomForest]; }; @@ -11484,8 +11911,8 @@ in with self; { partitions = derive2 { name="partitions"; version="1.9-22"; sha256="1qqy4df28wy4q0g572azrj171jlhvrnzbh7x0wr2g7v6gr20y0ns"; depends=[gmp polynom sets]; }; partools = derive2 { name="partools"; version="1.1.6"; sha256="0w7p88y4ab4v14k16k95cyb5f3yl2g6ban11775rmi2h9xqkfxk8"; depends=[data_table pdist regtools]; }; partsm = derive2 { name="partsm"; version="1.1-2"; sha256="0cv3lgkdkn97bc85iwlv9w5pmqwwwsgb717zxnbgb5mzf4xn3f3g"; depends=[]; }; - party = derive2 { name="party"; version="1.3-4"; sha256="0zqyyzpri61kj300b6kqspfhwqvx4c8svia726cg33lnwx7vv2bn"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; - partykit = derive2 { name="partykit"; version="1.2-7"; sha256="1h8jld63mm7ri9cny8jz0cibma68n7p66qvyn9g0jx99kir3r6aw"; depends=[Formula inum libcoin mvtnorm rpart survival]; }; + party = derive2 { name="party"; version="1.3-5"; sha256="0r0kslgynfzir7rpc6zsm0a1qmi64gg84drbaihq6janzv9kafhw"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; + partykit = derive2 { name="partykit"; version="1.2-9"; sha256="18nc6vvj1cy8ly2hqixg544sbg8vbpzwsr1cdlzrqfykd0pzgkvf"; depends=[Formula inum libcoin mvtnorm rpart survival]; }; parviol = derive2 { name="parviol"; version="1.1"; sha256="1sfgic86ssd5wjf9ydss9kjd3m4jmm2d1v896sjsv8bydwymbpx3"; depends=[vioplot]; }; parzer = derive2 { name="parzer"; version="0.1.4"; sha256="09rlqz4vhlg6zl48y2xpm6hdmwc74lcpid3qyha9bvy0gnimz5f4"; depends=[Rcpp]; }; pass_lme = derive2 { name="pass.lme"; version="0.9.0"; sha256="1rxm509vnkdvdxii4jwniirdb2pv90rjkf6wjc9zrjh88jrl678k"; depends=[]; }; @@ -11495,15 +11922,17 @@ in with self; { pastecs = derive2 { name="pastecs"; version="1.3.21"; sha256="0z4dic94ar646w7zc2ggi5hgvf2qnznsani94c5pyql8zspz47lc"; depends=[boot]; }; pastis = derive2 { name="pastis"; version="0.1-2"; sha256="0211pzj3xrmqgxjpspij95kmlpa2klpicw49n6pnz2g1fapjy2bd"; depends=[ape caper]; }; patPRO = derive2 { name="patPRO"; version="1.1.0"; sha256="1l6q6glklmfgivs4gw0v8q4qa57wr2bna477sn2v401hcwmgnfyn"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; }; - patchDVI = derive2 { name="patchDVI"; version="1.9.1616"; sha256="1akdlzw8v2p1zz09bm88d63jyxj7fv5h50p459p9ml4yc816xvji"; depends=[]; }; + patchDVI = derive2 { name="patchDVI"; version="1.10.1"; sha256="14zhl2skj20gc09ycrycdq2slqrpbh6nf0lcsxf55kvshnwnmknc"; depends=[]; }; patchSynctex = derive2 { name="patchSynctex"; version="0.1-4"; sha256="1li3kw7a77sx6dss8pnxzb0p0sdy1kfm1zdnmhhj043zihrryd5p"; depends=[stringr]; }; - patchwork = derive2 { name="patchwork"; version="1.0.0"; sha256="0qrwbcswh7ylrmghi17k6wk7w51cz6mcmvcyyd41hy3m2ywmkywb"; depends=[ggplot2 gtable]; }; + patchwork = derive2 { name="patchwork"; version="1.0.1"; sha256="0wm93a40idrkzn5hpnykhznvh7hdbfqw0dkzzn0zk83qlwyc9g02"; depends=[ggplot2 gtable]; }; patentsview = derive2 { name="patentsview"; version="0.2.2"; sha256="003pcddz6adsh893xvlb9d72r316z14nlp3fwm1vbc50hpa24w6z"; depends=[httr jsonlite]; }; pathdiagram = derive2 { name="pathdiagram"; version="0.1.9.1"; sha256="018frv1n3x0bf1682jibnm5k2dlkg85xa9mps28l22a0z8bplbv5"; depends=[shape]; }; - pathfindR = derive2 { name="pathfindR"; version="1.4.2"; sha256="0vzzz36ih57s04izc54iznrs2k11mvj7fwwjgq54vlhv47j3c157"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 ggraph igraph KEGGgraph KEGGREST knitr magick org_Hs_eg_db R_utils rmarkdown]; }; + pathfindR = derive2 { name="pathfindR"; version="1.5.0"; sha256="1wiqhzqcygd6qy1wpjfnbpbczis4y0bf91r2rgbwxs26cysd5zrb"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 ggraph ggupset igraph KEGGgraph KEGGREST knitr magick msigdbr org_Hs_eg_db pathfindR_data R_utils rmarkdown]; }; + pathfindR_data = derive2 { name="pathfindR.data"; version="1.0.0"; sha256="0yh96rsx6ra5n4mmll3jfshvr3jm91pvlvc4k2igj0ij9xgzsfyy"; depends=[]; }; pathlibr = derive2 { name="pathlibr"; version="0.1.0"; sha256="0z8iz765fi1s2770p7dwwv2anihfw86kb5dwg081wb6474wiq6v8"; depends=[glue logging magrittr purrr R6 rlang]; }; pathmapping = derive2 { name="pathmapping"; version="1.0.2"; sha256="0kx4wxf6lhi58sif8fzr5w4wa0i5253fq4v0ynp721fv1hkvmhvz"; depends=[]; }; - pathmox = derive2 { name="pathmox"; version="0.2.0"; sha256="0hcllnpjjays35yngz309f1gcx9qg5z9h302kg9mhxs90470x4w0"; depends=[plspm tester]; }; + pathmodelfit = derive2 { name="pathmodelfit"; version="1.0.4"; sha256="1g791z33289ggwa0dwirdwwl16qddlnm2riijwbcfabfkl7shg6x"; depends=[lavaan]; }; + paths = derive2 { name="paths"; version="0.1.0"; sha256="0yyllrcq7p22xj9b60l7pgjsvwqqz9k5mfsa1nmm745sqh3fbahr"; depends=[BART boot gbm ggplot2 metR pryr tidyr twang]; }; patrick = derive2 { name="patrick"; version="0.0.1"; sha256="16r0q3d9bq06393v46gabn9y9w2w7nqjcl65b7y2ryp35nv0aqsi"; depends=[dplyr purrr rlang testthat tibble]; }; patternator = derive2 { name="patternator"; version="0.1.0"; sha256="0s4vrhdfblllnhpz2awhhrkwm8d4170xg7fpsp7kvvqy8z8biwvi"; depends=[data_table]; }; patternize = derive2 { name="patternize"; version="0.0.2"; sha256="0hd6l66ybrjjndad5m2li9qqsjd0k2blhvjm469j6ab95073zq9f"; depends=[abind dplyr imager magrittr Morpho purrr raster rgdal RNiftyReg sp vegan]; }; @@ -11511,20 +11940,20 @@ in with self; { pauwels2014 = derive2 { name="pauwels2014"; version="1.0"; sha256="1b7whn13lgydc69kg1fhnwkxirw0nqq75cfvii0yg0j4p8r1lw42"; depends=[deSolve ggplot2]; }; pavo = derive2 { name="pavo"; version="2.4.0"; sha256="1f71plrm5j5k66lw0za1a16rfjbl1gq4cwczybrc9rpzz6a0i6li"; depends=[cluster future_apply geometry lightr magick plot3D progressr sp viridisLite]; }; pawacc = derive2 { name="pawacc"; version="1.2.2"; sha256="0d5k0bq8zmb7sjvba3ljp97mba2iycnw44rnsnn2aajs02l1c2xg"; depends=[SparseM]; }; - paws = derive2 { name="paws"; version="0.1.7"; sha256="02kg1mlcpmf8z69xqc1ylbpzr3mwizkzkzz7kwb769wzd2k9d1m5"; depends=[paws_analytics paws_application_integration paws_compute paws_cost_management paws_customer_engagement paws_database paws_machine_learning paws_management paws_networking paws_security_identity paws_storage]; }; - paws_analytics = derive2 { name="paws.analytics"; version="0.1.7"; sha256="135s4sxix8jf3gzk5b8v8z6x6afkhbv48pkbn0l0kzx05jvpy1py"; depends=[paws_common]; }; - paws_application_integration = derive2 { name="paws.application.integration"; version="0.1.7"; sha256="07pllnyrmv1az00n5y76zqd0zsln29d1q9zynw9xpjwrbplialb8"; depends=[paws_common]; }; - paws_common = derive2 { name="paws.common"; version="0.3.0"; sha256="0x6s30qacz0czvshamfr1p9q4x10kmwx9iwa23yv7jmd0l44gj2k"; depends=[base64enc digest httr ini jsonlite xml2]; }; - paws_compute = derive2 { name="paws.compute"; version="0.1.7"; sha256="1c2g4wdfv0s876va4qpma5rv2hr5gkj60si820dwk6zqrv8l48f4"; depends=[paws_common]; }; - paws_cost_management = derive2 { name="paws.cost.management"; version="0.1.7"; sha256="01hf9z967bflxb0xplilay3mrwk8sg376hh2fc4a3plnqbg05cap"; depends=[paws_common]; }; - paws_customer_engagement = derive2 { name="paws.customer.engagement"; version="0.1.7"; sha256="1s5p4cp5hndk4saf8y5bl6ml0gk83g7bh0wqdb4phxqgcyg1c7rq"; depends=[paws_common]; }; - paws_database = derive2 { name="paws.database"; version="0.1.7"; sha256="09nnq3x1fd7m30gyr49ip5x4yq0bbm3l1dqbs0h8pifsrajajb0h"; depends=[paws_common]; }; - paws_machine_learning = derive2 { name="paws.machine.learning"; version="0.1.7"; sha256="0kdlsgw9pkkdzy2km0f16gc170yifincbcsj2xzp9968wllpz0q1"; depends=[paws_common]; }; - paws_management = derive2 { name="paws.management"; version="0.1.7"; sha256="1cfrqii3ablrmq82jz8ak7j81c5nzg7fs3vhmgqf6jxpr098hwrq"; depends=[paws_common]; }; - paws_networking = derive2 { name="paws.networking"; version="0.1.7"; sha256="1zwpyfs9vxljgb48da1cilb0b5vn9cqizykhywysnp1cs89xjb0r"; depends=[paws_common]; }; - paws_security_identity = derive2 { name="paws.security.identity"; version="0.1.7"; sha256="1pjcd6g8kml9vs5cqzingg22prp85dfdkwgicgqbm20r18chc7lw"; depends=[paws_common]; }; - paws_storage = derive2 { name="paws.storage"; version="0.1.7"; sha256="1v33i75vd30arhqa98snd4fq4b0wpwpjys72781myfcb64l7fph4"; depends=[paws_common]; }; - pbapply = derive2 { name="pbapply"; version="1.4-2"; sha256="1xmk4p006v8gij26rs6kp5prjyf2n32nqjxiyp8a6kvgyc4z46dc"; depends=[]; }; + paws = derive2 { name="paws"; version="0.1.9"; sha256="1z7brgfja55ahn9wlsbj2lyb1x12x9ac7j4w81gmkwrm1pmjqldw"; depends=[paws_analytics paws_application_integration paws_compute paws_cost_management paws_customer_engagement paws_database paws_machine_learning paws_management paws_networking paws_security_identity paws_storage]; }; + paws_analytics = derive2 { name="paws.analytics"; version="0.1.9"; sha256="03pjswa2xxm693wm2q2gqyl57i2hs8vzvklwd0qxac1mz3hylsg0"; depends=[paws_common]; }; + paws_application_integration = derive2 { name="paws.application.integration"; version="0.1.9"; sha256="1y9q4sswl8c3amj2rvgzc3xbvyjfd9b9n7ixmkig078bvi4rg4gw"; depends=[paws_common]; }; + paws_common = derive2 { name="paws.common"; version="0.3.3"; sha256="0yjg6rilm11j2d5x3zyq9nq9x5mpxr4yj4vr4lmv8v3wbjirb6cl"; depends=[base64enc digest httr ini jsonlite xml2]; }; + paws_compute = derive2 { name="paws.compute"; version="0.1.9"; sha256="1ha8jbz13vzr6qgz28sazfnm0f34wgllmns97zzm2wi4z6x8dqr6"; depends=[paws_common]; }; + paws_cost_management = derive2 { name="paws.cost.management"; version="0.1.9"; sha256="0dwk73i1xg0i0kn6vyzl880c18imwj57jhhjwklfa95x4p5cf0mr"; depends=[paws_common]; }; + paws_customer_engagement = derive2 { name="paws.customer.engagement"; version="0.1.9"; sha256="0vljkfj133q5mdvmq9dm8yvk8f4mgxhs8pz7shc9ym2bvd7nlffn"; depends=[paws_common]; }; + paws_database = derive2 { name="paws.database"; version="0.1.9"; sha256="0m04pp0fa8ssdwkp6wfmshcxi8qifz76pia4pz54kypiz60y02rs"; depends=[paws_common]; }; + paws_machine_learning = derive2 { name="paws.machine.learning"; version="0.1.9"; sha256="03qdd3w513b96shh335b3giq368fac9i12xfbawlq9wc3hj6b72x"; depends=[paws_common]; }; + paws_management = derive2 { name="paws.management"; version="0.1.9"; sha256="19nr4bc35hmyqpy33gj5pgr3hqv220a7nfzha5hgdd6njsmzfyxn"; depends=[paws_common]; }; + paws_networking = derive2 { name="paws.networking"; version="0.1.9"; sha256="18r74vi5a8j3fks61gsmwkzbd4bfp8hcfzzwy7dh1sn7536b8jqp"; depends=[paws_common]; }; + paws_security_identity = derive2 { name="paws.security.identity"; version="0.1.9"; sha256="1nkr5qcn3prw2q694w7phqfqbildp2ymd14lvdv7lrzmz2lb37wz"; depends=[paws_common]; }; + paws_storage = derive2 { name="paws.storage"; version="0.1.9"; sha256="0df5gaj07iva38mj1yz39xy8hhf08wkwlrzmn99l9bppqzbpajy9"; depends=[paws_common]; }; + pbapply = derive2 { name="pbapply"; version="1.4-3"; sha256="08gb6c8p1r9z8wrfidj2dfn6irm43k6f4448d1d6nxmy6msjirlg"; depends=[]; }; pbatR = derive2 { name="pbatR"; version="2.2-13"; sha256="01ra1ggdpxdl1xqjdh86qynr5gkgzw01ww6j9bwgx4mj20i6j1ha"; depends=[rootSolve survival]; }; pbdBASE = derive2 { name="pbdBASE"; version="0.5-3"; sha256="1f90bk1mp1s03177b9g5w5ni77jzrzc1pl3bjx0w0fjbjs1myn79"; depends=[pbdMPI pbdSLAP]; }; pbdMPI = derive2 { name="pbdMPI"; version="0.4-3"; sha256="1mxikhr0qfqksr62v5dxvzgqx07391p7ikjk9g2w4xzrzmxs8fc3"; depends=[float rlecuyer]; }; @@ -11534,22 +11963,24 @@ in with self; { pbdSLAP = derive2 { name="pbdSLAP"; version="0.3-0"; sha256="1jxpgsxkzi3s1qf3g01xma9mqwgi1b22x5lh5xnr78wa0764dyd3"; depends=[pbdMPI rlecuyer]; }; pbdZMQ = derive2 { name="pbdZMQ"; version="0.3-3"; sha256="1jkfcfhspvqra7vbllrvkz3jx8j7d0ang6zzcdjgpb7200sc29mf"; depends=[]; }; pbivnorm = derive2 { name="pbivnorm"; version="0.6.0"; sha256="05jzrjqxzbcf6z245hlk7sjxiszv9paadaaimvcx5y5qgi87vhq7"; depends=[]; }; + pbixr = derive2 { name="pbixr"; version="0.1.3"; sha256="01nzi44l1n29sgc19zj33ki7lbrw0zw7ckvap1w0v27h2byg670x"; depends=[dplyr formatR jsonlite stringr textclean xml2 zip]; }; pbkrtest = derive2 { name="pbkrtest"; version="0.4-8.6"; sha256="0s5xhhrhv5i9680lw6af9lj2x4jc3fygmzzk0jjpxnb8g4b3p1jz"; depends=[lme4 magrittr MASS Matrix]; }; pbm = derive2 { name="pbm"; version="1.1.0"; sha256="054navz4fmn25nq3lsfnsnm35shj9wq4qz69d4ajw0q09gnb1cy8"; depends=[]; }; pbmcapply = derive2 { name="pbmcapply"; version="1.5.0"; sha256="0i58gcqpnbyvc448qfgm45b7rpbmrnagsvk1h1hsqchbbicfslnz"; depends=[]; }; pbo = derive2 { name="pbo"; version="1.3.4"; sha256="0v522z36q48k4mx5gym564kgvhmf08fsadp8qs6amzbgkdx40yc4"; depends=[lattice]; }; pbs = derive2 { name="pbs"; version="1.1"; sha256="0cpgs6k5h8y2cia01zs1p4ri8r7ljg2z4x8xcbx73s680dvnxa2w"; depends=[]; }; - pbv = derive2 { name="pbv"; version="0.3-19"; sha256="18cypzbyamafq942bwp3k0ml3crwcpxa6rdck8657kkc22lq05g5"; depends=[Rcpp RcppArmadillo]; }; - pcFactorStan = derive2 { name="pcFactorStan"; version="1.4.0"; sha256="0fj2732q5kyal8x4s30dxmgpngq9x4wzgjsna5r5lg7izd0s0hk1"; depends=[BH igraph loo mvtnorm Rcpp RcppEigen reshape2 rstan StanHeaders]; }; + pbv = derive2 { name="pbv"; version="0.4-22"; sha256="0658k8ql78y756l15wx0i6gpicgkbczwc6g7dg15i81xy1hg49qb"; depends=[Rcpp RcppArmadillo]; }; + pcFactorStan = derive2 { name="pcFactorStan"; version="1.5.1"; sha256="1g2cxzpq2hqf6mpg4fdzkn009rj4i7r7kkbnabbbmwiay0kvaxg8"; depends=[BH igraph lifecycle loo mvtnorm Rcpp RcppEigen reshape2 rstan StanHeaders]; }; pcIRT = derive2 { name="pcIRT"; version="0.2.4"; sha256="0crll51s14nisnaxjln7bc3b1a181v358nfkh1p5iiyn98clacl6"; depends=[combinat Rcpp]; }; - pcLasso = derive2 { name="pcLasso"; version="1.1"; sha256="1wdwin6xszysydspxjb8b6r3y416ri3zndh0s142b2487lhmqkb6"; depends=[svd]; }; pca3d = derive2 { name="pca3d"; version="0.10.1"; sha256="1fz7p95hhvgzlh1vxlifyzbqccv4rsm7yldzca5p0dwm4rgsdkd4"; depends=[ellipse rgl]; }; pcaBootPlot = derive2 { name="pcaBootPlot"; version="0.2.0"; sha256="1320d969znk9xvm1ylhc3a31nynhzyjpbg1fsryq72nhf8jxijaa"; depends=[FactoMineR RColorBrewer]; }; pcaL1 = derive2 { name="pcaL1"; version="1.5.4"; sha256="1myl12537bxwmyicm8v891rflq8g6bhz9j0gcjcqgf9z80y52ayc"; depends=[]; }; pcaPP = derive2 { name="pcaPP"; version="1.9-73"; sha256="1z2kdf9gfp965xbcd4rg6vf20d1bl443na0qjkpq7gmzpaq6cifa"; depends=[mvtnorm]; }; - pcadapt = derive2 { name="pcadapt"; version="4.3.1"; sha256="0xa2dsr0f0a5kdbnbf3c4fznzvv9s3h3yp1wfgjyd8ilp4lk8nlx"; depends=[bigutilsr data_table ggplot2 magrittr mmapcharr Rcpp rmio RSpectra]; }; - pcalg = derive2 { name="pcalg"; version="2.6-10"; sha256="0sjxkbplrdgql2xap8p3025n7hnmp5cf5j17bay5riv3wwhfd225"; depends=[abind bdsmatrix BH clue corpcor fastICA ggm graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; - pccc = derive2 { name="pccc"; version="1.0.3"; sha256="1dd1kh0gx7ffwnmxqn3zbcsxiav4z70psis24dgqxwq42r0kw5mk"; depends=[dplyr Rcpp]; }; + pcadapt = derive2 { name="pcadapt"; version="4.3.3"; sha256="01wvcflfsnlsq23vq03n870fxsab3ab29k26nqlqxw82lbvx99s3"; depends=[bigutilsr data_table ggplot2 magrittr mmapcharr Rcpp rmio RSpectra]; }; + pcal = derive2 { name="pcal"; version="1.0.0"; sha256="07119k5f4h9jc48bicl4q5i7bdrkha3rz22r6g44c8ilnkvjhw6j"; depends=[Rdpack]; }; + pcalg = derive2 { name="pcalg"; version="2.6-11"; sha256="1ljwwwrvv3m3qbg33fizr6ykhnfsmdn25xrr4w0rgb4i7l53kgak"; depends=[abind bdsmatrix BH clue corpcor fastICA ggm graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; + pcalls = derive2 { name="pcalls"; version="1.0"; sha256="1vdgvrzfv69p3p5zc9i6gxq53f36s0mia4idzrbsda661f1bhmxk"; depends=[]; }; + pccc = derive2 { name="pccc"; version="1.0.5"; sha256="0jh8yadks76ip9jmgvld9nycdm74f5gllkyhfmnrir8vi6xwvbad"; depends=[dplyr Rcpp]; }; pcdpca = derive2 { name="pcdpca"; version="0.4"; sha256="0ys4hrin0w3f87d1d986wvrfkfwapzj9hz7d7v92r60ns74g7r5m"; depends=[fda freqdom]; }; pcds = derive2 { name="pcds"; version="0.1.1"; sha256="1y6msc2b35gcd99yb1zv13li1ilw6c53pcw7jmly4p7sb35kqlqb"; depends=[combinat interp plot3D plotrix Rdpack]; }; pcensmix = derive2 { name="pcensmix"; version="1.2-1"; sha256="1yrz4hdj52in8z65qyl18kh7frv75rb8ss5ljv3vbm6yhxi32jnd"; depends=[]; }; @@ -11557,13 +11988,13 @@ in with self; { pcg = derive2 { name="pcg"; version="1.1"; sha256="194j72hcp7ywq1q3dd493pwkn1fmdg647gmhxcd1jm6xgijhvv87"; depends=[]; }; pcgen = derive2 { name="pcgen"; version="0.2.0"; sha256="1v2fmxbj9gz5sg0hizw03ad8cfm9v25708h7fvnf6gb42b2mmyb3"; depends=[ggm graph Hmisc lme4 MASS Matrix pcalg sommer]; }; pch = derive2 { name="pch"; version="1.4"; sha256="0vfx0jirmfcy47l6xw1yvss68624605378cpqc58ygllwddcqz1y"; depends=[survival]; }; + pchc = derive2 { name="pchc"; version="0.1"; sha256="02q5vlj7qrv76ja92kdg0cl47vdfdda3r8d2qz86d2vvpz4qnfv8"; depends=[bnlearn Rfast robustbase]; }; pcmabc = derive2 { name="pcmabc"; version="1.1"; sha256="1x4qvs5v134z93j1r3zg08kynqyhgd2yc3y2vk0vif8mabvx3zv4"; depends=[ape mvSLOUCH phangorn TreeSim yuima]; }; pcnetmeta = derive2 { name="pcnetmeta"; version="2.6"; sha256="0rpd1bgg932xhj03fnskhbg7ni9nfd8qrvxvix8qmbgw8bwdsbgd"; depends=[coda rjags]; }; pco = derive2 { name="pco"; version="1.0.1"; sha256="0k1m450wfmlym976g7p9g8arqrvnsxgdpcazk5kh3m3jsrvrcchf"; depends=[]; }; pcr = derive2 { name="pcr"; version="1.2.2"; sha256="1lmgm8k3s7780ivrdj0zk1ninx7b5jffir6q5p2p47h62qqjmp5d"; depends=[ggplot2]; }; - pcrsim = derive2 { name="pcrsim"; version="1.0.2"; sha256="04177xl513k01prmf93kha91dyxmb9v80d1y4lz73fxsifj6bhar"; depends=[data_table ggplot2 gWidgets mc2d plyr strvalidator]; }; pcse = derive2 { name="pcse"; version="1.9.1.1"; sha256="1rb9146vjkf36vc5v3frykmsff7kp6qp1hhmj8pak583in4rz8f8"; depends=[]; }; - pct = derive2 { name="pct"; version="0.4.0"; sha256="0wsf3n1yisxjcd9gbfx94671bkfdh2j4il6c6gdqmr6wkj0n74kp"; depends=[boot readr sf stplanr]; }; + pct = derive2 { name="pct"; version="0.4.1"; sha256="0j554xrb8pd1lsxc10d75k21q5yvfr3l9xawl4vzj1gw3cs2axpx"; depends=[boot readr sf stplanr]; }; pcts = derive2 { name="pcts"; version="0.14-4"; sha256="0c5r71d6c08g5v5cwvy93fwp1lhmqh99azq8nn1ikfxadi7kndln"; depends=[BB gbutils lagged ltsa lubridate Matrix mcompanion PolynomF Rdpack sarima zoo]; }; pdR = derive2 { name="pdR"; version="1.7"; sha256="05rnyb9znb71ilr9kf62x30knby1rm0p4ain220wvb62vkz054d7"; depends=[boot car coefplot lmtest papeR plm sandwich]; }; pdSpecEst = derive2 { name="pdSpecEst"; version="1.2.4"; sha256="1sf2d7vh7a1qc0cq230an8pzg9qi9g640z0ql8x2pp9wfawfzn1f"; depends=[ddalpha multitaper Rcpp RcppArmadillo Rdpack]; }; @@ -11571,33 +12002,35 @@ in with self; { pder = derive2 { name="pder"; version="1.0-1"; sha256="147fc5swmh0qrg7k3q3gpnvl9f7hhjjzwi8f5dc4fkyj14qi5bm5"; depends=[]; }; pdfCluster = derive2 { name="pdfCluster"; version="1.0-3"; sha256="13m7b2wivvf58vyqbysj4r04w0nj2b5x0xnaxip712a6c66x1h7l"; depends=[geometry]; }; pdfetch = derive2 { name="pdfetch"; version="0.2.4"; sha256="0qskxak1mb8h038ly4hlsjvkz8nyinaraqh5f91d8nyzjzhj7x3c"; depends=[curl httr jsonlite lubridate readr reshape2 XML xml2 xts zoo]; }; + pdfminer = derive2 { name="pdfminer"; version="1.0"; sha256="0hm9nalazqcg4n1sqcjan8wm1rvv4lnflmlkrqkj5yhhmza7xkfh"; depends=[checkmate jsonlite]; }; pdfsearch = derive2 { name="pdfsearch"; version="0.3.0"; sha256="0mk1s8b7cdz025xn9kg5xnw388sndhjm80ckf71daxviknrzcscf"; depends=[pdftools stringi tibble tokenizers]; }; pdftables = derive2 { name="pdftables"; version="0.1"; sha256="1gnwjijr89cczchc7yi4w5xiw0dalbymvj23rymm8cfra34iwn5p"; depends=[httr]; }; - pdftools = derive2 { name="pdftools"; version="2.3"; sha256="1v193v74higrkafcn96wank86wixnb0p9x3z2j2ddlvypc355i69"; depends=[qpdf Rcpp]; }; + pdftools = derive2 { name="pdftools"; version="2.3.1"; sha256="01i5g2mjkshis0zlm7lrvi7kkzl4dn3if1hzwkgzf9n2mi33ndsx"; depends=[qpdf Rcpp]; }; pdist = derive2 { name="pdist"; version="1.2"; sha256="18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd"; depends=[]; }; pdmod = derive2 { name="pdmod"; version="1.0.1"; sha256="04bk9gjg2c55hk6k1hy0m29927s8a5ig6mr4xb89npam68g0pcms"; depends=[mco]; }; pdp = derive2 { name="pdp"; version="0.7.0"; sha256="0wcszaq4c14f9a2r1gd32mzhs035jlg2w8mkfklzigcj7fv9xmi8"; depends=[ggplot2 gridExtra lattice magrittr mgcv plyr viridis]; }; pdqr = derive2 { name="pdqr"; version="0.2.1"; sha256="1444r51lh66kmhvkp8ivr95zlnxfgv28whl0axwb56hf5vi44lp9"; depends=[]; }; pds3 = derive2 { name="pds3"; version="0.5.0"; sha256="1hipi4ygk30khrrslxq3m9qdichazhrl34k444shs7gi6wjx9ilr"; depends=[rly]; }; - pdynmc = derive2 { name="pdynmc"; version="0.8.0"; sha256="1m87vgr6hh3g0j1x0725b4x6a28h6ks59v0vl8c4hki131k4rmf5"; depends=[data_table dplyr MASS Matrix optimx qlcMatrix Rdpack]; }; + pdxTrees = derive2 { name="pdxTrees"; version="0.4.0"; sha256="0cw1zrkawc2wnbd2pif8732kl92qvklxvx6hnikx3siz22psvbl8"; depends=[dplyr magrittr rlang]; }; + pdynmc = derive2 { name="pdynmc"; version="0.9.1"; sha256="168kicv1h93qhyzvbr681pbnysz1b42sj2ivzsfnfg711w0bp935"; depends=[data_table MASS Matrix optimx qlcMatrix Rdpack]; }; peRiodiCS = derive2 { name="peRiodiCS"; version="0.5.0"; sha256="1366gmn6qfciwcjsfnbl3hfa16ffn11g00fm0kv74ilvm3nnawk3"; depends=[Hmisc rms]; }; peRspective = derive2 { name="peRspective"; version="0.1.0"; sha256="1zz3znzaa80k60jddys5fhxwx4c8lyqymx5fw2zvj654rnk0mmzc"; depends=[crayon dplyr glue httr jsonlite magrittr purrr rlang rlist stringr tibble]; }; peacots = derive2 { name="peacots"; version="1.3"; sha256="128qpz06b0giz80lp9yq9l6pxcjglfr97yickg7z64vzzl2jilmq"; depends=[]; }; peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; }; peakRAM = derive2 { name="peakRAM"; version="1.0.2"; sha256="0mj7f8jqkfky61xag2km0svbgvfmif3c1d8ccav6pv1963cg3cvv"; depends=[]; }; pear = derive2 { name="pear"; version="1.2"; sha256="1ixmyzm72s18qrfv2m8xzh5503k1q90lhddq4sp46m0q7qyxb192"; depends=[]; }; - pearson7 = derive2 { name="pearson7"; version="1.0-2"; sha256="0x8bnlzgmfah8lzdg8skxs7bm8yq0nkrhqi7q43h902j4jl5b8jy"; depends=[]; }; + pearson7 = derive2 { name="pearson7"; version="1.0-3"; sha256="0vdhhds1lngaff7dkx4b1az3syqw8b22w2jskcrw0m49wp1dbbha"; depends=[]; }; pec = derive2 { name="pec"; version="2019.11.03"; sha256="1h6fk3k9w61a9xqhvkm1zdv75nsl06n78036qvcxkcf0bkfxl360"; depends=[foreach prodlim rms survival timereg]; }; - pedSimulate = derive2 { name="pedSimulate"; version="0.0.3"; sha256="0nm8iszmi3f91l09ziw5iwmkdggx9j8w17sx3k2ar4wibq4swsfi"; depends=[]; }; + pedSimulate = derive2 { name="pedSimulate"; version="0.0.4"; sha256="0dz92cwnkb6vwkr18rkxil6cizfib522wxs1agbhz6dx0kv9xbhn"; depends=[]; }; pedgene = derive2 { name="pedgene"; version="3.3"; sha256="0y6kr5ad4fmxljsj0czs9h1dkz63wvqiira9ibgsf0707xb0vh7f"; depends=[CompQuadForm kinship2 Matrix survey]; }; pedigree = derive2 { name="pedigree"; version="1.4"; sha256="1dqfvzcl6f15n4d4anjkd0h8vwsbxjg1lmlj33px8rpp3y8xzdgw"; depends=[HaploSim Matrix reshape]; }; pedigreeTools = derive2 { name="pedigreeTools"; version="0.1"; sha256="0kgbjyw9dlp4s91cyg5w0p2vn2h9pg9ixrhc5pwvkp3v1acd0xfm"; depends=[Matrix]; }; pedigreemm = derive2 { name="pedigreemm"; version="0.3-3"; sha256="1bpkba9nxbaxnivrjarf1p2p9dcz6smf9k2djawis1wq9dhylvsb"; depends=[lme4 Matrix]; }; - pedmut = derive2 { name="pedmut"; version="0.1.0"; sha256="0b8qlcl4g8kjix4q1drs1yk7wnilxqslv4p8svyabcg8wb4bnvwa"; depends=[]; }; + pedmut = derive2 { name="pedmut"; version="0.2.0"; sha256="0851r4yl5n1mf8pk3nik5kcnv12ffxc1hl1wxp6b81qz5lbfwxaf"; depends=[]; }; pedometrics = derive2 { name="pedometrics"; version="0.7.0"; sha256="0rqldc67yrcg16i5q9wrmfmh3lw3qrfdxwdb4mxkjxx18v4fv737"; depends=[lattice latticeExtra Rcpp]; }; - pedprobr = derive2 { name="pedprobr"; version="0.2.0"; sha256="1s986n05wciq0nwvaqhq5d4rdzdh9sli66qihmfm43rqy246kjlr"; depends=[pedmut pedtools]; }; + pedprobr = derive2 { name="pedprobr"; version="0.3"; sha256="0inxlspq2khcv7r60rgavjh6ajyxbafddmwdgpn39klwp7h6yzcb"; depends=[pedmut pedtools]; }; pedquant = derive2 { name="pedquant"; version="0.1.5"; sha256="01kmagaapx5qlvar0l862rl8s1caqzdld3qjygxi9zl232042x89"; depends=[curl data_table ggplot2 gridExtra httr jsonlite readr readxl rvest scales stringi TTR xml2 zoo]; }; - pedtools = derive2 { name="pedtools"; version="0.9.3"; sha256="1jc11d1hd4wwc3lfa5h7g9sy6crybidc2mlasc3sbasjdzr1cyxb"; depends=[kinship2]; }; + pedtools = derive2 { name="pedtools"; version="0.9.5"; sha256="1h43jpxxyzmjh8acqcqfx7m2xdxnwqy92ph93hqwng4fqvfpva39"; depends=[kinship2]; }; pegas = derive2 { name="pegas"; version="0.13"; sha256="002i7s4g0nhnq0v05gs0yssqiyhpq2f7rw2rhn31hsbgxc86frvy"; depends=[adegenet ape]; }; pems_utils = derive2 { name="pems.utils"; version="0.2.26.4"; sha256="13d5cg2wdz84inby017bra6xzwhkp5qcy1b213r387fq771h2xrx"; depends=[baseline dplyr ggplot2 lattice latticeExtra loa RColorBrewer Rcpp rlang]; }; penDvine = derive2 { name="penDvine"; version="0.2.4"; sha256="0znpvsr7zy2wgy7znha1qiajcrz1z6mypi3f5hpims33z7npa7dl"; depends=[doParallel fda foreach lattice latticeExtra Matrix quadprog TSP]; }; @@ -11606,27 +12039,30 @@ in with self; { penalized = derive2 { name="penalized"; version="0.9-51"; sha256="1zcrwa93mc27qj3g4ayc2k895r6g8q0g6qb2azmvj7wqk750va7a"; depends=[Rcpp RcppArmadillo survival]; }; penalizedLDA = derive2 { name="penalizedLDA"; version="1.1"; sha256="1bw5wiixmmg1vr3v0d59vh67f0gy2rvr30bi58skvrkb25qcjq6l"; depends=[flsa]; }; penalizedSVM = derive2 { name="penalizedSVM"; version="1.1.2"; sha256="03zw95bc6svbnzak9x72s3b8l9gh581mxn2di1fl89gxlh864amd"; depends=[corpcor e1071 lhs MASS mlegp statmod tgp]; }; - penaltyLearning = derive2 { name="penaltyLearning"; version="2019.5.29"; sha256="0m4smrpsw9pr8vpnx75yxp3q2z8fn25c9f2sxaqv2vjwdnyza5sx"; depends=[data_table geometry ggplot2]; }; + penaltyLearning = derive2 { name="penaltyLearning"; version="2020.5.13"; sha256="0297rp5zn6d0axl44i3baq2vqvhrx6s8irrysvqdcx1rkishf4j0"; depends=[data_table ggplot2]; }; pencopulaCond = derive2 { name="pencopulaCond"; version="0.2"; sha256="18hjjxnd0l2ms20ddqkghfbd4as5kq2rgwqzpz4y38k6nw76x511"; depends=[doParallel fda foreach igraph lattice latticeExtra pacotest quadprog TSP]; }; pendensity = derive2 { name="pendensity"; version="0.2.13"; sha256="1wcsib7m2161nqqrmgdvrj7lr8zq6njc9xr935hwfh3qbbgkmfjb"; depends=[fda lattice]; }; pense = derive2 { name="pense"; version="1.2.9"; sha256="0ls573kx3z09v848fi5pvidc5l2dhmqv9vvyjspzzfiff3z6w09i"; depends=[Matrix Rcpp RcppArmadillo robustbase]; }; pensim = derive2 { name="pensim"; version="1.3.2"; sha256="12rh9n6jjnlzjsdjjw60ams7l0n05skwkbql5d0jqrmpbxrca6rp"; depends=[MASS penalized]; }; peperr = derive2 { name="peperr"; version="1.1-7.1"; sha256="12k9crhsv3p4zrcbyr85cfwp68z3r1w2kb62g7jb7h311c7zykjx"; depends=[snowfall survival]; }; + peppm = derive2 { name="peppm"; version="0.0.1"; sha256="1lvk1rjsx39mb93s9pclriw4fmf1sx05s59qqx5m3aqb4q8ffxkg"; depends=[Rcpp]; }; + pepr = derive2 { name="pepr"; version="0.3.2"; sha256="1mfs31d050z6yq3gm5gnh3z3pngjm9nin16629s96wj5h0q9q58k"; depends=[data_table pryr stringr yaml]; }; peptider = derive2 { name="peptider"; version="0.2.2"; sha256="109z81x6jcsx2651lclff7ak55zb1i89pyi58rxri40aamx4b1x2"; depends=[discreteRV dplyr plyr]; }; pequod = derive2 { name="pequod"; version="0.0-5"; sha256="0mwrgyrxgiifpnpy15qxpdrdmd7dxqihccrnj5nh8fq9fvwymamg"; depends=[car ggplot2]; }; perARMA = derive2 { name="perARMA"; version="1.6"; sha256="0k70lcqhiiffrwzvh51asnhx68qxpnjnxadarvgpgbc7kfy7lv9x"; depends=[corpcor gnm matlab Matrix signal]; }; perccal = derive2 { name="perccal"; version="1.0"; sha256="1akak068d0g70amj5sbvnqbywzy21l4wz11mhp71b7cp4xmr9n12"; depends=[Rcpp RcppArmadillo RcppEigen]; }; perccalc = derive2 { name="perccalc"; version="1.0.5"; sha256="14557k7khc3l5m0vlam0fvbsb6p78v9gfcnx5ksxcvrab28xj7p3"; depends=[multcomp tibble]; }; perfectphyloR = derive2 { name="perfectphyloR"; version="0.2.0"; sha256="00gvmn66lb9hfli7yc3l5913xpngib1vksg5zjnxqxiwdibjfqx8"; depends=[ape phytools Rcpp RcppArmadillo]; }; - performance = derive2 { name="performance"; version="0.4.5"; sha256="0j6wmnwhfdd3v1a17qmg491q50579knjzscmyr4yk3xr0jbsbg8x"; depends=[bayestestR insight]; }; + performance = derive2 { name="performance"; version="0.4.8"; sha256="1gl3m1pw0wrj9m9cgd0vzbj9swfwjg4aa40gpliplb9y7dcmgi4l"; depends=[bayestestR insight]; }; performanceEstimation = derive2 { name="performanceEstimation"; version="1.1.0"; sha256="08jx2zl6xh0rp54xa70gb717wbfdzfrx9b47i3b3ly41qaf85vrc"; depends=[dplyr ggplot2 parallelMap tidyr]; }; pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; }; - periscope = derive2 { name="periscope"; version="0.4.9-1"; sha256="1cnvzg3gvv5xf0parx55qxd9dp8zdr9gqlz2h5fqhs9d384zb8dl"; depends=[DT ggplot2 logging lubridate openxlsx shiny shinyBS shinydashboard shinydashboardPlus]; }; + periscope = derive2 { name="periscope"; version="0.5.1"; sha256="1l9ryvj7spvl63c99flwj8k1mf4jksg7030hr3cv8xvr7830lf41"; depends=[DT ggplot2 lubridate openxlsx shiny shinyBS shinydashboard shinydashboardPlus]; }; perm = derive2 { name="perm"; version="1.0-0.0"; sha256="0075awl66ynv10vypg63fcxk33qzvxddrp8mi4w08ysvimcyxijk"; depends=[]; }; permGPU = derive2 { name="permGPU"; version="0.14.9"; sha256="10r2qxbvzjxv3520lrn6cwi5akhhwgkhz7yaqxi5vh2f5l0s49wy"; depends=[Biobase foreach RUnit survival]; }; permGS = derive2 { name="permGS"; version="0.2.5"; sha256="0d2kp3c1fmnjjmsvc2qwh6m66yqvy2vrrxgv1fj2i4clsbavfa0y"; depends=[coin survival]; }; permPATH = derive2 { name="permPATH"; version="1.1"; sha256="06h1lqpmkg4ajjh4r837qp094h105n4mpvafnp2nsbv9yyayd4h8"; depends=[R2HTML xtable]; }; - permubiome = derive2 { name="permubiome"; version="1.3"; sha256="0x5c9yf9xl14p1dxbhdggw75pnp0pzvm6bdigfpmhkq9qamdyscf"; depends=[dabestr ggplot2 gridExtra Matrix]; }; + permimp = derive2 { name="permimp"; version="1.0-0"; sha256="0nkl5xga2w79mb7p2zyvznhkmjai1k5zsf1kpfjz1p44xd8ypn13"; depends=[ipred party randomForest survival]; }; + permubiome = derive2 { name="permubiome"; version="1.3.1"; sha256="0a4swfkmqqr8a1psc6rlnxnpm43fj42gjkikcqy8d84wrfz2wrr9"; depends=[dabestr ggplot2 gridExtra Matrix rlang]; }; permuco = derive2 { name="permuco"; version="1.1.0"; sha256="1mp3yp4p1b382c31a3jcmq1n90zvb1lggacb3zdblpmz1yrj4v1c"; depends=[Matrix permute]; }; permutations = derive2 { name="permutations"; version="1.0-6"; sha256="1bygr2fa2qjka4bbx9i6l1iiy15anz427y3zh8hdq0r21aygmi7v"; depends=[magic numbers partitions]; }; permute = derive2 { name="permute"; version="0.9-5"; sha256="0ra8p5mf2590azrkas8z2ry7mif77xqxd29n4zgyi5vll225726j"; depends=[]; }; @@ -11635,6 +12071,7 @@ in with self; { persiandictionary = derive2 { name="persiandictionary"; version="1.0"; sha256="0rgi36ngpiax3p5zk4cdgf3463vgx7zg5wxscs2j7834yh37jwax"; depends=[]; }; personalized = derive2 { name="personalized"; version="0.2.5"; sha256="073mi3g0khba1s8wz01h1xc0zxq0yr05nflf15nss2rv7lh2qazb"; depends=[foreach gbm ggplot2 glmnet kernlab mgcv plotly survival]; }; personograph = derive2 { name="personograph"; version="0.1.3"; sha256="07lrlbw4222l1d5rwn0hfqliyk8sqjf6ipz4n2zwcbk113bb8sy7"; depends=[grImport]; }; + personr = derive2 { name="personr"; version="1.0.0"; sha256="12iyzdc2kksy74npzdgy19lnhm9l9c7f4lkwshmsp6by09kb2dm3"; depends=[ggplot2 rlang rmarkdown shiny whisker]; }; perspectev = derive2 { name="perspectev"; version="1.1"; sha256="175s1nq5z4gfs5qb39lq230g6n0v8fxzs5hr9j2rgx0knpbjfq03"; depends=[ape boot doParallel foreach ggplot2 mapproj sp]; }; perturb = derive2 { name="perturb"; version="2.10"; sha256="07c84x67hzyr70zkmd00f4gxqzcrpizc7w7h2hs22xy6p719a5i2"; depends=[gdata]; }; perturbR = derive2 { name="perturbR"; version="0.1.3"; sha256="1sdk5ls8x66lds4cy40xbl383px4xmrh21cw4bgy83rzbjjzwp2h"; depends=[ggplot2 igraph]; }; @@ -11643,7 +12080,8 @@ in with self; { petrinetR = derive2 { name="petrinetR"; version="0.2.1"; sha256="0h9nsjsj87b6qvvkg81kn0j2c4xkzq89sddp9l6pjh636bdqwf8i"; depends=[DiagrammeR dplyr purrr visNetwork xml2]; }; petro_One = derive2 { name="petro.One"; version="0.2.3"; sha256="1xky85vfk2mpj8xxdqggismzirm3rx2wr51g12zr80i1dx5wak4i"; depends=[cluster data_table dplyr ggplot2 graph magrittr RColorBrewer Rgraphviz rvest RWeka SnowballC tibble tm urltools wordcloud xml2]; }; pewdata = derive2 { name="pewdata"; version="0.3.1"; sha256="1dn6v41kwrs8dj66063y7l6vryih2q49qcfvmhaiaxzvbpzymiyc"; depends=[foreign magrittr purrr rio RSelenium stringr]; }; - pez = derive2 { name="pez"; version="1.2-0"; sha256="0rar132szi9idr99aaz3rs4r62b515pl91q0yxahg30ixnym7fjm"; depends=[ade4 animation ape apTreeshape caper FD Matrix mvtnorm phytools picante quantreg vegan]; }; + pexm = derive2 { name="pexm"; version="1.0.0"; sha256="1043pqn4irpmjv2ywqfpmp45lmx6ad2rr15cnr5sizxg9bjl1vjv"; depends=[coda msm rjags]; }; + pez = derive2 { name="pez"; version="1.2-1"; sha256="1wnnyxxg1b8ay96wfb5dfq3kbikgcmxa48pgidj8cb54mjlw8nyg"; depends=[ade4 animation ape apTreeshape caper FD Matrix mvtnorm phytools picante quantreg vegan]; }; pfa = derive2 { name="pfa"; version="1.1"; sha256="0ikdd7ps8wnjp9nm66w447m06hqxnnk553jglxikl2w5d9vk6b31"; depends=[lars POET quantreg]; }; pgam = derive2 { name="pgam"; version="0.4.15"; sha256="12llflsb32dfvxl3nbyb9bsl9bmd35g5g163hd3axzmg1bgi21ls"; depends=[]; }; pgdraw = derive2 { name="pgdraw"; version="1.1"; sha256="1s1b1izpgryrqsjkdh3yvr137054sipj3kwdkzlx2af8xjr53f85"; depends=[Rcpp]; }; @@ -11656,19 +12094,18 @@ in with self; { pgsc = derive2 { name="pgsc"; version="1.0.0"; sha256="1y4szqn1jhp3yn8q738dpbhnqcqk45vgbmczamai154w3wb0qai7"; depends=[nloptr Rcpp RcppArmadillo reshape2]; }; ph2bayes = derive2 { name="ph2bayes"; version="0.0.2"; sha256="1xm7930gycxrz308dnfnp023yidqik52sbrli35f3773mnfcid2g"; depends=[Rcpp]; }; ph2bye = derive2 { name="ph2bye"; version="0.1.4"; sha256="0h5d8d4bagkp6g0nb67cb225ki5p1amnclnfj6afgdcsli5clr67"; depends=[animation nleqslv Rcpp VGAM]; }; - ph2hetero = derive2 { name="ph2hetero"; version="1.0.2"; sha256="0aphkdb0ka8lk9q3r4ivkv4hrn7xz62rgqdbpkcwh9s455n38nyi"; depends=[clinfun mvtnorm]; }; ph2mult = derive2 { name="ph2mult"; version="0.1.1"; sha256="0w3w18fkr9xzv6mpb00cz5id33zgsnl6s8zgjpchzvrhmpjpp437"; depends=[clinfun]; }; phangorn = derive2 { name="phangorn"; version="2.5.5"; sha256="0ihkaykqjmf80d8wrk3saphxvnv58zma6pd13633bd3cwanc33f5"; depends=[ape fastmatch igraph magrittr Matrix quadprog Rcpp]; }; - phantom = derive2 { name="phantom"; version="0.1.3"; sha256="0kgw65jziw5s03isq5ywmqijhkbik5i84k30hx5gbi0zzgj8y0h1"; depends=[gplots MASS NMF qusage RColorBrewer Rcpp RcppArmadillo]; }; + pharmaRTF = derive2 { name="pharmaRTF"; version="0.1.1"; sha256="0xc9ns0kg2cxm1hq23a6ai7hlj5x1ymiijawp82szh2n275n1yxf"; depends=[assertthat huxtable purrr stringr]; }; phase1PRMD = derive2 { name="phase1PRMD"; version="1.0.2"; sha256="0gr73nsp0an0ci6l86h9fw6l791jdw0b1497qi58w25zypggdyac"; depends=[arrayhelpers coda dplyr ggplot2 gridExtra kableExtra knitr MASS plyr RColorBrewer reshape2 rjags]; }; phase1RMD = derive2 { name="phase1RMD"; version="1.0.9"; sha256="0dnyqa6jias2jqjqjpiq32jnd21ghb2shw45vdq8b5xyb8rxclwj"; depends=[arrayhelpers boot coda ggplot2 mvtnorm rjags]; }; phaseR = derive2 { name="phaseR"; version="2.1.3"; sha256="1xqh6k8zl0jc2srklb8vg57f88kssm80b286asg2cawanj06qs2k"; depends=[deSolve]; }; - phateR = derive2 { name="phateR"; version="1.0.0"; sha256="1xfbzqhly569i4ic2gv4vn4sqnyqzhgqil17z1133sx78r4yj83a"; depends=[ggplot2 Matrix reticulate]; }; + phateR = derive2 { name="phateR"; version="1.0.4"; sha256="0r2i2h2yg41g5ly9gvfyxsld3g0fwww78wffclx3ibal0v31xf45"; depends=[ggplot2 Matrix memoise reticulate]; }; phd = derive2 { name="phd"; version="0.1"; sha256="1scwan3pkhdl0nyhpjrkcal1f58x0jkdkhixdcxppr1363r1v22a"; depends=[glmnet]; }; pheatmap = derive2 { name="pheatmap"; version="1.0.12"; sha256="1hdh74az3vyzz6dqa311rhxdm74n46lyr03p862kn80p0kp9d7ap"; depends=[gtable RColorBrewer scales]; }; phenModel = derive2 { name="phenModel"; version="1.0"; sha256="07jsc8jiwgxvhv4m6nr7llm22zzh5hd3pakw5c93jzim2835zvkp"; depends=[dplyr ggplot2 reshape]; }; phenability = derive2 { name="phenability"; version="2.0"; sha256="0can8qgdpfr4h6jfg23cnwh7hhmwv6538wg2jla9w138la7rhpd1"; depends=[calibrate]; }; - phenesse = derive2 { name="phenesse"; version="0.1.1"; sha256="18jhsycs3whrxamm50pavnqmjfjs27fyp4iy61d9m7mqbkg18js2"; depends=[boot fitdistrplus]; }; + phenesse = derive2 { name="phenesse"; version="0.1.2"; sha256="1f5m8pq1n6x9ic4b0cb7j3dwfn1xfkbbpn0zr32frkiai3jmzv3j"; depends=[boot fitdistrplus]; }; phenex = derive2 { name="phenex"; version="1.4-5"; sha256="00lsymflbmlxzxz8rxcpc94pc9zmhybial9f2xkz98h6h45zgrjl"; depends=[DEoptim foreach]; }; phenmod = derive2 { name="phenmod"; version="1.2-3"; sha256="0dxwx8c7zka29fq7svrvn8bghj8jh8grbrgsw4pvavx2439cldak"; depends=[gstat lattice pheno RColorBrewer]; }; pheno = derive2 { name="pheno"; version="1.6"; sha256="0xdya1g1ap7h12c6zn3apbkxr725rjhcp4gbdchkvcnwz4y9vw8c"; depends=[nlme quantreg SparseM]; }; @@ -11678,30 +12115,31 @@ in with self; { phenofit = derive2 { name="phenofit"; version="0.2.7"; sha256="0159jn606hm9mzrfhfnjl9dab9k8118x8g6pg3y86l31mwri6skv"; depends=[data_table dplyr foreach ggplot2 gridExtra iterators jsonlite JuliaCall lubridate magrittr numDeriv optimx plyr purrr Rcpp RcppArmadillo reshape2 shiny spam stringr tibble tidyr ucminf zoo]; }; phenology = derive2 { name="phenology"; version="7.3"; sha256="0hklk5k0i6vv733dm3npphg0zrhlb14ps6j6wwvsx50sqr3xl9jg"; depends=[HelpersMG lmf numDeriv optimx]; }; phenomap = derive2 { name="phenomap"; version="1.2.1"; sha256="0kpngxqrbahild5nblfvgx2kna43hqqldx5q3b127dnqwzbhfvbb"; depends=[doParallel dplyr phenex plyr raster rgdal stringr]; }; - phenopix = derive2 { name="phenopix"; version="2.4"; sha256="0l6g4zc2wlmdizgbi3c8580ahyx59izpdas9sjbnas719hn59wvc"; depends=[bcp doParallel foreach gtools iterators jpeg plyr raster sp stringr strucchange zoo]; }; + phenopix = derive2 { name="phenopix"; version="2.4.1"; sha256="1h4yr54mg8xj31dp7p6sxj8ra55dqw4a5ksw6ka53id6vnl964lk"; depends=[bcp doParallel foreach gtools iterators jpeg plyr raster sp stringr strucchange zoo]; }; phiDelta = derive2 { name="phiDelta"; version="1.0.1"; sha256="0g1g5516p8i1gfpvsy75rdirib8sx1ki2mbf1cvgsnzh70h72gbv"; depends=[]; }; phia = derive2 { name="phia"; version="0.2-1"; sha256="0rv2akl5a488vax4sd9wnx765mch4vvcmg3iyxyljzl5kpqh5r00"; depends=[car Matrix]; }; philentropy = derive2 { name="philentropy"; version="0.4.0"; sha256="09vi6mfcig397226kq2fgymwg5ng8iysi6b2f616masscgshplxz"; depends=[dplyr KernSmooth Rcpp]; }; + phm = derive2 { name="phm"; version="0.1.2"; sha256="0jm4w2rj80jz24134y8sj6w7f2icdizs644zfbiq77vzfj1mg8i6"; depends=[data_table shiny slam tm]; }; phonR = derive2 { name="phonR"; version="1.0-7"; sha256="0al2cbynnbvmd90lk1w1g1ppslqq0ng8vbb6bl7m4kqwd2lgv056"; depends=[deldir plotrix splancs]; }; phonTools = derive2 { name="phonTools"; version="0.2-2.1"; sha256="01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"; depends=[]; }; phonenumber = derive2 { name="phonenumber"; version="0.2.2"; sha256="1m5idp538lvynmfp8m7l89js6hk5lpp26k419bdvj3hd3ap0n9lg"; depends=[]; }; - phonfieldwork = derive2 { name="phonfieldwork"; version="0.0.3"; sha256="1d7rhyzdhm17hdd7ibvkgz3js01c7wskvxlhr1c6kzbvf0mibmb6"; depends=[phonTools rmarkdown tuneR]; }; - phonics = derive2 { name="phonics"; version="1.3.2"; sha256="03iacdpzzw90jgh38mhs49gswz3292nlkizc1xr02xry6nd7357a"; depends=[BH data_table Rcpp]; }; - photobiology = derive2 { name="photobiology"; version="0.10.1"; sha256="1wg98lsixdz1qimigjxx7gwqxv36mgyb5i065gmsjf5jhd6w40jw"; depends=[dplyr lubridate plyr polynom rlang splus2R stringr tibble zoo]; }; - photobiologyFilters = derive2 { name="photobiologyFilters"; version="0.5.0"; sha256="1zijk6g9xf29ql7pybjs1zqkyn8s2zav4vz2pskj548v6hmrcw3x"; depends=[photobiology]; }; + phonfieldwork = derive2 { name="phonfieldwork"; version="0.0.7"; sha256="18279656226c3pgyz2i5jn8ibvh6m6jzkcqq3cl4ivjfldabc3h7"; depends=[phonTools rmarkdown tuneR xml2]; }; + phonics = derive2 { name="phonics"; version="1.3.6"; sha256="1vyflc7v65z4mxpzz5mxych1hhi0j6v4dy19azkwgyapvhbisdxq"; depends=[BH data_table Rcpp]; }; + photobiology = derive2 { name="photobiology"; version="0.10.4"; sha256="0vbv499g39xbcqd904226hz189favbfn5fzknp9bl2dcnnzd3fq3"; depends=[dplyr lubridate plyr polynom rlang splus2R stringr tibble zoo]; }; + photobiologyFilters = derive2 { name="photobiologyFilters"; version="0.5.1"; sha256="02xknpq8bv55zp7njd7pdi9gg1gmd4l6j6jlxi94a8nwpnfm2cxv"; depends=[photobiology]; }; photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.22-1"; sha256="1dqjlcra3vqydxjf6rwha6y1bykkpqwf8bqjkljs4kb89642qbv1"; depends=[colorSpec dplyr lazyeval lubridate photobiology readr readxl stringr tibble tidyr]; }; photobiologyLEDs = derive2 { name="photobiologyLEDs"; version="0.4.3-1"; sha256="0inhl6ba1fzkak4752m60hkm6fzapzyz5kchvz18yv33dmm13v1c"; depends=[photobiology]; }; photobiologyLamps = derive2 { name="photobiologyLamps"; version="0.4.3"; sha256="1df7ngcyrmvhab80w1ggyv1p9srsvwr9f6pm8yl7hvkpkv6jbdsk"; depends=[photobiology]; }; photobiologyPlants = derive2 { name="photobiologyPlants"; version="0.4.2"; sha256="0ab5ks72mb5x03xc0ww9fcl0h13ja8402b1s670lqmmhyvp6fj3s"; depends=[photobiology photobiologyWavebands]; }; photobiologySensors = derive2 { name="photobiologySensors"; version="0.4.0"; sha256="1d0rphlx6k2hqvmhndbw143djsfr4fmwjih3s37bhksc2dn7nh2v"; depends=[photobiology]; }; photobiologySun = derive2 { name="photobiologySun"; version="0.4.1"; sha256="15wp8q29m5c4qplind9098ikxmm1r60lw8cm0pa48lmh33638ia3"; depends=[photobiology]; }; - photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.4.3"; sha256="04nc3yhd97k2pb1jv2bgda8mii4y4ph1884wagw8y3lc0g4dkicv"; depends=[photobiology]; }; - photosynthesis = derive2 { name="photosynthesis"; version="1.0.0"; sha256="089b42s4277j6pmxa3jsg0bcrilqanp7dblnz6hlmgprqcbmlhwb"; depends=[crayon dplyr furrr future glue gunit magrittr purrr rlang stringr tealeaves tidyr tidyselect units]; }; - phreeqc = derive2 { name="phreeqc"; version="3.6.0"; sha256="17dv4c94y7z5yaqx1g8llbmwpg15pkkixkhmi5knyyvi2fd23vkl"; depends=[]; }; + photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.4.4"; sha256="04bl72jaxm7vfvzss3wxjqf7p4l6rrqv11a7gqyfg0xqy18clnhx"; depends=[photobiology]; }; + photosynthesis = derive2 { name="photosynthesis"; version="1.0.2"; sha256="0804a91fv99qmsjj8km65cqqvk807mscd915aafchr27xwirfh9b"; depends=[checkmate crayon dplyr furrr future glue gunit magrittr purrr rlang stringr tealeaves tidyselect units]; }; + phreeqc = derive2 { name="phreeqc"; version="3.6.3"; sha256="0z20gj1kqhnbvx33sswz5ivj7nk2p4hia4gr2npscs94nc50b5j4"; depends=[]; }; phuassess = derive2 { name="phuassess"; version="1.1"; sha256="0jplj9gih32dllx2hw5aqvc9b94sbrbv66s3a5r8mdbpjh93rhng"; depends=[]; }; phuse = derive2 { name="phuse"; version="0.2.2"; sha256="0aihiz0gkvs7bq9f9fmfxsv7wk5yifcnmgnjl3y9qf2dzl5787bb"; depends=[git2r httr jsonlite RCurl rlist SASxport shiny stringr yaml]; }; phybreak = derive2 { name="phybreak"; version="0.2.0"; sha256="0vapc0w308wv1cd72p2xbj3q7jfnxwp08g5g8855a38pcn3njbfg"; depends=[ape phangorn Rcpp stringr]; }; - phyclust = derive2 { name="phyclust"; version="0.1-28"; sha256="0y6f4d4mnpgk841knbhaf73khbakjphim9x4sqrczgsrsjas596f"; depends=[ape]; }; + phyclust = derive2 { name="phyclust"; version="0.1-29"; sha256="0jy2ylz6znsn5fsxrlv7fasmbfw3drbvvf68vd1cf5hz50p7i543"; depends=[ape]; }; phyext2 = derive2 { name="phyext2"; version="0.0.4"; sha256="0j871kgqm9fll0vdgh071z77ib51y8pxxm0ssjszljvvpx1mb8rb"; depends=[ape phylobase]; }; phylin = derive2 { name="phylin"; version="2.0.2"; sha256="0v6fyk2prja448vdi7ipwzws28fjfi188pfncjf9mhn8jrgpfxl6"; depends=[]; }; phyloTop = derive2 { name="phyloTop"; version="2.1.1"; sha256="1n44kr3a9yg8yvy3m493zi04x6aiqm424fp2ls9yzyx1cga2h9nk"; depends=[ape igraph NHPoisson phylobase]; }; @@ -11709,13 +12147,12 @@ in with self; { phylocanvas = derive2 { name="phylocanvas"; version="0.1.3"; sha256="1l5br500lwwf7vp8wph5ykpkpqd15lypvhzy0c1cc8g8c6f7pckn"; depends=[ape htmlwidgets phylobase]; }; phyloclim = derive2 { name="phyloclim"; version="0.9.5"; sha256="107kilh0gwr84ig54g92zyk7zv553pky2bzpjqgf9fjwbm6fvmrs"; depends=[ape raster sp]; }; phylocomr = derive2 { name="phylocomr"; version="0.3.2"; sha256="1qdhf6a7cqp12i4macy5wcbk6mf01fqbm4rc11yl63qr72zwrbhy"; depends=[sys tibble]; }; - phylocurve = derive2 { name="phylocurve"; version="2.0.10"; sha256="1027r5dgp2a8cci2269fbjkhx9k6lifxljkpp54yv7nynfj5izgp"; depends=[ape doParallel drc dtw foreach geiger geomorph GPfit Matrix mvnmle phylolm phytools Rcpp RcppArmadillo rgl]; }; phylogram = derive2 { name="phylogram"; version="2.1.0"; sha256="1p4h5pirc0m5pzc18q0jk3mcmb5n48gdf9abz03vml3a209xxl2v"; depends=[ape]; }; phyloland = derive2 { name="phyloland"; version="1.3"; sha256="10g40m6n2s4qvnzlqcwpy3k0j7bxdp79f586jj910b8p00ymrksp"; depends=[ape]; }; - phylolm = derive2 { name="phylolm"; version="2.6"; sha256="0vah8ibicldi57wab4sk1kx7gdq6h34bm6swmxzhq7kikxfwmmyj"; depends=[ape future_apply]; }; + phylolm = derive2 { name="phylolm"; version="2.6.2"; sha256="04pz7i44s8w6py4nk2zilzjlkrf1c5dbb6jij7zfkk49hvslbynn"; depends=[ape future_apply]; }; phylometrics = derive2 { name="phylometrics"; version="0.0.1"; sha256="1pmr6l3wmaf91wdlsc5m63l07fibngnly2qzkma0rdi463ii03il"; depends=[mvtnorm]; }; phylopath = derive2 { name="phylopath"; version="1.1.2"; sha256="15fs845ay7nbhaxwapc2b33f134nqj1m365l44iyikdm4cacmdx0"; depends=[ape ggm ggplot2 ggraph igraph MuMIn pbapply phylolm purrr tibble]; }; - phyloregion = derive2 { name="phyloregion"; version="1.0.2"; sha256="1zqra1d9r2djwbd04p9wiadvms81hvg1idpji9yq11im10c47pcb"; depends=[ape betapart cluster colorspace data_table fastmatch igraph Matrix phangorn raster rgeos sp vegan]; }; + phyloregion = derive2 { name="phyloregion"; version="1.0.4"; sha256="1l28hnnxymq1hskdhhjkhd5hiaf8j9ip82nsz5gm7rgrdhzw54yg"; depends=[ape betapart colorspace igraph Matrix phangorn raster rgdal rgeos sp vegan]; }; phyloseqGraphTest = derive2 { name="phyloseqGraphTest"; version="0.1.0"; sha256="0y1hxj68dcic4i7ihnw9hgf28qp6s6kpq4c08dy7gv19gq7sllgd"; depends=[ggnetwork ggplot2 igraph intergraph phyloseq]; }; phylosignal = derive2 { name="phylosignal"; version="1.3"; sha256="1h73wwczwak5v89mybq16lmmfr0fxfv5mx347ffipy6q9vgvwqx5"; depends=[adephylo ape boot DBI igraph phylobase Rcpp RcppArmadillo]; }; phylotate = derive2 { name="phylotate"; version="1.3"; sha256="092kvn32j06vm8ilwjkgidcz11r3qhsmi0cb0g0nnykw0a0vii4p"; depends=[]; }; @@ -11723,26 +12160,27 @@ in with self; { phyr = derive2 { name="phyr"; version="1.0.2"; sha256="1qk4mbchi5dcz6vsmwb93gj5ihp2ygvm1ya63mkw11vkyy2nv67c"; depends=[ape dplyr gridExtra latticeExtra lme4 Matrix mvtnorm nloptr Rcpp RcppArmadillo]; }; phyreg = derive2 { name="phyreg"; version="1.0.2"; sha256="0m1psq79zl7h8791pl8g6i0ybda7vgddza8r9mwqhg4sw1q4bzcp"; depends=[]; }; physiology = derive2 { name="physiology"; version="1.2.1"; sha256="1z7xymwgj7bqn0yvcz3q8pvwhpr5vx5qd0x8sayal1vgpqc0nccb"; depends=[Rcpp]; }; - phytools = derive2 { name="phytools"; version="0.7-20"; sha256="12fs20w7f921kn6qj397l2n9q9q6ri6hqpikmhbssah58a973isy"; depends=[animation ape clusterGeneration coda combinat expm gtools maps MASS mnormt nlme numDeriv phangorn plotrix scatterplot3d]; }; + phytools = derive2 { name="phytools"; version="0.7-47"; sha256="18scm5p9g4ivkg108r21lxhaailc3h91nblxrfwjfah88bqb1cgy"; depends=[animation ape clusterGeneration coda combinat expm gtools maps MASS mnormt nlme numDeriv phangorn plotrix scatterplot3d]; }; phytotools = derive2 { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; }; - picante = derive2 { name="picante"; version="1.8.1"; sha256="1b16zm8zjjsl181b8krkdcrbcw347kf772c4w7y5332qmfi7jhz0"; depends=[ape nlme vegan]; }; + piRF = derive2 { name="piRF"; version="0.1.0"; sha256="04k09ylc6hqw57dlv7sfnisn1167dr550y1j9xl7prvlf3jksg06"; depends=[Rdpack]; }; + picante = derive2 { name="picante"; version="1.8.2"; sha256="19savjzj44b7ifdxcp02ynj22z4n4ikq2aipc74ljzy3yykmqmjn"; depends=[ape nlme vegan]; }; picasso = derive2 { name="picasso"; version="1.3.1"; sha256="1z7zm88wjp7fia7054l7i55f152iddrjj9wbcpcskhc8s6kfg53c"; depends=[MASS Matrix]; }; pid = derive2 { name="pid"; version="0.50"; sha256="05s3xqf95d4avh7gkr49jsm8jzacbv694c3wgppkkc40zip6vkc7"; depends=[DoE_base FrF2 FrF2_catlg128 ggplot2 png]; }; - piecepackr = derive2 { name="piecepackr"; version="1.2.1"; sha256="1mh3b862pyxl9zkxmvcflnn4b0nx27s8fj3srs5ph2gwhh7l3zcy"; depends=[grImport2 jpeg png purrr R6 stringr tibble]; }; + piecepackr = derive2 { name="piecepackr"; version="1.5.1"; sha256="03dk1y195q0qzg9apkx1nvaj2db0cd6drqlm9y41z2vhhjnxijav"; depends=[gridGeometry grImport2 jpeg png purrr R6 stringr tibble]; }; piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.1.0"; sha256="1dpl3kyph0ry9g9321cknznjdizh03klg0s6hx56g6h8ygb0ar6h"; depends=[car DiagrammeR emmeans igraph lme4 MASS nlme]; }; piggyback = derive2 { name="piggyback"; version="0.0.11"; sha256="17cmkzp4g5gcapab3g5jxpabsmw4s3zsizqd99bh36xyw76v1jds"; depends=[clisymbols crayon fs gh git2r httr jsonlite lubridate magrittr memoise usethis]; }; - pillar = derive2 { name="pillar"; version="1.4.3"; sha256="02sn7zw80wq33jgxk2i6m5jb83sk7y72dfhgyy0apfinv05w92ss"; depends=[cli crayon fansi rlang utf8 vctrs]; }; + pillar = derive2 { name="pillar"; version="1.4.6"; sha256="01ck8ziqzjc9ibbj3g88siz1iw263dgl8jx6ryw2v50rjrr3y7fj"; depends=[cli crayon ellipsis fansi lifecycle rlang utf8 vctrs]; }; pim = derive2 { name="pim"; version="2.0.2"; sha256="0kwlm6n23ccs0jz4plsqprg6inj3qv74zhvg9gpxyj3ksvdxp58i"; depends=[BB nleqslv]; }; pimeta = derive2 { name="pimeta"; version="1.1.3"; sha256="1mx0m438db4n041bns6sm8sr8vrj6w8b2kvpmrkkp0bly2vpv40q"; depends=[ggplot2 Rcpp RcppEigen scales]; }; pinbasic = derive2 { name="pinbasic"; version="1.2.2"; sha256="0mcw68wrixz2jf62nfifdgg8bnp4h1p3byivz28wi61blj8iaa75"; depends=[fastcluster ggplot2 lubridate Rcpp reshape2 scales]; }; - pinfsc50 = derive2 { name="pinfsc50"; version="1.1.0"; sha256="1fja8xdqwsm4g223wmb2yg5fqmsg94hchzjd4qrqah1zb8vbdfdn"; depends=[]; }; + pinfsc50 = derive2 { name="pinfsc50"; version="1.2.0"; sha256="1547xyxmfb7zi8h9bsm6k67dcw4hpp129xzvmgwfw7r6p4af47zd"; depends=[]; }; pingers = derive2 { name="pingers"; version="0.1.1"; sha256="09np6aph6rhvdh6mwky8a57i38bi2amwi7x91p9kfb2mzkql8k8w"; depends=[data_table dplyr lubridate plotly reshape2 stringr tibble tictoc tidyselect]; }; - pingr = derive2 { name="pingr"; version="2.0.0"; sha256="0fyzm8hlksqyzp1mrb5b10qprnqd9jhk8lsdyb4j4h4ap94wwzb7"; depends=[processx]; }; + pingr = derive2 { name="pingr"; version="2.0.1"; sha256="08bjbzr5vvzf48b0k8vr3ads13f1zxvmfc0djpzxd7p90pkm75nl"; depends=[processx]; }; pinnacle_API = derive2 { name="pinnacle.API"; version="2.3.3"; sha256="1b6adns1xr3cgcj2mdjvl16cm2vjjgsj2l8m2c47plyc5jh05qmb"; depends=[data_table httr jsonlite magrittr openssl purrr rjson uuid]; }; pinnacle_data = derive2 { name="pinnacle.data"; version="0.1.4"; sha256="1sl36i2857b3xwx7iwgy8mkgjvz7nfa74ch1n8kcxbj59ib7mp8p"; depends=[tibble]; }; pinochet = derive2 { name="pinochet"; version="0.1.0"; sha256="0qy18mlw34cv9p7b3qb5bidxyq44k0hzj91hm5vp6wkjhik4knvi"; depends=[]; }; pinp = derive2 { name="pinp"; version="0.0.9"; sha256="1hdj0mqwz0hwl6jsh5zknbgg10bj49giqnr4y3lavfbk8d7qmmvs"; depends=[knitr rmarkdown]; }; - pins = derive2 { name="pins"; version="0.4.0"; sha256="1dg4553hjfy948nq3y7fx90ybdxnlwkfjv7zjfrf128zdwpvnb7x"; depends=[backports base64enc crayon digest filelock httr jsonlite magrittr mime openssl rappdirs withr yaml zip]; }; + pins = derive2 { name="pins"; version="0.4.3"; sha256="0bzfj7nxc7ll43ws2r3f7fm55pjn9nf7nmx7w40kvn9h5cafsays"; depends=[backports base64enc crayon digest filelock httr jsonlite magrittr mime openssl rappdirs withr yaml zip]; }; pinyin = derive2 { name="pinyin"; version="1.1.6"; sha256="0rw9qd5hbcmpi30vdqs31ijy37d8jlpqv0xif2nndb8cwj8x5bw2"; depends=[data_table splitstackshape]; }; pipe_design = derive2 { name="pipe.design"; version="0.5.1"; sha256="0r0szkdzifxmnnbr6675w8ij4zwqgxj3gwahc7a74mxr51f7qh8j"; depends=[ggplot2 gtools xtable]; }; pipeGS = derive2 { name="pipeGS"; version="0.4"; sha256="0ki4i70r5f195b4jfv3hxlxz3zj57mhy2yf4984bwr11impilz5w"; depends=[]; }; @@ -11751,73 +12189,75 @@ in with self; { pipeliner = derive2 { name="pipeliner"; version="0.1.1"; sha256="1cyyd1bin89dh0zrhic3i541bj8nnaphg6jq2jqkhnxn2nvax11g"; depends=[]; }; pirate = derive2 { name="pirate"; version="1.0.0"; sha256="160mmyqdwbc4g7n7q9i4xcqp6h9bcpcz7vavsgdcpvs2mjfhfpjx"; depends=[ggplot2 MASS plyr Rcpp RcppArmadillo]; }; piratings = derive2 { name="piratings"; version="0.1.9"; sha256="0krrcf2bwicdf9fn657vkcjg5zliwi82hw3xmaqi46mdix8896gh"; depends=[ggplot2]; }; + pisaRT = derive2 { name="pisaRT"; version="1.0.0"; sha256="02r9xgh57scc6j9cp8aaw3c3r8cpr91xvcmkzkag5i4nxjzq9lbd"; depends=[]; }; pitchRx = derive2 { name="pitchRx"; version="1.8.2"; sha256="0lg0xab40r8wzrww986l5q9jkg1m83g4bhsbh0kr7f2rv90av662"; depends=[ggplot2 hexbin MASS mgcv plyr XML2R]; }; piton = derive2 { name="piton"; version="0.1.1"; sha256="1265y4lv2m5nwrh25sahjkxwmivpxgh9shrdidlmaman7zs6cclr"; depends=[Rcpp]; }; - pivmet = derive2 { name="pivmet"; version="0.2.0"; sha256="0xcm0pb5qn2vikhnf7fnp6942syq0xax7fgwmspixa6la5bdkksg"; depends=[bayesmix cluster corpcor MASS mclust mvtnorm RcmdrMisc rjags rstan runjags]; }; + pivmet = derive2 { name="pivmet"; version="0.3.0"; sha256="04awr5sj3x79hwzqd4hv43gfy7w6lpl2hbbny72vvjwc6g0z574p"; depends=[bayesmix bayesplot cluster corpcor MASS mclust mvtnorm RcmdrMisc rjags rstan runjags]; }; pivotaltrackR = derive2 { name="pivotaltrackR"; version="0.1.0"; sha256="024srncm288mn3bz6hv7ljzkchmnljk4yc2d4z7i05vsn7dzd2c6"; depends=[curl httr]; }; - pivottabler = derive2 { name="pivottabler"; version="1.3.1"; sha256="0c82jd07g5fh9c36izc1brkz0rc7lryp5r1d50cvhlaap7dys588"; depends=[data_table dplyr htmltools htmlwidgets jsonlite R6]; }; + pivottabler = derive2 { name="pivottabler"; version="1.5.0"; sha256="0b3zh7qwvwvy0d2svnvpdbqwc8w2mb1s9g3acf883dhy3cnxq4ly"; depends=[data_table dplyr htmltools htmlwidgets R6]; }; pixels = derive2 { name="pixels"; version="0.1.0"; sha256="0lna0z2shs49kh48ipjnyigaa22wb9gm4mq970ldhh9msb7wcv55"; depends=[htmlwidgets miniUI shiny]; }; - pixiedust = derive2 { name="pixiedust"; version="0.8.6"; sha256="1dajiblpm51szndz026lmwh6swx8f9f03s6md26d84awcx0q1dpc"; depends=[broom checkmate dplyr htmltools knitr labelVector magrittr scales tidyr]; }; + pixiedust = derive2 { name="pixiedust"; version="0.9.0"; sha256="01qcd8rsph3i65p9w4asqb1x6a671vbihzsby19ravp22lqzfmxg"; depends=[broom checkmate htmltools knitr labelVector magrittr reshape2 scales]; }; pixmap = derive2 { name="pixmap"; version="0.4-11"; sha256="04klxp6jndw1bp6z40v20fbmdmdpfca2g0czmmmgbkark9s1183g"; depends=[]; }; pkgKitten = derive2 { name="pkgKitten"; version="0.1.5"; sha256="0nnib0gv9g22b9p01xigsgj04jv29fv7f444invfphfh9cc866m4"; depends=[]; }; - pkgbuild = derive2 { name="pkgbuild"; version="1.0.6"; sha256="0xnlz6ivhkbmncg9hfw5p69lm4rjy3wn5lyxmygxyf4rrfnnqwxx"; depends=[callr cli crayon desc prettyunits R6 rprojroot withr]; }; - pkgcache = derive2 { name="pkgcache"; version="1.0.7"; sha256="1abjswh5jkx60vssrsfgznl2l97rys00icwrxp1pm6i99aqsiscp"; depends=[assertthat callr cli curl digest filelock glue prettyunits processx R6 rappdirs rlang tibble uuid]; }; + pkgbuild = derive2 { name="pkgbuild"; version="1.1.0"; sha256="1gdbrjq4kiwm45c6pb23mp327qyjvslhyf72ca4zhlzwc5vgp6xk"; depends=[callr cli crayon desc prettyunits R6 rprojroot withr]; }; + pkgcache = derive2 { name="pkgcache"; version="1.1.0"; sha256="1fqrb2bfx4l3vwkvrfbadzamiknn62cyn8bj8q8np83klc926fkb"; depends=[assertthat callr cli curl digest filelock glue prettyunits processx R6 rappdirs rlang tibble uuid]; }; pkgcond = derive2 { name="pkgcond"; version="0.1.0"; sha256="0pxj798042g23cf19r67nbgdyhpd868n2pkqjvjgrgr8ivwnkf1h"; depends=[]; }; pkgconfig = derive2 { name="pkgconfig"; version="2.0.3"; sha256="0l1qph8zyi2sic3k2qcd7vlfl7rzfh1q7z7zvjkl5f7y1x2fy3rk"; depends=[]; }; pkgdown = derive2 { name="pkgdown"; version="1.5.1"; sha256="0sy7f4bzbdzh2z8m30hq2i5yx9vrpmridrg4l85qpvwm5j7yhd88"; depends=[callr cli crayon desc digest evaluate fansi fs highlight httr magrittr MASS memoise openssl processx purrr rematch2 rlang rmarkdown rstudioapi tibble whisker withr xml2 yaml]; }; pkgfilecache = derive2 { name="pkgfilecache"; version="0.1.2"; sha256="07x63w19fg7sl547501r2dx2ds5sfdfb29xvqrvjibf8265x25fw"; depends=[downloader rappdirs]; }; pkggraph = derive2 { name="pkggraph"; version="0.2.3"; sha256="1isiywgm20rypc5qr03p0k7lis76zzd96x5ncbvia644d2n13brm"; depends=[curl data_table dplyr ggnetwork ggplot2 htmltools igraph intergraph Matrix network networkD3 plyr RColorBrewer tibble]; }; - pkgload = derive2 { name="pkgload"; version="1.0.2"; sha256="0z7jvharafahi2gv5547mk1n499isjzw06kfwymmxc0gd575d1ii"; depends=[desc pkgbuild rlang rprojroot rstudioapi withr]; }; + pkgload = derive2 { name="pkgload"; version="1.1.0"; sha256="03bv8xq4s6s7m34y1kjs99jzlb95vwrfi76mbnhmzcx2pc6ld78q"; depends=[cli crayon desc pkgbuild rlang rprojroot rstudioapi withr]; }; pkgmaker = derive2 { name="pkgmaker"; version="0.31.1"; sha256="0r0ga20dy25v9y5gjbds4y6kaa5a7qknh503qdkzllcpzbibh0hp"; depends=[assertthat bibtex codetools digest magrittr registry stringi stringr withr xtable]; }; + pkgndep = derive2 { name="pkgndep"; version="1.0.0"; sha256="0icqvka2yssz9ri9yncb725fm8vfcaf602bqz8l25mgk2hh6zamf"; depends=[callr ComplexHeatmap crayon GetoptLong]; }; pkgnet = derive2 { name="pkgnet"; version="0.4.1"; sha256="194ynbhq6k7gp8l4ccq6m37qhhf791ynbppjh77cc0q50w2jz387"; depends=[assertthat covr data_table DT futile_logger glue igraph knitr magrittr R6 rlang rmarkdown visNetwork]; }; pkgsearch = derive2 { name="pkgsearch"; version="3.0.2"; sha256="1dvlqav7hp43x30rmwr8h3dscc0hc01i6mfc7hxvf7ny1rzckfv0"; depends=[assertthat httr jsonlite parsedate prettyunits tibble]; }; pkgverse = derive2 { name="pkgverse"; version="0.0.1"; sha256="0lsv7s9vsjvfpy19nxbdlbm363j01wwqqnrp0nlrik590hfq4w83"; depends=[devtools usethis]; }; pkmon = derive2 { name="pkmon"; version="1.0"; sha256="0j2v4zlf7vgy5gld29xiii15m9i85cpiwc25rmzjm02cz2p32c72"; depends=[]; }; pkr = derive2 { name="pkr"; version="0.1.2"; sha256="0m045dlcq3rls1w0smy4jvk3c57ckpqdv8xnz261k1gnnyjmz1k2"; depends=[binr foreign forestplot rtf]; }; pks = derive2 { name="pks"; version="0.4-1"; sha256="1lwm65s2b9y6vr1yr683n535yz8hbzc6j289a6yp45v2yai72m07"; depends=[sets]; }; - pksensi = derive2 { name="pksensi"; version="1.1.5"; sha256="108qm4y1ss1pd6nhckwmg8b45hc3pg0xn5ch8q2xzi1h9imm7hz3"; depends=[data_table deSolve dplyr getPass ggplot2 magrittr reshape]; }; + pksensi = derive2 { name="pksensi"; version="1.2.0"; sha256="0dfvgwsq0mdf90m605y7q4bl1f4zp5i15897wvwdvfin9l5m87v2"; depends=[data_table deSolve doParallel dplyr foreach getPass ggplot2 magrittr reshape]; }; plRasch = derive2 { name="plRasch"; version="1.0"; sha256="1rnpvxw6pzl5f6zp4xl2wfndgvqz5l3kiv9sh4cpvhga0gl8zjaw"; depends=[survival]; }; plac = derive2 { name="plac"; version="0.1.1"; sha256="08kqnjzbfygnbqvqg5wyw148kfhjqxy46y4vaiq9zzwzj58w8vzn"; depends=[Rcpp RcppEigen survival]; }; placer = derive2 { name="placer"; version="0.1.3"; sha256="0d7b6mkyyrcjn1pqxlj9mjis6vzks986i7vhc8ffkp8hz8sc7271"; depends=[]; }; - plainview = derive2 { name="plainview"; version="0.1.0"; sha256="0yvw357p1hwrlj4c2sjr4klmy6j98a3kbdfwg0snaiv0drdyhznk"; depends=[gdalUtils htmltools htmlwidgets lattice png raster viridisLite]; }; + plainview = derive2 { name="plainview"; version="0.1.1"; sha256="095y0cjp7g0h1kdbiwh1k2mj0ap8vm54nx8mf84ckamzc1jnmlfk"; depends=[gdalUtils htmltools htmlwidgets lattice png raster viridisLite]; }; plan = derive2 { name="plan"; version="0.4-3"; sha256="0j3mvcy97r7adcs7q6z0w9ng74jcfwii1xp8kcl2cwbzs2fd425r"; depends=[]; }; planar = derive2 { name="planar"; version="1.6"; sha256="0x5xdb2afpc1w8s217hy765mz938kg5b5j7vzqzhlsh2dzdjccpj"; depends=[cubature dielectric ggplot2 plyr Rcpp RcppArmadillo reshape2 statmod]; }; planets = derive2 { name="planets"; version="0.1.0"; sha256="01zh7lgaykr9p186yy0vksn2pmc69b3xxh78w7z6wclvqjb7zh1p"; depends=[]; }; - planor = derive2 { name="planor"; version="1.5-3"; sha256="0klnl8c5h1db8dl9jn159f4ypa8sga0yqdhlh1x8gdkbx7amzrzj"; depends=[bit64 conf_design Rcpp RcppArmadillo]; }; plantecophys = derive2 { name="plantecophys"; version="1.4-4"; sha256="005js9r7xg4jf2aqgsqddkkxhcdnhsiyzc1cqa7j59r4g5xbmh1j"; depends=[]; }; plantecowrap = derive2 { name="plantecowrap"; version="1.0.4"; sha256="0syxf63xy5whzw03ys5cxyw7689mr7ihgmqddv53jb8rlbwm84p8"; depends=[ggplot2 minpack_lm plantecophys tidyr]; }; plaqr = derive2 { name="plaqr"; version="2.0"; sha256="15pdb57123m3cahvcsyrrvxjwxvs2f389yxip91gjxn68jf6cx1l"; depends=[quantreg]; }; plater = derive2 { name="plater"; version="1.0.2"; sha256="0z3s33xpfkd1ln37bpsgycbb35hgjq23yi151imdxyv80493vy4w"; depends=[dplyr]; }; - platetools = derive2 { name="platetools"; version="0.1.2"; sha256="026i0xxci33r1c4zrjwjpw1wqdnj44nryqzzapa367160p9f2v5y"; depends=[ggplot2 RColorBrewer]; }; + platetools = derive2 { name="platetools"; version="0.1.3"; sha256="1c0bxgfa31sgb6mg8nnqx6pp18262walar1lxcg2dpjhzqlgzn0c"; depends=[ggplot2 RColorBrewer]; }; plde = derive2 { name="plde"; version="0.1.2"; sha256="1g1b1sgyfxgfkjcr3sdkan8jd6r7yyi0izc83vyj11bdk08jx22h"; depends=[]; }; pleiades = derive2 { name="pleiades"; version="0.2.0"; sha256="1h3q4yf0w0al7n8l7ca4vgx2bhrrz8clli15svlds7n402s8rzp5"; depends=[crul DBI dbplyr dplyr gistr jsonlite rappdirs RSQLite]; }; pleio = derive2 { name="pleio"; version="1.6"; sha256="0av1sl0fdn2ia7ddalbvidhcnsvs36iq618s1bknjw29y5yyq020"; depends=[Matrix rms]; }; - plfMA = derive2 { name="plfMA"; version="1.0.4"; sha256="0q6wiiknmgw812kcf9qq309zlizyry7ldn6m08lkw6xq6i4f4s85"; depends=[cairoDevice gWidgets gWidgetsRGtk2 limma RGtk2]; }; + plethem = derive2 { name="plethem"; version="1.0.1"; sha256="14yphprg34szwhwg7ksh1zmyskrcx8qqd4ycqxl4fy6l8cr3y0fg"; depends=[data_table deSolve devtools doParallel dplyr DT foreach formatR gdata ggplot2 httk magrittr miniUI NonCompart plotly pracma readxl reshape2 rhandsontable RSQLite rstudioapi shiny shinyBS shinybusy shinydashboard shinyjs shinythemes shinyWidgets sqldf stringr truncdist V8]; }; plfm = derive2 { name="plfm"; version="2.2.2"; sha256="1jgf3jrkdpsf77i4lf68s6sxax95c9is4nryhnzanq9i5f23j24v"; depends=[abind sfsmisc]; }; plgp = derive2 { name="plgp"; version="1.1-7"; sha256="02g6saabrsd8pra0szbwcbilf6w5ywg2gxqb5zdvbxds2vw36hn0"; depends=[mvtnorm tgp]; }; plink = derive2 { name="plink"; version="1.5-1"; sha256="0rn2i9i8af9aq0xgxhpcdchs2952lq2d2sg8x3js0zi3vcml76k0"; depends=[lattice MASS statmod]; }; plinkFile = derive2 { name="plinkFile"; version="0.1.0"; sha256="0803hp822v9rqh4h437q2nmab19yamc4dbyi6iimm67ykp0d5xss"; depends=[]; }; - plinkQC = derive2 { name="plinkQC"; version="0.3.0"; sha256="1s458cg4y1zisjk3var3fnm1q54hfbl228i9qdxgzkkrhzc9mghw"; depends=[cowplot data_table dplyr ggforce ggplot2 ggrepel igraph optparse R_utils sys UpSetR]; }; + plinkQC = derive2 { name="plinkQC"; version="0.3.2"; sha256="1dmx2r5d77nhma5xdy4i7jj2hjqhaz0hxj5ym70v0ac907vpy9zb"; depends=[cowplot data_table dplyr ggforce ggplot2 ggrepel igraph optparse R_utils sys UpSetR]; }; plm = derive2 { name="plm"; version="2.2-3"; sha256="10bwd5xpim12038bxs8bmlaf33smlqy5f0cn7p3j6ipfygdwryld"; depends=[bdsmatrix Formula lattice lmtest MASS maxLik nlme Rdpack sandwich zoo]; }; plmm = derive2 { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[Formula nlme sm]; }; - pln = derive2 { name="pln"; version="0.2-1"; sha256="09zg7zwmmqpjr1j59lqsjf4blrkya9wfwddgzfm9rr5jxrzvqcv8"; depends=[]; }; + pln = derive2 { name="pln"; version="0.2-2"; sha256="03jjmfr1dwz6p652y917g9rv2alyam9ws6xh9ig02d3w78b0rsv9"; depends=[]; }; plogr = derive2 { name="plogr"; version="0.2.0"; sha256="0a8dhzlna79ggyhfr0nncgh15a9n6r0dsz664pz0ah323wpblqqf"; depends=[]; }; plot_matrix = derive2 { name="plot.matrix"; version="1.4"; sha256="0szrh83fc7x9kcz9caj3pwqrgrlq718v28j63j2mi2bvxbc8406l"; depends=[]; }; plot3D = derive2 { name="plot3D"; version="1.3"; sha256="1jfzndnlci9a975qbcv66jiy2l46hs3f2049654x4jp3i4kyrr5r"; depends=[misc3d]; }; plot3Drgl = derive2 { name="plot3Drgl"; version="1.0.1"; sha256="12p4qc9vmhr86ssx6xnz3cmx84q5jgd28bw9dp4wjrn04n6l4va6"; depends=[plot3D rgl]; }; - plot3logit = derive2 { name="plot3logit"; version="1.0.2"; sha256="0pgqlq8rpkrv277d1mfy2z22mkykc5zmhvkg07wsz3hdxr0ifx80"; depends=[ellipse ggplot2 ggtern magrittr reshape2 Ternary]; }; - plotGMM = derive2 { name="plotGMM"; version="0.2.1"; sha256="1gp99gvb886kcwjk9yvfd7s6mgy3jf3x0zhpaj9zp0fky12ivz7b"; depends=[amerika ggplot2 wesanderson]; }; + plot3logit = derive2 { name="plot3logit"; version="2.2.0"; sha256="079pandh3kcw2fp5ih1rmksfs64aznw080s86ida8l4jfb0rvb6l"; depends=[dplyr ellipse forcats generics ggplot2 ggtern lifecycle magrittr purrr Rdpack Ternary tibble tidyr tidyselect]; }; + plotGMM = derive2 { name="plotGMM"; version="0.2.2"; sha256="1cgjajw3dprdlq9ri0gllbxcy33x311mbp9xdds8fgq6cs42ggyb"; depends=[amerika ggplot2 wesanderson]; }; plotKML = derive2 { name="plotKML"; version="0.6-1"; sha256="1k5bfajgzcj912ja8s3ashsvfqz0sx10746x4ggyknyp17qrlbzw"; depends=[aqp classInt colorRamps colorspace dismo gstat pixmap plotrix plyr raster RColorBrewer rgdal RSAGA scales sp spacetime stringr XML zoo]; }; plotMCMC = derive2 { name="plotMCMC"; version="2.0-0"; sha256="0i4kcx6cpqjd6i16w3i8s34siw44qigca2jbk98b9ligbi65qnqb"; depends=[coda gplots lattice]; }; plotMElm = derive2 { name="plotMElm"; version="0.1.5"; sha256="0wwqzrpkmq9gzazdzlk62qig6vz43niada6fxh1wcsjqjwkcccgp"; depends=[ggplot2 interactionTest]; }; plotROC = derive2 { name="plotROC"; version="2.2.1"; sha256="0bk8j2lp80zcz4kkig1y5a1ig8vbjh7b4inzc46bn07ns1rdjgzg"; depends=[ggplot2 gridSVG plyr rlang shiny]; }; plotSEMM = derive2 { name="plotSEMM"; version="2.4"; sha256="0fircrayhz92zvkigkyb1zpn07bvssqs1ip15p926zj3rl77fqgy"; depends=[MplusAutomation plotrix plyr Rcpp shiny]; }; plotdap = derive2 { name="plotdap"; version="0.0.7"; sha256="1zwf4s2myw20klbc0jnfrbg0hll9528m8vcxnc419nsgm3m2nskb"; depends=[cmocean dplyr gganimate ggnewscale ggplot2 lazyeval lubridate magrittr maps raster rerddap rgeos scales sf tidyr viridis]; }; - plotfunctions = derive2 { name="plotfunctions"; version="1.3"; sha256="0cnmwkfjg45187j490sf01gxijhajrpi6j13hfckli2ysn6xrgz3"; depends=[]; }; - plothelper = derive2 { name="plothelper"; version="0.1.8"; sha256="0g8dnhr1v0k6m1ws35f3mj99fc32i51jxryg1iy5p852g500qqkr"; depends=[farver ggfittext ggplot2 gridExtra magick plyr scales]; }; + plotfunctions = derive2 { name="plotfunctions"; version="1.4"; sha256="0asmxw8283fpvl83h478j5nyg59xqifqaa8f2f6l199gvvswhhg2"; depends=[]; }; + plothelper = derive2 { name="plothelper"; version="0.1.9"; sha256="1ibznjqs4gpbq1vx79gg0fkm842xfqgpmmgqji2m6s712j3bdn5k"; depends=[farver ggfittext ggplot2 gridExtra magick plyr scales]; }; plotluck = derive2 { name="plotluck"; version="1.1.1"; sha256="16wqj4xfa8b7kal6v8mp2zlhwf9l3y6y5n44qbpvy652gzb2rw2z"; depends=[ggplot2 hexbin Hmisc plyr quantreg RColorBrewer scales]; }; plotly = derive2 { name="plotly"; version="4.9.2.1"; sha256="1f0x83a2s7200iqi6gpngijks06fcvcbm6701d5r5rxpb8rawppl"; depends=[base64enc crosstalk data_table digest dplyr ggplot2 hexbin htmltools htmlwidgets httr jsonlite lazyeval magrittr promises purrr RColorBrewer rlang scales tibble tidyr viridisLite]; }; plotlyGeoAssets = derive2 { name="plotlyGeoAssets"; version="0.0.2"; sha256="1c6i4dz5qmym1pcddgffcqgb76jz84252xldprg2caylrqvzv6b7"; depends=[]; }; + plotmm = derive2 { name="plotmm"; version="0.1.0"; sha256="01mi9znl471myq1yhfr8kdxpy0l67wgb3fid8gf2rzj5ph72b8hp"; depends=[amerika dplyr ggplot2 patchwork wesanderson]; }; plotmo = derive2 { name="plotmo"; version="3.5.7"; sha256="135k643vf2np0y20zrhfy4id1bjg7bi285csg5fzvarwlr4nldma"; depends=[Formula plotrix TeachingDemos]; }; plotpc = derive2 { name="plotpc"; version="1.0.4"; sha256="1sf7n7mfyaijldm24bc8r8pfm8pp9cyaja7am14z2wpj2j9f9vyq"; depends=[]; }; plotprotein = derive2 { name="plotprotein"; version="1.0"; sha256="14kfb4xxpfp8klz31kb7cpc39636ax2cx2483vqqkciccb28f0ks"; depends=[ade4 plotrix plyr seqinr XML]; }; @@ -11825,7 +12265,8 @@ in with self; { plotrr = derive2 { name="plotrr"; version="1.0.0"; sha256="07ilqpa3ypqb2gpnq23r9v4kkfxz06mcak9si9adr9sf6c7gqwxz"; depends=[dplyr ggplot2]; }; plotscale = derive2 { name="plotscale"; version="0.1.6"; sha256="0h2g0rv1lh70nqmqydgg5swwnwmy08wbjajxyb1c2a716rad765j"; depends=[]; }; plotwidgets = derive2 { name="plotwidgets"; version="0.4"; sha256="1w7c9grw4pyyra230196yq32snr4wdg6xi8vh4dx5df2v500wz22"; depends=[]; }; - pls = derive2 { name="pls"; version="2.7-2"; sha256="121byimd6bg7jbrq5wz5fpi0vxq0vh8g724vkhnjzszbvcv1xsb7"; depends=[]; }; + plpoisson = derive2 { name="plpoisson"; version="0.1.1"; sha256="0cixwd14p61x6v9v99m55l5n1hdzmrjjib2sr8kdcclbjy3fcvl7"; depends=[]; }; + pls = derive2 { name="pls"; version="2.7-3"; sha256="0b3ls12w19wc4xkhnsgmb333y9lyzwq3syjc3k8zs1agnw59c7cg"; depends=[]; }; plsRbeta = derive2 { name="plsRbeta"; version="0.2.5"; sha256="1p6vj9sw3hm6nax3vahmr6z58bgc8wl787949dszckn03pxhgvpb"; depends=[betareg boot Formula MASS mvtnorm plsRglm]; }; plsRcox = derive2 { name="plsRcox"; version="1.7.4"; sha256="1cpbhz85c8zpxcwi7ads981dynf83r5ka2zqy6i2swbi83jb5p4x"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; plsRglm = derive2 { name="plsRglm"; version="1.2.5"; sha256="004x934c34rgggwb25pcfm3vlj6gc1nfnigjxnxycxjqlx8g567b"; depends=[bipartite boot car MASS mvtnorm]; }; @@ -11835,13 +12276,13 @@ in with self; { plsgenomics = derive2 { name="plsgenomics"; version="1.5-2"; sha256="1pvb50nv6jc99bm2hsxpzazg26y49yi24wwwim5xcjj6j1szbip4"; depends=[boot fields MASS plyr reshape2 RhpcBLASctl]; }; plsmod = derive2 { name="plsmod"; version="0.0.1"; sha256="16yc8ydkc054is0f17nly4kwakfh410i3hqwas0479v1qywcszxb"; depends=[dplyr generics magrittr mixOmics parsnip purrr rlang tibble tidyr]; }; plsmselect = derive2 { name="plsmselect"; version="0.2.0"; sha256="044mwdqv5vw0apmx3yhn6xkdmw6baalvb8c6hhmawcs279kwi1m9"; depends=[dplyr glmnet mgcv survival]; }; - plspm = derive2 { name="plspm"; version="0.4.9"; sha256="03aj1ffq11hh931dbkxy9ba74xyvzmr1ylrj4fw1rbryrwqg89v6"; depends=[amap diagram shape tester turner]; }; - plspm_formula = derive2 { name="plspm.formula"; version="1.0.1"; sha256="1i2d1q8pz21js1ci8afnqzcky430hh1iwf5f6jr3j9yr9gs365k5"; depends=[plspm]; }; plsr = derive2 { name="plsr"; version="0.0.1"; sha256="0l413m49zjpb35v0zw8dlxn53nh7fghinbmwfmldl3jgdvay2s7x"; depends=[boot ggplot2 reshape2 shiny]; }; pltesim = derive2 { name="pltesim"; version="1.0"; sha256="0mvqp8di2gwhd9wc9kvnnpxd3hkr9b9lj6g5qlkqcbrgkq6fjahs"; depends=[coreSim ggplot2]; }; + plu = derive2 { name="plu"; version="0.1.0"; sha256="0k46in8x70dxipcll0mjadqbzgg30s6x8xg4kb6ldh2lqbkqpgss"; depends=[]; }; plugdensity = derive2 { name="plugdensity"; version="0.8-3"; sha256="1jdmq4kbs8yzgkf9f5dc7c8c52ia68fgavw7nsnc2hnz5ylw1qy9"; depends=[]; }; plumber = derive2 { name="plumber"; version="0.4.6"; sha256="1c5pryslly2ibbfc65qlavbnnaksp3p18xr1cghwbw00kz4ig147"; depends=[crayon httpuv jsonlite R6 stringi]; }; plumbr = derive2 { name="plumbr"; version="0.6.9"; sha256="1avbclblqfy57pd72ximvj3zq92q1w8vszvyf6fw75j5rfwdaibk"; depends=[objectSignals]; }; + pluralize = derive2 { name="pluralize"; version="0.2.0"; sha256="1s3jp41j8c03qb5zisj6m12ky7cz3n71d6p5apz0r0yn35inrhah"; depends=[V8]; }; plus = derive2 { name="plus"; version="1.0"; sha256="1l7lvnq7vahj8m7knmr4q3wj00ar7iq89j45a2dqn2bh0qyj68ls"; depends=[]; }; pluscode = derive2 { name="pluscode"; version="0.1.0"; sha256="1j9yr5j6mb346a5dn7v9bsppgnxdj1ryimlla4a08rv7bjyq5i6q"; depends=[httr jsonlite]; }; plusser = derive2 { name="plusser"; version="0.4-0"; sha256="1g100dh8cvn9q09j0jbkw4xmwjdp1lm4651369975fm99nrlp1j9"; depends=[lubridate plyr RCurl RJSONIO]; }; @@ -11849,14 +12290,14 @@ in with self; { pm4py = derive2 { name="pm4py"; version="1.2.7"; sha256="11xbsmsc9pxd98fy28l3nxzhb6c2pwvh1gmm34jnqn0rjbpb2n9i"; depends=[bupaR petrinetR purrr reticulate stringr]; }; pmc = derive2 { name="pmc"; version="1.0.3"; sha256="06bsab09i9ydgsjx5i50kdb22ldp4g1v83a01kz3mswybi4lv9w2"; depends=[dplyr geiger ggplot2 ouch tidyr]; }; pmcgd = derive2 { name="pmcgd"; version="1.1"; sha256="1pybzvyjmzpcnxrjsas06diy3x83i1r5491s6ccyr63l56hs55d5"; depends=[mixture mnormt]; }; - pmd = derive2 { name="pmd"; version="0.1.5"; sha256="18a7j5lvsl2jsay4g7790slj12xkljlnrpvg66cq5cvsid8qm8x8"; depends=[rcdk RColorBrewer rmarkdown shiny]; }; - pmdplyr = derive2 { name="pmdplyr"; version="0.3.1"; sha256="1155hikxfz9rp111sy96kj2dkka45ip1xi7kximq9ilsn5kwswzn"; depends=[dplyr lubridate magrittr pillar rlang tibble tidyr tidyselect vctrs]; }; + pmd = derive2 { name="pmd"; version="0.1.9"; sha256="1bwanvxlh4jayr86rs3kpif9m7zqj09w11h7j0pl2mgzxglb4fms"; depends=[enviGCMS igraph RColorBrewer]; }; + pmdplyr = derive2 { name="pmdplyr"; version="0.3.3"; sha256="1grnqqydi84hnig1522lv4xbh9ds32wnq7sha7jn1q4186wlz1qa"; depends=[dplyr lubridate magrittr pillar rlang tibble tidyr tidyselect vctrs]; }; pmhtutorial = derive2 { name="pmhtutorial"; version="1.5"; sha256="1hcw8hwpsivbhz86lnzy08q9n8vahnq8f7rmi4xkmg6b44582cqx"; depends=[mvtnorm Quandl]; }; pmml = derive2 { name="pmml"; version="2.3.1"; sha256="1qsrpbmwgmq9s45f30657cpfzkrvva8h1hqq1g3fd69p5g735rwp"; depends=[stringr XML]; }; pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.3"; sha256="0315kb5x04pidpzr04yaxyynp0mz4ilzp7vkspq4agjkds5hyc88"; depends=[]; }; pmpp = derive2 { name="pmpp"; version="0.1.1"; sha256="1srmkih6zsyf8yf1f045xy1afcz0if6nf1ncslgrq6rgm7330lkw"; depends=[data_table dplyr ggplot2 magrittr MASS Matrix minqa moments plm pracma]; }; pmr = derive2 { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; }; - pmsampsize = derive2 { name="pmsampsize"; version="1.0.2"; sha256="1jb6vpbc3p7xpskjs7cfkird096fl1faczmp3nfawf7pnvf679jg"; depends=[]; }; + pmsampsize = derive2 { name="pmsampsize"; version="1.0.3"; sha256="0i6yqxdrjlwdaghh9lzivqrszy6zfs06kjdfn88yyizy5d7z2k4s"; depends=[]; }; pmultinom = derive2 { name="pmultinom"; version="1.0.0"; sha256="0p2amb3y4jl24r21fii1qpmdbn5pfgywrx8k7x1jxpg49rk7k0rp"; depends=[fftw]; }; pmxTools = derive2 { name="pmxTools"; version="1.0"; sha256="02qv455jysnf218zsa494x1hwlsymil9p1ysdmhx26wdja6dwb6m"; depends=[chron ggplot2 ggrepel gridExtra MASS stringr XML]; }; png = derive2 { name="png"; version="0.1-7"; sha256="0g2mcp55lvvpx4kd3mn225mpbxqcq73wy5qx8b4lyf04iybgysg2"; depends=[]; }; @@ -11868,53 +12309,56 @@ in with self; { poibin = derive2 { name="poibin"; version="1.5"; sha256="1sxryvwwz6ldsnkzdy56p8c895s5yvpcai9ndyjv1x5q3l05wf9v"; depends=[]; }; poilog = derive2 { name="poilog"; version="0.4"; sha256="0bg03rd5rn4rbdpiv87i8lamhs5m7n7cj8qf48wpnirg6jpdxggs"; depends=[]; }; pointRes = derive2 { name="pointRes"; version="1.1.3"; sha256="0yfzidc93ghpf116lxbx4fr0d71wl79y3nz6mkirx4pli6gb8x8d"; depends=[ggplot2 gridExtra plyr TripleR]; }; - pointblank = derive2 { name="pointblank"; version="0.3.1.1"; sha256="0qqj3x4zvh14b2kirvvyzscm9jsk6k11s6cqjdwv6pyb32afn1iq"; depends=[blastula cli DBI dbplyr dplyr ggforce ggplot2 glue gt htmltools magrittr rlang scales tibble tidyselect]; }; + pointblank = derive2 { name="pointblank"; version="0.5.0"; sha256="1h6qmzglpxa7qy5vwdjysmjizszg6nqscq7ps4gb5808k7r0xb5b"; depends=[base64enc blastula cli DBI dbplyr digest dplyr fs ggforce ggplot2 glue gt htmltools knitr log4r magrittr rlang scales testthat tibble tidyselect yaml]; }; pointdensityP = derive2 { name="pointdensityP"; version="0.3.4"; sha256="0vv8j1yz8n2vmmp6bg2i8w3dchdbybsdxn3sk5d1ync2knih8l2s"; depends=[data_table]; }; + pointr = derive2 { name="pointr"; version="0.1.0"; sha256="0gdzm80r7jdwg1lv8qh902kqpqbz5b38w8lg3b9qr9k9wbir1cl9"; depends=[stringr]; }; poio = derive2 { name="poio"; version="0.0-4"; sha256="12d47hn9rsx2n0fl107dpswfklnh8nkm0kspcxf7yfljayvxr474"; depends=[assertive_base assertive_files assertive_properties assertive_sets assertive_strings assertive_types devtools digest dplyr magrittr purrr R6 stringi tibble whoami]; }; poisDoubleSamp = derive2 { name="poisDoubleSamp"; version="1.1"; sha256="13wyj9jf161218y4zjv2haavlmanihp9l59cvh7x8pfr9dh2dwr8"; depends=[Rcpp]; }; poisFErobust = derive2 { name="poisFErobust"; version="2.0.0"; sha256="1i6y3745i385y3r45i0xk7ciw1k6brmn709k5qhx8xphq0k4an5n"; depends=[data_table glmmML]; }; poisbinom = derive2 { name="poisbinom"; version="1.0.1"; sha256="0mjxg0s3nck7qrmq4bbrhwxfwr6fqml54s9k8q1mkfzlifa7qyf7"; depends=[Rcpp]; }; - poismf = derive2 { name="poismf"; version="0.1.3"; sha256="19jznsz59ch3ksgxii9j7lzaqlpc0wlvxx59ax60w76w2c9m0ify"; depends=[Matrix nonneg_cg Rcpp SparseM]; }; + poismf = derive2 { name="poismf"; version="0.2.3"; sha256="1jkds8ywvph4v27b2jxid2z5100bps6vjxa6w91w3342b8x9s293"; depends=[Matrix]; }; poisson = derive2 { name="poisson"; version="1.0"; sha256="1diyf1b84sr6iai3ghd3kcp6fc6w7fan49wzs1lzvxxsmp15ag2d"; depends=[]; }; poisson_glm_mix = derive2 { name="poisson.glm.mix"; version="1.2"; sha256="0328m279jfa1fasi9ha304k4wcybzr7hldww7wn0cl7anfxykbv8"; depends=[]; }; poissonMT = derive2 { name="poissonMT"; version="0.3-5"; sha256="14qkc8qz3423b13gp6gsp8cbb1nv9wwjjfa4i9zc15qy5i99ha26"; depends=[checkmate MASS robcbi robustbase]; }; poissonreg = derive2 { name="poissonreg"; version="0.0.1"; sha256="04qika4k0hak8kp6z4jqdzslymy7wklw4bx6kcmz3932avlwyym9"; depends=[dplyr glue parsnip purrr rlang tibble tidyr]; }; poistweedie = derive2 { name="poistweedie"; version="1.0"; sha256="18992fafypds3qsb52c09fasm3hzlyh5zya6cw32wnhipmda643m"; depends=[]; }; poker = derive2 { name="poker"; version="0.8.8"; sha256="14ik77440z22k4kwq0p1fn7adzi0p8mh8j8hd7ayinvrab4b5r85"; depends=[]; }; + polAr = derive2 { name="polAr"; version="0.1.3"; sha256="1m32kylb8klv8znfkzdapjvwn7p73mc18q0r7xc21vqbbjqaad8f"; depends=[assertthat attempt curl dplyr DT forcats formattable geofacet ggplot2 ggthemes glue gt magrittr purrr RColorBrewer readr rlang rvest scales stringr tibble tidyr xml2]; }; polaroid = derive2 { name="polaroid"; version="0.0.1"; sha256="0m3jbiz4n7mgbbdkd28m6dqsclyjcgshpxd6ws8df7zchx7fch07"; depends=[argonDash argonR colourpicker ggplot2 hexSticker png shiny shinyWidgets]; }; - policytree = derive2 { name="policytree"; version="0.9.2"; sha256="0d0b3rdmcr692rkbg223l0cwc86zlj2p75m9jlgk6w07f1n2h68p"; depends=[BH grf Rcpp]; }; - poliscidata = derive2 { name="poliscidata"; version="2.2.3"; sha256="18mmdzf9hrfz36rh1rg1j5q1m131xadppy272y4f4yay0ljafbm2"; depends=[abind car descr ENmisc gplots Hmisc plotrix plyr survey weights xtable]; }; + policytree = derive2 { name="policytree"; version="1.0.1"; sha256="0nsfspy0pvw0yfwkhd5c5wz7jr2iv12d6m3bw5ff9v2sbhd93piw"; depends=[BH grf Rcpp]; }; + poliscidata = derive2 { name="poliscidata"; version="2.3.0"; sha256="1ywfhksc6gcc2xk5lp6s8nn4wib92sv7p3wq92dzabf75q6mscix"; depends=[abind car descr gplots Hmisc plotrix plyr survey weights xtable]; }; + polished = derive2 { name="polished"; version="0.1.0"; sha256="0sibgvhws0z9jlaxvdsfgc8yz6b8p83fcf4aj1ysa2ghjf7pw9c9"; depends=[apexcharter digest dplyr DT htmltools htmlwidgets httr jose jsonlite lubridate purrr R6 rlang shiny shinycssloaders shinydashboard shinydashboardPlus shinyFeedback shinyjs shinyWidgets stringr tibble tidyr uuid xts]; }; polite = derive2 { name="polite"; version="0.1.1"; sha256="15hiifaf63hx0xn453lr0xhdnxqifrgyrgrymp0a9k3j7qja59jk"; depends=[here httr magrittr memoise ratelimitr robotstxt rvest usethis]; }; - politeness = derive2 { name="politeness"; version="0.6.0"; sha256="1mrg4k76h77qrd34b8imcn4nh0vchf8v6jbymlgigxgr7m75gpmj"; depends=[data_table ggplot2 glmnet quanteda spacyr stringr textclean textir tm]; }; + politeness = derive2 { name="politeness"; version="0.6.1"; sha256="06nq7pibz4q8pfg6lmrjyx5hfq8g9lmnjnqin9dpkag8wwm71b8y"; depends=[data_table ggplot2 glmnet quanteda spacyr stringr textclean textir tm]; }; politicaldata = derive2 { name="politicaldata"; version="0.1.3"; sha256="1n25k53mmlmmg9p9a36jh4z6xhl1yyv9v1c56mav873105h359wi"; depends=[]; }; pollen = derive2 { name="pollen"; version="0.72.0"; sha256="0plxc7rys5q4c1dwammv3b2pnys1hdh5ic0b2ndmv5cbyspf2h0y"; depends=[dplyr lubridate purrr]; }; pollimetry = derive2 { name="pollimetry"; version="1.0.1"; sha256="09zmcwlgzl4fnkdg2m424ibv3izzrm595c7pi4mc3bd1g8sa2ypn"; depends=[brms repmis]; }; pollstR = derive2 { name="pollstR"; version="2.0.1"; sha256="13g5z1hix1bmsxznq5qx82yf445rvvyn67ch9bihxm1hr4cr4sbl"; depends=[httr lubridate purrr stringr]; }; - pollster = derive2 { name="pollster"; version="0.1.1"; sha256="1a4k0d5cs9sziq1idd4q6dakl8cy3w8iakgqnd40w3d7vx63hmfd"; depends=[dplyr forcats labelled rlang stringr tidyr]; }; - polmineR = derive2 { name="polmineR"; version="0.8.0"; sha256="1j9f83b1lfb02q830zaffrspxrhp58j9l3cc80cxiflmkm9s1jm9"; depends=[data_table DT jsonlite knitr magrittr Matrix pbapply R6 RcppCWB slam stringi tm xml2]; }; - polspline = derive2 { name="polspline"; version="1.1.17"; sha256="0c7fnxpqpy3hibiim4yib6l6bq363s97wwvllxp4lp8h06fjcyyn"; depends=[]; }; + pollster = derive2 { name="pollster"; version="0.1.2"; sha256="03wfd9j8cyfbpjp9nphyvkn0csriymcidllb6s8744bb1s7vb9hv"; depends=[dplyr forcats labelled rlang stringr tidyr]; }; + polmineR = derive2 { name="polmineR"; version="0.8.4"; sha256="0b72m381flrdjfdc3qk9kkf1yfxpnr15qqn7ghl930n4457qanm1"; depends=[data_table DT jsonlite knitr magrittr Matrix pbapply RcppCWB slam stringi tm xml2]; }; + polspline = derive2 { name="polspline"; version="1.1.19"; sha256="0rhzf735hmbqfn2xbgcln4sqx7m9far72g5gq9mghgkw016kqglm"; depends=[]; }; polyCub = derive2 { name="polyCub"; version="0.7.1"; sha256="0ln1n5w64vgq63gm4mm9wzl9lbp7ppgaxg0ba0yw0xsr5cmkyp37"; depends=[sp]; }; - polyMatrix = derive2 { name="polyMatrix"; version="0.2.5"; sha256="18s2213wdx9jgwq04b5k6vd7xkq39pcpn4z70n9w0h9l0zmjriaw"; depends=[MTS polynom]; }; + polyMatrix = derive2 { name="polyMatrix"; version="0.3.1"; sha256="0k62cidsmryg64vbs1ar24m1dknxpddzqvdxbyk3n85r9cx3sqcv"; depends=[MTS polynom]; }; polyPK = derive2 { name="polyPK"; version="3.1.0"; sha256="0cb83sq8iz4swr73vwhh8n4k62p6321nsy1sz5fba0wiicycxf55"; depends=[circlize corrplot gplots Hmisc impute imputeLCMD mixOmics pcaMethods pkr plyr ropls sqldf xlsx]; }; - polyRAD = derive2 { name="polyRAD"; version="1.1"; sha256="04rhff7yzswilx67ak56vsr4sxfjzhd3d9fihnx2mnyddf1mhamq"; depends=[fastmatch pcaMethods Rcpp]; }; + polyRAD = derive2 { name="polyRAD"; version="1.2"; sha256="10j414h1x0ac9vbmhw19486an0x4bqr1hcyx7znaqq8bqg7vajgb"; depends=[fastmatch pcaMethods Rcpp]; }; polySegratio = derive2 { name="polySegratio"; version="0.2-5"; sha256="0djw49mbhd7x6jr0f5qkb9akw3fw3ax4w9xv8iwa5f65q5gbxpdf"; depends=[gdata]; }; polySegratioMM = derive2 { name="polySegratioMM"; version="0.6-4"; sha256="162xj52566kaxgfk7c14170xx07isyjmqb9skvhrdg7sz20lc3l1"; depends=[coda gtools lattice polySegratio]; }; polyaAeppli = derive2 { name="polyaAeppli"; version="2.0"; sha256="0kyz3ap92xz7aqyviyrpggfmicy1gybrx7y19djsmixcwz53zqch"; depends=[]; }; - polyapost = derive2 { name="polyapost"; version="1.5"; sha256="0r2h51l2y0sj0xahdzfy1lyq4kh166crh2j02sk85q577q9d883y"; depends=[boot rcdd]; }; + polyapost = derive2 { name="polyapost"; version="1.6"; sha256="1ls9rcagv075zhznx1zhvffrijwaipc6xvdp266f0zxi49bwx747"; depends=[boot rcdd]; }; polyclip = derive2 { name="polyclip"; version="1.10-0"; sha256="0jyk4maqiblvj095jd59dr76kbniyli3v3xvy0a72ljszq6vrnkl"; depends=[]; }; polycor = derive2 { name="polycor"; version="0.7-10"; sha256="0wzwzklflbhi8sv9m7ijwr16v9zmkk0j0v4pbcpf32f8lbn3psna"; depends=[Matrix mvtnorm]; }; polyfreqs = derive2 { name="polyfreqs"; version="1.0.2"; sha256="13859vbpys5yj1qiapyzv9wlvi6x6k0rm335bsi1v07ch3x2bh3b"; depends=[Rcpp]; }; - polyglot = derive2 { name="polyglot"; version="0.2.1"; sha256="1w52vhix5pynx2gz9f71yi9x5cdkp4sbs98zz2d5z993qbbf1wyq"; depends=[magick]; }; + polyglot = derive2 { name="polyglot"; version="0.3.0"; sha256="1mmmdqaq882qys41lmm009ncg9s9h5x1q8psv0v3pwpar0d7vgff"; depends=[magick pins]; }; polylabelr = derive2 { name="polylabelr"; version="0.2.0"; sha256="01b2v0l5g8nxwbd6nwqv8ahypgh6gfhd4qabg75brlj7z1iyfzf2"; depends=[Rcpp]; }; - polymapR = derive2 { name="polymapR"; version="1.0.20"; sha256="16gyzlvj2nfyl9ypv5cmvqvn3phxpxf36b0bnvslkxyyx0fsyxrx"; depends=[combinat doParallel foreach igraph knitr MDSMap]; }; + polymapR = derive2 { name="polymapR"; version="1.1.0"; sha256="01yvp5xsbwya63rjrcirplfvryk14yzap6nxf24qfcw93hm3rl81"; depends=[doParallel foreach igraph knitr MDSMap]; }; polynom = derive2 { name="polynom"; version="1.4-0"; sha256="1pflscwc0qzdf0y60j7s0dkglgmz18xajywfbn6s263idyr8idy5"; depends=[]; }; polypoly = derive2 { name="polypoly"; version="0.0.2"; sha256="00c1hrnf575awvh0rlsnf6nkgi9p3fnqhd1knamkgb4icwi5s46d"; depends=[ggplot2 reshape2 rlang tibble]; }; polyreg = derive2 { name="polyreg"; version="0.6.7"; sha256="1znl46m4zfd0f4qwg3r2anz3nyn8hk607772pzxiwj5w3xc96g56"; depends=[dummies nnet partools regtools RSpectra]; }; polysat = derive2 { name="polysat"; version="1.7-4"; sha256="08jmkik4s2171znp3w4i0v0g0k2s0di3xqwr9sf9hyd0sf8af8dp"; depends=[Rcpp]; }; polywog = derive2 { name="polywog"; version="0.4-1"; sha256="02qk1cyvkd77mwlvhj1zzzi0bmy7qxz29j2v730wp7rz4w7h5x5n"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; }; pom = derive2 { name="pom"; version="1.1"; sha256="02jv19apn0kmp1ric2cxajlaad2fmsz4nm4izd2c3691vzas7l83"; depends=[matrixcalc]; }; - pomdp = derive2 { name="pomdp"; version="0.9.2"; sha256="0bzppkda355zj467ahcyaf2dsjajyiznzi0y07n9pf9ccr6rh5lg"; depends=[igraph]; }; - pomp = derive2 { name="pomp"; version="2.8"; sha256="13y1jfx9j2dqya9icv4k5wvkjs09d3xhqkzwicf0zdfqlypjd79l"; depends=[coda deSolve digest magrittr mvtnorm plyr reshape2]; }; + pomdp = derive2 { name="pomdp"; version="0.99.0"; sha256="0plqmxzq46vgyg7365rp1m36ih5lll1kmj195iycwvsa1qaadw92"; depends=[igraph Ternary visNetwork]; }; + pomp = derive2 { name="pomp"; version="3.1"; sha256="07811rg0ixp7b7wqrhw6bm670s4s84cf7i43l5icfjqnq4xjldib"; depends=[coda deSolve digest magrittr mvtnorm plyr reshape2]; }; pompom = derive2 { name="pompom"; version="0.2.0"; sha256="1alz3lrj7m16vhymsvvrcmf0kmgx88q2f3v4j6wiciqv77bnyai1"; depends=[ggplot2 lavaan qgraph reshape2]; }; pooh = derive2 { name="pooh"; version="0.3-2"; sha256="0qwa5j91aypasvsf4xcfbl6lz7llawdr38jiflzmfak2ad72rv7j"; depends=[]; }; pool = derive2 { name="pool"; version="0.1.4.3"; sha256="065pbvhgvvgv00df4kj4zn7mlbrv2iqa1583k0hlgavn15gfm6d2"; depends=[DBI dbplyr dplyr later R6]; }; @@ -11922,45 +12366,43 @@ in with self; { poolfstat = derive2 { name="poolfstat"; version="1.1.1"; sha256="12iwhfj1a87mbis7whgp4z3qg97xkj90rw8b9jsqnfmzhz6fn0yp"; depends=[doParallel foreach]; }; pooling = derive2 { name="pooling"; version="1.1.2"; sha256="19mrzax3k35fhgjpnlrigf0nscsdl3xb7k82s5q472k4bcz7ya5b"; depends=[cubature data_table dplyr dvmisc ggplot2 ggrepel mvtnorm numDeriv]; }; poolr = derive2 { name="poolr"; version="0.8-2"; sha256="1rkfnrz5x7f9kqpivj0gvs3fxfb9agnm8sybb7wmvvcsmshzrpkf"; depends=[Matrix]; }; - poorman = derive2 { name="poorman"; version="0.1.11"; sha256="06b1h2a391ha7jd38rr44mzf2wry2bcgg16ypcv2scnfiwm96gnk"; depends=[]; }; + poorman = derive2 { name="poorman"; version="0.2.1"; sha256="0amrhjxld49p3mhlp10ym5pljw8gxamw2drvq8qrpwdzd3687z4w"; depends=[]; }; pop = derive2 { name="pop"; version="0.1"; sha256="0hbxdrkasb69x7ipddvyrzl5vvc7dd6rzj1vy7v3chg3rzgq89cj"; depends=[igraph MASS]; }; popEpi = derive2 { name="popEpi"; version="0.4.8"; sha256="1gc7kyik0209pc8mvl6c69lzb3dnkif0mby4l4pq8zfdz73lmi06"; depends=[data_table Epi survival]; }; popKorn = derive2 { name="popKorn"; version="0.3-0"; sha256="1zcl6ms7ghbcjyjgfg35h37ma8nspg15rk2ik82yalqlzxjf7kxw"; depends=[boot]; }; popReconstruct = derive2 { name="popReconstruct"; version="1.0-6"; sha256="0nmf93dy2qf7z9mafpy99ry53aapbxlismn7drn732r8gvravapx"; depends=[coda]; }; popbio = derive2 { name="popbio"; version="2.7"; sha256="02dbb2sinn1n8a9dg8lvf35sc8hb14c90mjymz2gk64xdysf0m2j"; depends=[]; }; popdemo = derive2 { name="popdemo"; version="1.3-0"; sha256="0760ajqaq822m0j092gdqzhgw1mk413k09mmmwyzb0jzj6bd15q3"; depends=[expm MCMCpack]; }; + popgenr = derive2 { name="popgenr"; version="0.1"; sha256="1lidddf8p1z4bja9dabzmak6rzfyqwch046h79yc96c11rv36l4j"; depends=[]; }; popkin = derive2 { name="popkin"; version="1.3.0"; sha256="1gr2glyavvf2r89zwiama3qhmq32rdzjsqkhv70afmsapk6f4dhr"; depends=[RColorBrewer Rcpp RcppEigen]; }; poplite = derive2 { name="poplite"; version="0.99.23"; sha256="0kf5k4iz4cvzd3avq753jn1gkpnhzi9m4148lq7rgv7h433qydwn"; depends=[DBI dbplyr dplyr igraph lazyeval RSQLite]; }; - poppr = derive2 { name="poppr"; version="2.8.5"; sha256="0jq8ykz77z3rgijmhav1sz34a5hkjzs9mlcp5y0354i2l229ylqd"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas phangorn polysat rlang shiny vegan]; }; + poppr = derive2 { name="poppr"; version="2.8.6"; sha256="0c1blca4bcimqpsfl9xrdwhmyxrasg8yb7xgrwl4hk8f3av3i25l"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas phangorn polysat progressr rlang shiny vegan]; }; popprxl = derive2 { name="popprxl"; version="0.1.4"; sha256="076aia4qbq5yw2nxafq2ys5n5c7wv77i8k1nmzb3all193vjf203"; depends=[poppr readxl]; }; - popsom = derive2 { name="popsom"; version="4.2.1"; sha256="11hzsr69rjklyxkp8jbp6794a4r3cyid0k40dz8d35ca068y2vcl"; depends=[class fields ggplot2 som]; }; + popsom = derive2 { name="popsom"; version="4.3.0"; sha256="144h04mrj86z7cb7bbk4zg7bg1l4vvpi1sc0f6968lgcr8swfips"; depends=[class fields ggplot2 som]; }; poptrend = derive2 { name="poptrend"; version="0.1.0"; sha256="0hypxpb18azg6q1mqrphbx3x262h9ybwhlkb8fyd6vr7jjb5wn3h"; depends=[mgcv]; }; populationPDXdesign = derive2 { name="populationPDXdesign"; version="1.0.3"; sha256="0p73ddv3j1s1vs4j3axnsf39n626qjv0w1qlq9p7km4s6729bhgv"; depends=[devtools ggplot2 plyr roxygen2 shiny shinycssloaders]; }; - porridge = derive2 { name="porridge"; version="0.0.4"; sha256="1b43yxhqfrkz777rp6yqw4in5i22lkfnh41f05dqnns2qg5hdlyp"; depends=[MASS mvtnorm Rcpp RcppArmadillo]; }; - portalr = derive2 { name="portalr"; version="0.3.3"; sha256="0fxk08666xp3ak207l90qqkz6a0si2mi9sjhb92k304l4j1zjb84"; depends=[clisymbols crayon dplyr forecast gh httr lubridate lunar magrittr rlang tidyr usethis]; }; - portes = derive2 { name="portes"; version="3.0"; sha256="144fipskh6yb6xcz3m5bgh2kwjwa58zaw24y88hzzrdvh9glvyrc"; depends=[forecast]; }; - portfolio = derive2 { name="portfolio"; version="0.5-0"; sha256="1hpz5jhnffsb6qzwh0vciszi5wx7x184mk2dai5ph0xvaxbm23r1"; depends=[lattice nlme]; }; + porridge = derive2 { name="porridge"; version="0.1.0"; sha256="1c71bgq868gw4a8xsfj0qbvcw9bnm6vvbrsbzr31r30fbixjy2j6"; depends=[MASS mvtnorm Rcpp RcppArmadillo]; }; portfolio_optimization = derive2 { name="portfolio.optimization"; version="1.0-0"; sha256="1rdhwffsjc1pa1qq7rqy6dwk8yrcblkmijz94p2w7sf2v4jmwxxr"; depends=[magrittr MASS modopt_matlab xts]; }; - portfolioBacktest = derive2 { name="portfolioBacktest"; version="0.2.1"; sha256="15yh3vi8qdahmsy2lic77vfv9c5ssalw08lmhq6vk9dbcl04z5n1"; depends=[digest doSNOW evaluate foreach ggplot2 PerformanceAnalytics quantmod R_utils rlang snow xts zoo]; }; - portfolioSim = derive2 { name="portfolioSim"; version="0.2-7"; sha256="1vf46882ys06ia6gfiibxx1b1g81xrg0zzman9hvsj4iky3pwbar"; depends=[lattice portfolio]; }; + portfolioBacktest = derive2 { name="portfolioBacktest"; version="0.2.2"; sha256="095f84d448dwh9ycp64ngn1pfm72n2b8d61w2vyd6mk3gh24361i"; depends=[digest doSNOW evaluate foreach ggplot2 PerformanceAnalytics quadprog quantmod R_utils rlang snow xts zoo]; }; portsort = derive2 { name="portsort"; version="0.1.0"; sha256="0swl39dn7lzwvps18bva4l64a441gkf6lbwcwrhlf93f1ardvxji"; depends=[xts zoo]; }; postDoubleR = derive2 { name="postDoubleR"; version="1.4.12"; sha256="19z8wisi16g7a78gw16r72dkxh3x5qh888qz260ih5naq0p8vy71"; depends=[doParallel ggplot2 glmnet grf neuralnet progress]; }; postGIStools = derive2 { name="postGIStools"; version="0.2.4"; sha256="04d6iqnk7j2lgv1h5c94j6y89jk75pmv26sxa51s5iwkjq7rchym"; depends=[DBI jsonlite rgdal rgeos RPostgreSQL sp stringr]; }; - postHoc = derive2 { name="postHoc"; version="0.1.1"; sha256="0sfwhgh8y6y3df5qx0n488fvddg5fj6cql3gml7fwzjw0hsgkdsw"; depends=[igraph multcomp]; }; + postHoc = derive2 { name="postHoc"; version="0.1.3"; sha256="1l7r9md9iyav5vvjykpsnqv9whspzcmnppfpqm6qy5s5vk6b8zfd"; depends=[igraph multcomp]; }; posterdown = derive2 { name="posterdown"; version="1.0"; sha256="13plrrnylw3yldm0md1gr5drccfjk9f2wwlhz6lrmb3px7w5nqs0"; depends=[pagedown rmarkdown yaml]; }; postinfectious = derive2 { name="postinfectious"; version="0.1.0"; sha256="1v327zxxiwc1cdksk6s39lkkgck5dxg169pp3jiqmm7xs35dcl6y"; depends=[]; }; postlightmercury = derive2 { name="postlightmercury"; version="1.2"; sha256="1345ckp50jplcdqp3a250c6mhapqh9322jzpxj5dyqmbg2nmgp9i"; depends=[crul jsonlite purrr rvest tibble xml2]; }; postlogic = derive2 { name="postlogic"; version="0.1.0.1"; sha256="11bpmfn375zpyg90dh44h86cvppzri1smmkn26jyydqjz74f4q9w"; depends=[]; }; potts = derive2 { name="potts"; version="0.5-9"; sha256="1kiha209w9nyyx4qqsdp51q2y7ny67nzqkdanlrh2106lcab3hj8"; depends=[]; }; pould = derive2 { name="pould"; version="1.0.0"; sha256="03338c61njhrb1dyxndyci1kdalzc38h0l7a1majv8nf82k40l62"; depends=[BIGDAWG gap ggplot2 haplo_stats reshape2]; }; - povcalnetR = derive2 { name="povcalnetR"; version="0.1.0"; sha256="11hwb52lrvdxplsx85ps54k2k7cvr0k4g5s2cj2a5l3rlqbyayx8"; depends=[dplyr ggplot2 ggthemes httr js jsonlite memoise naniar purrr readr stringr tibble tidyr]; }; - powdR = derive2 { name="powdR"; version="1.2.0"; sha256="0l1sb4bxam53jg1zfzqy851652c0yr88gz04z97cqdcn7smg6fgi"; depends=[baseline DT ggplot2 ggpubr nnls plotly plyr reshape shiny shinyWidgets tidyr]; }; + povcalnetR = derive2 { name="povcalnetR"; version="0.1.1"; sha256="0ah6n3wpjiwyh0mancqqpvyknx25dxr13p0nqnrfzmhfwyaywar0"; depends=[dplyr httr js jsonlite memoise naniar purrr readr stringr tibble tidyr]; }; + powdR = derive2 { name="powdR"; version="1.2.2"; sha256="16zcywsqi25fjw01khqsx2lsm3zrgqi0jyc38b6n3yaw7p0x7n31"; depends=[baseline DT ggplot2 ggpubr nnls plotly plyr reshape shiny shinyWidgets tidyr]; }; powdist = derive2 { name="powdist"; version="0.1.4"; sha256="1my88ag5q9hwkn2wy79jl9008gpvg0bsrnyc81gkdfi7pjh2mp1z"; depends=[gamlss_dist normalp rmutil]; }; - poweRlaw = derive2 { name="poweRlaw"; version="0.70.5"; sha256="1z1x93zc4qim53bx4cjq611xfa1rxw7cr2j2saq9vxr1j58fw99p"; depends=[pracma]; }; + poweRlaw = derive2 { name="poweRlaw"; version="0.70.6"; sha256="14d1myxllvm1grnfiszzzxaiqpb2jpmsi19wq70r8r2wki293h7g"; depends=[pracma]; }; powerAnalysis = derive2 { name="powerAnalysis"; version="0.2.1"; sha256="0cma4v402n6wcb2gy9g1ymydzh8vimy9nfrrn8xhnjsf7x6jh215"; depends=[]; }; powerCompRisk = derive2 { name="powerCompRisk"; version="1.0.1"; sha256="11xprjn9hzi8gxrsi7wivwgchg9h2apgxa63fp466ngjfy5ybxf4"; depends=[mvtnorm]; }; - powerEQTL = derive2 { name="powerEQTL"; version="0.1.3"; sha256="1045vkzl5p20mqlsm0j6vnyyvfz5v6jyy443c38sw1cps0a09i1n"; depends=[powerMediation]; }; + powerEQTL = derive2 { name="powerEQTL"; version="0.1.7"; sha256="1hbj1s02cybcshxlflv0icx6g4528i40kk106cd3id0g6hmdmvrz"; depends=[powerMediation]; }; powerGWASinteraction = derive2 { name="powerGWASinteraction"; version="1.1.3"; sha256="1i8gfsk9qzx54yn661i4x9k7n7b6r1jd808wv1hcq7870mzyb27k"; depends=[mvtnorm pwr]; }; + powerLATE = derive2 { name="powerLATE"; version="0.1.0"; sha256="16hllyrigsp2zfiklx8lnh63kbidlyycza19iz94y5f8gwx3hrg2"; depends=[]; }; powerMediation = derive2 { name="powerMediation"; version="0.3.2"; sha256="06liw58hwvd5n55axwldrngwfqckmi5yh2i9b2c75cghqdnihvby"; depends=[]; }; powerSurvEpi = derive2 { name="powerSurvEpi"; version="0.1.0"; sha256="1xxicvw113mc2y889rklws3xml5z64sgjpn4wg95gbw6nadch7zz"; depends=[survival]; }; powerbydesign = derive2 { name="powerbydesign"; version="1.0.4"; sha256="0xd4hylx7jl4ksycz5gfjcgy92mh5c9d4r34ap1g81ybmyk7yrsj"; depends=[gdata ggplot2 lme4 MASS plyr reshape2 stringr]; }; @@ -11975,7 +12417,6 @@ in with self; { ppgam = derive2 { name="ppgam"; version="1.0.1"; sha256="0w2jci5k0y8m7rapj8w6xq849y59m7y4fp9n3f5l6q954mbc6bv0"; depends=[evgam MASS mgcv]; }; ppgmmga = derive2 { name="ppgmmga"; version="1.2"; sha256="1dq0p3xna5r1kiyhiziz3wc78dfqh362qhna5hmkjzhljawr9jg0"; depends=[cli crayon GA ggplot2 ggthemes mclust Rcpp RcppArmadillo]; }; ppitables = derive2 { name="ppitables"; version="0.5.2"; sha256="1fwl2mscnfkbdpdjb0vkyv6xrbi73rfkxlbpri35hfqscaxlzk98"; depends=[tibble tidyr]; }; - ppls = derive2 { name="ppls"; version="1.6-1.1"; sha256="1zyrisy3c4cz896j1bjh61sf57wdl9p8ywdq268cl819szfq78mx"; depends=[MASS]; }; ppmHR = derive2 { name="ppmHR"; version="1.0"; sha256="1fc9rrk3ir3dq5d518ih67dvknhz1ln6668wy2mzsdndaysgm12g"; depends=[nleqslv]; }; ppmlasso = derive2 { name="ppmlasso"; version="1.1"; sha256="1w13p1wjl1csds1xfc79m44rlym9id9gwnp3q0bzw05f35zbfryg"; depends=[spatstat]; }; pps = derive2 { name="pps"; version="0.94"; sha256="0sirxpagqc2ghc01zc6q4dk691six9wkgknfbwaqxbxvda3hcmyq"; depends=[]; }; @@ -11994,57 +12435,62 @@ in with self; { prclust = derive2 { name="prclust"; version="1.3"; sha256="0p0sf8248aigs99py8mpzz743jnrf7n1nv5shag15arxz9yx7zn3"; depends=[Rcpp]; }; prcr = derive2 { name="prcr"; version="0.2.1"; sha256="0k5vl14akqf8qvak6h7a19qxn4wzpyxq7lyvdhxfh8l4gs4ca2l6"; depends=[class dplyr forcats ggplot2 irr lpSolve magrittr purrr tibble tidyr]; }; pre = derive2 { name="pre"; version="1.0.0"; sha256="07iai8vkxmx0dhnqy28gwh1hwc2iqg7bb0mwm8c68qpp8ffxwplm"; depends=[earth Formula glmnet Matrix MatrixModels partykit rpart stringr survival]; }; + precautionary = derive2 { name="precautionary"; version="0.1-2"; sha256="0fn8wapkvv5az0khj8gifs4b2hdvznsajqqnbisj2scdbk6p03hr"; depends=[data_table dplyr escalation kableExtra knitr magrittr rlang stringr]; }; precintcon = derive2 { name="precintcon"; version="2.3.0"; sha256="1sf0mfqa77aqhbx3hg8pv582ibmfnv6vigqcd3xqsbq7nigy2ms9"; depends=[ggplot2 scales]; }; - precrec = derive2 { name="precrec"; version="0.11"; sha256="1y0d0jqpvh0c96zi2fp7q1f25n5sm6ai2k6l54j9c3plkk1vw3lp"; depends=[assertthat data_table ggplot2 gridExtra Rcpp]; }; + precisely = derive2 { name="precisely"; version="0.1.0"; sha256="0c44qwk1w1qic6iqkjv7sxd47x9x1ikjnvd2870izzklwv2yq2ly"; depends=[dplyr ggplot2 magrittr purrr rlang shiny shinycssloaders shinythemes tidyr]; }; + precommit = derive2 { name="precommit"; version="0.1.2"; sha256="1p00f0mn9vgij9y4bf3ryd80wirf9brmxdv1njz19cv5vgcvgz0z"; depends=[docopt fs here magrittr purrr R_cache rlang rprojroot rstudioapi usethis withr yaml]; }; + precrec = derive2 { name="precrec"; version="0.11.2"; sha256="1j8k48sg49qrw7ib2sv96961nmyvc4a732x20qrvs3y65d8zl1m1"; depends=[assertthat data_table ggplot2 gridExtra Rcpp]; }; + predReliability = derive2 { name="predReliability"; version="0.1.0"; sha256="18s9ijg3fcg6qb0y6pnwngmv69ajm93z0xjdzkq3fp5bxk1qylyb"; depends=[cluster rpart]; }; predhy = derive2 { name="predhy"; version="0.2.0"; sha256="0l3x9ivrlb43x3qbrpw5gjyfc3n3b4bbsav1r4hl96znypwi7j9f"; depends=[]; }; predict3d = derive2 { name="predict3d"; version="0.1.3.3"; sha256="1kb3jacpgzln1ddnkfzhvfpzzf9wig60lppca6iy0fvq5cm8ddr4"; depends=[dplyr ggiraphExtra ggplot2 magrittr modelr moonBook plyr prediction purrr reshape2 rgl rlang stringr TH_data tidyr]; }; prediction = derive2 { name="prediction"; version="0.3.14"; sha256="0awlq5lxfia6m2b91w73rksp93rbwv5gwqb36wbji4rgq41rzbrx"; depends=[data_table]; }; predictionInterval = derive2 { name="predictionInterval"; version="1.0.0"; sha256="029hc57cblfcbqckrghf95l2rkn7acgb4yr36da01bx8bmpww0bn"; depends=[ggplot2 MASS MBESS pbapply]; }; predictmeans = derive2 { name="predictmeans"; version="1.0.4"; sha256="11282jzmlkbawsh1k4582a7yh4xxfh01sn6zp5nbdsr9c9p6vqfz"; depends=[ggplot2 lme4 Matrix nlme numDeriv pbkrtest plyr]; }; - predictoR = derive2 { name="predictoR"; version="1.1.0"; sha256="12y23q08m7v4dl6anbkhf7zxy8wkah5bxy1c2fdcwb6ng3snpfvb"; depends=[ada colourpicker corrplot DT e1071 flexdashboard glmnet kknn neuralnet randomForest rattle ROCR rpart shiny shinyAce shinydashboardPlus shinyjs shinyWidgets tidyverse xgboost zip]; }; - predictrace = derive2 { name="predictrace"; version="1.0.0"; sha256="1vpamn1j1jqdjar14j7fn4gvr8wq8lpqfnrwifgl0qvpa4y1938y"; depends=[dplyr here tidyr]; }; + predictoR = derive2 { name="predictoR"; version="1.1.3"; sha256="18abvns6yi9vyrcgb1dfcnb4p1qvk7q3rg0vqc95fvhq604fcxj6"; depends=[ada colourpicker corrplot DT e1071 flexdashboard glmnet kknn neuralnet plyr randomForest rattle ROCR rpart shiny shinyAce shinydashboardPlus shinyjs shinyWidgets tidyverse xgboost zip]; }; + predictrace = derive2 { name="predictrace"; version="1.1.1"; sha256="1bcjp3y7n0ycnw9cfgkxzc0zmdv9zdadwi6i16hbnc52jrc0kfpk"; depends=[dplyr here tidyr]; }; predkmeans = derive2 { name="predkmeans"; version="0.1.1"; sha256="0352c50zlyzn8fczrkinayllj9jp978njjl7dazzkzypx0p20va5"; depends=[e1071 maxLik mgcv Rcpp RcppArmadillo]; }; predmixcor = derive2 { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; }; predtoolsTS = derive2 { name="predtoolsTS"; version="0.1.1"; sha256="0f9fapw9yjdzj6pwcskbyfwjsvg09ahn20vrv4bgi0dx8am291rl"; depends=[caret forecast Metrics tseries TSPred]; }; prefeR = derive2 { name="prefeR"; version="0.1.1"; sha256="1wgbwbmghsnc2cargwndda0xhcdswvzd0nkjq5g895kl8zcwgpyf"; depends=[entropy mcmc]; }; - preference = derive2 { name="preference"; version="1.0.2"; sha256="0lp28v6zyxjzb3zw38wwlbbw4g1y03kn2k82ycgn1smrj6dkcyda"; depends=[ggplot2 tidyr]; }; + preference = derive2 { name="preference"; version="1.1.3"; sha256="1m28hj0524mp08fqbrir1bm93i2slpc0rc6frkgvydrkr4sm7vzw"; depends=[ggplot2 tidyr]; }; prefmod = derive2 { name="prefmod"; version="0.8-34"; sha256="1fkqp75w3im6b0l4sfs1yr2id8ffp2xbpb6lkgnv833cri787d5x"; depends=[colorspace gnm]; }; prepdat = derive2 { name="prepdat"; version="1.0.8"; sha256="19rxyss96cmjhzm69f6l1cd3vkw3wskzhxnbmrz4546x00gf9g5v"; depends=[dplyr psych reshape2]; }; prepplot = derive2 { name="prepplot"; version="0.7"; sha256="1yqiq78iqsk49ky913x4h8f3638blyamrwdhhcmzfgy4n7dnk11x"; depends=[plotrix shape]; }; - preputils = derive2 { name="preputils"; version="1.0.2"; sha256="0cww3x7375ck56cm14ssalvpgvsdi4myr3p19zy4fcjy6fgyyxc5"; depends=[data_table]; }; + preputils = derive2 { name="preputils"; version="1.0.3"; sha256="1ryrxmcm9vxhblk9r1vaay8ihff6nnd87dzd3375lfcla2fr9jzv"; depends=[data_table]; }; prereg = derive2 { name="prereg"; version="0.4.0"; sha256="1jhlgp7ajq6mx7gn4kf3b7wqzs3v0678pa1r6p4mgvvynic8rnqj"; depends=[rmarkdown]; }; presens = derive2 { name="presens"; version="2.1.0"; sha256="175nr9pqn3m6kh9bcc1gxqmqv05xdsqdw9lx385lmm1g947d2159"; depends=[marelac measurements]; }; presentes = derive2 { name="presentes"; version="0.1.0"; sha256="0d6zhishc7wxcvvglgw44pc6c172qpxb8i4iw3lqbmji7ash5zpx"; depends=[]; }; preseqR = derive2 { name="preseqR"; version="4.0.0"; sha256="1g2rnnmi45649vpy6z45v5i3wxm54s138ajqrzwi3a5r7x3xnhq1"; depends=[polynom]; }; presmTP = derive2 { name="presmTP"; version="1.1.0"; sha256="134p58zzk8i0whscvl5qdfn4niksypyxavq1m15cvw4zzk4dk6fw"; depends=[mgcv survPresmooth]; }; + presser = derive2 { name="presser"; version="1.1.0"; sha256="1slkdfh0wq242adp6a60612sjz117bii3pbahn00bfmnpa9g1wya"; depends=[]; }; prettyB = derive2 { name="prettyB"; version="0.2.1"; sha256="1qpqr490bpvmj1ybjbh4lhiznqa0n3chn09m7bhn9wfm3ic56s0p"; depends=[]; }; prettyGraphs = derive2 { name="prettyGraphs"; version="2.1.6"; sha256="0yjpwxdy9mkj2k33zvd5klyv4ava46i19yls87n0bvf79y90ikpy"; depends=[]; }; prettyR = derive2 { name="prettyR"; version="2.2-3"; sha256="1rs90cmr5dyry724php90mp41qwzzk1z3gxfwcj1k157qawacyhr"; depends=[]; }; prettycode = derive2 { name="prettycode"; version="1.1.0"; sha256="1ifh9h73szc23p1ii77z0r68n1gghndqqdm07wd7gxsg5pppp1sg"; depends=[crayon]; }; - prettydoc = derive2 { name="prettydoc"; version="0.3.1"; sha256="02x4vf7rr4gazz6mmygynqnjs016jhjb2gg109sqrs0nwk1blcm9"; depends=[rmarkdown]; }; + prettydoc = derive2 { name="prettydoc"; version="0.4.0"; sha256="0c2kxc60z9mz1wk04mdz64j3bfk0s7n6h9fjf82f31vyfmh74ikz"; depends=[rmarkdown]; }; prettymapr = derive2 { name="prettymapr"; version="0.2.2"; sha256="151jp0l728krmxcyzwjh01mvd1zhqijq0nsgjaqsh0q8n3jmndi0"; depends=[digest httr plyr rjson]; }; prettyunits = derive2 { name="prettyunits"; version="1.1.1"; sha256="1ibmzgknw5896q2i6r59jz2izblxwgb29ivvjzx50pkd1jl9l6cs"; depends=[]; }; prevR = derive2 { name="prevR"; version="3.4.0"; sha256="1y61ggqjf3b2a5f9zprbp9ylfkcfk0jiqfymkyqci9figsnahdy1"; depends=[directlabels fields foreign GenKern ggplot2 gstat maptools rgdal sp]; }; prevalence = derive2 { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sgkw4ffc4wgn0w4s281fk2yifx5cn4svwijv30q0"; depends=[coda rjags]; }; prevederer = derive2 { name="prevederer"; version="0.0.1"; sha256="0vkx9nrlgp36xbl95lrb5sb5yivxlcw4yvbs8hgbm31kh0vbz32f"; depends=[httr]; }; prevtoinc = derive2 { name="prevtoinc"; version="0.12.0"; sha256="0ypdxcx9gh87a7ih3cw3yai47rzv41qwh4kpk6007ai8jkjv4n9w"; depends=[dplyr purrr rlang tibble]; }; - prewas = derive2 { name="prewas"; version="1.1.0"; sha256="0lsfy3sr59pzhrr4nz1ryvnmb54vk9hhdlnx8mrxlhfg8hs59l6r"; depends=[ape future future_apply phangorn vcfR]; }; - priceR = derive2 { name="priceR"; version="0.1.1"; sha256="1r276jh95ji6340yya6rnzjy5wpapa192a66cv07qhafvhi8yqfs"; depends=[curl dplyr gsubfn jsonlite lubridate purrr stringi stringr]; }; + priceR = derive2 { name="priceR"; version="0.1.4"; sha256="1c0692gahf6zhyvj3wjjcw6ffl4w7cx3kbqgv6vj2wncrjdl4548"; depends=[curl dplyr gsubfn jsonlite lubridate purrr stringi stringr]; }; pricesensitivitymeter = derive2 { name="pricesensitivitymeter"; version="1.1.1"; sha256="0zlvrzrqndnrwawwzqwpj7c7r86mb80njhv7dcm8l5qygnc4xz3b"; depends=[survey]; }; prim = derive2 { name="prim"; version="1.0.17"; sha256="037gfs6ibkk7rjv21vi2k5jx24plss0jsxkn12arvfg5p6xan08k"; depends=[misc3d rgl]; }; primePCA = derive2 { name="primePCA"; version="1.0"; sha256="0kpyqv3l58xcyd98a7c7ggsna30j6k62aliidlyxgv2ya0g0dshv"; depends=[MASS Matrix softImpute]; }; primefactr = derive2 { name="primefactr"; version="0.1.1"; sha256="11hi75jwjxrl9p5m8yjwjb20pc9y9vkhi8sjrnisdq2hm53m483w"; depends=[]; }; primer = derive2 { name="primer"; version="1.1.1"; sha256="1hw7qd0xq3bvzk5ms9q568a3nkj3ws4jnzbmlypy8c5x3ly6pl1d"; depends=[deSolve lattice]; }; primerTree = derive2 { name="primerTree"; version="1.0.5"; sha256="1ymj4y0a8pd0r15bsqilm03b2n0a633ibzzp2h0qkv880xqbikz4"; depends=[ape directlabels foreach ggplot2 gridExtra httr lubridate plyr RCurl reshape2 scales stringr XML]; }; - primes = derive2 { name="primes"; version="0.1.0"; sha256="0hhkgpkadvai9xcivfalsvr5w0irsxygyz3p2zngwl3g5rvvh5g9"; depends=[Rcpp]; }; + primes = derive2 { name="primes"; version="1.0.0"; sha256="130awf214lwhjb4jpi05by35z2w18x4f6pzn3ics1scz82jvfm56"; depends=[Rcpp]; }; princurve = derive2 { name="princurve"; version="2.1.4"; sha256="1b3grra328wkfsmqkkwp3lwdzhbdiwyq380qi5pl9r2jc6arnppj"; depends=[Rcpp]; }; prinsimp = derive2 { name="prinsimp"; version="0.8-8"; sha256="074a27ml0x0m23hlznv6qz6wvfqkv08qxh3v1sbkl9nxrc7ak4vn"; depends=[]; }; printr = derive2 { name="printr"; version="0.1"; sha256="13yqqcwfqnbhvcxwrr6j45qhnbxng3qwn2ygkr809gibg9grw471"; depends=[knitr]; }; prioGene = derive2 { name="prioGene"; version="1.0.1"; sha256="0k1rlvmfhj1m2zp5zaac8wcwjypd6f4dd8fxxsyrzsafp9aw189l"; depends=[AnnotationDbi org_Hs_eg_db]; }; - prioritizr = derive2 { name="prioritizr"; version="4.1.5"; sha256="08ahfwpyvvz0faii5b4r8dxrkdhvj85gvys1yz1hsnxhnya6m5pi"; depends=[ape assertthat BH data_table doParallel igraph magrittr Matrix plyr proto raster Rcpp RcppArmadillo rgeos sp tibble uuid]; }; - prioritizrdata = derive2 { name="prioritizrdata"; version="0.2.2"; sha256="1gljrll89r2y6nb4jwcp1pyjs5qrahqawi84kgg74w2q6xq65kga"; depends=[raster sp]; }; + prioritizr = derive2 { name="prioritizr"; version="5.0.2"; sha256="1m7f974h0fi9xigf551wgwrb09p6laddhqxsllb72vqhjkp5bw5k"; depends=[ape assertthat BH data_table doParallel exactextractr fasterize igraph magrittr Matrix plyr proto raster Rcpp RcppArmadillo rgeos sf sp tibble uuid]; }; + prioritizrdata = derive2 { name="prioritizrdata"; version="0.2.4"; sha256="0027nbkvp8b2w4cciabiqjdyxhjwh47k7dc36p79mkqfarh04rgv"; depends=[raster sp]; }; prioritylasso = derive2 { name="prioritylasso"; version="0.2.3"; sha256="1hmf81vcri0sfaphc0221skpvb2gz0zvxlmlhv7k8rhs1pvnqi8g"; depends=[glmnet survival]; }; prism = derive2 { name="prism"; version="0.1.0"; sha256="0d2llrpw5y0svrdzbk52pjrfp76lknrw4r8ciqq0cq3l6kbynh9r"; depends=[dplyr ggplot2 httr lubridate magrittr purrr raster readr stringr]; }; + prismadiagramR = derive2 { name="prismadiagramR"; version="1.0.0"; sha256="13x3y4rv9b2d013jd6853zkq8rbxq88wlffmdnjs1rca0fnfrn4f"; depends=[DiagrammeR dplyr]; }; prismatic = derive2 { name="prismatic"; version="0.2.0"; sha256="0j077khvagzs9lxrryi4q1czk1129r93cqf1i1hiz0b3wij2bwsg"; depends=[farver]; }; prisonbrief = derive2 { name="prisonbrief"; version="0.1.0"; sha256="1fnhg6vqdabdnhvgd19vnkfrdgz8a53snfrx6m6mmdwb6cvavb8m"; depends=[data_table dplyr httr magrittr passport rlang rnaturalearth rnaturalearthdata rvest stringr tibble tidyr xml2]; }; prithulib = derive2 { name="prithulib"; version="1.0.2"; sha256="12ybksrvxzc5gjz8m38cs35b7r3kd8m0zqm2c67pqw38vq82sjxm"; depends=[]; }; @@ -12053,18 +12499,17 @@ in with self; { proPubBills = derive2 { name="proPubBills"; version="0.1"; sha256="1fpn9x31jjahdyk0f30mbb3ijj4dsghrq9q94r04pjsgr2jw23zx"; depends=[dplyr httr stringr]; }; prob = derive2 { name="prob"; version="1.0-1"; sha256="05qcrsl790hn7p3ap4zj5i1b1sf674wvvrh42lyb7a0nsc09iq9n"; depends=[combinat fAsianOptions]; }; probFDA = derive2 { name="probFDA"; version="1.0.1"; sha256="093k50kyady54rkrz0n9x9z98z5ws36phlj42j25yip7pzhfd6sv"; depends=[MASS]; }; - probably = derive2 { name="probably"; version="0.0.4"; sha256="15wgaah2b6pkcqwv700gvkkky6xqyj75lpgaxxmflkkqqsirssww"; depends=[dplyr generics rlang tidyselect vctrs yardstick]; }; + probably = derive2 { name="probably"; version="0.0.6"; sha256="0g7d6mw4nj6lynbpaa4qbnyzpwgw1bwl44b7zxm6x1wal6p679ga"; depends=[dplyr generics rlang tidyselect vctrs yardstick]; }; probemod = derive2 { name="probemod"; version="0.2.1"; sha256="1cgjr03amssc9rng8ky4w3abhhijj0d2byzm118dfdjzrgmnrf9g"; depends=[]; }; - probhat = derive2 { name="probhat"; version="0.2.0"; sha256="04pzvrny045p8rpvh7va55qfak0b3751x2bi3sp9hqiwr8dys02z"; depends=[barsurf intoo kubik]; }; + probhat = derive2 { name="probhat"; version="0.3.1"; sha256="0d84hg1qhygpz2d1mc7sbaiqigjxa59b8ajppszrfaqhn19q102q"; depends=[barsurf intoo kubik]; }; probout = derive2 { name="probout"; version="1.1.1"; sha256="1hasrvxdig8n3fhzsbmq27050dyanzp1j0qlybnrkb41k9gyljda"; depends=[FNN MASS mclust]; }; proccalibrad = derive2 { name="proccalibrad"; version="0.14"; sha256="0vr55rpcqh9wvy3bklssrimp42x85w3sanjgshfij657v68vmx46"; depends=[]; }; processR = derive2 { name="processR"; version="0.2.3"; sha256="0zdckw8c4xavrlkaihj3il35whfcam27ra7f4xxhypf9fa9dhzr4"; depends=[diagram dplyr flextable ggplot2 ggrepel interactions lavaan officer predict3d psych purrr rlang rmarkdown rrtable semTools stringr tidyr tidyselect ztable]; }; processanimateR = derive2 { name="processanimateR"; version="1.0.3"; sha256="1ywn2hv2wg35i6ww1ckr6gcb709sf1c836ml542g8iiggwk3cvz5"; depends=[bupaR DiagrammeR dplyr htmltools htmlwidgets magrittr processmapR rlang stringr tidyr]; }; - processcheckR = derive2 { name="processcheckR"; version="0.1.2"; sha256="1l8qx7ivw6vwmw7d7x7dawv11aklbyjwpyial3crhamnj5389ngj"; depends=[bupaR dplyr edeaR glue rlang stringr]; }; - processcontrol = derive2 { name="processcontrol"; version="0.1.0"; sha256="0c0bksgq24blfkdgp5bn49sjnaajrg5bag8qzb5zffxbhnm4s30x"; depends=[plyr]; }; + processcheckR = derive2 { name="processcheckR"; version="0.1.3"; sha256="14d8148zcnyh9ycqy5nyszrafq3mgck87w80kx2apg52gkdaq18g"; depends=[bupaR dplyr edeaR glue rlang stringr]; }; processmapR = derive2 { name="processmapR"; version="0.3.4"; sha256="0kq940j8frmbal1nqxwv7wshkyv7y3vhax6zr0ngkf18xv73y76z"; depends=[BH bupaR data_table DiagrammeR dplyr edeaR forcats ggplot2 ggthemes glue hms htmltools miniUI plotly purrr RColorBrewer Rcpp rlang scales shiny stringr tidyr]; }; processmonitR = derive2 { name="processmonitR"; version="0.1.0"; sha256="1ckr438yifpsh095j6bb65dq3rdm7cfm8k7qsjmcqwjkww4j74z8"; depends=[bupaR dplyr edeaR ggplot2 magrittr miniUI shiny]; }; - processx = derive2 { name="processx"; version="3.4.2"; sha256="02awswxq6wh3rl99dncw5n6c1xmd0v81xcdp2dfyi6vm6b3gz84l"; depends=[ps R6]; }; + processx = derive2 { name="processx"; version="3.4.3"; sha256="07dhzijqnj2zkm3qrk4ppsv8wscn8ysdsjbidlg9zrbj1wcg4izj"; depends=[ps R6]; }; prodest = derive2 { name="prodest"; version="1.0.1"; sha256="16nqgd9wrjfxymwbxrnlak54cagbv3fxgbql0w5bxnmyrbbqy509"; depends=[AER DEoptim dplyr Matrix Rsolnp]; }; prodigenr = derive2 { name="prodigenr"; version="0.5.0"; sha256="1h15fwd4rclja0q80y119sah1qbyjlbaqxg360ywq9ig151lxsjq"; depends=[fs git2r rmarkdown rprojroot usethis withr]; }; prodlim = derive2 { name="prodlim"; version="2019.11.13"; sha256="03wvh3kirp1prac5nky6a5whs97rvaf4hc27x0fnh51sa17r42b8"; depends=[KernSmooth lava Rcpp survival]; }; @@ -12073,32 +12518,34 @@ in with self; { prof_tree = derive2 { name="prof.tree"; version="0.1.0"; sha256="0mjvxaacrgkzl0f1wn3fpgah4jh720safni66ri0dnriwcxis6rz"; depends=[data_tree]; }; profExtrema = derive2 { name="profExtrema"; version="0.2.1"; sha256="0gdhamnngh1yh3nb7l656qhdr61s0zn6h1hagh22k2fn11z3xhsl"; depends=[DiceKriging KrigInv lhs MASS microbenchmark pGPx quantreg rcdd RColorBrewer]; }; proffer = derive2 { name="proffer"; version="0.1.0"; sha256="19bri9v1i5ghh9az247k9wmj8dpkbfzdykmzx26jrkzqqsdbilzg"; depends=[cli processx profile RProtoBuf withr]; }; - profile = derive2 { name="profile"; version="1.0"; sha256="0m7fm490gqkbmnbdq3lac87zqb9qyx6546rlpa130rq1jnlgxfp6"; depends=[rlang tibble withr]; }; + profile = derive2 { name="profile"; version="1.0.2"; sha256="0yaxc846bvc29qx0q8jag7llsgiwhzx59nhnrad1v5sqyp3slk5r"; depends=[rlang tibble withr]; }; profileModel = derive2 { name="profileModel"; version="0.6.0"; sha256="0yq8hy43h62hlz8bbf9ila4a3xcwizi1if27b78xc5y857ncwad8"; depends=[]; }; profileR = derive2 { name="profileR"; version="0.3-5"; sha256="0fgc7585a7194c67irafjnx8g2j6mn3qhcfn76c6dh28clp20qp9"; depends=[ggplot2 lavaan RColorBrewer reshape]; }; profmem = derive2 { name="profmem"; version="0.5.0"; sha256="152dka39p9i17ydlhc92y6x6i8girn3wab1ycbqb9kva07j9d2h8"; depends=[]; }; profr = derive2 { name="profr"; version="0.3.3"; sha256="00bv1q0qn46nz4zjfs0l2yfh3hk71rajlp2rrlwg442z11k79ap9"; depends=[plyr stringr]; }; - proftools = derive2 { name="proftools"; version="0.99-2"; sha256="1vx0270sgx15dl6x3nnx13v5y4c0m18yvrhiycl429zky0jzxfr0"; depends=[]; }; + proftools = derive2 { name="proftools"; version="0.99-3"; sha256="095pxyyv6k818qwcjygbz1h24k0xkqi1agns8cqh2m5g64aynd70"; depends=[]; }; profvis = derive2 { name="profvis"; version="0.3.6"; sha256="0fbgd65b5n7bnvn2hab1w2hfzgj3ilxmpjnhrw2lj6g873x1m9b0"; depends=[htmlwidgets stringr]; }; progenyClust = derive2 { name="progenyClust"; version="1.2"; sha256="0azp5pvk316s8xbawcqwqfd80fxb4xn8hc6aq87xwksc6fhwp94l"; depends=[Hmisc]; }; prognosticROC = derive2 { name="prognosticROC"; version="0.7"; sha256="0lscsyll41hpfzihdavygdzqw9xxjp48dmy4i17qsx5h01jl1h4i"; depends=[survival]; }; progress = derive2 { name="progress"; version="1.2.2"; sha256="0dgzb362641aqm8xd88iqa8jmpdm43xs0aba0d5kk6fvapnxi95l"; depends=[crayon hms prettyunits R6]; }; - progressr = derive2 { name="progressr"; version="0.5.0"; sha256="0w4vx1sk0qxnzkjqzvc6facd142qah2nzzkrcmgnsajp025xxfs5"; depends=[digest]; }; + progressr = derive2 { name="progressr"; version="0.6.0"; sha256="1cvb1llxz7ys4535dfl6hl3j07g24mcvkg0kl46v4nnl7ka4jx67"; depends=[digest]; }; proj4 = derive2 { name="proj4"; version="1.0-10"; sha256="1l6i4735ki6y2qhmg1gmrj93rzrvgpzi23rr3a1akkqp58bnyfaz"; depends=[]; }; - projections = derive2 { name="projections"; version="0.3.1"; sha256="12vskql6x04jzik72a0vx83amfj01w9f7mxn052vsv7aaljbi124"; depends=[distcrete ggplot2 incidence]; }; - projects = derive2 { name="projects"; version="2.1.0"; sha256="0clrspmrlfi8w8h8afbpfjfg74qn1ys6zsb8gj3g5p0lcap2269g"; depends=[dplyr fs lubridate magrittr purrr readr rlang rstudioapi sessioninfo stringr tibble vctrs zip]; }; + projections = derive2 { name="projections"; version="0.5.1"; sha256="1wfsrrqfqi9hhxs2v4ahlb208wrs7xmvz7r6yqkd28msk0yfhmrg"; depends=[ggplot2 incidence]; }; + projects = derive2 { name="projects"; version="2.1.1"; sha256="04jlvvb8hln9i7b52yqj3f4qcdkzfrhsvjy7j2q7i60wlpdfy1in"; depends=[dplyr fs lubridate magrittr purrr readr rlang rstudioapi sessioninfo stringr tibble vctrs zip]; }; projmgr = derive2 { name="projmgr"; version="0.1.0"; sha256="1iysxcl6awvp7zbm04zyq4d9659fcz3sy711jnycsxhsk8hsvmc2"; depends=[gh magrittr]; }; projpred = derive2 { name="projpred"; version="1.1.6"; sha256="07bixjpnvj9i5hsr9bfycnxryzsw2vg27z1lw86aj7948wdjgar1"; depends=[ggplot2 loo Rcpp RcppArmadillo]; }; - promises = derive2 { name="promises"; version="1.1.0"; sha256="01l0ydjvvy6afcg5d6pzvk1ikd3djq8n2flv8c831ksn68z0zsn8"; depends=[later magrittr R6 Rcpp rlang]; }; + promises = derive2 { name="promises"; version="1.1.1"; sha256="002qkhcn3ri6a3w5fizjvdvrjgvqiw8i7rl9jglcnqik5kmwc61p"; depends=[later magrittr R6 Rcpp rlang]; }; promote = derive2 { name="promote"; version="1.1.1"; sha256="1cdz4xqinyzpbbgkxxd4f86n1h8zj88vp5z6w01cxd5ykyjf5411"; depends=[httr jsonlite stringr]; }; + promotionImpact = derive2 { name="promotionImpact"; version="0.1.4"; sha256="0v0qk9rifhv6xkc0iqhriswnm2lwlpgrk3gqhvd4pkkn2gx4cn3s"; depends=[crayon data_table dplyr ggplot2 ggpubr KernSmooth lmtest prophet Rcpp reshape2 scales stringr strucchange]; }; prop_comb_RR = derive2 { name="prop.comb.RR"; version="1.2"; sha256="10s52fkq7rv6v4gw1yd46f0fbg89ksim0qhgb5jbglzrqh585ny5"; depends=[rootSolve]; }; propOverlap = derive2 { name="propOverlap"; version="1.0"; sha256="0q72z9vbkpll4i3wy3fq06rz97in2cm3jjnvl6p9w8qc44zjlcyl"; depends=[Biobase]; }; propagate = derive2 { name="propagate"; version="1.0-6"; sha256="17jinz1jramlsf87i7vyn2qp82rc1dacljfaxxplrk3crhw3bhs7"; depends=[ff MASS minpack_lm Rcpp tmvtnorm]; }; properties = derive2 { name="properties"; version="0.0-9"; sha256="1zd66cg31yd53rqsc0cwxhlpfn7kvc67qdh3vyj9qib8kwxaw1zl"; depends=[]; }; + prophet = derive2 { name="prophet"; version="0.6.1"; sha256="08b5h4c83143q33slsa7x46bxa98rm5dg251zsb7ixvn2v0zkhk1"; depends=[BH dplyr dygraphs extraDistr ggplot2 Rcpp RcppEigen rlang rstan rstantools scales StanHeaders tidyr xts]; }; proportion = derive2 { name="proportion"; version="2.0.0"; sha256="0a71f6hz6blb7550m9x0di84vp51yjhnn952301rwlrh3axf6dbr"; depends=[ggplot2 TeachingDemos]; }; propr = derive2 { name="propr"; version="4.2.6"; sha256="16ghgzpwz6q9zlaa0pc8wqv0wpz81c75n7zwjyr1lv9y19qwlkfg"; depends=[fastcluster ggplot2 igraph Rcpp]; }; prospectr = derive2 { name="prospectr"; version="0.2.0"; sha256="16ba2dmg1v2gsd66s25c28s413vg5xcbhicb75qwpijlgmjvfpgi"; depends=[foreach iterators Rcpp RcppArmadillo]; }; - protViz = derive2 { name="protViz"; version="0.6.4"; sha256="1qq9bf4485x8cviry9fmhnv4hw9aw657w134003myzcv42c4pml6"; depends=[Rcpp]; }; + protViz = derive2 { name="protViz"; version="0.6.8"; sha256="0rn8fjg7791a4j2k1kk1jwx40xz20bfaavvflmhyzpl398vmmy3a"; depends=[Rcpp]; }; protag = derive2 { name="protag"; version="1.0.0"; sha256="1iaw2w1d7hdvlg5vplpqc49wq08dgmm0ifvp2v0ggqb8invvdnw8"; depends=[dplyr ggplot2 RColorBrewer]; }; proteomicdesign = derive2 { name="proteomicdesign"; version="2.0"; sha256="01s47pgwxy4xx10f3qmbfv59gbaj0qw017kpkpsn33s8w7ad63r0"; depends=[MASS]; }; proteomics = derive2 { name="proteomics"; version="0.2"; sha256="01cd4sb79gcx8gbzl624scvjbwhgcsca1wdvvfkhsv7jfwdd2ry2"; depends=[foreach ggplot2 plyr reshape2]; }; @@ -12111,23 +12558,25 @@ in with self; { protr = derive2 { name="protr"; version="1.6-2"; sha256="13vgiqkqqq1w2yj5f6i6scag0mr189zmisyvi6fgaw8g9dgxpxan"; depends=[]; }; proustr = derive2 { name="proustr"; version="0.4.0"; sha256="1qp4v4vb1qh137qn7zi1d2g999z17kq6kpyxy9355mj8c49iy8pn"; depends=[attempt rlang SnowballC stringr tidyr tokenizers]; }; provGraphR = derive2 { name="provGraphR"; version="1.0"; sha256="0s2hj8j3rjig37wpjlr2fgw2klwr6a26mxrnk1lq5d9262x6v3aa"; depends=[igraph Matrix provParseR]; }; - provParseR = derive2 { name="provParseR"; version="0.2"; sha256="13fb4fl395aqjcs2kyvm5z1ac5jkqn5nh2ylzig2p54h313bg0dk"; depends=[jsonlite]; }; - provSummarizeR = derive2 { name="provSummarizeR"; version="1.3"; sha256="0bbiz3lvk0lxxrcgsqww0q79505i0mzxfl03r3pm34amvqc7kl75"; depends=[dplyr provParseR]; }; - provViz = derive2 { name="provViz"; version="1.0.6"; sha256="0pnrprybn48jb02888pzn2y7vi1l24fxk6063sv6aiwpncminf9n"; depends=[]; }; + provParseR = derive2 { name="provParseR"; version="0.3"; sha256="0cmyb6da9l0822xrzni19r1ha6zzya385hk2ym9rmchvb34lax53"; depends=[jsonlite]; }; + provSummarizeR = derive2 { name="provSummarizeR"; version="1.4.2"; sha256="1pfnrvgqzpdhrsyh0y75idwj13zgcdj7ql6frpjmc0f5cggv7q1q"; depends=[dplyr provParseR]; }; + provTraceR = derive2 { name="provTraceR"; version="1.0"; sha256="19iillyh5zw64mmr6ik4ci1n2p651xqzxa4iq5bwa70imbzyy5ip"; depends=[provParseR]; }; + provViz = derive2 { name="provViz"; version="1.0.7"; sha256="0bjq8mywgm2jr0m0458wk6n5al7jr1psvh4g31z4qzlrrkfqgzzg"; depends=[]; }; provenance = derive2 { name="provenance"; version="2.4"; sha256="14dawdlimzbyjwq13kl0z2nkqfykwrj4kqa6pd8id4zyv7kls885"; depends=[IsoplotR MASS]; }; - proxy = derive2 { name="proxy"; version="0.4-23"; sha256="17b6qfllqrhzrxqgx7dccffgybnkcria5a68ap5ly3plg04ypm4x"; depends=[]; }; + proxy = derive2 { name="proxy"; version="0.4-24"; sha256="0z4wdnpv5x135nssxnmkkba7fivd5xgbpaabqjkl2na76vq9pzwc"; depends=[]; }; proxyC = derive2 { name="proxyC"; version="0.1.5"; sha256="159bc42x4shm6n3rh9fc8ziv3ivq0ipmpbasrh279hhn1prc8gg6"; depends=[Matrix Rcpp RcppArmadillo RcppParallel]; }; prozor = derive2 { name="prozor"; version="0.2.11"; sha256="1a2k69fvgi6vxgczk81kh8r2jxc6nirc51w6ac239rqjzb1zyhjm"; depends=[AhoCorasickTrie doParallel dplyr foreach Matrix plyr readr seqinr stringr]; }; prrd = derive2 { name="prrd"; version="0.0.3"; sha256="1j1hcs5h6h9nz3pdjnw9p2y837706k9yxxjgiv0mgnwyh8pmz425"; depends=[config crayon data_table DBI liteq RSQLite]; }; + prt = derive2 { name="prt"; version="0.1.0"; sha256="11idf3x5a1lv7wqfyayknvqy7crcy8w62ysziw0idwjhh0hr13kr"; depends=[assertthat backports cli crayon data_table fansi fst knitr pillar rlang tibble vctrs]; }; pryr = derive2 { name="pryr"; version="0.1.4"; sha256="06vj5xl9x37kbd3l5bw7sbgfdnp37spvrjrn976rxi04clqk966k"; depends=[codetools Rcpp stringr]; }; - ps = derive2 { name="ps"; version="1.3.2"; sha256="0127q6pw9iw8hhcfp231gmdh29nahh2n5jzc38avrzy7yrm4bwl9"; depends=[]; }; + ps = derive2 { name="ps"; version="1.3.4"; sha256="1cxfhnff22fbsr9vynhql0rhhrqfxvkb6kv11h2m740r9scwcs44"; depends=[]; }; psData = derive2 { name="psData"; version="0.2.2"; sha256="013hb6lk9rm2w08m5jbw90ndrcd4wyy2h125jx07c9bs60wh4mp4"; depends=[countrycode DataCombine reshape2 rio xlsx]; }; psSubpathway = derive2 { name="psSubpathway"; version="0.1.1"; sha256="1jzymhh1dy5w735fppqza7ilspsvyidkrdpq2yd3j5xfjckzfh5w"; depends=[GSVA igraph mpmi pheatmap]; }; psbcGroup = derive2 { name="psbcGroup"; version="1.4"; sha256="0l1hmgw4sislryws8hv7r2nglhcs6g9khg0372a70djvhz2l6gfi"; depends=[LearnBayes mvtnorm SuppDists]; }; pscl = derive2 { name="pscl"; version="1.5.5"; sha256="0vzf5wazs92bhqhqd66v3vwmbfmnh67gb2466g1xxawim649nk05"; depends=[MASS]; }; pscore = derive2 { name="pscore"; version="0.1-2"; sha256="1sfkxs2kv8lq87j3q9ci7j38c7gzfkp2l36lwcdhiidr2nls2x0c"; depends=[ggplot2 lavaan reshape2]; }; - psd = derive2 { name="psd"; version="1.2.0"; sha256="017iqz6awc7k3kv74jdc8wak62zzgnxvakl0qp774kx1kpv6hgji"; depends=[RColorBrewer Rcpp RcppArmadillo signal zoo]; }; - psda = derive2 { name="psda"; version="1.3.3"; sha256="0asw6pq8zifacr42dwhy52xhgvl82q95a34x4ymbylj1mipka54k"; depends=[ggplot2 plyr raster rgeos sp]; }; + psd = derive2 { name="psd"; version="2.1.0"; sha256="18zd9sa86sx52ncwx6qc9lch2j4kfn8l6w6vryjp5awkf89mv3b2"; depends=[RColorBrewer Rcpp RcppArmadillo]; }; + psda = derive2 { name="psda"; version="1.4.0"; sha256="0if42szf0gkgdl7d02x43i0fdb6hp47j918vx06aw7qcw6a8j3k2"; depends=[ggplot2 plyr raster rgeos sp]; }; pse = derive2 { name="pse"; version="0.4.7"; sha256="0kigfzsvx3gw7jwym4f19dydwwarwxgmha7hpy54gg0zzi4k9icl"; depends=[boot Hmisc]; }; pseudo = derive2 { name="pseudo"; version="1.4.3"; sha256="0ccf3gz2g7g5y4acpj2qnb39hrghhdganizlddg6rx7al869fffs"; depends=[geepack KMsurv]; }; pseudorank = derive2 { name="pseudorank"; version="0.3.8"; sha256="1nj2cq8v8gj8wg23yrn8v21jwgd572gbz1wplpaxhk5v2ckhf1p0"; depends=[doBy Rcpp]; }; @@ -12140,83 +12589,81 @@ in with self; { psoptim = derive2 { name="psoptim"; version="1.0"; sha256="1yziabkd3h05cfl5jy5l8ji2y3w21acvxsq3inxyh0iwyr8qdkkl"; depends=[]; }; pspearman = derive2 { name="pspearman"; version="0.3-0"; sha256="1l5mqga7b5nvm6v9gbl1xsspdqsjqyhhdn4gc4qlz6ld7fqfq6cx"; depends=[]; }; pspline = derive2 { name="pspline"; version="1.0-18"; sha256="1iwsw52miil1v1yl99mzl28qi8gdjr56rlasmh8faqjlpn9z477p"; depends=[]; }; + pspline_inference = derive2 { name="pspline.inference"; version="1.0.2"; sha256="0va16flm7ls2ypkbyamxz9qcdwn3wj62f5s12rci5i3x34hmmxg8"; depends=[assertthat dplyr magrittr mgcv plotrix plyr reshape2 rlang]; }; pssm = derive2 { name="pssm"; version="1.1"; sha256="0r3d1mzc7bcz238lqq4y518400m2dqm5a1fb9gkfiari1ax099lv"; depends=[abind MASS MHadaptive numDeriv]; }; pssmooth = derive2 { name="pssmooth"; version="1.0.2"; sha256="09x5dhwx40j1fy7bzj0z0lj7sbjlwrqn2b8ph0387prbbp9q2lxs"; depends=[chngpt MASS np osDesign]; }; pstest = derive2 { name="pstest"; version="0.1.3.900"; sha256="1rhd4vgqpr9yq0pc3xql3nfgl30v20ldywapp9n967ky2dja4k0z"; depends=[glmx MASS]; }; psy = derive2 { name="psy"; version="1.1"; sha256="027whr670w65pf8f7x0vfk9wmadl6nn2idyi6z971069lf01wdlk"; depends=[]; }; - psych = derive2 { name="psych"; version="1.9.12.31"; sha256="02i9p6appf15hjdsi58g39bzs9as40f9qhy8m7ki30hd1fz1vrr5"; depends=[lattice mnormt nlme]; }; - psychNET = derive2 { name="psychNET"; version="0.0.4.1"; sha256="1h30ag185h9jw1w9119a9hxp984g2yj85hgi4vcwznjj18ssx377"; depends=[bigtime car corpcor crayon doParallel fastDummies glmnet graphicalVAR gtools Hmisc igraph imputeTS longitudinal MASS Matrix mgm mlVAR ncvreg networktools ordinalNet picasso qgraph reshape2 SparseTSCGM vars]; }; - psychReport = derive2 { name="psychReport"; version="0.7"; sha256="1dapzq20aw9l4r5grfjd2sf14ga3wcxg67pq5fj6q4bcg5dggc9l"; depends=[cli crayon dplyr ez testthat xtable]; }; - psychTools = derive2 { name="psychTools"; version="1.9.12"; sha256="1l1q3l6i40kkbvfjx7nri21jqy9vhdbcc7b5g56a5cqdimkddvkn"; depends=[foreign psych]; }; - psychmeta = derive2 { name="psychmeta"; version="2.3.8"; sha256="1sqcp88kkjdlni3wicjhgw9a8y4a53xr7avbqnq2wzz0n2fa1q29"; depends=[boot cli crayon curl data_table dplyr ggplot2 MASS metafor nor1mix progress purrr reshape2 rlang stringi stringr tibble tidyr tmvtnorm]; }; + psych = derive2 { name="psych"; version="2.0.7"; sha256="13z26yk9nrgviyakkij3jc7mja8wy7al9ripab07mvy21kli79bc"; depends=[lattice mnormt nlme]; }; + psychReport = derive2 { name="psychReport"; version="1.1.0"; sha256="1vwx4qyk74zxddfhyzhi0fzp0ya9278891c8k3asp49lhy8889d0"; depends=[broom cli dplyr ez xtable]; }; + psychTools = derive2 { name="psychTools"; version="2.0.8"; sha256="1g7c8mrwsy0wi0zdqy6l74mvpwlbsigyqnic5fqbx5yfvgd8b645"; depends=[foreign psych]; }; + psychmeta = derive2 { name="psychmeta"; version="2.4.0"; sha256="1l1sl7gbn370pchahwf89b97y1ylj4b2ml9vj386gla7dm0lsv2s"; depends=[boot curl data_table dplyr ggplot2 metafor progress purrr reshape2 rlang stringi stringr tibble tidyr]; }; psycho = derive2 { name="psycho"; version="0.5.0"; sha256="0vcabk9j1yf7nz8fh3xg5rr2ia97mfkka23vbv9jya75dhgd84h2"; depends=[bayestestR dplyr effectsize ggplot2 insight parameters performance scales stringr tidyr]; }; psychometric = derive2 { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; }; psychomix = derive2 { name="psychomix"; version="1.1-8"; sha256="0lfhfcmrk65gkr1yp317b515vmadbcf0vjcnc76d07yp6yfkz5qw"; depends=[flexmix Formula lattice modeltools psychotools]; }; - psychonetrics = derive2 { name="psychonetrics"; version="0.7.1"; sha256="1aj4a0yihiypsvzsrni5qfdjl4h3gffyimrhqcdwfd9wz8q09126"; depends=[abind combinat corpcor dplyr GA ggplot2 glasso IsingSampler lavaan magrittr Matrix matrixcalc mgcv mvtnorm numDeriv optimx pbapply pbv psych qgraph Rcpp RcppArmadillo roptim tidyr ucminf VCA]; }; + psychonetrics = derive2 { name="psychonetrics"; version="0.7.2"; sha256="0kq445bwnv89vrlgwxaakija1hd60d4iy80ws334fjm7hci9793p"; depends=[abind combinat corpcor dplyr GA ggplot2 glasso IsingSampler lavaan magrittr Matrix matrixcalc mgcv mvtnorm numDeriv optimx pbapply pbv psych qgraph Rcpp RcppArmadillo roptim tidyr ucminf VCA]; }; psychotools = derive2 { name="psychotools"; version="0.5-1"; sha256="0nm5ngdkyskkj5akbqavdz8njsa8mr61kzknnn1kkdz6bn6zy6lq"; depends=[]; }; psychotree = derive2 { name="psychotree"; version="0.15-3"; sha256="18lr9dlv5l5fw88n61ch251ddgy1cv6klcj7ba3fg109b86p3bgf"; depends=[Formula partykit psychotools]; }; psychrolib = derive2 { name="psychrolib"; version="2.5.0"; sha256="154bv16fyyyp5zgcrl2ncyqy15ybjnhqmim75pba11sbww7jdfbw"; depends=[Rcpp]; }; psymonitor = derive2 { name="psymonitor"; version="0.0.2"; sha256="09288w2bk5jhnbyj516jqn5qb33yqqg5kqbg6ylqk7anlq2yg2sl"; depends=[doParallel foreach magrittr]; }; - psyosphere = derive2 { name="psyosphere"; version="0.1.5"; sha256="14xnni31p2dh4wfnr2cmr3ymz5phx4506cq2n7ymy4k1587w25g6"; depends=[geosphere ggmap ggplot2 Hmisc lubridate plyr rgdal RgoogleMaps sp]; }; + psyosphere = derive2 { name="psyosphere"; version="0.1.6"; sha256="1hcas3jk2n11lyw1ysmci0sysxf7qg9h2msqqg7q9nqp5gbf90np"; depends=[geosphere ggplot2 Hmisc lubridate plyr rgdal RgoogleMaps sp]; }; psyphy = derive2 { name="psyphy"; version="0.1-9"; sha256="1ndc6sy662wj2qfx7r97crlqjd8fdkfvfy59qmf34bcbzbg33riz"; depends=[]; }; psyverse = derive2 { name="psyverse"; version="0.1.0"; sha256="0q402z884fwnd812bs44xqbsank89risli13v3njhjc337lj29wx"; depends=[yaml yum]; }; pterrace = derive2 { name="pterrace"; version="1.0"; sha256="15k5149jqjy20cck5121zsv2mk63amn5b8qgdlacivri9dpxjns1"; depends=[doParallel foreach plotly TDA viridis]; }; ptest = derive2 { name="ptest"; version="1.0-8"; sha256="1d30a23yknf7xgqj8adgr36pnh9dpffl1v5fq682f26fk3ss30qp"; depends=[quantreg]; }; - ptinpoly = derive2 { name="ptinpoly"; version="2.4"; sha256="1jbj8z7lqg7w1mqdh230qjaydx2yb6ffgkc39k7dx8xl30g00i5b"; depends=[misc3d]; }; - ptmixed = derive2 { name="ptmixed"; version="0.5.2"; sha256="1vi9xh5kv9389hdfq1f3j32ymycsdy6w21lv0h4gg3giwvxwkz3p"; depends=[aod GLMMadaptive lme4 matrixcalc moments mvtnorm numDeriv tweeDEseq]; }; + ptinpoly = derive2 { name="ptinpoly"; version="2.8"; sha256="126chp92ha48agx5i819bzdij79zbgj32msijvaid3zhxjx7qy1j"; depends=[misc3d]; }; + ptmixed = derive2 { name="ptmixed"; version="0.5.4"; sha256="1qr53wn6c3ha8zp51arm7vky35cppr188f345nddgma2m7b06j9x"; depends=[aod GLMMadaptive lme4 matrixcalc moments mvtnorm numDeriv rstudioapi tweeDEseq]; }; pts2polys = derive2 { name="pts2polys"; version="0.1.3"; sha256="0rmgryv0vds20npvaqvvwrhrx0grfcz9qwdy2w3bx945r0chhw39"; depends=[Rcpp]; }; - ptstem = derive2 { name="ptstem"; version="0.0.4"; sha256="0dx677c7qh7rbalsys1n3xv4hjdhd6qypjd1mrggfwz1bd4vig4j"; depends=[dplyr hunspell magrittr rslp SnowballC stringr tidyr tokenizers]; }; ptsuite = derive2 { name="ptsuite"; version="1.0.0"; sha256="1df273p8v6zvhy2jj6imhjigwj77grx6sxqmg0sidxwqny5d1d9c"; depends=[Rcpp]; }; + ptvapi = derive2 { name="ptvapi"; version="1.1.2"; sha256="16qb1avn3hb7yrmn2nal2l47xrq4i01rn6xa2w26h18x6mfrsw9y"; depends=[assertthat digest glue httr jsonlite purrr tibble]; }; ptw = derive2 { name="ptw"; version="1.9-15"; sha256="0ikvzc5vfcs50jl5n49mhk39pcijyfdxd26adgs01h0b50zh1yi2"; depends=[nloptr]; }; ptwikiwords = derive2 { name="ptwikiwords"; version="0.0.3"; sha256="129dad1vy52sf97dqrkwa49vjhv2kvs4pmd5zvq8pxd51hqm6wy9"; depends=[]; }; ptycho = derive2 { name="ptycho"; version="1.1-4"; sha256="1llk3rpk0lf80vwvs23d6dqhgyic3a6sfjc393csj69hh01nrdvc"; depends=[coda plyr reshape2]; }; - pubchunks = derive2 { name="pubchunks"; version="0.2.0"; sha256="119ihi6xi9k3p5lv2qkch2jc2fqmf8h0wi7mqh57asg7n6f0qb6r"; depends=[data_table rcrossref xml2]; }; - pubh = derive2 { name="pubh"; version="1.1.6"; sha256="0788h08nmqxihymb8l46xwjs9j00vmxyim031p29392i8zbqkhc5"; depends=[car dplyr emmeans Epi epiR epitools finalfit ggformula ggplot2 Hmisc lmtest magrittr sandwich sjlabelled sjPlot survival]; }; + pubchunks = derive2 { name="pubchunks"; version="0.2.2"; sha256="0mbyyx8c5pz1z8lj22sk82c5khcp8b536g6qsqqlm772fd28zwc5"; depends=[data_table rcrossref xml2]; }; + pubh = derive2 { name="pubh"; version="1.1.16"; sha256="1ic3qkrr6z22gvyv7xd8f7ji50asb2pmnc9y4c5qd79pzhphd7vx"; depends=[car dplyr emmeans Epi epiR epitools ggformula ggplot2 Hmisc huxtable lmtest magrittr moonBook sandwich sjlabelled sjmisc sjPlot survival tibble tidyselect]; }; publipha = derive2 { name="publipha"; version="0.1.1"; sha256="0ssmkz4bbrp5yvqb2da0i6shzm59ydw2sqkmqkid039782sibjch"; depends=[BH loo Rcpp RcppEigen rstan rstantools StanHeaders truncnorm]; }; pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.16"; sha256="1dcviy347lypbzwwz506d37wy5swla2vjgyqijwc37daic71bnih"; depends=[boot R2HTML RCurl XML]; }; - pubmedR = derive2 { name="pubmedR"; version="0.0.2"; sha256="03ff0n6qrxglclnpd8kz35wn95fghiqahc7qbq2r3xmp7q0xk3zz"; depends=[rentrez XML]; }; + pubmedR = derive2 { name="pubmedR"; version="0.0.3"; sha256="153br94iqayrvvgzrzx0r3ilcrmnznfdnzk8yaii01s8i1g1wxcd"; depends=[rentrez XML]; }; pubtatordb = derive2 { name="pubtatordb"; version="0.1.4"; sha256="0i5azbf75bwxxzpsr5fc2hh22pbwix00hz9dcdpn5jgp2957f7wx"; depends=[assertthat DBI dplyr R_utils readr RSQLite]; }; pullword = derive2 { name="pullword"; version="0.2"; sha256="14rln0nbd4k2cvf18iwvc56776b9g3m3cs67i7fgzabfrgj8y6db"; depends=[RCurl]; }; - pulsar = derive2 { name="pulsar"; version="0.3.6"; sha256="0r1myng3wmirlp1ixqkkzlgv5i0my37irligah3wwfh0cprip1dm"; depends=[Matrix]; }; + pulsar = derive2 { name="pulsar"; version="0.3.7"; sha256="0gafp8mcp34c1j93sixy3413c32vn0xy8vhxm0b8v2mznbizgjbq"; depends=[Matrix]; }; pulseTD = derive2 { name="pulseTD"; version="0.1.0"; sha256="0sdnswinpnm0vvplrh5gl9gx4p03dx175mqxzg5r52rkzd3rfbsr"; depends=[AnnotationDbi Biobase GenomicAlignments GenomicFeatures ggplot2 Rsamtools S4Vectors SummarizedExperiment]; }; pumilioR = derive2 { name="pumilioR"; version="1.3.1"; sha256="1791r5lkr6hafd2rz9f9nfy5vc03c4833f292khvd2cg43sb0bfc"; depends=[RCurl XML]; }; - puniform = derive2 { name="puniform"; version="0.2.1"; sha256="0pizpq3v0jlvl41pqypk5i5ghyg2na8mysf2pcvihx4ha7415i51"; depends=[ADGofTest metafor Rcpp]; }; + puniform = derive2 { name="puniform"; version="0.2.2"; sha256="05bh66k6za5ch9x7k5hvsix88wwciabljx7har7a38y39kzavx6p"; depends=[ADGofTest metafor Rcpp RcppArmadillo]; }; + pureseqtmr = derive2 { name="pureseqtmr"; version="1.2"; sha256="1c2pcci3s949hi8hh0h03mr3m6qw3kvihfglwavx578kjm2qw0xz"; depends=[ggplot2 plyr rappdirs stringr tibble]; }; purge = derive2 { name="purge"; version="0.2.1"; sha256="1faf8mkaxsnj63wnig5rs50hd3j6vzaj0xkdz8kn0j7y2vvshp9p"; depends=[]; }; purging = derive2 { name="purging"; version="1.0.0"; sha256="1b8f87jn6wyh4fp6b1660bd484wcf7xiajdg9dz2594aj1r94qsr"; depends=[MASS]; }; purrr = derive2 { name="purrr"; version="0.3.4"; sha256="1cj091rsjdj2xz16qhynyw72gh5cyhznifcfbrbygndfr4xwksr3"; depends=[magrittr rlang]; }; - purrrlyr = derive2 { name="purrrlyr"; version="0.0.5"; sha256="0rcamyf7d01rpd9izh8xp66j130aqarfbc24p898dqhghb6q1ryq"; depends=[BH dplyr magrittr purrr Rcpp]; }; - purrrogress = derive2 { name="purrrogress"; version="0.1.1"; sha256="1l7wr7jjpang9gx61pfw9qiapsviwpp13kbylmxvw7lz7q0khzcz"; depends=[assertthat glue hms pkgcond purrr R6 rlang testextra]; }; + purrrlyr = derive2 { name="purrrlyr"; version="0.0.6"; sha256="0simzpzm3w9sclg7spnyk4h1r9bxi76z3hmw7m9wv3yiwlp5f6pq"; depends=[BH dplyr magrittr purrr Rcpp]; }; pushbar = derive2 { name="pushbar"; version="0.1.0"; sha256="1gxarv6x32y6ssrhsq3pyihzcvpnnj7bg0jf2cpcr99da78n1d9b"; depends=[jsonlite shiny]; }; pushoverr = derive2 { name="pushoverr"; version="1.0.0"; sha256="1zazrx0szx21ymn7zlkfqkhid0ar8jblnpnf5nycj0p7dbh6d0bd"; depends=[assertthat httr]; }; puzzle = derive2 { name="puzzle"; version="0.0.1"; sha256="073n074irsvn4w1jy5xmr6l24a209kn0ypvf1d2zn3p6yd93wzss"; depends=[dplyr kableExtra lubridate plyr readr readxl reshape reshape2 sqldf tidyverse]; }; - pvaluefunctions = derive2 { name="pvaluefunctions"; version="1.5.0"; sha256="0gch4fkb7fdmqvckanpskfm51kw6dk86i77s74w2qhy3ig6vvi3c"; depends=[ggplot2 scales zipfR]; }; + pvaluefunctions = derive2 { name="pvaluefunctions"; version="1.6.0"; sha256="15hv2vgcgz79mbca17px15n5qy22fsrm5dirdp7s0sv6w03k03sk"; depends=[ggplot2 pracma scales zipfR]; }; pvar = derive2 { name="pvar"; version="2.2.5"; sha256="1a5dxhki5nd5s1d5wwnc1dkg7mdib2s8w1i0l8mdg3f1g3l00klz"; depends=[Rcpp]; }; pvclass = derive2 { name="pvclass"; version="1.4"; sha256="1g6x75qz3xybq1xnik0hzi7mcs0gzzqd3f0iwfkzi5d1zcddnw13"; depends=[Matrix]; }; pvclust = derive2 { name="pvclust"; version="2.2-0"; sha256="0082icm54k2yq60k06qpr92a626k39j2jr0046lva4ylmhxqb4kq"; depends=[]; }; pvsR = derive2 { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; }; pwr = derive2 { name="pwr"; version="1.3-0"; sha256="1kfzy73v3z6ipc3kdfkcjrp4b4p5k54nwk796gqi36srm93hgc2v"; depends=[]; }; pwr2 = derive2 { name="pwr2"; version="1.0"; sha256="0zfv7z5yymw310r1sqm8ivsc2pv6dgk2k4b1axmm92gsaj53cn7p"; depends=[]; }; - pwr2ppl = derive2 { name="pwr2ppl"; version="0.1.1"; sha256="1n34cmsnia6gskwqh5l1czi4cx8vi96nzs100am3vkcxx1xlq7ss"; depends=[afex car dplyr ez lavaan MASS MBESS nlme phia tidyr]; }; + pwr2ppl = derive2 { name="pwr2ppl"; version="0.1.2"; sha256="1d6rlgmwpnbnxjjpfxrxp0iwaqh1vgp8jpnd7iwf76xw30d3gv0v"; depends=[afex car dplyr ez lavaan MASS MBESS nlme phia tidyr]; }; pwrAB = derive2 { name="pwrAB"; version="0.1.0"; sha256="0ifyw40m9gsijw3vm9qb8qk4yydmdixfdpdp45x2hk93j8v61jm1"; depends=[]; }; pwrFDR = derive2 { name="pwrFDR"; version="1.95"; sha256="0xphr4zrn7cav66kw6g52nhc8vvxacvmflvzy32gqy5l7jc89f4q"; depends=[]; }; pwrRasch = derive2 { name="pwrRasch"; version="0.1-2"; sha256="13fr4yfk8aky1vv36pllx673l4lg9q7i661vbyn2zabyizd2rw3b"; depends=[]; }; pwt = derive2 { name="pwt"; version="7.1-1"; sha256="0926viwmwldmzlzbnjfijh00wrhgb0h4h0mlrls71pi5pjfldifa"; depends=[]; }; pwt8 = derive2 { name="pwt8"; version="8.1-1"; sha256="1iig0x90ilzh3hdki0h33qgrra8r94rw4bk1x8y7i6c1may8y0v6"; depends=[]; }; pwt9 = derive2 { name="pwt9"; version="9.1-0"; sha256="0m2df89lali9945avcv4gdjpxch9in7vdd042nx0q8nv0alb4ijd"; depends=[]; }; - pxR = derive2 { name="pxR"; version="0.42.2"; sha256="1q1xwsrs1ch1a1d1clz6sl7vnsyz5wjqivczk5n5d772y4w60bz5"; depends=[plyr reshape2 RJSONIO stringr]; }; + pxR = derive2 { name="pxR"; version="0.42.4"; sha256="1r0ffr5wxf67i1jh67v06vcmifw4hhhasd4aivic94bkvq4sqmn5"; depends=[plyr reshape2 RJSONIO stringr]; }; pxweb = derive2 { name="pxweb"; version="0.9.1"; sha256="00xp7idhsirmpl970yxnxp6xn128jm5kwsmdwhys32wlbd9kzspc"; depends=[checkmate httr jsonlite]; }; pyMTurkR = derive2 { name="pyMTurkR"; version="1.1.4"; sha256="1dv8v01gd79jvqr54rb7k9x8i7v279f82slbmpvsd5r0k9zg2bfq"; depends=[curl reticulate XML]; }; pycno = derive2 { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[maptools rgeos sp]; }; pyinit = derive2 { name="pyinit"; version="1.0.3"; sha256="0sj7r52a53x57ff8b34s6p2y638b85fin0cxrndhpsk392sds0ki"; depends=[robustbase]; }; pyramid = derive2 { name="pyramid"; version="1.5"; sha256="0lakn9knmhqvhrp98sc3hhwd4bilpplxbr5j9bv8w6li0qd3d04a"; depends=[]; }; pysd2r = derive2 { name="pysd2r"; version="0.1.0"; sha256="1dqvgdxj6m683wkjyjhv685xnhl9328bm921zphm1i9p70fahs0n"; depends=[knitr reticulate tibble]; }; - pzfx = derive2 { name="pzfx"; version="0.2.0"; sha256="1h936iplhb3rnfvwvynsh1zfn3j3r0p1shr25wcn1z8axypdbsgi"; depends=[xml2]; }; - qCBA = derive2 { name="qCBA"; version="0.4"; sha256="1230sh9riazx1shhgbkkxfrks7klypj2x1vc173q09hq8bkam2ha"; depends=[arc arules rJava]; }; + pzfx = derive2 { name="pzfx"; version="0.3.0"; sha256="0f8bvwnk44wq8j58rw80b9bclknrh4a3iqdl3p4y26q100cpisgr"; depends=[xml2]; }; qGaussian = derive2 { name="qGaussian"; version="0.1.8"; sha256="02xy35xg4swr1ldnsbywnz2h0ga1pbsivnj0aqmpll7kvwl9qz4c"; depends=[Rcpp robustbase zipfR]; }; qLearn = derive2 { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; }; qMRI = derive2 { name="qMRI"; version="1.2"; sha256="10x59g8awxjib5j5mc1yd5wsibk3z6ki6zifxsg8azl0zblxbscf"; depends=[adimpro aws awsMethods oro_nifti stringr]; }; - qVarSel = derive2 { name="qVarSel"; version="1.0"; sha256="13x2hnqjsm0ifzmqkkl9ilhykrh80q04lhlkkp06hkysmh5w9rkx"; depends=[lpSolveAPI Rcpp]; }; - qad = derive2 { name="qad"; version="0.1.2"; sha256="0xpzv1cliilrc1v4w6k848lphvdamr9ps63zh27bs3gkwncr47qa"; depends=[copula data_table doParallel foreach ggplot2 plyr viridis]; }; + qad = derive2 { name="qad"; version="0.2.0"; sha256="13yz1aw394n4l4ys5bmmynm821ph4ggxdviv6ky3hq45y494rdvh"; depends=[copula data_table doParallel dplyr foreach ggExtra ggplot2 viridis]; }; qap = derive2 { name="qap"; version="0.1-1"; sha256="0d2d1ni1camixyi45lfy00f4pn3p063k7bsi8gj5scp6n15mdgb0"; depends=[]; }; qat = derive2 { name="qat"; version="0.74"; sha256="04n1jnbkf9dzafjh1n5d4q9p7hvyhnr63nmgl51jqxcf3nan5rlx"; depends=[boot fields gdata gplots moments ncdf4 XML]; }; qboxplot = derive2 { name="qboxplot"; version="0.2"; sha256="07f05n7zxgwyxg2r5fz691ra64m218w9v874xfzjx6671c40y1q2"; depends=[]; }; @@ -12233,15 +12680,16 @@ in with self; { qdm = derive2 { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; }; qfasar = derive2 { name="qfasar"; version="1.2.1"; sha256="14370bmq4qx5j02va13wz52m2lgl4vb992p9587z9v2sxl1v4jjg"; depends=[Rsolnp]; }; qgam = derive2 { name="qgam"; version="1.3.2"; sha256="0lks2cj0p7irp1i01756v1l7i26d7alax1fbkc20qd6wpz840fi7"; depends=[doParallel mgcv plyr shiny]; }; - qgcomp = derive2 { name="qgcomp"; version="2.3.0"; sha256="1ik81vj0brwnzvaij25jq4jchhqqjayckihdjh1l1zy3vfphla5m"; depends=[arm future future_apply generics ggplot2 gridExtra pscl survival tibble]; }; - qgg = derive2 { name="qgg"; version="1.0.3"; sha256="0ylpsvhvkznw1b280im026mlwa5bydh3gdki72a7rr2vpjnbgxm2"; depends=[data_table MASS MCMCpack statmod]; }; + qgcomp = derive2 { name="qgcomp"; version="2.4.0"; sha256="0ddivv3y8y1984pkiw8346qy6ca90vazir3rvrmzvl88xz6ydvg1"; depends=[arm future future_apply generics ggplot2 gridExtra markdown pscl survival tibble]; }; + qgg = derive2 { name="qgg"; version="1.0.4"; sha256="1xyviy73jl76bpv5izlkgf171qrypgv2wm5mi3s06cb7md8psrkb"; depends=[data_table MASS MCMCpack statmod]; }; qgraph = derive2 { name="qgraph"; version="1.6.5"; sha256="0pwys9irxvp0ap158drplyypkplbmwqinv0fmlsblk7q875cr592"; depends=[abind BDgraph colorspace corpcor d3Network dplyr fdrtool ggplot2 ggraph glasso gtools Hmisc huge igraph jpeg lavaan Matrix pbapply plyr png psych Rcpp reshape2 tidygraph]; }; + qgshiny = derive2 { name="qgshiny"; version="0.1.0"; sha256="0ydhwg4abn8n9pwnjnwf1n1k854zw31z8f2splzdm5j279lsjg3r"; depends=[rmarkdown shiny]; }; qgtools = derive2 { name="qgtools"; version="2.0"; sha256="1gj7vbam53yr2rnxzfxng1p107bjcyjmyj47cxyzaiv19pznkbmw"; depends=[]; }; qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; }; qicharts = derive2 { name="qicharts"; version="0.5.5"; sha256="0bl1f64b5n8q9jhzh3rqfyh9613qiy9mhcy2xsn16jyrj4hmj0jd"; depends=[ggplot2 lattice latticeExtra scales]; }; qicharts2 = derive2 { name="qicharts2"; version="0.6.1"; sha256="14s8fji9hmsi3675n6nsy0mh1myj54bm18fssax2h0s96742lz79"; depends=[ggplot2 scales]; }; qif = derive2 { name="qif"; version="1.5"; sha256="12azs7c0anpd71d5663y1jrhirry6cr78wislp4fk64hmsbx7sx4"; depends=[MASS]; }; - qiitr = derive2 { name="qiitr"; version="0.1.0"; sha256="1p0mcwgzvbib20l05wrnshkqx99vwr69dgy15dfwp75skyy5l797"; depends=[httr jsonlite purrr rstudioapi]; }; + qiitr = derive2 { name="qiitr"; version="0.1.1"; sha256="0qbqx7g4np2ygyxiqmq5cww1az6ijjx6na6b1mp4ywmyxkjg3k29"; depends=[httr jsonlite purrr rstudioapi]; }; qkerntool = derive2 { name="qkerntool"; version="1.19"; sha256="14inry2hqvkmy0y2y3cl75ri4vri0hirv98gw2rymny69lia5x0s"; depends=[class]; }; qlcMatrix = derive2 { name="qlcMatrix"; version="0.9.7"; sha256="0iqkcvvy8rxlk0s83sjq57dd6fadb18p5z31lzy0gnzv1hsy1x8y"; depends=[docopt Matrix slam sparsesvd]; }; qmap = derive2 { name="qmap"; version="1.0-4"; sha256="02xvq1mw83gln7phacbi3vhkvb100crggbldv13mhwq3wjnmg5k2"; depends=[fitdistrplus]; }; @@ -12251,6 +12699,7 @@ in with self; { qoma_smuggler = derive2 { name="qoma.smuggler"; version="0.0.1"; sha256="03p9i0kr6i3adpb9lcszcmdr9p26nfy7f8hw2sbydazglaw4hscr"; depends=[lubridate rhli tibble]; }; qpcR = derive2 { name="qpcR"; version="1.4-1"; sha256="1r01q7jv3w59yx1gc0qw91rq7rvdhqsi8y57sqqkmwyqfw2x2vsv"; depends=[MASS Matrix minpack_lm rgl robustbase]; }; qpdf = derive2 { name="qpdf"; version="1.1"; sha256="03lnfncw8qd1fwfyqh1mjvnsjr3b63wxbah0wp5g7z7gba90dwbi"; depends=[askpass curl Rcpp]; }; + qpmadr = derive2 { name="qpmadr"; version="0.1.0"; sha256="19q9xwkaklkvxvwmnhn3dm2rzcpwl9swygmzlcqa8008m019film"; depends=[checkmate Rcpp RcppEigen]; }; qqman = derive2 { name="qqman"; version="0.1.4"; sha256="1v9s9ag1hfb47py87wb2nad4mbsfx35832hdmrh5kxrb2f11zl1s"; depends=[calibrate]; }; qqplotr = derive2 { name="qqplotr"; version="0.0.4"; sha256="1zy7mlnll0infr2las5c28vi5da04rm869dpccwcws1467mhys3k"; depends=[dplyr ggplot2 knitr MASS robustbase]; }; qqtest = derive2 { name="qqtest"; version="1.2.0"; sha256="1v0qbbp2dpqflpg7yif7hipwdbz27isfyfwcia1ln7z0nnvkjm8c"; depends=[]; }; @@ -12268,13 +12717,15 @@ in with self; { qrmtools = derive2 { name="qrmtools"; version="0.0-13"; sha256="1pr0q0wh3xjy3y59nkbpqfkakagbank3b31150rlxy72hkf52g1y"; depends=[ADGofTest lattice Quandl quantmod rugarch xts zoo]; }; qrng = derive2 { name="qrng"; version="0.0-7"; sha256="1dw1qqajxavlnfyh6xn58069fpfza28x1xjzd3diqlcxxlb4hjaf"; depends=[copula randtoolbox]; }; qrnn = derive2 { name="qrnn"; version="2.0.5"; sha256="0ligz67kbfg5cmvacnb7y0ms1v0c7mbvbcfsxyfiz543ppl3xn1v"; depends=[]; }; - qs = derive2 { name="qs"; version="0.21.2"; sha256="1i4xrm9vz8ffl4mbw1qmgwkcm3j6ajw25ilj08n87ghy798pyab3"; depends=[RApiSerialize Rcpp]; }; + qs = derive2 { name="qs"; version="0.23.2"; sha256="06cc9qnnsdc5w76ip3326zcmny4sli7n10yc4pkcv7x5l6r96ddz"; depends=[RApiSerialize Rcpp stringfish]; }; qsort = derive2 { name="qsort"; version="0.2.3"; sha256="1xvp29dijfa2207wyw3z09rmffn61fngfy0f00qjk284n1jnnvrg"; depends=[cowplot ggplot2 gridExtra purrr]; }; qsub = derive2 { name="qsub"; version="1.1.0"; sha256="0i52bibc782k09f5hp3ic9ll14fsrwjnkdxlb0mhkjvsqm7m5hc5"; depends=[dplyr glue pbapply processx purrr random readr ssh stringr tidyr]; }; - qtbase = derive2 { name="qtbase"; version="1.0.14"; sha256="1pcgjycq61x9h52sqr6fz83qjnlpbawvpavnn9hyw2b7jlv3nwfd"; depends=[]; }; qte = derive2 { name="qte"; version="1.3.0"; sha256="0x65n2qyq1py0nrachxkqd273mywkw433ai5x6ni3ak4ckbp3g66"; depends=[BMisc formula_tools ggplot2 Hmisc knitr msm pbapply quantreg texreg]; }; qtl = derive2 { name="qtl"; version="1.46-2"; sha256="0rbwcnvyy96gq1dsgpxx03pv423qya26h6ws5y0blj3blfdmj83a"; depends=[]; }; - qtl2pleio = derive2 { name="qtl2pleio"; version="1.2.3"; sha256="0ihlp6glsw4pk97vpqlcbd6zmg0qww3i19c1b76vx1wkazjg6pd8"; depends=[dplyr gemma2 ggplot2 magrittr MASS Matrix Rcpp RcppEigen rlang stringr testthat tibble]; }; + qtl2 = derive2 { name="qtl2"; version="0.22-11"; sha256="0dfdzjylqzc92dcszawc8cyinxccjm3p36v9vcq9ma818pqcanmr"; depends=[data_table jsonlite Rcpp RcppEigen RSQLite yaml]; }; + qtl2convert = derive2 { name="qtl2convert"; version="0.22-7"; sha256="0i2s4hsab5fvxdjapgwchs1shi658ir06i1dqlqi79q0avdjw4l0"; depends=[qtl qtl2 Rcpp]; }; + qtl2fst = derive2 { name="qtl2fst"; version="0.22-7"; sha256="121rf6bqva7rk6ab3fxlil131fb7p0bffq6yq4vgs50qjlayxyd2"; depends=[fst qtl2]; }; + qtl2pleio = derive2 { name="qtl2pleio"; version="1.3.0"; sha256="07dx8fslsl6x5841dxnmhmi9ra806gnjr4inc7n13hpy8iwpcsrb"; depends=[dplyr furrr gemma2 ggplot2 magrittr MASS Matrix Rcpp RcppEigen rlang testthat tibble]; }; qtlDesign = derive2 { name="qtlDesign"; version="0.941"; sha256="138yi85i5xiaqrns4v2hw46b731bdgnb301wg2h4cfrxvrw4l0d5"; depends=[]; }; qtlbook = derive2 { name="qtlbook"; version="0.18-8"; sha256="1c849xy2ki7niddajv5wnsm0zdp5381w8zm9lc8rvkdbs2v6rhf4"; depends=[]; }; qtlc = derive2 { name="qtlc"; version="1.0"; sha256="17ij4alx4qg556b5kq7qsjygj5jf8iyx1f0v52pvx1z2sm6nppww"; depends=[plot3D rgl tiff]; }; @@ -12282,7 +12733,6 @@ in with self; { qtlhot = derive2 { name="qtlhot"; version="1.0.4"; sha256="0gf0fsq91g830vqg5kz01zznm40qpjncy964ccvmms3i6d3hxd9m"; depends=[corpcor mnormt qtl]; }; qtlmt = derive2 { name="qtlmt"; version="0.1-6"; sha256="023h60z8d05832l2g7mg776hfjb0i7xpvhz3i899rc3h5pgjd94c"; depends=[]; }; qtlnet = derive2 { name="qtlnet"; version="1.5.4"; sha256="0jdf3hyzas0lyv2v4gqai9mhh7218a1mvm0nlwv9hfdbij0hi84v"; depends=[graph igraph pcalg qtl sem]; }; - qtpaint = derive2 { name="qtpaint"; version="0.9.1"; sha256="08x7qcxwkaclwv1p4s9a5k95x35hzp69whiihkakjv5blm83m3g9"; depends=[qtbase]; }; quRan = derive2 { name="quRan"; version="0.1.0"; sha256="108d797l9ggggc5b61pl7f6avzknmnnib2ys5vrg385zfbx9srvw"; depends=[]; }; quad = derive2 { name="quad"; version="1.0"; sha256="0fak12l19f260k0ygh6zimx8dabzsv7a9i2njw8hnfcs3ndffhv5"; depends=[PearsonDS]; }; quadmatrix = derive2 { name="quadmatrix"; version="0.1.0"; sha256="0nngrvvbalmrr6g9bq9f5qrllvwfq5p1b9yhs4zb098s3wga8jms"; depends=[geigen matrixcalc]; }; @@ -12293,29 +12743,31 @@ in with self; { qualCI = derive2 { name="qualCI"; version="0.1"; sha256="09mzsy5ryyrn1gz9ahrh95cpfk7g09pmjjy0m82fh4xc7j5w6kpf"; depends=[combinat]; }; qualV = derive2 { name="qualV"; version="0.3-3"; sha256="1yyqk223ydcc0125gsn33a4mcdp8bd76fpn8kj9bfz9g78b8dqmx"; depends=[KernSmooth]; }; qualityTools = derive2 { name="qualityTools"; version="1.55"; sha256="1c2p78dhwqvzb2k01dvwb41a6hlr2iwpw6fv91036x30rphjzb88"; depends=[MASS Rsolnp]; }; - qualmap = derive2 { name="qualmap"; version="0.1.1"; sha256="1z085zyqxnizpx4y1891shhijs2a9gg5ap800ryvfxncg6gk35wa"; depends=[dplyr glue leaflet purrr rlang sf]; }; + qualmap = derive2 { name="qualmap"; version="0.2.0"; sha256="04kg4vz18zvkd6m37ng70ggi93pynwxi2ahh4n7n78f4rqa1d3nz"; depends=[dplyr glue leaflet purrr rlang sf]; }; qualpalr = derive2 { name="qualpalr"; version="0.4.3"; sha256="1hlssqj2129796d00gnip3ih5b705qasw0hkj25xfz7xak0vdbkm"; depends=[assertthat randtoolbox Rcpp RcppArmadillo RcppParallel]; }; - qualtRics = derive2 { name="qualtRics"; version="3.1.2"; sha256="18pl7ni5m0xb1rkpw118cxcbhbwqqvq4cm4wx1jddknn4kx7cjbx"; depends=[assertthat dplyr httr jsonlite purrr readr rlang sjlabelled stringr tibble]; }; + qualtRics = derive2 { name="qualtRics"; version="3.1.3"; sha256="14dplrrgliix2x6c61l53y1m0jq0k5q7dl72s5mypz916v4r4lhz"; depends=[assertthat dplyr httr jsonlite lifecycle purrr readr rlang sjlabelled stringr tibble]; }; qualvar = derive2 { name="qualvar"; version="0.2.0"; sha256="1c7b7lcyq2l46sslk185r6xfh5fb35z9qihrhnh294sw1k52bffa"; depends=[]; }; qualypsoss = derive2 { name="qualypsoss"; version="1.0.0"; sha256="1pvf9b9yw8317wnh1x1jkmwl4cl0r9q7npfw0xzgbs8mfpl9j2ah"; depends=[doParallel foreach MASS mvtnorm]; }; quantable = derive2 { name="quantable"; version="0.3.6"; sha256="15q4phc2j7aihl8f4qzpdwxcvshq2cfzkfcxc8k4qypsxk9a00sb"; depends=[caret dplyr e1071 ggplot2 ggrepel gplots Matrix plyr pROC RColorBrewer readr reshape2 rlang scales stringr tibble tidyr]; }; - quanteda = derive2 { name="quanteda"; version="2.0.1"; sha256="0pym6vdzqbkyj87m3pla229092xvvx4j830x67qflxzzdmc9dzhz"; depends=[data_table extrafont fastmatch ggplot2 ggrepel jsonlite magrittr Matrix network proxyC Rcpp RcppArmadillo RcppParallel sna SnowballC stopwords stringi xml2 yaml]; }; + quantdates = derive2 { name="quantdates"; version="1.0"; sha256="1hyds8rwr1yg740aq4w5fqjrwdf3dl4phf8mj8qsgbb7i0wbbf3q"; depends=[lubridate]; }; + quanteda = derive2 { name="quanteda"; version="2.1.1"; sha256="1wlrd7g2b459pnkqhihxhn74f37py1c9pxrdzp5xzp4mnbdxcsj8"; depends=[data_table digest extrafont fastmatch ggplot2 ggrepel jsonlite magrittr Matrix network proxyC Rcpp RcppArmadillo RcppParallel sna SnowballC stopwords stringi xml2 yaml]; }; quanteda_textmodels = derive2 { name="quanteda.textmodels"; version="0.9.1"; sha256="04c43hk6yx06m11s01aw0sqjd2yip7l7wzlbif600hvwxgs74knn"; depends=[ggplot2 LiblineaR Matrix quanteda Rcpp RcppArmadillo RcppParallel RSpectra RSSL SparseM stringi]; }; quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; }; quantileDA = derive2 { name="quantileDA"; version="1.1"; sha256="0jbklxsy33j7clcw97qq4ijwkrb94v2m11gjcfa38vplfxm9913q"; depends=[]; }; - quantities = derive2 { name="quantities"; version="0.1.3"; sha256="0crcwcr53bpqj07q5hvqkpq1sg9ikwz3nig2ifshqq5g2a3m57qs"; depends=[errors Rcpp units]; }; + quantilogram = derive2 { name="quantilogram"; version="2.1.1"; sha256="07mvgbk5qhkaihk2dn5c8cfac2xd9hfglh284sg4jkrkq0cfgrl8"; depends=[np quantreg SparseM]; }; + quantities = derive2 { name="quantities"; version="0.1.5"; sha256="1ic44xm7mqj428nd3hqv80nhdzsda87yp9ifxayf46yrxi8p6khf"; depends=[errors Rcpp units]; }; quantkriging = derive2 { name="quantkriging"; version="0.1.0"; sha256="0v6kckgzhgsn3158sc06xszdhmk8sfny10j1qyppxsl2hk89n8jf"; depends=[ggplot2 hetGP Matrix reshape2]; }; quantmod = derive2 { name="quantmod"; version="0.4.17"; sha256="1ss441rwlr88kz212m0wgx0hwgwi41rhy1jncg2lgqzqfvr5dzqa"; depends=[curl TTR xts zoo]; }; quantoptr = derive2 { name="quantoptr"; version="0.1.3"; sha256="0f9vy9yhya4wpya8n345s6n7a5sb29chdkl5fz6dwa31lp1mvvj3"; depends=[quantreg Rdpack rgenoud stringr]; }; - quantreg = derive2 { name="quantreg"; version="5.55"; sha256="1zjc8p95kb0ypxa6nxp0lkdq8armkjmmhf8484m25n5f14a59qfb"; depends=[Matrix MatrixModels SparseM]; }; + quantreg = derive2 { name="quantreg"; version="5.61"; sha256="0kby1crnzkdg5sczwqapfpkr58apyzrrx85khigcqggmhhwl44wk"; depends=[conquer Matrix MatrixModels SparseM]; }; quantreg_nonpar = derive2 { name="quantreg.nonpar"; version="1.0"; sha256="1f9120awnkwsgdiqg98lg7xs5l4y80930869x6k9q76595r5m92k"; depends=[fda mnormt quantreg Rearrangement]; }; quantregForest = derive2 { name="quantregForest"; version="1.3-7"; sha256="0lk7r02i6zpx9sdl2rp0r7fc3a84s8qhg49nh2x7k3vxwa095pjz"; depends=[randomForest RColorBrewer]; }; quantregGrowth = derive2 { name="quantregGrowth"; version="0.4-3"; sha256="0q2yk51hcn7jnvh14nxa7szfj4pr9grh5rdfwazaziilbwqdmw4f"; depends=[quantreg]; }; quantregRanger = derive2 { name="quantregRanger"; version="1.0"; sha256="1a9q2prr790bpw6s0y5ni5ppd3vqkjr0v4nqp6ywcj5n3sk69pvx"; depends=[ranger Rcpp]; }; - quantspec = derive2 { name="quantspec"; version="1.2-2"; sha256="1mn5r575hdffy1znd98njrms2pz84z8k4bv6qmbwgqwvh8pn10rg"; depends=[abind quantreg Rcpp snowfall zoo]; }; + quantspec = derive2 { name="quantspec"; version="1.2-3"; sha256="0ifwq2jmvxhpijz9yd9hffkff6ixcliaqkp9ispp9k1b8icwi8zn"; depends=[abind quantreg Rcpp snowfall zoo]; }; quarrint = derive2 { name="quarrint"; version="1.0.0"; sha256="13fdmmrgn23xd9vpywmcl7pf729gmcxjfl1wxs30axsbp4h1s6rk"; depends=[neuralnet]; }; - queryparser = derive2 { name="queryparser"; version="0.2.0"; sha256="1fsp64rm4jch2jjw7czw9qmwb4f3s46avbf3z3gpvcfdq4aw65kb"; depends=[]; }; - questionr = derive2 { name="questionr"; version="0.7.0"; sha256="1cschww3g2jhrfh87bxcaaig84yr0zcj0virmpx033yal606hmn4"; depends=[classInt highr htmltools labelled miniUI rstudioapi shiny]; }; + queryparser = derive2 { name="queryparser"; version="0.3.0"; sha256="10p81cr1zzq4bna8x302280v5n8ddm454zybzh8mi2jd3sh4rmbz"; depends=[]; }; + questionr = derive2 { name="questionr"; version="0.7.1"; sha256="1rhb4kj6x6ngryqyj68zglcb7nmrmsq9ikndyxqpbmqx2s67b22c"; depends=[classInt haven highr htmltools labelled miniUI rstudioapi shiny styler]; }; queuecomputer = derive2 { name="queuecomputer"; version="0.8.3"; sha256="0ravk2bxzq3zhk6mmh6iv11ql3bkpp2318vvrl39ghm5bh6pp6mg"; depends=[dplyr Rcpp RcppArmadillo tidyr]; }; queueing = derive2 { name="queueing"; version="0.2.12"; sha256="0hw1ykm24cjpfwh7ac7fjf7mhc59mq8wy2g07aacpy5ibwi8bbsf"; depends=[]; }; quhomology = derive2 { name="quhomology"; version="1.1.1"; sha256="0wiih00zk4682wy1r4nyifh76h5bnvl3f785wjzmrwylnfy951l3"; depends=[MASS numbers]; }; @@ -12328,22 +12780,25 @@ in with self; { quickregression = derive2 { name="quickregression"; version="0.2"; sha256="1z0sspi8q7dvgxqbj5na56v458pv6jhxrssnm6j23156dchgw39h"; depends=[car]; }; quiddich = derive2 { name="quiddich"; version="1.0.0"; sha256="10kiyn1all58klyygmz6zw0w9nfl9vq19qybmkqh410rd5ryjz3p"; depends=[ape]; }; quietR = derive2 { name="quietR"; version="0.1.0"; sha256="1f923dllhchgf49bp2d9186v3cxzdya6i56ww6cj0n0mh8gfi27z"; depends=[]; }; - quint = derive2 { name="quint"; version="2.0.1"; sha256="0a6ibaz9x4nba3kn7gbnz0f53sv3489zpa2vvywq1g9dx8nm7r3v"; depends=[Formula partykit rpart]; }; + quint = derive2 { name="quint"; version="2.1.0"; sha256="0rivacjccr3gdw5w4mzdjyrhw4lpww9665pwyrm845w165h9bi53"; depends=[Formula partykit rpart]; }; quokar = derive2 { name="quokar"; version="0.1.0"; sha256="1qnl3x1aa665xpyb3ac07xrnnjdwbmj645p103144k5is5b8likc"; depends=[ald ALDqr bayesQR dplyr ggplot2 GIGrvg gridExtra knitr magrittr MCMCpack purrr quantreg robustbase tidyr]; }; quotedargs = derive2 { name="quotedargs"; version="0.1.3"; sha256="11cswg9bmddsl1axxcdz11flq46p1zkpv022526f2vgl4qsprwbm"; depends=[]; }; - qut = derive2 { name="qut"; version="2.1"; sha256="1wkk4c4f10a1whrspr5yalp7flcxckzxlx187ymmpnz7qcncz619"; depends=[flare glmnet lars Matrix]; }; qvcalc = derive2 { name="qvcalc"; version="1.0.2"; sha256="0banzv78kb53ybfbh1hmgx7kxvpbbdxzg4dsn7vrwhmxs72srkch"; depends=[]; }; qwraps2 = derive2 { name="qwraps2"; version="0.4.2"; sha256="14h9xwv6x5lci17hg048a6n0cp3d2rif4v0g7dr05w504h157kw9"; depends=[dplyr ggplot2 knitr magrittr Rcpp RcppArmadillo rlang tidyr]; }; r_blip = derive2 { name="r.blip"; version="1.1"; sha256="1p33g6i6fq9c27d5ix9nd8prv90i4hrf91x34bldlw8041sjqxm0"; depends=[bnlearn foreign]; }; r2d2 = derive2 { name="r2d2"; version="1.0-0"; sha256="1zl0b36kx49ymfks8rm33hh0z460y3cz6189zqaf0kblg3a32nsi"; depends=[KernSmooth MASS sp]; }; r2d3 = derive2 { name="r2d3"; version="0.2.3"; sha256="0v612mbzdjr8cq1ffall9hagbwxfv7fh963x8f0w5r84v1m3y2bl"; depends=[htmltools htmlwidgets jsonlite rstudioapi]; }; r2dRue = derive2 { name="r2dRue"; version="1.0.4"; sha256="1apdq7zj5fhs349wm9g6y06nn33x24pg3gdp4z1frd18qlacf8z5"; depends=[matrixStats rgdal sp]; }; - r2dii_data = derive2 { name="r2dii.data"; version="0.0.3"; sha256="0vsl1kpprvy0q6yr0ky132qnjdgc8j6pjkwzy8r4g5igqbp07d4d"; depends=[]; }; - r2dii_match = derive2 { name="r2dii.match"; version="0.0.1"; sha256="0qk0yxqhyw4xxllbm62ayzphh6zg0gswyzm2wn6y4qqds9k70v3r"; depends=[dplyr glue magrittr purrr r2dii_data rlang stringdist stringi tibble tidyr tidyselect]; }; + r2dictionary = derive2 { name="r2dictionary"; version="0.1"; sha256="0assylz2ih96l4jily76hp524h5xbnc27ln8yjvk9c4q88yr8xfy"; depends=[rstudioapi stringr]; }; + r2dii_analysis = derive2 { name="r2dii.analysis"; version="0.0.1"; sha256="03czv6rql2id74qawjcvc4b9wj3bxci6hg5lq4r37w6xn7y7ls19"; depends=[dplyr magrittr rlang tidyr]; }; + r2dii_data = derive2 { name="r2dii.data"; version="0.1.2"; sha256="0qrpvjf1brf2am2bjddnlvhwc9kj3vwphg5nmal29m1pfc59z36g"; depends=[]; }; + r2dii_match = derive2 { name="r2dii.match"; version="0.0.4"; sha256="01h65la79cqcpmwkwm2sb1kivqz7qy200zagd8g5ajy6vk8dy2ch"; depends=[data_table dplyr glue magrittr purrr r2dii_data rlang stringdist stringi tibble tidyr tidyselect]; }; r2glmm = derive2 { name="r2glmm"; version="0.1.2"; sha256="0iim92blpa59vgz97c2pi05yhbjjmaffdbkbmk5kplfb2vmazgiy"; depends=[afex data_table dplyr ggplot2 gridExtra lmerTest MASS Matrix mgcv pbkrtest]; }; r2pmml = derive2 { name="r2pmml"; version="0.24.0"; sha256="0fl2kh1b7rvghschadsdp12za0r16xpak29f0w7dh38i5sw5scrk"; depends=[]; }; r2rtf = derive2 { name="r2rtf"; version="0.1.1"; sha256="04612jnmqrdl3ps66zxj515fbnvaxzcw8bl9dg2gjqh7lr23a0dj"; depends=[stringr]; }; + r2shortcode = derive2 { name="r2shortcode"; version="0.1"; sha256="03djy8m146k31xgvwcbrd1nzwj4wdlvvwzgviv80kskgr6ld9jrj"; depends=[magrittr stringr]; }; r2sundials = derive2 { name="r2sundials"; version="5.0.0-7"; sha256="11l8z7h0gm71yqns2blrd26p084gcdc4x1xwv0knp8830xqjdsmw"; depends=[Rcpp RcppArmadillo rmumps]; }; + r3PG = derive2 { name="r3PG"; version="0.1.2"; sha256="1awmxs0173x09rrqbn7h4ni068kxzb09jr70zyh0659jnf4zx4dd"; depends=[]; }; r4lineups = derive2 { name="r4lineups"; version="0.1.1"; sha256="1p0dnrp21zx1l9lqx01jnq54d5ppb8siibv47i4gsp7c7db9ymxc"; depends=[boot dplyr ggplot2 ggrepel here magick magrittr pROC psych purrr]; }; r4ss = derive2 { name="r4ss"; version="1.36.1"; sha256="03xin7avdbg5ayrcdbw5rx9sh6ingjq2kv3405h01vqf1jhkfsxk"; depends=[coda corpcor gdata gplots gtools kableExtra pso truncnorm]; }; r511 = derive2 { name="r511"; version="0.1.1"; sha256="1njsnjf0746cv6x7fznq4cg556fczqcfawwb869r3w9zv0zj1iy9"; depends=[assertthat dplyr httr tibble xml2]; }; @@ -12353,9 +12808,11 @@ in with self; { rAmCharts = derive2 { name="rAmCharts"; version="2.1.13"; sha256="1c9gz7jmkh8gfaq8lmcb66kavdldnlc3x1mc1c72di8zxcpgzprc"; depends=[data_table htmltools htmlwidgets knitr pipeR yaml zoo]; }; rAverage = derive2 { name="rAverage"; version="0.5-8"; sha256="09yap3qv02k5nidi6a4png9xa5yy7cb8hg8s2dq99wnc88s42d26"; depends=[]; }; rAvis = derive2 { name="rAvis"; version="0.1.4"; sha256="0svplnrn8rrr59v04nr1pz7d5r4dr1kdl0bd3kg8c3azxv47mxbp"; depends=[gdata maptools raster RCurl rgdal scales scrapeR sp stringr XML]; }; + rBMF = derive2 { name="rBMF"; version="1.0"; sha256="10dg47yzn696aqx4192nrs5m92z8kkkpk0z1j8pak33c6s2swc51"; depends=[Matrix Rcpp]; }; rBayesianOptimization = derive2 { name="rBayesianOptimization"; version="1.1.0"; sha256="194j445nirvvkz880ax0zw2q1mkiy0khdfjl7bwiwj8knhhvkrhw"; depends=[data_table foreach GPfit magrittr]; }; rBeta2009 = derive2 { name="rBeta2009"; version="1.0"; sha256="0ljzxlndn9ba36lh7s3k4biim2qkh2mw9c0kj22a507qbzw1vgnq"; depends=[]; }; - rCAT = derive2 { name="rCAT"; version="0.1.5"; sha256="03nbhcfgawz0a8h5fr51aqn1n9v7kprwvafxzjb2pb8751rica2d"; depends=[pracma rgdal sp]; }; + rBiasCorrection = derive2 { name="rBiasCorrection"; version="0.2.1"; sha256="1408fiiv9q807yarm40dzybq8p8y1fhkfs8hpimszkcljp2h8hqg"; depends=[data_table future future_apply ggplot2 ggpubr magrittr nls2 polynom]; }; + rCAT = derive2 { name="rCAT"; version="0.1.6"; sha256="09jyjjbhpm44wrism3zgg56m01yimlcm3xks8g0cq36lsrclcigp"; depends=[pracma rgdal sp]; }; rCBA = derive2 { name="rCBA"; version="0.4.3"; sha256="10rc08gwsf15f4lci8bbgwpwj8n7k1m23hxk633v68g9amla5nvx"; depends=[arules R_utils rJava TunePareto]; }; rCMA = derive2 { name="rCMA"; version="1.1"; sha256="0dswshg80hbgcib5x9w791sh71q5s4435q8sm9dh170v4ngbax0w"; depends=[]; }; rCRM = derive2 { name="rCRM"; version="0.1"; sha256="01xxkrwd0iwhmq8dshgbn84qi6kky757y01alqrk0pkq2n8ghms4"; depends=[Rcpp RcppEigen]; }; @@ -12365,12 +12822,14 @@ in with self; { rDNAse = derive2 { name="rDNAse"; version="1.1-1"; sha256="0cl51q61kwvdsm5f49cjjbzggqam1fnr6gp15cmy6m2yahyxg1lk"; depends=[]; }; rDecode = derive2 { name="rDecode"; version="0.1.0"; sha256="1d0rrhycw9anhvx6czz7axkzhzqprdgi9sqfglmc962zf1x3hmn2"; depends=[]; }; rDotNet = derive2 { name="rDotNet"; version="0.9.1"; sha256="18cd5373pdfi1x958llb4cgjqdi1fb7h7m5nkdwcd4xw9hxhinzd"; depends=[Rcpp testthat]; }; + rEDM = derive2 { name="rEDM"; version="1.5.0"; sha256="0mrmh4c95p0h8rf8npc4cs3q5dkcsw5wziwz3mkcynbkvnn8v2n1"; depends=[Rcpp RcppThread]; }; rEMM = derive2 { name="rEMM"; version="1.0-11"; sha256="0ynjn10gcmxs8qnh6idb34ppmki91l8sl720x70xkzcqpahy0nic"; depends=[cluster clusterGeneration igraph MASS proxy]; }; rENA = derive2 { name="rENA"; version="0.2.0.1"; sha256="0sljnrhc710xbcdbsjx1rqrivbklgcnh7l4nqpnxdknvrxz6ky5y"; depends=[data_table doParallel foreach magrittr plotly R6 Rcpp RcppArmadillo scales]; }; rFDSN = derive2 { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; }; - rFIA = derive2 { name="rFIA"; version="0.2.1"; sha256="1jg44m2m04s5pk5nkqk0hkz2rn96b8ys9j8dzby3qj0f1bx2bixs"; depends=[bit64 data_table dplyr gganimate ggplot2 progress sf sp stringr tidyr]; }; - rFerns = derive2 { name="rFerns"; version="3.0.0"; sha256="0z12201y1b9d3rd02k4y64hpnlrgkg7pi1jpzsh1br4pchdf7rrm"; depends=[]; }; - rGEDI = derive2 { name="rGEDI"; version="0.1.6"; sha256="0w046fszs8738h378rp2wnm9jk9q5w1grwkhv9s9hfvs7phciypz"; depends=[bit64 curl data_table fs getPass ggplot2 hdf5r jsonlite lazyeval raster RColorBrewer sp]; }; + rFIA = derive2 { name="rFIA"; version="0.2.3"; sha256="1y9bl9bsljlx2bmxp5z1hzr534r4igx1i3xgbap7y39xvsv9ihml"; depends=[bit64 data_table dplyr gganimate ggplot2 progress purrr sf sp stringr tidyr tidyselect]; }; + rFSA = derive2 { name="rFSA"; version="0.9.6"; sha256="1fxd194iq8jnlsnj76mjq2f6db7ln641qwfsf5v63kx3qqhn8x5s"; depends=[hash rPref tibble tidyr]; }; + rFerns = derive2 { name="rFerns"; version="4.0.0"; sha256="0a4i918xb3r602lxrgk8gm9jjvxzsm49gxdh1zdza2rrjc4fm36c"; depends=[]; }; + rGEDI = derive2 { name="rGEDI"; version="0.1.8"; sha256="0smxzws730sjn8kxnmhgc0lg8v4qig53cv8nbwqhig7dlw6djfml"; depends=[bit64 curl data_table fs getPass ggplot2 hdf5r jsonlite lazyeval raster RColorBrewer sp]; }; rGammaGamma = derive2 { name="rGammaGamma"; version="1.0.12"; sha256="1051ah6q11qkxj1my4xybbzc8xcqkxfmps8mv2his5cyfllwidbs"; depends=[gsl]; }; rGoodData = derive2 { name="rGoodData"; version="0.1.1"; sha256="092sgy6y3dkyr32hrir4jvjwh7n6gfvv9z7i631fipg59255g0zy"; depends=[data_table httr jsonlite]; }; rGroovy = derive2 { name="rGroovy"; version="1.3"; sha256="172vm4diygzi4ipmw8bl03k0x3aps0h1vkvwvw539kamy7xb5w98"; depends=[rJava]; }; @@ -12380,33 +12839,40 @@ in with self; { rIntervalTree = derive2 { name="rIntervalTree"; version="0.1.0"; sha256="0xd6wcra4zvphfgnz1rnnslx96p840zlgms367370xm4hyg6d37x"; depends=[]; }; rIsing = derive2 { name="rIsing"; version="0.1.0"; sha256="1208lwfk9j8gghj8xf6i8v6s18h89ydqsd4jq3r88n403yzbzzck"; depends=[data_table Rcpp RcppEigen]; }; rJPSGCS = derive2 { name="rJPSGCS"; version="0.2-10"; sha256="0a00s10yp22fkvk67dkq43sbphcqla65x9j4qpv076bmdchn7arw"; depends=[chopsticks rJava]; }; - rJava = derive2 { name="rJava"; version="0.9-12"; sha256="03vv0pj6san03c51iyqsyb1rwh3097dfpl2s8iswzzmc7k3shj12"; depends=[]; }; + rJava = derive2 { name="rJava"; version="0.9-13"; sha256="1x3mihyqzr61j52rwaqciw43mkjzmhib4s6qf57v6xj40ksqh5jv"; depends=[]; }; rJython = derive2 { name="rJython"; version="0.0-4"; sha256="13fpcw37cca738v9idqgi3gv9avfkfwfacxj54p2c4wyg46ghnah"; depends=[rJava rjson]; }; rKIN = derive2 { name="rKIN"; version="0.1"; sha256="1j6fdi5h869q4d1hq6ha6qyhisa0zk2qmhjrc4ahl9991d680dyn"; depends=[ggplot2 maptools MASS rgeos sp]; }; + rKolada = derive2 { name="rKolada"; version="0.1.3"; sha256="1ay9zm5gxs09dwpp1lwx76j432rfk7a7ly6zwqk31clyi2ldi6mn"; depends=[dplyr ggplot2 glue httr jsonlite magrittr purrr rlang stringi stringr tibble tidyr]; }; rLDCP = derive2 { name="rLDCP"; version="1.0.2"; sha256="0k7zc1xyqmcl7070hhpqw1d2k1ij6bd4wjym8cw263pds2n7nx21"; depends=[XML]; }; + rLFT = derive2 { name="rLFT"; version="1.0.0"; sha256="0r5zyzwb9lzcbwllsblwhmzs4891jvpvzbifv93m75zm6bd5w69p"; depends=[Rcpp sf]; }; rLTP = derive2 { name="rLTP"; version="0.1.4"; sha256="04w432m03xwh0szshsrfw5h7wy43q4lj8z0y07k8w6gsf27cy5bx"; depends=[RCurl]; }; rLakeAnalyzer = derive2 { name="rLakeAnalyzer"; version="1.11.4.1"; sha256="1bwg8mzddsc39km85b41bxp2hwqmb4g5a3010f6yp1qlgcb9rmj1"; depends=[plyr]; }; rLiDAR = derive2 { name="rLiDAR"; version="0.1.1"; sha256="1w0yi4ygw0l9ydbllqjylp30d401bsf7b6fng6qg3pssbi9v3kln"; depends=[bitops deldir geometry plyr raster rgl sp spatstat]; }; rLindo = derive2 { name="rLindo"; version="8.0.1"; sha256="05qyc4wvpjgw8jxmwn2nwybi695fjn0cdilkprwmjg07c82f0q5n"; depends=[]; }; - rMEA = derive2 { name="rMEA"; version="1.1.0"; sha256="1aarnik0qjxg6h55xpskx1dwkp78nfdyrwpy9r6ffyxhz9jbplnj"; depends=[]; }; + rMEA = derive2 { name="rMEA"; version="1.2.0"; sha256="1h5flmysyxv668si4ycfkkgairy7balk3nm0dsm91gns9xhvjqs0"; depends=[]; }; rMR = derive2 { name="rMR"; version="1.1.0"; sha256="0da1hclfnnlkp9by6zf2p079643p8nimplr9p3ipbjdy739j344z"; depends=[biglm]; }; + rMVP = derive2 { name="rMVP"; version="1.0.3"; sha256="02ll7mwxix96jas1xp7gb7nm29fdq2ym6b3wmy7246ral2j11pwf"; depends=[BH bigmemory MASS Rcpp RcppArmadillo RcppEigen RcppProgress]; }; rModeling = derive2 { name="rModeling"; version="0.0.3"; sha256="0xrjxayp59f31wwcqqkzs5my2j2lpbv1f4pp709fmqxz02vbdzhv"; depends=[caret e1071 MASS]; }; + rMorningStar = derive2 { name="rMorningStar"; version="1.0.6"; sha256="1xa68yqzyg3szk1g3hhyvi6bxz83nr18wzk5z75g77ndw3k8jyji"; depends=[dplyr ggplot2 PerformanceAnalytics purrr quantmod readr rvest stringi stringr tidyr xml2 xts]; }; rNMF = derive2 { name="rNMF"; version="0.5.0"; sha256="1nz6h0j5ywdh48m0swmhp34hbkycd7n13rclrxaw85qi9wc42597"; depends=[knitr nnls]; }; rNOMADS = derive2 { name="rNOMADS"; version="2.4.2"; sha256="0mir7b2693s27gll5j6fsgy7wq0fg48ddx6h78j7cgg7md75756f"; depends=[fields GEOmap MBA RCurl rvest stringr uuid XML]; }; - rNeighborGWAS = derive2 { name="rNeighborGWAS"; version="1.0.0"; sha256="13yhc279w5ds908bjplpqxf63db7hlp2dgnj8307ds4wkw6w1mbk"; depends=[gaston Matrix RcppParallel]; }; + rNeighborGWAS = derive2 { name="rNeighborGWAS"; version="1.2.1"; sha256="1dsl8zspndy13yykxrjh4dflp7hl45dw3mggkhz15ap6knvv8hdz"; depends=[gaston Matrix RcppParallel]; }; + rNeighborQTL = derive2 { name="rNeighborQTL"; version="1.1.0"; sha256="01c535q09cnmlb41cjh4907wp60v2pvi4vagc1ichbmqgfw7xp8r"; depends=[gaston Matrix qtl]; }; rODE = derive2 { name="rODE"; version="0.99.6"; sha256="0l518ghfw6283kckqcbh45a35vd73njy05v3dwghhhjdj7v3km8b"; depends=[data_table]; }; - rPACI = derive2 { name="rPACI"; version="0.1.1"; sha256="0skpv7h91vfr8xkx0ic8yz7hcj1bbwd1f80sa9p9jn2rpfpzalv9"; depends=[]; }; + rPACI = derive2 { name="rPACI"; version="0.1.2"; sha256="1lk2971590ivw5g65kj99qjn6zdsz9jb7zk0hggf82jmz4rfa175"; depends=[bnlearn]; }; rPAex = derive2 { name="rPAex"; version="1.0.1"; sha256="1v85qy8fg6vf1fqqqawzw4i9sfaihdqzbs0h91hpqbzkc4v7n2bb"; depends=[agricolae raster]; }; rPackedBar = derive2 { name="rPackedBar"; version="0.2.2"; sha256="1nh0kvj4bqkinczj8llcgy63ibsnk9vgsvm0vqg8g526x0vffdma"; depends=[data_table plotly scales shiny]; }; rPowerSampleSize = derive2 { name="rPowerSampleSize"; version="1.0.2"; sha256="1insdfvcn1pirsnf7nwfia0kzgsmh2zpghgfj2yc35ld1r9j2hp2"; depends=[mvtnorm ssanv]; }; rPraat = derive2 { name="rPraat"; version="1.3.1"; sha256="01bz0ja35k8q3ncj9jaqbfh42sf5s73yrb6gsj11lapmfb3g8scf"; depends=[dplyr dygraphs readr stringr tuneR]; }; rPref = derive2 { name="rPref"; version="1.3"; sha256="0vlzhxhf2x6gw015sjfw2638wv6hckg068rpbzncp7wprn9msa6y"; depends=[dplyr igraph lazyeval Rcpp RcppParallel]; }; - rQCC = derive2 { name="rQCC"; version="1.20.3"; sha256="01gi447qwm6j682s7ka034g28k74l3fr9ijam6l9n0f228q930gp"; depends=[]; }; + rQCC = derive2 { name="rQCC"; version="1.20.7"; sha256="0qbwz5imzgwfwkcvy23ayqvsd8da1nzmhzn8biapgn3gr23w2lx2"; depends=[]; }; rRAP = derive2 { name="rRAP"; version="1.1"; sha256="1nzvs8bjkbjraa33azxf9mrxsxh87qhh3qlldrcs5y4fq4ancyqb"; depends=[lars lassoshooting MASS]; }; + rRofex = derive2 { name="rRofex"; version="2.0.3"; sha256="1hhmnzhfkjyq71mgwj0hbml3cnw4bv3gl1pvnpglcr9qi83kd846"; depends=[dplyr glue httr jsonlite later lifecycle magrittr purrr rlang tibble tidyr websocket]; }; rSCA = derive2 { name="rSCA"; version="3.1"; sha256="0dhd5325x05cbnw34mlipndw5xnncl9kj7kppb2s5bx2gllcdqqd"; depends=[]; }; rSEA = derive2 { name="rSEA"; version="2.1.1"; sha256="18108ds65ykxygbw1s4i5rb1ngzwymv1x3dhcv1lcwkmqplnaar9"; depends=[ggplot2 hommel]; }; rSFA = derive2 { name="rSFA"; version="1.04"; sha256="0gd6ji1ynbb04rfv8jfdmp7dqnyz8pxcl5636fypd9a81fggl0gs"; depends=[MASS]; }; rSHAPE = derive2 { name="rSHAPE"; version="0.3.2"; sha256="0z6dizsxlkmaymbd24b1m1i8kmndcf21nxxnyfzq6gvdii7bal4h"; depends=[abind DBI doParallel evd foreach RSQLite sn VGAM]; }; + rSPARCS = derive2 { name="rSPARCS"; version="0.0.9"; sha256="0dk9xs1b9zhsbdqva1wc0gs1rvcc3wvclwnxvc0r4i7fbfn2an8i"; depends=[data_table geosphere plyr raster sp spatialEco tigris]; }; rSPDE = derive2 { name="rSPDE"; version="0.4.8"; sha256="1m8ys6k3f1jy9iiby36sw0gvz282bhpzgnwa801hv59k411wrh2g"; depends=[Matrix]; }; rSQM = derive2 { name="rSQM"; version="1.3.14"; sha256="0m69n2pnfv2085dln6p149a5gw0gif9xk00xmad5s9j68hwjdmym"; depends=[dplyr EcoHydRology ggplot2 gsubfn mise ncdf4 qmap reshape2 stringr yaml zoo]; }; rSymPy = derive2 { name="rSymPy"; version="0.2-1.2"; sha256="0jdl8ss3dbgjqrmmppb0ix1gqk9g28pbh6w5sybil046ic83s13i"; depends=[rJython]; }; @@ -12420,54 +12886,56 @@ in with self; { rWind = derive2 { name="rWind"; version="1.1.5"; sha256="1fdnbh6yprgbysv6j6i108q9z6b7r17kb2hg4i4sa97c2jlcb39s"; depends=[gdistance lubridate Matrix raster]; }; rWishart = derive2 { name="rWishart"; version="0.1.2"; sha256="0wzijc454mrvmggb7a5jqwjbmk0kzr4bmy0iwniz5cn343pr1rri"; depends=[lazyeval MASS Matrix]; }; rYoutheria = derive2 { name="rYoutheria"; version="1.0.3"; sha256="1r63ggy4knwzxnpjkmsn7zwmwfaznm8mmxl7r9ph10wz4sblgygl"; depends=[plyr RCurl reshape2 RJSONIO]; }; - rabhit = derive2 { name="rabhit"; version="0.1.4"; sha256="1r02brl2ca33ccd2b3dhf1zfx9zg0vqsvnqlbvd68mqgl74xqlbl"; depends=[alakazam cowplot data_table dendextend dplyr fastmatch ggdendro ggplot2 gridExtra gtable gtools htmlwidgets plotly RColorBrewer reshape2 rlang splitstackshape stringi tidyr tigger]; }; + rabhit = derive2 { name="rabhit"; version="0.1.5"; sha256="0dqzcv241g2b2slygq87w4qkdxalr58zs61k7485b8745xansxmv"; depends=[alakazam cowplot data_table dendextend dplyr fastmatch ggdendro ggplot2 gridExtra gtable gtools htmlwidgets plotly plyr RColorBrewer reshape2 rlang splitstackshape stringi tidyr tigger]; }; rabi = derive2 { name="rabi"; version="1.0.2"; sha256="0jndx1gvsnsv1xrx3ismgvjp7d4kj3436zcawvw32c5klvxx0y4j"; depends=[numbers polynom shiny stringdist]; }; - raceland = derive2 { name="raceland"; version="1.0.8"; sha256="0f12z0g27wrk9mq3vh0qqcjp4qh882853h6ps1iaspwajkb22f3k"; depends=[comat fasterize plotwidgets raster Rcpp RcppArmadillo rgdal sf]; }; + raceland = derive2 { name="raceland"; version="1.1.0"; sha256="1bhgzr8wq693c9djyvramc9cljzdhgkbga6p9785azpvn7hc6gd5"; depends=[comat fasterize plotwidgets raster Rcpp RcppArmadillo rgdal sf]; }; + racir = derive2 { name="racir"; version="2.0.0"; sha256="0qpjnaifx4z1jvyrc8p5jny0ci20w2ri1rs68sv9b93nkaiixnps"; depends=[]; }; radar = derive2 { name="radar"; version="1.0.0"; sha256="1wh5j3cfbj01jx2kbm9ca5cqhbb0vw7ifjn426bllm4lbbd8l273"; depends=[]; }; radarBoxplot = derive2 { name="radarBoxplot"; version="1.0.0"; sha256="16s38yy984mb1hmsdw17z4nk2z4xg03xi0yrp7445yqv3fs1fghl"; depends=[]; }; radarchart = derive2 { name="radarchart"; version="0.3.1"; sha256="0gcxnbgj8ja1m4wzhbjy67m6zphf0c5ni9yx7sr7f0abm03ry753"; depends=[htmltools htmlwidgets]; }; radiant = derive2 { name="radiant"; version="1.3.2"; sha256="02qc7s64ryfn0l88kfj61kdnrg8gl6dmrxzscgqh85fc1yaipjcf"; depends=[r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate shiny]; }; radiant_basics = derive2 { name="radiant.basics"; version="1.3.4"; sha256="0y4s3zhphkaxlgwmiz96nwxq1s87i2i1mnph062xghlm7x92bwc3"; depends=[dplyr ggplot2 lubridate magrittr patchwork polycor psych r_import radiant_data scales shiny tidyr]; }; - radiant_data = derive2 { name="radiant.data"; version="1.3.4"; sha256="19sjjb49inrfl7jzq4zpwhdslni0zrp30bl58pisin29ka3ylpzs"; depends=[base64enc broom car curl dplyr DT ggplot2 glue jsonlite knitr lubridate magrittr markdown MASS patchwork plotly psych r_import randomizr readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce shinyFiles stringi tibble tidyr writexl]; }; + radiant_data = derive2 { name="radiant.data"; version="1.3.10"; sha256="09a3wn3gl1zjq5zsc5zaxyq71dg5qnpk57bmwd6qy8w99g2clm8c"; depends=[base64enc broom car curl dplyr DT ggplot2 glue jsonlite knitr lubridate magrittr markdown MASS patchwork plotly psych r_import randomizr readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce shinyFiles stringi tibble tidyr writexl]; }; radiant_design = derive2 { name="radiant.design"; version="1.3.5"; sha256="1514s21jybyvpi2sx06xsxfrzgg07x7xxhwsazc61v3w1mllj2xw"; depends=[AlgDesign dplyr magrittr mvtnorm polycor pwr r_import radiant_data randomizr shiny]; }; - radiant_model = derive2 { name="radiant.model"; version="1.3.10"; sha256="1i9l819n8xlx9dzw9hdrpl9bfar22ly5dpqlywciffi4p08p3lrl"; depends=[broom car data_tree DiagrammeR dplyr e1071 ggplot2 ggrepel lubridate magrittr NeuralNetTools nnet patchwork pdp psych r_import radiant_basics radiant_data ranger rlang rpart sandwich shiny stringr tidyr xgboost yaml]; }; + radiant_model = derive2 { name="radiant.model"; version="1.3.13"; sha256="18j6yyrqf8yiix6nhx89n4s78vs0559b3j58srdkpcncd99s6451"; depends=[broom car data_tree DiagrammeR dplyr e1071 ggplot2 ggrepel lubridate magrittr NeuralNetTools nnet patchwork pdp psych r_import radiant_basics radiant_data ranger rlang rpart sandwich shiny stringr tidyr xgboost yaml]; }; radiant_multivariate = derive2 { name="radiant.multivariate"; version="1.3.5"; sha256="1khgy3zj0q155dyky1bd2wfdj6r8jgw8aa6a2nj0rbnwa5zam913"; depends=[car clustMixType dplyr ggplot2 ggrepel gower GPArotation lubridate magrittr MASS patchwork polycor psych r_import radiant_data radiant_model rlang scales shiny]; }; radiomics = derive2 { name="radiomics"; version="0.1.3"; sha256="1ra94yaqw88slznhyv70kbfricxi44m4pnx1zh4ijghm491rphr5"; depends=[Rcpp reshape2 spatstat]; }; radir = derive2 { name="radir"; version="1.0.4"; sha256="12a99ig3n6kp5wa5rjp2w1nal4qqjs6vq05d3lrqcyl3bind6lqb"; depends=[hermite]; }; radix = derive2 { name="radix"; version="0.6"; sha256="0290n0yax8649srdjbq4439h0d9f6jsmxayyhp86igcnszcxilnb"; depends=[base64enc bookdown digest downloader htmltools jsonlite knitr lubridate mime png progress rmarkdown rprojroot rstudioapi stringr whisker xfun xml2 yaml]; }; - radlibs = derive2 { name="radlibs"; version="0.1.0"; sha256="1yyd63shc35mdixkz8gigwqb9g2l1baxgmzijhshpqavixdhazmk"; depends=[data_table lexicon stringr]; }; + radlibs = derive2 { name="radlibs"; version="0.2.0"; sha256="1xl7pacqgiv68ay7mkr6bkx3rqqr7z8b9yh42n4zm7ybqfxbx6dr"; depends=[data_table lexicon stringr]; }; radmixture = derive2 { name="radmixture"; version="0.0.1"; sha256="0rs60xjd43lg5c9972qhpg6bsqfg2578qvrz7gz3bdip10jb1ryj"; depends=[magrittr MCMCpack plyr quadprog]; }; - radsafer = derive2 { name="radsafer"; version="2.2.0"; sha256="0xkmyxw2lslgy22rnb1ll4zw4h06p4ldvaavvwnzy8l7mzqlr6in"; depends=[dplyr ggplot2 ggthemes magrittr RadData readr rlang stringr]; }; + radsafer = derive2 { name="radsafer"; version="2.2.2"; sha256="1i0qbj8bx6gqr70c178lsaihaiapcmnij7clqci57g304ig59afr"; depends=[dplyr ggplot2 ggthemes magrittr RadData readr rlang scatterplot3d stringr]; }; rafalib = derive2 { name="rafalib"; version="1.0.0"; sha256="1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k"; depends=[RColorBrewer]; }; - ragg = derive2 { name="ragg"; version="0.1.5"; sha256="1fqklwwmaf3vyj87kir46bpa9cv1fwyw3amgayh0zcdjfrk6flww"; depends=[systemfonts]; }; + ragg = derive2 { name="ragg"; version="0.3.1"; sha256="1ww1fwzzpj5zdzldrlydll89nlmqr13angdak6fzjin16sfmvhhj"; depends=[systemfonts]; }; rags2ridges = derive2 { name="rags2ridges"; version="2.2.2"; sha256="1xayfj9ac1czl6pipfnr3a3r0jrdfvsqiksf9w4blavpp9xv9dbp"; depends=[expm fdrtool ggplot2 graph gRbase Hmisc igraph RBGL Rcpp RcppArmadillo reshape RSpectra sfsmisc snowfall]; }; ragt2ridges = derive2 { name="ragt2ridges"; version="0.3.4"; sha256="17i3z0p3a4dqa0bch5l1r830w5nlxhdg71y82jipp6cfiwli588z"; depends=[abind Biobase CGHbase expm fdrtool igraph MASS Matrix mvtnorm rags2ridges Rcpp RcppArmadillo]; }; ragtop = derive2 { name="ragtop"; version="1.1.1"; sha256="0vgc2q71g8ysccq19kbk9a4swxgd5qj91xm4bshfgdg5chxqnb50"; depends=[futile_logger limSolve]; }; rai = derive2 { name="rai"; version="1.0.0"; sha256="0qimfzchbrarkwmv3mxxbdgvqzk16sc8m1h140zm0cnfgr2pvi5p"; depends=[dplyr ggplot2 readr rlang]; }; rainbow = derive2 { name="rainbow"; version="3.6"; sha256="11vfcck17d2xjc049ci5i8l1nqv345anmd110gdz7654i1pj9lb3"; depends=[cluster colorspace hdrcde ks MASS pcaPP]; }; + raincin = derive2 { name="raincin"; version="1.0.3"; sha256="1wi430vsp5c0vm9p1srrs0nrbdb8x31qh7zph4v3fy7j0z226cwh"; depends=[lme4 popdemo]; }; raincpc = derive2 { name="raincpc"; version="1.1.0"; sha256="1f59z989q0ipwnkxwiwqj9m6v37qli6c5f1ks5kml5ndpmjxf1h1"; depends=[raster]; }; - rainette = derive2 { name="rainette"; version="0.1"; sha256="0rchm02bzahmwa11riyypfgb72dz5003y9zsyfknin0ckvqycysv"; depends=[dendextend dplyr formatR future future_apply ggplot2 ggwordcloud gridExtra highr miniUI progressr purrr quanteda RColorBrewer Rcpp rlang RSpectra shiny stringr tidyr]; }; + rainette = derive2 { name="rainette"; version="0.1.1"; sha256="1s9xwc5mw5m3ax3wyjnwjgh18glbhr1wzsp867fpk7s9bdzfxl9s"; depends=[dendextend dplyr formatR future future_apply ggplot2 ggwordcloud gridExtra highr miniUI progressr purrr quanteda RColorBrewer Rcpp rlang RSpectra shiny stringr tidyr]; }; rainfarmr = derive2 { name="rainfarmr"; version="0.1"; sha256="1gasnmyjnis6vv0krx6299ck2a6v9v1fgqajzqdpjaz2fsxn245i"; depends=[]; }; rakeR = derive2 { name="rakeR"; version="0.2.1"; sha256="0cd89q6k0y9z1qk9k06iw56lhj4c52ckr0g4qv6q95lkyrbi3qg8"; depends=[ipfp wrswoR]; }; - ralger = derive2 { name="ralger"; version="2.0.0"; sha256="05hcrly7wf5bmfi14ji791vbix8q4fsl13la6yi7zjzwh1hd55sd"; depends=[crayon dplyr magrittr purrr robotstxt rvest stringr testthat tidyr xml2]; }; + ralger = derive2 { name="ralger"; version="2.0.1"; sha256="1y6zrd1r331fpwdx0hghqn2d389fpdxj2fny58n415knvzc2g1gw"; depends=[crayon dplyr magrittr purrr robotstxt rvest stringr testthat tidyr xml2]; }; ramchoice = derive2 { name="ramchoice"; version="1.1"; sha256="1im9r95109919hfmici6avdqxh3a375wmg2lfy75z1gjivvcygbr"; depends=[MASS]; }; ramcmc = derive2 { name="ramcmc"; version="0.1.0-1"; sha256="0x8q0bah8fcyqlwap9iw52xhl6b989va5c144kgmfimh2b4yinc7"; depends=[Rcpp RcppArmadillo]; }; ramify = derive2 { name="ramify"; version="0.3.3"; sha256="0cxmkxhshg0vrcxai2gbm4iih04f44liv5nh5jiq85hjz8qbhdi2"; depends=[]; }; ramlegacy = derive2 { name="ramlegacy"; version="0.2.0"; sha256="0q8qks8qapar12dzlkxlbvw4rj7qxmfw64cph834ckm4z7sis873"; depends=[cli crayon httr rappdirs readxl]; }; ramps = derive2 { name="ramps"; version="0.6.16"; sha256="1az2wp1jrf4yszcgq9l18g4b9bi2hkg0q6nymdaksbn20jkhwg32"; depends=[coda fields maps Matrix nlme]; }; - ramsvm = derive2 { name="ramsvm"; version="2.1"; sha256="18cal64r14gr73aws27cyjx1p768m064xy7rsnx7spv5hwajhwcl"; depends=[doParallel foreach]; }; + ramsvm = derive2 { name="ramsvm"; version="2.2"; sha256="105f3g2s47sb4vxf88k26lws60ay1h8n3g48rmyhpzhgmwc13027"; depends=[doParallel foreach]; }; randNames = derive2 { name="randNames"; version="0.2.3"; sha256="0vhzg14yg4c9inzxin8prfzh6nhf8fvbi4hbn122fyqyp5d6f8zi"; depends=[httr jsonlite tibble]; }; randaes = derive2 { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; }; randcorr = derive2 { name="randcorr"; version="1.0"; sha256="1hnr0wvbsmgql39wlj4z2qbqn0fdfwyihfl6xgrlzvs9vrmig5xx"; depends=[]; }; randgeo = derive2 { name="randgeo"; version="0.3.0"; sha256="14hlh9k66lcbf0xhnxx12rrnyl8awqcsm3csvxdz23s5wnm2ya5p"; depends=[]; }; randnet = derive2 { name="randnet"; version="0.2"; sha256="1hiqwz9q9nd8s5p97m6hgam1hmp33y0lks4sybzj2w3r5qdb1g2a"; depends=[AUC entropy irlba Matrix poweRlaw RSpectra]; }; random = derive2 { name="random"; version="0.2.6"; sha256="0sdhagwjlhldb8hn6h4nd1sflzhwkapzybdlb8hzisy3w2ygjn9b"; depends=[curl]; }; - random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-3"; sha256="00mzkchkzry5gi1gzgghkhljn21pj1aakpmd4pkcdm0hy5vj9pg2"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; + random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-4"; sha256="19yzpjidw5pbrqfa5ln5hgghv0mq3cwl92z2isq25yydfl6qsl6h"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; randomForest = derive2 { name="randomForest"; version="4.6-14"; sha256="0kbmm0l42fc2d1rdq0l7k09d34kd87q4lx651ffsic4y84h8kf7l"; depends=[]; }; - randomForestExplainer = derive2 { name="randomForestExplainer"; version="0.10.0"; sha256="08j4mj6r595kzkrgkvjhkda9x6w275nmnvmmhmyk0knq2p2g7p2r"; depends=[data_table dplyr DT GGally ggplot2 ggrepel randomForest ranger reshape2 rmarkdown]; }; + randomForestExplainer = derive2 { name="randomForestExplainer"; version="0.10.1"; sha256="1ny8c3vn2zvdx12avwvlm4lp648jigkrkcvnhf5qmj8rh0w069v0"; depends=[data_table dplyr DT GGally ggplot2 ggrepel randomForest ranger reshape2 rmarkdown]; }; randomForestSRC = derive2 { name="randomForestSRC"; version="2.9.3"; sha256="05ifvj49jv0n5p6k46milpgj9r10sc5aw23fypyyibdgwpwvwixw"; depends=[]; }; randomGLM = derive2 { name="randomGLM"; version="1.02-1"; sha256="031338zxy6vqak8ibl2as0l37pa6qndln0g3i9gi4s6cvbdw3xrv"; depends=[doParallel foreach MASS]; }; - randomLCA = derive2 { name="randomLCA"; version="1.0-15"; sha256="10rx2ah50dcjxz5y492c59d3pn0dvlgjaxfdf8sknkf6s4pmwkis"; depends=[boot fastGHQuad lattice Matrix]; }; + randomLCA = derive2 { name="randomLCA"; version="1.0-16"; sha256="1np63fvxrf7mkgnpfii77wr8drqgfrbav0jzczp2gj6fw85ypib3"; depends=[boot fastGHQuad lattice Matrix Rfast]; }; randomNames = derive2 { name="randomNames"; version="1.4-0.0"; sha256="1kchngfjv53n32z2qjrplp2xmssl8gjx1y3m7bxsfq1wjzj52qf5"; depends=[crayon data_table toOrdinal]; }; randomUniformForest = derive2 { name="randomUniformForest"; version="1.1.5"; sha256="1amr3m7h5xcb8gahrr58233chsnx1naf9x5vpjy9p5ivh71xcxf7"; depends=[cluster doParallel foreach ggplot2 gtools iterators MASS pROC Rcpp]; }; randomcoloR = derive2 { name="randomcoloR"; version="1.1.0.1"; sha256="0rqh1zrdza12qq7475f77yvryhh4hj0pg25lb8ywrcljgaj53bnb"; depends=[cluster colorspace Rtsne scales stringr V8]; }; @@ -12477,7 +12945,6 @@ in with self; { randomizr = derive2 { name="randomizr"; version="0.20.0"; sha256="0dljyfldnardaps3fq6vi5wcs9x6qfaq5apapa78c51lnaa6fn9h"; depends=[]; }; randomsearch = derive2 { name="randomsearch"; version="0.2.0"; sha256="0ywr4ms66p5nmq8bzy04gbvmpp0nhfyf8rvynhr2c4alqva9x3yi"; depends=[checkmate fs parallelMap ParamHelpers smoof]; }; randquotes = derive2 { name="randquotes"; version="0.1.1"; sha256="0fj9vx0c4059511wka7ip30yz87y144pz7ny840gp72qm73pp8li"; depends=[curl httr jsonlite xml2]; }; - randstr = derive2 { name="randstr"; version="0.2.0"; sha256="17593lbk6r089yasafd21i3v90ya9n92rflpzl0qicd2kqqk2gdh"; depends=[random stringi truncnorm]; }; randtests = derive2 { name="randtests"; version="1.0"; sha256="03z3kxl4x0l91dsv65ld9kgc58z82ld1f4lk18i18dpvwcgkqk82"; depends=[]; }; randtoolbox = derive2 { name="randtoolbox"; version="1.30.1"; sha256="0qg20ar6qns858jdzqhmfq7yji81czhr6cim257958gqpj66sn95"; depends=[rngWELL]; }; rangeBuilder = derive2 { name="rangeBuilder"; version="1.5"; sha256="17wyf9ljgdbpxgl9gy6f1279h88k0rjfcarw7kgp145bm3c36jwf"; depends=[alphahull cleangeo pbapply raster Rcpp rgdal rgeos sp stringi]; }; @@ -12494,24 +12961,25 @@ in with self; { rappdirs = derive2 { name="rappdirs"; version="0.3.1"; sha256="0ji6sg3bdn5gazkq14xmmcq7jnbsyxw4lzmmbgv6526j2vn93n1g"; depends=[]; }; rapport = derive2 { name="rapport"; version="1.0"; sha256="1i1zawar5yxw23km74mrvaxnc9hr06kqjvbm046c09cqi6pw0hjh"; depends=[pander rapportools stringr yaml]; }; rapportools = derive2 { name="rapportools"; version="1.0"; sha256="1sgv4sc737i12arh5dc3263kjsz3dzg06qihfmrqyax94mv2d01b"; depends=[pander plyr reshape]; }; - raptr = derive2 { name="raptr"; version="0.1.6"; sha256="0jx3g04c1yzvk42hiwkmbb8hf2lmg909lvjhka2f528wbg80lh1r"; depends=[adehabitatHR assertthat BH boot doParallel gdalUtils ggplot2 hypervolume ks Matrix mvtnorm PBSmapping plyr RandomFields raster RColorBrewer Rcpp RcppEigen rgdal rgeos RgoogleMaps scales shape sp]; }; + raptr = derive2 { name="raptr"; version="0.1.7"; sha256="1gm99nnvn3b9xz6216masv7ji8j8vrkprzprkba5y1h22gzwxd3n"; depends=[adehabitatHR assertthat BH boot doParallel ggplot2 hypervolume ks Matrix mvtnorm PBSmapping plyr RandomFields raster RColorBrewer Rcpp RcppEigen rgdal rgeos RgoogleMaps scales shape sp]; }; rare = derive2 { name="rare"; version="0.1.1"; sha256="0j78ilswiaxdp9107psiw8ibxncd7i81z2njhfqf0n7532pbvjss"; depends=[glmnet Matrix Rcpp RcppArmadillo]; }; rareGE = derive2 { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; }; rareNMtests = derive2 { name="rareNMtests"; version="1.1"; sha256="13r2hipqsf8z9k48ha5bh53n3plw1whb7crpy8zqqkcac8444b2z"; depends=[vegan]; }; rarms = derive2 { name="rarms"; version="1.0.0"; sha256="11wjxd3pxvjv1j2nz26l8f0kykk9w6lf08izhivfngp63dk2akns"; depends=[jsonlite]; }; - rasciidoc = derive2 { name="rasciidoc"; version="2.1.1"; sha256="05zlp14hiimf5p8l7381wvqzi28pbp7ig9a3i6n79zkrqz7hsab0"; depends=[document git2r highr knitr xfun]; }; + rasciidoc = derive2 { name="rasciidoc"; version="2.1.3"; sha256="12ylvzjfxrqy3yv8nw95z0mx9v9gv94v4ifiblss5r73kdgdbgs5"; depends=[document git2r highr knitr xfun]; }; rasclass = derive2 { name="rasclass"; version="0.2.2"; sha256="1lsmv8kh519mz3szb4k9s17fz1480cw0i4qk12givhhm2rpzjy50"; depends=[car e1071 nnet randomForest RSNNS]; }; rase = derive2 { name="rase"; version="0.3-3"; sha256="03jqf5y5vj354m9psp81wzw6d7dfqr76bfjqv9kannsakkj587sy"; depends=[ape mvtnorm polyCub rgl sm spatstat]; }; - raster = derive2 { name="raster"; version="3.1-5"; sha256="010sq00ijpmwac280ip9rryw0pxk0al8g675v2lc9rdrbgaj4rnv"; depends=[Rcpp sp]; }; + raster = derive2 { name="raster"; version="3.3-13"; sha256="1s6457rq94qvm3s2lqscs2c2gn5kzcpxa13i8nhlgb1klx5kams7"; depends=[Rcpp sp]; }; rasterDT = derive2 { name="rasterDT"; version="0.3.1"; sha256="1dl083jm4x0shl7lq4in2alksgi63hp1p7j2cnsvkmwjaxygzm9v"; depends=[data_table fasterize raster sf]; }; rasterImage = derive2 { name="rasterImage"; version="0.4.0"; sha256="191m5k1rbbwziznmxbsq4g55afkw8gb5011i70f3wx3dscr3phxz"; depends=[plotrix]; }; rasterKernelEstimates = derive2 { name="rasterKernelEstimates"; version="1.0.1"; sha256="1733ic1hxym3gyibk2ysy5zzq7s9rbf6jx63x7irnrcavq151f8s"; depends=[raster]; }; rasterList = derive2 { name="rasterList"; version="0.5.8"; sha256="0q7apglxzpah04463z07cpkzyd6l6dbbdhm601brzh6yk75z20vh"; depends=[raster]; }; - rasterVis = derive2 { name="rasterVis"; version="0.47"; sha256="1lsi3vk7s3bzw07vn57s6748flmbrj5s3n349cxbmhlm123vwghj"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp viridisLite zoo]; }; - rasterdiv = derive2 { name="rasterdiv"; version="0.1-0"; sha256="19cz25wwv7h7h9c374mgci8ic1425g5rmsfhyv0bwaqhhn3wz93q"; depends=[doParallel foreach proxy raster svMisc]; }; + rasterVis = derive2 { name="rasterVis"; version="0.48"; sha256="09mcdvhz3x5vsazd8xvm2z4jy69272ia0gsc8r94rnchcxl415wj"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp viridisLite zoo]; }; + rasterdiv = derive2 { name="rasterdiv"; version="0.2-1"; sha256="0zd5phvkrx5hhl77kyisrqy5in8psjanpp1yw39a79kcs0dyqk2y"; depends=[doParallel foreach pbapply pbmcapply proxy raster svMisc]; }; rasterize = derive2 { name="rasterize"; version="0.1"; sha256="18nrhmq1qmi05rkyr86xsyc8nz0fbdpf2d45h62bbfzbfynqd4qy"; depends=[png]; }; - rasterly = derive2 { name="rasterly"; version="0.1.0"; sha256="128699nc1y2parfwqfx31afdy3f91z5iarpx8q1v5qfmbmb12ppx"; depends=[data_table ggplot2 magrittr plotly Rcpp rlang]; }; + rasterly = derive2 { name="rasterly"; version="0.2.0"; sha256="1fv0ayh8r78qss7ikcwnj0i5x8iyz4c3icsfb554zji9bw30x7qr"; depends=[data_table ggplot2 magrittr plotly Rcpp rlang]; }; rasterpdf = derive2 { name="rasterpdf"; version="0.1.1"; sha256="0zi54nifbb4dzb29i8rskynblw3z42vzaykwbq30ia5zs9q1bvm5"; depends=[png]; }; + ratPASTA = derive2 { name="ratPASTA"; version="0.1.2"; sha256="1ddxryccsq0v3lvnjyl8x4z1yxw59zq5g4lwh5pnn1cykl0z7q1f"; depends=[dplyr ggplot2 ggpubr ggsci hms lubridate magrittr plyr rjson stringr tidyr]; }; ratelimitr = derive2 { name="ratelimitr"; version="0.4.1"; sha256="06x759jxr5zcnvg9q120n5bpipkb16piw15kxrpk7i918mby889b"; depends=[assertthat]; }; ratematrix = derive2 { name="ratematrix"; version="1.2.2"; sha256="08zc3yacgmd7y50nykbdqwq655jn3gz4x1ywrhvz8fymsdhdd39g"; depends=[ape coda corpcor ellipse geiger MASS mvMORPH phylolm Rcpp RcppArmadillo readr]; }; rateratio_test = derive2 { name="rateratio.test"; version="1.0-2"; sha256="1a2v12z2dr893ha80fhada1820z5ih53w4pnsss9r9xw3hi0m6k5"; depends=[]; }; @@ -12519,35 +12987,40 @@ in with self; { ratesci = derive2 { name="ratesci"; version="0.3-0"; sha256="1mdx47xpgjrjbb3lybajdmxb87dqr6cvv3fsvwfx0n629mjbih4z"; depends=[]; }; rationalfun = derive2 { name="rationalfun"; version="0.1-0"; sha256="15949vs9pdjz7426zhgqn7y87xzn79ikrpa2vyjnsid1igpyh0mp"; depends=[polynom]; }; ratios = derive2 { name="ratios"; version="1.2.0"; sha256="16q9v2lhgklvdp3hi9x3afdldznfpwg775p80m2g5074q2dzjpgg"; depends=[data_table stringr]; }; - rattle = derive2 { name="rattle"; version="5.3.0"; sha256="1siwnmh5yna63354jd8aypffk1naicvvnjykv5cssqyjdldcwp37"; depends=[dplyr ggplot2 magrittr rpart_plot stringi stringr tidyr XML]; }; + rattle = derive2 { name="rattle"; version="5.4.0"; sha256="1cg26k491f78yqwis07djad8b3f9ndqwqylbh5sh66l2j9bdpmz5"; depends=[bitops dplyr ggplot2 magrittr rpart_plot stringi stringr tibble tidyr XML]; }; rattle_data = derive2 { name="rattle.data"; version="1.0.2"; sha256="0cnmyzvy23jc4vz521c3jg0w4165waycvy5014l5773fy19zq75c"; depends=[]; }; - raustats = derive2 { name="raustats"; version="0.15.0"; sha256="047vs3wvakwkh7c98rgswhj73m43d6ryax2jblbdp5199knn5cm5"; depends=[dplyr httr jsonlite lubridate readxl rvest tidyr xml2]; }; + raveio = derive2 { name="raveio"; version="0.0.3"; sha256="02f8y2q3s21vr2d27ix707jwglm3pkr800f5fw5xfnk7jzs347gc"; depends=[data_table dipsaus edfReader fst glue hdf5r ini jsonlite later lazyarray R_matlab R6 rlang stringr yaml]; }; ravelRy = derive2 { name="ravelRy"; version="0.1.0"; sha256="07mywv57rw2b309i2qisbpx1x3sb3z6n2b5gia9bdmb2m4hhpdai"; depends=[dplyr httr jsonlite purrr tibble tidyr]; }; raw = derive2 { name="raw"; version="0.1.6"; sha256="0hnqwa9pwj3k2y0bs6hxrvbwksjyq0q6m73c9hhlafg8g3lkyxnf"; depends=[]; }; rawKS = derive2 { name="rawKS"; version="0.1.0"; sha256="1yiw9imhgij49qbm9hk6psb73zngqmxxwnaxq144ydwb7fbk6j0z"; depends=[dplyr ggplot2 magrittr ROCR tidyr]; }; - rawr = derive2 { name="rawr"; version="0.1.0"; sha256="1a8r1vyvki3z2ms4miqv6wq9pzympgifsjx0pzzs6f4b40m083lq"; depends=[dplyr jsonlite rvest xml2]; }; + rawr = derive2 { name="rawr"; version="0.1.1"; sha256="0jlmsvz7p1yw8gpfy81b6jkwqyqmaj443xl2cmp4rddiimfcczdi"; depends=[clipr dplyr jsonlite rvest stringr xml2]; }; raws_profile = derive2 { name="raws.profile"; version="0.1.0"; sha256="04f7wk7x9j3rb6nn3zqss9vw0h9a4vpcjyilc2vqy0fm2by41xkg"; depends=[stringr tibble withr]; }; - rayimage = derive2 { name="rayimage"; version="0.2.7"; sha256="075ms29ra354ygcxwazj3d217f94jq93hay4g6vl7g6sa0vnirrl"; depends=[jpeg magrittr png progress raster Rcpp RcppArmadillo]; }; - rayrender = derive2 { name="rayrender"; version="0.9.1"; sha256="1r2cpxlibkqmah1x3xdjzajz0kshbrmd575y8wngp44ihhajdzsd"; depends=[assertthat decido magrittr png progress purrr raster rayimage Rcpp RcppThread tibble]; }; - rayshader = derive2 { name="rayshader"; version="0.15.1"; sha256="0ppjjr2yawzr10jfrwlm4ih366sn5p7l6ql61k2yxwzc0516hsng"; depends=[doParallel foreach magrittr png progress raster Rcpp RcppArmadillo rgl scales]; }; - rbacon = derive2 { name="rbacon"; version="2.4.2"; sha256="0y6vsr2fyy059v10fdh8viwb7361pnh97k8zzh8105da9n6ymhrc"; depends=[coda Rcpp]; }; + rayimage = derive2 { name="rayimage"; version="0.3.1"; sha256="0xqasgyk4ws79325p6gxdkr0mf3lzd097bmzhizsxdp1gjma0r52"; depends=[jpeg magrittr png progress raster Rcpp RcppArmadillo]; }; + rayrender = derive2 { name="rayrender"; version="0.14.0"; sha256="0vikd5ahap7aahsv66xwkysj82hnhqgwf4dqfjrk82akagyznzg3"; depends=[assertthat decido magrittr png progress purrr raster rayimage Rcpp RcppThread tibble]; }; + rayshader = derive2 { name="rayshader"; version="0.19.2"; sha256="0qhv1wxgkkgksmfq19c894lgiiw4i22w7cwjs2x1r8n2b7xgb178"; depends=[doParallel foreach magrittr png progress raster rayimage Rcpp RcppArmadillo rgl scales terrainmeshr]; }; + rbacon = derive2 { name="rbacon"; version="2.4.3"; sha256="124iraj28ydjwky6j77h1sj5640l09gwwnr1xdz7fjjp8w0yhhiv"; depends=[coda Rcpp]; }; rbart = derive2 { name="rbart"; version="1.0"; sha256="1byfm1ycw9nfhdblqklyn8pxn6b9q5fa3inbgfpynqpsid97ig35"; depends=[Rcpp]; }; rbefdata = derive2 { name="rbefdata"; version="0.3.5"; sha256="12mcqz0pqgwfw5fmma0gwddj4zk0hpwmrsb74dvzqvgcvpfjnv98"; depends=[RColorBrewer RCurl rjson rtematres wordcloud XML]; }; rbenchmark = derive2 { name="rbenchmark"; version="1.0.0"; sha256="010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"; depends=[]; }; rbgm = derive2 { name="rbgm"; version="0.1.0"; sha256="0jw7p6l0il0fz5rq7ra731xzj06aqqvm9s1r0hwa4rd74lkg198n"; depends=[dplyr geosphere raster reproj rlang sfheaders sp]; }; rbhl = derive2 { name="rbhl"; version="0.9.0"; sha256="0n9jxyrpq1s0yq13ylkhm0qcjlm8b25p19vpxv2s4wxan758zypd"; depends=[crul jsonlite plyr tibble xml2]; }; rbi = derive2 { name="rbi"; version="0.10.3"; sha256="09hqv235fry60nqvd1is8n7szkq96w160xpw2pdxqdxvlh52cf2r"; depends=[data_table ncdf4 processx reshape2]; }; - rbin = derive2 { name="rbin"; version="0.1.2"; sha256="0kiad4l0qplzxqx6zx5fp48lq5g6l80qgydfri0vh3giadzcmsp7"; depends=[DescTools dplyr forcats ggplot2 magrittr miniUI recipes rlang rstudioapi shiny tibble]; }; - rbiouml = derive2 { name="rbiouml"; version="1.9"; sha256="01ysjq49nhawp0r2by7b15s4b7bzsbn2xhdcyyrh38vrl04rpf57"; depends=[RCurl RJSONIO]; }; - rbison = derive2 { name="rbison"; version="0.8.0"; sha256="0x2yiq1wvm6mzmhfa3ds8mmhidv91hxi14nhz4nib6nmna3c9al2"; depends=[crul data_table dplyr ggplot2 jsonlite mapproj plyr sp]; }; + rbi_helpers = derive2 { name="rbi.helpers"; version="0.3.2"; sha256="1inbf3kpl4y46m7v36akrr24112y4sd3d8yqia16i32wxf53wql5"; depends=[data_table lubridate Matrix rbi reshape2]; }; + rbibutils = derive2 { name="rbibutils"; version="1.0.3"; sha256="04q43sjysy4f946d6zw303m7aqywl7x2s6xfljvw7p4i4za9vn4n"; depends=[xml2]; }; + rbin = derive2 { name="rbin"; version="0.2.0"; sha256="18g6s4m0yc1bzrymk8km553kcwi4vj16b6mxw2lmv48z7243iq87"; depends=[data_table ggplot2]; }; + rbiom = derive2 { name="rbiom"; version="1.0.2"; sha256="0zg1ibxz3h9mmb4s2gwlliahni6dgqqn849pcxcyhpzyc81av85y"; depends=[magrittr openxlsx plyr R_utils Rcpp RcppParallel rjson slam]; }; + rbiorxiv = derive2 { name="rbiorxiv"; version="0.2.0"; sha256="1xb0ndwfnk26qifnc7fy6jy6sm30p5264w1lk8mayj90nf9b1aks"; depends=[httr jsonlite]; }; + rbiouml = derive2 { name="rbiouml"; version="1.10"; sha256="12p6715dji0na80icc5qlfjvlwr5p5h4s4156kpgd5xz0d6rgaxx"; depends=[RCurl RJSONIO]; }; + rbison = derive2 { name="rbison"; version="1.0.0"; sha256="0g586hsqci4amci10zjq6xpjvxfjr6rv5i63vp85v3z6bkwfamwr"; depends=[crul data_table dplyr ggplot2 jsonlite mapproj plyr sp tibble]; }; rbit = derive2 { name="rbit"; version="1.0.0"; sha256="09ywr711gv0vgfims2vfcxk3rnd0iadzlksil0q9159yarapfc59"; depends=[R6]; }; rbitcoinchartsapi = derive2 { name="rbitcoinchartsapi"; version="1.0.4"; sha256="0r272jvjh3rzch8dmn4s0a5n5k6dsir7pr4qswzfvafqjdiwjajz"; depends=[RCurl RJSONIO]; }; rblt = derive2 { name="rblt"; version="0.2.4.5"; sha256="1pfg8sgm532czz3lhpx7dmg5zik3bc0p4vdq9s0qk5zgq7nnm9sj"; depends=[data_table dygraphs hdf5r shiny xts]; }; rbmn = derive2 { name="rbmn"; version="0.9-3"; sha256="08rcxvxi1wav2ysnp5ydkyinykcjw3vwb56g8zdx9ziqbd7cwkgv"; depends=[MASS]; }; - rbokeh = derive2 { name="rbokeh"; version="0.5.0"; sha256="1lpbph6bhh9rf5rs0ivp8dchx8i8ylz5nr7xc2xv9bnwlwj35729"; depends=[digest ggplot2 gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; + rbokeh = derive2 { name="rbokeh"; version="0.5.1"; sha256="122slyj1a4v7ph1zdcradzkr4hjncg34i2ld82mbk8nf72ra7ss8"; depends=[digest ggplot2 gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; rbounds = derive2 { name="rbounds"; version="2.1"; sha256="1h334bc37r1vbwz1b08jazsdrf6qgzpzkil9axnq5q04jf4rixs3"; depends=[Matching]; }; rbraries = derive2 { name="rbraries"; version="0.2.0"; sha256="00fl1vr8m1lalib1j35d7g0ybm4wv6qvy0gzl37ij2cc844ij6jd"; depends=[crul data_table fauxpas jsonlite tibble]; }; rbridge = derive2 { name="rbridge"; version="1.0.2"; sha256="0m4c61rdrhq1jw3rwq2ld29g5dchbk4sfpnq0wmwbvzhdjq76plc"; depends=[dplyr Matrix Rcpp RcppArmadillo]; }; + rbscCI = derive2 { name="rbscCI"; version="0.1.0"; sha256="12r1f4yy5hx0sx1q77yzq3wxhbx8zgj9d1jfpa1hagvwcyd8bdxb"; depends=[BH Rcpp]; }; rbtc = derive2 { name="rbtc"; version="0.1-6"; sha256="1z5p1jn5b0hzwcbdpiwj224h45x01bbsgkskllir5j13l416561p"; depends=[gmp httr openssl rjson]; }; rbtt = derive2 { name="rbtt"; version="0.1.0"; sha256="1gbsb0vmqxcl28c5nn0rz95bxrvl7i0b17lq90cj5ahbk6x9jblz"; depends=[data_table]; }; rbundler = derive2 { name="rbundler"; version="0.3.7"; sha256="0wmahn59h9vqm6bq1gwnf6mvfkyhqh6xvdc5hraszn1419asy26f"; depends=[devtools]; }; @@ -12555,7 +13028,7 @@ in with self; { rbw = derive2 { name="rbw"; version="0.2.0"; sha256="01y33gbljb6bvbdsr42vgfi75sywhwn313y5jv1y4kkc4iqzag1r"; depends=[rlang]; }; rcane = derive2 { name="rcane"; version="1.0"; sha256="0p2mgkq6fh0n289n2h19c52lnqxl05wvpmd6nwvgnjqwa4wwpa7r"; depends=[]; }; rcanvec = derive2 { name="rcanvec"; version="0.2.1"; sha256="0gsk2cfiysxjw2lrnpl2l524lvhh9nhnyyh79n8p7vykyqj711yn"; depends=[rgdal sp]; }; - rcarbon = derive2 { name="rcarbon"; version="1.3.1"; sha256="1qdmbvp758758ny2d4y0xi5gdhzvjmwvxh6yjhmavhb454fys0yi"; depends=[doParallel foreach knitr sp spatstat]; }; + rcarbon = derive2 { name="rcarbon"; version="1.3.3"; sha256="11qdqzxjjawxxkkamamb82wf6kdqgfvxcjbbmbzhg948dj4rfccv"; depends=[doSNOW foreach iterators knitr snow sp spatstat]; }; rcartocolor = derive2 { name="rcartocolor"; version="2.0.0"; sha256="08ljaag2mnhz2671zvwji1sp003z94lz30vjidmybm9fp8piqw5g"; depends=[ggplot2 scales]; }; rcbalance = derive2 { name="rcbalance"; version="1.8.5"; sha256="15qlk3cqwsvixl17l1fxcajrabmz4y7q5gz0a1pd66f6i1xskcqq"; depends=[MASS plyr]; }; rcbsubset = derive2 { name="rcbsubset"; version="1.1.4"; sha256="0sfsmnxs4c8blzg0bb2ffb2xcsjv7pp39arnda988f7b2aas59wj"; depends=[MASS plyr]; }; @@ -12566,31 +13039,31 @@ in with self; { rcdk = derive2 { name="rcdk"; version="3.5.0"; sha256="05bz2pnvfci8sd9l4i0jay8rwvfnw87r9xqzvq5306mfbhik20fy"; depends=[fingerprint iterators itertools png rcdklibs rJava]; }; rcdklibs = derive2 { name="rcdklibs"; version="2.3"; sha256="16ijvzsc1irpz1z2xd82i2saafsvpn0x5lr54c5gx9bfb35gacyp"; depends=[rJava]; }; rchallenge = derive2 { name="rchallenge"; version="1.3.2"; sha256="1qib09vlajw62zdhx8gkmmhlgc8k0dqdxx8ai8zdwxhfff253glc"; depends=[knitr rmarkdown]; }; - rcheology = derive2 { name="rcheology"; version="3.6.3.0"; sha256="16ci41541by8plw87wl754clqn241fhpzc6658jsvz2yvnhkx0wf"; depends=[]; }; + rcheology = derive2 { name="rcheology"; version="4.0.2.0"; sha256="08345syv8cca5fhxcs8g0vifrvz1ii5pb5djlklcyqnw7ly52i9h"; depends=[]; }; rchess = derive2 { name="rchess"; version="0.1"; sha256="0qnvvvwcl02rmqra9m7qnhy40cbavswbq6i0jm47x6njmr1gpfhy"; depends=[assertthat dplyr ggplot2 htmlwidgets plyr R6 V8]; }; rchie = derive2 { name="rchie"; version="1.0.2"; sha256="1m89mwq5f81yr2vc3wvnxkpm04bad11sx5fllcd3yy8ilghmbfp6"; depends=[jsonlite V8]; }; rcicr = derive2 { name="rcicr"; version="0.3.4.1"; sha256="1sa13sbhx64cf8szr2811iq4a1asb8d3k0igxw6fbssij2lwbxzp"; depends=[aspace dplyr jpeg matlab scales]; }; - rcites = derive2 { name="rcites"; version="1.0.1"; sha256="1rpalysmv0c7f23aj3k6h80cw9cmsv0vn82da07km5qfll5pis6y"; depends=[cli httr jsonlite]; }; + rcites = derive2 { name="rcites"; version="1.1.0"; sha256="185s26pzgg3y3d890q5mk1rn75yipd6kfgnhbafnqgk7qy09v8lx"; depends=[cli httr jsonlite]; }; rcitoid = derive2 { name="rcitoid"; version="0.1.0"; sha256="11iqdj1q983w28fh17rqvmhs41ks09b24p408nl7hz4iqg9c7lpi"; depends=[crul curl fauxpas jsonlite]; }; rclipboard = derive2 { name="rclipboard"; version="0.1.2"; sha256="04vkxz2wqb3q3igjqgaaim3sb71h046c2b8rhvg51hkp1win8s5w"; depends=[shiny]; }; rcmdcheck = derive2 { name="rcmdcheck"; version="1.3.3"; sha256="1d4kzgfqy72r6b7bn1j4znyksrycgypx1jjvpv9lrmvn37mpkdhs"; depends=[callr cli crayon desc digest pkgbuild prettyunits R6 rprojroot sessioninfo withr xopen]; }; rco = derive2 { name="rco"; version="1.0.1"; sha256="0sjfgblvrnd1jmvqgxc9xm94c46kmr9syxynx9zdd9gsqcwc6hza"; depends=[]; }; rcompanion = derive2 { name="rcompanion"; version="2.3.25"; sha256="10x2ps110a849qgr7pggdz5436a2bzzfv774xic34fnpki32zvzs"; depends=[boot coin DescTools EMT lmtest multcompView nortest plyr]; }; - rcoreoa = derive2 { name="rcoreoa"; version="0.3.0"; sha256="0z9kllhk1j7c4sgnd88ngxv7xvr396azg9vr9p6i72ficr7flr64"; depends=[crul hoardr jsonlite pdftools]; }; + rcoreoa = derive2 { name="rcoreoa"; version="0.4.0"; sha256="0q5dprz0ag04w265bk7isd2lr61nahf223qza47m0izd9nyi9h8a"; depends=[crul hoardr jsonlite pdftools]; }; rcorpora = derive2 { name="rcorpora"; version="2.0.0"; sha256="1b8xa81mn3afadz77576vda9b0d99f1k096drxrpqd989g993aqy"; depends=[jsonlite]; }; rcosmo = derive2 { name="rcosmo"; version="1.1.2"; sha256="01a8g81ld0dy2bn0mqmpdz2bpd7g52jn67136hhvpxndnnlh384k"; depends=[cli entropy FITSio geoR mmap nnls Rcpp rgl tibble]; }; rcreds = derive2 { name="rcreds"; version="0.6.6"; sha256="1sdrdgn53kgcdnxfjs8jh0h538vb3b9ixz74lbnp54yp09jpqsri"; depends=[collectArgs digest jsonlite magrittr]; }; - rcrimeanalysis = derive2 { name="rcrimeanalysis"; version="0.4.1"; sha256="1nm6hsazjg9qg41067gn3qwlrbqf8awgwb2yczkzdm2106a0rm34"; depends=[dplyr forecast ggmap htmltools igraph KernSmooth leaflet leafsync lubridate pals raster Rcpp rgdal sp]; }; + rcrimeanalysis = derive2 { name="rcrimeanalysis"; version="0.4.2"; sha256="1b41f636bkr0mr72klyad4fyx5zf129c9h1523rkfkyxrlf527yx"; depends=[dplyr forecast ggmap htmltools igraph KernSmooth leaflet leafsync lubridate pals raster Rcpp rgdal sp]; }; rcrossref = derive2 { name="rcrossref"; version="1.0.0"; sha256="1743qy5q0n2ij7x88nkk99w59vnl7g9fwpkwgb3a3s235f6lb4df"; depends=[bibtex crul dplyr DT jsonlite miniUI plyr R6 shiny stringr xml2]; }; rcrtan = derive2 { name="rcrtan"; version="0.1.1"; sha256="0kcp3gnjmp00i1hsjagpp0dlr6zgpc4y5ihpx93hm4m3fnzcmn7x"; depends=[dplyr magrittr purrrlyr tibble tidyr]; }; rcrypt = derive2 { name="rcrypt"; version="0.1.1"; sha256="002r5wr0bmqbj014iz8wacj883j6gqcxc786m6p9a7zdrjpx2pqi"; depends=[]; }; rcube = derive2 { name="rcube"; version="0.5"; sha256="1162y7fs3fsbb5jj66g9kvxxhggprlifrabqbb9lqm8rrdwhz3r9"; depends=[magrittr]; }; - rcv = derive2 { name="rcv"; version="0.2.1"; sha256="0i5z3a918ykl56dv3dvzwwcv550gvjjdg5kfh63jlpaxn9ybmv3f"; depends=[dplyr readr stringr tibble tidyr]; }; rdatacite = derive2 { name="rdatacite"; version="0.5.2"; sha256="07zbxr89fxx9nlp5w7n60rjm3prck08h0fjrq0pnpkbnnkx9cv9a"; depends=[crul jsonlite tibble]; }; rdataretriever = derive2 { name="rdataretriever"; version="2.0.0"; sha256="0gnvvxvlfh6j887y5w83q5kg6lqqcb0c54lfcx9qp3r28hpdlxkz"; depends=[reticulate]; }; - rdbnomics = derive2 { name="rdbnomics"; version="0.6.1"; sha256="1jvgmfa0qc3l2bp2896827vxpavc32bzby8x9z2wbyfmkk6pm985"; depends=[curl data_table jsonlite]; }; + rdbnomics = derive2 { name="rdbnomics"; version="0.6.2"; sha256="1a63nghiy2hlxx12fr5lnmv7zjqpb1bbl4iq89p66k42cpyn8v9l"; depends=[curl data_table jsonlite]; }; rdd = derive2 { name="rdd"; version="0.57"; sha256="1lpkzcjd18x51wzr4d1prdjfsw5978z6zap65psfs02nszy69nqp"; depends=[AER Formula lmtest sandwich]; }; - rddensity = derive2 { name="rddensity"; version="1.0"; sha256="0v94izsghy35b33dq5b28p2lqs1fw1snyipdf9vgjz5s3qkzjkd8"; depends=[ggplot2 lpdensity]; }; + rddensity = derive2 { name="rddensity"; version="2.0"; sha256="1fsc3b6h09y3648p8dwdbdlncj1vii7ljvgrdjb4mkq3bl1x137j"; depends=[ggplot2 lpdensity]; }; + rddtools = derive2 { name="rddtools"; version="1.4.0"; sha256="04xxrhfxhamzjprbr5g538h4yb0n10mm48pi8ak4m6y7b1gd5a7s"; depends=[AER Formula ggplot2 KernSmooth lmtest locpol np rdd rdrobust rmarkdown sandwich]; }; rde = derive2 { name="rde"; version="0.1.0"; sha256="1zw9gdh90hl0wc5c0xwl5x7566r611wk73sbqdmpzpswjyyl9aqm"; depends=[clipr]; }; rdefra = derive2 { name="rdefra"; version="0.3.8"; sha256="00wgcc0mzjvinvj767mzrx8idq8w7b7bi4d82hvldbki9hadjh7d"; depends=[dplyr httr lubridate rgdal sp tibble xml2]; }; rdetools = derive2 { name="rdetools"; version="1.0"; sha256="0pkl990viv7ifr7ihgdcsww93sk2wlzp2cg931wywagfp8dijd02"; depends=[]; }; @@ -12599,34 +13072,34 @@ in with self; { rdhs = derive2 { name="rdhs"; version="0.6.3"; sha256="01pjb9wjad22rv85z0rxrh06wyzksy0xgd656xd3lck0ixpr88hx"; depends=[digest foreign getPass haven httr iotools jsonlite magrittr qdapRegex R6 rappdirs rgdal storr xml2]; }; rdi = derive2 { name="rdi"; version="1.0.0"; sha256="1c49mkxfyxhqz8fc155kgy1k5by0y2c1ahy8k6pn9k8l1j4m4m2q"; depends=[beanplot gplots pdist stringr]; }; rdian = derive2 { name="rdian"; version="0.1.1"; sha256="0i4ljcqhmrwrqbhi321iffypxj4kndx47ssljnixr3fx2lmqh0q1"; depends=[curl httr]; }; - rdist = derive2 { name="rdist"; version="0.0.4"; sha256="058i2cxav96ipb1a1q3ffak0mjgyrvvcz8ivlap4qbrnn3x13jzl"; depends=[Rcpp RcppArmadillo]; }; - rdiversity = derive2 { name="rdiversity"; version="1.2.1"; sha256="0j67b9mnq2xfbi2hrn1x9vgdv63779d0rcbzndljh37b1x5zlr22"; depends=[ape ggplot2 ggthemes phangorn phytools plyr reshape2 tibble tidyr]; }; - rdlocrand = derive2 { name="rdlocrand"; version="0.5"; sha256="1dadb3yazk9kn051rswq3568m77x44485l2268ahm0im6bj2i7al"; depends=[AER sandwich]; }; - rdmulti = derive2 { name="rdmulti"; version="0.4"; sha256="11qh5sdnxmpk1bhkcb4bq7qmj0hvvc9p4hq0pwnkgq4vfj6gsi2d"; depends=[rdrobust]; }; + rdist = derive2 { name="rdist"; version="0.0.5"; sha256="1jb6dgp1f3307h96v20pjxpkxfz08ij98w0yj5cdx1g2kwfl0h0w"; depends=[Rcpp RcppArmadillo]; }; + rdiversity = derive2 { name="rdiversity"; version="2.0"; sha256="1x9500iq9dkqpq79m1fzl2f1c7bbhrq2v0kqz8wx6dd6dlkgkpqn"; depends=[binaryLogic reshape2]; }; + rdlocrand = derive2 { name="rdlocrand"; version="0.7"; sha256="0sbb5ba1w6qc5m33kpb5mgskvp8wz82zr1w58qfazs90pvksv13z"; depends=[AER sandwich]; }; + rdmulti = derive2 { name="rdmulti"; version="0.5"; sha256="138ikxs1jg6w0h0xha60h7c0k1aj40f8qix3qhbyhk3dxgqi11dz"; depends=[ggplot2 rdrobust]; }; rdnb = derive2 { name="rdnb"; version="0.1-3"; sha256="0g85masa1a2c26l12i6ck1hdjvm2saqdlqnwb2p29rm9spmc04qg"; depends=[brew httr stringr xml2]; }; rdoc = derive2 { name="rdoc"; version="0.1.0"; sha256="0ac6413jyrr7m25z30n3bpiafsvjx38ik6rrjzsiqxrfp41j6l9x"; depends=[cli crayon prettycode R6]; }; + rdomains = derive2 { name="rdomains"; version="0.1.9"; sha256="0pfz438qiz8mqh391nlhz2q2r8830y5i0sg1ajhppj1hq2cgqqbg"; depends=[aws_alexa curl devtools glmnet httr jsonlite Matrix rlang urltools virustotal XML xml2]; }; rdoxygen = derive2 { name="rdoxygen"; version="1.0.0"; sha256="16907969w66xvy62k45rw10qfv4x8z6jkkc6i97vppkgnlvf4d4b"; depends=[devtools]; }; - rdpla = derive2 { name="rdpla"; version="0.2.0"; sha256="0d32bp68z1agymcmjwnds4fkblhjrcx8i2q6f5b7sl4kdfdbjchf"; depends=[crul data_table hoardr jsonlite tibble]; }; rdpower = derive2 { name="rdpower"; version="0.5"; sha256="1kqfxh2g9dar130d0wld64iyd6iq51s2zrsjrprg1s3ssgi9xmb6"; depends=[rdrobust]; }; - rdrobust = derive2 { name="rdrobust"; version="0.99.7"; sha256="07v7cllcwmjgn8iscgm8lmxp1m6c9v6ikph4g3r4d4prbap7p556"; depends=[ggplot2]; }; - rdrop2 = derive2 { name="rdrop2"; version="0.8.1"; sha256="1f4ysck58dm40k4wn9nfjaxym0mbgfkm146iidfkz7agmd1x0xyl"; depends=[assertive digest dplyr httr jsonlite magrittr purrr]; }; - rdryad = derive2 { name="rdryad"; version="0.4.0"; sha256="19ca618hymvpk5byrrglc6iidsgm6wn43fypspssa7b3r1c4xhdc"; depends=[crul curl data_table oai solrium tibble xml2]; }; - rdtLite = derive2 { name="rdtLite"; version="1.2.1"; sha256="0mm2psp8j1dfvah5d68a721kl3klins038nwgbv4s6x38a9amvq6"; depends=[curl digest ggplot2 gtools jsonlite knitr provSummarizeR provViz rmarkdown sessioninfo stringi XML]; }; - rdwd = derive2 { name="rdwd"; version="1.3.1"; sha256="0pz2574rbsvg79n98ndvmhxxpk76qlq9qyv052y74871mj6dkzff"; depends=[berryFunctions pbapply]; }; + rdrobust = derive2 { name="rdrobust"; version="0.99.8"; sha256="0ihaz24xqky78jl5w17x71bbndh2ldhhqkk2cifhil4m4hn2cs38"; depends=[ggplot2]; }; + rdrop2 = derive2 { name="rdrop2"; version="0.8.2.1"; sha256="02rhcq1vn349ddjkqamxb0wjb3z3m4wzkvin1mprcz4fzrjxgbdr"; depends=[assertive digest dplyr httr jsonlite magrittr purrr]; }; + rdryad = derive2 { name="rdryad"; version="1.0.0"; sha256="00f1qwsbwg5jggm5b83nhk1lxyw272rv2kg77bcwqvlf3074c3mz"; depends=[crul curl hoardr jsonlite mime tibble zip]; }; + rdtLite = derive2 { name="rdtLite"; version="1.3"; sha256="1njn6x2k03qxmb96d5sl7jz0xq5wabbixn9xy55ypw8g1k0cgmd1"; depends=[curl digest gtools jsonlite knitr provSummarizeR provViz rlang rmarkdown sessioninfo stringi XML]; }; + rdwd = derive2 { name="rdwd"; version="1.4.0"; sha256="0ic1l65baam1qba0z784isnrfx7wg61bmfr883addx9d7bcf76nw"; depends=[berryFunctions pbapply]; }; rdwplus = derive2 { name="rdwplus"; version="0.1.0"; sha256="1y4dnm2bb0w6pim4h79mv2km88s78vhsn5fhs7z45m0564hgk0x2"; depends=[raster rgrass7]; }; - reReg = derive2 { name="reReg"; version="1.2.1"; sha256="0nfi02wlmb1n8j134qgv3p03z2j200kkrwhvd5i17ybhzpwfndri"; depends=[BB ggplot2 MASS nleqslv reda scam SQUAREM survival]; }; - reactR = derive2 { name="reactR"; version="0.4.2"; sha256="11rahxskch0r5hlqs7iy285dlhrmzm4vl18kbakx4jggwjqh61f5"; depends=[htmltools]; }; - reactable = derive2 { name="reactable"; version="0.1.0.1"; sha256="0pd9l1dnkglbncr2blbrrz6np69y75rj8fsb6zcw7qm95h579nm3"; depends=[digest htmltools htmlwidgets jsonlite reactR]; }; + reReg = derive2 { name="reReg"; version="1.3.0"; sha256="0nj1zvl3hyh5g1ql9d8afax84dsdfc340j1b74wsknriyx4izzvg"; depends=[BB ggplot2 MASS nleqslv Rcpp RcppArmadillo reda rootSolve scam SQUAREM survival]; }; + reactR = derive2 { name="reactR"; version="0.4.3"; sha256="0wwqyvgvzp6q3zzd4l6s0jz6z7jm3khlcxp0ahhv5xm07z3ygk2w"; depends=[htmltools]; }; + reactable = derive2 { name="reactable"; version="0.2.0"; sha256="037d3za9r9pa5isn7aqi4jzw43ki6i8aq9vir3fmhzwn6lja3z72"; depends=[digest htmltools htmlwidgets jsonlite reactR]; }; reactlog = derive2 { name="reactlog"; version="1.0.0"; sha256="1pajxd9k208s06sava2gqip22pzwlyslnfvkbkfw47mp4wb7zmk9"; depends=[jsonlite]; }; read_dbc = derive2 { name="read.dbc"; version="1.0.5"; sha256="1vrvxkcrk3iw5am9rsadxzf0wsr7z2mdpa5wb0v9jbhda710b4yf"; depends=[foreign]; }; - read_gb = derive2 { name="read.gb"; version="1.6"; sha256="17py6al9cwq4jmab7k2164f7hi8943gi8a50d8zpn1xms9l2cnld"; depends=[]; }; - readABF = derive2 { name="readABF"; version="1.0.1"; sha256="0w85v8dl337lsyfad3hxwavma1gnhi4wyszdj8npaz37y12nk2gy"; depends=[]; }; + read_gb = derive2 { name="read.gb"; version="2.0.1"; sha256="049515v9pyxmarzy51m5wpbxdzp7iq5m5m20ilmywfrig7hz8jpl"; depends=[]; }; + readABF = derive2 { name="readABF"; version="1.0.2"; sha256="1lyjl3j62nrsml9vmgwbach9qm8mh2d2pxjj8sfbkkw79krvdnsd"; depends=[]; }; readBrukerFlexData = derive2 { name="readBrukerFlexData"; version="1.8.5"; sha256="1qmimfxwh6d7s5qrnnk20i2f9l5j1ci3wpfs3qlmggz69jzf589m"; depends=[]; }; readHAC = derive2 { name="readHAC"; version="1.0"; sha256="0z80ai6xfswwgdfh83l9sq279c97n0wz25bk2l7xfb6w0sndzq53"; depends=[]; }; - readJDX = derive2 { name="readJDX"; version="0.4.29"; sha256="0hy8lcy8n2qf17b5q7q67mmv23m155nd9dcnlpgvzcr6hsify78q"; depends=[stringr]; }; + readJDX = derive2 { name="readJDX"; version="0.5.1"; sha256="1zfi3444s40vvjqdqsalvzk178c7bn6qrn03bnqc8a668labr0kj"; depends=[stringr]; }; readMLData = derive2 { name="readMLData"; version="0.9-7"; sha256="0l752j1jq37j9pdcsbmcb23b5l8fkfsbisfr3yjy3q4rxsphc7k6"; depends=[XML]; }; readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.1"; sha256="03lnhajj75i3imy95n2npr5qpm4birbli922kphj0w3458nq8g8w"; depends=[base64enc digest XML]; }; - readODS = derive2 { name="readODS"; version="1.6.7"; sha256="1nvkhjv3i6l7d15v2abxg4141hrgv2jmc4agxi2d0wv6j1fc1ya1"; depends=[cellranger readr stringi xml2]; }; + readODS = derive2 { name="readODS"; version="1.7.0"; sha256="1hi217ab7hp15jsbzi5ak57cqf8jn2rv78bnn74q72gn9mrfra7n"; depends=[cellranger readr stringi xml2]; }; readOffice = derive2 { name="readOffice"; version="0.2.2"; sha256="0dg7fwxdl41nrjqnxvh9rpz0la99iid0wy51gncjwrh3s85fj2ks"; depends=[magrittr purrr rvest xml2]; }; readabs = derive2 { name="readabs"; version="0.4.3"; sha256="11v34683d1c8dxkd3v4h67bxpzjkgp9xw06fa6ijhw1z8hsgmmy6"; depends=[curl dplyr fst hutils purrr readxl rsdmx stringi stringr tibble tidyr XML]; }; readbitmap = derive2 { name="readbitmap"; version="0.1.5"; sha256="14825906l326w59g6apy00j55jg3h5kx2r6s031f4gdkbrc7szbk"; depends=[bmp jpeg png tiff]; }; @@ -12638,39 +13111,41 @@ in with self; { readr = derive2 { name="readr"; version="1.3.1"; sha256="1wz496rw0ah433p755n3xac8gh7yzid4xgdjzd1a7wmpkgilvy9k"; depends=[BH clipr crayon hms R6 Rcpp tibble]; }; readroper = derive2 { name="readroper"; version="0.9.3"; sha256="00l731hryx0igj0x7knljs9xq4gaczmsgw2hh05ngrl9y5s528dc"; depends=[readr]; }; readsdmx = derive2 { name="readsdmx"; version="0.3.0"; sha256="188yzkjblbjly032312w0fazj7k7j4ynqfc69xpblnw4gs708sx0"; depends=[Rcpp]; }; + readsdr = derive2 { name="readsdr"; version="0.1.0"; sha256="0qwjndbhpww3xlmppc9lmvmj2w4qd0yihj053fcp7ch81dimyins"; depends=[deSolve dplyr magrittr purrr rlang stringi stringr xml2]; }; readstata13 = derive2 { name="readstata13"; version="0.9.2"; sha256="02mqwpzn7n3pqjxivnd1vlfc47xkyiywfz594x0f6vd2dym8rdwd"; depends=[Rcpp]; }; readtext = derive2 { name="readtext"; version="0.76"; sha256="1k79db2aay15gdb52cqd87wnwk0pn27y45c65741rk8rgddk7lwj"; depends=[antiword data_table digest httr jsonlite pdftools readODS readxl streamR stringi striprtf tibble xml2]; }; readtextgrid = derive2 { name="readtextgrid"; version="0.1.1"; sha256="03qrbmlpbjwx4ia0ydv6m9lwzalsas9pdhds82mg5f8ir0cd0qi6"; depends=[magrittr plyr purrr readr stringr tibble]; }; readthat = derive2 { name="readthat"; version="0.0.1"; sha256="04vnpvfa8in3gxi6nv3si59hr8hj17wq3a5n8rnpiaczg46qr1dr"; depends=[curl Rcpp]; }; - readwritesqlite = derive2 { name="readwritesqlite"; version="0.1.1"; sha256="1s0av5ijnsan9lr3szdf91hf0xwyy9m0qidp8dxh2zpm5md4ipkr"; depends=[chk DBI hms lifecycle RSQLite tibble]; }; + readwritesqlite = derive2 { name="readwritesqlite"; version="0.1.2"; sha256="1nnakxj4jsh8wcwzciksa2s1pxjwa407lzmjy4fk82f68ir9jh51"; depends=[chk DBI hms lifecycle RSQLite tibble]; }; readxl = derive2 { name="readxl"; version="1.3.1"; sha256="15mambxr8c7k2ikdfsl1w3vxvm54dsnk0cl1qvks6iig7rql3d14"; depends=[cellranger progress Rcpp tibble]; }; readxlsb = derive2 { name="readxlsb"; version="0.1.3"; sha256="1n3j2g18n908z7n275mjjha9l358z1dvyg3p8gpymb66vaz55ims"; depends=[cellranger Rcpp xml2]; }; reams = derive2 { name="reams"; version="0.1"; sha256="07hqi0y59kv5lg0nl75xy8n48zw03y5m71zx58aiig94bf3yl95c"; depends=[leaps mgcv]; }; rebird = derive2 { name="rebird"; version="1.1.0"; sha256="0l1wignhs4hsy0yshr9gh9mwy8h794injkl5f7flkl1m4c39rz8w"; depends=[assertthat dplyr httr jsonlite]; }; - rebmix = derive2 { name="rebmix"; version="2.11.0"; sha256="1rmpgzxpxk3dr0c625j5g37kvxvlqwprkixk7lwjwn4lviin3cwq"; depends=[mvtnorm]; }; + rebmix = derive2 { name="rebmix"; version="2.12.0"; sha256="173b11183hlpazzs70c3zzsg3qakswkvhq63d2bihmy2qbn680zz"; depends=[mvtnorm]; }; rebus = derive2 { name="rebus"; version="0.1-3"; sha256="0ms3dm6g0fq3jycpgjl7q7kyljxc97cczy2jj0lyviwmipdgjg9d"; depends=[rebus_base rebus_datetimes rebus_numbers rebus_unicode]; }; rebus_base = derive2 { name="rebus.base"; version="0.0-3"; sha256="1n2khszcya9k6379bdkq47xi2nw9jngiwj7z8a14wfswqydczv6y"; depends=[]; }; rebus_datetimes = derive2 { name="rebus.datetimes"; version="0.0-1"; sha256="09lv41mywm13avxb0xp8x1a2xz50zxazh3lpg27m16d4cgijmhm5"; depends=[rebus_base]; }; rebus_numbers = derive2 { name="rebus.numbers"; version="0.0-1"; sha256="0drgszz0824j49c6jk9ry0cfjky7g843ldlxrx3g2vjp0v7hznj3"; depends=[rebus_base]; }; rebus_unicode = derive2 { name="rebus.unicode"; version="0.0-2"; sha256="185313wh4zpp6addfdr78pjhxzazlfwgsddwk02zrzblf4iwzjdm"; depends=[rebus_base]; }; + recapr = derive2 { name="recapr"; version="0.4.3"; sha256="1ypmjm92mzcmn29cl4zhp1vrgan6sdqqsl3x6dbr4nypfd1dx4f9"; depends=[MASS]; }; recexcavAAR = derive2 { name="recexcavAAR"; version="0.3.0"; sha256="0b91jbgqzkgzvk658ckk639yyz1daa0xql3qgl0kzgqg68d53x20"; depends=[kriging Rcpp]; }; rechonest = derive2 { name="rechonest"; version="1.2"; sha256="0vpff8q5p6in7vjyl62bx3wmksravcg4mpx20qlgy5ia47vyhqp2"; depends=[httr jsonlite RCurl]; }; - recipes = derive2 { name="recipes"; version="0.1.10"; sha256="11f96aanrzi2v6cn49fhvf9y4cmhra63wcy6nvpv6hcfaqqmwd2g"; depends=[dplyr generics glue gower ipred lubridate magrittr Matrix purrr rlang tibble tidyr tidyselect timeDate withr]; }; + recipes = derive2 { name="recipes"; version="0.1.13"; sha256="1d3pmprkiz60w7lq5q4lpl5zlwf7fg7qghf7sq6xs1294w54gzbs"; depends=[dplyr generics glue gower ipred lifecycle lubridate magrittr Matrix purrr rlang tibble tidyr tidyselect timeDate withr]; }; reclin = derive2 { name="reclin"; version="0.1.1"; sha256="15qrdgjmclffivnljgmmipws9ks41fj4q40wnq0fk14mbv2045g2"; depends=[dplyr ldat lpSolve lvec Rcpp stringdist]; }; - recluster = derive2 { name="recluster"; version="2.8"; sha256="05g8k10813zbkgja6gvgscdsjd99q124jx31whncc4awdsgk69s4"; depends=[ape cluster phangorn phytools picante vegan]; }; + recluster = derive2 { name="recluster"; version="2.9"; sha256="1nz5w4v5hhb3qjwxixc526gqsmr1imw582l9gj2acwar4z9mixjp"; depends=[ape cluster phangorn phytools picante plotrix vegan]; }; recmap = derive2 { name="recmap"; version="1.0.7"; sha256="14mqc6kzwhcsbnkpl4hy2592rxgwpcpxwawq4x0kakbdjcskbfv8"; depends=[GA Rcpp sp]; }; recoder = derive2 { name="recoder"; version="0.1"; sha256="0wh0lqp7hfd4lx2xnmszv1m932ax87k810aqxdb6liwbmvwqnfgd"; depends=[stringr]; }; recombinator = derive2 { name="recombinator"; version="1.0.1"; sha256="1dbsqig2jjp3zypcqxf9c2brb09pv6xikmh6fhz5vgxy5wkyivks"; depends=[crayon]; }; - recommenderlab = derive2 { name="recommenderlab"; version="0.2-5"; sha256="1mhs7yniabpbjpq7w04jfrzng3apz2lcg5izjk8hjnl5pww684hk"; depends=[arules irlba Matrix proxy recosystem registry]; }; + recommenderlab = derive2 { name="recommenderlab"; version="0.2-6"; sha256="19v3f0iggvwdmi8jw2k50w9b68wnzvdcwi0d727aqlhp3w760hfj"; depends=[arules irlba Matrix proxy recosystem registry]; }; recommenderlabBX = derive2 { name="recommenderlabBX"; version="0.1-1"; sha256="042yh0h8qxj7n9hysrfdxnpb3g0zb6s5b683s7hn5mjc55q7nn4g"; depends=[recommenderlab]; }; recommenderlabJester = derive2 { name="recommenderlabJester"; version="0.1-2"; sha256="0kr9xc2gih2myn1a8h8dxxmdhibv1sjwjsvlrj9d5hvd1mgfhks5"; depends=[recommenderlab]; }; reconstructr = derive2 { name="reconstructr"; version="2.0.2"; sha256="0pzpd2l1b6y1b1lnd95lpc5s8niz7p56vkmxgyi6g6b25vh9c2vi"; depends=[openssl Rcpp]; }; recorder = derive2 { name="recorder"; version="0.8.2"; sha256="1j3fqqp5vi8z3hxqgb887v9r8x0cl5jikiyx3c7arwna7k89215a"; depends=[crayon data_table]; }; - recosystem = derive2 { name="recosystem"; version="0.4.2"; sha256="1bn6l23gqmfpr6w60ph7zgv53vy3vnq9zdy5x0a8n1yp6b0lw48x"; depends=[Rcpp RcppProgress]; }; + recosystem = derive2 { name="recosystem"; version="0.4.3"; sha256="122z5vd9yrbysyf4akkk9kfm0mcqv97g7zrp66mg47fkz8v6ak20"; depends=[Rcpp RcppProgress]; }; recurse = derive2 { name="recurse"; version="1.1.2"; sha256="0bdm2nd8cq64dwz9b2hnbjv6c3fwpy7gnmbfi6p49nf285p8y632"; depends=[Rcpp]; }; - red = derive2 { name="red"; version="1.4.0"; sha256="1z8ja8qbwgpbmy4ira9q6x482nw5rm4bksm82y0vc4gwpdxls5z3"; depends=[BAT dismo geosphere jsonlite maptools raster rgdal rgeos sp]; }; + red = derive2 { name="red"; version="1.5.0"; sha256="0hsmzw3cc3kkiaqhbn0p2fm6biqq0ka9rmv6gcv74nxjzlvl6vvp"; depends=[BAT dismo gdistance geosphere jsonlite maptools raster rgdal rgeos sp]; }; redR = derive2 { name="redR"; version="1.0.1"; sha256="0bd1jzjip6p449m9ysi4kybxqljh2wj8z9mrgyk1cy08bjivd1cd"; depends=[imager]; }; - reda = derive2 { name="reda"; version="0.5.0"; sha256="05lbhamd8z0bhc7cvpd24nmgsc5lfzidjynbi0dzbvkn2gphpdzs"; depends=[ggplot2 Rcpp RcppArmadillo splines2]; }; + reda = derive2 { name="reda"; version="0.5.2"; sha256="0anaxiskqq0lmdjaa8ac3nh772gwl6iwwzawdqpaiv571wj10s5h"; depends=[ggplot2 Rcpp RcppArmadillo splines2]; }; redcapAPI = derive2 { name="redcapAPI"; version="2.3"; sha256="1myycwdrlw1405fxc82zd8ps8bhdvf2ffsb91pia5ijf6952v8pf"; depends=[checkmate chron DBI httr labelVector lubridate readr stringr tidyr]; }; reddPrec = derive2 { name="reddPrec"; version="0.4.0"; sha256="0zmkaiivvjq8mcaz310zgjjc7y0wgsqv29bf8nhli5qawaczvb9a"; depends=[fields snowfall]; }; redist = derive2 { name="redist"; version="1.3-3"; sha256="18asjam8hvayvnfysyjzbazjn27ds7163qhdq0p9aqlx03v89aa9"; depends=[coda doParallel foreach Rcpp RcppArmadillo sp spdep]; }; @@ -12689,21 +13164,27 @@ in with self; { regclass = derive2 { name="regclass"; version="1.6"; sha256="0m974k3yhf0dgv5f1qjs8c53mam0cll3cjn35ywfrmlfla0wlhf5"; depends=[bestglm leaps randomForest rpart rpart_plot VGAM]; }; regexPipes = derive2 { name="regexPipes"; version="0.0.1"; sha256="1hk0rhvmgzcyf5cyl8hjznl3ll25kpasqikfr6nxd6ian2slvmmb"; depends=[]; }; regexSelect = derive2 { name="regexSelect"; version="1.0.0"; sha256="0xnb9qa8l63ang4r40ky4qhlrs5mbzvmj98dgij26j3mq1ys1pa7"; depends=[shiny shinyjs]; }; + regexTestR = derive2 { name="regexTestR"; version="0.1.0"; sha256="1nfzzifqvhz3cjdr93pd4iyz5hb8v42v94r89b2ikc8ycc48k75g"; depends=[config data_table DT golem htmltools pkgload processx purrr RColorBrewer rvest shiny shinyBS shinythemes stringr tidyr xml2]; }; reghelper = derive2 { name="reghelper"; version="0.3.6"; sha256="0m90q6iq2y5fjdwwplvpjymzhc8kr2cdfb2gghfrzfzxnd3m4fg7"; depends=[ggplot2 lme4 nlme]; }; + regions = derive2 { name="regions"; version="0.1.5"; sha256="007pgqyphl5nq0ym1bgz89li2pnps2kcfn7h8jkvpi36pmig5zpn"; depends=[countrycode dplyr glue magrittr purrr readxl rlang stringr testthat tidyr tidyselect]; }; registr = derive2 { name="registr"; version="1.0.0"; sha256="1ysj2ab69w6g71d1kpcwyq0py71w6h7lfhk4nzgn2dhh6k8whwbn"; depends=[dplyr ggplot2 gridExtra magrittr Rcpp RcppArmadillo tidyr]; }; registry = derive2 { name="registry"; version="0.5-1"; sha256="1k3j6dx350awamr0dwwgkhfs46vsnj4nf08iw5byq0x7n3nkdsnz"; depends=[]; }; reglogit = derive2 { name="reglogit"; version="1.2-6"; sha256="1nnn8n5sqhbd3nzmwnpmcsmaxxxaqwbna7xm7q9vk4cqz9cm9b9s"; depends=[boot Matrix mvtnorm]; }; + regmed = derive2 { name="regmed"; version="1.1.0"; sha256="17s6q36l5jnp1klpw7qb4ab80zhc31jfccr96sy2vx6qx9rr9zw9"; depends=[glasso knitr Rcpp RcppArmadillo]; }; + regmedint = derive2 { name="regmedint"; version="0.1.0"; sha256="0bd5ml9y8cxcrkkihy20n2h0g4b64w4kdzyb9caxwagvw6307sav"; depends=[assertthat Deriv MASS Matrix sandwich survival]; }; regnet = derive2 { name="regnet"; version="0.4.0"; sha256="0qb7sp464fyxn0bslkapjni3pzk7l6fdgabfbzja08flsr63r4mh"; depends=[glmnet Rcpp RcppArmadillo]; }; - regplot = derive2 { name="regplot"; version="1.0"; sha256="0v24qg6nhzxxsdgrj0s14djmmhjdbl0bd0aqb5vklvmvf3r76li4"; depends=[beanplot lme4 sm survival vioplot]; }; + regplot = derive2 { name="regplot"; version="1.1"; sha256="048w0hnd2y8k27msjhw2g4ygck6i09698qk24sz7563z82gvj52w"; depends=[beanplot lme4 sm survival vioplot]; }; regpro = derive2 { name="regpro"; version="0.1.1"; sha256="02axbq63hsqwg3q2ixr0lpsdai9q6wj57s5k1343q9m0pw90vr73"; depends=[denpro]; }; - regressoR = derive2 { name="regressoR"; version="1.1.8"; sha256="1a8whcr32sjv6lncch8y1n7xs44djm3nx90lpvh8z8r5ggc8bw21"; depends=[colourpicker corrplot dplyr DT e1071 flexdashboard gbm ggplot2 glmnet htmltools kknn neuralnet pls randomForest rattle ROCR rpart shiny shinyAce shinydashboardPlus shinyjs shinyWidgets xgboost zip]; }; + regrap = derive2 { name="regrap"; version="1.0.1"; sha256="0yrxhlam7jmxwk1v53kllv6ja1m938symfvqp84xb278r3wb1wv7"; depends=[mvtnorm]; }; + regress = derive2 { name="regress"; version="1.3-21"; sha256="0mkf1dyg0r09ifdvmc3g6b0q0h819j0kfh1cb33r1vsr8yfjvgbz"; depends=[]; }; + regressoR = derive2 { name="regressoR"; version="1.1.9"; sha256="021ld511hazlqycgp5jyrcdabk5m5n6m4jx85h91agnrm7j2n9lm"; depends=[colourpicker corrplot dplyr DT e1071 flexdashboard gbm ggplot2 glmnet htmltools kknn neuralnet pls randomForest rattle ROCR rpart shiny shinyAce shinydashboardPlus shinyjs shinyWidgets xgboost zip]; }; regrrr = derive2 { name="regrrr"; version="0.1.1"; sha256="1ibmfxw0akkrz4r0fipfqbbw4153cghj8k2xsy73lgw799ybylfk"; depends=[dplyr ggplot2 lspline magrittr MuMIn purrr robustbase scales stringr tidyr usdm]; }; regsem = derive2 { name="regsem"; version="1.5.2"; sha256="0ch057010xfsw0nqcsarzakdbiplvxaldyqlbbacspqs65ax1yk7"; depends=[lavaan Rcpp RcppArmadillo Rsolnp]; }; regspec = derive2 { name="regspec"; version="2.4"; sha256="18i6k2wqaddrc0dz7v8x3s9205dcfwanqhpnxa9hkpyqzbb17pd3"; depends=[]; }; regsubseq = derive2 { name="regsubseq"; version="0.12"; sha256="0879r4r8kpr8jd6a3fa9cifm7cv0sqzz8z1alkm1b2fr1625md3g"; depends=[]; }; regtest = derive2 { name="regtest"; version="0.05"; sha256="1wrrpp2hvkas0yc512gya3pvd0v97pn4v51k5jxkwyd1pp68zd1q"; depends=[]; }; regtools = derive2 { name="regtools"; version="1.1.0"; sha256="1kia4h4bwjjfq7jm57ihdgspbqfn683ssbzngp5r069ki931h3nb"; depends=[dummies FNN mvtnorm sandwich]; }; - rehh = derive2 { name="rehh"; version="3.1.0"; sha256="0lxy45cwq98kijzvp8dwf8khwcpqjvp6mjbim9hjzhwvm5jklji4"; depends=[rehh_data]; }; + rehh = derive2 { name="rehh"; version="3.1.2"; sha256="1bkfgsf2y3hrcbvpllyrri420mqg3r6n6fy2jhh7whi7vpz83zw9"; depends=[rehh_data]; }; rehh_data = derive2 { name="rehh.data"; version="1.0.0"; sha256="1jkvwmnnmfa7iyvrabgcfzw3vfzx0dlgq47s6yf4zayi437v4di0"; depends=[]; }; rehydratoR = derive2 { name="rehydratoR"; version="0.5.2"; sha256="1d94m9hv1l72l9lph2vzbq4qqbfcgyhv2qk82p9vb8l2ckavjzvv"; depends=[dplyr jsonlite rtweet tibble]; }; reinforcedPred = derive2 { name="reinforcedPred"; version="0.1.1"; sha256="0lf3lznzvckqg04446pvq35p31fv9ix93rxwv51zq9azk0sx42vs"; depends=[glmnet MASS refund]; }; @@ -12711,7 +13192,7 @@ in with self; { reinstallr = derive2 { name="reinstallr"; version="0.1.4"; sha256="1fcmy2cyqy4zwh815j2jbmziaiq6kypwsnj5bx0f10dlq3522m5q"; depends=[]; }; reinsureR = derive2 { name="reinsureR"; version="0.1.0"; sha256="19ayikzcq6z4i7xrlby76yy2nwvrsv6xdfrmvzyr7rz934flh8kd"; depends=[data_table dplyr ggplot2 viridis viridisLite]; }; rel = derive2 { name="rel"; version="1.4.2"; sha256="0h0146b8pnd7ai17y58agsk9kaym7fhiagl34gggaak0j1qa32wh"; depends=[]; }; - relMix = derive2 { name="relMix"; version="1.3"; sha256="0saa4gz4mghg15cbbx5y933vp41j94cdzvgkc112632dbp20bqd9"; depends=[Familias gWidgets gWidgetstcltk tkrplot]; }; + relMix = derive2 { name="relMix"; version="1.3.1"; sha256="1grapx5ayjncxxnjjxwi971g34hlvx0d06xnpn72b4f235sh4alq"; depends=[Familias gWidgets2 gWidgets2tcltk tkrplot]; }; relSim = derive2 { name="relSim"; version="0.3-1"; sha256="1d6yihapfyjlfw87l370wyfyby7ivvykx04qljffdv3hi801gn7f"; depends=[multicool Rcpp rvest stringr xml2 xtable]; }; rela = derive2 { name="rela"; version="4.1"; sha256="00ksm7zh1mpd2d5c5d823id3sxj0h3x0ccg6a40fadibvr1ay3ny"; depends=[]; }; relabeLoadings = derive2 { name="relabeLoadings"; version="1.0"; sha256="16gxdrhkaaa33hypnsacn4vd1g3lbqdl3j8p8va54v777c561g81"; depends=[]; }; @@ -12729,26 +13210,26 @@ in with self; { rem = derive2 { name="rem"; version="1.3.1"; sha256="1q4p26irhhl1lvc0ydv9wmng1y635zm16szpl7gwq1kyn2p90rai"; depends=[doParallel foreach Rcpp]; }; remMap = derive2 { name="remMap"; version="0.2-0"; sha256="1k2niiaq2lr4inrx443clff9cqqvyiiwd45k7yqjd8ixnbaa3mrk"; depends=[]; }; rematch = derive2 { name="rematch"; version="1.0.1"; sha256="0y3mshvpvz9csmq8hk8jbabx4nxlv5sckvfzvm6920ndg34xw2d4"; depends=[]; }; - rematch2 = derive2 { name="rematch2"; version="2.1.1"; sha256="13siaa8s2ji9q6hykhb2r34ag76335ypmbqr90xaqilbir0klhnh"; depends=[tibble]; }; + rematch2 = derive2 { name="rematch2"; version="2.1.2"; sha256="1fzpz8vhghw8ygwg6rsvfy3783pqk7ch029i5851lwypkplvz77y"; depends=[tibble]; }; remedy = derive2 { name="remedy"; version="0.1.0"; sha256="1lsa5az9jwy4ngjmfzcb7qj4wm8phsgajlnp5kwa4nav0g1dhb4s"; depends=[knitr rematch2 rstudioapi]; }; remindR = derive2 { name="remindR"; version="0.0.1"; sha256="0b27v2qm3z8l9vcng8f0rkphjidxkw5n017ysflx180qjizqq632"; depends=[assertthat]; }; remote = derive2 { name="remote"; version="1.2.1"; sha256="1ihzjxbvas7396cwsi9am4pl94naxa9dnhbnh8k0l5p4a50mk33w"; depends=[gridExtra latticeExtra mapdata raster Rcpp scales]; }; remoter = derive2 { name="remoter"; version="0.4-0"; sha256="1a7m63l8phv5jnazvdqdrqkaqjwqzaac5y4jm2jn0ypy4n8jvkfl"; depends=[argon2 getPass pbdZMQ png]; }; - remotes = derive2 { name="remotes"; version="2.1.1"; sha256="12qinl7jv54f2524ri13gcrv6d523rg1harpi500j676zi30fnaf"; depends=[]; }; + remotes = derive2 { name="remotes"; version="2.2.0"; sha256="1f1kdw9j1wald3fs8b3n68x1kljy07j60g3aw1aarx26ikyk9whj"; depends=[]; }; remss = derive2 { name="remss"; version="1.0.0"; sha256="0dl7iqg65qgafq7s1srcymqzvplkpzplpn6g68lb1mqirqzvgpqw"; depends=[survival]; }; renpow = derive2 { name="renpow"; version="0.1-1"; sha256="0kbfpzr17fvf5zzxpzdhvfmrqmlkba2w3rzxl5q5ac1w3h75gfhc"; depends=[]; }; rentrez = derive2 { name="rentrez"; version="1.2.2"; sha256="0ghrvh1czf2kbz7p5fh5c20wiwppg6x6fdns247fvlh6zmjl5jz5"; depends=[httr jsonlite XML]; }; - renv = derive2 { name="renv"; version="0.9.3"; sha256="02ayfgbpw4b58148dcxz31anaxncwczmxs1zzkskwj0rzhb2x60r"; depends=[]; }; + renv = derive2 { name="renv"; version="0.11.0"; sha256="0dd63jr240pg95a6p058s5kcclfmscihdy89v212msihmwvylwh3"; depends=[]; }; repeated = derive2 { name="repeated"; version="1.1.2"; sha256="19kcsj96i1zpnwfan3gz5vrzc2gqlah0wrdr9vb4vvacz45wcdfq"; depends=[rmutil]; }; repec = derive2 { name="repec"; version="0.1.0"; sha256="0alr9fbmfxmnnnn1qymy65crcycynwz435jj0vangbb4p0qhv8pm"; depends=[jsonlite]; }; repfdr = derive2 { name="repfdr"; version="1.2.3"; sha256="0jpk44arg1jib0h2w90h851bs5cd1ss32fab9bfvf9iir2jk8985"; depends=[Rcpp]; }; - replicateBE = derive2 { name="replicateBE"; version="1.0.14"; sha256="1x71wpmg1mb53jv150k8cb319rqqwnsbns05ac95hlpnkqp9jcf9"; depends=[lmerTest nlme pbkrtest PowerTOST readxl]; }; + replicateBE = derive2 { name="replicateBE"; version="1.0.15"; sha256="0al23s1mb3l7z3jypan3v34bs09hlspjxwb672na6p60nmz2mfm5"; depends=[lmerTest nlme pbkrtest PowerTOST readxl]; }; replicatedpp2w = derive2 { name="replicatedpp2w"; version="0.1-2"; sha256="0nskwkqm9z2aphpim6pvykhc3fphlsbap3r49nghkwjpngd0qzj8"; depends=[spatstat spatstat_utils]; }; replicationInterval = derive2 { name="replicationInterval"; version="2.0.1"; sha256="1jyvyqr8r2fs1cmbz7zjcc8p116bnkslvx27pqi92y5pxgqvsqvr"; depends=[ggplot2 MASS MBESS pbapply]; }; repmis = derive2 { name="repmis"; version="0.5"; sha256="0z5mjbsl24yjbl0aawr35grcal44rf2xbwv1hy7bdkms94ix79b5"; depends=[data_table digest httr plyr R_cache]; }; repo = derive2 { name="repo"; version="2.1.5"; sha256="13gdka37kbs4mp16pf65bh28f0dkyalrcrdik6lc67jw8r9h94f9"; depends=[digest]; }; repolr = derive2 { name="repolr"; version="3.4"; sha256="13kmy09c7lk8p1mkdss0krcsfb6d7zcnqpwnl38zkanvh8q3fqhm"; depends=[Matrix Rcpp RcppArmadillo]; }; - reportROC = derive2 { name="reportROC"; version="3.4"; sha256="1gcck5ids0prrrbv4hqi76swxjhbx796p4qlxbf63ys3gvdzanxr"; depends=[pROC]; }; + reportROC = derive2 { name="reportROC"; version="3.5"; sha256="1f3vdxz45bhks1pm3b41pmh8g8vr2czfr1pn4ddy4kgw5h1x3n8n"; depends=[pROC]; }; reportReg = derive2 { name="reportReg"; version="0.3.0"; sha256="0qwrpn61x69hmgln5fpc58dqfa3pba0lgjjyj0f3fh96wc9jyhq1"; depends=[nlme]; }; reportr = derive2 { name="reportr"; version="1.3.0"; sha256="0zynplxqvbmf23cm2rsz3wz2jx6mv55z94mn1k44ny3lx625cnpw"; depends=[ore]; }; reporttools = derive2 { name="reporttools"; version="1.1.2"; sha256="1i87xmp7zchcb8w8g7nypid06l2439qyrvpwsjz6qny954w6fa2b"; depends=[xtable]; }; @@ -12757,26 +13238,24 @@ in with self; { represtools = derive2 { name="represtools"; version="0.1.3"; sha256="00hnvzkkcl9d3k115i5l9gs0wah5d11amn7q62m1j158lkqlcfza"; depends=[whisker]; }; reprex = derive2 { name="reprex"; version="0.3.0"; sha256="0v7vxzs8alwz8y1cjicpimp5yimf1g9gb8x5wy3zhvrz6kk2lg10"; depends=[callr clipr fs rlang rmarkdown whisker withr]; }; reproducer = derive2 { name="reproducer"; version="0.3.1"; sha256="0clgbwfv24fjx6hj0km1nwy508dqbga8q8lyzqg801yrr8gidizd"; depends=[dplyr GetoptLong ggplot2 gridExtra httr jsonlite lme4 MASS metafor openxlsx readr reshape stringr tibble tidyr xtable]; }; - reproducible = derive2 { name="reproducible"; version="1.0.0"; sha256="1zcxdvh3x1h0jcxcv62syl0midj2kk264vkanjj2bfhn4jbbbymi"; depends=[backports crayon data_table DBI digest fastdigest fpCompare gdalUtils glue googledrive httr magrittr memoise qs quickPlot R_utils raster remotes rgdal rlang RSQLite sf sp testthat versions]; }; + reproducible = derive2 { name="reproducible"; version="1.2.1"; sha256="060f2b2rkmmscg7l0m6mzzgy6z245f97msvxphwkw9q4dh0ghiji"; depends=[data_table DBI digest fpCompare glue magrittr raster Require rlang RSQLite sp]; }; reproj = derive2 { name="reproj"; version="0.4.2"; sha256="0lxd1vsxcf0r96jkl5jrh3kyklf90wcs4a27cs6ck93x1cxjnnni"; depends=[crsmeta PROJ proj4]; }; repurrrsive = derive2 { name="repurrrsive"; version="1.0.0"; sha256="1nmy88h2bfv2bad282kbrmnkjx9d8klgzv4mm8nspm049s09ydmz"; depends=[tibble]; }; reqres = derive2 { name="reqres"; version="0.2.3"; sha256="0dly09h8dpjlmvrd1wfg1gqcqhm03ax97qr0nd1p0fg9y0pdapya"; depends=[assertthat brotli jsonlite R6 stringi urltools webutils xml2]; }; request = derive2 { name="request"; version="0.1.0"; sha256="1q7zd6q00gdqmgq7s7nq1ixmns8zn2amr5zah9rwnsn8dkllj9yh"; depends=[curl httr jsonlite lazyeval magrittr R6 whisker]; }; requireR = derive2 { name="requireR"; version="1.0.0.1"; sha256="192l7i3q7s2a6n737an3fn258agjsdzh0q2w0vc8jbz7v4f3i92d"; depends=[]; }; rerddap = derive2 { name="rerddap"; version="0.6.5"; sha256="1pmpf9jdgp71ganzslwlp5qhkxhy7snaxgbrrym7swx6v2jnwhmv"; depends=[crul data_table digest dplyr hoardr jsonlite ncdf4 tibble xml2]; }; - rerddapXtracto = derive2 { name="rerddapXtracto"; version="0.4.7"; sha256="0k4yfiyn16cf7msiy6lhfbf4s5fkfl8ddxgpi72w2kj61p6phcfv"; depends=[abind dplyr ggplot2 httr maps ncdf4 parsedate plotdap readr rerddap sf sp]; }; + rerddapXtracto = derive2 { name="rerddapXtracto"; version="1.0.0"; sha256="1xngmdhv5qf6idag6pb04p8snbrsxbrpydzqsc6lgg5035zhw96m"; depends=[abind dplyr ggplot2 httr maps ncdf4 parsedate plotdap readr rerddap sf sp]; }; rerf = derive2 { name="rerf"; version="2.0.4"; sha256="0ykgxdmkqapdpk5zwi8h1cbsvjv6jpscqpr5cjmdzdan22m09l6k"; depends=[dummies mclust Rcpp RcppArmadillo RcppZiggurat]; }; resample = derive2 { name="resample"; version="0.4"; sha256="1rckzm2p0rkf42isc47x72j17xqrg8b7jpc440kn24mqw4szgmgh"; depends=[]; }; resampledata = derive2 { name="resampledata"; version="0.3.1"; sha256="1nxjqvxxvycccmh1n7lpc4k8zmwnciicfr5rzfid1icij5fzw3ak"; depends=[]; }; - resautonet = derive2 { name="resautonet"; version="1.0"; sha256="0kp6gp79j8cc5xbwr94vf6nh41msw7sqgrz9xkjzrj4asb9yjln5"; depends=[dplyr keras magrittr Rcpp RcppArmadillo rstack]; }; - resemble = derive2 { name="resemble"; version="1.2.2"; sha256="189a6b1y720w9ff8cyqazd2d3v1msbfw8zdqr5rmilxvxmnspccs"; depends=[foreach iterators Rcpp RcppArmadillo]; }; + rescue = derive2 { name="rescue"; version="1.0.3"; sha256="0wq4ka1a7yhbjwr99ngykhn2r3czn3rqi63r6jn46pz15vnicwad"; depends=[data_table dbscan igraph irlba Matrix reticulate]; }; reservoir = derive2 { name="reservoir"; version="1.1.5"; sha256="1qvjq8j2gxp6b8m3k3822f9na8a1kbwzzsmq70m763dcq293rgiz"; depends=[gtools]; }; reshape = derive2 { name="reshape"; version="0.8.8"; sha256="0s6i0sqxg1vldxs6miv8mi0zydxbqzgpmzfiwkj8y7jix3yrfmad"; depends=[plyr]; }; reshape2 = derive2 { name="reshape2"; version="1.4.4"; sha256="1n0jrajpvc8hjkh9z4g8bwq63qy5vy5cgl2pzjardyih4ngcz3fq"; depends=[plyr Rcpp stringr]; }; - reshapeGUI = derive2 { name="reshapeGUI"; version="0.1.0"; sha256="0kb57isws8gw0nlr6v9lg06c8000hqw0fvhfjsjyf8w6zwbbq3zs"; depends=[gWidgets gWidgetsRGtk2 plyr reshape2]; }; - resourcer = derive2 { name="resourcer"; version="1.0.0"; sha256="11abgyk0xs0sb3cw0fn6nh9wzbqnijja1mhj3hsdvz9n8k196b08"; depends=[httr R6]; }; - respirometry = derive2 { name="respirometry"; version="1.0.2"; sha256="10dfy1xx2214x4lk0nxxi8c2h8j47gd8w004ic016j3m7a1vp3jd"; depends=[birk lubridate marelac measurements minpack_lm PKNCA seacarb segmented]; }; - restatapi = derive2 { name="restatapi"; version="0.7.5"; sha256="0a55k96qf807z9l8zgbpb849nm8c5iv42q7a6xm8sf2495p2jlr5"; depends=[data_table rjson xml2]; }; + resourcer = derive2 { name="resourcer"; version="1.0.1"; sha256="1bq5shdnwlg7j3z43ji7qj2ax598zmszaf2cp5374rir4ggvjdni"; depends=[httr R6]; }; + respirometry = derive2 { name="respirometry"; version="1.1.0"; sha256="16p7hx1rwwc0yr35yv8padq2a8f70mzha6jam2h4c6g90hxll3x0"; depends=[birk lubridate marelac measurements minpack_lm PKNCA seacarb segmented]; }; + restatapi = derive2 { name="restatapi"; version="0.8.6"; sha256="0350p58wbpkwp86hc6akvxmq3w5bd3qlmb7dhfh8ygiah2f8ziil"; depends=[data_table rjson xml2]; }; restfulr = derive2 { name="restfulr"; version="0.0.13"; sha256="1dk45mzrr6ka92yjz7hfhkj12kpx1wg4szv1h1mg80mgga4ganbv"; depends=[RCurl rjson S4Vectors XML yaml]; }; restimizeapi = derive2 { name="restimizeapi"; version="1.0.0"; sha256="1ss6fng5pmqg6cafc256g9ddz8f660c68ysxfan6mn4gdaigz7lb"; depends=[RCurl RJSONIO]; }; restlos = derive2 { name="restlos"; version="0.2-2"; sha256="083w1ldax8bnf3w4119damma2nz75c3ki187b0275i1mqxqrixp7"; depends=[geometry igraph limSolve rgl som]; }; @@ -12785,54 +13264,57 @@ in with self; { restriktor = derive2 { name="restriktor"; version="0.2-800"; sha256="0v7304912xhjz5bsngndvwi0y1qnk55xk9ariw2wi9msah1nm4d9"; depends=[boot ic_infer lavaan MASS mvtnorm quadprog]; }; resumer = derive2 { name="resumer"; version="0.0.3"; sha256="0ilya3v75989zqm16x69w4599ax2s5j2n6f16bmhwydrmzxs1g48"; depends=[dplyr rmarkdown useful]; }; rethinker = derive2 { name="rethinker"; version="1.1.0"; sha256="02zfx08s5xisv1v4y16iqbddi9kb3fcr249b3414fzvs4nm5as94"; depends=[rjson]; }; - reticulate = derive2 { name="reticulate"; version="1.15"; sha256="03dmnx9jhxx6vfbv2i5n6sln38kb9zkshz982pg3l9i4jjf3xns7"; depends=[jsonlite Matrix rappdirs Rcpp]; }; + reticulate = derive2 { name="reticulate"; version="1.16"; sha256="0ddx3xrlw55d8d3w7pxap618w2c5pd1n2jw4xsa185s8mf1zifkl"; depends=[jsonlite Matrix rappdirs Rcpp]; }; retimes = derive2 { name="retimes"; version="0.1-2"; sha256="019sllyfahlqnqry2gqw4w5cy4cavrqnwpwrbb25cgjpdb19raja"; depends=[]; }; retistruct = derive2 { name="retistruct"; version="0.6.3"; sha256="1zij37n2ja3yx6n1agdkb3lj42p01parcg6djv60bng9c2qq0wsl"; depends=[foreign geometry png R_matlab R6 rgl RImageJROI RTriangle sp ttutils]; }; retractcheck = derive2 { name="retractcheck"; version="1.0.0"; sha256="1c4p8afh9g359s560sswcys3manc0lqvk0aqgvd09p4rpzls2dm7"; depends=[httr plyr textreadr]; }; retrodesign = derive2 { name="retrodesign"; version="0.1.0"; sha256="173jrpzasimplv8vbm8gzpl8aibnsjkgvhz1hd75is0b2l8gnbxy"; depends=[]; }; - retrosheet = derive2 { name="retrosheet"; version="1.1.1"; sha256="1x9gh9zjb4r1nyfbcb79c656a8hzrfasdir8p968inqmr08b57v0"; depends=[data_table httr lubridate purrr readr rvest stringi stringr tibble xml2]; }; + retrosheet = derive2 { name="retrosheet"; version="1.1.2"; sha256="05i7p59w9rjnbw8rdfsm4vjg6c0k9hhgl1iz4r5ksfdpablwb4xb"; depends=[httr lubridate purrr readr rvest stringi stringr tibble xml2]; }; retry = derive2 { name="retry"; version="0.1.0"; sha256="1yfcfvszfjnvvnjcywgchyiyj3jk9nmvk3h40g6bc24xapfkfl2p"; depends=[later rlang]; }; reutils = derive2 { name="reutils"; version="0.2.3"; sha256="09dhf4s7wz3anrkzqi16abx64gk8ck2142kfd8pv71mjy3x548l7"; depends=[assertthat jsonlite RCurl tibble XML]; }; reval = derive2 { name="reval"; version="2.0.0"; sha256="1yxkyc6wdp5h3cp8i42a9cf0b1cwr4nmpd7svlp7bpfxlcnqqa0d"; depends=[doParallel foreach]; }; - revdbayes = derive2 { name="revdbayes"; version="1.3.6"; sha256="15nrmnl3g4l8yn6x1xvbfjn4fznryvgkvaqyxjr929v05rrf3fl0"; depends=[bayesplot Rcpp RcppArmadillo rust]; }; + revdbayes = derive2 { name="revdbayes"; version="1.3.7"; sha256="1p86xw7mv0jkl5wgkvpnh21nvx62cyr963iv94sc56mgkx4g8pac"; depends=[bayesplot Rcpp RcppArmadillo rust]; }; revealedPrefs = derive2 { name="revealedPrefs"; version="0.4.1"; sha256="1m8y1mj39bnf9q0n9mi0ashvb79lksx5dfkxb04qj2h5kkyxg49g"; depends=[pso Rcpp RcppArmadillo]; }; revealjs = derive2 { name="revealjs"; version="0.9"; sha256="0h4csxrcl1rzmj3g01nf0mr990zc8swrf4jvmxwqsyzx9v2cqbnc"; depends=[rmarkdown]; }; revengc = derive2 { name="revengc"; version="1.0.4"; sha256="1nipkff9zmkdi509qfdrmvsq5c643xd7bzzw5bchxd8nmfqb412i"; depends=[dplyr mipfp stringr truncdist]; }; reverseR = derive2 { name="reverseR"; version="0.1"; sha256="0pzk97q1zs5g1v4ngqd6bkwwxcp89j890nycpc99ipycbgm2r9yw"; depends=[DT knitr markdown shiny]; }; revgeo = derive2 { name="revgeo"; version="0.15"; sha256="1ns7d1817475lriss6wwgvdm6lj760p40yxqaifla13c2xb73a55"; depends=[RCurl RJSONIO]; }; + revss = derive2 { name="revss"; version="0.0.2"; sha256="1fymqmv546hs6bkcx6vjhxxywzbsccir6b6n1h3la41zskz0a6w2"; depends=[]; }; revtools = derive2 { name="revtools"; version="0.4.1"; sha256="0nms7rwpdzf3xq2incraxppha4c830gcygpbnhwjs92c836hh2f0"; depends=[ade4 modeltools ngram plotly shiny shinydashboard slam SnowballC stringdist tm topicmodels viridisLite]; }; + revulyticsR = derive2 { name="revulyticsR"; version="0.0.1"; sha256="19c911c81r6ny9c2x8va626wsfr021g58lx0iridhc3g10cd14xy"; depends=[dplyr httr jsonlite magrittr purrr tibble tidyr tidyselect]; }; reweight = derive2 { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; }; + rewie = derive2 { name="rewie"; version="0.1.0"; sha256="1ysrpd2cqmz27sjj3dh0wpg86685d708kjwiqybwjlw9ap55jb06"; depends=[lme4 MASS plm rockchalk]; }; rex = derive2 { name="rex"; version="1.2.0"; sha256="0m7bq8db3m5dhf01rw7xc7xy1ciq3m7dfgsl80p8cy4h8vqr3d06"; depends=[lazyeval]; }; - rexpokit = derive2 { name="rexpokit"; version="0.26.6.6"; sha256="13dxra3s68i499g21z9i93mbn6n8s4xay5zmvslafaccbq3q1ray"; depends=[Rcpp]; }; + rexpokit = derive2 { name="rexpokit"; version="0.26.6.7"; sha256="13zrr5qj96vh50mknlc2pl7gq1kx5ahwk3n9ij4xr67734x3mx1r"; depends=[Rcpp]; }; rfPermute = derive2 { name="rfPermute"; version="2.1.81"; sha256="0mak4r3j5vbjjkcsbxj0yg2xrbipq4rz873b02drkb769nh3d16a"; depends=[abind dplyr ggplot2 gridExtra magrittr randomForest rlang scales swfscMisc tibble tidyr]; }; rfUtilities = derive2 { name="rfUtilities"; version="2.1-5"; sha256="1anwvmxn3xrc1aqxl75rzlk4wby8l54rmkp0bgi8dgbz2l223xr0"; depends=[cluster randomForest]; }; rfVarImpOOB = derive2 { name="rfVarImpOOB"; version="1.0"; sha256="1341bicd65qw3pz1j8d6c9baj9d6s70ljdaaf87xvx8pjnajrfsw"; depends=[binaryLogic dplyr ggplot2 ggpubr magrittr prob randomForest titanic]; }; - rfacebookstat = derive2 { name="rfacebookstat"; version="2.0.2"; sha256="0szzrlszjxapn86mk29f1nn39fmkfwjslbbcmqqj2harlnccafr7"; depends=[dplyr httr jsonlite purrr stringr tidyr tidyselect]; }; + rfacebookstat = derive2 { name="rfacebookstat"; version="2.1.1"; sha256="0cza2nlpggnx0kqlyn9n0nh1appgvggm6fv97nmm5v4kyanjan50"; depends=[dplyr httr jsonlite purrr stringr tidyr tidyselect]; }; rfigshare = derive2 { name="rfigshare"; version="0.3.7"; sha256="1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq"; depends=[ggplot2 httpuv httr plyr RJSONIO XML yaml]; }; rfinterval = derive2 { name="rfinterval"; version="1.0.0"; sha256="1z7v0sbql6g2h3fr1268nj79rbx1d33hjfaraxhbikrjgb8mbp0w"; depends=[MASS ranger]; }; rfishbase = derive2 { name="rfishbase"; version="3.0.4"; sha256="1km3xjbf3l81sfmmjs55criq4xw6l3xa74f8g1rxsbr5bci9xlia"; depends=[dplyr gh magrittr memoise purrr readr rlang stringr]; }; rfisheries = derive2 { name="rfisheries"; version="0.2"; sha256="16j3hn1py8khqadmh81qsg76c62wzqkaq3fn39z0z5mgynmcm62j"; depends=[assertthat data_table ggplot2 httr rjson]; }; - rfishnet2 = derive2 { name="rfishnet2"; version="0.1.0"; sha256="054cdgffy56yf5i0wy6kkyc68lim3zlk9czi6k5cy87lfjzcjqs9"; depends=[ggplot2 pracma sf]; }; - rflexscan = derive2 { name="rflexscan"; version="0.2.0"; sha256="008xpbdqix18lwdqcx0mixwhv8v47kzpkblr53igp5766l04nfyj"; depends=[igraph Rcpp rgdal sp]; }; + rfishnet2 = derive2 { name="rfishnet2"; version="0.2.0"; sha256="0g90h4353kp7szv3971kb4l5x3x08qx4f9ln85n5g3b3zdg77dkz"; depends=[dplyr ggplot2 pracma rworldmap sf]; }; + rflexscan = derive2 { name="rflexscan"; version="0.3.0"; sha256="12fgpfzx86sci9hmb4sa5ip0j3n63nv0xx4ylwcjx0rg1dx9366d"; depends=[igraph Rcpp rgdal sp]; }; rflights = derive2 { name="rflights"; version="0.1.103"; sha256="1gxfsc3dhlzy6bpqjdxk5x309jmjgvxr8d9amnhrjdygzj6icf18"; depends=[httr]; }; - rfm = derive2 { name="rfm"; version="0.2.1"; sha256="0p3y5pkxlm59jxwzyf6c5x9g8vbgvyn5d8j793szd075m11gk099"; depends=[dplyr ggplot2 ggthemes lubridate magrittr RColorBrewer rlang tibble tidyr xplorerr]; }; + rfm = derive2 { name="rfm"; version="0.2.2"; sha256="1s8h9ll4l5xq3m7ib83zrab49p5q4wclk8qiy2hgjr2hq1sb7wak"; depends=[dplyr ggplot2 ggthemes lubridate magrittr RColorBrewer rlang tibble tidyr xplorerr]; }; rfml = derive2 { name="rfml"; version="0.1.0"; sha256="133adpfjpp14m47841k6ybq9lrvby9bxgr5zs4i3akjr2575nq1j"; depends=[httr jsonlite PKI XML]; }; rfoaas = derive2 { name="rfoaas"; version="2.1.0"; sha256="0w6m3lvfb60a2zfvyc0ksnfllb2ndy45b301vk9f3nr27lxdz6dm"; depends=[httr]; }; rfordummies = derive2 { name="rfordummies"; version="0.1.4"; sha256="03y4kzf18xwk41dm1nzqqqk0aflwh1mcgfnh0lbr0r7hnsy3a77x"; depends=[openxlsx]; }; rforensicbatwing = derive2 { name="rforensicbatwing"; version="1.3.1"; sha256="1i521h2nmlkhcxfxqir8jfjv0llwr6cz0ck5w6hzplk48044bn16"; depends=[Rcpp]; }; rfviz = derive2 { name="rfviz"; version="1.0.0"; sha256="0rzyy7r2ybqjnp1g5bbkxydpa93h8q4r71kdaj77r475m2i4kb6b"; depends=[loon randomForest]; }; rgabriel = derive2 { name="rgabriel"; version="0.7"; sha256="1c6awfppm1gqg7rm3551k6wyhqvjpyidqikjisg2p2kkhmyfkyzx"; depends=[]; }; - rgbif = derive2 { name="rgbif"; version="2.2.0"; sha256="143ais0zviz015yzqax3jx47g277h9kfybwsaapgzadhap7paaja"; depends=[crul data_table geoaxe ggplot2 jsonlite lazyeval magrittr oai tibble whisker wicket xml2]; }; - rgdal = derive2 { name="rgdal"; version="1.4-8"; sha256="1jd691amf3ghznq5im15gvhl6v6k25klpl75m4ngrqf9xlxaa3as"; depends=[sp]; }; + rgbif = derive2 { name="rgbif"; version="3.2.0"; sha256="0k94yk6irrm4w99dlnr8hka09110b5b3kdxvw10vna3b5ca9pncc"; depends=[conditionz crul data_table geoaxe ggplot2 jsonlite lazyeval magrittr oai R6 tibble whisker wicket xml2]; }; + rgdal = derive2 { name="rgdal"; version="1.5-16"; sha256="0rwlsafqxgqflfid4ciaa9qz3f75fgw8hilhaqj558gdxg8bzigp"; depends=[sp]; }; rgdax = derive2 { name="rgdax"; version="1.0.0"; sha256="16ph6n1nyl2v2w51ih6wzkpw0j0hfa3f60q1g6p9zis59j0rh7d9"; depends=[digest httr jsonlite RCurl]; }; rgen = derive2 { name="rgen"; version="0.0.1"; sha256="0gl82v09q1ha58wd1014s46wzkx1yf348bc7jkl6s4qdc6c4vsb8"; depends=[]; }; + rgenius = derive2 { name="rgenius"; version="0.1.0"; sha256="1gpglnhicyv16ym224wzaw52w9xr63slm75wvidl3z14izzyy7ga"; depends=[doParallel dplyr foreach httr purrr rvest stringr tibble]; }; rgenoud = derive2 { name="rgenoud"; version="5.8-3.0"; sha256="0p93wf6ghgz2nifxbscb6bhahh5jd2ba7nh1c2mb6fmbxnsi3swv"; depends=[]; }; - rgeolocate = derive2 { name="rgeolocate"; version="1.2.0"; sha256="0v83ldn6jh0jg6vnx3i8fc2nxp00vj63bkywr3dhpd11dj9l22hn"; depends=[httr Rcpp]; }; + rgeolocate = derive2 { name="rgeolocate"; version="1.3.1"; sha256="1ikharp5f0ddh5wx1a8xf46fcwpz9xc4vl7s386h0jmkph1s0072"; depends=[httr Rcpp]; }; rgeopat2 = derive2 { name="rgeopat2"; version="0.3.9"; sha256="0l0sqkvjkzp4lmyk55l7zc02y04sa43cps47005gq8c38kyks45k"; depends=[readr sf stringr]; }; - rgeoprofile = derive2 { name="rgeoprofile"; version="0.1.1"; sha256="0frpipmmhywbahcyj5rhypp9qxqkp6xkdj6sn8w1ipw6gv02zp7b"; depends=[aspace geosphere leaflet pals RANN raster sp splancs]; }; - rgeos = derive2 { name="rgeos"; version="0.5-2"; sha256="0ajrrxfwfp184c6rnby3dq54hzp3rrx3px72dn7gbdn6c4li2bqz"; depends=[sp]; }; + rgeoprofile = derive2 { name="rgeoprofile"; version="0.2.0"; sha256="1k5nxvdl46b77sshzvzqhgl0s38ng63z53z17jmfdyf4wwzrnhah"; depends=[aspace geosphere leaflet pals RANN raster sp spatstat splancs]; }; + rgeos = derive2 { name="rgeos"; version="0.5-3"; sha256="02v0d2dw4ra3c7f3imkdarqp8b8dcxyzspxgsmjsc6df23hm8x1m"; depends=[sp]; }; rgexf = derive2 { name="rgexf"; version="0.16.0"; sha256="1vj5ha1qx0xzflchxf25ycys6clfn9y32m1717afzkvhmkwisrra"; depends=[igraph servr XML]; }; - rggobi = derive2 { name="rggobi"; version="2.1.22"; sha256="1g7k4xais9xkjlbvrkadr5d6c5rw4jp9c0gljhm71pa1fc9fcqff"; depends=[RGtk2]; }; rgho = derive2 { name="rgho"; version="2.0.0"; sha256="18vsd40wrzm8h8xv7mngyndw18wasb5b868ihczvzrqfnf5bq758"; depends=[curl dplyr httr jsonlite lazyeval magrittr memoise readr tibble tidyr]; }; rgl = derive2 { name="rgl"; version="0.100.54"; sha256="1mgs2d8igmcdzzymfwbqdrypmaidd4pra5n5gnhsn9pm6pqzidqp"; depends=[crosstalk htmltools htmlwidgets jsonlite knitr magrittr manipulateWidget shiny]; }; rglobi = derive2 { name="rglobi"; version="0.2.21"; sha256="12v6g1ja4rrw0vcrrzgd1llxfk64g9z4f0c90rkbd9cknvnn0id9"; depends=[curl RCurl readr rjson]; }; @@ -12841,7 +13323,7 @@ in with self; { rgr = derive2 { name="rgr"; version="1.1.15"; sha256="1mrnmbh2crhkwdi37q59hx76afvkhgzgaacg3688q7jp23d58z6x"; depends=[fastICA MASS]; }; rgrass7 = derive2 { name="rgrass7"; version="0.2-1"; sha256="0rhizda58hmglgr4aq6sr5y11y615w0pwpgdk3mylm9pjgj5i5vn"; depends=[XML]; }; rgsp = derive2 { name="rgsp"; version="0.2.0"; sha256="1fk0k479srfr0f4a5abyzcrzwy9hr1v5xf0jgs36fbim9bh7njlc"; depends=[dplyr magrittr tibble]; }; - rgw = derive2 { name="rgw"; version="0.1.0"; sha256="12f7bsfg24cld9y47jyqxswgc1bk4adbhhdpycapinbcfhyzc91p"; depends=[]; }; + rgw = derive2 { name="rgw"; version="0.3.0"; sha256="0hzkajmvqkmv6c238rdgyc6g16h96d5a0lnajnn5m87j0gwsl6wa"; depends=[]; }; rhandsontable = derive2 { name="rhandsontable"; version="0.3.7"; sha256="1y6dlpzid5apjx0gphkym7gq3lhwp0bxan8ca274pg170xyb33h8"; depends=[htmlwidgets jsonlite magrittr]; }; rhierbaps = derive2 { name="rhierbaps"; version="1.1.3"; sha256="0i4sr2wwzzl8vki5zihnd8v4ia2kji09cmf4ld07b6k099g5xprr"; depends=[ape ggplot2 matrixStats patchwork purrr]; }; rhli = derive2 { name="rhli"; version="0.0.2"; sha256="1mb6bizqkg7zd8nc5a81fw7d0y0vcv6zh6y28k9vikqmc5l1n21q"; depends=[]; }; @@ -12849,12 +13331,13 @@ in with self; { rhmmer = derive2 { name="rhmmer"; version="0.1.0"; sha256="0875b29i8rl9iypxp7vw514avq0ac4abdlfq3861cdd3kgycw8jh"; depends=[dplyr magrittr readr rlang tidyr]; }; rhnerm = derive2 { name="rhnerm"; version="1.1"; sha256="1fkh2pr4kzvqvagdyjlyab7p591s913104gyq05q170gmvlpmiww"; depends=[]; }; rhoR = derive2 { name="rhoR"; version="1.3.0.2"; sha256="1hzykkvzwv2mb759m9rw32dd1wgmksizqyr6grqf6a2z77k7w197"; depends=[Rcpp RcppArmadillo]; }; + rhosa = derive2 { name="rhosa"; version="0.1.0"; sha256="0aygdp7xp5hvr4i1s0isgbbr3pd164aj1px9bns6vdh0svq533qg"; depends=[]; }; rhosp = derive2 { name="rhosp"; version="1.10"; sha256="1k0rb4fchjlzinky6ysdvyk0xjsx5986aqwn3yc6s7m3v7y9wb9m"; depends=[]; }; rhub = derive2 { name="rhub"; version="1.1.1"; sha256="05b4phrny85fshismspjbaz1h0klg1fpy4b309si94pnqffxaqx6"; depends=[assertthat callr cli crayon desc digest httr jsonlite parsedate pillar prettyunits processx R6 rappdirs rcmdcheck rematch tibble uuid whoami withr]; }; - rhymer = derive2 { name="rhymer"; version="1.0.0"; sha256="1k15sd5q6a1ijayl585vc54d1zs4nyrxsfck9bn4nlfdiwc5arwf"; depends=[httr jsonlite]; }; + rhymer = derive2 { name="rhymer"; version="1.1.0"; sha256="00piml975chmmm3ipskzhfbbp5sq47yg5a78hsisssbzwwxsmbs0"; depends=[httr jsonlite]; }; ri = derive2 { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; }; ri2 = derive2 { name="ri2"; version="0.1.2"; sha256="0z6mbhrda7fh7a4y2kx3mf1zc1p0k4d76phw3187w50kwvkpb737"; depends=[estimatr generics ggplot2 pbapply randomizr]; }; - ribd = derive2 { name="ribd"; version="1.0.1"; sha256="0q1i2bs219iwqg2hlabbwmpcnsjfx1i0y31dy7pgirl5264w24xz"; depends=[glue kinship2 pedtools slam]; }; + ribd = derive2 { name="ribd"; version="1.2.0"; sha256="0pqy2a4zb9idmib9is5xk1qavannrij3f6765nrlprr13w4x3vm4"; depends=[glue kinship2 pedtools slam]; }; ribiosUtils = derive2 { name="ribiosUtils"; version="1.5-6"; sha256="1cfkzqbscj01pjqw7yjqf8gnvjacb13y8fc7nax4cb7gnk4fadc2"; depends=[]; }; ricegeneann = derive2 { name="ricegeneann"; version="1.0.2"; sha256="0wxqp4pfdhvq4mwzjrqi3m9jiayk5bp1ha222mpm4qz1pl41cy9w"; depends=[riceidconverter]; }; riceidconverter = derive2 { name="riceidconverter"; version="1.1.1"; sha256="143f76v3k2q9ddcxf2nzvd04pjgy7p120ln0zkmxpal20c81dwq6"; depends=[dplyr]; }; @@ -12866,7 +13349,7 @@ in with self; { riem = derive2 { name="riem"; version="0.1.1"; sha256="0lwhsxb4pm26kb65hs8pa63bsbrgy0zchqm4i6pq9f2r9h8vsm1m"; depends=[httr jsonlite lubridate tibble]; }; rif = derive2 { name="rif"; version="0.2.0"; sha256="0vk3dmg3qzw3i27wbpfih66rx8sdxq033l7h59h3hy960av4hawh"; depends=[crul data_table jsonlite tibble]; }; rifle = derive2 { name="rifle"; version="1.0"; sha256="1r0cfj3vzndgiarl9sb38zmpnpm4p8v9l5cm9c1m6g2q9kvpgpbs"; depends=[MASS]; }; - riingo = derive2 { name="riingo"; version="0.2.0"; sha256="1dbi86aic2p8c0dzf7m04chn9rj7y2v8qq8hivlvagq04y40yn6c"; depends=[crayon dplyr glue httr jsonlite purrr rlang tibble]; }; + riingo = derive2 { name="riingo"; version="0.3.0"; sha256="1aw8w9s5bfd22fjhi7mrzcshpb5vrbakjc1fvcaq3qw2ssj383fp"; depends=[crayon glue httr jsonlite purrr rlang tibble vctrs]; }; rijkspalette = derive2 { name="rijkspalette"; version="1.0.1"; sha256="0al5niymn6k6px6fh1pk3rvk3a3b2966bdfh0hprcjjl75a9mgvq"; depends=[crayon curl imager jsonlite]; }; ring = derive2 { name="ring"; version="1.0.0"; sha256="03sbgxwzms20gp0hkm5s0dihqkx3qf6bw0jrays7jjzrrwzl5657"; depends=[R6]; }; rintrojs = derive2 { name="rintrojs"; version="0.2.2"; sha256="0vyqb3pyrh12saddar71ac9csn2vkd2j8ln6ygpqys8ky1lc3427"; depends=[jsonlite shiny]; }; @@ -12874,17 +13357,18 @@ in with self; { rioja = derive2 { name="rioja"; version="0.9-21"; sha256="01vc7zfw13zdri0rx93adx86gprzcmw9d454848ach95hdkwipk5"; depends=[mgcv vegan]; }; ripe = derive2 { name="ripe"; version="0.1.0"; sha256="0dmf8i8l9ja590fakpgi6lf128wd7cd49g4ihm02cbsn8h5ha27s"; depends=[magrittr]; }; rise = derive2 { name="rise"; version="1.0.4"; sha256="12r7mbaxp9pjypbpjxlsbqg7spw80gjgm2w0lsvgvclffc50a6ni"; depends=[dplyr ggplot2]; }; + riskCommunicator = derive2 { name="riskCommunicator"; version="0.1.0"; sha256="1f8nfha6sgn52f3qvb2bkawv6c8ivrm5n6sy1ggx9337xjl35baz"; depends=[boot dplyr ggplot2 gridExtra magrittr purrr rlang tidyr tidyselect tidyverse]; }; riskParityPortfolio = derive2 { name="riskParityPortfolio"; version="0.2.1"; sha256="0l51spflm7wwwz5yrkw1i5534d1840wyyh2w3mz8apaxac76l0xz"; depends=[alabama Matrix nloptr quadprog Rcpp RcppEigen]; }; riskPredictClustData = derive2 { name="riskPredictClustData"; version="0.2.6"; sha256="0mvy9299pg374gvvqs9lmj2j0f3bzyy279kjpz7jq35hkgz5wif3"; depends=[gee Hmisc MASS mvtnorm]; }; riskR = derive2 { name="riskR"; version="1.1"; sha256="1qadfyb07idfw0bs006kb3917rzda83di6jmsr22941gv78z1wyv"; depends=[]; }; riskRegression = derive2 { name="riskRegression"; version="2020.02.05"; sha256="1m02aap91hn1gaaadc9qk3ij33l613b03biw52l79dp32yfwzdmm"; depends=[cmprsk data_table doParallel foreach ggplot2 lattice lava plotrix prodlim Publish ranger Rcpp RcppArmadillo rms survival timereg]; }; riskSimul = derive2 { name="riskSimul"; version="0.1"; sha256="0s2a1mn6g11m96gqscb916caj2aykcs3rkacpqcdnlyzryk1gsnb"; depends=[Runuran]; }; - riskclustr = derive2 { name="riskclustr"; version="0.2"; sha256="0j5gcm9a57yrg5ppqmacdjr16b9d8rwqkhq1mawy1fjpf18d2max"; depends=[aod gtools Matrix mlogit stringr]; }; + riskclustr = derive2 { name="riskclustr"; version="0.3"; sha256="13fl00g0hzcl4vqvl8zl4m5bpp14948yvd4i4dbdrg1h8ym30ir5"; depends=[aod Matrix mlogit stringr]; }; risksetROC = derive2 { name="risksetROC"; version="1.0.4"; sha256="1fh0jf8v536qzf1v3awx3f73wykzicli4r54yg1z926ccqb4h80l"; depends=[MASS survival]; }; riskyr = derive2 { name="riskyr"; version="0.2.0"; sha256="0zq5qybqisbh9k7i57s8yw9xcm7yckcjk17h4ybcx4p8788gg5m3"; depends=[]; }; ritis = derive2 { name="ritis"; version="0.9.0"; sha256="0v0g7zbdx21ia98lb126cq2d1fwx24prng2p2r8lcgpxc34fdfsa"; depends=[crul data_table jsonlite solrium tibble]; }; riv = derive2 { name="riv"; version="2.0-5"; sha256="0n19jlrs12iysq45xyi3zvghkircg0ww5vbsfpnqkw5b22zsv30s"; depends=[MASS quantreg rrcov]; }; - riverdist = derive2 { name="riverdist"; version="0.15.0"; sha256="145mvqnhv12dcvss54wdycgb3wwk95phl4kx5z0jnh3kmm1zsdl4"; depends=[rgdal sp]; }; + riverdist = derive2 { name="riverdist"; version="0.15.3"; sha256="029dkki4j285ik1fif0hd9gzq332xv7p88wbjbh52464waajh8pl"; depends=[rgdal sp]; }; rivernet = derive2 { name="rivernet"; version="1.2.1"; sha256="0p8jyigbxipwds9pdw2gzv3ql5yikg1ik4vbk4drylbp5xhmvyja"; depends=[]; }; riverplot = derive2 { name="riverplot"; version="0.6"; sha256="0q1icpny8nkxyjhawyjzwrw8qlz0ayn2xyrsqrm4vkxyv6c9xk8z"; depends=[]; }; rivervis = derive2 { name="rivervis"; version="0.46.0"; sha256="19jsl5g46jcbc0kg47bsif1wrw9z9brgvwdcxqjc89shnx3hzzfv"; depends=[]; }; @@ -12892,8 +13376,9 @@ in with self; { rjade = derive2 { name="rjade"; version="0.1"; sha256="0f1jljj6m1almz0na984n0g314y0rl6a0mx04rbrpipgfgz1h37c"; depends=[V8]; }; rjags = derive2 { name="rjags"; version="4-10"; sha256="1nhaim84ww8fd6m8xlpmngqcnp2qpql29ahc38366fxja3ghngmx"; depends=[coda]; }; rjazz = derive2 { name="rjazz"; version="0.1.7"; sha256="0wmqlpgcr98dvapfmdcph5mdv202rzzsvb06iy5sqvpizpg7pbsz"; depends=[RCurl]; }; - rjdqa = derive2 { name="rjdqa"; version="0.1.0"; sha256="07qvvy3i0ak7p717wf68gx8d1m9l4lhibf0ynmc0jny58i56fiw8"; depends=[plotrix RJDemetra]; }; - rje = derive2 { name="rje"; version="1.10.15"; sha256="0z6df1sc33nz7rhgrr13q03ymraz5wfjbwqqdq6pmyff8mxkzqvj"; depends=[knitr]; }; + rjdmarkdown = derive2 { name="rjdmarkdown"; version="0.1.0"; sha256="1zfb4w0z3wpv8c13rwkf6fzn4l1p6jkxvawkikv80xa8w3nab7iy"; depends=[kableExtra knitr magrittr RJDemetra]; }; + rjdqa = derive2 { name="rjdqa"; version="0.1.1"; sha256="0d7jv3a2a7p7h6jnr5znln06x6m4mksb6cy44xdxir1pwcd1z6br"; depends=[plotrix RJDemetra XLConnect]; }; + rje = derive2 { name="rje"; version="1.10.16"; sha256="1a9lxikc5n4sb5fzlw8w8ys65npvlvqfail3mq5zi46smd1s9qp8"; depends=[knitr]; }; rjmcmc = derive2 { name="rjmcmc"; version="0.4.5"; sha256="14rzvp6z5avlcnmlmvb6w4gvlh6v4ncbcai3v4c4svnjv555vz45"; depends=[coda madness mvtnorm]; }; rjson = derive2 { name="rjson"; version="0.2.20"; sha256="0v1zvdd3svnavklh7y5xbwrrkbvx6053r4c5hgnk7hz7bqg7qa1s"; depends=[]; }; rjsonapi = derive2 { name="rjsonapi"; version="0.1.0"; sha256="0qshll0y8b6lbfrqmp69w9kc9hgfrz94dk68nddshk9ilg14lx4d"; depends=[crul jsonlite plumber R6]; }; @@ -12901,12 +13386,12 @@ in with self; { rjwsacruncher = derive2 { name="rjwsacruncher"; version="0.1.0"; sha256="0pbf3yl7cnx8vv07x9nwgrglv5h8r135fc840pxvapi099nr7ijl"; depends=[XML]; }; rkafka = derive2 { name="rkafka"; version="1.1"; sha256="0c0hszsmmd876jcfamjcfb7bxw7869zgy99j4i6ksb8za232nmmw"; depends=[rJava rkafkajars RUnit]; }; rkafkajars = derive2 { name="rkafkajars"; version="1.1"; sha256="121qnzxhipgv145lhmr6h356jpdd6knsx7f21cv9a8r5r009d42z"; depends=[rJava RUnit]; }; - rkeops = derive2 { name="rkeops"; version="1.4"; sha256="1wwca6ym32a7l0w85sgysyvyjqy43hly76gm28s4bklx58ap7l1y"; depends=[openssl Rcpp RcppEigen stringr]; }; + rkeops = derive2 { name="rkeops"; version="1.4.1"; sha256="1ihkrm3l3pvjp4k9zqrrgb5szma6hvw55rlnj0vpyff6ir18mzr4"; depends=[openssl Rcpp RcppEigen stringr]; }; rknn = derive2 { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; }; rkt = derive2 { name="rkt"; version="1.5"; sha256="1rgf7dnk4d1b46rns2mb2s1ilxq7hqrh057vrrl00324r4h8bs1k"; depends=[]; }; rkvo = derive2 { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp]; }; - rlang = derive2 { name="rlang"; version="0.4.5"; sha256="1a0h3dr519p3jj6aygbhwi9f2zwlan6d07f1gkh2db56y5vaq7yd"; depends=[]; }; - rlas = derive2 { name="rlas"; version="1.3.5"; sha256="01ncx3rckr7fwl6fqlj1rn0k6563kp4dfn3yhxqzd49rwhvclkcf"; depends=[BH data_table Rcpp]; }; + rlang = derive2 { name="rlang"; version="0.4.7"; sha256="0f4rhnhyhgrv874l0yzm80ij6vcqdykfd7bzmnqs0wbgyhkxk8vq"; depends=[]; }; + rlas = derive2 { name="rlas"; version="1.3.6"; sha256="141pq0bw27iplsyai90xnikba6anv14nx46grk0jp380cv5m6xd2"; depends=[BH data_table Rcpp]; }; rlc = derive2 { name="rlc"; version="0.2.0"; sha256="083pkajxshckk3hqg7q87jdmiqg9a1jp5lwar6f5r4nqna4kf3xa"; depends=[hwriter jrc jsonlite plyr R6 stringr]; }; rld = derive2 { name="rld"; version="1.0"; sha256="1glv4q25z14hcwifwg623h77p4awpsn3nk843pnph4sb3p5qbmn3"; depends=[emdbook MASS survival]; }; rleafmap = derive2 { name="rleafmap"; version="0.2"; sha256="1i2qczipg7lr6fl35lcl896r54jia7libxx83darrfzc1hd9sdcq"; depends=[knitr raster sp]; }; @@ -12914,7 +13399,6 @@ in with self; { rless = derive2 { name="rless"; version="0.1.1"; sha256="0ham8kf2hbswrcnc5i5b3svywdwq3kwp9n66n4k9sllahl4x9jdn"; depends=[V8]; }; rlfsm = derive2 { name="rlfsm"; version="1.0.0"; sha256="06dar7hfxpah3dm8zlfq5g0n2gwr9wjch1dy08f8dj22600spbya"; depends=[doParallel foreach ggplot2 plyr Rdpack reshape2 stabledist]; }; rlist = derive2 { name="rlist"; version="0.4.6.1"; sha256="08awy2p7rykc272wvvya4ddszbr7b7s7qv4wr3hs8ylr4jqlh0dv"; depends=[data_table jsonlite XML yaml]; }; - rlm = derive2 { name="rlm"; version="1.2"; sha256="18y735z05k9pms6iv1739qg3q12w099qhs42icxhqs5gcdhz92fm"; depends=[]; }; rlmDataDriven = derive2 { name="rlmDataDriven"; version="0.4.0"; sha256="1fhh2siafpqmvpxi2piccxvvn5n38s5d6as6iyn43rgpsslswc8g"; depends=[MASS tseries]; }; rlme = derive2 { name="rlme"; version="0.5"; sha256="0p26mw4g12l279lh80vqcjs3pvjr759ap2m622490k1i2ralxzif"; depends=[magic MASS mgcv nlme quantreg Rcpp robustbase stringr]; }; rly = derive2 { name="rly"; version="1.6.2"; sha256="1bb55g3rip524dccaxvahjxsi2cimxqvzc897pxplv3bb10pm0r2"; depends=[futile_logger R6]; }; @@ -12925,17 +13409,18 @@ in with self; { rmangal = derive2 { name="rmangal"; version="2.0.0"; sha256="0vn5i6hwi64kzi481m3y696cqdxz6frv1n7xxm72a3vbz1jsqcrf"; depends=[httr igraph jsonlite memoise purrr]; }; rmapshaper = derive2 { name="rmapshaper"; version="0.4.4"; sha256="11diajgz8jkfa2d725n0iy0psiw3x4d7kbdvdrd1prwdjsyh7i5d"; depends=[geojsonio geojsonlint jsonlite readr sf sp V8]; }; rmapzen = derive2 { name="rmapzen"; version="0.4.2"; sha256="1vybg3lmrqghvd23jwpfmypvqz2b65bc0m2pwbpizwkkg35iza70"; depends=[assertthat digest dplyr geojsonio httr jsonlite maps maptools purrr rgdal sf sp tibble tidyr]; }; - rmargint = derive2 { name="rmargint"; version="1.0.2"; sha256="1hl2nxmgknw74jvmc05wz6zkf7i151xl7h7hdpcivvm60yizlx8i"; depends=[]; }; - rmarkdown = derive2 { name="rmarkdown"; version="2.1"; sha256="0pa5xs0vzwn9vsgysjqbks9v5lbqphxh5agciskllibc40hhwigg"; depends=[base64enc evaluate htmltools jsonlite knitr mime stringr tinytex xfun yaml]; }; + rmargint = derive2 { name="rmargint"; version="2.0.2"; sha256="0irq5114dd8pngl6k13r2rrsivijiqfldm6mby0q5a9wrj2vmwc9"; depends=[]; }; + rmarkdown = derive2 { name="rmarkdown"; version="2.3"; sha256="0vdjq4kcyxkr2m27588kk6yi5g53symjshj4jz4n0j18wz53shji"; depends=[base64enc evaluate htmltools jsonlite knitr mime stringr tinytex xfun yaml]; }; rmatio = derive2 { name="rmatio"; version="0.14.0"; sha256="072fxg81r4rsc71qrf5p6lr5s3gchbgvxhyzwlx3wxw7y2px6w7y"; depends=[Matrix]; }; rmcfs = derive2 { name="rmcfs"; version="1.3.1"; sha256="1y59r4n2ywinfpkb7zn7gygl97w6p0rvr90sjqy4vdhi60ka16kf"; depends=[data_table dplyr ggplot2 gridExtra igraph reshape2 rJava stringi yaml]; }; - rmcorr = derive2 { name="rmcorr"; version="0.3.0"; sha256="1p05ln653yrd02wmn8wfzawiw6a924d8an0568fcbgl1pdna43b1"; depends=[psych RColorBrewer]; }; + rmcorr = derive2 { name="rmcorr"; version="0.4.0"; sha256="1iv3wr92w162mkxc1bxix36s542h63krbimx5lpcsl4jflralqhr"; depends=[psych RColorBrewer]; }; rmd = derive2 { name="rmd"; version="0.1.5"; sha256="00fsssd4hnk00wsrials4lwxrjnr84ppnk7094bfswpfc0iawc3z"; depends=[blogdown bookdown bookdownplus citr cli crayon curl devtools dplyr DT magrittr mindr miniUI pagedown purrr rappdirs rmarkdown rstudioapi rticles rvest shiny shinyjs tibble tinytex xaringan xml2]; }; rmdHelpers = derive2 { name="rmdHelpers"; version="1.2"; sha256="1ahzbs8z7wvh1dwbq1kq8wrjrknxi2gck63k70gj0swjvgk0ih5r"; depends=[dplyr knitr]; }; rmda = derive2 { name="rmda"; version="1.6"; sha256="1m7j79jwii9la47w34ka3yl1n7nql8pfn32if0aycn4yw5sy8dmc"; depends=[caret MASS pander reshape]; }; - rmdcev = derive2 { name="rmdcev"; version="1.1.1"; sha256="0pz60hzd3gvmrzcb29h0h4zb4lr5sdyw3nsa84hixsph00cf4lm0"; depends=[BH dplyr Formula purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders stringr tibble tidyr tidyselect tmvtnorm]; }; + rmdcev = derive2 { name="rmdcev"; version="1.2.0"; sha256="09ikc8nw60a8gcq45vhqzqf4wbqp0w65qalgkn212k70y0hvq3w6"; depends=[BH dplyr Formula purrr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr tibble tidyr tidyselect]; }; rmdfiltr = derive2 { name="rmdfiltr"; version="0.1.2"; sha256="1hj4lhwyz47hznyqjgghp852fkzhk5k7dfp7cxabg8h49qzswcgx"; depends=[assertthat rmarkdown]; }; rmdformats = derive2 { name="rmdformats"; version="0.3.7"; sha256="1pwd4z175dmz4fpg094rba48gq6sir8ys7ln7pfdsnwmgf79sj9k"; depends=[bookdown htmltools knitr rmarkdown]; }; + rmdpartials = derive2 { name="rmdpartials"; version="0.5.8"; sha256="15dw0pk1hdif839k60swna4li04inf7fzsiq9bxbw2wk5pdkqirn"; depends=[digest knitr rlang]; }; rmdplugr = derive2 { name="rmdplugr"; version="0.4.1"; sha256="16wmrya8wdipqcrh34k4v4iq05aqd0jwf7rg6w1wsvx2i9211xg6"; depends=[bookdown rmarkdown]; }; rmdshower = derive2 { name="rmdshower"; version="2.1.1"; sha256="1sjpi5ils31adii51gaa8ly7x93l9ganp6in8rsln6si4jc2ppg9"; depends=[rmarkdown]; }; rmeta = derive2 { name="rmeta"; version="3.0"; sha256="0vkbnxp579v8zmcv1isdbzj5swpr6fq17zwparxcvzswjc2x9ydr"; depends=[]; }; @@ -12944,21 +13429,23 @@ in with self; { rmgarch = derive2 { name="rmgarch"; version="1.3-7"; sha256="108wrbqj4c02c9cyv5m5xlswb1mlfdrhggb005sixr2dcqghb163"; depends=[Bessel corpcor ff MASS Matrix pcaPP Rcpp RcppArmadillo Rsolnp rugarch shape spd xts zoo]; }; rmi = derive2 { name="rmi"; version="0.1.1"; sha256="1y0395l9lhskdrk3x9ps2dmv0sznsba0n6a9fmma33dc9dhywgf9"; depends=[BH Rcpp RcppArmadillo]; }; rminer = derive2 { name="rminer"; version="1.4.5"; sha256="0xwlayzmn4z6g9l93mj0vjsh31mhpxcmccvjm0dr802cjiv3phjj"; depends=[adabag Cubist e1071 glmnet kernlab kknn lattice MASS mda nnet party plotrix pls randomForest rpart xgboost]; }; - rmio = derive2 { name="rmio"; version="0.1.3"; sha256="0zd8kki9wmh4xnabf7nwjw66wb4x5wngn0073pzqcj84ggxgnwqc"; depends=[]; }; + rmio = derive2 { name="rmio"; version="0.2.0"; sha256="0g1sb5av8mw1b4absd5ydxrh93cp5k5x31kl6ghamx8i8irr1ngk"; depends=[]; }; rmonad = derive2 { name="rmonad"; version="0.7.0"; sha256="1vjx8kk57xk7c2a05c6kn75n17842ya7j41hqj3wmgq8yvaxrngx"; depends=[digest glue igraph magrittr pryr]; }; rmpw = derive2 { name="rmpw"; version="0.0.4"; sha256="1a49rvdwvmccv4gfir48fw0b9jyrpc2q9zfyk5j9b7nxsx6x7abl"; depends=[gtools MASS]; }; - rms = derive2 { name="rms"; version="5.1-4"; sha256="19knh1sw0icw6jh9wfb2hq5jf49i2qfvp9myvqm5paa495689x9q"; depends=[ggplot2 Hmisc htmlTable htmltools lattice multcomp nlme polspline quantreg rpart SparseM survival]; }; + rms = derive2 { name="rms"; version="6.0-1"; sha256="1zkcsqcvldfj4kyn0346vi51igq951qrnpxlv2pfvap6n2v5wbxq"; depends=[cluster digest ggplot2 Hmisc htmlTable htmltools lattice MASS multcomp nlme polspline quantreg rpart SparseM survival]; }; rms_gof = derive2 { name="rms.gof"; version="1.0"; sha256="1n0h3nrp11f2x70mfjxpk2f3g4vwjaf4476pjjwy49smxxlxwz82"; depends=[]; }; + rmsb = derive2 { name="rmsb"; version="0.0.1"; sha256="16bgr9w92y7fjp418g2mvfgh0hn444in4q7pd94k5s1kmv6232h5"; depends=[BH cluster digest ggplot2 Hmisc knitr loo MASS Rcpp RcppEigen RcppParallel rms rstan rstantools StanHeaders survival]; }; rmsfact = derive2 { name="rmsfact"; version="0.0.3"; sha256="05s23rfs9prr2ia3h4h9y614xhv91lbgppgf3mrrssxkwz220kd5"; depends=[]; }; + rmsfuns = derive2 { name="rmsfuns"; version="1.0.0.1"; sha256="18bpj7xh3kc7pl6ivi3cripam26bsaf9r9099cjf22qndvy18hb6"; depends=[dplyr magrittr PerformanceAnalytics purrr readr tbl2xts xts zoo]; }; rmumps = derive2 { name="rmumps"; version="5.2.1-12"; sha256="142f8kf6qydh7qrdhs12836zri137f0b3vaq8kqmcvya07pviyr9"; depends=[Rcpp]; }; - rmutil = derive2 { name="rmutil"; version="1.1.3"; sha256="1nl20nyahnm55z41d096ni9iqhn19ab98i9c13ja1i6ik4gg9fks"; depends=[]; }; - rmweather = derive2 { name="rmweather"; version="0.1.3"; sha256="1qdf511vmpffrdfcxlll54km2s0pf6pdswj8401k4ymv5iif91hl"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble viridis]; }; + rmutil = derive2 { name="rmutil"; version="1.1.5"; sha256="1xmjmzws4wb0ksg4z4srzyk6mk2l1cr2ina9rznsdsyssr1ycxv0"; depends=[]; }; + rmweather = derive2 { name="rmweather"; version="0.1.51"; sha256="0qd49lr12hc39dwg348b021aqxw57pfcb9xxhp51fvnw6gw6bgqd"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble viridis]; }; rmytarget = derive2 { name="rmytarget"; version="2.1.8"; sha256="1sn1pncxnv2jgxhmbm4zlq6zyi8nsz90x8b7697qlqf2la837v96"; depends=[dplyr httr lubridate purrr stringr]; }; rnaseqWrapper = derive2 { name="rnaseqWrapper"; version="1.0-1"; sha256="1fa3hmwrpccf09dlpginl31lcxpj5ypxspa0mlraynlfl5jrivch"; depends=[ecodist gplots gtools]; }; rnassqs = derive2 { name="rnassqs"; version="0.5.0"; sha256="1mbkv32zidax9i6km93bbi3m7xpnsy805cz4ikdrid84qg94an09"; depends=[httr jsonlite]; }; rnaturalearth = derive2 { name="rnaturalearth"; version="0.1.0"; sha256="193b31a7n9jhc607mhwxbpx5gr0fpj3qasm9dbi6kcc7vac3ilgm"; depends=[sf sp]; }; rnaturalearthdata = derive2 { name="rnaturalearthdata"; version="0.1.0"; sha256="1z32j5lz2lb8xgpkr73majw22k0b49iazj6jjc7j4w9k4zxxa102"; depends=[sp]; }; - rnbp = derive2 { name="rnbp"; version="0.1.0"; sha256="01hx9r7ai42kcj8l7bmqrma8w3l1f9bmg2ingpqxirimxkfwv2k8"; depends=[curl httr jsonlite]; }; + rnbp = derive2 { name="rnbp"; version="0.2.0"; sha256="135ab667k1k5jidik42yw0j4xr5ggqm9ikq42nhqllxqnkvvq0y5"; depends=[curl httr jsonlite]; }; rncl = derive2 { name="rncl"; version="0.8.4"; sha256="0ss9jqrvv7bhvl5j74cjrp8r866d9dlavrbbfscwz3mhkgfx06bb"; depends=[progress Rcpp]; }; rneos = derive2 { name="rneos"; version="0.4-0"; sha256="07b3vb0h36ilwb8iylgppl8wpi84f583frmscpj236s1aihqwrmx"; depends=[RCurl XML]; }; rnetcarto = derive2 { name="rnetcarto"; version="0.2.4"; sha256="0fk5rym6zp049bl1f7bkl2231mjh3pgnxn0nhvmzpsah08rh4rr6"; depends=[]; }; @@ -12966,27 +13453,28 @@ in with self; { rngWELL = derive2 { name="rngWELL"; version="0.10-6"; sha256="0pjjcs9pqj7mf0mhb2cwd0aanqpwnm65bm86hk6mi2vw8rgnj2vv"; depends=[]; }; rngtools = derive2 { name="rngtools"; version="1.5"; sha256="0xgmg3qb6insc157as47mcm9sdjdpy9jirh7w06bxb7pfcxqfx42"; depends=[digest]; }; rngwell19937 = derive2 { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; }; - rnn = derive2 { name="rnn"; version="0.9.8"; sha256="1f1h7x9vff0jrdkv1gpxlmlr5v1c81gsfxy4z83rq3v0drpxahnv"; depends=[shiny sigmoid]; }; - rnoaa = derive2 { name="rnoaa"; version="0.9.6"; sha256="073w2jadpih9amamwm3arw1d168p69dfhz98gvvmqay3k7dmwg0z"; depends=[crul dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate rappdirs scales tibble tidyr tidyselect XML xml2]; }; + rnn = derive2 { name="rnn"; version="1.4.0"; sha256="0k960jylbvg8r453430d8dpdzydkk3yr5np8rxkay79533ikrcgy"; depends=[shiny sigmoid]; }; + rnoaa = derive2 { name="rnoaa"; version="1.1.0"; sha256="09cixjs25pkr4glww54yjdnkvpcm01v48fn4f6cy78sykk4cibnp"; depends=[crul data_table dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate rappdirs scales tibble tidyr tidyselect XML xml2]; }; rnpn = derive2 { name="rnpn"; version="0.1.0"; sha256="10xx8fxgdknv71ks42xxvf38xsmjy6s87y67wi21673v0n07fxb5"; depends=[data_table httr jsonlite plyr]; }; rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; - rnrfa = derive2 { name="rnrfa"; version="2.0.2"; sha256="0sjg04y1s7wfvimwv19ay5qhldsvncy34j0r79ddys7pmzql1aic"; depends=[curl dplyr ggmap ggplot2 httr jsonlite lubridate rgdal sp tibble zoo]; }; + rnrfa = derive2 { name="rnrfa"; version="2.0.3"; sha256="0c7yrnj65dvfa1rc062y9w25k4nqfa0j8mnid7dz7fzf567x56k3"; depends=[curl dplyr ggmap ggplot2 httr jsonlite lubridate rgdal sp tibble zoo]; }; roadoi = derive2 { name="roadoi"; version="0.6"; sha256="1mlf63018qpgyqma51fas1nvags7qcrsw11hm6c1idnxjh0sz82z"; depends=[dplyr httr jsonlite miniUI plyr purrr shiny tibble tidyr]; }; robCompositions = derive2 { name="robCompositions"; version="2.2.1"; sha256="18p0rb04fzmwqsxcap5mxhhmhav6qs05icdaq3msmbp0n9iwrpz6"; depends=[car cluster cvTools data_table e1071 fpc GGally ggplot2 kernlab MASS mclust pls Rcpp RcppEigen reshape2 robustbase rrcov sROC tidyr VIM zCompositions]; }; robFitConGraph = derive2 { name="robFitConGraph"; version="0.1.0"; sha256="092nc0xnjs2zxd9ij0dl1xggb8mwl8nly284yjhhygmwlwsvhzxm"; depends=[MASS mvtnorm Rcpp]; }; robcbi = derive2 { name="robcbi"; version="1.1-3"; sha256="0rj732qdd0wd9d9pxldnsw5rif5d7wz327iydvxcf5x8lgvk42jd"; depends=[robeth]; }; robcor = derive2 { name="robcor"; version="0.1-6"; sha256="1hw8simv93jq8a5y79hblhqz157wr8q9dzgm0xhvvv5nkzyqkpzf"; depends=[]; }; robcp = derive2 { name="robcp"; version="0.2.5"; sha256="023g9w26bxia873qblscdcf50r7qv5hknwdx45dqbr3r778ls8bn"; depends=[]; }; + roben = derive2 { name="roben"; version="0.1.0"; sha256="18k0h1y2xhvdssg28b9s4whn3kcbdgkz55dp1y3rrczw8xrm54mm"; depends=[glmnet Rcpp RcppArmadillo]; }; robeth = derive2 { name="robeth"; version="2.7-6"; sha256="1x0hzgq7jwl83wwmy581ia8009v0j95aksnr5ywpflnqm76rj6v2"; depends=[]; }; robets = derive2 { name="robets"; version="1.4"; sha256="0lvzfpv6569pjysblhadd05sglx0qvyr9wipb9cpiya4a1992n61"; depends=[forecast Rcpp]; }; robfilter = derive2 { name="robfilter"; version="4.1.2"; sha256="0mvpaf6g694b7175bl3yr6lxbwla4pwp7g4y34qb4klgl5n3nw03"; depends=[lattice MASS robustbase]; }; - robin = derive2 { name="robin"; version="1.0.0"; sha256="0g0dzk20z98ygbxs3f8ylfjryxpdz5112jvdiax4iyj890yjp93c"; depends=[DescTools fdatest ggplot2 gprege igraph networkD3]; }; - robis = derive2 { name="robis"; version="2.1.8"; sha256="1qi6ay0v3vc2gz5xalgj8vfx7zaiz5726mkkgwawxfj35gmdq0mk"; depends=[dplyr ggplot2 httr jsonlite leaflet]; }; - robmed = derive2 { name="robmed"; version="0.6.0"; sha256="1rlfn85nq6dpwwlp3z567vq23i233iwsjb0jss4ahfbnayydq2ir"; depends=[boot ggplot2 quantreg robustbase shiny]; }; - robmixglm = derive2 { name="robmixglm"; version="1.0-4"; sha256="03h79s63wy5mik3ijqqikxczhklrhd50ih9800hpy5h2yy59rlhn"; depends=[actuar bbmle boot fastGHQuad MASS numDeriv Rcpp VGAM]; }; - robotstxt = derive2 { name="robotstxt"; version="0.6.2"; sha256="1c1rhiwkdzvbspwa5km6gp3sjhzmb60ljibb2pf26s931lkr5b6l"; depends=[future future_apply httr magrittr spiderbar stringr]; }; + robin = derive2 { name="robin"; version="1.0.1"; sha256="0zbhv9vs5ccsz6xz0i8hps8431va1kk8jqpr66yiz8nb404z1813"; depends=[DescTools fdatest ggplot2 gprege igraph networkD3]; }; + robis = derive2 { name="robis"; version="2.3.9"; sha256="1pz8904zhif1d02q6ar7winf313j3bjzxlaqsnbczxjjchs6j2g3"; depends=[dplyr ggplot2 httpcache httr jsonlite leaflet mapedit rlang sf tibble tidyr]; }; + robmed = derive2 { name="robmed"; version="0.7.0"; sha256="0j868y52fx1c85pw5bng278ybbh3b7h2bvmdrlj9irwgdvqphv9x"; depends=[boot ggplot2 quantreg robustbase shiny sn]; }; + robmixglm = derive2 { name="robmixglm"; version="1.1-1"; sha256="0ri1jfq9017585447imvfqn4g9sgyya5p72ainzzx9i7k0hib3dw"; depends=[actuar bbmle boot doParallel doRNG fastGHQuad foreach MASS numDeriv Rcpp VGAM]; }; + robotstxt = derive2 { name="robotstxt"; version="0.7.8"; sha256="176jrgg1jiz6jrpvw3lafnm4b2dcf7gl8j0hvk7yn5xbsfzc9iac"; depends=[future future_apply httr magrittr spiderbar stringr]; }; robreg3S = derive2 { name="robreg3S"; version="0.3"; sha256="0rv8qh98wws1f40d1kmysyy9qin0ngsvwq63cnxbwi290wsnrvls"; depends=[GSE MASS robustbase]; }; - robregcc = derive2 { name="robregcc"; version="1.0"; sha256="159ms69jqjkf8bhi4hkm929hpwqi8qbcfyaahcjlkyximv7qnqaz"; depends=[magrittr MASS Rcpp RcppArmadillo]; }; + robregcc = derive2 { name="robregcc"; version="1.1"; sha256="06fapmc3jfrfdqvz02jr12dk1d5iw6s3mcb13jz1nm2bybw6r04a"; depends=[magrittr MASS Rcpp RcppArmadillo]; }; robsurvey = derive2 { name="robsurvey"; version="0.1.1"; sha256="0rf2sd7maz565hlgpyhvkswqyck01hif4mg5isbnnky9n3nc98pi"; depends=[survey]; }; robumeta = derive2 { name="robumeta"; version="2.0"; sha256="1ynlfxlzh442jd1cf02j0f948m16d536a30gb4bf7208baqri1vg"; depends=[]; }; robust = derive2 { name="robust"; version="0.5-0.0"; sha256="1ks5scp8bnicl9j1r8yrmz668fjs6ifdmi540zw6d2ck500bbw42"; depends=[fit_models lattice MASS robustbase rrcov]; }; @@ -12994,6 +13482,7 @@ in with self; { robustDA = derive2 { name="robustDA"; version="1.1"; sha256="1yys6adkyms5r4sw887y78gnh97qqr7sbi5lxv5l9bnc4ggcfiz6"; depends=[MASS mclust Rsolnp]; }; robustETM = derive2 { name="robustETM"; version="1.0"; sha256="1dlj79v08bls500lb81rya6vwx58h97rpq1sy9zwd3mfl9b6awp9"; depends=[]; }; robustHD = derive2 { name="robustHD"; version="0.6.1"; sha256="0h2kdw8xkyflczwfq48cfdal0ccvil8dsq4xpnw7qfmjyvkycnxp"; depends=[ggplot2 MASS perry Rcpp RcppArmadillo robustbase]; }; + robustMVMR = derive2 { name="robustMVMR"; version="0.1.0"; sha256="10cidj5q707xy2x2g0vynbdhz84k6amc3svk3x7rgx4jcv55yr6a"; depends=[ggplot2 lmtest robustbase]; }; robustSingleCell = derive2 { name="robustSingleCell"; version="0.1.1"; sha256="1rxjw5rwp20ssjgq26ajrbipqfjblmsgf87jgx7xa41mgmhwaq51"; depends=[biomaRt cccd dplyr GGally ggplot2 ggpubr ggrepel gplots igraph limma Matrix RANN RColorBrewer Rcpp reshape2 rslurm Rtsne scales]; }; robustX = derive2 { name="robustX"; version="1.2-4"; sha256="02476pl6gnv1sgp5qywlm79gkaxlghms2c1arj4b16r0gz0g230r"; depends=[robustbase]; }; robustarima = derive2 { name="robustarima"; version="0.2.5"; sha256="0mqlp4xmma74rgwb6rihbzs5nillcnddl6smlxmm8lq1wba27jdj"; depends=[splusTimeDate splusTimeSeries]; }; @@ -13001,13 +13490,13 @@ in with self; { robustfa = derive2 { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf5sbhx490i46gnhs7yibf4wscrsj1bh2mqy"; depends=[rrcov]; }; robustgam = derive2 { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; }; robustlmm = derive2 { name="robustlmm"; version="2.3"; sha256="1rfiz29wy20srwd24ja42fh51ng9vyqrkjbb2dzvsqf663hsf1q0"; depends=[cubature fastGHQuad ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen robustbase xtable]; }; - robustloggamma = derive2 { name="robustloggamma"; version="1.0-2.1"; sha256="1lj0479jgpfdn0886ap9j0vcajr1h30g30yy8vn844z9sbq45d47"; depends=[numDeriv RobustAFT robustbase survival]; }; - robustrank = derive2 { name="robustrank"; version="2019.3-7"; sha256="1wqfr6l7vzx8yjvj8f03djdr5srdql0gl041mgnbrc3r4n7ajg7x"; depends=[kyotil]; }; + robustrank = derive2 { name="robustrank"; version="2019.9-10"; sha256="1xikknrmnh95wpvyljdl7v510ddi1g7a88aw3l630s789nq5i02h"; depends=[kyotil]; }; robustrao = derive2 { name="robustrao"; version="1.0-5"; sha256="1r8v9qjx70s8swh09imq9kzdxg0qhnmk00zrg939mig9b12mw1p6"; depends=[doParallel foreach gmp igraph iterpc quadprog]; }; robustreg = derive2 { name="robustreg"; version="0.1-11"; sha256="08c6dyzki68hzl006s12bkjiirlw2n2isirjh8b79sd6zjrjlh72"; depends=[Matrix Rcpp RcppArmadillo]; }; robustsae = derive2 { name="robustsae"; version="0.1.0"; sha256="0fi1fpqnfj6vkmidlr90kqbn1bxxxqb5qpqqrz9rrimlsvrc4ddl"; depends=[coda lattice MCMCpack mvtnorm pscl]; }; robvis = derive2 { name="robvis"; version="0.3.0"; sha256="0xzvx3230ydd082jmdlm70vyhjizknngfzhvcbqpdcm403klni5h"; depends=[ggplot2 scales tidyr]; }; rocNIT = derive2 { name="rocNIT"; version="1.0"; sha256="18vxyh1wcq6dv62xf2dyl4226cd00n4hlbaqnynl9j5gnrmmsvi1"; depends=[]; }; + rocTree = derive2 { name="rocTree"; version="1.1.1"; sha256="1hd5v47gymffg5829swpd38xscm4vq75d46fibwkrr7jp9iy37ra"; depends=[data_tree DiagrammeR flexsurv ggplot2 MASS Rcpp RcppArmadillo survival]; }; rocc = derive2 { name="rocc"; version="1.3"; sha256="1j15l28c7kv7x850ycjprqi5gpbsl6wfv97h9lbrx11q5l4r9ivb"; depends=[ROCR]; }; roccv = derive2 { name="roccv"; version="1.2"; sha256="18kq2gzcbz97dw168xppql8k3slpkfl8yv1d8ac48damlhvipif1"; depends=[glmnet pROC]; }; rock = derive2 { name="rock"; version="0.1.0"; sha256="0plyn9n3ngbdakdv98ywakr5xgkwqkwspla3pdmsi6w12zsvkak8"; depends=[data_tree DiagrammeR dplyr glue purrr yum]; }; @@ -13015,52 +13504,56 @@ in with self; { rococo = derive2 { name="rococo"; version="1.1.7"; sha256="1fp3kk5j9kc0vyr50rlbsxjc9p3qz5137sifxsbd297p7zj1fcs2"; depends=[Rcpp]; }; rocsvm_path = derive2 { name="rocsvm.path"; version="0.1.0"; sha256="1pd59bzcz96sxpp725pqa7pjh2gdrfapbilp4wccjkf5290zw56v"; depends=[quadprog svmpath]; }; rodd = derive2 { name="rodd"; version="0.2-1"; sha256="01zrkw4lr21vxk2grfc37iyrcipfdcj5m0i7gnxsvs435y9fqagd"; depends=[Matrix matrixcalc numDeriv quadprog rootSolve]; }; - rodeo = derive2 { name="rodeo"; version="0.7.5"; sha256="0825py3a41ccbd1dplkv1hci11wcp0ai5m37489cjg4gqaka7qgn"; depends=[deSolve R6]; }; + rodeo = derive2 { name="rodeo"; version="0.7.6"; sha256="040ngsvaqknmhkmm1fnbdqylb58hglgyn4znsrccigx6w8m7qfnp"; depends=[deSolve R6]; }; rodham = derive2 { name="rodham"; version="0.1.1"; sha256="15mrlx7azvwkwjgfplvs5fhk2nwlg9pay2l99q327p8hx87jr8ra"; depends=[jsonlite plyr splitstackshape stringr tibble]; }; - roll = derive2 { name="roll"; version="1.1.4"; sha256="1f0z12bp71sgjj6im7cca8bxkm5x6z1y4fcspmpdw6dc2hli36zx"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + roll = derive2 { name="roll"; version="1.1.6"; sha256="1crzr0kqdls08n6i3769zrxbxvh2m4hv5k3xi6ky6ps8hhicwqc9"; depends=[Rcpp RcppArmadillo RcppParallel]; }; rollRegres = derive2 { name="rollRegres"; version="0.1.3"; sha256="1rf6hdbndindq6kr5yzyqq4jy1c11shfdvjb8mwm957dd0kbs3rx"; depends=[checkmate Rcpp RcppArmadillo]; }; rollbar = derive2 { name="rollbar"; version="0.1.0"; sha256="1q2ym0vkgbdnibxmwx0bp9c20g3bm8fzwwgs3j4bxg1ydg3gnkj4"; depends=[httr]; }; rolldown = derive2 { name="rolldown"; version="0.1"; sha256="1awr8lcxz7y9mjhia4p85jvixc72gj525gk2jjl13njgq6shp0b5"; depends=[bookdown htmltools jsonlite]; }; - rollmatch = derive2 { name="rollmatch"; version="2.0.1"; sha256="1nyxsl2n8bnx31i78pzq0b19d58w70rqdn62bzrxdd11h9ph2dpr"; depends=[dplyr magrittr]; }; + rollmatch = derive2 { name="rollmatch"; version="2.0.2"; sha256="1bm1yc2z9byj4m9gz0il47y8drd3qzsb5lwb22a22axy306lqfqj"; depends=[dplyr magrittr]; }; roloc = derive2 { name="roloc"; version="0.1-1"; sha256="0xynj12gp010c23f6ll9p343vwgxwa22s771p1w2pi65cj2ixhas"; depends=[colorspace]; }; rolocISCCNBS = derive2 { name="rolocISCCNBS"; version="0.1"; sha256="100jh5m2c1zp5wg3wd4y2i47dzx1j0g6lfwyqmwk4bz99yzzz5am"; depends=[colorspace roloc]; }; rolr = derive2 { name="rolr"; version="1.0.0"; sha256="04nm4q0mlr4w6jb0frykzlyknfn3gn02ysqr5ll5jch6wawichy2"; depends=[survival]; }; rolypoly = derive2 { name="rolypoly"; version="0.1.0"; sha256="11nf7in6n03675l11ynl4rp20rlzy7jli3m518s4sqqxdm8f8ci7"; depends=[data_table dplyr foreach ggplot2 glmnet MASS Matrix matrixcalc]; }; - rootSolve = derive2 { name="rootSolve"; version="1.8.2"; sha256="0rj7c4zcrzgz7sb0vgvh7swpfafnw4040cxp7ypas3s8fnihn54l"; depends=[]; }; + rootSolve = derive2 { name="rootSolve"; version="1.8.2.1"; sha256="0c9hhgq1pgqdg80a6n2ssfbj5nyaf97y4iiya7j7l6b34qc53128"; depends=[]; }; rootWishart = derive2 { name="rootWishart"; version="0.4.1"; sha256="1l9pr3i20hi5k02qnlb3blxhlvp2j0njn74xslw3gcjvyzjlr12j"; depends=[BH Rcpp RcppEigen]; }; roots = derive2 { name="roots"; version="1.0"; sha256="1ssmmmrg18xmqxs6f7dqv07357iwcvk21j1gxsl8s9njbj2plxai"; depends=[animation igraph rARPACK]; }; rope = derive2 { name="rope"; version="1.0"; sha256="06qp6h8cjnz0yacm4r39k99hrw74iyq16h5mqfcki7sf3zqbfm7r"; depends=[]; }; - ropenaq = derive2 { name="ropenaq"; version="0.2.9"; sha256="0lrm5nncybvcl0k4k8pwrdg3115wsi0zcspqscfyw1rd3w2h2yjg"; depends=[crul dplyr jsonlite lubridate magrittr rlang tidyr]; }; - ropenblas = derive2 { name="ropenblas"; version="0.2.4"; sha256="1in91cgm94mdifxgajf4rh1ilj33pgy6cdp63x2wack9ynkpkj4h"; depends=[cli fs getPass git2r glue magrittr pingr RCurl rstudioapi stringr XML]; }; + ropenaq = derive2 { name="ropenaq"; version="0.2.10"; sha256="0sjc5p3wp4x4k86dsxiz68xzyfj9xiz67qc5hsld6zy92vyc0pw2"; depends=[crul dplyr jsonlite lubridate magrittr rlang tidyr]; }; + ropenblas = derive2 { name="ropenblas"; version="0.2.7"; sha256="1d6zkgfsbai13697i14h1m6hbf859lmcl9n4x1wg517zrhh7iv1a"; depends=[cli fs getPass git2r glue magrittr pingr RCurl rlang rstudioapi stringr withr XML]; }; ropendata = derive2 { name="ropendata"; version="0.1.0"; sha256="1bv6y241abs6pb4wq5ybx9x4zh72kf8ffs3vlcgdsmhw4jwrsxdl"; depends=[httr jsonlite]; }; ropensecretsapi = derive2 { name="ropensecretsapi"; version="1.0.1"; sha256="0d4yl0h4am3blskdnzk119hk374c3vx0cg99r20w07yh8jfafrw7"; depends=[RCurl RJSONIO]; }; roperators = derive2 { name="roperators"; version="1.1.0"; sha256="0klmk1jmh1iysgf345qa6qyjmn1pkz072ha254k90flprgicg7c6"; depends=[]; }; - ropercenter = derive2 { name="ropercenter"; version="0.2.0"; sha256="1ghn666jhwmkxwrr8pc398nhzvg4y4097pa19m4b08d9mkg9iqlj"; depends=[dplyr foreign haven httr readr rvest stringr tibble tidyr xml2]; }; + ropercenter = derive2 { name="ropercenter"; version="0.3.1"; sha256="1lpqwlw1wqj1whv0wma2y4h16pc15f4c38icwq63nhicn4whzr5w"; depends=[dplyr foreign haven magrittr readr rio RSelenium stringr tibble tidyr]; }; roprov = derive2 { name="roprov"; version="0.1.2"; sha256="16w9i7svlkn2wbv35890f1zpcxilj0ar28d2xrdvmx7ni9vrz61q"; depends=[CodeDepends fastdigest igraph]; }; - roptim = derive2 { name="roptim"; version="0.1.4"; sha256="18iwmfij9whg5rvdza607hf41acahmi35c6yj9hj6p2jkcr0xdpm"; depends=[Rcpp RcppArmadillo]; }; + roptim = derive2 { name="roptim"; version="0.1.5"; sha256="0qcdvs62k9b0dsa68z86yn90ps5aqhxgwg43p2pjml6jjid4rjn9"; depends=[Rcpp RcppArmadillo]; }; + roptions = derive2 { name="roptions"; version="1.0.3"; sha256="1rcwzzyzaicvxh8zvqy9wgz5xsixgnizy9i4nh7l33zimm20lsdl"; depends=[ggplot2 plotly purrr]; }; rorcid = derive2 { name="rorcid"; version="0.6.4"; sha256="0v8h1d5dwx5aafw1dq64b8clhzc0ksnqpy5pfbid9c1f290xk907"; depends=[crul data_table fauxpas httr jsonlite tibble xml2]; }; rorqual_morpho = derive2 { name="rorqual.morpho"; version="0.1.1"; sha256="1475yhb5qwj4zpsc4gqqpzs7qvyddxwc63i1f4rhnv6id2hi4msp"; depends=[dplyr magrittr]; }; rorutadis = derive2 { name="rorutadis"; version="0.4.2"; sha256="13a7xj4qw1nd8xgrqhrki3php960lgy9gy38sg4kpvs4j2rwijzc"; depends=[ggplot2 gridExtra hitandrun Rglpk]; }; rosetta = derive2 { name="rosetta"; version="0.2.0"; sha256="0b5xcy9gzw8d71m2pyx1m71mnbdggckhd42c7pzhkivkl79n5wdz"; depends=[car ggplot2 ggrepel gridExtra lavaan lme4 multcompView pander plyr psych pwr rio ufs]; }; - rosetteApi = derive2 { name="rosetteApi"; version="1.14.3"; sha256="1fq5wg2rgcqv4x5045zgccpawgi6ac47hykfam9waqjnqy7r4y1a"; depends=[httr jsonlite]; }; + rosetteApi = derive2 { name="rosetteApi"; version="1.14.4"; sha256="166p3dvib0xpvhkb92b3imassv1b9mrblz2m05jai2nzlz0q7hzk"; depends=[httr jsonlite]; }; rosm = derive2 { name="rosm"; version="0.2.5"; sha256="10n3yzhk29i3mzbcg6nkjqgvwc9n53ax0d7imn9l4a9msa06as07"; depends=[abind curl jpeg plyr png prettymapr rgdal rjson sp]; }; rospca = derive2 { name="rospca"; version="1.0.4"; sha256="1pxm34xsc2610n0i6dwcm4rhn016yqb03f8vrm93r7285c04n4q7"; depends=[elasticnet mrfDepth mvtnorm pcaPP pracma robustbase rrcov rrcovHD]; }; rosqp = derive2 { name="rosqp"; version="0.1.0"; sha256="0975g7p75bq238g7lr200svsqm9i11z7l331r0igm5ycahljrlsm"; depends=[Matrix R6 Rcpp]; }; - rotasym = derive2 { name="rotasym"; version="1.0.7"; sha256="19m47cs96frqavgx8rhr4xjdf1yzd6fm3a7dpskicxgmdis1yxii"; depends=[Rcpp RcppArmadillo]; }; + rosr = derive2 { name="rosr"; version="0.0.10"; sha256="0z0l9m4avif2v33a7rilibpcyj4yfqbrw857kbdzf9pa7xph0i7d"; depends=[blogdown bookdown bookdownplus clipr devtools htmlwidgets knitr mindr rmarkdown rstudioapi shiny tinytex]; }; + rotasym = derive2 { name="rotasym"; version="1.0.8"; sha256="098zf928h1iy5m599gdlyqd5xhk5ng2i1ng8vlyg19xa0aqrl7j0"; depends=[Rcpp RcppArmadillo]; }; rotationForest = derive2 { name="rotationForest"; version="0.1.3"; sha256="1z2wk3mcs5hrahsxralidbc0dd8gxdbwjpr2f71g4g3isfx1ic8d"; depends=[rpart]; }; rotations = derive2 { name="rotations"; version="1.6.1"; sha256="175bbwj1bf58gwsw3721dsh8lsika5aqv787kfyjx041m4lar4zv"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo rgl sphereplot]; }; rotl = derive2 { name="rotl"; version="3.0.10"; sha256="0fh7fmaylv9490yhw6sknv03xmx5isp29mlr0xypyh6mwagngd1q"; depends=[ape assertthat httr jsonlite rentrez rncl]; }; rotor = derive2 { name="rotor"; version="0.2.4"; sha256="0m947mihnxjzsb64p5dgi4v1y1g3c172xlhdg08nzb2z21qg4r73"; depends=[dint R6]; }; - round = derive2 { name="round"; version="0.12-1"; sha256="0smvyszxvq5c5p1mhkpcjphnmijjxn05n70xvg5syij200gn60fm"; depends=[]; }; + round = derive2 { name="round"; version="0.12-2"; sha256="1kq06q2mbjid8icwahm02za2zp7519cwllx76ch76jyxhmrypcgg"; depends=[]; }; roundhouse = derive2 { name="roundhouse"; version="0.0.1"; sha256="142dw9ky6fyp5n8zf5lymx083gi56q6wxj4jm0m8cjb0khiqw2lq"; depends=[httr jsonlite]; }; routr = derive2 { name="routr"; version="0.4.0"; sha256="1vswq7vm80nwb50grr4cs290kbq5lx9b19dq0c2wlp9d2dxk50si"; depends=[assertthat digest httpuv R6 reqres stringi uuid]; }; - roxygen2 = derive2 { name="roxygen2"; version="7.1.0"; sha256="00s1wzx5960k8pzgpz4kikjf4k061hyhnd278y65q6n0wzv3d6vy"; depends=[brew commonmark desc digest knitr pkgload purrr R6 Rcpp rlang stringi stringr xml2]; }; + roxut = derive2 { name="roxut"; version="0.2.23"; sha256="1pn2invp7brmdvxzi21hi1pc5nss6d02k2nqps73i0yq7brzc7m2"; depends=[roxygen2]; }; + roxygen2 = derive2 { name="roxygen2"; version="7.1.1"; sha256="0qc8akwfwmaqsjaza87f5fi0zk6sh3l6j3assbs6chvx0gnmvidx"; depends=[brew commonmark desc digest knitr pkgload purrr R6 Rcpp rlang stringi stringr xml2]; }; roxygen2md = derive2 { name="roxygen2md"; version="1.0.0"; sha256="1gvrfy0sk5qi8d93zxj5f7xgnnw0w38zyxdik4ckf0pkk0zdm27a"; depends=[desc devtools enc rex rlang tibble usethis withr]; }; + roxytest = derive2 { name="roxytest"; version="0.0.1"; sha256="166m0pklgryh3vildg0bvzh9gs3p71sf61ivgkvkvyy9vhvnp3jf"; depends=[roxygen2]; }; royston = derive2 { name="royston"; version="1.2"; sha256="1rywc89qzx0hldbq10201bjdhz60pq2gmgd9b9j52mza3w4canjz"; depends=[moments nortest]; }; rpact = derive2 { name="rpact"; version="2.0.6"; sha256="09ikjcvz6jisbl387j5idypwxqn2ir55cq8f19klwc0p0d113wg4"; depends=[Rcpp]; }; rpanel = derive2 { name="rpanel"; version="1.1-4"; sha256="0yzasb4k5jcx3wfsll9k9alyrwc0l1x6pk91nj7cqrdiapw8j519"; depends=[]; }; rpart = derive2 { name="rpart"; version="4.1-15"; sha256="0p5frya963ppn476p5dxs2mnarsalksr6gw9zzmjsn8ikq7bx3ib"; depends=[]; }; - rpart_LAD = derive2 { name="rpart.LAD"; version="0.1.1"; sha256="08gmfpp7dllqyhxbls7bahrsz0jw4dnqd02j9l23lfs4fvwgb3w8"; depends=[Rcpp rpart]; }; + rpart_LAD = derive2 { name="rpart.LAD"; version="0.1.2"; sha256="1v1arv5b02n0jvyifb5km9w3z3wxg9x9g3g4xck4s319z5g6lp7n"; depends=[Rcpp rpart]; }; rpart_plot = derive2 { name="rpart.plot"; version="3.0.8"; sha256="0y8054jw44jkjg8ijp3p2grsqwrmsdfzk8vps9ksgm7mgfq5732d"; depends=[rpart]; }; rpart_utils = derive2 { name="rpart.utils"; version="0.5"; sha256="00ahvmly6cdf7qhhcic0dbjlljqq8kbhx15rc7vrkd3hzd55c0im"; depends=[rpart]; }; rpartScore = derive2 { name="rpartScore"; version="1.0-1"; sha256="15zamlzbf6avir8zfw88531zg5c0a6sc5r9v5cy9h08ypf34xf4y"; depends=[rpart]; }; @@ -13068,42 +13561,44 @@ in with self; { rpatrec = derive2 { name="rpatrec"; version="1.0.1"; sha256="0zj461frf6n5s97zq7r52q0blsn2xq2759impgz6v4pr87gmq0si"; depends=[np]; }; rpca = derive2 { name="rpca"; version="0.2.3"; sha256="135q3g8jmn9rwamrc9ss45cnbfyw8kxcbrf0kinw8asz70fihj9z"; depends=[]; }; rpcdsearch = derive2 { name="rpcdsearch"; version="1.0"; sha256="17g3x15qgv2hamlj451sb88i83n8svw5vnmjpijp5cnn5d1jx0d6"; depends=[assertthat combinat dplyr stringr xlsx]; }; - rpdo = derive2 { name="rpdo"; version="0.3.0"; sha256="1l3rrkcpfgs6wgir6ls34385ihb179xbpxrbpkf7cnpwy8hc7amk"; depends=[chk]; }; - rpf = derive2 { name="rpf"; version="1.0.3"; sha256="1i2kqd7nx55nn35qnw89xmnqk23x9c8xhkh736c2xg7k2ai84ybl"; depends=[lifecycle mvtnorm Rcpp RcppEigen]; }; + rpdo = derive2 { name="rpdo"; version="0.3.1"; sha256="0yhg858i5a6s68000a74l4gldycbfmcwcvkk5zhjqzpxzdm7pqb2"; depends=[chk lifecycle]; }; + rpf = derive2 { name="rpf"; version="1.0.4"; sha256="17crcgsbcsh0c00n7bgdqfnd7n1vzz7drfxjs7d18253yl5x44pl"; depends=[lifecycle mvtnorm Rcpp RcppEigen]; }; rpg = derive2 { name="rpg"; version="1.6"; sha256="1vn5cswrkmw98z1dr0f0yjkz3n8kwvjb4zknqg81fzqsagfc89yx"; depends=[getPass RApiSerialize Rcpp uuid]; }; - rphylopic = derive2 { name="rphylopic"; version="0.2.0"; sha256="0wmdvdz75bbwhn3qk8ic5lj256ik27d7vxrq9hg8c9rqzygj8wh3"; depends=[crul ggplot2 gridBase jsonlite png]; }; + rphylopic = derive2 { name="rphylopic"; version="0.3.0"; sha256="088aafylypsaxfl903qhi8kigkchmdzndibxic4sgiycry6xvxrz"; depends=[crul ggplot2 gridBase jsonlite png]; }; rpicosat = derive2 { name="rpicosat"; version="1.0.1"; sha256="1zj2d6jairmvya91vhv9kpkf34zmzl9vlha5yvfjj0j0apmqc0li"; depends=[]; }; rpinterest = derive2 { name="rpinterest"; version="0.3.1"; sha256="0kkf73byhgzqxw85wda3nh7qsq81pc035vi6z3fhnvb9ssszwakc"; depends=[httr magrittr rjson]; }; rpivotTable = derive2 { name="rpivotTable"; version="0.3.0"; sha256="0ndhsw4nnz6wf0v8dh4sz8867m01jjkzw6aq7f490z1ypa3d9fv5"; depends=[htmlwidgets]; }; rplos = derive2 { name="rplos"; version="0.9.0"; sha256="104vwyf9lz2d07dlxpg1ivvp8q6bqq4jszrhdsy0y2qbi97424br"; depends=[crul dplyr ggplot2 jsonlite lubridate plyr reshape2 solrium whisker]; }; rplotengine = derive2 { name="rplotengine"; version="1.0-7"; sha256="1bbciq84l0h6g4qajlcqg3v66g2rspflv6k7x5h5qzwlcb4p4dps"; depends=[xtable]; }; - rpls = derive2 { name="rpls"; version="0.4.0"; sha256="1dhnm8z6cn316p7mnnpc7l3acs2rq0bwc29amqg0fy4wyy54nrgc"; depends=[pcaPP robustbase]; }; + rpls = derive2 { name="rpls"; version="0.6.0"; sha256="0r3y63pi4d7hfzs53d9w23ymmk86gvm85v0dx7n1gicha5nn1mk8"; depends=[pcaPP robustbase]; }; + rplum = derive2 { name="rplum"; version="0.1.5.1"; sha256="0w2dp2g5r88xdh3kw8wvis7gf3c9vmzx1byyar75j68xka1mqqyb"; depends=[coda Rcpp]; }; rpmodel = derive2 { name="rpmodel"; version="1.0.4"; sha256="1rbygxk6dbi3pqxri5myc7f3y04haa0slpiaa330malg3dw5a9gc"; depends=[rlang]; }; rpms = derive2 { name="rpms"; version="0.4.0"; sha256="10zw0xln0vjrzrilyn67nnw13aadnskzca1930fvb483c691bm36"; depends=[Rcpp RcppArmadillo]; }; rpnf = derive2 { name="rpnf"; version="1.0.5"; sha256="07byg0ym4d2cr6fp74z379jhsaw4c0xrwf622dvhwa4frn4anl60"; depends=[]; }; + rportfolio = derive2 { name="rportfolio"; version="0.0.3"; sha256="1pj08qz1qmdcyxp629lyfggbgzr36wrjir0fj6hpgf5zm588bqiy"; depends=[xts zoo]; }; rportfolios = derive2 { name="rportfolios"; version="1.0-1"; sha256="00xxh85jpl0rw8fv84i7zmq0psc92pq7hharnr4szbmhgz8kbc35"; depends=[truncdist]; }; rpostgis = derive2 { name="rpostgis"; version="1.4.3"; sha256="04x5qdz0kznxnp9kygp0m2rjxyhqfz3mc81mcr4aw6cy5p4zp9aq"; depends=[DBI raster rgeos RPostgreSQL sp]; }; rpostgisLT = derive2 { name="rpostgisLT"; version="0.6.0"; sha256="1adwpkfndm6n3s9xcx8zrwnj6bmgvq4nzs072fnl5i6kjy6ngjm6"; depends=[adehabitatLT DBI htmltools leaflet lubridate magrittr mapview rpostgis RPostgreSQL sf shiny shinyWidgets sp]; }; - rpql = derive2 { name="rpql"; version="0.7"; sha256="18llgwk1jfwf3y1dabpc508kfb1k4yh4cr4k76azkziv11arbh0c"; depends=[gamlss_dist lme4 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; + rpql = derive2 { name="rpql"; version="0.8"; sha256="0iljs08pjnk4b08mgryzn70rxva723bk1hi3wyizx05lls2n8ly7"; depends=[gamlss_dist lme4 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; rpredictit = derive2 { name="rpredictit"; version="0.0.2"; sha256="1gsfcs5l83p4x0glhnq5hidh5rxwipklsj0nzkxaim65w9kqgx30"; depends=[dplyr DT dygraphs httr jsonlite magrittr quantmod shiny stringr xts]; }; rprev = derive2 { name="rprev"; version="1.0.4"; sha256="1dzqbvfx3fcgfz3b18wwaaprvp0szjfshm8dgmj3r4vyzx71v9lv"; depends=[data_table dplyr ggplot2 lazyeval lubridate magrittr survival tidyr]; }; rprime = derive2 { name="rprime"; version="0.1.0"; sha256="1v6n1qi0i7x8xgizbyvp1mnwc316lsan4rvam44fgjj45fcd79gd"; depends=[assertthat plyr stringi stringr]; }; rprintf = derive2 { name="rprintf"; version="0.2.1"; sha256="0rwqpln0igxb4m6d6jyp7h3shfb8sbp0kj7cgkffjp88hn9qm4h3"; depends=[stringi]; }; rprojroot = derive2 { name="rprojroot"; version="1.3-2"; sha256="12r3fdxmi2pmwn6ic3rhg0b20ll5z420m0d8fziv1n21961namnz"; depends=[backports]; }; - rpsftm = derive2 { name="rpsftm"; version="1.2.6"; sha256="1bidxyvn8r3pdd3yf1clcc4dil3wsl3hc4kznyhhk67870p25n6s"; depends=[ggplot2 rootSolve survival]; }; + rpsftm = derive2 { name="rpsftm"; version="1.2.7"; sha256="0ncf9ci39pd7p048cgvhl6phhk975xwyjm4aqs1b4hjy1nml4iz2"; depends=[ggplot2 survival]; }; rpst = derive2 { name="rpst"; version="1.0.0"; sha256="10cbgj67lqgh5bawwa0nwj9kfl3jg4vdm121kc61q199v8dw7nrz"; depends=[plotrix survival]; }; rpsychi = derive2 { name="rpsychi"; version="0.8"; sha256="1h40kbqvvwwjkz5hrclj6j22zhav3yyfbbhqahs1whwjkksnam4w"; depends=[gtools]; }; rptR = derive2 { name="rptR"; version="0.9.22"; sha256="0vvjc6qiq71d5wckl77z606q1fp43mgrfzp1bxcab96n5whb2r9k"; depends=[lme4 pbapply]; }; - rpubchem = derive2 { name="rpubchem"; version="1.5.10"; sha256="06j9ir65ykky5hdbyv74fnddwqd39jxvr6jig0kjqisc75k4spjz"; depends=[base64enc car data_table fingerprint iterators itertools RCurl RJSONIO stringr XML]; }; rpubs = derive2 { name="rpubs"; version="0.2.2"; sha256="18cnzhcvm7gx4k01ysqay53smrf8xqlbaszq41mny5c7qqh1fvpz"; depends=[rvest xml2]; }; rqPen = derive2 { name="rqPen"; version="2.2.2"; sha256="077kdvfdyp5h8630k8jigbz8mfyby8vkjiqxpqv0wfi6cqcjlaf2"; depends=[quantreg regpro]; }; - rqdatatable = derive2 { name="rqdatatable"; version="1.2.7"; sha256="1p41nc54h4fq57ps1ilm3sq3qr3xhi0bxxhl80ylai0qmb445jd4"; depends=[data_table rquery wrapr]; }; - rquery = derive2 { name="rquery"; version="1.4.4"; sha256="1ccy9pmgbm4q3kljgx1pjhg2059pnb6jbnxq63z1fhnb59rm4nya"; depends=[wrapr]; }; + rqdatatable = derive2 { name="rqdatatable"; version="1.2.8"; sha256="0xz56svv7aqikvk2jlbwf6qlawnv1ylxs5pr9yhmzfr671c85rqp"; depends=[data_table rquery wrapr]; }; + rquery = derive2 { name="rquery"; version="1.4.5"; sha256="0ha7v7h8f84ml4bsr5hcgghpjim332zlr3ng364qmxdif81z6v98"; depends=[wrapr]; }; rr = derive2 { name="rr"; version="1.4"; sha256="1c2h6ibjfwrjfqh1if3c90pdh0g2rf3p71j4p9w23xbbrx2l80pl"; depends=[arm coda magic MASS]; }; rr2 = derive2 { name="rr2"; version="1.0.2"; sha256="099vjg91ni2bnxlra18pvgsvzrl28zrj639cdjrh3wkpqv99d04q"; depends=[ape lme4 Matrix nlme phylolm]; }; rrBLUP = derive2 { name="rrBLUP"; version="4.6.1"; sha256="1ny48ra25rzx3k69pmzpd31ka2zhqyqiq1v7ann862j3ris0w8z9"; depends=[]; }; + rrapply = derive2 { name="rrapply"; version="1.1.0"; sha256="1h6bf7rf5s9smnj8gw7scaj60gnqwzwis1ak8r6pragzpgjkgiqm"; depends=[]; }; rrat = derive2 { name="rrat"; version="1.0.0"; sha256="1j1jd32pgggn5cqv66l63sw5p4hblgpznf33wd0zdbfapwy8rx4r"; depends=[quantreg]; }; - rrcov = derive2 { name="rrcov"; version="1.5-2"; sha256="0m62k58nabw7hjz1qyyf9a0d6lvcz5vcvpksjnq93zcfra9inr57"; depends=[lattice mvtnorm pcaPP robustbase]; }; + rrcov = derive2 { name="rrcov"; version="1.5-5"; sha256="0ag6q16ajkqwj28dk9vp4xkvqw26fqqqdxnz38gpszilirahfzqz"; depends=[lattice mvtnorm pcaPP robustbase]; }; rrcov3way = derive2 { name="rrcov3way"; version="0.1-18"; sha256="1gpjmmdca2waqks0qykj59p50v6pf1zgl81m5lhbrhpcr4rdr63l"; depends=[nnls robustbase rrcov]; }; rrcovHD = derive2 { name="rrcovHD"; version="0.2-6"; sha256="03dr42np7a0yl3hi2iz4xp5b6yrazx6vlsjrby6fcn9r8y1fmac9"; depends=[pcaPP pls Rcpp robustbase robustHD rrcov spls]; }; rrcovNA = derive2 { name="rrcovNA"; version="0.4-15"; sha256="0r60chxm7bpc6sis60rp8k8xchwfrfa3lrfaidvv22ipx2q0psp7"; depends=[cluster lattice norm robustbase rrcov]; }; @@ -13121,19 +13616,18 @@ in with self; { rromeo = derive2 { name="rromeo"; version="0.1.1"; sha256="1jjk5b41qg22a0zpjha2p2mfcb5q00gicqlxhkahjbj49q0c3mn9"; depends=[httr xml2]; }; rrpack = derive2 { name="rrpack"; version="0.1-11"; sha256="1bchha6dbkgc1raiks22cjmqzsias0c0frz8il67napkgmwlqk6d"; depends=[ggplot2 glmnet lassoshooting MASS Rcpp RcppArmadillo]; }; rrr = derive2 { name="rrr"; version="1.0.0"; sha256="0sv6k70mv325yjm8yjy4dw8cqc0xc071iiv94fk1l1yfz0n67prz"; depends=[dplyr GGally ggplot2 magrittr MASS plotly Rcpp]; }; - rrscale = derive2 { name="rrscale"; version="0.1.3"; sha256="0pf5pac883f1p6gidy2k1nrbrygi1va8r5h785449dhphx806bf5"; depends=[abind DEoptim doParallel foreach]; }; + rrscale = derive2 { name="rrscale"; version="1.0"; sha256="1s8ziwh95410i9p176xbsk9k6ccyihi2mqa5gaigcqrkb3dzyy08"; depends=[abind DEoptim nloptr]; }; rrtable = derive2 { name="rrtable"; version="0.2.1"; sha256="1hblrxn7vixcp32j3cij0xrkzvk31agi9dqgxrimcrzs7gjcd1j5"; depends=[devEMF editData flextable ggplot2 ggpubr magrittr moonBook officer purrr readr rlang rmarkdown rvg shiny shinyWidgets stringr ztable]; }; rrum = derive2 { name="rrum"; version="0.2.0"; sha256="0w0f2n14if2b8x7n6v8y8q2vghd8j7xm1xhpxnvy3z50flinwgm7"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; - rsMove = derive2 { name="rsMove"; version="0.2.7"; sha256="0an5kknfap7hrg62gvdvrylx79p6fjdmbryhzlrj60i8n7cnc1c1"; depends=[caret ggplot2 lubridate plyr pryr raster Rcpp RCurl sp]; }; rsae = derive2 { name="rsae"; version="0.1-5"; sha256="1f3ry3jwa6vg2vq2npx2pzzvfwadz8m48hjrqjk860nfjrymwgx5"; depends=[]; }; - rsample = derive2 { name="rsample"; version="0.0.6"; sha256="1va9zr2bbx7yld7am141d3xjhzcndlgng9pyq6i2bc8kqbxvw6kj"; depends=[dplyr furrr generics purrr rlang tibble tidyr tidyselect]; }; + rsample = derive2 { name="rsample"; version="0.0.7"; sha256="0s6hgq0rcv3ianyidq3n9z34y5ww51gaggqkwmwns9yyxmwfjcm8"; depends=[dplyr furrr generics purrr rlang tibble tidyr tidyselect vctrs]; }; rsatscan = derive2 { name="rsatscan"; version="0.3.9200"; sha256="00vgby24jknq8nl7rnqcwg7gawcxhwq8b7m98vjx2hkqx39n4g21"; depends=[foreign]; }; rscala = derive2 { name="rscala"; version="3.2.19"; sha256="1wq0wrdbh0gi0bx4m9526qlbjm7nxxqgc17ikdx5mrhcy2f61hjk"; depends=[]; }; rscimark = derive2 { name="rscimark"; version="1.0"; sha256="1jsjz4d5bnxb90qqzz42m4nyvm8d8w8bs0m1r5g2n78zmckqb8vy"; depends=[checkmate]; }; rsconnect = derive2 { name="rsconnect"; version="0.8.16"; sha256="05ii0p0p7xpf8z0c1594s5q7wpwcs7lmlddrd67s5p2ka5m8qwiz"; depends=[curl digest jsonlite openssl packrat rstudioapi yaml]; }; rscontract = derive2 { name="rscontract"; version="0.1.1"; sha256="1s19p9cga0qm1diblqf3rmcbm3agiimq4lhfgk004cg7rhaa1lyh"; depends=[]; }; rscopus = derive2 { name="rscopus"; version="0.6.6"; sha256="0kl6rv0j2396b8izvy0lp1f588il6w3yhq6d4swv8x8z14rsgcpw"; depends=[dplyr glue httr jsonlite plyr tidyr]; }; - rscorecard = derive2 { name="rscorecard"; version="0.15.0"; sha256="1pjzgsd9g0prbzkhm99bbd5kbqbygvxpr3flcdn8dj3fmgh21m1y"; depends=[dplyr httr jsonlite lazyeval magrittr purrr tidyr tidyselect]; }; + rscorecard = derive2 { name="rscorecard"; version="0.16.0"; sha256="0lnxwwf2km9y527k173c8jiy4ijlcj27ykwnnwzbjd3xvkjj0ldb"; depends=[dplyr httr jsonlite lazyeval magrittr purrr tidyr tidyselect]; }; rsdepth = derive2 { name="rsdepth"; version="0.1-5"; sha256="064jbb6gnx0sm41w3sbi6mvsbzsfkjqfici6frk8sfm9ybvm591j"; depends=[]; }; rsdmx = derive2 { name="rsdmx"; version="0.5-14"; sha256="1b4x87h8kfw8yhmfsjf9l1i0afr7bgvyp5a369m5gn6m07dvlbp9"; depends=[plyr RCurl XML]; }; rseedcalc = derive2 { name="rseedcalc"; version="1.3"; sha256="18zmpjv6g8f7pmvqlp6khxyys9kdnq5x4zxwb6gwybsh4jxrymkp"; depends=[]; }; @@ -13141,28 +13635,28 @@ in with self; { rsf = derive2 { name="rsf"; version="0.2.2"; sha256="016q6yly2vl6q9mkff2krri2rmzsm9gc9gippd8l38h5c8ri6cdl"; depends=[bookdown knitr magrittr rlang usethis yaml ymlthis]; }; rsimsum = derive2 { name="rsimsum"; version="0.9.0"; sha256="02bnb6rr5dzvbywp88sp81lb6ibxlfqiba5vsgp5manx1zmbgjy0"; depends=[checkmate ggplot2 ggridges knitr rlang scales]; }; rsinaica = derive2 { name="rsinaica"; version="0.6.1"; sha256="1ba19b2fgnnl50qp6hgjppgxbadghq68qap9f0m51k2k3ijgfiwn"; depends=[dplyr httr jsonlite lubridate stringr]; }; - rskey = derive2 { name="rskey"; version="0.4.1"; sha256="0l9z5zbii4wi7da6cl9mr62zn72pc3dgfhk6dp8sjx4jbzpa94s3"; depends=[berryFunctions miniUI rstudioapi shiny]; }; - rsleep = derive2 { name="rsleep"; version="1.0.1"; sha256="0kjb5sgv1y50cqg54dy5cx9ngr64hx2bhfav314vm2alnxsk19jh"; depends=[edfReader ggplot2 jsonlite phonTools signal]; }; - rslp = derive2 { name="rslp"; version="0.1.0"; sha256="06glpdsd309058kxww114j9sshvj6gw9g5sdm4zkmzq3cl91fa6h"; depends=[magrittr plyr stringi stringr]; }; + rskey = derive2 { name="rskey"; version="0.4.4"; sha256="1la3apypp1kk425r753vqwm3nk9zmynp9gix6db0ckkssw0fjxpw"; depends=[berryFunctions rstudioapi]; }; + rsleep = derive2 { name="rsleep"; version="1.0.3"; sha256="11r32xxqdi0cvx67x8yrb4c36c73mgdy18sayg18cnsqb9qhxvyz"; depends=[edfReader ggplot2 jsonlite phonTools psd signal]; }; + rslp = derive2 { name="rslp"; version="0.2.0"; sha256="186k1gngirqhvhii4ysq77wjf5gf75c7gya73minb0pfg9fn16l7"; depends=[magrittr plyr stringi stringr tokenizers]; }; rslurm = derive2 { name="rslurm"; version="0.5.0"; sha256="0dpxglcsqa2k0nak10515ga13c46rb4mrbpbr3gv7xckg6347zqg"; depends=[whisker]; }; rsm = derive2 { name="rsm"; version="2.10"; sha256="0a6bxrb0qad40lnigqjv2pnwwzcwi1rcmh9gb1a1b00k1n3mnmlc"; depends=[estimability]; }; rsnps = derive2 { name="rsnps"; version="0.3.0"; sha256="1ym58gqpvn708228pbkq1klvl60a60bwxwm0arzzad3wh1wansxj"; depends=[crul data_table jsonlite plyr stringr XML xml2]; }; - rsoi = derive2 { name="rsoi"; version="0.5.2"; sha256="1dzmxsabldak6qmivxmfq98vcd7720xagnqrnxdksavgixp6w54h"; depends=[curl memoise]; }; + rsoi = derive2 { name="rsoi"; version="0.5.4"; sha256="1gchznfshp91i3if8077qph26flxzwa2xrw3q488ah50725d63hw"; depends=[curl memoise]; }; rsolr = derive2 { name="rsolr"; version="0.0.9"; sha256="1mxvzb7wvm1agv35r82pr1hxa3fimixcwf36j98qjlxj9p7valrw"; depends=[BiocGenerics graph RCurl restfulr rjson S4Vectors XML]; }; rspa = derive2 { name="rspa"; version="0.2.5"; sha256="0jvrr3jaw66zqi5pal9dycpac24dn9v7lf2m63q01wmd8m3mlnv9"; depends=[lintools validate]; }; rsparkling = derive2 { name="rsparkling"; version="0.2.19"; sha256="1rb43lslhlg8jpniirzch8gnl86x6d3shcfp9fpxm0qd3fqrlm6z"; depends=[h2o sparklyr]; }; rsparse = derive2 { name="rsparse"; version="0.4.0"; sha256="1blg59gsidh0sn6yy761pisz2phml0hzgqc24s5s8q9q903rddr9"; depends=[data_table float lgr Matrix Rcpp RcppArmadillo RhpcBLASctl]; }; rspiro = derive2 { name="rspiro"; version="0.2"; sha256="1gjil39ib9p86a7r3i03h01x2dsc9y283rnp65xvavrzmmgz87b4"; depends=[]; }; rsppfp = derive2 { name="rsppfp"; version="1.0.4"; sha256="123yv54i58xj4wx9n08qp50mm4l271fm1zhzimrxx22wn2bg8zy5"; depends=[doParallel dplyr foreach igraph stringr tidyr]; }; - rsq = derive2 { name="rsq"; version="1.1"; sha256="0pvnyf875jybid16mg1y3dmnlrk1vahckhr5zaai1a0k4i6mh4jf"; depends=[MASS]; }; + rsq = derive2 { name="rsq"; version="2.0"; sha256="1sqajp7fhj918s8qzijijs3srf7qc3cixxwljr61715q4p6m7wzw"; depends=[lme4 MASS Matrix nlme numDeriv]; }; rstack = derive2 { name="rstack"; version="1.0.0"; sha256="19vbfmkd6ymadah1y1w5rn52f4hviddccyc6qj2cv5viqwbwws2z"; depends=[R6]; }; rstackdeque = derive2 { name="rstackdeque"; version="1.1.1"; sha256="0i1qqbfj0yrqbkad8bqc1qlxmyxpn7zycbnq83cdmfbilcmi87ql"; depends=[]; }; - rstan = derive2 { name="rstan"; version="2.19.3"; sha256="128ndwjrhf8b1qvvqz4bl13qlm8718z9qs5ryc6gsdr3vk65s0np"; depends=[BH ggplot2 gridExtra inline loo pkgbuild Rcpp RcppEigen StanHeaders]; }; - rstanarm = derive2 { name="rstanarm"; version="2.19.3"; sha256="0gxjq8bdlvdd8kn3dhp12xlymdab036r7n12lzmd3xlkl4cnxq3s"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen RcppParallel rstan rstantools shinystan StanHeaders survival]; }; - rstanemax = derive2 { name="rstanemax"; version="0.1.1"; sha256="0yvinnz0ybrarl1p36ibaiflava1hhdnh4avjgc5iq0b3nr6x42g"; depends=[BH dplyr ggplot2 magrittr purrr Rcpp RcppEigen rstan rstantools StanHeaders tidyr]; }; - rstantools = derive2 { name="rstantools"; version="2.0.0"; sha256="1il0pn4ksbdkska5fmhvgaicvwnnc6cs08g6ags9fj1xkjiqmrsa"; depends=[desc Rcpp]; }; + rstan = derive2 { name="rstan"; version="2.21.2"; sha256="0jh58qfrksd2j9w2zy4bajryivgp36m3xdb9mjrjqbk1ib9h83p3"; depends=[BH ggplot2 gridExtra inline loo pkgbuild Rcpp RcppEigen RcppParallel StanHeaders V8 withr]; }; + rstanarm = derive2 { name="rstanarm"; version="2.21.1"; sha256="04ggzak3f7jaxza3dxyrmxp5b48qcgyspy22ykbhr03g4hzp7jk8"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen RcppParallel rstan rstantools shinystan StanHeaders survival]; }; + rstanemax = derive2 { name="rstanemax"; version="0.1.2"; sha256="1k3ng4sh17q69iar03cg6lkw0mfpka9vlv5djih0n3wb2lfsz2k2"; depends=[BH dplyr ggplot2 magrittr purrr Rcpp RcppEigen rstan rstantools StanHeaders tidyr]; }; + rstantools = derive2 { name="rstantools"; version="2.1.1"; sha256="0b9x8rzj3dr4m7yjx476nn42z22xd1xnw85m9frfwxy5ivg1any9"; depends=[desc Rcpp RcppParallel]; }; rstap = derive2 { name="rstap"; version="1.0.3"; sha256="176z39k54l5r60md6wziz828c46alv2pmqivvmhvb358crrb8x7n"; depends=[abind bayesplot BH dplyr ggplot2 lme4 loo Matrix nlme pracma Rcpp RcppEigen rstan rstantools StanHeaders]; }; - rstatix = derive2 { name="rstatix"; version="0.4.0"; sha256="099kaldzlkyxg7af4wrhpqp07d3ha1bm9zk4fcdkgqw9nknbp00z"; depends=[broom car corrplot dplyr magrittr purrr rlang tibble tidyr tidyselect]; }; + rstatix = derive2 { name="rstatix"; version="0.6.0"; sha256="0nwwvxwr4z3j4n9z8cnvwghppc836g47n0ia98chk272qwh8xcpb"; depends=[broom car corrplot dplyr generics magrittr purrr rlang tibble tidyr tidyselect]; }; rstatscn = derive2 { name="rstatscn"; version="1.1.3"; sha256="07w7ixq1faq7mif2ksxcgl8n6ali9h0wx0nb2yz4kbdgvz68r7b9"; depends=[httr jsonlite]; }; rstiefel = derive2 { name="rstiefel"; version="1.0.0"; sha256="0g09fpp3432v78gqgn0hiva6zqr8yqn379wz4428wanmiskqr3f0"; depends=[]; }; rstpm2 = derive2 { name="rstpm2"; version="1.5.1"; sha256="0p1zqqjss8i5wca4qvr56d6p9ak20ki4cfbxja1wrhkp4kii29r6"; depends=[bbmle deSolve fastGHQuad mgcv Rcpp RcppArmadillo survival]; }; @@ -13172,26 +13666,31 @@ in with self; { rsurface = derive2 { name="rsurface"; version="1.1.0"; sha256="1pymbgvr72nqd66wap5wrcizzx2k9bfr6vkxv6dkvjmi8q7jl2gv"; depends=[plotly rsm]; }; rsurfer = derive2 { name="rsurfer"; version="0.2"; sha256="14zd8fhak12yha6miwb84085722v5ipk8lagijhc6af291kp70i9"; depends=[gdata stringr]; }; rsvd = derive2 { name="rsvd"; version="1.0.3"; sha256="1fvrw46fl5xb2akaa4mp8nja4h7nn4bdhnjdrk22fsdfqc7hwmhk"; depends=[Matrix]; }; - rsvg = derive2 { name="rsvg"; version="1.3"; sha256="11mccgf6hfskg45wqc114sx3qy2r494y6axdf73z6xwhs1wpm97g"; depends=[]; }; + rsvg = derive2 { name="rsvg"; version="2.1"; sha256="0bxnwa9sbzx6jlxrzh3ymjq81vkxil2qx7kk7wp13a0cql7dhxcn"; depends=[]; }; + rsyncrosim = derive2 { name="rsyncrosim"; version="1.2.4"; sha256="1m8nmw5jq69zgzgjvr7f03skvrry0w4lcf1yg64viaggvm9qyysf"; depends=[DBI raster RSQLite]; }; + rsyntax = derive2 { name="rsyntax"; version="0.1.0"; sha256="177f6hy3qzbr865ws3afs3ahg3h841ig06crbl0vdjcr02y71mwv"; depends=[base64enc data_table digest igraph magrittr png rlang stringi tidyselect tokenbrowser]; }; rsyslog = derive2 { name="rsyslog"; version="1.0.1"; sha256="1i33bpv894jk7cixsvn85h1g532zj39f8dfqq8cyzgsav9wba2y4"; depends=[]; }; + rt = derive2 { name="rt"; version="1.0.0"; sha256="1fhi3qnb2y3p96nksbsz49v0q38hg3zfjm7hyk3mpkxn24a188hp"; depends=[httr stringr]; }; rt_test = derive2 { name="rt.test"; version="1.18.7.9"; sha256="0ywkdjvfzmrmmsfkz4jbhwzbzv7wivx80xy8wr92dch1862h6ias"; depends=[]; }; rt3 = derive2 { name="rt3"; version="0.1.2"; sha256="1fqbymkz4csavkxrs26glzrh0kw3qy9x5smgddgda9a1dxh9ljkm"; depends=[]; }; rtape = derive2 { name="rtape"; version="2.2"; sha256="0q7rs7pc1k1kayr734lvh367j5qig2nnq5mgak1wbpimhl7z3wm7"; depends=[]; }; rtdists = derive2 { name="rtdists"; version="0.11-2"; sha256="0fap15bkxn2azd5a4j3q9mxpif5ff3y2vb8rm4xnh8l0sl1lw7cs"; depends=[evd gsl msm Rcpp]; }; rtematres = derive2 { name="rtematres"; version="0.2"; sha256="1d0vrprvnlk4hl2dbc6px9xn9kx9d1qvlqxd798hzda6qg5wwvf2"; depends=[gdata plyr RCurl XML]; }; - rtemps = derive2 { name="rtemps"; version="0.4.0"; sha256="04ipklqsx4c7h95zj76g55h5kq33mabkydzr9lcvsfrc7ms7jjmi"; depends=[bookdown DT ggplot2 knitr rmarkdown xfun]; }; + rtemps = derive2 { name="rtemps"; version="0.7.0"; sha256="0a7f4503zjcwl92xy59f82k6y3fwxkhm8dgpds8bh9x3154x7ryx"; depends=[bookdown DT ggplot2 knitr rmarkdown xfun]; }; rtext = derive2 { name="rtext"; version="0.1.21"; sha256="0j2jfz0mz9552dwa78d527lxipmj5ql8q8np8qq5jw4ka6wj5lbs"; depends=[digest hellno magrittr R6 Rcpp RSQLite stringb]; }; rtf = derive2 { name="rtf"; version="0.4-14.1"; sha256="032ff0yavqmd2d9svgwkmvxwh0cxjbac6pj48v4cshi898f02rhh"; depends=[R_methodsS3 R_oo]; }; rticles = derive2 { name="rticles"; version="0.14"; sha256="1377fib4asazhhki4aajvld0wa35vd3zjvyl3lf2hjm2qk3vyak7"; depends=[knitr rmarkdown tinytex xfun yaml]; }; - rtide = derive2 { name="rtide"; version="0.0.7"; sha256="1l2fradbknlbgsm6nj89k9bhg7fxdrh0wcnar0mdgqqcr8qzs8hk"; depends=[abind chk dttr2 tibble]; }; + rtide = derive2 { name="rtide"; version="0.0.8"; sha256="0q3fcxxlipj12128p25h5hg92snimlpan86q9bncp20sz1skrwzx"; depends=[abind chk dttr2 tibble]; }; + rties = derive2 { name="rties"; version="5.0.0"; sha256="1mxgzrlf41hhawab2664az151fmmhm8ivnnimmzm538yliilc0b7"; depends=[DataCombine DescTools deSolve dplyr ggplot2 gridExtra interactions lattice lme4 MASS mclust nlme nnet plyr zoo]; }; rtiff = derive2 { name="rtiff"; version="1.4.7"; sha256="0l0chjbn8kipnhi37zshphxmxga6id39rm5gzz5gjrv8bnaaxxqb"; depends=[pixmap]; }; - rtika = derive2 { name="rtika"; version="1.23"; sha256="0m27vv4jb39lqnv0cnx6wznn3h8ia2if0np670wf1345v9i4ygyh"; depends=[curl digest rappdirs sys]; }; + rtika = derive2 { name="rtika"; version="1.24.1"; sha256="12r9br3pn3llaixa5dn6g5468nsy5adajgdnnvfyhhbkrr0jwpi5"; depends=[curl digest rappdirs sys]; }; rtimicropem = derive2 { name="rtimicropem"; version="1.4.0"; sha256="0z6bnzks8mcb871m3z5b3cd883hj1i17swjgly005hvwbvi9h61f"; depends=[changepoint dplyr fs ggplot2 knitr lazyeval lubridate R6 rbokeh readr stringr tibble tidyr]; }; rtip = derive2 { name="rtip"; version="1.1.1"; sha256="0lfny8nvgnf90xsmgmr32nzjbw8117m4vw7d0bc3xm4pzpnymjdq"; depends=[boot ggplot2 mvtnorm plyr rootSolve]; }; rtist = derive2 { name="rtist"; version="1.0.0"; sha256="0p4jlz0z0nbvmixdrym6nqagz2i28zbsijcj785rd6wiy72d2hg5"; depends=[]; }; - rtk = derive2 { name="rtk"; version="0.2.5.8"; sha256="1ybppi5h86gb324hlkx91m2kk2dw7hi5k5l2fh5h1xnlqjv55n0b"; depends=[Rcpp]; }; + rtk = derive2 { name="rtk"; version="0.2.6.1"; sha256="1xafmp5y5p8fnsh16wj8n08x69v2hawnsvsy7g4dcz1i5xkhyc0m"; depends=[Rcpp]; }; rtkore = derive2 { name="rtkore"; version="1.5.5"; sha256="0srk0ih4gbmhb1pl6zf8sjwrkdmgws9cl1397fcqv6l3bc376622"; depends=[inline Rcpp]; }; rtmpt = derive2 { name="rtmpt"; version="0.1-19"; sha256="1cpakgy0rmy27b14krmgdrf1fi0mar4k5rklnvmphivid8150gzn"; depends=[coda data_table loo matrixcalc stringr truncnorm]; }; + rtodoist = derive2 { name="rtodoist"; version="0.1.0"; sha256="12lh14ps4snlyykhc65nvn8ipic8is8ssmgcx73snmifhrzxgdyb"; depends=[digest dplyr getPass glue httr keyring magrittr purrr]; }; rtop = derive2 { name="rtop"; version="0.5-14"; sha256="1wwllckginnzisapbklpsizy47db24r83xahq4qsd8zhqvv9yj33"; depends=[gstat sp]; }; rtrek = derive2 { name="rtrek"; version="0.3.0"; sha256="0nfkmcyrb1gbgjjy62ffjlg6x93zy4s4qg6ii98gjbn0jp6pcj1j"; depends=[downloader dplyr ggplot2 jpeg jsonlite magrittr memoise purrr rvest tibble tidyr xml2]; }; rtrends = derive2 { name="rtrends"; version="0.1.0"; sha256="04xdggf36m294drb9z8khdjr6fgsg4bwkb4mmbbvqfzjpq4mq4y1"; depends=[dplyr lubridate tidyr]; }; @@ -13206,18 +13705,19 @@ in with self; { rubias = derive2 { name="rubias"; version="0.3.1"; sha256="1x7h38lsdq03cd72ffawr8mpnf1c1a16sxgmz3c52fn3b9n28jxm"; depends=[dplyr gtools magrittr Rcpp RcppParallel readr rlang stringr tibble tidyr]; }; rucm = derive2 { name="rucm"; version="0.6"; sha256="1n6axmxss08f2jf5impvyamyhpbha13lvrk7pplxl0mrrrl5g0n8"; depends=[KFAS]; }; rucrdtw = derive2 { name="rucrdtw"; version="0.1.4"; sha256="0865x8i2n63xjbq0pzalm4gd6rpg72yrcsm4rw40a3kzy2svvnlm"; depends=[Rcpp]; }; - rugarch = derive2 { name="rugarch"; version="1.4-2"; sha256="12rrxdj5am3qjg1iya6g8a3ak167dd4sqgfmpa4ims588gj5szkm"; depends=[chron expm ks nloptr numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; }; + rugarch = derive2 { name="rugarch"; version="1.4-4"; sha256="06zmii3wncxndd4hhdk7h4d4s2lj5clrrs10zzz4856g9zjzmbq6"; depends=[chron ks nloptr numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; }; ruimtehol = derive2 { name="ruimtehol"; version="0.2.3"; sha256="073qb7g9j6zkk6hxf78y7ymnmc1s4hbjxxlymjhxpvjfbg4xpslw"; depends=[BH Rcpp]; }; ruin = derive2 { name="ruin"; version="0.1.1"; sha256="124xs1c2mjfy6z0bp83rwkqw2y73g77xwn3q4yd2xw0v2frnpvpz"; depends=[ggplot2]; }; - ruler = derive2 { name="ruler"; version="0.2.2"; sha256="190yvz6hpqmcjydcjy69fr6jya3la325fpz1a5g38xhrj6a9v4kn"; depends=[dplyr keyholder rlang tibble tidyr]; }; - runes = derive2 { name="runes"; version="0.0.1"; sha256="0aq4wlxwc00a39lgfvr2pyhh7hcrb3n19mm83qvr8kyz30dhghx9"; depends=[]; }; - runittotestthat = derive2 { name="runittotestthat"; version="0.0-2"; sha256="15zdcvqkr5ivq6wk6dw8k6diginc6z7mdc18pswim90d99j2g9sm"; depends=[assertive RUnit]; }; + ruler = derive2 { name="ruler"; version="0.2.3"; sha256="0ik9cbr0nc97xady1xm6y9yvms3ckckmjkb8sxxi2in1ip6rvzw2"; depends=[dplyr keyholder rlang tibble tidyr]; }; + rules = derive2 { name="rules"; version="0.0.2"; sha256="0sj8zfarm2az9zsbr6kg6fv7q76ll5ma3n4rfncsafw1z6n22iw7"; depends=[dials dplyr parsnip purrr rlang tibble tidyr]; }; + runes = derive2 { name="runes"; version="0.1.0"; sha256="1s2vhwya434q70j4aq4qbds8wivscc5cyldr5pch7p41nqj0j7aw"; depends=[]; }; runjags = derive2 { name="runjags"; version="2.0.4-6"; sha256="0w97s1j5v05fn4nclqwg56hl9vz6vi2l6sp042r6iyh024fsyg22"; depends=[coda lattice]; }; - runner = derive2 { name="runner"; version="0.3.5"; sha256="0x73bza6dgi52f33hy94pqbbwwy1pmw8dzifrsfkz3kca2hgprzr"; depends=[Rcpp]; }; + runner = derive2 { name="runner"; version="0.3.7"; sha256="0480ndavxz9gldyvz8v9mxszfnysxf13vva2fw6qc49ikm88dry6"; depends=[Rcpp]; }; + runonce = derive2 { name="runonce"; version="0.2.2"; sha256="0zfxrz0mxsfwkfs2kzwvhi2s94imsa3pjw86f5syibwr8inwnza0"; depends=[bigassertr urltools]; }; runstats = derive2 { name="runstats"; version="1.1.0"; sha256="0n9348af60j8a2mwgbafabspb4nm45ry92zlzmynja06zyx8lb2d"; depends=[fftwtools]; }; rusda = derive2 { name="rusda"; version="1.0.8"; sha256="0xx72jjf1pyixwpnvvgx5n2vc5gl46bam1caav043iqki68wb338"; depends=[foreach httr plyr RCurl stringr taxize testthat XML]; }; rusk = derive2 { name="rusk"; version="0.1.1"; sha256="0a6vbcnfzlfq9fmibiy0cwcfix65qhxq4f7wc7d53riga82s00lk"; depends=[dplyr ggforce ggplot2 reshape2 shiny tidyr]; }; - rust = derive2 { name="rust"; version="1.3.8"; sha256="05xqvbkjckwxmhgcl9dqb7y20jq8b6f2fad5dikvbq5l8pwfygxj"; depends=[Rcpp RcppArmadillo]; }; + rust = derive2 { name="rust"; version="1.3.9"; sha256="1p81gm6jj2ancx2xbfag4hw5hf4vqbsx2rn3rqcxb4213n1c5f0s"; depends=[Rcpp RcppArmadillo]; }; ruta = derive2 { name="ruta"; version="1.1.0"; sha256="1qr2ryz55h2j3wlwg0535lhmk2ydm0idfxl07rlfxq1pi32cjms1"; depends=[keras purrr R_utils]; }; rutifier = derive2 { name="rutifier"; version="1.0.4"; sha256="045pr8apd105azs1glpwqrbamglqddxfpml9yrfrlaivz3fjd9l8"; depends=[R_utils]; }; ruv = derive2 { name="ruv"; version="0.9.7.1"; sha256="1n4q9mrp9f644spbns6bbnzmlabrg90hwkdfg3hnm3rxp9b4xid0"; depends=[ggplot2 gridExtra scales]; }; @@ -13226,14 +13726,16 @@ in with self; { rvTDT = derive2 { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; }; rvalues = derive2 { name="rvalues"; version="0.6.3"; sha256="1bsdvwcijb75f27c8padjx8663as667axc4skwa6xgv5y423kbd0"; depends=[]; }; rvcheck = derive2 { name="rvcheck"; version="0.1.8"; sha256="0627bc8qmhxmd63yh6f90qni3qw1zwdpxjln2qbychzmzd4am9ac"; depends=[BiocManager rlang]; }; - rversions = derive2 { name="rversions"; version="2.0.1"; sha256="1ic6sxnyya24d5xsxjg3fba73fhya9fhs0kaf66yha6nwxj1zv2i"; depends=[curl xml2]; }; + rversions = derive2 { name="rversions"; version="2.0.2"; sha256="0ghpla5r3d6zh5dn6d6ii5p0a952lcdv004m88fk8r9k76vz88rm"; depends=[curl xml2]; }; rvertnet = derive2 { name="rvertnet"; version="0.8.0"; sha256="1j8kgyzcn14yl44lnxc8f83wpmgpdzx5aiw91zjbjkajj6bgzrpn"; depends=[crul dplyr ggplot2 jsonlite maps]; }; - rvest = derive2 { name="rvest"; version="0.3.5"; sha256="0r0a5jic09xw5pk0x42pr99r3zab5m9s4x85ymx1sl769jz42zqf"; depends=[httr magrittr selectr xml2]; }; - rvg = derive2 { name="rvg"; version="0.2.4"; sha256="12ghjppq5igic2mw8k3p5cnywm26c615ll3j3a9fasyyzkxx6i05"; depends=[gdtools officer Rcpp rlang xml2]; }; + rvest = derive2 { name="rvest"; version="0.3.6"; sha256="1yh2p429a0zr8pqmlw5rzf6m797j20j5w6xwxlqq0wrdbnif6bka"; depends=[httr magrittr selectr xml2]; }; + rvg = derive2 { name="rvg"; version="0.2.5"; sha256="1i0alsr9ahl54gwszvaqz5qgiqs85wwzs5d31z97x315sk3n994j"; depends=[gdtools officer Rcpp rlang xml2]; }; rvgtest = derive2 { name="rvgtest"; version="0.7.4"; sha256="1lhha5nh8fk42pckg4ziha8sa6g20m0l4p078pjj51kz0k8929ng"; depends=[]; }; - rvinecopulib = derive2 { name="rvinecopulib"; version="0.5.1.1.0"; sha256="1616xqchjyqqf2nmgx5rlpnw8g4696lvlpmrx7jav2cnvkff7s2i"; depends=[assertthat BH kde1d lattice Rcpp RcppEigen RcppThread wdm]; }; + rviewgraph = derive2 { name="rviewgraph"; version="1.3.1"; sha256="1jv6ldvzi1av093nqbdivhm0l0q7j1ipmvi486zcbsnwrcj15m91"; depends=[rJava]; }; + rvinecopulib = derive2 { name="rvinecopulib"; version="0.5.3.1.0"; sha256="1pf2avxq2l8nd6vgp0b8xxy76ii0a3i6gdl895x8dgd6y5mi0z33"; depends=[assertthat BH kde1d lattice Rcpp RcppEigen RcppThread wdm]; }; rvkstat = derive2 { name="rvkstat"; version="2.6.3"; sha256="0vh5gsvfs01f7mw0cl1wap1w1nsgr4fyv9fdays8b8ad3gc17a2r"; depends=[httr jsonlite RCurl tidyr]; }; - rwalkr = derive2 { name="rwalkr"; version="0.5.2"; sha256="1661vg5mdizgynlniq6pibmhn0spnh3d4w6bh08nyjwwchkagrxi"; depends=[dplyr hms httr tidyr]; }; + rvmethod = derive2 { name="rvmethod"; version="0.1.2"; sha256="1g2d5pvz5s1sj2kalxaz7nb8874m4113ly809zbimngi1lhg8zi1"; depends=[assertthat locfit]; }; + rwalkr = derive2 { name="rwalkr"; version="0.5.3"; sha256="156834rfqmlb3ibwg9ys11276zhhqghazrpnv82pvd83gn48f3vq"; depends=[dplyr hms httr tidyr]; }; rwavelet = derive2 { name="rwavelet"; version="0.4.0"; sha256="0wb3kd97inyh985q1hspnzwxfawfdps43r3zzdpw0jd8sgd7zqxp"; depends=[signal]; }; rwc = derive2 { name="rwc"; version="1.11"; sha256="1qhgkbkp4nz0wq5c4x8232xiszpiyzcdklfgvpnx4cbp3bbfdi4g"; depends=[MASS Matrix mvtnorm raster]; }; rwebstat = derive2 { name="rwebstat"; version="1.1.0"; sha256="106dkhlr33ii17q45c1hrmbslwsj1qlmx325skch2q71mv7ii0lj"; depends=[dplyr getPass htmltools httr jsonlite readr stringr]; }; @@ -13247,13 +13749,12 @@ in with self; { rwunderground = derive2 { name="rwunderground"; version="0.1.8"; sha256="02p26gkicd5v511kb04p1h3wxj57r7j5vr97n3ibywc6ivz7nqxa"; depends=[countrycode dplyr httr lubridate tibble]; }; rxSeq = derive2 { name="rxSeq"; version="0.99.3"; sha256="0g0n2pzbssz61psghjp1vrlspgph4s39x1k1zhcz7ivdn5pjb2nx"; depends=[MASS numDeriv VGAM]; }; rxylib = derive2 { name="rxylib"; version="0.2.4"; sha256="0va7kw40nycjn8gh9blzpbph4z319r5a16yim8lwx3hi6rs9myhr"; depends=[BH Rcpp]; }; - ryandexdirect = derive2 { name="ryandexdirect"; version="3.2.2"; sha256="0ga6kx4mpd1dw6b8nbnmc7cly7kcmkplldgdy6jaiz3jmsiy2vgn"; depends=[bitops data_table dplyr httr jsonlite magrittr readr xml2]; }; - rym = derive2 { name="rym"; version="0.5.4"; sha256="1lsxzb6j5bxcrk8dv6wvvbjcfpb6zp9afbdyp0lzm348z953f44z"; depends=[httr stringr]; }; + ryandexdirect = derive2 { name="ryandexdirect"; version="3.6.0"; sha256="0f1z8gp1pxfqx694alj435ihzxvd9ban04b1clzipgdq9la1hza8"; depends=[bitops data_table dplyr httr jsonlite magrittr purrr readr stringr tidyr xml2]; }; + rym = derive2 { name="rym"; version="1.0.3"; sha256="0sxi9a4rx78kxcfvsmyzr138fhzb19pwvj29ryijlsfl7n2h4h16"; depends=[httr purrr stringr]; }; ryouready = derive2 { name="ryouready"; version="0.4"; sha256="1d9z3paxcrkwsgn5g83x57jwz2iqarks30x0bwg48i5ispw6xbr3"; depends=[car ggplot2 stringr]; }; rysgran = derive2 { name="rysgran"; version="2.1.0"; sha256="1l2mx297iyipap8cw2wcw5gm7jq4076bf4gvgvij4q35vp62m85z"; depends=[lattice soiltexture]; }; - rzeit2 = derive2 { name="rzeit2"; version="0.2.3"; sha256="0fvkpc6l57s64m0zx8fzazvyhpn5wxa1cb185h20x8hjf069i5lf"; depends=[anytime httr jsonlite openssl rvest stringr xml2]; }; rzmq = derive2 { name="rzmq"; version="0.9.7"; sha256="0iasjaka3gx616l5bxyg2k0fi33hldaplvs0h03j6jpxfmxvcisz"; depends=[]; }; - s2 = derive2 { name="s2"; version="0.4-2"; sha256="17r3xn2ldlz7qpdwrp0mdm7pfrdfwibyv8biaxq4b6qx0p7wvw6n"; depends=[Rcpp]; }; + s2 = derive2 { name="s2"; version="1.0.2"; sha256="0z4cg61l1b90z7dcbbl6a4ja3zfmgkfvdg456y02gg5aqw5qqcd6"; depends=[Rcpp wk]; }; s20x = derive2 { name="s20x"; version="3.1-28"; sha256="1fx5206gy7cq4n0xrdxcvnd913i08yjjz39ldjm3a98sfz6xj636"; depends=[]; }; s2dv = derive2 { name="s2dv"; version="0.0.1"; sha256="06jn9f8fpkpi1qz0g7pjyszdwckg6llb2lnf0micj8v1js7phym8"; depends=[abind bigmemory ClimProjDiags GEOmap geomapdata mapproj maps multiApply ncdf4 plyr]; }; s2dverification = derive2 { name="s2dverification"; version="2.8.6"; sha256="1nvmc3mpdqrcnv17vk8rjd7mh55pj68y2ffiia09lc8h84r3zxil"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; @@ -13274,23 +13775,26 @@ in with self; { sabre = derive2 { name="sabre"; version="0.3.2"; sha256="14rvc8in8lfs9vg96jkqm3xg7bszwss5zd78vngp36x4yay007b6"; depends=[dplyr entropy raster rlang sf tibble tidyr]; }; sac = derive2 { name="sac"; version="1.0.1"; sha256="1rl5ayhg5y84fw9w3zf43dijjlw9x0g0w2z4haw5xmxfni72ms8w"; depends=[]; }; saccades = derive2 { name="saccades"; version="0.1-1"; sha256="138a6g3hjmcyvflpxx1lhgxnb8svrynplrjnvzij7c4bzkp8zip6"; depends=[zoom]; }; - sadists = derive2 { name="sadists"; version="0.2.3"; sha256="17jlzx5h5l1w7riz0rs99w31n6lxnnxwzbzqn2z5r292j2nxvmkw"; depends=[hypergeo orthopolynom PDQutils]; }; + sadists = derive2 { name="sadists"; version="0.2.4"; sha256="00iqgwqfia4mybg4v66kb368gydr103zmr8ka9y4j8rmwkg5j9kq"; depends=[hypergeo orthopolynom PDQutils]; }; sads = derive2 { name="sads"; version="0.4.2"; sha256="1j6vdjvpnbqp4kwbvhcl8p51ln29mmk9n150718wsqlifb8d1lw9"; depends=[bbmle GUILDS MASS poilog VGAM]; }; sae = derive2 { name="sae"; version="1.3"; sha256="1ncrlzgnga9pfa2j8x1y6axl2665rp08aff98zrim6gq6n6yap8z"; depends=[lme4 MASS]; }; saeME = derive2 { name="saeME"; version="1.0.1"; sha256="1w77ncha9xs5p3pzfd3y38q8kz2wjzh35zyn4cby0yp2cyw4xxd9"; depends=[expm MASS]; }; saeRobust = derive2 { name="saeRobust"; version="0.2.0"; sha256="1bdfrsm59xwkga0kxl3r5n83mhhkyzj7gplrgx26gyflashyd1zc"; depends=[aoos assertthat ggplot2 magrittr MASS Matrix memoise modules pbapply Rcpp RcppArmadillo spdep]; }; saeSim = derive2 { name="saeSim"; version="0.10.0"; sha256="0nh8x2v0g8i0rjq4s5q0ayhyxhl5p0126plmd4vnnhaifm6pn0q3"; depends=[dplyr functional ggplot2 MASS parallelMap spdep]; }; + saeeb = derive2 { name="saeeb"; version="0.1.0"; sha256="04vjxmnqcgqcamgjd9qq1dbx0msm40mnn94jjy9pzvsj2gsbws39"; depends=[COUNT MASS]; }; saemix = derive2 { name="saemix"; version="2.3"; sha256="08n1syv8wkf1nqz8i1n3ippyp63g56xf8xqgczxm630r6802yqab"; depends=[]; }; saery = derive2 { name="saery"; version="1.0"; sha256="09x1v627llqbpiwkh1wr0z7gsndfdrjzag2hprhq1adbzh05k47z"; depends=[]; }; safeBinaryRegression = derive2 { name="safeBinaryRegression"; version="0.1-3"; sha256="1g68r6pp5l41rbgyfqgcha1gpsisnl0ybdmdqr4ylr43f61dpgvd"; depends=[lpSolveAPI]; }; + safedata = derive2 { name="safedata"; version="1.0.7"; sha256="0f7wbcghi35fr85gl5qsbpbri0w50kv8axx65cmamqzfkmp0mfr0"; depends=[chron curl igraph jsonlite readxl sf]; }; safer = derive2 { name="safer"; version="0.2.1"; sha256="1lmhaj9y0hi4ybxfkllxl99vsagcg73sy4kkcmlvn3bs69jky1r9"; depends=[assertthat base64enc sodium]; }; safetyGraphics = derive2 { name="safetyGraphics"; version="1.1.0"; sha256="1s8xwx014nihn13v6rpwy11sb3yzfyj3alb88y47wp1kh39d7f0q"; depends=[dplyr DT haven htmlwidgets jsonlite magrittr purrr rlang rmarkdown shiny shinybusy shinyjs shinyWidgets stringr tibble tidyr]; }; sail = derive2 { name="sail"; version="0.1.0"; sha256="1wrh2dam5lblascqd8gl76jks72ys1amz84c6p08y8ykdmn2saq1"; depends=[gglasso glmnet]; }; - salesforcer = derive2 { name="salesforcer"; version="0.1.3"; sha256="1nhw7l6bg375dqqcaxjfvhjm9sb1jsil5wayhffdxc9lqdxrd5a2"; depends=[data_table dplyr httr jsonlite lubridate purrr readr XML xml2]; }; + salesforcer = derive2 { name="salesforcer"; version="0.2.0"; sha256="154xyh04ldyz2l20v48ww5j965ylm55g1m8jsh6726ni1zp6x7kk"; depends=[base64enc curl dplyr httr jsonlite lifecycle lubridate mime purrr readr rlang rlist tibble vctrs XML xml2 zip]; }; salso = derive2 { name="salso"; version="0.1.16"; sha256="1xvzvy0s1718n9p71a6gb4dzg281drzzmpyda5j3b729aijni6bh"; depends=[]; }; salty = derive2 { name="salty"; version="0.1.0"; sha256="1dxq62yrkv416fy09l03slc7ci6mnwiyvjlsxhbqnj8yjy3kbhr6"; depends=[assertthat purrr stringr]; }; sambia = derive2 { name="sambia"; version="0.1.0"; sha256="15yz5lrjav5bs8m52crg3l43xmi4gf7wydji76p181ssyg43z2ln"; depends=[dplyr e1071 FNN mvtnorm pROC ranger smotefamily]; }; - samc = derive2 { name="samc"; version="1.0.4"; sha256="03n49p2cjs1r3grmg4cw4pxn4lddx5084j4j8dj0g6l9sjzj64hz"; depends=[gdistance Matrix raster Rcpp RcppEigen]; }; + samc = derive2 { name="samc"; version="1.1.0"; sha256="124mbbhq9ypn1jxyqsx7i6lkzr8qxq5qz0fn3i5gk4aax1l5f92l"; depends=[gdistance Matrix raster Rcpp RcppEigen]; }; + samon = derive2 { name="samon"; version="4.0.1"; sha256="1zhnv7kdpd2zhp6il5x56v4yh5703n1nsnkrysygns4i7xhvcf6z"; depends=[]; }; sampSurf = derive2 { name="sampSurf"; version="0.7-5"; sha256="0ks95d1w5dvxz4vb850hb5v0w8xg6sil0gvddmd1mrrjkjqkk96f"; depends=[boot lattice latticeExtra raster rasterVis sp]; }; sampleSelection = derive2 { name="sampleSelection"; version="1.2-6"; sha256="1ph26v78sy8341d9iir6243vmvnrnan7gj5mr31913kpgkblcwfj"; depends=[Formula maxLik miscTools mvtnorm systemfit VGAM]; }; sampler = derive2 { name="sampler"; version="0.2.4"; sha256="12jjx3ci1yss8dj64bjdmz73cyjfkwb7b9zk4zm48lqv78k6wlv7"; depends=[dplyr purrr reshape tidyr]; }; @@ -13305,24 +13809,25 @@ in with self; { samplingbook = derive2 { name="samplingbook"; version="1.2.2"; sha256="1szx9bdlxxn2yhy9i362fcscn5cydvrkw9kggr7yqb715k5n1j6n"; depends=[pps sampling survey]; }; samr = derive2 { name="samr"; version="3.0"; sha256="01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"; depends=[GSA impute matrixStats openxlsx shiny shinyFiles]; }; samurais = derive2 { name="samurais"; version="0.1.0"; sha256="0s00hd3ax4r662n8iqmd9i56sgyjxbgc59la7qvh3jwcnzcvmgz9"; depends=[MASS Rcpp RcppArmadillo]; }; - sand = derive2 { name="sand"; version="1.0.3"; sha256="0h7djria9v75gqcygjcfznpchqgxjqc6b43arvq9ni1xjrq8sszf"; depends=[igraph igraphdata]; }; + sand = derive2 { name="sand"; version="2.0.0"; sha256="0a8skj1wi1n9zlm7jb5cix1i4ssdzfpj4ym2854ala9jy6qj7g7n"; depends=[igraph igraphdata]; }; sandwich = derive2 { name="sandwich"; version="2.5-1"; sha256="1mk685b9wq7k566pbml52rj96i5h6b3vf215k9picgmq296nzvyv"; depends=[zoo]; }; sanitizers = derive2 { name="sanitizers"; version="0.1.0"; sha256="1c1831fnv1nzpq8nw9krgf9fm8v54w0gvcn4443b6jghnnbhn2n6"; depends=[]; }; sanityTracker = derive2 { name="sanityTracker"; version="0.1.0"; sha256="0y041x840sg5c05ksljb1y4xag1cib19q5ygp443k13ryfbcgs9k"; depends=[checkmate data_table]; }; sankey = derive2 { name="sankey"; version="1.0.2"; sha256="0jvcr2bn69aklfbgj4hbsrc047mymrx0jmsg26m0g6w7n1igqvcw"; depends=[simplegraph]; }; sankeywheel = derive2 { name="sankeywheel"; version="0.1.0"; sha256="1sigj4jz13qj4s8vxk0dl2xsddqgyfxabj8yggkasawm7pryvbyy"; depends=[htmlwidgets]; }; + sanon = derive2 { name="sanon"; version="1.6"; sha256="0h3l1dzgkddvb3vzg7pcgwrgidphy73jys2h49v84nbfvqr6l85z"; depends=[]; }; santaR = derive2 { name="santaR"; version="1.0"; sha256="10g4z951mpxw9d21s5f6zwfch5xs9vx812fb0wyrbw9s8drmlbkh"; depends=[doParallel foreach ggplot2 gridExtra iterators pcaMethods plyr reshape2 shiny shinythemes]; }; - santoku = derive2 { name="santoku"; version="0.3.0"; sha256="019wdskp1i9y7z858mwhx5k2r3zk3wq52g9fwmf66dydlf6l1yky"; depends=[assertthat Rcpp]; }; + santoku = derive2 { name="santoku"; version="0.4.1"; sha256="1szcnxy4q8yp06mb72cy40fqdn9pvi07wnfa6z3p9z32zxn6mq1k"; depends=[assertthat lifecycle Rcpp vctrs]; }; sanzo = derive2 { name="sanzo"; version="0.1.0"; sha256="1fqsx2mgjsy6vjvsp2avi2i5cw7cjs2p53l1z6hb3bzid3067s87"; depends=[]; }; - saotd = derive2 { name="saotd"; version="0.2.0"; sha256="1rhkhsnmh3nf7y0x5sl3mmr5mismz8m92gj0v12niysalcywiarh"; depends=[dplyr ggplot2 ggraph igraph ldatuning lubridate magrittr maps plyr purrr reshape2 scales stringr tidyr tidytext topicmodels twitteR widyr]; }; - sapa = derive2 { name="sapa"; version="2.0-2"; sha256="056xlh14dnzq4x7sbp7ff2k61jxy7110a742b502vz549qfrr5ds"; depends=[ifultools splus2R]; }; - sapfluxnetr = derive2 { name="sapfluxnetr"; version="0.0.7"; sha256="0lnhg4apsvvyzyz89x778nhxjp4y0mycgajxjyb57wcwgn16gygm"; depends=[assertthat dplyr furrr ggplot2 glue lubridate magrittr purrr rlang stringr tibble tidyr]; }; - saqgetr = derive2 { name="saqgetr"; version="0.1.19"; sha256="0sl0kngcsadgnx1lwhgbn9w4885dv0ih3c5vkvmz0bkvhdcjih9j"; depends=[curl dplyr fs lubridate magrittr purrr readr stringr tidyr]; }; + sapfluxnetr = derive2 { name="sapfluxnetr"; version="0.1.0"; sha256="1alcqndj7sd4c70qzixcwaw8yrl40arp8765845wxr7bamw1j8g5"; depends=[assertthat dplyr furrr ggplot2 glue lubridate magrittr purrr rlang stringr tibble tidyr]; }; + saqgetr = derive2 { name="saqgetr"; version="0.2.0"; sha256="126wr1if6mqs1m17amjhx7iq5ypgdgphgl9rcb9iia29krlfcq00"; depends=[curl dplyr fs lubridate magrittr purrr readr stringr tidyr]; }; sara4r = derive2 { name="sara4r"; version="0.0.7"; sha256="1la02rq16c3hvfg4dygz6himvs88nmry8616fzgnsbxzpddl5aw3"; depends=[raster rgdal RGtk2 sp]; }; sarima = derive2 { name="sarima"; version="0.8.2"; sha256="0fyfba017p35g16b8xp9zvqp9dalhlgr7x5hpk10y29qh7k12z69"; depends=[dplyr FitAR FitARMA FKF Formula KFAS lagged ltsa numDeriv PolynomF Rcpp RcppArmadillo Rdpack]; }; - sars = derive2 { name="sars"; version="1.2.1"; sha256="10j2cz66qpdicarxy2mx2hlmkvby3j83qrjm2irmfnwmscafg5f4"; depends=[cli crayon dplyr nortest numDeriv]; }; + sarp_snowprofile = derive2 { name="sarp.snowprofile"; version="1.0.0"; sha256="02g7d5kilfkhqxm02jkhkraqbamxaj1qzzi150k6m55d5bfy4wih"; depends=[data_table xml2]; }; + sars = derive2 { name="sars"; version="1.2.3"; sha256="04dllvmwgmd06f8p99vhw8svgymc7v8n1dg13xzxmm8bpi1ww1ys"; depends=[cli crayon dplyr nortest numDeriv]; }; + sarsop = derive2 { name="sarsop"; version="0.6.5"; sha256="1jvxx8l352slwaj6sn2344ivss27cvwnvc6k8i9dd7zmy1z85qn7"; depends=[BH digest Matrix processx xml2]; }; sas7bdat = derive2 { name="sas7bdat"; version="0.5"; sha256="0qxlapb6wdhzpwlmzlhscy3av7va3h6gkzsppn4sx5q960310an3"; depends=[]; }; - sasLM = derive2 { name="sasLM"; version="0.1.2"; sha256="0d7vklzqsdfg7rg8d3186ka0iqggyhksj0xlzd3rdm8wjd6h5839"; depends=[]; }; + sasLM = derive2 { name="sasLM"; version="0.1.4"; sha256="07gpcw77hp80i1rvz8pf5npib447zywigqx7df7i7r1w0vjzz0nc"; depends=[]; }; sasMap = derive2 { name="sasMap"; version="1.0.0"; sha256="11vhhxhakqm1gsb3p4s4966sapmrqfyw79zfppbx5lnqi3xr0ngn"; depends=[readr stringi stringr]; }; sass = derive2 { name="sass"; version="0.2.0"; sha256="0qzrncsnp0zd8jyp4whss92m7llqsfccmp9p9r3gdc7hlq1amp3z"; depends=[digest fs htmltools rlang]; }; sate = derive2 { name="sate"; version="1.1.0"; sha256="0d1b0gp5abh5g7a25ff40xdnncrl2afjnlcc56dbhqkk43gjah17"; depends=[MASS]; }; @@ -13332,29 +13837,33 @@ in with self; { saves = derive2 { name="saves"; version="0.5"; sha256="1b4mfi2851bwcp0frx079h5yl6y1bhc2s8ziigmr8kwy1y1cxw10"; depends=[]; }; saws = derive2 { name="saws"; version="0.9-6.2"; sha256="1ikvky45inz65djv1c9v749a5lq4m0xlzhm4p12am25qyv08hgjz"; depends=[gee]; }; sazedR = derive2 { name="sazedR"; version="2.0.1"; sha256="1y8vlffvw7ff6j6pqwd0r2zxx1an846znajgcl8mdcbjimvf7fg5"; depends=[bspec dplyr fftwtools pracma zoo]; }; - sbfc = derive2 { name="sbfc"; version="1.0.1"; sha256="1xz8h1m5d5ahrz4wsy55amd5mxh3acjs5qmcn7gl6yh3pn0c8phf"; depends=[DiagrammeR discretization Matrix Rcpp RcppArmadillo]; }; + sbfc = derive2 { name="sbfc"; version="1.0.2"; sha256="1bwwy4yw8wfvmisiqwswd78dy4bjgmhcv0aki1x2sslzazmdy23y"; depends=[DiagrammeR discretization Matrix Rcpp RcppArmadillo]; }; sbgcop = derive2 { name="sbgcop"; version="0.980"; sha256="0vmg8b4462qghlyx6hq0raf9xqvygzgwi5y0cbqcljhmbmqjrwxs"; depends=[]; }; sbioPN = derive2 { name="sbioPN"; version="1.1.0"; sha256="0yvg55xnkhm35hfl7rldy2grb26hm4a68jr4x9n45fs7hhdylxri"; depends=[]; }; sbl = derive2 { name="sbl"; version="0.1.0"; sha256="1wxzscii0kp55sngmjccrqvc8zm1zamfh406r12irrz2wbxwqnkw"; depends=[]; }; + sbm = derive2 { name="sbm"; version="0.2.1"; sha256="0x79gpl703icn7cd11z39f23kmk87ny47a5i24s7p3bm342s5mhg"; depends=[blockmodels ggplot2 magrittr R6 Rcpp RcppArmadillo]; }; sbmSDP = derive2 { name="sbmSDP"; version="0.2"; sha256="1sl46lqi6w0s7ghv4bywhic56cm2vib3kawprga760m6igargx4y"; depends=[Rcpp RcppArmadillo]; }; sboost = derive2 { name="sboost"; version="0.1.1"; sha256="126rqvpqwvwjxvsg1v04nkmd6af55j7sgx43jg2vnggyrlli9j9q"; depends=[dplyr Rcpp rlang]; }; sbpiper = derive2 { name="sbpiper"; version="1.9.0"; sha256="0pjq88ixk494wlz4nh5anbsn59mmh9wg564qh3vzwwqgxf1k61cg"; depends=[colorRamps data_table factoextra FactoMineR ggplot2 Hmisc reshape2 scales stringr]; }; sbtools = derive2 { name="sbtools"; version="1.1.11"; sha256="06b27cxrfqps0lfgjcwxcal36dkf05y2lcmwrzjrm333zgnvcy6g"; depends=[curl httr jsonlite stringr]; }; - sbw = derive2 { name="sbw"; version="1.0"; sha256="07lr2sh681q0wvyaf7ixif5riw9kfxv4hraxj8hzqaxcsip743vq"; depends=[MASS Matrix quadprog slam spatstat]; }; - scBio = derive2 { name="scBio"; version="0.1.5"; sha256="12wch9dp7n9vigv7rp7i5b5sckn9vvckpclylinnbi1mhawxprv9"; depends=[doSNOW fields foreach LiblineaR limma raster sp]; }; - scMappR = derive2 { name="scMappR"; version="0.1.1"; sha256="1mfbjv7gpj63q5gwqcajjrnbhr918nvl41hk8ggk1l30wqg4k4r1"; depends=[downloader ggplot2 gProfileR gprofiler2 GSVA limSolve pcaMethods pheatmap Seurat]; }; + sbw = derive2 { name="sbw"; version="1.1.1"; sha256="1wlyhqwb07bb3g2ar16wk1wv541m7v4hfyncxgqd0fxsnb955pi8"; depends=[MASS Matrix quadprog slam spatstat]; }; + scBio = derive2 { name="scBio"; version="0.1.6"; sha256="1bpizxm9fbxd4sfapi1ayfg5csacb4dvqbvappd79jkq4mrsk12q"; depends=[doSNOW fields foreach LiblineaR limma raster sp]; }; + scDIFtest = derive2 { name="scDIFtest"; version="0.1.1"; sha256="1hq68g7zf7372cach2qfc7l1l8gh5aqkp66k0cxjnrhmvvb1qcax"; depends=[mirt sandwich strucchange zoo]; }; + scMappR = derive2 { name="scMappR"; version="0.1.3"; sha256="0rnpl6l4cipsx93swkci8pv59f9pwy4p596hg59vj6v57d5xga7s"; depends=[downloader ggplot2 gProfileR gprofiler2 GSVA limSolve pbapply pcaMethods pheatmap Seurat]; }; scModels = derive2 { name="scModels"; version="1.0.1"; sha256="0n2sc2l3wy08i0xq7jwigkr42wz9gyhlirmjmma9plnmkbrx0rp4"; depends=[Rcpp]; }; scPDSI = derive2 { name="scPDSI"; version="0.1.3"; sha256="00z5qk14c1ndrd63rhvknkp3dn3ad8z8mf00p9sb8wbsi908md44"; depends=[Rcpp]; }; scRNAtools = derive2 { name="scRNAtools"; version="1.0"; sha256="0x0lniqhq6q87y08kkkyvmk1g5b8i73hm3h86ba8rcv0v0n7ap9a"; depends=[ALL ConsensusClusterPlus corrplot edgeR foreach ggplot2 ggthemes Hmisc igraph lattice limma PerformanceAnalytics plyr reshape2 Rmisc Rtsne scatterplot3d survival TPEA]; }; - scTenifoldNet = derive2 { name="scTenifoldNet"; version="1.2.1"; sha256="091fczz5vjj8cq53dik229vrscsj68p6vpaqr8gdknjgc9nsc1ka"; depends=[MASS Matrix pbapply RSpectra]; }; + scTenifoldNet = derive2 { name="scTenifoldNet"; version="1.2.2"; sha256="0shs8m98szr97s30byv4drd11nm3102s76yn501f9a91v0clp6wl"; depends=[MASS Matrix pbapply RSpectra]; }; + scUtils = derive2 { name="scUtils"; version="0.1.0"; sha256="09c4vwrjj4r0nfcwb8q0a243m0v5wa3qisdlcy7ik58gyxp02zv8"; depends=[assertthat dplyr ggplot2 Matrix scales viridis viridisLite]; }; scaRabee = derive2 { name="scaRabee"; version="1.1-3"; sha256="1yap3hi36f8hk93jn59nxrbgq8iw0xwkkm3pc2gb50cpcpaq41pd"; depends=[deSolve lattice neldermead]; }; scaffolder = derive2 { name="scaffolder"; version="0.0.1"; sha256="1va1mlhqv5qn0hm81ypdir9llr68222qxjp3jink69zpaskfbdib"; depends=[reticulate]; }; scagnostics = derive2 { name="scagnostics"; version="0.2-4.1"; sha256="1azg1xlid63l9mcyns9yyl3a3hykbl0sl0h5jhyvzjzahfyanq53"; depends=[rJava]; }; + scaleAlign = derive2 { name="scaleAlign"; version="1.0.0.0"; sha256="0340biwz0md6sxq5iq5wiz6q8kcrll80429f1ab9zz88k3fya2s6"; depends=[]; }; scaleboot = derive2 { name="scaleboot"; version="1.0-1"; sha256="1q0bs5f1vgja5gj3id1ny6raja8ljgd8dk50fs1wn90f6080afy7"; depends=[mvtnorm pvclust]; }; - scales = derive2 { name="scales"; version="1.1.0"; sha256="00rdbfj5mwc3kr8pskidn3n2zkp4ms6cx36xazz54pxw3pysdr0y"; depends=[farver labeling lifecycle munsell R6 RColorBrewer viridisLite]; }; + scales = derive2 { name="scales"; version="1.1.1"; sha256="019ps0njjc0rzrjygqiyn8b9vp0c3c0jd56h1yi19wzi49jvdcj0"; depends=[farver labeling lifecycle munsell R6 RColorBrewer viridisLite]; }; scalpel = derive2 { name="scalpel"; version="1.0.2"; sha256="1rwa1h24b0bzsiasjgj84rd5k5wpw6pnp463qaj624sra9wp9pw9"; depends=[gam igraph Matrix protoclust R_matlab]; }; scalreg = derive2 { name="scalreg"; version="1.0.1"; sha256="0kfcgl9cpp6g1qx23s1yrjzn0hi74vmrw567vy9wpsmhk04a5bkx"; depends=[lars]; }; - scam = derive2 { name="scam"; version="1.2-5"; sha256="0c8pp2cr3khaibpv3m8kkw73q2pdx6931kh8w64s38wgvjv293fp"; depends=[Matrix mgcv]; }; + scam = derive2 { name="scam"; version="1.2-6"; sha256="1b57w583dx1dl437yrzap257kyfa5zipc4n57rbfn2laraqjw7dh"; depends=[Matrix mgcv]; }; scan = derive2 { name="scan"; version="0.40"; sha256="1khmg05dzs1va66bm26wxx440nlkl0r70wbh814fdlmij3py7m54"; depends=[car kableExtra knitr MASS mblm nlme readxl]; }; scanstatistics = derive2 { name="scanstatistics"; version="1.0.1"; sha256="147fhq34vqkq50bw0g3a112048s5jaxxcwm3iv5wykp8zl45msmz"; depends=[dplyr emdbook ismev magrittr plyr purrr Rcpp RcppArmadillo reliaR sets tibble tidyr]; }; scape = derive2 { name="scape"; version="2.3-2"; sha256="1i3k37r7lisrj1pblni5xn76kf6py52s4yd51fm78c3286yfaasf"; depends=[coda Hmisc lattice]; }; @@ -13370,31 +13879,31 @@ in with self; { scdensity = derive2 { name="scdensity"; version="1.0.2"; sha256="173xm3bf8vxl30zk4n451al7m003byg9q4d1l1pfyfa4xnv8qdg9"; depends=[lpSolve quadprog]; }; scdhlm = derive2 { name="scdhlm"; version="0.3.2"; sha256="1im2z8bfslvrk3y8hqk4snf42fb2iw6yh6nrhijih8qx3jmpwlmb"; depends=[nlme]; }; scenario = derive2 { name="scenario"; version="1.0"; sha256="0v1b00kiny21yx4qkk2x51cy1zqibdnd68z76qia7h5py28yhxsi"; depends=[]; }; - scgwr = derive2 { name="scgwr"; version="0.1.0"; sha256="1pyq6qnfhnzbkla1yp49sfkx5y4g26ccgi803axivyjyp5zvwc1b"; depends=[dplyr FNN spData]; }; + scgwr = derive2 { name="scgwr"; version="0.1.2-1"; sha256="1dv6lsdpv6gdgjkww3ljqqkwdy9ir82dzwiqrclbfp9vlzay4ybf"; depends=[dplyr FNN optimParallel spData]; }; schoRsch = derive2 { name="schoRsch"; version="1.7"; sha256="19h721v4a7rb1dlkbpb9s24x87fvz3q449ndi0rn0yc0m6mhmcvi"; depends=[]; }; schoenberg = derive2 { name="schoenberg"; version="2.0.2"; sha256="17pbw9266r9lv9blygmvq9285kcrcy07jaqrj3zfa2pg0zyvhjvm"; depends=[crayon]; }; scholar = derive2 { name="scholar"; version="0.1.7"; sha256="142iwrips1589fa0g1178a6s1cz4dfcv9b0qs570q6b6ccfjxi6r"; depends=[dplyr ggplot2 ggraph httr R_cache rvest stringr tidygraph xml2]; }; schoolmath = derive2 { name="schoolmath"; version="0.4"; sha256="06gcmm294d0bs5whvknrq48sk7li961lzy4bcncjg052zbbpn67x"; depends=[]; }; - schrute = derive2 { name="schrute"; version="0.2.1"; sha256="0dyn4lwbx5mhhl1kk3iashz81n4mgwmdd0cnzf219s8rjq5jwxbk"; depends=[dplyr ggplot2 magrittr stringi stringr tibble tidyr tidytext]; }; + schrute = derive2 { name="schrute"; version="0.2.2"; sha256="1j1bb7inhxq355kvqmp45zgxz41d3rpbh2rxk9wkahsbiy0cdybn"; depends=[dplyr ggplot2 magrittr stringi stringr tibble tidyr tidytext]; }; schumaker = derive2 { name="schumaker"; version="1.2"; sha256="1whfmnjmib7lh72src7cnbw3mswzaxq8vd50x5x9cv0031n0y6l7"; depends=[]; }; - scico = derive2 { name="scico"; version="1.1.0"; sha256="0c52a4mhsd9y5vhz3h6f7j2fa5cq0lkks5qa449w6kra5cqpbx34"; depends=[]; }; - scidb = derive2 { name="scidb"; version="2.0.0"; sha256="079akdsxxjnca5jsv0grw1c2nd3dl368xhy4mzm94mh5j6ghi57l"; depends=[bit64 curl data_table digest openssl]; }; + scico = derive2 { name="scico"; version="1.2.0"; sha256="1l7vin8zjnv3zhgv81v6qrx6nysd2kx10na1pfn6mmxvr1bsj9jp"; depends=[]; }; + scidb = derive2 { name="scidb"; version="3.0.0"; sha256="1shaw6g9s1z3vwclj7gfsp14vzqd8wvwkm5jsmmbif0bcrh43pfh"; depends=[bit64 curl data_table digest openssl]; }; scientoText = derive2 { name="scientoText"; version="0.1"; sha256="0f18hg9s50lbbgl0fqjv45yhynpnsxj8wwm07g126snzr68gbd21"; depends=[stringr tm]; }; scifigure = derive2 { name="scifigure"; version="0.2"; sha256="1zc88r1lnb0cws130hq4rjc34rrp6zkmi8yhkwsm3vkznbhi4iba"; depends=[]; }; - scio = derive2 { name="scio"; version="0.9.0"; sha256="0xj9iiqjz2k1llq09k2l3g7zn5zw2ayifhqsdm8fc2j9r4m1nrn2"; depends=[glasso QUIC]; }; sciplot = derive2 { name="sciplot"; version="1.2-0"; sha256="097zcgjsv54f6wd8fjwh2xb406j6yrw94v9pcxa0zln1q7fs93vk"; depends=[]; }; + scipub = derive2 { name="scipub"; version="1.1.0"; sha256="0mnjnnd3bpiqi38x3mhl4isc4j1lln5hrjp2cx544h2abr8iw83b"; depends=[dplyr forcats purrr stringr tibble tidyr tidyselect]; }; sclero = derive2 { name="sclero"; version="0.2"; sha256="1vqysby822s958msnwcqmz78193vrgmpf6si1jnfb9cj90hh7wgg"; depends=[plyr RImageJROI spatstat]; }; sclr = derive2 { name="sclr"; version="0.3.1"; sha256="10pihx35889w509ijbyq5hzslk9n7kakjnfscg7p0dq198nbpyca"; depends=[broom dplyr purrr rlang tibble]; }; scmamp = derive2 { name="scmamp"; version="0.2.55"; sha256="17qhj9l1akxachaimy9d5rls8adph8aalj3qr6ckip29a8ma9gf7"; depends=[ggplot2 graph reshape2 Rgraphviz]; }; - scoper = derive2 { name="scoper"; version="0.2.0"; sha256="1b4kyrml5yk46fw9hrp21i6w6ylck5qs64y0mzkbqr2wf1x4ncvs"; depends=[alakazam data_table doParallel dplyr foreach ggplot2 Rcpp rlang seqinr shazam stringi stringr]; }; + scoper = derive2 { name="scoper"; version="1.1.0"; sha256="0ls1c4h7l5wk6y4yw8278rg3kyk96508pc9cd4k68kncj302xj26"; depends=[alakazam data_table doParallel dplyr foreach ggplot2 Rcpp rlang scales shazam stringi tidyr]; }; scopr = derive2 { name="scopr"; version="0.3.3"; sha256="1j45l5zcrpc4dnb6ik1v0jlqizpkijl0p656s869jhhvv55r6v2i"; depends=[behavr data_table memoise readr RSQLite stringr]; }; score = derive2 { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; scorecard = derive2 { name="scorecard"; version="0.3.0"; sha256="08zf99xxvl27lin5xqf781l3lr4cjlr8gyw5vw4ps1fnsn844c63"; depends=[data_table doParallel foreach ggplot2 gridExtra openxlsx stringi]; }; scorecardModelUtils = derive2 { name="scorecardModelUtils"; version="0.0.1.0"; sha256="09znaxrv14m58hsk5pac458xbpcsidc6ygcsw4q9j0p4yd80qbvl"; depends=[car e1071 gbm ggplot2 partykit randomForest reshape2 sqldf stringr]; }; scorepeak = derive2 { name="scorepeak"; version="0.1.2"; sha256="1g9n7kjqb9qk5b7hw8ysrc069w9dzc4z29ay6z1kbm0v4kkzp7bi"; depends=[checkmate Rcpp]; }; - scorer = derive2 { name="scorer"; version="0.2.0"; sha256="1mc4hxcrqzh4dmz5fy40740bnrp4fxia81fj3cdw9382p67ivhim"; depends=[Rcpp]; }; scoring = derive2 { name="scoring"; version="0.6"; sha256="114jlpbnm15fdan5lr40adxdzwajy3yhdw6dm4kvkvky6qhcx7q5"; depends=[]; }; scoringRules = derive2 { name="scoringRules"; version="1.0.0"; sha256="1jksv22hy8kazqwy6yjdjl32k7i558vcn7i13wc7fmary7v500km"; depends=[knitr MASS Rcpp RcppArmadillo]; }; + scoringutils = derive2 { name="scoringutils"; version="0.1.0"; sha256="1mqr2c1lgzmdcmv8lpk66xklln5d6p594q53c5pxh8akgg085i99"; depends=[data_table goftest scoringRules]; }; scout = derive2 { name="scout"; version="1.0.4"; sha256="0vr497g7g1xhf75cwjbjsns2fvdzy86iibbf5w0g2xylw82s4lh2"; depends=[glasso]; }; scpm = derive2 { name="scpm"; version="2.0.0"; sha256="1ib46m3i50annp90n2ih4qdxabxik4ngg9j0a5hgspsvk1i4hrvp"; depends=[interp lattice MASS Matrix mvtnorm RandomFields rgl]; }; scraEP = derive2 { name="scraEP"; version="1.1"; sha256="0dimvdjlgaymjmd3gf60hxcavpr58bpffrfhlksnrfzbb7an65dd"; depends=[data_table RCurl XML]; }; @@ -13406,17 +13915,18 @@ in with self; { scriptuRs = derive2 { name="scriptuRs"; version="0.1.0"; sha256="1wbvfqcc0raazhdc6pyp93q859ilxfz9rz338p3sb7fjyxvparbl"; depends=[]; }; scrm = derive2 { name="scrm"; version="1.7.3-1"; sha256="090gsa23l9s4x92q4n7ggp491fc8ghgnjw5p7j67gd1i1iwr55n8"; depends=[Rcpp]; }; scrobbler = derive2 { name="scrobbler"; version="0.2.15"; sha256="079ms94q2h8ciqi9b4w9i1md57x844jz464hk7rr564n9wcfp4gj"; depends=[httr jsonlite]; }; + scrollrevealR = derive2 { name="scrollrevealR"; version="0.1.0"; sha256="052yicg9qbybyp74w4mavh9vbacyrv8im8l1a0qxcvlafhi1gjy8"; depends=[glue htmltools]; }; scrubr = derive2 { name="scrubr"; version="0.3.2"; sha256="1grh6gljxad2iig6vldv2j0wk83cj6v1pdqsldb6gp4kqyzbikq9"; depends=[crul curl data_table fastmatch hoardr jsonlite lazyeval magrittr Matrix qlcMatrix tibble]; }; scrypt = derive2 { name="scrypt"; version="0.1.3"; sha256="14iblgbp9v2by8fjbrpsd59iknp5babcz7j3yv1yxxzcwyb6wrrm"; depends=[Rcpp]; }; scs = derive2 { name="scs"; version="1.3-2"; sha256="10z5619gbnnygk8pkdx2qji56jlv1q6c1z4581pdkd9sfnhg1yp3"; depends=[]; }; sctransform = derive2 { name="sctransform"; version="0.2.1"; sha256="07v3lzccsrkh1glfxd1q20r8f8gl9ls5az0s1dvxm4vcls0hlhyn"; depends=[future_apply ggplot2 gridExtra MASS Matrix Rcpp RcppEigen reshape2]; }; - scuba = derive2 { name="scuba"; version="1.9-1"; sha256="1b92b6p9dn54rmcaw2ng41pvvvkmrzgg12d6zcr3yh8qgi89pvdi"; depends=[]; }; + scuba = derive2 { name="scuba"; version="1.10-0"; sha256="1ckq8lc92wpb6rimi5n70qnxngvdl38nrwfwayn7c7jh40ywn9fk"; depends=[]; }; sdPrior = derive2 { name="sdPrior"; version="1.0-0"; sha256="0g4crlasnvxz752n3az5jc681jvvj2g87c3a8s2h1i2vh64p5h37"; depends=[doParallel GB2 MASS mgcv mvtnorm pscl]; }; sdStaf = derive2 { name="sdStaf"; version="1.0.2"; sha256="0r7lqj30r3f0b18kpahi63zsdizcw2zjf1vvvs04s4cg1djjbcp3"; depends=[dismo dplyr ggplot2 raster rasterVis rgdal rgeos sp tidyr]; }; sda = derive2 { name="sda"; version="1.3.7"; sha256="1v0kp6pnjhazr8brz1k9lypchz8k8gdaby8sqpqzjsj8klghlcjp"; depends=[corpcor entropy fdrtool]; }; sdafilter = derive2 { name="sdafilter"; version="1.0.0"; sha256="0y692j25pln46dp6xvaq17fkym0461yqfa6rv5avfw2b240k8jiq"; depends=[glasso glmnet huge POET]; }; sdat = derive2 { name="sdat"; version="1.1"; sha256="1mxijw2yfblqjvqqb2xrzhfn9c872i1q9ggw24xicvr2fk4lvjw6"; depends=[]; }; - sdcHierarchies = derive2 { name="sdcHierarchies"; version="0.18.2"; sha256="09f9b6padx6jsjhh0d7qa7qs99rar4j9fbmyp9569ywc9ld7z7mm"; depends=[cli data_table jsonlite rlang shiny shinyjs shinythemes shinyTree]; }; + sdcHierarchies = derive2 { name="sdcHierarchies"; version="0.18.3"; sha256="0snsl790ivx21dynryscy9arc8bmfh4pigh6j9m3b8lls8alcpqz"; depends=[cli data_table jsonlite rlang shiny shinyjs shinythemes shinyTree]; }; sdcMicro = derive2 { name="sdcMicro"; version="5.5.1"; sha256="1jabihj878w9wk7lmbnjh9v14jdb14w6ir10ram2bprlxah0bn07"; depends=[car carData cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase shiny shinyBS VIM xtable]; }; sdcSpatial = derive2 { name="sdcSpatial"; version="0.1.1"; sha256="1szv2nb758k3x5scxml2ns11fi99rlmd11r3fhzy3dgylf0m0xnm"; depends=[raster]; }; sdcTable = derive2 { name="sdcTable"; version="0.31"; sha256="064aippj8p4mc1zazvkzcjz59hlfybsz6wz1ppwj6d9638ha1a96"; depends=[data_table knitr lpSolveAPI Rcpp Rglpk rlang sdcHierarchies slam stringr]; }; @@ -13424,14 +13934,14 @@ in with self; { sddpack = derive2 { name="sddpack"; version="0.9"; sha256="1963l8jbfwrqhqcpif73di9i5mb996r4f8smjyil6l7sdir7cg9l"; depends=[]; }; sde = derive2 { name="sde"; version="2.0.15"; sha256="0gxyhq9lafd62y68h7fd746a3jz3jdsm0shgwm2ylmp4a2f5cdmm"; depends=[fda MASS zoo]; }; sdef = derive2 { name="sdef"; version="1.7"; sha256="0x2b8shp02ik0dd11wi3jcrl9h9m963fnkfy47fwwhav9x6jg0jf"; depends=[]; }; - sdm = derive2 { name="sdm"; version="1.0-82"; sha256="0ipzpn5npdb8jdpmih7n5z07q9wpcaxrmggbxm1hhj57m3sp7xc0"; depends=[raster sp]; }; + sdglinkage = derive2 { name="sdglinkage"; version="0.1.0"; sha256="102li274s9jjxqabk8ggv9mrdd4014d5hp0hqsna4swly8zvdcyn"; depends=[arsenal bnlearn ggplot2 reshape synthpop visNetwork]; }; + sdm = derive2 { name="sdm"; version="1.0-89"; sha256="1qi2hc06wnyz9apfpbypngvs8w20r1jq3mr6l6xpjdyg6ks1m0rc"; depends=[raster sp]; }; sdmpredictors = derive2 { name="sdmpredictors"; version="0.2.8"; sha256="18374f2bnhh3nb62xf1h6fbqgpimlnkc2vbx5xkg5gyfylydz0v9"; depends=[R_utils raster rgdal]; }; sdmvspecies = derive2 { name="sdmvspecies"; version="0.3.2"; sha256="19avkag13ij1k65vqhmvcy8j50j8vrgw4mjc49x8i63w3d4z1wxh"; depends=[psych raster]; }; sdols = derive2 { name="sdols"; version="2.0.0"; sha256="0rwdfb34g1l58ad02jf7wxidgqlccqvijdsvdxqdq8f5p15cl30m"; depends=[salso]; }; sdprisk = derive2 { name="sdprisk"; version="1.1-6"; sha256="061x78irryc5phd8bv9cs2mfgiajgwmr85ryp1r47anadydb2haa"; depends=[numDeriv PolynomF rootSolve]; }; sdpt3r = derive2 { name="sdpt3r"; version="0.3"; sha256="02qv889mkzcilxzszzqcqgn9z5zmki0093mdriradbl1y8a27bp5"; depends=[Matrix]; }; sdtoolkit = derive2 { name="sdtoolkit"; version="2.33-1"; sha256="0pirgzcn8b87hjb35bmg082qp14idc5pfvm6dikpgkswag23hwh8"; depends=[]; }; - sdwd = derive2 { name="sdwd"; version="1.0.3"; sha256="0bwjpwmhg2d78pchcka6bypiypd9x07cpbaz68ww5z1f7lhxzd2m"; depends=[Matrix]; }; seacarb = derive2 { name="seacarb"; version="3.2.13"; sha256="0ahnjz02px41q2xz3azqfs17wj5dx7ncnzsrlc89wvqngmyn2k1n"; depends=[gsw oce]; }; seagull = derive2 { name="seagull"; version="1.0.6"; sha256="0bmmlxk2v82zhlxm8hj6p67capj4f4v6pdwlh09j75ca63jx36ry"; depends=[Rcpp RcppArmadillo]; }; sealasso = derive2 { name="sealasso"; version="0.1-2"; sha256="0cjy3fj170p5wa41c2hwscmhqxwkjq22vhg9kbajnq7df2s20jcp"; depends=[lars]; }; @@ -13439,40 +13949,40 @@ in with self; { searchable = derive2 { name="searchable"; version="0.3.3.1"; sha256="0xc87i2q42j7dviv9nj4hkgjvpfiprkkjpgzwsy47vp7q8024dv0"; depends=[magrittr stringi]; }; searcher = derive2 { name="searcher"; version="0.0.5"; sha256="1q12il35pfy34n669jzkjciln1ca8by7l1d8zkzv4297547i1qln"; depends=[]; }; seas = derive2 { name="seas"; version="0.5-2"; sha256="0hn4d5dc01zyycd7l3vj1sx6bq668n7fzffw9ypaa5l20fizs0ay"; depends=[MASS]; }; - season = derive2 { name="season"; version="0.3.10"; sha256="1gkn333k2ga545gkm6k9nky2n22yh1jgm58g7w693rsq3h3m0j5w"; depends=[ggplot2 MASS survival]; }; - seasonal = derive2 { name="seasonal"; version="1.7.0"; sha256="1mna8w1haj5h2rhiw7jkhprr6cc9qr0n8x73d10v0l732kx41n31"; depends=[x13binary]; }; + season = derive2 { name="season"; version="0.3.11"; sha256="19awxbjcp1zb6y7b2ka4hcq21lv7y76akry53hbmmk9k5f30naj1"; depends=[ggplot2 MASS survival]; }; + seasonal = derive2 { name="seasonal"; version="1.7.1"; sha256="09ydl0hi4zmxdm254m7kibfll1z5bqxs0y2lrqngb08rl33xgs19"; depends=[x13binary]; }; seasonalview = derive2 { name="seasonalview"; version="0.3"; sha256="1l705yc7ssldsfckbgnvd95sh3zzhpkmf1rr6ar2s60s3wsyly4n"; depends=[dygraphs htmlwidgets openxlsx seasonal shiny shinydashboard xtable xts zoo]; }; seastests = derive2 { name="seastests"; version="0.14.2"; sha256="04kx4sijnpsarq4iaclxvckgr5y0gmz5a0fmkkqjmfi3hm1kvw3d"; depends=[forecast xts zoo]; }; - seawaveQ = derive2 { name="seawaveQ"; version="1.0.0"; sha256="19vm1f0qkmkkbnfy1hkqnfz6x2a7g9902ka76bhpcscynl69iy56"; depends=[lubridate NADA survival]; }; - secr = derive2 { name="secr"; version="4.2.2"; sha256="09wf6dzssmcaa51s3c61k2n3z1xs5q981apzv03kbq6v0gbmisil"; depends=[abind MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sp stringr]; }; + seawaveQ = derive2 { name="seawaveQ"; version="2.0.1"; sha256="0p7yb4hha2xw96nwk342grmfc1721dqcbssx7ww7lqd29r9d0dzf"; depends=[lubridate plyr reshape2 rms survival]; }; + secr = derive2 { name="secr"; version="4.3.0"; sha256="13p7v539zifan6n89al1b5hmfimj4n2dv2kaxb8kwrn23kwr6ywd"; depends=[abind MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sp stringr]; }; secrdesign = derive2 { name="secrdesign"; version="2.5.11"; sha256="02fysbx6w1iw2ig54f9sgr74c40wfjwiwpdmxdjymsaynqnm9anl"; depends=[abind openCR secr]; }; - secret = derive2 { name="secret"; version="1.0.0"; sha256="09b28f7ndc167bbanbdydralykq718fixnrgs5xr9d3fbdhz1vdl"; depends=[assertthat curl jsonlite openssl rprojroot]; }; + secret = derive2 { name="secret"; version="1.1.0"; sha256="063gpyc2s2l6zw1j8b8ppzsv9kjsf0s77s5wcn7ipmwkj8qr2g4b"; depends=[assertthat curl jsonlite openssl rprojroot]; }; secrettext = derive2 { name="secrettext"; version="0.1.0"; sha256="129v524yyb464mcij7hvzv05cxliaz5nm7v30g9g9ppskcdqhsx2"; depends=[dplyr magrittr rlang stringr testthat tidyr]; }; secrlinear = derive2 { name="secrlinear"; version="1.1.1"; sha256="0jcvraypkss1gphh4cjb0b4v9460fj4dw80yd057ah11p9942ggs"; depends=[igraph maptools MASS rgdal secr sp]; }; secsse = derive2 { name="secsse"; version="2.0.0"; sha256="0qsbn56vc6y19hmc94bimv1mf86ayxa8rj38qvvsxjfm9czmw2ac"; depends=[ape apTreeshape DDD deSolve doParallel foreach geiger phylobase]; }; secuTrialR = derive2 { name="secuTrialR"; version="1.0.3"; sha256="06lmm3hpspi3vd5wvzpj9skay823z4km5jbxg11sv4xqh16sh4qh"; depends=[dplyr haven igraph lubridate magrittr purrr readr readxl rlang stringr tibble tidyr]; }; secure = derive2 { name="secure"; version="0.5"; sha256="16pv5m7rrcs8hcjj3kylq7smyzf2qk8rkg9m1b421w0ac7lg04x1"; depends=[MASS Rcpp RcppArmadillo]; }; securitytxt = derive2 { name="securitytxt"; version="0.1.1"; sha256="0yrydcc68qcsq5wrdfgwfi347pdd0zc8hp2ikmw3iz31anm3b4yw"; depends=[Rcpp]; }; - see = derive2 { name="see"; version="0.4.1"; sha256="0w32jqs9b7bqm27ld21pmlwxsbhwpwwa5bv6w15p1lx56gzi5smi"; depends=[bayestestR dplyr effectsize ggplot2 ggridges insight magrittr parameters rlang]; }; + see = derive2 { name="see"; version="0.5.2"; sha256="1wxbiipd5aqvw0ac0a1s8mg8ycghvakkc0wjnsdlrn9bjc82aik4"; depends=[bayestestR dplyr effectsize ggplot2 ggridges insight magrittr parameters rlang]; }; seeclickfixr = derive2 { name="seeclickfixr"; version="1.1.0"; sha256="1agsqq2msrqrssffc6liyjjs6nqm90xy2inlcjbkdac5dhinjc4n"; depends=[jsonlite RCurl]; }; seedCCA = derive2 { name="seedCCA"; version="3.0"; sha256="076pkv083dp71m6ifjzx9spfwmc1625r9d72spf0vhf8pwwsha4v"; depends=[CCA corpcor]; }; - seeds = derive2 { name="seeds"; version="0.9.0"; sha256="18yyiwv00vxfxdrw88hqilcv2307h93wlq1wkg4kqf6s3jsf40l0"; depends=[callr coda Deriv deSolve dplyr ggplot2 Hmisc MASS matrixStats mvtnorm pracma R_utils Ryacas statmod tidyr]; }; + seeds = derive2 { name="seeds"; version="0.9.1"; sha256="0adk7y5ripg78bwkdgnlfwq9w9h6mlpdrikgbnn5z8az2qahc0in"; depends=[callr coda Deriv deSolve dplyr ggplot2 Hmisc MASS matrixStats mvtnorm pracma R_utils Ryacas statmod tidyr]; }; seedwater = derive2 { name="seedwater"; version="1.0"; sha256="0qqhjax16lnyriv6q9n89g93bs1zy8xwx9jp0xbilba7djzjh33g"; depends=[rpanel tkrplot]; }; - seer = derive2 { name="seer"; version="1.1.4"; sha256="02vv9vrnp8rj44qpn9yiigg95n7bg5v89pjdmrl5y8y1n8ax86xn"; depends=[dplyr ForeCA forecast forecTheta furrr future magrittr Mcomp purrr randomForest repmis stringr tibble tsfeatures urca]; }; - seewave = derive2 { name="seewave"; version="2.1.5"; sha256="1qg8f5gik9pw6f9mcxqmrc9x3003s8vdm6g01pjjpyc9qaqiz2vi"; depends=[tuneR]; }; + seer = derive2 { name="seer"; version="1.1.5"; sha256="19p6gvi3g1fjzi3rb1xm4svff7nb0bcmbf4fzijvqpzkz0gpi10k"; depends=[dplyr forecast forecTheta furrr future magrittr MASS purrr randomForest stringr tibble tsfeatures urca]; }; + seewave = derive2 { name="seewave"; version="2.1.6"; sha256="123h3q0gps0vy9sikr7gjphnv9m3l4h4mykiydjllmrpaw1s1844"; depends=[tuneR]; }; seg = derive2 { name="seg"; version="0.5-7"; sha256="165hl55vzyf3jqlykqji37p2syzhc8dxdjxd4wwr562qnlymzszx"; depends=[sp splancs]; }; segMGarch = derive2 { name="segMGarch"; version="1.2"; sha256="0chw41h25jka9wa3rf3d8dq2ym47379jflv33q6qxaak8xy1kmd9"; depends=[corpcor doParallel fGarch foreach iterators mvtnorm Rcpp RcppArmadillo]; }; segRDA = derive2 { name="segRDA"; version="1.0.2"; sha256="0az27z4pppyz5slckwmgk6qqix710m1s96drlq4fh8bqn2qmz812"; depends=[vegan]; }; segclust2d = derive2 { name="segclust2d"; version="0.2.0"; sha256="1n5h92dza7wgfpfyzlfb7hbrqb0a8dhc38vml9645gym3a1riwn5"; depends=[dplyr ggplot2 magrittr plyr RColorBrewer Rcpp RcppArmadillo reshape2 scales zoo]; }; segmag = derive2 { name="segmag"; version="1.2.4"; sha256="1i717xg1z7s35pkwzywgjf9wx7zj9xksv0k87h7p1q62y073qbqm"; depends=[plyr Rcpp]; }; segmenTier = derive2 { name="segmenTier"; version="0.1.2"; sha256="01xbcddinjbkbqkwq2lnsxd3gw8fxys58p498dc2lw8psz3g2wgc"; depends=[Rcpp]; }; - segmented = derive2 { name="segmented"; version="1.1-0"; sha256="06cxdrqgnpk5fvbam5i7qa4n71wry0yvlj0jpwbxf267mvpx10fh"; depends=[]; }; + segmented = derive2 { name="segmented"; version="1.2-0"; sha256="0r83p36l6m5sy4lxfjbfajn4gcqb0wv9zh7arny02s6c7fb4756y"; depends=[]; }; segmentr = derive2 { name="segmentr"; version="0.2.0"; sha256="0q5kxxiw0akpk7w2a2l9zp7v4pvqblzdvrld5fjyl5f6h8hsb40z"; depends=[foreach glue Rcpp]; }; segregation = derive2 { name="segregation"; version="0.3.0"; sha256="0bx3w2dhbikx7vk5gs0b2jc4q4zvwlrj4crv6agmc2pn3ap7i88k"; depends=[data_table]; }; seismic = derive2 { name="seismic"; version="1.0"; sha256="02d11c3filzghi8cvryikaidmk40d4z3qxsqs7bjdhxyf814caw8"; depends=[]; }; - seismicRoll = derive2 { name="seismicRoll"; version="1.1.3"; sha256="1868g8mlmhhlc6d6p86xlp6qhfbbrhba02dmx1zcvydsbqdvnpjj"; depends=[Rcpp]; }; + seismicRoll = derive2 { name="seismicRoll"; version="1.1.4"; sha256="036yvfgy6d4dppfgqd8yx08k3mb03p44hch1ihcmmramz5cvdc29"; depends=[Rcpp]; }; sejmRP = derive2 { name="sejmRP"; version="1.3.4"; sha256="1j3sadbp12fip3n96s0hx1sg4kzwx8z01p1c905kv8gffhkz9bh0"; depends=[cluster DBI dplyr factoextra RPostgreSQL rvest stringi tidyr XML xml2]; }; - selac = derive2 { name="selac"; version="1.7.0"; sha256="0zj5l3q0apn8z0bxna7z7rraq89dq9qfqfclx9ybazr4saq8zk5w"; depends=[ape data_table deSolve expm MASS Matrix nloptr nnet phangorn RColorBrewer seqinr statmod zoo]; }; + selac = derive2 { name="selac"; version="1.7.5"; sha256="1r9g6sdm3341r7666hfpcy17yprsyckhbmb2mpa93kkj5b6pd7pl"; depends=[ape data_table deSolve expm GenSA MASS Matrix nloptr nnet phangorn RColorBrewer seqinr statmod zoo]; }; selectMeta = derive2 { name="selectMeta"; version="1.0.8"; sha256="0i0wzx5ggd60y26lnn4qk4n8h27ahll9732026ppks1djx14cdy0"; depends=[DEoptim]; }; selectapref = derive2 { name="selectapref"; version="0.1.2"; sha256="0njibljh3hiqdn4wdb031bdg1bh3xpixgczbi5i01gaavybsq4cc"; depends=[]; }; selectiongain = derive2 { name="selectiongain"; version="2.0.591"; sha256="11gd9xdn3jl3mg3c9ykw8bqvcxhihn19iqsy8dl8bacijjv84bva"; depends=[mvtnorm]; }; @@ -13482,32 +13992,33 @@ in with self; { seleniumPipes = derive2 { name="seleniumPipes"; version="0.3.7"; sha256="1krpzh2gy3yl07c2n1d8q21xjc2qcv5ac1kv7212710bxkdyfad6"; depends=[httr jsonlite magrittr whisker xml2]; }; selfea = derive2 { name="selfea"; version="1.0.1"; sha256="0zyxbd5vg8nhigill3ndcvavzbb9sbh5bz6yrdsvzy8i5gzpspvx"; depends=[ggplot2 MASS plyr pwr]; }; selfingTree = derive2 { name="selfingTree"; version="0.2"; sha256="18ylxmg2ms4ccgm4ahzfl65x614wiq5id7zazjjz5y75h8gs7gzj"; depends=[foreach]; }; - sem = derive2 { name="sem"; version="3.1-9"; sha256="1f9c6g6pfx66gd2pappcsqh484ah6a0x4z47hpd46rah0817hcsa"; depends=[boot MASS matrixcalc mi]; }; + sem = derive2 { name="sem"; version="3.1-11"; sha256="03j3ig6fy34pi6nwfq9w8f5m555lilw5skr1vn6ay4yvjmvavc9k"; depends=[boot MASS matrixcalc mi]; }; semEff = derive2 { name="semEff"; version="0.3.0"; sha256="18wmxkk0wmk7y3g1r7fwif7f6mhcgrsb60iv20d8f7bkhwkvfnx4"; depends=[boot lme4]; }; semPLS = derive2 { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; }; semPlot = derive2 { name="semPlot"; version="1.1.2"; sha256="0l1v9yi1pv59iwfknw4dh9qskk5y8r347jq1vq13gnfd3bmd71xr"; depends=[colorspace corpcor igraph lavaan lisrelToR OpenMx plyr qgraph regsem rockchalk sem XML]; }; - semPower = derive2 { name="semPower"; version="1.0.0"; sha256="0wciz5qrd40q4mxq96pibnya11ac42n37c9xhjd4zfhznhjz06bb"; depends=[]; }; - semTable = derive2 { name="semTable"; version="1.7"; sha256="1zrp4iqdv9hlqicy5mqlvjrd6w9q8542hvdxs95l951xm2n4jp3z"; depends=[kutils lavaan plyr stationery xtable]; }; - semTools = derive2 { name="semTools"; version="0.5-2"; sha256="1zj841pszfsikzp82cmh463qyc4xhdrqjqcnhc2r8mcflv12irv6"; depends=[lavaan]; }; + semPower = derive2 { name="semPower"; version="1.0.1"; sha256="0z7lrbl76ff8imldv6ibripdchg4f559lg2aw41zbqz9w3g2lpm4"; depends=[]; }; + semTable = derive2 { name="semTable"; version="1.8"; sha256="0qr420rnz59q8arf6x05iy1zyh7pv31ldi2rsw1j2a00fbpp4ndf"; depends=[kutils lavaan plyr stationery xtable]; }; + semTools = derive2 { name="semTools"; version="0.5-3"; sha256="0k3w10fnq0l89inhxvnypyrfhlrm921mfn0kwyyfpndvbqizky1d"; depends=[lavaan]; }; semantic_dashboard = derive2 { name="semantic.dashboard"; version="0.1.5"; sha256="0bazaznmxmks11zgb9npvkblhy0ym554fnvgqsa02rlxxzzzljib"; depends=[glue htmltools shiny shiny_semantic]; }; semdiag = derive2 { name="semdiag"; version="0.1.2"; sha256="0kjcflw7dn907zx6790w7hnf5db6bf549whfsc0c2r173kf13irp"; depends=[sem]; }; semdrw = derive2 { name="semdrw"; version="0.1.0"; sha256="16hm1ifgspnxnlf3rfg5ylmql2fq91ig8nc5953ggyhfrjwbqx15"; depends=[dplyr lavaan psych semPlot semTools shiny shinyAce]; }; semds = derive2 { name="semds"; version="0.9-6"; sha256="10kvcmcy6qa2r5sram6azqgzl528rghfxgw2f2bq2fvhhq127dzq"; depends=[minpack_lm pracma]; }; semiArtificial = derive2 { name="semiArtificial"; version="2.3.1"; sha256="1rjf8wsbwi6kfwsh89kblhl0f3m7rrma7gly7b4xm7bj7jdkljkr"; depends=[cluster CORElearn flexclust fpc ks logspline MASS mcclust nnet robustbase RSNNS StatMatch timeDate]; }; - seminr = derive2 { name="seminr"; version="1.0.1"; sha256="1v1mvjfhj5li0xv2iipbqcnl2vhaa1j6hv2x4jcbaiym44jzblhf"; depends=[]; }; + seminr = derive2 { name="seminr"; version="1.1.0"; sha256="1j0sd9af1ay5i6wnw2slnfhfj16vn2zlyisslr95s1x16zqg8074"; depends=[lavaan MASS]; }; semnar = derive2 { name="semnar"; version="0.7.1"; sha256="0g6l4377i9wdwbcrdhdmsph68bd6qwc5mjlw824mpxn0ggg6vx72"; depends=[jsonlite leaflet lubridate magrittr urlshorteneR]; }; + semnova = derive2 { name="semnova"; version="0.1-6"; sha256="1vghf8gy0vahwn3nq752wm0rbj33jdy69yqjzin94sk8xa42d0wi"; depends=[lavaan MASS Matrix]; }; semsfa = derive2 { name="semsfa"; version="1.1"; sha256="1k6i1m4r9y7j85rlrsgfjm8w15ax4xgf70xyvqwsszmf9950ldxx"; depends=[doParallel foreach gamlss iterators mgcv moments np]; }; semtree = derive2 { name="semtree"; version="0.9.14"; sha256="1gyjrvqvqmm0dcbddjq90v3gsniiz9rl66nxiayvfbkhs4pih39z"; depends=[bitops cluster digest expm ggplot2 MASS matrixcalc matrixStats mvtnorm OpenMx plotrix rpart rpart_plot sets stringr tidyr]; }; semver = derive2 { name="semver"; version="0.2.0"; sha256="10wpkyms2cix3bsin2q0qhkbl445pwwpa5gm2s4jjw1989namkxy"; depends=[assertthat Rcpp]; }; semverutils = derive2 { name="semverutils"; version="0.1.0"; sha256="0y3zh8n8bgs3ag8yy9cnp0i0xrn0iqflcbrya70glyb40148w9sw"; depends=[foreach R6]; }; - sen2r = derive2 { name="sen2r"; version="1.3.4"; sha256="0cbrw7cjj555gclvhrf3ghz7i5qy6prba205pw6k8zf8fd8r8f0v"; depends=[data_table doParallel foreach geojsonio httr jsonlite leaflet leaflet_extras mapedit raster RcppTOML rgdal sf shiny shinydashboard shinyFiles shinyjs shinyWidgets stars XML]; }; + sen2r = derive2 { name="sen2r"; version="1.3.7"; sha256="1w57hac7mn7447fifvmhk2fkrdvlczglq9nk317dh0pb2fzqlnvn"; depends=[data_table doParallel foreach geojsonio httr jsonlite raster RcppTOML rgdal sf stars XML]; }; sendmailR = derive2 { name="sendmailR"; version="1.2-1"; sha256="0z7ipywnzgkhfvl4zb2fjwl1xq7b5wib296vn9c9qgbndj6b1zh4"; depends=[base64enc]; }; sendplot = derive2 { name="sendplot"; version="4.0.0"; sha256="0ia2xck94nwirwxi38nv0viz5wb8291yiak6f0wgwh84irsrfp1h"; depends=[rtiff]; }; sensR = derive2 { name="sensR"; version="1.5-2"; sha256="073za0z6dawba2nd45hs20m0143kckxn3iglkyqz9vdfqwyv7wlq"; depends=[MASS multcomp numDeriv]; }; - sensemakr = derive2 { name="sensemakr"; version="0.1.2"; sha256="0p5rh511fymbh8vkfwdv62xxwflkmrqwas1b16m0hlzjwyzdn03m"; depends=[]; }; + sensemakr = derive2 { name="sensemakr"; version="0.1.3"; sha256="1pgzmv72jsl359lni9z0fc7szyy9aiqyi2lwkmvnc8kmqd5dmk1f"; depends=[]; }; sensiPhy = derive2 { name="sensiPhy"; version="0.8.5"; sha256="1kjkdklva5wzmw071gbn1v9g5cf0wzmvwgy5y0dgi530v6byaw8j"; depends=[ape caper geiger ggplot2 phylolm phytools]; }; sensibo_sky = derive2 { name="sensibo.sky"; version="1.0.0"; sha256="0s8gbj7qrcbcnflp7v0s93ykh2xgk7jwpyvzndj1f90hjy20x3bc"; depends=[glue httr jsonlite]; }; - sensitivity = derive2 { name="sensitivity"; version="1.18.1"; sha256="1dad2c2ckvb86izb1xsa12298sx9ywnpvb3h25x67y4jygcnhzjg"; depends=[boot ggplot2]; }; + sensitivity = derive2 { name="sensitivity"; version="1.22.1"; sha256="15g4bxdi128x0yb81h225c8frcvbp99xf8qvncmycyzziz2cbdqi"; depends=[boot ggplot2 numbers Rcpp RcppArmadillo]; }; sensitivity2x2xk = derive2 { name="sensitivity2x2xk"; version="1.01"; sha256="1r829k939zzmi0j4chdaniajchcflmmjrl3a9hwnkg0wkfnjbvdl"; depends=[BiasedUrn mvtnorm]; }; sensitivityCalibration = derive2 { name="sensitivityCalibration"; version="0.0.1"; sha256="1fn07dra7dhpsg6f1yn1ayfpmvwaxma8cps94070nrpfwmdvi04g"; depends=[ggplot2 ggrepel plotly relaimpo splitstackshape stringi]; }; sensitivityPStrat = derive2 { name="sensitivityPStrat"; version="1.0-6"; sha256="0rfzvkpz7dll3173gll6np65dyb40zms63fkvaiwn0lk4aryinlh"; depends=[survival]; }; @@ -13519,18 +14030,20 @@ in with self; { sensobol = derive2 { name="sensobol"; version="0.2.2"; sha256="0j5nn5zmz7xfiv2zkik6k12w962p7m60czni9hsfndvvpvwiy2i5"; depends=[boot data_table ggplot2 magrittr matrixStats randtoolbox Rdpack rlang scales stringr]; }; sensory = derive2 { name="sensory"; version="1.1"; sha256="1zd0ajrymxi6gygcq9fqgwgy0g6c3cqz53x0k5m0ihbmh11rc7s7"; depends=[gtools MASS Matrix]; }; senstrat = derive2 { name="senstrat"; version="1.0.3"; sha256="0j6mb55v5ivqvk8nn8fjlzrbdgj6csa58yc6gy1g07m7gk2qz2np"; depends=[BiasedUrn MASS]; }; + sentencepiece = derive2 { name="sentencepiece"; version="0.1.2"; sha256="062qhvcgrl0r7lxrhjkyrncl8nihf3fkvwjish93shsrgc5596r5"; depends=[Rcpp]; }; sentimentr = derive2 { name="sentimentr"; version="2.7.1"; sha256="13myh7w9pynmgvqspsxpnj8mz8jz8nwkwjyax4hahvwb9707hf2s"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean textshape]; }; - sentometrics = derive2 { name="sentometrics"; version="0.8.1"; sha256="1kfip67fiplkwcsj35vhkihgnaczx2fj6cvv0mha2pm5c2n5j8l0"; depends=[caret data_table foreach ggplot2 glmnet ISOweek quanteda Rcpp RcppArmadillo RcppParallel RcppRoll stringi]; }; + sentometrics = derive2 { name="sentometrics"; version="0.8.2"; sha256="1yrcm3wqnlcd5r4h1zwiz2wv6xl751p9h0537z8x5npf8c4clxp8"; depends=[caret data_table foreach ggplot2 glmnet ISOweek quanteda Rcpp RcppArmadillo RcppParallel RcppRoll stringi]; }; sentryR = derive2 { name="sentryR"; version="1.1.0"; sha256="0kz81dbxg4zyns829cjhjm2g88pxzaaxdk7c8qabvl0zgqys2chy"; depends=[httr jsonlite stringr tibble uuid]; }; separationplot = derive2 { name="separationplot"; version="1.3"; sha256="0ggyr4asp86hvdp4bwdkljz9b2gzdxm2y9nbz2srlgh3m4hlz2cs"; depends=[foreign Hmisc MASS RColorBrewer]; }; - seplyr = derive2 { name="seplyr"; version="0.8.5"; sha256="0cccnggnix5w2a31prvnsp2hl6x8k4rm4nchik9aiqwj2x5kz3hq"; depends=[dplyr rlang tidyr wrapr]; }; + seplyr = derive2 { name="seplyr"; version="1.0.0"; sha256="0m6dyg48npyw9dafqlffm1haivcs0qlpg81m3b99sjiwswxvx2lh"; depends=[dplyr rlang tidyr wrapr]; }; seqCBS = derive2 { name="seqCBS"; version="1.2.1"; sha256="176ggpdcgmpsjixmz0ldknyd0vw120kjyrid3bq2bn4cgkwzb74z"; depends=[clue]; }; seqDesign = derive2 { name="seqDesign"; version="1.2"; sha256="10p8ldj83mvhpcz1yas4xns5qh8zbs533na8nv87phngi8dsb76m"; depends=[survival]; }; seqHMM = derive2 { name="seqHMM"; version="1.0.14"; sha256="0ybdp5364jddakkd7rawrfk87hn30fgjpsirlz2440w600m69ydr"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; seqICP = derive2 { name="seqICP"; version="1.1"; sha256="1dfhl7g47icjw38p9c0hyvnn3pwzw7pndywk22vgcyfhiz23xjcp"; depends=[dHSIC mgcv]; }; - seqMeta = derive2 { name="seqMeta"; version="1.6.7"; sha256="11dscdrlnk5jzg0q2g59qis4xjr4xs86bi463jmhq53n9gsb4i1l"; depends=[CompQuadForm coxme Matrix survival]; }; seqRFLP = derive2 { name="seqRFLP"; version="1.0.1"; sha256="1i98hm8wgwr8b6hd237y2i9i0xgn35w4n2rxy4lqc5zq71gkwkvk"; depends=[]; }; - seqgendiff = derive2 { name="seqgendiff"; version="1.2.1"; sha256="1xidf5dqd7vbs6vl73q5ja1hfhlqsc3d212c0si2wm8f8fsb1bw3"; depends=[assertthat cate clue irlba matchingR pdist sva]; }; + seqest = derive2 { name="seqest"; version="1.0.1"; sha256="06zk87n26305m0hy6lg7v3bpxmsqvinwkvw3dvmzkqp5jdkhwikb"; depends=[foreach geepack MASS mvtnorm nnet Rcpp RcppArmadillo VGAM]; }; + seqgendiff = derive2 { name="seqgendiff"; version="1.2.2"; sha256="0vrmh4h2g4hvx8ix5jyc4bhp8vpr00fcqsfbf9r0808jqnlwgcnr"; depends=[assertthat cate clue irlba matchingR pdist sva]; }; + seqhandbook = derive2 { name="seqhandbook"; version="0.1.0"; sha256="0zncpjabazci92wzw126i491669gidkyiw7zjp7iw23m6jaf71l4"; depends=[TraMineR]; }; seqinr = derive2 { name="seqinr"; version="3.6-1"; sha256="0j30za6kji6y3v09cvcydiacnp65pv6ig8aw7cydl47l5s9chky4"; depends=[ade4 segmented]; }; seqmagick = derive2 { name="seqmagick"; version="0.1.3"; sha256="0983k7fbcv4ai42cxxi4f854b9mqx68rgyvy0mjhpb6md7ba59jy"; depends=[Biostrings magrittr]; }; seqminer = derive2 { name="seqminer"; version="8.0"; sha256="00jzj8mwb0zaiwlifd41b26mrq9mzigj18nc29dydi0r42hxg16i"; depends=[]; }; @@ -13539,33 +14052,35 @@ in with self; { sequence = derive2 { name="sequence"; version="2.0"; sha256="0r5h96gcp18lwgrl2pjlr71xqspkf6qmm1m0xjq5vadalfa7y294"; depends=[]; }; sequences = derive2 { name="sequences"; version="0.5.9"; sha256="17571m525b6a3k4f0m936wfq401181gx1fpb7x4v0fhaldzdmk3a"; depends=[Rcpp]; }; sequenza = derive2 { name="sequenza"; version="3.0.0"; sha256="13l16lacdcf7fn96yj3xqxap0l19ma9ppkxxx5qk9f5abbvdk303"; depends=[copynumber iotools pbapply readr seqminer squash]; }; - sergeant = derive2 { name="sergeant"; version="0.5.2"; sha256="02chkyvmwd4nimw62v82rfbid1xqw5b1335na44pdi675g904250"; depends=[DBI dbplyr dplyr htmltools httr jsonlite purrr readr scales]; }; - serial = derive2 { name="serial"; version="2.1.4"; sha256="1wvs3aa9h1dff2jrxszqwrfv2b281zap1dj2mhlx2w4k8hnggas0"; depends=[]; }; + sequoia = derive2 { name="sequoia"; version="2.0.7"; sha256="1lyzvxj7vdlb7p9df6lp67qn8zqn3sv5r2absrxikmxfbfdj3s09"; depends=[plyr]; }; + sergeant = derive2 { name="sergeant"; version="0.9.0"; sha256="1iyb0191hkkhhsr4507b1c6j7c7z7lz1v0m2y7flc50yfxicb1fb"; depends=[bit64 DBI dbplyr dplyr htmltools httr jsonlite magrittr purrr readr scales tibble]; }; + serial = derive2 { name="serial"; version="3.0"; sha256="1y1gj0lcdn5apiv6c6arks6pqhsbvnrfym6n2izjarx2c27ijrjj"; depends=[]; }; seriation = derive2 { name="seriation"; version="1.2-8"; sha256="1zbdxq0s5rc5v307b69fw9k52m0654ls7pf22lh35ggirig6lwsk"; depends=[cluster colorspace dendextend gclus gplots MASS qap registry TSP]; }; serieslcb = derive2 { name="serieslcb"; version="0.4.0"; sha256="1ip4k2xzg06hwsni62ai1whs1zzhwlf94507inpfpqz3jmmafrhq"; depends=[gplots shiny]; }; seroincidence = derive2 { name="seroincidence"; version="2.0.0"; sha256="0sam4y7w6prswz0izkm1a9v2k5rv7z22g1ajy15n9xix9aml5ms4"; depends=[]; }; - serpstatr = derive2 { name="serpstatr"; version="0.0.1"; sha256="05nl61i1ida6pj6nqx7yvn6wz4ww43ix63pvqa7539r8lr6n3mpf"; depends=[httr]; }; + serpstatr = derive2 { name="serpstatr"; version="0.0.2"; sha256="1qjaws8df157qz66x1389aacpddyawgc10fm8flx9kb0kvfp3ybb"; depends=[httr]; }; serrsBayes = derive2 { name="serrsBayes"; version="0.4-1"; sha256="0618415n2izdgv85cnmlnpwy0lz7rnimspq8986w5w1ywhw2xpbm"; depends=[Matrix Rcpp RcppEigen truncnorm]; }; servosphereR = derive2 { name="servosphereR"; version="0.1.1"; sha256="0m1fjd3f1s2ss54xmcrm3p0c33hhi2dj0vim790g4y0mw2aicc8l"; depends=[data_table dplyr magrittr purrr rlang]; }; - servr = derive2 { name="servr"; version="0.16"; sha256="106skz04iq4dkblr17idxsxfcfqic6rcaz8mahydkwjjppnhp5fc"; depends=[httpuv jsonlite mime xfun]; }; + servr = derive2 { name="servr"; version="0.18"; sha256="0xfbf1a1w34hbsx4jrdr4rqf22v7gf1p37ngknglv1dyxih7ipja"; depends=[httpuv jsonlite mime xfun]; }; sesem = derive2 { name="sesem"; version="1.0.2"; sha256="0b1xzv38wpkhhlq87xrvlh45b8ksbi8bg4ar5hrf8gxa19r9rmi5"; depends=[gplots lavaan mgcv]; }; session = derive2 { name="session"; version="1.0.3"; sha256="04mcy1ac75fd33bg70c47nxqxrmqh665m9r8b1zsz5jij1sbl8q5"; depends=[]; }; sessioninfo = derive2 { name="sessioninfo"; version="1.1.1"; sha256="0j5f3l58fynxx3v0w62vqpii7miabszgljpja36xx9s8hikh8sqn"; depends=[cli withr]; }; set = derive2 { name="set"; version="1.1"; sha256="0b6qzy3mqf2gfc5gjrn1k6k7ymprjzs2i948zsgcqdkgr8acasbm"; depends=[do]; }; - set6 = derive2 { name="set6"; version="0.1.3"; sha256="0l39zf3mkw810pzgd9s3vwqp4bajls86prnfmwfcknna0wfxk8ka"; depends=[checkmate R6]; }; + set6 = derive2 { name="set6"; version="0.1.8"; sha256="03hmnqcj38aiqcnqrqjx4wpgar1z5pj5w5yc74153qm6vm076637"; depends=[checkmate R6 Rcpp]; }; setRNG = derive2 { name="setRNG"; version="2013.9-1"; sha256="02198cikj769yc32v8m2qrv5c01l2fxmx61l77m5ysm0hab3j6hs"; depends=[]; }; sets = derive2 { name="sets"; version="1.0-18"; sha256="16v7650p47khqrbbw0z98llmwmmhswqmhri0n7nrfhdqwmby1lbl"; depends=[]; }; setter = derive2 { name="setter"; version="0.0-1"; sha256="10fwrx8yysp99rrkbnn3rbz79vyzr2h3p7zxxlqapw1k2lllp0r5"; depends=[assertive_base]; }; settings = derive2 { name="settings"; version="0.2.4"; sha256="092sv6nccm6p2d695l9w0zfi2xgymk12c8p8lhl9nb86mxrb3nry"; depends=[]; }; + sever = derive2 { name="sever"; version="0.0.4"; sha256="1wqmpn1i4kln0wcyxs8wcbary246fax0j454b22m07hi1fwr4mn8"; depends=[cli shiny]; }; severity = derive2 { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; }; - sf = derive2 { name="sf"; version="0.9-2"; sha256="01xplgy5nlwy3ajfch4h1ssa1xhm7q0jzscpz04dmvgqfzwhhdfh"; depends=[classInt DBI magrittr Rcpp units]; }; + sf = derive2 { name="sf"; version="0.9-5"; sha256="0c58asqrvz1pkdkb0lkzwz8cwb43pmxd39z0jp217hk7p7q3ngwf"; depends=[classInt DBI magrittr Rcpp units]; }; sfa = derive2 { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; }; sfadv = derive2 { name="sfadv"; version="1.0.1"; sha256="1rfpm6km5pckwhqgpvidm6qsj5sjdaqqj5b0sgvpslivfa4c80cr"; depends=[gmm minpack_lm]; }; sfc = derive2 { name="sfc"; version="0.1.0"; sha256="0cm4mfcfd9bhf2j5fppsihzrfipnldb6q3xradd88z9pwgrkfx2a"; depends=[dplyr sna tidyr triangle zoo]; }; sfdct = derive2 { name="sfdct"; version="0.0.6"; sha256="0ilh89mfwp1yqn44yn80vz1a6g65hryk6w87ngzvak3pd6jxq6aa"; depends=[dplyr RTriangle sf sp tibble]; }; - sfheaders = derive2 { name="sfheaders"; version="0.2.1"; sha256="0rkx7z10mrkqglxpyjz20y32hbidwpaws2k4hbx2g6a3by1qwddf"; depends=[Rcpp]; }; + sfheaders = derive2 { name="sfheaders"; version="0.2.2"; sha256="0dcpq5d2m49izwq9fnsd25gm95swmw2bns8ha9mq36c2s2x2nq0s"; depends=[Rcpp]; }; sfinx = derive2 { name="sfinx"; version="1.7.99"; sha256="14v47y00qwvc2s0vzjw19hwn85nzj8lna539c75qq6zkn6kir6va"; depends=[]; }; - sfsmisc = derive2 { name="sfsmisc"; version="1.1-6"; sha256="04fvjdab6vyyghyqy0abxvfbyr1myz6yib7ibwiyjw9yf7fjrcjp"; depends=[]; }; + sfsmisc = derive2 { name="sfsmisc"; version="1.1-7"; sha256="12g6m8sf17q3qmm133nm4fa296w5n5d9ly3fvb2nvc0w4llkif3l"; depends=[]; }; sft = derive2 { name="sft"; version="2.2-1"; sha256="0fxz64ba58n6ghfqsgq64n1c7qkvi8c3lsa86732mil9w71yxw33"; depends=[fda SuppDists]; }; sgPLS = derive2 { name="sgPLS"; version="1.7"; sha256="1jk2j1zn5vq82rcjflnk7g6y2q0v5jl14k804dmigqg013gbykql"; depends=[mixOmics mvtnorm]; }; sgd = derive2 { name="sgd"; version="1.1.1"; sha256="055khw3jr7kr8la3jpzq1q25gk0qcclkv7g0q1sylhyqq2qdriwb"; depends=[BH bigmemory ggplot2 MASS Rcpp RcppArmadillo]; }; @@ -13573,15 +14088,16 @@ in with self; { sgeostat = derive2 { name="sgeostat"; version="1.0-27"; sha256="1iq9p2jk8bpv1h853a1l91d5c5dxnhkk3cmkd01siqqvj04hv4vb"; depends=[]; }; sglOptim = derive2 { name="sglOptim"; version="1.3.8"; sha256="15bkkvgp9v9vsp65wps48g3c2fa0fj1025hbrziywq14j7wayyjr"; depends=[BH doParallel foreach Matrix Rcpp RcppArmadillo RcppProgress]; }; sglasso = derive2 { name="sglasso"; version="1.2.4"; sha256="0sdarn39857405ndmqyka5ksvwczb5ifl5aap96wpm625iz2a1pi"; depends=[igraph Matrix]; }; - sglg = derive2 { name="sglg"; version="0.1.5"; sha256="0b2lksn887h92y8l1gjmhm2pxzfn6kk0rjvyh9k2b1j4plkvp73b"; depends=[AdequacyModel Formula ggplot2 gridExtra moments robustloggamma ssym survival]; }; + sglg = derive2 { name="sglg"; version="0.1.6"; sha256="1cm6s32bvs0ysh9q3b1da438q0asa7a10zd3nbj0v1ycg8k7ghcm"; depends=[AdequacyModel Formula ggplot2 gridExtra moments pracma ssym survival]; }; sglr = derive2 { name="sglr"; version="0.7"; sha256="11gjbvq51xq7xbmpziyzwqfzf4avyxj2wpiz0kp4vfdj3v7p4fp9"; depends=[ggplot2 shiny]; }; sgmcmc = derive2 { name="sgmcmc"; version="0.2.5"; sha256="0lq79c7i6bklh8c63wx3k6h9mk8s1abbr0hc41drcm96bbbg0aal"; depends=[reticulate tensorflow]; }; sgmodel = derive2 { name="sgmodel"; version="0.1.1"; sha256="1i13vp91i8s61ylsyg0iij1sfclwif7v91slr2srl8ddz6lm23nx"; depends=[ggplot2 ramify Rtauchen]; }; sgof = derive2 { name="sgof"; version="2.3.2"; sha256="020kc6h9iw4qhb9pdi7wk8vcy54dp10x0z3nlq3gwwbj1l9izc44"; depends=[poibin]; }; + sgpv = derive2 { name="sgpv"; version="1.0.0"; sha256="14zcny43zz5ai63091pvc31x45nfjbps5p0vv2l1b5pjiwds2164"; depends=[]; }; sgr = derive2 { name="sgr"; version="1.3"; sha256="0zxmrbv3fyb686hcgfy2w1w2jffxf41ab8yc90dsgf931s9c55wn"; depends=[MASS]; }; sgt = derive2 { name="sgt"; version="2.0"; sha256="0qb3maj5idwafs40fpdfrwzkadnh5yg8fvfzfs51p9yy69kbmlkx"; depends=[numDeriv optimx]; }; shades = derive2 { name="shades"; version="1.4.0"; sha256="1zg95sjhrfvbdlfc387g9p0vnb8nb6agdk1mb3wq3kwkm2da0bqj"; depends=[]; }; - shadow = derive2 { name="shadow"; version="0.6.4.1"; sha256="1v04v9g6slcr6iagqy6xk061dilxcvmrxv9n7r8z5ag3cbivl9ab"; depends=[plyr raster rgeos sp]; }; + shadow = derive2 { name="shadow"; version="0.6.7"; sha256="062yp600a15pnc8r5b7bx0lbb2g3nyfjn07ayn189jl5jnhxip38"; depends=[raster rgeos sp]; }; shadowtext = derive2 { name="shadowtext"; version="0.0.7"; sha256="1s1ip8zfr684a3ld7hvf524bhn2j31k6d1wbhh1ni0flsggv2ckf"; depends=[ggplot2 scales]; }; shallot = derive2 { name="shallot"; version="0.4.9"; sha256="0zmai0h3xgdi1fmmfh7jcvzl5ibmj5c86p9rzfh3wdlyqrc3hz1a"; depends=[commonsMath rscala salso]; }; shape = derive2 { name="shape"; version="1.4.4"; sha256="0hadk3mapkhbh8xjkiz52vxdagmmgvm15xwpzb90ikw4giyipjzl"; depends=[]; }; @@ -13591,14 +14107,15 @@ in with self; { shapper = derive2 { name="shapper"; version="0.1.2"; sha256="0z2ad0hk1gwxbr4kqbk26lzl25hrcifcp92i3am5j6y0ys71dwsx"; depends=[ggplot2 reticulate]; }; shar = derive2 { name="shar"; version="1.1"; sha256="157b1pia21qygb7pqb97v8b3bklnfq40xf8y7wg6p2ixkab0ws6c"; depends=[classInt raster Rcpp spatstat]; }; sharpData = derive2 { name="sharpData"; version="1.2"; sha256="0pvaq8i1vrra3d0wf6yyqkbin0zgsd1kvdzh4bfnyps6pzn5k789"; depends=[KernSmooth quadprog]; }; - sharpeRratio = derive2 { name="sharpeRratio"; version="1.3"; sha256="1x8vskx0hgdkxwdsfpc82amhj2089g1wj0qsj6nkd0n4k78wv21x"; depends=[ghyp Rcpp]; }; + sharpeRratio = derive2 { name="sharpeRratio"; version="1.4.1"; sha256="1sh4lrgj3hmw0pfw5xvvfs2jd8f694vy3ad5krwz4rh76ywja7q0"; depends=[ghyp Rcpp]; }; sharpr2 = derive2 { name="sharpr2"; version="1.1.1.0"; sha256="1r7anfr296l5sbhgry6rb15hlca6mpcm24qssdzz9bckavyfvqgi"; depends=[Matrix mvtnorm]; }; sharpshootR = derive2 { name="sharpshootR"; version="1.6"; sha256="1kzgxg1w5ajirsif6pgdqyal4aidj6y0q29zhikds4pr9x5sqcs4"; depends=[ape aqp circular cluster curl digest e1071 Hmisc igraph lattice plyr RColorBrewer reshape2 scales soilDB sp stringi vegan]; }; sharx = derive2 { name="sharx"; version="1.0-5"; sha256="10sfjg6946jfk4051da0w1v89503av40wckqaabr12syf8kn0aw8"; depends=[dclone dcmle Formula]; }; - shazam = derive2 { name="shazam"; version="0.2.3"; sha256="1c466yl596vra4bg03spkhz7ybsymaz2yg04amqnal06cwnp32hz"; depends=[alakazam ape diptest doParallel dplyr foreach ggplot2 igraph iterators kedd KernSmooth lazyeval MASS progress rlang scales seqinr stringi tidyr]; }; + shazam = derive2 { name="shazam"; version="1.0.2"; sha256="0v4a2i4fgdj6r2hlrnnn53xm22w9py4psf75i8iyx6nlbbbfbn4q"; depends=[alakazam ape diptest doParallel dplyr foreach ggplot2 igraph iterators kedd KernSmooth lazyeval MASS progress rlang scales seqinr stringi tidyr tidyselect]; }; shelltrace = derive2 { name="shelltrace"; version="3.5.1"; sha256="1xgbavaa26185i6q3907ds3bzq4xrw027x1sw5vsybqrxdz04jiz"; depends=[bmp tiff xlsx]; }; shiftR = derive2 { name="shiftR"; version="1.5"; sha256="18y2qzqx8hd6yph1wnsq4ygm16pcdszynh174xsrxrhvx2h9mi4x"; depends=[]; }; - shiny = derive2 { name="shiny"; version="1.4.0.2"; sha256="0r70ynic4wi9cxizk2gg097mfjps3a17ngi763cs6rijs21sr9nw"; depends=[crayon digest fastmap htmltools httpuv jsonlite later mime promises R6 rlang sourcetools xtable]; }; + shinipsum = derive2 { name="shinipsum"; version="0.1.0"; sha256="0d94189hmg0bl8x0s8fpba5gcvb95sr9k9lbp3kk8482fc5h147n"; depends=[attempt DT dygraphs ggplot2 magrittr plotly]; }; + shiny = derive2 { name="shiny"; version="1.5.0"; sha256="17lf56s2ycnz0amw8r32wrfhxy9zimz5xdysxxbc52c38kx8pjr3"; depends=[commonmark crayon digest fastmap glue htmltools httpuv jsonlite later mime promises R6 rlang sourcetools withr xtable]; }; shiny_i18n = derive2 { name="shiny.i18n"; version="0.1.0"; sha256="15llwr4yrx6rlk32b92wcq3dn360y5cvy4mh2aqkza9ikcvlhcvv"; depends=[jsonlite yaml]; }; shiny_info = derive2 { name="shiny.info"; version="0.2.0"; sha256="162wvb02z5h1y7xgsyl6wv88zlfmbm1jlnz48f56fyybs54baw41"; depends=[git2r glue shiny]; }; shiny_router = derive2 { name="shiny.router"; version="0.1.1"; sha256="0biwni6bk39qafvsh8w32crlgm4hf8r9kwkmnlc3w5za2x2fja4c"; depends=[magrittr shiny]; }; @@ -13609,7 +14126,7 @@ in with self; { shinyDND = derive2 { name="shinyDND"; version="0.1.0"; sha256="0nkvz4hmjzmxlzj4vkjrdy8xlbxapg1amk180irgvwicqldi4jpm"; depends=[htmltools shiny]; }; shinyEffects = derive2 { name="shinyEffects"; version="0.1.0"; sha256="03fm2i1ydlp90w299nvz7dqs9724g0m2f0bc44ni8m2gz9cfpccs"; depends=[htmltools shiny shinydashboard]; }; shinyEventLogger = derive2 { name="shinyEventLogger"; version="0.1.1"; sha256="1piycfg9j0dg3fgq9f88gs7zvhldmrzn7ggy2ijbh6r7iwipwgdm"; depends=[bupaR jsonlite mongolite purrr R_utils shiny stringr]; }; - shinyFeedback = derive2 { name="shinyFeedback"; version="0.1.0"; sha256="01qp75c5dsvc4xs1id1yhn81gmjl0hnjz8msf8mkvf4ifqal563f"; depends=[digest shiny]; }; + shinyFeedback = derive2 { name="shinyFeedback"; version="0.2.0"; sha256="1sg7nrcf55vjkh289x10ln9xbjv5ybhf8g5j6b9vybgcm4blvwyr"; depends=[htmltools jsonlite shiny]; }; shinyFiles = derive2 { name="shinyFiles"; version="0.8.0"; sha256="0gwyx37f2r86cldsyknws9pafpj8g5mg3mchlyl9ymgnk5f4b88w"; depends=[fs htmltools jsonlite shiny tibble]; }; shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.2.0"; sha256="1n7c7dvvb9kqay2phcf0bkwi990x1cjl7js6pq05xx7rli5bc5h4"; depends=[dplyr heatmaply htmltools plotly readxl rmarkdown shiny xtable]; }; shinyKGode = derive2 { name="shinyKGode"; version="1.0.5"; sha256="004zwz4kqfijzvvwkq8v1gi25w1wrdlg8230g93w36gbi6cl2vk1"; depends=[ggplot2 gridExtra KGode mvtnorm pracma pspline reshape2 shiny shinyjs XML]; }; @@ -13617,51 +14134,57 @@ in with self; { shinyLP = derive2 { name="shinyLP"; version="1.1.2"; sha256="1sjcll10ciq6pj9h8c6ybjqp8763wc423hddlalcblxxpajf6avz"; depends=[shiny]; }; shinyML = derive2 { name="shinyML"; version="0.2.0"; sha256="1x7fshfq85cbaydhhqx1lcfybv6qlrc6rmajsbcvvnbnbp1m5ysb"; depends=[data_table dplyr DT dygraphs ggplot2 h2o plotly shiny shinycssloaders shinydashboard shinyWidgets sparklyr tidyr]; }; shinyMatrix = derive2 { name="shinyMatrix"; version="0.3.0"; sha256="0gakbwfrqyxbm946rgxk3xc4qh4i3631hg8q37058ji63bxqzadc"; depends=[jsonlite shiny]; }; - shinyMobile = derive2 { name="shinyMobile"; version="0.1.0"; sha256="1jk4dpg78qxpsqnj44ia3z668bhf8mfziiz8v4zp7mmpp7x5447b"; depends=[htmltools jsonlite magrittr shiny]; }; + shinyMobile = derive2 { name="shinyMobile"; version="0.7.0"; sha256="1yrqwrz8ml6wssk0zi8wr4cpmff2d1g3msx0sv8k6mzyknl9d489"; depends=[htmltools jsonlite magrittr shiny]; }; shinyMolBio = derive2 { name="shinyMolBio"; version="0.2"; sha256="09lq5pvis450il1agcq5n9cilnq84rfv08w2dz1d0bbq1qgrgnvg"; depends=[checkmate dplyr plotly purrr RColorBrewer RDML shiny stringr whisker]; }; shinyNotes = derive2 { name="shinyNotes"; version="0.0.1"; sha256="1l0nw6xac410109jrr88a62a5fhv6h6xaql19bp0h8qxyc2fppjh"; depends=[DBI dbplyr dplyr magrittr RSQLite shiny shinyjs shinyWidgets stringr]; }; shinyRGL = derive2 { name="shinyRGL"; version="0.1.0"; sha256="07llg1yg5vmsp89jk60ly695zvxky6n06ar77mjxzlyc294akwmy"; depends=[rgl shiny]; }; shinySIR = derive2 { name="shinySIR"; version="0.1.1"; sha256="0m8ff5535hy5b363l4xkrdsm3m7mnfdb23h2wgqmysdv4af1gm2i"; depends=[deSolve dplyr ggplot2 shiny tidyr]; }; + shinySearchbar = derive2 { name="shinySearchbar"; version="1.0.0"; sha256="1v80380vym31aw0i1ghwlbdi2xkf3n59w2as62ywqi79025x3w6y"; depends=[jsonlite shiny]; }; shinyShortcut = derive2 { name="shinyShortcut"; version="0.1.0"; sha256="101wz9s4rk7fbaqgm0r2v3v8za20vdxwq4vhkz8xr7y5pr65sxiq"; depends=[]; }; shinyTime = derive2 { name="shinyTime"; version="1.0.1"; sha256="1d830wf7d5ki7frbr1vgy9d0vllyfcylq7pfkspjkz64b2xfhah3"; depends=[htmltools shiny]; }; shinyTree = derive2 { name="shinyTree"; version="0.2.7"; sha256="0jfx2capckv7hf2yx3fn8i4rcmhi222ah91jnmhg497x8wgz31s3"; depends=[htmlwidgets jsonlite promises shiny stringr]; }; - shinyWidgets = derive2 { name="shinyWidgets"; version="0.5.1"; sha256="1p56qfgj5y0rzyqj889hmbl7k6gwyxc58rzss9y2vav9d3jgsrr8"; depends=[htmltools jsonlite scales shiny]; }; + shinyWidgets = derive2 { name="shinyWidgets"; version="0.5.3"; sha256="16nbmyr1pz6splv7z56ampmxilg5qizzagg853pwh10ykdj8bczv"; depends=[htmltools jsonlite shiny]; }; shinyaframe = derive2 { name="shinyaframe"; version="1.0.1"; sha256="1flhgsm4q7p5acb41v73pf8ni92y9dwdppxjb9czlz1sxwf03p1s"; depends=[htmltools htmlwidgets shiny]; }; - shinyalert = derive2 { name="shinyalert"; version="1.0"; sha256="0ngmpbzw6fw1gs6sv9m3xv2c9bmrxg0bs6lnvxn8hm8cwr4440xi"; depends=[digest shiny]; }; + shinyalert = derive2 { name="shinyalert"; version="1.1"; sha256="1pnvdwxpx05srll61l8af4b1l5kpcw4wmvjiiz14gsx3baflnwxm"; depends=[digest shiny]; }; shinyanimate = derive2 { name="shinyanimate"; version="0.3.0"; sha256="0vshid5mfq006cprjj61d0g7ajyc3plc66x55c5jjmijwbp6pw7a"; depends=[shiny]; }; shinybootstrap2 = derive2 { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; }; - shinybrms = derive2 { name="shinybrms"; version="1.0.1"; sha256="1ngm8ryfppmdk7l46iv4a6gvz35l5z1rrv89dlg1cknam4zgyvc1"; depends=[brms shiny]; }; + shinybrms = derive2 { name="shinybrms"; version="1.3.0"; sha256="1jkwwfls85n10hrsx6nlif8zbnxvvs4hmd6lr82gcqk4qclxy24k"; depends=[brms rstan shiny]; }; shinybusy = derive2 { name="shinybusy"; version="0.2.0"; sha256="1zhi4nfnwwxn25r47fa8c5dq0wfvxmmdzrr8vfiq3qjj46bi1alf"; depends=[htmltools htmlwidgets jsonlite shiny]; }; - shinycssloaders = derive2 { name="shinycssloaders"; version="0.3"; sha256="1gzq1lhcnhqd145ys3ixf0l13l560fiqr2sc3m2nrijwxlgcw54d"; depends=[digest glue shiny]; }; + shinycssloaders = derive2 { name="shinycssloaders"; version="1.0.0"; sha256="0r3xm273lhdhzbs2mkgw1m2kwb7z1dh1pzya8yxy5vacda1l2ikl"; depends=[digest glue shiny]; }; shinycustomloader = derive2 { name="shinycustomloader"; version="0.9.0"; sha256="1klx71vr26g0gjf6hbiia1qidqii5d467i1sdjvlrg1hxdcggqff"; depends=[glue shiny]; }; shinydashboard = derive2 { name="shinydashboard"; version="0.7.1"; sha256="0khac8b27q3swdw07kl609hm0fjfjsjv591b388q99mqqr2rk92i"; depends=[htmltools promises shiny]; }; - shinydashboardPlus = derive2 { name="shinydashboardPlus"; version="0.7.0"; sha256="0hxg9gxravalfbrh05jixk9pz1qsq92pspysgx0vn2smgvp7rzlb"; depends=[htmltools shiny shinydashboard]; }; + shinydashboardPlus = derive2 { name="shinydashboardPlus"; version="0.7.5"; sha256="0g0cw07z7dlpc7q2abis0cdgwk6vlya0im5lxai82v21r60i5biy"; depends=[htmltools shiny shinydashboard]; }; + shinydisconnect = derive2 { name="shinydisconnect"; version="0.1.0"; sha256="14m83y1iv7qvs1hilc0d18q46qnsciflypgm4dsj7vlvh7ilpdvm"; depends=[checkmate glue htmltools shiny]; }; shinyglide = derive2 { name="shinyglide"; version="0.1.2"; sha256="0i98k3gl83kfzp3vs1his05idhwj1n0bw98ik7d62cgn4rqi6ar4"; depends=[htmltools shiny]; }; shinyhelper = derive2 { name="shinyhelper"; version="0.3.2"; sha256="1c4hvf19j3yyh8r12nx85ldkxs89g98q74csnqs5ml5l79a65vgp"; depends=[markdown shiny]; }; - shinyhttr = derive2 { name="shinyhttr"; version="1.0.0"; sha256="1l02g0qgvycwpfr6wl7svnms128fhlzbn9p7i4mr7ghgsd5qr58a"; depends=[shinyWidgets]; }; + shinyhttr = derive2 { name="shinyhttr"; version="1.1.0"; sha256="1snrl7bg1bc5jxqs1c5a2ir6qnf1nq576aigk19k0ms4gb9hh66m"; depends=[httr shinyWidgets]; }; shinyjqui = derive2 { name="shinyjqui"; version="0.3.3"; sha256="0n4ijxmkp8x6dwrsxwvx0zgd8b5129cmn6q6rrav38v1q5k8889x"; depends=[htmltools htmlwidgets jsonlite shiny]; }; shinyjs = derive2 { name="shinyjs"; version="1.1"; sha256="14k8y313ppj23m9rhlk8jc94x6sbn3qrsnx6xrijiyv8m8dii1l9"; depends=[digest htmltools jsonlite shiny]; }; shinyloadtest = derive2 { name="shinyloadtest"; version="1.0.1"; sha256="0k9b57wm2cv78qf9qryqr1s0p7gsncn8axd285f6rrayg4czb40l"; depends=[curl dplyr getPass ggplot2 glue gtable htmltools httpuv jsonlite lubridate magrittr progress R6 readr rlang rmarkdown scales stringr svglite tibble websocket xml2]; }; shinylogs = derive2 { name="shinylogs"; version="0.1.7"; sha256="1b4p0g1vf9wn643rybf382mw6mrrl49qsykh7npa3agcarwznmgr"; depends=[anytime bit64 data_table DBI digest htmltools jsonlite nanotime RSQLite shiny]; }; shinymanager = derive2 { name="shinymanager"; version="1.0.200"; sha256="00dvzcpba4awmdgy8wcn8h7qdc8mdrfaq3kp28h509xn3gax02wn"; depends=[billboarder DBI DT htmltools openssl R_utils R6 RSQLite shiny]; }; - shinymaterial = derive2 { name="shinymaterial"; version="1.0.1"; sha256="1vmbc5g55d3nsz18r2s2z5wgm2yrxygnyarsfhkqf3vyj8vndglw"; depends=[jsonlite shiny]; }; + shinymaterial = derive2 { name="shinymaterial"; version="1.1.0"; sha256="1xrbwrw3h1lqqgbfpan6ijddglknc9akxi11yvviz29lxlfphjj8"; depends=[jsonlite sass shiny]; }; + shinyobjects = derive2 { name="shinyobjects"; version="0.2.0"; sha256="0fg5gyssia2fqar635vrqgfwpfrk4pqachsgg10y13ljp09lcdm3"; depends=[dplyr glue knitr magrittr pander purrr readr rlang rstudioapi shiny stringr styler tibble tidyr]; }; shinypanels = derive2 { name="shinypanels"; version="0.5.0"; sha256="1rslz9wl3gx11dm6il77j4k5swxvcfy5mf0zffbs4zk8xjgpzzj6"; depends=[glue htmltools shiny shinyjs]; }; shinyr = derive2 { name="shinyr"; version="0.2.6"; sha256="16bknhab23by0h1b6c9q6rzyzyqnrcjhpsgw0gv427jycap9b0vv"; depends=[caret corrplot DMwR dplyr e1071 knitr nnet plotly randomForest RColorBrewer shiny shinydashboard tm wordcloud]; }; shinyrecap = derive2 { name="shinyrecap"; version="0.1.0"; sha256="1mic7azxz2in67g3a2ir550w8psh6kc75p6hja6m62a0yy7j2n92"; depends=[CARE1 coda conting dga future ggplot2 ipc LCMCR promises Rcapture reshape shiny shinycssloaders testthat]; }; + shinyrecipes = derive2 { name="shinyrecipes"; version="0.1.0"; sha256="1b4l27qsl1lpssh3jv1pqmw2mq8hanfj0m269yp5618nd5nxd2ck"; depends=[dplyr DT esquisse miniUI purrr recipes rstudioapi shiny shinyglide shinyWidgets sortable stringr tidyr]; }; + shinyreforms = derive2 { name="shinyreforms"; version="0.0.1"; sha256="1g1blc57c6zkca0m52bqkw8jwgpplabns07x1cwkk46dmv6sgqci"; depends=[htmltools R6 shiny]; }; + shinyservicebot = derive2 { name="shinyservicebot"; version="0.1.0"; sha256="18xbggiai6ssyl3q0nqhnszxb7zlbffaw0iy3r7vbzswzqx522la"; depends=[digest htmltools htmlwidgets shiny]; }; shinystan = derive2 { name="shinystan"; version="2.5.0"; sha256="18alf5kiqw7y2l6m5nxxizwc2znsf9frxfsqhvgcad8hld9cbya5"; depends=[bayesplot colourpicker DT dygraphs ggplot2 gridExtra gtools markdown reshape2 rsconnect rstan shiny shinyjs shinythemes threejs xtable xts]; }; - shinytest = derive2 { name="shinytest"; version="1.3.1"; sha256="1qn46kgqxfbfimghy5d200rmxpmbp7ckl7dm82m4bnrsf9ivzlgg"; depends=[assertthat callr crayon debugme digest htmlwidgets httpuv httr jsonlite parsedate pingr R6 rematch rstudioapi shiny testthat webdriver withr]; }; + shinytest = derive2 { name="shinytest"; version="1.4.0"; sha256="1kgj6izhj385vlw59agdgq1knvjyaawpghsnfmbixsmlzfr3jpzn"; depends=[assertthat callr crayon debugme digest htmlwidgets httpuv httr jsonlite parsedate pingr R6 rematch rstudioapi shiny testthat webdriver withr]; }; shinythemes = derive2 { name="shinythemes"; version="1.1.2"; sha256="12miz44n2zxfswnia7p8dirxj3miw0aqn4pkx2111ikz67ax84rf"; depends=[shiny]; }; shinytoastr = derive2 { name="shinytoastr"; version="2.1.1"; sha256="01j2z4gf1wxblrjayykwxdr2s8394i7k930x8g4hmrj7c9pv264n"; depends=[shiny]; }; shinyypr = derive2 { name="shinyypr"; version="0.0.2"; sha256="1k6jsw6gnpwk90hkpa9grki0b68cab57vbd0h6ldjqr11giwcz8z"; depends=[bsplus chk dplyr DT ggplot2 lifecycle magrittr purrr readr shiny shinyjs waiter ypr]; }; - shipunov = derive2 { name="shipunov"; version="1.7"; sha256="0sq2xk1dsw0jca9lg0j8qypfzxzzw8lfn3ldgcpyn3wmhyg2w1xc"; depends=[]; }; + shipunov = derive2 { name="shipunov"; version="1.11"; sha256="00kd971ip0j7ind53qsm3vbdd6lffz8zwa4jfnivn24z9asrkama"; depends=[PBSmapping]; }; shock = derive2 { name="shock"; version="1.0"; sha256="11m52al591xjznl62q1waxsg5m1a1afmd0yqcc5zsjlrplykg4lp"; depends=[capushe GGMselect glasso igraph mvtnorm]; }; shopifyr = derive2 { name="shopifyr"; version="1.0.0"; sha256="05hih1v5vvr7vmwarizsdx8517g74s96fdsz3klcz3g12idx1nqn"; depends=[curl jsonlite R6]; }; shortcuts = derive2 { name="shortcuts"; version="1.4.0"; sha256="0y77napfz1v3s667cmyn8357xg5lncbw1hc3hm5kra6nalhq1jps"; depends=[rstudioapi]; }; - shorts = derive2 { name="shorts"; version="0.0.1"; sha256="17dsdf5byby0whpfv14dq22q51q1icfcdc4ww6hfjvbkfw23vy71"; depends=[LambertW nlme]; }; + shorts = derive2 { name="shorts"; version="1.1.0"; sha256="1nnzi4im8qv45zyrsdp8la68rm98fmvral57kvpkbbs8kasa9mda"; depends=[LambertW nlme]; }; shotGroups = derive2 { name="shotGroups"; version="0.7.5.1"; sha256="0il6hlv2hnfx5rmj3vk3q9p24xqii77z6hdz5fsgyh4i3kgcyrjy"; depends=[boot coin CompQuadForm KernSmooth robustbase]; }; showimage = derive2 { name="showimage"; version="1.0.0"; sha256="1c0x3iqjdjsz3cdhc02b3qm2pwxjr1q2k87jwvxj9lnzzw81f1pl"; depends=[png]; }; - showtext = derive2 { name="showtext"; version="0.7-1"; sha256="0a5gg72bfrc7wm0phj1aflj1wc08kfi81ac32na6ya9s2ivyimw5"; depends=[showtextdb sysfonts]; }; - showtextdb = derive2 { name="showtextdb"; version="2.0"; sha256="1qwwj9x2jvadvwn60h75k99c9xi7yhqjsgaakahz5paxgj583bsh"; depends=[sysfonts]; }; + showtext = derive2 { name="showtext"; version="0.9"; sha256="11fx2vv8jlvcnybh18y7v4bn2c67aqsqwfq7y8dpywbwr4zg8jid"; depends=[showtextdb sysfonts]; }; + showtextdb = derive2 { name="showtextdb"; version="3.0"; sha256="0hlnc3fhgrdkd46n7hb6id0gg1v0bf8s4679nrr7rchyp455szq2"; depends=[sysfonts]; }; shp2graph = derive2 { name="shp2graph"; version="0-5"; sha256="1l9mg98hkb0bvr5dzd2p26g8mw5hqjxrym2gmbm10kyapvccfk56"; depends=[igraph maptools sp]; }; shrink = derive2 { name="shrink"; version="1.2.1"; sha256="0pd967wsys8fd7gyvr9y08km118yamfk5c1a1i2k8nr2ifpqmy0w"; depends=[MASS mfp rms survival]; }; shrinkTVP = derive2 { name="shrinkTVP"; version="1.1.1"; sha256="0dl6dpbjq6ykh813344qs3n6kp8xgif354wjz7lzv1ik4kl3a71s"; depends=[coda GIGrvg Rcpp RcppArmadillo RcppProgress stochvol zoo]; }; @@ -13681,33 +14204,34 @@ in with self; { sigQC = derive2 { name="sigQC"; version="0.1.21"; sha256="0794xvkz4fd81gqqpxzn5njv3d34nfxy0jl5zpixlnz0ap4c9vhx"; depends=[biclust circlize class cluster ComplexHeatmap fmsb gplots gridGraphics GSVA KernSmooth lattice MASS mclust moments nnet RankProd]; }; sigclust = derive2 { name="sigclust"; version="1.1.0"; sha256="0151v7lr4n4yyn93j0s06gzc9jh9xhdgvfw6kvpfy24jl6wdii7g"; depends=[]; }; sigmaNet = derive2 { name="sigmaNet"; version="1.1.0"; sha256="1i0xikwad9kiyrqxi1klkc4h4hyqfkxr388sw4mrx9pswfpbv3xr"; depends=[htmlwidgets igraph jsonlite RColorBrewer]; }; - sigmajs = derive2 { name="sigmajs"; version="0.1.3"; sha256="017cpdxymh4n8is10akkbpdhakc1jdc1j5lw0pgg2jj5s3bl1rav"; depends=[crosstalk dplyr htmltools htmlwidgets igraph jsonlite magrittr purrr scales shiny]; }; - sigminer = derive2 { name="sigminer"; version="1.0.0"; sha256="1c2cckb7l87jp30c3j4c23yifaly9fqb58d00v9myjcbsrc9xhrx"; depends=[circlize cluster cowplot data_table doFuture dplyr flexmix foreach furrr future GenomicRanges ggalluvial ggplot2 ggplotify ggpubr IRanges lsei maftools magrittr NMF patchwork purrr RColorBrewer rlang tibble tidyr]; }; + sigmajs = derive2 { name="sigmajs"; version="0.1.5"; sha256="1d26llpgnj687b8rwgbyhw88zakp334n4a9gabf72qwrg4awm1v5"; depends=[crosstalk dplyr htmltools htmlwidgets igraph jsonlite magrittr purrr scales shiny]; }; + sigminer = derive2 { name="sigminer"; version="1.0.7"; sha256="0ncxlj4z8hds7h4rj0nw6rvgjacgkqkhxh6y8m39rwalmdny6mlx"; depends=[cli cowplot data_table dplyr foreach furrr future ggplot2 ggpubr maftools magrittr NMF purrr rlang tidyr]; }; sigmoid = derive2 { name="sigmoid"; version="0.3.0"; sha256="1sa6nmip3fizdk3r47pvx0h3qldn267arpmid0wa1pb7k5j2g682"; depends=[]; }; signal = derive2 { name="signal"; version="0.7-6"; sha256="1vsxramz5qd9q9s3vlqzmfdpmwl2rhlb2n904zw6f0fg0xxjfq3b"; depends=[MASS]; }; signalHsmm = derive2 { name="signalHsmm"; version="1.5"; sha256="1d4v6cbvcbi8pb5zmn58s01h3jb0kv7yr7qvcnx4p2v82knvhik7"; depends=[Rcpp seqinr shiny]; }; signmedian_test = derive2 { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; }; - signnet = derive2 { name="signnet"; version="0.5.2"; sha256="0lhxp87m7c898xvdhzca6lm625cnh3rvbqbbz42f1lv388ik4sw2"; depends=[igraph Matrix Rcpp RcppArmadillo]; }; + signnet = derive2 { name="signnet"; version="0.6.0"; sha256="0bwa58svkgf2z06m8kg4g37px57l1kmhx84ps5qshl4699a3v1gx"; depends=[igraph Matrix Rcpp RcppArmadillo]; }; signs = derive2 { name="signs"; version="0.1.2"; sha256="0dzf5pydvs93rvj6idw9l2asv1bxwz20df7qis2db84hfww2kc6m"; depends=[rlang scales]; }; sigora = derive2 { name="sigora"; version="3.0.5"; sha256="1240q42kpb4l1idanywzal7c85kp3ncdl5m2irh8qs5xrs02gdc7"; depends=[]; }; - sigr = derive2 { name="sigr"; version="1.0.6"; sha256="01crx8r9bcq1kwlq66vypnv1r48fp3hbl06ykd8g2k5zm06w0yyi"; depends=[wrapr]; }; + sigr = derive2 { name="sigr"; version="1.0.8"; sha256="04a68rd5ywxbl4dca026criqr314y367lh6i7k7qnrbsgzhgsb4l"; depends=[wrapr]; }; siland = derive2 { name="siland"; version="2.0"; sha256="0g06adzydvrw7vq2a78m4lw1vc2k28mp2pj5q20629yknpv54ffr"; depends=[fasterize ggforce ggplot2 lme4 raster reshape2 sf sp]; }; - silicate = derive2 { name="silicate"; version="0.4.0"; sha256="1bvwdrmnrcnyq21sz50g9aksqhd5xkcqhd305mr606mgm183x5rn"; depends=[crsmeta decido dplyr gibble gridBase magrittr purrr rlang tibble unjoin]; }; + silicate = derive2 { name="silicate"; version="0.6.1"; sha256="17jrnbh578l5dlp9ndxlxa7q91x3cwk3czix4613vgkrkdjjqwld"; depends=[crsmeta decido dplyr gibble gridBase magrittr purrr rlang tibble unjoin]; }; sim1000G = derive2 { name="sim1000G"; version="1.40"; sha256="1avq6xfc34izavvp9vb5ccc2b9nc4m7cwr06ygnsmpgwi5nswbb8"; depends=[hapsim MASS readr stringr]; }; sim2Dpredictr = derive2 { name="sim2Dpredictr"; version="0.1.0"; sha256="0q1l75h1dcxnd60lcmf4sny1ywidfmm0yv9ylkb3yc13v469167i"; depends=[car dplyr ggplot2 magrittr MASS matrixcalc Rdpack spam tibble tidyverse]; }; simEd = derive2 { name="simEd"; version="1.0.3"; sha256="1yq0qblrz0zddx682rzwdaa0k0r223i123la7wbp73spnn38g4br"; depends=[rstream]; }; simExam = derive2 { name="simExam"; version="1.0.0"; sha256="10p3y67cli5is2gj23cjy8y7zpbnn2jbxmfiq01ls0hc1jind82w"; depends=[Matrix msm]; }; simFrame = derive2 { name="simFrame"; version="0.5.3"; sha256="154d4k6x074ib813dp42l5l8v81x9bq2c8q0p5mwm63pj0rgf5f3"; depends=[lattice Rcpp]; }; simIReff = derive2 { name="simIReff"; version="1.0"; sha256="0yi43splda8chnh4bq5x6chbrl5c0y9sv1k2m31763da0czayall"; depends=[bde extraDistr ks MASS np rvinecopulib truncnorm]; }; + simITS = derive2 { name="simITS"; version="0.1.1"; sha256="0b62lvknfqli6ki4w360b1ih9nsm6pinaqskgra6vl2nzsim3sal"; depends=[dplyr rlang]; }; simLife = derive2 { name="simLife"; version="0.5.2"; sha256="1dhrjszfgxr0j4dkc2bwykyj515ji5rkb572nmnyjgkyi652j01v"; depends=[splancs]; }; simMP = derive2 { name="simMP"; version="0.17.3"; sha256="1pzg79dd08ds3pfzxnk9h95gaibicv00mnm0jb4i8v5is4gzrdhr"; depends=[Biostrings BSgenome doParallel foreach GenomeInfoDb GenomicRanges IRanges XVector]; }; simMSM = derive2 { name="simMSM"; version="1.1.41"; sha256="04icijrdc269b4hwbdl3qz2lyxcxx6z63y2wbak1884spn6bzbs8"; depends=[mvna survival]; }; simPATHy = derive2 { name="simPATHy"; version="0.4"; sha256="1blvgaadp7iz0mcgax2xc8wa7aa9f82q09qym1wl8xdv01m29b80"; depends=[ggm graph gRbase htmlwidgets igraph mvtnorm qpgraph R_utils shiny shinydashboard]; }; - simPH = derive2 { name="simPH"; version="1.3.11"; sha256="0dlig46jggw39siigblvm2qn9gds5yzm2rv8sdcga75157d7wh1r"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv quadprog stringr survival]; }; + simPH = derive2 { name="simPH"; version="1.3.12"; sha256="08hyv1v197cdysrdxi9x9944hmypvw7zxw2f7qdd870sibsdxjda"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv quadprog stringr survival]; }; simPop = derive2 { name="simPop"; version="1.2.0"; sha256="05f1azdz202bap4pkqxiacj7wqkbmw3naw6p7xgmvx8nlh5xl40h"; depends=[colorspace data_table doParallel e1071 EnvStats fitdistrplus foreach laeken lattice MASS nnet party plyr ranger Rcpp RcppArmadillo vcd VIM wrswoR]; }; simSummary = derive2 { name="simSummary"; version="0.1.0"; sha256="1ay2aq6ajf1rf6d0ag3qghxpwj0f8b3fhpr2k0imzmpbyag1i3gj"; depends=[abind gdata svUnit]; }; simTargetCov = derive2 { name="simTargetCov"; version="1.0.1"; sha256="0gdqqwg9i2hga6l4s5x7wbbsm20b3sgwrci1g6hc04x1h9aawiw2"; depends=[MASS]; }; - simTool = derive2 { name="simTool"; version="1.1.5"; sha256="09pvrcjqkgrrvr1qdkc9s1s880x5zmmcfj7wrl22lanpfkng5x6f"; depends=[dplyr purrr tibble tidyr]; }; + simTool = derive2 { name="simTool"; version="1.1.6"; sha256="141bxad531s76pqlqxyzncaxf1z874vn5fl1263yg9qszi1cblzs"; depends=[dplyr purrr tibble tidyr vctrs]; }; simba = derive2 { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; }; simboot = derive2 { name="simboot"; version="0.2-6"; sha256="0bgibrqb9j62p1chldi1lvdsgc6sgsr7afyq4lvyrc2h861f3j9d"; depends=[boot mvtnorm]; }; simcdm = derive2 { name="simcdm"; version="0.1.1"; sha256="1qzxxpz3nvqf9801k6zgphv6vd8alf2sf6cvzggk7cz6x5jc3w1r"; depends=[Rcpp RcppArmadillo]; }; @@ -13717,29 +14241,29 @@ in with self; { simest = derive2 { name="simest"; version="0.4"; sha256="1wp08dkbshn5parq69d7iizp4g16qzpdim37kcg09pgsc3aghwaj"; depends=[cobs nnls]; }; simex = derive2 { name="simex"; version="1.8"; sha256="1849wayygyqv0fh1i2qva7ggh2yah2nn0sgbcy9pldxrjq8q9iw0"; depends=[]; }; simexaft = derive2 { name="simexaft"; version="1.0.7.1"; sha256="0n3n2g07pnpcqhbrjf78lbvqvc136g7jxlx6q27vnk96kwizh3f1"; depends=[mvtnorm survival]; }; - simfinR = derive2 { name="simfinR"; version="0.2.1"; sha256="1png4cz92vnql2j2b5dlji8b6662ildj05lj1y1bw8xawv9i1i9b"; depends=[crayon dplyr jsonlite lubridate magrittr memoise purrr]; }; - simglm = derive2 { name="simglm"; version="0.7.4"; sha256="0lgzbcfqqw94jib6vxl2cv8xcnjjikvdy8qlhq874g0h8spg0l5i"; depends=[broom dplyr future_apply Matrix purrr rlang]; }; + simfinR = derive2 { name="simfinR"; version="0.2.2"; sha256="16ran6br8n7b7f74a7ayzhkmnhak5z1cwli3s1b1mzdii937k8bb"; depends=[crayon dplyr jsonlite lubridate magrittr memoise purrr]; }; + simglm = derive2 { name="simglm"; version="0.8.0"; sha256="18phhsq5i9xsx4m0qml8jls9zlcnf3nifn24a7mdbr8l7z1ykf04"; depends=[broom dplyr future_apply Matrix purrr rlang]; }; simhelpers = derive2 { name="simhelpers"; version="0.1.0"; sha256="0imrp8zqdpyl466fywkjr4g3h9jzxfk96xrw8prlsvw1xlg6qrmm"; depends=[dplyr furrr future magrittr purrr Rdpack rlang rstudioapi tibble tidyr]; }; - simmer = derive2 { name="simmer"; version="4.4.1"; sha256="1w7mzs7z0pczfdwn4xn3rq5jvymbhhz6sv1rdhcq71m3qymicdi2"; depends=[BH codetools magrittr Rcpp]; }; + simmer = derive2 { name="simmer"; version="4.4.2"; sha256="1zffksln9d77h59lbbqk8lbrjlhvic7ianw1912vj6bsvh5k6jjy"; depends=[BH codetools magrittr Rcpp]; }; simmer_bricks = derive2 { name="simmer.bricks"; version="0.2.1"; sha256="1s73mfmpjz91n932kjk50aai5j3p1sjibq73yxrjdhlyhiy4d8lp"; depends=[simmer]; }; - simmer_plot = derive2 { name="simmer.plot"; version="0.1.15"; sha256="0g13d6qw6cl7bzmpkckiswvg9n4mrrdbs195r3pyljaw5c5bmvhp"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; }; + simmer_plot = derive2 { name="simmer.plot"; version="0.1.16"; sha256="15snsxbljapk1br3psd6ypwa34a6x57zrblgpjyihpaivpxcz7m6"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; }; simml = derive2 { name="simml"; version="0.1.0"; sha256="0j3vv3kp8rl4an6r0vzzn6syzi9h058v9040pshz0hldkhi21pby"; depends=[mgcv plyr]; }; - simmr = derive2 { name="simmr"; version="0.4.1"; sha256="0903fh8vhl7r9cspanzkrn23kq68dkxhn01bjhyhf3c8wc9zfdy5"; depends=[bayesplot boot compositions ggplot2 MASS R2jags reshape2 viridis]; }; + simmr = derive2 { name="simmr"; version="0.4.2"; sha256="0mvckg5jz3fhjrpr97zn4jrcv3pxay53f5cpqy0d92h2lqpsgaff"; depends=[bayesplot boot compositions ggplot2 MASS R2jags reshape2 viridis]; }; + simode = derive2 { name="simode"; version="1.2.0"; sha256="0wlnd01xfdqvjfvmkhkj6nvkrnv5ghjv4md5nhaqsjc8bycawyl0"; depends=[deSolve pracma quadprog]; }; simone = derive2 { name="simone"; version="1.0-4"; sha256="09d8kdg2wxpmjgcn4dk6yqr6nmf7mzqqi6x1rz3fv7qknja6l1xi"; depends=[blockmodels]; }; simpleCache = derive2 { name="simpleCache"; version="0.4.1"; sha256="1prhahphyb4dg9qv813ahpwfngmr9blirb97pvypc5npzvahj5lv"; depends=[]; }; simpleNeural = derive2 { name="simpleNeural"; version="0.1.3"; sha256="01q04807qws870x1qhvlr3bp0dawy8q4bh00psakhln9j9dl1ljm"; depends=[]; }; - simplePHENOTYPES = derive2 { name="simplePHENOTYPES"; version="1.0.5"; sha256="02cr7yk379yilf53rv9s36g2gg1z5cq2qigy7lq31wcpb7vhjig3"; depends=[data_table gdsfmt lqmm mvtnorm SNPRelate]; }; + simplePHENOTYPES = derive2 { name="simplePHENOTYPES"; version="1.2.4"; sha256="08pkz6959zhfg7yd5qyfcwi4p4rzbq8gbm0jmkf15ynpica4kknj"; depends=[data_table gdsfmt lqmm mvtnorm SNPRelate]; }; simpleRCache = derive2 { name="simpleRCache"; version="0.3.2"; sha256="0ldmxa5rw1kcb24swnk8s471ww11jfbscynaahnnsi0zzqmhwirk"; depends=[digest]; }; simpleSetup = derive2 { name="simpleSetup"; version="0.1.0"; sha256="0rbzmixk76b3lgi9m7ijhcl6dha7wbbxfgwdhnp2y338zny6c6rm"; depends=[]; }; simpleboot = derive2 { name="simpleboot"; version="1.1-7"; sha256="0769dmrk8rw5v9598p7xlpawybwsdxnrqkxhavqpzy1vwg885575"; depends=[boot]; }; simplecolors = derive2 { name="simplecolors"; version="0.1.0"; sha256="08xsha7v9k55fqi9f49j2sh2yz8dm5g99rqcjfd1yrlw2mkcrq6a"; depends=[colorspace dplyr forcats ggplot2 magrittr stringr]; }; simplegraph = derive2 { name="simplegraph"; version="1.0.0"; sha256="1gcpbljp1fgaprxnmq23izf1h2x3p5dnxlylwqsnlcj50bvm46gq"; depends=[]; }; - simplevis = derive2 { name="simplevis"; version="1.1.0"; sha256="1kwsxa2w74z92z4a7a82nkc62jna9y9z718kasvp91h5f40mz0zr"; depends=[dplyr DT forcats ggplot2 janitor leaflet leaflet_extras leafpop lubridate magrittr plotly readr rgdal rlang rmarkdown scales sf shiny shinycssloaders stars stringr tibble tidyr viridis]; }; - simplexdesign = derive2 { name="simplexdesign"; version="0.1.0"; sha256="139c1c2vpn2rf0q7ldciii3x18f5r62x0l7i6hdk25qwr9sp08k8"; depends=[DiceDesign GGally ggplot2 progress Rfast]; }; + simplevis = derive2 { name="simplevis"; version="1.5.0"; sha256="05217g6y59xw53ncy7040jg45h0i0i8yjsv72fkpibc56lc5cn0q"; depends=[dplyr DT forcats ggplot2 htmltools janitor leaflet leaflet_extras leafpop lubridate magrittr plotly readr rgdal rlang rmarkdown scales sf shiny shinycssloaders stars stringr tibble tidyr viridis]; }; simplexreg = derive2 { name="simplexreg"; version="1.3"; sha256="1zkh00xbddhgz0qn0a5pj12n0hpx4f5kihpfj71x92pmxpzglcxh"; depends=[Formula plotrix]; }; simputation = derive2 { name="simputation"; version="0.2.4"; sha256="16adh97hfszvf934lf8mvwxvx71s7gwhzzhsbqz24zqik20pd6fq"; depends=[gower MASS rpart]; }; simr = derive2 { name="simr"; version="1.0.5"; sha256="1j5w93iliykfnpxl9kzh1rp6d3iy26ksj3j7yjl348yvplh0iyjl"; depends=[binom car iterators lme4 pbkrtest plotrix plyr RLRsim stringr]; }; - simrel = derive2 { name="simrel"; version="2.0"; sha256="1wshbnmq9yqh01f9mjvfhhr3d76dshkxmqchxk11v4yx4apd8b4z"; depends=[FrF2 ggplot2 gridExtra jsonlite magrittr miniUI purrr reshape2 rlang rstudioapi scales sfsmisc shiny testthat tibble tidyr]; }; + simrel = derive2 { name="simrel"; version="2.0.2"; sha256="192yp6njvq9l6yznjhf69da5z1vxl0q3398laimndwnvrpx73pcj"; depends=[FrF2 ggplot2 gridExtra jsonlite magrittr miniUI purrr reshape2 rlang rstudioapi scales sfsmisc shiny testthat tibble tidyr]; }; simsalapar = derive2 { name="simsalapar"; version="1.0-10"; sha256="1q7kh44xl7q48vpqbyrp85my6x97l4fqq36bry8vg3k5riihirzf"; depends=[colorspace gridBase sfsmisc]; }; simsem = derive2 { name="simsem"; version="0.5-15"; sha256="183l6pysssxyhgw3s5gd0319snmvh439cy4xwfdjdwpavb8rrj06"; depends=[lavaan]; }; simsl = derive2 { name="simsl"; version="0.1.0"; sha256="09d6k61c2m0n03xpqvig7310bpgddxl8vzfjgn6wbr21s73b9xis"; depends=[mgcv]; }; @@ -13752,9 +14276,11 @@ in with self; { simulator = derive2 { name="simulator"; version="0.2.0"; sha256="18x0c9bf9anbykq9f46fxnnx7g36bh01s4cdmrn7mdygs6ac9c8z"; depends=[magrittr]; }; simule = derive2 { name="simule"; version="1.3.0"; sha256="0jzyk1r2jfs7qivmy9x44c5bagy55jpy3hf0xpl9xnk409c3y2wd"; depends=[igraph lpSolve pcaPP]; }; sinaplot = derive2 { name="sinaplot"; version="1.1.0"; sha256="0zfq6l8wjvdj7rndsfyh0a2xjlxmn2ij1q50hg3xjfpwrjxcsck8"; depends=[plyr]; }; - sindyr = derive2 { name="sindyr"; version="0.2.2"; sha256="1clcn864p0kx1rlb9rr9gl2cjsyr5rrbvqd00rsf90vgq2p2aj8x"; depends=[arrangements crqa igraph matrixStats pracma]; }; + sindyr = derive2 { name="sindyr"; version="0.2.3"; sha256="0dk7zwj5hdr7fcxhdj9klml11sciyaj0v59dfgvnhhkxndwwdbrr"; depends=[arrangements crqa igraph matrixStats plot3D pracma]; }; sinew = derive2 { name="sinew"; version="0.3.8"; sha256="1ggx7wgmgnsv69nnc55mg9g7rzjv5m23sygz7x8q68pybmjr7fc1"; depends=[cli crayon miniUI rematch2 rstudioapi shiny sos stringi yaml]; }; + singleCellHaystack = derive2 { name="singleCellHaystack"; version="0.3.2"; sha256="1nzq7kz1vb3gra80hilmvdlyjy0qda60izrkqprr5bxn1iw8rdx0"; depends=[ggplot2 reshape2]; }; sinib = derive2 { name="sinib"; version="1.0.0"; sha256="08x2a5hn41vcsai3r36w1kgzka4ks53pkp6dxn90bsqh40ydb0db"; depends=[]; }; + sinx = derive2 { name="sinx"; version="0.0.13"; sha256="0699fy1jbi9a7xjmwph4cj833750bw0xg3zvdpn8dwvh6y42m552"; depends=[bookdownplus clipr cowsay crayon jsonlite multicolor pagedown rmsfact rosr xaringan]; }; siplab = derive2 { name="siplab"; version="1.4"; sha256="1kayskawq9dqwwmk17akl68xw9kwllkmh4i251gdqkfcz61j3bb4"; depends=[spatstat]; }; sirad = derive2 { name="sirad"; version="2.3-3"; sha256="0vhmk2fmq4797gj6c8803zw1ipmdxfvdfgi2bygzxbn5bqd4da2n"; depends=[raster zoo]; }; sirt = derive2 { name="sirt"; version="3.9-4"; sha256="1myj1dpmqzcyxhkyyvva3xwy1aq5d6l37zg9vhfnc3q4h1psc5hm"; depends=[CDM pbv Rcpp RcppArmadillo TAM]; }; @@ -13762,38 +14288,42 @@ in with self; { sisVIVE = derive2 { name="sisVIVE"; version="1.4"; sha256="1vh53irxgk8ahw52cdqbbm89dvmzyf54izg4lm8a3v92k5p6nzwz"; depends=[lars]; }; sisal = derive2 { name="sisal"; version="0.48"; sha256="1fh35ndra58dryw222ng7ys3gx1izyk5789k30lyd4n8wqy6sjjd"; depends=[boot digest lattice mgcv R_matlab R_methodsS3]; }; sismonr = derive2 { name="sismonr"; version="2.1.0"; sha256="1v4vfz6zc4f70fay8r9vaxj62pcp8gqnh4aczbqpym9874330vi9"; depends=[dplyr ggplot2 ggpubr igraph jsonlite magrittr rlang scales stringr tictoc tidyr truncnorm XR XRJulia]; }; + sistec = derive2 { name="sistec"; version="0.1.0"; sha256="1prxqfyngfi21mnrx1s648vk80wk2ivia0kq5kqywdrrdxa3zpam"; depends=[dplyr openxlsx rlang shiny stringr]; }; sitar = derive2 { name="sitar"; version="1.1.2"; sha256="0njnsamb9mrds3rjlwwv6sn980jl744mdp0b9d36sqws7wgnxrfq"; depends=[dplyr glue nlme purrr rlang rsample tibble tidyr]; }; + siteymlgen = derive2 { name="siteymlgen"; version="1.0.0"; sha256="1176fnf39ars5cdjvy5w2k6b92qv51hy86s71sl8ghr0lwdq9f59"; depends=[data_table dplyr lubridate magrittr purrr rlist rmarkdown stringr yaml ymlthis]; }; sitmo = derive2 { name="sitmo"; version="2.0.1"; sha256="0apdhwy3kxs39agsbvx5vn3xsgb22bf3jrwmr2cmqk9kmxbx740c"; depends=[Rcpp]; }; sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; sitree = derive2 { name="sitree"; version="0.1-7"; sha256="08yamivn2vxgrizh5gvvr9cn3cn1657r0p2nrkwbqljqrhmzi7qd"; depends=[data_table lattice latticeExtra]; }; sitreeE = derive2 { name="sitreeE"; version="0.0-5"; sha256="16m8w0rxb40pimzd06znqskz74jk4rrki4gjy8nk24r1zih2cjq1"; depends=[data_table sitree]; }; - sizeMat = derive2 { name="sizeMat"; version="1.1.1"; sha256="1afkc5mcih4zva70fifx65wjm5ndi80hvlq23dvfrmhk4z94nnlx"; depends=[MASS matrixStats MCMCpack]; }; - sjPlot = derive2 { name="sjPlot"; version="2.8.3"; sha256="0ip1rkjlhyf3axlc8qqss1qq1f0xrda890c1jmcbhm98wwjw264f"; depends=[bayestestR dplyr effectsize ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; + sizeMat = derive2 { name="sizeMat"; version="1.1.2"; sha256="1vbndadsn80ddrg471vp1qxf0gan38w6dkjk1p2npvfb47wdjj2h"; depends=[MASS matrixStats MCMCpack]; }; + sjPlot = derive2 { name="sjPlot"; version="2.8.4"; sha256="0b7k0mshkk8k26w11xbxkb5v0klhq279zn2xdz83cn8k791xkqyd"; depends=[bayestestR dplyr effectsize ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; sjdbc = derive2 { name="sjdbc"; version="1.6.0"; sha256="17ncgj2s2pjn3w3c1dgxv8g7y17h4p78iic86gsj2ahn0xpsmkcc"; depends=[rJava]; }; - sjlabelled = derive2 { name="sjlabelled"; version="1.1.3"; sha256="1amq7i9sxf0pkxhskqc53xq5wvc9rdxm7cxyb4b6xh6qsskjnlsj"; depends=[haven insight]; }; - sjmisc = derive2 { name="sjmisc"; version="2.8.4"; sha256="1ad7ca71w0v9ja4wb47aygczc987zz1lnjljhh2n497nzrpzzv64"; depends=[dplyr insight magrittr purrr rlang sjlabelled tidyselect]; }; - sjstats = derive2 { name="sjstats"; version="0.17.9"; sha256="0938ac6ixvkif07azd2msa8g3qnn9rabj6jg17almbysl83kg4nm"; depends=[bayestestR broom dplyr effectsize emmeans insight lme4 magrittr MASS modelr parameters performance purrr rlang sjlabelled sjmisc tidyr]; }; + sjlabelled = derive2 { name="sjlabelled"; version="1.1.6"; sha256="0xvb0yi7c7wiiqjbnbisyb2cjinm11i373jacfv1yzyc9cznzyzq"; depends=[insight]; }; + sjmisc = derive2 { name="sjmisc"; version="2.8.5"; sha256="0xl0s56d13bia89ai619rcr0fzbvc2k8f7hjxik4qp0g4v87zzlk"; depends=[dplyr insight magrittr purrr rlang sjlabelled tidyselect]; }; + sjstats = derive2 { name="sjstats"; version="0.18.0"; sha256="17b1fcrhgjw66qa8zk2jj1bvz3vp5bnjn3p4y1wsg5ng5nxq8jz0"; depends=[bayestestR broom dplyr effectsize emmeans insight lme4 magrittr MASS modelr parameters performance purrr rlang sjlabelled sjmisc tidyr]; }; skda = derive2 { name="skda"; version="0.1"; sha256="0a6mksr1d0j3pd0kz4jb6yh466gvl4fkrvgvnlmvivpv6b2gqs3q"; depends=[]; }; - skedastic = derive2 { name="skedastic"; version="0.1.0"; sha256="19jfsir1z7lv7h3085by9b638jzqgc9753aya21x3rvzq7hb3pr3"; depends=[broom car gmp het_test lmtest lubridate magrittr matrixcalc pracma Rdpack Rmpfr tibble tseries]; }; + skedastic = derive2 { name="skedastic"; version="1.0.0"; sha256="11bz8ds8dgfn5dmr7psyszylhnz0why8ika327yk1v1j9z841k1q"; depends=[arrangements bazar berryFunctions boot broom CompQuadForm cubature data_table expm gmp magrittr MASS mvtnorm plm pracma qpdf quantreg Rdpack Rmpfr shiny tibble]; }; skeletor = derive2 { name="skeletor"; version="1.0.4"; sha256="1jfbfbkjx8mdwamsrkhvcnyn470in702vgcyw3g2dbgs84gl29q8"; depends=[]; }; skellam = derive2 { name="skellam"; version="0.2.0"; sha256="0r5wbs5h7xc3k2vjxd4axwnxr9cmwm008fcyj1vyixkg8fa680gx"; depends=[]; }; - skewlmm = derive2 { name="skewlmm"; version="0.1.0"; sha256="158nxycjg8bmx653nc57gdw02hf5szqbl2hgcb10yrmpssk15qbs"; depends=[dplyr ggplot2 moments mvtnorm nlme numDeriv purrr]; }; + sketcher = derive2 { name="sketcher"; version="0.1.3"; sha256="011lx15whrdj5q5h33h9brkzbn2fnpm1nx9ip1v9xl5xfkbj7952"; depends=[downloader dplyr imager jpeg magrittr png readbitmap stringr]; }; + skewlmm = derive2 { name="skewlmm"; version="0.2.2"; sha256="12lcim5k4q1g9n3nf1cyb1zyis2596jvwim286mifmwrxji0m20p"; depends=[dplyr ggplot2 moments mvtnorm nlme numDeriv purrr]; }; skewt = derive2 { name="skewt"; version="0.1"; sha256="1xm00zfzjv53cq9drfcx7w2ri5dwsq7kajrk2hc1mvw0b6s4x2ix"; depends=[]; }; - skimr = derive2 { name="skimr"; version="2.1.1"; sha256="0p2syjaz5f5p5d684j8kpv8hqhp9xcffjqqlblzgvj6n56h5h1sh"; depends=[cli crayon dplyr knitr magrittr purrr repr rlang stringr tibble tidyr tidyselect vctrs withr]; }; + skimr = derive2 { name="skimr"; version="2.1.2"; sha256="056cdf95hc1l19f5kjkyyxrnx6kl0lw0zzcin3xnblzbqvl0zrzh"; depends=[cli crayon dplyr knitr magrittr purrr repr rlang stringr tibble tidyr tidyselect withr]; }; + sklarsomega = derive2 { name="sklarsomega"; version="2.0-1"; sha256="0pk3dk0bsbby4wnj8sad8yllix48hq3ayv3709kglc97d8bhjzha"; depends=[extraDistr hash LaplacesDemon Matrix mcmcse numDeriv spam]; }; skm = derive2 { name="skm"; version="0.1.5.4"; sha256="06g3bdncq2r56d8k3dr87gqnibypbsps0gj4jxkw9q1sq1yaff3v"; depends=[data_table magrittr plyr Rcpp RcppArmadillo RcppParallel]; }; - skmeans = derive2 { name="skmeans"; version="0.2-11"; sha256="1a8nwlym6pf0z13nnw1id2wls9lq788860yhjaqd56c3slzfsymn"; depends=[clue cluster slam]; }; + skmeans = derive2 { name="skmeans"; version="0.2-12"; sha256="0n6nvhpzhkrp5jg7d2yy6y95hsfi0sphg1792nr2ccxivqwgyy8l"; depends=[clue cluster slam]; }; skpr = derive2 { name="skpr"; version="0.64.2"; sha256="07fchgv0aqgw0hvcav08zzfzqg8nbw8ibbpd3bd11jx1fikx4vyr"; depends=[base64enc car crayon doParallel doRNG foreach future iterators kableExtra knitr lazyeval lme4 lmerTest magrittr nlme promises Rcpp RcppEigen rintrojs shiny shinyjs shinythemes survival viridis]; }; - skynet = derive2 { name="skynet"; version="1.3.0"; sha256="02kkgrqcrg1x61fip47w6vzi8nya12rxg47qjhn4lw4czaympqpx"; depends=[data_table dplyr ggplot2 ggrepel httr igraph maps stringr]; }; + skynet = derive2 { name="skynet"; version="1.3.8"; sha256="1aw4gkjziisq93cjzckb8hac24fmj30v78cln88hx2sydpgsbszg"; depends=[data_table dplyr geosphere ggplot2 ggrepel httr igraph leaflet maps stringr]; }; slackr = derive2 { name="slackr"; version="1.4.2"; sha256="1vm2h5fzcss3xx1annx68wrvv6c0s6h2ci0bipxmdl9amdaqw85w"; depends=[dplyr ggplot2 httr jsonlite]; }; slam = derive2 { name="slam"; version="0.1-47"; sha256="12fggw2c7hz3bpvsaqm24g3r6lbpq6jgli24g7x5j859iak5cqv9"; depends=[]; }; - sld = derive2 { name="sld"; version="0.3.2"; sha256="0za5pw7ki419ni9pqqzddb10d16nvv5rh5jrkl4f77j0ps2ajylp"; depends=[lmom]; }; + sld = derive2 { name="sld"; version="0.3.3"; sha256="1ggvyx1nsfc1wwwzlqgvk6p5xxq6r6yx2rjv0290q7p06gc3i1ll"; depends=[lmom]; }; sleekts = derive2 { name="sleekts"; version="1.0.2"; sha256="0syk244xrsv8hz5sxm7wizk0kyn1nc6z4c63c8xn57fz130zj75k"; depends=[]; }; sleepr = derive2 { name="sleepr"; version="0.3.0"; sha256="1ka4pl6a09d1qga5svcirc5ywmzz9pcml09053745lz3p1v8fnn3"; depends=[behavr data_table]; }; sleepwalk = derive2 { name="sleepwalk"; version="0.3.0"; sha256="00w5c7a1nzy6v0irpskkqyldknq9vdq97r9im1h042zm6lnxxrr6"; depends=[cowplot ggplot2 httpuv jrc jsonlite scales]; }; slfm = derive2 { name="slfm"; version="1.0.1"; sha256="0s7fdvr4fvsb4789f9ly2x820g4xvabl04wk7k6i8pd5ckj2xjhy"; depends=[coda lattice Rcpp RcppArmadillo]; }; slga = derive2 { name="slga"; version="1.1.1"; sha256="0l8jfqmpc51fq4xil03lvgxxyqv08a5m4drfvrihfd6f1jkv6xkf"; depends=[httr raster sf xml2]; }; slickR = derive2 { name="slickR"; version="0.4.9"; sha256="1smlzl0gq01vhv4qqwgikzdwg0z9k5mjf956sf64ps8py1b8d5ry"; depends=[base64enc htmltools htmlwidgets lifecycle xml2]; }; - slider = derive2 { name="slider"; version="0.1.2"; sha256="0h3hvqhdgpsp2n03dmrvqf5zpmpd1f16rscnsmbhpjhn1s09c2zq"; depends=[glue rlang vctrs warp]; }; + slider = derive2 { name="slider"; version="0.1.5"; sha256="1x4jwfxam4czfkb1s5qds5krfw1h2p5a4rh6f5z4yvhsv0d81xck"; depends=[glue rlang vctrs warp]; }; slideview = derive2 { name="slideview"; version="0.1.0"; sha256="0zq5s6qdxn6ri88pp0wf2kg2k4byrrsfvwh0ai892p4szqbc3w4v"; depends=[htmltools htmlwidgets lattice raster viridisLite]; }; slim = derive2 { name="slim"; version="0.1.1"; sha256="0x9bk6w6lmw15s85gw9g8d1wlb57kkvnmx1wsyasn93x9llkjva1"; depends=[data_table MASS]; }; slimrec = derive2 { name="slimrec"; version="0.1.0"; sha256="1qzcvk7z8y11hwmybvppk1gf8di596zxy7qs22fclp6h6y18s377"; depends=[assertthat bigmemory glmnet Matrix pbapply]; }; @@ -13806,13 +14336,14 @@ in with self; { slurmR = derive2 { name="slurmR"; version="0.4-1"; sha256="00ihaq2f86spl4ra41lyszrgn52vgpfw0bv0px23gc6qngxzxd6y"; depends=[]; }; sm = derive2 { name="sm"; version="2.2-5.6"; sha256="0c4whcx879gb4lwvqnzxl5n9xgpcqh2c54ip9ami3mwfprzcv45q"; depends=[]; }; smaa = derive2 { name="smaa"; version="0.3-0"; sha256="0y7j4q147fdk7fffyinc803mfzzsmcdfx8bp695w3wkq1wwy9kyl"; depends=[]; }; - smacof = derive2 { name="smacof"; version="2.1-0"; sha256="0bylwa9dwr0q8saifh4fag0srs84g6chvfmslhs8vx42alkq94pz"; depends=[candisc colorspace doParallel e1071 ellipse foreach Hmisc MASS nnls plotrix polynom weights wordcloud]; }; - smacpod = derive2 { name="smacpod"; version="2.0.4"; sha256="0dh8n3rxrffr09a8q7vdlin9hq5f2v0hjjjqsmzgwf7ln1b9wcr1"; depends=[abind pbapply plotrix sp spatstat]; }; + smacof = derive2 { name="smacof"; version="2.1-1"; sha256="166acgllfwsdb28cjzb49f4b8gwcipqwzi9w45r4qmzyszf89xw3"; depends=[candisc colorspace doParallel e1071 ellipse foreach Hmisc MASS nnls plotrix polynom weights wordcloud]; }; + smacpod = derive2 { name="smacpod"; version="2.1"; sha256="1fi8v69xkm182nyaryz83kw55cdgv99cqglphlw82n4k7w0lfrk3"; depends=[abind pbapply plotrix sp spatstat]; }; smallarea = derive2 { name="smallarea"; version="0.1"; sha256="0jcv0xbh8v4g6zxxs4yyd0divwzk9d2w7g01r4s65khxvy3av7yx"; depends=[MASS]; }; smam = derive2 { name="smam"; version="0.5.3"; sha256="0hns3w6sm06fwxy3aybaz21j8bii5m5ps932ldilh0dj7rsqii6a"; depends=[doParallel doSNOW EnvStats foreach Matrix nloptr numDeriv Rcpp RcppGSL RcppParallel]; }; smapr = derive2 { name="smapr"; version="0.2.1"; sha256="1gcq66gs6968c5h303dqd2jyw2rcdwxv642ki1cmpdj6ix665dpr"; depends=[httr rappdirs raster rhdf5 rvest xml2]; }; - smartR = derive2 { name="smartR"; version="0.62.0"; sha256="1jc2zvys05xs8y24fsrqkfvg77dpcqd2ydq1rknh0j9m4qhd9x9i"; depends=[caret chron clues cluster foreign ggplot2 ggrepel ggthemes gridExtra gstat gsubfn gWidgets2 gWidgets2RGtk2 igraph jpeg jsonlite lattice mapdata mapproj maps maptools marmap mtsdi nnls PBSmapping plyr R6 RColorBrewer reshape2 rgdal rgeos rjags ROCR rpart scales shape sp spdep sqldf vegan]; }; + smartR = derive2 { name="smartR"; version="0.62.3"; sha256="0ardb4arhr7qmr30b3ahf7hkwlys9i420bm8h2688phahgfkk0y8"; depends=[caret chron cluster foreign ggplot2 ggrepel ggthemes gridExtra gstat gsubfn gWidgets2 gWidgets2RGtk2 igraph jpeg jsonlite lattice mapdata mapproj maps maptools marmap mtsdi nnls PBSmapping plyr R6 RColorBrewer reshape2 rgdal rgeos rjags ROCR rpart scales shape sp spdep sqldf vegan]; }; smartdata = derive2 { name="smartdata"; version="1.0.3"; sha256="06hqpsr68dqm5544965g648267kkixf44bh0g5x6ik66vj6crkfm"; depends=[adaptiveGPCA Amelia Boruta checkmate class clusterSim denoiseR discretization DMwR FSelector functional imbalance infotheo lle magrittr mice missForest missMDA MVN NoiseFiltersR outliers RoughSets unbalanced VIM]; }; + smartmap = derive2 { name="smartmap"; version="0.1.1"; sha256="0pxbjkkknng7xa8ihba69n1a2w9052fsbb0w8fq1y1qrqmmibwdi"; depends=[leaflet magrittr sf]; }; smartsizer = derive2 { name="smartsizer"; version="1.0.2"; sha256="1w2vf6q3f7bywkvazgxn9gh7f2bqy4rg74mm4r6izw4gx7r81ls6"; depends=[MASS]; }; smatr = derive2 { name="smatr"; version="3.4-8"; sha256="0qqqbg65flxh48sw7x90zvgzbpcfzb1811h0pz3zlhdw9a7khs9n"; depends=[]; }; smbinning = derive2 { name="smbinning"; version="0.9"; sha256="1sr0nsqqzxdf402g9qx1ycigbh330idl9n2cyli4x4zxj1nqm3yv"; depends=[Formula gsubfn partykit sqldf]; }; @@ -13821,20 +14352,20 @@ in with self; { smcure = derive2 { name="smcure"; version="2.0"; sha256="1j7fxnb0sx57a0l929c3haz4f1y829ymlq0cvdh0cia4qp6ydv60"; depends=[survival]; }; smdata = derive2 { name="smdata"; version="1.2"; sha256="1p26b46kg4hmhs2fl9h9vchar00llqv58ylx438bjgzz4f229qvr"; depends=[]; }; smds = derive2 { name="smds"; version="1.0"; sha256="0aqf3wfn6mlsl8a32gaf9qdpyxwsx19g6mma8qzgaysdmk6vhbpd"; depends=[MASS]; }; - smerc = derive2 { name="smerc"; version="1.1"; sha256="0kbjb1335wcljwj2nyxipxndzrsrrrims90zbplpdlz3h6afshii"; depends=[maps matrixStats pbapply randtoolbox smacpod sp]; }; + smerc = derive2 { name="smerc"; version="1.2"; sha256="0rl8pnpnrpvj49nb30i748yz7rkr6d4d1nkazyqj2lbp7sqdf51d"; depends=[pbapply randtoolbox sp]; }; smfsb = derive2 { name="smfsb"; version="1.3"; sha256="1328w7zpwd3nam6ha4bh14g919jjl87v323ijmbp1j71gc64nn2i"; depends=[abind]; }; - smicd = derive2 { name="smicd"; version="1.0.3"; sha256="0z7j14ijyccy6m4mnh3xn1m4pppmm8apbgm5x3cdpfiwfksw3j37"; depends=[formula_tools ineq laeken lme4 MuMIn mvtnorm spatstat truncnorm weights]; }; + smicd = derive2 { name="smicd"; version="1.1.1"; sha256="187ydw50py67ha0z3xyk9hk988gszd8jfzkgsv4hjlbx80fzb2nv"; depends=[formula_tools Hmisc ineq laeken lme4 MuMIn mvtnorm truncnorm weights]; }; smirnov = derive2 { name="smirnov"; version="1.0-1"; sha256="09mpb45wj8rfi6n6822h4c335xp2pl0xsyxgin1bkfw97yjcvrgk"; depends=[]; }; smnet = derive2 { name="smnet"; version="2.1.1"; sha256="0fa47zgm7jxvs3jfai54wsc6qa9ycqw4f3yr941fvkczwzh4ch02"; depends=[DBI RSQLite spam SSN]; }; - smog = derive2 { name="smog"; version="2.0"; sha256="1nrvh51kvh290w9wdyil5isx5xfz2yw8nmhm6f32hajipgn9j5fl"; depends=[doParallel foreach Rcpp RcppArmadillo Rdpack tidyr]; }; + smog = derive2 { name="smog"; version="2.1.0"; sha256="1mnnvp6crjwwiym16q4hmn9zwna1gblwqjlan4x9zyvgp1j70k26"; depends=[doParallel dplyr foreach ggplot2 magrittr Rcpp RcppArmadillo Rdpack rmarkdown tidyr]; }; smoke = derive2 { name="smoke"; version="2.0.0"; sha256="1jdl5swg66vqryd40rrqpsnkczmsiaf5x6vlfv774vbnrc6q2v2g"; depends=[Rdpack]; }; smoof = derive2 { name="smoof"; version="1.6.0.2"; sha256="14zwrsyhbrwggwiaq8vxps8cgkp6glb14b2cp2ph1ppa0abvlbfq"; depends=[BBmisc checkmate ggplot2 mco ParamHelpers plot3D plotly RColorBrewer Rcpp RcppArmadillo RJSONIO]; }; - smooth = derive2 { name="smooth"; version="2.5.6"; sha256="0wnb6d1h0l4frri6k5hpshb1bqqq7x2hqz591qbzj47h1fxrnpwq"; depends=[forecast greybox nloptr Rcpp RcppArmadillo zoo]; }; + smooth = derive2 { name="smooth"; version="2.6.0"; sha256="0q4bmyhf6qzqj4p340yrpqa0rbgdij38yg71yfajjzz9cbzf9nl0"; depends=[forecast greybox nloptr Rcpp RcppArmadillo zoo]; }; smoothAPC = derive2 { name="smoothAPC"; version="0.3"; sha256="11f34qqdm8m0hmy9jf29q439slchvmqgdfrmak7vcdhfnjcylr5r"; depends=[colorspace lmtest quantreg rgl SparseM]; }; smoothHR = derive2 { name="smoothHR"; version="1.0.2"; sha256="0l33xg3p9pyfrp4rhavz8m1jakk4wr8i14g6jjiizb03rpxdpzqy"; depends=[survival]; }; smoothROCtime = derive2 { name="smoothROCtime"; version="0.1.0"; sha256="03iihjxb5xdaf74cm9cajqqjli754mdmv5v1y4hla9vv23017ca1"; depends=[ks]; }; - smoothSurv = derive2 { name="smoothSurv"; version="2.1"; sha256="1y6mjkvy6fi2j2gy7n8lslpxj2mqzs2wsi10cvlmgkx33mvhvkff"; depends=[survival]; }; - smoothedLasso = derive2 { name="smoothedLasso"; version="1.0"; sha256="1lhwhglhcsj3ilsa5vyizfw82sngg1yngrbh0xicfq72wqmmkwfa"; depends=[Rdpack]; }; + smoothSurv = derive2 { name="smoothSurv"; version="2.3"; sha256="0rxgps184hl49g8gpa7hjvdl2i01qkghmvlv8blwwr9rfk19aq1s"; depends=[survival]; }; + smoothedLasso = derive2 { name="smoothedLasso"; version="1.3"; sha256="0f11wdv0yn1nifrkq3k8amwdsf4j6acr0k9qc83awwkpil1z6x17"; depends=[Matrix Rdpack]; }; smoother = derive2 { name="smoother"; version="1.1"; sha256="0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"; depends=[TTR]; }; smoothie = derive2 { name="smoothie"; version="1.0-1"; sha256="12p4ig8fbmlsby5jjd3d27njv8j7aiwx0m2n1nmgvjj0n330s1kj"; depends=[]; }; smoothmest = derive2 { name="smoothmest"; version="0.1-2"; sha256="14cri1b6ha8w4h8m26b3d7qip211wfv1sywgdxw3a6vqgc65hmk5"; depends=[MASS]; }; @@ -13846,8 +14377,8 @@ in with self; { smpic = derive2 { name="smpic"; version="0.1.0"; sha256="0ff2146gjcrc6nvrbf4779jh076abhb843zzlk2zvqir13qfap61"; depends=[ggplot2 imager stringr]; }; sms = derive2 { name="sms"; version="2.3.1"; sha256="0vr5jy8bxbczaqr9kg0fnanxhv9nj51yzgacrb63k33cs85p981m"; depends=[doParallel foreach iterators]; }; smss = derive2 { name="smss"; version="1.0-2"; sha256="04lgfdcvnzpnpplyl62fy7slyiy8wkqpjjrzmclgqis3c9zkkncp"; depends=[]; }; - smurf = derive2 { name="smurf"; version="1.0.5"; sha256="1ay19ggrhm7jzazcky9r9g0qq3p8jhqr209iqsc22qqwzx6bl1l6"; depends=[catdata glmnet MASS Matrix mgcv RColorBrewer Rcpp RcppArmadillo speedglm]; }; - sn = derive2 { name="sn"; version="1.6-1"; sha256="0snri2k8qslb7478c5jz4a5xxmmb1ipmp8x1jizi8mhj2cjic1w0"; depends=[mnormt numDeriv quantreg]; }; + smurf = derive2 { name="smurf"; version="1.0.6"; sha256="0629qbzi2n1zyf5pmbxfnxivnk9ppclbw0vmqcdhjjcwkfxir7nm"; depends=[catdata glmnet MASS Matrix mgcv RColorBrewer Rcpp RcppArmadillo speedglm]; }; + sn = derive2 { name="sn"; version="1.6-2"; sha256="179xb7yb8br99aa5awm2yxsy0v5w1kdhv6a7ifaliz2y64677m1g"; depends=[mnormt numDeriv quantreg]; }; sna = derive2 { name="sna"; version="2.5"; sha256="1j3i6300m686qqfmyvadim377cd3mplzgj6mandygw8brg50id8k"; depends=[network statnet_common]; }; snahelper = derive2 { name="snahelper"; version="1.1.0"; sha256="0fc1xilbc7dr5gsrhlp8zgbjppxi44lifsj79kh79783w8nyfqm1"; depends=[colourpicker DT formatR ggplot2 ggraph graphlayouts igraph miniUI rstudioapi shiny]; }; snakecase = derive2 { name="snakecase"; version="0.11.0"; sha256="1ky1x2cp5rd0ffd9m1fji9sq4z4jsrpxzg30brw8bb4ihfjj114r"; depends=[stringi stringr]; }; @@ -13859,9 +14390,10 @@ in with self; { snipEM = derive2 { name="snipEM"; version="1.0.1"; sha256="1ls3c9f47lgrnja8p34iz2md2mf5jva9rn5n1h3a43zs29g019v8"; depends=[MASS mvtnorm Rcpp RcppArmadillo]; }; snn = derive2 { name="snn"; version="1.1"; sha256="0yywn3v1iz9xizwli3gmzprkx66b5a813mbp8hq2vsj8n4lfj8r5"; depends=[]; }; snnR = derive2 { name="snnR"; version="1.0"; sha256="0qrl5ivpmipibszx8k9fvd8g462zzdcmzbjj1hb8apv4z79gzima"; depends=[]; }; + snotelr = derive2 { name="snotelr"; version="1.0.4"; sha256="0ni2hmlbxvhs9mwbf679yysd9gkj4fknfdwi7a6b32jsf0v6mg92"; depends=[httr magrittr memoise RSelenium rvest shiny wdman xml2]; }; snow = derive2 { name="snow"; version="0.4-3"; sha256="1n3n8pva9s34fvlw32yng0x416lmbv7q1fsd0ywa4kikmxym64l5"; depends=[]; }; snowFT = derive2 { name="snowFT"; version="1.6-0"; sha256="00rq2xibzhx7441v9jg138a4fkmx28hifs4yyj3pwi8najf0df4n"; depends=[rlecuyer snow]; }; - snowboot = derive2 { name="snowboot"; version="1.0.1"; sha256="0mkmmycfkl100fnmj2hs246bra4fvdr2sas1axw8z1w0ajdab1vy"; depends=[igraph Rcpp Rdpack VGAM]; }; + snowboot = derive2 { name="snowboot"; version="1.0.2"; sha256="0jj3p0g4rwml8vmlwj10rfisxfjlipcrpvq5z134z4j35jp6ggv3"; depends=[igraph Rcpp Rdpack]; }; snowfall = derive2 { name="snowfall"; version="1.84-6.1"; sha256="13941rlw1jsdjsndp1plzj1cq5aqravizkrqn6l25r9im7rnsi2w"; depends=[snow]; }; snowflakes = derive2 { name="snowflakes"; version="1.0.0"; sha256="0adna9jfs0wv4dhyjczxhq7c0ldjfai07p1q9119avxyilv9x0vi"; depends=[]; }; snp_plotter = derive2 { name="snp.plotter"; version="0.5.1"; sha256="16apsqvkah5l0d5qcwp3lq2jspkb6n62wzr0wskmj84jblx483vv"; depends=[genetics]; }; @@ -13876,12 +14408,12 @@ in with self; { soc_ca = derive2 { name="soc.ca"; version="0.7.3"; sha256="0z3phmvgwd3s6swfaywq851my12a2n48i6k26vhggc6pf9d28phl"; depends=[ellipse ggplot2 ggrepel gridExtra reshape2 shiny]; }; socceR = derive2 { name="socceR"; version="0.1.1"; sha256="1vd0r3vixavg1br2q3kfn3nvl7dw854vkcfwcvyw411k84ivb13y"; depends=[Rcpp]; }; social = derive2 { name="social"; version="1.0"; sha256="0ny81bhj80rlwwa6cgbkdz2rxz6bp0f3nvjr1sqxr4s8l8rnf4ic"; depends=[Rcpp]; }; - socialmixr = derive2 { name="socialmixr"; version="0.1.6"; sha256="0hrkylasyaalsh4gsazgfz5vyqvwnq5n4lzqmzjs2njlrkgwwf5y"; depends=[countrycode curl data_table httr jsonlite lubridate oai stringr wpp2015 XML]; }; - sociome = derive2 { name="sociome"; version="1.4.0"; sha256="0700xpslbi5f3b32pfqmxrwzymhxmpzl8jzxhvgpbm885f07n41j"; depends=[censusapi dplyr magrittr mice psych purrr rlang stringr tidycensus tidyr]; }; - socviz = derive2 { name="socviz"; version="1.1"; sha256="19naaiqxbqh8vmjx2ijd012lbxam3750zni491vp6aidwaqjznfw"; depends=[dplyr fs magrittr rlang tibble]; }; + socialmixr = derive2 { name="socialmixr"; version="0.1.7"; sha256="0j9bvl47m0j6fz6n6kxv3n76csd5bqg2vc3dp2wxl1h8afbpak6l"; depends=[countrycode curl data_table httr jsonlite lubridate oai stringr wpp2015 XML]; }; + sociome = derive2 { name="sociome"; version="1.4.2"; sha256="14kcly2lningjpzf04xi59fb9nb7cahhbplqndsb34rzwbifa534"; depends=[censusapi dplyr magrittr mice psych purrr rlang stringr tidycensus tidyr]; }; + socviz = derive2 { name="socviz"; version="1.2"; sha256="1294xwy26vshmaiw3pkx3f90j8g6fv64gygv88b7lnz6fhai1nq5"; depends=[dplyr fs magrittr rlang tibble]; }; sodavis = derive2 { name="sodavis"; version="1.2"; sha256="1jf5sml51qxlpgv5b1rvyig4dm4ijw2hpnk85zf790jp22xm64jw"; depends=[MASS mvtnorm nnet]; }; sodium = derive2 { name="sodium"; version="1.1"; sha256="1zxzi8xvxnhgcd5qrylf08nz1cdq3aslrswjas440qg63ypmbf6w"; depends=[]; }; - sofa = derive2 { name="sofa"; version="0.3.0"; sha256="10f01a23bq6a30f95cilfan588dg0bg36y7g14q46rmcz15cqbrx"; depends=[crul jsonlite mime R6]; }; + sofa = derive2 { name="sofa"; version="0.4.0"; sha256="1w78f8pnx4vh6znpwwcy9k4j795zji4bv88mi6ihdv09ar7if7yv"; depends=[crul jsonlite mime R6]; }; softImpute = derive2 { name="softImpute"; version="1.4"; sha256="07cxbzkl08q58m1455i139952rmryjlic4s2f2hscl5zxxmfdxcq"; depends=[Matrix]; }; softclassval = derive2 { name="softclassval"; version="1.0-20160527"; sha256="1f5qj5sajy3dg0mgss6f9w6v5a2prcypld9jcv457bd4n4a409kr"; depends=[arrayhelpers svUnit]; }; softmaxreg = derive2 { name="softmaxreg"; version="1.2"; sha256="0y1r4n83sv2744lpli65aip0c0cq823asb8gw9yy9yjjc9sbyr9s"; depends=[]; }; @@ -13895,17 +14427,17 @@ in with self; { solaR = derive2 { name="solaR"; version="0.45"; sha256="1vxpwaizjxy27r54anhf48pf97lm4ck750m0p4kmh716irmhp319"; depends=[lattice latticeExtra RColorBrewer zoo]; }; solarPos = derive2 { name="solarPos"; version="1.0"; sha256="0004da7vqpq14q5lhs8vyvjl99j8gzxd5wrlw5d1vwfns3ica0q5"; depends=[]; }; solartime = derive2 { name="solartime"; version="0.0.1"; sha256="0q6la6d281zgf1kxhrdvi3b91na60szknq0fvldvlnszlqb5vkgs"; depends=[lubridate]; }; - solitude = derive2 { name="solitude"; version="0.2.1"; sha256="0n4f59bjdcqfclagpjric965zsl1jfl8p194p64viainb9w11xz4"; depends=[data_table future_apply igraph R6 ranger]; }; + solitude = derive2 { name="solitude"; version="1.0.1"; sha256="0vgc1djimk6xa21r31lrjvpfz9j7d4pwmb8k2z7aw2vfh7kifz6a"; depends=[data_table future_apply igraph lgr R6 ranger]; }; solrad = derive2 { name="solrad"; version="1.0.0"; sha256="13ybllvmig1yqsy4md4kazs83hxb9lrlwy64yw1wwr1w6sxpbnp6"; depends=[]; }; solrium = derive2 { name="solrium"; version="1.1.4"; sha256="0x83s83r4sr4r9cgk9fgcw6xz778m4gg14fzwib3qja6ax2xpk2z"; depends=[crul dplyr jsonlite plyr R6 tibble xml2]; }; - solvebio = derive2 { name="solvebio"; version="2.7.2"; sha256="1f9sqgw5p4vzybg7iv12yy9nckp5rsb819pawgp4d2d7vwjhx4ky"; depends=[dplyr httr jsonlite mime]; }; + solvebio = derive2 { name="solvebio"; version="2.8.0"; sha256="1561bx070wh4h1phkll8gwj45qi5xg047lanf8dn50w0ik60fwf8"; depends=[dplyr httr jsonlite mime]; }; som = derive2 { name="som"; version="0.3-5.1"; sha256="1fbza1jxvwrkf5x3inkj36vshhkn7mz0ajqlxalbfmk6ngjw1x56"; depends=[]; }; som_nn = derive2 { name="som.nn"; version="1.1.0"; sha256="0mw2c2lqvdq9bhndpjyawjy43l4x7clcsx2350j45g7fnchhy602"; depends=[class hexbin kohonen som]; }; soma = derive2 { name="soma"; version="1.1.1"; sha256="1mc1yr9sq9h2z60v40aqmil0xswj5hgxfdh4racq297qw3a97my4"; depends=[reportr]; }; someKfwer = derive2 { name="someKfwer"; version="1.2"; sha256="0widny5l04ja91fy16x4giwrabwqhx0fs3yl48pv9xh4zj6sx563"; depends=[]; }; someMTP = derive2 { name="someMTP"; version="1.4.1"; sha256="19bsn8rny1vv9343bvk8xzhh82sskl0zg0f5r59g9k812q5llchn"; depends=[]; }; somebm = derive2 { name="somebm"; version="0.1"; sha256="1iwwc94k6znh4d3bbjnvwp4chc4wg0iy4v2f99cs4jasrsimb4p8"; depends=[]; }; - sommer = derive2 { name="sommer"; version="4.0.9"; sha256="0nrfra6n2rmgh1kxvsyxxxdy4fy6b2092lfmy5551l3l3hq5q3a2"; depends=[crayon lattice MASS Matrix Rcpp RcppArmadillo]; }; + sommer = derive2 { name="sommer"; version="4.1.0"; sha256="0a8bjljg408fxxkyhnz5ycj0rvw4jjfpcaibp0jjja0jyfkpdwn9"; depends=[crayon lattice MASS Matrix Rcpp RcppArmadillo]; }; somplot = derive2 { name="somplot"; version="1.6.4"; sha256="06c8p2lqz3yxmxdl7ji8a3czvxnsbl7bwyiig76pkwc3a5qqfbb9"; depends=[hexbin]; }; sonar = derive2 { name="sonar"; version="1.0.2"; sha256="1f0f5iqi3y9vnxyym14nm8dqxw0vcpnxmvvkx4sm612i4fclg1f9"; depends=[]; }; sonicLength = derive2 { name="sonicLength"; version="1.4.6"; sha256="0jh9zk908afqxacccsph6477cc8sbcc1vxbv7jz8ppgc20imw932"; depends=[]; }; @@ -13923,10 +14455,10 @@ in with self; { sound = derive2 { name="sound"; version="1.4.5"; sha256="1kbbb614d0fmj9l0yjiwf5yqnl7sby4xklp7qwp6rwjvq9bnm0ab"; depends=[]; }; soundcorrs = derive2 { name="soundcorrs"; version="0.1.1"; sha256="06d57ici4538mfw804vnqaf59n2zglqlxhdlmn9694v9q1xw24p6"; depends=[]; }; soundecology = derive2 { name="soundecology"; version="1.3.3"; sha256="16h6gbdlyav7wbfisdv1f2zsqhr45liidgj7qqk8giwjxgan8q97"; depends=[ineq oce pracma seewave tuneR vegan]; }; - soundgen = derive2 { name="soundgen"; version="1.6.2"; sha256="093i8v2i3np1gny0dsnw3i20n5x67w312sslgabgmibak66cdb37"; depends=[dtw mvtnorm phonTools reshape2 seewave shiny shinyBS shinyjs tuneR zoo]; }; + soundgen = derive2 { name="soundgen"; version="1.8.0"; sha256="1z60f5r1gpp89jcib4sy5qvsk5w25s4jhvbwmxndna3hnny8003h"; depends=[dtw mvtnorm phonTools reshape2 seewave shiny shinyBS shinyjs tuneR zoo]; }; source_gist = derive2 { name="source.gist"; version="1.0.0"; sha256="03bv0l4ccz9p41cjw18wlz081vbjxzfgq3imlhq3pgy9jdwcd8fp"; depends=[RCurl rjson]; }; sourcetools = derive2 { name="sourcetools"; version="0.1.7"; sha256="1jnjir0q2dj724f1mjm6p5h77yzyx6xcqy9r2g7gmcxkxw349627"; depends=[]; }; - sp = derive2 { name="sp"; version="1.4-1"; sha256="0fbh865r4py89g6ln8bslig2vbxxwa642p5k5g02rskyhajg35lg"; depends=[lattice]; }; + sp = derive2 { name="sp"; version="1.4-2"; sha256="02jxsd30apzjbdbssirysq70d4svdwzn931jhxr0ladl72g9bqvk"; depends=[lattice]; }; sp23design = derive2 { name="sp23design"; version="0.9"; sha256="1ihvcld19cxflq2h93m9k9yaidhwixvbn46fqqc1p3wxzplmh8bs"; depends=[mvtnorm survival]; }; spANOVA = derive2 { name="spANOVA"; version="0.99.2"; sha256="0dlx9wwccq67g4yni3gbrv43f5pgm3mg715q2v8f09r1akhfg5by"; depends=[ape car DT geoR gtools knitr MASS Matrix multcomp multcompView mvtnorm rmarkdown ScottKnott shiny shinyBS shinycssloaders shinythemes spatialreg spdep xtable]; }; spAddins = derive2 { name="spAddins"; version="0.2.0"; sha256="19wbcghcf0f9qvqy92jhsdcpmd9b4lkhxndvr71cyhzga539lh1n"; depends=[magrittr purrr rstudioapi stringr]; }; @@ -13934,16 +14466,15 @@ in with self; { spBayes = derive2 { name="spBayes"; version="0.4-3"; sha256="0hllm70dly1niigp9r5645as97phlkba46dp9brcr34080m6w1w9"; depends=[coda Formula magic Matrix sp]; }; spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.4"; sha256="0mf5ql9a45dkq0dw1l0h03gcnhm6if10faj72jrhgrlcrgzzdfyn"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; spCP = derive2 { name="spCP"; version="1.2"; sha256="0y00k96p96jgp84wbdhqfwsq2fg8c68gc5310rnzpiv3clws27fb"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; - spData = derive2 { name="spData"; version="0.3.5"; sha256="09l9j1vjbfyc8mikb8kliqmdjkg4xigq3zhdx98mv51flh5q87lh"; depends=[raster sp]; }; + spData = derive2 { name="spData"; version="0.3.8"; sha256="1mlsqy9cbilfc80cbdlbgsngvzdkrd9yjdkxnw2b1gzxnj6jcqbs"; depends=[raster sp]; }; spFSR = derive2 { name="spFSR"; version="1.0.0"; sha256="0094plnjlyhnnjqw3i4an5q95bw6hjy1gzc7zr6wy77faivqsbms"; depends=[class ggplot2 mlbench mlr parallelMap tictoc]; }; - spGARCH = derive2 { name="spGARCH"; version="0.2.1"; sha256="0bncjav7ph178phrcpx05lrb0c5fhn0xbhs9bbmrw856ngx4j0s2"; depends=[Matrix nleqslv Rcpp RcppEigen Rsolnp spdep truncnorm]; }; spMC = derive2 { name="spMC"; version="0.3.10"; sha256="0p0s6w7sif02b91b73a0zb2i4i95a8m86dkqmgx6w1jk9h2mgqaz"; depends=[]; }; spMaps = derive2 { name="spMaps"; version="0.4.0"; sha256="0n9693aam7gsclfhijq7cy61l0w4mm5vf3rjaz5w0jrz77lrkprh"; depends=[raster rgeos sp]; }; spNNGP = derive2 { name="spNNGP"; version="0.1.4"; sha256="14mz5cgxm9ka7q7f7qs80hqrgbk2mjphyc28ih73lkhcknl2v1lp"; depends=[coda Formula RANN]; }; - spTDyn = derive2 { name="spTDyn"; version="2.0"; sha256="0wandd5iqyqb474096lky04rrgj31gnyqnlmgw8ypxsypd0gqdy0"; depends=[coda sp spacetime spTimer]; }; + spTDyn = derive2 { name="spTDyn"; version="2.0.1"; sha256="1wprn2adw4l5pkwkfzdpcr07jxgycx9kaf8w8mfv27nka5hacgqx"; depends=[coda sp spacetime spTimer]; }; spThin = derive2 { name="spThin"; version="0.2.0"; sha256="0j10j1cbbwp3baqm3b59rxlnd643mkx1mirlxpnr1ad2g7xpm69f"; depends=[fields knitr spam]; }; - spTimer = derive2 { name="spTimer"; version="3.3"; sha256="0vzqig9dq4k6p5s2gbm5arqiih28ghzjx0fs7ml70vx2f181jrxi"; depends=[coda extraDistr sp spacetime]; }; - spaMM = derive2 { name="spaMM"; version="3.2.0"; sha256="1699zx097i20asf0yy7p7w45fbh4fqg8wj0ym8xz6fa85kalmma0"; depends=[crayon gmp MASS Matrix minqa nlme nloptr pbapply proxy Rcpp RcppEigen ROI ROI_plugin_glpk]; }; + spTimer = derive2 { name="spTimer"; version="3.3.1"; sha256="0lf39n32ifsmbcf35h0g60xniw72mlrzvzax3k6kz5c5k1wszlba"; depends=[coda extraDistr sp spacetime]; }; + spaMM = derive2 { name="spaMM"; version="3.4.1"; sha256="0iflz3a4wxkf072cmy2h9vzn71xgizpafwwhpw7xcs657i2irpms"; depends=[boot crayon gmp MASS Matrix minqa nlme nloptr pbapply proxy Rcpp RcppEigen ROI]; }; spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; }; space = derive2 { name="space"; version="0.1-1.1"; sha256="09dpksbda4lg5hax47a9h9shjmggza6583slvdj0fldblykpyxck"; depends=[]; }; spaceNet = derive2 { name="spaceNet"; version="1.2"; sha256="1s2672icxs0qvdhl52xhllgvh1i9mjfrn5j3icyw6h61ljbnhy11"; depends=[MASS mclust permute RcppTN Rfast sna vegan]; }; @@ -13953,25 +14484,26 @@ in with self; { spacey = derive2 { name="spacey"; version="0.1.1"; sha256="1p8kx3d08q9kz1wb286m3d8ckwkhfm5n42m65m4w5gz5kpfx0xfz"; depends=[httr jsonlite magrittr png raster rayshader rgdal]; }; spacyr = derive2 { name="spacyr"; version="1.2.1"; sha256="1b2ccgwsiqkvp7w37x8k7699c676q16vfrybkrfvyczyhki4s6nw"; depends=[data_table reticulate]; }; spaero = derive2 { name="spaero"; version="0.5.0"; sha256="1r3rgvmkcrkzm6ikbbmnm4rfdrnwgmn4wq21mxgjs2bzg2r72mw6"; depends=[]; }; - spagmix = derive2 { name="spagmix"; version="0.3-1"; sha256="0xfrm4i28sy490g5324bc43dxlrgcnzxg27gsd5b81mqi03sry9j"; depends=[abind mvtnorm RandomFields sparr spatstat]; }; + spagmix = derive2 { name="spagmix"; version="0.3-2"; sha256="18hffiknsx7z6w6p5dwqmg9fwghv1x6nzsxdlx0wjd6iixcf6a54"; depends=[abind mvtnorm RandomFields sparr spatstat]; }; spam = derive2 { name="spam"; version="2.5-1"; sha256="0ry0a76cljlmilrzcriiizcidxyhq1i7i9bqhvl1qda81ld8hifi"; depends=[dotCall64]; }; spam64 = derive2 { name="spam64"; version="2.5-1"; sha256="0fni9lwn51n0ax4qk1l1wslhbkfl44ryp5hgjprkql5a26nmv0nq"; depends=[]; }; spanel = derive2 { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; }; spanish = derive2 { name="spanish"; version="0.4.2"; sha256="15drc11lh0qxpww50p0smi8qxfbln82bx0yd74jqf71irhk5jxyp"; depends=[magrittr xml2]; }; - spant = derive2 { name="spant"; version="1.4.0"; sha256="0376ynqpjl2g4caskkrw0z1mcd495fiyalpb30fvhh1k0zwg2a8s"; depends=[abind complexplus fields foreach irlba lsei magrittr MASS matrixcalc miniUI minpack_lm mmand nloptr nnls numDeriv oro_dicom plyr pracma ptw readr RNifti RNiftyReg shiny signal smoother stringr tibble viridisLite]; }; + spant = derive2 { name="spant"; version="1.7.0"; sha256="06lixkgxy1r7i43k7nzsl8vidqgdg7gz5myj3zjr5n83ziz8ah6q"; depends=[abind complexplus fields foreach irlba jsonlite magrittr MASS matrixcalc miniUI minpack_lm mmand nloptr nnls numDeriv oro_dicom plyr pracma ptw readr RNifti RNiftyReg shiny signal smoother stringr tibble viridisLite]; }; sparcl = derive2 { name="sparcl"; version="1.0.4"; sha256="138krflvfdlx4hlh90mswds51i8aw2vv00gm5lgkfsvxj4w324jg"; depends=[]; }; spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.2"; sha256="1kvzfjhf1q5jzlq5d04s7d96j63vnvqqrh8s03rwkl79h1dhqhhp"; depends=[sparklyr]; }; sparkavro = derive2 { name="sparkavro"; version="0.3.0"; sha256="0g6ac9msfbx8f8j8rj0hvlxjsn317zyam207q7i8kf0hshs1r58f"; depends=[DBI dplyr sparklyr]; }; sparkbq = derive2 { name="sparkbq"; version="0.1.1"; sha256="0gccm8q5a45k9zm8f90r7fhcmriq8d038p022k7cikbr6rqsrmyh"; depends=[sparklyr]; }; sparkhail = derive2 { name="sparkhail"; version="0.1.1"; sha256="1a9p9i7fs6l9rx5ha6akjjl7qhfak01xsjg28ysv0imikmwp6hy7"; depends=[dplyr sparklyr sparklyr_nested]; }; sparkline = derive2 { name="sparkline"; version="2.0"; sha256="0lrr1lm7603di7x3mf53cp13d9ssjh9gmb43wa6z9yqapis2djm2"; depends=[htmltools htmlwidgets]; }; - sparklyr = derive2 { name="sparklyr"; version="1.2.0"; sha256="1bj9ndyz6nb7mw1pq0gksmw3xpwfjrj0mfmiiazzs3rvp91ap47c"; depends=[assertthat base64enc config DBI dbplyr digest dplyr ellipsis forge generics globals httr jsonlite openssl purrr r2d3 rappdirs rjson rlang rprojroot rstudioapi tibble tidyr withr xml2]; }; + sparklyr = derive2 { name="sparklyr"; version="1.3.1"; sha256="1fql2msrrfw3kk9kf0pz36lpsbnppbnipd5c90wbzpyhdp3ki6zd"; depends=[assertthat base64enc config DBI dbplyr digest dplyr ellipsis forge generics globals httr jsonlite openssl purrr r2d3 rappdirs rjson rlang rprojroot rstudioapi tibble tidyr uuid withr xml2]; }; sparklyr_nested = derive2 { name="sparklyr.nested"; version="0.0.3"; sha256="0lva7fbjp253kxq3970h52cr8s52xycbi03d5shsyna8grhkbczj"; depends=[dplyr jsonlite listviewer purrr rlang sparklyr]; }; sparktex = derive2 { name="sparktex"; version="0.1"; sha256="0r6jnn9fj166pdhnjbsaqmfmnkq0qr1cjprihlnln9jad05mrkjx"; depends=[]; }; sparktf = derive2 { name="sparktf"; version="0.1.0"; sha256="0jd018n7553q0ldv6whxbj2s38myig0m8zq4fbp8fsv34q5wnsx4"; depends=[sparklyr]; }; sparkwarc = derive2 { name="sparkwarc"; version="0.1.1"; sha256="07b66f12fz19042kj7d9p32j9sy3103zvil36xkf21hm9iyg6xph"; depends=[DBI sparklyr]; }; sparkxgb = derive2 { name="sparkxgb"; version="0.1.0"; sha256="1gyvmsm7q6w55p62cysrnkn69kq5rr4vwkd5vrcgbwdy3fbpl9xq"; depends=[forge sparklyr]; }; sparr = derive2 { name="sparr"; version="2.2-13"; sha256="1cn8bzlfairfrxfwwdap0pnaa97rn9h13jz54il8cn9zacnzb8yc"; depends=[doParallel foreach misc3d spatstat spatstat_utils]; }; + sparrpowR = derive2 { name="sparrpowR"; version="0.1.3"; sha256="18p8yym52cjb4pn7cw05f4ibzz1l9g48rq235g3wrmr552k839pi"; depends=[doParallel fields foreach raster sp sparr spatstat]; }; sparseBC = derive2 { name="sparseBC"; version="1.2"; sha256="0a1siyi9kc805qji4alnw3c21spf4iw4wpsbfl50zvs52p8vl8w2"; depends=[fields glasso]; }; sparseEigen = derive2 { name="sparseEigen"; version="0.1.0"; sha256="0vqcy61rarmp3liz8fr3vs3y40hkb3wfw89b5xsj1byaiap4772s"; depends=[]; }; sparseFLMM = derive2 { name="sparseFLMM"; version="0.3.0"; sha256="0xl4zymdl9nxarn0nz8zhb1926lblb7jmyi7h1vp9cdl0hjwbiyy"; depends=[data_table MASS Matrix mgcv refund]; }; @@ -13995,13 +14527,12 @@ in with self; { sparsevar = derive2 { name="sparsevar"; version="0.0.11"; sha256="18cylbi788ibpry6h9yphrwx2wwsaa25bq2s13h0dcfxyicl2f9p"; depends=[corpcor doParallel ggplot2 glmnet Matrix mvtnorm ncvreg picasso reshape2]; }; sparsio = derive2 { name="sparsio"; version="1.0.1"; sha256="181kzs9x3h497c7shfalbzrjz05bkj7mmjh9nyphxyi2jjrr6y1q"; depends=[Matrix Rcpp]; }; spate = derive2 { name="spate"; version="1.7"; sha256="1cr5jjrycfj9larsqgzfakk4qgfz8m5djg4ddzk6s3lg2iw06y43"; depends=[mvtnorm truncnorm]; }; - spatgraphs = derive2 { name="spatgraphs"; version="3.2-1"; sha256="0n7f3r4ahv1w5mwx5mnib3g4263kz73rh1fcfk5wb12y52x8n1iz"; depends=[Matrix Rcpp]; }; + spatgraphs = derive2 { name="spatgraphs"; version="3.2-2"; sha256="09bbcqgmbg6a65mnxivr4pghsanj22x1j0l4hq8bzpwgbas7byhy"; depends=[Matrix Rcpp]; }; spathial = derive2 { name="spathial"; version="0.1.2"; sha256="1vwzcwpmx8kwv821vjf940qd5am3k0shf1s14jva71mgxs70ddmb"; depends=[class igraph irlba knitr MASS matrixStats pracma rmarkdown Rtsne]; }; - spatial = derive2 { name="spatial"; version="7.3-11"; sha256="04aw8j533sn63ybyrf4hyhrqm4058vfcb7yhjy07kq92mk94hi32"; depends=[]; }; - spatial_tools = derive2 { name="spatial.tools"; version="1.6.2"; sha256="18x935ly2jpnah2dik44nsbin1wyy9v27galyf176bzmjhm029bb"; depends=[abind doParallel foreach iterators mmap raster rgdal sp]; }; + spatial = derive2 { name="spatial"; version="7.3-12"; sha256="0qrdhzd5r78iwi46nk8jr56dzz5l5imkflxjw64d0ys0wyg06fbn"; depends=[]; }; spatialClust = derive2 { name="spatialClust"; version="1.1.1"; sha256="042yrmh1rb0hxynxlbdpcissgy9zazs5aqx7vj388ibynzijck3r"; depends=[ggplot2 maptools rgeos sp]; }; spatialCovariance = derive2 { name="spatialCovariance"; version="0.6-9"; sha256="1m86s9a059spp97y37dcirrgjshcqzpdj11cq92vji624w4nrhlb"; depends=[]; }; - spatialEco = derive2 { name="spatialEco"; version="1.3-1"; sha256="075z9ggbm7kdl8aslpq5x0bniklnbmv9jb3ipx7r7xxvq5nf44pz"; depends=[cluster dplyr EnvStats exactextractr maptools MASS mgcv RANN raster RCurl readr rgeos rms sf sp SpatialPack spatstat spdep yaImpute]; }; + spatialEco = derive2 { name="spatialEco"; version="1.3-2"; sha256="0yp5fp34gki858425xahs39klvhaqjhkjrrgb1ml84mix1z45ylx"; depends=[MASS raster rgeos sf sp spatstat spdep]; }; spatialfil = derive2 { name="spatialfil"; version="0.15"; sha256="01fbn9zblz7rjsgqy3ikdqpf0p0idvb6m96mf7m7qi2ps5f48vzj"; depends=[abind fields]; }; spatialfusion = derive2 { name="spatialfusion"; version="0.6-2"; sha256="1vqv4424m8rnmyg463mvnk26q7dis4wd47swyyc8f8r4qd85agnz"; depends=[fields Rcpp rstan SDraw sp]; }; spatialnbda = derive2 { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; }; @@ -14009,27 +14540,28 @@ in with self; { spatialreg = derive2 { name="spatialreg"; version="1.1-5"; sha256="0zdj67rvfvssjch5hwyi4gvyr7pjgfjrkbhnc4q9psfjp9rhggyx"; depends=[boot coda expm gmodels LearnBayes MASS Matrix nlme spData spdep]; }; spatialrisk = derive2 { name="spatialrisk"; version="0.6.7"; sha256="1vd90v55wy7b1aqhlr2b6x445nwghn94qyz39439pcmp5y9n8zb8"; depends=[automap classInt dplyr fs ggplot2 gstat lubridate mgcv Rcpp RcppProgress sf sp tmap viridis vroom]; }; spatialsegregation = derive2 { name="spatialsegregation"; version="2.45"; sha256="04ibvk6shs15b8piln2lcnlj8s5gy6r7wraz6591dbc31grzaa36"; depends=[spatstat]; }; - spatialwarnings = derive2 { name="spatialwarnings"; version="1.3.1"; sha256="139m6jaw6f5gglwqrd4f5mzr4vkqk2r1a069971y7ap2klzzbhns"; depends=[ggplot2 plyr Rcpp RcppArmadillo reshape2 tidyr VGAM]; }; + spatialwarnings = derive2 { name="spatialwarnings"; version="2.0.0"; sha256="02dd4xyl3n6mfl201cmi0n2mq9j3p7mf0nn67nm6nnvgmkrpgxhg"; depends=[future future_apply ggplot2 gsl plyr Rcpp RcppArmadillo tidyr]; }; spatialwidget = derive2 { name="spatialwidget"; version="0.2.2"; sha256="082w44i9is0cn4kgbqlnzclyp4fj2is0r5kla29nvm4m2y83bdjj"; depends=[BH colourvalues geojsonsf jsonify rapidjsonr Rcpp sfheaders]; }; - spatsoc = derive2 { name="spatsoc"; version="0.1.13"; sha256="1b5wvkm39ij08fjd2fsnnvaz5l43izpmqxsngzs1kvb8gl45v0bp"; depends=[adehabitatHR data_table igraph rgeos sp]; }; - spatstat = derive2 { name="spatstat"; version="1.63-3"; sha256="0a2mavlvk6faqag3xpm38z85ljlgb64xg7bp657r94bwnfhs3d07"; depends=[abind deldir goftest Matrix mgcv nlme polyclip rpart spatstat_data spatstat_utils tensor]; }; - spatstat_Knet = derive2 { name="spatstat.Knet"; version="1.11-2"; sha256="0jkpj4m44cqid5jdn7fwg3cl15lsmc0dp3bzp6759spivsx1yzq1"; depends=[Matrix spatstat spatstat_utils]; }; + spatsoc = derive2 { name="spatsoc"; version="0.1.14"; sha256="0h9rrlansr2pk7n1jlq9pyn7d3q97q39c5zar4v9mdbyspfgbch1"; depends=[adehabitatHR data_table igraph rgeos sp]; }; + spatstat = derive2 { name="spatstat"; version="1.64-1"; sha256="06jmxfs9kz9qqi3ichfgn8dglwb87kq2nl578p83za5psv8cfgya"; depends=[abind deldir goftest Matrix mgcv nlme polyclip rpart spatstat_data spatstat_utils tensor]; }; + spatstat_Knet = derive2 { name="spatstat.Knet"; version="1.12-2"; sha256="01h01nqb18vjvr50xfn3zl7nwbs62gzjxdj6mjs3lxz3y9ljsmh1"; depends=[Matrix spatstat spatstat_utils]; }; spatstat_data = derive2 { name="spatstat.data"; version="1.4-3"; sha256="18lfj5vkwxgf5w9qz0g5al3zy8y2yi3bnd13w24hszfc82nbcmc9"; depends=[Matrix spatstat_utils]; }; spatstat_gui = derive2 { name="spatstat.gui"; version="1.0-2"; sha256="07lk3xrg5cyvgvw2xwvi77s4ma8qbnmy4whsvm1wdfvw40c0mfrz"; depends=[rpanel spatstat spatstat_utils]; }; spatstat_local = derive2 { name="spatstat.local"; version="3.6-0"; sha256="19kv85smy8jp2bx1mgppav50k07xm8zvmf7snzj29rrspiws7sig"; depends=[spatstat spatstat_utils tensor]; }; + spatstat_sparse = derive2 { name="spatstat.sparse"; version="1.1-0"; sha256="1iz6s1y765xi3n5x81n4fs52f4zr6r95mpg8263j0hjiqqg54vww"; depends=[abind Matrix spatstat_utils tensor]; }; spatstat_utils = derive2 { name="spatstat.utils"; version="1.17-0"; sha256="08h9kzkkxvlnngxnv5mdylfali5jj4yhgbr8kvf8l7glswz6ik9r"; depends=[]; }; - spatsurv = derive2 { name="spatsurv"; version="1.4"; sha256="0sw5a532p3bbbh3pxvscmmmg6jw126ncpihxiv01bpwmf85ld4z2"; depends=[fields geostatsp iterators lubridate Matrix RandomFields raster RColorBrewer rgeos sp spatstat stringr survival]; }; + spatsurv = derive2 { name="spatsurv"; version="1.5"; sha256="1l1yxh2ix13314z4mjpf9nz8ad8423v09vzwq95qlazc27hlhyyd"; depends=[fields iterators lubridate Matrix RandomFields raster RColorBrewer rgeos sp spatstat stringr survival]; }; spbabel = derive2 { name="spbabel"; version="0.5.1"; sha256="1q4y5has7yrsn1hv5nzm4imciv5sw5ycsvy5mpikrs1i670rbp6b"; depends=[dplyr rlang sp tibble]; }; - spc = derive2 { name="spc"; version="0.6.3"; sha256="0ik5qmf0f0l77rbg78rp8v606h0d1qp4kccl6j3vqfb2hjsqb7r0"; depends=[]; }; + spc = derive2 { name="spc"; version="0.6.4"; sha256="0r2ydj4mckpmf41kwn74xbd408xd3mx017l24cikx304n95a9j7y"; depends=[]; }; spc4sts = derive2 { name="spc4sts"; version="0.5.2"; sha256="039z6dnry5c2brmh7jsnb6cvb7a8nig1rrf4d4i5bpifi2x1hf06"; depends=[gridExtra LS2Wstat rpart]; }; spcadjust = derive2 { name="spcadjust"; version="1.1"; sha256="016i3zaaq800x4niz4fixa57nfj1m10sz5xskff4vq4v9fjn2sl0"; depends=[]; }; spcosa = derive2 { name="spcosa"; version="0.3-9"; sha256="1arwrkv2sj30mbz2a2mifag2yay5bswi4f1rrjhf16ap78xdg7pj"; depends=[ggplot2 rJava sp]; }; spcov = derive2 { name="spcov"; version="1.01"; sha256="1brmy64wbk56bwz9va7mc86a0ajbfy09qpjafyq2jv7gm7a35ph5"; depends=[]; }; spcr = derive2 { name="spcr"; version="2.0"; sha256="1n0lva9brpzxysw6p7l88cj8d46jng2zd7zvr5brqldzd3yl63l9"; depends=[]; }; spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; }; - spdep = derive2 { name="spdep"; version="1.1-3"; sha256="1f8cjffqqc6rnb3n4qym70ca6nz2kvrsd3g587wrqdr79nnbwnrk"; depends=[boot coda deldir expm gmodels LearnBayes MASS Matrix nlme sf sp spData]; }; + spdep = derive2 { name="spdep"; version="1.1-5"; sha256="0pbd7wrg5v44p2yxsjp774lpyzap3madir5mn5p3ix7ibk7ldjs7"; depends=[boot coda deldir expm gmodels LearnBayes MASS Matrix nlme sf sp spData]; }; spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; - spdplyr = derive2 { name="spdplyr"; version="0.3.0"; sha256="1fx0x1p860rq568dzppjvc7npmc6k606m34pqnhf8g13ybzyn878"; depends=[dplyr lazyeval rlang sp spbabel tibble]; }; + spdplyr = derive2 { name="spdplyr"; version="0.4.0"; sha256="0lijp78wgrky103137vfk3k4s051qppd6jq6s065k9i7y1azbpc1"; depends=[dplyr rlang sp spbabel tibble]; }; spduration = derive2 { name="spduration"; version="0.17.1"; sha256="1hsz4hcw85f1rj2pd8ppzsd1r8fh4yf6axc11yf2hd287ghzzxzy"; depends=[corpcor forecast MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; spdynmod = derive2 { name="spdynmod"; version="1.1.5"; sha256="1qxpvjqvfcjsy3z0naz438aa95v2d3imdfxj20vfb2zwpv9l3215"; depends=[animation deSolve raster sp]; }; spe = derive2 { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; }; @@ -14038,24 +14570,26 @@ in with self; { spec = derive2 { name="spec"; version="0.1.7"; sha256="0zgs9yki11wysvjnx88gl8iv0mcsbrasg29sbasp0855x5l8cg8k"; depends=[csv encode magrittr]; }; speccalt = derive2 { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; }; specklestar = derive2 { name="specklestar"; version="0.0.1.7"; sha256="04vm989yi31vqnf5rs6cdyikm4jzfd9njxh0ls3dvjrg19ipsnmn"; depends=[Rcpp]; }; + specmine = derive2 { name="specmine"; version="3.0.1"; sha256="0d6n94fsjzvrjad8br7878p857584my157rc6fbijqkwwrhfhp4x"; depends=[baseline caret compare e1071 ellipse gdata genefilter GGally ggplot2 hyperSpec impute MASS Metrics pcaPP pls RColorBrewer readJDX speaq]; }; specr = derive2 { name="specr"; version="0.2.1"; sha256="17bc7f644g40zsfxv3sw542piqgg09w3m3q14jgrifc8sw0ljvdf"; depends=[broom cowplot dplyr ggplot2 ggraph glue igraph lme4 magrittr purrr rlang tibble tidyr]; }; + specs = derive2 { name="specs"; version="0.1.1"; sha256="0x5s7aikj5x1dgxygizh2mcni74hy6dm7084h1pqqbh5ans00c6n"; depends=[Rcpp RcppArmadillo]; }; spectacles = derive2 { name="spectacles"; version="0.5-2-2"; sha256="0nr2s6mnnir7jwrv80s2vk8wffqd7dl7xj82ss1idshqxk0dliz3"; depends=[baseline epiR ggplot2 plyr reshape2 signal stringr]; }; spectral = derive2 { name="spectral"; version="1.3"; sha256="1x5fskivs08wh1ka63i40m1mzsgq1vl25dglzbk9qywxxphvfdmn"; depends=[lattice rasterImage]; }; - spectral_methods = derive2 { name="spectral.methods"; version="0.7.2.133"; sha256="0k8kpk94d2qzqdk3fnf6h9jmwdyp8h3klr0ilm5siwq5wkcz339l"; depends=[abind DistributionUtils foreach JBTools ncdf_tools nnet raster RColorBrewer RNetCDF Rssa]; }; spectralAnalysis = derive2 { name="spectralAnalysis"; version="3.12.0"; sha256="0mz01hx86qi65k6vzz9k1j9q7gi10dh14cqvrlfy93f3kmi52q0x"; depends=[baseline BiocGenerics data_table ggplot2 hNMF jsonlite magrittr NMF nnls plotly plyr RColorBrewer signal viridis]; }; spectralGP = derive2 { name="spectralGP"; version="1.3.3"; sha256="1jf09nsil4r90vdj7n1k6ma9dzzx3bwv0fa7svil9pxrd2zlbkbs"; depends=[]; }; spectralGraphTopology = derive2 { name="spectralGraphTopology"; version="0.2.0"; sha256="02j374zsz4ba8ldy52x43rih1p77b56cv5xlbycj5wmkzny2gzx1"; depends=[MASS Matrix progress Rcpp RcppArmadillo RcppEigen rlist]; }; + spectrolab = derive2 { name="spectrolab"; version="0.0.9"; sha256="085c7kpc142bx4ah9wnfc9isfs6y4960rs0cg6cw36179s31d17g"; depends=[devtools prospectr RColorBrewer shiny shinyjs usethis]; }; sped = derive2 { name="sped"; version="0.2-1"; sha256="05igpk8szdcs6kjhpmd9dmjvqdg199pz3hi0rwkhdjglxivvjzjn"; depends=[pooh]; }; speech = derive2 { name="speech"; version="0.1.0"; sha256="007s32w8qr45x1n40xdh85a329cgmm3809bi62ghnxzfny9vjb07"; depends=[dplyr lubridate magrittr pdftools purrr stringr tabulizer tibble tidyr tm]; }; speedglm = derive2 { name="speedglm"; version="0.3-2"; sha256="1b25zimk0z7ad62yacqdg0zk0qs0jja4i918ym942xfw4j1z3jjz"; depends=[MASS Matrix]; }; - spef = derive2 { name="spef"; version="1.0.8"; sha256="1c4hpm19zqh869z8qbixkfbidnygc3fy91d0m2l4bp2s6bq1wdnz"; depends=[BB ggplot2 nleqslv plyr sm SQUAREM survival]; }; + spef = derive2 { name="spef"; version="1.0.9"; sha256="115lmv2a21ws1mj22v1fbk72mqn3siqmw3frbg4nci96lnyr7qh6"; depends=[BB ggplot2 nleqslv plyr sm SQUAREM survival]; }; speff2trial = derive2 { name="speff2trial"; version="1.0.4"; sha256="0dj5mh2sdp6j4ijgv14hjr39rasab8g83lx1d9y50av11yhbf2pw"; depends=[leaps survival]; }; spellcheckr = derive2 { name="spellcheckr"; version="0.1.2"; sha256="09snc1ymzr4njnr3w502b84dqwjjd414higjxqi48jvh27br5k1l"; depends=[data_table dplyr stringr]; }; spelling = derive2 { name="spelling"; version="2.1"; sha256="1j92brq29za3di1723xhmx240ya2v351dvcg0r1xr5yclw1kh3jp"; depends=[commonmark hunspell knitr xml2]; }; spemd = derive2 { name="spemd"; version="0.1-1"; sha256="1aw8dg2fm8qd95bgim2kjwp7ax4b2g78521llsxv7fhdj9hl7rgw"; depends=[MBA sp spdep]; }; sperich = derive2 { name="sperich"; version="1.5-8"; sha256="0v4mnv9nl0dvmmfx10w03k02pwjjnip9526m3j1kpgn6c4wk1h93"; depends=[foreach rgdal sp]; }; - sperrorest = derive2 { name="sperrorest"; version="3.0.0"; sha256="0hhab72aqhjcznsghhxwnlxhmqr4wpnrndmy12b2cp5zbb0ca6q5"; depends=[future future_apply ROCR stringr]; }; - spex = derive2 { name="spex"; version="0.6.0"; sha256="1m56vmp1zacipr8kw4pwh0rpc0jhi8a59351g9c6gpx48ysj9sbk"; depends=[quadmesh raster reproj sp]; }; + sperrorest = derive2 { name="sperrorest"; version="3.0.1"; sha256="0lj8iwl5x9krxw9ffbxxgi94imlhyc9zzl5p90xylk5dsn0gcb76"; depends=[future future_apply ROCR stringr]; }; + spex = derive2 { name="spex"; version="0.7.1"; sha256="0lsmh1sywd4si0v10aix44hybwph3gan8w8cxz956dcgkz60p41v"; depends=[crsmeta quadmesh raster reproj sp]; }; spfrontier = derive2 { name="spfrontier"; version="0.2.5"; sha256="1vnvwcjbhvbmyn5rp4760amzy8k3y156q629fjymw9rw6zy45pbf"; depends=[ezsim moments mvtnorm numDeriv optimx spdep tmvtnorm]; }; spftir = derive2 { name="spftir"; version="0.1.0"; sha256="07vw8igy698jx671cj6hmf6ll9xvaq81fb6la7j95pqbd6jl284z"; depends=[pracma]; }; spgrass6 = derive2 { name="spgrass6"; version="0.8-9"; sha256="05xvdhisad0d7c69mvahzg6pvgvmb6dph50r34981palykic7qhn"; depends=[sp XML]; }; @@ -14067,53 +14601,52 @@ in with self; { spi = derive2 { name="spi"; version="1.1"; sha256="0gc504f7sji5x0kmsidnwfm7l5g4b1asl3jkn2jzsf2nvjnplx1z"; depends=[]; }; spiR = derive2 { name="spiR"; version="0.1.1"; sha256="10l93f1sw4i2fd67jni32758kmnamxqxsf671k57pbf4jyczwfyy"; depends=[dplyr gsheet reshape2]; }; spider = derive2 { name="spider"; version="1.5.0"; sha256="1y034v42jxjl3vj87iz5kaizq7fwppmn56z7yyvrrmk5ps4nqr1j"; depends=[ape pegas]; }; - spiderbar = derive2 { name="spiderbar"; version="0.2.2"; sha256="1ardf7i0s17k8psch7vv29xnvrhw427id5hx3b8jca5cbz1l2ylb"; depends=[Rcpp]; }; + spiderbar = derive2 { name="spiderbar"; version="0.2.3"; sha256="0sjwaar052502zbkdlyrr2l117n1gkigq9r44dfb3jncsq7pkpa7"; depends=[Rcpp]; }; spiders = derive2 { name="spiders"; version="1.2"; sha256="1qklm178bgkgpvrjf024jphsdh9can8300sf0702l4h0rk2daqbq"; depends=[plyr]; }; spikeSlabGAM = derive2 { name="spikeSlabGAM"; version="1.1-15"; sha256="1kg1vqx9zvn8jqh8ygjifpyd00npqz3ljbs7r3zgh28bclhfywai"; depends=[akima cluster coda ggplot2 gridExtra MASS MCMCpack mvtnorm R2WinBUGS reshape scales]; }; spikes = derive2 { name="spikes"; version="1.1"; sha256="080sna0sgii61kai5sirs6cijnvk1012djwfw705di9y2lvk1hqk"; depends=[emdbook]; }; spikeslab = derive2 { name="spikeslab"; version="1.1.5"; sha256="0dzkipbrpwki6fyk4hqlql3yhadwmclgbrx00bxahrmlaz1vjzh2"; depends=[lars randomForest]; }; spinBayes = derive2 { name="spinBayes"; version="0.1.0"; sha256="1qgqxxk4n17wj3q07irm2qj6lwc5188iwwbdkf588hvfy86lwpj8"; depends=[glmnet MASS Rcpp RcppArmadillo]; }; spind = derive2 { name="spind"; version="2.2.0"; sha256="1qswvj8hcjds3mjffzlxq87g79gijsk3mw26lfr81vyf5zmwm4w4"; depends=[gee geepack ggplot2 lattice MASS RColorBrewer rje rlang splancs stringr waveslim]; }; - spinebil = derive2 { name="spinebil"; version="0.1.0"; sha256="137ln9av551gp85qbdpvpa1iw738571vsbkry7bpzfwmbc4fz40z"; depends=[dplyr ggplot2 magrittr tibble tictoc tidyr tourr]; }; - spinifex = derive2 { name="spinifex"; version="0.1.0"; sha256="0z6jbxfrj8r3xlw4rkhq9s8yn0zl58wrzir9gyz66qj5f6c3s716"; depends=[dplyr GGally ggplot2 plotly tibble tourr webshot]; }; + spinifex = derive2 { name="spinifex"; version="0.2.5"; sha256="0an9k3ygcq6pyryms6b04fzkl6wqh84g353apx07zr52qn32kycr"; depends=[gganimate ggplot2 plotly shiny tourr]; }; spinyReg = derive2 { name="spinyReg"; version="0.1-0"; sha256="0kbg7rncrrl5xdsaw9vj909x97mfp77mjnvghczplmnwmmanyn72"; depends=[]; }; spiritR = derive2 { name="spiritR"; version="0.1.1"; sha256="1fjr63rl9hwqxzgm4lkb9v74cxxpi4lrlcgjixdm7zgccm8ihdvh"; depends=[httr magrittr xml2]; }; splancs = derive2 { name="splancs"; version="2.01-40"; sha256="0qs3lwyllrkahnvqbm8bzrf03bm9zk4s7p1n19s638y4xf0l6x3r"; depends=[sp]; }; splashr = derive2 { name="splashr"; version="0.6.0"; sha256="0l57w5gwr0p2049z1201nlqsy23h37gsybd1lj3vycxz43ir7213"; depends=[curl dplyr formatR HARtools httr jsonlite lubridate magick openssl purrr scales stevedore stringi xml2]; }; - splines2 = derive2 { name="splines2"; version="0.2.8"; sha256="0ygzqq0swhcss5v8bn7qg98fpvp3wibbnbzkbpw4nvfd8bg51m1v"; depends=[]; }; + splines2 = derive2 { name="splines2"; version="0.3.1"; sha256="03zh3v8z0030ivja4a08f0rrkn6k5g5kyaqnys81h3wja10gllyv"; depends=[Rcpp RcppArmadillo]; }; splinetree = derive2 { name="splinetree"; version="0.2.0"; sha256="0gqb3kwca42crrx6fj42ryl5pkxvankhp1chdlvi5lgg8mzmqsnl"; depends=[ggplot2 mclust mosaic nlme rpart treeClust]; }; splitFeas = derive2 { name="splitFeas"; version="0.1.0"; sha256="1cfiis32h5kkp8r1mndmj4xss9gw96vdzk7q68q3jhbwqiaxp9rp"; depends=[corpcor matrixStats]; }; splitSelect = derive2 { name="splitSelect"; version="1.0.0"; sha256="044pmsdq1kvs3qjglrdpwq5kxvxfybpaqmqhnmwpw4xlql4afvyc"; depends=[caret doParallel foreach glmnet multicool mvnfast]; }; splitTools = derive2 { name="splitTools"; version="0.2.1"; sha256="09dpkrdfkhh7hqgf0r4c5qx74aghs2gqy47dyakkb19fbx66glhl"; depends=[]; }; splitfngr = derive2 { name="splitfngr"; version="0.1.2"; sha256="0cf9y68m72j890a732m0n784nr12ydljr6s8i80f0in6q8lmw8ls"; depends=[lbfgs]; }; splithalf = derive2 { name="splithalf"; version="0.7.1"; sha256="0mpg6i6zh4s9sz10gs0h3y1cc1zva7vs805sb3qkghx857psgyw3"; depends=[dplyr ggplot2 patchwork plyr Rcpp robustbase tidyr]; }; - splithalfr = derive2 { name="splithalfr"; version="1.0.10"; sha256="08gl60dbjb4nq6ab0w7yj7ac0gnj0zxbvzlg3rkqczvx4r3gwkip"; depends=[dplyr rlang]; }; + splithalfr = derive2 { name="splithalfr"; version="2.0.12"; sha256="0xcd0zjm8nvj1vq241m2y9gdygiwi0mzvyh4znq7biviwfkya3ag"; depends=[bcaboot dplyr psych rlang tibble]; }; splitstackshape = derive2 { name="splitstackshape"; version="1.4.8"; sha256="0mpyf2kkfdl69pdc6brl1r6101vyc6pgr7z17s55ppg3y71k4q35"; depends=[data_table]; }; splm = derive2 { name="splm"; version="1.4-11"; sha256="15app94mxs6xlmqqhpa0q041skc4n4l2wfi6pmmhwinrgcqgncln"; depends=[bdsmatrix ibdreg MASS Matrix maxLik nlme plm spam spdep]; }; - splot = derive2 { name="splot"; version="0.5.0"; sha256="0r05lbx9zi8prhcc8pb1680amlq32dhpg7vwfssii9bm9xkznlwl"; depends=[]; }; + splot = derive2 { name="splot"; version="0.5.1"; sha256="0m2cx5rrwfyznzn12z9xkyrs9i6qkwyyymbk3z28gjxw31kszlc9"; depends=[]; }; spls = derive2 { name="spls"; version="2.2-3"; sha256="0bmb0ai5z80njhypd342i711x0bdkwcvlyn374lyyzj8h3d97mmv"; depends=[MASS nnet pls]; }; splus2R = derive2 { name="splus2R"; version="1.2-2"; sha256="0xrbj8vxy0pc6hl7m8abv71d3hjw47cl51s7j7priadyqczkq6sz"; depends=[]; }; splusTimeDate = derive2 { name="splusTimeDate"; version="2.5.0-142"; sha256="0l1cb6gvwysca5psnsppllsvmsq7gfrybxy7aiw7phnm6bhb4w67"; depends=[]; }; splusTimeSeries = derive2 { name="splusTimeSeries"; version="1.5.0-75"; sha256="14bg0yzwk3v0b1qrlfaxv48dpk380ha6wb2w4k02c9vmb51ysmw0"; depends=[splusTimeDate]; }; spm = derive2 { name="spm"; version="1.2.0"; sha256="0kn3ahhvpcr0qpsqid4d7rx613a9dpdw2x4zgrnmsimmw026q7xn"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; }; spm12r = derive2 { name="spm12r"; version="2.8.1"; sha256="1ndak1ba6gh3hij0x4njr4hv6nfvq91dpgb0zdw0nl11bi6999b0"; depends=[git2r matlabr neurobase oro_nifti R_utils]; }; - spmoran = derive2 { name="spmoran"; version="0.1.7.2"; sha256="0gqpnam9z6rni7sswdy3il3z5sdal8dlwm1lpzascdg709qgvdd8"; depends=[doParallel fields foreach ggplot2 Matrix rARPACK spdep vegan]; }; + spmoran = derive2 { name="spmoran"; version="0.2.0-2"; sha256="1zypgvm5ihpjbirfyksp5sm8g2hh24psyz6ylbg36ar57wif67zc"; depends=[doParallel fields foreach ggplot2 Matrix rARPACK RColorBrewer sp spdep vegan]; }; spnet = derive2 { name="spnet"; version="0.9.1-0"; sha256="1fy0fpgz2k985brfqyza1l49y0w2j9z308n542pgmkzqsnsdscpw"; depends=[shape sp]; }; spnn = derive2 { name="spnn"; version="1.2.1"; sha256="1yj89j7nynfyw1ikm6q5kdwdgiiwxx0aa6kgnri5wfnb4l0356l7"; depends=[MASS Rcpp RcppArmadillo]; }; - spocc = derive2 { name="spocc"; version="1.0.8"; sha256="05x9gax8zwpcp4014ffcml8whclkz0yydhb6jgw4wlljnrz8s92r"; depends=[crul data_table jsonlite lubridate rbison rebird rgbif ridigbio rvertnet tibble whisker wicket]; }; + spocc = derive2 { name="spocc"; version="1.1.0"; sha256="1g7rfnzv38g8x57bzfd6z8q9gzcqci7l4srjmax0m1m3n3m73q5k"; depends=[crul data_table jsonlite lubridate rbison rebird rgbif ridigbio rvertnet tibble whisker wicket]; }; spongebob = derive2 { name="spongebob"; version="0.4.0"; sha256="1ar5173fwx1am5rgjlnczfla6b49g0azl0h9vn89ipw7f71rr5j7"; depends=[]; }; spongecake = derive2 { name="spongecake"; version="0.1.2"; sha256="13fxizbfjvqkhkmxk5bwv2fj2xyjkbxrxicpdgwpg0wsk4dhj3s8"; depends=[ggplot2 jpeg magrittr plyr]; }; spork = derive2 { name="spork"; version="0.1.6"; sha256="0yih4cl118fkx19l4nbc6bicnpk9nkyfjnmq4ynda5bh8mbybdwm"; depends=[ggplot2 latexpdf png]; }; sporm = derive2 { name="sporm"; version="1.1"; sha256="07sxz62h4jb7xlqg08sj4wpx121n9jfk65196mnxdvb36lqmb4hp"; depends=[]; }; sport = derive2 { name="sport"; version="0.2.0"; sha256="1wb28iaa35naf5aczijb5g0l41yf098f7c20mjmkcd5w04l1mmks"; depends=[data_table ggplot2 Rcpp]; }; spotGUI = derive2 { name="spotGUI"; version="0.2.1"; sha256="1z664ricdsn8c29ks6hslm89f0qq6ls94pz4k256427cs95pk3ay"; depends=[gridExtra httpuv plotly rclipboard rhandsontable shiny shinyBS shinydashboard shinyjs smoof SPOT XML]; }; - spotifyr = derive2 { name="spotifyr"; version="2.1.1"; sha256="0d3n75gyyqi5vgp3z4v3g9l7963xgadi98p1b5iag78zzz1zkcz8"; depends=[dplyr genius httr jsonlite lubridate purrr readr rvest stringr tibble tidyr]; }; spp = derive2 { name="spp"; version="1.16.0"; sha256="08zxxgyp0h6733b08jmml7k4rhfd3mi5dda3jrzid0s184y0z29w"; depends=[BH caTools Rcpp Rsamtools]; }; sppmix = derive2 { name="sppmix"; version="1.0.2"; sha256="1924lrxjlijlbvjbkkwb3pfa4klg49ph6hz66b7kyy1371wa2b9y"; depends=[fields ggplot2 mvtnorm Rcpp RcppArmadillo rgl spatstat]; }; - spray = derive2 { name="spray"; version="1.0-8"; sha256="0gkzfzidwccznbf17qkmyppr7qsl8w7jn5ghqxgaqwkz6k8ad93f"; depends=[magic partitions Rcpp]; }; + spray = derive2 { name="spray"; version="1.0-9"; sha256="06w97jd4sw2gyjw6m1gljx8mghyxvyrabhmai8ccjq1j9f28q8q3"; depends=[magic partitions Rcpp]; }; spread = derive2 { name="spread"; version="2019.8.5"; sha256="1mc25abh1jxgis9p78pdy91a45kanr7y32xbqypyd514jjylnc52"; depends=[data_table fhidata Rcpp RcppProgress readxl stringr zoo]; }; spreadr = derive2 { name="spreadr"; version="0.1.0"; sha256="1azf1543ijlgmry0f2sxivpy4hk9mcwnn5kqggzwwzwla2ql3lhj"; depends=[extrafont ggplot2 igraph Rcpp]; }; sprex = derive2 { name="sprex"; version="1.4.1"; sha256="14idml4mipd4wyza7hqf49ww4dparmwaps35hxm8jg5h0w1pgh7j"; depends=[swfscMisc]; }; + springer = derive2 { name="springer"; version="0.1.2"; sha256="0zzc8fmqjm6pjsfg4sxjzdal9yrs43l5kp1fbkyqrsvxpm6p8hki"; depends=[MASS Rcpp RcppArmadillo]; }; sprintr = derive2 { name="sprintr"; version="0.9.0"; sha256="0nnzjn7zrcgcmk3rs0hn56jcjrzrn5z0kc77bv4zzvbz5vr8gbwj"; depends=[glmnet Rcpp RcppArmadillo]; }; sprm = derive2 { name="sprm"; version="1.2.2"; sha256="0iyijkjnyz4yx2cmazlnhkk0f5ls0c2q2aikwlzl13w6zbj040a8"; depends=[cvTools ggplot2 pcaPP reshape2 robustbase]; }; sprsmdl = derive2 { name="sprsmdl"; version="0.1-0"; sha256="09klwsjp5w6p7dkn5ddmqp7m9a3zcmpr9vhcf00ynwyp1w7d26gi"; depends=[]; }; @@ -14121,12 +14654,14 @@ in with self; { spselect = derive2 { name="spselect"; version="0.0.1"; sha256="02aiml4dh40n6yl52ypramn4847ykdi4y5lhsmchnnp4nnnqycsn"; depends=[magic pracma tester]; }; spsh = derive2 { name="spsh"; version="1.1.0"; sha256="1rmsgp0mrb4153v5f5xby7r3izvgz1a0vi63g5p9q5jd6z0gd2i1"; depends=[DEoptim FME hypergeo lhs pracma Rdpack]; }; spsi = derive2 { name="spsi"; version="0.1"; sha256="0q995hdp7knic6nca0kf5yzkvv8rsskisbzpkh9pijxjmp1wnjrx"; depends=[plot3D]; }; - spsur = derive2 { name="spsur"; version="1.0.1.3"; sha256="0zhgj5vlc52j1mr1dkh08gfy0l2s9lqrqjraqsyx6p94gc4by1hv"; depends=[Formula gmodels MASS Matrix minqa numDeriv sparseMVN spatialreg spdep]; }; + spsur = derive2 { name="spsur"; version="1.0.1.5"; sha256="04vpal54d9b4r6g9cwxqyxh3kk8lyq30x7ki48i399d4k4ffhgz7"; depends=[car Formula ggplot2 gmodels gridExtra lmtest MASS Matrix minqa numDeriv rlang sparseMVN spatialreg spdep]; }; spsurv = derive2 { name="spsurv"; version="1.0.0"; sha256="11jlbzvzxv3d1d0nwpbii46ddvphglrxv25rw7pvxbybcx2i7k6x"; depends=[BH coda loo MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; - spsurvey = derive2 { name="spsurvey"; version="4.1.2"; sha256="1lijys90x2s7xxx16bm6h9320kbldgpb1hnyij6s4fkrmqksk8mh"; depends=[crossdes deldir foreign Hmisc MASS rgeos sf sp]; }; + spsurvey = derive2 { name="spsurvey"; version="4.1.3"; sha256="1xpygn6wfkw9y5p1a9jmcky5asi1387bwh7wmlksn90zzn89wir2"; depends=[crossdes deldir foreign Hmisc MASS rgeos sf sp]; }; spt = derive2 { name="spt"; version="2.5.1"; sha256="04j38d2b35p4798znnc49vqrg8r8bygwi07vybfj3nzimlp2mkrn"; depends=[]; }; sptm = derive2 { name="sptm"; version="2019.11-25"; sha256="1hdymzngdppmh56dqh0k88n9hg68pbx9rgmimbz4ihnfx2plvadh"; depends=[kyotil survey survival]; }; + sptotal = derive2 { name="sptotal"; version="0.1.0"; sha256="0fr2czqfrk8n3iza2v5vpr00zs4s3dk4ar4xzfsriw5542glhykv"; depends=[ggplot2 matrixcalc mvtnorm sp tibble viridis]; }; spuRs = derive2 { name="spuRs"; version="2.0.2"; sha256="00c0hnyrcbkbj269czxbfgmgi88y0vxzm79sxclllkzr9rdd1p53"; depends=[lattice MASS]; }; + spup = derive2 { name="spup"; version="1.3-2"; sha256="098zga5dm785v5k0s0ql6j17i6zbnka0yhfni4irlki3y1ndw78m"; depends=[gstat magrittr mvtnorm purrr raster sp whisker]; }; sqldf = derive2 { name="sqldf"; version="0.4-11"; sha256="0q12vsb53p2wchgp8wfz5bk08wfnm0jxjrakclj4jyy6x3a7ksff"; depends=[chron DBI gsubfn proto RSQLite]; }; sqliter = derive2 { name="sqliter"; version="0.1.0"; sha256="17jjljq60szz0m8p2wc5l56659aap7an5gknc848dp89ycjgj3zx"; depends=[DBI functional RSQLite stringr]; }; sqlparseR = derive2 { name="sqlparseR"; version="0.1.0"; sha256="0zcna9y61v1qklpnhrwgv1djg4hyx3k5an32caapszi8qm9nq3x8"; depends=[reticulate]; }; @@ -14134,24 +14669,25 @@ in with self; { sqlutils = derive2 { name="sqlutils"; version="1.2"; sha256="0dq4idg8i4hv9xg8jllllizqf3s75pdfm1wgncdjj52xhxh169pf"; depends=[DBI roxygen2 stringr]; }; sqp = derive2 { name="sqp"; version="0.5"; sha256="0l01zwcryv5bmzmd98gj0m5ip8nvr8lziq1awvfif1bzwvvd2kzx"; depends=[Matrix Rcpp RcppArmadillo RcppEigen Rdpack]; }; squash = derive2 { name="squash"; version="1.0.9"; sha256="1x66iamj5pir6l9aqx4x7xylxxjpjrw8vcix9rbhfd0y0y2iqf7z"; depends=[]; }; + squashinformr = derive2 { name="squashinformr"; version="0.1.2"; sha256="0983acs4h4ksdax89hy97l37rdwzwn40m3vimkrsfc1d586hvnv1"; depends=[dplyr Hmisc janitor lubridate naniar plyr polite rlang rvest stringr tibble tidyr xml2]; }; squid = derive2 { name="squid"; version="0.1.2"; sha256="1sf7q9pp68inr4ikaxm51f31gwxq9ixrsismrnnsby3agq6nsmkb"; depends=[arm data_table ggplot2 lme4 MASS shiny]; }; sra = derive2 { name="sra"; version="0.1.3"; sha256="0bdxgsz177szfqmvffidgkhl0lrdd7c1nzdvh7ijx99zmi5ww71n"; depends=[]; }; srm = derive2 { name="srm"; version="0.3-6"; sha256="0mc97pv1hsmia4v2wyb8yi37i3v1xypfv9xmhjb989xnnysf1lm3"; depends=[Rcpp RcppArmadillo]; }; srp = derive2 { name="srp"; version="1.2.0"; sha256="0xdzfvi7z78xmyxwd8fha3lr86jwmgjba1w8hhn4sv3v5gc9vlkh"; depends=[fda mgcv]; }; - srvyr = derive2 { name="srvyr"; version="0.3.8"; sha256="06fj9z7l7jl75sr2nqj1kp5wks5d7a8ca2d2b6vd3i0y9c4ljkxc"; depends=[dplyr magrittr rlang survey tibble tidyselect]; }; + srvyr = derive2 { name="srvyr"; version="0.4.0"; sha256="03r9swnsnfz401lvsa8951r6h8p2fvj7isd1gsh6dkkm9plvrqh8"; depends=[dplyr magrittr rlang survey tibble tidyselect]; }; ss3sim = derive2 { name="ss3sim"; version="1.0.3"; sha256="0s2yajlhi07fvqc0rr4msd9g2jrswb83dx55wsxnw925vikqa5kz"; depends=[bbmle foreach ggplot2 gtools r4ss]; }; ssMousetrack = derive2 { name="ssMousetrack"; version="1.1.5"; sha256="069jsp2l63jp4fv2hwadqxpkp89aqmbh439zy66rx55kws75b556"; depends=[BH CircStats cowplot dtw ggplot2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; ssanv = derive2 { name="ssanv"; version="1.1"; sha256="17a4a5azxm5h2vxia16frcwdyd36phpfm7fi40q6mnnrwbpkzsjd"; depends=[]; }; ssc = derive2 { name="ssc"; version="2.1-0"; sha256="1lq71p8hbjfg4a52009810k5dmhak9ddk1dywvhy7v2gjmxqnadw"; depends=[proxy]; }; sscor = derive2 { name="sscor"; version="0.2"; sha256="1kcrr90cxg6k4qkc3pidhkwf4dsnlgbxczxigr2afwpd9cpf104c"; depends=[mvtnorm pcaPP robustbase]; }; ssd = derive2 { name="ssd"; version="0.3"; sha256="1z61n9m6vn0ijawyz924ak0zfl9z13jsb4k4575b7c424ci2p6gy"; depends=[]; }; - ssdtools = derive2 { name="ssdtools"; version="0.2.0"; sha256="1nyym23q1f4v71g3rb5p59vdzylg8n90z2x2hkb7d6dycxjsyc8k"; depends=[abind actuar chk fitdistrplus ggplot2 lifecycle scales tibble VGAM]; }; + ssdtools = derive2 { name="ssdtools"; version="0.3.0"; sha256="0dq2asr9dlxyb0bfinzc91l10clg4kb7fgckfqz9pd1mhiz41as8"; depends=[abind actuar chk fitdistrplus ggplot2 lifecycle Rcpp scales tibble VGAM]; }; sse = derive2 { name="sse"; version="0.7-16"; sha256="1kxdgbskw7v48jnif4dpmwxpsdznfx8d9q5nkf3ynw9xl38rzv23"; depends=[lattice]; }; ssev = derive2 { name="ssev"; version="0.1.0"; sha256="1iw07gw9vhg073s5kkxh5f1si6p998rc1i2zglnpk5c3pi3l55wp"; depends=[MESS pwr]; }; ssfa = derive2 { name="ssfa"; version="1.1"; sha256="0fkyalhsjmx2sf8xxkppf4vd272n99nbkxh1scidrsgp4jk6z7fx"; depends=[Matrix maxLik sp spdep]; }; ssfit = derive2 { name="ssfit"; version="1.1"; sha256="1fais0msi2ppgfp0vbx3qri7s9zs51i7n90w36xkwwac4f46bq5y"; depends=[survey]; }; - ssgraph = derive2 { name="ssgraph"; version="1.10"; sha256="1fd83mfnzhsbvx77ddmmv0zmi3dq3hzvaj3g9x6xa47z0pf057vr"; depends=[BDgraph]; }; - ssh = derive2 { name="ssh"; version="0.6"; sha256="0hsql86hc30lc4aaz0j5pg28gz67fbd1kjvv4mlnfar8f5p8rk8c"; depends=[askpass credentials]; }; + ssgraph = derive2 { name="ssgraph"; version="1.12"; sha256="0mcg8bzgx0376f72xxqmsfwmnmfk6lcmam19d28psr1sxnhngklj"; depends=[BDgraph]; }; + ssh = derive2 { name="ssh"; version="0.7.0"; sha256="0sbgscvy6j3i2ik0rfc8rp26widi1p533kr5iy0wic7qdwfcav9b"; depends=[askpass credentials]; }; ssh_utils = derive2 { name="ssh.utils"; version="1.0"; sha256="08313zzzgcyvzkrkq0w0yf748ya1a9shx5xnan5891v0lah9v0b1"; depends=[stringr]; }; ssize_fdr = derive2 { name="ssize.fdr"; version="1.2"; sha256="0y723lwsnmk3rxbhlsrny9hiy07a5p255ygy9qkj6mri64gk1hby"; depends=[]; }; ssizeRNA = derive2 { name="ssizeRNA"; version="1.3.2"; sha256="1qw10yswzpg28fhvr6rsq0gh7xivfapw64gxc0hakb1nc31jf8ky"; depends=[Biobase edgeR limma MASS qvalue ssize_fdr]; }; @@ -14162,6 +14698,7 @@ in with self; { sspse = derive2 { name="sspse"; version="0.6"; sha256="1296893wgg0s6z5bv9a3k39gbxazvljl4dxiv4ma1s73nhz0xan9"; depends=[coda RDS scam]; }; ssr = derive2 { name="ssr"; version="0.1.1"; sha256="0l2f8lsmwv2f4y708g32jy2s4jj0j686830qp4a5ailyrdbbz1ix"; depends=[caret e1071]; }; ssrm_logmer = derive2 { name="ssrm.logmer"; version="0.1"; sha256="1i9rrsixl3swd04w1gf9gf1r2wb9nkvwhc8ld4bx4zxzm1031f67"; depends=[sfsmisc statmod]; }; + ssrn = derive2 { name="ssrn"; version="0.1.0"; sha256="1s78wiyn6ff6f55cp5knhram6m61cbckdnzm9q6imrjwngjci6cx"; depends=[dplyr magrittr purrr rlang stringr tibble tidyr]; }; sss = derive2 { name="sss"; version="0.1-0"; sha256="1qg56g60h8c52l8lpxihxsdgnqkxiag1mzh3p388r9hhff7g3g0k"; depends=[assertthat xml2]; }; sssc = derive2 { name="sssc"; version="1.0.0"; sha256="00m5zfd3jnbxa8x76v4pfyl4qdfq90n8rqx4hngany0ka1z5g7m6"; depends=[changepoint e1071 ggplot2 VGAM]; }; sstModel = derive2 { name="sstModel"; version="1.0.0"; sha256="04dvj6dbxidn1df2rslppl2pw2ql09rag39jrzdbnv6z20szbbd9"; depends=[data_table MASS openxlsx readxl shiny shinydashboard]; }; @@ -14170,7 +14707,7 @@ in with self; { st = derive2 { name="st"; version="1.2.5"; sha256="0dnyfjcz37gjjv87nrabb11gw2dlkqhq3mrxdpkzahx0w0g0q0pb"; depends=[corpcor fdrtool sda]; }; stR = derive2 { name="stR"; version="0.4"; sha256="120k8k1l8cfy8x746808jym7lnaplgh4s3lycgyq2wia2c35r0rc"; depends=[foreach forecast Matrix quantreg rgl SparseM]; }; stUPscales = derive2 { name="stUPscales"; version="1.0.3.4"; sha256="0a6b38lhi1p0n2hjq2j8aw2vkasdv50cpgllxfxla7ddwbhbk3nk"; depends=[data_table doParallel EmiStatR foreach ggplot2 hydroGOF lattice lmom mAr moments msm xts zoo]; }; - staRdom = derive2 { name="staRdom"; version="1.1.11"; sha256="071irc8bam5rk72db0s7si2mmzq29245qk63q78fdn3ll2lb6gpf"; depends=[cdom data_table doParallel dplyr drc eemR foreach GGally ggplot2 gtools matrixStats MBA multiway pracma R_matlab readr stringr tibble tidyr zoo]; }; + staRdom = derive2 { name="staRdom"; version="1.1.14"; sha256="0byxkl6i3bbwk6h4g4z09aif87gmlvxy64jny4c5c5bdpf4k3zbc"; depends=[cdom data_table doParallel dplyr drc eemR foreach GGally ggplot2 gtools matrixStats MBA multiway pracma R_matlab readr stringr tibble tidyr zoo]; }; staTools = derive2 { name="staTools"; version="0.1.0"; sha256="1ksr0sjkhlwh0fkwcxjcxzbyxs1g78m4spkhrmgdpfzmk5zskqf9"; depends=[magicaxis Rcpp VGAM]; }; stability = derive2 { name="stability"; version="0.5.0"; sha256="0mz7ikfhpfbdcp72klq7fi4zfmx2w18gz46yhwywcc4dyi277m11"; depends=[dplyr ggfortify ggplot2 lme4 magrittr matrixStats reshape2 rlang scales tibble tidyr]; }; stable = derive2 { name="stable"; version="1.1.4"; sha256="01azqg4yi5wl6wfdpjq57w41x5z2b4dsp5n3vpkz24b9avk6rm8s"; depends=[rmutil stabledist]; }; @@ -14182,7 +14719,6 @@ in with self; { stabreg = derive2 { name="stabreg"; version="0.1.2"; sha256="1jrxyv0d33vd9vdlj1cv1a2qdz8iqgr726f54dgazwsz3cpyy2ia"; depends=[numDeriv]; }; stabs = derive2 { name="stabs"; version="0.6-3"; sha256="17sa0sjxf6h7gx1ga1pxhv17yrz3qisaivbf5cbc3asvshhswqg9"; depends=[]; }; stackoverflow = derive2 { name="stackoverflow"; version="0.7.0"; sha256="0zv8bxzw4pgaa5ra8wsb9p7g8bwffdhc6gqsfrcs61zva7v9izc2"; depends=[]; }; - stacomiR = derive2 { name="stacomiR"; version="0.5.4.3"; sha256="0x3b8hp789ahxvd28jk01iyf2fn0mlfj16sx2w2x99jbqpfxqxkd"; depends=[dplyr ggplot2 gWidgets gWidgetsRGtk2 Hmisc intervals lattice lubridate magrittr mgcv RColorBrewer reshape2 RGtk2 rlang RODBC RPostgreSQL sqldf stacomirtools stringr xtable]; }; stacomirtools = derive2 { name="stacomirtools"; version="0.5.3"; sha256="00zpsfrw0gcjbjr3xdxf2wacrr1zfw6wq7a2ycq32pbh2smbkz4k"; depends=[RODBC xtable]; }; stagePop = derive2 { name="stagePop"; version="1.1-1"; sha256="0949r5ibl3sb10sr5xsswxap3wd824riglrylk7fx43ynsv5hzpy"; depends=[deSolve PBSddesolve]; }; stagedtrees = derive2 { name="stagedtrees"; version="1.0.2"; sha256="11s09r4bp3fd9nbfqmwbdkvlgkryf3n9awbffyk2rsd9cdva2lch"; depends=[]; }; @@ -14190,40 +14726,44 @@ in with self; { stampr = derive2 { name="stampr"; version="0.2"; sha256="10mc71kgnw5712q2gvzd4bmjaw1879r7s599hfsjap21idqb2k2m"; depends=[deldir maptools raster rgdal rgeos sp spdep]; }; standardize = derive2 { name="standardize"; version="0.2.1"; sha256="0ijyqy09fl478cvqnqwv7fpdmf2yvihw18abkkmgwdnm2v3xqphp"; depends=[lme4 MASS stringr]; }; stapler = derive2 { name="stapler"; version="0.7.1"; sha256="1bzhahn72fzm2bjpis76hphv8whnkp2jq8bm1qldadhng4z1nsak"; depends=[matrixStats RNifti]; }; - staplr = derive2 { name="staplr"; version="2.9.0"; sha256="1m1rikd1ijw9svdfm7nn9fnc9pycymbnnv2dq7ygs40jkq2mr4zp"; depends=[assertthat glue stringr]; }; stargazer = derive2 { name="stargazer"; version="5.2.2"; sha256="1pij76r60hkjlvxw6zw1v7gkib81smiqmjq7mwszn6xclq9lmsvh"; depends=[]; }; starm = derive2 { name="starm"; version="0.1.0"; sha256="0y580c6inmfix6agwd5nr340l3hjk2xxs95s468j5pghpjpb8rmv"; depends=[Matrix]; }; starma = derive2 { name="starma"; version="1.3"; sha256="07r0kyabhgbm2v39fcrw0qhxcxj9a9cb45g9chzcnn9qmvramcwx"; depends=[ggplot2 Rcpp RcppArmadillo scales]; }; - stars = derive2 { name="stars"; version="0.4-1"; sha256="14f0qky7578g61rqjdvpkpr4393pxgqbmh5hycxrxcq0mc2aiqq3"; depends=[abind classInt lwgeom rlang sf units]; }; - starsExtra = derive2 { name="starsExtra"; version="0.0.3"; sha256="0zcz6jjs57k3vq2rdqf91ngcsl0qmdswpisp9zfj9af7f9i7bmm5"; depends=[mgcv nngeo sf stars units]; }; - startR = derive2 { name="startR"; version="0.0.1"; sha256="12y57n3yip5rz4rln41896a15zv5b4c67k164282fh1p6ww9gr3r"; depends=[abind bigmemory future]; }; + starnet = derive2 { name="starnet"; version="0.0.3"; sha256="1g43v35j9wy23gspahdhpwn7vzv4r8q9r7xgafar93yykx3s0gyl"; depends=[cornet glmnet joinet Matrix survival]; }; + stars = derive2 { name="stars"; version="0.4-3"; sha256="0yf2x8l3bybc91r9vih473qrsqf05p6gszsr41ms63hksig8vwx2"; depends=[abind classInt lwgeom rlang sf units]; }; + starsExtra = derive2 { name="starsExtra"; version="0.1.0"; sha256="19v63vpcb5ikhmmjzsgaca1pr4n5yai40ligm4q1f9jfv48xwpkk"; depends=[mgcv nngeo sf stars units]; }; + starschemar = derive2 { name="starschemar"; version="1.0.0"; sha256="04mg0d5zzdj1fnpsnjdy9ajh639vc47gpi1wf00v5j4s2x21x224"; depends=[dplyr pander purrr readr rlang snakecase tibble tidyr tidyselect]; }; + startR = derive2 { name="startR"; version="2.0.0"; sha256="199wb16mrslhxj7lbkc4216khnwvj9hydnymh11vhwviawb9557k"; depends=[abind bigmemory ClimProjDiags easyNCDF future multiApply s2dverification]; }; startup = derive2 { name="startup"; version="0.14.1"; sha256="0nvmhfar53yi3wsvhv4idx849psdj46qhkvkxjn52fa7yflkrwz8"; depends=[]; }; startupmsg = derive2 { name="startupmsg"; version="0.9.6"; sha256="0vkqxir4ady4dn9s70dfg1fxck2xg8vnmrmxjzvk01i6pc9zyq0x"; depends=[]; }; + starvars = derive2 { name="starvars"; version="0.1.8"; sha256="1dr8dw7mj57hhz9147fj0mkscmq26ymvcd0czgdaig7vf4lljz6m"; depends=[data_table fGarch highfrequency ks lessR lubridate MASS matrixcalc maxLik nloptr quantmod R_utils rlist vars xts zoo]; }; + stat_extend = derive2 { name="stat.extend"; version="0.1.1"; sha256="1jb8hqzs9jzbmksmc4aijv62sa5aylin73p9g1vgw6s513dx2bcl"; depends=[sets]; }; statGraph = derive2 { name="statGraph"; version="0.3.0"; sha256="1xc10pkv3dq7x98xjqkg7ily89qj2r637y5qlnfvk08n6mzhn8w0"; depends=[igraph MASS]; }; statVisual = derive2 { name="statVisual"; version="1.2.1"; sha256="1cc9p9g8lzn0lgh793r977yhqbk89l74m443gnznjlfml69bfb21"; depends=[Biobase dplyr factoextra forestplot gbm GGally ggdendro ggfortify ggplot2 ggrepel glmnet gridExtra knitr limma magrittr pheatmap pROC pvca randomForest RColorBrewer reshape2 rmarkdown rpart_plot tibble tidyverse]; }; - statar = derive2 { name="statar"; version="0.7.1"; sha256="0gxchf3mnjvxcp7dg8f1dxbm16hx4ks92z0h0ig7m9l6k6f8adkv"; depends=[data_table dplyr ggplot2 lazyeval matrixStats rlang stringr tidyr tidyselect]; }; + statar = derive2 { name="statar"; version="0.7.2"; sha256="16bbpwnfa0ds04zbw87ayxvl8bfk2gk52w7lq32h1ny8f42hx9aq"; depends=[data_table dplyr ggplot2 lazyeval matrixStats rlang stringr tidyr tidyselect]; }; statcanR = derive2 { name="statcanR"; version="0.1.0"; sha256="1pyax5lixbpdg99n525w9z44s0zp5xda6ad605c3id0arki9c8xq"; depends=[curl data_table]; }; statcheck = derive2 { name="statcheck"; version="1.3.0"; sha256="0ivybdcrymlsfv6pg6p5bv70qdvgxf2vgp0kf4r0pf2fcvav1mcp"; depends=[ggplot2 plyr rmarkdown]; }; statcomp = derive2 { name="statcomp"; version="0.1.0"; sha256="0793k14rxiwq98zlrbsmbbkjn5z2ny5c90pia7cx3s77a3wdc96l"; depends=[Matrix zoo]; }; - statebins = derive2 { name="statebins"; version="1.2.2"; sha256="0qfs796dk5x983qah32w3npv9mxzljp3g7kffdd0ansn3z7i1zbb"; depends=[ggplot2 gridExtra RColorBrewer scales]; }; + statebins = derive2 { name="statebins"; version="1.4.0"; sha256="1v67da939qg672aqni2i37w70pgasgx6r55b4fjjc3zzviq8gipx"; depends=[ggplot2 scales]; }; states = derive2 { name="states"; version="0.2.2"; sha256="1lw1gljmkn8i8fd4ng5c3jpqrwr0gkiyazppy19dp8xl94m1xa4b"; depends=[dplyr]; }; + statespacer = derive2 { name="statespacer"; version="0.2.1"; sha256="02xfmwq89z5clh9w2c39vmi6h0lqkjdxgy6qlnz3fkj9lpv484i1"; depends=[Rcpp RcppArmadillo Rdpack]; }; statgenGWAS = derive2 { name="statgenGWAS"; version="1.0.4"; sha256="0hmxjm6phgysdkv467nbdmkxfnz55ilaii4hmslsn5p6dl37mqp3"; depends=[data_table ggplot2 Rcpp RcppArmadillo sommer]; }; - statgenSTA = derive2 { name="statgenSTA"; version="1.0.4"; sha256="0iry8gad5kvayvrrnfnhz5gz941wf4v23psqdaxy4ciha468nhlx"; depends=[emmeans ggplot2 ggrepel gridExtra knitr lme4 mapproj maps qtl scales SpATS xtable]; }; + statgenSTA = derive2 { name="statgenSTA"; version="1.0.5"; sha256="1mbq2h32qm0v102lx70qdif6pm6zdcpj78mlhm59cy98w0lwbbrx"; depends=[emmeans ggplot2 ggrepel gridExtra knitr lme4 mapproj maps qtl scales SpATS xtable]; }; stationaRy = derive2 { name="stationaRy"; version="0.5.1"; sha256="1620fdlybn3hr96yngnp802imr9b7n90835lyyd86r2wn6psdzvl"; depends=[downloader dplyr lubridate lutz magrittr progress readr stringr tidyr]; }; - stationery = derive2 { name="stationery"; version="0.98.24"; sha256="06qn3ck2cgcyrx8l27ka1y5dq8hyf01wq3hky6876a5g65b1wax2"; depends=[knitr kutils rmarkdown]; }; + stationery = derive2 { name="stationery"; version="0.98.30"; sha256="0gr4nja8xsajrx34m6cxpw3jc59flh7n5d3x111znajfwbym1b5n"; depends=[knitr kutils rmarkdown]; }; statip = derive2 { name="statip"; version="0.2.3"; sha256="0kymc3ds1nx0h11ffmm3vmqr1w34gd0k788vf72x2v45h8c1ma2n"; depends=[clue rpart]; }; statmod = derive2 { name="statmod"; version="1.4.34"; sha256="0yklg64aw5y8kfq5piafnrj1v3jv563iwzzl75g3kllrw23c508s"; depends=[]; }; statnet = derive2 { name="statnet"; version="2019.6"; sha256="17dj6vjnjyqrfhzjq1lys5b29j942kd15zffb69jidni3slf20q9"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm tsna]; }; statnet_common = derive2 { name="statnet.common"; version="4.3.0"; sha256="0ng90i0wm9wlyhjbnmnylc1bbqw396p1dr7f402dyry9x9ck6jl3"; depends=[coda]; }; - statnetWeb = derive2 { name="statnetWeb"; version="0.5.5"; sha256="1v2zgbfl975gqhkhxvgdfhgbw7yf9y3p6kqqxldr9zskhmrn7p1x"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; + statnetWeb = derive2 { name="statnetWeb"; version="0.5.6"; sha256="1haf2kr1mwvaz4hlwla2ysbcy3sbfcg3i4hyiy9y6lcffvy4w9w0"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; statnipokladna = derive2 { name="statnipokladna"; version="0.5.7"; sha256="0mj2dxianpd78127ggn0cml5nwwf6l26sds36qvfwbicaj7bk5jg"; depends=[curl dplyr httr jsonlite lifecycle lubridate magrittr purrr readr rlang stringi stringr tibble tidyr usethis xml2]; }; statprograms = derive2 { name="statprograms"; version="0.2.0"; sha256="0m7px7fmpz2zzlfdi7rbllcjvcjp8iy94f6fa1w4xinh7vz3y6vq"; depends=[]; }; statquotes = derive2 { name="statquotes"; version="0.2.2"; sha256="1xzc3ndddjrlyld0p4zcwwxkj7i3m3adj7c78x9l4lhlw9mxbbqg"; depends=[stringr tidytext wordcloud]; }; stats19 = derive2 { name="stats19"; version="1.2.0"; sha256="0956s8z8qrkij52fq15ydl15zi3kg5czcx7kjcg20nmby5dqmd34"; depends=[readr sf]; }; - statsExpressions = derive2 { name="statsExpressions"; version="0.4.1"; sha256="0pzxl1w1ibcwcrzc4p8rc439s30hmcf8xwq7d9hq31vkf6kywpin"; depends=[boot broomExtra correlation dplyr effectsize ez ipmisc metafor metaplus purrr rcompanion rlang tidyBF tidyr WRS2]; }; + statsExpressions = derive2 { name="statsExpressions"; version="0.4.2"; sha256="1nhqxw9cmzhd4bk60fgg7nklhlk6j7r7naslaj8c3wbq7xn1lldl"; depends=[broomExtra correlation dplyr effectsize ez ipmisc metafor metaplus rcompanion rlang tidyBF tidyr WRS2]; }; statsguRu = derive2 { name="statsguRu"; version="0.1.0"; sha256="0pqz0la86mk6zp65zzbfwhxyrqqx040p8mrm2j9wqb53r8fbnmqc"; depends=[devtools htmltab plotrix]; }; - statsr = derive2 { name="statsr"; version="0.1-0"; sha256="1z0wfj1jxz02x7vl6sr651v85k88wg8rx0k2kkrwzc4ynim8shms"; depends=[BayesFactor broom cubature dplyr ggplot2 gridExtra knitr rmarkdown shiny tidyr]; }; - stcos = derive2 { name="stcos"; version="0.2.1"; sha256="1vjz7x9jign82h5kwqcy4jxqjdnhrsgf00dj5m51f6hvvzh3wv5s"; depends=[dplyr Matrix R6 Rcpp RcppArmadillo sf]; }; + statsr = derive2 { name="statsr"; version="0.2.0"; sha256="0xqwg519vd06d541jl3k3d6svfd623xz1z2cnrczpm99ql20q83m"; depends=[broom cubature dplyr ggplot2 gridExtra knitr rmarkdown shiny tibble tidyr]; }; + stcos = derive2 { name="stcos"; version="0.3.0"; sha256="0niy8inajs0vafbh47w5rajlp3bvgi9yakhyabjdrqhkjzs79lpx"; depends=[dplyr Matrix Rcpp RcppArmadillo sf]; }; stcov = derive2 { name="stcov"; version="0.1.0"; sha256="166w929sgd7nanw1zjhzwv50hd5vqhgsrgxnsga4dzrcvndalw70"; depends=[]; }; stdReg = derive2 { name="stdReg"; version="3.4.0"; sha256="003lp8yshjdql475hdpickwr0fngzn9qps1dzvx8zfy4x51xy8xl"; depends=[data_table drgee numDeriv survival]; }; stddiff = derive2 { name="stddiff"; version="3.0"; sha256="1z6rdchf46aaq0z9bp4dlc4h3swrgyjfdvg40f4lkyg5sgs4sliy"; depends=[]; }; @@ -14235,61 +14775,64 @@ in with self; { stemmatology = derive2 { name="stemmatology"; version="0.3.2"; sha256="1l2y4jlszz1dnafdl2wqqfgdjis07i3gzfnp1v1af32pvjy4zqhw"; depends=[cluster igraph xml2]; }; stepPenal = derive2 { name="stepPenal"; version="0.2"; sha256="08gizl6c606ibbv7x2rdvfw37rghkrprwszha79yngkzpajw8gql"; depends=[caret dfoptim glmnet mvtnorm pROC]; }; stepPlr = derive2 { name="stepPlr"; version="0.93"; sha256="1i54nyz8z5vq3mzfh6h2vd1q0hsdazc4mhrj9ad0zdvn0qnz61lv"; depends=[]; }; - stepR = derive2 { name="stepR"; version="2.0-4"; sha256="1jv2mv1glzap7nsyxwzil9wif3q3p4y9q0c3kphz49hwwrg20k79"; depends=[digest R_cache Rcpp]; }; + stepR = derive2 { name="stepR"; version="2.1-0"; sha256="15ncr5j8bdzqfir08vpfz1cin4i3m78i6crpzwfra5fdsi49jfrk"; depends=[digest lowpassFilter R_cache Rcpp]; }; stepp = derive2 { name="stepp"; version="3.2.0.0"; sha256="0fnjqbncadscv6ryvqyqf8qqgpfzh2hka5ld2zvw39mjqzy5gadi"; depends=[car survival]; }; steps = derive2 { name="steps"; version="1.1.0"; sha256="1p01cmvh5rbgwaz0r73iry60jq0f8rp3z8ql57vhmnd9kyrzf53m"; depends=[future future_apply memuse raster rasterVis Rcpp viridisLite]; }; stevedore = derive2 { name="stevedore"; version="0.9.3"; sha256="00zs2bl5h40rwbhnynjw2jbxlixjnk14rxn9chypqg5zgx9pqg2s"; depends=[crayon curl jsonlite yaml]; }; + stickr = derive2 { name="stickr"; version="0.3.1"; sha256="0krz123vz4bdcdi4p27r637pgz4rcj6kmyiqdf5x69riddvfxx8r"; depends=[base64enc fs gh stringr]; }; sticky = derive2 { name="sticky"; version="0.5.6.1"; sha256="1szfpay9cpdwq6v5fmnjyr00r4zhz6zd2rrl3h88v9l5xpfafi4w"; depends=[]; }; stilt = derive2 { name="stilt"; version="1.3.0"; sha256="0b1bs849hw2wcvaldybxk8h8wgwl6p7x4i7winncvngmhplgrvx4"; depends=[fields]; }; stima = derive2 { name="stima"; version="1.2.1"; sha256="091pjjr2pvd93l01szyj5gr9ixv1h90yd18h678nhpn0fncimszv"; depends=[rpart]; }; stinepack = derive2 { name="stinepack"; version="1.4"; sha256="0crl77gr4x2bz2zp0a0lqiw5iqlrcx7vj67igkbzg64d1fxai85d"; depends=[]; }; stlcsb = derive2 { name="stlcsb"; version="0.1.2"; sha256="08pnj1yb4xcbhnrp2wny8lq9rvcvmsgaza07k4358csfksvmcira"; depends=[dplyr lubridate purrr readr readxl rlang rvest sf stringr tibble xml2]; }; - stlnpp = derive2 { name="stlnpp"; version="0.3.5"; sha256="0n2qbqlh81ql0pqglalvkf9hl8jdz3nkkh7362w9b4qizk9azkzi"; depends=[spatstat]; }; + stlnpp = derive2 { name="stlnpp"; version="0.3.6"; sha256="1h17bnkg9lnjs1dskxid3bddj0509f8jwnwn3z5h5qfblk2yf06q"; depends=[spatstat]; }; stlplus = derive2 { name="stlplus"; version="0.5.1"; sha256="14728xsm982z9sg4rbqg307pbwqlsiyzj8z3sr9wr6fi0dayf6z5"; depends=[lattice Rcpp yaImpute]; }; stm = derive2 { name="stm"; version="1.3.5"; sha256="1yyfxaxqc6yq0yq68zhdnhpwpvsyp71dlmivn7zxixfmp932s6cn"; depends=[data_table glmnet lda Matrix matrixStats quadprog quanteda Rcpp RcppArmadillo slam stringr]; }; stmCorrViz = derive2 { name="stmCorrViz"; version="1.3"; sha256="1a4pckrbzsihyf1bqvw3cl0hxrc4yq1pnkgxgf4b8jday6zkxwcv"; depends=[jsonlite SnowballC stm tm]; }; stmgp = derive2 { name="stmgp"; version="1.0.3"; sha256="0yg2ffvaylhxfclkixk9n1wxigasvirdzdywqg016hjg7w166bp1"; depends=[MASS]; }; stmgui = derive2 { name="stmgui"; version="0.1.6"; sha256="1fn2m5l7y3p1riw39g6r3hpjxdccygih7yipp7dvc4msl9fm4h5c"; depends=[markdown shiny shinyBS shinyjs shinythemes stm tm]; }; stminsights = derive2 { name="stminsights"; version="0.3.0"; sha256="11lhsk7l11bcxsmc7hm8pnwj75634m5gkigr714i16ai2dkvzqpq"; depends=[dplyr ggplot2 ggraph ggrepel huge igraph purrr readr scales shiny shinyBS shinydashboard shinyjs stm stringr tibble tidygraph]; }; - stoRy = derive2 { name="stoRy"; version="0.1.3"; sha256="146xs8as5f8ig2xpj9k2san4bllqxddsnlflnhl0sy6132vshyr1"; depends=[data_tree R6]; }; + stoRy = derive2 { name="stoRy"; version="0.1.5"; sha256="1ccx5xpjx4f6y4afay7zk195891xx2z6z2a11xqx5qg8rf0fv9jm"; depends=[data_tree R6]; }; stocc = derive2 { name="stocc"; version="1.30"; sha256="0xpf9101094l5l75p9lr64gwh2b8jh4saw6z6m2nbn197la3acpw"; depends=[coda fields Matrix rARPACK truncnorm]; }; stochQN = derive2 { name="stochQN"; version="0.1.2"; sha256="1zwxw95jrpkqgbgwhwdy907v9gqmvn5as4v35a75wvy3nhawka9a"; depends=[]; }; - stochprofML = derive2 { name="stochprofML"; version="2.0.1"; sha256="0dcg3akrqxs49jr40kzv1lh598l1hgzrvmsi0zsfjm9466rlp1b0"; depends=[MASS numDeriv]; }; + stochprofML = derive2 { name="stochprofML"; version="2.0.3"; sha256="0j6m2byh7w9kcbp3mfvmg6fm6z0dq8k4qabj1yfkl0d1y2ifd1zd"; depends=[MASS numDeriv]; }; stochvol = derive2 { name="stochvol"; version="2.0.4"; sha256="1hb2fgnyn8zxq1j74x00msq3j807y70yxx2s3fq4csrb1935vr85"; depends=[coda Rcpp RcppArmadillo]; }; stockR = derive2 { name="stockR"; version="1.0.74"; sha256="002i0bhyskwyjjczfa752ghn19hvqhdyzdfkpvci3hb66rh94x65"; depends=[gtools RColorBrewer]; }; stocks = derive2 { name="stocks"; version="1.1.4"; sha256="0b6rl7pfkgzbpwnv7zzkr36hs5f1zb60d16ijslf7g9m25vvcyg6"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp TTR zoo]; }; stoichcalc = derive2 { name="stoichcalc"; version="1.1-3"; sha256="0z9fnapibfp070jxg27k74fdxpgszl07xiqfj448dkydpg8ydkrb"; depends=[]; }; stokes = derive2 { name="stokes"; version="1.0-5"; sha256="0xbjkrm9g7r2xnj629i5cfmmqkw60iq4k6lk3skmkj3xh20lcd5x"; depends=[magrittr partitions permutations spray]; }; stopwords = derive2 { name="stopwords"; version="2.0"; sha256="155g00ansyqfpp1mzd2q6mn0k214xinf78nww2368h24kz761jjw"; depends=[desc ISOcodes usethis]; }; - stormwindmodel = derive2 { name="stormwindmodel"; version="0.1.3"; sha256="0bh2avblcai49kz8v2i1awqvmzd8gpmla342xdb0siwfpd0caid3"; depends=[dplyr ggplot2 lubridate maps plyr rlang stringr tidyr weathermetrics]; }; + stormwindmodel = derive2 { name="stormwindmodel"; version="0.1.4"; sha256="1fwp5kazvx4q2yb9mjbbv36kkjli4prm7p4wihlq1pbw17q2mhrq"; depends=[dplyr ggplot2 lubridate maps plyr rlang stringr tidyr weathermetrics]; }; storr = derive2 { name="storr"; version="1.2.1"; sha256="0409gb6wji3cjxkdcd0wc3jvsx61h3rxd8a3nr018y8rh1rpsaj6"; depends=[digest R6]; }; stosim = derive2 { name="stosim"; version="0.0.14"; sha256="10k8j7manskjsrjc1l44yhy682b1qh0k2jx3cs5k69j2z42mnhmk"; depends=[Rcpp]; }; - stplanr = derive2 { name="stplanr"; version="0.5.2"; sha256="10cwfkln0xzwxllry9kmsmiq92agdkh7cfvpzbs3zgkm5ilvr1az"; depends=[curl dplyr geosphere httr igraph jsonlite lwgeom magrittr maptools nabor raster Rcpp RcppArmadillo rgeos rlang sf sp stringr]; }; + stplanr = derive2 { name="stplanr"; version="0.6.2"; sha256="0cpxp5527ri55gxf7zf9k4c0qnkzjrkn2akzfdvngg3rdbhcf20g"; depends=[curl dplyr geosphere httr igraph jsonlite lwgeom magrittr maptools nabor raster Rcpp RcppArmadillo rgeos rlang sf sp stringr]; }; stpm = derive2 { name="stpm"; version="1.7.7"; sha256="1l40zb9qwshg7saqmgi7c49a3jd93ycrbvmysgzs0q8pl94vgcfs"; depends=[knitcitations MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; }; stpp = derive2 { name="stpp"; version="2.0-4"; sha256="0y6k33qaqycw01288w36q82iq73nlsc2vkkaiamr3v312ja6gbxg"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat splancs]; }; + strand = derive2 { name="strand"; version="0.1.3"; sha256="1rnrrz54s16bw5ndhiw2dllzs8md263hgvf5mkx3jwm6vv5sd61x"; depends=[dplyr feather ggplot2 lubridate Matrix R6 Rglpk rlang tidyr yaml]; }; strap = derive2 { name="strap"; version="1.4"; sha256="0gdvx02w0dv1cq9bb2yvap00lsssklfnqw0mwsgblcy2j6fln7b0"; depends=[ape geoscale]; }; - strapgod = derive2 { name="strapgod"; version="0.0.4"; sha256="19v4g2wny21lb76crais5wxqkgq4hjh7gn961pr2w10kf4ll1vvx"; depends=[dplyr lifecycle rlang tibble tidyr]; }; strat = derive2 { name="strat"; version="0.1"; sha256="1axxrp750kjzcgxjdqfscjmryv1mkv4l23zk8k23z8l4ymhd2f5w"; depends=[Hmisc Rcpp RcppArmadillo]; }; - stratEst = derive2 { name="stratEst"; version="0.1.2"; sha256="045wmvkv9jxmazvy0p2dkf3200vy5gf124cv78132ysrnh2vcd4v"; depends=[Rcpp RcppArmadillo]; }; - strataG = derive2 { name="strataG"; version="2.4.905"; sha256="0mxhrnqqdgwmv2lqs2sgwa95lq5v4dl6vdqyasknbbfd8vddf393"; depends=[adegenet ape apex copula data_table dplyr DT genepop ggplot2 gridExtra Hmisc magrittr pegas phangorn purrr RColorBrewer Rcpp readr rlang rmetasim stringi swfscMisc tibble tidyr]; }; + stratEst = derive2 { name="stratEst"; version="1.0.1"; sha256="1khbhx7mmmaxwsk5lyya9qqi6hvvi5psz1jfb5zdpmyykj09aa95"; depends=[Rcpp RcppArmadillo]; }; + stratallo = derive2 { name="stratallo"; version="0.1.0"; sha256="0i8vqhf70x25p9z8amka2aaij7r28d83sp0nijim4n225bdfj6sk"; depends=[]; }; stratamatch = derive2 { name="stratamatch"; version="0.1.5"; sha256="12yk738acsdgn8n7brgl2pnha7ii91mzrksihv2rgks820rdjxip"; depends=[dplyr Hmisc magrittr rlang survival]; }; stratbr = derive2 { name="stratbr"; version="1.2"; sha256="15vkymmc61yz9szhfhc5663hfyqvh499ahwhr9mv1lhv5bikk0kb"; depends=[Rglpk snowfall stratification]; }; strategicplayers = derive2 { name="strategicplayers"; version="1.0"; sha256="19vijrlzawd701vvk9ig7yhzbirh39dxxcwfz8ywwvxxiaky5x55"; depends=[sna]; }; stratification = derive2 { name="stratification"; version="2.2-6"; sha256="1jlks3g8wpqlpci6v0ryyv93agiabdiklmk6ij0pc5icrfiynbhw"; depends=[]; }; stratifyR = derive2 { name="stratifyR"; version="1.0-2"; sha256="10qlxkdbym206bvl2wc8ig00fvj1n7553vmjk6rs2n4p945qd47g"; depends=[actuar fitdistrplus mc2d triangle zipfR]; }; - stratvns = derive2 { name="stratvns"; version="1.0"; sha256="1bw9l389lxiji4h7hrsshf24v135h6la9dg3xxjly53d4fi56ifh"; depends=[MultAlloc Rglpk sampling snowfall stratification]; }; + stratvns = derive2 { name="stratvns"; version="1.1"; sha256="01s3p9mml04pqfd7fydkmqdk0qf5jmzz3b3q3x5vavlma6fv8nwi"; depends=[MultAlloc partitions purrr]; }; straweib = derive2 { name="straweib"; version="1.1"; sha256="0hi59p580yg6rj72grq4jx6grv7lmpi2cimp0rbxhkjpj6i1hav9"; depends=[]; }; - stray = derive2 { name="stray"; version="0.1.0"; sha256="1pqixk21z1h76672vx5yx9xs6bfacm51fcsgw3911al09zsid6aw"; depends=[colorspace FNN ggplot2 ks pcaPP]; }; - stream = derive2 { name="stream"; version="1.3-1"; sha256="09f26m0fajaw77mb6pk9qkinzkhxpghagd1qhc3nkvcki3vwlcxa"; depends=[BH clue cluster clusterGeneration dbscan fpc MASS mlbench proxy Rcpp]; }; + stray = derive2 { name="stray"; version="0.1.1"; sha256="1pjw1bdkqsp085lrwca1psma95ncapfz8a5iampxgghydkhh3dm8"; depends=[colorspace FNN ggplot2 ks pcaPP]; }; + stream = derive2 { name="stream"; version="1.3-2"; sha256="07fj3dzn8lhm7wkjgx2c6g2i7n6rkwl77issn14bh0v3c8a5q2hg"; depends=[BH clue cluster clusterGeneration dbscan fpc MASS mlbench proxy Rcpp]; }; streamDepletr = derive2 { name="streamDepletr"; version="0.1.1"; sha256="0x7663xz9az8lq852923hr7chaif1iml8drb6ljg83rg55plmwir"; depends=[dplyr magrittr Rmpfr sp]; }; streamMOA = derive2 { name="streamMOA"; version="1.2-2"; sha256="1zm7bcdsyazqksizir5rqibgw6w1bz85gdga0ncirh2s1z0dhi79"; depends=[rJava stream]; }; streamR = derive2 { name="streamR"; version="0.4.5"; sha256="1clx3b0j2515r1nmnl6ki7qw5n54q3x2jvqv3zrc00kq71mlj7ix"; depends=[ndjson RCurl rjson]; }; streambugs = derive2 { name="streambugs"; version="1.1"; sha256="1r0fnvpmj2z34j3w2nbdvxlw9jnz8y3x1xx9ih3vxna50ldrg2z2"; depends=[deSolve]; }; + stressaddition = derive2 { name="stressaddition"; version="3.0.1"; sha256="0d4w7vj07dqn63lim6jqcnrnml8qirsw4fq0ayj290m2c5bkw510"; depends=[drc plotrix]; }; stressr = derive2 { name="stressr"; version="1.0.0"; sha256="00b93gfh1jd5r7i3dhsfqjidrczf693kyqlsa1krdndg8f0jkyj7"; depends=[lattice latticeExtra XML xts]; }; strex = derive2 { name="strex"; version="1.2.0"; sha256="1vshbq83szgig93ljhnwqwdsdskayszdzwk85n1n650clriv0b85"; depends=[checkmate glue magrittr matrixStats ore processx Rcpp rlang stringi stringr tibble]; }; - strider = derive2 { name="strider"; version="1.2"; sha256="0kfwanz80ki41yr5m0xw4nbbqgzl6zfvwqx906bxywlqiqi47cb6"; depends=[BH Rcpp]; }; + strider = derive2 { name="strider"; version="1.3"; sha256="114j0qpdyg8rrhj68zq596pgc4h7ja39n0rfxf0x9qg7imhaj1h6"; depends=[BH Rcpp]; }; stringb = derive2 { name="stringb"; version="0.1.14"; sha256="0hhqqsc3fif14dy623h6y3gxjg8lhff9wlglkygccs5iyhdjyl12"; depends=[backports]; }; - stringdist = derive2 { name="stringdist"; version="0.9.5.5"; sha256="1dqfakclzaf878x7mhwmqrcpcql2h9cv19fz5f3ygpajf3si5kqi"; depends=[]; }; + stringdist = derive2 { name="stringdist"; version="0.9.6"; sha256="0nb3iwpl4f3xxirns1frwvarpyrl4i5f74h8r6h80cg0a4mpdgcb"; depends=[]; }; + stringfish = derive2 { name="stringfish"; version="0.13.3"; sha256="19qcd5xswr4fx2c4bx7vcawxg0s2k1x5b606asnnn26y35n20b8m"; depends=[Rcpp]; }; stringformattr = derive2 { name="stringformattr"; version="0.1.2"; sha256="0x56k30clj5ajk0qg5sr8b9l0asz6ldivwr1ddy1vp1djliih1fx"; depends=[stringr]; }; stringi = derive2 { name="stringi"; version="1.4.6"; sha256="1mkgxzf000zdgbbbvg2vf4md4l501n5lfksffq8vdg6pbgd6fgv3"; depends=[]; }; stringr = derive2 { name="stringr"; version="1.4.0"; sha256="1p9ip7p87gbbg4s6d3d392svvzz2b5dqdq2c8ilgvn4s78nlsq47"; depends=[glue magrittr stringi]; }; @@ -14297,17 +14840,17 @@ in with self; { stripless = derive2 { name="stripless"; version="1.0-3"; sha256="08mdp7kq6r5bk77j09477d1dnn7iwa346pr24b5bqsxwnbknyrsr"; depends=[lattice]; }; striprtf = derive2 { name="striprtf"; version="0.5.2"; sha256="1ra6aalalig6drsj26z9s24lmb10zssagqrvgqqi4358zbm8gwcd"; depends=[magrittr Rcpp stringr]; }; strucchange = derive2 { name="strucchange"; version="1.5-2"; sha256="1y022363a4pp0mnji91sjh1qiyspkh09sybqwj03r9pmwrd7q93x"; depends=[sandwich zoo]; }; - structree = derive2 { name="structree"; version="1.1.6"; sha256="0d3ww07grprp908i3h1xaz3jw92g0g0s3gjdnb63wl10yqqsq2vj"; depends=[lme4 mgcv penalized]; }; - strvalidator = derive2 { name="strvalidator"; version="2.2.0"; sha256="0pfc6bj5sdik6a3qxsxshd6n3jp27kzap3hp6zlldknwybsavrl3"; depends=[data_table ggplot2 gridExtra gtable gWidgets2 gWidgets2tcltk MASS plyr scales]; }; + structree = derive2 { name="structree"; version="1.1.7"; sha256="178x6maghjaw9lkyjr84pq916vbq0ldh5gqia0r0vqs8k8dvna9i"; depends=[lme4 mgcv penalized]; }; + strvalidator = derive2 { name="strvalidator"; version="2.3.0"; sha256="0m1nxpvb7hbx9n00mc0ar7ay1sk8h819cmf0r0g323z23axq1kdx"; depends=[data_table ggplot2 gridExtra gtable gWidgets2 MASS plyr scales]; }; stsm = derive2 { name="stsm"; version="1.9"; sha256="18ypmkd7l7m7qkahb0nqf8f1m8g4irxlw48v2ms0dq1bsnhbzx7j"; depends=[KFKSDS]; }; stsm_class = derive2 { name="stsm.class"; version="1.3"; sha256="19jrja5ff31gh5k2zqhqsyd7w2ivr4s6bkliash6x8fmd22h5zs8"; depends=[]; }; - stuart = derive2 { name="stuart"; version="0.8.0"; sha256="1hcb1jybra0cpibxc1k31nr6xciwd2chxjfdnir4kfzxn2bd2cxd"; depends=[]; }; + stuart = derive2 { name="stuart"; version="0.9.0"; sha256="1qb6ky321mj2jrmdp7xsvmcnsqa1vhn5l5p6a95fhan3xrhk9225"; depends=[]; }; stubthat = derive2 { name="stubthat"; version="1.2.1"; sha256="130naxzvswcyadwcgldvwnxxdxbfwx5vljac7901vn3ahjp75d8z"; depends=[testthat]; }; studentlife = derive2 { name="studentlife"; version="1.0.0"; sha256="1snrsaapjwvcifa91hg5xcbg7n70aqcdyyq69gg20168qg8abkws"; depends=[crayon dplyr ggplot2 jsonlite purrr R_utils readr skimr tibble tidyr visdat]; }; studyStrap = derive2 { name="studyStrap"; version="1.0.0"; sha256="0lvzqnq40j0xn74qrj0pqhr8zz34mbhfd7dg8bnadscsvj5ffm4c"; depends=[caret CCA dplyr MatrixCorrelation nnls pls tibble tidyverse]; }; styler = derive2 { name="styler"; version="1.3.2"; sha256="1waglhsy2c53qjgd2qhlzda3z0lbzbwx9fkrfhac41y6h91mgkrz"; depends=[backports cli magrittr purrr R_cache rematch2 rlang rprojroot tibble withr xfun]; }; stylest = derive2 { name="stylest"; version="0.1.0"; sha256="0dr7j9fh8kp6wsqql38s3rk596xl6m9nx0w1l5v25hv2bphidxzr"; depends=[corpus Matrix]; }; - stylo = derive2 { name="stylo"; version="0.7.2"; sha256="0s49das1f9svg3grw6faivfxc33y3679z7qiib68fm8ckma94mj9"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; + stylo = derive2 { name="stylo"; version="0.7.3"; sha256="0d5k0l6k9c82i0imf28y4wc4dpmnf0w5vr2nghf4pfd76spli411"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; suRtex = derive2 { name="suRtex"; version="0.9"; sha256="0xcy3x1079v10bn3n3y6lxignb9n3h57w4hhrvzi5y14x05jjyda"; depends=[]; }; subcopem2D = derive2 { name="subcopem2D"; version="1.3"; sha256="06wwd847g9pxd0z2a8494h3nc9s280a3s1510bir24m3z7w1pqf3"; depends=[]; }; subdetect = derive2 { name="subdetect"; version="1.1"; sha256="1bcc13avs5w9vmwyf71cnjd2kwmcavmzpwyv8gvsn61n7b4j8wlk"; depends=[]; }; @@ -14316,27 +14859,25 @@ in with self; { subgxe = derive2 { name="subgxe"; version="0.9.0"; sha256="0faww87ncylqixb640hc2axvn4i50d2r2ggngmd7s9wazbb6sd55"; depends=[]; }; sublime = derive2 { name="sublime"; version="1.3"; sha256="0455fppc68azxknxjvxci4kjpcj6c1jkp9adbxqrn3qnnywaj5v2"; depends=[AnalyzeFMRI downloader oro_nifti]; }; submax = derive2 { name="submax"; version="1.1.1"; sha256="0b9x55gqzw20smr3hx9izvyr0i8zv0h03hadn4c7ks7w8ga5i0kj"; depends=[mvtnorm sensitivityfull]; }; - subniche = derive2 { name="subniche"; version="1.2"; sha256="1qmryjgwgz43zym7f7p1bw0l8sxqivhksiv8a03r3y51d766gmkn"; depends=[ade4 polyclip siar wordcloud]; }; + subniche = derive2 { name="subniche"; version="1.3"; sha256="11idxnxqq87q1lzdc2xiw2w9znxlb21rf2jz3bhq4ykzk2dbqs50"; depends=[ade4 polyclip siar wordcloud]; }; subplex = derive2 { name="subplex"; version="1.6"; sha256="1yfbfjvpbhgky7vihw3f4jl41pxpqb39z4nc045d5z7z48bdl18d"; depends=[]; }; subrank = derive2 { name="subrank"; version="0.9.9.1"; sha256="19lgw7248jq6b34i17c7vw208wsvmppni7njswd02i9xdgyjn95z"; depends=[]; }; subsamp = derive2 { name="subsamp"; version="0.1.0"; sha256="1bfz2z2qy1war3id8qr1asygwvwxgf2hhlh075hr6bjdkxz0j0nd"; depends=[]; }; subscore = derive2 { name="subscore"; version="3.1"; sha256="1hb4ci62hxffz09sz0i27jfw7xn0pca87kiq6damz5zi418csa4v"; depends=[boot cocor CTT irtoys ltm sirt]; }; - subscreen = derive2 { name="subscreen"; version="2.0.1"; sha256="0w1y60fzwf59ykcmk6yvdi4awqm8azpm0b288rjx1p0vzwl3i8hj"; depends=[bsplus colourpicker data_table dplyr DT jsonlite plyr randomForestSRC shiny shinyjs V8]; }; + subscreen = derive2 { name="subscreen"; version="3.0.0"; sha256="1q87hshf97ipfyp7k2cdb4nk0rl1m2kl51pynlgvjxai2da8vmvv"; depends=[bsplus colourpicker data_table dplyr DT jsonlite plyr purrr randomForestSRC shiny shinyjs shinyWidgets V8]; }; subselect = derive2 { name="subselect"; version="0.15.2"; sha256="0ggpm5bq4ncx4302855s8x1nj0afjizmi81cg6b7xc7rvpirw0fq"; depends=[corpcor ISwR MASS]; }; subspace = derive2 { name="subspace"; version="1.0.4"; sha256="0p2j0lnwj3ym1v4xla6r97zjikb8alnibdc690xn9c0z21hmv43v"; depends=[colorspace ggvis rJava stringr]; }; - subtee = derive2 { name="subtee"; version="0.3-5"; sha256="14pvfghsd17n9qkznik4vdalqfv5ykgqrhk2g33idl8chi9q7jjn"; depends=[ggplot2 MASS matrixStats survival]; }; subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; }; - suddengains = derive2 { name="suddengains"; version="0.4.3"; sha256="1y6lan63q8jyyy37s4nq5kzrah63ycbwd1id7f6rb4rizb1sg0vn"; depends=[dplyr ggplot2 ggrepel magrittr psych readr rlang stringr tibble tidyr]; }; + suddengains = derive2 { name="suddengains"; version="0.4.4"; sha256="160jna9imnpy91f6pa881w6wlrwy59db0nijrn1sf5ym1cmh5gz5"; depends=[dplyr forcats ggplot2 ggrepel magrittr naniar patchwork psych readr rlang scales stringr tibble tidyr]; }; sudoku = derive2 { name="sudoku"; version="2.6"; sha256="13j7m06m38s654wn75kbbrin5nqda4faiawlsharxgrljcibcbrk"; depends=[]; }; sudokuAlt = derive2 { name="sudokuAlt"; version="0.2-1"; sha256="1y3li64xqag2ia8dg7q49jmlb1awl92rz6xa9zsbf0s9jman9wj9"; depends=[magrittr]; }; - sugarbag = derive2 { name="sugarbag"; version="0.1.2"; sha256="0aikbcdnwvrwvhcchjic9x1r4xh00z8hzq7dc93ykg4wlggs5rx7"; depends=[dplyr geosphere lwgeom purrr rlang rmapshaper sf tibble tidyr]; }; sugrrants = derive2 { name="sugrrants"; version="0.2.7"; sha256="1clad4pafj3cf9ra48zf4bm6vvgb3ys7jg4m4qp5k3w4v81qdrnj"; depends=[dplyr ggplot2 gtable lubridate rlang]; }; sumFREGAT = derive2 { name="sumFREGAT"; version="1.1.0"; sha256="1ycdnf5ghrv3czi4lh5yc8n8690m3b8i85s46k7lya2k0rasvac4"; depends=[GBJ Matrix seqminer]; }; summariser = derive2 { name="summariser"; version="2.3.0"; sha256="0zliqy8dlcr2yy4ky8k68qn256xvpla8fcv7via19y40bmla37ic"; depends=[dplyr]; }; summarytools = derive2 { name="summarytools"; version="0.9.6"; sha256="03pcb2ild1rb9f15yq8b68p9bg10z5wk2x7ahgyzkwdh5f81vbq2"; depends=[base64enc checkmate dplyr htmltools lubridate magick matrixStats pander pryr rapportools tibble tidyr]; }; - sunburstR = derive2 { name="sunburstR"; version="2.1.3"; sha256="1zxy1zyi8sp26vicxjh7jx167qwnmvj1h6hpyj6398cbzcx7dvy7"; depends=[d3r dplyr htmltools htmlwidgets]; }; + sunburstR = derive2 { name="sunburstR"; version="2.1.4"; sha256="1vnh2bylqzlp3av64x2b42ysw1s3i4jvk46wbc7231rapfl9aq41"; depends=[d3r dplyr htmltools htmlwidgets]; }; suncalc = derive2 { name="suncalc"; version="0.5.0"; sha256="1chkl297km313m89h9mbp7vnpz188fhzz5dn8x5cjkqy0mm6c0qc"; depends=[data_table lubridate magrittr]; }; - sundialr = derive2 { name="sundialr"; version="0.1.3"; sha256="1bpqfxbg187g113nzsgk5pnfw9ldg9v7x52frrw8wjjs8b3c0v8z"; depends=[Rcpp]; }; + sundialr = derive2 { name="sundialr"; version="0.1.4"; sha256="03gvcks5i8fh8x8p4zimn4xz3x8b0ai1wmjyx9zis82rdgaa0pg3"; depends=[Rcpp RcppArmadillo]; }; supc = derive2 { name="supc"; version="0.2.2"; sha256="0b7safpg766mzi2qiwyyf9wn5pcpcb9w7dn5qb3kjalijvcqz7mp"; depends=[BH Rcpp]; }; supclust = derive2 { name="supclust"; version="1.0-7"; sha256="0437pccagvqv6ikdsgzpif9yyiv6p24lhn5frk6yqby2asj09727"; depends=[class rpart]; }; supcluster = derive2 { name="supcluster"; version="1.0"; sha256="1rkd4bpzzvzbmqaj907pqv53hxcgic0jklbsf5iayf0ra768b5w6"; depends=[gtools mvtnorm]; }; @@ -14344,17 +14885,19 @@ in with self; { superbiclust = derive2 { name="superbiclust"; version="1.1"; sha256="1gzjbzbl8y1nzdfhyd6dlrwjq8mwj43a26qav84s1bdzwx6dra48"; depends=[biclust fabia Matrix]; }; superdiag = derive2 { name="superdiag"; version="1.1"; sha256="0pa3mv74riabpm7j4587zww2364fszzlw48ijj1apcgz8y6pyqbw"; depends=[boa coda]; }; superheat = derive2 { name="superheat"; version="0.1.0"; sha256="01v8s6px1k5fajlm6py3ksr1i853kwwlky1yryzhy3p1cxhwgg83"; depends=[dplyr ggdendro ggplot2 gtable magrittr plyr scales]; }; - superml = derive2 { name="superml"; version="0.5.2"; sha256="1852s89yy4nv4aq1wi2ccj1yyvc0xq43ggxgjrr0ynjbvl209b7x"; depends=[assertthat BH data_table doParallel Metrics R6 Rcpp]; }; + superml = derive2 { name="superml"; version="0.5.3"; sha256="1k0hcjspv0q6wg0yarvgjs7ql7d587nijicmz3lfhpph2n3hghvb"; depends=[assertthat BH data_table Metrics R6 Rcpp RcppArmadillo]; }; supernova = derive2 { name="supernova"; version="2.1.1"; sha256="1vjx0mfnqksgvcgn8hfvpx8j3q8791yifdsaqjqkhc7h56r9gcc5"; depends=[magrittr stringr]; }; superpc = derive2 { name="superpc"; version="1.09"; sha256="1p3xlg2n7p57n54g2w4frfrng5vjh97kp6ax4mrgvj3pqmd1m69z"; depends=[survival]; }; supervisedPRIM = derive2 { name="supervisedPRIM"; version="2.0.0"; sha256="1j5gsy119pvrhkkg048lyk6hjvn9x1bhmfy5g824gj3k1w5slrib"; depends=[prim]; }; - suppdata = derive2 { name="suppdata"; version="1.1-1"; sha256="1sysd5w59y9hkm1ab8m9i1d976dv6cxchssc86s27bsibhsj2blc"; depends=[httr jsonlite rcrossref xml2]; }; + suppdata = derive2 { name="suppdata"; version="1.1-3"; sha256="0nckhab2f5s4kv6n96l3z7cgsa9v423vl0jhlf1pakr25x9n1x8q"; depends=[httr jsonlite rcrossref xml2]; }; support_BWS = derive2 { name="support.BWS"; version="0.4-1"; sha256="0lfjcwgq74zmgrzybrxj4prvdy2qjlflxsqli7kslymfc653g5qa"; depends=[]; }; support_BWS2 = derive2 { name="support.BWS2"; version="0.3-0"; sha256="0k9yvg0n4lzsq43r53r9f70hq1q3zfljjafj9ds2p3c6qzgs9chi"; depends=[]; }; support_BWS3 = derive2 { name="support.BWS3"; version="0.2-0"; sha256="012kcvscz7m2is92r71731zc7xnp7pwyx30vivwjazrigp9bq1kl"; depends=[]; }; support_CEs = derive2 { name="support.CEs"; version="0.4-1"; sha256="1rbyl7v6m07dsp08kkk9020bh39rhx89q7d05rc5kxb6f7y66jyz"; depends=[DoE_base MASS RCurl simex XML]; }; supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; }; - sur = derive2 { name="sur"; version="1.0.2"; sha256="13mkn153x9sgkmj2vchma5qz1zggxw5vf28v8sfbg0n77f4wjc1p"; depends=[learnr]; }; + supreme = derive2 { name="supreme"; version="1.1.0"; sha256="0y5kd911f7h754ppdpw94qw3r8vzz3yhyj5b99h3h96iifydlik6"; depends=[nomnoml shiny yaml]; }; + sur = derive2 { name="sur"; version="1.0.3"; sha256="1ndk2csh1k7h1ydjq4i1vc9lghqij1z1xnqqrs0p5fj0xz1ycims"; depends=[learnr]; }; + surbayes = derive2 { name="surbayes"; version="0.1.1"; sha256="0vkm8hfa3b7kwqasdy3v1kprr7j3pwv9cgn6bgdsswy110ly404r"; depends=[Matrix Rcpp RcppArmadillo rlist]; }; sure = derive2 { name="sure"; version="0.2.0"; sha256="0gwr2j321i2vq98rin5b1m4sl123dm1nih1ghcmj0zd1wd6x5x54"; depends=[ggplot2 goftest gridExtra]; }; surrosurv = derive2 { name="surrosurv"; version="1.1.25"; sha256="05s1skjp1vzwai2nfw65ff4q2qhbj596lhfvzd1gdrbs39r90hxh"; depends=[copula eha lme4 MASS Matrix msm mvmeta optextras optimx parfm SurvCorr survival]; }; surrosurvROC = derive2 { name="surrosurvROC"; version="0.1.0"; sha256="1dpqr9dqzckgvdfrb2ndxazra0lbp6db9wbjch4vig3kyz6nyw4y"; depends=[survival]; }; @@ -14365,17 +14908,19 @@ in with self; { survC1 = derive2 { name="survC1"; version="1.0-2"; sha256="1bidjhq3k5ab7gqj1b2afngip7pp6c9c7q0m6ww7h7i2vg505l7v"; depends=[survival]; }; survCurve = derive2 { name="survCurve"; version="1.0"; sha256="0zspyxzn99ljiqp1111202714rqs4vg6j2rv66qv8ilxajvdxxas"; depends=[survival]; }; survELtest = derive2 { name="survELtest"; version="2.0.1"; sha256="03jnj88z45iw9v1628bz99608q2jwbqw6cfsvqal2jj4392fz428"; depends=[Iso nloptr plyr survival]; }; - survHE = derive2 { name="survHE"; version="1.0.65"; sha256="0phhcn3gm5l2q8q4j7v8x7bsbk5a8ivqjvyxh45vgh5lrg6zpqg1"; depends=[BH flexsurv Rcpp RcppEigen rms rstan StanHeaders xlsx]; }; + survHE = derive2 { name="survHE"; version="1.1"; sha256="0q8mjyms2bivxh59fgl86l3nzrgysysahfpiknqymhk32y80has6"; depends=[BH flexsurv Rcpp RcppEigen rms rstan StanHeaders xlsx]; }; survIDINRI = derive2 { name="survIDINRI"; version="1.1-1"; sha256="03lsypx189zm28gv764gdq24a18jj3kpdk91ssa501qxj5jv7v29"; depends=[survC1 survival]; }; survJamda = derive2 { name="survJamda"; version="1.1.4"; sha256="14ly1g548ysm8jgsyrhj12zmd6i2lca7rsgby3jbwikyqyk1mx5q"; depends=[ecodist survcomp survival survivalROC survJamda_data]; }; survJamda_data = derive2 { name="survJamda.data"; version="1.0.2"; sha256="0a010v2ar48i5m0jiqjvdyqm93ckfgfmcmym9a02h0rclnizd75r"; depends=[]; }; survMisc = derive2 { name="survMisc"; version="0.5.5"; sha256="00nvvl8gz4477ab24rd0xvfksm8msv8h021b9ld5c9cizc41n2bm"; depends=[data_table ggplot2 gridExtra km_ci KMsurv knitr survival xtable zoo]; }; - survParamSim = derive2 { name="survParamSim"; version="0.1.0"; sha256="11rp49wrqw9z4cy2iwm0gn92hi88a0n3jy34b29yj5f9waz0andf"; depends=[dplyr forcats ggplot2 magrittr mvtnorm purrr rlang survival tibble tidyr]; }; - survPen = derive2 { name="survPen"; version="1.3.0"; sha256="1yvsns9md9g94932q79y0icwd5xvnjx4a5fs01vxi5mfqm1drsmm"; depends=[Rcpp RcppEigen statmod]; }; + survParamSim = derive2 { name="survParamSim"; version="0.1.2"; sha256="06x98085phmlf9vbpx0nh6b03h42hxcv0jqlbszz65pvzalgjqfh"; depends=[dplyr forcats ggplot2 magrittr mvtnorm purrr rlang survival tibble tidyr]; }; + survPen = derive2 { name="survPen"; version="1.5.0"; sha256="1cxjv0mf28dcv6zx0lj38gs7clkvmmd1h56jx0kmlrj9y62i6k7l"; depends=[Rcpp RcppEigen statmod]; }; survPresmooth = derive2 { name="survPresmooth"; version="1.1-10"; sha256="0m1037v857g140lypck5zq2zf52rkdxzaqlj9kjn7h7lp6gif6ia"; depends=[]; }; - survRM2 = derive2 { name="survRM2"; version="1.0-2"; sha256="0pvp65c1kkbkcci4l3cvq4a5krmv58jwb9abz5225ql6jyawzlsw"; depends=[survival]; }; + survRM2 = derive2 { name="survRM2"; version="1.0-3"; sha256="1x526ax39xx4zbhr6bdzphj4sljnl070vm0qh1479r1gj0vmmhif"; depends=[survival]; }; survRM2adapt = derive2 { name="survRM2adapt"; version="1.0-1"; sha256="1r3jvjbc2sb7b00s95b3sdx4d99rmrnd573fx1n4914ydiggi9nn"; depends=[survival]; }; + survRM2perm = derive2 { name="survRM2perm"; version="0.1.0"; sha256="0js9sgslxzzs8k94k9kdmbmwp1ckk9mlr8sndk17dg24raks4zmz"; depends=[survival]; }; survSNP = derive2 { name="survSNP"; version="0.24"; sha256="0mzwcp8zfqvsiapa446si9qb6wyymnw5zj6acj6f2cfjpyi76k4w"; depends=[foreach lattice Rcpp survival xtable]; }; + survSens = derive2 { name="survSens"; version="0.1.0"; sha256="1s4s5l31yps93s2zdxpidkdg8kmmwj6vb3zfndmnxvc07arwhvbv"; depends=[directlabels ggplot2 survival]; }; surveillance = derive2 { name="surveillance"; version="1.18.0"; sha256="01iy6dlkd5w9191vr3agm3fgl3vbh2yaan5rsgn0ki741gf2zdag"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat xtable]; }; survexp_fr = derive2 { name="survexp.fr"; version="1.0"; sha256="12rjpnih0xld4dg5gl7gwxdxmrdmyzsymm7j05v98ynldd1jkjl8"; depends=[survival]; }; survey = derive2 { name="survey"; version="4.0"; sha256="1q9x0s86s72gl43zj49gypg6jj2b78xjvxr4lmy5147s9h7z8lxh"; depends=[lattice Matrix minqa mitools numDeriv survival]; }; @@ -14383,19 +14928,17 @@ in with self; { surveydata = derive2 { name="surveydata"; version="0.2.5"; sha256="07k54282y69sl4z85v0in6v4f3dpk3i807n5ysyb54p6j1gy95al"; depends=[assertthat dplyr DT ggplot2 magrittr purrr rlang scales tidyr]; }; surveyeditor = derive2 { name="surveyeditor"; version="1.0"; sha256="073219bcn1hlxl9ql6gncfvgn0m37pz5sb7h94nq6lf35dymq5zq"; depends=[]; }; surveyoutliers = derive2 { name="surveyoutliers"; version="0.1"; sha256="03nqw0zir3x57gg23hgsr2s99pv958kfsygqfwly96rvfdhr5p3v"; depends=[]; }; - surveyplanning = derive2 { name="surveyplanning"; version="3.0"; sha256="1wnjizd5n5lyp8nw6srplrw7swrrivmbcphdvgaa9q1y8lkpq5w0"; depends=[data_table laeken]; }; + surveyplanning = derive2 { name="surveyplanning"; version="4.0"; sha256="19ydgcwyvkhknf4qmlw7j25skcj9a4rd6s8j5n7bdqpljl60zync"; depends=[data_table laeken]; }; surveysd = derive2 { name="surveysd"; version="1.2.0"; sha256="1w4cd52gdl65p16rza50n7pk2xfx3kxd1k16pr67j0pnyl7h2fqk"; depends=[data_table dplyr ggplot2 laeken matrixStats Rcpp]; }; survidm = derive2 { name="survidm"; version="1.2.0"; sha256="0dgcxhf8x1aavr4n4aqanfc23zd62dyk3h05sa04611h6n9l8j9c"; depends=[doParallel doRNG foreach KernSmooth np survival TPmsm]; }; - survival = derive2 { name="survival"; version="3.1-12"; sha256="07zj3gpwncw89hbiwjb6ih9axv5zwdqnbgz9yw9xzws6nrpdcbmn"; depends=[Matrix]; }; - survivalAnalysis = derive2 { name="survivalAnalysis"; version="0.1.2"; sha256="17pywrb10ql4li2jb3y3j0wy0x7wicq1x395a6igxy257kmblw18"; depends=[cowplot dplyr forcats ggplot2 gridExtra magrittr purrr rlang scales stringr survival survminer tibble tidyr tidytidbits]; }; + survival = derive2 { name="survival"; version="3.2-3"; sha256="07h76r2y23w889257krlijcw4n4d7ssx92x7i5qb1xyv5gyvl3rx"; depends=[Matrix]; }; + survivalAnalysis = derive2 { name="survivalAnalysis"; version="0.1.3"; sha256="1jxlv0rcnrw4il17q632dsj1mxn71ql32cmcdhv4b7mywgcibqw5"; depends=[cowplot dplyr forcats ggplot2 gridExtra magrittr purrr rlang scales stringr survival survminer tibble tidyr tidytidbits]; }; survivalMPL = derive2 { name="survivalMPL"; version="0.2"; sha256="05bfa9fx841kh9g2jcs1dimsxkjnf4bxgamcnjpisx3a644c1gkn"; depends=[MASS survival]; }; survivalROC = derive2 { name="survivalROC"; version="1.0.3"; sha256="0wnd65ff5w679hxa1zrpfrx9qg47q21pjxppsga6m3h4iq1yfj8l"; depends=[]; }; survivalsvm = derive2 { name="survivalsvm"; version="0.0.5"; sha256="1b4hrdrqq1z0kfn8vpdwg54388m25df2s6w9i574x3mkxkmkjkga"; depends=[Hmisc kernlab Matrix pracma quadprog survival]; }; - survminer = derive2 { name="survminer"; version="0.4.6"; sha256="0c5q5pp78wsv00rrbhbfl1yrdng8n7z1mgqlrqzgb0pswlvv2w3z"; depends=[broom dplyr ggplot2 ggpubr gridExtra magrittr maxstat purrr scales survival survMisc tibble tidyr]; }; + survminer = derive2 { name="survminer"; version="0.4.8"; sha256="1niysd89mxb2a6ncvzm1s6xgfvq3psba65af0whh2p56r2hwrwff"; depends=[broom dplyr ggplot2 ggpubr gridExtra magrittr maxstat purrr rlang scales survival survMisc tibble tidyr]; }; survsim = derive2 { name="survsim"; version="1.1.5"; sha256="0194w1h3v4p546wibp3xyhy2r84w3p9r6ggzhlf11v8467mjy0l9"; depends=[eha statmod]; }; survtmle = derive2 { name="survtmle"; version="1.1.1"; sha256="1l13rvwq4915ij2a55fxdj3b3wkgjca1fbqzcgkjlpzkcn97k1nj"; depends=[dplyr ggplot2 ggsci Matrix plyr speedglm stringr SuperLearner tidyr]; }; - survutils = derive2 { name="survutils"; version="1.0.2"; sha256="1ws4r5chz0cbf6vjmlj2xv9hmr968xyw8dc5g3j937xpbz40i75h"; depends=[broom dplyr ggplot2 glue lazyeval magrittr purrr survC1 survival]; }; - survxai = derive2 { name="survxai"; version="0.2.0"; sha256="09sk7i0bsk5ql8dibqyykyv95i945bf43xpr4gv22w73zwc0n8hh"; depends=[breakDown ggplot2 pec prodlim scales survival survminer]; }; sutteForecastR = derive2 { name="sutteForecastR"; version="0.1"; sha256="13dd0v3l3s7xb1wnpf6qvnvclzab87831z8bsxsq53vpb26xcw1b"; depends=[forecast forecastHybrid fracdiff robets]; }; svDialogs = derive2 { name="svDialogs"; version="1.0.0"; sha256="0xqppydfawnwk84kb5qiybwbcmv38vn4imgz01mz2pnq4xb80p97"; depends=[rstudioapi svGUI]; }; svDialogstcltk = derive2 { name="svDialogstcltk"; version="0.9-4"; sha256="16166f8i6nsg7palqmnlp5b9s91d6ja9n0zm6rcvd2fwnw2ljkr4"; depends=[svDialogs svGUI]; }; @@ -14404,12 +14947,11 @@ in with self; { svIDE = derive2 { name="svIDE"; version="0.9-54"; sha256="1a03xpjx22xhxfqkgcm1pmal0dlp544hvnckj0p6sy4y56hmsfik"; depends=[svMisc XML]; }; svKomodo = derive2 { name="svKomodo"; version="0.9-63"; sha256="0x2774lhckhg8kw6plsn6dpks3b3fisb0psa03p7di7jx8vrkg5n"; depends=[svMisc]; }; svMisc = derive2 { name="svMisc"; version="1.1.0"; sha256="01r2a73wx2sh1njky961fxabx5wgddqqjqba6vjg0f3h8r3abmn2"; depends=[]; }; - svSocket = derive2 { name="svSocket"; version="0.9-57"; sha256="0id93b500iybza6sbn60ybm91mkh5cjpvhypqs4f3dv13m6blb9j"; depends=[svMisc]; }; + svSocket = derive2 { name="svSocket"; version="1.0.0"; sha256="06zq5h3y0mln2gv51dk42kalf62fl6s9183zipq77r1b0yvyqv7w"; depends=[svMisc]; }; svSweave = derive2 { name="svSweave"; version="0.9-8"; sha256="0zkng8lwdpjdbic9f6jnk2ndxbch2kjyz71ds1bksvd3kmk03lks"; depends=[knitr]; }; svTools = derive2 { name="svTools"; version="0.9-5"; sha256="040wr8cr2p35x6pr515bprmsw8ysajx4df5f2njz3ily61xf9szi"; depends=[codetools svMisc]; }; svUnit = derive2 { name="svUnit"; version="1.0.3"; sha256="0awz9ks0y1n98y9nq6rq65yj7y22z5q4a5w5qhkszkgc9669q1dw"; depends=[]; }; svWidgets = derive2 { name="svWidgets"; version="0.9-45"; sha256="08cpsy4abypjnv33arsgxk5i0gpdvdzj60wa1b22ca1n7d35mc80"; depends=[svMisc]; }; - svapls = derive2 { name="svapls"; version="1.4"; sha256="12gk8wrgp556phdv89jqza22zmsnachsydr5vlz38s664d2lplbg"; depends=[class pls]; }; svars = derive2 { name="svars"; version="1.3.3"; sha256="1npjnxbxpidcpifgh2k6xs7drhc075cnzd7mb7wnxi9yz0v10fmr"; depends=[clue copula DEoptim expm ggplot2 pbapply Rcpp RcppArmadillo reshape2 steadyICA strucchange vars zoo]; }; svcm = derive2 { name="svcm"; version="0.1.2"; sha256="1lkik65md8xdxzkmi990dvmbkc6zwkyxv8maypv2vbi2x534jkhl"; depends=[Matrix]; }; svd = derive2 { name="svd"; version="0.5"; sha256="18bi42pgml9i8jflfk29ws0bfblkj3f69z9p9mkd0m8kcx4d8hnh"; depends=[]; }; @@ -14417,8 +14959,8 @@ in with self; { svenssonm = derive2 { name="svenssonm"; version="0.1.0"; sha256="0pvay9vfrcafaq270pq6glp2b74zdfgldksl13cwdb0wk7qx7731"; depends=[]; }; svgPanZoom = derive2 { name="svgPanZoom"; version="0.3.4"; sha256="1iglgwbyxf5q4716h9ba2cfmxh1qq16zwy54krnawg4580v8ydh2"; depends=[htmlwidgets]; }; svgViewR = derive2 { name="svgViewR"; version="1.4"; sha256="00nm2sdgil2kw6f19sy03m8452zia47bv1bkynxw3q7vck3vb3vx"; depends=[Rcpp rjson Rook]; }; - svglite = derive2 { name="svglite"; version="1.2.3"; sha256="1zivykbi1pxdxhrkc1if1ihdn5p27j0nai2q0abca1dwry3wg2yl"; depends=[BH gdtools Rcpp]; }; - svmpath = derive2 { name="svmpath"; version="0.955"; sha256="02j5xs4gg8k16imnwk6aram168cv1dqdrky3bszyc98l7xd0nlrj"; depends=[]; }; + svglite = derive2 { name="svglite"; version="1.2.3.2"; sha256="00n8bg4iligl0h24v42cka417w26zmcxrr4r6k8wdal1riwhgmi5"; depends=[BH gdtools Rcpp]; }; + svmpath = derive2 { name="svmpath"; version="0.970"; sha256="19b5hfqqsh072l5mbkafm5pjd6qhyj20qd2vq6zl5jjmc45r72w1"; depends=[kernlab]; }; svmplus = derive2 { name="svmplus"; version="1.0.1"; sha256="08cfywrbaxyacqd3l75lysb23ahqbs80959iqkjbb125aafmhvni"; depends=[MASS Matrix quadprog]; }; svrpath = derive2 { name="svrpath"; version="0.1.2"; sha256="18h40555jmqpbsnhlwkvc5fl7d0r2bgscdv8amjvhjxmx9y952a2"; depends=[quadprog svmpath]; }; svs = derive2 { name="svs"; version="2.0.0"; sha256="1kcrdgg0pw5ypjgl59wn66c3ipinamcnd4752hjnfrf62pkc6fgw"; depends=[gtools Matrix]; }; @@ -14431,20 +14973,23 @@ in with self; { swapClass = derive2 { name="swapClass"; version="1.0.1"; sha256="0wg6km261xdywakxi64dw4wwprbrkw217q4c6622z0mgm9sjgpym"; depends=[inline]; }; swatches = derive2 { name="swatches"; version="0.5.0"; sha256="1kivscgka8gn44rjj0s5sjan1s04znnyn0nd37a74zaik0hm8zs0"; depends=[colorspace httr pack stringr xml2]; }; swdft = derive2 { name="swdft"; version="1.0.0"; sha256="0529rw8nsl48hwiy741alvrzg5d5q1nhnjshrsfwchm5kdv0igva"; depends=[]; }; - sweep = derive2 { name="sweep"; version="0.2.2"; sha256="12mbkkinvv11s96bn61vww79xjivjshhg9m3lmza5y0512zm89k5"; depends=[broom dplyr forecast lazyeval lubridate tibble tidyr timetk]; }; + sweep = derive2 { name="sweep"; version="0.2.3"; sha256="1705mcp9p5h50ifqjjwx61z5wl5izv889nxcgdkx1i0dlcr61l2a"; depends=[broom dplyr forecast lubridate rlang tibble tidyr timetk]; }; sweidnumbr = derive2 { name="sweidnumbr"; version="1.4.2"; sha256="0zzjvwd60w9b5ybsb72aqa42sx6al4ymr591j3zryxgpl6rms5rh"; depends=[checkmate lubridate stringr]; }; swephR = derive2 { name="swephR"; version="0.3.0"; sha256="0fk5wih3i5vpkcc9y1n30xwc1hyqgfgnad9jkdgdx0m31pn1y9j5"; depends=[Rcpp]; }; + swfscDAS = derive2 { name="swfscDAS"; version="0.4.0"; sha256="0sjw3acf60yawmcwmql21im1q5lbn83jnblcxmj2az93abzbjqfl"; depends=[dplyr lubridate magrittr purrr readr rlang sf swfscMisc tidyr]; }; swfscMisc = derive2 { name="swfscMisc"; version="1.3"; sha256="03wzjricpgf55yfwmj4vjcvz59yxcipfp4bsjddzw65glasa9d1s"; depends=[dplyr ggplot2 ggrepel magrittr mapdata maps reshape2 rlang spatstat tibble tidyr]; }; swgee = derive2 { name="swgee"; version="1.4"; sha256="1a6zr4nkpj52b0rk01qbwzi8y0c798wlxzw69wyyv576k148rgfq"; depends=[gee geepack mvtnorm]; }; swirl = derive2 { name="swirl"; version="2.4.5"; sha256="0cqyn2rnqfkb2wza4zdr1kcms5l0igbq79xh5i7765agdday2z9w"; depends=[digest httr RCurl stringr testthat yaml]; }; swirlify = derive2 { name="swirlify"; version="0.5.3"; sha256="1bpg6yz2adgspjlwsf2q83j1bq0iyvp9938smgc41861nsclngwr"; depends=[base64enc readr rmarkdown shiny shinyAce stringr swirl whisker yaml]; }; swissMrP = derive2 { name="swissMrP"; version="0.62"; sha256="1vy6h6c4v49zlsli77ilj4df8cfh67rqmki71v6j1aqw6kf3b649"; depends=[arm blme lme4 maptools sp]; }; + swissdd = derive2 { name="swissdd"; version="1.0.3"; sha256="0kj466fp9i3yv8925wpy3vff8dnzdzhcjgk5ncp1vd13cxyfd38y"; depends=[curl dplyr jsonlite magrittr purrr tibble tidyr]; }; swissparl = derive2 { name="swissparl"; version="0.2.1"; sha256="0181ls1gw68kfz3yqf8m2nwhah87i9m164rlbycy1kxq9adi93cs"; depends=[crayon dplyr ggplot2 httr jsonlite lubridate magrittr purrr stringr tibble tidyr]; }; + switchcase = derive2 { name="switchcase"; version="0.1.1"; sha256="0h31nzyf7dzalgl65cw0k1fxylbmx78l45r5id2wcqdym23dv9a9"; depends=[]; }; switchnpreg = derive2 { name="switchnpreg"; version="0.8-0"; sha256="1vaanz01vd62ds2g2xv4kjlnvp13h59n8yqikwx07293ixd4qhpw"; depends=[expm fda HiddenMarkov MASS]; }; switchr = derive2 { name="switchr"; version="0.14.3"; sha256="1aw9n6hh62qvggl1flpxfyqgp4sj6vj1mlfqfhx923hl53c7cr31"; depends=[RCurl RJSONIO]; }; swmmr = derive2 { name="swmmr"; version="0.9.1"; sha256="140sx0y00ngxsyn7n1l0aay7vk2jk8hf81aiwh46k761cpc5y28d"; depends=[dplyr purrr Rcpp readr tibble tidyr xts zoo]; }; sybil = derive2 { name="sybil"; version="2.1.5"; sha256="1biy1cc87g7adfglzp2mq6ca5sfp1ljq087id0xqdmrwz0650maq"; depends=[lattice Matrix]; }; - sybilDynFBA = derive2 { name="sybilDynFBA"; version="1.0.1"; sha256="1zyhvlzkcwnq3sh6gvi0v1crq94mr16bc5jnh0g9c8rbdl4v8r4x"; depends=[sybil]; }; + sybilDynFBA = derive2 { name="sybilDynFBA"; version="1.0.2"; sha256="0351qlvyynygjf43q93gkqzzaff3v6gynvbks1ix1mank3afn226"; depends=[sybil]; }; sybilSBML = derive2 { name="sybilSBML"; version="3.1.2"; sha256="1qvv6fr0zslfwlzx1zbd7rszh5x7zv3svvqrr8896inxh122mhzs"; depends=[Matrix sybil]; }; sybilccFBA = derive2 { name="sybilccFBA"; version="3.0.1"; sha256="1y94d6ajf0l492nrd8wsz3b6x724zcyhipasgyx65nx3sgha6yp8"; depends=[Matrix sybil]; }; sybilcycleFreeFlux = derive2 { name="sybilcycleFreeFlux"; version="2.0.1"; sha256="0j1qmf5apb6k0ga5ki7wxbbq1k8x7kv8wcnf85zcx0117fjkxfng"; depends=[MASS Matrix sybil]; }; @@ -14453,30 +14998,35 @@ in with self; { sylly = derive2 { name="sylly"; version="0.1-5"; sha256="01c7mpsk32kcsjyzzv52bn8bj28lqbmyhhfa1cwhphva5c5nkqwx"; depends=[]; }; sylly_en = derive2 { name="sylly.en"; version="0.1-3"; sha256="0jw48qin172vv7skcpvcpi9wzgav5l9afzb09hhgcxvivbz6dl93"; depends=[sylly]; }; sym_arma = derive2 { name="sym.arma"; version="1.0"; sha256="13fhmgzd50mwlnz9m6nnn4arr4jdqf5h7dgli5lk08da9wx6cy69"; depends=[]; }; - symDMatrix = derive2 { name="symDMatrix"; version="2.0.2"; sha256="1lf0yhid47107c2vnr4g7xz4hrjb2cgr5zpgik4xf5gypli6xh6x"; depends=[bit ff LinkedMatrix]; }; + symDMatrix = derive2 { name="symDMatrix"; version="2.1.1"; sha256="0xmpw37qkbadqp1idv8qmazdmmv0sd4fwgihg1b97hxzqhsxw0fh"; depends=[bit ff LinkedMatrix]; }; + symSEM = derive2 { name="symSEM"; version="0.1"; sha256="084c47fkpgxjafx856d9xjijjz4l1da76bdqq63fvmhhiz17q8gs"; depends=[metaSEM mvtnorm OpenMx Ryacas]; }; symbolicDA = derive2 { name="symbolicDA"; version="0.6-2"; sha256="0fd36dndzs0n0xwz38px5182gc6ng174n433rgch1s1g6bh8dn4s"; depends=[ade4 cluster clusterSim e1071 rgl RSDA shapes XML]; }; symbols = derive2 { name="symbols"; version="1.1"; sha256="1234rx3divhg60p0h0zn11viqn51fm6b8876m6rip2i6z8vrg319"; depends=[shape]; }; + symengine = derive2 { name="symengine"; version="0.1.5"; sha256="1n8gxazjfjfas8463qa00zs6ww1vzv059d9aakvh1pads24l8v6l"; depends=[Rcpp]; }; symmetry = derive2 { name="symmetry"; version="0.2.1"; sha256="041vxbva5kaywpn4y7kjwlc2cj56iyvd51iv5198dv280jfcnjv9"; depends=[Rcpp RcppArmadillo Rdpack]; }; symmoments = derive2 { name="symmoments"; version="1.2.1"; sha256="0wl68nsvydfhlbyaj54alj31dphqigyp1s4h2xdapxj4zvwf2sws"; depends=[combinat cubature multipol mvtnorm]; }; syn = derive2 { name="syn"; version="0.1.0"; sha256="12apdjbsazwfxizsw4dj0y3vkdjmki8dzpyv3bi9gnhpysdd1jzx"; depends=[]; }; synRNASeqNet = derive2 { name="synRNASeqNet"; version="1.0"; sha256="05ncwbv8kvvhqqrxa8qq7s0jc6krs5a56ph04z50iwgd91rzyi7x"; depends=[GenKern igraph KernSmooth parmigene]; }; synchronicity = derive2 { name="synchronicity"; version="1.3.5"; sha256="1kgsk64aifjm3mfj102y3va7x1abypq2zi0cqbnjhl8fqyzp69hx"; depends=[BH bigmemory_sri Rcpp uuid]; }; synchrony = derive2 { name="synchrony"; version="0.3.8"; sha256="1zpxg4dkxnvafiyp0j00wig5ymj10bzfg2376x56rzpnabhg57hi"; depends=[]; }; + synfd = derive2 { name="synfd"; version="0.1.3"; sha256="1h8vfrfw00449vjbj6z4y7m5p7rxzvqjcykyxw5sb473f63gr5px"; depends=[L1pack Rdpack]; }; synlik = derive2 { name="synlik"; version="0.1.2"; sha256="1pscfqg5x7wpq3vp1i7fy29dwa7cw5g3kzxinanwrwbcznv9nyms"; depends=[Matrix Rcpp RcppArmadillo]; }; synoptReg = derive2 { name="synoptReg"; version="1.0.1"; sha256="16ncbxdyqyd0jrsshllv14pgdlkli1ymwjkh4sijnhzk9yhrbb28"; depends=[dplyr ggplot2 lubridate magrittr metR raster RNCEP stringr tibble tidyr]; }; syntaxr = derive2 { name="syntaxr"; version="0.8.0"; sha256="1iik9b3x9jx7w31j7hyi3sixg30l5a6w40svhqj1xlchsk60yykn"; depends=[magrittr]; }; - synthACS = derive2 { name="synthACS"; version="1.5.6"; sha256="02pxvsrg15xsys7iwp1np93yzxr6b00i8y7z0cxq29605n3p6sba"; depends=[acs data_table Rcpp]; }; + synthACS = derive2 { name="synthACS"; version="1.6.0"; sha256="0dwcx2c284fa9d0y7kpai3jpby3drriw9bxbjld8v6lz7af6d9mw"; depends=[acs data_table Rcpp]; }; + synthesisr = derive2 { name="synthesisr"; version="0.3.0"; sha256="0b50d5hfkscggn2f6h8wyljkar08r8cbc0a4l12f809w5hdnjc63"; depends=[stringdist]; }; synthpop = derive2 { name="synthpop"; version="1.5-1"; sha256="0cd9g0aa4598l3gyqpywalmkmvibhqkxhkm2qkln11rkwv12lcyv"; depends=[classInt foreign ggplot2 lattice MASS mipfp nnet party plyr polspline proto randomForest rpart]; }; - sys = derive2 { name="sys"; version="3.3"; sha256="14wvy46i2iz9jn7lj3cvifmps932s3395wq681hniva0f8m7q8d6"; depends=[]; }; - sysfonts = derive2 { name="sysfonts"; version="0.8"; sha256="0wng902plryf2d8fc7k7m3jx11acz51kb2d91cqbyhq7xpk06z43"; depends=[]; }; + sys = derive2 { name="sys"; version="3.4"; sha256="11q4zmx62w44p1j34frwmrsp23mc7l4n354i0zyziw92yax8zy0p"; depends=[]; }; + sysfonts = derive2 { name="sysfonts"; version="0.8.1"; sha256="1xp40hchjfif80a6jj210ghrjcvjjf66vqcssdy7a1j53nl1n994"; depends=[]; }; sysid = derive2 { name="sysid"; version="1.0.4"; sha256="0fr9gf5yjin3zvz850z4r4pqc1r4mwx8d46sl64i4csdm9qnqagy"; depends=[bitops ggplot2 polynom reshape2 signal tframe zoo]; }; syslognet = derive2 { name="syslognet"; version="0.1.2.1"; sha256="0nwni2mn7w43pfasqa2dwy1l6r0ymlkwlsyd5q47fajdr8v1ir0q"; depends=[]; }; systemfit = derive2 { name="systemfit"; version="1.1-24"; sha256="180ah91i98gjswpbkkdjgnc2c9rz3pl5bw035iks92nd5vl6w5wz"; depends=[car lmtest MASS Matrix sandwich]; }; - systemfonts = derive2 { name="systemfonts"; version="0.2.0"; sha256="1aba07djvxqdmnsdbwvzcsbm2fddnhrssa54xyrlviiwsv2c1qsd"; depends=[]; }; + systemfonts = derive2 { name="systemfonts"; version="0.2.3"; sha256="0wf62mfam5zlrck0wrdbyi4hi7pn5j0739rihgp8sj2cjypm2lnb"; depends=[]; }; systemicrisk = derive2 { name="systemicrisk"; version="0.4.2"; sha256="021ypw9fag5kmk2q041pj2jfzgfg640yda7wvh0yzdmg73p6fvsw"; depends=[lpSolve Rcpp]; }; syt = derive2 { name="syt"; version="0.1.0"; sha256="1qagd67wznyc6sfvs22lw2lwnwap1hlpf92i0ck5aif514ysi886"; depends=[Matrix partitions]; }; syuzhet = derive2 { name="syuzhet"; version="1.0.4"; sha256="0wf4rls7v7h7zkq2k550d16aqvaij27iim85cwif7dkbinajfngi"; depends=[dplyr dtt NLP textshape tidyr zoo]; }; tRophicPosition = derive2 { name="tRophicPosition"; version="0.7.7"; sha256="1j06rc5s6jpz8i116m98ygc75sx6lk8jd9gw6fb8q342mbbmqh8h"; depends=[coda data_table ggplot2 gridExtra hdrcde MCMCglmm plyr rjags]; }; + tTOlr = derive2 { name="tTOlr"; version="0.2"; sha256="1fk33vp6y65mls1iczjf63wzj1rl1knbdcbd4rnqqfdcqhibb3p3"; depends=[lattice latticeExtra]; }; taRifx = derive2 { name="taRifx"; version="1.0.6.2"; sha256="05cvjsi65fvy9hg2v3fldzwn1yd2kfirl3ffg9yfajm903dk3l49"; depends=[plyr reshape2]; }; tab = derive2 { name="tab"; version="4.1.1"; sha256="0ds8n6gncidb66in7hlqkcmil5yfsf7ihqvmls789hrm2iz9xlfm"; depends=[dplyr gee knitr MASS survey survival xtable]; }; taber = derive2 { name="taber"; version="0.1.0"; sha256="07a18kn65b4cxxf1z568n7adp6y3qx96nrff3a3714x241sd5p6i"; depends=[dplyr magrittr]; }; @@ -14487,21 +15037,22 @@ in with self; { table1xls = derive2 { name="table1xls"; version="0.4.0"; sha256="0ixbshbp9hkcg12hj32vgb5bp0pj4rbc3i6g1xdg2zhqp7zanics"; depends=[XLConnect]; }; tableHTML = derive2 { name="tableHTML"; version="2.0.0"; sha256="19sa5sda4v5dr449ip9z9ah5hdph9q6vb6zbs93jn4rpkvyijny3"; depends=[htmltools jpeg magrittr png shiny webshot]; }; tableMatrix = derive2 { name="tableMatrix"; version="0.82.0"; sha256="1sskijhbqakamrk2rv7v5zpjsdi8jw0jl2z96l0vhsvsiq0cz1c8"; depends=[data_table]; }; - tableone = derive2 { name="tableone"; version="0.11.1"; sha256="15cpi3255234hc51jcvjijx3yiq086ggbj087bh5hw227gzc3sw9"; depends=[e1071 gmodels labelled lmerTest MASS nlme survey zoo]; }; + tableone = derive2 { name="tableone"; version="0.12.0"; sha256="0pjpsdizpvqn7anyg95d4i7sf6qyqh7svp4a5gsch0r3gmpw2p3a"; depends=[e1071 gmodels labelled MASS nlme survey zoo]; }; tableplot = derive2 { name="tableplot"; version="0.3-5"; sha256="1jkkl2jw7lwm5zkx2yaiwnq1s3li81vidjkyl393g1aqm9jf129l"; depends=[]; }; tablerDash = derive2 { name="tablerDash"; version="0.1.0"; sha256="1mnp6lxa7d669r325aynq1n3f35r9sy4v1fvdh4cymbf33s8mkmm"; depends=[htmltools knitr shiny]; }; - tables = derive2 { name="tables"; version="0.8.8"; sha256="1cgfwrnmgi1jhv9kj918mv0ib75hvprqjg0nb7ppih73kqpaw5m2"; depends=[Hmisc knitr]; }; + tables = derive2 { name="tables"; version="0.9.3"; sha256="0wfn0jlyych6q2vdd2ldidbvdmizvk5vpkgpy4s97f3p42jsjmv2"; depends=[htmltools knitr]; }; tableschema_r = derive2 { name="tableschema.r"; version="1.1.1"; sha256="14cnbijxdhf7qbsiqbk8p516mfh9bgdbcg32vn5pycsp30k78b2h"; depends=[config future httr iterators jsonlite jsonvalidate lubridate purrr R6 RCurl rlist stringr urltools]; }; - tabr = derive2 { name="tabr"; version="0.4.2"; sha256="0c3814dnz1vzgbmm3vp0icnzyaqs1kimqnsp4n8id7zn8vlmp21p"; depends=[crayon dplyr ggplot2 magrittr purrr tibble tidyr]; }; + tabr = derive2 { name="tabr"; version="0.4.3"; sha256="1vya8g0ajh0qsix9vsx0hz796gzfkck1k1kwjy41yb98sz9rbcnf"; depends=[crayon dplyr ggplot2 magrittr purrr tibble tidyr]; }; + tabshiftr = derive2 { name="tabshiftr"; version="0.1.2"; sha256="1b5x9mmc0dcd1nl82wf45xvls685vbqz2qimhx23c4ra55kxpz8n"; depends=[checkmate crayon dplyr magrittr purrr rlang stringr testthat tibble tidyr tidyselect]; }; tabuSearch = derive2 { name="tabuSearch"; version="1.1.1"; sha256="0396a8hla508na1hmyyhfbl8w10dbg810cln2xyhhvxi7rr223dj"; depends=[]; }; - tabula = derive2 { name="tabula"; version="1.5.1"; sha256="0mm08rgqdhc3b68xh9hk4rw4i69gb2c45679zni9kkv48pbxvrh7"; depends=[arkhe ca ggplot2 rlang]; }; - tabularaster = derive2 { name="tabularaster"; version="0.6.0"; sha256="0yaadc4774jwrp38ri6mfnw2x94yhb9kq50bf25naw05g5z6b1d0"; depends=[dplyr fasterize gibble magrittr raster rlang silicate spatstat tibble]; }; + tabularaster = derive2 { name="tabularaster"; version="0.6.5"; sha256="1xx9y324kwyf3iw2r506wb5hpwvxj2z3i43lllqiy3d6ikz73496"; depends=[dplyr fasterize magrittr raster silicate spatstat tibble]; }; + tabularmaps = derive2 { name="tabularmaps"; version="0.1.0"; sha256="07i76n2fpl2ma6jl3zdbay0zmmaaxrxhv1368xm2d575br42nri4"; depends=[ggforce ggplot2 purrr rlang]; }; tabulizer = derive2 { name="tabulizer"; version="0.2.2"; sha256="0zd5cfqwgirqchw1mvziscxvzl8pb1y6rbfywkn9i9pxfydkm5vi"; depends=[png rJava tabulizerjars]; }; tabulizerjars = derive2 { name="tabulizerjars"; version="1.0.1"; sha256="005n2gyzzmq8h0mpj8xs6ri6llzwag7nqzpm4vnzp81vwy8kmf92"; depends=[rJava]; }; tabulog = derive2 { name="tabulog"; version="0.1.1"; sha256="0n6qjd7kmvxx5na71f358pw3bbwa69vh8qjkrs5mkb3izxabcq67"; depends=[yaml]; }; tacmagic = derive2 { name="tacmagic"; version="0.3.0"; sha256="114qxi2ks5v8p7lr2i7fn1wi5lwzw1dpvbbg515gc8yplccpxwny"; depends=[pracma R_matlab]; }; tactile = derive2 { name="tactile"; version="0.2.0"; sha256="0jjfbsadxbf9s6vzi82rw5qa6hdc8iz4jci9xpbzwrjkb90dzd08"; depends=[gridExtra lattice latticeExtra MASS RColorBrewer]; }; - tadaatoolbox = derive2 { name="tadaatoolbox"; version="0.16.1"; sha256="0xqvg73l00kskgg7ipcc19rvi9n5ylwnaph5g5x8iwgim5dhcb9s"; depends=[broom car DescTools ggplot2 magrittr nortest pixiedust pwr viridis]; }; + tadaatoolbox = derive2 { name="tadaatoolbox"; version="0.17.0"; sha256="1mf6mzv84da7f87xy301xpb3rrjrhx1kximqi0310y291v4si13b"; depends=[broom car DescTools ggplot2 magrittr pixiedust viridis]; }; tagcloud = derive2 { name="tagcloud"; version="0.6"; sha256="04zrh029n8pjlxlr6pdd7xhqqhavbrj3fhvhj6ygzlvi2jslxnwl"; depends=[RColorBrewer Rcpp]; }; tailloss = derive2 { name="tailloss"; version="1.0"; sha256="0lmjgjs6d94b70i10vx66fyvlxm5swwqbcjsnqa3lmldzz6m4jc1"; depends=[MASS]; }; tailr = derive2 { name="tailr"; version="0.1.3"; sha256="0agm83zwj6f3bpicbn2pcwira05v2pbv0g7myc1x06jxbw1qbfwp"; depends=[foolbox glue rlang]; }; @@ -14509,28 +15060,32 @@ in with self; { takos = derive2 { name="takos"; version="0.1.0"; sha256="0a26jmxccpyk36sah9nz7pqpkc1rd9kbwrvwh0r0zp7lwvxbjb8w"; depends=[baseline broom colorRamps data_table devEMF MASS minpack_lm pracma segmented sfsmisc smoother]; }; tanaka = derive2 { name="tanaka"; version="0.1.3"; sha256="1x5czib9vqpxbr61if1rnlyrld6gx2zf22jz5rcagb8x3bxmd5g6"; depends=[isoband raster sf]; }; tangles = derive2 { name="tangles"; version="0.8.1"; sha256="06a5hn5hkvgr6pcjz3n0vi1zwmv00wypi5f62agqh8mas80v44vh"; depends=[digest raster sp]; }; + tangram = derive2 { name="tangram"; version="0.7.1"; sha256="0p0hrn3jv1l00nsjqa0j9yv4982r08fwgsj01pc06vmipg87kjiy"; depends=[base64enc digest htmltools knitr magrittr R6 stringi stringr]; }; tapkee = derive2 { name="tapkee"; version="1.1"; sha256="1s8710m4drhnycfv27bv1w7vqc99dvbcn8zxkahq0lrsx7q8i5mz"; depends=[]; }; + targeted = derive2 { name="targeted"; version="0.1.1"; sha256="09y4lhwfh7rzk343hc2pjr334x3978q6vyhsvpana0db8plas7aw"; depends=[futile_logger lava optimx Rcpp RcppArmadillo]; }; tashu = derive2 { name="tashu"; version="0.1.0"; sha256="04xvmbcwi84zg1pqw21nmrbnkyx184wc200vl1vhmwxggq1i60np"; depends=[dplyr drat ggplot2 lubridate plyr randomForest RColorBrewer reshape2]; }; tatest = derive2 { name="tatest"; version="1.0"; sha256="1yd9pdpdhxwpllnj5wxa7ly29qiw8qywx9lx0w3nizczlx35fgjy"; depends=[]; }; tatoo = derive2 { name="tatoo"; version="1.1.1"; sha256="0w9rm6cnc1mpfyklb8njzjwph2c38niinzxiflrqjqfdp7nd8281"; depends=[assertthat colt crayon data_table magrittr openxlsx stringi withr]; }; tau = derive2 { name="tau"; version="0.0-21"; sha256="08wfl0pv865clpcvzmzb3rw3hl76f16n3j61fbmrzi50xf2diyx7"; depends=[]; }; tauturri = derive2 { name="tauturri"; version="0.3.0"; sha256="014301f5mzy6vblqzb61bxjv46kdynmmrxjpxyvk01w1k8wkwfcn"; depends=[httr magrittr plyr purrr tibble]; }; - taxa = derive2 { name="taxa"; version="0.3.3"; sha256="11x28mxpza0cckj9cf4zizrsz87h48vlxxan8kn8lwzdpy1xn8j8"; depends=[crayon dplyr jsonlite knitr lazyeval magrittr R6 rlang stringr taxize tibble tidyr]; }; + taxa = derive2 { name="taxa"; version="0.3.4"; sha256="09mnszr8pdjxv680pbyp12wwvfb2iqpnqh3hmds05nisl8g5307x"; depends=[crayon dplyr jsonlite knitr lazyeval magrittr R6 rlang stringr taxize tibble tidyr]; }; taxadb = derive2 { name="taxadb"; version="0.1.0"; sha256="0nns9jpjawla90f12gi90562llb2j0pdhwlvy62mgcg0ghr39fgr"; depends=[arkdb curl DBI dbplyr dplyr jsonlite magrittr memoise progress rappdirs readr rlang RSQLite stringi tibble]; }; - taxize = derive2 { name="taxize"; version="0.9.94"; sha256="0ig8x3pkfawjk7x3hkrm4n94askhqk71sa5bbbp2l6dirqbfmism"; depends=[ape bold cli crayon crul data_table foreach jsonlite natserv phangorn R6 ritis rotl rredlist tibble wikitaxa worrms xml2 zoo]; }; - taxizedb = derive2 { name="taxizedb"; version="0.1.4"; sha256="15gj9i18ysd83v9fidrrvw938dah04i10ahi3wh5dgjs5fd5ch2s"; depends=[curl DBI dbplyr dplyr hoardr magrittr RMySQL RPostgreSQL RSQLite]; }; - taxlist = derive2 { name="taxlist"; version="0.1.7"; sha256="0a91hdw3n46p851662lx82znbw9hf9akg8mm4yslllwffrkhdn8g"; depends=[foreign stringdist taxa taxize vegdata]; }; + taxize = derive2 { name="taxize"; version="0.9.97"; sha256="0f1js5jr0zxi0zmdc9sd658yl1ddnznzcsy64prvjx0cprw26lkj"; depends=[ape bold cli conditionz crayon crul data_table foreach jsonlite natserv phangorn R6 ritis rotl rredlist tibble wikitaxa worrms xml2 zoo]; }; + taxizedb = derive2 { name="taxizedb"; version="0.2.0"; sha256="16cjmrjxswl2a29gq3ibjcf4zilwcymm93rvmvjjxkh9r0svgqaz"; depends=[curl DBI dbplyr dplyr hoardr magrittr readr rlang RSQLite tibble]; }; + taxlist = derive2 { name="taxlist"; version="0.1.9"; sha256="15h8c3x1hri7dzxrm04lajh97i0wz6xvvasz1byfy2iy8mcfwrnz"; depends=[foreign stringdist taxa taxize vegdata]; }; taxonomizr = derive2 { name="taxonomizr"; version="0.5.3"; sha256="0hxvcbyr5b3sxqy5kw1q17qx7c2q90a6x79r9bmjn6c2lnrqn83i"; depends=[data_table R_utils RSQLite]; }; taxotools = derive2 { name="taxotools"; version="0.0.43"; sha256="0msaqkvyhb292bsv84bw55xxmxhs5nyk31ikjz229q3xhv0zmnzw"; depends=[plyr sqldf taxize wikitaxa]; }; tbart = derive2 { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp]; }; tbd = derive2 { name="tbd"; version="0.1.0"; sha256="1wmfy3p82gckhfsslxzapryfygmircii7x24j6ysfyx52gy8iwf5"; depends=[numDeriv]; }; tbdiag = derive2 { name="tbdiag"; version="0.1"; sha256="1wr2whgdk84426hb2pf8iiyradh9c61gyazvcrnbkgx2injkz65q"; depends=[]; }; - tbl2xts = derive2 { name="tbl2xts"; version="0.1.3"; sha256="0yy0cpsflwx7fbql3vh0l87cvqgn0ghdqal4m7l9aplqhzdwxs3r"; depends=[dplyr lazyeval PerformanceAnalytics xts zoo]; }; + tbl2xts = derive2 { name="tbl2xts"; version="1.0.2"; sha256="0pqsrrv5qdwfrz3dd1b3idbk39gijwmm7k2xrakzdisswfxwggyd"; depends=[dplyr rlang tibble xts zoo]; }; tbm = derive2 { name="tbm"; version="0.3-2.1"; sha256="0srdcla6m5vlid27i793yynm3r2fg3nzr7zn6j923fcmnpdg2jcg"; depends=[basefun coneproj mboost mlt sandwich variables]; }; tbma = derive2 { name="tbma"; version="0.1.0"; sha256="066p3szfayyimwblghm1lipjf21xgscq1fzbzpqz16lqjpb99ni1"; depends=[data_table ranger RcppRoll zoo]; }; + tboot = derive2 { name="tboot"; version="0.2.0"; sha256="06yliy77vi3ql7pyzr5czqa5fpqx696lqszn911snx1i32hmq6rm"; depends=[kernlab quadprog]; }; tbrf = derive2 { name="tbrf"; version="0.1.5"; sha256="1mxfvgb18a62igdh3af4m8x6fl69s25j4x7isd70w744w6jvch3h"; depends=[boot dplyr lubridate purrr rlang tibble tidyr]; }; - tcR = derive2 { name="tcR"; version="2.2.4.1"; sha256="1m68wxbxwhiadav4mfcidsa1hgwy7k9x60gfbs4zn6az9ix827m6"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 scales stringdist]; }; - tcensReg = derive2 { name="tcensReg"; version="0.1.6"; sha256="052mlmkxxyqg2xm484srx2dx02bl69s6fqffwyn7758s34jwbcxl"; depends=[maxLik Rdpack]; }; + tcR = derive2 { name="tcR"; version="2.3.2"; sha256="0rsz6mbqjwin28p1pmal38v5jsgavbs0n362kng5zq8yg3l4z718"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 scales stringdist]; }; + tcensReg = derive2 { name="tcensReg"; version="0.1.7"; sha256="07wwn65c4q2ngafxhdd9vl0y1wambfy158mf38skxm295yidd05n"; depends=[maxLik Rdpack]; }; + tcftt = derive2 { name="tcftt"; version="0.1.0"; sha256="0p5ln0sl0fasdn49252g4lvwgwajgl7lh33a4r073ib54hxbj7bk"; depends=[]; }; tcgsaseq = derive2 { name="tcgsaseq"; version="1.8.1"; sha256="1v5b3qghygb81lqc2h1fijgw856b1778xndppq7r4b0zhhvb81ac"; depends=[CompQuadForm ggplot2 GSA KernSmooth statmod]; }; tcl = derive2 { name="tcl"; version="0.1.0"; sha256="1ssqx50ii6j2y5n2nxn5ndp20nrjss0xf0fqp8aiwlgnm3d1zggn"; depends=[eRm lattice MASS Matrix numDeriv]; }; tcltk2 = derive2 { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; @@ -14542,8 +15097,8 @@ in with self; { tdsc = derive2 { name="tdsc"; version="1.0.3"; sha256="1h46cflxj27i9bkl7iqxn7kzccl9b8r3fa9f5ska3a9p57algfyv"; depends=[data_table moments]; }; tdthap = derive2 { name="tdthap"; version="1.1-11"; sha256="15qlj2bivvz3pizd8dq34wczbkbxhzqh3cqp1ixkdkprlyvcxj5k"; depends=[]; }; tea = derive2 { name="tea"; version="1.1"; sha256="0ql7lrxk0ihm49kqsvz79ig8i54rwiy9nxav4v9hy72j9kj5bgjn"; depends=[Matrix]; }; - teachingApps = derive2 { name="teachingApps"; version="1.0.4"; sha256="0wi25wdpkz7kh8r1s42wa9kiky8ilmcg8kgw0j1caygwg0bml2fa"; depends=[actuar BH d3heatmap data_table devtools diagram DiagrammeR dplyr DT dygraphs ggplot2 knitr leaflet magrittr markdown metricsgraphics miniUI networkD3 pacman plotly radarchart Rcpp RcppEigen RcppNumerical rprojroot scales shiny shinyAce shinydashboard shinythemes threejs tidyr visNetwork yaml]; }; - tealeaves = derive2 { name="tealeaves"; version="1.0.0"; sha256="0hzih93h8c9gqvsmfaldq9jaw8hgvd4kmrlqlaqr6xhi6zhjqhf1"; depends=[crayon dplyr furrr future ggplot2 glue magrittr purrr rlang stringr tidyr units]; }; + teachingApps = derive2 { name="teachingApps"; version="1.0.8"; sha256="161l9nvgi22ihp3l87x4alk22m9451h45n7s3ic60y26sr3zlv3k"; depends=[actuar BH data_table devtools dplyr DT ggplot2 knitr magrittr markdown miniUI pacman Rcpp RcppEigen RcppNumerical rprojroot scales shiny shinydashboard shinythemes yaml]; }; + tealeaves = derive2 { name="tealeaves"; version="1.0.5"; sha256="1ln35w71qms5d0isk4l26pc7fd9lan6xfvk17h0xrgsnf95hbbj9"; depends=[checkmate crayon dplyr furrr future glue magrittr purrr rlang stringr units]; }; teamcolors = derive2 { name="teamcolors"; version="0.0.4"; sha256="0mqrjnkpxzv7armgbl9nwz42pjb9l94yml5lp41rhjj9414b2729"; depends=[dplyr ggplot2 tibble tidyr]; }; teamr = derive2 { name="teamr"; version="0.0.1"; sha256="01gngws8lf093598wlzrv4ls74avsli6ij33v1plqgc0znyaw4s2"; depends=[httr jsonlite R6]; }; teda = derive2 { name="teda"; version="0.1.1"; sha256="0yx469jbkw9cgx73zi5mkykrdn16kn01zh524x9411314aa32avx"; depends=[]; }; @@ -14562,21 +15117,22 @@ in with self; { tensorA = derive2 { name="tensorA"; version="0.36.1"; sha256="176hjy3bvg3in62r97wxbhq187sjz6c1gwy9x6spaxl6k4my3zy7"; depends=[]; }; tensorBF = derive2 { name="tensorBF"; version="1.0.2"; sha256="1dw1a6xqcsl4isbzbfiplgqq5nak5n9ffzm23mzzmkh1r1a8kl1y"; depends=[tensor]; }; tensorBSS = derive2 { name="tensorBSS"; version="0.3.6"; sha256="1ja4h5x1i4rqgq9k15zjy524ki2z2636fg0jcp352jzj87wl3443"; depends=[ggplot2 ICtest JADE Rcpp RcppArmadillo tensor tsBSS]; }; - tensorflow = derive2 { name="tensorflow"; version="2.0.0"; sha256="1cz0l6blr8wan47lslq4lx0aafk61gjxwm6b3nn8zwgx849nqyr4"; depends=[config jsonlite processx reticulate rstudioapi tfruns yaml]; }; + tensorflow = derive2 { name="tensorflow"; version="2.2.0"; sha256="0dz47npinbz198h1ps4wap7x9dvw2vrgiw867wj1h3xkjs2dfv5m"; depends=[config jsonlite processx reticulate rstudioapi tfruns yaml]; }; tensorordinal = derive2 { name="tensorordinal"; version="0.1.0"; sha256="0c54ppnxgmr7m9a3dr1a9i3z2vh5nnqp361lhaf081iib8shrxxv"; depends=[MASS pracma rTensor]; }; tensorr = derive2 { name="tensorr"; version="0.1.1"; sha256="18xdvp328h96jn8y1iayxh7cyz2s8j5nn43nq18pyaxq271hkfyh"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; }; tensorregress = derive2 { name="tensorregress"; version="2.0"; sha256="0whw57rj2jfh4wh30lv7n05ddymzsnxv6137f03s8aa9dh89fiqy"; depends=[MASS pracma speedglm]; }; tensorsparse = derive2 { name="tensorsparse"; version="2.0"; sha256="0midaw95q2gmk7hdlh6zdbm8nx0lm9m3y5liq6xrb3ajlq76ncqw"; depends=[fields glmnet HDCI mvtnorm RColorBrewer reshape rgl viridis]; }; tensr = derive2 { name="tensr"; version="1.0.1"; sha256="1z6b3ra7fgn88mxbhsq65x3frj5j7p17n119s9kbw7sg9y633vfx"; depends=[assertthat]; }; tergm = derive2 { name="tergm"; version="3.6.1"; sha256="03yd4l317airz84jfjyczjx43wi6sraid58lmxivm29xjk52xpi1"; depends=[coda ergm MASS network networkDynamic nlme robustbase statnet_common]; }; - tergmLite = derive2 { name="tergmLite"; version="2.1.7"; sha256="0djf7k0svdq4bnc84zxmxjns2fqggf0bs4h59jcl0yc36ka9k94n"; depends=[ergm network Rcpp statnet_common tergm]; }; - term = derive2 { name="term"; version="0.1.0"; sha256="16nphv6kysjjd523ypwdsw6f7l4zvqa6z62012lv71wdkhkfvgnr"; depends=[chk lifecycle]; }; + tergmLite = derive2 { name="tergmLite"; version="2.2.1"; sha256="1fi379vginmgry4yhzd43lzrkn6vh44hrfcgdzgyxrf16rj0v617"; depends=[ergm network Rcpp statnet_common tergm]; }; + term = derive2 { name="term"; version="0.2.0"; sha256="1a9208nzapa9av24hhpcl8mkxky8ynh0n7fvxg331r0pmw8h6aql"; depends=[chk extras lifecycle rlang universals vctrs]; }; ternvis = derive2 { name="ternvis"; version="1.2"; sha256="057i6i3ygxrin0npc18gsg3dpdldzafyb5sr6lix5mhy6b09lkxf"; depends=[dichromat maps quadprog]; }; - terra = derive2 { name="terra"; version="0.5-8"; sha256="0m2bfbjs4gz9mqzrris15b2p8mnb5skr96mpha7jkz3h9ybyzxm9"; depends=[raster Rcpp]; }; + terra = derive2 { name="terra"; version="0.8-6"; sha256="1ndh95ln0k82n7mnxw7nak9id23ia2vakxdw98ggkp460safi4a6"; depends=[raster Rcpp]; }; + terrainmeshr = derive2 { name="terrainmeshr"; version="0.1.0"; sha256="1xab6wzq2izzdvsss1rlgp5m3cn45naxhymq6cglipj0fd792jbr"; depends=[Rcpp]; }; tesseract = derive2 { name="tesseract"; version="4.1"; sha256="1a7cf48n7hdd6inqz23ifqhq6kx6wxri34a79ns2vxaj6f4llxf0"; depends=[curl digest pdftools rappdirs Rcpp]; }; test2norm = derive2 { name="test2norm"; version="0.1.1"; sha256="11by5a1j6613akxj1nc16r07jfwxr1izkpvymr9yycnddiqyp42c"; depends=[mfp]; }; testDriveR = derive2 { name="testDriveR"; version="0.5.1"; sha256="0wjdqvsyv33fsg1lljp9m0bhz38mpfgpgickgj4zdspc9x6lbnv6"; depends=[]; }; - testassay = derive2 { name="testassay"; version="0.1.0"; sha256="06gks3k04m45kn946i525261v33ymwxpvgdy84kc7sp01xxx4rfv"; depends=[]; }; + testassay = derive2 { name="testassay"; version="0.1.1"; sha256="1gc35s5an0cpvadwx4bswy5lzcp01az3gnkjhvph6sm3pi3xjxm7"; depends=[]; }; testcorr = derive2 { name="testcorr"; version="0.1.2"; sha256="0vwbmvhdmimwhn9gyki5khsvk2yw9ik9kjgxhbr4vy3mm3ly4zqb"; depends=[assertthat forcats ggplot2 knitr reshape2 scales]; }; testequavar = derive2 { name="testequavar"; version="0.1.2"; sha256="12qfy53rkrasxphcfmch5bmdlvlybd27jfg3azsi3fg4zk4qgdw2"; depends=[]; }; tester = derive2 { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; @@ -14587,15 +15143,15 @@ in with self; { testthis = derive2 { name="testthis"; version="1.1.1"; sha256="0csragn695698dpkr9d3md0g81bzpy5mybd0jik669q9cs8sdzh2"; depends=[assertthat devtools fs magrittr pkgload rprojroot stringi testthat usethis]; }; tetraclasse = derive2 { name="tetraclasse"; version="0.1.21"; sha256="1cl2cah0xi6x3rvvdy56iszai6rkbxc1w3x13v0l1z1nryff7c6a"; depends=[dplyr FactoMineR ggplot2 ggrepel magrittr reshape2 tibble tidyr]; }; texPreview = derive2 { name="texPreview"; version="1.4.4"; sha256="1a80ld5j7419nqxvg1nq0kiv7ls262n6bk6pkj3cyqjq6z2y01j0"; depends=[base64enc details fs htmltools knitr lifecycle magick magrittr rematch2 rstudioapi svgPanZoom whisker xml2]; }; - texmex = derive2 { name="texmex"; version="2.4.5"; sha256="13wsrp418cgvma7a7hfhbs6ywp3j1j2sig7x60zh8v29pjcxic2n"; depends=[ggplot2 mvtnorm Rcpp]; }; - texreg = derive2 { name="texreg"; version="1.36.23"; sha256="0yxaqimd7cyfrfpia6fnqm15lgs0bf5zyjzmnfm1v4qmf8kj8x6v"; depends=[]; }; + texmex = derive2 { name="texmex"; version="2.4.7"; sha256="1lx916lan9cd3gb6sahx5vyppflb08zslh1877c2d39q16dwshg7"; depends=[ggplot2 mvtnorm Rcpp]; }; + texreg = derive2 { name="texreg"; version="1.37.5"; sha256="0cb3kvxfi9k9g958fkb73cgqdxx3h9bz2cnaakic4wgrkv27mk2c"; depends=[httr]; }; text_alignment = derive2 { name="text.alignment"; version="0.1.1"; sha256="0gf4rpk6l77v9fl7pbmyzq1jmb9kmzzdrpr8bsq05n9vv5lhaqqf"; depends=[Rcpp]; }; - text2speech = derive2 { name="text2speech"; version="0.2.10"; sha256="08sg17avqdb7wl68hc6caljwsv4wziw7w0csc8ga4k7bh7r53h8l"; depends=[aws_signature dplyr googleAuthR googleLanguageR httr knitr magrittr mscstts tuneR]; }; + text2speech = derive2 { name="text2speech"; version="0.2.13"; sha256="0c0h4yfp1gzaf4snav84iy5m0fx8az0pw1h2s33239dxkwcff893"; depends=[aws_signature dplyr googleAuthR googleLanguageR httr knitr magrittr mscstts tuneR]; }; text2vec = derive2 { name="text2vec"; version="0.6"; sha256="0r75cv77x2zm1z66s95hic71dpbqmybz39n48q6mz7gfd3m7312y"; depends=[data_table digest lgr Matrix mlapi R6 Rcpp rsparse stringi]; }; textTinyR = derive2 { name="textTinyR"; version="1.1.3"; sha256="0z9k978yk54zxrrjajcb0nanfhfpxm2bq2vbmk6w5s194da6y3xl"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; textcat = derive2 { name="textcat"; version="1.0-6"; sha256="0639b1qbi8779lskk5ms0sbbnmy2s73b3w96abbr70mrh0s2f9rw"; depends=[slam tau]; }; textclean = derive2 { name="textclean"; version="0.9.3"; sha256="0kgjh6c4f14qkjc4fds7q7rpf4nkma3p0igm54fplmm3p853nvrz"; depends=[data_table english glue lexicon mgsub qdapRegex stringi textshape]; }; - textdata = derive2 { name="textdata"; version="0.4.0"; sha256="0admyznyy02rxn3r0n1icyslfv4qky2b7mwzmc0g0251awnnx55a"; depends=[fs rappdirs readr tibble]; }; + textdata = derive2 { name="textdata"; version="0.4.1"; sha256="096gafbbh48yz4zbakv91cfd75kv8dg4p361s50rfqqjz57192fx"; depends=[fs rappdirs readr tibble]; }; texteffect = derive2 { name="texteffect"; version="0.3"; sha256="1qcbr18h3vakh6ymw4axzqcqrpss6z68a592xl879b82l2nlq8a7"; depends=[boot ggplot2 MASS]; }; textfeatures = derive2 { name="textfeatures"; version="0.3.3"; sha256="0x67kms7ipsadymc9jwja7wymav8y9kc5sbmp2vw4n4l89n32raa"; depends=[dplyr purrr rlang text2vec tfse tibble tokenizers]; }; textgRid = derive2 { name="textgRid"; version="1.0.1"; sha256="1wi5vq5f7ixhz39l5hqi2jlmjjacx4lyrs4h8xfbd47pj6g16lc6"; depends=[]; }; @@ -14603,44 +15159,46 @@ in with self; { textir = derive2 { name="textir"; version="2.0-5"; sha256="0ban5qiinlxizqpcgafv4b5gwxlil6jdfarjd6l1m48awxh3mlnb"; depends=[distrom gamlr Matrix]; }; textmineR = derive2 { name="textmineR"; version="3.0.4"; sha256="1388blqxziqzjipys6icdifnnzgxvm0w3yr9jihl32ldd701rvvw"; depends=[gtools magrittr Matrix Rcpp RcppArmadillo RcppProgress RSpectra stopwords stringr text2vec]; }; textometry = derive2 { name="textometry"; version="0.1.4"; sha256="17k3v9r5d5yqgp25bz69pj6sw2j55dxdchq63wljxqkhcwxyy9lh"; depends=[]; }; + textplot = derive2 { name="textplot"; version="0.1.3"; sha256="1nvc92b688pdm4fvvl56pd9liiql68nrsl136jj60q3yi9kpl21d"; depends=[data_table lattice Matrix]; }; textrank = derive2 { name="textrank"; version="0.3.0"; sha256="1sjzllz3ixxr043hbmbvwkwvj5wzh3m08x9z7h6hvy8ld8nzmn74"; depends=[data_table digest igraph]; }; - textreadr = derive2 { name="textreadr"; version="0.9.0"; sha256="04nyjrfxgwq8g3bdj12nnkia2xn2zngk1rprlkpyicrisgq36agk"; depends=[antiword curl data_table pdftools readxl rvest striprtf textshape xml2]; }; - textrecipes = derive2 { name="textrecipes"; version="0.2.0"; sha256="1wibykc1ix2l6wimczqi30z63cidvpq2b5hfj6irf2myhbz5cyv2"; depends=[dials dplyr generics magrittr Matrix modeldata purrr Rcpp recipes rlang SnowballC stopwords stringr tibble tidyr tokenizers vctrs]; }; + textreadr = derive2 { name="textreadr"; version="1.0.2"; sha256="0rcdgcgdn1lnnpjkvcsyfwcbpdlhcx35sbr8zlyapgmfglbnpjg3"; depends=[antiword curl data_table pdftools readxl rvest striprtf textshape xml2]; }; + textrecipes = derive2 { name="textrecipes"; version="0.3.0"; sha256="0acgrh8smf2fcj43cj5x3qy493wwhn10cfsssrba3grcg62kir2x"; depends=[dplyr generics magrittr Matrix purrr Rcpp recipes rlang SnowballC stringr tibble tidyr tokenizers vctrs]; }; textreg = derive2 { name="textreg"; version="0.1.5"; sha256="0h44z5hyndnvzd9axix7gpmhbdx347dfgxw9r8w38kyw6dklbjy6"; depends=[NLP Rcpp tm]; }; - textreuse = derive2 { name="textreuse"; version="0.1.4"; sha256="0qfp7ffzb5p3k3wiw8i1zjskni8f38rzkjnss97j9f3vhhb8j4r7"; depends=[assertthat BH digest dplyr NLP Rcpp RcppProgress stringr tidyr]; }; + textreuse = derive2 { name="textreuse"; version="0.1.5"; sha256="1mva0f6pk0kpfw0vf90qw3a25f1i3imdhk2s7hxyzans0z2237jd"; depends=[assertthat BH digest dplyr NLP Rcpp RcppProgress stringr tibble tidyr]; }; textshape = derive2 { name="textshape"; version="1.7.1"; sha256="02111kj3kka84mpx7s19bjna9cas8diw5fxz51v5ggz0ldswa5pa"; depends=[data_table slam stringi]; }; textstem = derive2 { name="textstem"; version="0.1.4"; sha256="1pbhi5ia3w16vsix2x3if51zd2v9bcv0j4lj9hfikgq1yz9zxmw2"; depends=[dplyr hunspell koRpus koRpus_lang_en lexicon quanteda SnowballC stringi textclean textshape]; }; textutils = derive2 { name="textutils"; version="0.2-0"; sha256="06w0d12l7g4z3m278x5ap0jxm2y1h6ssj4igfcxk7j8k5hy89l80"; depends=[]; }; tfCox = derive2 { name="tfCox"; version="0.1.0"; sha256="06mbiz1jwp8mv5dbwyvdvy1wpp8s3xp9hhsm94vrbvjaxg680g28"; depends=[Rcpp survival]; }; + tfaddons = derive2 { name="tfaddons"; version="0.10.0"; sha256="16adig97qmafval6i29pqdinsgbwjz2isajxdx1xvbf1mrawkmz0"; depends=[keras purrr reticulate rstudioapi tensorflow]; }; tfautograph = derive2 { name="tfautograph"; version="0.2.0"; sha256="1jpimmlsihr78v56v9mp51grmvwa198a1inahihk3yj02wzfqizj"; depends=[reticulate tensorflow]; }; - tfdatasets = derive2 { name="tfdatasets"; version="2.0.0"; sha256="1fw2qa7hh6z2gxib2ym4cqv4kp8y918mgi3yb4vgjd2pi0dbvksr"; depends=[generics magrittr reticulate rlang tensorflow tfestimators tidyselect]; }; + tfdatasets = derive2 { name="tfdatasets"; version="2.2.0"; sha256="0d85fdji2ip0h76vhax9z910vib2nilmpjk9y9525f4hc0bm7kss"; depends=[generics magrittr reticulate rlang tensorflow tfestimators tidyselect]; }; tfdeploy = derive2 { name="tfdeploy"; version="0.6.1"; sha256="1vbxyvmzaafbwp1pmvzn16zyl4nz85787m79gn7iazh9zw9f7j34"; depends=[httpuv httr jsonlite magrittr reticulate swagger tensorflow]; }; - tfer = derive2 { name="tfer"; version="1.1"; sha256="19d31hkxs6dc4hvj5495a3kmydm29mhp9b2wp65mmig5c82cl9ck"; depends=[]; }; + tfer = derive2 { name="tfer"; version="1.3"; sha256="1a5i9jccj39n61ixx8q2qq9ismr43jybp0vlvy6jda99r92zdhhl"; depends=[]; }; tfestimators = derive2 { name="tfestimators"; version="1.9.1"; sha256="0da34iy7fyfzhbvaj8494sl6nrmhcfbqcr71l95ziaxgb8285ndm"; depends=[forge magrittr progress purrr reticulate rlang tensorflow tfruns tibble tidyr tidyselect]; }; - tfhub = derive2 { name="tfhub"; version="0.7.0"; sha256="1a4iasasfbd44hljxkf2a76j1nb6l6jmijw8f52h5m00m8arfh2i"; depends=[magrittr reticulate rstudioapi tensorflow]; }; + tfhub = derive2 { name="tfhub"; version="0.8.0"; sha256="155kk42lzm19kjnlfvagqv5ckg2s0667d5r2ca5cabzaksil8223"; depends=[magrittr reticulate rstudioapi tensorflow]; }; tfio = derive2 { name="tfio"; version="0.4.1"; sha256="089vh0k12z0ymk4v585hfnl5yqp28rgzqgy633m874h6fqzhhxvp"; depends=[forge magrittr reticulate tensorflow tfdatasets]; }; tfplot = derive2 { name="tfplot"; version="2015.12-1"; sha256="1x007j6ibbzfr0kncvsr4c7295jv3c4amg2dpyjvdir9h665nc23"; depends=[tframe]; }; - tfprobability = derive2 { name="tfprobability"; version="0.9.0.0"; sha256="1idvz3ph0fjaa1bd4zgwsvqhdf604sl76r4g4askmww42hycvpqp"; depends=[keras magrittr reticulate tensorflow]; }; + tfprobability = derive2 { name="tfprobability"; version="0.11.0.0"; sha256="0mchj8gydgifvm5i4xzcjrhqqby9hhlksczz33njzrpyk807pndz"; depends=[keras magrittr reticulate tensorflow]; }; tframe = derive2 { name="tframe"; version="2015.12-1.1"; sha256="1yff22jzh1mp73zbz2mav6z8m42lylfjhb8dgxj4337fv3if3i13"; depends=[]; }; tframePlus = derive2 { name="tframePlus"; version="2016.7-1"; sha256="12xi2xw4pr78n3cppfknpxmjp2263pb4kqj9v412yxwp82rgb6yk"; depends=[tframe timeSeries]; }; tfruns = derive2 { name="tfruns"; version="1.4"; sha256="1mqv5m13qm1dqz0622jd5ayb3nk76lfa657y2hyqv261flxizhvg"; depends=[base64enc config jsonlite magrittr reticulate rlang rstudioapi tidyselect whisker yaml]; }; tfse = derive2 { name="tfse"; version="0.5.0"; sha256="05q75xsiy955xwgchagk7l7725y6mylp5lj5284xm7y2xh197zp3"; depends=[dapr magrittr]; }; - tgcd = derive2 { name="tgcd"; version="2.3"; sha256="1wl5lp1kbibdppfpjr41m1mzh72s22v5hcrjiwhc5sp59mynl4s3"; depends=[]; }; + tgcd = derive2 { name="tgcd"; version="2.5"; sha256="1zsmard9vai0m4gz5mf5b9qqv6i7h5xhv1mbs2sc0kcznk28jirn"; depends=[]; }; tggd = derive2 { name="tggd"; version="0.1.1"; sha256="1izar1b3w148vp2r8gv3vpwfndib8ilxcjxgbfzbxn7q5mr73mwa"; depends=[gsl]; }; tgp = derive2 { name="tgp"; version="2.4-14"; sha256="1l3kssjkh5sbrh75qdpmynjfnidgz8vmzq1jml1qm1yfwval8ak1"; depends=[maptree]; }; tgram = derive2 { name="tgram"; version="0.2-3"; sha256="0vlnry8drq3fqfy8dk50pcwcx9dj657kx6s19fs2b6acigkr4g7w"; depends=[zoo]; }; thankr = derive2 { name="thankr"; version="1.0.0"; sha256="089ikp85d5ia6a1qzmw8dkgcmz628cibmwfzcpk7m3ii8acxq91w"; depends=[]; }; thectar = derive2 { name="thectar"; version="1.0.0"; sha256="1qh0qzg0ybb38kzm56xxlvhm201pdjm16aky5f1fdflcsszgy8mx"; depends=[proxy smacof]; }; theiaR = derive2 { name="theiaR"; version="0.3.0"; sha256="0z3i6dgf2mv954llb6vk6g09gdk1hi0fjygk09jp8p9cygn7r941"; depends=[askpass httr R6 raster XML]; }; - themetagenomics = derive2 { name="themetagenomics"; version="1.0.1"; sha256="09hr351s5qqmiyv77fbf71yp2jx7b00s1j2afss3rbrvmcznkdma"; depends=[ggplot2 lda lme4 Matrix plotly Rcpp rstan scales shiny stm]; }; - themis = derive2 { name="themis"; version="0.1.0"; sha256="1hsrm8z9fh8smzw9yda8j32zq9warnpy6rihyni0zwchgp3iyawq"; depends=[dials dplyr generics purrr RANN recipes rlang ROSE tibble tidyselect unbalanced withr]; }; + themetagenomics = derive2 { name="themetagenomics"; version="1.0.2"; sha256="14i81cd9cyzhi3j2d9ygwlairkimhx8ffvva3pg3xwwvpywb6mla"; depends=[ggplot2 lda lme4 Matrix plotly Rcpp rstan scales shiny stm]; }; + themis = derive2 { name="themis"; version="0.1.2"; sha256="00yl9dbngbzpsqds28ffxyvaw25yvbdrrdsylrzxhjmj7fd2p49i"; depends=[dplyr generics purrr RANN recipes rlang ROSE tibble unbalanced withr]; }; thermocouple = derive2 { name="thermocouple"; version="1.0.2"; sha256="1rlvhw3i83iq1vibli84gj67d98whvgkxafwpmisva1m4s1bmij4"; depends=[]; }; thgenetics = derive2 { name="thgenetics"; version="0.4-2"; sha256="1314gry3xs9v4jy13g08q16qy4ax3s0bc7d74gi0wbpkgdrk3lql"; depends=[]; }; thickmatch = derive2 { name="thickmatch"; version="0.3.1"; sha256="0q7wpilbk8jm3q7m5hb114jpbv4ri1745v9sbdf222l6ymds6pia"; depends=[DiPs MASS plyr rcbalance]; }; thief = derive2 { name="thief"; version="0.3"; sha256="12ymkkisg5p0g1gmvlczhp4dc7mirjg55fqqmz2d90673vlg6rfq"; depends=[forecast ggplot2 hts]; }; - thinkr = derive2 { name="thinkr"; version="0.13"; sha256="1j43mjznriq8d5ki50rb41vgmzj2gq8sahvhj11742ggxd0bzvdb"; depends=[assertthat devtools dplyr ggplot2 lazyeval lubridate magrittr officer rvg stringi stringr tidyr]; }; - thor = derive2 { name="thor"; version="1.1.1"; sha256="1hkv7xd633qqcgfm16ws6hn26ab0mv5gqs6n8g7cq1qv57dsqjmm"; depends=[R6 storr]; }; - threeBrain = derive2 { name="threeBrain"; version="0.1.5"; sha256="1ms7j1xaxlyw87f53p5gmmkabm9plh7qk0jpp6qav8yy5z93xggm"; depends=[base64enc crayon digest dipsaus freesurferformats gifti htmltools htmlwidgets jsonlite oro_nifti R6 reticulate shiny startup stringr]; }; + thinkr = derive2 { name="thinkr"; version="0.15"; sha256="17mfw067advk8vxlz8x0w0vww3718zp2fcs00sca8ivlh8yh9fcg"; depends=[assertthat crayon devtools dplyr ggplot2 lazyeval lubridate magrittr officer purrr readr rvg stringi stringr tidyr]; }; + thor = derive2 { name="thor"; version="1.1.2"; sha256="0r4kgzbydjb7z0j808g5zdkx5wmbqncqg453bqm4ylafpj5z79kv"; depends=[R6 storr]; }; + threeBrain = derive2 { name="threeBrain"; version="0.1.8"; sha256="0finv8hk2nj1d0h7hb51vpfjnrr7xyxnilnj8hsxl60nbf1a9byg"; depends=[base64enc crayon digest dipsaus freesurferformats gifti htmltools htmlwidgets jsonlite oro_nifti R6 shiny stringr]; }; threeboost = derive2 { name="threeboost"; version="1.1"; sha256="033vwn42ys81w6z90w5ii41xfihjilk61vdnsgap269l9l0c8gmn"; depends=[Matrix]; }; threejs = derive2 { name="threejs"; version="0.3.3"; sha256="1711h351nzxfkbbdwvfzyhciyvi9c6wx3jq1g97lzcqgnb45kivn"; depends=[base64enc crosstalk htmlwidgets igraph]; }; threewords = derive2 { name="threewords"; version="0.1.0"; sha256="083y5i4qyl1wj017wy5ywl2yx9wvrpjl9g9k9clvnrbwzbycx2cg"; depends=[httr]; }; @@ -14649,101 +15207,106 @@ in with self; { threshr = derive2 { name="threshr"; version="1.0.1"; sha256="1v9aba5w1lrjy2ngx9kc2ih8sd4dhq45j8y6vn4mbs3y8f5dvhr0"; depends=[revdbayes rust]; }; thriftr = derive2 { name="thriftr"; version="1.1.5"; sha256="1s8fn0imja6gh5bb0h2g1pmvkwk5v0dmpml9yvcd5dhz9lxy6vdj"; depends=[R6 rly stringi]; }; thsls = derive2 { name="thsls"; version="0.1"; sha256="18z7apskydkg7iqrs2hgnzby578qsvyd73wx8v4z3aa338lssdi7"; depends=[Formula]; }; - thurstonianIRT = derive2 { name="thurstonianIRT"; version="0.9.0"; sha256="0jjrdx5f581h8vh0fw4p85mlqfym467azp7cln48wzi1s28m9mn2"; depends=[BH dplyr lavaan magrittr MplusAutomation mvtnorm Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidyr]; }; - tibble = derive2 { name="tibble"; version="3.0.1"; sha256="17m7xvn423snq9dmr0bhx42j5rbc53w1viizxx4bvq37nz7m4i8m"; depends=[cli crayon ellipsis fansi lifecycle magrittr pillar pkgconfig rlang vctrs]; }; - tibbletime = derive2 { name="tibbletime"; version="0.1.3"; sha256="0p42g73cmw460v372317as50ijvsg49avg9cf222ypf1v0ls3ig1"; depends=[assertthat dplyr glue hms lifecycle lubridate purrr Rcpp rlang tibble tidyselect vctrs zoo]; }; + thurstonianIRT = derive2 { name="thurstonianIRT"; version="0.11.1"; sha256="18xasg21w4sd32nhhs138fk70z9kpyv1l3jsrzzav2zwfb7246fk"; depends=[BH dplyr knitr lavaan magrittr MplusAutomation mvtnorm Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidyr]; }; + tibble = derive2 { name="tibble"; version="3.0.3"; sha256="0f4yi87w6509lnaz1lhk9s8nm3bzx21ij3273s0zx7vpbp0qlxxz"; depends=[cli crayon ellipsis fansi lifecycle magrittr pillar pkgconfig rlang vctrs]; }; + tibbletime = derive2 { name="tibbletime"; version="0.1.6"; sha256="0pfph4pyjxkxrir5ca1sh7xz07dylqnq40w0qyqiyaj5s23mbbmb"; depends=[assertthat dplyr glue hms lifecycle lubridate purrr Rcpp rlang tibble tidyselect vctrs zoo]; }; tibbrConnector = derive2 { name="tibbrConnector"; version="1.5.1"; sha256="1r58myi7x4hqqvyrphxy4ppa1lnad6x2ginfq2j52ax53zr07ajp"; depends=[RCurl rjson]; }; tictactoe = derive2 { name="tictactoe"; version="0.2.2"; sha256="1fx8plj5zr04xwk5hfj3zqhcknidxlzya2q14cf0m3y33a86lx42"; depends=[hash]; }; tictoc = derive2 { name="tictoc"; version="1.0"; sha256="1zp2n8k2ax2jjw89dsri268asmm5ry3ijf32wbca5ji231y0knj7"; depends=[]; }; - tidyBF = derive2 { name="tidyBF"; version="0.2.0"; sha256="0pl5h7zqs7gap4pzch0f7m58lgwdvgp0zlp6l328j3z9h46amh9y"; depends=[BayesFactor dplyr ipmisc metaBMA rlang tidyr]; }; - tidyHeatmap = derive2 { name="tidyHeatmap"; version="0.99.9"; sha256="04vx1ck1s6v4fzxxd4cpm5z3f0dzx3b9262xabnq75swng90w03r"; depends=[circlize ComplexHeatmap dplyr magrittr purrr RColorBrewer rlang tidyr viridis]; }; - tidyLPA = derive2 { name="tidyLPA"; version="1.0.6"; sha256="1c3v7zljs6isbxzmyqx065pb31hl15sma00wh7pv3wgzacibbgmx"; depends=[dplyr ggplot2 gtable mclust mix MplusAutomation tibble]; }; + tidyBF = derive2 { name="tidyBF"; version="0.2.1"; sha256="1dp8v2dlskvr73c033h0ckrpfj7gav6l4rak29rmmzfn8pc1l5rj"; depends=[BayesFactor dplyr ipmisc metaBMA rlang tidyr]; }; + tidyHeatmap = derive2 { name="tidyHeatmap"; version="1.1.4"; sha256="16s3swxwf3yxqk1f6jzzdfbb03i0d7b83gnsrbyrni3c68pg2h5k"; depends=[circlize ComplexHeatmap dplyr lifecycle magrittr purrr RColorBrewer rlang tidyr viridis]; }; + tidyLPA = derive2 { name="tidyLPA"; version="1.0.8"; sha256="0jrvd92q20kzz83lid9vvdh0l3l1kbc4m77cim261gzra1p7w5y0"; depends=[dplyr ggplot2 gtable mclust mix MplusAutomation tibble]; }; tidyMicro = derive2 { name="tidyMicro"; version="1.43"; sha256="1y399khg85979lh9s528y5qab711qybd1vfw5kvyy7253ikmcb3p"; depends=[ade4 broom car cowplot dplyr Evomorph factoextra ggplot2 ggrepel gridExtra latex2exp lme4 lsr magrittr MASS Matrix plotly plyr png purrr rlang scales scatterplot3d shapes stringr ThreeWay tibble tidyr tidyverse vegan VGAM]; }; tidyREDCap = derive2 { name="tidyREDCap"; version="0.2.0"; sha256="03kx91avw6zbmrcxvhkb7i3syw3ajkv9ypvgn2iq3ki887vbiwzw"; depends=[dplyr janitor magrittr purrr rlang stringr tibble tidyr]; }; - tidyRSS = derive2 { name="tidyRSS"; version="2.0.1"; sha256="06pqhvgiibf1s72abd0rq3fv55plkd4481b3jhvxm3cd2isa3gbw"; depends=[anytime dplyr httr jsonlite magrittr purrr rlang tibble xml2]; }; - tidyUSDA = derive2 { name="tidyUSDA"; version="0.2.7"; sha256="1qyy0908ll4xr7496wsxg2vqhrlqrs1wh3nypw96djldk61bdziq"; depends=[crayon curl dplyr fuzzyjoin ggplot2 jsonlite keyring magrittr nlme rgdal sf stringi tigris usethis]; }; - tidybayes = derive2 { name="tidybayes"; version="2.0.3"; sha256="0grg53m0b0nhpadl5c7qcshqinzwx5whinvdgycpl9g7582512hr"; depends=[arrayhelpers coda dplyr forcats ggplot2 HDInterval magrittr plyr purrr rlang scales tibble tidyr tidyselect]; }; + tidyRSS = derive2 { name="tidyRSS"; version="2.0.2"; sha256="1w2nb1vngsgjv486w886r890zb85nhsjm9qy398kj5qyvh8gfr42"; depends=[anytime dplyr glue httr jsonlite magrittr purrr rlang tibble vctrs xml2]; }; + tidySEM = derive2 { name="tidySEM"; version="0.1.2"; sha256="1f66lc65905v88bdg95mwq5qp6367j0xik1rbfdw1s321cr6yvj1"; depends=[ggplot2 igraph lavaan MplusAutomation psych]; }; + tidyUSDA = derive2 { name="tidyUSDA"; version="0.2.9"; sha256="01h3bm7vfx8df7c6b83fd94f7i7d2i7w986sjfj78bl8pxs0k6gf"; depends=[crayon curl dplyr fuzzyjoin ggplot2 jsonlite keyring magrittr nlme rgdal sf stringi tigris usethis]; }; + tidybayes = derive2 { name="tidybayes"; version="2.1.1"; sha256="0wz7hf7a2c2x67rnlil4sqxzmiwy2rw2jma2hpwg025mnpasny3i"; depends=[arrayhelpers coda dplyr forcats ggdist ggplot2 HDInterval magrittr plyr purrr rlang scales tibble tidyr tidyselect]; }; tidyboot = derive2 { name="tidyboot"; version="0.1.1"; sha256="0nss1ci763g9p5f33g163ppamx72axc8xhrils0cql3ka8439pmn"; depends=[dplyr modelr purrr rlang tidyr]; }; - tidycells = derive2 { name="tidycells"; version="0.2.2"; sha256="1h1g2kw4q0qgakj716gzd8jcn0hgsy5l1cypk35s6arz73xrxf0r"; depends=[dplyr ggplot2 magrittr purrr rlang stringr tibble tidyr unpivotr]; }; - tidycensus = derive2 { name="tidycensus"; version="0.9.9.2"; sha256="1m9i19b3z8nzbcly9a8nk75msy6d8bkchvyv6izdiy1mlqxrc6fh"; depends=[dplyr httr jsonlite purrr rappdirs readr rvest sf stringr tidyr tigris units xml2]; }; + tidycat = derive2 { name="tidycat"; version="0.1.1"; sha256="04binzg0wijs173y8fr856935vdl80pid5d0zknb34fdaqa07kfh"; depends=[dplyr forcats magrittr stringr tibble tidyr]; }; + tidycensus = derive2 { name="tidycensus"; version="0.9.9.5"; sha256="1dv57daiy9139dicj738am58k2dg66x0vphkfz1vfryqc57l1px6"; depends=[dplyr httr jsonlite purrr rappdirs readr rvest sf stringr tidyr tigris units xml2]; }; tidycode = derive2 { name="tidycode"; version="0.1.1"; sha256="0ahjhn1ar93xnd1snxnivdl43d1b6ica0pc30rgh8jpha87zbsay"; depends=[glue matahari pryr purrr rlang tibble]; }; tidycomm = derive2 { name="tidycomm"; version="0.1.0"; sha256="0xas6nr7fy612r0b5h8ncvirxhzy099zvhdzxbnskm3sa21046ni"; depends=[broom dplyr forcats glue magrittr MBESS purrr rlang stringr tibble tidyr]; }; tidycwl = derive2 { name="tidycwl"; version="1.0.4"; sha256="1f3lrdl73lx0a0y6kz33i6s8nkcwdjdmc6mvnkqp3n8r851q46lg"; depends=[dplyr htmlwidgets jsonlite magrittr visNetwork webshot yaml]; }; tidydice = derive2 { name="tidydice"; version="0.0.6"; sha256="1g0x426gri1s0fyn2srl7ni0zvrnx1wvg5zcr19fxgdw9m8rxxp2"; depends=[assertthat dplyr ggplot2 magrittr purrr tibble]; }; tidyfast = derive2 { name="tidyfast"; version="0.2.1"; sha256="1bfs2wma705nx1lpndq75ama5dr9kkg8hwpklb20csnccnfrlvf6"; depends=[data_table Rcpp]; }; - tidyfst = derive2 { name="tidyfst"; version="0.9.5"; sha256="0dl7s04s1vgssvay05sjlp4z2ccivzjspqd7wvv50ncv5zrnlw8s"; depends=[data_table fst stringr]; }; + tidyfst = derive2 { name="tidyfst"; version="0.9.8"; sha256="1j5lwvd14jkg3dk4kajiq1sacdddmgj390q8118sh5gim8h2s5dq"; depends=[data_table fst stringr]; }; tidyft = derive2 { name="tidyft"; version="0.4.5"; sha256="0l6ixaqj356q319ms0bf655f530cgiia9saqdx9lryaf0b6i2hxb"; depends=[data_table fst stringr]; }; tidygapminder = derive2 { name="tidygapminder"; version="0.1.1"; sha256="1m6bynwnw1msrzvdmy12w3ympinqpd8j3may3rwmg9941nndjv2d"; depends=[data_table dplyr readxl tidyr]; }; + tidygate = derive2 { name="tidygate"; version="0.2.7"; sha256="1djslp2080sc2fagmgw4z0qaxz46n0a9rc22h4xrfc2660369dj1"; depends=[dplyr gatepoints lifecycle lme4 magrittr purrr RColorBrewer rlang scales stringr tibble tidyr tidyselect viridis]; }; tidygenomics = derive2 { name="tidygenomics"; version="0.1.2"; sha256="1cnwmmmzp9kg4k7iy2kgb22bdllpnz257pv1ahy3l11zy6bl48fc"; depends=[dplyr fuzzyjoin IRanges purrr Rcpp rlang tidyr]; }; - tidygeocoder = derive2 { name="tidygeocoder"; version="0.2.5"; sha256="03zrl7zvwpcir44a5f2mixyd35rcyx8fpq7fjybb5z0bky068ir4"; depends=[dplyr httr jsonlite purrr rlang stringr tibble tidyr tmaptools]; }; - tidygraph = derive2 { name="tidygraph"; version="1.1.2"; sha256="1zpsarm74afbc7p5dlyb0whc09670qdcddw1ckb25cfc9hfh0hjn"; depends=[dplyr igraph magrittr pillar R6 Rcpp rlang tibble tidyr]; }; + tidygeoRSS = derive2 { name="tidygeoRSS"; version="0.0.1"; sha256="0bppkwbxmm8ps1cnrhzxkzm2pbi3s5bfiwx8fcrp31x81jl61w1x"; depends=[anytime dplyr httr jsonlite magrittr purrr rlang sf strex stringr tidyRSS xml2]; }; + tidygeocoder = derive2 { name="tidygeocoder"; version="1.0.1"; sha256="1djf7j3nzq6z2nnxxg9r495bx8sa7a1hd8bgkd7fw5pad8f83b7d"; depends=[dplyr httr jsonlite tibble]; }; + tidygraph = derive2 { name="tidygraph"; version="1.2.0"; sha256="17qjns33zcj82jcsl7bn7i4zxcm7ric50zyf7agi0i01zi16qz85"; depends=[dplyr igraph magrittr pillar R6 Rcpp rlang tibble tidyr]; }; tidyhydat = derive2 { name="tidyhydat"; version="0.5.0"; sha256="0bf8rnk0yhdjjs79d4s833z9j165cwvg3xdmqg3kc5yzc31m4hsg"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; }; - tidyjson = derive2 { name="tidyjson"; version="0.2.4"; sha256="1nbg7wg8r38ydvcp3kbxmmnayxrdkl3p7x0fjxny3bj9a0fp99y7"; depends=[assertthat dplyr jsonlite magrittr purrr tibble tidyr]; }; - tidylog = derive2 { name="tidylog"; version="1.0.1"; sha256="1plhzspwbc1p8hh1a3nkil63mfp740zvlsrfpdq5db3ja2jqz680"; depends=[clisymbols dplyr glue tidyr]; }; - tidymodels = derive2 { name="tidymodels"; version="0.1.0"; sha256="1bi5vh80f6f2ibhyaapgnl7q1mkkx8425vj6ci0ml5rb7l8jhjm8"; depends=[broom cli crayon dials dplyr ggplot2 infer magrittr parsnip pillar purrr recipes rlang rsample rstudioapi tibble tidyposterior tidypredict tidytext tune workflows yardstick]; }; - tidymv = derive2 { name="tidymv"; version="2.2.0"; sha256="0g550b0frgk4wy3sicsqqinffrlbqzghhcnvh3snci6xd7j37hmm"; depends=[dplyr ggplot2 itsadug magrittr mgcv rlang tibble tidyr]; }; - tidync = derive2 { name="tidync"; version="0.2.3"; sha256="1wjw3fmyj8f95f94zai58h8b6h0vqqlrw4c629jjgg8ayy7aay9p"; depends=[dplyr forcats magrittr ncdf4 ncmeta purrr rlang RNetCDF tibble tidyr]; }; + tidyjson = derive2 { name="tidyjson"; version="0.3.1"; sha256="1rx5ncp20j9mhcziyqb0vgfq9061qylgvfwz27dsyz58r8fygwnq"; depends=[assertthat dplyr jsonlite magrittr purrr rlang tibble tidyr]; }; + tidylo = derive2 { name="tidylo"; version="0.1.0"; sha256="135aw7zqgxz7l3zgskhzy72lgm1xwl50566s0s45dq7h6ah0vi5d"; depends=[dplyr rlang]; }; + tidylog = derive2 { name="tidylog"; version="1.0.2"; sha256="076am30ayc16wm3bilznxqzd5806yi7dx5m9yv4w7q90i7imsqk7"; depends=[clisymbols dplyr glue tidyr]; }; + tidymodels = derive2 { name="tidymodels"; version="0.1.1"; sha256="0w2xnr642klmqlflkw6rkvqcrgs01i8f34nk9wdax3fsl1yx2wi4"; depends=[broom cli crayon dials dplyr ggplot2 infer magrittr modeldata parsnip purrr recipes rlang rsample rstudioapi tibble tidyr tune workflows yardstick]; }; + tidymv = derive2 { name="tidymv"; version="3.0.0"; sha256="1ihgp9a0l2lrdcibglvsbcizqhq075lhxgsynjg2iqf03b47hqlg"; depends=[dplyr ggplot2 magrittr mgcv rlang tibble tidyr]; }; + tidync = derive2 { name="tidync"; version="0.2.4"; sha256="1nm3021m3xnn4xkprkxd9sj9bwvfbwhrdhfdkfhsc9azqy3rgg9f"; depends=[dplyr forcats magrittr ncdf4 ncmeta purrr rlang RNetCDF tibble tidyr]; }; tidypmc = derive2 { name="tidypmc"; version="1.7"; sha256="1fijlvdiw4vwm34wizm4xlm0x10vvpkldzk7rrla44apq7y2w3yq"; depends=[dplyr readr stringr tibble tokenizers xml2]; }; - tidyposterior = derive2 { name="tidyposterior"; version="0.0.2"; sha256="1sdbar3ycnjqyjy664zyhr9xks48l6g6mw8p5scp31x3gdh352rs"; depends=[dplyr generics ggplot2 purrr rlang rsample rstanarm tibble tidyr]; }; - tidypredict = derive2 { name="tidypredict"; version="0.4.5"; sha256="1i6zl6wjz6wbpkmkc9z9ikp8zgck3qh38lar0r6q2jzl8fxpimg4"; depends=[dplyr generics knitr purrr rlang tibble]; }; - tidyquant = derive2 { name="tidyquant"; version="1.0.0"; sha256="0d84wln98afa23z4sfxpr1xp7p3kjqvnidl69v3l65wi2lkxc87b"; depends=[alphavantager cli crayon dplyr ggplot2 httr lazyeval lubridate magrittr PerformanceAnalytics purrr Quandl quantmod riingo rlang rstudioapi stringr tibble tidyr tidyselect timeDate timetk TTR xml2 xts]; }; - tidyquery = derive2 { name="tidyquery"; version="0.2.0"; sha256="1qhiqaijw71lqv2lffsisk53mvxckr7jj6qxvg9l3wygmhskzkvw"; depends=[dplyr lubridate queryparser rlang stringr]; }; - tidyqwi = derive2 { name="tidyqwi"; version="0.1.1"; sha256="0qrwclaz6cf2wg3rkg2nqjygflj0a1mx4cfbv5lx4r194km2dmr9"; depends=[dplyr furrr future httr jsonlite labelled magrittr purrr stringr tidyr xml2]; }; - tidyr = derive2 { name="tidyr"; version="1.0.2"; sha256="0safj8bcf8libwr0jx4059bmarngvhfddrcv8k5iw39m9lpxs0r4"; depends=[dplyr ellipsis glue lifecycle magrittr purrr Rcpp rlang stringi tibble tidyselect vctrs]; }; - tidyrules = derive2 { name="tidyrules"; version="0.1.3"; sha256="09alqz7rsd98qach8hi28143xgbjapk4m9l47dvk0vpx3mfnkzq3"; depends=[assertthat magrittr partykit purrr stringr tibble]; }; - tidyselect = derive2 { name="tidyselect"; version="1.0.0"; sha256="1bwwsljkg1bxh7xnqxv7n0n1s9y8x407i6lsv826vy1ss1k1fxpy"; depends=[ellipsis glue purrr rlang vctrs]; }; - tidystats = derive2 { name="tidystats"; version="0.4"; sha256="1jxn8la5s3mdh9kbkbvlc5icwa7ymingaxrl0q49ykifrsnbpd4a"; depends=[dplyr jsonlite purrr readr stringr tibble tidyr]; }; - tidystopwords = derive2 { name="tidystopwords"; version="0.9.0"; sha256="1zw6rz8fs8mynaqhrxidrar8vyiq73i8hl4h2lrfz83rxrihbq39"; depends=[dplyr stringr]; }; + tidyposterior = derive2 { name="tidyposterior"; version="0.0.3"; sha256="0wsv800w056ziqbnwal7ncmdy4li8cn5yrdx07w35b7j8kl4mwhg"; depends=[dplyr generics ggplot2 lifecycle purrr rlang rsample rstanarm tibble tidyr vctrs]; }; + tidypredict = derive2 { name="tidypredict"; version="0.4.6"; sha256="1fx1nr8fry3nwy2391g26zkqakdf8f3j7zyrihbc0qhscvbdskiy"; depends=[dplyr generics knitr purrr rlang tibble]; }; + tidyquant = derive2 { name="tidyquant"; version="1.0.1"; sha256="0dr8y0w5kjfwchdnpm4dp2si7bj5wdzvihvlbbj56r3wzvn80kpb"; depends=[alphavantager cli crayon dplyr ggplot2 httr lazyeval lubridate magrittr PerformanceAnalytics purrr Quandl quantmod riingo rlang rstudioapi stringr tibble tidyr tidyselect timeDate timetk TTR xts]; }; + tidyquery = derive2 { name="tidyquery"; version="0.2.1"; sha256="1fy3szbkc5ymswxx3xi1rzd4gvxzsi5imvzf05i7xrh96adzl2f8"; depends=[dplyr lubridate queryparser rlang stringr]; }; + tidyqwi = derive2 { name="tidyqwi"; version="0.1.2"; sha256="16f0c2mdx6aiji6i7237kpc9awqdgrg6rhs408w6ag28dhxpgwlv"; depends=[dplyr furrr future httr jsonlite labelled magrittr purrr stringr tidyr xml2]; }; + tidyr = derive2 { name="tidyr"; version="1.1.1"; sha256="05bv4086axk21gsszx9rvzlz6jq4bcqm462nys8g91gqw003zljh"; depends=[cpp11 dplyr ellipsis glue lifecycle magrittr purrr rlang tibble tidyselect vctrs]; }; + tidyrules = derive2 { name="tidyrules"; version="0.1.5"; sha256="04y6pnrp132sckjpp9g8yl0z7glcsx9dcfdpa8r27wsc2g491i63"; depends=[assertthat magrittr partykit purrr stringr tibble]; }; + tidyselect = derive2 { name="tidyselect"; version="1.1.0"; sha256="14rqx4dq574hilmdwrr34wyjg8rlw4rvndpsqd9plgxm3wwfsdg6"; depends=[ellipsis glue purrr rlang vctrs]; }; + tidystats = derive2 { name="tidystats"; version="0.4.1"; sha256="0njb2wjbca7l5kknlvhdpm655vv76khxyzdb80ha4fi1k13a31ka"; depends=[dplyr jsonlite purrr readr stringr tibble tidyr]; }; tidystringdist = derive2 { name="tidystringdist"; version="0.1.4"; sha256="1srxh5gyspcghzvnmpyq36ky608ipf71vv0s1jg01mgf2i5pdkf4"; depends=[attempt rlang stringdist tibble]; }; - tidytable = derive2 { name="tidytable"; version="0.4.0"; sha256="16svngicns9xwkp1i16c1sd34p1w4np3nfd71pbz1b9w69pzc077"; depends=[data_table magrittr rlang]; }; - tidytext = derive2 { name="tidytext"; version="0.2.4"; sha256="0gck3f039qkpkwn92jlyfan76w0xydg17bh6nsg9qlba7c35kzs6"; depends=[dplyr generics hunspell janeaustenr Matrix purrr rlang stopwords stringr tokenizers]; }; + tidytable = derive2 { name="tidytable"; version="0.5.4"; sha256="02w5j0i44gad8yckiaavpnmy85l1x57vjhxqsvzx404f63mk56sy"; depends=[data_table glue lifecycle magrittr rlang tibble tidyselect vctrs]; }; + tidytext = derive2 { name="tidytext"; version="0.2.5"; sha256="0kwbpffdnqrb6hgrrmrfnx890imbzvp5bs6sj1k72if28qijarm5"; depends=[dplyr generics hunspell janeaustenr Matrix purrr rlang stringr tibble tokenizers]; }; tidytidbits = derive2 { name="tidytidbits"; version="0.2.2"; sha256="1wy1bnfz7jkp357a2d916dmiw36jdqfnkvdg1fa19w8r7zzgrz7d"; depends=[dplyr extrafont forcats magrittr purrr rlang stringr tibble tidyr tidyselect]; }; tidytransit = derive2 { name="tidytransit"; version="0.7.1"; sha256="1n1m67yvlk6fnls5hah43ycvwqvw3c4v6xhmmx06zr92r3lr7xql"; depends=[assertthat data_table digest dplyr hms httr lubridate readr rlang sf tibble tidyr zip]; }; tidytree = derive2 { name="tidytree"; version="0.3.3"; sha256="05b53dap0f784kl6s1wgck6m7brwmy6ifqp7v5l06s1spfspagl6"; depends=[ape dplyr lazyeval magrittr rlang tibble]; }; + tidytuesdayR = derive2 { name="tidytuesdayR"; version="1.0.1"; sha256="0slpfajv5cxqxfb1sh98574zrcgihiazscpr0zga2i6kiwn3kgpy"; depends=[httr jsonlite lubridate magrittr purrr readr readxl rstudioapi rvest usethis xml2]; }; tidyverse = derive2 { name="tidyverse"; version="1.3.0"; sha256="02gyys08qv2v4cl2d66gml4d31ipxay0iyfwwksvxyclx60wp2kd"; depends=[broom cli crayon dbplyr dplyr forcats ggplot2 haven hms httr jsonlite lubridate magrittr modelr pillar purrr readr readxl reprex rlang rstudioapi rvest stringr tibble tidyr xml2]; }; tidyvpc = derive2 { name="tidyvpc"; version="1.0.0"; sha256="1f5ca0cbb3fwsdmb4zvgf8aglajmvks9jqidnx28ppy5w9qv1skc"; depends=[data_table magrittr quantreg rlang]; }; - tidyxl = derive2 { name="tidyxl"; version="1.0.5"; sha256="1ndhlch34aav2ji1adcvljcsy8l388h5vyjby9fvipq7ysa0yxzh"; depends=[piton Rcpp]; }; + tidyxl = derive2 { name="tidyxl"; version="1.0.6"; sha256="0cqagm6bm6bj735hl02qv2anj895j9gywv10igxxh0p8cb40bm6d"; depends=[piton Rcpp]; }; tiff = derive2 { name="tiff"; version="0.1-5"; sha256="0asf2bws3x3yd3g3ixvk0f86b0mdf882pl8xrqlxrkbgjalyc54m"; depends=[]; }; tiger = derive2 { name="tiger"; version="0.2.3.1"; sha256="0xr56c46b956yiwkili6vp8rhk885pcmfyd3j0rr4h8sz085md6n"; depends=[e1071 hexbin klaR lattice qualV som]; }; tigerhitteR = derive2 { name="tigerhitteR"; version="1.1.0"; sha256="0inyi12lf8bn7nbklf2rjixk6wrgrjcp8njv7knai4dgvv7v0rfa"; depends=[Hmisc magrittr openxlsx zoo]; }; - tigerstats = derive2 { name="tigerstats"; version="0.3"; sha256="12wrghipgypkhwwkmaxb6n0qx9fgxk82dc6wlh56rblsvciv2hj0"; depends=[abd ggplot2 lattice manipulate MASS mosaic mosaicData]; }; - tigger = derive2 { name="tigger"; version="0.4.0"; sha256="1ns4shv4aaxlgahy9vy3wxxrnrz4zb0w40fcsldmh5jrvbxhhsb6"; depends=[alakazam doParallel dplyr foreach ggplot2 gridExtra gtools iterators lazyeval rlang shazam stringi tidyr]; }; + tigerstats = derive2 { name="tigerstats"; version="0.3.2"; sha256="0p5z4qh0aznj03rnhk4lpqfkwnsa5zgvj51rddkzligg9zx73xwl"; depends=[abd ggplot2 lattice manipulate MASS mosaic mosaicData rlang]; }; + tigger = derive2 { name="tigger"; version="1.0.0"; sha256="12mcq3mvmcpmb7cc0c3sij03wa9i37c3ilxpa3fm2cr3g3yj2r1v"; depends=[alakazam doParallel dplyr foreach ggplot2 gridExtra gtools iterators lazyeval rlang shazam stringi tidyr]; }; tightClust = derive2 { name="tightClust"; version="1.1"; sha256="0vqkp2g6z8y3b6dhzglmacjhf2qi1sg80kb941mwfafin2k40zbm"; depends=[]; }; tigreBrowserWriter = derive2 { name="tigreBrowserWriter"; version="0.1.5"; sha256="0izgx1khci6qc6pz85dxj75kzxvpr30l0vhcv9476jrcbwqs4k8m"; depends=[DBI RSQLite]; }; - tigris = derive2 { name="tigris"; version="0.9.4"; sha256="1q98zh9zndimpl8zv35r40c8mhr8ncp3bmyxlvhnwvkpc073z90p"; depends=[dplyr httr magrittr maptools rappdirs rgdal sf sp stringr uuid]; }; - tikzDevice = derive2 { name="tikzDevice"; version="0.12.3"; sha256="1d8cxb3srmfv54c61c25myiknkm43ysl69lqjknhaj682x0nyz2r"; depends=[filehash png]; }; + tigris = derive2 { name="tigris"; version="1.0"; sha256="00s4cl3zgc2cqg845sxr2lcqqsvz72sa08zrrfmia1ngqxl6biwp"; depends=[dplyr httr magrittr maptools rappdirs rgdal sf sp stringr uuid]; }; + tikzDevice = derive2 { name="tikzDevice"; version="0.12.3.1"; sha256="040yz6wi05151m9nal97symv66a133kk0a8c1h6nz058zk081vav"; depends=[filehash png]; }; tilegramsR = derive2 { name="tilegramsR"; version="0.2.0"; sha256="11cnyvlghg8z7lr9ahzsjpyjrqnxqs77wdcydqvavrsqj745xvi2"; depends=[sf sp]; }; + tilemaps = derive2 { name="tilemaps"; version="0.2.0"; sha256="06pwwlndb7nvw2b0h0fak3vnpbi11mxsby43qm9ng3k3sqwrqjz2"; depends=[clue ggplot2 igraph lwgeom sf smoothr]; }; tiler = derive2 { name="tiler"; version="0.2.4"; sha256="1j1952vp0gnx0pnhqydipj4qw3cm05im502jc77wb2r1vklwimgb"; depends=[png raster rgdal sp]; }; tilting = derive2 { name="tilting"; version="1.1.1"; sha256="0srvxjv3sg35n7f8pam45ny1z1dxwqjkrz9d91hf67a3fi34f5gk"; depends=[mvtnorm]; }; time2event = derive2 { name="time2event"; version="0.1.0"; sha256="1xkvarw53lcn07wqq7ly5znr6vjq7x72xb0piq5igdmwqmg2y26g"; depends=[survival timereg]; }; timeDate = derive2 { name="timeDate"; version="3043.102"; sha256="0wvl5pq261rvbgly7vilk3x3m9xk3ly6il1i5scwdf6srl1vlz1p"; depends=[]; }; - timeR = derive2 { name="timeR"; version="1.1.0"; sha256="0ksdfk0hchphhixllix4wnm1ig46215093i2jvqlcrkqnx5v2zbz"; depends=[lubridate R6]; }; + timeR = derive2 { name="timeR"; version="1.2.0"; sha256="0lkx2ilbzq29w1c9ssya4f0za0sj7y30y9ml4v3zc21c1la0b6vi"; depends=[lubridate R6]; }; timeROC = derive2 { name="timeROC"; version="0.4"; sha256="1qxijg7hazc8bifwj2254ig2p3cbrp9p0bsyhhh3aikf1rg113v1"; depends=[mvtnorm pec]; }; timeSeq = derive2 { name="timeSeq"; version="1.0.4"; sha256="0m59g12dmnwpmwjmyb9x6z53x3gjmxcaxqva2dlbazsqkbzgaayp"; depends=[gss lattice mgcv pheatmap reshape]; }; timeSeries = derive2 { name="timeSeries"; version="3062.100"; sha256="1ybm4jss8y3px172kfx3mhi68k32dmyb1f21kvgcz7992jpx590l"; depends=[timeDate]; }; timechange = derive2 { name="timechange"; version="0.0.1"; sha256="054zh151am6asadj39nz3l4s37kip0bcjwg8mw59s78s5gyjbwds"; depends=[Rcpp]; }; - timedelay = derive2 { name="timedelay"; version="1.0.8"; sha256="18f8x3lxhh954vn75gjg27iwyi81x7ajh1xh0bxafs7qivnimxvm"; depends=[MASS]; }; + timedelay = derive2 { name="timedelay"; version="1.0.11"; sha256="0hr5a2m621ybvl4qyx1xgwzviszj4ccvb149yclds9z87r5h2gm4"; depends=[MASS mvtnorm]; }; + timedeppar = derive2 { name="timedeppar"; version="1.0"; sha256="1ygaapc0fgivv69ycl7i13qd4qsjvvvpwdswvzv8hgbw6whjj6w8"; depends=[mvtnorm]; }; timeline = derive2 { name="timeline"; version="0.9"; sha256="0zkanz3ac6cgsfl80sydgwnjrj9rm7pcfph7wzl3xkh4k0inyjq3"; depends=[ggplot2]; }; timelineR = derive2 { name="timelineR"; version="1.0.0"; sha256="01bb4201p18l1l5yp622ml9zd8spc978hvhw1s7j57qki5rw4kdf"; depends=[dplyr futile_logger ggplot2 gtable lubridate mtconnectR rlang stringr]; }; timelineS = derive2 { name="timelineS"; version="0.1.1"; sha256="076w8ckzzl59bc1gnwjgdwynnz86320hyfmzb0k26hl3k13jlmxs"; depends=[dplyr ggplot2 lubridate magrittr]; }; timeordered = derive2 { name="timeordered"; version="0.9.9"; sha256="0rfga5i6kckmlz2dzqb1pp634dl93wxp7v3kisxlbjl7mgnbck3k"; depends=[igraph plyr]; }; timeperiodsR = derive2 { name="timeperiodsR"; version="0.6.2"; sha256="09vwp04j7n176xs1lbdmbyi557byx6fdvqyjay1785hkb9ivws5q"; depends=[lubridate]; }; - timereg = derive2 { name="timereg"; version="1.9.4"; sha256="0jxm3h2sjc83klxdry5r1wgliadk6967cmiifycfpz282vpfxx7v"; depends=[lava numDeriv survival]; }; + timereg = derive2 { name="timereg"; version="1.9.6"; sha256="0d7ifm2kynwzgyq4n56jx713vsi6q12fah8i6hb3qdkmz0336gh4"; depends=[lava numDeriv survival]; }; timesboot = derive2 { name="timesboot"; version="1.0"; sha256="1ixmcigi1bf42np93md8d3w464papg9hp85v0c3hg3vl4nsm2bji"; depends=[boot]; }; timeseriesdb = derive2 { name="timeseriesdb"; version="0.4.1"; sha256="1ghb3lg63fs9zx34l5qczv39mdccnmqzlc74l1zhb8qmsg8sm1g2"; depends=[data_table DBI jsonlite openxlsx RPostgreSQL shiny xtable xts zoo]; }; - timetk = derive2 { name="timetk"; version="1.0.0"; sha256="1q8832jhzr5kan1mz1khdaw9p0yd5rii8lnibb02b3zgl2nmn8pk"; depends=[assertthat broom dplyr forcats forecast ggplot2 hms lazyeval lubridate padr plotly purrr readr recipes rlang rsample slider stringi stringr tibble tidyr timeDate xts zoo]; }; + timetk = derive2 { name="timetk"; version="2.2.0"; sha256="001k1619fhb656qrxlixwjyv3drs7cj1kmscw5rn6xwmlixgxvrp"; depends=[anytime assertthat dplyr forcats forecast ggplot2 hms lazyeval lubridate padr plotly purrr readr recipes rlang rsample slider stringi stringr tibble tidyr tidyselect timeDate xts zoo]; }; timetools = derive2 { name="timetools"; version="1.14"; sha256="13jchgd9fc8hxj74wm1kg4rwcng4yxblkq04i33djsqghgb5f9mj"; depends=[]; }; timetree = derive2 { name="timetree"; version="1.0"; sha256="1fpdp6mkwm67svqvkfflvqxn52y2041zl09rxrms28ybbd5f84c0"; depends=[phangorn XML]; }; timevis = derive2 { name="timevis"; version="0.5"; sha256="1psmnl6pkbizi2kjpaz9w32z2dkxlh4r229mfxsfqnjvf9sc34kj"; depends=[htmltools htmlwidgets jsonlite lubridate magrittr rmarkdown shiny]; }; timma = derive2 { name="timma"; version="1.2.1"; sha256="1pypk0pwkhyilh1hsn8hasia1hf6hbskj0xw6vas03k19b6fjnli"; depends=[QCA Rcpp RcppArmadillo reshape2]; }; timsac = derive2 { name="timsac"; version="1.3.6"; sha256="186919qka9j3kfpdw2gbh16n48d6xgz9lfqgk4b17f1d7l72iplg"; depends=[]; }; tinsel = derive2 { name="tinsel"; version="0.0.1"; sha256="0n1x0cf4x6cq1yks0444nxd9snga4m6inc5lfvb7k96fzjb3xgbp"; depends=[]; }; - tint = derive2 { name="tint"; version="0.1.2"; sha256="0afqlyi6d72x30pzzvmznz1l5pq4n30qiqa9ncbf0wjvqji7a182"; depends=[htmltools knitr rmarkdown]; }; + tint = derive2 { name="tint"; version="0.1.3"; sha256="00830n5nl6p73v9w0yzsak56phz4w1fh5lhf1c42gg1i81x7swnx"; depends=[htmltools knitr rmarkdown]; }; tinter = derive2 { name="tinter"; version="0.1.0"; sha256="02hfw2720qn70x0piahm8cy2ajsb5bqapr4vyvknm4v1yka1wmw3"; depends=[chk]; }; tinyProject = derive2 { name="tinyProject"; version="0.6.1"; sha256="0cflnfp5mib3j1y3n5yvi867h5a7z6xr6163gq9y9b6nrl2skxfk"; depends=[brew R_utils]; }; - tinytest = derive2 { name="tinytest"; version="1.1.0"; sha256="1y3f0x56xagf9m5wr2b26qahww13p8i2s66yr51xy9pqxdyjh2yl"; depends=[]; }; - tinytex = derive2 { name="tinytex"; version="0.22"; sha256="0s9f62v3ps5f8903ar6kxlf1z3b4v78vlw1nb05bq55dgj8brg3b"; depends=[xfun]; }; - tiobeindexr = derive2 { name="tiobeindexr"; version="0.1.1"; sha256="09vw83hkf7lgd3xyhbmqkyv57g3dz856230xkf8630jiicfvcg3b"; depends=[rvest xml2]; }; + tinytest = derive2 { name="tinytest"; version="1.2.2"; sha256="1gy4jkwv84xkp1kpanq4jnzg2na97n0a5dh5bv6zp5l440kggrn6"; depends=[]; }; + tinytex = derive2 { name="tinytex"; version="0.25"; sha256="0zbhzxxjlkdj9byxyab477p7cnws5y87nyg989lkzarxdc7dglza"; depends=[xfun]; }; tipom = derive2 { name="tipom"; version="1.0.2-1"; sha256="1gdfv0g5dw742j6ycmi0baqh6xcchp3yf2n1g8vn7jmqgz5mlhdr"; depends=[]; }; tippy = derive2 { name="tippy"; version="0.0.1"; sha256="0kkyi4s4ffpyjyfl89cd5y788ab1p253rx179k422y3y1z6w1md7"; depends=[htmltools htmlwidgets jsonlite shiny]; }; tipr = derive2 { name="tipr"; version="0.1.1"; sha256="138xmkfad0xjrmr9v3ladbwsyknyad27wxcav03n6f72plhxmxb6"; depends=[broom purrr tibble]; }; @@ -14752,7 +15315,7 @@ in with self; { titanic = derive2 { name="titanic"; version="0.1.0"; sha256="0mdmh0ciwfig00847bmvp50cyvj8pra6q4i4vdg7md19z5rjlx3j"; depends=[]; }; titeIR = derive2 { name="titeIR"; version="0.1.0"; sha256="047vidn3zydbjijwgz6qm2d9j2ny8ng2sv5jzm8zb300y7k2426c"; depends=[Iso]; }; titrationCurves = derive2 { name="titrationCurves"; version="0.1.0"; sha256="0z127sihd262mdik46sq9vcf05s7jsqmkpm3p4d779viw74bl768"; depends=[]; }; - tkRplotR = derive2 { name="tkRplotR"; version="0.1.2"; sha256="146jqjnbxqsph804ysd2jrcmm5qvqa7yi4f41sq0myjlkqvd6ndk"; depends=[]; }; + tkRplotR = derive2 { name="tkRplotR"; version="0.1.3"; sha256="0cx1vnsdy9d545dyrjni4diq58mz49sw36bxhn99c1rvflp4npzh"; depends=[]; }; tkrgl = derive2 { name="tkrgl"; version="0.9"; sha256="00767mxsaqkp7wsazznx6pr9dw75xmnijjqncbpavqf67g0cjinp"; depends=[rgl]; }; tkrplot = derive2 { name="tkrplot"; version="0.0-24"; sha256="04gk48vm8ilj1n3b3ir66pcfv504ra4rlgc0ll4ixbnp6w566wr8"; depends=[]; }; tlemix = derive2 { name="tlemix"; version="0.1.3"; sha256="0c4mvdxlhbmyxj070xyipx4c27hwxlb3c5ps65ipm6gi8v8r6spj"; depends=[]; }; @@ -14769,22 +15332,23 @@ in with self; { tm_plugin_mail = derive2 { name="tm.plugin.mail"; version="0.2-1"; sha256="0rn8jqv622qmc0zkz534ka5qnbca2rlabxm3vjbqplr6fh1ahwb1"; depends=[NLP tm]; }; tm_plugin_webmining = derive2 { name="tm.plugin.webmining"; version="1.3"; sha256="1694jidf01ilyk286q43bjchh1gg2fk33a2cwsf5jxv7jky3gl7h"; depends=[boilerpipeR NLP RCurl RJSONIO tm XML]; }; tm1r = derive2 { name="tm1r"; version="1.1.4"; sha256="165yn07nxywyxdd52g917rmzqyjpv6ai11fhl9g6dj163l4vcn5a"; depends=[httr jsonlite]; }; - tmap = derive2 { name="tmap"; version="3.0"; sha256="0xd8kdrn1hvc9r73rjg6cjrvyprqkkriqf2fxnr8mkxv31zmmcg3"; depends=[classInt htmltools htmlwidgets leafem leaflet leafsync RColorBrewer sf stars tmaptools units viridisLite]; }; - tmaptools = derive2 { name="tmaptools"; version="3.0"; sha256="0d36rv9275m32rqx259azqg55f1vpjihydhhic2bh4sjwxrbp58i"; depends=[classInt dichromat KernSmooth lwgeom magrittr raster RColorBrewer sf stars units viridisLite XML]; }; + tmap = derive2 { name="tmap"; version="3.1"; sha256="18gq79s0gi1cdiqx47cdm0vwwvz5jg5y5jccr0i7drmjqmvyk232"; depends=[classInt htmltools htmlwidgets leafem leaflet leafsync RColorBrewer rlang sf stars tmaptools units viridisLite widgetframe]; }; + tmaptools = derive2 { name="tmaptools"; version="3.1"; sha256="0hxcdgicy27jlnza4i0ckrlansjfc9z6wa17c2bfpdmdahbsnfj0"; depends=[classInt dichromat lwgeom magrittr RColorBrewer sf stars units viridisLite XML]; }; tmbstan = derive2 { name="tmbstan"; version="1.0.2"; sha256="1g4b415k36wij028xz15kwpv8hmx92kznsp231bnrprzw2vrninr"; depends=[BH Rcpp RcppEigen rstan StanHeaders TMB]; }; tmcn = derive2 { name="tmcn"; version="0.2-13"; sha256="0rf8mz6kdm83pm85kzfyzb8kd3iwaxv5bgphjpxlnq6z32m9yds7"; depends=[]; }; tmg = derive2 { name="tmg"; version="0.3"; sha256="0yqavibinzsdh85izzsx8b3bb9l36vzkp5a3bdwdbh410s62j68a"; depends=[Rcpp RcppEigen]; }; - tmle = derive2 { name="tmle"; version="1.4.0.1"; sha256="009mndjjbbq8g02a053gdisxnxj4p06ysnmkbrw04vj9w1zpnph7"; depends=[glmnet SuperLearner]; }; + tmle = derive2 { name="tmle"; version="1.5.0-1"; sha256="14rxdsqrjqr1vl0qy4hjpp1mchyn58za673hjc9r3n20591zghcz"; depends=[glmnet SuperLearner]; }; tmle_npvi = derive2 { name="tmle.npvi"; version="0.10.0"; sha256="00jav1ql3lv18wh9msxnjvz36z2ds44fdi6lrp1pfphh1in4vdcl"; depends=[geometry MASS Matrix R_methodsS3 R_oo R_utils]; }; - tmod = derive2 { name="tmod"; version="0.40"; sha256="157m5jjkfd7g9aih5zylxzwkkdryj9l6yapgwjqydvwj6ab6k67l"; depends=[beeswarm plotwidgets tagcloud XML]; }; + tmod = derive2 { name="tmod"; version="0.44"; sha256="1xp0lhjqfaw3zgdd7binz3nd9pjmr1v7h6a76li8a4mhkwrls5yk"; depends=[beeswarm gplots plotwidgets RColorBrewer tagcloud XML]; }; tmpm = derive2 { name="tmpm"; version="1.0.3"; sha256="1fqk39zyc07gh0ygi7pfljlnj6ih37jsb7bcxm05zcd4796wil8j"; depends=[reshape2]; }; tmt = derive2 { name="tmt"; version="0.2.1-0"; sha256="1drb0z9jk76ixn3qw7xb5rirfc9h0frkhl1krs681aiaspqkgswj"; depends=[ggplot2 Rcpp]; }; - tmvmixnorm = derive2 { name="tmvmixnorm"; version="1.0.2"; sha256="04bjdlrz82v9skirap2fmngi2sv9xakkgmkgpwdv3qshszvx3wz4"; depends=[]; }; + tmuxr = derive2 { name="tmuxr"; version="0.2.4"; sha256="0wz33sgnmcsrd1z7nsskqjhngwjkyvqd7isxcrxzkwd33naa8144"; depends=[processx]; }; + tmvmixnorm = derive2 { name="tmvmixnorm"; version="1.1.0"; sha256="1vrdchj2h9dnia08i2184sqwj4rnppj6ya8qxb16hp6lfv5yblla"; depends=[MASS]; }; tmvnsim = derive2 { name="tmvnsim"; version="1.0-2"; sha256="03xsvsg9bqvgl98ywid3h91mmlhax5s6wvmypp3hq91vmc5kvxlp"; depends=[]; }; tmvtnorm = derive2 { name="tmvtnorm"; version="1.4-10"; sha256="1w3kmpx25l7rb80vpclqq4pbbv12qgysyqxjq3lp55l9nklkb7qs"; depends=[gmm Matrix mvtnorm]; }; tnet = derive2 { name="tnet"; version="3.0.16"; sha256="0922y9zb64zazl2irwfxxbghkgcwi2q57gylpiaxgmj4q6lc62l9"; depends=[igraph survival]; }; toOrdinal = derive2 { name="toOrdinal"; version="1.1-0.0"; sha256="0zg4zk7jx8s57g8nb0jw7r7gss00349jmkglf6sz26p7jldpgmff"; depends=[crayon testthat]; }; - todor = derive2 { name="todor"; version="0.1.0"; sha256="0xgw2mz0b96adycwfyga17r5s9k47q5bgvnsxmqm4h6mx7d1fzzx"; depends=[rex rstudioapi stringr]; }; + todor = derive2 { name="todor"; version="0.1.1"; sha256="13idn5wq8r9m7yx4wnbazp5lnc3bpx4gh6chcq7abj53ms734pc3"; depends=[rex rstudioapi stringr]; }; togglr = derive2 { name="togglr"; version="0.1.33"; sha256="105c9vxa67bqccj31ksk5myfd0v7v0wbz6qqjhxqndlg7v6ggfzc"; depends=[assertthat dplyr getPass glue httr jsonlite keyring lubridate magrittr parsedate prettyunits purrr rstudioapi]; }; tokenbrowser = derive2 { name="tokenbrowser"; version="0.1.4"; sha256="09bhwqqw2nr5c985ml8d6ik19r8jvxcj1l7v4xhb3y6n9k6dqxwr"; depends=[Rcpp stringi]; }; tokenizers = derive2 { name="tokenizers"; version="0.2.1"; sha256="006xf1vdrmp9skhpss9ldhmk4cwqk512cjp1pxm2gxfybpf7qq98"; depends=[Rcpp SnowballC stringi]; }; @@ -14799,6 +15363,7 @@ in with self; { topologyGSA = derive2 { name="topologyGSA"; version="1.4.6"; sha256="0vas7qab5a86jb277ql63qjvfvx7iqqbcrwky7iyr0s8p8p794ia"; depends=[fields graph gRbase qpgraph]; }; topsis = derive2 { name="topsis"; version="1.0"; sha256="056cgi684qy2chh1rvhgkxwhfv9nnfd7dfzc05m24gy2wyypgxj3"; depends=[]; }; tor = derive2 { name="tor"; version="1.1.2"; sha256="1s34hzw3a4cm9gk85fcxgxwmn2xc7njs1iw1snd91id3gdl6vppx"; depends=[fs readr rlang tibble]; }; + torch = derive2 { name="torch"; version="0.0.1"; sha256="1fp362g6c4c7nc8gvcwsmrd8578kw1r3zk03wfaq9chr2858h4vh"; depends=[R6 Rcpp rlang withr]; }; tosca = derive2 { name="tosca"; version="0.2-0"; sha256="0sq6libv2vi5q3738fksjxabfhv63zc7nldgb4nh6k57yxqzwf3z"; depends=[data_table htmltools lda lubridate quanteda RColorBrewer stringr tm WikipediR]; }; tosls = derive2 { name="tosls"; version="1.0"; sha256="03nqwahap504yvcksvxdhykplbzmf5wdwgpzm7svn8bymdc472v2"; depends=[Formula]; }; totalcensus = derive2 { name="totalcensus"; version="0.6.3"; sha256="0489bzc8y4zgs4rpd52xbc2hm7g0y46j40f5bmqp5h56aq259jsa"; depends=[data_table magrittr purrr stringr]; }; @@ -14811,41 +15376,40 @@ in with self; { tpe = derive2 { name="tpe"; version="1.0.1"; sha256="0zsa8vb4qmln3sb4lplv43lh50yys9vfd3rxfp6qxqqjxivd0xsh"; depends=[]; }; tpr = derive2 { name="tpr"; version="0.3-1.2"; sha256="0fnvzvis75gfkmxhyx6h3g4ps4rs07abk36r03108qwsmhcfk3y7"; depends=[lgtdl]; }; tracer = derive2 { name="tracer"; version="1.0.0"; sha256="1jdh4ljcz7d0w2y5miggqkvv397jdx7fn108hbjw93af2gnh698q"; depends=[clisymbols crayon prettycode]; }; - tracerer = derive2 { name="tracerer"; version="2.0.2"; sha256="0xh95qrd63s04zs69fcrmvwscn153qlpw2xlkzn8h6jwsd92amv9"; depends=[jsonlite Rcpp testit]; }; + tracerer = derive2 { name="tracerer"; version="2.1"; sha256="0bmx3474chqs6pr4zq5gvjpwdvrs55s97jzkmga7yblz4blfg49g"; depends=[jsonlite Rcpp testit]; }; tracheideR = derive2 { name="tracheideR"; version="0.1.1"; sha256="1x1jwzgs2aqb3k17mm9mhfhnbwcmilhkjaz9rl40rcg84xjqdrpl"; depends=[tgram]; }; track = derive2 { name="track"; version="1.1.9"; sha256="1d0hab7xyayyhyyrbv8nvpka1kzry4yx10fg8aqwkca3nm7n2q3c"; depends=[]; }; trackdem = derive2 { name="trackdem"; version="0.5.2"; sha256="1kax2fr252rd0pqdf7ndgl8pb492fs1scn8xyasxxjdnlghdkk0d"; depends=[MASS neuralnet png raster Rcpp RcppArmadillo shiny]; }; trackdf = derive2 { name="trackdf"; version="0.2.1"; sha256="18kiwbrfalj19gjp2v3yhxlmc6liw5scfnwx2svq5f5h3h54a7iz"; depends=[data_table lubridate rgdal sp tibble]; }; trackeR = derive2 { name="trackeR"; version="1.5.2"; sha256="1f3giz6naxxyicgy9v0391ang43srwhy9zbiv4zmlc8i9v05b57i"; depends=[fda foreach ggmap ggplot2 ggridges gridExtra gtable jsonlite leaflet raster RSQLite scam sp xml2 zoo]; }; - trackeRapp = derive2 { name="trackeRapp"; version="1.0"; sha256="05r012kcf86j45q00y6ynz9srd0by45w41bpx9mf7q4h8m5nm0jn"; depends=[changepoint colorspace DT foreach mapdeck mgcv plotly sf shiny shinydashboard shinyjs shinyWidgets trackeR V8 zoo]; }; + trackeRapp = derive2 { name="trackeRapp"; version="1.1"; sha256="0pys5vw3268j90i2gg6b1sgbx917vvk0x9k2ryh3l3p96vkrqv87"; depends=[changepoint colorspace DT foreach mapdeck mgcv plotly sf shiny shinydashboard shinyjs shinyWidgets trackeR V8 zoo]; }; trackr = derive2 { name="trackr"; version="0.10.6"; sha256="0p7i4cj5z1qis2a1mqqz3wrgwhhbcggyyfwj3zycm3xcig9f6d9b"; depends=[CodeDepends fastdigest ggplot2 gridGraphics histry htmltools lattice miniUI RJSONIO rlang rmarkdown roprov rsolr shiny]; }; tractor_base = derive2 { name="tractor.base"; version="3.3.2"; sha256="0y5gm0y4chl30f5qqq8qiiw4j8g32s4i9xrvyp3cwg902kf2p86i"; depends=[ore reportr RNifti shades]; }; + trade = derive2 { name="trade"; version="0.5.5"; sha256="0brpvqj1zkic4ja6nbh2zxrlkmhj1ri4s04046pb9grycrxv93j1"; depends=[antitrust]; }; tradestatistics = derive2 { name="tradestatistics"; version="1.0"; sha256="09zbgf971gb1m5d1jfwkdrj78ckj3gq5i03p9wfxbljb7rqby6la"; depends=[crul data_table digest jsonlite memoise]; }; trafo = derive2 { name="trafo"; version="1.0.1"; sha256="0gq3snjpkw0ncny7pkfi686qkgdhd8id73jxjk3chhqf5mzrrsbc"; depends=[FNN lmtest moments pryr]; }; traineR = derive2 { name="traineR"; version="1.0.0"; sha256="0m0k9hxdpx8dzxdy8i0k2rqmibm78fkw8fykkm5r56g7zjh3b7g0"; depends=[ada dplyr dummies e1071 kknn neuralnet nnet randomForest rpart stringr xgboost]; }; traipse = derive2 { name="traipse"; version="0.1.0"; sha256="0174rxc3p3s848s9ynkkw32f33dq9gnq7zd14i3b9xnp8zr9jnph"; depends=[geodist geosphere magrittr]; }; traitdataform = derive2 { name="traitdataform"; version="0.5.7"; sha256="1h01hkxx3xz1kaliq3arx8hb82k9jx19s755y6xbyji6jp6hwy3h"; depends=[data_table getPass plyr RCurl reshape2 taxize units XML]; }; - traitr = derive2 { name="traitr"; version="0.14"; sha256="1pkc8wcq55229wkwb54hg9ndbhlxziv51n8880z6yq73zac1hbmf"; depends=[digest gWidgets proto]; }; traits = derive2 { name="traits"; version="0.4.2"; sha256="1aiy7mdwji72rrmf8gwmnpkhfbqbqbblffxghniw5pfpv55j6mib"; depends=[crul data_table hoardr httr jsonlite readr rvest taxize tibble xml2]; }; traj = derive2 { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5pccrah44nmalssc6qfrgys4n"; depends=[cluster GPArotation NbClust pastecs psych]; }; - trajectories = derive2 { name="trajectories"; version="0.2-1"; sha256="0sw1gcwmz2d27ck8gm5xa9bmmpgpy483brdyi74wccchwb3nfw2m"; depends=[lattice sp spacetime zoo]; }; + trajectories = derive2 { name="trajectories"; version="0.2-2"; sha256="064hyk8v8my8kr05bi8grv3p04a5i97vdky5i7z3zka64l2f3kqr"; depends=[lattice sp spacetime zoo]; }; trajr = derive2 { name="trajr"; version="1.3.0"; sha256="1p092kqvwg3ncbk9hh8dij2grl1hfs3j5j64cqn227nr5b3xn1rc"; depends=[plotrix signal]; }; - tram = derive2 { name="tram"; version="0.3-2"; sha256="043j8f2vhbm4alr47bv0ghv4358ckvd74hnlq8516b6is3ll1h72"; depends=[basefun Formula Matrix mlt multcomp sandwich survival variables]; }; - tramME = derive2 { name="tramME"; version="0.0.2"; sha256="1khzxjk1wp3gbhjxjlq07rmqr1rydjdbkl03fd6ld1dh1knl4bwp"; depends=[alabama basefun lme4 Matrix mlt nlme RcppEigen TMB tram variables]; }; - tramnet = derive2 { name="tramnet"; version="0.0-2"; sha256="0q57cs9y0ssks7c9bbnhkvndl1yz6bsrpmcmml1nlvq2gs9rv9wg"; depends=[basefun CVXR lhs mlr mlrMBO mlt ParamHelpers sandwich smoof tram]; }; - tranSurv = derive2 { name="tranSurv"; version="1.2.0"; sha256="0r698s2yg7ypyzid52a46p0bhl3xi4rh50bfnx0pacc65rigjr6f"; depends=[SQUAREM survival]; }; + tram = derive2 { name="tram"; version="0.4-0"; sha256="0fjdwzvqm14kx2fjryf3by1m44f22nwfy0jk7kd6v4rhxh22dlw3"; depends=[basefun Formula Matrix mlt multcomp sandwich survival variables]; }; + tramME = derive2 { name="tramME"; version="0.0.3"; sha256="1k7al49pgdr7bvsf8p6qrb1qz96lqfagvcnf59kxibi2rdixrqk1"; depends=[alabama basefun lme4 Matrix mlt nlme RcppEigen TMB tram variables]; }; + tramnet = derive2 { name="tramnet"; version="0.0-3"; sha256="1mii4dw244glq7yy0zmaicr8gpqdh0m3jxjv4sm2vn7w5bj7w44n"; depends=[basefun CVXR lhs mlr mlrMBO mlt ParamHelpers sandwich smoof tram]; }; + tranSurv = derive2 { name="tranSurv"; version="1.2.1"; sha256="0fpfzq00va05y6hp4yy5h8rdmfqjcnqp69lyic9mrxkma4nhd4nd"; depends=[rootSolve SQUAREM survival truncSP]; }; transcribeR = derive2 { name="transcribeR"; version="0.0.0"; sha256="0y2kxg2da71i962fhsjxsr2ic3b31fmffhj3gg97b0nykfpcviib"; depends=[httr]; }; - transformr = derive2 { name="transformr"; version="0.1.1"; sha256="186n789zzf2p9ggw9j7gmd4knfq051jhl35x1585jgll2karyn2c"; depends=[lpSolve Rcpp rlang sf tweenr]; }; + transformmos = derive2 { name="transformmos"; version="0.1.0"; sha256="1hsp399cj6cnsysb4hm4ra075qm2fxkjhyq16m3nai51fvzkak0p"; depends=[]; }; + transformr = derive2 { name="transformr"; version="0.1.3"; sha256="1dn6h8i7vli2zv4408djyg74j9fv9sjrqf75hx9dh7qnj352wf69"; depends=[lpSolve Rcpp rlang sf tweenr]; }; translate = derive2 { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; }; translateR = derive2 { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; }; translation_ko = derive2 { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; }; - transmem = derive2 { name="transmem"; version="0.1.0"; sha256="1rx83cwx8mg2iyqqq2bb4yp8bpa6n6pxm6af7jkyp1gafnv7dvci"; depends=[cmna ggformula ggplot2 plot3D]; }; + transmem = derive2 { name="transmem"; version="0.1.1"; sha256="1a3c5ddmh9k4f80rbk363s7rkx30qhk9ssmf7xg7rr0lwxphahf3"; depends=[cmna ggformula ggplot2 plot3D]; }; transplantr = derive2 { name="transplantr"; version="0.2.0"; sha256="1kzi8rvswsmibxqnhqd1j42y848si6cxd8hpvwi55y8s4hcylw0y"; depends=[]; }; transport = derive2 { name="transport"; version="0.12-2"; sha256="1d49gm5lwih7b7rav3c42brcp6xi3y55xw11r9n8illjwjayfcxd"; depends=[data_table Rcpp RcppEigen]; }; trapezoid = derive2 { name="trapezoid"; version="2.0-0"; sha256="0f6rwmnn61bj97xxdgbydi94jizv1dbq0qycl60jb4dsxvif8l3n"; depends=[]; }; - trawl = derive2 { name="trawl"; version="0.2.1"; sha256="1ns4nk8zdnl2z9clc2q38sbb1ijkj86lcifxq7d111mcwsmpb6fi"; depends=[DEoptim MASS rootSolve Runuran squash TSA]; }; tree = derive2 { name="tree"; version="1.0-40"; sha256="1rr6ws62j9h36f3nl713f8h3ndkh95mv46l055jvgmby5lw1dazz"; depends=[]; }; - tree_bins = derive2 { name="tree.bins"; version="0.1.1"; sha256="1flrkhdqimsn8dxn97xzl1fykx916i1dis1bfany44yk0cjmd85g"; depends=[data_table dplyr rpart rpart_utils]; }; tree_interpreter = derive2 { name="tree.interpreter"; version="0.1.1"; sha256="18p1x53q1hhhagglgsq2axnr9l5rpa08vxjayqqmb6rsjrkygn78"; depends=[Rcpp RcppArmadillo]; }; treeClust = derive2 { name="treeClust"; version="1.1-7"; sha256="1s7kh6q0bkixsygrip95zf1bi10ihddsa5lq9dfxd68yh8rsby6z"; depends=[cluster rpart]; }; treeDA = derive2 { name="treeDA"; version="0.0.4"; sha256="0zhzb21lvxk278ysl275g39y2r8dlgqdix5rfg2pwv3nzj2531rc"; depends=[ggplot2 gtable Matrix mvtnorm phyloseq reshape2 sparseLDA]; }; @@ -14855,18 +15419,19 @@ in with self; { treecm = derive2 { name="treecm"; version="1.2.2"; sha256="0vrawg4vvy270dn20gb2k99xi4q89l4mjz0mm7ikpz8wxqypzq2l"; depends=[plyr]; }; treedater = derive2 { name="treedater"; version="0.5.0"; sha256="007rdrbv3v1z3qbyasla22rck105sqlqh93yfmxklihdydl7smfd"; depends=[ape limSolve]; }; treefit = derive2 { name="treefit"; version="1.0.0"; sha256="10yf4bm26vgiy3ra0c5lpflp0xdijw9zwl4aq9bz89qhszzji1fa"; depends=[ggplot2 igraph patchwork pracma]; }; + treeheatr = derive2 { name="treeheatr"; version="0.1.0"; sha256="08mvw4fw56y6vmzz0js7scbrac9w29b5rhfl0fnk8q00fn9vhy84"; depends=[cluster dplyr ggnewscale ggparty ggplot2 gtable partykit seriation tidyr yardstick]; }; treelet = derive2 { name="treelet"; version="1.1"; sha256="0k3qhxjg7ws6jfhcvvv9jmy26v2wzi4ghnxnwpjm8nh7b90lbysd"; depends=[]; }; + treeman = derive2 { name="treeman"; version="1.1.4"; sha256="1rlq8sklvpj6an8x9wvs3501y6dpl2vhl5zfmz0yvmif04msf49v"; depends=[ape bigmemory plyr RJSONIO stringr]; }; treemap = derive2 { name="treemap"; version="2.4-2"; sha256="15bdgkdwryb55v82b3hpcx4ykfg5z7zf10h0wwknf6kl1kn34v90"; depends=[colorspace data_table ggplot2 gridBase igraph RColorBrewer shiny]; }; treemapify = derive2 { name="treemapify"; version="2.5.3"; sha256="1y6fyzxk542fp4h975xfgajz7cjym3rjs6asal9arv94a9cqra33"; depends=[ggfittext ggplot2]; }; treenomial = derive2 { name="treenomial"; version="1.1.2"; sha256="0nn5vd23nxfpk8wm68m6sxnx495nb6bkgx2w9lgjy4s66sbnddp0"; depends=[ape Rcpp RcppArmadillo RcppThread]; }; treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; }; - treeplyr = derive2 { name="treeplyr"; version="0.1.7"; sha256="11y15dslalwifarz79zyc5vxszyajkjyzm98p0w1n8gfr6lrq9yy"; depends=[ape dplyr geiger lazyeval phytools Rcpp]; }; treespace = derive2 { name="treespace"; version="1.1.3.2"; sha256="18xqvqpcknvwdvl84jskcwmsw3alcwns0d35a8paalwjkix03175"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn phytools Rcpp rgl RLumShiny scatterD3 shiny shinyBS]; }; treestartr = derive2 { name="treestartr"; version="0.1.0"; sha256="05rxy9lmb77ng4266871sd881mlp4rd5qalvsd7ps2x2j4plaqf4"; depends=[ape phytools]; }; treestructure = derive2 { name="treestructure"; version="0.1.0"; sha256="0514q53bdwv9fwd58srhr6lzw1j56fcd64hml8w4rv4wzcd6c01m"; depends=[ape Rcpp]; }; trekcolors = derive2 { name="trekcolors"; version="0.1.1"; sha256="1fw2wgkkky79vy9sc3cn42vmfcdnsjsnhb81wvalwi6ww64fzrkh"; depends=[ggplot2]; }; trekfont = derive2 { name="trekfont"; version="0.9.3"; sha256="15p1r5q36fbajhwidjhhvvldckvz5js08w4cnj47gqr4lpmmpbx7"; depends=[]; }; - trelliscopejs = derive2 { name="trelliscopejs"; version="0.2.4"; sha256="0dx4r31v1611yimqx9jh5ikrrk6ipz6dpqci7wxy3lbrcdsz0acq"; depends=[autocogs base64enc digest DistributionUtils dplyr ggplot2 gtable htmltools htmlwidgets jsonlite knitr progress purrr rlang tidyr webshot]; }; + trelliscopejs = derive2 { name="trelliscopejs"; version="0.2.5"; sha256="12yanm6p9ygb7z1cg526f70i2a6179icyals69vkf8rjkd0n6si5"; depends=[autocogs base64enc digest DistributionUtils dplyr ggplot2 gtable htmltools htmlwidgets jsonlite knitr progress purrr rlang tidyr webshot]; }; trelloR = derive2 { name="trelloR"; version="0.1.0"; sha256="0d549yw9pfxs8a3q716z08fzg68bkm5l09cv5iqqkm4gyasrxsf4"; depends=[dplyr httr jsonlite]; }; trend = derive2 { name="trend"; version="1.1.2"; sha256="09b6ycyfgs4xlhx6kn6qm5rl2acp58hzhv8qclzn3kb1wjjyvxy5"; depends=[extraDistr]; }; trendchange = derive2 { name="trendchange"; version="1.1"; sha256="19r0kmwsim78ynssyh6j0zd99cz96cacy3hmyrjabwwvz0f8sk3h"; depends=[]; }; @@ -14876,7 +15441,7 @@ in with self; { triangle = derive2 { name="triangle"; version="0.12"; sha256="1cv3l97myhkyl0c4xjympqghlk0av8xfk00av8kj93ndgkv5bfj7"; depends=[]; }; triangulation = derive2 { name="triangulation"; version="0.5.0"; sha256="1zp09g0s0qpqgz2k6jx32pswh2zqyyd0b62lf1dx1p46m28dafkn"; depends=[]; }; tribe = derive2 { name="tribe"; version="0.1.8"; sha256="01z1b9k3j4xi5fp9pkpr991yr7x8vk8vysipy7iwdmdr7xg4w4p0"; depends=[dplyr lazyeval magrittr rlang rstudioapi]; }; - tricolore = derive2 { name="tricolore"; version="1.2.1"; sha256="04ihsgy6l8nlfp1q8c14g56v2inpw48mlhni4xqfqb7mzvalvhf8"; depends=[assertthat ggplot2 ggtern shiny]; }; + tricolore = derive2 { name="tricolore"; version="1.2.2"; sha256="0pxahddc3dah4n4xk4i0dkiwvh4wf03gcx8q3nfrsk07zzap1zh1"; depends=[assertthat ggplot2 ggtern shiny]; }; triebeard = derive2 { name="triebeard"; version="0.3.0"; sha256="1hqyz57gph02c9fdc07lxz113bbklif3g18sw8jan6pakhhdc7dz"; depends=[Rcpp]; }; trigpoints = derive2 { name="trigpoints"; version="1.0.0"; sha256="1hckjh2gb0fvd2c8x6mj0idpk3im7b831y7mbli1hqhry6qqdw15"; depends=[sf tibble]; }; trimTrees = derive2 { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[mlbench randomForest]; }; @@ -14885,15 +15450,15 @@ in with self; { trimr = derive2 { name="trimr"; version="1.0.1"; sha256="0gcn18nwxmax9c35is0nldyh74cw8rg3gj60cixzs9qjnpb9xx3d"; depends=[]; }; trinROC = derive2 { name="trinROC"; version="0.4"; sha256="02civ3r14hr6gbw6bdh77y00kiki6cdcv85hxk5g6n2nfspdr67r"; depends=[ggplot2 gridExtra rgl]; }; trioGxE = derive2 { name="trioGxE"; version="0.1-1"; sha256="1ra86l3i7fhb6nsy8izixyvm6z23shv7fcjmnnpil54995j15ax4"; depends=[gtools mgcv msm]; }; - trip = derive2 { name="trip"; version="1.6.0"; sha256="089wwdbf3mqz2gxskr9pwi124qbmjf6s9gq7vfrjyhcbp4xx8hwp"; depends=[geodist glue maptools MASS raster sp spatstat viridis]; }; + trip = derive2 { name="trip"; version="1.7.1"; sha256="0arw4x4f8ccp26qg8nmqfsadks2wqjbdwacy8wq9wnyqmk1jdff9"; depends=[crsmeta geodist glue maptools MASS raster reproj sp spatstat traipse viridis]; }; tripEstimation = derive2 { name="tripEstimation"; version="0.0-44"; sha256="1ylpyzlqr6l5haxq4icnlxw6vgvc2lsfz5sm2wqqm4m6h3p0i6s6"; depends=[lattice mgcv rgdal sp zoo]; }; - tripack = derive2 { name="tripack"; version="1.3-9"; sha256="044cda8vg1mz9zlkhlxxz258qwmlr912zyrndbl14jw94c66fh1b"; depends=[]; }; + tripack = derive2 { name="tripack"; version="1.3-9.1"; sha256="1ghza4by6shalsnqybn5qgv076dxh59b6vycg9v6ii216zbgi0kz"; depends=[]; }; + triplot = derive2 { name="triplot"; version="1.3.0"; sha256="1apmdpxdnnmjyi7gcrjrqw44iqphr84nbgw0nfxcspzjgxhc81l1"; depends=[DALEX ggdendro ggplot2 glmnet patchwork]; }; tripsAndDipR = derive2 { name="tripsAndDipR"; version="0.1.0"; sha256="1gm96fxgql9y08w177nyxw0bahyafcs75maz743a9hfb0gjixvy2"; depends=[]; }; triversity = derive2 { name="triversity"; version="1.0"; sha256="1bar2bpy8jvj91jmzzdwy6rlvirsbxrzqnx4r825irqhc69gc53r"; depends=[data_tree Matrix]; }; tropAlgebra = derive2 { name="tropAlgebra"; version="0.1.1"; sha256="1idvhxhw2f6z8iq0nfdj6jmzy8913vid84rvln6rx2dkzw3s9wnl"; depends=[]; }; tropicalSparse = derive2 { name="tropicalSparse"; version="0.1.0"; sha256="1ay6i3pzz5lpvznxqln31mijp86p6z0df7rvp0gm4lxvn294m7f8"; depends=[]; }; trotter = derive2 { name="trotter"; version="0.6"; sha256="0i8r2f2klkkfnjm7jhvga3gx6m7r97pd73d88004jzlm9ficspgy"; depends=[]; }; - trread = derive2 { name="trread"; version="0.2.7"; sha256="158mwnwkmwjvir8caz42jqc599xn9qkqx6bsi76m8l6szf09s0sl"; depends=[assertthat data_table dplyr here hms htmltools httr lubridate magrittr readr rlang scales stringr tibble tidyr zip]; }; trtf = derive2 { name="trtf"; version="0.3-7"; sha256="11fq119x59adls2r0af2p19zwbk5ykn5brdzqbqxy8ngmpncmzxr"; depends=[Formula libcoin mlt partykit sandwich variables]; }; truelies = derive2 { name="truelies"; version="0.2.0"; sha256="1qxzw7x7xgp9x6klnq6jv0fl8al2l24br2sd59r5gq076gkqc47k"; depends=[hdrcde]; }; trueskill = derive2 { name="trueskill"; version="0.1"; sha256="0mqvm64fcsxjlh789lqdk6l28q31yhh6jjirwjlgbpxxb90c5107"; depends=[]; }; @@ -14902,6 +15467,7 @@ in with self; { truncgof = derive2 { name="truncgof"; version="0.6-0"; sha256="0b499i9zjwvva5jfl9fj02jjrgy8myxqfjwa0cjg0jrpgxczgwg8"; depends=[MASS]; }; truncnorm = derive2 { name="truncnorm"; version="1.0-8"; sha256="0zn88wdd58223kibk085rhsikl4yhlrwiyq109hzjg06hy6lwmj9"; depends=[]; }; truncreg = derive2 { name="truncreg"; version="0.2-5"; sha256="1scbjh5k1b8cjjavax08grlxdfs75s63dss0ifpz4d0axc4nm3iy"; depends=[maxLik]; }; + trundler = derive2 { name="trundler"; version="0.1.19"; sha256="0g97bn90k1843lw5x3d02347lpz4l53vvpazgfvnd99ai65fp0b1"; depends=[dplyr glue httr jsonlite magrittr progressr tibble tidygraph tidyselect urltools]; }; trust = derive2 { name="trust"; version="0.1-8"; sha256="1b6wsx4vybr5952ii3ska6jbcb3654iibz83n645khxfca5k8blm"; depends=[]; }; trustOptim = derive2 { name="trustOptim"; version="0.8.6.2"; sha256="1nsl8jd6cna52b5dd92jw3sh84jqpg7gazskn7166bcjbph19bf7"; depends=[Matrix Rcpp RcppEigen]; }; trustedtimestamping = derive2 { name="trustedtimestamping"; version="0.2.6"; sha256="1rx7ypy331mq5ni5hxhqcfnicvwdgg9j2pm3aj097a5hhigibdrq"; depends=[digest httr jsonlite]; }; @@ -14913,31 +15479,32 @@ in with self; { tsSelect = derive2 { name="tsSelect"; version="0.1.8"; sha256="0ysijzhhwaj5n7h50jacshnla6d0h61q0f6lj19ic0lwvlz4yazy"; depends=[forecast]; }; tsallisqexp = derive2 { name="tsallisqexp"; version="0.9-3"; sha256="0mzqplsj2w4a7jnav43afyk8ymy6p444j7km6kc8c2g4aifpgxcb"; depends=[]; }; tsapp = derive2 { name="tsapp"; version="1.0.0"; sha256="0dakmzm65y6w3idfynnigcmyw0n28scfgklmmg7lg8ycsxh0x76l"; depends=[fftwtools Matrix vars]; }; - tsbox = derive2 { name="tsbox"; version="0.2.0"; sha256="0kyw276qi20801ps3kd61k1s4vs0znsyzzy8mwjq312cbjisg6mc"; depends=[anytime data_table]; }; + tsbox = derive2 { name="tsbox"; version="0.2.1"; sha256="0k5azdn4af6mwcx1lf8ns83nim34kfsb9m26h3yjm9mk9qixr6k1"; depends=[anytime data_table]; }; tsc = derive2 { name="tsc"; version="1.0-3"; sha256="1acsdkxizlkix1sskwqv2a80rshw6f14zvcsjhrmmdfd4bmwh36y"; depends=[]; }; tscount = derive2 { name="tscount"; version="1.4.2"; sha256="15lvrglv4lq17g425s9lkcb3f04bk0322yl32648ysf7gp7lmdx5"; depends=[ltsa]; }; tsdb = derive2 { name="tsdb"; version="0.7-1"; sha256="0ngy897fmf48c7k54zq8lx2fyv45c0kzn3bxm5054ay2lkv02idz"; depends=[datetimeutils fastmatch zoo]; }; tsdecomp = derive2 { name="tsdecomp"; version="0.2"; sha256="1wy37gjp49dr60s4zhwv19iv3mzr1fjz5yilqmqgy78j5d45ns15"; depends=[]; }; + tsdf = derive2 { name="tsdf"; version="1.1-8"; sha256="00s0aiis88611xsq9px61f9gwprp803wcvi5milvc7qckrh1kw0z"; depends=[]; }; tsdisagg2 = derive2 { name="tsdisagg2"; version="0.1.0"; sha256="1vjypf9d4rdprpgxfsgpccn412kvar59v341ridq2hcdp7hfb70s"; depends=[]; }; tseries = derive2 { name="tseries"; version="0.10-47"; sha256="0yzvc9djp3angvxdxqi60wi726y76ablsb71q88ycvw0avgpf8r0"; depends=[quadprog quantmod zoo]; }; tseriesChaos = derive2 { name="tseriesChaos"; version="0.1-13.1"; sha256="0qfrrzd0h8n9zp7wj5fl88wkiv22fs5zy8x509g316j0avm5zjr3"; depends=[deSolve]; }; tseriesEntropy = derive2 { name="tseriesEntropy"; version="0.6-0"; sha256="04clfkpkiy5p5nxcq59c7f4v1llj1d95lvck23h1px50lvb993fv"; depends=[cubature ks]; }; tsfa = derive2 { name="tsfa"; version="2014.10-1"; sha256="0gkgl55v08dr288nf8r769f96qri7qbi5src7y6azrykb37nz6iz"; depends=[dse EvalEst GPArotation setRNG tfplot tframe]; }; - tsfeatures = derive2 { name="tsfeatures"; version="1.0.1"; sha256="11ysmi9jd3x92fcylw6jbg62fdmdbi58nnasz0pm3ji46knwnd5n"; depends=[ForeCA forecast fracdiff furrr future purrr RcppRoll tibble tseries urca]; }; + tsfeatures = derive2 { name="tsfeatures"; version="1.0.2"; sha256="1zi7p7gdd9bg6rpdin88rq9qi43cpk663xmvffa7d5p1w45831kd"; depends=[forecast fracdiff furrr future purrr RcppRoll tibble tseries urca]; }; tsfgrnn = derive2 { name="tsfgrnn"; version="0.1.0"; sha256="1kx4q1a12yrngg1jps4jk2k5svnmsl1lhybb6ziypza20hmmzral"; depends=[ggplot2]; }; - tsfknn = derive2 { name="tsfknn"; version="0.3.0"; sha256="0h44s8bvnd68nhl0rbwvs0sycsjlmpnni0nr2169429a9y3f91f1"; depends=[ggplot2]; }; + tsfknn = derive2 { name="tsfknn"; version="0.4.0"; sha256="1ji4y4khxzpk8k3m97p6j2li4khg17z9qzfgwjxijaxl4mwq54i2"; depends=[ggplot2 Rcpp]; }; tsgui = derive2 { name="tsgui"; version="0.0.3"; sha256="16cx68gq2f63wx7mhbv0aq6pr71wfbc035kjbjjsfrbagaq4ib13"; depends=[RandomFieldsUtils tcltk2 tkrplot]; }; tsiR = derive2 { name="tsiR"; version="0.4.2"; sha256="1yc9kcyj8yg7zsdkqsxkr7czv3i5gf2146z5h89qfqifrrzmjifa"; depends=[ggplot2 kernlab reshape2]; }; - tsibble = derive2 { name="tsibble"; version="0.8.6"; sha256="1vm4rwfflrc87xj6sn8xa0lqdvs1k4hviar0glm9v0dhbk81bbbj"; depends=[anytime dplyr lifecycle lubridate purrr rlang tibble tidyselect vctrs]; }; - tsibbledata = derive2 { name="tsibbledata"; version="0.1.0"; sha256="17qvjfkppg1z4pxgax37ikx2x28ib39syps5vhppc1y3yn8441vq"; depends=[tsibble]; }; + tsibble = derive2 { name="tsibble"; version="0.9.2"; sha256="15bdhwzrppnq96jzj6lkn8jlrqwja6qvxznk5xkym3hillyi0jfh"; depends=[anytime dplyr ellipsis lifecycle lubridate purrr rlang tibble tidyselect vctrs]; }; + tsibbledata = derive2 { name="tsibbledata"; version="0.2.0"; sha256="0lkpxhahyglh8h9pwwi57gqyqxirw4m1cr5cryxzs6gfsrx7dpbf"; depends=[tsibble]; }; tsintermittent = derive2 { name="tsintermittent"; version="1.9"; sha256="1mrb6yrsjwj6j40n97sgg42ddvwhjnaiq9k7ka249bbq01gf2975"; depends=[MAPA]; }; tsmp = derive2 { name="tsmp"; version="0.4.14"; sha256="1ahqdizygbs49xbgn35fdb5drxwyx2z9ima4fm83aqwaan7wrrja"; depends=[audio checkmate doSNOW foreach magrittr progress Rcpp RcppParallel RJSONIO]; }; tsna = derive2 { name="tsna"; version="0.3.1"; sha256="15dx5inmlk05asakjv3jzlycid307xjpy4x2h52phix69ghbb95v"; depends=[network networkDynamic statnet_common]; }; tsne = derive2 { name="tsne"; version="0.1-3"; sha256="0s8cv2pndkddq62rzlgzgfdjp1vjv5hz5i5957sllnb97vbzbzb6"; depends=[]; }; - tsnetwork = derive2 { name="tsnetwork"; version="1.2"; sha256="14rx2idlmsdik17fbzmdkgpj5jyrirga6cklhxflrbk9zjmlii00"; depends=[igraph longitudinal QUIC]; }; tsoutliers = derive2 { name="tsoutliers"; version="0.6-8"; sha256="02qd7ky416yp2l4cfl2yl7ckr2aidkps9cxkk03r9r7c5247c6zh"; depends=[forecast]; }; tspmeta = derive2 { name="tspmeta"; version="1.2"; sha256="028jbbd0pwpbjq4r6jcc1h0p7c4djcb9d2mvgzw1rmpphaxjvrkd"; depends=[BBmisc checkmate fpc ggplot2 MASS splancs stringr TSP vegan]; }; tsqn = derive2 { name="tsqn"; version="1.0.0"; sha256="1iv1wwa6a9824dbgfk5a609szppc3a8j250z74hb8csjvwwx9qq9"; depends=[fracdiff MASS robustbase]; }; + tsriadditive = derive2 { name="tsriadditive"; version="1.0.0"; sha256="1zk97vz5ag6j0r8w3b5kgl2cx628jmdy73spmwmsw7x5yc24901d"; depends=[survival]; }; tstools = derive2 { name="tstools"; version="0.3.8"; sha256="0daxrp91hxc367hlzla0s7x5dddnx462239jcq0ickx6awkk753g"; depends=[data_table jsonlite xts zoo]; }; tsutils = derive2 { name="tsutils"; version="0.9.2"; sha256="0gp8f0a9dn3h4lv38xiw04j832igwhfralzc5vd74r952x7b6hbx"; depends=[forecast MAPA plotrix RColorBrewer]; }; tsviz = derive2 { name="tsviz"; version="0.1.0"; sha256="099ga750kr9hrkd8vaxhz6h4gha6zfr9jzqwrmgms2h2h1a7jxr7"; depends=[dplyr forecast ggplot2 lubridate magrittr miniUI plotly shiny shinyhelper]; }; @@ -14948,21 +15515,21 @@ in with self; { ttTensor = derive2 { name="ttTensor"; version="0.99.2"; sha256="1qhpsaa0m8g61mhdffnrpfsc66iwm240na2wsa3cnmydk1mqjlxd"; depends=[Matrix PTAk rTensor tensorr]; }; ttbary = derive2 { name="ttbary"; version="0.1-1"; sha256="028v4kgli3bdsa6cn9wz9g1c3n0r1cms70yhxgq829i8f9qw2mss"; depends=[Rcpp spatstat]; }; ttbbeer = derive2 { name="ttbbeer"; version="1.1.0"; sha256="1azffcizm3460kxvrxxkilc6qxspyi247x8drrw5ywfichwhmdhc"; depends=[]; }; - ttdo = derive2 { name="ttdo"; version="0.0.4"; sha256="1hq1s2rsngx496mhrf9pnpvp25805f17pfj7l0dm5g7lmiq24rr8"; depends=[diffobj tinytest]; }; + ttdo = derive2 { name="ttdo"; version="0.0.6"; sha256="1p7anl980nl5wxgymw24apwg48wh6c2mzl0h1zifrarpj8a9v0k2"; depends=[diffobj tinytest]; }; ttestshiny = derive2 { name="ttestshiny"; version="0.1.0"; sha256="186569p9h3597z9lxyzm7fj8k6bzgm2kw757dcv2qhhf2k7nfch9"; depends=[dplyr shiny shinyAce shinyjs]; }; tth = derive2 { name="tth"; version="4.12-0"; sha256="0bwn8xxswkilv0gagh54fiw90pvjzpz6w6ky4prc3mm070plqf4b"; depends=[]; }; tttplot = derive2 { name="tttplot"; version="1.1.1"; sha256="0rmgp1888y07w0h8kwq1azpr6bysjq4pyjf6ygpra75jj4563wx9"; depends=[]; }; ttutils = derive2 { name="ttutils"; version="1.0-1"; sha256="18mk30070mcplybg320vjbk9v5flxnbqi5gx0yyr1z6ymjmnrxbc"; depends=[]; }; ttwa = derive2 { name="ttwa"; version="0.8.5.1"; sha256="1lhypcwssq0dspizvln3w4dg16ad6mz8cj4w34c5vsrayqid7fyn"; depends=[data_table]; }; - tuber = derive2 { name="tuber"; version="0.9.8"; sha256="1jic7x72m66317r86k3h7zcvk6lj8v930hrjzf8s47bx56kgbvk5"; depends=[dplyr httr jsonlite plyr purrr]; }; + tuber = derive2 { name="tuber"; version="0.9.9"; sha256="1nnjwn3c0rr90jvkwlh9xs5vc2nl6qzjj958hbddfrkny0w88mnp"; depends=[dplyr httr jsonlite plyr purrr]; }; tubern = derive2 { name="tubern"; version="0.1.0"; sha256="0wpn4aig6r1kpncrgrqra4kr0f07rdq7z4p2k0h28f7kww6l52vv"; depends=[httr jsonlite]; }; tuckerR_mmgg = derive2 { name="tuckerR.mmgg"; version="1.5.1"; sha256="0lrylh0np0kbl4xx3gmlvid0g11fh0ad39wdwbz6hrmf5pzsjdjq"; depends=[]; }; - tufte = derive2 { name="tufte"; version="0.5"; sha256="0d3imnnrk4yq8la9n8sy2rlq30na8nbhfq2n5cc2k0pc2dg97jvj"; depends=[htmltools knitr rmarkdown xfun]; }; + tufte = derive2 { name="tufte"; version="0.6"; sha256="1a0m5mii1hcr5w2jg3pv21c903042y96ippfqy4lsf0wsps77ywj"; depends=[htmltools knitr rmarkdown xfun]; }; tufterhandout = derive2 { name="tufterhandout"; version="1.2.1"; sha256="04fvvbx69a28nk7i4wz5ynamz1yvsa2ibz542r1xaq1ikk0ywqbw"; depends=[knitr rmarkdown]; }; tukeytrend = derive2 { name="tukeytrend"; version="0.7"; sha256="15j7g0drb92rpxq7d0jl9h0hxpi9pbgpvfcxaicrcgypxap3721q"; depends=[lme4 Matrix mgcv multcomp nlme pbkrtest]; }; tumblR = derive2 { name="tumblR"; version="1.2"; sha256="1qili2c9wb6hpjjf7m0gyvdymzls5w4pghjkyi3sbp0q7ayhbh12"; depends=[httr RCurl RJSONIO stringr]; }; tumgr = derive2 { name="tumgr"; version="0.0.4"; sha256="1ylfmrsg177g75l2scjpgw6v4dpz62r7cy89pql9zd5zqy167xqj"; depends=[minpack_lm]; }; - tune = derive2 { name="tune"; version="0.1.0"; sha256="0xiidzkl0hbd0f7jh1v2kkg26wdgy33w74c9bmpjgy317ckhsz8h"; depends=[cli crayon dials dplyr foreach ggplot2 glue GPfit hardhat lifecycle parsnip purrr recipes rlang rsample tibble tidyr workflows yardstick]; }; + tune = derive2 { name="tune"; version="0.1.1"; sha256="0293xkmv1nyvm72wxznnlm3qpf6475xzl2sf52mnrjxxr7i447p1"; depends=[cli crayon dials dplyr foreach ggplot2 glue GPfit hardhat lifecycle parsnip purrr recipes rlang rsample tibble tidyr vctrs workflows yardstick]; }; tuneR = derive2 { name="tuneR"; version="1.3.3"; sha256="0av978m4h2iqazyfq6n2cgkh4wpllihh7s29lah2nb8ngc0w5hxx"; depends=[signal]; }; tuneRanger = derive2 { name="tuneRanger"; version="0.5"; sha256="1xf78q8f7sq6w2jjwcw8vz88bmbp8yivydmqygjag58abnhd0356"; depends=[BBmisc DiceKriging lhs lubridate mlr mlrMBO ParamHelpers ranger smoof]; }; tuple = derive2 { name="tuple"; version="0.4-02"; sha256="0fm8fsdfiwknjpc20ivi5m5b19r9scdxhzij70l8qi3ixw1f0rnk"; depends=[]; }; @@ -14972,7 +15539,7 @@ in with self; { tutorial = derive2 { name="tutorial"; version="0.4.3"; sha256="0sxdlpw0w4azlaxdlk36ycrric6pbj2zi4nyv26pgsp0cr1hrx6r"; depends=[base64enc knitr markdown rjson]; }; tuts = derive2 { name="tuts"; version="0.1.1"; sha256="0mwc6lsnhxww041wh3020wz7w812asp1d6djv4n9pl7jil0kvkry"; depends=[coda doParallel foreach lomb mcmcplots rjags truncnorm]; }; tvR = derive2 { name="tvR"; version="0.3.1"; sha256="056a241m3c1jhf8idly1bm4xja349cg5yzz19l45zyggml82snin"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; }; - tvReg = derive2 { name="tvReg"; version="0.5.1"; sha256="18jif10pm1lsc9dwrb81cd55n6c6hdbhp01bk7q511lkzdx403hc"; depends=[bvarsv MASS Matrix plm systemfit vars]; }; + tvReg = derive2 { name="tvReg"; version="0.5.3"; sha256="12ln2mkhxhp6i2x928cz2y7i1xsqrr3840rvp7k4c4skj2mrb898"; depends=[bvarsv MASS Matrix plm systemfit vars]; }; tvd = derive2 { name="tvd"; version="0.1.0"; sha256="07al7gpm81a16q5nppsyc5rhv6zzkcvw72isx955b1q189v073aw"; depends=[Rcpp]; }; tvgeom = derive2 { name="tvgeom"; version="1.0.1"; sha256="1lr2vqgj5jfhzavwd43wcchhbicmf4dqjvyf66rvnjkw3jaig8dm"; depends=[]; }; tvm = derive2 { name="tvm"; version="0.4.0"; sha256="0v5b9s35q08a4z2ccph7g9q211w04x99sh72lrfby43fgl2jwyd1"; depends=[ggplot2 reshape2]; }; @@ -14987,20 +15554,23 @@ in with self; { twitteR = derive2 { name="twitteR"; version="1.1.9"; sha256="1hh055aqb8iddk9bdqw82r3df9rwjqsg5a0d2i0rs1bry8z4kzbr"; depends=[bit64 DBI httr rjson]; }; twitterwidget = derive2 { name="twitterwidget"; version="0.1.1"; sha256="1dlhydhy69284gg3jsxwa6h8cp1rlkg1j8h8z1fjz4fyy1p5xrpv"; depends=[htmlwidgets]; }; twl = derive2 { name="twl"; version="1.0"; sha256="0n2r40ddsr5zpzi92k7f0lvq78k5cmfbqzjxvr78hwq6j13dhar3"; depends=[corrplot data_table MCMCpack Rfast]; }; - twosamples = derive2 { name="twosamples"; version="1.0.0"; sha256="0i8k157ph2whll72a590rnafgjx767k8vxy5d8x9dq7s4baiw1cx"; depends=[Rcpp]; }; + twn = derive2 { name="twn"; version="0.1.0"; sha256="1mzd1563wq8j2kq1h3pgh04cgjg9lq3nn6zp3ka10aln012y0cxk"; depends=[crayon dplyr memoise rlang tibble]; }; + twosamples = derive2 { name="twosamples"; version="1.1.1"; sha256="0c2hk49zysjgkgm3pv9j1gnpg5hs5icdzn40ihyqj8aziynkripp"; depends=[Rcpp]; }; twostageTE = derive2 { name="twostageTE"; version="1.3"; sha256="0mkxs3lmzja51zdrf5himhwcdygpj6czhdd2bydakm26kvw7znwr"; depends=[isotone]; }; - twoway = derive2 { name="twoway"; version="0.6.2"; sha256="0q053jvb2sa762bjnpzkxzdcq1wk82ynp4rjl4j6qncqccvqq0c3"; depends=[]; }; + twoway = derive2 { name="twoway"; version="0.6.3"; sha256="02z2syb0g92d97gjxfkarpil9b2n25s128606h071jl0s88cr4ar"; depends=[]; }; txtplot = derive2 { name="txtplot"; version="1.0-4"; sha256="00sriml48y70j18jz235dsfm5x3a81bnzskfp3hnv6cbjwwsmca4"; depends=[]; }; - txtq = derive2 { name="txtq"; version="0.2.0"; sha256="1w4dmws2l0r5bbx2n2g79dfrpa8dz4hlg8raphgh8mimf1skfb3h"; depends=[base64url filelock R6]; }; + txtq = derive2 { name="txtq"; version="0.2.3"; sha256="03pa5mj5ijzvyzzjr9l84xrz4kdam4w90l7apgjwxgnag3p3c0p8"; depends=[base64url filelock R6]; }; types = derive2 { name="types"; version="1.0.0"; sha256="01shcin8wjbhbmzl979fj3008xqxssw90g3bjg42cnjxkmnaql59"; depends=[]; }; + tzupdater = derive2 { name="tzupdater"; version="0.1.1"; sha256="056ssg1hi5i4qypacpy1q08l8awn4hj34jfriwv6x97l7cssw3bx"; depends=[]; }; uCAREChemSuiteCLI = derive2 { name="uCAREChemSuiteCLI"; version="0.2.0"; sha256="1nccgkxv57inhgvgmhwm4fr8cp28sj8n83za5gam9xx1f42mzsqk"; depends=[ChemmineR usethis]; }; - uFTIR = derive2 { name="uFTIR"; version="0.1.1"; sha256="0lpp768x87czdcb6gdgsp454faakx0gdmk9mh1zzh5ljzkxdvbxv"; depends=[raster Rcpp RcppArmadillo rgdal sp]; }; + uFTIR = derive2 { name="uFTIR"; version="0.1.2"; sha256="1ds2ip02f4jh2i0n9f22v4c62xr82cak69w7yjf1k014rzq1yp60"; depends=[raster Rcpp RcppArmadillo rgdal sp]; }; uGMAR = derive2 { name="uGMAR"; version="3.2.5"; sha256="0dxi261qbnaqryqmbmja56wkj2h9nn5yk5pmz8axdyakbqgasfwp"; depends=[Brobdingnag pbapply]; }; uHMM = derive2 { name="uHMM"; version="1.0"; sha256="1516ipadxi7rc1dbinr5rva2fbcr5i2zg3rlli5wy7r6naf8fzzl"; depends=[chron class cluster clValid corrplot FactoMineR HMM tcltk2 tkrplot]; }; - uaparserjs = derive2 { name="uaparserjs"; version="0.3.1"; sha256="0pmdkc108rvk1bsq0b7pmvvhp2ghm728d34rmz20abpmcy5hiwlw"; depends=[progress V8]; }; - uavRmp = derive2 { name="uavRmp"; version="0.5.4"; sha256="0djx6z9489pr03bf01y2d79ar840q4ffj39j72c8phz27yz40y04"; depends=[brew data_table devtools gdalUtils geosphere htmltools htmlwidgets log4r maptools raster rgdal rgeos roxygen2 sf sp spatial_tools stringr zoo]; }; - ubiquity = derive2 { name="ubiquity"; version="1.0.1"; sha256="1aachql6k1fldfliv8gkny91rxca5h60is4cj98mizipc9cal7jz"; depends=[deSolve digest doParallel flextable foreach gdata ggplot2 gridExtra knitr MASS officer optimx PKNCA pso rhandsontable rmarkdown rstudioapi shiny stringr]; }; + uaparserjs = derive2 { name="uaparserjs"; version="0.3.5"; sha256="0v24smgsz1p2wa23mc2llx7dycwmgf7zyxdhwxgwplabpmy3xzhl"; depends=[progress V8]; }; + uavRmp = derive2 { name="uavRmp"; version="0.5.7"; sha256="04dv1a72b0v8lgdwl10n96953gfal6pmbbih45szdvk4zhks030j"; depends=[brew data_table exifr geosphere jsonlite link2GI log4r raster rgdal rgeos rlang rlist sf sp zoo]; }; + ubiquity = derive2 { name="ubiquity"; version="1.0.2"; sha256="1xlxiyzzhsaamwf42gv2h50rchapw81gkf1v08almd1s6ds4vpgf"; depends=[deSolve digest doParallel flextable foreach gdata ggplot2 gridExtra knitr MASS officer optimx PKNCA pso rhandsontable rmarkdown rstudioapi shiny stringr]; }; ucbthesis = derive2 { name="ucbthesis"; version="1.0"; sha256="0l855if3a7862lxlnkbx52qa617mby634sbb2gkprj21rwd7lcbp"; depends=[knitr stringr]; }; + uchardet = derive2 { name="uchardet"; version="1.0.6"; sha256="02ys3x5gc42c4c9acnxj7j54x1i7xr82341hp2jq5mn6q65gdnyi"; depends=[Rcpp]; }; uclust = derive2 { name="uclust"; version="0.2.0"; sha256="1hvyrkah0yfia5wwr42q6axja56qwnils84pg25znq39fjly6hjf"; depends=[dendextend robcor]; }; ucminf = derive2 { name="ucminf"; version="1.1-4"; sha256="01vggwg1w71k98qs6fhb0x1843vi322mf4g3hbclks94kcpkisx2"; depends=[]; }; udapi = derive2 { name="udapi"; version="0.1.3"; sha256="0qyn6fdh8ia913hn2dl0x99xsm20ps8zm52snswlyb00prinm668"; depends=[curl httr]; }; @@ -15008,54 +15578,56 @@ in with self; { udunits2 = derive2 { name="udunits2"; version="0.13"; sha256="0yav7rm2afcx67xqrknybxgz7x63w78zyxa0xifvc0k2gz0d6mfi"; depends=[]; }; ufs = derive2 { name="ufs"; version="0.3.1"; sha256="079azpicvimjq7qw1790j5f0vq5jis67lv4r28x3390r9fh04m6l"; depends=[digest diptest dplyr GGally ggplot2 ggrepel ggridges gridExtra gtable knitr pander plyr scales SuppDists viridis]; }; ui = derive2 { name="ui"; version="0.1.1"; sha256="15hcdzaj75ip6j7yglx8rqhp4y3yf3aw5cpbjgk1mjr4cya7lvzi"; depends=[Matrix maxLik mvtnorm numDeriv]; }; - uiucthemes = derive2 { name="uiucthemes"; version="0.3.0"; sha256="0bby3a1fdh3y7yia38qy2gjgcqxkkvp4k13b6iabj219yck9a4lq"; depends=[rmarkdown xaringan]; }; + uiucthemes = derive2 { name="uiucthemes"; version="0.3.1"; sha256="1faggg8hiqw4pblq5r3m9wi3x5m6kbjq0flf88mqa993v9rpdrf6"; depends=[rmarkdown xaringan]; }; ukbabynames = derive2 { name="ukbabynames"; version="0.1.1"; sha256="0vrwcf3hixd40ag6kb289anq2ys2k6vdhhsrjbizvndkyn8sr0r0"; depends=[]; }; ukbtools = derive2 { name="ukbtools"; version="0.11.3"; sha256="1j5p9ypn3s781582all64kvywih1ry0lqsh1zirr35g7r46fy783"; depends=[data_table doParallel dplyr foreach ggplot2 magrittr purrr readr scales stringr tibble tidyr XML]; }; ukgasapi = derive2 { name="ukgasapi"; version="0.17"; sha256="1jly1bzisvvx8pcsw0fb35xxvjgq7ydpxianf3dbxa88msdjr02d"; depends=[RCurl XML]; }; uklr = derive2 { name="uklr"; version="1.0.1"; sha256="0pr0qyf8zr8z1hzv8wziw9wddajja5dggs9cc9dw91v0kq5g5ris"; depends=[curl httr jsonlite tibble]; }; - ukpolice = derive2 { name="ukpolice"; version="0.1.4"; sha256="1ffrdl39fi5h68r1wm54q2y883ygz5lybd3jpmyd959zsj452559"; depends=[jsonlite purrr tibble]; }; + ukpolice = derive2 { name="ukpolice"; version="0.2.2"; sha256="1dwwixhiarlpdss7rhiamzcsl1k2yphgmjzh7wn2my4vxj06817l"; depends=[httr jsonlite purrr snakecase tibble]; }; ulid = derive2 { name="ulid"; version="0.3.0"; sha256="0xxkqrnlz3pkb3s1gacfzqav54w97gc0w8rh0fn1qy5rkmg2bplv"; depends=[Rcpp]; }; - umap = derive2 { name="umap"; version="0.2.5.0"; sha256="0qp8zbh6fn8kn6q2h2lyjgmq3pr6gqwsd8ymqx25px13zjhxch9d"; depends=[openssl Rcpp reticulate RSpectra]; }; + umap = derive2 { name="umap"; version="0.2.6.0"; sha256="0zajn2sk705sckljxl5vz4q2sxpsqim2grmjq2jwwc8ysr1h2s9f"; depends=[openssl Rcpp reticulate RSpectra]; }; ump = derive2 { name="ump"; version="0.5-8"; sha256="1sg226caq9y41cwl7wr5s9z3bpq2j5p6rj6fy2pasbzimgzw0byx"; depends=[]; }; - umx = derive2 { name="umx"; version="3.0.6"; sha256="0jbwmn8mj4ff2wzv3pwqf6ddhvbrm21n20ilj5h9fyjafcspfq9w"; depends=[cowplot DiagrammeR ggplot2 knitr lavaan MASS Matrix MuMIn mvtnorm nlme OpenMx polycor R2HTML RCurl xtable]; }; + umx = derive2 { name="umx"; version="4.0.0"; sha256="171zk1ahwlk5arhqwl9kwif7l59w7a6hjlp08ywybvd43r8js9bg"; depends=[cowplot DiagrammeR ggplot2 knitr lavaan MASS Matrix MuMIn mvtnorm nlme OpenMx polycor R2HTML RCurl xtable]; }; unbalanced = derive2 { name="unbalanced"; version="2.0"; sha256="18hy9nnq42s1viij0a5i9wzrrfmmbf7y3yzjzymz2wnrx4f2pqwv"; depends=[doParallel FNN foreach mlr RANN]; }; unbalhaar = derive2 { name="unbalhaar"; version="2.0"; sha256="0v6bkin1cakwl9lmv49s0jnccl9d6vdslbi1a7kfvmr5dgy760hs"; depends=[]; }; uncertainty = derive2 { name="uncertainty"; version="0.2.0"; sha256="1mq14ny7l3gy3wjsqijnm37azavyapxszjnckd861h4hgcpdcdjz"; depends=[mvtnorm triangle]; }; uncmbb = derive2 { name="uncmbb"; version="0.2.1"; sha256="0ilbsl6hww613i6in9x4v8knx9vlv6hiycgl2879aiq456ghx91m"; depends=[dplyr rlang]; }; understandBPMN = derive2 { name="understandBPMN"; version="1.1.1"; sha256="04wnyxplrn5c6jb76dw25pawwcvvn5xq80lqn5imsf31nbwybpm5"; depends=[devtools dplyr purrr R_utils Rcpp tibble tidyr usethis XML]; }; unfoldr = derive2 { name="unfoldr"; version="0.7"; sha256="18qjsmlbqy9nhwyv288r9n3plv22fgb4g73jpyjyzy3hzfamcb17"; depends=[]; }; - unglue = derive2 { name="unglue"; version="0.0.1"; sha256="0avk5d4dgbmqvmqlr5kbhg3qsyg5rxmw9icadivaahzf4znav5x4"; depends=[]; }; + unglue = derive2 { name="unglue"; version="0.1.0"; sha256="0w8ld4xllx0lj1jz8i2sj92f8136hlwri1d8ldpg1ymxj7aw93vg"; depends=[]; }; ungroup = derive2 { name="ungroup"; version="1.1.5"; sha256="0247mzicghdy2s41dsf1f2yx9j0j4qnahmh1bjaiwl4q1541k3l0"; depends=[MortalitySmooth pbapply Rcpp RcppEigen Rdpack rgl]; }; unheadr = derive2 { name="unheadr"; version="0.2.1"; sha256="0pglf4sxq7f5rf1a87zz0nzjd4npdymazg4zpmmfiwc07lh8g7pr"; depends=[dplyr forcats magrittr readxl rlang stringr tibble tidyr tidyxl]; }; uniReg = derive2 { name="uniReg"; version="1.1"; sha256="0wjc7pgaisvk26j7grxp2ypsabb5my9wg6c9i5w9zhh5jdx1fdab"; depends=[DoseFinding MASS mvtnorm quadprog SEL]; }; uniah = derive2 { name="uniah"; version="1.0"; sha256="19zwy33gwa749i81mi9h05k8k3l4xbbln3k6q70fa7ic5lqbbdzj"; depends=[ahaz Iso survival]; }; unifDAG = derive2 { name="unifDAG"; version="1.0.3"; sha256="052qjrnj04imhj6i62k8jdx9rs8r70n0qrmd2z45x4fimn5py6j5"; depends=[gmp graph]; }; - unifed = derive2 { name="unifed"; version="1.1.2"; sha256="04598l4ngf0v9j49m9gzxls7z2aal76pddprliqh1qbb694yq44r"; depends=[]; }; + unifed = derive2 { name="unifed"; version="1.1.3"; sha256="0krxw4hy93a9qq78hwsc39rscbz6j8rr5qhplca0ska1xp36p09f"; depends=[]; }; uniformly = derive2 { name="uniformly"; version="0.1.0"; sha256="0n3s0x05v4d79jn51nwj06gm074rgy269f57y2q5z0bkwyp6yc7n"; depends=[pgnorm]; }; uniftest = derive2 { name="uniftest"; version="1.1"; sha256="0a37m7l3lc6rznx10w9h9krnn5paim2i2wvw47ckwag7bv0d4pm4"; depends=[orthopolynom]; }; unikn = derive2 { name="unikn"; version="0.2.0"; sha256="1lw3wn93bb8y76phnqwhvgn14zrs68rq8xx9hl2wbngispvwpwn1"; depends=[ggplot2]; }; unine = derive2 { name="unine"; version="0.2.0"; sha256="051dk8fss19h4d9815a7994krr1s3n5q0pxq9gir6zns0vvn05pw"; depends=[Rcpp]; }; uniqtag = derive2 { name="uniqtag"; version="1.0"; sha256="025q71mzdv3n1jw1fa37bbw8116msnfzcia01p1864si04ch5358"; depends=[]; }; - unisensR = derive2 { name="unisensR"; version="0.3.2"; sha256="0scqkbjlnln6vc9i0i3hpsx5mw6c8w22pc3dhy8bwyrjndcd54yy"; depends=[XML]; }; - unitedR = derive2 { name="unitedR"; version="0.3.1"; sha256="06plbhjbn1gflpxarn21knhiwfr02vxprak9qcghl30fkkymd02r"; depends=[plyr]; }; - unitizer = derive2 { name="unitizer"; version="1.4.9"; sha256="1p5isrc9vszfkx9z4fg02ag9cgw0qa8zwh20h7kwn0j1i40gdzzp"; depends=[crayon diffobj]; }; - units = derive2 { name="units"; version="0.6-6"; sha256="11x6xz1fbml28xmrhgn4sii9vfyj3gyfc1dfxahdg9cszdmcgdnh"; depends=[Rcpp]; }; + unisensR = derive2 { name="unisensR"; version="0.3.3"; sha256="1pqfb8i3rj64l9hh1bn9mm78wlfqphgrlp7zrydznqy88f4jwgvy"; depends=[hexView vroom XML]; }; + unitedR = derive2 { name="unitedR"; version="0.4"; sha256="0h4i814awb8419693jz3x5cyhs2x6y5flmz339bg6ivmg13d9h3s"; depends=[plyr]; }; + unitizer = derive2 { name="unitizer"; version="1.4.10"; sha256="0xp6js2w0c0j0prahc7ndlhaiaw17n7r69k71v2r1cfkpmvm0ivf"; depends=[crayon diffobj]; }; + units = derive2 { name="units"; version="0.6-7"; sha256="1rdpbkiqcabz00fqzzs98v89v4cgvcd4pb00pwxzkq6vmwmscwrz"; depends=[Rcpp]; }; unittest = derive2 { name="unittest"; version="1.4-0"; sha256="1wyiikccnkw8fzrjrb2a80lw2xyiii4zb0hrbzfszy2bd6prqxx4"; depends=[]; }; - univOutl = derive2 { name="univOutl"; version="0.1-5"; sha256="193wrpkvgmlrx43nag8w3ivrlqm37nm6g86wcvd3bgw3hchs70gi"; depends=[Hmisc robustbase]; }; + univOutl = derive2 { name="univOutl"; version="0.2"; sha256="0rlc3w7cx2hfxacpjs9kmjzv5p8v9wxnlpxi3rh276wiy5zdr91v"; depends=[Hmisc robustbase]; }; unival = derive2 { name="unival"; version="1.0.2"; sha256="1sw0z7dmicmka3znrc1c5v0s9g8cpqapacdjzl5i4k5ak2qq35qp"; depends=[optimbase psych]; }; - univariateML = derive2 { name="univariateML"; version="1.0.0"; sha256="1l8b9fll93nhspbhrap94sdgdmligb49qlzvlm0x4msqmh085ib4"; depends=[actuar assertthat extraDistr logitnorm nakagami tibble]; }; + univariateML = derive2 { name="univariateML"; version="1.1.0"; sha256="1bnpb1g6hm8p3q73kyb4mxijzj53cfp38ns98bq12m9yvsjq1c4n"; depends=[actuar assertthat extraDistr fGarch logitnorm nakagami tibble]; }; + universals = derive2 { name="universals"; version="0.0.3"; sha256="0pf3hf3f46rj0h4054ha2cndwhcyv1zm52cmcqf95qy7r2kq8i5a"; depends=[]; }; unix = derive2 { name="unix"; version="1.5.1"; sha256="0kb54lgzqnp1nwl8lw2531qj3858szsv7wz17g6lqxkfxsww5vv8"; depends=[]; }; - unjoin = derive2 { name="unjoin"; version="0.0.4"; sha256="094hpb0w6j4l0kmqh9wgfpsya5ldjxm3fms7px4pvj8nqx29ga80"; depends=[dplyr rlang tibble]; }; - unmarked = derive2 { name="unmarked"; version="0.13-2"; sha256="07i0fiz155vs6cbhpg5gx77syf9phswhpz7vg3xxr16i0qdnh3h2"; depends=[lattice MASS Matrix plyr raster Rcpp RcppArmadillo]; }; - unpivotr = derive2 { name="unpivotr"; version="0.5.1"; sha256="0j2q98xm3gg3mscn9ckl4pcihwc4p5gn4sk5sr1nqi4ghc047qaf"; depends=[cellranger dplyr forcats magrittr pillar purrr rlang tibble tidyr tidyselect xml2]; }; + unjoin = derive2 { name="unjoin"; version="0.1.0"; sha256="1hp9fxkb59z0cpnwxpaf5whglrljg2nrmsygdb98klxsama9gr5z"; depends=[dplyr rlang tibble]; }; + unmarked = derive2 { name="unmarked"; version="1.0.1"; sha256="1r60rr2670fwnfsfx56ql0r26279nv5ziwrd90wflyaagbf9pfx3"; depends=[lattice MASS Matrix plyr raster Rcpp RcppArmadillo]; }; + unpivotr = derive2 { name="unpivotr"; version="0.6.1"; sha256="1xh1m6f8gr37r14kbhnmb5a5dfammd4x9ci7p782b6r9ymnjq13p"; depends=[cellranger dplyr forcats magrittr pillar purrr rlang tibble tidyr tidyselect xml2]; }; unrepx = derive2 { name="unrepx"; version="1.0"; sha256="1dzvwpza60y9p7kz1f0bm20wid5jyxx9pma4w41az9shq5kkr0aj"; depends=[]; }; unrtf = derive2 { name="unrtf"; version="1.4"; sha256="0ri68vfhc0acizjsk62v4l1g6l773y955yhcbqgks0vbrk01yfxg"; depends=[sys]; }; unsystation = derive2 { name="unsystation"; version="0.2.0"; sha256="02da7wzzk5bwd475i67v5x04ay2bn5yd5xffl1asqcqxcc5sy0m8"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; }; untb = derive2 { name="untb"; version="1.7-4"; sha256="1i7m4vfslsix98dwx4jlrsldm7fhhfp25gr7aapcxqxms7ryaby6"; depends=[Brobdingnag partitions polynom]; }; unvotes = derive2 { name="unvotes"; version="0.2.0"; sha256="0wanvivwm1nmqadq2vapg27kasnjnr0a4np2kw54wj9pg21izqic"; depends=[]; }; - updog = derive2 { name="updog"; version="1.2.0"; sha256="0q55h4rgr0hqn2fkcnd0pwmrawzcjmffvysps1cr061jd5yrzla4"; depends=[assertthat doParallel foreach ggplot2 ggthemes Rcpp RcppArmadillo reshape2 stringr]; }; + updog = derive2 { name="updog"; version="2.0.2"; sha256="0xyr4kckg185slwrq46j1qp6z0h965zk6yy55zw2h3wd3gm0cbwa"; depends=[assertthat doParallel foreach ggplot2 ggthemes Rcpp RcppArmadillo reshape2]; }; uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; }; uplifteval = derive2 { name="uplifteval"; version="0.1.0"; sha256="1gnn40c47rpx40j210bz6fb48d70p6spv3drr8hd5b3vzfz6686c"; depends=[dplyr ggplot2 gridExtra whisker]; }; + upsetjs = derive2 { name="upsetjs"; version="1.6.0"; sha256="0zmkp9md0pzdzq348m25y26z4yvsqkdb0vfz3246xqr5bvkmj1c0"; depends=[htmlwidgets magrittr]; }; uptasticsearch = derive2 { name="uptasticsearch"; version="0.4.0"; sha256="19sf3zdj424pz4ms0xg4asplf2bczvhl8p22y13jna1g51xyv92a"; depends=[assertthat data_table futile_logger httr jsonlite purrr stringr uuid]; }; uptimeRobot = derive2 { name="uptimeRobot"; version="1.0.0"; sha256="1sbr0vs6jqcyxjbs7q45bsfdnp3bc59phw0h3fwajqq1cxjgzdww"; depends=[plyr RCurl rjson]; }; uqr = derive2 { name="uqr"; version="1.0.0"; sha256="0f7isjfb5almp1zypxzw3lfkygkcixmg0xdsw0zznf61r6qhbqyr"; depends=[gtools Hmisc]; }; @@ -15063,15 +15635,18 @@ in with self; { urlshorteneR = derive2 { name="urlshorteneR"; version="1.1.2"; sha256="1gxyc9a81lsn72x7c29lz6k9k5ylqd0j65yhy2qj8lslnmg869vz"; depends=[assertthat httr jsonlite lubridate stringr]; }; urltools = derive2 { name="urltools"; version="1.7.3"; sha256="04x3my655dd287cbsszbnf75q0swmjlxxrblcsay7a8n3df3a830"; depends=[Rcpp triebeard]; }; uroot = derive2 { name="uroot"; version="2.1-0"; sha256="1hhq7ns2pyiziwx6sx7sb6445p3nynv7l04rksjngai2vpdaj0iw"; depends=[]; }; - ursa = derive2 { name="ursa"; version="3.8.19"; sha256="1q2y834nkh7mjq03xp8v3kxlwgk9gn558dk9lz78213qjx2762h8"; depends=[jpeg png rgdal]; }; + ursa = derive2 { name="ursa"; version="3.8.20"; sha256="1jsvmxk1jncyc480a2zbrhd6r8b3nkibsx474q7a9wbr09nq9mdi"; depends=[jpeg png rgdal]; }; + us_census_geoheader = derive2 { name="us.census.geoheader"; version="1.0.2"; sha256="17mss1ggaqkd0ac7g9chgqdrpi5xlbfkxsm1jvj48rp2jfwpp4jw"; depends=[tibble]; }; usa = derive2 { name="usa"; version="0.1.0"; sha256="0scdrd6b48n019f7qp77rrkqgmapnrknalq0hml1cy7m43llqf6d"; depends=[tibble]; }; + usdampr = derive2 { name="usdampr"; version="1.0.0"; sha256="1kz4yaxhzpbyw1vjgfs4cps2s13w2m6fa0k81q8j89a3xl36wzhw"; depends=[dplyr httr jsonlite tidyr]; }; usdarnass = derive2 { name="usdarnass"; version="0.1.0"; sha256="10fh9anpmbb7i70q3hjxbplrkqa1q86zgh8nldsf2i526p62hpm1"; depends=[httr jsonlite readr]; }; + usdata = derive2 { name="usdata"; version="0.1.0"; sha256="1qlk530biab63wk7v0f8pw80b4v3wsmlrw7k45n8gjh2a1r42xh7"; depends=[tibble]; }; usdm = derive2 { name="usdm"; version="1.1-18"; sha256="1sis47fri2lrbx2ll5ps7bvycjqhncnia800izf11szgayim5lrv"; depends=[raster sp]; }; usedist = derive2 { name="usedist"; version="0.4.0"; sha256="0ddf1zcalbrn293qmr9kdzz3x16fzc4k1bwb1pjmwnspisqfi8kj"; depends=[]; }; useful = derive2 { name="useful"; version="1.2.6"; sha256="0n50v1q75k518sq23id14jphwla35q4sasahrnrnllwrachl67v1"; depends=[assertthat dplyr ggplot2 magrittr Matrix plyr purrr scales]; }; - usefun = derive2 { name="usefun"; version="0.4.5"; sha256="11cvsx5rip4r7mcv3n711vylh0lzh3d6lnlcdjvfsg1sa1dbspp8"; depends=[dplyr]; }; + usefun = derive2 { name="usefun"; version="0.4.7"; sha256="0rklz4cdwgymis5ijlx9gzz01b9a35cg74clz42y1kbb86d8rcq4"; depends=[dplyr]; }; userfriendlyscience = derive2 { name="userfriendlyscience"; version="0.7.2"; sha256="17arxxha8qr876nrf9szpymgamxlvacj3lfbmpiv973kyi3hr7m4"; depends=[BiasedUrn car data_tree DiagrammeR digest diptest GGally ggplot2 ggrepel ggridges GPArotation gridExtra gtable knitr lavaan lme4 MASS MBESS minpack_lm pander plyr psych pwr RColorBrewer rio scales SCRT SuppDists ufs viridis XML xtable]; }; - usethis = derive2 { name="usethis"; version="1.6.0"; sha256="12iyimqyza752anj29wpfisl8nz5r25kfcqbssybg24nb4wyy146"; depends=[cli clipr crayon curl desc fs gh git2r glue purrr rematch2 rlang rprojroot rstudioapi whisker withr yaml]; }; + usethis = derive2 { name="usethis"; version="1.6.1"; sha256="0vwxsnq615mwc706a4a71gyy0hmvnllbh249gzm7vl3ym5cr0cv0"; depends=[cli clipr crayon curl desc fs gh git2r glue purrr rematch2 rlang rprojroot rstudioapi whisker withr yaml]; }; usfertilizer = derive2 { name="usfertilizer"; version="0.1.5"; sha256="05zjn39hqjjzzp4v4b1zbqq59205s7k0kikms951h57kbyvjz6vk"; depends=[tidyverse]; }; ushr = derive2 { name="ushr"; version="0.2.3"; sha256="1ygyqgxw849165lpk81f114kgx9015b9a9dngavjy3ffqzrbb41k"; depends=[dplyr ggplot2 tidyr]; }; uskewFactors = derive2 { name="uskewFactors"; version="2.0"; sha256="0ndi5987ak8sa7krgiglsibfg0k7z9j8fg47hg1m8ar0sq4r1yj6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; }; @@ -15080,72 +15655,71 @@ in with self; { ustyc = derive2 { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; }; utc = derive2 { name="utc"; version="0.1.5"; sha256="1lhm5rhr78cxp3cz5n6j2zkhjphj7csk026xvvhkjqdi39rrq6i4"; depends=[]; }; utf8 = derive2 { name="utf8"; version="1.1.4"; sha256="0m0ywg8k3blfiahxvh1i4zn9dksrlc937d2lbza5fc38zjnrrnpn"; depends=[]; }; - utile_tables = derive2 { name="utile.tables"; version="0.1.8"; sha256="0zxy5y8d34lssg5jr7hzqkwf92k3yy52p1qjd505zrp90sgz9cjj"; depends=[dplyr purrr rlang survival tibble utile_tools]; }; - utile_tools = derive2 { name="utile.tools"; version="0.2.4"; sha256="1k82wra9c6f8m58sk1m33fv0gqjnxnv5wal8rjx6knnvfl36kjvn"; depends=[dplyr lubridate purrr rlang stringr tibble]; }; - utile_visuals = derive2 { name="utile.visuals"; version="0.2.3"; sha256="1748nbj2vzigw0q97z9c6pgxa9x8h9rllh8asaahdybachwal7kh"; depends=[dplyr ggplot2 gridExtra purrr utile_tools]; }; + utile_tables = derive2 { name="utile.tables"; version="0.2.1"; sha256="0bj3rg4f9dby7qzf0m95dg626ws4nz5v2vn3m50x8g3pqq8m7lmp"; depends=[dplyr purrr rlang tidyselect utile_tools]; }; + utile_tools = derive2 { name="utile.tools"; version="0.2.6"; sha256="1l3l6x37290ism459kjfbgm2s0w7sa84q93nzrij1z250gv6g0rp"; depends=[lubridate purrr vctrs]; }; + utile_visuals = derive2 { name="utile.visuals"; version="0.2.5"; sha256="0rj0pbpnsalhb89rqr0k4lxkxa159h7vaarvpp1pb8vmcf8vrdjh"; depends=[dplyr ggplot2 gridExtra purrr]; }; utility = derive2 { name="utility"; version="1.4.5"; sha256="0a11bxyg8la6yvxr04qbhay05jb2ihd7calc1zcisgj43kq6k7xd"; depends=[]; }; + utilityFunctionTools = derive2 { name="utilityFunctionTools"; version="0.1.0"; sha256="1xi1dgjijnm84c8pk8d4ag5bzsxxdzrwkbzj7v5nwwmx47fn3cby"; depends=[spatstat]; }; utilsIPEA = derive2 { name="utilsIPEA"; version="0.0.6"; sha256="07avc0j6qkzqmznbydn0zdg743g7g7kn2bcx5n03m3wg0fqyggr7"; depends=[data_table dplyr RCurl stringdist stringr]; }; utiml = derive2 { name="utiml"; version="0.1.6"; sha256="1djagxmsni685ps0nhbvwgncxj883qck0wfcwhrl5h714zq39a0j"; depends=[mldr ROCR]; }; uuid = derive2 { name="uuid"; version="0.1-4"; sha256="0gm9ii7ncvllxbvyk6srsiinjmqyj7lmh84w43x4nhqpvafj9q4q"; depends=[]; }; uwot = derive2 { name="uwot"; version="0.1.8"; sha256="1jzh8r1h6f7pw7pb1fr32vn6ai9g10s56ahkq0vi77iznihy1rpd"; depends=[dqrng FNN irlba Matrix Rcpp RcppAnnoy RcppProgress RSpectra]; }; - vader = derive2 { name="vader"; version="0.0.1"; sha256="0zcggr7hpkx43bjrhyq6b3rgd6nmyljd5i8vky2jz6xn44gykhmw"; depends=[tm]; }; + vader = derive2 { name="vader"; version="0.1.1"; sha256="1fpz4mz5jvb46vfm3zaqrgxpi7r95wcmjlimm8zfqrblcmbva84r"; depends=[tm]; }; vaersNDvax = derive2 { name="vaersNDvax"; version="1.0.4"; sha256="0hvw7vbxs87c9xkdv3617fkjwz2dbawscbd7dgaixhdhcr3k823a"; depends=[]; }; vaersvax = derive2 { name="vaersvax"; version="1.0.5"; sha256="0bfbpdjnykvb9r0p28bz8lrqxksy4jvwnd28y6gdlprpisiipiic"; depends=[]; }; vagalumeR = derive2 { name="vagalumeR"; version="0.1.6"; sha256="0zakpg5p9kif61d35as08f2dac3wncyvhpc83rqjp96g99wjf701"; depends=[dplyr httr jsonlite magrittr purrr stringr]; }; vagam = derive2 { name="vagam"; version="1.1"; sha256="1bgpf0z23yqyaz7dfmqilyqvr5v4w891027xrlr0mk9grj4srmiq"; depends=[gamm4 Matrix mgcv mvtnorm truncnorm]; }; valaddin = derive2 { name="valaddin"; version="1.0.0"; sha256="0dws2mcjpyw0jn0h6badhlnxg88c6mgzvcp2fjjrpr5mpcgps1c8"; depends=[lazyeval]; }; valection = derive2 { name="valection"; version="1.0.0"; sha256="0104zcg3cw57ksgmb321hnyv095mn3frxci9vikj1smwarpnrpzc"; depends=[testthat]; }; - valetr = derive2 { name="valetr"; version="0.1.0"; sha256="0lwdqx3wn8dn5cxypnmhwr8py461iyccgq437az0209akc72a7z4"; depends=[curl jsonlite]; }; validann = derive2 { name="validann"; version="1.2.1"; sha256="00c0hkjiv8n7mksx6sknb4xkkivxr1ml31k697csv4imwrk09dy5"; depends=[moments]; }; validate = derive2 { name="validate"; version="0.9.3"; sha256="0ckr4i75w503jxwghkmc7mi9b9z54gjipxl6limz4sry0py3lyl4"; depends=[settings yaml]; }; validateRS = derive2 { name="validateRS"; version="1.0.0"; sha256="1ivw9ddr6z2wrsqvhbn87p5pikhkxlz8p45pb5nq13dvs359vkww"; depends=[data_table reshape2 triangle truncnorm]; }; validatetools = derive2 { name="validatetools"; version="0.5.0"; sha256="10wardp2c70zx5ii940sjql3xh5p3vqxv4ayyifhhlr8vzvr5cj0"; depends=[lpSolveAPI validate]; }; valorate = derive2 { name="valorate"; version="1.0-1"; sha256="06vczszpkipsxfs7h6ld33vvxb5ci62rwg3cglwy3lcfifhbnsfi"; depends=[survival]; }; valottery = derive2 { name="valottery"; version="0.0.1"; sha256="0rlv8agm9ng4jcb9ixqifh7kjczvkx7047brq8yf9kg7rb8mzgpz"; depends=[]; }; - valr = derive2 { name="valr"; version="0.5.0"; sha256="14jhrwkiwmha3vlmm7b50n2xxyizj6ddmy89gb20mpzq7qhz1ika"; depends=[broom dplyr ggplot2 Rcpp readr rlang stringr tibble]; }; - valueEQ5D = derive2 { name="valueEQ5D"; version="0.5.1"; sha256="0njarifqj7mfnc5bqaq7zpx0z7sx9rmz88755s7426dyypx8v0lv"; depends=[rstudioapi testthat]; }; + valr = derive2 { name="valr"; version="0.6.1"; sha256="1qxw6h63i2vfb2w6q453zzwk0ypma3xdwwpj15i06669vzgyy3bb"; depends=[broom dplyr ggplot2 Rcpp readr rlang stringr tibble]; }; + valueEQ5D = derive2 { name="valueEQ5D"; version="0.5.2"; sha256="0k5jjia24xf9fpj6mfp9a1kh8lp9frqw6fp87wiixrxp0ggp088m"; depends=[rstudioapi testthat]; }; valuer = derive2 { name="valuer"; version="1.1.2"; sha256="0mbwzsvy34ppngyxdzpd9w1r4f00cik4maqab9kpiflrrv9xdp78"; depends=[ggplot2 orthopolynom R6 Rcpp RcppEigen timeDate yuima]; }; vamc = derive2 { name="vamc"; version="0.2.1"; sha256="04kkli4xzf3gzvs215lzch8bl877cdq3awh3mz1k321zhsa1d0jn"; depends=[Rdpack]; }; vampyr = derive2 { name="vampyr"; version="1.0.6"; sha256="1iqlb948wvwxf69588qz0hmc1fsmbqp058qbvrzx817w3mhjcs63"; depends=[corpcor EFA_MRFA fungible GPArotation lavaan moments optimbase PCovR psych semPlot]; }; vanddraabe = derive2 { name="vanddraabe"; version="1.1.1"; sha256="094kd72slq0n3pk0p6zps241aszb9yql49h4mr007zf0kn8wlf8v"; depends=[bio3d cowplot fastcluster ggplot2 openxlsx reshape2 scales]; }; vanquish = derive2 { name="vanquish"; version="1.0.0"; sha256="01di1j36npl7vnyhgsagvyf6j8bxcw867dwf9dgi7l1328s7lf0l"; depends=[changepoint e1071 ggplot2 VGAM]; }; - vapour = derive2 { name="vapour"; version="0.5.0"; sha256="06rjqvriz64f7w5b5xwn3n5xk27l3p2l1sgipzjkk04gs24m6nfh"; depends=[Rcpp]; }; + vapour = derive2 { name="vapour"; version="0.5.5"; sha256="0mcwb6dqiwqf55gsjmpzk9cb29axvwbs7gjgqlfv7xas3zlkh9zg"; depends=[Rcpp]; }; varEst = derive2 { name="varEst"; version="0.1.0"; sha256="0i6nsxl5w4zipzrmdvx8plmxr33n405w2qhks3s7zzs3kcys32v6"; depends=[caret glmnet lm_beta SAM]; }; - varImp = derive2 { name="varImp"; version="0.3"; sha256="08kqnqv29bmw2lqnsyffnbwr3a0f97mf593pkwzak6wy0mkqrm5z"; depends=[measures party]; }; + varImp = derive2 { name="varImp"; version="0.4"; sha256="1bxlfqxi8iiv6raawl9668yhlmbak96ahd0ljzwrilnciqbclc2b"; depends=[measures party]; }; varSel = derive2 { name="varSel"; version="0.1"; sha256="0ddj3swfxzchs75kfi6h25h3c33hpapnd5kcwcijnqhlh902b1r0"; depends=[]; }; varSelRF = derive2 { name="varSelRF"; version="0.7-8"; sha256="0h49rl1j13yfh97rsfsyh9s2c4wajny4rzms2qw77d0cavxqg53i"; depends=[randomForest]; }; - varTestnlme = derive2 { name="varTestnlme"; version="0.1.0"; sha256="1ny42d2s5f7nlgw3b6awiimhc7ppil9hbizb09qhgsrrp3zsn497"; depends=[alabama anocva corpcor doParallel foreach lme4 Matrix matrixcalc merDeriv msm mvtnorm nlme quadprog saemix]; }; + varTestnlme = derive2 { name="varTestnlme"; version="0.2.0"; sha256="0b9ygl2zfs3dl4bvzcrqd1ja08jy6bqr57ajjx3y83di6q7cb78l"; depends=[alabama anocva corpcor doParallel foreach lme4 lmeresampler Matrix matrixcalc merDeriv msm mvtnorm nlme quadprog saemix]; }; varband = derive2 { name="varband"; version="0.9.0"; sha256="16z66rx7xq5zan8pnw100c9r5syw1ml4hgzi9mch52aia23v21p9"; depends=[Rcpp RcppArmadillo]; }; varbin = derive2 { name="varbin"; version="0.2.1"; sha256="0gcynwc0vx7qlp3z0pcc4i7mjlnxkwy8ydxz2wr244fw32qgp4kq"; depends=[rpart]; }; varbvs = derive2 { name="varbvs"; version="2.5-16"; sha256="0pji7vqpbih01y7n0q6zpxhfszznzig4z3hmmpr4jqpdplv13x8d"; depends=[lattice latticeExtra Matrix nor1mix Rcpp]; }; varclust = derive2 { name="varclust"; version="0.9.4"; sha256="0knmfq3pn38j8p29j6sqapdv3g5335si3gwiw932ml5z49a8ga5m"; depends=[doParallel doRNG foreach pesel RcppEigen]; }; vardiag = derive2 { name="vardiag"; version="0.2-1"; sha256="07i0wv84sw035bpjil3cfw69fdgbcf2j8wq4k22narkrz83iyi2z"; depends=[]; }; - vardpoor = derive2 { name="vardpoor"; version="0.16.0"; sha256="09dy1q1lx3b53an7qdszqzl5r4aswddy3046cvz997k1f692mwda"; depends=[data_table foreach ggplot2 laeken MASS plyr pracma stringr surveyplanning]; }; + vardpoor = derive2 { name="vardpoor"; version="0.20.0"; sha256="0yrbgfcv2j05g60ywsx4p963vjnf87079x4714q35sx8sacy6f7g"; depends=[data_table foreach laeken MASS stringr surveyplanning]; }; varhandle = derive2 { name="varhandle"; version="2.0.5"; sha256="1l42d0s6fbjjc9l28a2m3myxkrx2c0p0b9yj8wjjjgilw19yc3lv"; depends=[]; }; variables = derive2 { name="variables"; version="1.0-3"; sha256="1x4w6pqrl6lw5dalii7kiq5f7jbfj1mlwdq2f6bvyfpx8byrvkqc"; depends=[]; }; varian = derive2 { name="varian"; version="0.2.2"; sha256="0jyw46qx2w19h02mrwv3w3n8qc1n4b3ckm38qly1y4a4w9ib6c2i"; depends=[Formula ggplot2 gridExtra MASS rstan]; }; variantspark = derive2 { name="variantspark"; version="0.1.1"; sha256="13hkp6l64hi7xlll09gin7kdlkqrkn0lggrw8147zy9ivhknhk59"; depends=[sparklyr]; }; variosig = derive2 { name="variosig"; version="0.3-1"; sha256="09cxigii0sj78yqd18p4mm9jjqvd1k2cgjy43pxpmqdhia0q2pmv"; depends=[gstat sp testthat]; }; - varitas = derive2 { name="varitas"; version="0.0.1"; sha256="1xndg2hj4g3c7r4pzvjg7phrr1absa4xkpjc7gqfq45ymb3kadxz"; depends=[assertthat doParallel dplyr foreach magrittr openxlsx stringr tidyr VennDiagram yaml]; }; varjmcm = derive2 { name="varjmcm"; version="0.1.1"; sha256="1xgy3n57pxhv6wrsw9h4dranxbw6hdpm1f9ra3kwlzrpz5c3289x"; depends=[expm jmcm MASS Matrix]; }; varrank = derive2 { name="varrank"; version="0.3"; sha256="0k7hz61ymxf7w2hh1v2yfb6qdjn68a8ckjfiw0jqqhjx4wh5crn7"; depends=[FNN]; }; vars = derive2 { name="vars"; version="1.5-3"; sha256="0zc6v827ll19n088n31afgjf65zqwvyzmmj4q3ab1xhqzxfsgbw6"; depends=[lmtest MASS sandwich strucchange urca]; }; - varsExplore = derive2 { name="varsExplore"; version="0.1.0"; sha256="1sscz565i288nmk7sv03kj2xysfppvil4nl2lxxbvp3y4mrkz09b"; depends=[dplyr DT glue magrittr purrr rio rstudioapi stringr tidyr]; }; - varycoef = derive2 { name="varycoef"; version="0.2.11"; sha256="13ccgc5dyac8224kpl5f1n6yw77m2f32amcr0h2c0z74sjwcxn54"; depends=[fields optimParallel RandomFields sp spam]; }; + varsExplore = derive2 { name="varsExplore"; version="0.3.0"; sha256="0d18wqq7fbs5ljdphsdgqmv8ab0wrzzykjhf4lqksi7n78s1fa2r"; depends=[dplyr DT glue magrittr purrr rio rstudioapi stringr tidyr]; }; + varycoef = derive2 { name="varycoef"; version="0.2.12"; sha256="16wadla399zjbl8khvvwm60mrg6b0wixlmq6hanvyvaarw4zwa8d"; depends=[optimParallel RandomFields sp spam]; }; vaultr = derive2 { name="vaultr"; version="1.0.2"; sha256="1b7g0jplp5dw1img7d6wm75gaycb3z8a8mzc6s0iwvhbfl8vf574"; depends=[getPass httr jsonlite R6]; }; vbdm = derive2 { name="vbdm"; version="0.0.4"; sha256="1rbff0whhbfcf6q5wpr3ws1n4n2kcr79yifcni12vxg69a3v6dd3"; depends=[]; }; vbsr = derive2 { name="vbsr"; version="0.0.5"; sha256="1avskbxxyinjjdga4rnghcfvd4sypv4m39ysfaij5avvmi89bx3b"; depends=[]; }; vcd = derive2 { name="vcd"; version="1.4-7"; sha256="16aj688nhlcvdxzfsqh4s375v8f8vl8997dl8h1xg29b42nv52gc"; depends=[colorspace lmtest MASS]; }; vcdExtra = derive2 { name="vcdExtra"; version="0.7-1"; sha256="163x9hhvhgdmrqbcig7b120lk63svy0y652scbrcb11f85zrgb0c"; depends=[ca gnm MASS vcd]; }; - vcfR = derive2 { name="vcfR"; version="1.10.0"; sha256="13dfg42c7z0129difxd7phw8gbnck8gq4xd218r626wq7jrch6cy"; depends=[ape dplyr magrittr memuse pinfsc50 Rcpp stringr tibble vegan viridisLite]; }; vcov = derive2 { name="vcov"; version="0.0.1"; sha256="1w89mr8dk6436bxap28rszajgm9k7sjfqsr1i4p68dlhw8zk4yq1"; depends=[]; }; + vcpen = derive2 { name="vcpen"; version="1.7"; sha256="10z3zcz1g0csjdp072r48rkn4c9hpnb341xdljv5038z2nbx18fy"; depends=[knitr Rcpp RcppArmadillo]; }; vcr = derive2 { name="vcr"; version="0.5.4"; sha256="1wilihibpvy9pvf50wi9r5sh1lfdz9ddfxxslcl3lz7g2b0hyxkv"; depends=[base64enc crul httr lazyeval R6 urltools webmockr yaml]; }; vcrpart = derive2 { name="vcrpart"; version="1.0-3"; sha256="10898qp3sh2cjcfz4ac2q98f3z2wmwd3zvhhcdlxw7xy5a1x8gib"; depends=[formula_tools nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; }; - vctrs = derive2 { name="vctrs"; version="0.2.4"; sha256="15sgzs6afvmhssk6jcg41rn3bvmzmbm4sgca6f6x8lfrsazvdj6w"; depends=[digest ellipsis glue rlang]; }; + vctrs = derive2 { name="vctrs"; version="0.3.2"; sha256="05s8v3ms4jaim44c7m4y0dnv8mysj9b26cdfyrfgcjpllayrjib2"; depends=[digest ellipsis glue rlang]; }; vcvComp = derive2 { name="vcvComp"; version="1.0.1"; sha256="1103hjzd29f8gpsfbagdryq52m6fkhhh9dbqhbmhixxlimc7sd03"; depends=[]; }; - vdar = derive2 { name="vdar"; version="0.1.2-1"; sha256="1ia3211ah4m2dapdldgpvphk6zjfmx550dn9zz7im5v46b9dk9a0"; depends=[compositions]; }; + vdar = derive2 { name="vdar"; version="0.1.3"; sha256="1nji97rcxp4v8pypx3z1265v85rb0yhw47i9cvacqmfxwk3hgpxj"; depends=[compositions]; }; vdg = derive2 { name="vdg"; version="1.2.0"; sha256="1hi5d14nh9q784sbdk018awrawh9f1aix0wl26x7n0xb4707rcmy"; depends=[ggplot2 gridExtra proxy quantreg]; }; - vdiffr = derive2 { name="vdiffr"; version="0.3.1"; sha256="1l0vzh7nnwr64cq0nixnr4m0iya4mdpqvh45g2wf1hja51mcvw0a"; depends=[BH devtools diffobj fontquiver freetypeharfbuzz gdtools glue htmltools htmlwidgets purrr R6 Rcpp rlang shiny testthat usethis xml2]; }; + vdiffr = derive2 { name="vdiffr"; version="0.3.2.2"; sha256="0yz6dcbvhh9n87b4a3nm085hf2xa4dqnch7liq5468dgldzjmg53"; depends=[BH devtools diffobj fontquiver freetypeharfbuzz gdtools glue htmltools htmlwidgets purrr R6 Rcpp rlang shiny testthat usethis xml2]; }; vec2dtransf = derive2 { name="vec2dtransf"; version="1.1"; sha256="029xynay9f9rn0syphh2rhd3szv50ib4r0h0xfhhvbbb37h5dc9s"; depends=[sp]; }; veccompare = derive2 { name="veccompare"; version="0.1.0"; sha256="03nyyxvhhwfxxg5w6qflk7q234ipbhj9fd4abcp50sxz3diabch1"; depends=[corrplot gtools pander purrr qgraph reshape2 VennDiagram]; }; vecsets = derive2 { name="vecsets"; version="1.2.1"; sha256="086af6swjpbkd140yvb76affy5gn4p9xm41m3akm8axc3qk0hybg"; depends=[]; }; @@ -15155,14 +15729,15 @@ in with self; { vegan3d = derive2 { name="vegan3d"; version="1.1-2"; sha256="01yyhrapdvs6rr5hw1ij4jnpz7mq005s35pn96snpy8ngn6ir386"; depends=[cluster rgl scatterplot3d vegan]; }; vegawidget = derive2 { name="vegawidget"; version="0.3.1"; sha256="154k5n3vg1fdjx6mbrlxvi9h17h651aqwr12wiknwmw0ikhcrnh0"; depends=[assertthat glue htmltools htmlwidgets jsonlite magrittr rlang]; }; vegclust = derive2 { name="vegclust"; version="1.7.7"; sha256="0f81jw429ib601lvbzi4q23kb5n6lvavlgw56wfqdmvvkl68vwlc"; depends=[circular Kendall MASS Rcpp sp vegan]; }; - vegdata = derive2 { name="vegdata"; version="0.9.7"; sha256="1cfb993p8sgm08g5859v4q9mil3a64yzhx3hzddvp536pq7jsc86"; depends=[foreign plyr xml2]; }; + vegdata = derive2 { name="vegdata"; version="0.9.8"; sha256="05sgmas7hlhxx2j95b4r5y2m6hhxa2cswy80bhs8lmjmy3yqyig6"; depends=[foreign plyr xml2]; }; vegetarian = derive2 { name="vegetarian"; version="1.2"; sha256="15ys1m8p3067dfsjwz6ds837n6rqd19my23yj8vw78xli3qmn445"; depends=[]; }; - vegperiod = derive2 { name="vegperiod"; version="0.2.6"; sha256="0v8bpxaa0xp8ywnycxs3613scncrhv8g7p99j6n5hs26m4h1km49"; depends=[]; }; - vegtable = derive2 { name="vegtable"; version="0.1.5"; sha256="04q1dl4p12r4a05nhrlpzy4f5jw6i49ydaq5xrd84x1n6cc5qar9"; depends=[foreign plotKML qdapRegex sp stringi taxlist vegdata]; }; - vein = derive2 { name="vein"; version="0.8.8"; sha256="1d1aszmfz0g6vd80v1rf0lh7v84g0kh9g86jns7ryjjfqn13yl9y"; depends=[data_table sf units]; }; + vegperiod = derive2 { name="vegperiod"; version="0.2.7"; sha256="0gvfgxg5dfx20h5fqvxxxk12imyn52p6p51wvkvbjnh7fwf7il7k"; depends=[]; }; + vegtable = derive2 { name="vegtable"; version="0.1.6"; sha256="04bil2v9krylnak9vbl4fahv75ca695a4sb4y82f99qlylzbdqm0"; depends=[foreign plotKML qdapRegex sp stringi taxlist vegdata]; }; + vein = derive2 { name="vein"; version="0.8.9"; sha256="1rrv4rayrx3y2y37mlacl9q3b63wbcnak3m7sbasp6bpjxhg57ag"; depends=[data_table sf units]; }; velociraptr = derive2 { name="velociraptr"; version="1.1.0"; sha256="0a67vmv05cxc9f27aqzr6nkgy2mj3fhykwj5nb23qwfqa669a5hi"; depends=[sf]; }; vembedr = derive2 { name="vembedr"; version="0.1.3"; sha256="0zg6j0g9l7j36ifwabhxrin5z0dics66bqkc7x6rqijmizk1xpba"; depends=[htmltools httr magrittr stringr]; }; venn = derive2 { name="venn"; version="1.9"; sha256="0d2vwjc932q8n9hww8krj7nixg1dfkmcw1k1cry2d0xdvbbnrj8r"; depends=[admisc]; }; + vennLasso = derive2 { name="vennLasso"; version="0.1.6"; sha256="0maydvx0qhdn5alqzqxjn485y9hw9qdr1xvgkmgwnjq59vni6d31"; depends=[foreach igraph MASS Matrix Rcpp RcppEigen RcppNumerical survival VennDiagram visNetwork]; }; venneuler = derive2 { name="venneuler"; version="1.1-0"; sha256="10fviqv9vr7zkmqm6iy2l9bjxglf2ljb7sx423vi4s9vffcxjp17"; depends=[rJava]; }; vennplot = derive2 { name="vennplot"; version="1.0"; sha256="0x59awa1zsjwk5qb1jzv6d2mn2fm4aq1lq8zlbnf1da0h4837yab"; depends=[Rcpp rgl stringr]; }; verification = derive2 { name="verification"; version="1.42"; sha256="0pdqvg7cm9gam49lhc2xy42w788hh2zd06apydc95q2gj95xnaiw"; depends=[boot CircStats dtw fields MASS]; }; @@ -15170,7 +15745,7 @@ in with self; { vertexenum = derive2 { name="vertexenum"; version="1.0.2"; sha256="16ywz3z1kzhb3knhhi2i5igm3djdaaxyyrw69wkc5saa7ayhdb4y"; depends=[numbers]; }; vesselr = derive2 { name="vesselr"; version="0.2.1"; sha256="1wzprnpiv04gxhqgki36gp1a0xj9l3mchllphwkfsdja4axq3prk"; depends=[oro_nifti pbapply pbmcapply]; }; vetools = derive2 { name="vetools"; version="1.3-28"; sha256="1470xgqdq9n5kj86gdfds15k3vqidk3h99zi3g76hhyfl8gyl1c0"; depends=[lubridate maptools plyr scales sp stringr tis xts]; }; - vetr = derive2 { name="vetr"; version="0.2.9"; sha256="1dqlv1ks3bfqz6hrl3q913i7sbf9430ix5pjjyl7db0452lhny3a"; depends=[]; }; + vetr = derive2 { name="vetr"; version="0.2.10"; sha256="0zfnfi29gkgy1yvwz1zdszxbb7mc5yrzqcic1s7wr76d67mdqzh3"; depends=[]; }; vfcp = derive2 { name="vfcp"; version="1.4.0"; sha256="0zj1ihqdx5x1695al1xyi8k001yw8x7gdss72myxlnh7b4flnp9m"; depends=[copula extraDistr stringr]; }; vfprogression = derive2 { name="vfprogression"; version="0.7.1"; sha256="0kgw1jx0rl9v8qy8qg7zjzdgvwqdi7k1lsvsx3lnpw4sfpkzsq23"; depends=[]; }; vhcub = derive2 { name="vhcub"; version="1.0.0"; sha256="04a8hdm4pxl8fzwy9q2wqc9q0dl5r49xwbid70yj9qlflh683id0"; depends=[Biostrings coRdon ggplot2 seqinr stringr]; }; @@ -15178,13 +15753,13 @@ in with self; { viafr = derive2 { name="viafr"; version="0.2.0"; sha256="08hvylrv4c8p5vazalagbkv3vhqmr9halbxkf05kfn74ssw8lljz"; depends=[assertthat crul dplyr jsonlite magrittr purrr rlang stringr tibble tidyr utf8]; }; vici = derive2 { name="vici"; version="0.5.2"; sha256="0qad8ab04ndd29kcmd388piiymablfc7xlv6iml4sxkid7z5kgby"; depends=[cowplot DT ggplot2 ggpubr nlme shiny tidyr]; }; vietnamcode = derive2 { name="vietnamcode"; version="0.1.1"; sha256="0vc0c1fg30afar2dkch5h27b8jbglcd9ja6d5hcypnibqz4c68vz"; depends=[]; }; - viewshed3d = derive2 { name="viewshed3d"; version="3.0.0"; sha256="0yx271xx4nfxjlvrg0c5x77n6zcahmj9kvz6qpzdg3ysg4ydyika"; depends=[data_table lidR nabor pracma raster rgl sp TreeLS viridis]; }; - vimp = derive2 { name="vimp"; version="2.0.1"; sha256="0bwc4rdzdqvmhshk4l8d9x76fvd5f7g2jja182lsiz28v1jh8ga3"; depends=[dplyr magrittr rlang ROCR SuperLearner tibble]; }; + viewshed3d = derive2 { name="viewshed3d"; version="3.2.0"; sha256="1qs597wivvzkdlls9r2hm6rprm3ssvk81my2nj7acczdh07fxmsv"; depends=[data_table lidR nabor pracma raster rgl sp viridis]; }; + vimp = derive2 { name="vimp"; version="2.1.0"; sha256="16dhvr1vcm5yca8rsscivdnk9yv9nhhfi1nbkal4gf3dy46anzb5"; depends=[dplyr magrittr MASS rlang ROCR SuperLearner tibble]; }; vinereg = derive2 { name="vinereg"; version="0.7.0"; sha256="1fviqzs879n7rin3b0jks8dfvcxiay8jssqy7salslghpj7rkm84"; depends=[assertthat BH kde1d Rcpp RcppEigen RcppThread rvinecopulib wdm]; }; vines = derive2 { name="vines"; version="1.1.5"; sha256="057d2fdh03cq9kh4vz94arqscahmz14xbr2g59l0vn205lnyilf1"; depends=[ADGofTest copula cubature TSP]; }; violinmplot = derive2 { name="violinmplot"; version="0.2.1"; sha256="1j3hb03y988xa704kp25v1z1pmpxw5k1502zfqjaf8cy4lr3kzsc"; depends=[lattice]; }; violinplotter = derive2 { name="violinplotter"; version="1.0.1"; sha256="16kcz99w9avx99y5cnc5rn3dx367v1fmc8mlavjvfp8sy7m9x3lp"; depends=[]; }; - vioplot = derive2 { name="vioplot"; version="0.3.4"; sha256="1fsklymilspzz5fzlj7666x09aglaw0v4x0yfjjzy4vr5qpjc529"; depends=[sm zoo]; }; + vioplot = derive2 { name="vioplot"; version="0.3.5"; sha256="0aiy615kn9lpr2cs757g3pklg81n01yhqh0wrwv111fn3cy86r0v"; depends=[sm zoo]; }; viopoints = derive2 { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; }; vip = derive2 { name="vip"; version="0.2.2"; sha256="14wvadkpzismszqc4qi15jaky1qlf1l4g33cbvpnzdqxmhi61x4g"; depends=[ggplot2 gridExtra magrittr plyr tibble]; }; vipor = derive2 { name="vipor"; version="0.4.5"; sha256="112gc0d7f8iavgf56pnzfxb7hy75yhd0zlyjzshdcfbnqcd2a6bx"; depends=[]; }; @@ -15199,47 +15774,50 @@ in with self; { visTree = derive2 { name="visTree"; version="0.8.1"; sha256="1l07zfr2hagjpdxfw5290wa3ki4bl7iqxrrhda0d1bp3wmwfz0ai"; depends=[colorspace partykit rpart]; }; visdat = derive2 { name="visdat"; version="0.5.3"; sha256="1ikqp29nncbw1xlwyb9dqqgcdk9q0bs3wxhnhnjpb11vcjv7cz2j"; depends=[dplyr ggplot2 glue magrittr purrr readr tibble tidyr]; }; visit = derive2 { name="visit"; version="2.1"; sha256="0kkspih7m18g5pqlwrxpgjdwqxpp23c3xyvcnvv247abl9aq81rd"; depends=[BH Rcpp RcppEigen rstan sqldf StanHeaders]; }; - visreg = derive2 { name="visreg"; version="2.6.1"; sha256="01k44nxxilz7yrw5rihsg4r49yqjmz4zxmafcq89zbygap1d68ay"; depends=[lattice]; }; - vistime = derive2 { name="vistime"; version="1.0.0"; sha256="0114qgfq5ns02sgxh81cf68jx7pk74na9g10f23d6lm8jxcwdsrz"; depends=[assertive ggplot2 plotly RColorBrewer]; }; + visreg = derive2 { name="visreg"; version="2.7.0"; sha256="070yhyxxh3w16i54k790n47bgcjn4b10b6g1z553x6afjc3l3a6d"; depends=[lattice]; }; + vistime = derive2 { name="vistime"; version="1.1.0"; sha256="10jjszdl3wqw7hmsrbdqj2pvn2jjczla8i8985j8aw346nrrzpaw"; depends=[assertthat ggplot2 ggrepel highcharter plotly RColorBrewer]; }; vistributions = derive2 { name="vistributions"; version="0.1.1"; sha256="1s68dpcy55v6yw7ivh2xpshz6qc0qaifjd15h7rjg3zl1cx81mh3"; depends=[ggplot2 magrittr shiny]; }; visualFields = derive2 { name="visualFields"; version="0.6"; sha256="1w6wkyzjakj6ss9nv4gzkgva4m21jbsz10c2jy660bjb25rf59ih"; depends=[deldir flip gtools Hmisc matrixStats spatstat]; }; visualize = derive2 { name="visualize"; version="4.4.0"; sha256="1k3jpvj1yysxc4g1a1w3m1y91104aqxqv8jh9qdd23gwy7a29525"; depends=[]; }; - visvow = derive2 { name="visvow"; version="0.8.0"; sha256="1h88sbsdwbf7cpy4y6glhqla9rhi8sbzi3lxxza7yaawhg567pp9"; depends=[Cairo DT ggdendro ggplot2 ggrepel MASS plot3D plyr pracma psych Rdpack readxl Rtsne shiny shinyBS splitstackshape svglite WriteXLS]; }; + visvow = derive2 { name="visvow"; version="0.9.0"; sha256="0vpigwjk11z5zg2vlajyddmg9dv31qhnihldb2d0xji0mba8s2sm"; depends=[Cairo DT formattable ggdendro ggplot2 ggrepel MASS PBSmapping plot3D plyr pracma psych Rdpack readxl Rtsne shiny shinyBS splitstackshape svglite tidyr WriteXLS]; }; vita = derive2 { name="vita"; version="1.0.0"; sha256="114p2lzcr8rn68f0z4kmjdnragqlmi18axda9ma4sbqh8mrmjs9v"; depends=[randomForest Rcpp]; }; - vitae = derive2 { name="vitae"; version="0.2.1"; sha256="053dy7c5zlrdb3hcbbdndx61ahkd2xwgl0i3ivcxwladyrkksyz3"; depends=[bookdown dplyr glue knitr RefManageR rlang rmarkdown xfun]; }; + vitae = derive2 { name="vitae"; version="0.2.2"; sha256="1flcrwww47w02rcaw7h1wi9dmdnvcw3zsiyvqp5mz9qz7ks3r0vx"; depends=[bookdown dplyr glue knitr RefManageR rlang rmarkdown xfun]; }; vitality = derive2 { name="vitality"; version="1.3"; sha256="17micfmlksnw167vavvhlk431fm20k74y5ggs47pgz5fwpm854zp"; depends=[]; }; - vivo = derive2 { name="vivo"; version="0.1.2"; sha256="1wd38vkb0qw8hcv9x4vsb0dg0dbqcnzfgpdzzanfbsn9hg1gswd7"; depends=[DALEX dplyr ggplot2 ingredients]; }; + vivo = derive2 { name="vivo"; version="0.2.0"; sha256="1633ffq3hf1jnzmyfzz9ww65f9394688rw69n33sk1hbmvnh9l2j"; depends=[DALEX ggplot2 ingredients]; }; + vizdraws = derive2 { name="vizdraws"; version="1.0.0"; sha256="0d97xmpz06h1g3rmnpamwnisyi5jrxa35r19i9z0glqxhla9l2d2"; depends=[dplyr glue htmlwidgets magrittr stringr tidyr]; }; vkR = derive2 { name="vkR"; version="0.1"; sha256="0rb66am3y009wli8ykl58i02kzm6cdqz5v5d4vvzlbngz8crdkyy"; depends=[httr jsonlite XML]; }; vlad = derive2 { name="vlad"; version="0.2.0"; sha256="0bq91n51f9cnvbqskk0vg6xn559z3a33csbvyhvcvhyjcws2yahp"; depends=[Rcpp RcppArmadillo]; }; + vlda = derive2 { name="vlda"; version="1.1.5"; sha256="17xn8qqh043dm05ib3h4l1qx07wxncf5d06x9l1wl6jbkvnsm2nq"; depends=[dplyr ggiraph ggplot2 ggrepel ggsci]; }; vmd = derive2 { name="vmd"; version="0.1.0"; sha256="17c06a9l6i90ivpvf3rgv6yrsqv36qmywmmy92y5b81zqhgmh907"; depends=[ggplot2 magrittr R6 Rcpp reshape2 scales]; }; - vmsbase = derive2 { name="vmsbase"; version="2.2.0"; sha256="1hmgi63qwf7530pxl6w8cv74sjnngf83rb5hx7icjlqr1z6x2hms"; depends=[AMORE cairoDevice chron cluster DBI ecodist fields foreign ggmap ggplot2 gmt gsubfn gWidgets gWidgetsRGtk2 intervals mapdata maps maptools marmap outliers PBSmapping plotrix R6 RSQLite sp sqldf VennDiagram]; }; - vocaldia = derive2 { name="vocaldia"; version="0.8.2"; sha256="15314sq2gbi1z47ppvy8y3ljjk12jq4k5a1dfyi56h2lpzrc76ny"; depends=[]; }; - volesti = derive2 { name="volesti"; version="1.0.3"; sha256="099c49dy9iqrvmrmcm6h8af4q50q6b0ymnkk0s2bzaqczbpkwibj"; depends=[BH Rcpp RcppEigen]; }; + vmsbase = derive2 { name="vmsbase"; version="2.2.1"; sha256="1xxn0vm9r8kiix6whlc12r0wanf6acrl9a86h44nwm019xfmlfyp"; depends=[AMORE cairoDevice chron cluster DBI ecodist fields foreign ggmap ggplot2 gmt gsubfn gWidgets2 gWidgets2RGtk2 intervals mapdata maps maptools marmap outliers PBSmapping plotrix R6 RSQLite sp sqldf VennDiagram]; }; + vocaldia = derive2 { name="vocaldia"; version="0.8.3"; sha256="1r28f2bwkkxjjv3qysdvp5v9gjrd4rz8l1zqd80qjnj552viy86z"; depends=[]; }; + volcano3D = derive2 { name="volcano3D"; version="1.0.1"; sha256="1mk7fi72qp07wxffqkgn87r4ws3b3cy9xv52yds30q9h796l4f82"; depends=[ggplot2 ggpubr ggrepel plotly]; }; + volesti = derive2 { name="volesti"; version="1.1.1"; sha256="148b706licj0q7sai3xmyidr3f8mp68wm5kn10nclafjf4bcdxd8"; depends=[BH Rcpp RcppEigen]; }; volleystat = derive2 { name="volleystat"; version="0.2.0"; sha256="0n1r0bvvmba21cs3qgpnw9jxpgl2n82fhxa40sa1w2gav5rch5i6"; depends=[]; }; voronoiTreemap = derive2 { name="voronoiTreemap"; version="0.2.0"; sha256="1wvnqdrvba4ss4f3k8gzb720irdq2brv2aaq16ywifv8fnjf02r3"; depends=[data_tree DT htmlwidgets rlang shiny shinyjs]; }; vortexR = derive2 { name="vortexR"; version="1.1.7"; sha256="06i2rqbc3h2kv8jjrdlrg03xrzb3yiyzpnv2rvlkjcnn46f84bgf"; depends=[betareg data_table GGally ggplot2 glmulti gtools irr plyr R_utils stringr vortexRdata]; }; vortexRdata = derive2 { name="vortexRdata"; version="1.0.5"; sha256="0b47q3aslz4110a1bfaa103i098y2ngzrjh01rwasq3gd6xbif9n"; depends=[]; }; - vosonSML = derive2 { name="vosonSML"; version="0.29.4"; sha256="0ngipwg83xw832ikaaqbyh2zxkwwwxalp6xrb60dk96z2r7qgj2r"; depends=[data_table dplyr Hmisc httpuv httr igraph magrittr purrr RCurl RedditExtractoR rlang rtweet stringr textutils tibble tictoc tm]; }; + vosonSML = derive2 { name="vosonSML"; version="0.29.13"; sha256="0xajffifapn0sfnp39p8iv6hdxindzi7vywcwhla9h2hmvraad6w"; depends=[data_table dplyr Hmisc httpuv httr igraph jsonlite lubridate magrittr purrr RCurl rlang rtweet stringr textutils tibble]; }; vote = derive2 { name="vote"; version="1.2-1"; sha256="14bqmamndq5l7mfij8kfzk2lyrn0b52jgafgy9qb93qvk1fr5raz"; depends=[formattable knitr]; }; voteogram = derive2 { name="voteogram"; version="0.3.1"; sha256="12xv0c3g4vr23c8adkk8z7m7sx31w5mjvdg9h4qbvaimb99p2r7z"; depends=[dplyr ggplot2 jsonlite scales]; }; votesys = derive2 { name="votesys"; version="0.1.1"; sha256="1z7cx3rj3bfrkb6jkmf1m1wad5ff46zrab5vhk69wf3jbwd9h920"; depends=[data_table gtools Matrix]; }; vottrans = derive2 { name="vottrans"; version="1.0"; sha256="1fp7jrw072ws39bqsg88bm2qndcv68aa2vdqwgnza58p1dfq3x9f"; depends=[quadprog]; }; - vov = derive2 { name="vov"; version="0.1.0"; sha256="0ndcmkynd1b0l8672h5ziwvddijkxxrj5yvp95ry322rr253yckb"; depends=[glue htmltools shiny]; }; + vov = derive2 { name="vov"; version="0.1.1"; sha256="02bhm4fwaqqjz1vki7yzzg4ybw0w84a7wf7qyfyvigmdyrqrngy0"; depends=[glue htmltools shiny]; }; vowels = derive2 { name="vowels"; version="1.2-2"; sha256="0xhfn3avx9h6kg3jwd47n2x7w8q8c9h13wsxd74hhbbn2gkjrs84"; depends=[]; }; vows = derive2 { name="vows"; version="0.5"; sha256="06akjdbab9v7r47di7syvcm7gf4k81djizg8maszs5l1ksyhmv6b"; depends=[fda gamm4 mgcv oro_nifti RLRsim shape stringr]; }; voxel = derive2 { name="voxel"; version="1.3.5"; sha256="1xlym8xc22dq67h0lylrr16z7b4zdidpgrkvbs7n9fnkh6vijw2j"; depends=[gamm4 ggplot2 lmerTest mgcv oro_nifti purrr]; }; - vpc = derive2 { name="vpc"; version="1.1.0"; sha256="15ws6zfizyryn3bvjvs053n81k2g9k641dqmwvgy152bsg7w7fwx"; depends=[classInt dplyr ggplot2 MASS readr reshape2 survival]; }; + vpc = derive2 { name="vpc"; version="1.2.1"; sha256="0w73p8i4yf3m9r13476w90303nr307dw2y78zq8ydrcqrhn2fm47"; depends=[classInt dplyr ggplot2 MASS readr stringr survival tidyr]; }; vqtl = derive2 { name="vqtl"; version="2.0.5"; sha256="1sby1wi1lczs5cx97phq8dh15z68517rnw2zn5rzqa1399nmkkhf"; depends=[dglm doParallel dplyr evd foreach ggplot2 gtools iterators knitr lazyeval purrr qtl stringr testthat tidyr]; }; vrcp = derive2 { name="vrcp"; version="0.1.1"; sha256="1wrch1dqy752gkj24h1dgi2x3kf1797xj4pf1s9mszf3x3ic905d"; depends=[ggplot2]; }; vrmlgen = derive2 { name="vrmlgen"; version="1.4.9"; sha256="0lifhhf41yml4k83wpkssl14jgn8jaw1lcknwbci1sd8s1c4478l"; depends=[]; }; - vroom = derive2 { name="vroom"; version="1.2.0"; sha256="1hpniwshmvx5mmv01sra4l6xaki8m2a2c98fg0p7gi06g2r0m6fs"; depends=[bit64 crayon glue hms lifecycle progress Rcpp rlang tibble tidyselect withr]; }; + vroom = derive2 { name="vroom"; version="1.3.0"; sha256="18ndp453hfwvfxd6xzy0xbw9ll8s4q46dnr1biiqzh5rw70gwwzp"; depends=[bit64 cpp11 crayon glue hms lifecycle progress rlang tibble tidyselect vctrs withr]; }; vrtest = derive2 { name="vrtest"; version="0.97"; sha256="00hdgb0r18nwv3qay97b09kqqw9xqsbya06rrjyddqh9r6ggx1y0"; depends=[]; }; vscc = derive2 { name="vscc"; version="0.2"; sha256="1p14v8vd8kckd44g4dvzh51gdkd8jvsc4bkd2i4csx8vjiwrni5w"; depends=[mclust teigen]; }; vsgoftest = derive2 { name="vsgoftest"; version="0.3-2"; sha256="020kghcfv8h0i7fzq3p2grhhbwvqmc9ya9r7lc1kiqg1bfgljg91"; depends=[fitdistrplus Rcpp]; }; vstsr = derive2 { name="vstsr"; version="1.0.0"; sha256="0flsw5yw1vmj5x866klxmjqz5aimkvjiwl1zdciz63p9zffmb4gz"; depends=[httr jsonlite magrittr R6 RCurl xml2]; }; - vtable = derive2 { name="vtable"; version="1.0.1"; sha256="0zj7xx4qk6gdia8q4jjsa3wcpcszn3lxv9afy892n9w6nigpfrmq"; depends=[haven rstudioapi sjlabelled]; }; - vtreat = derive2 { name="vtreat"; version="1.6.0"; sha256="1qldqdc0k5ifzqy53fmh24cdxl4xxil9s3l8kff23fdvm3fmvk3n"; depends=[digest wrapr]; }; - vtree = derive2 { name="vtree"; version="4.0.0"; sha256="0i88ab7pjbj5s5xvykx47xxhqlk1vw3anra30wvhy6cr9774x8bg"; depends=[DiagrammeR DiagrammeRsvg htmlwidgets rsvg shiny]; }; + vtable = derive2 { name="vtable"; version="1.2.1"; sha256="1hdsm3qnahm2d38skv5qwzwxl5h6lbxak3wdi7ac9w846yfwlii1"; depends=[haven kableExtra knitr rstudioapi sjlabelled]; }; + vtreat = derive2 { name="vtreat"; version="1.6.1"; sha256="059g0w2dlh5axclnrr1j128ma0q406gkrqxwhb8jr45kqppbjcc8"; depends=[digest wrapr]; }; + vtree = derive2 { name="vtree"; version="5.0.0"; sha256="1sflc9zk6rllxrirdmzj5nlkmf8gax1fvnhqaggpjd3pyhhvi3y0"; depends=[DiagrammeR DiagrammeRsvg htmlwidgets rsvg shiny]; }; vudc = derive2 { name="vudc"; version="1.1"; sha256="0zxz6n3ixa3xjzcinky8ymqjx9w8y8z65mz8d84dl00mxzkmkz4h"; depends=[]; }; vwline = derive2 { name="vwline"; version="0.2-2"; sha256="1hilr996xn5wh8kfyab55w2i1c02a8x909h4ahag5q6s7603qng5"; depends=[gridBezier polyclip]; }; vwr = derive2 { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[lattice latticeExtra stringdist]; }; @@ -15252,25 +15830,25 @@ in with self; { wTO = derive2 { name="wTO"; version="1.6.3"; sha256="1cgbw37b734ipg5qhjsil55qysfn6xmymj1q99ybkadi0axp55nn"; depends=[data_table igraph magrittr plyr reshape2 shiny som visNetwork]; }; waccR = derive2 { name="waccR"; version="0.1.0"; sha256="092p1bibyqx1gcrch68l9ilzilg5aqf46b6iagm562292cfi074l"; depends=[dplyr lubridate magrittr rvest tibble xml2]; }; wactor = derive2 { name="wactor"; version="0.0.1"; sha256="0dc7413jb3yz0nns2lc93w32wv6m4sg17j2ip63gc12vis0nf855"; depends=[ggplot2 Matrix R6 text2vec tibble tokenizers xgboost]; }; - waffect = derive2 { name="waffect"; version="1.2"; sha256="0r5dvm0ggyxyv81hxdr1an658wkqkhqq2xaqzqpnh4sh4wbak35a"; depends=[Rcpp]; }; waffle = derive2 { name="waffle"; version="0.7.0"; sha256="1qjmai33p96cyavi9lgi6k30h6fj7db5sr569v9jf4kwx92c61df"; depends=[extrafont ggplot2 gridExtra gtable RColorBrewer]; }; wahc = derive2 { name="wahc"; version="1.0"; sha256="1324xhajgmxq6dxzpnkcvxdpm2m3g47drhyb2b3h227cn3aakxyg"; depends=[]; }; - waiter = derive2 { name="waiter"; version="0.1.0"; sha256="13csg6iy6fzr5fkz3wvmj1fvi0csijbgmvz262jnrq1c75srirmb"; depends=[magrittr R6 shiny]; }; + waiter = derive2 { name="waiter"; version="0.1.2"; sha256="0pcqwlzvsjagfy8lz2dzjlynpxabaffh7hn1blmsbxnqirc5gc6d"; depends=[crayon htmltools magrittr R6 rstudioapi shiny]; }; wakefield = derive2 { name="wakefield"; version="0.3.3"; sha256="05z9a6g1cdavalp50wss7klnlcdbv3y1jvz1v8ry1x2bziy216y2"; depends=[chron dplyr ggplot2 stringi]; }; - waldo = derive2 { name="waldo"; version="0.1.0"; sha256="12405hc65mhwg69fp6m4g96zn8imx2jb9vl1pv6im0wmrqff3ay6"; depends=[cli diffobj fansi glue rematch2 rlang tibble]; }; - walker = derive2 { name="walker"; version="0.3.1-1"; sha256="135x32ar8m4m4zxdz94c7wrddsb0ps58nywh2k2gh3kqjbbzxx7a"; depends=[bayesplot BH dplyr ggplot2 KFAS Rcpp RcppArmadillo RcppEigen rstan StanHeaders]; }; + waldo = derive2 { name="waldo"; version="0.2.0"; sha256="1p4dvlvvh51n61sspxqzn7v03rgmzym0kas1wkvxx3nv9y4p8qhd"; depends=[cli diffobj fansi glue rematch2 rlang tibble]; }; + walker = derive2 { name="walker"; version="0.4.1-3"; sha256="114dfrz4say3j4i53fxs83px10dy1c2aian212aygjr9w3csmj38"; depends=[bayesplot BH coda dplyr ggplot2 Hmisc KFAS Rcpp RcppArmadillo RcppEigen rlang rstan rstantools StanHeaders]; }; walkscoreAPI = derive2 { name="walkscoreAPI"; version="1.2"; sha256="1c2gfkl5yl3mkviah8s8zjnqk6lnzma1yilxgfxckdh5wywi39fx"; depends=[]; }; wallace = derive2 { name="wallace"; version="1.0.6.2"; sha256="0qhy1m9imwqmb6lzgx25xqqyrlja13g4l96c6q9mn008kmljpn0n"; depends=[dismo dplyr DT ENMeval leaflet leaflet_extras magrittr maptools raster RColorBrewer rgdal rgeos rmarkdown shiny shinyjs shinythemes spocc spThin testthat XML zip]; }; wally = derive2 { name="wally"; version="1.0.10"; sha256="1d03vxn6q7v0nsrkd7dxkkv3siysgicv6c13fkvwmypln9vsl6sl"; depends=[data_table prodlim riskRegression]; }; walmartAPI = derive2 { name="walmartAPI"; version="0.1.5"; sha256="1nng8izncj2nmmpywn1ggpzvjh8q7y3q6260qhy9kbmvrrl26spf"; depends=[dplyr glue httr magrittr purrr stringr tibble]; }; walrus = derive2 { name="walrus"; version="1.0.3"; sha256="1nk2glcvy4hyksl5ipq2mz8jy4fss90hx6cq98m3w96kzjni6jjj"; depends=[ggplot2 jmvcore R6 WRS2]; }; wand = derive2 { name="wand"; version="0.5.0"; sha256="0y9xmh9a93lnadg83i223j2nf77jazz8m1ck1bmdf5jwj4vyzaqa"; depends=[]; }; - warbleR = derive2 { name="warbleR"; version="1.1.23"; sha256="0qvi2kfp6fvi45kh21fcrj9b0wdk67mm67v16fvgbjk9dvwi67kv"; depends=[dtw fftw maps monitoR NatureSounds pbapply pracma RCurl rjson seewave Sim_DiffProc tuneR]; }; + warbleR = derive2 { name="warbleR"; version="1.1.24"; sha256="1hrp9yd1ny5krkv1bfvzhw0jm6r6qy52mzf0vb72cb62bay6rgfp"; depends=[dtw fftw monitoR NatureSounds pbapply RCurl rjson seewave tuneR]; }; warp = derive2 { name="warp"; version="0.1.0"; sha256="16bmym91h0sbbh4iqasqs0f4kp3jqlm3sqgc356mznhxwnsm8dm2"; depends=[]; }; warpMix = derive2 { name="warpMix"; version="0.1.0"; sha256="13zbl4aifhg7j5b3vpwgzgs09hr7yblz0rckmj5qh40s78j8cpfn"; depends=[fda fields lme4 MASS nlme reshape2]; }; washdata = derive2 { name="washdata"; version="0.1.2"; sha256="01cnlhymh3qg9c7fda8s6lvm4j2vklmb72dfk17sn4p0kkikf9m8"; depends=[]; }; washeR = derive2 { name="washeR"; version="0.1.2"; sha256="0sb5sgwf7y9sd291qfj1az3x6h6gmznnnsdmqizkmv2xz9029rxz"; depends=[gplots]; }; wasim = derive2 { name="wasim"; version="1.1.2"; sha256="1zydzw7cihhdwv0474fnc4lgaq5fwrv8jinz79vkbidbgcy7i2fd"; depends=[fast MASS qualV tiger]; }; + waspr = derive2 { name="waspr"; version="1.0.0"; sha256="0rs7h9pjiqq7as5k7yrj3phn6lgdl7dzyirbmk2jjp7mw9iqhy9i"; depends=[BH Rcpp RcppArmadillo]; }; water = derive2 { name="water"; version="0.8"; sha256="0qglf922dlgi41jzz3sivq7ckmzl8axqjfg4klcgnddycmm3ha5j"; depends=[raster rgdal sp]; }; waterData = derive2 { name="waterData"; version="1.0.8"; sha256="0884agh876wf3qlbc75fbaa47x2iwvncz7r2l25qw34n8lxq1yr6"; depends=[dataRetrieval lattice latticeExtra lubridate xml2]; }; waterYearType = derive2 { name="waterYearType"; version="1.0.1"; sha256="09brbqcd41khycz9lhn84w68wpk8lsdnzb6lzc10gm5s5ambgj06"; depends=[]; }; @@ -15280,23 +15858,24 @@ in with self; { wavScalogram = derive2 { name="wavScalogram"; version="1.0.0"; sha256="0j3dj32rxqsrc4gwssj7n224j7q4c4pahixw8b0p9xakx93q54id"; depends=[abind colorRamps fields Matrix zoo]; }; waveband = derive2 { name="waveband"; version="4.7"; sha256="0b57g7jwvqgqjzd7x1pd4nqpx22rmiskvf8wjwrgplqzx4daxny2"; depends=[wavethresh]; }; waved = derive2 { name="waved"; version="1.2"; sha256="0zv4rgazk9s295pggzfa7sc062zv68dgds1ngxcz7vg1fx0qkgxg"; depends=[]; }; + waveformlidar = derive2 { name="waveformlidar"; version="1.2.0"; sha256="1dq8f9vafby3ay5qc1fvrw8h8qjjydk7fz7s5nbkm1bdhvj6smw2"; depends=[caTools data_table flux minpack_lm raster reshape2 rgdal rgeos sp splitstackshape sqldf]; }; wavefunction = derive2 { name="wavefunction"; version="1.0.0"; sha256="1g0g9i0s93lcpcx7icqn15bvkmd79slkgimspvvwp2bxdsc5nnf2"; depends=[]; }; wavelets = derive2 { name="wavelets"; version="0.3-0.2"; sha256="07706rsjdmzj46ib2kfm5lfk4bnm2wfw7rby0ixs6x0myyzxdl92"; depends=[]; }; - wavemulcor = derive2 { name="wavemulcor"; version="2.2.1"; sha256="0150ybf8lwxc93zhcrsmh4gp6wbib3s14j95jlg6dlsckixyi3iw"; depends=[waveslim]; }; + wavemulcor = derive2 { name="wavemulcor"; version="3.1.0"; sha256="1f7idj8vjnssh6s2h4vji1jlpf55hp4zvv5wsi2c9w7iyxwlhs5n"; depends=[plot3D RColorBrewer waveslim]; }; waver = derive2 { name="waver"; version="0.2.1"; sha256="1kl14cd96fwrqvk35sqbgi8bf31gc2ccxxy5d1v46scwyqkb0g5l"; depends=[geosphere rgdal rgeos sp]; }; waveslim = derive2 { name="waveslim"; version="1.8.2"; sha256="0ibivnhz0l06sss5rrrcvyiwg3qpbyk3qn4vx4pp90kj09x4yg0k"; depends=[]; }; wavethresh = derive2 { name="wavethresh"; version="4.6.8"; sha256="1nz74bm7pgck1i9c28svxnic8wkwkm5dhc8bhrxiih5wxb36kcwk"; depends=[MASS]; }; wbs = derive2 { name="wbs"; version="1.4"; sha256="0ibrf30riavy6shaxgiznwh4gmnkx92260gsl0d74jkys98mlxdj"; depends=[]; }; - wbstats = derive2 { name="wbstats"; version="0.2"; sha256="0rfc9c6892jq7y17dwp6vsn62ggnac964xndmxq3mip6k2pk8yi0"; depends=[httr jsonlite tidyr]; }; - wbsts = derive2 { name="wbsts"; version="2.0"; sha256="12k68nsrrxglrm9ik53rm8160xvjlsgzi7v4wp78jhmh2slmyxw3"; depends=[mvtnorm Rcpp wmtsa]; }; - wdm = derive2 { name="wdm"; version="0.2.1"; sha256="05yc366g2lii305ljrhh9939gf8sf517alw5xcr2sdclr00qxal4"; depends=[Rcpp]; }; + wbsd = derive2 { name="wbsd"; version="1.0.0"; sha256="16jhimsq8symf6f2awczqkaqkdmlkzhmgk01iimhkvqlx8g2v219"; depends=[Rcpp RcppEigen]; }; + wbstats = derive2 { name="wbstats"; version="1.0.1"; sha256="15wcd3f7cjjgksa0ryzbj7wyzwifimxn5c3gnyrks8pwlmbyvqkx"; depends=[dplyr httr jsonlite lifecycle lubridate readr stringr tibble tidyr]; }; + wbsts = derive2 { name="wbsts"; version="2.1"; sha256="07h3wqmb9ya878fwdj49r0npks0pnd3jlnzri1cmf27c691hwka4"; depends=[mvtnorm Rcpp wavelets]; }; + wdm = derive2 { name="wdm"; version="0.2.2"; sha256="1pidlfp67x3wnmkp0qgna4vz29qx09xsy7gfbqzrjqkdi7q1dihi"; depends=[Rcpp]; }; wdman = derive2 { name="wdman"; version="0.2.5"; sha256="1yf41lsrr9dbf5n4f5hv9mlmzl736fhnp9gxkm2g9apws6gsig02"; depends=[assertthat binman processx semver yaml]; }; - wdpar = derive2 { name="wdpar"; version="1.0.2"; sha256="0ybslv1vbvqskmr5s8b9ama6g30g8bjr74hir3mxdwsr4kf668sm"; depends=[assertthat cli countrycode curl httr lwgeom progress rappdirs RSelenium sf sp tibble wdman xml2]; }; - weathercan = derive2 { name="weathercan"; version="0.3.4"; sha256="1nglfmlwb3l1rlp7vgm2d77yx4fn39i8ps54v6jvsbs0p57s5xhi"; depends=[dplyr httr lubridate purrr rlang rvest stringi stringr tidyr tidyselect xml2]; }; + wdpar = derive2 { name="wdpar"; version="1.0.3"; sha256="1kig7adsvvnhkvrhc5ij79vapcn31hb06v6vs3y6n8265n2nq0ac"; depends=[assertthat cli countrycode curl httr lwgeom progress rappdirs RSelenium sf sp tibble wdman xml2]; }; weathermetrics = derive2 { name="weathermetrics"; version="1.2.2"; sha256="1hjhgsy3v8328hv4czxxz7kp68sxc10sy10f3dv5j8f6pka6qlsp"; depends=[]; }; - weatherr = derive2 { name="weatherr"; version="0.1.2"; sha256="11sb5bmqccqkvlabsw4siy9n6ivsrvxavywvaffgrs3blmnygql9"; depends=[ggmap lubridate RJSONIO XML]; }; + weatherr = derive2 { name="weatherr"; version="0.1.3"; sha256="14w7kkja3a1zmdc7l084iprx1czqgdfjzjc29wdlwzmaiq02c4d3"; depends=[ggmap lubridate RJSONIO XML]; }; webTRISr = derive2 { name="webTRISr"; version="0.2.0"; sha256="10xj8qvibhnywsxd1yb4laz6b38qwn483a7bflizsndsgrbzdi5n"; depends=[dplyr httr jsonlite lubridate magrittr purrr readr sf stringr]; }; - webchem = derive2 { name="webchem"; version="0.5.0"; sha256="06vnwvh054cj1hflip108h99ps0cb57cq4f8ydrjcxgpplbx0v4w"; depends=[dplyr httr jsonlite purrr RCurl rvest stringr xml2]; }; + webchem = derive2 { name="webchem"; version="1.0.0"; sha256="1c4n0kx8fxxrz5263lkkdmgz24akg28mjhc0cmaqbwm6mllz48r6"; depends=[data_tree dplyr httr jsonlite purrr RCurl rvest stringr tibble xml2]; }; webdriver = derive2 { name="webdriver"; version="1.0.5"; sha256="0l3nz7gf62jlkvkn5sfxfvn0prxz3ds7nlpfb1yhnmdljhbzrgzf"; depends=[base64enc callr curl debugme httr jsonlite R6 showimage withr]; }; webex = derive2 { name="webex"; version="0.9.1"; sha256="0z85cfnjicy3q1n77ilrh43h6xh6bpr1f1iinzfk1r64031h90yl"; depends=[jsonlite knitr rmarkdown]; }; webglobe = derive2 { name="webglobe"; version="1.0.2"; sha256="1277d6fkgrgixlhikfwf0r6z8g5b7mah905xi219qsfycxmifgn9"; depends=[geojsonio httpuv jsonlite]; }; @@ -15306,9 +15885,9 @@ in with self; { webreadr = derive2 { name="webreadr"; version="0.4.0"; sha256="0l3l5g4zj5faxqi1kqwx9lq91gbj40z2q3csrsmpal08qnwkxs90"; depends=[Rcpp readr]; }; websearchr = derive2 { name="websearchr"; version="0.0.3"; sha256="1c6dwm5g5rjq0b12zrwwi5k9760jb0ph83v4j2gm8zm0x9dhiqm9"; depends=[]; }; webshot = derive2 { name="webshot"; version="0.5.2"; sha256="0gq4h8cw51z95yvsnf38kj5l58wgljkm0dalmi8mn1sp06bxr0zi"; depends=[callr jsonlite magrittr]; }; - websocket = derive2 { name="websocket"; version="1.1.0"; sha256="1qw3cb48ha579cijasq23w946p138k2x9yl37kpf51lyaagikzg1"; depends=[AsioHeaders BH later R6 Rcpp]; }; + websocket = derive2 { name="websocket"; version="1.3.1"; sha256="03kfwfirwvyimd7v0c2x60ryg6syhd4jds5fbg763x23jxrhqj10"; depends=[AsioHeaders BH later R6 Rcpp]; }; webuse = derive2 { name="webuse"; version="0.1.3"; sha256="09xvw0v991cq1ck2kfxblp5cngfh9j6swvh5xv420mvky0kshv32"; depends=[haven]; }; - webutils = derive2 { name="webutils"; version="1.0"; sha256="0khvvfrjhzcjbnsjshbsjgqk2pcvhkw34248f9wglwjmmsh6wbs1"; depends=[curl jsonlite]; }; + webutils = derive2 { name="webutils"; version="1.1"; sha256="16a6ds0fnb6y8i1r9ba1hf1ydb53am57s070b3hi5jmrs84b9qik"; depends=[curl jsonlite]; }; wec = derive2 { name="wec"; version="0.4-1"; sha256="10lqh43536d44d6082rpp11q1323pmjbmgrgb8v9mrk9c1ysf50w"; depends=[dplyr]; }; weco = derive2 { name="weco"; version="1.2"; sha256="1prk8hn782pd8g2rbbaj7y10vjimqs9n8i4rab6aw6fc3k759d6b"; depends=[]; }; wedge = derive2 { name="wedge"; version="1.0-3"; sha256="17w6987b8yh6gxsfn5vchzha8fznyganqp92zxc96h9iv7b40kkj"; depends=[magrittr partitions permutations spray]; }; @@ -15316,6 +15895,7 @@ in with self; { weibulltools = derive2 { name="weibulltools"; version="1.0.1"; sha256="06blip2dqaz2f3wnghp8yj0qj23s242k3r7bfcka1n52msc58xjz"; depends=[dplyr LearnBayes magrittr plotly Rcpp RcppArmadillo sandwich segmented SPREDA survival]; }; weightQuant = derive2 { name="weightQuant"; version="1.0"; sha256="1ngz51wr5qpnb98lfbddwvipcra86dq5whm6z8c4xd921anb15bx"; depends=[doParallel foreach quantreg]; }; weightedScores = derive2 { name="weightedScores"; version="0.9.5.3"; sha256="1wf01z94snwbqp22waz7qays3ymg5lsxpfpafdarad2b6mg5j2g8"; depends=[mvtnorm rootSolve]; }; + weightedZdiff = derive2 { name="weightedZdiff"; version="0.1.0"; sha256="1mrhjg0h7qiwya8jrmf5h4gc352ahc6fczlk5kfhqw5vkwr0b1k3"; depends=[]; }; weightr = derive2 { name="weightr"; version="2.0.2"; sha256="1qsyak91kdgv48wf6qhpfbiirlg4ba9w6rw8ynjcsnqqdvmly1lb"; depends=[ggplot2 scales]; }; weights = derive2 { name="weights"; version="1.0.1"; sha256="1ka2kvzg464vn80qziqy4mrciy9wwd3jfasgq0d33wbiblhmxkj5"; depends=[gdata Hmisc mice]; }; weirs = derive2 { name="weirs"; version="0.25"; sha256="17a0ppi7ghikrwn39zvhg2cvhmnr3w0qi7r9lj22x65ii9nzadd7"; depends=[]; }; @@ -15329,65 +15909,70 @@ in with self; { wflo = derive2 { name="wflo"; version="1.5"; sha256="1k9iyyr15hzbsram1246zb415hgwg8kr15zp78q9b6yf3yr46kmb"; depends=[]; }; wgaim = derive2 { name="wgaim"; version="2.0-1"; sha256="1qiyfkpsbzjr9xsq5kqq6rlqpndngkn2irdfh3gyi45h6hn118j4"; depends=[ggplot2 qtl]; }; wgeesel = derive2 { name="wgeesel"; version="1.5"; sha256="0lybvsq5168cjybzv2dbyx2z8aakcx7i7ivm8zc90haiispm9n5x"; depends=[bindata CRTgeeDR geepack MASS PoisNor]; }; - whatr = derive2 { name="whatr"; version="1.0.0"; sha256="0l9yvbqib2pf93dlslj5268c8l9zzywmy4kwijlvink6fasllrcn"; depends=[dplyr ggplot2 httr magrittr purrr rlang rvest scales stringr tibble tidyr xml2]; }; + whatr = derive2 { name="whatr"; version="1.0.1"; sha256="1nnrirm0c5b053jk5l5gkrwmx4i7y2xgbwbs5qcba61s5w4n4h2x"; depends=[dplyr ggplot2 httr magrittr purrr rlang rvest scales stringr tibble tidyr xml2]; }; wheatmap = derive2 { name="wheatmap"; version="0.1.0"; sha256="1c1xvzy194vw3idkwkqp9kyrfldzczj30cl15jw1bbnw87zcwdzy"; depends=[colorspace RColorBrewer]; }; whereami = derive2 { name="whereami"; version="0.1.9"; sha256="0mjq9haacsf0zkgh7xxx8dr67hnw5ijjdhaz8c69mfjmd2zfzfwq"; depends=[cli jsonlite rstudioapi]; }; whereport = derive2 { name="whereport"; version="0.1"; sha256="1gdqzr2hrnpxbwl7cfps4m3xja8wkgwfs50i2nailybympvdnxm4"; depends=[dplyr]; }; whisker = derive2 { name="whisker"; version="0.4"; sha256="1a7vz0dk95xfjvi38wbpw8vmf5qn3g8p490msz2rw0piwidmk1ks"; depends=[]; }; whitechapelR = derive2 { name="whitechapelR"; version="0.3.0"; sha256="0mnq5m59mw8w5g1p0h2xzlz738j397b3444km59bm5yln3j0nsbi"; depends=[igraph plyr]; }; whitening = derive2 { name="whitening"; version="1.1.1"; sha256="0madrdy2pvr7q4lhznw2kyhs7x927npwmpqwfwkv6v5c4zv7mbjp"; depends=[corpcor]; }; - whoa = derive2 { name="whoa"; version="0.0.1"; sha256="1gkm3l0kjf52yc6y437dsfx3hc9bfhnb049hm4qii46nr1plz69x"; depends=[dplyr ggplot2 magrittr Rcpp tibble tidyr vcfR viridis]; }; + whitestrap = derive2 { name="whitestrap"; version="0.0.1"; sha256="1jcnxqxvkhyz9j6jay5834ncv5fxb9qiyyyj3b8al75mqknmn8ra"; depends=[]; }; whoami = derive2 { name="whoami"; version="1.3.0"; sha256="19fwl7z55s4kl2xzwqwh8iwg13kdrv222vyl3kibxgwrjcjwj2y2"; depends=[httr jsonlite]; }; whoapi = derive2 { name="whoapi"; version="0.1.2"; sha256="0ib0an08xsxan24q8mb5ai375njmkdc61lh4321rzgr25iqvi682"; depends=[httr]; }; wicket = derive2 { name="wicket"; version="0.4.0"; sha256="1lizzmj69bswzlk18fv2v4yxxc6dynvmkymdiafznzcyyz4a8xnf"; depends=[BH Rcpp]; }; widals = derive2 { name="widals"; version="0.6.1"; sha256="1094yaaq2xb0ykvc1j3hs87j1p4h7zgf8mkn4han8iw5fmr9zncy"; depends=[snowfall]; }; widgetframe = derive2 { name="widgetframe"; version="0.3.1"; sha256="0j0d73m72nzfc1wyrgsqr99ldx72adis6pd57mpim55hz0n9l224"; depends=[htmltools htmlwidgets magrittr purrr]; }; widyr = derive2 { name="widyr"; version="0.1.3"; sha256="1mkgkn5lf3q9i3fhkz6v9lxl68kwhjn6bwxi3ks1v3njbsacnkay"; depends=[broom dplyr Matrix purrr reshape2 rlang tidyr tidytext]; }; - wiesbaden = derive2 { name="wiesbaden"; version="1.2.2"; sha256="0zxz2cnxgx0p66ls1x2pz5i9iiv67ajm30a2n8m1alljnza6qigf"; depends=[httr jsonlite keyring readr stringi stringr xml2]; }; + wiesbaden = derive2 { name="wiesbaden"; version="1.2.3"; sha256="0bk73zfs97sk38c2wg83dp5n6ssy0fxzppvl16zb0fj798q8lvd7"; depends=[httr jsonlite keyring readr stringi stringr xml2]; }; wikibooks = derive2 { name="wikibooks"; version="0.2"; sha256="178lhri1b8if2j7y7l9kqgyvmkn4z0bxp5l4dmm97x3pav98c7ks"; depends=[]; }; - wikifacts = derive2 { name="wikifacts"; version="0.1.0"; sha256="01mwzqign59lh7wvf8q8kwkgnfxi9nkk6n0qwfh27q64fajw8clg"; depends=[magrittr rvest xml2]; }; + wikifacts = derive2 { name="wikifacts"; version="0.4"; sha256="1ln0ffrsxlqmhnqfwk6rkss3spx6svpndm6vgxyhgjfhgk1qh293"; depends=[curl magrittr rvest xml2]; }; wikilake = derive2 { name="wikilake"; version="0.4"; sha256="0pm0brzkf2k6aknwl4b3fba5ly7mhah8qfb0h94fckiaqbnpyx9v"; depends=[maps rvest selectr sp stringi stringr units WikipediR xml2]; }; - wikipediatrend = derive2 { name="wikipediatrend"; version="2.1.4"; sha256="1skmlw2vmipddrmqmwycb9abq4cgva4lfjdcp9ijk6sgywiz70is"; depends=[ggplot2 glue hellno httr pageviews rvest stringr xml2]; }; - wikisourcer = derive2 { name="wikisourcer"; version="0.1.4"; sha256="0x6yp7hmrasrxpwlbsabzrr316d5yxynafmv0jh6yhx4i36l08wf"; depends=[magrittr purrr rvest tibble urltools xml2]; }; - wikitaxa = derive2 { name="wikitaxa"; version="0.3.0"; sha256="0v681qac33dlcdlah20qf5qb9g5h917rpzv67brx1handjnapnqh"; depends=[crul curl data_table jsonlite tibble WikidataR xml2]; }; + wikipediatrend = derive2 { name="wikipediatrend"; version="2.1.6"; sha256="11ng7qsb4954mgsz55ix86z0ynh4xgflcp6dzl0y4zi6zdrj87i7"; depends=[ggplot2 glue hellno httr pageviews rvest stringr xml2]; }; + wikisourcer = derive2 { name="wikisourcer"; version="0.1.5"; sha256="0a69p17fq1iw55vn1rc76xb9q5s60a4x0i7lyx6abz7wxi7gzbvi"; depends=[curl httr magrittr purrr rvest tibble urltools xml2]; }; + wikitaxa = derive2 { name="wikitaxa"; version="0.4.0"; sha256="1z7p7dwgl8x4ambwss5dqlp4zgz52mgj0vhx2bqwizarmx9ji1xs"; depends=[crul curl data_table jsonlite tibble WikidataR xml2]; }; wildcard = derive2 { name="wildcard"; version="1.1.0"; sha256="0qkzab84z95g5f4fv3v4wisccgd7k9m3210pz4nvm1x8rfaqfjf1"; depends=[magrittr stringi]; }; wildlifeDI = derive2 { name="wildlifeDI"; version="0.3.0"; sha256="1aqiazrr2sp76777m0isscainhdnn9qp87dwpr4cspk7grbsa53k"; depends=[adehabitatLT rgeos sp]; }; wildpoker = derive2 { name="wildpoker"; version="1.1"; sha256="1302ain55spz34irmq49sp9b1pvrn2nxmzmqs8m9wdk6g82h3s27"; depends=[]; }; - wilson = derive2 { name="wilson"; version="2.3.1"; sha256="040hq68l2ja37gx8g6q1nrr9b15v4gmc2l23c772vr4gq9k97977"; depends=[circlize colourpicker ComplexHeatmap data_table DESeq2 DT factoextra FactoMineR ggplot2 ggrepel gplots heatmaply log4r magrittr openssl plotly plyr R6 RColorBrewer reshape rintrojs rje rjson RJSONIO scales shiny shinycssloaders shinydashboard shinyjs viridis zip]; }; + wilson = derive2 { name="wilson"; version="2.4.0"; sha256="0cb9s7v2c0isp4z8rjxdyzn26k8h6h2z956lznl971hm786pq7z9"; depends=[circlize colourpicker ComplexHeatmap data_table DESeq2 DT factoextra FactoMineR ggplot2 ggrepel gplots heatmaply log4r openssl plotly plyr R6 RColorBrewer reshape rintrojs rje rjson RJSONIO scales shiny shinycssloaders shinydashboard shinyjs shinyWidgets viridis zip]; }; winRatioAnalysis = derive2 { name="winRatioAnalysis"; version="0.1.0"; sha256="1msvc06bfzw9clinxbvr5fdw38dff0c0xii46182nwnk5kj0libr"; depends=[data_table JM Matrix MLEcens mvtnorm nlme plyr pssm survival]; }; - windAC = derive2 { name="windAC"; version="1.2.1"; sha256="0irm0bh9j0x72nq37lwycv6f30bb5xqm736rj6z0g6bnfd16rrmk"; depends=[mvtnorm sf]; }; + windAC = derive2 { name="windAC"; version="1.2.2"; sha256="0z8d1zqmrfsfj57gsc5znj8pzxqzs6cs4ygrns3qx5j8z6fwbr32"; depends=[mvtnorm sf]; }; windex = derive2 { name="windex"; version="1.0"; sha256="0ci10x6mm5i03j05fyadxa0ic0ngpyp5nsn05p9m7v1is5jhxci0"; depends=[ape geiger scatterplot3d]; }; windfarmGA = derive2 { name="windfarmGA"; version="2.2.3"; sha256="13jdh0c8lkc3043mnqx23s06xxkf6dvk7w9kfvwhib58rlgy0p2n"; depends=[calibrate doParallel foreach ggplot2 gstat leaflet magrittr raster RColorBrewer Rcpp rgdal rworldmap sf sp spatstat]; }; + winfapReader = derive2 { name="winfapReader"; version="0.1-1"; sha256="027jqnb91xdrp3aibhfbjx0wb5lcfzsxi8ychjifzja5f22qd6zw"; depends=[lubridate]; }; wingui = derive2 { name="wingui"; version="0.2"; sha256="0yf6k33qpcjzyb7ckwsxpdw3pcsja2wsf08vaca7qw27yxrbmaa3"; depends=[Rcpp]; }; - wiqid = derive2 { name="wiqid"; version="0.2.3"; sha256="166d9cdrj8vz2m5n1yxhckhs9nmd3sv13c3jcifzjixl45f8f2aa"; depends=[coda HDInterval MASS truncnorm]; }; + wiqid = derive2 { name="wiqid"; version="0.3.0"; sha256="0jqnlyw5iljpm7135fgnkwjvxmbjbqiqq6lchwnjmhbb5xd3kbvr"; depends=[coda HDInterval MASS mcmcOutput plotrix truncnorm]; }; wiseR = derive2 { name="wiseR"; version="1.0.1"; sha256="187ylwhk06957x9zm5r0m6w9wg08im83myz3s4gr927ig8yv3b5f"; depends=[arules bnlearn DescTools dplyr DT graph HydeNet igraph linkcomm missRanger psych RBGL Rgraphviz rhandsontable rintrojs shiny shinyalert shinyBS shinycssloaders shinydashboard shinyWidgets visNetwork]; }; withr = derive2 { name="withr"; version="2.2.0"; sha256="10mmfffjbnb2zq5x0kqhhb4z6va4micc6pjzvlfji34gyhffa8ac"; depends=[]; }; + wk = derive2 { name="wk"; version="0.3.2"; sha256="18zswapxi1fncjx33xg8awwi853z52m08c45hza10pbzi02rsnwr"; depends=[Rcpp]; }; wkNNMI = derive2 { name="wkNNMI"; version="1.0.0"; sha256="0qpl1b2134kz9mjl38w93lp3g6kpv9ygv9hygpssm845k02hkw7c"; depends=[foreach infotheo]; }; wkb = derive2 { name="wkb"; version="0.4-0"; sha256="0mah538345npkb06bcj18mb6qnnx8nn7bdqmvqqpbawallh546a9"; depends=[sp]; }; wktmo = derive2 { name="wktmo"; version="1.0.5"; sha256="05pjyk0xsdazbi1x7xfmg097ybybd60zmzzm7sch1ikp05hzn0wb"; depends=[]; }; + wkutils = derive2 { name="wkutils"; version="0.1.0"; sha256="1bkfm9zym37mbjspnlv4klkmxi3101y34szppa9bbahiq9gmn12k"; depends=[Rcpp tibble vctrs wk]; }; wmlf = derive2 { name="wmlf"; version="0.1.2"; sha256="0zxw84l5v12r15hpyd1kbajjz3cbkn5g884kmj72y7yi0yi1b6d6"; depends=[waveslim]; }; wmm = derive2 { name="wmm"; version="1.0.0"; sha256="0f46a69vcz1cb4qmz68gf8h0hq5amilsp9h4gmacmprad49n702g"; depends=[]; }; - wmtsa = derive2 { name="wmtsa"; version="2.0-3"; sha256="1q436krz5p1f4a7a7sya6a9rh9x9mi8zzcgq66gbk9w9w4hcqcj6"; depends=[ifultools MASS splus2R]; }; - wmwpow = derive2 { name="wmwpow"; version="0.1.2"; sha256="0f7gkpr64g2wl9ag70hikyjfqbr4c5nwzyfjwfpdl4a26c2k5xz6"; depends=[lamW MASS smoothmest]; }; - wnl = derive2 { name="wnl"; version="0.5.1"; sha256="09xm9x3wz0p9srncw5527slkqrqr37d6kgbzlc2g9zf9frmdlpmb"; depends=[numDeriv]; }; + wmwpow = derive2 { name="wmwpow"; version="0.1.3"; sha256="03rd75r4wih1w7srhnwqxjkirisb43y1sd2f1wzixqj8lq0dmb25"; depends=[lamW MASS smoothmest]; }; + wnl = derive2 { name="wnl"; version="0.6.0"; sha256="0mlwl63dr5mhhri628phcrhbv776pdhf7h3ag5jcxy9mqsc0i4xg"; depends=[numDeriv]; }; wnominate = derive2 { name="wnominate"; version="1.2.5"; sha256="0pvw36jzx90z7ah4f7cyf95csdn5x7n9rh3ddsppa61y1dmjsn5k"; depends=[pscl]; }; woe = derive2 { name="woe"; version="0.2"; sha256="15mvcmwnrqxpzn054lq85vyzq5rgxkiwbd40gnn4s3ny1xdrwgsm"; depends=[]; }; woeBinning = derive2 { name="woeBinning"; version="0.1.6"; sha256="0x890h5fh59n54587adyzphr956fkg3px8i7c378aq1fs7k35gxs"; depends=[]; }; woeR = derive2 { name="woeR"; version="0.2.1"; sha256="1k918j19iiri22scg16hb28wymf2nsr8yyz7qfg6mfvnif7im2sm"; depends=[dplyr]; }; womblR = derive2 { name="womblR"; version="1.0.4"; sha256="0yjz4nymhqq6aqvxf0a90bw3hi1zqz1zp3mxbv2ns5v5ygh2a10p"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; wooldridge = derive2 { name="wooldridge"; version="1.3.1"; sha256="0471x3vszf1c4fj9pk5ix8bdmp2bnq1ghnqvwzad9chvvkpzmg3l"; depends=[]; }; + worcs = derive2 { name="worcs"; version="0.1.3"; sha256="0w9nxdf40vmkqw0l5c293kbypa4wwhbhfvif8h8nqnz9ryznphkv"; depends=[digest gert prereg ranger rmarkdown rticles yaml]; }; word_alignment = derive2 { name="word.alignment"; version="1.1"; sha256="0inlq96j4zkjncz2v66amz91l5y3b5lx49qi2jg6jbqdldw7aa02"; depends=[data_table openxlsx]; }; + word2vec = derive2 { name="word2vec"; version="0.2.1"; sha256="10kly2d6g0abxz8r81jah1bgbjigysmyyqhmwljkl1gkwkirrqf7"; depends=[Rcpp RcppProgress]; }; wordbankr = derive2 { name="wordbankr"; version="0.3.0"; sha256="0aa1gz3fg7h9wnk93ialwj0wjyk8wxani8galwkrms4fp7d5lmf4"; depends=[assertthat DBI dbplyr dplyr purrr rlang RMySQL robustbase stringr tidyr]; }; wordcloud = derive2 { name="wordcloud"; version="2.6"; sha256="0j96yyvm6bcrrpbdx4w26piqx44a0vbsr3px9cb4zk8a8da6jwak"; depends=[RColorBrewer Rcpp]; }; wordcloud2 = derive2 { name="wordcloud2"; version="0.2.1"; sha256="1a2q42bn65q4idxq0vxysyam16q6c18inxv4dqhfy0x52j8z9x6k"; depends=[base64enc htmlwidgets]; }; + wordgraph = derive2 { name="wordgraph"; version="0.1.0"; sha256="06q42sjdj7i680zqx66hsvrpmkrlcyxnvsk1lygnqhlv97ycl3vv"; depends=[dplyr ggplot2 ggraph plyr purrr tibble tidygraph]; }; wordmatch = derive2 { name="wordmatch"; version="1.0"; sha256="0zscp361qf79y1zsliga18hc7wj36cnydshrqb9pv67b65njrznz"; depends=[plyr reshape2]; }; wordnet = derive2 { name="wordnet"; version="0.1-14"; sha256="12a21zlc7h973gi1632gngbk8b09vhp3sldh1mh9b5n6h18ga25p"; depends=[rJava]; }; wordspace = derive2 { name="wordspace"; version="0.2-6"; sha256="11y57mzd12klwd2xzr38nvlrxg9jsi33mxd8nnvc96hgrjsgwakl"; depends=[cluster iotools MASS Matrix Rcpp sparsesvd]; }; - workflowr = derive2 { name="workflowr"; version="1.6.1"; sha256="15am5qcscwfcg2b80ky3c72mkqmlibp49b76468q4x8pmkr3prwi"; depends=[callr fs getPass git2r glue httpuv httr knitr rmarkdown rprojroot rstudioapi stringr whisker yaml]; }; - workflows = derive2 { name="workflows"; version="0.1.1"; sha256="14lzbszz7ybfzqa5zw1hfh81b8rbwwyza6x8nhpnknl6x4adqfql"; depends=[cli ellipsis generics glue hardhat parsnip rlang]; }; - worldmet = derive2 { name="worldmet"; version="0.8.8"; sha256="0zanjlb2h10v4hss8w0p234k5yy3rnd1plzr9smiwn06fbmvy5zy"; depends=[doParallel dplyr foreach leaflet openair readr zoo]; }; + workflowr = derive2 { name="workflowr"; version="1.6.2"; sha256="0m3aq9xxbk4xmqsb59xil56610hgw53gm80z28mq594mhfdh0g3l"; depends=[callr fs getPass git2r glue httpuv httr knitr rmarkdown rprojroot rstudioapi stringr whisker xfun yaml]; }; + workflows = derive2 { name="workflows"; version="0.1.3"; sha256="1d5njd1xdl8kghlbar4acgl9hxq83p6k7yks592cvakmcz7f853m"; depends=[cli ellipsis generics glue hardhat parsnip rlang]; }; + worldmet = derive2 { name="worldmet"; version="0.9.0"; sha256="0wzp3c58kig5r1p2bb6c47z90ldyp18y6cjrsjbxs34i2v4nb6jc"; depends=[doParallel dplyr foreach leaflet openair readr tidyr zoo]; }; worms = derive2 { name="worms"; version="0.2.2"; sha256="183chjdi5qvsmdznvc9igcxaz769a37rwh5nzgvf5zf012a85wir"; depends=[httr plyr]; }; - worrms = derive2 { name="worrms"; version="0.4.0"; sha256="0nb02k0aimf6z1fw4y5qzja4xwgwff7gdzh364w2lrhj8imcb044"; depends=[crul data_table jsonlite tibble]; }; + worrms = derive2 { name="worrms"; version="0.4.2"; sha256="1gpbyplfpcrapmci8axarrjjijsgh2dmhnsn79g1lhrafvm2ichs"; depends=[crul data_table jsonlite tibble]; }; wosr = derive2 { name="wosr"; version="0.3.0"; sha256="0fl9mizrjg3r7n7gslsxgaw3k2v63scqmvnv6341q8sq7018hzln"; depends=[httr jsonlite pbapply xml2]; }; wpp2008 = derive2 { name="wpp2008"; version="1.0-1"; sha256="0gd3vjw1fpzhp3qlf1jpc24f76i0pxsjs5pb1v3k2si6df7q4msd"; depends=[]; }; wpp2010 = derive2 { name="wpp2010"; version="1.2-0"; sha256="1h87r1cn4lnx80dprvawsyzfkriscqjgr27gvv7n19wvsx8qd57k"; depends=[]; }; @@ -15398,17 +15983,18 @@ in with self; { wppExplorer = derive2 { name="wppExplorer"; version="2.3-4"; sha256="1pbmjg6y543aih8mxf9njfwpm090virhgqf8w0a5yx0jdfjwmz04"; depends=[DT ggplot2 googleVis Hmisc plyr reshape2 shiny shinyjs shinythemes wpp2019]; }; wql = derive2 { name="wql"; version="0.4.9"; sha256="0m16l807mhcjkbqhlzhc24pw4hl78fjyykiszlg337x3qs803fg2"; depends=[ggplot2 reshape2 zoo]; }; wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; - wrMisc = derive2 { name="wrMisc"; version="1.2.0"; sha256="1fv4bmzi00492s8mln79dsyil7phrrhkd028nc6zi050ssy9ggsi"; depends=[MASS]; }; - wrProteo = derive2 { name="wrProteo"; version="1.0.0"; sha256="110rpwac6hccv8i55fdw3mzd500jip1ldzmqw4196igq61cd9m20"; depends=[limma wrMisc]; }; + wrGraph = derive2 { name="wrGraph"; version="1.0.2"; sha256="1agi16ybn1nh0y2k8sfi3ns5iy0w5mmrp60vpk1k47z0859yg724"; depends=[RColorBrewer wrMisc]; }; + wrMisc = derive2 { name="wrMisc"; version="1.3.0"; sha256="0fsrq7ypv2y637g7sqwg0xjdbqn97m71ff0h0b06wbpkr91z2wja"; depends=[MASS]; }; + wrProteo = derive2 { name="wrProteo"; version="1.1.3"; sha256="1lyq650770xfhb4jkn14qshy45fy9j3vmqdbdss1g9v7d33hl21n"; depends=[knitr limma rmarkdown wrMisc]; }; wrangle = derive2 { name="wrangle"; version="0.5.2"; sha256="1b6qgwdjvwbrarp9ylgkb5ia1p5a5g7ws0jyqrwc6hii8z5yj2qb"; depends=[dplyr lazyeval magrittr rlang tidyr]; }; - wrapr = derive2 { name="wrapr"; version="2.0.0"; sha256="15171m6bljlmbzds24sy5z8spx8la5ahg1i49i8yghymkp6vvslw"; depends=[]; }; + wrapr = derive2 { name="wrapr"; version="2.0.2"; sha256="01yjrzz7nkp3a4w3171lpmyysl3apb5fmwy3dg98l1f03mkhk5za"; depends=[]; }; wrassp = derive2 { name="wrassp"; version="0.1.9"; sha256="09z8s0g6l9z4rwnf36w4bd734agd471swz3f24178b4j6m05kqhm"; depends=[tibble]; }; write_snns = derive2 { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; }; - writexl = derive2 { name="writexl"; version="1.2"; sha256="09fhdip6igcg97fjx4c7727cx2lb49l4d74l4i8rg2bag2s5lrj3"; depends=[]; }; - wrswoR = derive2 { name="wrswoR"; version="1.1"; sha256="0jnb818xz841bx2i03k3hhy4hxcwpxblskg9nrc8kgbc22rxx4lz"; depends=[logging Rcpp]; }; - wrswoR_benchmark = derive2 { name="wrswoR.benchmark"; version="0.2"; sha256="0vzs2lqq48kzk63xz2k9b7qcy0ph5yyvih6z98jfz36kpdfhdps9"; depends=[curl lazyeval]; }; + writexl = derive2 { name="writexl"; version="1.3"; sha256="0lah0r2pd996s0vdbi614j3h52dbxmifha6f19v53p2b7fr32wjd"; depends=[]; }; + wrswoR = derive2 { name="wrswoR"; version="1.1.1"; sha256="1q0nc08q8f3kl9yvcivzylykk1ar5j5dw3ian2y9nrzgzri5l10i"; depends=[logging Rcpp]; }; + wrswoR_benchmark = derive2 { name="wrswoR.benchmark"; version="0.2.1"; sha256="0zr6x8d69n72xlad7fw3sa9rqqpii9lylm1rlccrmalhgmzl68ii"; depends=[curl lazyeval]; }; wru = derive2 { name="wru"; version="0.1-9"; sha256="0xrm3f1khggcvdzzk65mnbfcyji3kjz8hrk9d2n4y15nhpbw8p8h"; depends=[devtools]; }; - wsbackfit = derive2 { name="wsbackfit"; version="1.0-2"; sha256="0whid2c5lzq4ahciky35mdbgkbp75gsdbf5fps954h5am3dlglhz"; depends=[]; }; + wsbackfit = derive2 { name="wsbackfit"; version="1.0-3"; sha256="06y868c04sbcrfm6ba33j1y8yjri3yjblzl0cicjrkjk34mi9j4g"; depends=[]; }; wskm = derive2 { name="wskm"; version="1.4.40"; sha256="0x5nc3bwqawx0k95v088dsx83dm7lw5lkryjvq6bl57bgrcn7n0l"; depends=[fpc lattice latticeExtra]; }; wsrf = derive2 { name="wsrf"; version="1.7.17"; sha256="0gmlvfcy2iqa5sqhwps3hx0hl9fir8nf5xq62f25sn8i3llw752z"; depends=[Rcpp]; }; wsyn = derive2 { name="wsyn"; version="1.0.2"; sha256="0jl0wnw11yrbiygcpcnl1yi8xf5dd3sbh0c2yic8dc0p64k6iass"; depends=[fields MASS]; }; @@ -15416,7 +16002,7 @@ in with self; { wux = derive2 { name="wux"; version="2.2-1"; sha256="0iw0kf0wfspnpc83v7gxhcakmp0z34cccnm0jn9c2za9ay9l2swv"; depends=[abind class corpcor fields gdata Hmisc ncdf4 reshape rgdal rgeos rworldmap sp stringr]; }; wv = derive2 { name="wv"; version="0.1.1"; sha256="06xf3c97pjhln1v31waj8rmp4r0y2kp6v2x10pbpvi8m0nf5zfs1"; depends=[coda Rcpp RcppArmadillo simts]; }; wvtool = derive2 { name="wvtool"; version="1.0"; sha256="0x9awj6g5lzqp2lhwgh9ib7jmfdzyhwazrjvw1vwacqqfhbz8qxv"; depends=[]; }; - wwntests = derive2 { name="wwntests"; version="1.0.0"; sha256="1wsqbhsnzkishqwxz5kjcb5xawafizi3ip4yzxj05p9rx9wja1yc"; depends=[ftsa MASS rainbow sde]; }; + wwntests = derive2 { name="wwntests"; version="1.0.1"; sha256="1algk2f55dg526zjw2ycfx2dq13m3lvfs75444iyp8fvq7j3wbcs"; depends=[ftsa MASS rainbow sde]; }; wyz_code_metaTesting = derive2 { name="wyz.code.metaTesting"; version="1.1.12"; sha256="17fmbym4kxxnygn91da2crxsq8kqh6sj5pzm197l202av0r9pvjd"; depends=[crayon data_table lubridate tidyr wyz_code_offensiveProgramming]; }; wyz_code_offensiveProgramming = derive2 { name="wyz.code.offensiveProgramming"; version="1.1.18"; sha256="14wk0hjysz8ravwsmiki7dyllkbygq0l5mg516rbbf0wfq5zl7nl"; depends=[crayon data_table lubridate R6 stringr tidyr]; }; wyz_code_rdoc = derive2 { name="wyz.code.rdoc"; version="1.1.16"; sha256="1f8yd1pkk9aamsx2x59jpa5jgq03hnbf9zrs1ah010sn3l51v1yr"; depends=[crayon data_table digest R6 stringr tidyr wyz_code_offensiveProgramming]; }; @@ -15427,23 +16013,25 @@ in with self; { x13binary = derive2 { name="x13binary"; version="1.1.39-2"; sha256="1if8yayvn6rr98gwp0ypmlk3d9fjf0b9kxir2iwha506aslq70xp"; depends=[]; }; x3ptools = derive2 { name="x3ptools"; version="0.0.2"; sha256="1a3vdljd51kvd70mq9cr84r536zmby7vkd36a02z2sxabq03cl9s"; depends=[assertthat digest png rgl xml2 zoo]; }; xLLiM = derive2 { name="xLLiM"; version="2.1"; sha256="1q6ryw9z5wi0amv5f4drz14p36zy8gc2a0s59q10jixhhyas7ycl"; depends=[abind capushe corpcor igraph MASS Matrix]; }; + xROI = derive2 { name="xROI"; version="0.9.17"; sha256="1yidrfqgz4sd8jpq7a4hvcjh7npbg54xnzxjmn8pdgrlzv71dyib"; depends=[colourpicker data_table jpeg lubridate moments raster RCurl rgdal rjson shiny shinyjs sp stringr tiff]; }; xRing = derive2 { name="xRing"; version="0.1.0"; sha256="17f1jif8yw2508k86p8mjgw1h20ml5wzaff04ix9xq96plqzi8ma"; depends=[dplR imager tcltk2 tkRplotR]; }; - xSub = derive2 { name="xSub"; version="2.0.2"; sha256="00mahp8fi6iskjaf5nwka67a7hqb3i08j8yrd4d2av39zfs268h2"; depends=[countrycode haven RCurl]; }; + xSub = derive2 { name="xSub"; version="3.0.1"; sha256="0c3jc801pn85wm17jj911spryg6p3gq19im1506zkv8lqwsy1nab"; depends=[countrycode haven RCurl]; }; xVA = derive2 { name="xVA"; version="0.8.1"; sha256="0wr4i37sya5gg6v63ka16g9077gxbhvjqyqfaahhban8skzl2adf"; depends=[SACCR Trading]; }; xaringan = derive2 { name="xaringan"; version="0.16"; sha256="1jdj8qkadb09x7kvf93h4mp8gxk6lda8aspldhdki9qqpdc78gc8"; depends=[htmltools knitr rmarkdown servr xfun]; }; + xaringanthemer = derive2 { name="xaringanthemer"; version="0.3.0"; sha256="0vb4z4w90fpdxxq46z089g4dh7r8jk73mcd63rxwnqaaqr09pxr4"; depends=[colorspace glue purrr whisker]; }; xbreed = derive2 { name="xbreed"; version="1.0.1.1"; sha256="032i04ginyf9dyabfkygnhrkq7lqdvvyw7s41vjimy2kvjrnkkkx"; depends=[BGLR]; }; xdcclarge = derive2 { name="xdcclarge"; version="0.1.0"; sha256="1j8wsidwmfjygqlwavxinv4bqc6rddy42jdmlknsjfrrs49yj8kn"; depends=[nlshrink Rcpp RcppArmadillo]; }; xergm_common = derive2 { name="xergm.common"; version="1.7.8"; sha256="03mjpafwfkmyj5ba84jydap9rp0i602izjlbd511xbxcw6dx2k0b"; depends=[ergm network]; }; xesreadR = derive2 { name="xesreadR"; version="0.2.3"; sha256="1pvdx0mxg2f885bhy4hb3kqzcgva4q7hzzaipkfzyi5lnjdsbc81"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; }; - xfun = derive2 { name="xfun"; version="0.13"; sha256="03iyqgx9mmdbd3qih70qzijjqcdg7k7ps5r1y6q8praanx9qvnm3"; depends=[]; }; + xfun = derive2 { name="xfun"; version="0.16"; sha256="1x7b71xhbl44fyccz69l24nbgyxawm2km90s4h1l3zr5z2vly0sg"; depends=[]; }; xgb2sql = derive2 { name="xgb2sql"; version="0.1.2"; sha256="1gw5dw0ck5hip8mv347zaswrggk395bg2hgn02bvqs0d31jhmgvi"; depends=[data_table xgboost]; }; - xgboost = derive2 { name="xgboost"; version="1.0.0.2"; sha256="1ld2w51c5fy3bl0kvjn1iplffc4lmin9s9zz5xx7xsm44d6j6kzd"; depends=[data_table magrittr Matrix stringi]; }; + xgboost = derive2 { name="xgboost"; version="1.1.1.1"; sha256="13njhcxljhbcs37ni6r5174fk8kx9b5p7rlw1an1ak3w92jn56cq"; depends=[data_table magrittr Matrix stringi]; }; xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; }; xgxr = derive2 { name="xgxr"; version="1.0.9"; sha256="1hci16ly4wzrjyfa7chwn6nnwlfnq77ix2w3gwrvlgfcjisbcsq1"; depends=[assertthat binom dplyr ggplot2 labeling magrittr pander png scales tibble]; }; - xhmmScripts = derive2 { name="xhmmScripts"; version="1.1"; sha256="1qryyb34jx9c64l8bnwp40b08y81agdj5w0icj8dk052x50ip1hl"; depends=[gplots plotrix]; }; xkcd = derive2 { name="xkcd"; version="0.0.6"; sha256="1z2y0ihn68ppay7xkglhw7djki5654g6z4bbpyy41if57z9q554f"; depends=[extrafont ggplot2 Hmisc]; }; xkcdcolors = derive2 { name="xkcdcolors"; version="1.0"; sha256="07fnjv01r3b951dqca2zs9b9f6hsgbpbpsrggvb8rps53kpid0i7"; depends=[FNN]; }; xlink = derive2 { name="xlink"; version="1.0.1"; sha256="02ahgjampy92gcwhv269px5w8651a7j50dn1295zwqxj44lk4g9q"; depends=[survival]; }; + xlsimple = derive2 { name="xlsimple"; version="1.0.5"; sha256="1snamzq6yljiqakqd6492ylznr9kfl8w0lnaayfn14fk3w03skck"; depends=[XLConnect]; }; xlsx = derive2 { name="xlsx"; version="0.6.3"; sha256="0ph3bqngczm2h46s159s6cpxjkcrsi1di8a325x2wl5ls7mbiag5"; depends=[rJava xlsxjars]; }; xlsx2dfs = derive2 { name="xlsx2dfs"; version="0.1.0"; sha256="0bdawr80grks91sy221d33fsk75g20zh3wjg6gvd0zj0m1zvvwvd"; depends=[openxlsx]; }; xlsxjars = derive2 { name="xlsxjars"; version="0.6.1"; sha256="1rka5smm7yqnhhlblpihhciydfap4i6kjaa4a7isdg7qjmzm3h9p"; depends=[rJava]; }; @@ -15451,30 +16039,32 @@ in with self; { xlutils3 = derive2 { name="xlutils3"; version="0.1.0"; sha256="1cxishi62bd36zlsy5qhzix1p68akdf9kpjg9gfm9aqpcijzccb9"; depends=[magrittr readxl]; }; xmeta = derive2 { name="xmeta"; version="1.1-5"; sha256="1r2mqrrcl7vmbyydw3kzpskinkiqr919bxgq69i1y6pbfim7jzag"; depends=[aod glmmML metafor mvmeta numDeriv]; }; xml2 = derive2 { name="xml2"; version="1.3.2"; sha256="1kx400v62xkd5xal7rzz7jcarz94ac8g1sh4i2dqr78qwgkzj8nz"; depends=[]; }; + xml2relational = derive2 { name="xml2relational"; version="0.1.0"; sha256="03blvks4z7n4wxz5zbrn6c3a3l4hy9clcjpb834pc07ssz3c2v3g"; depends=[fs lubridate rlang stringr tidyr xml2]; }; xmlparsedata = derive2 { name="xmlparsedata"; version="1.0.3"; sha256="0gjr3l5z5dp276lchr2649as1rkj56d2mlvbr66yg393zzw50lsh"; depends=[]; }; + xmlr = derive2 { name="xmlr"; version="0.1.2"; sha256="00mxdb4899sx5py0ngzh3dvhz1sqsar2hmsrkm4jf0b3q9psc86w"; depends=[]; }; xmlrpc2 = derive2 { name="xmlrpc2"; version="1.1"; sha256="13rfw0civp3hzi4hn31x1idliid1qb73495x4c31z5msd35lzxrs"; depends=[base64enc curl xml2]; }; - xmrr = derive2 { name="xmrr"; version="1.0.36"; sha256="0xxi8z9sp156508y5a7f4ax8yry7lg4qmn0hyk04dn1xr7syd4gs"; depends=[dplyr ggplot2 tidyr]; }; + xmrr = derive2 { name="xmrr"; version="1.1.1"; sha256="1kb4kzxb9rcx9fp1answln0sv9c3wdrk82gz79k0i9ypq7dls2ah"; depends=[dplyr ggplot2 purrr qpdf rlang tibble tidyr]; }; xnet = derive2 { name="xnet"; version="0.1.11"; sha256="18lda1gv53awsbkk5p4bzrbilndgybdz8xc6lhl6wy647fw9q9hv"; depends=[]; }; xoi = derive2 { name="xoi"; version="0.69-2"; sha256="1582flnh76fmqx5v1rzf021hlrcg53f2fdax1a8ad1nrcjpbj18r"; depends=[qtl]; }; xopen = derive2 { name="xopen"; version="1.0.0"; sha256="1vrvgdika1d63dwygynbv2wmd87ll8dji5dy89hj576n8hw601z2"; depends=[processx]; }; - xpectr = derive2 { name="xpectr"; version="0.3.0"; sha256="1v3hhih99f0bckjr0jv6pwp0iil4996981ix7nr1b5p4j7pf69ac"; depends=[checkmate clipr dplyr lifecycle plyr rlang rstudioapi testthat tibble withr]; }; - xplain = derive2 { name="xplain"; version="0.2.1"; sha256="01hl9dxiqqxzdixqccga0sywlhv97pi1l51r9sr7v106s7q11jxn"; depends=[RCurl readr XML]; }; + xpectr = derive2 { name="xpectr"; version="0.4.0"; sha256="1vdw01x1wmln8y6hfnqdy3frn1bbfzrqjbrvv3dmp23hq98yxxbq"; depends=[checkmate clipr dplyr fansi lifecycle plyr rlang rstudioapi testthat tibble withr]; }; + xplain = derive2 { name="xplain"; version="0.2.2"; sha256="152a83ckmhns6yniy87mmjva5bkv5x3phv63l1kkcmrr9bclfgz0"; depends=[httr RCurl readr XML]; }; xplorerr = derive2 { name="xplorerr"; version="0.1.1"; sha256="17h8z9rmqkmm6lm9gipa33mr7zxpzd5xbjk251592mwr79lwsh8n"; depends=[magrittr shiny]; }; - xpose = derive2 { name="xpose"; version="0.4.8"; sha256="0dc9ywkkb98fyp4j1gak4jrnmgcvx9hpf5ixspxaqb4aqqgqnjcs"; depends=[dplyr ggforce ggplot2 purrr readr rlang stringr tibble tidyr vpc]; }; - xpose_nlmixr = derive2 { name="xpose.nlmixr"; version="0.1.5"; sha256="05fb453ayzrscha0153gx8axdqgml3zq5cacp440f9a66nv2dwfi"; depends=[crayon dplyr ggplot2 magrittr nlme nlmixr stringr tibble tidyr vpc xpose]; }; + xpose = derive2 { name="xpose"; version="0.4.11"; sha256="1m5h7la7zr28q2610c7wadzwllyywya2vxa7pifjs3fml940lybj"; depends=[dplyr ggforce ggplot2 purrr readr rlang stringr tibble tidyr vpc]; }; xpose4 = derive2 { name="xpose4"; version="4.7.0"; sha256="0lpbk85d17spg6vwf7acqaz7fv2l0rv6qkczbgm4fw28qiaykci6"; depends=[dplyr gam Hmisc lattice lazyeval readr survival]; }; xptr = derive2 { name="xptr"; version="1.1.3"; sha256="0352vs8dz61hgpwnf3r9r9haz3adg2wk9qxzrv313p1fcyfjz91v"; depends=[]; }; xray = derive2 { name="xray"; version="0.2"; sha256="1ibj92ljlj8a5rmbrci691yhpd4kwrfyl944nzl2dcbf58l01dzq"; depends=[dplyr foreach ggplot2 lubridate scales]; }; - xrf = derive2 { name="xrf"; version="0.1.2"; sha256="0mcyjw75f2w3hvx1r6lhc4yidmih2z6dfmkxvywm499whk2pcqhv"; depends=[dplyr fuzzyjoin glmnet Matrix rlang xgboost]; }; + xrf = derive2 { name="xrf"; version="0.2.0"; sha256="0hzplp2rbsbnmqpvf7ycjzbyf59iabzsppf13xwypdjxyr7f910l"; depends=[dplyr fuzzyjoin glmnet Matrix rlang xgboost]; }; xrnet = derive2 { name="xrnet"; version="0.1.7"; sha256="136aadrvsdg9hizjg4q12h56ih0s3w88j3jpfb54ajgdmqw3pldi"; depends=[BH bigmemory foreach Rcpp RcppEigen]; }; xseq = derive2 { name="xseq"; version="0.2.1"; sha256="0bsakbfvkfv39q2ch2g21b17g84470sq4v73355cljlshsi6404i"; depends=[e1071 gptk impute preprocessCore RColorBrewer sfsmisc]; }; - xslt = derive2 { name="xslt"; version="1.4.1"; sha256="1gpqap5i2xabr9yrrkyr8kzzgqzpk6d6mgp4rqbkjdn77hs24krd"; depends=[Rcpp xml2]; }; + xslt = derive2 { name="xslt"; version="1.4.2"; sha256="08iw0s1b8fcsw3hqzxc4mxfbw121c7ajf05nr6gbj996sr033qqr"; depends=[Rcpp xml2]; }; xsp = derive2 { name="xsp"; version="0.1.2"; sha256="1jbmxa234v52qji8sz4bkg24c2n65b0zh9py1wyyfzw9n1wx5w0r"; depends=[ggplot2 reshape2]; }; xspliner = derive2 { name="xspliner"; version="0.0.4"; sha256="1j3wlw39r3ahhdfq3rks1zhnlmz14f4wk7bl7gf94yffasqg6k2r"; depends=[dplyr ggplot2 magrittr mgcv pdp pROC purrr tidyr]; }; xtable = derive2 { name="xtable"; version="1.8-4"; sha256="077xfm0gphvhsay75amd9v90zk57kjgrrlgih04fyrbqqblc1gjs"; depends=[]; }; xtal = derive2 { name="xtal"; version="1.15"; sha256="1zq3vd5x3vw6acn47yd2x7kflr9sm3znmdkm68cs64ha54jbl3vs"; depends=[]; }; xtensor = derive2 { name="xtensor"; version="0.11.1-0"; sha256="1l9216z46m45vnc69j4qx336ln82qgpagi5m9qa5pabvcpz9b23p"; depends=[Rcpp]; }; xtermStyle = derive2 { name="xtermStyle"; version="3.0.5"; sha256="1q4qq8w4sgxbbb1x0i4k5xndvwisvjszg830wspwb37wigxz8xvz"; depends=[]; }; + xtreg2way = derive2 { name="xtreg2way"; version="1.0.0"; sha256="0wllz0frakmadavgpqhd2b8fiw6wgwh5wzd270czc6cm5bq9gfng"; depends=[MASS Matrix pracma]; }; xts = derive2 { name="xts"; version="0.12-0"; sha256="0q4cc8ynp7ndmgll1jj3lxyl6wmgg89ad3wq09kjc2ngszdfc4fz"; depends=[zoo]; }; xtune = derive2 { name="xtune"; version="0.1.0"; sha256="0bpf1cx7v7q0a1jip04xd0bjg9ilagrf7wg7a9y0m6wgw7s2b9jn"; depends=[glmnet selectiveInference]; }; xwf = derive2 { name="xwf"; version="0.2-3"; sha256="1byj6vjk2abm9j919107xsa3nd40zbsvxaldvv4ml3c47k1fg3kc"; depends=[mgcv]; }; @@ -15486,24 +16076,24 @@ in with self; { yager = derive2 { name="yager"; version="0.1.0"; sha256="01gxpaf4wvii056xn84m9gkq46m7hxqgg5f2frakhgnlpm3afgfb"; depends=[lhs MLmetrics randtoolbox]; }; yakmoR = derive2 { name="yakmoR"; version="0.1.1"; sha256="09aklz79s0911p2wnpd7gc6vrbr9lmiskhkahsc63pdigggmq9f7"; depends=[BBmisc checkmate Rcpp]; }; yaml = derive2 { name="yaml"; version="2.2.1"; sha256="10r7g26x73am45niigm3k466030nymnr3v3fjljafzrr5aybf58i"; depends=[]; }; - yamlet = derive2 { name="yamlet"; version="0.4.6"; sha256="1113iid1iiz7rnsz7v5r95rdwnq9zdiwa8q4805vb3sjjk531kqq"; depends=[csv dplyr encode ggplot2 rlang spork units xtable yaml]; }; + yamlet = derive2 { name="yamlet"; version="0.4.8"; sha256="1p6p20lpagm62xfkvhy1fya3ypxbpza29gmls63a3ry2nir8zadp"; depends=[csv dplyr encode ggplot2 rlang spork units xtable yaml]; }; yap = derive2 { name="yap"; version="0.1.0"; sha256="12cagxisky7aq04ab9ycd4mp7xfs7z0v3rc2sczcngn2pc8pdjm7"; depends=[lhs randtoolbox]; }; - yardstick = derive2 { name="yardstick"; version="0.0.6"; sha256="1qkvbvc0cnwl5mkk47swnd8by84zz0qpy1996fziapn35qxvx9qa"; depends=[dplyr generics pROC Rcpp rlang tidyselect]; }; + yardstick = derive2 { name="yardstick"; version="0.0.7"; sha256="1yrvlhn4gxyn9f20z5yv3xam0j0a8z362jwa32r33r0g0jk5z2fq"; depends=[dplyr generics pROC rlang tidyselect]; }; yarr = derive2 { name="yarr"; version="0.1.2"; sha256="16q109jrydckz7s1rkmr2sh8q92cgr1c534fvpbh3h0bc3fvvf8g"; depends=[]; }; yarrr = derive2 { name="yarrr"; version="0.1.5"; sha256="1258bj7x4icaxfabnnd3fgwydnqbzxkih7zw0sdlwdax3q8fw5c5"; depends=[BayesFactor circlize jpeg]; }; yasp = derive2 { name="yasp"; version="0.2.0"; sha256="0fza8h9y1wmarsmjcvw4r970d6j4ii795pd2h4xh9nlsirv50adi"; depends=[]; }; yatah = derive2 { name="yatah"; version="0.1.0"; sha256="0ayy0h399g3csn106vvq6j4h6w0sgzw33b7gj1hk05nc8hdzrmna"; depends=[ape purrr stringr]; }; ycinterextra = derive2 { name="ycinterextra"; version="0.1"; sha256="0hr37izbbmxqkjy6a7q8vcn0vs8an1ck9y8xfjpl5z0rygi8xc1v"; depends=[mcGlobaloptim]; }; - yesno = derive2 { name="yesno"; version="0.1.1"; sha256="10saf2s3argpxgny2av5mm021nx09302rvr29887a7mvm5662kl2"; depends=[]; }; - yhat = derive2 { name="yhat"; version="2.0-0"; sha256="0vdhkknmms7zy7iha894jn1hr1h5w67pr53r0q67m7p404w21iza"; depends=[boot miscTools plotrix yacca]; }; + yesno = derive2 { name="yesno"; version="0.1.2"; sha256="1n9v8m1wkk9p2ahl7d1khbffxmshv68q1v44v04y4v1k6qjvm0i2"; depends=[]; }; + yhat = derive2 { name="yhat"; version="2.0-2"; sha256="09lxfqfr6zy4zxy1p5ragsrbnbbbn5a15l47chj65hqklbnmw6ag"; depends=[boot miscTools plotrix yacca]; }; yhatr = derive2 { name="yhatr"; version="0.15.1"; sha256="18g2cr1kjxnfw6cwzl62ynppfv1zz732kbx18zq8918l85kx6wbw"; depends=[httr jsonlite stringr]; }; ykmeans = derive2 { name="ykmeans"; version="1.0"; sha256="0xfji2fmslvc059kk3rwkv575ffzl787sa9d4vw5hxnsmkn8lq50"; depends=[foreach plyr]; }; yll = derive2 { name="yll"; version="1.0.0"; sha256="0lf3cd6pfzki29nk2iy0vd6v4dw6zlsbrjh2839zq5vlpiimsvck"; depends=[]; }; ymlthis = derive2 { name="ymlthis"; version="0.1.2"; sha256="01jfkf9ymj8p0gvcd491i7rfaw3mj101jqbkbxmwhv7rl4r2vmql"; depends=[crayon fs glue magrittr miniUI purrr rlang rmarkdown rstudioapi shiny shinyBS stringr usethis whoami withr yaml]; }; yonder = derive2 { name="yonder"; version="0.2.0"; sha256="1ilzn17w6skd0dhwxyrgnfzyazafp8hsi8q6pfxz6k16cd668mc0"; depends=[htmltools magrittr shiny]; }; - yorkr = derive2 { name="yorkr"; version="0.0.7"; sha256="035pmvignq4lip3y5670kxj1n70ff04yy2jwi4837pimr9d0qjhv"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; - youtubecaption = derive2 { name="youtubecaption"; version="0.1.3"; sha256="03xndrs28qlbr9bywbxxx110gsp0n36wqvf98ys7ypmlj6vki4ya"; depends=[dplyr magrittr purrr reticulate stringr tibble writexl]; }; - ypr = derive2 { name="ypr"; version="0.5.0"; sha256="1as8i61sc6xasjb36kcfhpac4180558qqyg862qxh5f1i4b77jm7"; depends=[chk ggplot2 lifecycle purrr scales yesno]; }; + yorkr = derive2 { name="yorkr"; version="0.0.9"; sha256="1yl6snk2qw8in4bd1gc32qzk10baqnwzxyamnyj7p39vqi8vr12p"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; + youtubecaption = derive2 { name="youtubecaption"; version="1.0.0"; sha256="15cafl7b03xrql2y2ayy6ajf6v764wym3xqs4pbzlf6ncy8qwl5r"; depends=[dplyr magrittr purrr reticulate stringr tibble writexl]; }; + ypr = derive2 { name="ypr"; version="0.5.1"; sha256="15544gyxzavbamjfjsiq662c9y2zkfxn14a481318358sdhln5vn"; depends=[chk ggplot2 lifecycle purrr scales yesno]; }; yuima = derive2 { name="yuima"; version="1.9.6"; sha256="1iqcv6m2lbdnpkcmgbmjhdn233pq3b2g6s9naiq3ks0fyv04zpar"; depends=[boot cubature expm glassoFast mvtnorm Rcpp RcppArmadillo zoo]; }; yuimaGUI = derive2 { name="yuimaGUI"; version="1.3.0"; sha256="1znwfkhnmv9m32izikziqpgxx8gpw50786r81va808x7q058cp5n"; depends=[DT ggplot2 ghyp plotly quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; }; yum = derive2 { name="yum"; version="0.0.1"; sha256="1q8yxn18nia7jh6g2016hxm81d2jak8pwylr6nai9kfynv9wri0g"; depends=[yaml]; }; @@ -15511,28 +16101,30 @@ in with self; { zCompositions = derive2 { name="zCompositions"; version="1.3.4"; sha256="15cfqk1vzamz66y9idnrwxlrp2sirkp44gwkcmia4s13x5pwh8mf"; depends=[MASS NADA truncnorm]; }; zFactor = derive2 { name="zFactor"; version="0.1.9"; sha256="1x0cfcmnmpb8dq6wn6538ghlz9cm00grv54dj91hvb09i96cp95x"; depends=[covr data_table dplyr ggplot2 knitcitations logging rootSolve tibble tidyr]; }; zTree = derive2 { name="zTree"; version="1.0.6"; sha256="1mywxrx6bw7dzhrdwyxbjzc8ikgvw423zycyji0jjr69cfhpmywv"; depends=[plyr]; }; - zalpha = derive2 { name="zalpha"; version="0.1.0"; sha256="12bzdsgjcpg2fqgygx0y6hyygd4yww2c7vpnxksgkgr0gscilksg"; depends=[]; }; + zalpha = derive2 { name="zalpha"; version="0.2.0"; sha256="0wyk4smrch5c0jnzi8z0in1hcbfsddgw4n28dljj917wyg5cnmqd"; depends=[]; }; zbank = derive2 { name="zbank"; version="0.1.0"; sha256="0vzvlri3sncvbz2cdg8wzlpskm1lq9ji0jrfy5cx4ib19m6gxhpc"; depends=[crul jsonlite tibble]; }; zcurve = derive2 { name="zcurve"; version="1.0.0"; sha256="14a07yn4wjj29kx33g7mnlsky0jg8zj1hs9r9hn0i0yv4jfdl5jl"; depends=[evmix nleqslv Rcpp Rdpack]; }; zeallot = derive2 { name="zeallot"; version="0.1.0"; sha256="1sd1igcfnv27pa3bqxlbyxchi562h7grnjg1l7wxx3bwr49i57s3"; depends=[]; }; zebu = derive2 { name="zebu"; version="0.1.2"; sha256="0f9fsb4z8s7k5jnz2ayd52dzri0z46kjbm0gi5rfqjlmk13bhgk4"; depends=[foreach ggplot2 iterators plyr reshape2]; }; - zeitgebr = derive2 { name="zeitgebr"; version="0.3.3"; sha256="1g2bqc1xx42q54i6ck0ihpxkzw3hmxqn3cvv416afjc0cm45zw8d"; depends=[behavr data_table lomb pracma]; }; + zeitgebr = derive2 { name="zeitgebr"; version="0.3.5"; sha256="1h2zx3ah1xdyyag40ragrv7gvpnlzqmappbnjp971dn9khqdxfqs"; depends=[behavr data_table lomb pracma WaveletComp]; }; zen4R = derive2 { name="zen4R"; version="0.3"; sha256="029wjw0bay9p4fgd4rnmqzhrpn5q2azx0w9fvlr4mcsnwzjk9kib"; depends=[httr jsonlite R6 rvest xml2]; }; zendeskR = derive2 { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; }; zeroEQpart = derive2 { name="zeroEQpart"; version="0.1.0"; sha256="1n24nqyl0irpyspwx4b73xy228a84aa8zsn9fcf2lrlni5vyzmm0"; depends=[MASS ppcor]; }; - zetadiv = derive2 { name="zetadiv"; version="1.1.1"; sha256="0laxp2pd5s0s9wcnvs1r4shid2gi8ap4y9py6gpl207ywq6cxmgz"; depends=[car glm2 Imap mgcv nnls scam vegan]; }; + zetadiv = derive2 { name="zetadiv"; version="1.2.0"; sha256="0068k5i0dvii3dckgis5424xb7sqqq9s670vgfavc0vncnlycxqk"; depends=[car glm2 Imap mgcv nnls scam vegan]; }; zfa = derive2 { name="zfa"; version="1.0"; sha256="0lddwpifkzggzvy56ans5pfknfr8laxcg264f3ph2z150gw1plsh"; depends=[SKAT]; }; + zfit = derive2 { name="zfit"; version="0.1.0"; sha256="0r6qdygpqd06vmfvj68ksxm3bz0jgalczr6rngcr4xl2mkb1cn38"; depends=[magrittr]; }; zic = derive2 { name="zic"; version="0.9.1"; sha256="1vd64ljigf6iwgzlgdxgj65nlwir176h7ddznddpaz2abh6n6zwp"; depends=[coda Rcpp RcppArmadillo]; }; - zip = derive2 { name="zip"; version="2.0.4"; sha256="1c02amk3pl6xir5jnbfiwiv2wvpkpbkkb1w71y6lf2yk7g3d0pdb"; depends=[]; }; + zip = derive2 { name="zip"; version="2.1.0"; sha256="1dfsagb7bx35x4zx6f5xk2sk057fbyhskkpw3w72b805cjw920da"; depends=[]; }; zipR = derive2 { name="zipR"; version="0.1.1"; sha256="1aaw3dslhsw3zgxvkc1v60vsk44x64i4qmjwx0gq4f7dad1rbiqp"; depends=[]; }; - zipangu = derive2 { name="zipangu"; version="0.2.0"; sha256="104crb890jbbkhi06rgy5gnrm99cad12rhc38k3h547ws2yr2639"; depends=[dplyr lifecycle lubridate magrittr purrr rlang stringi stringr tibble]; }; + zipangu = derive2 { name="zipangu"; version="0.2.1"; sha256="0jqr9byzdz6k0prdsr7d6yk0d8d412hplg9iclgfdx2cj1kk6w7r"; depends=[dplyr lifecycle lubridate magrittr purrr rlang stringi stringr tibble]; }; zipfR = derive2 { name="zipfR"; version="0.6-66"; sha256="0fjqa9a4z2p21ywy8h3pg0gwq4gwzjnrl78kn1nswly3w637574h"; depends=[]; }; - zipfextR = derive2 { name="zipfextR"; version="1.0.1"; sha256="14p17xxnpnvvinbgjkfxjcmipfanj6vabfh8bzw78k30rl7bj32b"; depends=[copula tolerance VGAM]; }; + zipfextR = derive2 { name="zipfextR"; version="1.0.2"; sha256="03rlvvw7rfbhsbwd5njmgkkkrxq1lgjdydmpkn6h1hi97pc0gbhh"; depends=[copula tolerance VGAM]; }; ziphsmm = derive2 { name="ziphsmm"; version="2.0.6"; sha256="0lm6m2g9jd1v7gxv4viych8c59phbvz1yly1ydgajl8q251d8n87"; depends=[pracma Rcpp RcppArmadillo]; }; zoeppritz = derive2 { name="zoeppritz"; version="1.0-7"; sha256="14j9jl2g7gn94nzs96mwsgwlxnfbr1crjfmfwbi3rk367xi197jb"; depends=[]; }; zoib = derive2 { name="zoib"; version="1.5.4"; sha256="10hv5li1l9gm1bl3k3c9qcmzkqa4ri0kccrsgw1mn8ddn11g9m0a"; depends=[abind coda Formula matrixcalc rjags]; }; zoltr = derive2 { name="zoltr"; version="0.5.1"; sha256="12zh7y3pwidclscgvd0b0iaqq9j5y8mc8xd6pz4vs0jy5qs3ahar"; depends=[base64url dplyr httr jsonlite magrittr MMWRweek mockery readr rlang webmockr]; }; - zoo = derive2 { name="zoo"; version="1.8-7"; sha256="1w4542zs53bm261g95086a60576v334g1jrhnbgdqni4izf2s1wy"; depends=[lattice]; }; + zonator = derive2 { name="zonator"; version="0.6.0"; sha256="1plxchpd4ypp36phl13pi9yvlrqi3lk83lv5rldrhdqynhcgfw2k"; depends=[ggplot2 raster RColorBrewer reshape2 rgdal]; }; + zoo = derive2 { name="zoo"; version="1.8-8"; sha256="1rrw431jwaxd9xljp73f15rhcxvwc0xlyrmr0ghi5fj7a03c932f"; depends=[lattice]; }; zooaRch = derive2 { name="zooaRch"; version="1.2"; sha256="0grc378xppv0303sf4flfqz5002vq5a23nzbq4bsff41rww7dihc"; depends=[ggplot2]; }; zooaRchGUI = derive2 { name="zooaRchGUI"; version="1.0.2"; sha256="0snggx0d69ajz6xxwnv03l12jpjrjkpy2dgf4lrpm2l8rspd27i4"; depends=[car coda foreign geomorph ggplot2 MASS pgirmess raster readxl rjags sp spdep splancs tcltk2 tkrplot vegan]; }; zoocat = derive2 { name="zoocat"; version="0.2.0.1"; sha256="0rdjgf1gvnixqwxrnvzswb53yzcvjgvfkrms6d38bhfyw320kgdp"; depends=[plyr reshape2 scales zoo]; }; @@ -15541,6 +16133,7 @@ in with self; { zoon = derive2 { name="zoon"; version="0.6.5"; sha256="02y29vr2yn8al69km8faiqrwjrc1r3hsvw3dg8lwjr65cxw1krip"; depends=[dismo plyr randomForest raster RCurl rfigshare rgdal roxygen2 rworldmap sp testthat]; }; zscorer = derive2 { name="zscorer"; version="0.3.1"; sha256="0aijhs0fyird5gq68x4dxchb02mxa7ijk10k9zjhngghxbjj7iqn"; depends=[shiny]; }; ztable = derive2 { name="ztable"; version="0.2.0"; sha256="0g7khk5ifsdh9p31wlwh2l5mn1hzxzpv6qcn1wh34vsfjdmijjwy"; depends=[flextable magrittr moonBook officer RColorBrewer scales stringr]; }; + ztpln = derive2 { name="ztpln"; version="0.1.1"; sha256="18rbfdp22jaxg4nkqzj2393nhjdl1gzv4xhmr6aci76ymdixsfnl"; depends=[DistributionUtils mixtools Rcpp RcppEigen RcppNumerical]; }; ztype = derive2 { name="ztype"; version="0.1.0"; sha256="0brbq2rgkl4mhjbb70kkfv47lzs66k9ppfs2klavcbripirxn5fx"; depends=[assertthat dplyr ggplot2 lubridate magrittr rvest stringr]; }; zyp = derive2 { name="zyp"; version="0.10-1.1"; sha256="03cxpkfbhrx1fy8l0dl9a13ghz93cqq6877wa8rig09ksdiivaw9"; depends=[Kendall]; }; zzlite = derive2 { name="zzlite"; version="0.1.2"; sha256="0vi1slx2s4r5zf82lazqv0c3m12xq73wlgsbz6af4y00h0bkr3ps"; depends=[httr jsonlite]; }; diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 2d2839c0e00..dad01337f4a 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -230,7 +230,6 @@ let }; packagesWithNativeBuildInputs = { - abn = [ pkgs.gsl_1 ]; adimpro = [ pkgs.imagemagick ]; animation = [ pkgs.which ]; audio = [ pkgs.portaudio ]; @@ -281,7 +280,6 @@ let ncdf4 = [ pkgs.netcdf ]; nloptr = [ pkgs.nlopt pkgs.pkgconfig ]; odbc = [ pkgs.unixODBC ]; - outbreaker = [ pkgs.gsl_1 ]; pander = [ pkgs.pandoc pkgs.which ]; pbdMPI = [ pkgs.openmpi ]; pbdNCDF4 = [ pkgs.netcdf ]; @@ -293,8 +291,6 @@ let png = [ pkgs.libpng.dev ]; proj4 = [ pkgs.proj ]; protolite = [ pkgs.protobuf ]; - qtbase = [ pkgs.qt4 ]; - qtpaint = [ pkgs.qt4 ]; R2SWF = [ pkgs.zlib pkgs.libpng pkgs.freetype.dev ]; RAppArmor = [ pkgs.libapparmor ]; rapportools = [ pkgs.which ]; @@ -307,13 +303,12 @@ let reprex = [ pkgs.which ]; rgdal = [ pkgs.proj.dev pkgs.gdal ]; rgeos = [ pkgs.geos ]; - rggobi = [ pkgs.ggobi pkgs.gtk2.dev pkgs.libxml2.dev ]; Rglpk = [ pkgs.glpk ]; RGtk2 = [ pkgs.gtk2.dev ]; rhdf5 = [ pkgs.zlib ]; Rhdf5lib = [ pkgs.zlib ]; Rhpc = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.openmpi pkgs.pcre.dev ]; - Rhtslib = [ pkgs.zlib.dev pkgs.automake pkgs.autoconf ]; + Rhtslib = [ pkgs.zlib.dev pkgs.automake pkgs.autoconf pkgs.bzip2.dev pkgs.lzma.dev pkgs.curl.dev ]; rjags = [ pkgs.jags ]; rJava = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.pcre.dev pkgs.jdk pkgs.libzip ]; Rlibeemd = [ pkgs.gsl_1 ]; @@ -353,7 +348,6 @@ let TAQMNGR = [ pkgs.zlib.dev ]; tesseract = [ pkgs.tesseract pkgs.leptonica ]; tiff = [ pkgs.libtiff.dev ]; - TKF = [ pkgs.gsl_1 ]; tkrplot = [ pkgs.xorg.libX11 pkgs.tk.dev ]; topicmodels = [ pkgs.gsl_1 ]; udunits2 = [ pkgs.udunits pkgs.expat ]; @@ -371,10 +365,10 @@ let gmapR = [ pkgs.zlib.dev ]; Rsubread = [ pkgs.zlib.dev ]; XVector = [ pkgs.zlib.dev ]; - Rsamtools = [ pkgs.zlib.dev ]; + Rsamtools = [ pkgs.zlib.dev pkgs.curl.dev ]; rtracklayer = [ pkgs.zlib.dev ]; affyio = [ pkgs.zlib.dev ]; - VariantAnnotation = [ pkgs.zlib.dev ]; + VariantAnnotation = [ pkgs.zlib.dev pkgs.curl.dev ]; snpStats = [ pkgs.zlib.dev ]; }; @@ -391,12 +385,9 @@ let pbdZMQ = lib.optionals stdenv.isDarwin [ pkgs.darwin.binutils ]; RMark = [ pkgs.which ]; RPushbullet = [ pkgs.which ]; - qtpaint = [ pkgs.cmake ]; - qtbase = [ pkgs.cmake pkgs.perl ]; RcppEigen = [ pkgs.libiconv ]; RCurl = [ pkgs.curl.dev ]; R2SWF = [ pkgs.pkgconfig ]; - rggobi = [ pkgs.pkgconfig ]; rgl = [ pkgs.libGLU pkgs.libGLU.dev pkgs.libGL pkgs.xlibsWrapper ]; RGtk2 = [ pkgs.pkgconfig ]; RProtoBuf = [ pkgs.pkgconfig ]; @@ -458,9 +449,7 @@ let "AnthropMMD" "aplpack" "asbio" - "AtelieR" "BAT" - "bayesDem" "BCA" "betapart" "BiodiversityR" @@ -495,7 +484,6 @@ let "dynBiplotGUI" "EasyqpcR" "EcoVirtual" - "ENiRG" "exactLoglinTest" "fat2Lpoly" "fbati" @@ -505,7 +493,6 @@ let "FFD" "fgui" "fisheyeR" - "fit4NM" "forams" "forensim" "FreeSortR" @@ -518,15 +505,12 @@ let "GGEBiplotGUI" "gnm" "GPCSIV" - "GrammR" "GrapheR" "GroupSeq" "gsubfn" "GUniFrac" "gWidgets2RGtk2" "gWidgets2tcltk" - "gWidgetsRGtk2" - "gWidgetstcltk" "HH" "HiveR" "ic50" @@ -542,14 +526,10 @@ let "LS2Wstat" "MareyMap" "memgene" - "MergeGUI" "metacom" "Meth27QC" - "MetSizeR" - "MicroStrategyR" "migui" "miniGUI" - "MissingDataGUI" "mixsep" "MplusAutomation" "mpmcorrelogram" @@ -567,7 +547,6 @@ let "pez" "phylotools" "picante" - "PKgraph" "plotSEMM" "plsRbeta" "plsRglm" @@ -578,8 +557,6 @@ let "prefmod" "PrevMap" "ProbForecastGOP" - "qtbase" - "qtpaint" "r4ss" "RandomFields" "rareNMtests" @@ -598,7 +575,6 @@ let "RcmdrPlugin_KMggplot2" "RcmdrPlugin_lfstat" "RcmdrPlugin_MA" - "RcmdrPlugin_mosaic" "RcmdrPlugin_MPAStats" "RcmdrPlugin_orloca" "RcmdrPlugin_plotByGroup" @@ -616,16 +592,12 @@ let "RcmdrPlugin_UCA" "recluster" "relimp" - "RenextGUI" - "reshapeGUI" "rgl" "RHRV" "rich" "RNCEP" - "RQDA" "RSDA" "RSurvey" - "RunuranGUI" "simba" "Simile" "SimpleTable" @@ -662,13 +634,13 @@ let "vegan" "vegan3d" "vegclust" - "WMCapacity" "x12GUI" ]; packagesToSkipCheck = [ "Rmpi" # tries to run MPI processes "pbdMPI" # tries to run MPI processes + "data_table" # fails to rename shared library before check ]; # Packages which cannot be installed due to lack of dependencies or other reasons. @@ -723,8 +695,9 @@ let }); data_table = old.data_table.overrideDerivation (attrs: { - NIX_CFLAGS_COMPILE = attrs.NIX_CFLAGS_COMPILE - + lib.optionalString stdenv.isDarwin " -fopenmp"; + NIX_CFLAGS_COMPILE = attrs.NIX_CFLAGS_COMPILE + " -fopenmp"; + patchPhase = "patchShebangs configure"; + postInstall = "mv $out/library/data.table/libs/{data.table,datatable}.so"; }); ModelMetrics = old.ModelMetrics.overrideDerivation (attrs: { @@ -772,10 +745,6 @@ let ''; }); - qtbase = old.qtbase.overrideDerivation (attrs: { - patches = [ ./patches/qtbase.patch ]; - }); - Rmpi = old.Rmpi.overrideDerivation (attrs: { configureFlags = [ "--with-Rmpi-type=OPENMPI" @@ -828,6 +797,9 @@ let }); openssl = old.openssl.overrideDerivation (attrs: { + preConfigure = '' + patchShebangs configure + ''; PKGCONFIG_CFLAGS = "-I${pkgs.openssl.dev}/include"; PKGCONFIG_LIBS = "-Wl,-rpath,${pkgs.openssl.out}/lib -L${pkgs.openssl.out}/lib -lssl -lcrypto"; }); diff --git a/pkgs/development/r-modules/generate-r-packages.R b/pkgs/development/r-modules/generate-r-packages.R index 1586b5b16b3..df489cdcacb 100755 --- a/pkgs/development/r-modules/generate-r-packages.R +++ b/pkgs/development/r-modules/generate-r-packages.R @@ -3,7 +3,7 @@ library(data.table) library(parallel) cl <- makeCluster(10) -biocVersion <- 3.8 +biocVersion <- 3.11 snapshotDate <- Sys.Date()-1 mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/bioc/src/contrib/") diff --git a/pkgs/development/tools/agda-pkg/default.nix b/pkgs/development/tools/agda-pkg/default.nix index 0d93694b50f..7c4ddb8a688 100644 --- a/pkgs/development/tools/agda-pkg/default.nix +++ b/pkgs/development/tools/agda-pkg/default.nix @@ -4,13 +4,13 @@ with python3Packages; buildPythonApplication rec { pname = "agda-pkg"; - version = "0.1.50"; + version = "0.1.51"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "0wpw90kw3danw91m3jzfdn7zmclimmiz74f77mpij9b1w6wvhm11"; + sha256 = "ee370889a1558caf45930d9f898dbe248048078e1e7e3ee17382bf574dc795f2"; }; # Checks need internet access, so we just check the program executes diff --git a/pkgs/development/tools/analysis/cargo-tarpaulin/default.nix b/pkgs/development/tools/analysis/cargo-tarpaulin/default.nix index 48805d16808..099837fbafa 100644 --- a/pkgs/development/tools/analysis/cargo-tarpaulin/default.nix +++ b/pkgs/development/tools/analysis/cargo-tarpaulin/default.nix @@ -2,13 +2,13 @@ rustPlatform.buildRustPackage rec { pname = "cargo-tarpaulin"; - version = "0.14.3"; + version = "0.15.0"; src = fetchFromGitHub { owner = "xd009642"; repo = "tarpaulin"; rev = "${version}"; - sha256 = "03d8h5b174699yivaamlvaqzck9zs119jk29yf70dvxw7cs0nngv"; + sha256 = "0ga2zfq4365hxvr3wd3isc146ibivy3bfcy24rb6cq3av3b90a8k"; }; nativeBuildInputs = [ @@ -16,7 +16,7 @@ rustPlatform.buildRustPackage rec { ]; buildInputs = [ openssl ]; - cargoSha256 = "0zzp2wyq48j6n64fm37qfl65cg4yzf9ysichhkmkc6viq8x0f66d"; + cargoSha256 = "1ij1bic95315kba7k7igix33kmwr2va0c2hbysjs0bl5kcnai4f7"; #checkFlags = [ "--test-threads" "1" ]; doCheck = false; diff --git a/pkgs/development/tools/analysis/checkstyle/default.nix b/pkgs/development/tools/analysis/checkstyle/default.nix index 5dba30e7663..7e468f44b1a 100644 --- a/pkgs/development/tools/analysis/checkstyle/default.nix +++ b/pkgs/development/tools/analysis/checkstyle/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, makeWrapper, jre }: stdenv.mkDerivation rec { - version = "8.36"; + version = "8.36.2"; pname = "checkstyle"; src = fetchurl { url = "https://github.com/checkstyle/checkstyle/releases/download/checkstyle-${version}/checkstyle-${version}-all.jar"; - sha256 = "1f8g330akx3sdc35dgvy6kksr7y3dnnj7029qrpn745bd9fh92hh"; + sha256 = "05yb3020q0r75ggh0nm56yj45ha2ppyhbnjn34wqpadi842pzpfh"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/analysis/codeql/default.nix b/pkgs/development/tools/analysis/codeql/default.nix index e450bbefe24..811c2b2463f 100644 --- a/pkgs/development/tools/analysis/codeql/default.nix +++ b/pkgs/development/tools/analysis/codeql/default.nix @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { pname = "codeql"; - version = "2.2.5"; + version = "2.3.1"; dontConfigure = true; dontBuild = true; @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { src = fetchzip { url = "https://github.com/github/codeql-cli-binaries/releases/download/v${version}/codeql.zip"; - sha256 = "1x9crby4idkvfy6i5l0r00ixnx3ij68zjh1l5n92hyzlf0snv28d"; + sha256 = "1wbqccvj2a31b3h44rfanjrcv9gm4jl60a66mpxrbfjpmkd5hl35"; }; nativeBuildInputs = [ diff --git a/pkgs/development/tools/analysis/coz/default.nix b/pkgs/development/tools/analysis/coz/default.nix index 09bb44dc55f..42b47a9a8fd 100644 --- a/pkgs/development/tools/analysis/coz/default.nix +++ b/pkgs/development/tools/analysis/coz/default.nix @@ -49,7 +49,7 @@ stdenv.mkDerivation rec { meta = { homepage = "https://github.com/plasma-umass/coz"; - description = "Coz: Causal Profiling"; + description = "Profiler based on casual profiling"; license = stdenv.lib.licenses.bsd2; maintainers = with stdenv.lib.maintainers; [ zimbatm ]; }; diff --git a/pkgs/development/tools/analysis/cppcheck/default.nix b/pkgs/development/tools/analysis/cppcheck/default.nix index 8e2c28336cf..8858ac59ae6 100644 --- a/pkgs/development/tools/analysis/cppcheck/default.nix +++ b/pkgs/development/tools/analysis/cppcheck/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "cppcheck"; - version = "2.1"; + version = "2.2"; src = fetchurl { url = "mirror://sourceforge/${pname}/${pname}-${version}.tar.bz2"; - sha256 = "1xx5i6z9a36h7k4ipikrk2zidk7jcjv8ryqyq2m5hnwy0gpyw9mb"; + sha256 = "1dcf053cqci2ha3yy817y02yz9mhrkgddcbnn6gj82j6k87a4rq4"; }; buildInputs = [ pcre ] ++ stdenv.lib.optionals withZ3 [ z3 ]; diff --git a/pkgs/development/tools/analysis/flow/default.nix b/pkgs/development/tools/analysis/flow/default.nix index cc3ef8ed0f7..27675652eb8 100644 --- a/pkgs/development/tools/analysis/flow/default.nix +++ b/pkgs/development/tools/analysis/flow/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "flow"; - version = "0.133.0"; + version = "0.137.0"; src = fetchFromGitHub { owner = "facebook"; repo = "flow"; rev = "refs/tags/v${version}"; - sha256 = "1r4s4gw50pvp4r4mq2w45s9i7fbkf7zycgp8rrj1dqzmkl9v6kii"; + sha256 = "1bwrm0jab3pjq1md584szdb3vk4r2cka49qn6f9znnb1ji589x5q"; }; installPhase = '' diff --git a/pkgs/development/tools/analysis/garcosim/tracefilesim/default.nix b/pkgs/development/tools/analysis/garcosim/tracefilesim/default.nix index 7a6f3481d53..10f0d74c0dc 100644 --- a/pkgs/development/tools/analysis/garcosim/tracefilesim/default.nix +++ b/pkgs/development/tools/analysis/garcosim/tracefilesim/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation { ''; meta = with stdenv.lib; { - description = "Ease the analysis of existing memory management techniques, as well as the prototyping of new memory management techniques."; + description = "Ease the analysis of existing memory management techniques, as well as the prototyping of new memory management techniques"; homepage = "https://github.com/GarCoSim"; maintainers = [ maintainers.cmcdragonkai ]; license = licenses.gpl2; diff --git a/pkgs/development/tools/analysis/pev/default.nix b/pkgs/development/tools/analysis/pev/default.nix index 8e8f438b5e1..c7e2e27bece 100644 --- a/pkgs/development/tools/analysis/pev/default.nix +++ b/pkgs/development/tools/analysis/pev/default.nix @@ -5,8 +5,8 @@ stdenv.mkDerivation { src = fetchFromGitHub { owner = "merces"; repo = "pev"; - rev = "aa4ef7f"; - sha256 = "00a3g486343lhqcsf4vrdy5xif6v3cgcf2y8yp5b96x15c0wid36"; + rev = "aa4ef7f"; + sha256 = "00a3g486343lhqcsf4vrdy5xif6v3cgcf2y8yp5b96x15c0wid36"; fetchSubmodules = true; }; @@ -14,7 +14,7 @@ stdenv.mkDerivation { installFlags = [ "prefix=$(out)" ]; meta = with stdenv.lib; { - description = "pev is a full-featured, open source, multiplatform command line toolkit to work with PE (Portable Executables) binaries."; + description = "A full-featured, open source, multiplatform command line toolkit to work with PE (Portable Executables) binaries"; homepage = "http://pev.sourceforge.net/"; license = licenses.gpl2; platforms = platforms.linux; diff --git a/pkgs/development/tools/analysis/tflint/default.nix b/pkgs/development/tools/analysis/tflint/default.nix index fe7b834e8e8..284a44c971e 100644 --- a/pkgs/development/tools/analysis/tflint/default.nix +++ b/pkgs/development/tools/analysis/tflint/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "tflint"; - version = "0.20.2"; + version = "0.20.3"; src = fetchFromGitHub { owner = "terraform-linters"; repo = pname; rev = "v${version}"; - sha256 = "123ndg7byrflczxzhk2c48bb8wlwgqzf1m0dzi0mnw3h52qiqjyp"; + sha256 = "1zy6v1srm5v6bg2rqb3hb4cz8g7zwhraf91y810y9csh6r4fv29b"; }; - vendorSha256 = "1prf1hffvwl2hdkrr8hqz1wwcz2n9dzhf68ziz5k3fzsx30jki9l"; + vendorSha256 = "0s367ikq6y1izjim72lnqc98vypl072nimcwnw9y9d7nld5y77c8"; doCheck = false; diff --git a/pkgs/development/tools/analysis/valgrind/default.nix b/pkgs/development/tools/analysis/valgrind/default.nix index 2e485b3ed67..60d3a7c5ebc 100644 --- a/pkgs/development/tools/analysis/valgrind/default.nix +++ b/pkgs/development/tools/analysis/valgrind/default.nix @@ -86,5 +86,6 @@ stdenv.mkDerivation rec { "riscv32-linux" "riscv64-linux" "alpha-linux" ]; + broken = stdenv.isDarwin; # https://hydra.nixos.org/build/128521440/nixlog/2 }; } diff --git a/pkgs/development/tools/aws-sam-cli/default.nix b/pkgs/development/tools/aws-sam-cli/default.nix index a486d318608..f123aa79a10 100644 --- a/pkgs/development/tools/aws-sam-cli/default.nix +++ b/pkgs/development/tools/aws-sam-cli/default.nix @@ -7,14 +7,6 @@ let py = python.override { packageOverrides = self: super: { - aws-sam-translator = super.aws-sam-translator.overridePythonAttrs (oldAttrs: rec { - version = "1.25.0"; - src = oldAttrs.src.override { - inherit version; - sha256 = "08756yl5lpqgrpr80f2b6bdcgygr37l6q1yygklcg9hz4yfpccav"; - }; - }); - flask = super.flask.overridePythonAttrs (oldAttrs: rec { version = "1.0.2"; src = oldAttrs.src.override { @@ -39,11 +31,11 @@ with py.pkgs; buildPythonApplication rec { pname = "aws-sam-cli"; - version = "1.0.0rc1"; + version = "1.6.2"; src = fetchPypi { inherit pname version; - sha256 = "011b334gdvd9lhqia8c952q3cmzj99vik680180nbp0qh2xw6zpf"; + sha256 = "0scnymhhiiqrs2j0jaypxgq2wg1qf1w8f55qfay0b3nf51y6mh8y"; }; # Tests are not included in the PyPI package @@ -75,12 +67,13 @@ buildPythonApplication rec { # fix over-restrictive version bounds postPatch = '' substituteInPlace requirements/base.txt \ - --replace "boto3~=1.13.0, >=1.13.0" "boto3~=1.14.3" \ - --replace "serverlessrepo==0.1.9" "serverlessrepo~=0.1.9" \ - --replace "python-dateutil~=2.6, <2.8.1" "python-dateutil~=2.6" \ + --replace "boto3~=1.14.0, >=1.14.23" "boto3~=1.14" \ + --replace "docker~=4.2.0" "docker~=4.3.1" \ --replace "jmespath~=0.9.5" "jmespath~=0.10.0" \ - --replace "tomlkit==0.5.8" "tomlkit~=0.7.0" \ - --replace "requests==2.23.0" "requests~=2.24" + --replace "python-dateutil~=2.6, <2.8.1" "python-dateutil~=2.6" \ + --replace "requests==2.23.0" "requests~=2.24" \ + --replace "serverlessrepo==0.1.9" "serverlessrepo~=0.1.9" \ + --replace "tomlkit==0.5.8" "tomlkit~=0.7.0" ''; meta = with lib; { diff --git a/pkgs/development/tools/azcopy/default.nix b/pkgs/development/tools/azcopy/default.nix index 3d0fe8513c8..096e321fe70 100644 --- a/pkgs/development/tools/azcopy/default.nix +++ b/pkgs/development/tools/azcopy/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "azure-storage-azcopy"; - version = "10.6.0"; + version = "10.6.1"; src = fetchFromGitHub { owner = "Azure"; repo = "azure-storage-azcopy"; rev = "v${version}"; - sha256 = "0izjnbldgf0597j4rh2ir9jsc2nzp9vwxcgllvkm5lh1xqf6i0nf"; + sha256 = "1gmpdyc55mkzdkkhyzvy9517znvcj8hd9x3rpkpr86vfzgjv9qyv"; }; subPackages = [ "." ]; diff --git a/pkgs/development/tools/bazel-kazel/default.nix b/pkgs/development/tools/bazel-kazel/default.nix index 55f79a993ac..516ad2a64a0 100644 --- a/pkgs/development/tools/bazel-kazel/default.nix +++ b/pkgs/development/tools/bazel-kazel/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "bazel-kazel"; - version = "0.1.0"; + version = "0.1.2"; src = fetchFromGitHub { owner = "kubernetes"; repo = "repo-infra"; rev = "v${version}"; - sha256 = "121asn0h2vfgqnjk72wqjcfq0w15k15abjdm39i8hv455kzrc2hs"; + sha256 = "1fn6ppyjgg3v80n9rc9712xms5yq3xkkd95zyd64l5gh9mshjn86"; }; vendorSha256 = "1pzkjh4n9ai8yqi98bkdhicjdr2l8j3fckl5n90c2gdcwqyxvgkf"; diff --git a/pkgs/development/tools/bazel-watcher/default.nix b/pkgs/development/tools/bazel-watcher/default.nix index fae1310bd58..59a345faf29 100644 --- a/pkgs/development/tools/bazel-watcher/default.nix +++ b/pkgs/development/tools/bazel-watcher/default.nix @@ -73,7 +73,7 @@ buildBazelPackage rec { meta = with stdenv.lib; { homepage = "https://github.com/bazelbuild/bazel-watcher"; - description = "Tools for building Bazel targets when source files change."; + description = "Tools for building Bazel targets when source files change"; license = licenses.asl20; maintainers = with maintainers; [ kalbasit ]; platforms = platforms.all; diff --git a/pkgs/development/tools/bazelisk/default.nix b/pkgs/development/tools/bazelisk/default.nix index 3d475c1f880..2a20888426d 100644 --- a/pkgs/development/tools/bazelisk/default.nix +++ b/pkgs/development/tools/bazelisk/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "bazelisk"; - version = "1.7.1"; + version = "1.7.4"; src = fetchFromGitHub { owner = "bazelbuild"; repo = pname; rev = "v${version}"; - sha256 = "18akakh9bnpn0sngxar9f0r9hhx7dkd8y6q4j16x2d193gcw53c7"; + sha256 = "1mc1l2g2qrg9djpyyz203a6dpx5fxllisybmhrpmikyza15w935q"; }; vendorSha256 = "116wy1a7gmi2w8why9hszhcybfvpwp4iq62vshb25cdcma6q4mjh"; diff --git a/pkgs/development/tools/build-managers/bazel/bazel-remote/default.nix b/pkgs/development/tools/build-managers/bazel/bazel-remote/default.nix index 9910256afc0..0c9f4d7c50a 100644 --- a/pkgs/development/tools/build-managers/bazel/bazel-remote/default.nix +++ b/pkgs/development/tools/build-managers/bazel/bazel-remote/default.nix @@ -7,7 +7,7 @@ }: buildBazelPackage rec { - name = "bazel-remote-${version}"; + pname = "bazel-remote"; version = "1.0.0"; src = fetchFromGitHub { @@ -82,7 +82,7 @@ buildBazelPackage rec { meta = with stdenv.lib; { homepage = "https://github.com/buchgr/bazel-remote"; - description = "A remote HTTP/1.1 cache for Bazel."; + description = "A remote HTTP/1.1 cache for Bazel"; license = licenses.asl20; maintainers = [ maintainers.uri-canva ]; platforms = platforms.darwin ++ platforms.linux; diff --git a/pkgs/development/tools/build-managers/bazel/bazel_3/default.nix b/pkgs/development/tools/build-managers/bazel/bazel_3/default.nix index 0bfc9071d7e..0b5a7362ded 100644 --- a/pkgs/development/tools/build-managers/bazel/bazel_3/default.nix +++ b/pkgs/development/tools/build-managers/bazel/bazel_3/default.nix @@ -48,9 +48,10 @@ let srcs.bazel_skylib srcs.io_bazel_rules_sass srcs.platforms - (if stdenv.hostPlatform.isDarwin - then srcs."java_tools_javac11_darwin-v8.0.zip" - else srcs."java_tools_javac11_linux-v8.0.zip") + # `bazel query` wants all of these to be available regardless of platform. + srcs."java_tools_javac11_darwin-v8.0.zip" + srcs."java_tools_javac11_linux-v8.0.zip" + srcs."java_tools_javac11_windows-v8.0.zip" srcs."coverage_output_generator-v2.1.zip" srcs.build_bazel_rules_nodejs srcs."android_tools_pkg-0.19.0rc1.tar.gz" @@ -131,10 +132,21 @@ let bazelRC = writeTextFile { name = "bazel-rc"; text = '' - build --override_repository=${remote_java_tools.name}=${remote_java_tools} - build --distdir=${distDir} startup --server_javabase=${runJdk} + # Can't use 'common'; https://github.com/bazelbuild/bazel/issues/3054 + # Most commands inherit from 'build' anyway. + build --distdir=${distDir} + fetch --distdir=${distDir} + query --distdir=${distDir} + + build --override_repository=${remote_java_tools.name}=${remote_java_tools} + fetch --override_repository=${remote_java_tools.name}=${remote_java_tools} + query --override_repository=${remote_java_tools.name}=${remote_java_tools} + + # Provide a default java toolchain, this will be the same as ${runJdk} + build --host_javabase='@local_jdk//:jdk' + # load default location for the system wide configuration try-import /etc/bazel.bazelrc ''; @@ -534,7 +546,7 @@ stdenv.mkDerivation rec { export TEST_TMPDIR=$(pwd) hello_test () { - $out/bin/bazel test --distdir=${distDir} \ + $out/bin/bazel test \ --test_output=errors \ --java_toolchain='${javaToolchain}' \ examples/cpp:hello-success_test \ diff --git a/pkgs/development/tools/build-managers/bazel/buildtools/default.nix b/pkgs/development/tools/build-managers/bazel/buildtools/default.nix index dd9bc4016f5..43a70c6a765 100644 --- a/pkgs/development/tools/build-managers/bazel/buildtools/default.nix +++ b/pkgs/development/tools/build-managers/bazel/buildtools/default.nix @@ -20,7 +20,7 @@ buildGoPackage rec { buildFlagsArray = [ "-ldflags=-s -w -X main.buildVersion=${version} -X main.buildScmRevision=${src.rev}" ]; meta = with stdenv.lib; { - description = "Tools for working with Google's bazel buildtool. Includes buildifier, buildozer, and unused_deps."; + description = "Tools for working with Google's bazel buildtool. Includes buildifier, buildozer, and unused_deps"; homepage = "https://github.com/bazelbuild/buildtools"; license = licenses.asl20; maintainers = with maintainers; [ elasticdog uri-canva marsam ]; diff --git a/pkgs/development/tools/build-managers/bloop/default.nix b/pkgs/development/tools/build-managers/bloop/default.nix index c3049edee64..61a6b4bed4c 100644 --- a/pkgs/development/tools/build-managers/bloop/default.nix +++ b/pkgs/development/tools/build-managers/bloop/default.nix @@ -85,7 +85,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://scalacenter.github.io/bloop/"; license = licenses.asl20; - description = "Bloop is a Scala build server and command-line tool to make the compile and test developer workflows fast and productive in a build-tool-agnostic way."; + description = "A Scala build server and command-line tool to make the compile and test developer workflows fast and productive in a build-tool-agnostic way"; platforms = [ "x86_64-linux" "x86_64-darwin" ]; maintainers = with maintainers; [ tomahna ]; }; diff --git a/pkgs/development/tools/build-managers/bmake/default.nix b/pkgs/development/tools/build-managers/bmake/default.nix index 219bd6e30e3..9bda4cde044 100644 --- a/pkgs/development/tools/build-managers/bmake/default.nix +++ b/pkgs/development/tools/build-managers/bmake/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { pname = "bmake"; - version = "20200710"; + version = "20200902"; src = fetchurl { url = "http://www.crufty.net/ftp/pub/sjg/${pname}-${version}.tar.gz"; - sha256 = "0v5paqdc0wnqlw4dy45mnydkmabsky33nvd7viwd2ygg351zqf35"; + sha256 = "1v1v81llsiy8qbpy38nml1x08dhrihwh040pqgwbwb9zy1108b08"; }; nativeBuildInputs = [ getopt ]; diff --git a/pkgs/development/tools/build-managers/gradle/default.nix b/pkgs/development/tools/build-managers/gradle/default.nix index 73e9bc7b560..d06282739af 100644 --- a/pkgs/development/tools/build-managers/gradle/default.nix +++ b/pkgs/development/tools/build-managers/gradle/default.nix @@ -51,15 +51,15 @@ rec { }; }; - gradle_latest = gradle_6_6; + gradle_latest = gradle_6_7; - gradle_6_6 = gradleGen rec { - name = "gradle-6.6"; - nativeVersion = "0.22-milestone-4"; + gradle_6_7 = gradleGen rec { + name = "gradle-6.7"; + nativeVersion = "0.22-milestone-8"; src = fetchurl { url = "https://services.gradle.org/distributions/${name}-bin.zip"; - sha256 = "09a0fnz6fn8yaxm3q3iwyjm3nnaz7k8i1xlpc7sm414py043by76"; + sha256 = "1i6zm55wzy13wvvmf3804b0rs47yrqqablf4gpf374ls05cpgmca"; }; }; diff --git a/pkgs/development/tools/build-managers/meson/default.nix b/pkgs/development/tools/build-managers/meson/default.nix index aa11ba7638b..8421fb7d70a 100644 --- a/pkgs/development/tools/build-managers/meson/default.nix +++ b/pkgs/development/tools/build-managers/meson/default.nix @@ -9,21 +9,14 @@ python3.pkgs.buildPythonApplication rec { pname = "meson"; - version = "0.55.1"; + version = "0.55.3"; src = python3.pkgs.fetchPypi { inherit pname version; - sha256 = "O1dB+ITgSSi9+hlHRn/wavpsmOYjwlzvda33HKOc4IA="; + sha256 = "19cjy24mfaswxyvqmns6rd7hx05ybqb663zlgklspfr8l4jjmvbb"; }; patches = [ - # Meson 0.55.0 incorrectly considers skipped tests as failures, - # which makes some packages like gjs fail to build. - (fetchpatch { - url = "https://github.com/mesonbuild/meson/commit/7db49db67d4aa7582cf46feb7157235e66aa95b1.diff"; - sha256 = "1chq52sgk24afdlswssr8n8p6fa2wz8rjlxvkjhpqg1kg3qnqc9p"; - }) - # Upstream insists on not allowing bindir and other dir options # outside of prefix for some reason: # https://github.com/mesonbuild/meson/issues/2561 diff --git a/pkgs/development/tools/buildah/default.nix b/pkgs/development/tools/buildah/default.nix index 666437126a7..5f4f2a47928 100644 --- a/pkgs/development/tools/buildah/default.nix +++ b/pkgs/development/tools/buildah/default.nix @@ -14,13 +14,13 @@ buildGoModule rec { pname = "buildah"; - version = "1.16.4"; + version = "1.16.5"; src = fetchFromGitHub { owner = "containers"; repo = "buildah"; rev = "v${version}"; - sha256 = "1i7v4chbgl15n3vn1liinjd4lxaxk9q2lyi1l2ak7iazx9px6cn9"; + sha256 = "1d2k7n1d9mpkyjy7hp1svl34ssai62df3mp5awsill092dlwn8p2"; }; outputs = [ "out" "man" ]; diff --git a/pkgs/development/tools/castxml/default.nix b/pkgs/development/tools/castxml/default.nix index 0a455b4d7cd..90be513bd50 100644 --- a/pkgs/development/tools/castxml/default.nix +++ b/pkgs/development/tools/castxml/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchFromGitHub -, pythonPackages +, python3Packages , cmake , llvmPackages , libffi, libxml2, zlib @@ -17,7 +17,7 @@ stdenv.mkDerivation rec { sha256 = "0ypj67xrgj228myp7l1gsjw1ja97q68nmj98dsd33srmiayqraj4"; }; - nativeBuildInputs = [ cmake ] ++ stdenv.lib.optionals withMan [ pythonPackages.sphinx ]; + nativeBuildInputs = [ cmake ] ++ stdenv.lib.optionals withMan [ python3Packages.sphinx ]; clangVersion = lib.getVersion llvmPackages.clang; diff --git a/pkgs/development/tools/check/default.nix b/pkgs/development/tools/check/default.nix index 107b8b58024..a28124828f9 100644 --- a/pkgs/development/tools/check/default.nix +++ b/pkgs/development/tools/check/default.nix @@ -21,7 +21,7 @@ buildGoPackage rec { goDeps = ./deps.nix; meta = with lib; { - description = "A set of utilities for checking Go sources."; + description = "A set of utilities for checking Go sources"; homepage = "https://gitlab.com/opennota/check"; license = licenses.gpl3; maintainers = with maintainers; [ kalbasit ]; diff --git a/pkgs/development/tools/clj-kondo/default.nix b/pkgs/development/tools/clj-kondo/default.nix index b7eec641b4b..f64041d1be8 100644 --- a/pkgs/development/tools/clj-kondo/default.nix +++ b/pkgs/development/tools/clj-kondo/default.nix @@ -42,7 +42,7 @@ stdenv.mkDerivation rec { ''; meta = with lib; { - description = "A linter for Clojure code that sparks joy."; + description = "A linter for Clojure code that sparks joy"; homepage = "https://github.com/borkdude/clj-kondo"; license = licenses.epl10; platforms = graalvm8.meta.platforms; diff --git a/pkgs/development/tools/continuous-integration/buildkite-agent/default.nix b/pkgs/development/tools/continuous-integration/buildkite-agent/default.nix index ceaa704b565..97f75a99c07 100644 --- a/pkgs/development/tools/continuous-integration/buildkite-agent/default.nix +++ b/pkgs/development/tools/continuous-integration/buildkite-agent/default.nix @@ -1,8 +1,8 @@ -{ fetchFromGitHub, stdenv, buildGoPackage, +{ fetchFromGitHub, stdenv, buildGoModule, makeWrapper, coreutils, git, openssh, bash, gnused, gnugrep }: -buildGoPackage rec { +buildGoModule rec { name = "buildkite-agent-${version}"; - version = "3.17.0"; + version = "3.25.0"; goPackagePath = "github.com/buildkite/agent"; @@ -10,17 +10,18 @@ buildGoPackage rec { owner = "buildkite"; repo = "agent"; rev = "v${version}"; - sha256 = "0a7x919kxnpdn0pnhc5ilx1z6ninx8zgjvsd0jcg4qwh0qqp5ppr"; + sha256 = "VxAGi2NpXpc3U+GNIvGJSkdHGODrX2s8oY+dQ8QXIHQ="; }; + + vendorSha256 = "X1K6uKiMFXTDT1PcedGQ8HLGox8ePP7Cz0Ihf4m9ts8="; + postPatch = '' substituteInPlace bootstrap/shell/shell.go --replace /bin/bash ${bash}/bin/bash ''; nativeBuildInputs = [ makeWrapper ]; - # on Linux, the TMPDIR is /build which is the same prefix as this package - # remove once #35068 is merged - noAuditTmpdir = stdenv.isLinux; + doCheck = false; postInstall = '' # Fix binary name @@ -43,6 +44,6 @@ buildGoPackage rec { homepage = "https://buildkite.com/docs/agent"; license = licenses.mit; maintainers = with maintainers; [ pawelpacana zimbatm rvl ]; - platforms = platforms.unix; + platforms = with platforms; unix ++ darwin; }; } diff --git a/pkgs/development/tools/continuous-integration/drone-cli/default.nix b/pkgs/development/tools/continuous-integration/drone-cli/default.nix index 3df406eb560..66fb878aa26 100644 --- a/pkgs/development/tools/continuous-integration/drone-cli/default.nix +++ b/pkgs/development/tools/continuous-integration/drone-cli/default.nix @@ -24,6 +24,6 @@ in buildGoModule rec { meta = with stdenv.lib; { maintainers = with maintainers; [ bricewge ]; license = licenses.asl20; - description = "Command line client for the Drone continuous integration server."; + description = "Command line client for the Drone continuous integration server"; }; } diff --git a/pkgs/development/tools/continuous-integration/fly/default.nix b/pkgs/development/tools/continuous-integration/fly/default.nix index c85f5473de8..1dcb247a4c8 100644 --- a/pkgs/development/tools/continuous-integration/fly/default.nix +++ b/pkgs/development/tools/continuous-integration/fly/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "fly"; - version = "6.5.1"; + version = "6.6.0"; src = fetchFromGitHub { owner = "concourse"; repo = "concourse"; rev = "v${version}"; - sha256 = "0ldw40xn9nb5picly32nq558x0klvkyrr9af0jfngbvm4l5209bc"; + sha256 = "09cfsq8vfjhavhqcydg0l3bi1g12y2p160yi2v0y5vk7ipiqyzrd"; }; vendorSha256 = "1fxbxkg7disndlmb065abnfn7sn79qclkcbizmrq49f064w1ijr4"; diff --git a/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix b/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix index b59a4561728..3547da41f07 100644 --- a/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix +++ b/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix @@ -1,16 +1,16 @@ { lib, buildGoPackage, fetchFromGitLab, fetchurl }: let - version = "13.4.1"; + version = "13.5.0"; # Gitlab runner embeds some docker images these are prebuilt for arm and x86_64 docker_x86_64 = fetchurl { url = "https://gitlab-runner-downloads.s3.amazonaws.com/v${version}/helper-images/prebuilt-x86_64.tar.xz"; - sha256 = "0yc4yfqhh51p0nz0sl2qfp48n431qgp23wn3aqq3jg4fh9578prb"; + sha256 = "1cahv98hhwcc0czg7c86sqk0r6kw3gxnx8j6mqp1zm19aa30sabk"; }; docker_arm = fetchurl { url = "https://gitlab-runner-downloads.s3.amazonaws.com/v${version}/helper-images/prebuilt-arm.tar.xz"; - sha256 = "1n50izz21dmd14qm6y9fsgwf5f0r9829dv79mvlqxmh1q87acm93"; + sha256 = "1wk7xn8jap8699cpgqkpgxmd908qjxlsfjswknrha1n8y2c5bjgx"; }; in buildGoPackage rec { @@ -30,7 +30,7 @@ buildGoPackage rec { owner = "gitlab-org"; repo = "gitlab-runner"; rev = "v${version}"; - sha256 = "10k3xn3fapwx52s3r3pk972k1s7793cgja7g1fvm06pic8l7q05g"; + sha256 = "0qfzdbhj68lq5pa1hvb703yx9grh3hvnnw6jb4bj4fckncd3avgm"; }; patches = [ ./fix-shell-path.patch ]; diff --git a/pkgs/development/tools/corundum/default.nix b/pkgs/development/tools/corundum/default.nix index 3497f709964..62d00cbc376 100644 --- a/pkgs/development/tools/corundum/default.nix +++ b/pkgs/development/tools/corundum/default.nix @@ -8,7 +8,7 @@ bundlerApp { passthru.updateScript = bundlerUpdateScript "corundum"; meta = with lib; { - description = "Tool and libraries for maintaining Ruby gems."; + description = "Tool and libraries for maintaining Ruby gems"; homepage = "https://github.com/nyarly/corundum"; license = licenses.mit; maintainers = with maintainers; [ nyarly nicknovitski ]; diff --git a/pkgs/development/tools/coursier/default.nix b/pkgs/development/tools/coursier/default.nix index b3ae0328c4e..ac2338b4c18 100644 --- a/pkgs/development/tools/coursier/default.nix +++ b/pkgs/development/tools/coursier/default.nix @@ -3,16 +3,16 @@ let zshCompletion = version: fetchurl { url = "https://raw.githubusercontent.com/coursier/coursier/v${version}/modules/cli/src/main/resources/completions/zsh"; - sha256 = "1mn6cdmf59nkz5012wgd3gd6hpk2w4629sk8z95230ky8487dac3"; + sha256 = "0afxzrk9w1qinfsz55jjrxydw0fcv6p722g1q955dl7f6xbab1jh"; }; in stdenv.mkDerivation rec { pname = "coursier"; - version = "2.0.3"; + version = "2.0.5"; src = fetchurl { url = "https://github.com/coursier/coursier/releases/download/v${version}/coursier"; - sha256 = "0jvccyiqrq1iws2q9m3vivzw08jl0p77n9qbf22hgb3zhspfdnyx"; + sha256 = "1j614pw8i2mfgrv3jb5q3ifrxkrb7apj13zdrbnvnh4bzwlg5jb2"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/database/ephemeralpg/default.nix b/pkgs/development/tools/database/ephemeralpg/default.nix index 53f3c1df628..b2599cce430 100644 --- a/pkgs/development/tools/database/ephemeralpg/default.nix +++ b/pkgs/development/tools/database/ephemeralpg/default.nix @@ -1,10 +1,10 @@ { stdenv, fetchurl, postgresql, getopt, makeWrapper }: stdenv.mkDerivation rec { pname = "ephemeralpg"; - version = "3.0"; + version = "3.1"; src = fetchurl { url = "http://ephemeralpg.org/code/${pname}-${version}.tar.gz"; - sha256 = "1j0g7g114ma7y7sadbng5p1ss1zsm9zpicm77qspym6565733vvh"; + sha256 = "1ap22ki8yz6agd0qybcjgs4b9izw1rwwcgpxn3jah2ccfyax34s6"; }; buildInputs = [ makeWrapper ]; installPhase = '' @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { wrapProgram $out/bin/pg_tmp --prefix PATH : ${stdenv.lib.makeBinPath [ postgresql getopt ]} ''; meta = with stdenv.lib; { - description = ''Run tests on an isolated, temporary PostgreSQL database.''; + description = "Run tests on an isolated, temporary PostgreSQL database"; license = licenses.isc; homepage = "http://ephemeralpg.org/"; platforms = platforms.all; diff --git a/pkgs/development/tools/database/litecli/default.nix b/pkgs/development/tools/database/litecli/default.nix index 17f7e2c7e49..3d24ac34b3e 100644 --- a/pkgs/development/tools/database/litecli/default.nix +++ b/pkgs/development/tools/database/litecli/default.nix @@ -2,7 +2,7 @@ python3Packages.buildPythonApplication rec { pname = "litecli"; - version = "1.3.2"; + version = "1.4.1"; # Python 2 won't have prompt_toolkit 2.x.x # See: https://github.com/NixOS/nixpkgs/blob/f49e2ad3657dede09dc998a4a98fd5033fb52243/pkgs/top-level/python-packages.nix#L3408 @@ -10,7 +10,7 @@ python3Packages.buildPythonApplication rec { src = python3Packages.fetchPypi { inherit pname version; - sha256 = "0bfx7fw6jnkqxa82xvd10yx1w2wbmrrqxwbh4anp5x9wnl91a9lp"; + sha256 = "FARWjtbS5zi/XQDyAVImUmArLj8xATz1jZ4jnXFdq1w="; }; propagatedBuildInputs = with python3Packages; [ diff --git a/pkgs/development/tools/deadcode/default.nix b/pkgs/development/tools/deadcode/default.nix index 44c824b2c1e..014acc89e1f 100644 --- a/pkgs/development/tools/deadcode/default.nix +++ b/pkgs/development/tools/deadcode/default.nix @@ -22,7 +22,7 @@ buildGoPackage rec { }; meta = with lib; { - description = "deadcode is a very simple utility which detects unused declarations in a Go package."; + description = "Very simple utility which detects unused declarations in a Go package"; homepage = "https://github.com/remyoudompheng/go-misc/tree/master/deadcode"; license = licenses.bsd3; maintainers = with maintainers; [ kalbasit ]; diff --git a/pkgs/development/tools/deis/default.nix b/pkgs/development/tools/deis/default.nix index 9e45d5988cc..4a07a05a636 100644 --- a/pkgs/development/tools/deis/default.nix +++ b/pkgs/development/tools/deis/default.nix @@ -27,7 +27,7 @@ buildGoPackage rec { meta = with stdenv.lib; { homepage = "https://deis.io"; - description = "A command line utility used to interact with the Deis open source PaaS."; + description = "A command line utility used to interact with the Deis open source PaaS"; license = licenses.asl20; platforms = platforms.unix; maintainers = with maintainers; [ diff --git a/pkgs/development/tools/deisctl/default.nix b/pkgs/development/tools/deisctl/default.nix index 057a8b87a0f..a245a06afe1 100644 --- a/pkgs/development/tools/deisctl/default.nix +++ b/pkgs/development/tools/deisctl/default.nix @@ -21,7 +21,7 @@ buildGoPackage rec { meta = with stdenv.lib; { homepage = "https://deis.io"; - description = "A command-line utility used to provision and operate a Deis cluster."; + description = "A command-line utility used to provision and operate a Deis cluster"; license = licenses.asl20; platforms = platforms.unix; maintainers = with maintainers; [ diff --git a/pkgs/development/tools/devpi-server/default.nix b/pkgs/development/tools/devpi-server/default.nix index 4b5499b87bc..53950d08f76 100644 --- a/pkgs/development/tools/devpi-server/default.nix +++ b/pkgs/development/tools/devpi-server/default.nix @@ -1,18 +1,22 @@ -{ stdenv, python3Packages, nginx }: +{ stdenv, fetchFromGitHub, python3Packages, nginx }: python3Packages.buildPythonApplication rec { pname = "devpi-server"; - version = "5.5.0"; + version = "6.0.0.dev0"; - src = python3Packages.fetchPypi { - inherit pname version; - sha256 = "0lily4a0k13bygx07x2f2q4nkwny0fj34hpac9i6mc70ysdn1hhi"; + src = fetchFromGitHub { + owner = "devpi"; + repo = "devpi"; + rev = "68ee291ef29a93f6d921d4927aec8d13919b4a4c"; + sha256 = "1ivd5dy9f2gq07w8n2gywa0n0d9wv8644l53ni9fz7i69jf8q2fm"; }; + sourceRoot = "source/server"; propagatedBuildInputs = with python3Packages; [ py appdirs devpi-common + defusedxml execnet itsdangerous repoze_lru diff --git a/pkgs/development/tools/doctl/default.nix b/pkgs/development/tools/doctl/default.nix index 45795b67ea4..b30bd8d2990 100644 --- a/pkgs/development/tools/doctl/default.nix +++ b/pkgs/development/tools/doctl/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "doctl"; - version = "1.46.0"; + version = "1.49.0"; vendorSha256 = null; @@ -32,7 +32,7 @@ buildGoModule rec { owner = "digitalocean"; repo = "doctl"; rev = "v${version}"; - sha256 = "1f9gw1qjannswx1vy64a5a2cfr8azsci241pk0xhrhk6aqpjzx1n"; + sha256 = "1z7424am1fb1l9bz8q1lfzmhz84c29v7k5p391m4hhbl8h46x6ca"; }; meta = with lib; { diff --git a/pkgs/development/tools/drm_info/default.nix b/pkgs/development/tools/drm_info/default.nix index 9243bbb161b..c052db92e0c 100644 --- a/pkgs/development/tools/drm_info/default.nix +++ b/pkgs/development/tools/drm_info/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { buildInputs = [ libdrm json_c pciutils ]; meta = with stdenv.lib; { - description = "Small utility to dump info about DRM devices."; + description = "Small utility to dump info about DRM devices"; homepage = "https://github.com/ascent12/drm_info"; license = licenses.mit; maintainers = with maintainers; [ tadeokondrak ]; diff --git a/pkgs/development/tools/dt-schema/default.nix b/pkgs/development/tools/dt-schema/default.nix index 5cba13b6689..776a3b06143 100644 --- a/pkgs/development/tools/dt-schema/default.nix +++ b/pkgs/development/tools/dt-schema/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "dtschema"; - version = "2020.6"; + version = "2020.8.1"; src = fetchPypi { inherit pname version; - sha256 = "1zdm0zbn1dfk02yqghfvd0nb26hmzivb6mln6bvxjfdcv6n7pdqf"; + sha256 = "5c98202abb4977aac6a2995a7f4ed2f7e51739db6fd72861d29681f865c27c1b"; }; nativeBuildInputs = [ setuptools_scm git ]; diff --git a/pkgs/development/tools/ejson/default.nix b/pkgs/development/tools/ejson/default.nix index 17e3f5f7be1..05deb05ed7e 100644 --- a/pkgs/development/tools/ejson/default.nix +++ b/pkgs/development/tools/ejson/default.nix @@ -35,7 +35,7 @@ in buildGoPackage rec { ''; meta = with lib; { - description = "A small library to manage encrypted secrets using asymmetric encryption."; + description = "A small library to manage encrypted secrets using asymmetric encryption"; license = licenses.mit; homepage = "https://github.com/Shopify/ejson"; platforms = platforms.unix; diff --git a/pkgs/development/tools/errcheck/default.nix b/pkgs/development/tools/errcheck/default.nix index d288ff4dfec..2df473ac596 100644 --- a/pkgs/development/tools/errcheck/default.nix +++ b/pkgs/development/tools/errcheck/default.nix @@ -20,7 +20,7 @@ buildGoPackage rec { goDeps = ./deps.nix; meta = with lib; { - description = "errcheck is a program for checking for unchecked errors in go programs."; + description = "Program for checking for unchecked errors in go programs"; homepage = "https://github.com/kisielk/errcheck"; license = licenses.mit; maintainers = with maintainers; [ kalbasit ]; diff --git a/pkgs/development/tools/gauge/default.nix b/pkgs/development/tools/gauge/default.nix index 8755466ec8c..457d7b7a4b5 100644 --- a/pkgs/development/tools/gauge/default.nix +++ b/pkgs/development/tools/gauge/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { pname = "gauge"; - version = "1.1.3"; + version = "1.1.4"; goPackagePath = "github.com/getgauge/gauge"; excludedPackages = ''\(build\|man\)''; @@ -11,7 +11,7 @@ buildGoPackage rec { owner = "getgauge"; repo = "gauge"; rev = "v${version}"; - sha256 = "11qllg1alv9khkgjarpzlsqg5ygisjprg79n2jqhv1w6izx88cqc"; + sha256 = "07kq6j5scbcicgb8dqkf129q5ppvnlvkfp165ql30jrkfd6ybf6y"; }; meta = with stdenv.lib; { diff --git a/pkgs/development/tools/gdm/default.nix b/pkgs/development/tools/gdm/default.nix index 2217ea591ff..2f26a1c35f8 100644 --- a/pkgs/development/tools/gdm/default.nix +++ b/pkgs/development/tools/gdm/default.nix @@ -16,7 +16,7 @@ buildGoPackage rec { goDeps = ./deps.nix; meta = with stdenv.lib; { - description = "Minimalist dependency manager for Go written in Go."; + description = "Minimalist dependency manager for Go written in Go"; homepage = "https://github.com/sparrc/gdm"; license = licenses.unlicense; maintainers = [ maintainers.mic92 ]; diff --git a/pkgs/development/tools/git-ftp/default.nix b/pkgs/development/tools/git-ftp/default.nix index 7e62a93d564..0c107ecc503 100644 --- a/pkgs/development/tools/git-ftp/default.nix +++ b/pkgs/development/tools/git-ftp/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { buildInputs = [pandoc man]; meta = with stdenv.lib; { - description = "Git powered FTP client written as shell script."; + description = "Git powered FTP client written as shell script"; homepage = "https://git-ftp.github.io/"; license = licenses.gpl3; maintainers = with maintainers; [ tweber ]; diff --git a/pkgs/development/tools/gllvm/default.nix b/pkgs/development/tools/gllvm/default.nix index 7c4213b4cc0..58416e30a8c 100644 --- a/pkgs/development/tools/gllvm/default.nix +++ b/pkgs/development/tools/gllvm/default.nix @@ -2,7 +2,7 @@ buildGoPackage rec { pname = "gllvm"; - version = "1.2.7"; + version = "1.2.8"; goPackagePath = "github.com/SRI-CSL/gllvm"; @@ -10,7 +10,7 @@ buildGoPackage rec { owner = "SRI-CSL"; repo = "gllvm"; rev = "v${version}"; - sha256 = "13cmmgbcdfgyxnxqfrn4m6vf0bhpday8lmrr3sm6rk48g77cq203"; + sha256 = "090ghg7ivf6snkabba00pn8a9x5wj8dgpdq7qjhmw1lpijd0mq0y"; }; meta = with stdenv.lib; { diff --git a/pkgs/development/tools/go-migrate/default.nix b/pkgs/development/tools/go-migrate/default.nix index ee942beb92c..96b66ebc0b5 100644 --- a/pkgs/development/tools/go-migrate/default.nix +++ b/pkgs/development/tools/go-migrate/default.nix @@ -17,7 +17,7 @@ buildGoModule rec { meta = with stdenv.lib; { homepage = "https://github.com/golang-migrate/migrate"; - description = "Database migrations. CLI and Golang library."; + description = "Database migrations. CLI and Golang library"; maintainers = with maintainers; [ offline ]; license = licenses.mit; }; diff --git a/pkgs/development/tools/go-outline/default.nix b/pkgs/development/tools/go-outline/default.nix index 3df1d5cae25..f10ee426c08 100644 --- a/pkgs/development/tools/go-outline/default.nix +++ b/pkgs/development/tools/go-outline/default.nix @@ -16,7 +16,7 @@ buildGoPackage rec { }; meta = { - description = "Utility to extract JSON representation of declarations from a Go source file."; + description = "Utility to extract JSON representation of declarations from a Go source file"; homepage = "https://github.com/ramya-rao-a/go-outline"; maintainers = with stdenv.lib.maintainers; [ vdemeester ]; license = stdenv.lib.licenses.mit; diff --git a/pkgs/development/tools/go-protobuf/default.nix b/pkgs/development/tools/go-protobuf/default.nix index 28d429c6432..c5e9af3e7bb 100644 --- a/pkgs/development/tools/go-protobuf/default.nix +++ b/pkgs/development/tools/go-protobuf/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "go-protobuf"; - version = "1.4.2"; + version = "1.4.3"; src = fetchFromGitHub { owner = "golang"; repo = "protobuf"; rev = "v${version}"; - sha256 = "0m5z81im4nsyfgarjhppayk4hqnrwswr3nix9mj8pff8x9jvcjqw"; + sha256 = "1kf1d7xmyjvy0z6j5czp6nqyvj9zrk6liv6znif08927xqfrzyln"; }; vendorSha256 = "04w9vhkrwb2zfqk73xmhignjyvjqmz1j93slkqp7v8jj2dhyla54"; diff --git a/pkgs/development/tools/go-symbols/default.nix b/pkgs/development/tools/go-symbols/default.nix index bdee5e4b25a..1e2b63ba154 100644 --- a/pkgs/development/tools/go-symbols/default.nix +++ b/pkgs/development/tools/go-symbols/default.nix @@ -15,7 +15,7 @@ buildGoPackage rec { }; meta = { - description = "A utility for extracting a JSON representation of the package symbols from a go source tree."; + description = "A utility for extracting a JSON representation of the package symbols from a go source tree"; homepage = "https://github.com/acroca/go-symbols"; maintainers = with stdenv.lib.maintainers; [ vdemeester ]; license = stdenv.lib.licenses.mit; diff --git a/pkgs/development/tools/go-tools/default.nix b/pkgs/development/tools/go-tools/default.nix index ec4b1ee66b3..c566ea528b3 100644 --- a/pkgs/development/tools/go-tools/default.nix +++ b/pkgs/development/tools/go-tools/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "go-tools"; - version = "2020.1.5"; + version = "2020.1.6"; src = fetchFromGitHub { owner = "dominikh"; repo = "go-tools"; rev = version; - sha256 = "1ry3ywncc9qkmh8ihh67v6k8nmqhq2gvfyrl1ykl4z6s56b7f9za"; + sha256 = "1r83gx7k4fiz3wlshhniz1i39xv492nni1nvfxjfqgnmkavb6r4x"; }; - vendorSha256 = "0nbbngsphklzhcmqafrw1im2l1vnfcma9sb4vskdpdrsadv5ss5r"; + vendorSha256 = "1g04rzirjv90s1i542cqi2abhgh8b74qwhp1hp1cszgb7k8nndmr"; doCheck = false; diff --git a/pkgs/development/tools/goconvey/default.nix b/pkgs/development/tools/goconvey/default.nix index 4c4d651ce60..173da3ff29d 100644 --- a/pkgs/development/tools/goconvey/default.nix +++ b/pkgs/development/tools/goconvey/default.nix @@ -17,7 +17,7 @@ buildGoPackage rec { }; meta = { - description = "Go testing in the browser. Integrates with `go test`. Write behavioral tests in Go."; + description = "Go testing in the browser. Integrates with `go test`. Write behavioral tests in Go"; homepage = "https://github.com/smartystreets/goconvey"; maintainers = with stdenv.lib.maintainers; [ vdemeester ]; license = stdenv.lib.licenses.mit; diff --git a/pkgs/development/tools/gocyclo/default.nix b/pkgs/development/tools/gocyclo/default.nix index 4ce97349fd7..d11cf609328 100644 --- a/pkgs/development/tools/gocyclo/default.nix +++ b/pkgs/development/tools/gocyclo/default.nix @@ -19,7 +19,7 @@ buildGoPackage rec { }; meta = with lib; { - description = "Calculate cyclomatic complexities of functions in Go source code."; + description = "Calculate cyclomatic complexities of functions in Go source code"; homepage = "https://github.com/alecthomas/gocyclo"; license = licenses.bsd3; maintainers = with maintainers; [ kalbasit ]; diff --git a/pkgs/development/tools/gofumpt/default.nix b/pkgs/development/tools/gofumpt/default.nix index 080f4bd3305..82ae3d4bb7b 100644 --- a/pkgs/development/tools/gofumpt/default.nix +++ b/pkgs/development/tools/gofumpt/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "gofumpt"; - version = "2019-11-11"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "mvdan"; repo = pname; - rev = "eb442649d62000da5d11671f3beb1afa1b746fd7"; - sha256 = "1cw9mmavxz8gxzzwsllvf5lwb2wwi19jbc7hcwxsi4ywp7a84gh0"; + rev = "85d5401eb0f699d87b0d6c949dd4c0d5fb23f2e0"; + sha256 = "0n72d7p4y89kfilcdx3qb63qy6xm8dyp6q8s8954wrkm2wlhkwiy"; }; - vendorSha256 = "14a3p163xy861xb6x160wy15hzjc75n36jdyzaxl877i17shba8z"; + vendorSha256 = "1s546hp4ngzqvfx7dbd43k7b94z0mvndgdkndh4ypkkl3rpd9kkz"; doCheck = false; diff --git a/pkgs/development/tools/golangci-lint/default.nix b/pkgs/development/tools/golangci-lint/default.nix index 1eaa00e8086..743247d6014 100644 --- a/pkgs/development/tools/golangci-lint/default.nix +++ b/pkgs/development/tools/golangci-lint/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "golangci-lint"; - version = "1.31.0"; + version = "1.32.0"; src = fetchFromGitHub { owner = "golangci"; repo = "golangci-lint"; rev = "v${version}"; - sha256 = "10divgsc095jiw7n3gwzikbgvsd0hdwjyv469vq939zm7rqq3acy"; + sha256 = "157sqpwhb2984yri7w6x6pzp53ql56svv8bvbigcih3syrngxspr"; }; - vendorSha256 = "1pa99jfz6i696x6v06aq56r0kmxmz4khb1hw7pvxds0bn16a4swr"; + vendorSha256 = "1caf0flmq032azxwyfq6dvhw757nncxigfkf32s2a6g3jmqr1g3y"; doCheck = false; diff --git a/pkgs/development/tools/gomodifytags/default.nix b/pkgs/development/tools/gomodifytags/default.nix index cf2c5a5b9a6..70bbc635cc1 100644 --- a/pkgs/development/tools/gomodifytags/default.nix +++ b/pkgs/development/tools/gomodifytags/default.nix @@ -16,7 +16,7 @@ buildGoModule rec { }; meta = { - description = "Go tool to modify struct field tags."; + description = "Go tool to modify struct field tags"; homepage = "https://github.com/fatih/gomodifytags"; maintainers = with stdenv.lib.maintainers; [ vdemeester ]; license = stdenv.lib.licenses.bsd3; diff --git a/pkgs/development/tools/gopkgs/default.nix b/pkgs/development/tools/gopkgs/default.nix index d112654ab43..8d26ca7eb44 100644 --- a/pkgs/development/tools/gopkgs/default.nix +++ b/pkgs/development/tools/gopkgs/default.nix @@ -18,7 +18,7 @@ buildGoModule rec { doCheck = false; meta = { - description = "Tool to get list available Go packages."; + description = "Tool to get list available Go packages"; homepage = "https://github.com/uudashr/gopkgs"; maintainers = with stdenv.lib.maintainers; [ vdemeester ]; license = stdenv.lib.licenses.mit; diff --git a/pkgs/development/tools/gopls/default.nix b/pkgs/development/tools/gopls/default.nix index 1e750a2dec5..290500376e8 100644 --- a/pkgs/development/tools/gopls/default.nix +++ b/pkgs/development/tools/gopls/default.nix @@ -2,19 +2,22 @@ buildGoModule rec { pname = "gopls"; - version = "0.5.0"; + version = "0.5.1"; src = fetchgit { rev = "gopls/v${version}"; url = "https://go.googlesource.com/tools"; - sha256 = "150jg1qmdszfvh1x5fagawgc24xy19xjg9y1hq3drwy7lfdnahmq"; + sha256 = "1vnidc8kaisdyprylsibddpdksm84c6qr528768yvi93crdmddls"; }; modRoot = "gopls"; - vendorSha256 = "1s3d4hnbw0mab7njck79qmgkjn87vs4ffk44zk2qdrzqjjlqq5iv"; + vendorSha256 = "048qs6ygav8al3sz9vwf6fqaahkr8wr3dj1yd2jhr7c5h30n4rs2"; doCheck = false; + # Only build gopls, and not the integration tests or documentation generator. + subPackages = [ "." ]; + meta = with stdenv.lib; { description = "Official language server for the Go language"; homepage = "https://github.com/golang/tools/tree/master/gopls"; diff --git a/pkgs/development/tools/gore/default.nix b/pkgs/development/tools/gore/default.nix index fbc3152cef1..ca9c8d9eec0 100644 --- a/pkgs/development/tools/gore/default.nix +++ b/pkgs/development/tools/gore/default.nix @@ -16,7 +16,7 @@ buildGoModule rec { doCheck = false; meta = with stdenv.lib; { - description = "Yet another Go REPL that works nicely."; + description = "Yet another Go REPL that works nicely"; homepage = "https://github.com/motemen/gore"; license = licenses.mit; maintainers = with maintainers; [ offline ]; diff --git a/pkgs/development/tools/gosec/default.nix b/pkgs/development/tools/gosec/default.nix index ffbd98a4577..44862bb3311 100644 --- a/pkgs/development/tools/gosec/default.nix +++ b/pkgs/development/tools/gosec/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "gosec"; - version = "2.4.0"; + version = "2.5.0"; subPackages = [ "cmd/gosec" ]; @@ -10,10 +10,10 @@ buildGoModule rec { owner = "securego"; repo = pname; rev = "v${version}"; - sha256 = "0mqijzr3vj4wycykqpjz9xw9fhpbnzz988z2q3nldb5ax0pyrxca"; + sha256 = "0hwa4sxw9sqzivg80nqsi9g1hz8apnnck73x5dvnn1zbwvycx3g9"; }; - vendorSha256 = "063dpq1k5lykp18gshlgg098yvppicv3cz8gjn1mvfhac2rl9yqr"; + vendorSha256 = "1lldi56kah689xf8n1hfpk9qy0gbci62xnjs5jrh54kbgka23gvw"; doCheck = false; diff --git a/pkgs/development/tools/gotests/default.nix b/pkgs/development/tools/gotests/default.nix index 13d3c700ce9..43f221bd324 100644 --- a/pkgs/development/tools/gotests/default.nix +++ b/pkgs/development/tools/gotests/default.nix @@ -17,7 +17,7 @@ buildGoPackage rec { }; meta = { - description = "Generate Go tests from your source code."; + description = "Generate Go tests from your source code"; homepage = "https://github.com/cweill/gotests"; maintainers = with stdenv.lib.maintainers; [ vdemeester ]; license = stdenv.lib.licenses.asl20; diff --git a/pkgs/development/tools/gotestsum/default.nix b/pkgs/development/tools/gotestsum/default.nix index 71bccc74ce6..8ccc1b593fd 100644 --- a/pkgs/development/tools/gotestsum/default.nix +++ b/pkgs/development/tools/gotestsum/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "gotestsum"; - version = "0.5.3"; + version = "0.6.0"; src = fetchFromGitHub { owner = "gotestyourself"; repo = "gotestsum"; rev = "v${version}"; - sha256 = "1jq529m788yp3b6j4dhxgcw7qm1lyxx1ir2vwr41vp7gh17fmwar"; + sha256 = "0w0s2qvwnb69s18gvkkbwsx9zh7yi8ksnnrfpl8az8sybk6m1iaz"; }; - vendorSha256 = "1injixhllv41glb3yz276gjrkiwwkfimrhb367d2pvjpzqmhplan"; + vendorSha256 = "09cifc69z1ashjw1mqgbi0gh90h2sypqyl0jswxxcqk89ibgy3am"; doCheck = false; diff --git a/pkgs/development/tools/gotools/default.nix b/pkgs/development/tools/gotools/default.nix index 11926b3b0c6..606092e8cdc 100644 --- a/pkgs/development/tools/gotools/default.nix +++ b/pkgs/development/tools/gotools/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "gotools-unstable"; - version = "2020-04-21"; - rev = "72e4a01eba4315301fd9ce00c8c2f492580ded8a"; + version = "2020-10-27"; + rev = "eafbe7b904eb2418efc832e36ac634dc09084f10"; src = fetchgit { inherit rev; url = "https://go.googlesource.com/tools"; - sha256 = "0a8c7j4w784w441j3j3bh640vy1g6g214641qv485wyi0xj49anf"; + sha256 = "0884znfbm44f4ddjkm0g7qg2a257kwzv1ismd2m225f3c69n3mdg"; }; # The gopls folder contains a Go submodule which causes a build failure. @@ -25,7 +25,7 @@ buildGoModule rec { rm -rf gopls ''; - vendorSha256 = "0pplmqxrnc8qnr5708igx4dm7rb0hicvhg6lh5hj8zkx38nb19s0"; + vendorSha256 = "18qpjmmjpk322fvf81cafkpl3spv7hpdpymhympmld9isgzggfyz"; doCheck = false; diff --git a/pkgs/development/tools/haskell/haskell-language-server/withWrapper.nix b/pkgs/development/tools/haskell/haskell-language-server/withWrapper.nix new file mode 100644 index 00000000000..09cb60901e4 --- /dev/null +++ b/pkgs/development/tools/haskell/haskell-language-server/withWrapper.nix @@ -0,0 +1,58 @@ +{ lib, supportedGhcVersions ? [ "865" "884" "8102" ], stdenv, haskellPackages +, haskell }: +# +# The recommended way to override this package is +# +# pkgs.haskell-language-server.override { supportedGhcVersions = [ "901" ]; } +# +# for example. Read more about this in the haskell-language-server section of the nixpkgs manual. +# +let + inherit (lib) concatStringsSep concatMapStringsSep take splitString; + getPackages = version: haskell.packages."ghc${version}"; + getMajorVersion = packages: + concatStringsSep "." (take 2 (splitString "." packages.ghc.version)); + tunedHls = hsPkgs: + haskell.lib.justStaticExecutables + (haskell.lib.overrideCabal hsPkgs.haskell-language-server (old: { + postInstall = '' + remove-references-to -t ${hsPkgs.ghc} $out/bin/haskell-language-server + remove-references-to -t ${hsPkgs.shake.data} $out/bin/haskell-language-server + remove-references-to -t ${hsPkgs.js-jquery.data} $out/bin/haskell-language-server + remove-references-to -t ${hsPkgs.js-dgtable.data} $out/bin/haskell-language-server + remove-references-to -t ${hsPkgs.js-flot.data} $out/bin/haskell-language-server + ''; + })); + targets = version: + let packages = getPackages version; + in [ + "haskell-language-server-${packages.ghc.version}" + "haskell-language-server-${getMajorVersion packages}" + ]; + makeSymlinks = version: + concatMapStringsSep "\n" (x: + "ln -s ${ + tunedHls (getPackages version) + }/bin/haskell-language-server $out/bin/${x}") (targets version); + pkg = tunedHls haskellPackages; +in stdenv.mkDerivation { + pname = "haskell-language-server"; + version = haskellPackages.haskell-language-server.version; + buildCommand = '' + mkdir -p $out/bin + ln -s ${pkg}/bin/haskell-language-server $out/bin/haskell-language-server + ln -s ${pkg}/bin/haskell-language-server-wrapper $out/bin/haskell-language-server-wrapper + ${concatMapStringsSep "\n" makeSymlinks supportedGhcVersions} + ''; + meta = haskellPackages.haskell-language-server.meta // { + maintainers = [ lib.maintainers.maralorn ]; + longDescription = '' + This package provides haskell-language-server, haskell-language-server-wrapper, ${ + concatMapStringsSep ", " (x: concatStringsSep ", " (targets x)) + supportedGhcVersions + }. + + You can override the list supportedGhcVersions. + ''; + }; +} diff --git a/pkgs/development/tools/impl/default.nix b/pkgs/development/tools/impl/default.nix index 88b8abd842f..825aa0c1fa6 100644 --- a/pkgs/development/tools/impl/default.nix +++ b/pkgs/development/tools/impl/default.nix @@ -20,7 +20,7 @@ buildGoPackage rec { goDeps = ./deps.nix; meta = with lib; { - description = "impl generates method stubs for implementing an interface."; + description = "Generate method stubs for implementing an interface"; homepage = "https://github.com/josharian/impl"; license = licenses.mit; maintainers = with maintainers; [ kalbasit ]; diff --git a/pkgs/development/tools/ineffassign/default.nix b/pkgs/development/tools/ineffassign/default.nix index 2be22301cdb..85c643537af 100644 --- a/pkgs/development/tools/ineffassign/default.nix +++ b/pkgs/development/tools/ineffassign/default.nix @@ -20,7 +20,7 @@ buildGoPackage rec { }; meta = with lib; { - description = "Detect ineffectual assignments in Go code."; + description = "Detect ineffectual assignments in Go code"; homepage = "https://github.com/gordonklaus/ineffassign"; license = licenses.mit; maintainers = with maintainers; [ kalbasit ]; diff --git a/pkgs/development/tools/interfacer/default.nix b/pkgs/development/tools/interfacer/default.nix index ff59ce50482..b7f568f4d2b 100644 --- a/pkgs/development/tools/interfacer/default.nix +++ b/pkgs/development/tools/interfacer/default.nix @@ -22,7 +22,7 @@ buildGoPackage rec { goDeps = ./deps.nix; meta = with lib; { - description = "A linter that suggests interface types."; + description = "A linter that suggests interface types"; homepage = "https://github.com/mvdan/interfacer"; license = licenses.bsd3; maintainers = with maintainers; [ kalbasit ]; diff --git a/pkgs/development/tools/irony-server/default.nix b/pkgs/development/tools/irony-server/default.nix index 228a82f6008..cc56b27ca2d 100644 --- a/pkgs/development/tools/irony-server/default.nix +++ b/pkgs/development/tools/irony-server/default.nix @@ -16,7 +16,7 @@ stdenv.mkDerivation { ]; meta = with stdenv.lib; { - description = "The server part of irony."; + description = "The server part of irony"; homepage = "https://melpa.org/#/irony"; maintainers = [ maintainers.deepfire ]; platforms = platforms.unix; diff --git a/pkgs/development/tools/jbake/default.nix b/pkgs/development/tools/jbake/default.nix index ad127b94960..44d537f9762 100644 --- a/pkgs/development/tools/jbake/default.nix +++ b/pkgs/development/tools/jbake/default.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { doCheck = true; meta = with stdenv.lib; { - description = "JBake is a Java based, open source, static site/blog generator for developers & designers"; + description = "Java based, open source, static site/blog generator for developers & designers"; homepage = "https://jbake.org/"; license = licenses.mit; maintainers = with maintainers; [ moaxcp ]; diff --git a/pkgs/development/tools/jsduck/default.nix b/pkgs/development/tools/jsduck/default.nix index 8748fb8e512..233b3933876 100644 --- a/pkgs/development/tools/jsduck/default.nix +++ b/pkgs/development/tools/jsduck/default.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { passthru.updateScript = bundlerUpdateScript "jsduck"; meta = with lib; { - description = "Simple JavaScript Duckumentation generator."; + description = "Simple JavaScript Duckumentation generator"; homepage = "https://github.com/senchalabs/jsduck"; license = with licenses; gpl3; maintainers = with maintainers; [ periklis nicknovitski ]; diff --git a/pkgs/development/tools/kind/default.nix b/pkgs/development/tools/kind/default.nix index 6ea2c87f888..55f0a0e9f30 100644 --- a/pkgs/development/tools/kind/default.nix +++ b/pkgs/development/tools/kind/default.nix @@ -4,16 +4,16 @@ with stdenv.lib; buildGoModule rec { pname = "kind"; - version = "0.8.1"; + version = "0.9.0"; src = fetchFromGitHub { rev = "v${version}"; owner = "kubernetes-sigs"; repo = "kind"; - sha256 = "0r301nqvycik8fwlghq0cymmq4rm7xp8haj39i2nynxyw8zk6zym"; + sha256 = "1kyjmlp1kmr3lwylnya6w392j1qpqgbvcacwpnz3ifyh3pbv32qr"; }; - vendorSha256 = "1qvbm8v8yah6r6cw1cvdw79yiwxb2amzdkkzvzbwigy0j4bvn9mi"; + vendorSha256 = "04fmqh6lhvvzpvf1l2xk1r8687k5jx2lb5199rgmjbfnjgsa0q2d"; doCheck = false; @@ -21,7 +21,7 @@ buildGoModule rec { nativeBuildInputs = [ installShellFiles ]; postInstall = '' - for shell in bash zsh; do + for shell in bash fish zsh; do $out/bin/kind completion $shell > kind.$shell installShellCompletion kind.$shell done diff --git a/pkgs/development/tools/knightos/kcc/default.nix b/pkgs/development/tools/knightos/kcc/default.nix index 49851dd0c07..2ec7d7f2020 100644 --- a/pkgs/development/tools/knightos/kcc/default.nix +++ b/pkgs/development/tools/knightos/kcc/default.nix @@ -21,5 +21,6 @@ stdenv.mkDerivation rec { description = "KnightOS C compiler"; license = licenses.gpl2Plus; maintainers = with maintainers; [ siraben ]; + platforms = platforms.unix; }; } diff --git a/pkgs/development/tools/knightos/kimg/default.nix b/pkgs/development/tools/knightos/kimg/default.nix index b6f490e1d9d..bd4320637dc 100644 --- a/pkgs/development/tools/knightos/kimg/default.nix +++ b/pkgs/development/tools/knightos/kimg/default.nix @@ -22,5 +22,6 @@ stdenv.mkDerivation rec { description = "Converts image formats supported by ImageMagick to the KnightOS image format"; license = licenses.mit; maintainers = with maintainers; [ siraben ]; + platforms = platforms.unix; }; } diff --git a/pkgs/development/tools/knightos/kpack/default.nix b/pkgs/development/tools/knightos/kpack/default.nix index 96af43e6160..c1ecb963d24 100644 --- a/pkgs/development/tools/knightos/kpack/default.nix +++ b/pkgs/development/tools/knightos/kpack/default.nix @@ -23,5 +23,6 @@ stdenv.mkDerivation rec { description = "A tool to create or extract KnightOS packages"; license = licenses.lgpl2Only; maintainers = with maintainers; [ siraben ]; + platforms = platforms.unix; }; } diff --git a/pkgs/development/tools/knightos/mktiupgrade/default.nix b/pkgs/development/tools/knightos/mktiupgrade/default.nix new file mode 100644 index 00000000000..171c1671b33 --- /dev/null +++ b/pkgs/development/tools/knightos/mktiupgrade/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchFromGitHub, cmake, asciidoc }: + +stdenv.mkDerivation rec { + pname = "mktiupgrade"; + version = "1.1.6"; + + src = fetchFromGitHub { + owner = "KnightOS"; + repo = "mktiupgrade"; + rev = version; + sha256 = "15y3rxvv7ipgc80wrvrpksxzdyqr21ywysc9hg6s7d3w8lqdq8dm"; + }; + + nativeBuildInputs = [ asciidoc cmake ]; + + hardeningDisable = [ "format" ]; + + meta = with stdenv.lib; { + homepage = "https://knightos.org/"; + description = "Makes TI calculator upgrade files from ROM dumps"; + license = licenses.mit; + maintainers = with maintainers; [ siraben ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/development/tools/knightos/patchrom/default.nix b/pkgs/development/tools/knightos/patchrom/default.nix index ed34053d835..9feab36ec82 100644 --- a/pkgs/development/tools/knightos/patchrom/default.nix +++ b/pkgs/development/tools/knightos/patchrom/default.nix @@ -24,5 +24,6 @@ stdenv.mkDerivation rec { description = "Patches jumptables into TI calculator ROM files and generates an include file"; license = licenses.mit; maintainers = with maintainers; [ siraben ]; + platforms = platforms.unix; }; } diff --git a/pkgs/development/tools/knightos/scas/default.nix b/pkgs/development/tools/knightos/scas/default.nix index ad21e68eed8..2269c3781a5 100644 --- a/pkgs/development/tools/knightos/scas/default.nix +++ b/pkgs/development/tools/knightos/scas/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://knightos.org/"; - description = "Assembler and linker for the Z80."; + description = "Assembler and linker for the Z80"; license = licenses.mit; maintainers = with maintainers; [ siraben ]; }; diff --git a/pkgs/development/tools/knightos/z80e/default.nix b/pkgs/development/tools/knightos/z80e/default.nix new file mode 100644 index 00000000000..6aad8f687e7 --- /dev/null +++ b/pkgs/development/tools/knightos/z80e/default.nix @@ -0,0 +1,27 @@ +{ stdenv, fetchFromGitHub, cmake, knightos-scas, readline, SDL2 }: + +stdenv.mkDerivation rec { + pname = "z80e"; + version = "0.5.0"; + + src = fetchFromGitHub { + owner = "KnightOS"; + repo = "z80e"; + rev = version; + sha256 = "18nnip6nv1pq19bxgd07fv7ci3c5yj8d9cip97a4zsfab7bmbq6k"; + }; + + nativeBuildInputs = [ cmake knightos-scas ]; + + buildInputs = [ readline SDL2 ]; + + cmakeFlags = [ "-Denable-sdl=YES" ]; + + meta = with stdenv.lib; { + homepage = "https://knightos.org/"; + description = "A Z80 calculator emulator and debugger"; + license = licenses.mit; + maintainers = with maintainers; [ siraben ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/development/tools/kythe/default.nix b/pkgs/development/tools/kythe/default.nix index e9748d6e45e..601634b3184 100644 --- a/pkgs/development/tools/kythe/default.nix +++ b/pkgs/development/tools/kythe/default.nix @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "A pluggable, (mostly) language-agnostic ecosystem for building tools that work with code."; + description = "A pluggable, (mostly) language-agnostic ecosystem for building tools that work with code"; longDescription = '' The Kythe project was founded to provide and support tools and standards that encourage interoperability among programs that manipulate source diff --git a/pkgs/development/tools/lazygit/default.nix b/pkgs/development/tools/lazygit/default.nix index a4107ad1100..65c3a194897 100644 --- a/pkgs/development/tools/lazygit/default.nix +++ b/pkgs/development/tools/lazygit/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "lazygit"; - version = "0.23.2"; + version = "0.23.6"; src = fetchFromGitHub { owner = "jesseduffield"; repo = pname; rev = "v${version}"; - sha256 = "sha256-G/oAKIG0TSEjaVi6vN2wg/apOztGLiqqYLfZy6Tmmgc="; + sha256 = "0afs3h8npbzmcrzm6kzfdva5id3zyifhhsh7zgyrxkmw60qhl498"; }; vendorSha256 = null; diff --git a/pkgs/development/tools/librarian-puppet-go/default.nix b/pkgs/development/tools/librarian-puppet-go/default.nix index 7f40824c472..6144b533d6d 100644 --- a/pkgs/development/tools/librarian-puppet-go/default.nix +++ b/pkgs/development/tools/librarian-puppet-go/default.nix @@ -17,7 +17,7 @@ buildGoPackage rec { meta = with lib; { inherit (src.meta) homepage; - description = "librarian-puppet implementation in go."; + description = "librarian-puppet implementation in go"; license = licenses.mit; maintainers = with maintainers; [ womfoo ]; platforms = [ "x86_64-linux" ]; diff --git a/pkgs/development/tools/maligned/default.nix b/pkgs/development/tools/maligned/default.nix index 15d14df3ff7..06cd23e40f4 100644 --- a/pkgs/development/tools/maligned/default.nix +++ b/pkgs/development/tools/maligned/default.nix @@ -21,7 +21,7 @@ buildGoPackage rec { goDeps = ./deps.nix; meta = with lib; { - description = "Tool to detect Go structs that would take less memory if their fields were sorted."; + description = "Tool to detect Go structs that would take less memory if their fields were sorted"; homepage = "https://github.com/mdempsky/maligned"; license = licenses.bsd3; maintainers = with maintainers; [ kalbasit ]; diff --git a/pkgs/development/tools/minizinc/default.nix b/pkgs/development/tools/minizinc/default.nix index 8cd4fc9f7f4..1d01ef97f40 100644 --- a/pkgs/development/tools/minizinc/default.nix +++ b/pkgs/development/tools/minizinc/default.nix @@ -36,7 +36,7 @@ stdenv.mkDerivation { meta = with stdenv.lib; { homepage = "https://www.minizinc.org/"; - description = "MiniZinc is a medium-level constraint modelling language."; + description = "A medium-level constraint modelling language"; longDescription = '' MiniZinc is a medium-level constraint modelling diff --git a/pkgs/development/tools/misc/act/default.nix b/pkgs/development/tools/misc/act/default.nix index 358fdd03693..9456335d72a 100644 --- a/pkgs/development/tools/misc/act/default.nix +++ b/pkgs/development/tools/misc/act/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "act"; - version = "0.2.15"; + version = "0.2.16"; src = fetchFromGitHub { owner = "nektos"; repo = pname; rev = "v${version}"; - sha256 = "17mh7nxzj597vn51c92ridnvfz17rq9sxynfpx9lj32hqw2r45ap"; + sha256 = "0zhn6av1adphkk9g13m5na63r8fqcjw8wibcja9v9mbw886zcc3p"; }; vendorSha256 = "0bcrw3hf92m7n58lrlm0vj1wiwwy82q2rl1a725q3d6xwvi5kh9h"; diff --git a/pkgs/development/tools/misc/asls/default.nix b/pkgs/development/tools/misc/asls/default.nix index 5b53456deac..0e08acdeb45 100644 --- a/pkgs/development/tools/misc/asls/default.nix +++ b/pkgs/development/tools/misc/asls/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { pname = "asls"; - version = "0.5.0"; + version = "0.5.1"; src = fetchurl { url = "https://github.com/saulecabrera/asls/releases/download/v${version}/bin.tar.gz"; - sha256 = "1h6r2lbf54aylzmbiy74ys42fhjv9q824bdrcp40gxx1v2yjc5h5"; + sha256 = "05kp44p4q4sdykfw0b4k9j3qdp0qvwgjbs48ncmnd0ass0xrmi3s"; }; buildInputs = [ erlangR22 ]; diff --git a/pkgs/development/tools/misc/bsdbuild/default.nix b/pkgs/development/tools/misc/bsdbuild/default.nix index 35406c48534..6ba8064c094 100644 --- a/pkgs/development/tools/misc/bsdbuild/default.nix +++ b/pkgs/development/tools/misc/bsdbuild/default.nix @@ -49,7 +49,7 @@ EOF meta = { homepage = "http://bsdbuild.hypertriton.com"; - description = "A cross-platform build system."; + description = "A cross-platform build system"; longDescription = '' BSDBuild is a cross-platform build system. Derived from the diff --git a/pkgs/development/tools/misc/ccache/default.nix b/pkgs/development/tools/misc/ccache/default.nix index e0a6a8065b5..d87de2e648a 100644 --- a/pkgs/development/tools/misc/ccache/default.nix +++ b/pkgs/development/tools/misc/ccache/default.nix @@ -2,13 +2,13 @@ let ccache = stdenv.mkDerivation rec { pname = "ccache"; - version = "3.7.11"; + version = "3.7.12"; src = fetchFromGitHub { owner = "ccache"; repo = "ccache"; rev = "v${version}"; - sha256 = "03c6riz4vb0jipplk69c1j8arjjrjn676kglsrzqf8cidrh8j91c"; + sha256 = "1xnv4g4n1jk1i98sa53k8w6q7hbwbw62svs30lssppysbrv8x3gz"; }; nativeBuildInputs = [ asciidoc-full autoreconfHook gperf perl ]; diff --git a/pkgs/development/tools/misc/ccls/default.nix b/pkgs/development/tools/misc/ccls/default.nix index ba57ef561f3..16365a462a9 100644 --- a/pkgs/development/tools/misc/ccls/default.nix +++ b/pkgs/development/tools/misc/ccls/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "ccls"; - version = "0.20190823.6"; + version = "0.20201025"; src = fetchFromGitHub { owner = "MaskRay"; repo = "ccls"; rev = version; - sha256 = "11h5nwk4qqshf3i8yr4bxpnvmidrhkzd0zxhf1xqv8cv6r08k47f"; + sha256 = "13v00q1bz8g0ckw1sv0zyicbc44irc00vhwxdv3vvwlvylm7s21p"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/tools/misc/circleci-cli/default.nix b/pkgs/development/tools/misc/circleci-cli/default.nix index b434358e1d2..255403a0c27 100644 --- a/pkgs/development/tools/misc/circleci-cli/default.nix +++ b/pkgs/development/tools/misc/circleci-cli/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "circleci-cli"; - version = "0.1.9454"; + version = "0.1.10993"; src = fetchFromGitHub { owner = "CircleCI-Public"; repo = pname; rev = "v${version}"; - sha256 = "0ld7lb69wmhyrpqjaj1pddx93x529qk2fzyrwlipglwn3mbala5a"; + sha256 = "1pi31zcg4nvrsyb66znf7g51z51qfw56kml6l2vgg4dbpwmzg87h"; }; - vendorSha256 = "1zd95n9k2fags0qh3wvjinxv1ahygr958mmiax2kz117yipaz4rb"; + vendorSha256 = "0fjj8hh0s0jcgz48japbcfpl4ihba2drvvxlyg69j8hrcb9lmi4l"; doCheck = false; diff --git a/pkgs/development/tools/misc/cli11/default.nix b/pkgs/development/tools/misc/cli11/default.nix index 0d058ef1f88..25ec42eac8e 100644 --- a/pkgs/development/tools/misc/cli11/default.nix +++ b/pkgs/development/tools/misc/cli11/default.nix @@ -33,7 +33,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; meta = with stdenv.lib; { - description = "CLI11 is a command line parser for C++11"; + description = "Command line parser for C++11"; homepage = "https://github.com/CLIUtils/CLI11"; platforms = [ "x86_64-linux" ]; maintainers = with maintainers; [ nand0p ]; diff --git a/pkgs/development/tools/misc/clojure-lsp/default.nix b/pkgs/development/tools/misc/clojure-lsp/default.nix index 65f12bfbb09..1641df1562a 100644 --- a/pkgs/development/tools/misc/clojure-lsp/default.nix +++ b/pkgs/development/tools/misc/clojure-lsp/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "clojure-lsp"; - version = "20200828T065654"; + version = "20201009T224414"; src = fetchurl { url = "https://github.com/snoe/clojure-lsp/releases/download/release-${version}/${pname}"; - sha256 = "1399xjcnnb7vazy1jv3h7lnh1dyn81yk2bwi6ai991a9fsinjnf2"; + sha256 = "1az87b4cq6yyibs4knd0ywd0qfgmfzai4bqry4b7h2ycnfhfxdpa"; }; dontUnpack = true; diff --git a/pkgs/development/tools/misc/dbench/default.nix b/pkgs/development/tools/misc/dbench/default.nix index ad46534fcfa..49fb1efbd4a 100644 --- a/pkgs/development/tools/misc/dbench/default.nix +++ b/pkgs/development/tools/misc/dbench/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchgit, autoconf, popt, zlib }: +{ stdenv, fetchgit, autoconf, popt, zlib, rpcsvc-proto, libtirpc }: stdenv.mkDerivation { name = "dbench-2013-01-01"; @@ -9,7 +9,10 @@ stdenv.mkDerivation { sha256 = "16lcbwmmx8z5i73k3dnf54yffrpx7ql3y9k3cpkss9dcyxb1p83i"; }; - buildInputs = [ autoconf popt zlib ]; + nativeBuildInputs = [ autoconf rpcsvc-proto ]; + buildInputs = [ popt zlib libtirpc ]; + NIX_CFLAGS_COMPILE = [ "-I${libtirpc.dev}/include/tirpc" ]; + NIX_LDFLAGS = [ "-ltirpc" ]; patches = [ # patch has been also sent upstream and might be included in future versions diff --git a/pkgs/development/tools/misc/editorconfig-checker/default.nix b/pkgs/development/tools/misc/editorconfig-checker/default.nix index 3975ad3511f..741854a507d 100644 --- a/pkgs/development/tools/misc/editorconfig-checker/default.nix +++ b/pkgs/development/tools/misc/editorconfig-checker/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "editorconfig-checker"; - version = "2.1.0"; + version = "2.2.0"; src = fetchFromGitHub { owner = "editorconfig-checker"; repo = "editorconfig-checker"; rev = "${version}"; - sha256 = "09v8gqwcaay3bqbidparmg20dy0mvlrzh34591hanbrx3cwhrz3f"; + sha256 = "18gz94h2x1z6g6r7v9cdixkbcaigd7cl08af6smlkaa89j0aki32"; }; - vendorSha256 = "132blcdw3lywxhqslkcpwwvkzl4cpbbkhb7ba8mrvfgl5kvfm1q0"; + vendorSha256 = "1z4j8vm9mnhjhhmhlj0ycs8b1wpm7lhsfqjnk7w8gfapvj3yfk6h"; doCheck = false; diff --git a/pkgs/development/tools/misc/hydra/common.nix b/pkgs/development/tools/misc/hydra/common.nix index 4e9daab9bf1..4af9fe04587 100644 --- a/pkgs/development/tools/misc/hydra/common.nix +++ b/pkgs/development/tools/misc/hydra/common.nix @@ -66,6 +66,7 @@ let TextDiff TextTable XMLSimple + YAML nix nix.perl-bindings git diff --git a/pkgs/development/tools/misc/hydra/default.nix b/pkgs/development/tools/misc/hydra/default.nix index a6b0383d54f..7aa1e05a88e 100644 --- a/pkgs/development/tools/misc/hydra/default.nix +++ b/pkgs/development/tools/misc/hydra/default.nix @@ -1,40 +1,17 @@ { fetchFromGitHub, nixStable, callPackage, nixFlakes, nixosTests }: { - # Package for phase-1 of the db migration for Hydra. - # https://github.com/NixOS/hydra/pull/711 - hydra-migration = callPackage ./common.nix { - version = "2020-02-10"; - src = fetchFromGitHub { - owner = "NixOS"; - repo = "hydra"; - rev = "add4f610ce6f206fb44702b5a894d877b3a30e3a"; - sha256 = "1d8hdgjx2ys0zmixi2ydmimdq7ml20h1ji4amwawcyw59kssh6l3"; - }; - nix = nixStable; - migration = true; - - tests = { - db-migration = nixosTests.hydra-db-migration.mig; - basic = nixosTests.hydra.hydra-migration; - }; - }; - - # Hydra from latest master branch. Contains breaking changes, - # so when having an older version, `pkgs.hydra-migration` should be deployed first. - hydra-unstable = callPackage ./common.nix { - version = "2020-09-02"; + version = "2020-10-20"; src = fetchFromGitHub { owner = "NixOS"; repo = "hydra"; - rev = "e707990e2d6afab203c7ef1d769d49c564eff151"; - sha256 = "0iilf953f6s58szzyd1hzc9b2b2yw8lhbsb8xrb08szpfz7ifwqa"; + rev = "79d34ed7c93af2daf32cf44ee0e3e0768f13f97c"; + sha256 = "1lql899430137l6ghnhyz0ivkayy83fdr087ck2wq3gf1jv8pccj"; }; nix = nixFlakes; tests = { - db-migration = nixosTests.hydra-db-migration.mig; basic = nixosTests.hydra.hydra-unstable; }; }; diff --git a/pkgs/development/tools/misc/iozone/default.nix b/pkgs/development/tools/misc/iozone/default.nix index e6beeca1d72..93e2673be63 100644 --- a/pkgs/development/tools/misc/iozone/default.nix +++ b/pkgs/development/tools/misc/iozone/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, gnuplot }: +{ stdenv, lib, fetchurl, gnuplot }: let target = if stdenv.hostPlatform.system == "i686-linux" then @@ -13,11 +13,12 @@ let in stdenv.mkDerivation rec { - name = "iozone-3.471"; + pname = "iozone"; + version = "3.490"; src = fetchurl { - url = "http://www.iozone.org/src/current/iozone3_471.tar"; - sha256 = "0w63b3d4ws1sm52lpdd08sl7n4ay438dl3wy0q9la12iq81rglid"; + url = "http://www.iozone.org/src/current/iozone${lib.replaceStrings ["."] ["_"] version}.tar"; + sha256 = "1vagmm2k2bzlpahl2a2arpfmk3cd5nzhxi842a8mdag2b8iv9bay"; }; license = fetchurl { diff --git a/pkgs/development/tools/misc/reviewdog/default.nix b/pkgs/development/tools/misc/reviewdog/default.nix index de8a113d101..fccee0ede2b 100644 --- a/pkgs/development/tools/misc/reviewdog/default.nix +++ b/pkgs/development/tools/misc/reviewdog/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "reviewdog"; - version = "0.10.2"; + version = "0.11.0"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "1xi5dfdy66qa6xvy60fk2lmp9gxyi0nfkyvybcazn8mrd99hfh6l"; + sha256 = "0n7hk3va25ym8sb900i1s1hjszgwrfl7gfsjbj1m330fidh3q6jc"; }; - vendorSha256 = "0cxi01jxg89lsk91dv782746i8g9ksanx8igmgafq9vq25lld7yg"; + vendorSha256 = "0xscirzi0gqww33ngwh29jiylarj0w5snn9kvv43wfrphb6c79s5"; doCheck = false; diff --git a/pkgs/development/tools/misc/swig/3.x.nix b/pkgs/development/tools/misc/swig/3.x.nix index 75b0113b497..853a240ffc3 100644 --- a/pkgs/development/tools/misc/swig/3.x.nix +++ b/pkgs/development/tools/misc/swig/3.x.nix @@ -27,7 +27,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "SWIG, an interface compiler that connects C/C++ code to higher-level languages"; + description = "An interface compiler that connects C/C++ code to higher-level languages"; homepage = "http://swig.org/"; # Different types of licenses available: http://www.swig.org/Release/LICENSE . license = licenses.gpl3Plus; diff --git a/pkgs/development/tools/misc/texinfo/common.nix b/pkgs/development/tools/misc/texinfo/common.nix index f0f4c269fae..057e52615ac 100644 --- a/pkgs/development/tools/misc/texinfo/common.nix +++ b/pkgs/development/tools/misc/texinfo/common.nix @@ -1,6 +1,6 @@ { version, sha256 }: -{ stdenv, buildPackages, fetchurl, perl, xz +{ stdenv, buildPackages, fetchurl, perl, xz, gettext # we are a dependency of gcc, this simplifies bootstraping , interactive ? false, ncurses, procps @@ -39,6 +39,7 @@ stdenv.mkDerivation { buildInputs = [ xz.bin ] ++ optionals stdenv.isSunOS [ libiconv gawk ] + ++ optionals stdenv.isDarwin [ gettext ] ++ optional interactive ncurses; configureFlags = [ "PERL=${buildPackages.perl}/bin/perl" ] diff --git a/pkgs/development/tools/misc/tockloader/default.nix b/pkgs/development/tools/misc/tockloader/default.nix index 298e6f7c9d5..3aff6c6d36c 100644 --- a/pkgs/development/tools/misc/tockloader/default.nix +++ b/pkgs/development/tools/misc/tockloader/default.nix @@ -20,7 +20,7 @@ python3Packages.buildPythonApplication rec { meta = with lib; { homepage = "https://github.com/tock/tockloader"; license = licenses.mit; - description = "Tool for programming Tock onto hardware boards."; + description = "Tool for programming Tock onto hardware boards"; maintainers = with maintainers; [ hexa ]; }; } diff --git a/pkgs/development/tools/mockgen/default.nix b/pkgs/development/tools/mockgen/default.nix index def5e892e2f..104988eb213 100644 --- a/pkgs/development/tools/mockgen/default.nix +++ b/pkgs/development/tools/mockgen/default.nix @@ -15,7 +15,7 @@ buildGoModule rec { subPackages = [ "mockgen" ]; meta = with lib; { - description = "GoMock is a mocking framework for the Go programming language."; + description = "GoMock is a mocking framework for the Go programming language"; homepage = "https://github.com/golang/mock"; license = licenses.asl20; maintainers = with maintainers; [ bouk ]; diff --git a/pkgs/development/tools/nsis/default.nix b/pkgs/development/tools/nsis/default.nix index 33be56c539d..303ea6a00fe 100644 --- a/pkgs/development/tools/nsis/default.nix +++ b/pkgs/development/tools/nsis/default.nix @@ -48,7 +48,7 @@ stdenv.mkDerivation rec { installTargets = [ "install-compiler" ]; meta = with stdenv.lib; { - description = "NSIS is a free scriptable win32 installer/uninstaller system that doesn't suck and isn't huge"; + description = "A free scriptable win32 installer/uninstaller system that doesn't suck and isn't huge"; homepage = "https://nsis.sourceforge.io/"; license = licenses.zlib; platforms = platforms.linux; diff --git a/pkgs/development/tools/ocaml/ocamlformat/default.nix b/pkgs/development/tools/ocaml/ocamlformat/default.nix index 5b607d3d6c6..1de95187af2 100644 --- a/pkgs/development/tools/ocaml/ocamlformat/default.nix +++ b/pkgs/development/tools/ocaml/ocamlformat/default.nix @@ -1,115 +1,43 @@ -{ lib, fetchurl, fetchzip, ocamlPackages }: +{ lib, fetchurl, fetchzip, callPackage }: -with ocamlPackages; - -let - mkOCamlformat = { - version, - sha256, - buildInputs, - useDune2 ? true, - tarballName ? "ocamlformat-${version}.tbz", - # The 'src' argument can be removed when 0.11.0 is pruned - src ? fetchurl { - url = "https://github.com/ocaml-ppx/ocamlformat/releases/download/${version}/${tarballName}"; - inherit sha256; - } - }: - buildDunePackage rec { - pname = "ocamlformat"; - - minimumOCamlVersion = "4.06"; - - inherit src version useDune2 buildInputs; - - meta = { - homepage = "https://github.com/ocaml-ppx/ocamlformat"; - description = "Auto-formatter for OCaml code"; - maintainers = [ lib.maintainers.Zimmi48 lib.maintainers.marsam ]; - license = lib.licenses.mit; - }; - }; - - post_0_11_buildInputs = [ - base - cmdliner - fpath - ocaml-migrate-parsetree - odoc - re - stdio - uuseg - uutf - ]; - - post_0_14_buildInputs = [ - base - cmdliner - fpath - ocaml-migrate-parsetree - odoc - re - stdio - uuseg - uutf - fix - menhir - ]; -in +let mkOCamlformat = callPackage ./generic.nix; in # Older versions should be removed when their usage decrease # This script scraps Github looking for OCamlformat's options and versions usage: # https://gist.github.com/Julow/110dc94308d6078225e0665e3eccd433 rec { - ocamlformat_0_11_0 = mkOCamlformat rec { + ocamlformat_0_11_0 = mkOCamlformat { version = "0.11.0"; - src = fetchzip { - url = "https://github.com/ocaml-ppx/ocamlformat/archive/0.11.0.tar.gz"; - inherit sha256; - }; - sha256 = "0zvjn71jd4d3znnpgh0yphb2w8ggs457b6bl6cg1fmpdgxnds6yx"; - useDune2 = false; - buildInputs = post_0_11_buildInputs; }; ocamlformat_0_12 = mkOCamlformat { version = "0.12"; - sha256 = "1zi8x597dhp2822j6j28s84yyiqppl7kykpwqqclx6ybypvlzdpj"; - useDune2 = false; - buildInputs = post_0_11_buildInputs; }; ocamlformat_0_13_0 = mkOCamlformat rec { version = "0.13.0"; - sha256 = "0ki2flqi3xkhw9mfridivb6laxm7gml8rj9qz42vqmy9yx76jjxq"; tarballName = "ocamlformat-${version}-2.tbz"; - useDune2 = false; - buildInputs = post_0_11_buildInputs; }; ocamlformat_0_14_0 = mkOCamlformat { version = "0.14.0"; - sha256 = "070c0x6z5y0lyls56zm34g8lyc093wkr0jfp50dvrkr9fk1sx2wi"; - buildInputs = post_0_14_buildInputs; }; ocamlformat_0_14_1 = mkOCamlformat { version = "0.14.1"; - sha256 = "03wn46xib63748157xchj7gflkw5000fcjw6n89h9g82q9slazaa"; - buildInputs = post_0_14_buildInputs; }; ocamlformat_0_14_2 = mkOCamlformat { version = "0.14.2"; - sha256 = "16phz1sg9b070p6fm8d42j0piizg05vghdjmw8aj7xm82b1pm7sz"; - buildInputs = post_0_14_buildInputs; + }; + + ocamlformat_0_14_3 = mkOCamlformat { + version = "0.14.3"; }; ocamlformat_0_15_0 = mkOCamlformat { version = "0.15.0"; - sha256 = "0190vz59n6ma9ca1m3syl3mc8i1smj1m3d8x1jp21f710y4llfr6"; - buildInputs = post_0_14_buildInputs; }; ocamlformat = ocamlformat_0_15_0; diff --git a/pkgs/development/tools/ocaml/ocamlformat/generic.nix b/pkgs/development/tools/ocaml/ocamlformat/generic.nix new file mode 100644 index 00000000000..c39ade7c074 --- /dev/null +++ b/pkgs/development/tools/ocaml/ocamlformat/generic.nix @@ -0,0 +1,68 @@ +{ lib, fetchurl, fetchzip, ocamlPackages +, version +, tarballName ? "ocamlformat-${version}.tbz", +}: + +let src = + if version == "0.11.0" + then fetchzip { + url = "https://github.com/ocaml-ppx/ocamlformat/archive/0.11.0.tar.gz"; + sha256 = "0zvjn71jd4d3znnpgh0yphb2w8ggs457b6bl6cg1fmpdgxnds6yx"; + } else fetchurl { + url = "https://github.com/ocaml-ppx/ocamlformat/releases/download/${version}/${tarballName}"; + sha256 = { + "0.12" = "1zi8x597dhp2822j6j28s84yyiqppl7kykpwqqclx6ybypvlzdpj"; + "0.13.0" = "0ki2flqi3xkhw9mfridivb6laxm7gml8rj9qz42vqmy9yx76jjxq"; + "0.14.0" = "070c0x6z5y0lyls56zm34g8lyc093wkr0jfp50dvrkr9fk1sx2wi"; + "0.14.1" = "03wn46xib63748157xchj7gflkw5000fcjw6n89h9g82q9slazaa"; + "0.14.2" = "16phz1sg9b070p6fm8d42j0piizg05vghdjmw8aj7xm82b1pm7sz"; + "0.14.3" = "13pfakdncddm41cp61p0l98scawbvhx1q4zdsglv7ph87l7zwqfl"; + "0.15.0" = "0190vz59n6ma9ca1m3syl3mc8i1smj1m3d8x1jp21f710y4llfr6"; + }."${version}"; + } +; in + +with ocamlPackages; + +buildDunePackage rec { + pname = "ocamlformat"; + inherit src version; + + minimumOCamlVersion = "4.06"; + + useDune2 = lib.versionAtLeast version "0.14"; + + buildInputs = + if lib.versionAtLeast version "0.14" + then [ + base + cmdliner + fpath + ocaml-migrate-parsetree + odoc + re + stdio + uuseg + uutf + fix + menhir + ] else [ + base + cmdliner + fpath + ocaml-migrate-parsetree + odoc + re + stdio + uuseg + uutf + ]; + + meta = { + homepage = "https://github.com/ocaml-ppx/ocamlformat"; + description = "Auto-formatter for OCaml code"; + maintainers = [ lib.maintainers.Zimmi48 lib.maintainers.marsam ]; + license = lib.licenses.mit; + }; +} + diff --git a/pkgs/development/tools/ocaml/ocp-build/default.nix b/pkgs/development/tools/ocaml/ocp-build/default.nix index 4ebea676621..57db5161224 100644 --- a/pkgs/development/tools/ocaml/ocp-build/default.nix +++ b/pkgs/development/tools/ocaml/ocp-build/default.nix @@ -1,24 +1,19 @@ -{ stdenv, fetchpatch, fetchFromGitHub, ocaml, findlib, ncurses }: +{ stdenv, fetchFromGitHub, ocaml, findlib, ncurses, cmdliner, re }: let - version = "1.99.19-beta"; + version = "1.99.21"; in stdenv.mkDerivation { - name = "ocaml${ocaml.version}-ocp-build-${version}"; + name = "ocaml${ocaml.version}-ocp-build-${version}-beta"; src = fetchFromGitHub { owner = "OCamlPro"; repo = "ocp-build"; - rev = version; - sha256 = "162k5l0cxyqanxlml5v8mqapdq5qbqc9m4b8wdjq7mf523b3h2zj"; + rev = "v${version}"; + sha256 = "1641xzik98c7xnjwxpacijd6d9jzx340fmdn6i372z8h554jjlg9"; }; - patches = stdenv.lib.optional (stdenv.lib.versionAtLeast ocaml.version "4.08") (fetchpatch { - url = "https://raw.githubusercontent.com/ocaml/opam-repository/master/packages/ocp-pp/ocp-pp.1.99.19-beta/files/0001-Fix-ocp-pp-for-changes-in-compiler-libs.patch"; - sha256 = "0s0s2hh4d7cmwd6i7ixjgb79vij0r1v54m0vwwi26b3fips09qyn"; - }); - - buildInputs = [ ocaml findlib ]; + buildInputs = [ ocaml findlib cmdliner re ]; propagatedBuildInputs = [ ncurses ]; preInstall = "mkdir -p $out/bin"; preConfigure = '' diff --git a/pkgs/development/tools/omniorb/default.nix b/pkgs/development/tools/omniorb/default.nix index 350407098a4..2ab8fa23dde 100644 --- a/pkgs/development/tools/omniorb/default.nix +++ b/pkgs/development/tools/omniorb/default.nix @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { hardeningDisable = [ "format" ]; meta = with stdenv.lib; { - description = "omniORB is a robust high performance CORBA ORB for C++ and Python. It is freely available under the terms of the GNU Lesser General Public License (for the libraries), and GNU General Public License (for the tools). omniORB is largely CORBA 2.6 compliant"; + description = "A robust high performance CORBA ORB for C++ and Python. It is freely available under the terms of the GNU Lesser General Public License (for the libraries), and GNU General Public License (for the tools). omniORB is largely CORBA 2.6 compliant"; homepage = "http://omniorb.sourceforge.net/"; license = licenses.gpl2Plus; maintainers = with maintainers; [ smironov ]; diff --git a/pkgs/development/tools/open-policy-agent/default.nix b/pkgs/development/tools/open-policy-agent/default.nix index d3fd81a0f94..d6dbbcc493d 100644 --- a/pkgs/development/tools/open-policy-agent/default.nix +++ b/pkgs/development/tools/open-policy-agent/default.nix @@ -2,16 +2,18 @@ buildGoPackage rec { pname = "open-policy-agent"; - version = "0.23.2"; + version = "0.24.0"; goPackagePath = "github.com/open-policy-agent/opa"; src = fetchFromGitHub { owner = "open-policy-agent"; repo = "opa"; rev = "v${version}"; - sha256 = "18hpanfrzg6xnq1g0yws6g0lw4y191pnrqphccv13j6kqk3k10ps"; + sha256 = "0fv2rq8a01hapcpgfqp71v113iyyzs5w1sam14h9clyr1vqrbcf2"; }; + subPackages = [ "." ]; + buildFlagsArray = '' -ldflags= -X ${goPackagePath}/version.Version=${version} diff --git a/pkgs/development/tools/operator-sdk/default.nix b/pkgs/development/tools/operator-sdk/default.nix index 79baecd74f5..c803207f88a 100644 --- a/pkgs/development/tools/operator-sdk/default.nix +++ b/pkgs/development/tools/operator-sdk/default.nix @@ -26,7 +26,7 @@ buildGoModule rec { ''; meta = with lib; { - description = "SDK for building Kubernetes applications. Provides high level APIs, useful abstractions, and project scaffolding."; + description = "SDK for building Kubernetes applications. Provides high level APIs, useful abstractions, and project scaffolding"; homepage = "https://github.com/operator-framework/operator-sdk"; license = licenses.asl20; maintainers = with maintainers; [ arnarg ]; diff --git a/pkgs/development/tools/parinfer-rust/default.nix b/pkgs/development/tools/parinfer-rust/default.nix index f1627c7ed39..f697e00b56a 100644 --- a/pkgs/development/tools/parinfer-rust/default.nix +++ b/pkgs/development/tools/parinfer-rust/default.nix @@ -28,7 +28,7 @@ rustPlatform.buildRustPackage rec { ''; meta = with stdenv.lib; { - description = "Infer parentheses for Clojure, Lisp, and Scheme."; + description = "Infer parentheses for Clojure, Lisp, and Scheme"; homepage = "https://github.com/eraserhd/parinfer-rust"; license = licenses.isc; maintainers = with maintainers; [ eraserhd ]; diff --git a/pkgs/development/tools/parsing/bison/default.nix b/pkgs/development/tools/parsing/bison/default.nix index ca422f931da..70fd733e1ee 100644 --- a/pkgs/development/tools/parsing/bison/default.nix +++ b/pkgs/development/tools/parsing/bison/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { pname = "bison"; - version = "3.7.1"; + version = "3.7.2"; src = fetchurl { url = "mirror://gnu/${pname}/${pname}-${version}.tar.gz"; - sha256 = "04vx6sah3bnr3a5n9knw306sb3y41pjfl7k9ihbsimghkj1m5n8x"; + sha256 = "111ax2imnydvrpcys5ami8ixn0a50m7a5pims7cbyysi8h8djp21"; }; nativeBuildInputs = [ m4 perl ] ++ stdenv.lib.optional stdenv.isSunOS help2man; diff --git a/pkgs/development/tools/parsing/tree-sitter/default.nix b/pkgs/development/tools/parsing/tree-sitter/default.nix index 7f48a6ad97d..63082f60ac2 100644 --- a/pkgs/development/tools/parsing/tree-sitter/default.nix +++ b/pkgs/development/tools/parsing/tree-sitter/default.nix @@ -11,9 +11,9 @@ let # 1) change all these hashes # 2) nix-build -A tree-sitter.updater.update-all-grammars # 3) run the ./result script that is output by that (it updates ./grammars) - version = "0.16.9"; - sha256 = "sha256-e5Ft+jEpExLgBBFmiswW0VFrsKume4gmUiOiF4ODhhQ="; - cargoSha256 = "sha256-XbPLQEvf4JX517ddpx18eweiPrztS5E/X2pejkqmlCU="; + version = "0.17.1"; + sha256 = "sha256-k61actAEyao/Ea8aw9PCm252U+1I0d43MAYC68/lui4="; + cargoSha256 = "sha256-Jp/Fl20ZZfaIdWinOOujNVH5JjJNtyUYHfyTrmeeoRg="; src = fetchFromGitHub { owner = "tree-sitter"; diff --git a/pkgs/development/tools/parsing/tree-sitter/grammars/default.nix b/pkgs/development/tools/parsing/tree-sitter/grammars/default.nix index 5898997dd6e..083dc61a96f 100644 --- a/pkgs/development/tools/parsing/tree-sitter/grammars/default.nix +++ b/pkgs/development/tools/parsing/tree-sitter/grammars/default.nix @@ -8,6 +8,7 @@ javascript = (builtins.fromJSON (builtins.readFile ./tree-sitter-javascript.json)); jsdoc = (builtins.fromJSON (builtins.readFile ./tree-sitter-jsdoc.json)); json = (builtins.fromJSON (builtins.readFile ./tree-sitter-json.json)); + lua = (builtins.fromJSON (builtins.readFile ./tree-sitter-lua.json)); php = (builtins.fromJSON (builtins.readFile ./tree-sitter-php.json)); python = (builtins.fromJSON (builtins.readFile ./tree-sitter-python.json)); ruby = (builtins.fromJSON (builtins.readFile ./tree-sitter-ruby.json)); diff --git a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-lua.json b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-lua.json new file mode 100644 index 00000000000..267d25a52a0 --- /dev/null +++ b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-lua.json @@ -0,0 +1,10 @@ +{ + "url": "https://github.com/nvim-treesitter/tree-sitter-lua", + "rev": "278b0ea1f1f3d86afc86faaca0cbbf6c01182a54", + "date": "2020-09-08T18:29:23+02:00", + "path": "/nix/store/xkaqsw030bf6zd6pivrzrg3d50j1ka1k-tree-sitter-lua", + "sha256": "0i8jdp0bbl02h58hfhpild4v3rvy8yk5r5l90navvfxw4ad4f6f3", + "fetchSubmodules": false, + "deepClone": false, + "leaveDotGit": false +} diff --git a/pkgs/development/tools/pax-rs/default.nix b/pkgs/development/tools/pax-rs/default.nix index 72516fb7d17..6aa38104bca 100644 --- a/pkgs/development/tools/pax-rs/default.nix +++ b/pkgs/development/tools/pax-rs/default.nix @@ -6,7 +6,7 @@ buildRustPackage rec { version = "0.4.0"; meta = with stdenv.lib; { - description = "The fastest JavaScript bundler in the galaxy."; + description = "The fastest JavaScript bundler in the galaxy"; longDescription = '' The fastest JavaScript bundler in the galaxy. Fully supports ECMAScript module syntax (import/export) in addition to CommonJS require(). ''; diff --git a/pkgs/development/tools/pgloader/default.nix b/pkgs/development/tools/pgloader/default.nix index 94ba95b2d92..6d4bcaadd11 100644 --- a/pkgs/development/tools/pgloader/default.nix +++ b/pkgs/development/tools/pgloader/default.nix @@ -30,7 +30,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://pgloader.io/"; - description = "pgloader loads data into PostgreSQL and allows you to implement Continuous Migration from your current database to PostgreSQL"; + description = "Loads data into PostgreSQL and allows you to implement Continuous Migration from your current database to PostgreSQL"; maintainers = with maintainers; [ mguentner ]; license = licenses.postgresql; platforms = platforms.all; diff --git a/pkgs/development/tools/purescript/spago/spago.nix b/pkgs/development/tools/purescript/spago/spago.nix index b36bc26433d..4a5ad361e9f 100644 --- a/pkgs/development/tools/purescript/spago/spago.nix +++ b/pkgs/development/tools/purescript/spago/spago.nix @@ -2,20 +2,20 @@ , base, bower-json, bytestring, Cabal, containers, dhall, directory , either, exceptions, extra, fetchgit, file-embed, filepath, foldl , fsnotify, github, Glob, hpack, hspec, hspec-discover -, hspec-megaparsec, http-client, http-conduit, lens-family-core -, megaparsec, mtl, network-uri, open-browser, optparse-applicative -, prettyprinter, process, QuickCheck, retry, rio, rio-orphans, safe -, semver-range, stdenv, stm, tar, template-haskell, temporary, text -, time, transformers, turtle, unliftio, unordered-containers -, vector, versions, with-utf8, zlib +, hspec-megaparsec, http-client, http-conduit, http-types +, lens-family-core, megaparsec, mtl, network-uri, open-browser +, optparse-applicative, prettyprinter, process, QuickCheck, retry +, rio, rio-orphans, safe, semver-range, stdenv, stm, tar +, template-haskell, temporary, text, time, transformers, turtle +, unliftio, unordered-containers, vector, versions, with-utf8, zlib }: mkDerivation { pname = "spago"; - version = "0.16.0"; + version = "0.17.0"; src = fetchgit { url = "https://github.com/purescript/spago.git"; - sha256 = "0z4s0z14n1v9wajs7mj2b295rrrw24gdca79drzlv6x1y6dj7sxh"; - rev = "71b093cdf5e48ded645303281ab4a3ea5b730f5d"; + sha256 = "1w9y1gvk307f92gixs5g02zbg0xwhrshwmc5j97pxhbzzg9qjidy"; + rev = "3309afdef25e3e77f991a079eed78ff2f750e463"; fetchSubmodules = true; }; isLibrary = true; @@ -24,7 +24,7 @@ mkDerivation { aeson aeson-pretty ansi-terminal async-pool base bower-json bytestring Cabal containers dhall directory either exceptions file-embed filepath foldl fsnotify github Glob http-client - http-conduit lens-family-core megaparsec mtl network-uri + http-conduit http-types lens-family-core megaparsec mtl network-uri open-browser optparse-applicative prettyprinter process retry rio rio-orphans safe semver-range stm tar template-haskell temporary text time transformers turtle unliftio unordered-containers vector diff --git a/pkgs/development/tools/rdbtools/default.nix b/pkgs/development/tools/rdbtools/default.nix index 050c4ff04a2..624434101d9 100644 --- a/pkgs/development/tools/rdbtools/default.nix +++ b/pkgs/development/tools/rdbtools/default.nix @@ -4,11 +4,11 @@ with python.pkgs; buildPythonApplication rec { pname = "rdbtools"; - version = "0.1.14"; + version = "0.1.15"; src = fetchPypi { inherit pname version; - sha256 = "03vdwwkqz8py6c3wfgx402rn8pjjfn44w3gbxzr60lbkx27m63yj"; + sha256 = "689e57e42f43bdc73ea4e893d9676819980d17968696826b69fbd951f59772de"; }; propagatedBuildInputs = [ redis python-lzf ]; diff --git a/pkgs/development/tools/reftools/default.nix b/pkgs/development/tools/reftools/default.nix index 440d2f96133..a31108f3381 100644 --- a/pkgs/development/tools/reftools/default.nix +++ b/pkgs/development/tools/reftools/default.nix @@ -23,7 +23,7 @@ buildGoModule rec { }; meta = with lib; { - description = "reftools - refactoring tools for Go"; + description = "Refactoring tools for Go"; homepage = "https://github.com/davidrjenni/reftools"; license = licenses.bsd2; maintainers = with maintainers; [ kalbasit ]; diff --git a/pkgs/development/tools/rep/default.nix b/pkgs/development/tools/rep/default.nix new file mode 100644 index 00000000000..d24056f1d02 --- /dev/null +++ b/pkgs/development/tools/rep/default.nix @@ -0,0 +1,30 @@ +{ stdenv, fetchFromGitHub, asciidoc-full }: + +stdenv.mkDerivation rec { + pname = "rep"; + version = "0.2.1"; + + src = fetchFromGitHub { + owner = "eraserhd"; + repo = pname; + rev = "v${version}"; + sha256 = "1p0dbaj7f4irzzw1m44x3b3j3jjij9i4rs83wkrpiamlq61077di"; + }; + + nativeBuildInputs = [ + asciidoc-full + ]; + + postPatch = '' + substituteInPlace rc/rep.kak --replace '$(rep' '$('"$out/bin/rep" + ''; + makeFlags = [ "prefix=$(out)" ]; + + meta = with stdenv.lib; { + description = "Single-shot nREPL client"; + homepage = "https://github.com/eraserhd/rep"; + license = licenses.epl10; + platforms = platforms.all; + maintainers = [ maintainers.eraserhd ]; + }; +} diff --git a/pkgs/development/tools/richgo/default.nix b/pkgs/development/tools/richgo/default.nix index e6478086f79..441c0d8bdf1 100644 --- a/pkgs/development/tools/richgo/default.nix +++ b/pkgs/development/tools/richgo/default.nix @@ -18,7 +18,7 @@ buildGoModule rec { subPackages = [ "." ]; meta = with stdenv.lib; { - description = "Enrich `go test` outputs with text decorations."; + description = "Enrich `go test` outputs with text decorations"; homepage = "https://github.com/kyoh86/richgo"; license = licenses.mit; maintainers = with maintainers; [ rvolosatovs ]; diff --git a/pkgs/development/tools/rust/bindgen/default.nix b/pkgs/development/tools/rust/bindgen/default.nix index cc1bf1c7476..01e29036dbc 100644 --- a/pkgs/development/tools/rust/bindgen/default.nix +++ b/pkgs/development/tools/rust/bindgen/default.nix @@ -3,7 +3,7 @@ rustPlatform.buildRustPackage rec { pname = "rust-bindgen"; - version = "0.54.1"; + version = "0.55.1"; RUSTFLAGS = "--cap-lints warn"; # probably OK to remove after update @@ -11,10 +11,10 @@ rustPlatform.buildRustPackage rec { owner = "rust-lang"; repo = pname; rev = "v${version}"; - sha256 = "116np72w6agsi94xa1bdn6h7sa9gd522h358zlixk9xrhrx7yfn3"; + sha256 = "0cbc78zrhda4adza88g05sy04chixqay2ylgdjgmf13h607hp3kn"; }; - cargoSha256 = "12a7bd2579jcnkss073v5w5w68fxwvhq6c6ndjy8vp78wg83qich"; + cargoSha256 = "1dv1ywdy701bnc2jv5jq0hnpal1snlizaj9w6k1wxyrp9szjd48w"; libclang = llvmPackages.libclang.lib; #for substituteAll @@ -51,7 +51,7 @@ rustPlatform.buildRustPackage rec { ''; meta = with stdenv.lib; { - description = "Automatically generates Rust FFI bindings to C (and some C++) libraries."; + description = "Automatically generates Rust FFI bindings to C (and some C++) libraries"; longDescription = '' Bindgen takes a c or c++ header file and turns them into rust ffi declarations. diff --git a/pkgs/development/tools/rust/cargo-bloat/default.nix b/pkgs/development/tools/rust/cargo-bloat/default.nix index 8374e065356..51d19f5ad6f 100644 --- a/pkgs/development/tools/rust/cargo-bloat/default.nix +++ b/pkgs/development/tools/rust/cargo-bloat/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-bloat"; - version = "0.9.3"; + version = "0.10.0"; src = fetchFromGitHub { owner = "RazrFalcon"; repo = pname; rev = "v${version}"; - sha256 = "04h9yyna47cgn2d232v2fpbgki9gg4lykpmx46ncpsq4g6azl1a9"; + sha256 = "0bqzzh8vfqm7dpnb0fv4calnhsg9p3c5j06ycvg621p4zp4fydh2"; }; - cargoSha256 = "0lzc2nwz9lpwxv704k40d1416qnf3wy3g6ad8w8xbkfc6ydcaa4l"; + cargoSha256 = "1323lcl8fa21pgx3jhwl4w9f8qz3jjxb5qdvib9jdzqxnnw320xs"; meta = with lib; { description = "A tool and Cargo subcommand that helps you find out what takes most of the space in your executable"; diff --git a/pkgs/development/tools/rust/cargo-c/default.nix b/pkgs/development/tools/rust/cargo-c/default.nix index ce01fc1f00c..41c03923ec0 100644 --- a/pkgs/development/tools/rust/cargo-c/default.nix +++ b/pkgs/development/tools/rust/cargo-c/default.nix @@ -5,7 +5,7 @@ rustPlatform.buildRustPackage rec { pname = "cargo-c"; - version = "0.6.13"; + version = "0.6.15"; src = stdenv.mkDerivation rec { name = "${pname}-source-${version}"; @@ -14,11 +14,11 @@ rustPlatform.buildRustPackage rec { owner = "lu-zero"; repo = pname; rev = "v${version}"; - sha256 = "0ks2w3gclahidv6r6i0d0d6sli7r8wabxzgmhq03czy5w7kr0x56"; + sha256 = "04hrk3vy8294vxcsggdpcs8hg3ykzj2564ifsqc4zwz4b4wd1p8l"; }; cargoLock = fetchurl { url = "https://github.com/lu-zero/${pname}/releases/download/v${version}/Cargo.lock"; - sha256 = "0czy5q8hkjqyn53p7cjxnxfgwygx2a6casjb4nj5gxss2x3haih6"; + sha256 = "0rqb6ssqsdlm8zbshbxkwxlyy7j7p2gyficavzz33cw9g6fpmzbd"; }; installPhase = '' @@ -28,7 +28,7 @@ rustPlatform.buildRustPackage rec { ''; }; - cargoSha256 = "0jjkcawcz6wacx22zir9ay1qsi5ffk7c4gwa6jpky4a94zr1h690"; + cargoSha256 = "1q2s28nqd6l9qmhmdksdjjlypxry5ff18i2pgwmgiilcry51mj4b"; nativeBuildInputs = [ pkg-config ]; buildInputs = [ openssl ] diff --git a/pkgs/development/tools/rust/cargo-crev/default.nix b/pkgs/development/tools/rust/cargo-crev/default.nix index 750b651651c..6c85a523803 100644 --- a/pkgs/development/tools/rust/cargo-crev/default.nix +++ b/pkgs/development/tools/rust/cargo-crev/default.nix @@ -11,16 +11,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-crev"; - version = "0.17.0"; + version = "0.18.0"; src = fetchFromGitHub { owner = "crev-dev"; repo = "cargo-crev"; rev = "v${version}"; - sha256 = "1s5wb5m0d77qi90pyxld98ap37xnxrz3sz5gazq0pp5i9c9xa124"; + sha256 = "1ccwa44hpmpd57ff6w02rvrs63wxwmgls2i1rn285rxypmbysrp0"; }; - cargoSha256 = "10dzvzjqib751h2p1pl0z3dy2d17xwrcp9vyfrfr185yximcw2wx"; + cargoSha256 = "1sffivpgrn4my57pcrg46b2yg6fmhxj61d2sqvg60fjljrg595zn"; nativeBuildInputs = [ perl pkg-config ]; diff --git a/pkgs/development/tools/rust/cargo-embed/default.nix b/pkgs/development/tools/rust/cargo-embed/default.nix index dafcd1ded2f..a9c18b021bf 100644 --- a/pkgs/development/tools/rust/cargo-embed/default.nix +++ b/pkgs/development/tools/rust/cargo-embed/default.nix @@ -19,7 +19,7 @@ rustPlatform.buildRustPackage rec { buildInputs = [ libusb1 ]; meta = with lib; { - description = "A cargo extension for working with microcontrollers."; + description = "A cargo extension for working with microcontrollers"; homepage = "http://probe.rs/"; license = with licenses; [ asl20 /* or */ mit ]; maintainers = with maintainers; [ fooker ]; diff --git a/pkgs/development/tools/rust/cargo-flash/default.nix b/pkgs/development/tools/rust/cargo-flash/default.nix index d4844de21a0..e5d23c9258c 100644 --- a/pkgs/development/tools/rust/cargo-flash/default.nix +++ b/pkgs/development/tools/rust/cargo-flash/default.nix @@ -19,7 +19,7 @@ rustPlatform.buildRustPackage rec { buildInputs = [ libusb1 ]; meta = with lib; { - description = "A cargo extension for working with microcontrollers."; + description = "A cargo extension for working with microcontrollers"; homepage = "http://probe.rs/"; license = with licenses; [ asl20 /* or */ mit ]; maintainers = with maintainers; [ fooker ]; diff --git a/pkgs/development/tools/rust/cargo-geiger/default.nix b/pkgs/development/tools/rust/cargo-geiger/default.nix index d30c3ad6292..1e79a720a52 100644 --- a/pkgs/development/tools/rust/cargo-geiger/default.nix +++ b/pkgs/development/tools/rust/cargo-geiger/default.nix @@ -46,7 +46,7 @@ rustPlatform.buildRustPackage rec { ''; meta = with lib; { - description = "Detects usage of unsafe Rust in a Rust crate and its dependencies."; + description = "Detects usage of unsafe Rust in a Rust crate and its dependencies"; homepage = "https://github.com/rust-secure-code/cargo-geiger"; license = with licenses; [ asl20 /* or */ mit ]; maintainers = with maintainers; [ evanjs ]; diff --git a/pkgs/development/tools/rust/cargo-make/default.nix b/pkgs/development/tools/rust/cargo-make/default.nix index a1e9f7971f4..4d1c851198f 100644 --- a/pkgs/development/tools/rust/cargo-make/default.nix +++ b/pkgs/development/tools/rust/cargo-make/default.nix @@ -4,11 +4,11 @@ rustPlatform.buildRustPackage rec { pname = "cargo-make"; - version = "0.32.4"; + version = "0.32.7"; src = fetchCrate { inherit pname version; - sha256 = "04x363wz82f0sr4128f1nk1wxnnszxsmaxjs92mbvmpbvry82ivq"; + sha256 = "0x8alv0jdk7xl63b2m4696w2hwqnbwxfqz6f3gisljll42xp6n2z"; }; nativeBuildInputs = [ pkg-config ]; @@ -16,7 +16,7 @@ rustPlatform.buildRustPackage rec { buildInputs = [ openssl ] ++ stdenv.lib.optionals stdenv.isDarwin [ Security SystemConfiguration ]; - cargoSha256 = "1fgcxgm800sr0y6ab7c42l335b6c00cx0f2r5rgayi645a47a1zf"; + cargoSha256 = "1y2izxlc1nz3kqzrnhh9ir8j1gwvpj4cma2iqd65s9cf7xpkr6cx"; # Some tests fail because they need network access. # However, Travis ensures a proper build. diff --git a/pkgs/development/tools/rust/cargo-udeps/default.nix b/pkgs/development/tools/rust/cargo-udeps/default.nix index b7879adcc31..cc3aa00b27d 100644 --- a/pkgs/development/tools/rust/cargo-udeps/default.nix +++ b/pkgs/development/tools/rust/cargo-udeps/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-udeps"; - version = "0.1.14"; + version = "0.1.15"; src = fetchFromGitHub { owner = "est31"; repo = pname; rev = "v${version}"; - sha256 = "0imvq63i3s9qmm0x8cbaknjap2yfmpzva3y0sxmgkcm8ajkvp114"; + sha256 = "0qnmz7sxbwnjdsl17h876szxd04z0q9arbl1ib45b6346x7mq8n4"; }; - cargoSha256 = "196w9rgz4pwqvkiy839kqz765ljqx1k129w4nvxgxv3rcmy4lbzm"; + cargoSha256 = "1jnbf0a3bggjf0wapr9xdj9hwfpgki2csg7rhg5maqavm8m0mirm"; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/development/tools/rust/cbindgen/default.nix b/pkgs/development/tools/rust/cbindgen/default.nix index 62b9a616644..dc04f4cb112 100644 --- a/pkgs/development/tools/rust/cbindgen/default.nix +++ b/pkgs/development/tools/rust/cbindgen/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "rust-cbindgen"; - version = "0.14.4"; + version = "0.15.0"; src = fetchFromGitHub { owner = "eqrion"; repo = "cbindgen"; rev = "v${version}"; - sha256 = "06bis9kk3r0gishzmsq5wk3vv8r78ggk4m800562q2yhnhc37lfd"; + sha256 = "19bwllrajks286wl4zc5axgh4m9qqxdnc5024c30hyk0xnjffd0c"; }; - cargoSha256 = "0x8lxlik4n8rmlydcp0vqyiqwqm98cgwvw3h5hm2zviv8v0y8jnr"; + cargoSha256 = "1lzzckzcgj496chbfd6lhwxcangv0krx8m5k2jwffnb9mfgac7hx"; buildInputs = stdenv.lib.optional stdenv.isDarwin Security; diff --git a/pkgs/development/tools/rust/rust-analyzer/default.nix b/pkgs/development/tools/rust/rust-analyzer/default.nix index 22152b52ff8..2e6db32966d 100644 --- a/pkgs/development/tools/rust/rust-analyzer/default.nix +++ b/pkgs/development/tools/rust/rust-analyzer/default.nix @@ -2,10 +2,10 @@ { rust-analyzer-unwrapped = callPackage ./generic.nix rec { - rev = "2020-10-05"; + rev = "2020-10-19"; version = "unstable-${rev}"; - sha256 = "1vj5xwqif2ipzlb8ngpq3ymgqvv65d0700ihq7hx81k0i2m2awa6"; - cargoSha256 = "14n7nk64qq27a7ygqm0bly2bby3bmsav6nvsap3bkbkppyr5gyrg"; + sha256 = "1xvyk1d26zn1d9i42h78qsm6bg57nhn1rgr46jwa46gsb31nabjh"; + cargoSha256 = "18s5yrc9fdj2ndylwyf07l0kmwxka7mnbj254xmq3g7ragw71xjw"; }; rust-analyzer = callPackage ./wrapper.nix {} { diff --git a/pkgs/development/tools/rust/rust-analyzer/downgrade-smol_str.patch b/pkgs/development/tools/rust/rust-analyzer/downgrade-smol_str.patch deleted file mode 100644 index c3ceb096333..00000000000 --- a/pkgs/development/tools/rust/rust-analyzer/downgrade-smol_str.patch +++ /dev/null @@ -1,82 +0,0 @@ -This patch revert 875ad9b5c410200f5072515ae91b4ff51cff0448 (Bump smol_str from 0.1.16 to 0.1.17 ). - -diff --git a/Cargo.lock b/Cargo.lock -index 477af57aa..8b9055879 100644 ---- a/Cargo.lock -+++ b/Cargo.lock -@@ -1470,9 +1470,9 @@ checksum = "fbee7696b84bbf3d89a1c2eccff0850e3047ed46bfcd2e92c29a2d074d57e252" - - [[package]] - name = "smol_str" --version = "0.1.17" -+version = "0.1.16" - source = "registry+https://github.com/rust-lang/crates.io-index" --checksum = "6ca0f7ce3a29234210f0f4f0b56f8be2e722488b95cb522077943212da3b32eb" -+checksum = "2f7909a1d8bc166a862124d84fdc11bda0ea4ed3157ccca662296919c2972db1" - dependencies = [ - "serde", - ] -diff --git a/crates/hir_expand/src/name.rs b/crates/hir_expand/src/name.rs -index a5750d829..49841c7a1 100644 ---- a/crates/hir_expand/src/name.rs -+++ b/crates/hir_expand/src/name.rs -@@ -43,8 +43,8 @@ impl Name { - } - - /// Shortcut to create inline plain text name -- const fn new_inline(text: &str) -> Name { -- Name::new_text(SmolStr::new_inline(text)) -+ const fn new_inline_ascii(text: &[u8]) -> Name { -+ Name::new_text(SmolStr::new_inline_from_ascii(text.len(), text)) - } - - /// Resolve a name from the text of token. -@@ -127,7 +127,7 @@ pub mod known { - $( - #[allow(bad_style)] - pub const $ident: super::Name = -- super::Name::new_inline(stringify!($ident)); -+ super::Name::new_inline_ascii(stringify!($ident).as_bytes()); - )* - }; - } -@@ -210,8 +210,8 @@ pub mod known { - ); - - // self/Self cannot be used as an identifier -- pub const SELF_PARAM: super::Name = super::Name::new_inline("self"); -- pub const SELF_TYPE: super::Name = super::Name::new_inline("Self"); -+ pub const SELF_PARAM: super::Name = super::Name::new_inline_ascii(b"self"); -+ pub const SELF_TYPE: super::Name = super::Name::new_inline_ascii(b"Self"); - - #[macro_export] - macro_rules! name { -diff --git a/crates/hir_ty/src/infer.rs b/crates/hir_ty/src/infer.rs -index 9a7785c76..2b53b8297 100644 ---- a/crates/hir_ty/src/infer.rs -+++ b/crates/hir_ty/src/infer.rs -@@ -555,7 +555,7 @@ impl<'a> InferenceContext<'a> { - - fn resolve_lang_item(&self, name: &str) -> Option { - let krate = self.resolver.krate()?; -- let name = SmolStr::new_inline(name); -+ let name = SmolStr::new_inline_from_ascii(name.len(), name.as_bytes()); - self.db.lang_item(krate, name) - } - -diff --git a/crates/mbe/src/syntax_bridge.rs b/crates/mbe/src/syntax_bridge.rs -index d987b2500..a8ad917fb 100644 ---- a/crates/mbe/src/syntax_bridge.rs -+++ b/crates/mbe/src/syntax_bridge.rs -@@ -636,10 +636,7 @@ impl<'a> TreeSink for TtTreeSink<'a> { - let (text, id) = match leaf { - tt::Leaf::Ident(ident) => (ident.text.clone(), ident.id), - tt::Leaf::Punct(punct) => { -- assert!(punct.char.is_ascii()); -- let char = &(punct.char as u8); -- let text = std::str::from_utf8(std::slice::from_ref(char)).unwrap(); -- (SmolStr::new_inline(text), punct.id) -+ (SmolStr::new_inline_from_ascii(1, &[punct.char as u8]), punct.id) - } - tt::Leaf::Literal(lit) => (lit.text.clone(), lit.id), - }; diff --git a/pkgs/development/tools/rust/rust-analyzer/generic.nix b/pkgs/development/tools/rust/rust-analyzer/generic.nix index 20fb38b66b7..ca72f91953c 100644 --- a/pkgs/development/tools/rust/rust-analyzer/generic.nix +++ b/pkgs/development/tools/rust/rust-analyzer/generic.nix @@ -16,15 +16,9 @@ rustPlatform.buildRustPackage { inherit rev sha256; }; - # FIXME: Temporary fix for our rust 1.45.0 since rust-analyzer requires 1.46.0 - cargoPatches = [ - ./downgrade-smol_str.patch - ]; - + # FIXME: Temporary fixes for our rust 1.46.0 patches = [ - # FIXME: Temporary fix for our rust 1.45.0 since rust-analyzer requires 1.46.0 - ./no-loop-in-const-fn.patch - ./no-option-zip.patch + ./no-track_env_var.patch # Requires rustc 1.47.0 ]; buildAndTestSubdir = "crates/rust-analyzer"; diff --git a/pkgs/development/tools/rust/rust-analyzer/no-loop-in-const-fn.patch b/pkgs/development/tools/rust/rust-analyzer/no-loop-in-const-fn.patch deleted file mode 100644 index e750b3c4e12..00000000000 --- a/pkgs/development/tools/rust/rust-analyzer/no-loop-in-const-fn.patch +++ /dev/null @@ -1,223 +0,0 @@ -This patch revert 4b989009e3839cfc6f021d1552a46561cee6cde2 (CONST LOOPS ARE HERE). - -diff --git a/crates/parser/src/grammar/expressions.rs b/crates/parser/src/grammar/expressions.rs -index 5f885edfd..e72929f8c 100644 ---- a/crates/parser/src/grammar/expressions.rs -+++ b/crates/parser/src/grammar/expressions.rs -@@ -316,7 +316,7 @@ fn expr_bp(p: &mut Parser, mut r: Restrictions, bp: u8) -> (Option Option<(CompletedMarker, BlockLike)> { - let m; -diff --git a/crates/parser/src/grammar/expressions/atom.rs b/crates/parser/src/grammar/expressions/atom.rs -index 66a92a4e1..ba6dd2fbc 100644 ---- a/crates/parser/src/grammar/expressions/atom.rs -+++ b/crates/parser/src/grammar/expressions/atom.rs -@@ -15,7 +15,7 @@ use super::*; - // let _ = b"e"; - // let _ = br"f"; - // } --pub(crate) const LITERAL_FIRST: TokenSet = TokenSet::new(&[ -+pub(crate) const LITERAL_FIRST: TokenSet = token_set![ - TRUE_KW, - FALSE_KW, - INT_NUMBER, -@@ -25,8 +25,8 @@ pub(crate) const LITERAL_FIRST: TokenSet = TokenSet::new(&[ - STRING, - RAW_STRING, - BYTE_STRING, -- RAW_BYTE_STRING, --]); -+ RAW_BYTE_STRING -+]; - - pub(crate) fn literal(p: &mut Parser) -> Option { - if !p.at_ts(LITERAL_FIRST) { -@@ -39,7 +39,7 @@ pub(crate) fn literal(p: &mut Parser) -> Option { - - // E.g. for after the break in `if break {}`, this should not match - pub(super) const ATOM_EXPR_FIRST: TokenSet = -- LITERAL_FIRST.union(paths::PATH_FIRST).union(TokenSet::new(&[ -+ LITERAL_FIRST.union(paths::PATH_FIRST).union(token_set![ - T!['('], - T!['{'], - T!['['], -@@ -59,9 +59,9 @@ pub(super) const ATOM_EXPR_FIRST: TokenSet = - T![loop], - T![for], - LIFETIME, -- ])); -+ ]); - --const EXPR_RECOVERY_SET: TokenSet = TokenSet::new(&[LET_KW, R_DOLLAR]); -+const EXPR_RECOVERY_SET: TokenSet = token_set![LET_KW, R_DOLLAR]; - - pub(super) fn atom_expr(p: &mut Parser, r: Restrictions) -> Option<(CompletedMarker, BlockLike)> { - if let Some(m) = literal(p) { -diff --git a/crates/parser/src/grammar/items.rs b/crates/parser/src/grammar/items.rs -index 22810e6fb..8fd8f3b80 100644 ---- a/crates/parser/src/grammar/items.rs -+++ b/crates/parser/src/grammar/items.rs -@@ -26,7 +26,7 @@ pub(super) fn mod_contents(p: &mut Parser, stop_on_r_curly: bool) { - } - } - --pub(super) const ITEM_RECOVERY_SET: TokenSet = TokenSet::new(&[ -+pub(super) const ITEM_RECOVERY_SET: TokenSet = token_set![ - FN_KW, - STRUCT_KW, - ENUM_KW, -@@ -41,7 +41,7 @@ pub(super) const ITEM_RECOVERY_SET: TokenSet = TokenSet::new(&[ - USE_KW, - MACRO_KW, - T![;], --]); -+]; - - pub(super) fn item_or_macro(p: &mut Parser, stop_on_r_curly: bool) { - let m = p.start(); -diff --git a/crates/parser/src/grammar/paths.rs b/crates/parser/src/grammar/paths.rs -index 5d297e2d6..52562afa4 100644 ---- a/crates/parser/src/grammar/paths.rs -+++ b/crates/parser/src/grammar/paths.rs -@@ -3,7 +3,7 @@ - use super::*; - - pub(super) const PATH_FIRST: TokenSet = -- TokenSet::new(&[IDENT, T![self], T![super], T![crate], T![:], T![<]]); -+ token_set![IDENT, T![self], T![super], T![crate], T![:], T![<]]; - - pub(super) fn is_path_start(p: &Parser) -> bool { - is_use_path_start(p) || p.at(T![<]) -diff --git a/crates/parser/src/grammar/patterns.rs b/crates/parser/src/grammar/patterns.rs -index 796f206e1..07b1d6dd5 100644 ---- a/crates/parser/src/grammar/patterns.rs -+++ b/crates/parser/src/grammar/patterns.rs -@@ -2,18 +2,9 @@ - - use super::*; - --pub(super) const PATTERN_FIRST: TokenSet = -- expressions::LITERAL_FIRST.union(paths::PATH_FIRST).union(TokenSet::new(&[ -- T![box], -- T![ref], -- T![mut], -- T!['('], -- T!['['], -- T![&], -- T![_], -- T![-], -- T![.], -- ])); -+pub(super) const PATTERN_FIRST: TokenSet = expressions::LITERAL_FIRST -+ .union(paths::PATH_FIRST) -+ .union(token_set![T![box], T![ref], T![mut], T!['('], T!['['], T![&], T![_], T![-], T![.]]); - - pub(crate) fn pattern(p: &mut Parser) { - pattern_r(p, PAT_RECOVERY_SET); -@@ -83,7 +74,7 @@ fn pattern_single_r(p: &mut Parser, recovery_set: TokenSet) { - } - - const PAT_RECOVERY_SET: TokenSet = -- TokenSet::new(&[LET_KW, IF_KW, WHILE_KW, LOOP_KW, MATCH_KW, R_PAREN, COMMA]); -+ token_set![LET_KW, IF_KW, WHILE_KW, LOOP_KW, MATCH_KW, R_PAREN, COMMA]; - - fn atom_pat(p: &mut Parser, recovery_set: TokenSet) -> Option { - let m = match p.nth(0) { -diff --git a/crates/parser/src/grammar/types.rs b/crates/parser/src/grammar/types.rs -index 1ea130ac5..9d00eb9b9 100644 ---- a/crates/parser/src/grammar/types.rs -+++ b/crates/parser/src/grammar/types.rs -@@ -2,7 +2,7 @@ - - use super::*; - --pub(super) const TYPE_FIRST: TokenSet = paths::PATH_FIRST.union(TokenSet::new(&[ -+pub(super) const TYPE_FIRST: TokenSet = paths::PATH_FIRST.union(token_set![ - T!['('], - T!['['], - T![<], -@@ -16,16 +16,16 @@ pub(super) const TYPE_FIRST: TokenSet = paths::PATH_FIRST.union(TokenSet::new(&[ - T![for], - T![impl], - T![dyn], --])); -+]); - --const TYPE_RECOVERY_SET: TokenSet = TokenSet::new(&[ -+const TYPE_RECOVERY_SET: TokenSet = token_set![ - T![')'], - T![,], - L_DOLLAR, - // test_err struct_field_recover - // struct S { f pub g: () } - T![pub], --]); -+]; - - pub(crate) fn type_(p: &mut Parser) { - type_with_bounds_cond(p, true); -diff --git a/crates/parser/src/token_set.rs b/crates/parser/src/token_set.rs -index a68f0144e..994017acf 100644 ---- a/crates/parser/src/token_set.rs -+++ b/crates/parser/src/token_set.rs -@@ -9,21 +9,15 @@ pub(crate) struct TokenSet(u128); - impl TokenSet { - pub(crate) const EMPTY: TokenSet = TokenSet(0); - -- pub(crate) const fn new(kinds: &[SyntaxKind]) -> TokenSet { -- let mut res = 0u128; -- let mut i = 0; -- while i < kinds.len() { -- res |= mask(kinds[i]); -- i += 1 -- } -- TokenSet(res) -+ pub(crate) const fn singleton(kind: SyntaxKind) -> TokenSet { -+ TokenSet(mask(kind)) - } - - pub(crate) const fn union(self, other: TokenSet) -> TokenSet { - TokenSet(self.0 | other.0) - } - -- pub(crate) const fn contains(&self, kind: SyntaxKind) -> bool { -+ pub(crate) fn contains(&self, kind: SyntaxKind) -> bool { - self.0 & mask(kind) != 0 - } - } -@@ -32,10 +26,16 @@ const fn mask(kind: SyntaxKind) -> u128 { - 1u128 << (kind as usize) - } - -+#[macro_export] -+macro_rules! token_set { -+ ($($t:expr),*) => { TokenSet::EMPTY$(.union(TokenSet::singleton($t)))* }; -+ ($($t:expr),* ,) => { token_set!($($t),*) }; -+} -+ - #[test] - fn token_set_works_for_tokens() { - use crate::SyntaxKind::*; -- let ts = TokenSet::new(&[EOF, SHEBANG]); -+ let ts = token_set![EOF, SHEBANG]; - assert!(ts.contains(EOF)); - assert!(ts.contains(SHEBANG)); - assert!(!ts.contains(PLUS)); -diff --git a/xtask/src/install.rs b/xtask/src/install.rs -index d829790d7..b25a6e301 100644 ---- a/xtask/src/install.rs -+++ b/xtask/src/install.rs -@@ -7,7 +7,7 @@ use anyhow::{bail, format_err, Context, Result}; - use crate::not_bash::{pushd, run}; - - // Latest stable, feel free to send a PR if this lags behind. --const REQUIRED_RUST_VERSION: u32 = 46; -+const REQUIRED_RUST_VERSION: u32 = 43; - - pub struct InstallCmd { - pub client: Option, diff --git a/pkgs/development/tools/rust/rust-analyzer/no-option-zip.patch b/pkgs/development/tools/rust/rust-analyzer/no-option-zip.patch deleted file mode 100644 index 5b1089ba9b8..00000000000 --- a/pkgs/development/tools/rust/rust-analyzer/no-option-zip.patch +++ /dev/null @@ -1,52 +0,0 @@ -diff --git a/crates/assists/src/handlers/merge_imports.rs b/crates/assists/src/handlers/merge_imports.rs -index fe33cee53..2184a4154 100644 ---- a/crates/assists/src/handlers/merge_imports.rs -+++ b/crates/assists/src/handlers/merge_imports.rs -@@ -32,7 +32,7 @@ pub(crate) fn merge_imports(acc: &mut Assists, ctx: &AssistContext) -> Option<() - if let Some(use_item) = tree.syntax().parent().and_then(ast::Use::cast) { - let (merged, to_delete) = - next_prev().filter_map(|dir| neighbor(&use_item, dir)).find_map(|use_item2| { -- try_merge_imports(&use_item, &use_item2, MergeBehaviour::Full).zip(Some(use_item2)) -+ Some((try_merge_imports(&use_item, &use_item2, MergeBehaviour::Full)?, use_item2)) - })?; - - rewriter.replace_ast(&use_item, &merged); -@@ -44,7 +44,7 @@ pub(crate) fn merge_imports(acc: &mut Assists, ctx: &AssistContext) -> Option<() - } else { - let (merged, to_delete) = - next_prev().filter_map(|dir| neighbor(&tree, dir)).find_map(|use_tree| { -- try_merge_trees(&tree, &use_tree, MergeBehaviour::Full).zip(Some(use_tree)) -+ Some((try_merge_trees(&tree, &use_tree, MergeBehaviour::Full)?, use_tree)) - })?; - - rewriter.replace_ast(&tree, &merged); -diff --git a/crates/assists/src/utils/insert_use.rs b/crates/assists/src/utils/insert_use.rs -index f6025c99a..f9bd31cf3 100644 ---- a/crates/assists/src/utils/insert_use.rs -+++ b/crates/assists/src/utils/insert_use.rs -@@ -274,7 +274,7 @@ fn common_prefix(lhs: &ast::Path, rhs: &ast::Path) -> Option<(ast::Path, ast::Pa - } - res = Some((lhs_curr.clone(), rhs_curr.clone())); - -- match lhs_curr.parent_path().zip(rhs_curr.parent_path()) { -+ match zip(lhs_curr.parent_path(), rhs_curr.parent_path()) { - Some((lhs, rhs)) => { - lhs_curr = lhs; - rhs_curr = rhs; -@@ -452,7 +452,7 @@ fn find_insert_position( - let path_node_iter = scope - .as_syntax_node() - .children() -- .filter_map(|node| ast::Use::cast(node.clone()).zip(Some(node))) -+ .filter_map(|node| Some((ast::Use::cast(node.clone())?, node))) - .flat_map(|(use_, node)| { - let tree = use_.use_tree()?; - let path = tree.path()?; -@@ -989,3 +989,7 @@ use foo::bar::baz::Qux;", - assert_eq!(result.map(|u| u.to_string()), None); - } - } -+ -+fn zip(x: Option, y: Option) -> Option<(T, U)> { -+ Some((x?, y?)) -+} diff --git a/pkgs/development/tools/rust/rust-analyzer/no-track_env_var.patch b/pkgs/development/tools/rust/rust-analyzer/no-track_env_var.patch new file mode 100644 index 00000000000..f5173c4bacb --- /dev/null +++ b/pkgs/development/tools/rust/rust-analyzer/no-track_env_var.patch @@ -0,0 +1,120 @@ +This patch revert 3d169bd3f4cdc2dc3dd09eadbbc17c19214d69f3 (Add track_env_var to the proc macro server). + +diff --git a/crates/proc_macro_srv/src/proc_macro/bridge/client.rs b/crates/proc_macro_srv/src/proc_macro/bridge/client.rs +index 55d6330cc..cb4b3bdb0 100644 +--- a/crates/proc_macro_srv/src/proc_macro/bridge/client.rs ++++ b/crates/proc_macro_srv/src/proc_macro/bridge/client.rs +@@ -160,7 +160,6 @@ macro_rules! define_handles { + } + define_handles! { + 'owned: +- FreeFunctions, + TokenStream, + TokenStreamBuilder, + TokenStreamIter, +diff --git a/crates/proc_macro_srv/src/proc_macro/bridge/mod.rs b/crates/proc_macro_srv/src/proc_macro/bridge/mod.rs +index b97886eb9..aeb05aad4 100644 +--- a/crates/proc_macro_srv/src/proc_macro/bridge/mod.rs ++++ b/crates/proc_macro_srv/src/proc_macro/bridge/mod.rs +@@ -57,10 +57,6 @@ use std::thread; + macro_rules! with_api { + ($S:ident, $self:ident, $m:ident) => { + $m! { +- FreeFunctions { +- fn drop($self: $S::FreeFunctions); +- fn track_env_var(var: &str, value: Option<&str>); +- }, + TokenStream { + fn drop($self: $S::TokenStream); + fn clone($self: &$S::TokenStream) -> $S::TokenStream; +diff --git a/crates/proc_macro_srv/src/proc_macro/bridge/server.rs b/crates/proc_macro_srv/src/proc_macro/bridge/server.rs +index 3acb239af..45d41ac02 100644 +--- a/crates/proc_macro_srv/src/proc_macro/bridge/server.rs ++++ b/crates/proc_macro_srv/src/proc_macro/bridge/server.rs +@@ -11,8 +11,6 @@ use super::client::HandleStore; + /// Declare an associated item of one of the traits below, optionally + /// adjusting it (i.e., adding bounds to types and default bodies to methods). + macro_rules! associated_item { +- (type FreeFunctions) => +- (type FreeFunctions: 'static;); + (type TokenStream) => + (type TokenStream: 'static + Clone;); + (type TokenStreamBuilder) => +diff --git a/crates/proc_macro_srv/src/proc_macro/mod.rs b/crates/proc_macro_srv/src/proc_macro/mod.rs +index fc6e7344f..ee0dc9722 100644 +--- a/crates/proc_macro_srv/src/proc_macro/mod.rs ++++ b/crates/proc_macro_srv/src/proc_macro/mod.rs +@@ -924,25 +924,3 @@ impl fmt::Debug for Literal { + self.0.fmt(f) + } + } +- +-pub mod tracked_env { +- use std::env::{self, VarError}; +- use std::ffi::OsStr; +- +- /// Retrieve an environment variable and add it to build dependency info. +- /// Build system executing the compiler will know that the variable was accessed during +- /// compilation, and will be able to rerun the build when the value of that variable changes. +- /// Besides the dependency tracking this function should be equivalent to `env::var` from the +- /// standard library, except that the argument must be UTF-8. +- pub fn var + AsRef>(key: K) -> Result { +- use std::ops::Deref; +- +- let key: &str = key.as_ref(); +- let value = env::var(key); +- super::bridge::client::FreeFunctions::track_env_var( +- key, +- value.as_ref().map(|t| t.deref()).ok(), +- ); +- value +- } +-} +diff --git a/crates/proc_macro_srv/src/rustc_server.rs b/crates/proc_macro_srv/src/rustc_server.rs +index c5fe3591e..7d1695c86 100644 +--- a/crates/proc_macro_srv/src/rustc_server.rs ++++ b/crates/proc_macro_srv/src/rustc_server.rs +@@ -242,8 +242,6 @@ impl TokenStreamBuilder { + } + } + +-pub struct FreeFunctions; +- + #[derive(Clone)] + pub struct TokenStreamIter { + trees: IntoIter, +@@ -256,7 +254,6 @@ pub struct Rustc { + } + + impl server::Types for Rustc { +- type FreeFunctions = FreeFunctions; + type TokenStream = TokenStream; + type TokenStreamBuilder = TokenStreamBuilder; + type TokenStreamIter = TokenStreamIter; +@@ -270,13 +267,6 @@ impl server::Types for Rustc { + type MultiSpan = Vec; + } + +-impl server::FreeFunctions for Rustc { +- fn track_env_var(&mut self, _var: &str, _value: Option<&str>) { +- // FIXME: track env var accesses +- // https://github.com/rust-lang/rust/pull/71858 +- } +-} +- + impl server::TokenStream for Rustc { + fn new(&mut self) -> Self::TokenStream { + Self::TokenStream::new() +diff --git a/xtask/src/install.rs b/xtask/src/install.rs +index fcc4f05e4..d829790d7 100644 +--- a/xtask/src/install.rs ++++ b/xtask/src/install.rs +@@ -7,7 +7,7 @@ use anyhow::{bail, format_err, Context, Result}; + use crate::not_bash::{pushd, run}; + + // Latest stable, feel free to send a PR if this lags behind. +-const REQUIRED_RUST_VERSION: u32 = 47; ++const REQUIRED_RUST_VERSION: u32 = 46; + + pub struct InstallCmd { + pub client: Option, diff --git a/pkgs/development/tools/setupcfg2nix/default.nix b/pkgs/development/tools/setupcfg2nix/default.nix index 9762862cf61..4cc1ec320cc 100644 --- a/pkgs/development/tools/setupcfg2nix/default.nix +++ b/pkgs/development/tools/setupcfg2nix/default.nix @@ -10,7 +10,7 @@ buildSetupcfg rec { }; application = true; meta = { - description = "Generate nix expressions from setup.cfg for a python package."; + description = "Generate nix expressions from setup.cfg for a python package"; homepage = "https://github.com/target/setupcfg2nix"; license = lib.licenses.mit; platforms = lib.platforms.all; diff --git a/pkgs/development/tools/sourcetrail/default.nix b/pkgs/development/tools/sourcetrail/default.nix index 9e41f209cfd..e6b86e4a85c 100644 --- a/pkgs/development/tools/sourcetrail/default.nix +++ b/pkgs/development/tools/sourcetrail/default.nix @@ -1,77 +1,213 @@ -{ stdenv, fetchurl, autoPatchelfHook -, zlib, expat, dbus, openssl, python3 }: +{ stdenv, fetchFromGitHub, callPackage, writeScript, cmake, wrapQtAppsHook +, boost, qt5, llvmPackages, gcc, jdk, pythonPackages, desktop-file-utils +, shared-mime-info, imagemagick, which, coreutils, maven, fetchpatch }: +let + # TODO: remove when version incompatibility issue with python3Packages.jedi is + # resolved + parso = pythonPackages.callPackage ./parso.nix {}; + jedi = pythonPackages.callPackage ./jedi.nix { inherit parso; }; + + pythonIndexer = pythonPackages.callPackage ./python.nix { inherit jedi parso; }; + javaIndexer = callPackage ./java.nix {}; + + # Upstream script: + # https://github.com/CoatiSoftware/Sourcetrail/blob/master/script/update_java_indexer.sh + installJavaIndexer = writeScript "update_java_indexer.sh" '' + #!${stdenv.shell} + + cd "$(dirname "$0")/.." + dst="$out/opt/sourcetrail/share/data/java/lib" + + mkdir -p "$dst" + cp "${javaIndexer}/target/java-indexer-1.0.jar" "$dst/java-indexer.jar" + cp -r java_indexer/lib/*.jar "$dst" + ''; + + # Upstream script: + # https://github.com/CoatiSoftware/Sourcetrail/blob/master/script/download_python_indexer.sh + installPythonIndexer = writeScript "download_python_indexer.sh" '' + #!${stdenv.shell} + + mkdir -p $out/opt/sourcetrail/share/data + ln -s "${pythonIndexer}/bin" "$out/opt/sourcetrail/share/data/python" + ''; +in stdenv.mkDerivation rec { pname = "sourcetrail"; - version = "2019.3.46"; + version = "2020.2.43"; - src = fetchurl { - name = "sourtrail.tar.gz"; - url = "https://www.sourcetrail.com/downloads/${version}/linux/64bit"; - sha256 = "0dnkxr3fijcsbn6pd20lyxhr9ns6ji1c4dffly9s16yq4x9ad5r4"; + src = fetchFromGitHub { + owner = "CoatiSoftware"; + repo = "Sourcetrail"; + rev = "${version}"; + sha256 = "0jp9y86xzkcxikc1cn4f6gqgg6zdssck08677ldagw25p1zadvzw"; }; - nativeBuildInputs = [ autoPatchelfHook ]; - buildInputs = [ zlib expat dbus stdenv.cc.cc openssl python3 ]; + patches = let + url = commit: "https://github.com/CoatiSoftware/Sourcetrail/commit/${commit}.patch"; + in [ + ./disable-updates.patch + ./disable-failing-tests.patch # FIXME: 5 test cases failing due to sandbox + # TODO: remove on next release + (fetchpatch { + name = "fix-filecopy.patch"; + url = url "d079d1787c9e5cadcf41a003666dc0746cc1cda0"; + sha256 = "0mixy2a4s16kv2q89k7y4dv21wnv2zd86i4gdwn3xz977y8hf92b"; + }) + (fetchpatch { + name = "fix-broken-test.patch"; + url = url "85329174bac8a301733100dc4540258f977e2c5a"; + sha256 = "17l4417sbmkrgr6v3fbazlmkzl9774zrpjv2n9zwfrz52y30f7b9"; + }) + ]; - installPhase = '' - runHook preInstall + nativeBuildInputs = [ + cmake + jdk + wrapQtAppsHook + desktop-file-utils + imagemagick + javaIndexer # the resulting jar file is copied by our install script + ] ++ stdenv.lib.optionals doCheck testBinPath; + buildInputs = [ + boost pythonIndexer shared-mime-info + ] ++ (with qt5; [ qtbase qtsvg ]) + ++ (with llvmPackages; [ libclang llvm ]); + binPath = [ gcc jdk.jre maven which ]; + testBinPath = binPath ++ [ coreutils ]; - mkdir -p $out/bin $out/opt + cmakeFlags = [ + "-DBoost_USE_STATIC_LIBS=OFF" + "-DBUILD_CXX_LANGUAGE_PACKAGE=ON" + "-DCMAKE_PREFIX_PATH=${llvmPackages.clang-unwrapped}" + "-DBUILD_JAVA_LANGUAGE_PACKAGE=ON" + "-DBUILD_PYTHON_LANGUAGE_PACKAGE=ON" + ]; - mv -v setup/share $out - mv -v data/gui/icon/logo_1024_1024.png $out/share/icons/sourcetrail.png - mv -v data/gui/icon/project_256_256.png $out/share/icons/project-sourcetrail.png - - mkdir -p $out/share/sourcetrail/doc - mv -v README EULA.txt $out/share/sourcetrail/doc - mv -v plugin $out/share/sourcetrail - - cp -rv . $out/opt - - rm $out/opt/lib/libssl.so - rm $out/opt/lib/platforms/{libqeglfs.so,libqwebgl.so} - ln -s ${openssl}/lib/libssl.so $out/opt/lib/libssl.so - - substituteInPlace \ - $out/share/applications/sourcetrail.desktop \ - --replace /usr/bin/ $out/bin/ - - cat < $out/bin/sourcetrail - #! ${stdenv.shell} -e - - # XXX: Sourcetrail somehow copies the initial config files into the home - # directory without write permissions. We currently just copy them - # ourselves to work around this problem. - setup_config() { - local src dst - - [ ! -d ~/.config/sourcetrail ] && mkdir -p ~/.config/sourcetrail - for src in $out/opt/data/fallback/*; do - dst=~/.config/sourcetrail/"\$(basename "\$src")" - if [ ! -e "\$dst" ]; then - cp -r "\$src" "\$dst" - fi - done - - chmod -R u+w ~/.config/sourcetrail - } - - [ -d "\$HOME" ] && setup_config - export PATH="\$PATH:${python3}/bin" - exec "$out/opt/Sourcetrail.sh" "\$@" + postPatch = let + major = stdenv.lib.versions.major version; + minor = stdenv.lib.versions.minor version; + patch = stdenv.lib.versions.patch version; + in '' + # Upstream script obtains it's version from git: + # https://github.com/CoatiSoftware/Sourcetrail/blob/master/cmake/version.cmake + cat > cmake/version.cmake < mavenPaths = utility::getMavenExecutablePathDetector()->getPaths(); + + REQUIRE(!mavenPaths.empty()); +diff --git a/src/test/UtilityMavenTestSuite.cpp b/src/test/UtilityMavenTestSuite.cpp +index f48fe2b6..363ef64a 100644 +--- a/src/test/UtilityMavenTestSuite.cpp ++++ b/src/test/UtilityMavenTestSuite.cpp +@@ -17,6 +17,7 @@ TEST_CASE("maven path detector is working") + + TEST_CASE("maven wrapper detects source directories of simple projects") + { ++ return; + std::shared_ptr mavenPathDetector = utility::getMavenExecutablePathDetector(); + REQUIRE(!mavenPathDetector->getPaths().empty()); + +@@ -41,6 +42,7 @@ TEST_CASE("maven wrapper detects source directories of simple projects") + + TEST_CASE("maven wrapper detects source and test directories of simple projects") + { ++ return; + std::shared_ptr mavenPathDetector = utility::getMavenExecutablePathDetector(); + REQUIRE(!mavenPathDetector->getPaths().empty()); + +@@ -65,6 +67,7 @@ TEST_CASE("maven wrapper detects source and test directories of simple projects" + + TEST_CASE("maven wrapper detects source directories of nested modules") + { ++ return; + std::shared_ptr mavenPathDetector = utility::getMavenExecutablePathDetector(); + REQUIRE(!mavenPathDetector->getPaths().empty()); + +@@ -101,6 +104,7 @@ TEST_CASE("maven wrapper detects source directories of nested modules") + + TEST_CASE("maven wrapper detects source and test directories of nested modules") + { ++ return; + std::shared_ptr mavenPathDetector = utility::getMavenExecutablePathDetector(); + REQUIRE(!mavenPathDetector->getPaths().empty()); + diff --git a/pkgs/development/tools/sourcetrail/disable-updates.patch b/pkgs/development/tools/sourcetrail/disable-updates.patch new file mode 100644 index 00000000000..112af857c59 --- /dev/null +++ b/pkgs/development/tools/sourcetrail/disable-updates.patch @@ -0,0 +1,13 @@ +diff --git a/src/lib/settings/ApplicationSettings.cpp b/src/lib/settings/ApplicationSettings.cpp +index 1be13ccd..db6098e1 100644 +--- a/src/lib/settings/ApplicationSettings.cpp ++++ b/src/lib/settings/ApplicationSettings.cpp +@@ -593,7 +593,7 @@ void ApplicationSettings::setUserToken(std::string token) + + bool ApplicationSettings::getAutomaticUpdateCheck() const + { +- return getValue("user/update_check/automatic", true); ++ return false; + } + + void ApplicationSettings::setAutomaticUpdateCheck(bool automaticUpdates) diff --git a/pkgs/development/tools/sourcetrail/java.nix b/pkgs/development/tools/sourcetrail/java.nix new file mode 100644 index 00000000000..7056dca447f --- /dev/null +++ b/pkgs/development/tools/sourcetrail/java.nix @@ -0,0 +1,27 @@ +{ pkgs, javaPackages }: + +let + javaIndexer = javaPackages.mavenbuild { + name = "sourcetrail-java-indexer-${pkgs.sourcetrail.version}"; + src = pkgs.sourcetrail.src; + m2Path = "com/sourcetrail/java-indexer"; + + # This doesn't include all required dependencies. We still rely on binary + # copies of maven packages included in the source repo for building. + mavenDeps = with javaPackages; [ + mavenCompiler_3_2 + plexusCompilerApi_2_4 + plexusCompilerJavac_2_4 + plexusCompilerManager_2_4 + ]; + + meta = { + description = "Java indexer for Sourcetrail"; + }; + }; +in +javaIndexer.overrideAttrs (drv: { + postUnpack = '' + export sourceRoot=''${sourceRoot}/java_indexer + ''; +}) diff --git a/pkgs/development/tools/sourcetrail/jedi.nix b/pkgs/development/tools/sourcetrail/jedi.nix new file mode 100644 index 00000000000..14a40a6e6db --- /dev/null +++ b/pkgs/development/tools/sourcetrail/jedi.nix @@ -0,0 +1,36 @@ +# Taken from a past commit of nixpkgs + +{ stdenv, buildPythonPackage, fetchPypi, pytest, glibcLocales, tox, pytestcov, parso }: + +buildPythonPackage rec { + pname = "jedi"; + + # TODO: Remove this package when version incompatibility issue with + # python3Packages.jedi is resolved. + # + # Upstream requirements: + # https://github.com/CoatiSoftware/SourcetrailPythonIndexer#requirements + version = "0.17.2"; + + src = fetchPypi { + inherit pname version; + sha256 = "86ed7d9b750603e4ba582ea8edc678657fb4007894a12bcf6f4bb97892f31d20"; + }; + + checkInputs = [ pytest glibcLocales tox pytestcov ]; + + propagatedBuildInputs = [ parso ]; + + checkPhase = '' + LC_ALL="en_US.UTF-8" py.test test + ''; + + # tox required for tests: https://github.com/davidhalter/jedi/issues/808 + doCheck = false; + + meta = with stdenv.lib; { + homepage = "https://github.com/davidhalter/jedi"; + description = "An autocompletion tool for Python that can be used for text editors"; + license = licenses.lgpl3Plus; + }; +} diff --git a/pkgs/development/tools/sourcetrail/parso.nix b/pkgs/development/tools/sourcetrail/parso.nix new file mode 100644 index 00000000000..bd5d5b86ac5 --- /dev/null +++ b/pkgs/development/tools/sourcetrail/parso.nix @@ -0,0 +1,29 @@ +# Taken from a past commit of nixpkgs + +{ lib +, buildPythonPackage +, fetchPypi +, pytest +}: + +buildPythonPackage rec { + pname = "parso"; + + # TODO: Remove along with ./jedi.nix when version compatiblity issue is + # resolved. + version = "0.7.0"; + + src = fetchPypi { + inherit pname version; + sha256 = "908e9fae2144a076d72ae4e25539143d40b8e3eafbaeae03c1bfe226f4cdf12c"; + }; + + checkInputs = [ pytest ]; + + meta = { + description = "A Python Parser"; + homepage = "https://github.com/davidhalter/parso"; + license = lib.licenses.mit; + }; + +} diff --git a/pkgs/development/tools/sourcetrail/python.nix b/pkgs/development/tools/sourcetrail/python.nix new file mode 100644 index 00000000000..113abb77d61 --- /dev/null +++ b/pkgs/development/tools/sourcetrail/python.nix @@ -0,0 +1,68 @@ +{ stdenv, lib, fetchFromGitHub, wrapPython, python, jedi, parso, cmake, swig }: + +stdenv.mkDerivation rec { + pname = "SourcetrailPythonIndexer"; + version = "v1_db25_p5"; + + src = fetchFromGitHub { + owner = "CoatiSoftware"; + repo = pname; + rev = version; + sha256 = "05hlpd3am029pv1wi6mys3q0ggp64axmg8bdf1fabl9cl9jffscq"; + fetchSubmodules = true; + }; + + nativeBuildInputs = [ wrapPython cmake swig ]; + buildInputs = [ python ]; + pythonPath = [ jedi parso ]; + + dontUseCmakeConfigure = true; + cmakeFlags = [ + "-DBUILD_BINDINGS_PYTHON=1" + "-DPYTHON_VERSION=${lib.versions.majorMinor python.version}" + ]; + + buildPhase = '' + pushd SourcetrailDB + cmake -Bbuild $cmakeFlags . + pushd build + make -j $NIX_BUILD_CORES + popd + popd + ''; + + checkPhase = '' + buildPythonPath "$pythonPath" + + # FIXME: some tests are failing + # PYTHONPATH="$program_PYTHONPATH:SourcetrailDB/build/bindings_python" \ + # ${python}/bin/python test.py + PYTHONPATH="$program_PYTHONPATH:SourcetrailDB/build/bindings_python" \ + ${python}/bin/python test_shallow.py + ''; + + installPhase = '' + shopt -s extglob + mkdir -p $out/{bin,libexec} + + cp !(run).py $out/libexec # copy *.py excluding run.py (needs extglob) + cat <(echo '#!/usr/bin/env python') run.py > $out/libexec/run.py + chmod +x $out/libexec/run.py + ln -s $out/libexec/run.py $out/bin/SourcetrailPythonIndexer + + pushd SourcetrailDB/build/bindings_python + cp sourcetraildb.py $out/libexec + cp _sourcetraildb* $out/libexec/_sourcetraildb.so + popd + + wrapPythonProgramsIn "$out/libexec" "$pythonPath" + ''; + + doCheck = true; + + meta = with lib; { + description = "Python indexer for Sourcetrail"; + homepage = "https://github.com/CoatiSoftware/SourcetrailPythonIndexer"; + license = licenses.gpl3; + }; +} diff --git a/pkgs/development/tools/spirv-tools/default.nix b/pkgs/development/tools/spirv-tools/default.nix index f6702229374..bac10d24442 100644 --- a/pkgs/development/tools/spirv-tools/default.nix +++ b/pkgs/development/tools/spirv-tools/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchFromGitHub, cmake, python3, spirv-headers }: let # Update spirv-headers rev in lockstep according to DEPs file - version = "2019.4"; + version = "2020.2"; in stdenv.mkDerivation rec { @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { owner = "KhronosGroup"; repo = "SPIRV-Tools"; rev = "v${version}"; - sha256 = "17bbvhk4p42x4jlvcr5p9903xiiryw57c8yyfxmqik10s8601an9"; + sha256 = "00b7xgyrcb2qq63pp3cnw5q1xqx2d9rfn65lai6n6r89s1vh3vg6"; }; enableParallelBuilding = true; diff --git a/pkgs/development/tools/systemfd/default.nix b/pkgs/development/tools/systemfd/default.nix index a0037050b65..c25f0491c67 100644 --- a/pkgs/development/tools/systemfd/default.nix +++ b/pkgs/development/tools/systemfd/default.nix @@ -8,7 +8,7 @@ crateOverrides = defaultCrateOverrides // { systemfd = attrs: { meta = { - description = "A convenient helper for passing sockets into another process."; + description = "A convenient helper for passing sockets into another process"; homepage = "https://github.com/mitsuhiko/systemfd"; license = lib.licenses.asl20; maintainers = [ lib.maintainers.adisbladis ]; diff --git a/pkgs/development/tools/toxiproxy/default.nix b/pkgs/development/tools/toxiproxy/default.nix index 3587454b84b..448c14ffaf1 100644 --- a/pkgs/development/tools/toxiproxy/default.nix +++ b/pkgs/development/tools/toxiproxy/default.nix @@ -20,7 +20,7 @@ buildGoPackage rec { ''; meta = { - description = "Proxy for for simulating network conditions."; + description = "Proxy for for simulating network conditions"; maintainers = with lib.maintainers; [ avnik ]; license = lib.licenses.mit; }; diff --git a/pkgs/development/tools/tracy/default.nix b/pkgs/development/tools/tracy/default.nix index d0d2cbd79e2..5839a7771d0 100644 --- a/pkgs/development/tools/tracy/default.nix +++ b/pkgs/development/tools/tracy/default.nix @@ -40,7 +40,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "A real time, nanosecond resolution, remote telemetry frame profiler for games and other applications."; + description = "A real time, nanosecond resolution, remote telemetry frame profiler for games and other applications"; homepage = "https://github.com/wolfpld/tracy"; platforms = platforms.linux ++ platforms.darwin; license = licenses.bsd3; diff --git a/pkgs/development/tools/tychus/default.nix b/pkgs/development/tools/tychus/default.nix index 5eb6dd09789..edd428480a0 100644 --- a/pkgs/development/tools/tychus/default.nix +++ b/pkgs/development/tools/tychus/default.nix @@ -20,7 +20,7 @@ buildGoPackage rec { buildFlags = [ "--tags" "release" ]; meta = { - description = "Command line utility to live-reload your application."; + description = "Command line utility to live-reload your application"; homepage = "https://github.com/devlocker/tychus"; license = stdenv.lib.licenses.mit; }; diff --git a/pkgs/development/tools/vogl/default.nix b/pkgs/development/tools/vogl/default.nix index 7821c34bb17..5c3b2abe4a4 100644 --- a/pkgs/development/tools/vogl/default.nix +++ b/pkgs/development/tools/vogl/default.nix @@ -47,7 +47,7 @@ mkDerivation { ]; meta = with lib; { - description = "OpenGL capture / playback debugger."; + description = "OpenGL capture / playback debugger"; homepage = "https://github.com/ValveSoftware/vogl"; license = licenses.mit; maintainers = [ maintainers.deepfire ]; diff --git a/pkgs/development/tools/vulkan-validation-layers/default.nix b/pkgs/development/tools/vulkan-validation-layers/default.nix index 06a1e4025e1..ec696339fdc 100644 --- a/pkgs/development/tools/vulkan-validation-layers/default.nix +++ b/pkgs/development/tools/vulkan-validation-layers/default.nix @@ -1,23 +1,84 @@ -{ stdenv, fetchFromGitHub, cmake, writeText, python3 -, vulkan-headers, vulkan-loader, glslang -, pkgconfig, xlibsWrapper, libxcb, libXrandr, wayland }: +{ stdenv +, fetchFromGitHub +, cmake +, writeText +, python3 +, spirv-headers +, spirv-tools +, vulkan-headers +, vulkan-loader +, glslang +, pkgconfig +, xlibsWrapper +, libxcb +, libXrandr +, wayland +}: +# vulkan-validation-layers requires a custom glslang version, while glslang requires +# custom versions for spirv-tools and spirv-headers. The git hashes required for all +# of these deps is documented upstream here: +# https://github.com/KhronosGroup/Vulkan-ValidationLayers/blob/master/scripts/known_good.json + +let + localGlslang = (glslang.override { + argSpirv-tools = spirv-tools.overrideAttrs (_: { + src = fetchFromGitHub { + owner = "KhronosGroup"; + repo = "SPIRV-Tools"; + rev = "e128ab0d624ce7beb08eb9656bb260c597a46d0a"; + sha256 = "0jj8zrl3dh9fq71jc8msx3f3ifb2vjcb37nl0w4sa8sdhfff74pv"; + }; + }); + argSpirv-headers = spirv-headers.overrideAttrs (_: { + src = fetchFromGitHub { + owner = "KhronosGroup"; + repo = "SPIRV-Headers"; + rev = "ac638f1815425403e946d0ab78bac71d2bdbf3be"; + sha256 = "1lkhs7pxcrfkmiizcxl0w5ajx6swwjv7w3iq586ipgh571fc75gx"; + }; + }); + }).overrideAttrs (_: { + src = fetchFromGitHub { + owner = "KhronosGroup"; + repo = "glslang"; + rev = "e00d27c6d65b7d3e72506a311d7f053da4051295"; + sha256 = "00lzvzk613gpm1vsdxffmx52z3c52ijwvzk4sfhh95p71kdydhgv"; + }; + }); +in stdenv.mkDerivation rec { pname = "vulkan-validation-layers"; - version = "1.2.131.2"; + version = "1.2.141.0"; src = fetchFromGitHub { owner = "KhronosGroup"; repo = "Vulkan-ValidationLayers"; rev = "sdk-${version}"; - sha256 = "1sz0388cr018ldx6ziplvk4v3zbg44pww77kv6kv5wxl69plwfcn"; + sha256 = "1yfas7q122kx74nbjk3wxlyacysgncvlvq081a5dp238m88vkmbj"; }; - nativeBuildInputs = [ pkgconfig cmake python3 ]; - buildInputs = [ vulkan-headers vulkan-loader libxcb libXrandr wayland ]; + nativeBuildInputs = [ + pkgconfig + cmake + python3 + ]; + + buildInputs = [ + localGlslang + localGlslang.spirv-headers + vulkan-headers + vulkan-loader + libxcb + libXrandr + wayland + ]; + enableParallelBuilding = true; - cmakeFlags = [ "-DGLSLANG_INSTALL_DIR=${glslang}" ]; + cmakeFlags = [ + "-DGLSLANG_INSTALL_DIR=${localGlslang}" + ]; # Help vulkan-loader find the validation layers setupHook = writeText "setup-hook" '' diff --git a/pkgs/development/tools/xqilla/default.nix b/pkgs/development/tools/xqilla/default.nix index 44a7254a3d7..e97a6f1cdb7 100644 --- a/pkgs/development/tools/xqilla/default.nix +++ b/pkgs/development/tools/xqilla/default.nix @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { configureFlags = [ "--with-xerces=${xercesc}" ]; meta = with stdenv.lib; { - description = "XQilla is an XQuery and XPath 2 library and command line utility written in C++, implemented on top of the Xerces-C library."; + description = "An XQuery and XPath 2 library and command line utility written in C++, implemented on top of the Xerces-C library"; license = licenses.asl20 ; maintainers = with maintainers; [ obadz ]; platforms = platforms.all; diff --git a/pkgs/development/web/deno/default.nix b/pkgs/development/web/deno/default.nix index 45606151e28..b932e1b550c 100644 --- a/pkgs/development/web/deno/default.nix +++ b/pkgs/development/web/deno/default.nix @@ -18,16 +18,16 @@ let in rustPlatform.buildRustPackage rec { pname = "deno"; - version = "1.3.3"; + version = "1.5.0"; src = fetchFromGitHub { owner = "denoland"; repo = pname; rev = "v${version}"; - sha256 = "0jbnx23f1323sh1rfx8rza2pzr4li4199wblrl4vw4zp5hj4qnkm"; + sha256 = "1kl3s5kv3wwh4br6zf0f56bffzjwhgzga93zg39mqry8jvwxp6dx"; fetchSubmodules = true; }; - cargoSha256 = "08zi3ynbi44rdgid9qalgsb5g8dcwclr6ynwxvhi8r0v5i7swwrx"; + cargoSha256 = "1m3wd2gjy2b8a3x9wm49n9z02165afv4c3n13pnqsxcqmd9a764f"; # Install completions post-install nativeBuildInputs = [ installShellFiles ]; @@ -54,6 +54,9 @@ rustPlatform.buildRustPackage rec { # TODO: Move to enhanced installShellCompletion when merged: PR #83630 postInstall = '' + # remove test plugin and test server + rm -rf $out/lib $out/bin/test_server + $out/bin/deno completions bash > deno.bash $out/bin/deno completions fish > deno.fish $out/bin/deno completions zsh > _deno diff --git a/pkgs/development/web/deno/deps.nix b/pkgs/development/web/deno/deps.nix index f6baca6fb01..09c7b3973d9 100644 --- a/pkgs/development/web/deno/deps.nix +++ b/pkgs/development/web/deno/deps.nix @@ -2,11 +2,11 @@ {}: rec { rustyV8Lib = { - version = "0.9.1"; + version = "0.12.0"; sha256s = { - x86_64-linux = "07zph4x3k659ywld27b60as7j06bdbab2ws1pf67iwg7w6h7iash"; - aarch64-linux = "0w9mbsdpkrla3ayaswpdjhiqs74h23qi2sv9355h138pw431ymnx"; - x86_64-darwin = "091kzdg431lvkvcy0401di3if53pii0isk5ipfpsvic82kr7vaqk"; + x86_64-linux = "18pim960fh18wrdkhirlj4hnnbxrk172r7yksdn2k5z9lgccighg"; + aarch64-linux = "0d1c8kcz44n1mqprspnshzbqlqw7mq7vryxpmd49gw3fvhcy66y7"; + x86_64-darwin = "1pc2dfq8p1a8dahkc4g8r6b9zwnvds60zc2lgbf8cj5n0ijd06y1"; }; }; } diff --git a/pkgs/development/web/flyctl/default.nix b/pkgs/development/web/flyctl/default.nix index 8a2cbbe3857..dbc6bfb9a03 100644 --- a/pkgs/development/web/flyctl/default.nix +++ b/pkgs/development/web/flyctl/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "flyctl"; - version = "0.0.140"; + version = "0.0.145"; src = fetchFromGitHub { owner = "superfly"; repo = "flyctl"; rev = "v${version}"; - sha256 = "19yap6n3fw8cf9y6bb6yzl24m4f49jv38j7dj4hs09a5qwh85rz4"; + sha256 = "00by00jslj9nkq89iwvc5f0jcn4lv8i6xs9y9l2x044rq525q08q"; }; preBuild = '' @@ -17,7 +17,7 @@ buildGoModule rec { subPackages = [ "." ]; - vendorSha256 = "0vxfnq9ng7ybkw1xla7m2in2sg6hzvghczqnjrj96n07fln0s9rs"; + vendorSha256 = "018vffgi85aqzb93hbld2f3lrc01jxb9aj5j5ss5c0a689g83gmq"; doCheck = false; diff --git a/pkgs/development/web/insomnia/default.nix b/pkgs/development/web/insomnia/default.nix index d877aa5331d..0640e099341 100644 --- a/pkgs/development/web/insomnia/default.nix +++ b/pkgs/development/web/insomnia/default.nix @@ -1,5 +1,5 @@ { stdenv, makeWrapper, fetchurl, dpkg, alsaLib, atk, cairo, cups, dbus, expat -, fontconfig, freetype, gdk-pixbuf, glib, gnome2, nspr, nss, gtk3, gtk2 +, fontconfig, freetype, gdk-pixbuf, glib, gnome2, pango, nspr, nss, gtk3, gtk2 , at-spi2-atk, gsettings-desktop-schemas, gobject-introspection, wrapGAppsHook , libX11, libXScrnSaver, libXcomposite, libXcursor, libXdamage, libXext , libXfixes, libXi, libXrandr, libXrender, libXtst, libxcb, nghttp2 @@ -40,7 +40,7 @@ in stdenv.mkDerivation rec { gdk-pixbuf glib gnome2.GConf - gnome2.pango + pango gtk2 gtk3 gsettings-desktop-schemas diff --git a/pkgs/development/web/lucky-cli/default.nix b/pkgs/development/web/lucky-cli/default.nix index 8add66bf998..ffa6fba778a 100644 --- a/pkgs/development/web/lucky-cli/default.nix +++ b/pkgs/development/web/lucky-cli/default.nix @@ -2,13 +2,13 @@ crystal.buildCrystalPackage rec { pname = "lucky-cli"; - version = "0.23.1"; + version = "0.24.0"; src = fetchFromGitHub { owner = "luckyframework"; repo = "lucky_cli"; rev = "v${version}"; - sha256 = "0xj7mcmz1rxv3ff530q8c5y1y7hccsmr8azk9nhmrk1q355vnxfw"; + sha256 = "1z1ns6lx5v6nd5s78brpx7jarc9aldca5yrqjrdb14iyw0jlxig4"; }; # the integration tests will try to clone a remote repos diff --git a/pkgs/development/web/newman/default.nix b/pkgs/development/web/newman/default.nix index ed4041ab76f..6aa2413677c 100644 --- a/pkgs/development/web/newman/default.nix +++ b/pkgs/development/web/newman/default.nix @@ -12,7 +12,7 @@ in nodePackages.newman.override { meta = with lib; { homepage = "https://www.getpostman.com"; - description = "Newman is a command-line collection runner for Postman"; + description = "A command-line collection runner for Postman"; maintainers = with maintainers; [ freezeboy ]; license = licenses.asl20; }; diff --git a/pkgs/development/web/nodejs/v10.nix b/pkgs/development/web/nodejs/v10.nix index 1fa46389204..74253e97334 100644 --- a/pkgs/development/web/nodejs/v10.nix +++ b/pkgs/development/web/nodejs/v10.nix @@ -1,13 +1,13 @@ { callPackage, openssl, icu, python2, enableNpm ? true }: let - buildNodejs = callPackage ./nodejs.nix { + buildNodejs = callPackage ./nodejs.nix { inherit openssl icu; python = python2; }; in buildNodejs { inherit enableNpm; - version = "10.22.1"; - sha256 = "0pr569qiabr4m7k38s7rwi3iyzrc5jmx19z2z0k7n4xfvhjlfzzl"; + version = "10.23.0"; + sha256 = "07vlqr0493a569i0npwgkxk5wa4vc7j68jsivchg08y2slwn0dgx"; } diff --git a/pkgs/development/web/nodejs/v12.nix b/pkgs/development/web/nodejs/v12.nix index 0e836226833..83ba9f5d56f 100644 --- a/pkgs/development/web/nodejs/v12.nix +++ b/pkgs/development/web/nodejs/v12.nix @@ -1,13 +1,13 @@ { callPackage, openssl, icu, python2, enableNpm ? true }: let - buildNodejs = callPackage ./nodejs.nix { + buildNodejs = callPackage ./nodejs.nix { inherit openssl icu; python = python2; }; in buildNodejs { inherit enableNpm; - version = "12.18.4"; - sha256 = "02gncjrrjqdwf9ydmg96yn9ldsw539q9w88cknax1djkisqkrw15"; + version = "12.19.0"; + sha256 = "1qainpkakkl3xip9xz2wbs74g95gvc6125cc05z6vyckqi2iqrrv"; } diff --git a/pkgs/development/web/nodejs/v14.nix b/pkgs/development/web/nodejs/v14.nix index 549f29db2fe..820deb5884d 100644 --- a/pkgs/development/web/nodejs/v14.nix +++ b/pkgs/development/web/nodejs/v14.nix @@ -8,6 +8,6 @@ let in buildNodejs { inherit enableNpm; - version = "14.9.0"; - sha256 = "1xkfivr0qci50ksg66szyasdlbiwh2j7ia4n6qc5csih2nvzcbh1"; + version = "14.15.0"; + sha256 = "0fzv05f8rnc0s1a11k0cqfpgv9yawfbdd8qcl8zr25kv5ridhdip"; } diff --git a/pkgs/development/web/nodejs/v15.nix b/pkgs/development/web/nodejs/v15.nix new file mode 100644 index 00000000000..f115e42d0d0 --- /dev/null +++ b/pkgs/development/web/nodejs/v15.nix @@ -0,0 +1,13 @@ +{ callPackage, openssl, python3, enableNpm ? true }: + +let + buildNodejs = callPackage ./nodejs.nix { + inherit openssl; + python = python3; + }; +in + buildNodejs { + inherit enableNpm; + version = "15.0.1"; + sha256 = "03xxnl7q96fmm7lalliwb9kmllz52jqrcsqn9cx9pzhwd1x97l5q"; + } diff --git a/pkgs/development/web/twitter-bootstrap/default.nix b/pkgs/development/web/twitter-bootstrap/default.nix index 336e5af5a4b..14fd9a219ec 100644 --- a/pkgs/development/web/twitter-bootstrap/default.nix +++ b/pkgs/development/web/twitter-bootstrap/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "bootstrap"; - version = "4.5.2"; + version = "4.5.3"; src = fetchurl { url = "https://github.com/twbs/bootstrap/releases/download/v${version}/${pname}-${version}-dist.zip"; - sha256 = "03brvh7fir9ylfr0c5b6kvf79bkjny0wxw4r5q8x8h2niycrkazg"; + sha256 = "0w87b0vbwsdb4ag359y5pppxjvqnxk1949mszzn8ay2i5h47mjq6"; }; buildInputs = [ unzip ]; diff --git a/pkgs/games/arx-libertatis/default.nix b/pkgs/games/arx-libertatis/default.nix index 8b2cf83e509..52935c96cdb 100644 --- a/pkgs/games/arx-libertatis/default.nix +++ b/pkgs/games/arx-libertatis/default.nix @@ -12,13 +12,13 @@ with stdenv.lib; stdenv.mkDerivation { pname = "arx-libertatis"; - version = "2019-07-22"; + version = "2020-10-20"; src = fetchFromGitHub { owner = "arx"; repo = "ArxLibertatis"; - rev = "db77aa26bb8612f711b65e72b1cd8cf6481700c7"; - sha256 = "0c88djyzjna17wjcvkgsfx3011m1rba5xdzdldy1hjmafpqgb4jj"; + rev = "21df2e37664de79e117eff2af164873f05600f4c"; + sha256 = "06plyyh0ddqv1j04m1vclz9j72609pgrp61v8wfjdcln8djm376i"; }; nativeBuildInputs = [ diff --git a/pkgs/games/chessx/default.nix b/pkgs/games/chessx/default.nix index 0ff05556cdb..5b3be969cf1 100644 --- a/pkgs/games/chessx/default.nix +++ b/pkgs/games/chessx/default.nix @@ -48,7 +48,7 @@ mkDerivation rec { meta = with stdenv.lib; { homepage = "http://chessx.sourceforge.net/"; - description = "ChessX allows you to browse and analyse chess games"; + description = "Browse and analyse chess games"; license = licenses.gpl2; maintainers = [ maintainers.luispedro ]; platforms = platforms.linux; diff --git a/pkgs/games/chiaki/default.nix b/pkgs/games/chiaki/default.nix index be4ec7b73b4..27dde97ead7 100644 --- a/pkgs/games/chiaki/default.nix +++ b/pkgs/games/chiaki/default.nix @@ -4,14 +4,14 @@ mkDerivation rec { pname = "chiaki"; - version = "1.2.1"; + version = "1.3.0"; src = fetchFromGitHub { rev = "v${version}"; owner = "thestr4ng3r"; repo = "chiaki"; fetchSubmodules = true; - sha256 = "00lzsbjd1w1bhlblgf7zp112sk8ac09c3bzi5ljxbn02mi0an3qp"; + sha256 = "07w7srxxr8zjp91p5n1sqf4j8lljfrm78lz1m15s2nzlm579015h"; }; nativeBuildInputs = [ @@ -20,6 +20,7 @@ mkDerivation rec { buildInputs = [ ffmpeg libopus qtbase qtmultimedia qtsvg protobuf SDL2 ]; doCheck = true; + installCheckPhase = "$out/bin/chiaki --help"; meta = with lib; { homepage = "https://github.com/thestr4ng3r/chiaki"; diff --git a/pkgs/games/easyrpg-player/default.nix b/pkgs/games/easyrpg-player/default.nix index 79628d0d2ae..f3f039fe78b 100644 --- a/pkgs/games/easyrpg-player/default.nix +++ b/pkgs/games/easyrpg-player/default.nix @@ -5,13 +5,13 @@ stdenv.mkDerivation rec { pname = "easyrpg-player"; - version = "0.6.2.1"; + version = "0.6.2.3"; src = fetchFromGitHub { owner = "EasyRPG"; repo = "Player"; rev = version; - sha256 = "19wpjvlkjmjhdv1dbph6i2da1xx479zhr532x0ili1aphw1j9hi6"; + sha256 = "103ywad12dcfjpf97kyx22smilqrw1f20xcfvjjr4mm3walc2mdp"; }; nativeBuildInputs = [ cmake doxygen pkgconfig ]; diff --git a/pkgs/games/enyo-doom/default.nix b/pkgs/games/enyo-doom/default.nix index ba07b50a1e7..0158dc2b531 100644 --- a/pkgs/games/enyo-doom/default.nix +++ b/pkgs/games/enyo-doom/default.nix @@ -2,13 +2,13 @@ mkDerivation rec { pname = "enyo-doom"; - version = "1.06.9"; + version = "2.0.2"; src = fetchFromGitLab { owner = "sdcofer70"; repo = "enyo-doom"; rev = version; - sha256 = "0vx5zy47cqrqdgyx31wg56ivva0qqiyww8bp1x32ax99danymjyf"; + sha256 = "1s1vpwrrpb9c7r2b0k1j7dlsfasfzmi6prcwql4mxwixrl7f8ms1"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/games/fltrator/default.nix b/pkgs/games/fltrator/default.nix index 7cf16e0783e..e01a3f9fb9c 100644 --- a/pkgs/games/fltrator/default.nix +++ b/pkgs/games/fltrator/default.nix @@ -33,7 +33,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "A simple retro style arcade side-scroller game."; + description = "A simple retro style arcade side-scroller game"; longDescription = '' FLTrator is a simple retro style arcade side-scroller game in which you steer a spaceship through a landscape with hostile rockets and other obstacles. It has ten different levels and a level editor to create new levels or modify the existing.''; # from https://libregamewiki.org/FLTrator homepage = "http://fltrator.sourceforge.net/"; diff --git a/pkgs/games/frotz/default.nix b/pkgs/games/frotz/default.nix index 800da177a3d..6ff163105da 100644 --- a/pkgs/games/frotz/default.nix +++ b/pkgs/games/frotz/default.nix @@ -32,7 +32,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://davidgriffith.gitlab.io/frotz/"; changelog = "https://gitlab.com/DavidGriffith/frotz/-/raw/${version}/NEWS"; - description = "A z-machine interpreter for Infocom games and other interactive fiction."; + description = "A z-machine interpreter for Infocom games and other interactive fiction"; platforms = platforms.unix; maintainers = with maintainers; [ nicknovitski ddelabru ]; license = licenses.gpl2; diff --git a/pkgs/games/gtetrinet/default.nix b/pkgs/games/gtetrinet/default.nix index 824e7afd734..f3cc9ab0006 100644 --- a/pkgs/games/gtetrinet/default.nix +++ b/pkgs/games/gtetrinet/default.nix @@ -31,7 +31,7 @@ stdenv.mkDerivation { enableParallelBuilding = true; meta = { - description = "Client for Tetrinet, a multiplayer online Tetris game."; + description = "Client for Tetrinet, a multiplayer online Tetris game"; longDescription = '' GTetrinet is a client program for Tetrinet, a multiplayer tetris game that is played over the internet. diff --git a/pkgs/games/legendary-gl/default.nix b/pkgs/games/legendary-gl/default.nix index 114aa6ab12a..edf8b853c3c 100644 --- a/pkgs/games/legendary-gl/default.nix +++ b/pkgs/games/legendary-gl/default.nix @@ -7,13 +7,13 @@ buildPythonApplication rec { pname = "legendary-gl"; # Name in pypi - version = "0.0.14"; + version = "0.20.1"; src = fetchFromGitHub { owner = "derrod"; repo = "legendary"; rev = version; - sha256 = "05r88qi8mmbj07wxcpb3fhbl40qscbq1aqb0mnj9bpmi9gf5zll5"; + sha256 = "0kdrhdvh9gxq1zinh5w852f5fjls9902pcrkhkhm2c0vvq7jfass"; }; propagatedBuildInputs = [ requests ]; @@ -27,4 +27,3 @@ buildPythonApplication rec { maintainers = with maintainers; [ wchresta ]; }; } - diff --git a/pkgs/games/lugaru/default.nix b/pkgs/games/lugaru/default.nix index 6620074418d..d938c031652 100644 --- a/pkgs/games/lugaru/default.nix +++ b/pkgs/games/lugaru/default.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DSYSTEM_INSTALL=ON" ]; meta = { - description = "Lugaru HD: Third person ninja rabbit fighting game"; + description = "Third person ninja rabbit fighting game"; homepage = "https://osslugaru.gitlab.io"; maintainers = [ maintainers.genesis ]; platforms = platforms.linux; diff --git a/pkgs/games/megaglest/default.nix b/pkgs/games/megaglest/default.nix index c34ca5dee95..b7ab42ed730 100644 --- a/pkgs/games/megaglest/default.nix +++ b/pkgs/games/megaglest/default.nix @@ -49,7 +49,7 @@ stdenv.mkDerivation { ''; meta = { - description = "MegaGlest is an entertaining free (freeware and free software) and open source cross-platform 3D real-time strategy (RTS) game"; + description = "An entertaining free (freeware and free software) and open source cross-platform 3D real-time strategy (RTS) game"; license = stdenv.lib.licenses.gpl3; homepage = "http://megaglest.org/"; maintainers = [ stdenv.lib.maintainers.matejc ]; diff --git a/pkgs/games/minecraft/default.nix b/pkgs/games/minecraft/default.nix index 9bdf979d7dd..60f89bea0e8 100644 --- a/pkgs/games/minecraft/default.nix +++ b/pkgs/games/minecraft/default.nix @@ -10,7 +10,7 @@ , nss , nspr , fontconfig -, gnome2 +, pango , cairo , expat , alsaLib @@ -59,7 +59,7 @@ let freetype gdk-pixbuf glib - gnome2.pango + pango gtk3-x11 gtk2-x11 nspr @@ -86,11 +86,11 @@ in stdenv.mkDerivation rec { pname = "minecraft-launcher"; - version = "2.1.17627"; + version = "2.1.17785"; src = fetchurl { url = "https://launcher.mojang.com/download/linux/x86_64/minecraft-launcher_${version}.tar.gz"; - sha256 = "04zjjyy0psfxfibzbac9w0kkgqwfpf1qmbj5gspyvhaib7k8may0"; + sha256 = "1r70myf6hqcnkd6v2m2r8cpj060vsjdyp4rfw6d93vwsyqi90jkc"; }; icon = fetchurl { diff --git a/pkgs/games/opendungeons/default.nix b/pkgs/games/opendungeons/default.nix index 467c782211f..64b6c07f4a2 100644 --- a/pkgs/games/opendungeons/default.nix +++ b/pkgs/games/opendungeons/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { NIX_LDFLAGS = "-lpthread"; meta = with stdenv.lib; { - description = "An open source, real time strategy game sharing game elements with the Dungeon Keeper series and Evil Genius."; + description = "An open source, real time strategy game sharing game elements with the Dungeon Keeper series and Evil Genius"; homepage = "https://opendungeons.github.io"; license = [ licenses.gpl3Plus licenses.zlib licenses.mit licenses.cc-by-sa-30 licenses.cc0 licenses.ofl licenses.cc-by-30 ]; platforms = platforms.linux; diff --git a/pkgs/games/openxray/default.nix b/pkgs/games/openxray/default.nix index fe2e978c4cc..394edcf1953 100644 --- a/pkgs/games/openxray/default.nix +++ b/pkgs/games/openxray/default.nix @@ -50,6 +50,10 @@ in stdenv.mkDerivation rec { preConfigure = '' substituteInPlace src/xrCore/xrCore.cpp \ --replace /usr/share $out/share + + # https://github.com/OpenXRay/xray-16/issues/667 + echo "inline const char* xr_sys_errlist[100] = {};" >> src/Common/PlatformLinux.inl + echo "#define _sys_errlist xr_sys_errlist" >> src/Common/PlatformLinux.inl ''; postInstall = '' diff --git a/pkgs/games/pacvim/default.nix b/pkgs/games/pacvim/default.nix index d7805ad66fb..6e28753b4f3 100644 --- a/pkgs/games/pacvim/default.nix +++ b/pkgs/games/pacvim/default.nix @@ -15,7 +15,7 @@ stdenv.mkDerivation { meta = with stdenv.lib; { homepage = "https://github.com/jmoon018/PacVim"; - description = "PacVim is a game that teaches you vim commands."; + description = "A game that teaches you vim commands"; maintainers = with maintainers; [ infinisil ]; license = licenses.lgpl3; platforms = platforms.unix; diff --git a/pkgs/games/portmod/default.nix b/pkgs/games/portmod/default.nix new file mode 100644 index 00000000000..07451b8dc2a --- /dev/null +++ b/pkgs/games/portmod/default.nix @@ -0,0 +1,98 @@ +{ lib, stdenv, callPackage, python3Packages, fetchFromGitLab, cacert, + rustPlatform, bubblewrap, git, perlPackages, imagemagick7, fetchurl, fetchzip, + jre, makeWrapper, tr-patcher, tes3cmd }: + +let + version = "2.0_beta9"; + + src = fetchFromGitLab { + owner = "portmod"; + repo = "Portmod"; + rev = "v${version}"; + sha256 = "0a598rb0z6gsdyr4n0lc0yc583njjii07p6vxw75xsh7292vxksc"; + }; + + portmod-rust = rustPlatform.buildRustPackage rec { + inherit src version; + pname = "portmod-rust"; + + cargoSha256 = "14p1aywwbkf2pk85sir5g9ni08zam2hid0kaz111718b006nrxh7"; + + nativeBuildInputs = [ python3Packages.python ]; + + doCheck = false; + }; + + bin-programs = [ + bubblewrap + git + python3Packages.virtualenv + tr-patcher + tes3cmd + imagemagick7 + ]; + +in +python3Packages.buildPythonApplication rec { + inherit src version; + + pname = "portmod"; + + SETUPTOOLS_SCM_PRETEND_VERSION = version; + + # build the rust library independantly + prePatch = '' + substituteInPlace setup.py \ + --replace "from setuptools_rust import Binding, RustExtension" "" \ + --replace "RustExtension(\"portmod.portmod\", binding=Binding.PyO3, strip=True)" "" + ''; + + propagatedBuildInputs = with python3Packages; [ + setuptools_scm + setuptools + requests + chardet + colorama + restrictedpython + appdirs + GitPython + progressbar2 + python-sat + redbaron + patool + packaging + ]; + + checkInputs = with python3Packages; [ + pytestCheckHook + ] ++ bin-programs; + + preCheck = '' + cp ${portmod-rust}/lib/libportmod.so portmod/portmod.so + export HOME=$(mktemp -d) + ''; + + # some test require network access + disabledTests = [ + "test_masters_esp" + "test_logging" + "test_execute_network_permissions" + "test_execute_permissions_bleed" + "test_git" + ]; + + # for some reason, installPhase doesn't copy the compiled binary + postInstall = '' + cp ${portmod-rust}/lib/libportmod.so $out/${python3Packages.python.sitePackages}/portmod/portmod.so + + makeWrapperArgs+=("--prefix" "GIT_SSL_CAINFO" ":" "${cacert}/etc/ssl/certs/ca-bundle.crt" \ + "--prefix" "PATH" ":" "${lib.makeBinPath bin-programs }") + ''; + + meta = { + description = "mod manager for openMW based on portage"; + homepage = "https://gitlab.com/portmod/portmod"; + license = lib.licenses.gpl3; + maintainers = with lib.maintainers; [ marius851000 ]; + }; +} diff --git a/pkgs/games/pro-office-calculator/default.nix b/pkgs/games/pro-office-calculator/default.nix index 7a0e3bec78d..35571ff149a 100644 --- a/pkgs/games/pro-office-calculator/default.nix +++ b/pkgs/games/pro-office-calculator/default.nix @@ -15,7 +15,7 @@ mkDerivation rec { nativeBuildInputs = [ cmake ]; meta = with stdenv.lib; { - description = "Just an ordinary calculator. Nothing to see here..."; + description = "A completely normal office calculator"; homepage = "https://proofficecalculator.com/"; maintainers = [ maintainers.pmiddend ]; platforms = platforms.linux; diff --git a/pkgs/games/quakespasm/vulkan.nix b/pkgs/games/quakespasm/vulkan.nix index deca3bec9cc..39474715021 100644 --- a/pkgs/games/quakespasm/vulkan.nix +++ b/pkgs/games/quakespasm/vulkan.nix @@ -1,4 +1,4 @@ -{ stdenv, SDL2, fetchFromGitHub, makeWrapper, gzip, libvorbis, libmad, vulkan-headers, vulkan-loader }: +{ stdenv, fetchpatch, fetchFromGitHub, makeWrapper, SDL2, gzip, libvorbis, libmad, vulkan-headers, vulkan-loader }: stdenv.mkDerivation rec { pname = "vkquake"; @@ -11,14 +11,28 @@ stdenv.mkDerivation rec { sha256 = "1ry861pk3z02hy7i0yi3xwmd1zma802qzcnlm09w6pslayd9rwbf"; }; + # patches and patchFlags can be deleted with the next release + patches = [ + (fetchpatch { + url = "https://github.com/Novum/vkQuake/commit/a869a22d9b51c68e57646fa20e4c40fc6db36760.patch"; + sha256 = "sha256-ea5lcXTTlJZnuOdF1W+GCYvVgj/gW10tDNyTgfl3Kfs="; + }) + ]; + patchFlags = "-p2"; + sourceRoot = "source/Quake"; nativeBuildInputs = [ - makeWrapper vulkan-headers + makeWrapper + vulkan-headers ]; buildInputs = [ - gzip SDL2 libvorbis libmad vulkan-loader + gzip + SDL2 + libvorbis + libmad + vulkan-loader ]; buildFlags = [ "DO_USERDIRS=1" ]; @@ -30,12 +44,13 @@ stdenv.mkDerivation rec { makeFlags = [ "prefix=$(out) bindir=$(out)/bin" ]; postFixup = '' - wrapProgram $out/bin/vkquake --prefix LD_LIBRARY_PATH : ${vulkan-loader}/lib + wrapProgram $out/bin/vkquake \ + --prefix LD_LIBRARY_PATH : ${vulkan-loader}/lib ''; enableParallelBuilding = true; - meta = { + meta = with stdenv.lib; { description = "Vulkan Quake port based on QuakeSpasm"; homepage = src.meta.homepage; longDescription = '' @@ -47,7 +62,7 @@ stdenv.mkDerivation rec { specialization constants, CPU/GPU parallelism and memory pooling. ''; - platforms = stdenv.lib.platforms.linux; - maintainers = [ stdenv.lib.maintainers.gnidorah ]; + platforms = platforms.linux; + maintainers = with maintainers; [ gnidorah ]; }; } diff --git a/pkgs/games/redeclipse/default.nix b/pkgs/games/redeclipse/default.nix index fc6f50ef97e..d99d7ccb1d9 100644 --- a/pkgs/games/redeclipse/default.nix +++ b/pkgs/games/redeclipse/default.nix @@ -32,7 +32,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "A first person arena shooter, featuring parkour, impulse boosts, and more."; + description = "A first person arena shooter, featuring parkour, impulse boosts, and more"; longDescription = '' Red Eclipse is a fun-filled new take on the first person arena shooter, featuring parkour, impulse boosts, and more. The development is geared diff --git a/pkgs/games/sgt-puzzles/default.nix b/pkgs/games/sgt-puzzles/default.nix index c17439b5e3e..ba6a3601328 100644 --- a/pkgs/games/sgt-puzzles/default.nix +++ b/pkgs/games/sgt-puzzles/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { name = "sgt-puzzles-r${version}"; - version = "20191114.1c0c49d"; + version = "20200610.9aa7b7c"; src = fetchurl { url = "http://www.chiark.greenend.org.uk/~sgtatham/puzzles/puzzles-${version}.tar.gz"; - sha256 = "01fi2f3w71bfbgcfr6gxdp5a9cxh4dshbflv83q2j5rxxs2ll870"; + sha256 = "0rrd1c77ar91zqy4rr4xp1z7x3ywnshlac99cga4hnrgwb7vwl3f"; }; sgt-puzzles-menu = fetchurl { diff --git a/pkgs/games/spring/springlobby.nix b/pkgs/games/spring/springlobby.nix index 9912675ee67..33dc364c5b7 100644 --- a/pkgs/games/spring/springlobby.nix +++ b/pkgs/games/spring/springlobby.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, cmake, wxGTK30, openal, pkgconfig, curl, libtorrentRasterbar +{ stdenv, fetchurl, fetchpatch, cmake, wxGTK30, openal, pkgconfig, curl, libtorrentRasterbar , libpng, libX11, gettext, boost, libnotify, gtk2, doxygen, spring , makeWrapper, glib, minizip, alure, pcre, jsoncpp }: @@ -11,13 +11,20 @@ stdenv.mkDerivation rec { sha256 = "1r1g2hw9ipsmsmzbhsi7bxqra1za6x7j1kw12qzl5psqyq8rqbgs"; }; - nativeBuildInputs = [ pkgconfig ]; + nativeBuildInputs = [ cmake pkgconfig gettext doxygen makeWrapper ]; buildInputs = [ - cmake wxGTK30 openal curl gettext libtorrentRasterbar pcre jsoncpp - boost libpng libX11 libnotify gtk2 doxygen makeWrapper glib minizip alure + wxGTK30 openal curl libtorrentRasterbar pcre jsoncpp + boost libpng libX11 libnotify gtk2 glib minizip alure ]; - patches = [ ./revert_58b423e.patch ./fix-certs.patch ]; # Allows springLobby to continue using system installed spring until #707 is fixed + patches = [ + ./revert_58b423e.patch # Allows springLobby to continue using system installed spring until #707 is fixed + ./fix-certs.patch + (fetchpatch { + url = "https://github.com/springlobby/springlobby/commit/252c4cb156c1442ed9b4faec3f26265bc7c295ff.patch"; + sha256 = "sha256-Nq1F5fRPnCkZwl9KgrfuUmpIMK3hUOyZQYIKElWpmzU="; + }) + ]; enableParallelBuilding = true; diff --git a/pkgs/games/steam/fhsenv.nix b/pkgs/games/steam/fhsenv.nix index 32acef9757b..ecd318e64c6 100644 --- a/pkgs/games/steam/fhsenv.nix +++ b/pkgs/games/steam/fhsenv.nix @@ -223,7 +223,7 @@ in buildFHSUserEnv rec { mkdir -p $out/share/applications ln -s ${steam}/share/icons $out/share ln -s ${steam}/share/pixmaps $out/share - sed "s,/usr/bin/steam,$out/bin/steam,g" ${steam}/share/applications/steam.desktop > $out/share/applications/steam.desktop + sed "s,/usr/bin/steam,steam,g" ${steam}/share/applications/steam.desktop > $out/share/applications/steam.desktop ''; profile = '' diff --git a/pkgs/games/t4kcommon/default.nix b/pkgs/games/t4kcommon/default.nix index f2e226cb570..997ce72db33 100644 --- a/pkgs/games/t4kcommon/default.nix +++ b/pkgs/games/t4kcommon/default.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { buildInputs = [ SDL SDL_image SDL_mixer SDL_net SDL_ttf libpng librsvg libxml2 ]; meta = with stdenv.lib; { - description = "A library of code shared between tuxmath and tuxtype."; + description = "A library of code shared between tuxmath and tuxtype"; homepage = "https://github.com/tux4kids/t4kcommon"; license = licenses.gpl3Plus; maintainers = [ maintainers.aanderse ]; diff --git a/pkgs/games/tes3cmd/default.nix b/pkgs/games/tes3cmd/default.nix new file mode 100644 index 00000000000..3778aadda9c --- /dev/null +++ b/pkgs/games/tes3cmd/default.nix @@ -0,0 +1,28 @@ +{ stdenv, lib, perlPackages, fetchFromGitHub }: + +stdenv.mkDerivation rec { + pname = "tes3cmd"; + version = "0.40-pre-release-2"; + + src = fetchFromGitHub { + owner = "john-moonsugar"; + repo = pname; + rev = "f72e9ed9dd18e8545dd0dc2a4056c250cf505790"; + sha256 = "01zqplp8yb0xnl54963n0zkz66rf3hn2x3i255jlhdhx1c43jba7"; + }; + + buildInputs = [ perlPackages.perl ]; + + installPhase = '' + mkdir -p $out/bin + cp tes3cmd $out/bin/tes3cmd + ''; + + meta = with lib; { + description = "A command line tool for examining and modifying plugins for the Elder Scrolls game Morrowind by Bethesda Softworks"; + homepage = "https://github.com/john-moonsugar/tes3cmd"; + license = licenses.mit; + maintainers = [ maintainers.marius851000 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/games/tr-patcher/default.nix b/pkgs/games/tr-patcher/default.nix new file mode 100644 index 00000000000..68e3eb60895 --- /dev/null +++ b/pkgs/games/tr-patcher/default.nix @@ -0,0 +1,36 @@ +{ stdenv, lib, fetchurl, fetchzip, jre, makeWrapper }: + +let +translation-file = fetchurl { + url = "https://gitlab.com/bmwinger/tr-patcher/-/raw/master/lib/Translation.txt?inline=false"; + sha256 = "136zd2s73b4n1w2n34wxi656bm448748nn3y7a64fd89ysg9n7n8"; +}; +in +stdenv.mkDerivation rec { + pname = "tr-patcher"; + version = "1.0.5"; + + # use the pre compiled source, as compilation is a bit complex + src = fetchzip { + url = "https://gitlab.com/bmwinger/tr-patcher/uploads/b57899980b2351c136393f02977c4fab/tr-patcher-shadow.zip"; + sha256 = "0va7nbmlgf3p2nc0z2b9n1285y4q5rpyjr4w93rdnx38wrhinxnw"; + }; + + nativeBuildInputs = [ makeWrapper ]; + + installPhase = '' + install -Dm644 lib/tr-patcher-all.jar $out/lib/tr-patcher.jar + install -Dm644 ${translation-file} $out/lib/Translation.txt + mkdir -p $out/bin + makeWrapper ${jre}/bin/java $out/bin/tr-patcher \ + --add-flags "-jar $out/lib/tr-patcher.jar" + ''; + + meta = with lib; { + description = "Allow to update dependancies of the Tamriel-Data mod for morrowind"; + homepage = "https://gitlab.com/bmwinger/tr-patcher"; + license = licenses.gpl3; + maintainers = [ maintainers.marius851000 ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/games/trigger/default.nix b/pkgs/games/trigger/default.nix index e5a299052dd..74a56f1fd40 100644 --- a/pkgs/games/trigger/default.nix +++ b/pkgs/games/trigger/default.nix @@ -2,15 +2,26 @@ , zlib, libGLU, libGL, glew, tinyxml-2 }: stdenv.mkDerivation rec { - name = "trigger-rally-0.6.6.1"; + pname = "trigger-rally"; + version = "0.6.6.1"; src = fetchurl { - url = "mirror://sourceforge/trigger-rally/${name}.tar.gz"; + url = "mirror://sourceforge/trigger-rally/${pname}-${version}.tar.gz"; sha256 = "016bc2hczqscfmngacim870hjcsmwl8r3aq8x03vpf22s49nw23z"; }; - buildInputs = - [ SDL2 freealut SDL2_image openal physfs zlib libGLU libGL glew tinyxml-2 ]; + buildInputs = [ + SDL2 + freealut + SDL2_image + openal + physfs + zlib + libGLU + libGL + glew + tinyxml-2 + ]; preConfigure = '' sed s,/usr/local,$out, -i bin/*defs diff --git a/pkgs/games/xbill/default.nix b/pkgs/games/xbill/default.nix index 8a6d4cf14cd..f021d9ac7a7 100644 --- a/pkgs/games/xbill/default.nix +++ b/pkgs/games/xbill/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { }; meta = with stdenv; { - description = "Protect a computer network from getting infected."; + description = "Protect a computer network from getting infected"; homepage = "http://www.xbill.org/"; license = lib.licenses.gpl1; maintainers = with lib.maintainers; [ aw ]; diff --git a/pkgs/misc/cups/drivers/cnijfilter2/default.nix b/pkgs/misc/cups/drivers/cnijfilter2/default.nix index b04ef89d215..ce11f4a0551 100644 --- a/pkgs/misc/cups/drivers/cnijfilter2/default.nix +++ b/pkgs/misc/cups/drivers/cnijfilter2/default.nix @@ -114,7 +114,7 @@ stdenv.mkDerivation { ''; meta = with lib; { - description = "Canon InkJet printer drivers for the MG7500, MG6700, MG6600, MG5600, MG2900, MB2000, MB2300, iB4000, MB5000, MB5300, iP110, E450, MX490, E480, MG7700, MG6900, MG6800, MG5700, MG3600, and G3000 series."; + description = "Canon InkJet printer drivers for the MG7500, MG6700, MG6600, MG5600, MG2900, MB2000, MB2300, iB4000, MB5000, MB5300, iP110, E450, MX490, E480, MG7700, MG6900, MG6800, MG5700, MG3600, and G3000 series"; homepage = "http://support-th.canon-asia.com/contents/TH/EN/0100712901.html"; license = licenses.unfree; platforms = platforms.linux; diff --git a/pkgs/misc/cups/drivers/cnijfilter_4_00/default.nix b/pkgs/misc/cups/drivers/cnijfilter_4_00/default.nix index 9b328c20b71..f6504b598cb 100644 --- a/pkgs/misc/cups/drivers/cnijfilter_4_00/default.nix +++ b/pkgs/misc/cups/drivers/cnijfilter_4_00/default.nix @@ -141,7 +141,7 @@ in stdenv.mkDerivation { dontPatchELF = true; meta = with lib; { - description = "Canon InkJet printer drivers for the MG2400 MG2500 MG3500 MG5500 MG6400 MG6500 MG7100 and P200 series."; + description = "Canon InkJet printer drivers for the MG2400 MG2500 MG3500 MG5500 MG6400 MG6500 MG7100 and P200 series"; homepage = "https://www.canon-europe.com/support/consumer_products/products/fax__multifunctionals/inkjet/pixma_mg_series/pixma_mg5550.aspx?type=drivers&driverdetailid=tcm:13-1094072"; license = licenses.unfree; platforms = platforms.linux; diff --git a/pkgs/misc/documentation-highlighter/default.nix b/pkgs/misc/documentation-highlighter/default.nix index 72f1da6b0de..16b47d01f24 100644 --- a/pkgs/misc/documentation-highlighter/default.nix +++ b/pkgs/misc/documentation-highlighter/default.nix @@ -1,7 +1,7 @@ { stdenv, runCommand }: runCommand "documentation-highlighter" { meta = { - description = "Highlight.js sources for the Nix Ecosystem's documentation."; + description = "Highlight.js sources for the Nix Ecosystem's documentation"; homepage = "https://highlightjs.org"; license = stdenv.lib.licenses.bsd3; platforms = stdenv.lib.platforms.all; diff --git a/pkgs/misc/drivers/epkowa/default.nix b/pkgs/misc/drivers/epkowa/default.nix index 6016cc779f1..eb88476432b 100644 --- a/pkgs/misc/drivers/epkowa/default.nix +++ b/pkgs/misc/drivers/epkowa/default.nix @@ -1,20 +1,27 @@ -{stdenv, fetchurl, fetchpatch, makeWrapper, symlinkJoin, -pkgconfig, libtool, -gtk2, -libxml2, -libxslt, -libusb-compat-0_1, -sane-backends, -rpm, cpio, -getopt, -patchelf, autoPatchelfHook, gcc +{ stdenv +, fetchurl +, fetchpatch +, makeWrapper +, symlinkJoin +, pkgconfig +, libtool +, gtk2 +, libxml2 +, libxslt +, libusb-compat-0_1 +, sane-backends +, rpm +, cpio +, getopt +, patchelf +, autoPatchelfHook +, gcc }: - let common_meta = { - homepage = "http://download.ebz.epson.net/dsc/search/01/search/?OSC=LX"; - license = with stdenv.lib.licenses; epson; - platforms = with stdenv.lib.platforms; linux; - }; + homepage = "http://download.ebz.epson.net/dsc/search/01/search/?OSC=LX"; + license = with stdenv.lib.licenses; epson; + platforms = with stdenv.lib.platforms; linux; +}; in ############################ # @@ -23,7 +30,6 @@ in ############################ # adding a plugin for another printer shouldn't be too difficult, but you need the firmware to test... - let plugins = { v330 = stdenv.mkDerivation rec { name = "iscan-v330-bundle"; @@ -33,7 +39,7 @@ let plugins = { # To find new versions, visit # http://download.ebz.epson.net/dsc/search/01/search/?OSC=LX and search for # some printer like for instance "WF-7210" to get to the most recent - # version. + # version. # NOTE: Don't forget to update the webarchive link too! urls = [ "https://download2.ebz.epson.net/iscan/plugin/perfection-v330/rpm/x64/iscan-perfection-v330-bundle-${version}.x64.rpm.tar.gz" @@ -49,17 +55,17 @@ let plugins = { mkdir $out{,/share,/lib} cp -r ./usr/share/{iscan-data,esci}/ $out/share/ cp -r ./usr/lib64/esci $out/lib - ''; + ''; passthru = { registrationCommand = '' $registry --add interpreter usb 0x04b8 0x0142 "$plugin/lib/esci/libesci-interpreter-perfection-v330 $plugin/share/esci/esfwad.bin" - ''; + ''; hw = "Perfection V330 Photo"; - }; - meta = common_meta // { description = "Plugin to support "+passthru.hw+" scanner in sane."; }; + }; + meta = common_meta // { description = "Plugin to support " + passthru.hw + " scanner in sane"; }; }; - x770 = stdenv.mkDerivation rec { + x770 = stdenv.mkDerivation rec { pname = "iscan-gt-x770-bundle"; version = "2.30.4"; @@ -79,20 +85,20 @@ let plugins = { cp -r usr/lib64 $out/lib mv $out/share/iscan $out/share/esci mv $out/lib/iscan $out/lib/esci - ''; + ''; passthru = { registrationCommand = '' $registry --add interpreter usb 0x04b8 0x0130 "$plugin/lib/esci/libesint7C $plugin/share/esci/esfw7C.bin" - ''; + ''; hw = "Perfection V500 Photo"; - }; - meta = common_meta // { description = "iscan esci x770 plugin for "+passthru.hw; }; }; + meta = common_meta // { description = "iscan esci x770 plugin for " + passthru.hw; }; + }; f720 = stdenv.mkDerivation rec { pname = "iscan-gt-f720-bundle"; version = "2.30.4"; - nativeBuildInputs= [ autoPatchelfHook ]; + nativeBuildInputs = [ autoPatchelfHook ]; buildInputs = [ gcc.cc.lib ]; src = fetchurl { urls = [ @@ -107,16 +113,16 @@ let plugins = { mkdir $out cp -r usr/share $out cp -r usr/lib64 $out/lib - ''; + ''; passthru = { registrationCommand = '' $registry --add interpreter usb 0x04b8 0x0131 "$plugin/lib/esci/libesci-interpreter-gt-f720 $plugin/share/esci/esfw8b.bin" - ''; + ''; hw = "GT-F720, GT-S620, Perfection V30, Perfection V300 Photo"; - }; + }; - meta = common_meta // { description = "iscan esci f720 plugin for "+passthru.hw; }; + meta = common_meta // { description = "iscan esci f720 plugin for " + passthru.hw; }; }; s80 = stdenv.mkDerivation rec { pname = "iscan-gt-s80-bundle"; @@ -139,7 +145,7 @@ let plugins = { cp -r usr/share $out cp -r usr/lib64 $out/lib mkdir $out/share/esci - ''; + ''; passthru = { registrationCommand = '' @@ -147,11 +153,11 @@ let plugins = { $registry --add interpreter usb 0x04b8 0x0137 "$plugin/lib/esci/libesci-interpreter-gt-s50.so" $registry --add interpreter usb 0x04b8 0x0143 "$plugin/lib/esci/libesci-interpreter-gt-s50.so" $registry --add interpreter usb 0x04b8 0x0144 "$plugin/lib/esci/libesci-interpreter-gt-s80.so" - ''; + ''; hw = "ES-D200, ED-D350, ES-D400, GT-S50, GT-S55, GT-S80, GT-S85"; - }; + }; - meta = common_meta // { description = "iscan esci s80 plugin for "+passthru.hw; }; + meta = common_meta // { description = "iscan esci s80 plugin for " + passthru.hw; }; }; s650 = stdenv.mkDerivation rec { name = "iscan-gt-s650-bundle"; @@ -175,16 +181,16 @@ let plugins = { cp -r usr/lib64 $out/lib mv $out/share/iscan $out/share/esci mv $out/lib/iscan $out/lib/esci - ''; + ''; passthru = { registrationCommand = '' $registry --add interpreter usb 0x04b8 0x013c "$plugin/lib/esci/libiscan-plugin-gt-s650 $plugin/share/esci/esfw010c.bin" $registry --add interpreter usb 0x04b8 0x013d "$plugin/lib/esci/libiscan-plugin-gt-s650 $plugin/share/esci/esfw010c.bin" - ''; + ''; hw = "GT-S650, Perfection V19, Perfection V39"; }; - meta = common_meta // { description = "iscan GT-S650 for "+passthru.hw; }; + meta = common_meta // { description = "iscan GT-S650 for " + passthru.hw; }; }; network = stdenv.mkDerivation rec { pname = "iscan-nt-bundle"; @@ -209,7 +215,7 @@ let plugins = { cp -r usr/share $out cp -r usr/lib64 $out/lib mkdir $out/share/esci - ''; + ''; passthru = { registrationCommand = ""; hw = "network"; @@ -219,9 +225,6 @@ let plugins = { }; }; in - - - let fwdir = symlinkJoin { name = "esci-firmware-dir"; paths = stdenv.lib.mapAttrsToList (name: value: value + /share/esci) plugins; @@ -278,14 +281,14 @@ stdenv.mkDerivation rec { }) ./firmware_location.patch ./sscanf.patch - ]; + ]; patchFlags = [ "-p0" ]; - configureFlags = [ "--enable-dependency-reduction" "--disable-frontend"]; + configureFlags = [ "--enable-dependency-reduction" "--disable-frontend" ]; postConfigure = '' echo '#define NIX_ESCI_PREFIX "'${fwdir}'"' >> config.h - ''; + ''; postInstall = '' mkdir -p $out/etc/sane.d @@ -294,18 +297,20 @@ stdenv.mkDerivation rec { ln -s ${iscan-data}/share/iscan-data $out/share/iscan-data mkdir -p $out/lib/iscan ln -s ${plugins.network}/lib/iscan/network $out/lib/iscan/network - ''; + ''; postFixup = '' # iscan-registry is a shell script requiring getopt wrapProgram $out/bin/iscan-registry --prefix PATH : ${getopt}/bin registry=$out/bin/iscan-registry; - '' + - stdenv.lib.concatStrings (stdenv.lib.mapAttrsToList (name: value: '' - plugin=${value}; - ${value.passthru.registrationCommand} - '') plugins); + '' + + stdenv.lib.concatStrings (stdenv.lib.mapAttrsToList + (name: value: '' + plugin=${value}; + ${value.passthru.registrationCommand} + '') + plugins); meta = common_meta // { - description = "sane-epkowa backend for some epson scanners."; + description = "sane-epkowa backend for some epson scanners"; longDescription = '' Includes gui-less iscan (aka. Image Scan! for Linux). Supported hardware: at least : diff --git a/pkgs/misc/drivers/epson-escpr2/default.nix b/pkgs/misc/drivers/epson-escpr2/default.nix index 040ac00085e..0fdf7ecf96d 100644 --- a/pkgs/misc/drivers/epson-escpr2/default.nix +++ b/pkgs/misc/drivers/epson-escpr2/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "epson-inkjet-printer-escpr2"; - version = "1.1.17"; + version = "1.1.23"; src = fetchurl { # To find new versions, visit @@ -11,10 +11,10 @@ stdenv.mkDerivation rec { # version. # NOTE: Don't forget to update the webarchive link too! urls = [ - "https://download3.ebz.epson.net/dsc/f/03/00/11/79/08/18185180910529f498f629f5fc08d3d479cdf5c3/epson-inkjet-printer-escpr2-1.1.17-1lsb3.2.src.rpm" - "https://web.archive.org/web/20200726093746if_/https://download3.ebz.epson.net/dsc/f/03/00/11/79/08/18185180910529f498f629f5fc08d3d479cdf5c3/epson-inkjet-printer-escpr2-1.1.17-1lsb3.2.src.rpm" + "https://download3.ebz.epson.net/dsc/f/03/00/12/04/34/22448566e405c21c3f4436dfd8927176add3e680/epson-inkjet-printer-escpr2-1.1.23-1lsb3.2.src.rpm" + "https://web.archive.org/web/20201019154323if_/https://download3.ebz.epson.net/dsc/f/03/00/12/04/34/22448566e405c21c3f4436dfd8927176add3e680/epson-inkjet-printer-escpr2-1.1.23-1lsb3.2.src.rpm" ]; - sha256 = "0bqqc04z9gayas5p7410la5nad7waykqyw1z1imcqimfl4qrz1m6"; + sha256 = "1d5zd8cwgp3n25ramdqwqb770iim7kh4l7hmhf6a6ivpy0cxpwx6"; }; patches = [ ./cups-filter-ppd-dirs.patch ]; diff --git a/pkgs/misc/emulators/dolphin-emu/master.nix b/pkgs/misc/emulators/dolphin-emu/master.nix index 3865a4a7060..8ef7b610a25 100644 --- a/pkgs/misc/emulators/dolphin-emu/master.nix +++ b/pkgs/misc/emulators/dolphin-emu/master.nix @@ -21,13 +21,13 @@ let }; in stdenv.mkDerivation rec { pname = "dolphin-emu"; - version = "5.0-11824"; + version = "5.0-12716"; src = fetchFromGitHub { owner = "dolphin-emu"; repo = "dolphin"; - rev = "1b97f081b8eff9012132a4124537968bdb0e03e0"; - sha256 = "1v96hcn34040vjsw83k8p0r0nb8rrdcz80h4ngirxzm36b3l7w6m"; + rev = "31524288e3b2450eaefff8202c6d26c4ba3f7333"; + sha256 = "0vv3ahk6zdx2hx5diq4jkhl289wjybqcr4lwinrkfiywb83hcabg"; }; enableParallelBuilding = true; diff --git a/pkgs/misc/emulators/np2kai/default.nix b/pkgs/misc/emulators/np2kai/default.nix index 245bad1d535..0ed47af8f5b 100644 --- a/pkgs/misc/emulators/np2kai/default.nix +++ b/pkgs/misc/emulators/np2kai/default.nix @@ -187,7 +187,7 @@ stdenv.mkDerivation rec { ''; meta = with lib; { - description = "A PC-9801 series emulator."; + description = "A PC-9801 series emulator"; homepage = "https://github.com/AZO234/NP2kai"; license = licenses.mit; maintainers = with maintainers; [ OPNA2608 ]; diff --git a/pkgs/misc/emulators/pcsx2/default.nix b/pkgs/misc/emulators/pcsx2/default.nix index af2cca5494e..a08ee4f057f 100644 --- a/pkgs/misc/emulators/pcsx2/default.nix +++ b/pkgs/misc/emulators/pcsx2/default.nix @@ -1,21 +1,19 @@ -{ alsaLib, cmake, fetchFromGitHub, glib, gettext, gtk2, harfbuzz, lib, libaio -, libpng, libpcap, libxml2, makeWrapper, perl, pkgconfig, portaudio -, SDL2, soundtouch, stdenv, udev, wxGTK, zlib +{ alsaLib, cmake, fetchFromGitHub, gcc-unwrapped, gettext, glib, gtk3, harfbuzz +, libaio, libpcap, libpng, libxml2, makeWrapper, perl, pkgconfig, portaudio +, SDL2, soundtouch, stdenv, udev, wrapGAppsHook, wxGTK, zlib }: -stdenv.mkDerivation rec { +stdenv.mkDerivation { pname = "pcsx2"; - version = "1.6.0"; + version = "unstable-2020-10-10"; src = fetchFromGitHub { owner = "PCSX2"; repo = "pcsx2"; - rev = "v${version}"; - sha256 = "0528kh3275285lvfsykycdhc35c1z8pmccl2s7dfi3va2cp4x8wa"; + rev = "7e2ccd64e8e6049b6059141e8767037463421c33"; + sha256 = "0c7m74ch68p4y9xlld34a9r38kb2py6wlkg4vranc6dicxvi1b3r"; }; - postPatch = "sed '1i#include \"x86intrin.h\"' -i common/src/x86emitter/cpudetect.cpp"; - cmakeFlags = [ "-DCMAKE_INSTALL_PREFIX=${placeholder "out"}" "-DDISABLE_ADVANCE_SIMD=TRUE" @@ -23,31 +21,36 @@ stdenv.mkDerivation rec { "-DDOC_DIR=${placeholder "out"}/share/doc/pcsx2" "-DGAMEINDEX_DIR=${placeholder "out"}/share/pcsx2" "-DGLSL_SHADER_DIR=${placeholder "out"}/share/pcsx2" - "-DwxWidgets_LIBRARIES=${wxGTK}/lib" - "-DwxWidgets_INCLUDE_DIRS=${wxGTK}/include" - "-DwxWidgets_CONFIG_EXECUTABLE=${wxGTK}/bin/wx-config" + "-DGTK3_API=TRUE" "-DPACKAGE_MODE=TRUE" "-DPLUGIN_DIR=${placeholder "out"}/lib/pcsx2" "-DREBUILD_SHADER=TRUE" + "-DUSE_LTO=TRUE" + "-DwxWidgets_CONFIG_EXECUTABLE=${wxGTK}/bin/wx-config" + "-DwxWidgets_INCLUDE_DIRS=${wxGTK}/include" + "-DwxWidgets_LIBRARIES=${wxGTK}/lib" "-DXDG_STD=TRUE" - "-DGTK2_GLIBCONFIG_INCLUDE_DIR=${glib.out}/lib/glib-2.0/include" - "-DGTK2_GDKCONFIG_INCLUDE_DIR=${gtk2.out}/lib/gtk-2.0/include" - "-DGTK2_INCLUDE_DIRS=${gtk2.dev}/include/gtk-2.0" - "-DGTK3_API=FALSE" ]; + postPatch = '' + substituteInPlace cmake/BuildParameters.cmake \ + --replace /usr/bin/gcc-ar ${gcc-unwrapped}/bin/gcc-ar \ + --replace /usr/bin/gcc-nm ${gcc-unwrapped}/bin/gcc-nm \ + --replace /usr/bin/gcc-ranlib ${gcc-unwrapped}/bin/gcc-ranlib + ''; + postFixup = '' wrapProgram $out/bin/PCSX2 \ --set __GL_THREADED_OPTIMIZATIONS 1 ''; - nativeBuildInputs = [ cmake makeWrapper perl pkgconfig ]; + nativeBuildInputs = [ cmake makeWrapper perl pkgconfig wrapGAppsHook ]; buildInputs = [ alsaLib - glib gettext - gtk2 + glib + gtk3 harfbuzz libaio libpcap @@ -71,13 +74,13 @@ stdenv.mkDerivation rec { PC, with many additional features and benefits. ''; homepage = "https://pcsx2.net"; - maintainers = with maintainers; [ hrdinka ]; + maintainers = with maintainers; [ hrdinka samuelgrf ]; # PCSX2's source code is released under LGPLv3+. It However ships # additional data files and code that are licensed differently. # This might be solved in future, for now we should stick with # license.free license = licenses.free; - platforms = platforms.i686; + platforms = platforms.x86; }; } diff --git a/pkgs/misc/emulators/retroarch/cores.nix b/pkgs/misc/emulators/retroarch/cores.nix index 17b1679ed5b..2b9cb5e6d27 100644 --- a/pkgs/misc/emulators/retroarch/cores.nix +++ b/pkgs/misc/emulators/retroarch/cores.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchgit, fetchFromGitHub, fetchFromGitLab, cmake, pkgconfig, makeWrapper, python27, python37, retroarch +{ stdenv, fetchgit, fetchFromGitHub, fetchFromGitLab, fetchpatch, cmake, pkgconfig, makeWrapper, python27, python37, retroarch , alsaLib, fluidsynth, curl, hidapi, libGLU, gettext, glib, gtk2, portaudio, SDL, SDL_net, SDL2, SDL2_image, libGL , ffmpeg_3, pcre, libevdev, libpng, libjpeg, libzip, udev, libvorbis, snappy, which, hexdump , miniupnpc, sfml, xorg, zlib, nasm, libpcap, boost, icu, openssl @@ -630,6 +630,13 @@ in with stdenv.lib.licenses; rev = "02987af9b81a9c3294af8fb9d5a34f9826a2cf4d"; sha256 = "0gl7irmn5d8lk7kf484vgw6kb325fq4ghwsni3il4nm5n2a8yglh"; }; + patches = [ + (fetchpatch { + name = "fix_mame_build_on_make-4.3.patch"; + url = "https://github.com/libretro/mame2016-libretro/commit/5874fae3d124f5e7c8a91634f5473a8eac902e47.patch"; + sha256 = "061f1lcm72glksf475ikl8w10pnbgqa7049ylw06nikis2qdjlfn"; + }) + ]; description = "Port of MAME ~2016 to libretro"; license = gpl2Plus; extraNativeBuildInputs = [ python27 ]; diff --git a/pkgs/misc/emulators/tilem/default.nix b/pkgs/misc/emulators/tilem/default.nix new file mode 100644 index 00000000000..8a6c5075c9b --- /dev/null +++ b/pkgs/misc/emulators/tilem/default.nix @@ -0,0 +1,78 @@ +{ stdenv +, fetchurl +, lib +, libarchive +, autoreconfHook +, pkgconfig +, glib +, libusb1 +, darwin +, acl +, lzma +, bzip2 +, gnome2 +}: +let + libticonv = stdenv.mkDerivation rec { + pname = "libticonv"; + version = "1.1.5"; + src = fetchurl { + url = "mirror://sourceforge/tilp/${pname}-${version}.tar.bz2"; + sha256 = "0y080v12bm81wgjm6fnw7q0yg7scphm8hhrls9njcszj7fkscv9i"; + }; + nativeBuildInputs = [ autoreconfHook pkgconfig ]; + buildInputs = [ glib ]; + configureFlags = [ "--enable-iconv" ]; + }; + libticables2 = stdenv.mkDerivation rec { + pname = "libticables2"; + version = "1.3.5"; + src = fetchurl { + url = "mirror://sourceforge/tilp/${pname}-${version}.tar.bz2"; + sha256 = "08j5di0cgix9vcpdv7b8xhxdjkk9zz7fqfnv3l4apk3jdr8vcvqc"; + }; + nativeBuildInputs = [ autoreconfHook pkgconfig ]; + buildInputs = [ glib libusb1 ]; + configureFlags = [ "--enable-libusb10" ]; + }; + libticalcs2 = stdenv.mkDerivation rec { + pname = "libticalcs2"; + version = "1.1.9"; + src = fetchurl { + url = "mirror://sourceforge/tilp/${pname}-${version}.tar.bz2"; + sha256 = "08c9wgrdnyqcs45mx1bjb8riqq81bzfkhgaijxzn96rhpj40fy3n"; + }; + nativeBuildInputs = [ autoreconfHook pkgconfig ]; + buildInputs = [ glib libticables2 libticonv libtifiles2 lzma bzip2 ] + ++ lib.optionals stdenv.isLinux [ acl ] + ++ lib.optionals stdenv.isDarwin [ darwin.libobjc ]; + }; + libtifiles2 = stdenv.mkDerivation rec { + pname = "libtifiles2"; + version = "1.1.7"; + src = fetchurl { + url = "mirror://sourceforge/tilp/${pname}-${version}.tar.bz2"; + sha256 = "10n9mhlabmaw3ha5ckllxfy6fygs2pmlmj5v6w5v62bvx54kpils"; + }; + nativeBuildInputs = [ autoreconfHook pkgconfig ]; + buildInputs = [ glib libticonv libarchive lzma bzip2 ]; + }; +in +stdenv.mkDerivation rec { + pname = "tilem"; + version = "2.0"; + src = fetchurl { + url = "mirror://sourceforge/${pname}/${pname}-${version}.tar.bz2"; + sha256 = "1ba38xzhp3yf21ip3cgql6jzy49jc34sfnjsl4syxyrd81d269zw"; + }; + nativeBuildInputs = [ pkgconfig ]; + buildInputs = [ glib gnome2.gtk libticonv libtifiles2 libticables2 libticalcs2 ]; + NIX_CFLAGS_COMPILE = [ "-lm" ]; + meta = with stdenv.lib; { + homepage = "http://lpg.ticalc.org/prj_tilem/"; + description = "Emulator and debugger for Texas Instruments Z80-based graphing calculators"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ siraben ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/misc/emulators/wine/sources.nix b/pkgs/misc/emulators/wine/sources.nix index e03cc06d55e..c26b84ffa0a 100644 --- a/pkgs/misc/emulators/wine/sources.nix +++ b/pkgs/misc/emulators/wine/sources.nix @@ -39,16 +39,16 @@ in rec { unstable = fetchurl rec { # NOTE: Don't forget to change the SHA256 for staging as well. - version = "5.18"; + version = "5.20"; url = "https://dl.winehq.org/wine/source/5.x/wine-${version}.tar.xz"; - sha256 = "0hpkcpi6j162bkgcgzzj8y471777q06j7pydl61yp6qscn4g80ch"; + sha256 = "sha256-j1Ui+M6+vbqhL1jhumcaEfZjcuCu33T7kyz1qJOQhhw="; inherit (stable) mono gecko32 gecko64; }; staging = fetchFromGitHub rec { # https://github.com/wine-staging/wine-staging/releases inherit (unstable) version; - sha256 = "0bwcvkf1g1dsq1qmric3jfl85rfjzhq6x4h839hfqc536lkfbrpy"; + sha256 = "sha256-1oWoLb5w9g3wDghpvHpNsJCws7QoZ/E2dqxLuaIgi6o="; owner = "wine-staging"; repo = "wine-staging"; rev = "v${version}"; diff --git a/pkgs/misc/frescobaldi/default.nix b/pkgs/misc/frescobaldi/default.nix index 830d5bea36a..82a3aa8c7be 100644 --- a/pkgs/misc/frescobaldi/default.nix +++ b/pkgs/misc/frescobaldi/default.nix @@ -29,9 +29,9 @@ buildPythonApplication rec { meta = with lib; { homepage = "https://frescobaldi.org/"; - description = ''Frescobaldi is a LilyPond sheet music text editor''; + description = "A LilyPond sheet music text editor"; longDescription = '' - Powerful text editor with syntax highlighting and automatic completion, + Powerful text editor with syntax highlighting and automatic completion, Music view with advanced Point & Click, Midi player to proof-listen LilyPond-generated MIDI files, Midi capturing to enter music, Powerful Score Wizard to quickly setup a music score, Snippet Manager diff --git a/pkgs/misc/hdt/default.nix b/pkgs/misc/hdt/default.nix index 8a4c7c3e6f5..a8cf5c5d4d3 100644 --- a/pkgs/misc/hdt/default.nix +++ b/pkgs/misc/hdt/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "http://www.rdfhdt.org/"; - description = "Header Dictionary Triples (HDT) is a compression format for RDF data that can also be queried for Triple Patterns."; + description = "Header Dictionary Triples (HDT) is a compression format for RDF data that can also be queried for Triple Patterns"; license = licenses.lgpl21; platforms = platforms.linux; maintainers = [ maintainers.koslambrou ]; diff --git a/pkgs/misc/jackaudio/default.nix b/pkgs/misc/jackaudio/default.nix index d5007560762..556bb6a7408 100644 --- a/pkgs/misc/jackaudio/default.nix +++ b/pkgs/misc/jackaudio/default.nix @@ -27,13 +27,13 @@ let in stdenv.mkDerivation rec { name = "${prefix}jack2-${version}"; - version = "1.9.14"; + version = "1.9.16"; src = fetchFromGitHub { owner = "jackaudio"; repo = "jack2"; rev = "v${version}"; - sha256 = "1prxg1l8wrxfp2mh7l4mvjvmml6816fciq1la88ylhwm1qnfvnax"; + sha256 = "0pzgrjy5fi2nif2j442fs3j2bbshxpnmq9kzwcqz54wx1w8fzdfr"; }; nativeBuildInputs = [ pkgconfig python makeWrapper wafHook ]; diff --git a/pkgs/misc/lightspark/default.nix b/pkgs/misc/lightspark/default.nix index 833d8a82990..86177892f43 100644 --- a/pkgs/misc/lightspark/default.nix +++ b/pkgs/misc/lightspark/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub, pkgconfig, cmake, curl, zlib, ffmpeg_3, glew, pcre -, rtmpdump, cairo, boost, SDL2, SDL2_mixer, libjpeg, gnome2, lzma, nasm +, rtmpdump, cairo, boost, SDL2, SDL2_mixer, libjpeg, pango, lzma, nasm , llvm, glibmm }: @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { buildInputs = [ curl zlib ffmpeg_3 glew pcre rtmpdump cairo boost SDL2 SDL2_mixer libjpeg - gnome2.pango lzma nasm llvm glibmm + pango lzma nasm llvm glibmm ]; enableParallelBuilding = true; diff --git a/pkgs/misc/riscv-pk/default.nix b/pkgs/misc/riscv-pk/default.nix index 3e1f63e5e30..6ef50a33a5b 100644 --- a/pkgs/misc/riscv-pk/default.nix +++ b/pkgs/misc/riscv-pk/default.nix @@ -33,7 +33,7 @@ in stdenv.mkDerivation { ''; meta = { - description = "RISC-V Proxy Kernel and Bootloader."; + description = "RISC-V Proxy Kernel and Bootloader"; homepage = "https://github.com/riscv/riscv-pk"; license = stdenv.lib.licenses.bsd3; platforms = stdenv.lib.platforms.riscv; diff --git a/pkgs/misc/screensavers/betterlockscreen/default.nix b/pkgs/misc/screensavers/betterlockscreen/default.nix index 36f89819570..f090156a85c 100644 --- a/pkgs/misc/screensavers/betterlockscreen/default.nix +++ b/pkgs/misc/screensavers/betterlockscreen/default.nix @@ -30,7 +30,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "Betterlockscreen is a simple minimal lock screen which allows you to cache images with different filters and lockscreen with blazing speed."; + description = "A simple minimal lock screen which allows you to cache images with different filters and lockscreen with blazing speed"; homepage = "https://github.com/pavanjadhaw/betterlockscreen"; license = licenses.mit; platforms = platforms.linux; diff --git a/pkgs/misc/screensavers/i3lock-pixeled/default.nix b/pkgs/misc/screensavers/i3lock-pixeled/default.nix index 5ffe5f72265..39497917755 100644 --- a/pkgs/misc/screensavers/i3lock-pixeled/default.nix +++ b/pkgs/misc/screensavers/i3lock-pixeled/default.nix @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "Simple i3lock helper which pixels a screenshot by scaling it down and up to get a pixeled version of the screen when the lock is active."; + description = "Simple i3lock helper which pixels a screenshot by scaling it down and up to get a pixeled version of the screen when the lock is active"; homepage = "https://gitlab.com/Ma27/i3lock-pixeled"; license = licenses.mit; platforms = platforms.linux; diff --git a/pkgs/misc/screensavers/xautolock/default.nix b/pkgs/misc/screensavers/xautolock/default.nix index cefcdbc75a3..d46f772e495 100644 --- a/pkgs/misc/screensavers/xautolock/default.nix +++ b/pkgs/misc/screensavers/xautolock/default.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { installTargets = [ "install" "install.man" ]; meta = with stdenv.lib; { - description = "Launch a given program when your X session has been idle for a given time."; + description = "Launch a given program when your X session has been idle for a given time"; homepage = "http://www.ibiblio.org/pub/linux/X11/screensavers"; maintainers = with maintainers; [ peti ]; platforms = platforms.linux; diff --git a/pkgs/misc/tpm2-pkcs11/default.nix b/pkgs/misc/tpm2-pkcs11/default.nix index a089488b0e0..c4b8eefcc20 100644 --- a/pkgs/misc/tpm2-pkcs11/default.nix +++ b/pkgs/misc/tpm2-pkcs11/default.nix @@ -74,6 +74,6 @@ stdenv.mkDerivation rec { homepage = "https://github.com/tpm2-software/tpm2-pkcs11"; license = licenses.bsd2; platforms = platforms.linux; - maintainers = with maintainers; [ lschuermann ]; + maintainers = with maintainers; [ matthiasbeyer ]; }; } diff --git a/pkgs/misc/uboot/default.nix b/pkgs/misc/uboot/default.nix index 59f73b42439..d3ce3e59876 100644 --- a/pkgs/misc/uboot/default.nix +++ b/pkgs/misc/uboot/default.nix @@ -18,10 +18,10 @@ }: let - defaultVersion = "2020.07"; + defaultVersion = "2020.10"; defaultSrc = fetchurl { url = "ftp://ftp.denx.de/pub/u-boot/u-boot-${defaultVersion}.tar.bz2"; - sha256 = "0sjzy262x93aaqd6z24ziaq19xjjjk5f577ivf768vmvwsgbzxf1"; + sha256 = "08m6f1bh4pdcqbxf983qdb66ccd5vak5cbzc114yf3jwq2yinj0d"; }; buildUBoot = { version ? null diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix index 14c05727e9c..91cbb9d83cb 100644 --- a/pkgs/misc/vim-plugins/generated.nix +++ b/pkgs/misc/vim-plugins/generated.nix @@ -65,12 +65,12 @@ let ale = buildVimPluginFrom2Nix { pname = "ale"; - version = "2020-10-01"; + version = "2020-10-15"; src = fetchFromGitHub { owner = "dense-analysis"; repo = "ale"; - rev = "2d3ed956b944132e1d520446493fa5c9aa8a309f"; - sha256 = "0mlx6g87h9mcvb5fbpx4j06mx7kpjmi8nh11kzm7bfni7bhyjhx4"; + rev = "557a1ed5da70cb443a8650766f4e8ea95e8c0da3"; + sha256 = "105rp35mp6nr79vyz93v36x48yjja38n9n4ngxnpsnm7qf9q8x5n"; }; meta.homepage = "https://github.com/dense-analysis/ale/"; }; @@ -89,12 +89,12 @@ let ansible-vim = buildVimPluginFrom2Nix { pname = "ansible-vim"; - version = "2020-07-13"; + version = "2020-10-15"; src = fetchFromGitHub { owner = "pearofducks"; repo = "ansible-vim"; - rev = "cfdde31672bce2f60bedc36842ab9bca8d28ba5b"; - sha256 = "01lpnvdym9izaq29kbgwa7kl303nnzsn0cpqq75bv7glymglbn0m"; + rev = "7abb04c115742ec9a5f90b86170f0118680cf8ec"; + sha256 = "185b4dari7y05p99756bqld4kk3d124ry4m4j7an8qm0zmpq648m"; }; meta.homepage = "https://github.com/pearofducks/ansible-vim/"; }; @@ -137,12 +137,12 @@ let asyncomplete-vim = buildVimPluginFrom2Nix { pname = "asyncomplete-vim"; - version = "2020-09-17"; + version = "2020-10-21"; src = fetchFromGitHub { owner = "prabirshrestha"; repo = "asyncomplete.vim"; - rev = "20a279b079452dba6e841755f8e9cc5aed75d05e"; - sha256 = "0fsafx0h3nmsrsscg233cyfhm2vj6n1k0n37l2mg0kbv77pzicga"; + rev = "2107094f83e58818ec9b8ca033a75eeeb49db163"; + sha256 = "0bxxl1jj1bigwnvd07wb0ypsp5rn0b5c864m4k44llw7v1r3nrms"; }; meta.homepage = "https://github.com/prabirshrestha/asyncomplete.vim/"; }; @@ -197,12 +197,12 @@ let awesome-vim-colorschemes = buildVimPluginFrom2Nix { pname = "awesome-vim-colorschemes"; - version = "2020-09-11"; + version = "2020-10-24"; src = fetchFromGitHub { owner = "rafi"; repo = "awesome-vim-colorschemes"; - rev = "41a0d9ea4dac077c2050ceaf144f9ed72d6849d8"; - sha256 = "12ivlzyw0iq9jsj3ll2wwbya0ssl4vdk1vvjpg7v4xhxgh96s3jr"; + rev = "6ab7034fde6e6e4307df83d8735643b0fe1ff641"; + sha256 = "0ds3xxb2w645aspn2d1n5543h9vpn869aihq68z0ajkvvl8mr66z"; }; meta.homepage = "https://github.com/rafi/awesome-vim-colorschemes/"; }; @@ -281,12 +281,12 @@ let calendar-vim = buildVimPluginFrom2Nix { pname = "calendar-vim"; - version = "2020-08-15"; + version = "2020-10-16"; src = fetchFromGitHub { owner = "itchyny"; repo = "calendar.vim"; - rev = "9b2dcc18ba104820eac1701aaca44dcc24d90eb4"; - sha256 = "1vy0np1i8whyw9wfkcx564kvlxspwvrp4sznk6iixjln6ha7ngil"; + rev = "84335b66be1e323002380280f265983dc635fd99"; + sha256 = "0p9f7hy751ayjh6pna8gi0vi09lk0dwpi69rh21nidiqiph6n5l5"; }; meta.homepage = "https://github.com/itchyny/calendar.vim/"; }; @@ -305,12 +305,12 @@ let caw-vim = buildVimPluginFrom2Nix { pname = "caw-vim"; - version = "2020-06-01"; + version = "2020-10-09"; src = fetchFromGitHub { owner = "tyru"; repo = "caw.vim"; - rev = "0725e7c273e2c39d8730adc78e0fd20e0d57d173"; - sha256 = "14rsjy5lllmb84vs5q111cb17c6nwc37zf460kh8ii1ijziyqhy2"; + rev = "26279f70cdfe5da2226cd15d7dd832ef6242ed26"; + sha256 = "0sdkcbh0rxx9wf5qa7wwvm8zjk57vvclvss4cadll54zi6q8xq1s"; }; meta.homepage = "https://github.com/tyru/caw.vim/"; }; @@ -389,36 +389,36 @@ let coc-explorer = buildVimPluginFrom2Nix { pname = "coc-explorer"; - version = "2020-09-28"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "weirongxu"; repo = "coc-explorer"; - rev = "c8cc53707a11192ce7b3d6ef62750fea1ea1e9ce"; - sha256 = "08zq9axfyj4c8wvn09dj6dbw9iq7w4pxgms6yh34p3qf8km6pl91"; + rev = "9e3fdc4079255b7e77207011119bf47aae8c08f5"; + sha256 = "0jkm2qf01w8m5x50h24y79l5qmxvwpv2hrl8v34bqhz6jvm10zz4"; }; meta.homepage = "https://github.com/weirongxu/coc-explorer/"; }; coc-fzf = buildVimPluginFrom2Nix { pname = "coc-fzf"; - version = "2020-09-03"; + version = "2020-10-22"; src = fetchFromGitHub { owner = "antoinemadec"; repo = "coc-fzf"; - rev = "2047783c1c9f7bcc020612a719d932e848a2d39d"; - sha256 = "15fxpip9zz5z8np3qrsgadh7p8y8446bxb9vbcr80fcq3j8fmq0v"; + rev = "ca80d81fdb61d1ea32cfaa498153e1f0cb651994"; + sha256 = "1p5i415jk6af4yiqzkgghrhs52x491nrz4d3wrdxad8ydlf64jvx"; }; meta.homepage = "https://github.com/antoinemadec/coc-fzf/"; }; coc-markdownlint = buildVimPluginFrom2Nix { pname = "coc-markdownlint"; - version = "2020-09-29"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "fannheyward"; repo = "coc-markdownlint"; - rev = "876ce05c7a249f2065f4953ea1bfb0a0dadf764c"; - sha256 = "0qxbb45djq724yhfna0s9d7m99wcrv8vkw5ilvp1yz2vfg1b78x9"; + rev = "abdd6450aee119750ddb4dff4a7ab82355a89418"; + sha256 = "1p0wafvn8xzi4bm9bn2fnp8kavw8s6hchpz81ms9770jrx02z5xi"; }; meta.homepage = "https://github.com/fannheyward/coc-markdownlint/"; }; @@ -461,12 +461,12 @@ let coc-nvim = buildVimPluginFrom2Nix { pname = "coc-nvim"; - version = "2020-09-26"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "neoclide"; repo = "coc.nvim"; - rev = "2b83490cb1228abe4bf2c2557f1407321f6af734"; - sha256 = "10pgj0kh4vd0wvsb68l3k2af5rhmh249a2cf4mhbl8jb1g76bnrl"; + rev = "6a903340710a808401120bd1a32f204529f00935"; + sha256 = "1cznyvwgdgbg60hfd423h0fqdyzxhwwy5w88b5rmf44maspjr41i"; }; meta.homepage = "https://github.com/neoclide/coc.nvim/"; }; @@ -522,24 +522,24 @@ let completion-nvim = buildVimPluginFrom2Nix { pname = "completion-nvim"; - version = "2020-10-01"; + version = "2020-10-23"; src = fetchFromGitHub { owner = "nvim-lua"; repo = "completion-nvim"; - rev = "52ccd7c344dca90b62de4ea997c4aa328ce7f020"; - sha256 = "035my2dzahf6svx3f97frv6xx56k4vxxiw0qcwgsbvdp3s4jmb9g"; + rev = "3b6774ed1c1b4720efe3385f06883483f5e16884"; + sha256 = "1vldm13lbfmphim946lnyl30276chw4gnnnq2hxnf67k8a9x8ssc"; }; meta.homepage = "https://github.com/nvim-lua/completion-nvim/"; }; completion-tabnine = buildVimPluginFrom2Nix { pname = "completion-tabnine"; - version = "2020-10-01"; + version = "2020-10-03"; src = fetchFromGitHub { owner = "aca"; repo = "completion-tabnine"; - rev = "49771bca86f185c8cd1017f28b025addae82fe09"; - sha256 = "1kc9ck62k7rj09i3bqhz36661z1501z7ns7q6dr4n07nqylcn5kb"; + rev = "a7e6e2e249fec79f4260f388cd0c8adb38c0b3ad"; + sha256 = "1hnbhr4sgl7a8mj2ygma9avc7hfsv18wxrxypik62x7vijsnv9aq"; }; meta.homepage = "https://github.com/aca/completion-tabnine/"; }; @@ -570,12 +570,12 @@ let conjure = buildVimPluginFrom2Nix { pname = "conjure"; - version = "2020-09-20"; + version = "2020-10-17"; src = fetchFromGitHub { owner = "Olical"; repo = "conjure"; - rev = "a9431410d74f2281ae626727342a5d23d4a12552"; - sha256 = "00b73dxirn3m0rvagskgc00vyrkkcnbxfkn22jnzv84fjvvcj375"; + rev = "0e63269e176232cdd9f1c20d94dfd3b8ad5702a1"; + sha256 = "0ixryjfszx09g27awdaqf5xrc7yjb5mlpc57ph3w61hdv65yps7b"; }; meta.homepage = "https://github.com/Olical/conjure/"; }; @@ -594,12 +594,12 @@ let Coqtail = buildVimPluginFrom2Nix { pname = "Coqtail"; - version = "2020-09-29"; + version = "2020-10-23"; src = fetchFromGitHub { owner = "whonore"; repo = "Coqtail"; - rev = "3c9d27a1a15da1d0f6128402fa766d9e9feebc1e"; - sha256 = "064ldkah460azqibc03cj42vbrl6ns4sj439wsbkqb0qxni5cp57"; + rev = "2aa48079243de581b498f11bb3c4e8aba9e09f71"; + sha256 = "07bxcvvxrfvifxk9yyg0vnisj0fsrb1mzlrrzg8qjrr571cjvj6x"; }; meta.homepage = "https://github.com/whonore/Coqtail/"; }; @@ -642,12 +642,12 @@ let csv-vim = buildVimPluginFrom2Nix { pname = "csv-vim"; - version = "2020-09-02"; + version = "2020-10-07"; src = fetchFromGitHub { owner = "chrisbra"; repo = "csv.vim"; - rev = "e23f03632ad2544f0232b824dd5520fd0b58d235"; - sha256 = "12b127v6yxwik7q2wbyqag4082yzp44sm0x4xwnv55xhlz4w6xws"; + rev = "350af4840991142230103e4f4fc58581d9c07812"; + sha256 = "1ibmrz1h51iy5ffvwalfydgjvdsfjvbpz1s1zmsalpv8mlswrhij"; }; meta.homepage = "https://github.com/chrisbra/csv.vim/"; }; @@ -690,12 +690,12 @@ let ctrlp-vim = buildVimPluginFrom2Nix { pname = "ctrlp-vim"; - version = "2020-09-21"; + version = "2020-10-16"; src = fetchFromGitHub { owner = "ctrlpvim"; repo = "ctrlp.vim"; - rev = "ae5237f8eb9bbc1ad7f8903738e0dc2af194f740"; - sha256 = "18inmxhqzw40sm5ixybbliikbhs10zrqp58qjcd8qc4grj8z6lcp"; + rev = "3866ae170a342fb40d83e1538c37c81c7977b821"; + sha256 = "1ksi46g33ghdrp0nff0fyysxnzw0sr1x5b1ln6xzjv4hkdxiz51k"; }; meta.homepage = "https://github.com/ctrlpvim/ctrlp.vim/"; }; @@ -738,12 +738,12 @@ let defx-nvim = buildVimPluginFrom2Nix { pname = "defx-nvim"; - version = "2020-09-24"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "Shougo"; repo = "defx.nvim"; - rev = "a84cb7f88afc904123858b226240c3339b7ca814"; - sha256 = "1ryc0ahrjjc20344jbvxz9miyrqdjs7gz6r2awkf0ayyz6nx5gch"; + rev = "77956f66722f3a8b7d7e1c86092a3ac84af70b90"; + sha256 = "0iqib5fgz2hal3qm4az4glikml6i33sfk7fgwmdy5kgkx512vqb8"; }; meta.homepage = "https://github.com/Shougo/defx.nvim/"; }; @@ -786,12 +786,12 @@ let denite-nvim = buildVimPluginFrom2Nix { pname = "denite-nvim"; - version = "2020-09-23"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "Shougo"; repo = "denite.nvim"; - rev = "cb06d89aaded0bc2418d03a8fbb263ca0ef70406"; - sha256 = "0dk4w6yljnhf4qwhgamnw2bnmqikgqb8nshifn5l767sm3hk7d2h"; + rev = "48f485e080c2b6a21a374b5b2000c091d30c5f56"; + sha256 = "0wg1dz57hz0rq14f5lyqh9hbdyw3c1hdwpgwckd7qrncbcfbvbw2"; }; meta.homepage = "https://github.com/Shougo/denite.nvim/"; }; @@ -1004,11 +1004,11 @@ let deoplete-vim-lsp = buildVimPluginFrom2Nix { pname = "deoplete-vim-lsp"; - version = "2020-07-24"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "lighttiger2505"; repo = "deoplete-vim-lsp"; - rev = "2ea06074dc07c67ccffc24b976b92e17e9d795d1"; + rev = "cb5af558e892a70648587e673fc251409ac3dc72"; sha256 = "03rpw1z5fgglba7vymi3ln810nh5x3x9hjqlm41shdik9pgmg867"; }; meta.homepage = "https://github.com/lighttiger2505/deoplete-vim-lsp/"; @@ -1028,12 +1028,12 @@ let deoplete-nvim = buildVimPluginFrom2Nix { pname = "deoplete-nvim"; - version = "2020-09-12"; + version = "2020-10-23"; src = fetchFromGitHub { owner = "Shougo"; repo = "deoplete.nvim"; - rev = "895fafe572585b807a31d4ba2835188d7b38cc41"; - sha256 = "1irhdp1bdwpyj9g40mb4n1mjw2f1hxswhgf2f1nkv1cx0j8pvkzd"; + rev = "c09da81e9824fc113323573abea3a2ec13c04409"; + sha256 = "0b8sp5kj6nnv3wlkpy2q14k9v9qxsf8lskb11rssrjwhfys12bn0"; }; meta.homepage = "https://github.com/Shougo/deoplete.nvim/"; }; @@ -1076,12 +1076,12 @@ let direnv-vim = buildVimPluginFrom2Nix { pname = "direnv-vim"; - version = "2020-09-27"; + version = "2020-10-10"; src = fetchFromGitHub { owner = "direnv"; repo = "direnv.vim"; - rev = "c2b9f7834c1a2d28c4e022485b870c19de0c6ada"; - sha256 = "0qk1kywr4zdhvvpc77868g3aclwbmm5p4zvsxj65qb4bpzddxvrd"; + rev = "983bbce66b39cd17e4b8348078a41a5782cd73a0"; + sha256 = "1n144nihbcaljgbxv4kfg8af3dxvf9i4cxdz5qq12rzslwqgdsi1"; }; meta.homepage = "https://github.com/direnv/direnv.vim/"; }; @@ -1100,36 +1100,36 @@ let dracula-vim = buildVimPluginFrom2Nix { pname = "dracula-vim"; - version = "2020-07-19"; + version = "2020-10-19"; src = fetchFromGitHub { owner = "dracula"; repo = "vim"; - rev = "b64b22affafca7d3831a20949115b91031d596ec"; - sha256 = "1f5hwfcrsfq3yk53kkn4syaxmri8wh8h6rpq867468b8rdcnhq01"; + rev = "80d2667818492e2e7630894f2b3eb7fdae1e240f"; + sha256 = "1bq52larf3bbhrrzqg2gx737zc1xrg8qa916ny2qh9w7lsjjwf4h"; }; meta.homepage = "https://github.com/dracula/vim/"; }; echodoc-vim = buildVimPluginFrom2Nix { pname = "echodoc-vim"; - version = "2020-06-08"; + version = "2020-10-13"; src = fetchFromGitHub { owner = "Shougo"; repo = "echodoc.vim"; - rev = "4719626bfd477f1189dd9992614ff452d3ea3caf"; - sha256 = "0bpaav7yf06wlzfiyx6iylxan8a9hici041pnmlw7kgf176h6w7b"; + rev = "2a6d6bd6255fbfe152da6bb7f2404afa29479941"; + sha256 = "18nm20ivkcjlh0rgf3c1wdxf1wsc4r95znm2dhgmw1ym4wmh0v4s"; }; meta.homepage = "https://github.com/Shougo/echodoc.vim/"; }; editorconfig-vim = buildVimPluginFrom2Nix { pname = "editorconfig-vim"; - version = "2020-06-02"; + version = "2020-10-21"; src = fetchFromGitHub { owner = "editorconfig"; repo = "editorconfig-vim"; - rev = "0a3c1d8082e38a5ebadcba7bb3a608d88a9ff044"; - sha256 = "1w60rsij0ag74vjal2l75k4g4xv8438a0izvzpy5xir4bby2g7dz"; + rev = "8f6eba5fd6c306e0480ea72917902a2bde162d73"; + sha256 = "057k0fdqgc6m1d6zzql5m1q5lsdsp2s28s9f80h9sgxvrzy36z7y"; fetchSubmodules = true; }; meta.homepage = "https://github.com/editorconfig/editorconfig-vim/"; @@ -1161,12 +1161,12 @@ let emmet-vim = buildVimPluginFrom2Nix { pname = "emmet-vim"; - version = "2020-06-20"; + version = "2020-10-21"; src = fetchFromGitHub { owner = "mattn"; repo = "emmet-vim"; - rev = "dc6cb4fd074f4c371158eeab0c8e4ce4af33534b"; - sha256 = "1cy201c5imbw2pw65f1s0nn8p6vwm00nqlvxwygh18dhy2qv4gfa"; + rev = "60930a968d26fc7abf4f8fd5c3926bdcda2dd787"; + sha256 = "1sf0518rq9idj0sbyplh7y9a481i3y57wwkvdakqvngbpm4bf6ms"; fetchSubmodules = true; }; meta.homepage = "https://github.com/mattn/emmet-vim/"; @@ -1258,12 +1258,12 @@ let flake8-vim = buildVimPluginFrom2Nix { pname = "flake8-vim"; - version = "2017-02-17"; + version = "2020-10-20"; src = fetchFromGitHub { owner = "andviro"; repo = "flake8-vim"; - rev = "01c4af4c68f33b2b3785314bfbf5b3d8d1451795"; - sha256 = "14rv0p1vx4njlplkc72gz7r8sy9vc6n8x9l00zc777x5zzrhgz3g"; + rev = "5bc93f7f26ceb18ccbe116830eaf8ff2baa63994"; + sha256 = "142pgasl0b64a0zxmspdsi636axrgvdx6rh3hwjrb1zlsck19y1a"; fetchSubmodules = true; }; meta.homepage = "https://github.com/andviro/flake8-vim/"; @@ -1331,36 +1331,36 @@ let fzf-vim = buildVimPluginFrom2Nix { pname = "fzf-vim"; - version = "2020-09-11"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "junegunn"; repo = "fzf.vim"; - rev = "3348aef05d02828cd8b071ab29476af2029ea3d3"; - sha256 = "0jyk9c3ksxss8zjk0qqkm95074glbf31a5w78sdzwn352xm8nakp"; + rev = "7d45724fdd323d5eb7d39c8caa2e38e63c5e84a7"; + sha256 = "1v9ry3k8si26h2f9as7dnxrh5qihl3a1spinqqlwsk9faq7d511w"; }; meta.homepage = "https://github.com/junegunn/fzf.vim/"; }; gen_tags-vim = buildVimPluginFrom2Nix { pname = "gen_tags-vim"; - version = "2019-06-28"; + version = "2020-10-12"; src = fetchFromGitHub { owner = "jsfaint"; repo = "gen_tags.vim"; - rev = "208cd0490547bc8f7615eea1b26e4635d2e60a96"; - sha256 = "00s1kxi1bsvz06z7x78kls0k6ncnbqdyz14fvdxxq82f6s1kdvdw"; + rev = "f888a2f8732e08d9f2b638b144c5c826a30953a3"; + sha256 = "16gkczlaani0c0v3hkklriabhkgcs0mg9mrbn8jzfsap15cnkgk5"; }; meta.homepage = "https://github.com/jsfaint/gen_tags.vim/"; }; gentoo-syntax = buildVimPluginFrom2Nix { pname = "gentoo-syntax"; - version = "2020-06-05"; + version = "2020-10-07"; src = fetchFromGitHub { owner = "gentoo"; repo = "gentoo-syntax"; - rev = "47b6900c425614d4ba22223c13a23920f0618d9f"; - sha256 = "0agswv1r5nxbnw0nddhw9vqvrfsvsgh18nwrg83c01sj97075qmv"; + rev = "3d90ee5686e54fb1c3242f10e644a789579a4372"; + sha256 = "0qvfqw38vk9ijwhgivjwh289vnmzc2p7cp6jiqpj98zsnank0yw2"; }; meta.homepage = "https://github.com/gentoo/gentoo-syntax/"; }; @@ -1475,12 +1475,12 @@ let gruvbox-community = buildVimPluginFrom2Nix { pname = "gruvbox-community"; - version = "2020-05-23"; + version = "2020-10-04"; src = fetchFromGitHub { owner = "gruvbox-community"; repo = "gruvbox"; - rev = "933b6cc35a0f180ff488ef20c7b534c9c3b6701a"; - sha256 = "0w10hcz66dgilx6fv07bb3zsf5c0x9gv4vhp15c5fp2rzwxi10bn"; + rev = "9e71159ffa93be1e772d2cb3c78ee940f7b308ba"; + sha256 = "0n3jzzjbfrs3r26bagry3pvqcy2asb1jkcfqvabmycs6y6w8sx01"; }; meta.homepage = "https://github.com/gruvbox-community/gruvbox/"; }; @@ -1499,12 +1499,12 @@ let gv-vim = buildVimPluginFrom2Nix { pname = "gv-vim"; - version = "2020-05-22"; + version = "2020-10-16"; src = fetchFromGitHub { owner = "junegunn"; repo = "gv.vim"; - rev = "61d877d23caaad9009d672f90fe2ab576ab93d2d"; - sha256 = "00h4d6jah0fdr5m8x9c1gmmm9wskplixnvbbalfbbpc599xhgj83"; + rev = "486b5c4e960d5ec9e79888939534b7b2fc7453ad"; + sha256 = "07pj94s5kf8qgwdz73xbb7b2h3w6gkv4sw9faicdb6hla3i19d9b"; }; meta.homepage = "https://github.com/junegunn/gv.vim/"; }; @@ -1547,12 +1547,12 @@ let hoon-vim = buildVimPluginFrom2Nix { pname = "hoon-vim"; - version = "2020-02-19"; + version = "2020-10-15"; src = fetchFromGitHub { owner = "urbit"; repo = "hoon.vim"; - rev = "116f29971a2fbec8e484daeba8afd9d60f85800f"; - sha256 = "029rm8njpsa0lhhh504975lmw7yr2bkvxi2gag1l9279r629vp2r"; + rev = "aeb307427f2ffaf756cb04574f5ed0d77626d51e"; + sha256 = "11nsws8q54lya6lk51zkwhv47rmidg1wclgd4vq7v4jwc25gw8id"; }; meta.homepage = "https://github.com/urbit/hoon.vim/"; }; @@ -1643,12 +1643,12 @@ let indentLine = buildVimPluginFrom2Nix { pname = "indentLine"; - version = "2020-09-04"; + version = "2020-10-12"; src = fetchFromGitHub { owner = "Yggdroot"; repo = "indentLine"; - rev = "5bf49035522dea94b72638d039828c6f84b7ae34"; - sha256 = "098ng8f2dv29pgvai4nsm2d5qyw44gd9dxjmdc3mdznzmn0clvvf"; + rev = "6107214eff0cac5d9810d29ae8614ddfdfcd986b"; + sha256 = "1aycs427w9w5hjnif5c13wf3jd872a3i94zzdfisfrispbs3ad2m"; }; meta.homepage = "https://github.com/Yggdroot/indentLine/"; }; @@ -1691,12 +1691,12 @@ let is-vim = buildVimPluginFrom2Nix { pname = "is-vim"; - version = "2017-10-30"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "haya14busa"; repo = "is.vim"; - rev = "61d5029310c69bde700b2d46a454f80859b5af17"; - sha256 = "1nnf6y62mc0rj7hbrapfkmr91ypsqkzhwgpfx7pahz8m3a2324q6"; + rev = "d393cb346dcdf733fecd7bbfc45b70b8c05e9eb4"; + sha256 = "03rvhvqx59c6lp9xh6zry3ynppngqn53swl3v9gmc3ynh3l1jdzq"; }; meta.homepage = "https://github.com/haya14busa/is.vim/"; }; @@ -1764,12 +1764,12 @@ let julia-vim = buildVimPluginFrom2Nix { pname = "julia-vim"; - version = "2020-09-07"; + version = "2020-10-14"; src = fetchFromGitHub { owner = "JuliaEditorSupport"; repo = "julia-vim"; - rev = "33116e1135ffa0c09997c111785beb5232efc7cf"; - sha256 = "1qx1xpnnzvb5h86mrywx56yqw5lbma9xmwdgi6dh6x8mzald7agw"; + rev = "a4bc8a2032e9da4dbfc5f527c2415b68fc09b9bd"; + sha256 = "1ir0yj0f0ggndxfpg8119vcb1l7qagf5qsl9s94ghbka6qqvlia3"; }; meta.homepage = "https://github.com/JuliaEditorSupport/julia-vim/"; }; @@ -1836,12 +1836,12 @@ let lean-vim = buildVimPluginFrom2Nix { pname = "lean-vim"; - version = "2019-10-04"; + version = "2020-10-10"; src = fetchFromGitHub { owner = "leanprover"; repo = "lean.vim"; - rev = "2ace010eb32603a65af7921954a0594a02523c6b"; - sha256 = "0wq2lw4xx2qhz1xii9g7i6wz0y43b2icqrm6ypr9jmaac1rhiq7c"; + rev = "c3a99f34a92af8a86e162134276222309e01e896"; + sha256 = "09kz4iy0flwdawhd0phy6jl6zkxp3qdyhl8snl0n12sbskzq7i1b"; }; meta.homepage = "https://github.com/leanprover/lean.vim/"; }; @@ -1872,12 +1872,12 @@ let lf-vim = buildVimPluginFrom2Nix { pname = "lf-vim"; - version = "2020-06-11"; + version = "2020-10-13"; src = fetchFromGitHub { owner = "ptzz"; repo = "lf.vim"; - rev = "8eef4095f0ca4ec37b6877b7b01047146e987c6b"; - sha256 = "17clfc8shmv485r6anpkkcq88x6n2pm54ir1pjy852spzykycika"; + rev = "e541328a67fe10f1323630a30a37b58c934d7819"; + sha256 = "09w33f4cyg9wdj8jas5h43cc7byqfmmm9wyc0xjaw9jxcp78ygg9"; }; meta.homepage = "https://github.com/ptzz/lf.vim/"; }; @@ -1896,12 +1896,12 @@ let lh-vim-lib = buildVimPluginFrom2Nix { pname = "lh-vim-lib"; - version = "2020-09-30"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "LucHermitte"; repo = "lh-vim-lib"; - rev = "df2a495aac2dae95e9869c35d79ed26313f0e7c3"; - sha256 = "1hc4vsyb616qj0irak1c28kgsk7aszk3x94mhrbgy6yxkiv9asgn"; + rev = "b5959b4fa3635d9a7eac587a5c223effca14a970"; + sha256 = "0rfl5c2bf0j6kn1knzg4kywi7xvqhr6impwfh5466ncb4p529vlk"; }; meta.homepage = "https://github.com/LucHermitte/lh-vim-lib/"; }; @@ -1932,38 +1932,38 @@ let lightline-vim = buildVimPluginFrom2Nix { pname = "lightline-vim"; - version = "2020-09-25"; + version = "2020-10-20"; src = fetchFromGitHub { owner = "itchyny"; repo = "lightline.vim"; - rev = "2afc3ab4dda191c75764d3239d1cf56356759dd4"; - sha256 = "0yvinwvzhqb87nqg38azd19c9w0yrkl06mx3agji2mvn23p66ab5"; + rev = "8769bbb84cd22b475275cc4f9f06a25445357a49"; + sha256 = "1q1pmfvzvdsknw67zi00b3bn8y10mx7wjfc1nxfy1h33vzhl2g2r"; }; meta.homepage = "https://github.com/itchyny/lightline.vim/"; }; limelight-vim = buildVimPluginFrom2Nix { pname = "limelight-vim"; - version = "2020-09-07"; + version = "2020-10-13"; src = fetchFromGitHub { owner = "junegunn"; repo = "limelight.vim"; - rev = "815c6122504361d52e10172601471b416d040ca8"; - sha256 = "1af9jz05iphp6738vvfchnvhfxw7wx2hxqs0iyjkmi7w43hsw0sy"; + rev = "4412a84d7fbfd01281bf23d801e95c45c1eacc09"; + sha256 = "1qab2pd1pyfrw0llxd5j11imzqxa3lnnfhr1w2fjn3yanbsxvlvd"; }; meta.homepage = "https://github.com/junegunn/limelight.vim/"; }; lsp_extensions-nvim = buildVimPluginFrom2Nix { pname = "lsp_extensions-nvim"; - version = "2020-09-06"; + version = "2020-10-19"; src = fetchFromGitHub { - owner = "tjdevries"; + owner = "nvim-lua"; repo = "lsp_extensions.nvim"; - rev = "7c3f907c3cf94d5797dcdaf5a72c5364a91e6bd2"; - sha256 = "0c9glx0hn28m5jzz52ny1rcp63s9fdlznvywy4gzwwqi9rscqznz"; + rev = "85ce064c36b93cd8856d6dfc41ea5089764ec1c6"; + sha256 = "0vljxb9cvq042f70cq01n5mf2vd2wg2qpj75nlva9rjhiw9q3qw8"; }; - meta.homepage = "https://github.com/tjdevries/lsp_extensions.nvim/"; + meta.homepage = "https://github.com/nvim-lua/lsp_extensions.nvim/"; }; lushtags = buildVimPluginFrom2Nix { @@ -2292,12 +2292,12 @@ let neoformat = buildVimPluginFrom2Nix { pname = "neoformat"; - version = "2020-09-27"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "sbdchd"; repo = "neoformat"; - rev = "78098f6d1e03fd87ca90a522a752106357dfdc6f"; - sha256 = "0hpml222gj203svm7f9sghzgg0ccjvf0xw9lbnfmn8naxqqqmzw6"; + rev = "2033ca4fa0a820658f07e6a2ffcfb0434d5be071"; + sha256 = "0mz237rbymlq6ksmyakc6mqvskic72fgaw88jywg3cmnjjskqvi2"; }; meta.homepage = "https://github.com/sbdchd/neoformat/"; }; @@ -2340,12 +2340,12 @@ let neosnippet-snippets = buildVimPluginFrom2Nix { pname = "neosnippet-snippets"; - version = "2020-09-24"; + version = "2020-10-08"; src = fetchFromGitHub { owner = "Shougo"; repo = "neosnippet-snippets"; - rev = "886a414e339fe40a47f30da8aa6012a6e0906018"; - sha256 = "0rnqa2cc7imapizg52r5dxzq2x2m8sxvds2q27ablzcvvghsjh96"; + rev = "7448233dfd40e7f0a1075fefa76d1d5a84e5d28a"; + sha256 = "0dy7fgdhkz06720ws4r5gyksqg60hb2v157vkbzii3jqd5fx8mkf"; }; meta.homepage = "https://github.com/Shougo/neosnippet-snippets/"; }; @@ -2436,24 +2436,24 @@ let nerdtree = buildVimPluginFrom2Nix { pname = "nerdtree"; - version = "2020-08-18"; + version = "2020-10-14"; src = fetchFromGitHub { owner = "preservim"; repo = "nerdtree"; - rev = "577ddc73f0a1d2fd6166ed3268ab8536111037e0"; - sha256 = "0bccr18nr42vwbb4i765yxjw18piyiyd12sm4snbkkxahp9yswf7"; + rev = "14af89743ac1c31ff9bb43682025eda50333a7d5"; + sha256 = "1q50cc9z91v809s65w0zq2s0z5smvghy0fbdjn64mr894ndvrmcv"; }; meta.homepage = "https://github.com/preservim/nerdtree/"; }; nerdtree-git-plugin = buildVimPluginFrom2Nix { pname = "nerdtree-git-plugin"; - version = "2020-09-25"; + version = "2020-10-16"; src = fetchFromGitHub { owner = "Xuyuanp"; repo = "nerdtree-git-plugin"; - rev = "85c4bed898d2d755a2a2ffbfc2433084ce107cdd"; - sha256 = "1m8s5x30k875812fbznvbq3pch5jpy29jr5rpzr0pr2ni5wkv6a4"; + rev = "01b84c63b9ba48628285779fbdfd046dd2bc2970"; + sha256 = "1bmnm5my7r8ranafanwc33qksic444p47i23qsnkkphxk2hiq5q7"; }; meta.homepage = "https://github.com/Xuyuanp/nerdtree-git-plugin/"; }; @@ -2472,12 +2472,12 @@ let nim-vim = buildVimPluginFrom2Nix { pname = "nim-vim"; - version = "2019-04-26"; + version = "2020-10-16"; src = fetchFromGitHub { owner = "zah"; repo = "nim.vim"; - rev = "88f5e708a739fb26be6364ab2fabadf9fffb8d7b"; - sha256 = "0ja8qx9c5g7k4phllvk3vz6s62iwpwsn40w6c32sybjs98jkrw7y"; + rev = "7a8737a4532239c06116ebde0329d8156f3d3b55"; + sha256 = "05xhac416c8zsgqlchc80f7gbjxbyngi6cxziqagdhr6kccc73gi"; }; meta.homepage = "https://github.com/zah/nim.vim/"; }; @@ -2580,12 +2580,12 @@ let nvim-treesitter = buildVimPluginFrom2Nix { pname = "nvim-treesitter"; - version = "2020-10-01"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "nvim-treesitter"; repo = "nvim-treesitter"; - rev = "5debe931333b20fe2b352dd92c03ded837e3df4b"; - sha256 = "1mw5v1qpqz7h9vb89bj1m8wrqk7yvfycmal7y1b5wizl45ssx40m"; + rev = "d9454afd93b8396fb72ff15179b5c59df21713c3"; + sha256 = "0kx2ljal46fj2pgvv2cpflxp6s0qzlry8i5mk0in27qs8bix79jn"; }; meta.homepage = "https://github.com/nvim-treesitter/nvim-treesitter/"; }; @@ -2640,12 +2640,12 @@ let onehalf = buildVimPluginFrom2Nix { pname = "onehalf"; - version = "2020-06-11"; + version = "2020-10-14"; src = fetchFromGitHub { owner = "sonph"; repo = "onehalf"; - rev = "3aa42a39ed3cddde0c53976a700b81b8a7067890"; - sha256 = "0x01c7930hlzvjac3r2wbkdha8j6mmhyk7nwgdazh1z4sxqjyj1l"; + rev = "89923117bc49dd1e0c6b7fdd34bc6dc4d425fe1f"; + sha256 = "0d3d9sp88b41j8yhkn99b0g1y3jbcm3hhf8dw6kq50scrb84g5y3"; }; meta.homepage = "https://github.com/sonph/onehalf/"; }; @@ -2676,12 +2676,12 @@ let palenight-vim = buildVimPluginFrom2Nix { pname = "palenight-vim"; - version = "2020-09-08"; + version = "2020-10-20"; src = fetchFromGitHub { owner = "drewtempelmeyer"; repo = "palenight.vim"; - rev = "294f190da3bd50a7c91fed1b94c92fd0930791ec"; - sha256 = "0s9mna0dcpszz3wyz1qmmrm76rxkjlmyxn7697k5vz4l49zzyi39"; + rev = "847fcf5b1de2a1f9c28fdcc369d009996c6bf633"; + sha256 = "0v7jkg6rpwmyq0wl6lymm2j07r0mzab8lbsnxb0jw34hcpx0rfis"; }; meta.homepage = "https://github.com/drewtempelmeyer/palenight.vim/"; }; @@ -2796,12 +2796,12 @@ let purescript-vim = buildVimPluginFrom2Nix { pname = "purescript-vim"; - version = "2018-12-10"; + version = "2020-10-08"; src = fetchFromGitHub { owner = "purescript-contrib"; repo = "purescript-vim"; - rev = "67ca4dc4a0291e5d8c8da48bffc0f3d2c9739e7f"; - sha256 = "1insh39hzbynr6qxb215qxhpifl5m8i5i0d09a3b6v679i7s11i8"; + rev = "5b4fa3e2970be1353f7d77735c0c9b42dc9885f3"; + sha256 = "11d2jfzimdi6idvs61gjhy7d1g8yk90dfvvw5m8rn9620xrypbgn"; }; meta.homepage = "https://github.com/purescript-contrib/purescript-vim/"; }; @@ -3108,12 +3108,12 @@ let skim-vim = buildVimPluginFrom2Nix { pname = "skim-vim"; - version = "2019-07-31"; + version = "2020-10-20"; src = fetchFromGitHub { owner = "lotabout"; repo = "skim.vim"; - rev = "4e9d9a3deb2060e2e79fede1c213f13ac7866eb5"; - sha256 = "0vpfn2zivk8cf2l841jbd78zl1vzdw1wjf9p0dm6pgr84kj9pkx4"; + rev = "2908249af6b759c79c7834862bd42af3a8bc6d4e"; + sha256 = "1819niha13yzhk7sya1mx8qigjwacd4mdp6s2hkk03l1s6x84dj7"; }; meta.homepage = "https://github.com/lotabout/skim.vim/"; }; @@ -3228,12 +3228,12 @@ let splitjoin-vim = buildVimPluginFrom2Nix { pname = "splitjoin-vim"; - version = "2020-09-21"; + version = "2020-10-25"; src = fetchFromGitHub { owner = "AndrewRadev"; repo = "splitjoin.vim"; - rev = "7148cbc3b9c4f70cea9fdccb72ae246b6d499c20"; - sha256 = "0smaghrigmr8jmw919pmlcvv6a7w7rw2j12gnbks30pi45y547jm"; + rev = "1c1b94a6aa218c429421c82bcc56a216301b6e85"; + sha256 = "1jkny1ag82zvkfjvbzrkkh4s54jcf9hq5n9ak3g691zcddhmrp17"; fetchSubmodules = true; }; meta.homepage = "https://github.com/AndrewRadev/splitjoin.vim/"; @@ -3337,12 +3337,12 @@ let tagbar = buildVimPluginFrom2Nix { pname = "tagbar"; - version = "2020-09-29"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "preservim"; repo = "tagbar"; - rev = "a1e0e7a57144a0af26e219d16f6f00098b271e25"; - sha256 = "04c0s7q7gg1znvzgfdyicscfgbpxj7z5ym7v8zpcg9bfhg29nngv"; + rev = "aa8c59220148640d66e779c1da495e6c5dfa78a9"; + sha256 = "17ll4hgf67pc24r0bf9zz4l4g5xd3bchgh8i7acd2svsxckjjy3z"; }; meta.homepage = "https://github.com/preservim/tagbar/"; }; @@ -3373,16 +3373,28 @@ let tcomment_vim = buildVimPluginFrom2Nix { pname = "tcomment_vim"; - version = "2020-08-23"; + version = "2020-10-09"; src = fetchFromGitHub { owner = "tomtom"; repo = "tcomment_vim"; - rev = "25bdb50a6c5934d4ac9313cef0d7d2168d84803b"; - sha256 = "04dmdydrc4v055qkjn5gfvibyzd30fg00abnk8ijvabfcmhvlh40"; + rev = "cfd1360119f5d41ed161cdf8a3e8502680f2fb4c"; + sha256 = "040vwmgqlhnvjc8d32d9lw3a5lr7flgj4h6gnz6m1zw9jw5l68gh"; }; meta.homepage = "https://github.com/tomtom/tcomment_vim/"; }; + telescope-nvim = buildVimPluginFrom2Nix { + pname = "telescope-nvim"; + version = "2020-10-28"; + src = fetchFromGitHub { + owner = "nvim-lua"; + repo = "telescope.nvim"; + rev = "78cf7ebd7f2dcfcf6fec1d0195ccf46cb479d72c"; + sha256 = "1wl30nqdbl90a9zky524k1cszwii4vg5rhlrrvg4n6hdw9kkyi4m"; + }; + meta.homepage = "https://github.com/nvim-lua/telescope.nvim/"; + }; + tender-vim = buildVimPluginFrom2Nix { pname = "tender-vim"; version = "2020-06-29"; @@ -3470,12 +3482,12 @@ let traces-vim = buildVimPluginFrom2Nix { pname = "traces-vim"; - version = "2020-09-24"; + version = "2020-10-13"; src = fetchFromGitHub { owner = "markonm"; repo = "traces.vim"; - rev = "8ea8d8b98e61cddaff159b4328310f4096c7bb2b"; - sha256 = "1fs7j7v72nv5374pqpx68xjc8kl3fyyhwz4hc029kljqlvgg0lrj"; + rev = "1fb8738cf1e4db06423396dd3576592a94255935"; + sha256 = "0jl7m04rly8y1kslmcmi9f83a87qb3fbk6isqqqd5xgrxxmcj753"; }; meta.homepage = "https://github.com/markonm/traces.vim/"; }; @@ -3494,12 +3506,12 @@ let tsuquyomi = buildVimPluginFrom2Nix { pname = "tsuquyomi"; - version = "2020-03-10"; + version = "2020-10-16"; src = fetchFromGitHub { owner = "Quramy"; repo = "tsuquyomi"; - rev = "85fffd5939c8fc5750b35a937b965af2ad5b0b15"; - sha256 = "1j5wdh0xa5yld4fy2msyjf1qvj8zx0iccc1bw63zzbrcl6rs30gx"; + rev = "144526df5340d3bd0b413e6127c0393de171889a"; + sha256 = "1amizvbpv4mwpi39x9xn5aj1kjkgl4sgh54irnhs4ga76zn0s09d"; }; meta.homepage = "https://github.com/Quramy/tsuquyomi/"; }; @@ -3518,12 +3530,12 @@ let ultisnips = buildVimPluginFrom2Nix { pname = "ultisnips"; - version = "2020-09-08"; + version = "2020-10-21"; src = fetchFromGitHub { owner = "SirVer"; repo = "ultisnips"; - rev = "7941f98337564d4e86cf2b7467b64def4d212794"; - sha256 = "0miihbj9h3ay6iq1ld13ixij3l4h02yrmc7bq8iarw776l89gin0"; + rev = "e6478871c04bb75f3c6cb9b90e171fffbf9c8ff3"; + sha256 = "17f1q0hv89l5mdiv3xrk1l3lnlxj6gbg8pnzcpx5dk4sd14xivd3"; }; meta.homepage = "https://github.com/SirVer/ultisnips/"; }; @@ -3542,12 +3554,12 @@ let unicode-vim = buildVimPluginFrom2Nix { pname = "unicode-vim"; - version = "2020-08-10"; + version = "2020-10-07"; src = fetchFromGitHub { owner = "chrisbra"; repo = "unicode.vim"; - rev = "e9b21134f4e8bc8cd09fa6145749511ac8800f98"; - sha256 = "0rfkd11arkmc2z2m9lz5hnqxfcp2b98hmzgf424s44xyhrn98y16"; + rev = "5f21e3e7e60f6d032daa4769e7ee84885fb0ce4d"; + sha256 = "0sfbv620zl8lqdzsypxcn9gasaaqpwarsynjxa25c4cd843cz3d2"; }; meta.homepage = "https://github.com/chrisbra/unicode.vim/"; }; @@ -3590,12 +3602,12 @@ let vCoolor-vim = buildVimPluginFrom2Nix { pname = "vCoolor-vim"; - version = "2018-10-06"; + version = "2020-10-14"; src = fetchFromGitHub { owner = "KabbAmine"; repo = "vCoolor.vim"; - rev = "8fc037e453f4c2274f590bde4f9fb56167b14e57"; - sha256 = "193cjxfha5xcpfjqqpyfa6xidys1zmmmwlcj7w2cxbr5j5bdnybm"; + rev = "bc19d684af09b1e146cf72176eea1ecded84882c"; + sha256 = "03vaghwqr3k0nls365wk4qwzmvdvdvq41q02c3l5qv2vsdikmz5i"; }; meta.homepage = "https://github.com/KabbAmine/vCoolor.vim/"; }; @@ -3866,24 +3878,36 @@ let vim-airline = buildVimPluginFrom2Nix { pname = "vim-airline"; - version = "2020-09-26"; + version = "2020-10-18"; src = fetchFromGitHub { owner = "vim-airline"; repo = "vim-airline"; - rev = "9614105d09ff0d6e1043ab33028615f107fe94a5"; - sha256 = "11kkzl473l4nrz3k13264sn23pmpr1pdcnmxkzndpx1k0r3f87qy"; + rev = "8608270bd39e9aa31bbdb8cd22b2ba776037feb6"; + sha256 = "1g9nq313zdmklwcnn4lakyndc96qiq2zp9l3cg119i5470y7i1lz"; }; meta.homepage = "https://github.com/vim-airline/vim-airline/"; }; + vim-airline-clock = buildVimPluginFrom2Nix { + pname = "vim-airline-clock"; + version = "2018-05-08"; + src = fetchFromGitHub { + owner = "enricobacis"; + repo = "vim-airline-clock"; + rev = "a752ae89d833ce14f87e303f3f479c01065077ca"; + sha256 = "0wbaxm1k9j4cl5vw1wppsds0afc0h3n2ipp8xhgdh5jswjhr6wlc"; + }; + meta.homepage = "https://github.com/enricobacis/vim-airline-clock/"; + }; + vim-airline-themes = buildVimPluginFrom2Nix { pname = "vim-airline-themes"; - version = "2020-08-27"; + version = "2020-10-08"; src = fetchFromGitHub { owner = "vim-airline"; repo = "vim-airline-themes"; - rev = "155bce6665ab8c83447102e8402cc9d3b7c3b3f3"; - sha256 = "1qavi386va4wnalaf03b19lfxypbkjcjdiiasbdzfnlqpz7d4rwy"; + rev = "e1b0d9f86cf89e84b15c459683fd72730e51a054"; + sha256 = "1mlp2yvam11cyscqy6ifn4chhm4w9ccf5hvjd4g3v2nb31zw5h3f"; }; meta.homepage = "https://github.com/vim-airline/vim-airline-themes/"; }; @@ -3938,12 +3962,12 @@ let vim-autoformat = buildVimPluginFrom2Nix { pname = "vim-autoformat"; - version = "2020-09-29"; + version = "2020-10-18"; src = fetchFromGitHub { owner = "Chiel92"; repo = "vim-autoformat"; - rev = "ed8ea34b649c100c0b60167f8bde12e804627044"; - sha256 = "0dwql5s2j3bmdz0zfmx2f5fdky72mfa91q7kc301rgd9lr5jhqbg"; + rev = "ba41779884d23fc1f865c5077dfea7b53377e7b2"; + sha256 = "1qfq3clgizk7h992x0j3khh53snxm4jjdaq46cy1mgapw4za7d2a"; }; meta.homepage = "https://github.com/Chiel92/vim-autoformat/"; }; @@ -4046,12 +4070,12 @@ let vim-carbon-now-sh = buildVimPluginFrom2Nix { pname = "vim-carbon-now-sh"; - version = "2019-02-14"; + version = "2020-10-25"; src = fetchFromGitHub { owner = "kristijanhusak"; repo = "vim-carbon-now-sh"; - rev = "789b15d17966a1100ed2889d670923dd6d9ff063"; - sha256 = "1vfhdqv8mf8w0s4nv8k2rqzvahvh1lxm4zsd3ks1n334f580w8x4"; + rev = "f348932f5b65bfccaaa54cfc018fbd251240434f"; + sha256 = "17hj0mfl636hdw4m37xgjg8lahiir3g8bh9rfyq0avqqscjhzc58"; }; meta.homepage = "https://github.com/kristijanhusak/vim-carbon-now-sh/"; }; @@ -4082,12 +4106,12 @@ let vim-clap = buildVimPluginFrom2Nix { pname = "vim-clap"; - version = "2020-09-30"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "liuchengxu"; repo = "vim-clap"; - rev = "c6ed3de48693d754ef47ec9422ecb065200f8a70"; - sha256 = "1wnz8fx7nkl4maszghl4q0csw3zi26vnavrvzc447il077sff3wq"; + rev = "6bf6a490c27737f04b92082a5859357ad43887c9"; + sha256 = "1nl3bzkqkzxya5a4wpqiads7xyx4prxyzllp9anyg0imbvqd54ms"; }; meta.homepage = "https://github.com/liuchengxu/vim-clap/"; }; @@ -4118,12 +4142,12 @@ let vim-closetag = buildVimPluginFrom2Nix { pname = "vim-closetag"; - version = "2020-04-09"; + version = "2020-10-09"; src = fetchFromGitHub { owner = "alvan"; repo = "vim-closetag"; - rev = "90cf416c03ed841ad7f3d44f4d6f3192f216176a"; - sha256 = "0kxba7s0s66m2k4j1v8iwq6m5j9843ha67br03dg7d9ya4qiyyw9"; + rev = "bd6bbc33c7e178673aa1dd17a5d249bbd4e3a6a6"; + sha256 = "0nqzjma6mqg19cxq0ck2lym51ajb1x97z497zf9pbp47hkg5875j"; }; meta.homepage = "https://github.com/alvan/vim-closetag/"; }; @@ -4274,12 +4298,12 @@ let vim-cue = buildVimPluginFrom2Nix { pname = "vim-cue"; - version = "2020-09-28"; + version = "2020-10-26"; src = fetchFromGitHub { owner = "jjo"; repo = "vim-cue"; - rev = "1c802d17f86c775d879b2cdebe84efd40dc4bbfd"; - sha256 = "1gp0s4094prxqyzk39igigjqppha7bmy4j36wxl16ns1v8yq4qp1"; + rev = "9e8bef1198817b6bae1143fecd965403d65d2466"; + sha256 = "0rq74znq9mx5p925jd120l5apjqdqp6xy6llzhf2gq5cxpg62hjl"; }; meta.homepage = "https://github.com/jjo/vim-cue/"; }; @@ -4358,12 +4382,12 @@ let vim-dirdiff = buildVimPluginFrom2Nix { pname = "vim-dirdiff"; - version = "2020-03-31"; + version = "2020-10-12"; src = fetchFromGitHub { owner = "will133"; repo = "vim-dirdiff"; - rev = "5bf29d8a41b4ec93e6c04b9d4a6c626b408c27c5"; - sha256 = "0nvhsj12gsjgncpmvg8b1qz675ghfcsib5gj22p7j4l4brih563r"; + rev = "6e4b04c252be6537b888e88e5bef959308a7c993"; + sha256 = "0n5g78021xzswfnghhzfgv5acaqv6s9k10d8kp84b846bjxc5hb7"; }; meta.homepage = "https://github.com/will133/vim-dirdiff/"; }; @@ -4454,11 +4478,11 @@ let vim-easymotion = buildVimPluginFrom2Nix { pname = "vim-easymotion"; - version = "2020-09-29"; + version = "2020-10-25"; src = fetchFromGitHub { owner = "easymotion"; repo = "vim-easymotion"; - rev = "6c9c0547bfcca6a059dfaaf39dcac1b8c4e814c4"; + rev = "41bbb8ce8a3c3acc837895ebd79f8a8bc07b99b3"; sha256 = "1lbn844pv5pnla3qhc01wyyrx3czmr83gax8pr3w6283jwp4di6y"; }; meta.homepage = "https://github.com/easymotion/vim-easymotion/"; @@ -4586,12 +4610,12 @@ let vim-fireplace = buildVimPluginFrom2Nix { pname = "vim-fireplace"; - version = "2020-09-23"; + version = "2020-10-11"; src = fetchFromGitHub { owner = "tpope"; repo = "vim-fireplace"; - rev = "f936a7671888638dec54b86f2e49001a0e5e6005"; - sha256 = "0yvvwi4kf6frrgdwd86p2bpcgh4x2lrhav1yl58q6mrdp2qjl446"; + rev = "a465d598b23b4fa04f0cd61895918cca498f1c9b"; + sha256 = "0ydpx8x931wix35fv9hamms4bl4s1hvzawsalhfi4cg4qnp3dkj8"; }; meta.homepage = "https://github.com/tpope/vim-fireplace/"; }; @@ -4646,12 +4670,12 @@ let vim-floaterm = buildVimPluginFrom2Nix { pname = "vim-floaterm"; - version = "2020-09-16"; + version = "2020-10-19"; src = fetchFromGitHub { owner = "voldikss"; repo = "vim-floaterm"; - rev = "dfaecd8d3fede970a1e4c38e2287e0fa5a264253"; - sha256 = "0wkhib4cawh6hq1ihq851afdj6chkxw4a4dqgjkvz2f6krhpblj5"; + rev = "f6654e2f9c29bd85039a11f305acd4e5222b03f8"; + sha256 = "07bh7hkajfg5gchmi0psy0anaz2rdvhii3p09xml9dfkvrapzdrx"; }; meta.homepage = "https://github.com/voldikss/vim-floaterm/"; }; @@ -4694,12 +4718,12 @@ let vim-fugitive = buildVimPluginFrom2Nix { pname = "vim-fugitive"; - version = "2020-09-30"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "tpope"; repo = "vim-fugitive"; - rev = "4189bdb580743a92f0e81d0ba9359a1c3b253a3c"; - sha256 = "0pbmi9p87bqvf2l5jxq1wdkjjgwn0m3r1lswdbxrn070s8c8rg0a"; + rev = "1a77f1c00e12e8460f39098ec3289c5433d32512"; + sha256 = "14w43j0gnh10kyshikz4cl6m3f04a6hpiqasn2n71isvdd1p24kp"; }; meta.homepage = "https://github.com/tpope/vim-fugitive/"; }; @@ -4718,12 +4742,12 @@ let vim-gist = buildVimPluginFrom2Nix { pname = "vim-gist"; - version = "2020-01-29"; + version = "2020-10-04"; src = fetchFromGitHub { owner = "mattn"; repo = "vim-gist"; - rev = "2158eceb210b0a354bc17aa4144554e5d8bb6c79"; - sha256 = "1dz33c63q7gghz35hyrvbshqw20faccs7bvxlda5w70mkbz9h9c4"; + rev = "4a210316550577c1b6a5cb13b09ce79fba602b9c"; + sha256 = "1c3k2yfaxijg0c8fvh70jqmrc6zyhh57hid7rm77v2kymvimvazg"; }; meta.homepage = "https://github.com/mattn/vim-gist/"; }; @@ -4754,12 +4778,12 @@ let vim-gitgutter = buildVimPluginFrom2Nix { pname = "vim-gitgutter"; - version = "2020-09-11"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "airblade"; repo = "vim-gitgutter"; - rev = "ea79bc01c2efc84cf8e71fbe5fd8adbf4242739d"; - sha256 = "0dv69ganm4rv2909yy9w13y82bik4maa5x1z3kpv0hrd55qay40z"; + rev = "e480eb2b63e337b07e7e5fef288df0b77c06cac5"; + sha256 = "16vidy7kws3n29x9cm4pvb8cvam183wnv2ybvr8iyn8y3p9w3l2j"; }; meta.homepage = "https://github.com/airblade/vim-gitgutter/"; }; @@ -4790,12 +4814,12 @@ let vim-go = buildVimPluginFrom2Nix { pname = "vim-go"; - version = "2020-09-28"; + version = "2020-10-19"; src = fetchFromGitHub { owner = "fatih"; repo = "vim-go"; - rev = "e8da3621d6177e5b0beca318a0f9f5baa44d9350"; - sha256 = "0q7i7c6d7infybw870qlbdgpqddykzw14142ikz8x0sb30ijigxq"; + rev = "a5e2535d31aa1d7c0fa8a4e77ee96b92ad185be5"; + sha256 = "0ixpy4vvvh7kgwq4wvyiw8cm3aj89mql2phf49rmi60d9kli3kn9"; }; meta.homepage = "https://github.com/fatih/vim-go/"; }; @@ -4814,12 +4838,12 @@ let vim-graphql = buildVimPluginFrom2Nix { pname = "vim-graphql"; - version = "2020-09-14"; + version = "2020-10-04"; src = fetchFromGitHub { owner = "jparise"; repo = "vim-graphql"; - rev = "b06a6e62db170f085aa4af7f2439ae7e453eb1d3"; - sha256 = "12qwz7m652jgn86210mbbg1glcmshm67wdhrsb36bxqrx39g1ghh"; + rev = "51c5b178cce145c3aaa22fbc37fd5d64065baebc"; + sha256 = "0kgnyc94fd5i7456vdnad58yn1qcanfp0lg7xdf5dbs1nbarzywg"; }; meta.homepage = "https://github.com/jparise/vim-graphql/"; }; @@ -5030,12 +5054,12 @@ let vim-illuminate = buildVimPluginFrom2Nix { pname = "vim-illuminate"; - version = "2020-08-25"; + version = "2020-10-24"; src = fetchFromGitHub { owner = "RRethy"; repo = "vim-illuminate"; - rev = "56e7df8f402a8302fa7f6cb21760d366a105d94c"; - sha256 = "0j4986pdh06q5d0bq4k6lq0b6bgi1fazng106ykhg3aaxjqqhs37"; + rev = "3f8a03701f271c3dc44313fa1254527021afe748"; + sha256 = "1nwzdp708s5j63qldrmf1vvq2vy6vl89hmlnfygdch9dvmzhbvha"; }; meta.homepage = "https://github.com/RRethy/vim-illuminate/"; }; @@ -5126,12 +5150,12 @@ let vim-javacomplete2 = buildVimPluginFrom2Nix { pname = "vim-javacomplete2"; - version = "2020-07-29"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "artur-shaik"; repo = "vim-javacomplete2"; - rev = "80cf31797a85012b7408701073d743a45a3fbf36"; - sha256 = "19ci5n8rkf4wf4ivqj2mjig4m6phvy14k0zplkbafccaadnc0k21"; + rev = "e25876fd386bb2feda519335587c22e493c78541"; + sha256 = "0g92806r8g243apl0g4i1c9mhmqyy2n10776alii5bgyk6jblh82"; }; meta.homepage = "https://github.com/artur-shaik/vim-javacomplete2/"; }; @@ -5187,12 +5211,12 @@ let vim-jsdoc = buildVimPluginFrom2Nix { pname = "vim-jsdoc"; - version = "2020-08-31"; + version = "2020-10-10"; src = fetchFromGitHub { owner = "heavenshell"; repo = "vim-jsdoc"; - rev = "5bbe872ee41e50bd5b99bf6204d6147dab39cdc5"; - sha256 = "0jmmkqzan5mkc0j05243f5layqj7fny92rl1vlj32ipv8wgdmczn"; + rev = "548767343ff221a4efd0c055a43c022d23fcafc5"; + sha256 = "0scmpjav4zapglybdqilimqb3n805k8gqc46qvkiihprq9j9za4d"; }; meta.homepage = "https://github.com/heavenshell/vim-jsdoc/"; }; @@ -5283,12 +5307,12 @@ let vim-lawrencium = buildVimPluginFrom2Nix { pname = "vim-lawrencium"; - version = "2019-04-10"; + version = "2020-10-10"; src = fetchFromGitHub { owner = "ludovicchabant"; repo = "vim-lawrencium"; - rev = "e0c127cb4e4224453cb88faffd4627b7da499bcb"; - sha256 = "1gvvr04x17157iz83rv45nlbj1qaz90j0l96q3fki3h1b0fw0099"; + rev = "4592f24a50386e02870fa8d508cc7ba8454dc102"; + sha256 = "158hslq4chlqr9mhdpcrbxnygjk4j1pc2caqc3zrwqh9qdk8mvha"; }; meta.homepage = "https://github.com/ludovicchabant/vim-lawrencium/"; }; @@ -5379,24 +5403,24 @@ let vim-lsc = buildVimPluginFrom2Nix { pname = "vim-lsc"; - version = "2020-09-28"; + version = "2020-10-17"; src = fetchFromGitHub { owner = "natebosch"; repo = "vim-lsc"; - rev = "1f6e440c5485b26a75ca1db90bd793cb9a81d57b"; - sha256 = "147rvcjq1h03x3bwgg0ii5jvsxvh4j6bk47z1hk349rn4ssi6fmr"; + rev = "9230c11dfb630ef4a9dadf491f1e1c1b2d86ace8"; + sha256 = "13w3fjwy3iy6j48f16g3bg956dd0fl9ynywd1nqvk4ba305g6crx"; }; meta.homepage = "https://github.com/natebosch/vim-lsc/"; }; vim-lsp = buildVimPluginFrom2Nix { pname = "vim-lsp"; - version = "2020-09-26"; + version = "2020-10-24"; src = fetchFromGitHub { owner = "prabirshrestha"; repo = "vim-lsp"; - rev = "d2b6922250e2fc8fdf7c94c6ca6f0871fe9be1e1"; - sha256 = "1kxqafjfl1f32q05xgkmczfcjg8zr87w1r0hyw054fdzf7krcnmp"; + rev = "fdb69ab91317ce37c167b9820fcce2c35bce47ef"; + sha256 = "13jxzdi3yp4qhlrx9fk0591db1gx3kzmwrmlq3bvicaziip2izsy"; }; meta.homepage = "https://github.com/prabirshrestha/vim-lsp/"; }; @@ -5511,24 +5535,24 @@ let vim-monokai = buildVimPluginFrom2Nix { pname = "vim-monokai"; - version = "2020-09-30"; + version = "2020-10-23"; src = fetchFromGitHub { owner = "crusoexia"; repo = "vim-monokai"; - rev = "054194afce3fdafea33cf21fbfc4d6b3c0e30fc8"; - sha256 = "036w39fwxj75mh9m5nqiakzyhn2ynsxmbq2rp45zf83nr6mm2h5q"; + rev = "9f8d7de3848e32c592b168f898f82ec4356128af"; + sha256 = "1xrwx75dq46snjsrrv0yh4p409w1blmqpw4i5vlxwi5vn29qpnvs"; }; meta.homepage = "https://github.com/crusoexia/vim-monokai/"; }; vim-monokai-pro = buildVimPluginFrom2Nix { pname = "vim-monokai-pro"; - version = "2020-05-07"; + version = "2020-10-02"; src = fetchFromGitHub { owner = "phanviet"; repo = "vim-monokai-pro"; - rev = "baf3046bb44cdffe3bf9a571b3ec24039e2c9f88"; - sha256 = "0rszkf070d8w94dhgjpsl1kyn19j7bqyz434qshz4j88jk7hap6h"; + rev = "05e534f9fea9a8e4cbf69a1523c785845deabe4e"; + sha256 = "0hf3iy2ydr6jpraf5zyqg2hl7ma5hn301jyxf6m9ffdsz7722jwm"; }; meta.homepage = "https://github.com/phanviet/vim-monokai-pro/"; }; @@ -5679,12 +5703,12 @@ let vim-ocaml = buildVimPluginFrom2Nix { pname = "vim-ocaml"; - version = "2020-09-14"; + version = "2020-10-11"; src = fetchFromGitHub { owner = "ocaml"; repo = "vim-ocaml"; - rev = "acee4ad4d65ddaf81895cca9e28baea4c13fa76a"; - sha256 = "0rrjcc5i1isia74nrrik5avkd0casbjhgyqb2ph2176gywz6h5y5"; + rev = "023a2a464e7a096779d3e541ee7d1dbe61148f6a"; + sha256 = "0wj945n3da9bzcj5n8002m4vrzv9cgk6sqcc7nyc1x34y9452z94"; }; meta.homepage = "https://github.com/ocaml/vim-ocaml/"; }; @@ -5739,12 +5763,12 @@ let vim-orgmode = buildVimPluginFrom2Nix { pname = "vim-orgmode"; - version = "2020-07-14"; + version = "2020-10-15"; src = fetchFromGitHub { owner = "jceb"; repo = "vim-orgmode"; - rev = "ad5f154a5bd9daffb7cf50719f0cc945f445af85"; - sha256 = "09x3x53vf2fir9jhi38v9sai7dx5i40ylx1yk42459bgig2vv1aa"; + rev = "b7bce17005cf114b0961d0b5576bf584a2574774"; + sha256 = "1kpg858qazv465k2w8343hkiz9lzclkcx91vcysip77diandn523"; }; meta.homepage = "https://github.com/jceb/vim-orgmode/"; }; @@ -5823,12 +5847,12 @@ let vim-pandoc-syntax = buildVimPluginFrom2Nix { pname = "vim-pandoc-syntax"; - version = "2020-08-10"; + version = "2020-10-24"; src = fetchFromGitHub { owner = "vim-pandoc"; repo = "vim-pandoc-syntax"; - rev = "59680708cdc98c3fae9acb6c261374bfd808335a"; - sha256 = "1yiczv4l2rg8wva2gbjvv7k9s6y9p0gwmlazdd9rnq28nhmxx3gv"; + rev = "2521e2e9b99a3550e1a20f24e09fa46679cbbbc7"; + sha256 = "02023bnvc9m98m45krld1b7gy13z335jv88fx4ybz019wc0mv35g"; }; meta.homepage = "https://github.com/vim-pandoc/vim-pandoc-syntax/"; }; @@ -5919,12 +5943,12 @@ let vim-plug = buildVimPluginFrom2Nix { pname = "vim-plug"; - version = "2020-09-08"; + version = "2020-10-22"; src = fetchFromGitHub { owner = "junegunn"; repo = "vim-plug"; - rev = "d16273e07231260e02412625f98651bc6ceebb56"; - sha256 = "0ckglxbnxq50jfigbmgjwaj2vj1g6xjwyipzxbph2b64yi2kklg5"; + rev = "ab940f624ae1df24605a8ff1bf427de7a76e5911"; + sha256 = "0v985v9a7kspchfvr2lvj5jqnlkg05agyay0wn0c6mg5bf2mw8q1"; }; meta.homepage = "https://github.com/junegunn/vim-plug/"; }; @@ -5943,12 +5967,12 @@ let vim-polyglot = buildVimPluginFrom2Nix { pname = "vim-polyglot"; - version = "2020-09-30"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "sheerun"; repo = "vim-polyglot"; - rev = "3ad297db5c1cf94660e4297ffa81b6281eab2884"; - sha256 = "0v7dzidqp24shm00w79xvg912qvdbsn2119j5gw70q1xjsi3sxav"; + rev = "05e21a9e252b283b2d71568ad3b671d7f28fe0bc"; + sha256 = "039wha51p2zwnjyjm0qxca63dgrp54l43ba74639gf0hp5h2wvfa"; }; meta.homepage = "https://github.com/sheerun/vim-polyglot/"; }; @@ -5991,12 +6015,12 @@ let vim-prosession = buildVimPluginFrom2Nix { pname = "vim-prosession"; - version = "2020-04-20"; + version = "2020-10-12"; src = fetchFromGitHub { owner = "dhruvasagar"; repo = "vim-prosession"; - rev = "95f78bd0f719fee96569f30fd5f4199c4461efb7"; - sha256 = "1ix04f3nxxmxd36kzalx0hrbks30v44ydz15apvl1h8l8663hda2"; + rev = "e735468710a5cd6037b6d4c0e4c8c2bc1353cf4b"; + sha256 = "0ava297hpm1cf8j18ypfrziwavqcv982hisvh1d8yjxal521pam1"; }; meta.homepage = "https://github.com/dhruvasagar/vim-prosession/"; }; @@ -6063,12 +6087,12 @@ let vim-qml = buildVimPluginFrom2Nix { pname = "vim-qml"; - version = "2019-12-20"; + version = "2020-10-24"; src = fetchFromGitHub { owner = "peterhoeg"; repo = "vim-qml"; - rev = "b04de1dadb7dfe372d22f7529a001af1b5e19f4f"; - sha256 = "1pxl70l0g4i8cbnpjhb9pyjhz982flkrng07y9xwzbdl2jx42i8s"; + rev = "77853c3ff98a868dcbbdfa4eb8f0e659b57993ff"; + sha256 = "14v90gchmpl1nkiic3f3kiz8akbw2wmpish794xakvz63iys703y"; }; meta.homepage = "https://github.com/peterhoeg/vim-qml/"; }; @@ -6087,12 +6111,12 @@ let vim-racer = buildVimPluginFrom2Nix { pname = "vim-racer"; - version = "2020-06-18"; + version = "2020-10-21"; src = fetchFromGitHub { owner = "racer-rust"; repo = "vim-racer"; - rev = "250e9fd496edde1516a5e68e9837ccf5e46cc895"; - sha256 = "1ar5wv776xslxrs2mmxr5kzz5pp4a4v8jydh9s6cqbfzglgr9kw5"; + rev = "4c8b8843de2bbf4a6b44a570f284534d5e75a989"; + sha256 = "1rkp75q0m8w9br35nngdbdlvfpha4x4yilaff40d62mcmb8xmhvj"; }; meta.homepage = "https://github.com/racer-rust/vim-racer/"; }; @@ -6339,12 +6363,12 @@ let vim-slime = buildVimPluginFrom2Nix { pname = "vim-slime"; - version = "2020-08-06"; + version = "2020-10-25"; src = fetchFromGitHub { owner = "jpalardy"; repo = "vim-slime"; - rev = "db486eaa39f14d130ddf6338aaa02127aa04b272"; - sha256 = "1x9vflsbdl1b03irkvfpapb0c4mw9lymfghcjy1wxjl2vpq630ia"; + rev = "4e319f2bde4e65ab2f21719cb5c0371221d19f51"; + sha256 = "01zjg2r103p543lcyrkssw6agrj58m1ymqhf7fbzhpra9ykdpsp6"; }; meta.homepage = "https://github.com/jpalardy/vim-slime/"; }; @@ -6399,24 +6423,24 @@ let vim-snipmate = buildVimPluginFrom2Nix { pname = "vim-snipmate"; - version = "2020-03-27"; + version = "2020-10-02"; src = fetchFromGitHub { owner = "garbas"; repo = "vim-snipmate"; - rev = "b80367fefc2188c9d6c4a9eb1830360b09e13476"; - sha256 = "0qq81hcavmaq76r38qfy1cxlmhj0aswbd41k2k9fyzilzq4r0bg8"; + rev = "68eebf9dabe5c1d1964e78dda188765f224bab34"; + sha256 = "1mxa373ry17zwszd089k99lbgr5pg46x5dlahpk0l68ksxpkbxir"; }; meta.homepage = "https://github.com/garbas/vim-snipmate/"; }; vim-snippets = buildVimPluginFrom2Nix { pname = "vim-snippets"; - version = "2020-10-01"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "honza"; repo = "vim-snippets"; - rev = "78a9ca0fa3e4d16b73f5f642ec56298b7fec7803"; - sha256 = "1k4rvkbfixp1yi5gz8kffnq7k7xd7bc5cb521jb6h0z6f74qrk70"; + rev = "d48c1e2dae8f40391b2bd4b4daf97527c4d75130"; + sha256 = "04dmcikkxlx2vm3lnhw94nw59wi4x1yf27k6j85a0lifwgra1a2m"; }; meta.homepage = "https://github.com/honza/vim-snippets/"; }; @@ -6483,12 +6507,12 @@ let vim-startify = buildVimPluginFrom2Nix { pname = "vim-startify"; - version = "2020-04-18"; + version = "2020-10-07"; src = fetchFromGitHub { owner = "mhinz"; repo = "vim-startify"; - rev = "593388d3dbe7bfdcc06a714550d3253442b2fc65"; - sha256 = "1k0sgx8r3gi3k4ira1ilvc1jmj0k5apiv7x71dqnh41gfrz1i12h"; + rev = "f2fc11844b234479d37bef37faa7ceb2aade788b"; + sha256 = "18n16hpkqadq18gpgppbr4s516jpc8qwd357vb2c7069q79kfx39"; }; meta.homepage = "https://github.com/mhinz/vim-startify/"; }; @@ -6567,12 +6591,12 @@ let vim-table-mode = buildVimPluginFrom2Nix { pname = "vim-table-mode"; - version = "2020-08-19"; + version = "2020-10-13"; src = fetchFromGitHub { owner = "dhruvasagar"; repo = "vim-table-mode"; - rev = "3476c4e517aa86bc131c707d32f2e508bd5be468"; - sha256 = "0vglazxlsg7ai4c5znxaddpjnfhz6a9slzs0kzzqvmhd3xr7vfg1"; + rev = "659ba4f39caa38e6913f88c9f4369c00e852160f"; + sha256 = "0fqj9l7i052mvw0wlyg30bmihzi937svk3ggsp0rc9wlr30frg2p"; }; meta.homepage = "https://github.com/dhruvasagar/vim-table-mode/"; }; @@ -6603,12 +6627,12 @@ let vim-terraform = buildVimPluginFrom2Nix { pname = "vim-terraform"; - version = "2020-09-23"; + version = "2020-10-10"; src = fetchFromGitHub { owner = "hashivim"; repo = "vim-terraform"; - rev = "f77a07617a649684148de97e5a9115e659166f6a"; - sha256 = "01rgbiddczyx56b6fha6jgxmr0kfhjz8d9rmbfnqlnynmy5545ic"; + rev = "6fd491d6a2ae40fef3aa6c414e096ce07664f030"; + sha256 = "0iczgn4ifhlzszgwv1w43w7qzrf1pp8zpfv4vdpm82mli58xlnhc"; }; meta.homepage = "https://github.com/hashivim/vim-terraform/"; }; @@ -6628,12 +6652,12 @@ let vim-test = buildVimPluginFrom2Nix { pname = "vim-test"; - version = "2020-09-29"; + version = "2020-10-22"; src = fetchFromGitHub { owner = "vim-test"; repo = "vim-test"; - rev = "fd9fb9b29c265d86fa30c672df1fea9a5a757860"; - sha256 = "0qhjmpamhk89h9hjzwc9j88yngf945fk5jd9015qajfk0l15k8x9"; + rev = "58dde91c0477fa58d18d5c0fde10b2a60a526b0f"; + sha256 = "1l23fb1q86ikrz8dg4n23l7bqp1xa68fwdhv0j0by73ymcp4zn1s"; }; meta.homepage = "https://github.com/vim-test/vim-test/"; }; @@ -6748,12 +6772,12 @@ let vim-tmux-focus-events = buildVimPluginFrom2Nix { pname = "vim-tmux-focus-events"; - version = "2019-12-09"; + version = "2020-10-05"; src = fetchFromGitHub { owner = "tmux-plugins"; repo = "vim-tmux-focus-events"; - rev = "e80960715c09aef8ab9204848ed1683805a93a33"; - sha256 = "0ds6qw2i1r67jhxh9ff36al45bafsmbxxdc127l6iy2vl5wj0d3d"; + rev = "a568192ca0de4ca0bd7b3cd0249aad491625c941"; + sha256 = "130l73v18md95djkc4s9d0fr018f8f183sjcgy7dgldwdaxlqdi1"; }; meta.homepage = "https://github.com/tmux-plugins/vim-tmux-focus-events/"; }; @@ -6832,12 +6856,12 @@ let vim-twiggy = buildVimPluginFrom2Nix { pname = "vim-twiggy"; - version = "2020-09-07"; + version = "2020-10-06"; src = fetchFromGitHub { owner = "sodapopcan"; repo = "vim-twiggy"; - rev = "c0edb8a684f624d6f177c2625fc9db617a3d539f"; - sha256 = "13fm3mgnvbhm93cn0jglnqm8hhmwvh5xg088pn5wmwrn9bjj00gz"; + rev = "efe1d29979bd2b65d22cf49f08524d6e27e5244b"; + sha256 = "0xqn39apmy6d8vqzbzvv6ic7p2pd5lpdgd4jay1afg2q73yi1rbv"; }; meta.homepage = "https://github.com/sodapopcan/vim-twiggy/"; }; @@ -6916,24 +6940,24 @@ let vim-vsnip = buildVimPluginFrom2Nix { pname = "vim-vsnip"; - version = "2020-09-23"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "hrsh7th"; repo = "vim-vsnip"; - rev = "ec25ffcdf793dd5af6d73ce75d21709a60a4689f"; - sha256 = "07gkygdspxn0fwlgcyhli85nlgg8g4y4v991n80vmk0rhsxqdh90"; + rev = "562cabf644314c97224a025ad2594a47966e6207"; + sha256 = "1i1b8la3w9x8lay63kqx958k4csxnqmdw9bfmhyh2vf1p0cdqv6l"; }; meta.homepage = "https://github.com/hrsh7th/vim-vsnip/"; }; vim-vsnip-integ = buildVimPluginFrom2Nix { pname = "vim-vsnip-integ"; - version = "2020-08-19"; + version = "2020-10-25"; src = fetchFromGitHub { owner = "hrsh7th"; repo = "vim-vsnip-integ"; - rev = "4a076bea73e307738ac5d08f60a0936cab391efd"; - sha256 = "1jx6ijmj48ffymfn20d0syp1ywv19gmjvf3hb6rdwsk421y58chv"; + rev = "383573b9b07fd37caf98247dfdbb1d4711eecee9"; + sha256 = "1kavjyr53cbg630snri2x94f7h80p2vl6vlskqfwi3djfdvn68x6"; }; meta.homepage = "https://github.com/hrsh7th/vim-vsnip-integ/"; }; @@ -6976,24 +7000,24 @@ let vim-which-key = buildVimPluginFrom2Nix { pname = "vim-which-key"; - version = "2020-09-29"; + version = "2020-10-02"; src = fetchFromGitHub { owner = "liuchengxu"; repo = "vim-which-key"; - rev = "641df563764d68454ab752a6815d783c452274be"; - sha256 = "00wn2jvjazkjagf4bfpz3fh7xh2w495qn8kilz89lab6pvzx79rp"; + rev = "30c0810b012a7acdccc6b72f0e99c0388986844f"; + sha256 = "18rflksd58mwkq0lc64frfimj1l1k8cc0l45jpv0z4w118v92jyv"; }; meta.homepage = "https://github.com/liuchengxu/vim-which-key/"; }; vim-wordy = buildVimPluginFrom2Nix { pname = "vim-wordy"; - version = "2019-11-22"; + version = "2020-10-24"; src = fetchFromGitHub { owner = "reedes"; repo = "vim-wordy"; - rev = "f0391713fa83771d64b065868331ef4754d861ed"; - sha256 = "0v5cl3rrg2vrdb2al67hbh730rw8m2zvhb1vippv64k65mknkgp5"; + rev = "667426a0171787b2620dffa5b2d7c01c9040237f"; + sha256 = "1lcrisv2wcd8iw76prql03wd11jgmknm3rvbcw7vv4v5r2s9rv5z"; }; meta.homepage = "https://github.com/reedes/vim-wordy/"; }; @@ -7012,12 +7036,12 @@ let vim-xkbswitch = buildVimPluginFrom2Nix { pname = "vim-xkbswitch"; - version = "2020-05-22"; + version = "2020-10-07"; src = fetchFromGitHub { owner = "lyokha"; repo = "vim-xkbswitch"; - rev = "f54fd6a7357d43a8773313504da72d1bd96d6f1a"; - sha256 = "0542prcclaw6s4f6dlp0ywz5zp10brb7br7hx4lhhizslcakg09v"; + rev = "8fb3d07e5c9809f292dddb034db2c02d649b29fb"; + sha256 = "08j0r68ps4jisgbx6lg2vz3wxyx7yzrklsi112bqjxizxjpjb132"; }; meta.homepage = "https://github.com/lyokha/vim-xkbswitch/"; }; @@ -7120,12 +7144,12 @@ let vimoutliner = buildVimPluginFrom2Nix { pname = "vimoutliner"; - version = "2020-02-09"; + version = "2020-10-26"; src = fetchFromGitHub { owner = "vimoutliner"; repo = "vimoutliner"; - rev = "1031b16e6b0069229fe0f33a66489f81174fa4d9"; - sha256 = "1gn21b8yr0bjg0y1nidk13zcl4f6z8wkrxncgkd1hlc14d99jkg0"; + rev = "d198aa72c70270f1330f4237bbf853efaaa79723"; + sha256 = "05wcqs36qn8f3vcy9xi2cf0yyp7yzawlxqvpjhbad6lm52vzsabs"; }; meta.homepage = "https://github.com/vimoutliner/vimoutliner/"; }; @@ -7180,12 +7204,12 @@ let vimspector = buildVimPluginFrom2Nix { pname = "vimspector"; - version = "2020-09-27"; + version = "2020-10-23"; src = fetchFromGitHub { owner = "puremourning"; repo = "vimspector"; - rev = "692a0d8d39bfbd048119df9644e4b2fab2e01abe"; - sha256 = "1msf62l8bvcgk0g5rknfy44kjfh0r081y78xi15xyyc1mibpvx06"; + rev = "7b048367f7d4921e4eeea1bb82e6f368b418d89a"; + sha256 = "0n1kqiki5gag7nd5c5gmnv6czv90kzsfndbb92n3wzvwxhpf1ff6"; fetchSubmodules = true; }; meta.homepage = "https://github.com/puremourning/vimspector/"; @@ -7193,12 +7217,12 @@ let vimtex = buildVimPluginFrom2Nix { pname = "vimtex"; - version = "2020-09-29"; + version = "2020-10-24"; src = fetchFromGitHub { owner = "lervag"; repo = "vimtex"; - rev = "bfdaec19bf236fad1c9c192a0cf43e299cf1682a"; - sha256 = "12z29gs9h81rv0w3zm49r4b4s3bj0gzqxl5x1gyjk7pijvnnxfbg"; + rev = "eb7d89178319fd21601d2fe057e3f7cae2130b74"; + sha256 = "14gj3n54q475cw9j6h12ir3lynn048829zjrb6nyhrzplikhpc9n"; }; meta.homepage = "https://github.com/lervag/vimtex/"; }; @@ -7241,12 +7265,12 @@ let vista-vim = buildVimPluginFrom2Nix { pname = "vista-vim"; - version = "2020-09-29"; + version = "2020-10-10"; src = fetchFromGitHub { owner = "liuchengxu"; repo = "vista.vim"; - rev = "bcb50336188074c9cfc1aad4b463f4c0e698a68c"; - sha256 = "0kckpj2v0yabp7hz9a6qdh8vspdn6fldk2q1pygyn35bii8x86dh"; + rev = "27889ff58d4340167bb8dd4abbe9ff4a8869da8f"; + sha256 = "1asc8fqyv6rfmdd0g5n78mzzssn7rcanzy2d30gddgfa3gr65yms"; }; meta.homepage = "https://github.com/liuchengxu/vista.vim/"; }; @@ -7361,12 +7385,12 @@ let yats-vim = buildVimPluginFrom2Nix { pname = "yats-vim"; - version = "2020-09-27"; + version = "2020-10-27"; src = fetchFromGitHub { owner = "HerringtonDarkholme"; repo = "yats.vim"; - rev = "7c904cf443f5fd4900e1b4aad6dba6af96b4a395"; - sha256 = "0ap2jh0j5ssv1mv51syvw2y7352ydf4qmk3s7f2rlcq3nba3y6rr"; + rev = "0635a855ff1c56073d5e372001a3843e15c8aedb"; + sha256 = "0883lz5sv4w38awwxgff8lx2n1fcy6lw6dd1f8zkambvd7n4v19l"; fetchSubmodules = true; }; meta.homepage = "https://github.com/HerringtonDarkholme/yats.vim/"; @@ -7374,12 +7398,12 @@ let YouCompleteMe = buildVimPluginFrom2Nix { pname = "YouCompleteMe"; - version = "2020-09-30"; + version = "2020-10-25"; src = fetchFromGitHub { owner = "ycm-core"; repo = "YouCompleteMe"; - rev = "12376a7b179939612f834735f50015436e30c6e7"; - sha256 = "0caf6xd9gxx136gi92hnw0myfil74wh3qg264ykfd0km34lysf3h"; + rev = "dd61ad7a101e0c0467f2c9942c7cbd3f31f6a06b"; + sha256 = "0xjy6zpz02db5fcwwpdw3kp7kjgrvhlm3bk62syn0hxjghgd7pyb"; fetchSubmodules = true; }; meta.homepage = "https://github.com/ycm-core/YouCompleteMe/"; @@ -7423,24 +7447,24 @@ let zig-vim = buildVimPluginFrom2Nix { pname = "zig-vim"; - version = "2020-09-20"; + version = "2020-10-09"; src = fetchFromGitHub { owner = "ziglang"; repo = "zig.vim"; - rev = "9979e503e675b432c55a83891238c631f7f16a01"; - sha256 = "05cmc3173yscmk2r976280z53z3z7v8ysyy4i0z4v998l804hq5c"; + rev = "fa5f6d7c5be47bd32dcc69ccf980fc585575cc38"; + sha256 = "0szrnp27ccl93fbn1j9ybsld1l6j3xdrnx6dsf01gdxidm3w60f3"; }; meta.homepage = "https://github.com/ziglang/zig.vim/"; }; zoomwintab-vim = buildVimPluginFrom2Nix { pname = "zoomwintab-vim"; - version = "2020-04-10"; + version = "2020-10-13"; src = fetchFromGitHub { owner = "troydm"; repo = "zoomwintab.vim"; - rev = "63a70b9e12617d6565a0489c68efe44708d19cf8"; - sha256 = "1dsi2d6wrv5x6w2hrrjzqivsspxxav0hdj0pymml6gry2jcbj4s9"; + rev = "3b33368ed2ff6138d07f7ee148306cce7d7f6b7c"; + sha256 = "0jx6860ajw50fn0l5p3dm3fcfwklqs1lf22yyrb09iljavixj777"; }; meta.homepage = "https://github.com/troydm/zoomwintab.vim/"; }; diff --git a/pkgs/misc/vim-plugins/overrides.nix b/pkgs/misc/vim-plugins/overrides.nix index a7fdc8b5a13..88e535da5b0 100644 --- a/pkgs/misc/vim-plugins/overrides.nix +++ b/pkgs/misc/vim-plugins/overrides.nix @@ -60,18 +60,19 @@ self: super: { }; LanguageClient-neovim = let - version = "0.1.158"; + version = "0.1.160"; LanguageClient-neovim-src = fetchFromGitHub { owner = "autozimu"; repo = "LanguageClient-neovim"; rev = version; - sha256 = "14xggdgp5qw4yj4gdsgr8s2nxm098m88q8rx6fzd2j20njv308ki"; + sha256 = "143cifahav1pfmpx3j1ihx433jrwxf6z27s0wxndgjkd2plkks58"; }; LanguageClient-neovim-bin = rustPlatform.buildRustPackage { - name = "LanguageClient-neovim-bin"; + pname = "LanguageClient-neovim-bin"; + inherit version; src = LanguageClient-neovim-src; - cargoSha256 = "0nin1gydf6q4mmxljm2xbd1jfl3wpzx3pvlqwspahblv9j2bf5ck"; + cargoSha256 = "0mf94j85awdcqa6cyb89bipny9xg13ldkznjf002fq747f55my2a"; buildInputs = stdenv.lib.optionals stdenv.isDarwin [ CoreServices ]; # FIXME: Use impure version of CoreFoundation because of missing symbols. @@ -603,6 +604,8 @@ self: super: { in '' ln -s ${maple-bin}/bin/maple $target/bin/maple ''; + + meta.platforms = stdenv.lib.platforms.all; }); completion-tabnine = super.completion-tabnine.overrideAttrs(old: { @@ -618,6 +621,7 @@ self: super: { nodePackageNames = [ "coc-go" "coc-css" + "coc-diagnostic" "coc-emmet" "coc-eslint" "coc-git" diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names index 2b1d6337f66..de4cd959dee 100644 --- a/pkgs/misc/vim-plugins/vim-plugin-names +++ b/pkgs/misc/vim-plugins/vim-plugin-names @@ -98,6 +98,7 @@ elmcast/elm-vim elzr/vim-json embear/vim-localvimrc enomsg/vim-haskellConcealPlus +enricobacis/vim-airline-clock ensime/ensime-vim ervandew/supertab esneider/YUNOcommit.vim @@ -369,6 +370,8 @@ numirias/semshi nvie/vim-flake8 nvim-lua/completion-nvim nvim-lua/diagnostic-nvim +nvim-lua/lsp_extensions.nvim +nvim-lua/telescope.nvim nvim-treesitter/completion-treesitter nvim-treesitter/nvim-treesitter ocaml/vim-ocaml @@ -494,7 +497,6 @@ thirtythreeforty/lessspace.vim thosakwe/vim-flutter tiagofumo/vim-nerdtree-syntax-highlight tikhomirov/vim-glsl -tjdevries/lsp_extensions.nvim tmhedberg/SimpylFold tmsvg/pear-tree tmux-plugins/vim-tmux diff --git a/pkgs/misc/vim-plugins/vim-utils.nix b/pkgs/misc/vim-plugins/vim-utils.nix index 5e1703c8cc3..ee77599a3ba 100644 --- a/pkgs/misc/vim-plugins/vim-utils.nix +++ b/pkgs/misc/vim-plugins/vim-utils.nix @@ -183,7 +183,7 @@ let rtpPath = "share/vim-plugins"; - vimrcFile = { + vimrcContent = { packages ? null, vam ? null, pathogen ? null, @@ -338,7 +338,7 @@ let filetype indent plugin on | syn on ''); - in writeText "vimrc" '' + in '' " configuration generated by NIX set nocompatible @@ -351,11 +351,13 @@ let ${customRC} ''; + vimrcFile = settings: writeText "vimrc" (vimrcContent settings); in rec { inherit vimrcFile; + inherit vimrcContent; # shell script with custom name passing [-u vimrc] [-U gvimrc] to vim vimWithRC = { diff --git a/pkgs/misc/vscode-extensions/default.nix b/pkgs/misc/vscode-extensions/default.nix index 90ab030263c..53796981e59 100644 --- a/pkgs/misc/vscode-extensions/default.nix +++ b/pkgs/misc/vscode-extensions/default.nix @@ -10,6 +10,7 @@ in # So an extension's attribute name should be of the form: # "${mktplcRef.publisher}.${mktplcRef.name}". # +stdenv.lib.mapAttrs (_n: stdenv.lib.recurseIntoAttrs) { alanz.vscode-hie-server = buildVscodeMarketplaceExtension { @@ -48,6 +49,26 @@ in }; }; + dhall.dhall-lang = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "dhall-lang"; + publisher = "dhall"; + version = "0.0.4"; + sha256 = "0sa04srhqmngmw71slnrapi2xay0arj42j4gkan8i11n7bfi1xpf"; + }; + meta = { license = stdenv.lib.licenses.mit; }; + }; + + dhall.vscode-dhall-lsp-server = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "vscode-dhall-lsp-server"; + publisher = "dhall"; + version = "0.0.4"; + sha256 = "1zin7s827bpf9yvzpxpr5n6mv0b5rhh3civsqzmj52mdq365d2js"; + }; + meta = { license = stdenv.lib.licenses.mit; }; + }; + formulahendry.auto-close-tag = buildVscodeMarketplaceExtension { mktplcRef = { name = "auto-close-tag"; @@ -194,6 +215,8 @@ in lldb = llvmPackages_latest.lldb; }; + ms-vsliveshare.vsliveshare = callPackage ./ms-vsliveshare-vsliveshare {}; + vscodevim.vim = buildVscodeMarketplaceExtension { mktplcRef = { name = "vim"; diff --git a/pkgs/misc/vscode-extensions/ms-vsliveshare-vsliveshare/default.nix b/pkgs/misc/vscode-extensions/ms-vsliveshare-vsliveshare/default.nix new file mode 100644 index 00000000000..446fedeffec --- /dev/null +++ b/pkgs/misc/vscode-extensions/ms-vsliveshare-vsliveshare/default.nix @@ -0,0 +1,138 @@ +# Baseed on previous attempts: +# - +# - +{ lib, gccStdenv, vscode-utils, autoPatchelfHook, bash, file, makeWrapper, dotnet-sdk_3 +, curl, gcc, icu, libkrb5, libsecret, libunwind, libX11, lttng-ust, openssl, utillinux, zlib +, desktop-file-utils, xprop +}: + +with lib; + +let + # https://docs.microsoft.com/en-us/visualstudio/liveshare/reference/linux#install-prerequisites-manually + libs = [ + # .NET Core + openssl + libkrb5 + zlib + icu + + # Credential Storage + libsecret + + # NodeJS + libX11 + + # https://github.com/flathub/com.visualstudio.code.oss/issues/11#issuecomment-392709170 + libunwind + lttng-ust + curl + + # General + gcc.cc.lib + utillinux # libuuid + ]; + +in ((vscode-utils.override { stdenv = gccStdenv; }).buildVscodeMarketplaceExtension { + mktplcRef = { + name = "vsliveshare"; + publisher = "ms-vsliveshare"; + version = "1.0.2902"; + sha256 = "0fx2vi0wxamcwqcgcx7wpg8hi7f1c2pibrmd2qy2whilpsv3gzmb"; + }; +}).overrideAttrs(attrs: { + buildInputs = attrs.buildInputs ++ libs ++ [ autoPatchelfHook bash file makeWrapper ]; + + # Using a patch file won't work, because the file changes too often, causing the patch to fail on most updates. + # Rather than patching the calls to functions, we modify the functions to return what we want, + # which is less likely to break in the future. + postPatch = '' + sed -i \ + -e 's/updateExecutablePermissionsAsync() {/& return;/' \ + -e 's/isInstallCorrupt(traceSource, manifest) {/& return false;/' \ + out/prod/extension-prod.js + + declare ext_unique_id + ext_unique_id="$(basename "$out")" + + # Fix extension attempting to write to 'modifiedInternalSettings.json'. + # Move this write to the tmp directory indexed by the nix store basename. + sed -i \ + -E -e $'s/path\.resolve\(constants_1\.EXTENSION_ROOT_PATH, \'\.\/modifiedInternalSettings\.json\'\)/path.join\(os.tmpdir(), "'$ext_unique_id'" + "-modifiedInternalSettings.json"\)/g' \ + out/prod/extension-prod.js + + # Fix extension attempting to write to 'vsls-agent.lock'. + # Move this write to the tmp directory indexed by the nix store basename. + sed -i \ + -E -e $'s/(Agent_1.getAgentPath\(\) \+ \'.lock\')/path.join\(os.tmpdir(), "'$ext_unique_id'" + "-vsls-agent.lock"\)/g' \ + out/prod/extension-prod.js + + # TODO: Under 'node_modules/@vsliveshare/vscode-launcher-linux' need to hardcode path to 'desktop-file-install' + # 'update-desktop-database' and 'xprop'. Might want to wrap the script instead. + ''; + + # Support for the `postInstall` hook was added only in nixos-20.03, + # so for backwards compatibility reasons lets not use it yet. + installPhase = attrs.installPhase + '' + # Support both the new and old directory structure of vscode extensions. + if [[ -d $out/ms-vsliveshare.vsliveshare ]]; then + cd $out/ms-vsliveshare.vsliveshare + elif [[ -d $out/share/vscode/extensions/ms-vsliveshare.vsliveshare ]]; then + cd $out/share/vscode/extensions/ms-vsliveshare.vsliveshare + else + echo "Could not find extension directory 'ms-vsliveshare.vsliveshare'." >&2 + exit 1 + fi + + bash -s < maloader != null; -let - baseParams = rec { - name = "${targetPrefix}cctools-port"; - version = "927.0.2"; +stdenv.mkDerivation { + pname = "${targetPrefix}cctools-port"; + version = "949.0.1"; - src = fetchFromGitHub { - owner = "tpoechtrager"; - repo = "cctools-port"; - rev = "8239a5211bcf07d6b9d359782e1a889ec1d7cce5"; - sha256 = "0h8b1my0wf1jyjq63wbiqkl2clgxsf87f6i4fjhqs431fzlq8sac"; - }; + src = fetchFromGitHub { + owner = "tpoechtrager"; + repo = "cctools-port"; + rev = "43f32a4c61b5ba7fde011e816136c550b1b3146f"; + sha256 = "10yc5smiczzm62q6ijqccc58bwmfhc897f3bwa5i9j98csqsjj0k"; + }; - outputs = [ "out" "dev" "man" ]; + outputs = [ "out" "dev" "man" ]; - nativeBuildInputs = [ autoconf automake libtool autoreconfHook installShellFiles ]; - buildInputs = [ libuuid ] - ++ stdenv.lib.optionals stdenv.isDarwin [ libcxxabi libobjc ] - ++ stdenv.lib.optional enableTapiSupport libtapi; + nativeBuildInputs = [ autoconf automake libtool autoreconfHook installShellFiles ]; + buildInputs = [ libuuid ] + ++ stdenv.lib.optionals stdenv.isDarwin [ libcxxabi libobjc ] + ++ stdenv.lib.optional enableTapiSupport libtapi; - patches = [ ./ld-ignore-rpath-link.patch ./ld-rpath-nonfinal.patch ]; + patches = [ ./ld-ignore-rpath-link.patch ./ld-rpath-nonfinal.patch ]; - __propagatedImpureHostDeps = [ - # As far as I can tell, otool from cctools is the only thing that depends on these two, and we should fix them - "/usr/lib/libobjc.A.dylib" - "/usr/lib/libobjc.dylib" + __propagatedImpureHostDeps = [ + # As far as I can tell, otool from cctools is the only thing that depends on these two, and we should fix them + "/usr/lib/libobjc.A.dylib" + "/usr/lib/libobjc.dylib" + ]; + + enableParallelBuilding = true; + + # TODO(@Ericson2314): Always pass "--target" and always targetPrefix. + configurePlatforms = [ "build" "host" ] + ++ stdenv.lib.optional (stdenv.targetPlatform != stdenv.hostPlatform) "target"; + configureFlags = [ "--disable-clang-as" ] + ++ stdenv.lib.optionals enableTapiSupport [ + "--enable-tapi-support" + "--with-libtapi=${libtapi}" ]; - enableParallelBuilding = true; + postPatch = stdenv.lib.optionalString stdenv.hostPlatform.isDarwin '' + substituteInPlace cctools/Makefile.am --replace libobjc2 "" + '' + '' + sed -i -e 's/addStandardLibraryDirectories = true/addStandardLibraryDirectories = false/' cctools/ld64/src/ld/Options.cpp - # TODO(@Ericson2314): Always pass "--target" and always targetPrefix. - configurePlatforms = [ "build" "host" ] - ++ stdenv.lib.optional (stdenv.targetPlatform != stdenv.hostPlatform) "target"; - configureFlags = [ "--disable-clang-as" ] - ++ stdenv.lib.optionals enableTapiSupport [ - "--enable-tapi-support" - "--with-libtapi=${libtapi}" - ]; + # FIXME: there are far more absolute path references that I don't want to fix right now + substituteInPlace cctools/configure.ac \ + --replace "-isystem /usr/local/include -isystem /usr/pkg/include" "" \ + --replace "-L/usr/local/lib" "" \ - postPatch = stdenv.lib.optionalString stdenv.hostPlatform.isDarwin '' - substituteInPlace cctools/Makefile.am --replace libobjc2 "" - '' + '' - sed -i -e 's/addStandardLibraryDirectories = true/addStandardLibraryDirectories = false/' cctools/ld64/src/ld/Options.cpp + substituteInPlace cctools/include/Makefile \ + --replace "/bin/" "" - # FIXME: there are far more absolute path references that I don't want to fix right now - substituteInPlace cctools/configure.ac \ - --replace "-isystem /usr/local/include -isystem /usr/pkg/include" "" \ - --replace "-L/usr/local/lib" "" \ + patchShebangs tools + sed -i -e 's/which/type -P/' tools/*.sh - substituteInPlace cctools/include/Makefile \ - --replace "/bin/" "" + # Workaround for https://www.sourceware.org/bugzilla/show_bug.cgi?id=11157 + cat > cctools/include/unistd.h < cctools/include/unistd.h <> $out/nix-support/libc-ldflags + '' + stdenv.lib.optionalString (sdk.platform == "iPhoneSimulator") '' + echo "-platform_version ios-sim ${minSdkVersion} ${sdk.version}" >> $out/nix-support/libc-ldflags + '' + stdenv.lib.optionalString (sdk.platform == "iPhoneOS") '' + echo "-platform_version ios ${minSdkVersion} ${sdk.version}" >> $out/nix-support/libc-ldflags ''; }; diff --git a/pkgs/os-specific/linux/alsa-utils/default.nix b/pkgs/os-specific/linux/alsa-utils/default.nix index f4670581dea..055927b7a31 100644 --- a/pkgs/os-specific/linux/alsa-utils/default.nix +++ b/pkgs/os-specific/linux/alsa-utils/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "alsa-utils"; - version = "1.2.3"; + version = "1.2.4"; src = fetchurl { url = "mirror://alsa/utils/${pname}-${version}.tar.bz2"; - sha256 = "1ai1z4kf91b1m3qrpwqkc1af5vm2fkdkknqv95xdwf19q94aw6gz"; + sha256 = "09m4dnn4kplawprd2bl15nwa0b4r1brab3x44ga7f1fyk7aw5zwq"; }; nativeBuildInputs = [ gettext ]; diff --git a/pkgs/os-specific/linux/android-udev-rules/default.nix b/pkgs/os-specific/linux/android-udev-rules/default.nix index 1cfa6b5856f..b6fe86d1b26 100644 --- a/pkgs/os-specific/linux/android-udev-rules/default.nix +++ b/pkgs/os-specific/linux/android-udev-rules/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "android-udev-rules"; - version = "20200410"; + version = "20201003"; src = fetchFromGitHub { owner = "M0Rf30"; repo = "android-udev-rules"; rev = version; - sha256 = "1ik9a0k9gkaw5a80m25pxx5yfiwq34ffb7iqhwicz4lwz5wsw8d3"; + sha256 = "07s5fdjbk5q4km6gz9759ngdavrqdgbnkd2b7z9z5lqw1q0b2422"; }; installPhase = '' diff --git a/pkgs/os-specific/linux/conntrack-tools/default.nix b/pkgs/os-specific/linux/conntrack-tools/default.nix index 80785015e76..43306e51166 100644 --- a/pkgs/os-specific/linux/conntrack-tools/default.nix +++ b/pkgs/os-specific/linux/conntrack-tools/default.nix @@ -1,6 +1,8 @@ { fetchurl, stdenv, flex, bison, pkgconfig, libmnl, libnfnetlink , libnetfilter_conntrack, libnetfilter_queue, libnetfilter_cttimeout -, libnetfilter_cthelper, systemd }: +, libnetfilter_cthelper, systemd +, libtirpc +}: stdenv.mkDerivation rec { pname = "conntrack-tools"; @@ -13,7 +15,7 @@ stdenv.mkDerivation rec { buildInputs = [ libmnl libnfnetlink libnetfilter_conntrack libnetfilter_queue - libnetfilter_cttimeout libnetfilter_cthelper systemd + libnetfilter_cttimeout libnetfilter_cthelper systemd libtirpc ]; nativeBuildInputs = [ flex bison pkgconfig ]; diff --git a/pkgs/os-specific/linux/cpuid/default.nix b/pkgs/os-specific/linux/cpuid/default.nix index df0017eadc1..3f57d0c7038 100644 --- a/pkgs/os-specific/linux/cpuid/default.nix +++ b/pkgs/os-specific/linux/cpuid/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { pname = "cpuid"; - version = "20200427"; + version = "20201006"; src = fetchurl { name = "${pname}-${version}.src.tar.gz"; url = "http://etallen.com/cpuid/${pname}-${version}.src.tar.gz"; - sha256 = "1m31238z2ya8f8pzpyklwp0ksf5xicqrw1z941hhhx913wzldaf1"; + sha256 = "19jnkh57f979b78ak5mpxmdvnkgc33r55cw9shgd2hc380b3zi8k"; }; # For pod2man during the build process. diff --git a/pkgs/os-specific/linux/cpuset/default.nix b/pkgs/os-specific/linux/cpuset/default.nix index 0a9b38f2888..90352a944d5 100644 --- a/pkgs/os-specific/linux/cpuset/default.nix +++ b/pkgs/os-specific/linux/cpuset/default.nix @@ -19,7 +19,7 @@ python2Packages.buildPythonApplication rec { }; meta = with stdenv.lib; { - description = "Cpuset is a Python application that forms a wrapper around the standard Linux filesystem calls to make using the cpusets facilities in the Linux kernel easier."; + description = "Python application that forms a wrapper around the standard Linux filesystem calls to make using the cpusets facilities in the Linux kernel easier"; homepage = "https://github.com/wykurz/cpuset"; license = licenses.gpl2; maintainers = with maintainers; [ wykurz ]; diff --git a/pkgs/os-specific/linux/cryptsetup/default.nix b/pkgs/os-specific/linux/cryptsetup/default.nix index caa22b4df3e..aa5c124ea60 100644 --- a/pkgs/os-specific/linux/cryptsetup/default.nix +++ b/pkgs/os-specific/linux/cryptsetup/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "cryptsetup"; - version = "2.3.3"; + version = "2.3.4"; outputs = [ "out" "dev" "man" ]; src = fetchurl { url = "mirror://kernel/linux/utils/cryptsetup/v2.3/${pname}-${version}.tar.xz"; - sha256 = "1pw2bq4nv2z3xyycckxkbp7dp9kkp2n6bspna3plryg277z4zjiv"; + sha256 = "0wrpz2fzbsszmsgxxbssxjgylpyiindh24z8g13m2fxmjsxyw5lx"; }; # Disable 4 test cases that fail in a sandbox diff --git a/pkgs/os-specific/linux/dpdk/default.nix b/pkgs/os-specific/linux/dpdk/default.nix index aacbc3cdfbe..efe578c596b 100644 --- a/pkgs/os-specific/linux/dpdk/default.nix +++ b/pkgs/os-specific/linux/dpdk/default.nix @@ -43,7 +43,7 @@ in stdenv.mkDerivation rec { mesonFlags = [ "-Denable_docs=true" - "-Denable_kmods=${if mod then "true" else "false"}" + "-Denable_kmods=${lib.boolToString mod}" ] ++ lib.optional (!shared) "-Ddefault_library=static" ++ lib.optional stdenv.isx86_64 "-Dmachine=nehalem" diff --git a/pkgs/os-specific/linux/dstat/default.nix b/pkgs/os-specific/linux/dstat/default.nix index 2e235e27f36..6d2d8eb75b0 100644 --- a/pkgs/os-specific/linux/dstat/default.nix +++ b/pkgs/os-specific/linux/dstat/default.nix @@ -12,6 +12,8 @@ python2Packages.buildPythonApplication rec { propagatedBuildInputs = with python2Packages; [ python-wifi ]; + patches = [ ./fix_pluginpath.patch ]; + makeFlags = [ "prefix=$(out)" ]; meta = with stdenv.lib; { diff --git a/pkgs/os-specific/linux/dstat/fix_pluginpath.patch b/pkgs/os-specific/linux/dstat/fix_pluginpath.patch new file mode 100644 index 00000000000..06d7793da47 --- /dev/null +++ b/pkgs/os-specific/linux/dstat/fix_pluginpath.patch @@ -0,0 +1,15 @@ +diff --git a/dstat b/dstat +index 3ac7087..c5f089d 100755 +--- a/dstat ++++ b/dstat +@@ -66,9 +66,7 @@ if sys.version_info < (2, 3): + + pluginpath = [ + os.path.expanduser('~/.dstat/'), # home + /.dstat/ +- os.path.abspath(os.path.dirname(sys.argv[0])) + '/plugins/', # binary path + /plugins/ +- '/usr/share/dstat/', +- '/usr/local/share/dstat/', ++ os.path.abspath(os.path.dirname(sys.argv[0])) + '/../share/dstat/', # binary path + /../share/dstat/ + ] + + class Options: diff --git a/pkgs/os-specific/linux/firmware/raspberrypi/default.nix b/pkgs/os-specific/linux/firmware/raspberrypi/default.nix index 6036eff2d98..70bcaa15d96 100644 --- a/pkgs/os-specific/linux/firmware/raspberrypi/default.nix +++ b/pkgs/os-specific/linux/firmware/raspberrypi/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "raspberrypi-firmware"; - version = "1.20200902"; + version = "1.20201022"; src = fetchFromGitHub { owner = "raspberrypi"; repo = "firmware"; rev = version; - sha256 = "1dj5vyhz2ljka7hwhl6s14hd017fspix1xp7zbm7lzdyys9jb9ni"; + sha256 = "0j5m50cmmr11m3h8kk89j1pqkdqr7mzdzg04ayiqvfhvy32qqlg8"; }; installPhase = '' diff --git a/pkgs/os-specific/linux/firmware/system76-firmware/default.nix b/pkgs/os-specific/linux/firmware/system76-firmware/default.nix index 6da1df98b25..f19af3d10fc 100644 --- a/pkgs/os-specific/linux/firmware/system76-firmware/default.nix +++ b/pkgs/os-specific/linux/firmware/system76-firmware/default.nix @@ -30,7 +30,7 @@ rustPlatform.buildRustPackage rec { ''; meta = { - description = "Tools for managing firmware updates for system76 devices."; + description = "Tools for managing firmware updates for system76 devices"; homepage = "https://github.com/pop-os/system76-firmware"; license = lib.licenses.gpl3; maintainers = [ lib.maintainers.shlevy ]; diff --git a/pkgs/os-specific/linux/hdparm/default.nix b/pkgs/os-specific/linux/hdparm/default.nix index 99464b67db1..8d3a967d683 100644 --- a/pkgs/os-specific/linux/hdparm/default.nix +++ b/pkgs/os-specific/linux/hdparm/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl }: stdenv.mkDerivation rec { - name = "hdparm-9.58"; + pname = "hdparm"; + version = "9.58"; src = fetchurl { - url = "mirror://sourceforge/hdparm/${name}.tar.gz"; + url = "mirror://sourceforge/hdparm/hdparm-${version}.tar.gz"; sha256 = "03z1qm8zbgpxagk3994lvp24yqsshjibkwg05v9p3q1w7y48xrws"; - }; preBuild = '' diff --git a/pkgs/os-specific/linux/intel-compute-runtime/default.nix b/pkgs/os-specific/linux/intel-compute-runtime/default.nix index bba3549daf6..e33a40e6a85 100644 --- a/pkgs/os-specific/linux/intel-compute-runtime/default.nix +++ b/pkgs/os-specific/linux/intel-compute-runtime/default.nix @@ -46,7 +46,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://github.com/intel/compute-runtime"; - description = "Intel Graphics Compute Runtime for OpenCL. Replaces Beignet for Gen8 (Broadwell) and beyond."; + description = "Intel Graphics Compute Runtime for OpenCL. Replaces Beignet for Gen8 (Broadwell) and beyond"; license = licenses.mit; platforms = platforms.linux; maintainers = with maintainers; [ gloaming ]; diff --git a/pkgs/os-specific/linux/iputils/default.nix b/pkgs/os-specific/linux/iputils/default.nix index e12c44888a0..3bb653ebcf7 100644 --- a/pkgs/os-specific/linux/iputils/default.nix +++ b/pkgs/os-specific/linux/iputils/default.nix @@ -1,6 +1,6 @@ -{ stdenv, fetchFromGitHub +{ stdenv, fetchFromGitHub, fetchpatch , meson, ninja, pkgconfig, gettext, libxslt, docbook_xsl_ns -, libcap, systemd, libidn2 +, libcap, libidn2 }: with stdenv.lib; @@ -22,18 +22,27 @@ in stdenv.mkDerivation rec { sha256 = "1jhbcz75a4ij1myyyi110ma1d8d5hpm3scz9pyw7js6qym50xvh4"; }; + patches = [ + # Proposed upstream patch to reduce dependency on systemd: https://github.com/iputils/iputils/pull/297 + (fetchpatch { + url = "https://github.com/iputils/iputils/commit/13d6aefd57fd471ecad06e19073dcc44608dff5e.patch"; + sha256 = "1n62zxmzp7hgz9qapbbpqv3fxqvc3qyd2a73jhp357x6by84kj49"; + }) + ]; + mesonFlags = [ "-DBUILD_RARPD=true" "-DBUILD_TRACEROUTE6=true" "-DBUILD_TFTPD=true" "-DNO_SETCAP_OR_SUID=true" "-Dsystemdunitdir=etc/systemd/system" + "-DINSTALL_SYSTEMD_UNITS=true" ] # Disable idn usage w/musl (https://github.com/iputils/iputils/pull/111): ++ optional stdenv.hostPlatform.isMusl "-DUSE_IDN=false"; nativeBuildInputs = [ meson ninja pkgconfig gettext libxslt.bin docbook_xsl_ns ]; - buildInputs = [ libcap systemd ] + buildInputs = [ libcap ] ++ optional (!stdenv.hostPlatform.isMusl) libidn2; meta = { diff --git a/pkgs/os-specific/linux/kernel/hardened/patches.json b/pkgs/os-specific/linux/kernel/hardened/patches.json index d3d678ebf43..ff410b2ab2c 100644 --- a/pkgs/os-specific/linux/kernel/hardened/patches.json +++ b/pkgs/os-specific/linux/kernel/hardened/patches.json @@ -1,27 +1,27 @@ { "4.14": { - "name": "linux-hardened-4.14.200.a.patch", - "sha256": "0z38nm0m97d8m0q34fbnlz7l0rjbf76qrvbc6kljjg7gang3cby8", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.14.200.a/linux-hardened-4.14.200.a.patch" + "name": "linux-hardened-4.14.202.a.patch", + "sha256": "0ns5yq087m7i7ciq2b4skxclnlym0zm5v0vjqvzi9r375fd0gm9s", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.14.202.a/linux-hardened-4.14.202.a.patch" }, "4.19": { - "name": "linux-hardened-4.19.150.a.patch", - "sha256": "1gx09a6rm7r7ggg9ikkzj2fh22qbr2jnlfkphkq27l4fx8241lig", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.19.150.a/linux-hardened-4.19.150.a.patch" + "name": "linux-hardened-4.19.152.a.patch", + "sha256": "0zc36yklzjb3sqd61m12c1988mazkrv242wbk7cn0a2b5sw7a373", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.19.152.a/linux-hardened-4.19.152.a.patch" }, "5.4": { - "name": "linux-hardened-5.4.70.a.patch", - "sha256": "19g7yp4dip92bh54vd8vbn7cd4p691yvb52nz76p74fdksfa71m5", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.70.a/linux-hardened-5.4.70.a.patch" - }, - "5.7": { - "name": "linux-hardened-5.7.19.a.patch", - "sha256": "1lydlh499aj3ck5cnv8q2271y4klvp17zm7j7qni16am14bld936", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.7.19.a/linux-hardened-5.7.19.a.patch" + "name": "linux-hardened-5.4.72.a.patch", + "sha256": "1w4sfkx4qj9vx47z06bkf4biaiz58z2qp536g7dss26zdbx1im26", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.72.a/linux-hardened-5.4.72.a.patch" }, "5.8": { - "name": "linux-hardened-5.8.14.a.patch", - "sha256": "08w3w0w5sw7lgm6zpsy55fz1h42s2aqcznfgxi31yv9qski31lbz", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.8.14.a/linux-hardened-5.8.14.a.patch" + "name": "linux-hardened-5.8.16.a.patch", + "sha256": "0b7bfzknz2am9pfypazqzky9bcd6659sakcdx2a7p1i3bj6zxnn1", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.8.16.a/linux-hardened-5.8.16.a.patch" + }, + "5.9": { + "name": "linux-hardened-5.9.1.a.patch", + "sha256": "07897dgkldm2dxsriapjlg9b118sd32qmd1z8xja01xcgd3r6vp7", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.9.1.a/linux-hardened-5.9.1.a.patch" } } diff --git a/pkgs/os-specific/linux/kernel/linux-4.14.nix b/pkgs/os-specific/linux/kernel/linux-4.14.nix index 5e99e74fbe6..a28531ee401 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.14.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.14.nix @@ -3,7 +3,7 @@ with stdenv.lib; buildLinux (args // rec { - version = "4.14.200"; + version = "4.14.203"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "0f4sd4fqgm1wbhmrsib04ry5aza84mlc8747y5wm6jx34h14lh2x"; + sha256 = "0c9r1s83mrn9lzgrr4wzvk4d72q70sbgf7lql6z9ivkf12v3p5mc"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.19.nix b/pkgs/os-specific/linux/kernel/linux-4.19.nix index c862a50b3e3..7a63297578b 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.19.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.19.nix @@ -3,7 +3,7 @@ with stdenv.lib; buildLinux (args // rec { - version = "4.19.150"; + version = "4.19.154"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1kmsrinhy67vh34m6z3xinwg3v6z8jm7v1asq6rqqkba13phkxzj"; + sha256 = "0ik6anz6ly0dl0lp8m5mighlvzkifnk2kljwajxa56vbhj691339"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.4.nix b/pkgs/os-specific/linux/kernel/linux-4.4.nix index b8e71531876..64d01146180 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.4.nix @@ -1,11 +1,11 @@ { stdenv, buildPackages, fetchurl, perl, buildLinux, ... } @ args: buildLinux (args // rec { - version = "4.4.238"; + version = "4.4.241"; extraMeta.branch = "4.4"; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "0r1kb7p0zf0nkavvf9nr9hs7bdjym43cqv87hkp7vrqpbh1i8y06"; + sha256 = "054jd6jgymxbkjfmk8wbckihl355gjimjg2xi5yr4v2343qi9zij"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.9.nix b/pkgs/os-specific/linux/kernel/linux-4.9.nix index c6ab9134e9d..2d81826d6c3 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.9.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.9.nix @@ -1,11 +1,11 @@ { stdenv, buildPackages, fetchurl, perl, buildLinux, ... } @ args: buildLinux (args // rec { - version = "4.9.238"; + version = "4.9.241"; extraMeta.branch = "4.9"; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "0gsa2g5yjc7459ja107nla700ma32sg57dyj8q2xzi0yfw5zdsmi"; + sha256 = "0b5k9cwz7vpaybw4nd03pn2z4d8qbhmhd9mx4j2yd0fqj57x1in4"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-5.4.nix b/pkgs/os-specific/linux/kernel/linux-5.4.nix index 32d4106bfe5..ad3334d7c93 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.4.nix @@ -3,7 +3,7 @@ with stdenv.lib; buildLinux (args // rec { - version = "5.4.70"; + version = "5.4.73"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "01shqhibrxirl9bik8jwiag70n9n0l7782xh73gkb8jvbh4dicy0"; + sha256 = "1cknwnzpimjfacjbb39ay9j4lv3767j2858xz9yvwsvj7d04nhjs"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-5.7.nix b/pkgs/os-specific/linux/kernel/linux-5.7.nix deleted file mode 100644 index 4f721d8b0e4..00000000000 --- a/pkgs/os-specific/linux/kernel/linux-5.7.nix +++ /dev/null @@ -1,18 +0,0 @@ -{ stdenv, buildPackages, fetchurl, perl, buildLinux, modDirVersionArg ? null, ... } @ args: - -with stdenv.lib; - -buildLinux (args // rec { - version = "5.7.19"; - - # modDirVersion needs to be x.y.z, will automatically add .0 if needed - modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; - - # branchVersion needs to be x.y - extraMeta.branch = versions.majorMinor version; - - src = fetchurl { - url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "1rwzp51ddlkdzanj6i8jqj5yh0njpzn7ly4r8nnzwkdfp5465721"; - }; -} // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-5.8.nix b/pkgs/os-specific/linux/kernel/linux-5.8.nix index 744b547e2bc..ee58f02db87 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.8.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.8.nix @@ -3,7 +3,7 @@ with stdenv.lib; buildLinux (args // rec { - version = "5.8.14"; + version = "5.8.17"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "1bzh82jpwcxsdzp6p1r8qlq9v5x79flhnzyimkcll8wdh28pjxpf"; + sha256 = "00rwvsrmklvkzch8bl6z29vch4dyvzxrs97pr1qd13afw7y6912n"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-5.9.nix b/pkgs/os-specific/linux/kernel/linux-5.9.nix index a7aefa209cc..05c594f7efb 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.9.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.9.nix @@ -3,7 +3,7 @@ with stdenv.lib; buildLinux (args // rec { - version = "5.9"; + version = "5.9.2"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "01hsddf4sf9q5l1innyyl34b51y48v5wi34qpr421gsh2bpa8f9j"; + sha256 = "0dh2ciyrm2ac7r4pybxa1cq3pfw3z3ilj50gdaa0clm9j7nyrx2i"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-libre.nix b/pkgs/os-specific/linux/kernel/linux-libre.nix index a51545171f8..7a831e61ae4 100644 --- a/pkgs/os-specific/linux/kernel/linux-libre.nix +++ b/pkgs/os-specific/linux/kernel/linux-libre.nix @@ -1,8 +1,8 @@ { stdenv, lib, fetchsvn, linux , scripts ? fetchsvn { url = "https://www.fsfla.org/svn/fsfla/software/linux-libre/releases/branches/"; - rev = "17718"; - sha256 = "1sgfh1mbgfxf2vcmjs5dbfn8ihkq7xf72m3lmdfxy1skmvwh1mk5"; + rev = "17744"; + sha256 = "120jf6d1xrpwf8yfqzfqp8a1189lca0si8fxci16sf4bdg5q1had"; } , ... }: diff --git a/pkgs/os-specific/linux/kernel/linux-rt-5.4.nix b/pkgs/os-specific/linux/kernel/linux-rt-5.4.nix index 144eed65aca..b1f40ac1c96 100644 --- a/pkgs/os-specific/linux/kernel/linux-rt-5.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-rt-5.4.nix @@ -6,7 +6,7 @@ , ... } @ args: let - version = "5.4.69-rt39"; # updated by ./update-rt.sh + version = "5.4.70-rt40"; # updated by ./update-rt.sh branch = lib.versions.majorMinor version; kversion = builtins.elemAt (lib.splitString "-" version) 0; in buildLinux (args // { @@ -14,14 +14,14 @@ in buildLinux (args // { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${kversion}.tar.xz"; - sha256 = "19vxsbwvfwyz1w6m7sp38d504w98zwjxaap4hfhh6wrrddqivcx8"; + sha256 = "01shqhibrxirl9bik8jwiag70n9n0l7782xh73gkb8jvbh4dicy0"; }; kernelPatches = let rt-patch = { name = "rt"; patch = fetchurl { url = "mirror://kernel/linux/kernel/projects/rt/${branch}/older/patch-${version}.patch.xz"; - sha256 = "0y01m4mx4wl0w6nnmb1h5r87i11zx6ndwk8p8d7pp7vykq79x6rn"; + sha256 = "19px04cmv1v65ad7dr3y0bjr9xviawhb26iijvnxiwyjvm0054kw"; }; }; in [ rt-patch ] ++ lib.remove rt-patch kernelPatches; diff --git a/pkgs/os-specific/linux/kernel/linux-testing.nix b/pkgs/os-specific/linux/kernel/linux-testing.nix index b056568b166..29f1aad2e48 100644 --- a/pkgs/os-specific/linux/kernel/linux-testing.nix +++ b/pkgs/os-specific/linux/kernel/linux-testing.nix @@ -3,15 +3,15 @@ with stdenv.lib; buildLinux (args // rec { - version = "5.9-rc8"; - extraMeta.branch = "5.9"; + version = "5.10-rc1"; + extraMeta.branch = "5.10"; # modDirVersion needs to be x.y.z, will always add .0 modDirVersion = if (modDirVersionArg == null) then builtins.replaceStrings ["-"] [".0-"] version else modDirVersionArg; src = fetchurl { url = "https://git.kernel.org/torvalds/t/linux-${version}.tar.gz"; - sha256 = "0yhjanmrg0cjmdn7yq8nx0h7q3aq9cimqhn9k4nis1a976p8wpgw"; + sha256 = "1s4ywf93xrlkjjq3c4142qhmsvx3kl0xwkbc09ss6gln8lwqnga8"; }; # Should the testing kernels ever be built on Hydra? diff --git a/pkgs/os-specific/linux/kernel/manual-config.nix b/pkgs/os-specific/linux/kernel/manual-config.nix index 92dc334135a..7a91705b617 100644 --- a/pkgs/os-specific/linux/kernel/manual-config.nix +++ b/pkgs/os-specific/linux/kernel/manual-config.nix @@ -233,10 +233,10 @@ let rm -fR drivers # Keep all headers - find . -type f -name '*.h' -print0 | xargs -0 chmod u-w + find . -type f -name '*.h' -print0 | xargs -0 -r chmod u-w # Keep linker scripts (they are required for out-of-tree modules on aarch64) - find . -type f -name '*.lds' -print0 | xargs -0 chmod u-w + find . -type f -name '*.lds' -print0 | xargs -0 -r chmod u-w # Keep root and arch-specific Makefiles chmod u-w Makefile @@ -246,7 +246,7 @@ let chmod u-w -R scripts # Delete everything not kept - find . -type f -perm -u=w -print0 | xargs -0 rm + find . -type f -perm -u=w -print0 | xargs -0 -r rm # Delete empty directories find -empty -type d -delete diff --git a/pkgs/os-specific/linux/keyutils/default.nix b/pkgs/os-specific/linux/keyutils/default.nix index 553b0b87f41..fb06f942e48 100644 --- a/pkgs/os-specific/linux/keyutils/default.nix +++ b/pkgs/os-specific/linux/keyutils/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { pname = "keyutils"; - version = "1.6.1"; + version = "1.6.3"; src = fetchurl { url = "https://git.kernel.org/pub/scm/linux/kernel/git/dhowells/keyutils.git/snapshot/${pname}-${version}.tar.gz"; - sha256 = "0mzmw8c7gqmqaxm3sa0xki8ycjla47xxhqg0yh17pl00d7ydqw9w"; + sha256 = "sha256-ph1XBhNq5MBb1I+GGGvP29iN2L1RB+Phlckkz8Gzm7Q="; }; patches = [ @@ -26,6 +26,8 @@ stdenv.mkDerivation rec { BUILDDATE = "1970-01-01"; outputs = [ "out" "lib" "dev" ]; + enableParallelBuilding = true; + installFlags = [ "ETCDIR=$(out)/etc" "BINDIR=$(out)/bin" diff --git a/pkgs/os-specific/linux/libevdevc/default.nix b/pkgs/os-specific/linux/libevdevc/default.nix index e3dfbd3d6c2..372f110f347 100644 --- a/pkgs/os-specific/linux/libevdevc/default.nix +++ b/pkgs/os-specific/linux/libevdevc/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { makeFlags = [ "DESTDIR=$(out)" "LIBDIR=/lib" ]; meta = with stdenv.lib; { - description = "ChromiumOS libevdev. Renamed to avoid conflicts with the standard libevdev found in Linux distros."; + description = "ChromiumOS libevdev. Renamed to avoid conflicts with the standard libevdev found in Linux distros"; license = licenses.bsd3; platforms = platforms.linux; homepage = "https://chromium.googlesource.com/chromiumos/platform/libevdev/"; diff --git a/pkgs/os-specific/linux/libgestures/default.nix b/pkgs/os-specific/linux/libgestures/default.nix index 4c51525727a..46d25df31b9 100644 --- a/pkgs/os-specific/linux/libgestures/default.nix +++ b/pkgs/os-specific/linux/libgestures/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { makeFlags = [ "DESTDIR=$(out)" "LIBDIR=/lib" ]; meta = with stdenv.lib; { - description = "ChromiumOS libgestures modified to compile for Linux."; + description = "ChromiumOS libgestures modified to compile for Linux"; license = licenses.bsd3; platforms = platforms.linux; homepage = "https://chromium.googlesource.com/chromiumos/platform/gestures"; diff --git a/pkgs/os-specific/linux/lksctp-tools/default.nix b/pkgs/os-specific/linux/lksctp-tools/default.nix index bef74cd33ba..6ddf4db562b 100644 --- a/pkgs/os-specific/linux/lksctp-tools/default.nix +++ b/pkgs/os-specific/linux/lksctp-tools/default.nix @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { }; meta = with stdenv.lib; { - description = "Linux Kernel Stream Control Transmission Protocol Tools."; + description = "Linux Kernel Stream Control Transmission Protocol Tools"; homepage = "http://lksctp.sourceforge.net/"; license = with licenses; [ gpl2 lgpl21 ]; # library is lgpl21 platforms = platforms.linux; diff --git a/pkgs/os-specific/linux/nfs-utils/default.nix b/pkgs/os-specific/linux/nfs-utils/default.nix index 719ded4d70f..81ec7e5a661 100644 --- a/pkgs/os-specific/linux/nfs-utils/default.nix +++ b/pkgs/os-specific/linux/nfs-utils/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl, fetchpatch, lib, pkgconfig, utillinux, libcap, libtirpc, libevent , sqlite, kerberos, kmod, libuuid, keyutils, lvm2, systemd, coreutils, tcp_wrappers -, python3, buildPackages, nixosTests +, python3, buildPackages, nixosTests, rpcsvc-proto , enablePython ? true }: @@ -10,18 +10,18 @@ in stdenv.mkDerivation rec { pname = "nfs-utils"; - version = "2.4.1"; + version = "2.5.1"; src = fetchurl { url = "https://kernel.org/pub/linux/utils/nfs-utils/${version}/${pname}-${version}.tar.xz"; - sha256 = "0dkp11a7i01c378ri68bf6k56z27kz8zzvpqm7mip6s7jkd4l9w5"; + sha256 = "1i1h3n2m35q9ixs1i2qf1rpjp10cipa3c25zdf1xj1vaw5q8270g"; }; # libnfsidmap is built together with nfs-utils from the same source, # put it in the "lib" output, and the headers in "dev" outputs = [ "out" "dev" "lib" "man" ]; - nativeBuildInputs = [ pkgconfig buildPackages.stdenv.cc ]; + nativeBuildInputs = [ pkgconfig buildPackages.stdenv.cc rpcsvc-proto ]; buildInputs = [ libtirpc libcap libevent sqlite lvm2 @@ -45,8 +45,8 @@ stdenv.mkDerivation rec { "--with-systemd=${placeholder "out"}/etc/systemd/system" "--enable-libmount-mount" "--with-pluginpath=${placeholder "lib"}/lib/libnfsidmap" # this installs libnfsidmap - ] - ++ lib.optional (stdenv ? glibc) "--with-rpcgen=${stdenv.glibc.bin}/bin/rpcgen"; + "--with-rpcgen=${rpcsvc-proto}/bin/rpcgen" + ]; patches = lib.optionals stdenv.hostPlatform.isMusl [ (fetchpatch { diff --git a/pkgs/os-specific/linux/numactl/default.nix b/pkgs/os-specific/linux/numactl/default.nix index 8505fbc750f..6e16ecabba2 100644 --- a/pkgs/os-specific/linux/numactl/default.nix +++ b/pkgs/os-specific/linux/numactl/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "numactl"; - version = "2.0.13"; + version = "2.0.14"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "08xj0n27qh0ly8hjallnx774gicz15nfq0yyxz8zhgy6pq8l33vv"; + sha256 = "0hahpdp5xqy9cbg251bdxqkml341djn2h856g435h4ngz63sr9fs"; }; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/os-specific/linux/nvidia-x11/default.nix b/pkgs/os-specific/linux/nvidia-x11/default.nix index 7c37fcf231f..75ce13da0d3 100644 --- a/pkgs/os-specific/linux/nvidia-x11/default.nix +++ b/pkgs/os-specific/linux/nvidia-x11/default.nix @@ -22,10 +22,10 @@ rec { # Policy: use the highest stable version as the default (on our master). stable = if stdenv.hostPlatform.system == "x86_64-linux" then generic { - version = "450.66"; - sha256_64bit = "1a6va0gvbzpkyza693v2ml1is4xbv8wxasqk0zd5y7rxin94c1ms"; - settingsSha256 = "0mkgs91gx7xb7f24xkq9fl7i8d4l7s0wr9a44b1gm1vkw82fm7lj"; - persistencedSha256 = "02id8cg8fba7c1j4m6vj4gp2mv39lz2k557kdjw8lszcpw6f1fhh"; + version = "455.28"; + sha256_64bit = "03ysf61qrb272yqkn7bhn9d65lcfhmqc2c0dbh5prp5f2ndlkqg4"; + settingsSha256 = "0r9vclmh48yhcrnz9yrswfipj5450ga73jywdjg19gaq2s2aaf1f"; + persistencedSha256 = "04v9d2g1r0x5dgyy9hqqyp0p9a3qxy1kzl13vklfqrwswb8jw7z1"; } else legacy_390; diff --git a/pkgs/os-specific/linux/nvme-cli/default.nix b/pkgs/os-specific/linux/nvme-cli/default.nix index 80a00082b81..b848a868274 100644 --- a/pkgs/os-specific/linux/nvme-cli/default.nix +++ b/pkgs/os-specific/linux/nvme-cli/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "nvme-cli"; - version = "1.12"; + version = "1.13"; src = fetchFromGitHub { owner = "linux-nvme"; repo = "nvme-cli"; rev = "v${version}"; - sha256 = "0ldky34sn0m5c4hgiip0fkzm465nca69bhxicpd5dg8wxhzxqrp3"; + sha256 = "1d538kp841bjh8h8d9q7inqz56rdcwb3m78zfx8607ddykv7wcqb"; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/os-specific/linux/psftools/default.nix b/pkgs/os-specific/linux/psftools/default.nix new file mode 100644 index 00000000000..a71e7ef0dcc --- /dev/null +++ b/pkgs/os-specific/linux/psftools/default.nix @@ -0,0 +1,24 @@ +{ stdenv, fetchurl }: +stdenv.mkDerivation rec { + pname = "psftools"; + version = "1.0.13"; + src = fetchurl { + url = "https://www.seasip.info/Unix/PSF/${pname}-${version}.tar.gz"; + sha256 = "0rgg1lhryqi6sgm4afhw0z6pjivdw4hyhpxanj8rabyabn4fcqcw"; + }; + outputs = ["out" "man" "dev" "lib"]; + + meta = with stdenv.lib; { + homepage = "https://www.seasip.info/Unix/PSF"; + description = "Conversion tools for .PSF fonts"; + longDescription = '' + The PSFTOOLS are designed to manipulate fixed-width bitmap fonts, + such as DOS or Linux console fonts. Both the PSF1 (8 pixels wide) + and PSF2 (any width) formats are supported; the default output + format is PSF2. + ''; + platforms = platforms.linux; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ kaction ]; + }; +} diff --git a/pkgs/os-specific/linux/raspberrypi-eeprom/default.nix b/pkgs/os-specific/linux/raspberrypi-eeprom/default.nix new file mode 100644 index 00000000000..ff9c8f4ce8b --- /dev/null +++ b/pkgs/os-specific/linux/raspberrypi-eeprom/default.nix @@ -0,0 +1,56 @@ +{ stdenvNoCC, lib, fetchFromGitHub, makeWrapper +, python3, binutils-unwrapped, findutils, kmod, pciutils, raspberrypi-tools +}: +stdenvNoCC.mkDerivation { + pname = "raspberrypi-eeprom"; + version = "unstable-2020-10-05"; + + src = fetchFromGitHub { + owner = "raspberrypi"; + repo = "rpi-eeprom"; + rev = "718820bcebd21d4a619fa262d9b9cf3acbf110f8"; + sha256 = "1277jsiyv34dqpandva8kxy1s0y5ql344pl9gk84avzp1mqjnv4g"; + }; + + buildInputs = [ python3 ]; + nativeBuildInputs = [ makeWrapper ]; + + postPatch = '' + # Don't try to verify md5 signatures from /var/lib/dpkg and + # fix path to the configuration. + substituteInPlace rpi-eeprom-update \ + --replace 'IGNORE_DPKG_CHECKSUMS=$LOCAL_MODE' 'IGNORE_DPKG_CHECKSUMS=1' \ + --replace '/etc/default' '/etc' + ''; + + installPhase = '' + mkdir -p $out/bin $out/share/rpi-eeprom + + cp rpi-eeprom-config rpi-eeprom-update $out/bin + cp -r firmware/{beta,critical,old,stable} $out/share/rpi-eeprom + cp -r firmware/vl805 $out/bin + ''; + + fixupPhase = '' + patchShebangs $out/bin + wrapProgram $out/bin/rpi-eeprom-update \ + --set FIRMWARE_ROOT $out/share/rpi-eeprom \ + ${lib.optionalString stdenvNoCC.isAarch64 "--set VCMAILBOX ${raspberrypi-tools}/bin/vcmailbox"} \ + --prefix PATH : "${lib.makeBinPath ([ + binutils-unwrapped + findutils + kmod + pciutils + (placeholder "out") + ] ++ lib.optionals stdenvNoCC.isAarch64 [ + raspberrypi-tools + ])}" + ''; + + meta = with lib; { + description = "Installation scripts and binaries for the closed sourced Raspberry Pi 4 EEPROMs"; + homepage = "https://www.raspberrypi.org/documentation/hardware/raspberrypi/booteeprom.md"; + license = with licenses; [ bsd3 unfreeRedistributableFirmware ]; + maintainers = with maintainers; [ das_j ]; + }; +} diff --git a/pkgs/os-specific/linux/shadow/default.nix b/pkgs/os-specific/linux/shadow/default.nix index fbcecf05f18..7399ac90586 100644 --- a/pkgs/os-specific/linux/shadow/default.nix +++ b/pkgs/os-specific/linux/shadow/default.nix @@ -19,13 +19,13 @@ in stdenv.mkDerivation rec { pname = "shadow"; - version = "4.8"; + version = "4.8.1"; src = fetchFromGitHub { owner = "shadow-maint"; repo = "shadow"; rev = version; - sha256 = "05a636dqxip09l5jjrrs30lvwq6xkhjrdgjbbj3bg6b6z7hc67qk"; + sha256 = "13407r6qwss00504qy740jghb2dzd561la7dhp47rg8w3g8jarpn"; }; buildInputs = stdenv.lib.optional (pam != null && stdenv.isLinux) pam; diff --git a/pkgs/os-specific/linux/systemd/0001-Start-device-units-for-uninitialised-encrypted-devic.patch b/pkgs/os-specific/linux/systemd/0001-Start-device-units-for-uninitialised-encrypted-devic.patch index 390e7f9f09b..1f75fc63ffe 100644 --- a/pkgs/os-specific/linux/systemd/0001-Start-device-units-for-uninitialised-encrypted-devic.patch +++ b/pkgs/os-specific/linux/systemd/0001-Start-device-units-for-uninitialised-encrypted-devic.patch @@ -1,4 +1,4 @@ -From 54fb14592fc41752c3cd26552c974dd1ad4b9e73 Mon Sep 17 00:00:00 2001 +From 46c8ccfeb61253cd3dff5f34013670c7e3366ef5 Mon Sep 17 00:00:00 2001 From: Eelco Dolstra Date: Tue, 8 Jan 2013 15:46:30 +0100 Subject: [PATCH 01/18] Start device units for uninitialised encrypted devices @@ -28,5 +28,5 @@ index 1c60eec587..b2486da130 100644 SUBSYSTEM=="block", ENV{ID_PART_GPT_AUTO_ROOT}=="1", ENV{ID_FS_TYPE}!="crypto_LUKS", SYMLINK+="gpt-auto-root" SUBSYSTEM=="block", ENV{ID_PART_GPT_AUTO_ROOT}=="1", ENV{ID_FS_TYPE}=="crypto_LUKS", SYMLINK+="gpt-auto-root-luks" -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0002-Don-t-try-to-unmount-nix-or-nix-store.patch b/pkgs/os-specific/linux/systemd/0002-Don-t-try-to-unmount-nix-or-nix-store.patch index 9bb69092ca4..7c025cbb7d7 100644 --- a/pkgs/os-specific/linux/systemd/0002-Don-t-try-to-unmount-nix-or-nix-store.patch +++ b/pkgs/os-specific/linux/systemd/0002-Don-t-try-to-unmount-nix-or-nix-store.patch @@ -1,4 +1,4 @@ -From d52880eeae09aaacd308430499f55810157b1a6d Mon Sep 17 00:00:00 2001 +From 139c420de62e078182eaf48b541c4b912d445fd9 Mon Sep 17 00:00:00 2001 From: Eelco Dolstra Date: Fri, 12 Apr 2013 13:16:57 +0200 Subject: [PATCH 02/18] Don't try to unmount /nix or /nix/store @@ -38,5 +38,5 @@ index 8a5e80eeaa..fab35ed6f3 100644 || path_equal(path, "/usr") #endif -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0003-Fix-NixOS-containers.patch b/pkgs/os-specific/linux/systemd/0003-Fix-NixOS-containers.patch index 5ee54f39b74..1f0b8aaf38b 100644 --- a/pkgs/os-specific/linux/systemd/0003-Fix-NixOS-containers.patch +++ b/pkgs/os-specific/linux/systemd/0003-Fix-NixOS-containers.patch @@ -1,4 +1,4 @@ -From 794073e466a3b6c8e138f0e6d15c8d6465a1a4a9 Mon Sep 17 00:00:00 2001 +From a889dbe796cd72425f38dec3d2aaab44a914ac60 Mon Sep 17 00:00:00 2001 From: Eelco Dolstra Date: Wed, 16 Apr 2014 10:59:28 +0200 Subject: [PATCH 03/18] Fix NixOS containers @@ -10,7 +10,7 @@ container, so checking early whether it exists will fail. 1 file changed, 2 insertions(+) diff --git a/src/nspawn/nspawn.c b/src/nspawn/nspawn.c -index 3b9493f232..0117a9939d 100644 +index 43712565c2..07f294c78a 100644 --- a/src/nspawn/nspawn.c +++ b/src/nspawn/nspawn.c @@ -5122,6 +5122,7 @@ static int run(int argc, char *argv[]) { @@ -30,5 +30,5 @@ index 3b9493f232..0117a9939d 100644 } else { -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0004-Look-for-fsck-in-the-right-place.patch b/pkgs/os-specific/linux/systemd/0004-Look-for-fsck-in-the-right-place.patch index cdef28ad68e..f9e7bc9d876 100644 --- a/pkgs/os-specific/linux/systemd/0004-Look-for-fsck-in-the-right-place.patch +++ b/pkgs/os-specific/linux/systemd/0004-Look-for-fsck-in-the-right-place.patch @@ -1,4 +1,4 @@ -From caa8dcfa87cf2e46a7a1cce9c16f929916cf9186 Mon Sep 17 00:00:00 2001 +From 5098b1aad07356e04fcd12f2c77ea4fd17460411 Mon Sep 17 00:00:00 2001 From: Eelco Dolstra Date: Thu, 1 May 2014 14:10:10 +0200 Subject: [PATCH 04/18] Look for fsck in the right place @@ -21,5 +21,5 @@ index 80f7107b9d..74e48a385f 100644 cmdline[i++] = "-T"; -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0005-Add-some-NixOS-specific-unit-directories.patch b/pkgs/os-specific/linux/systemd/0005-Add-some-NixOS-specific-unit-directories.patch index 95dd17531ab..91d6fbf41d6 100644 --- a/pkgs/os-specific/linux/systemd/0005-Add-some-NixOS-specific-unit-directories.patch +++ b/pkgs/os-specific/linux/systemd/0005-Add-some-NixOS-specific-unit-directories.patch @@ -1,4 +1,4 @@ -From e5d73359928b79bd846bda29ce61fe276d8c0b76 Mon Sep 17 00:00:00 2001 +From b46f1b20e990f01af4bdf3dd6fef45f5b4a5993e Mon Sep 17 00:00:00 2001 From: Eelco Dolstra Date: Fri, 19 Dec 2014 14:46:17 +0100 Subject: [PATCH 05/18] Add some NixOS-specific unit directories @@ -120,5 +120,5 @@ index 8424837824..b1c541bc52 100644 systemd_system_generator_dir=${root_prefix}/lib/systemd/system-generators -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0006-Get-rid-of-a-useless-message-in-user-sessions.patch b/pkgs/os-specific/linux/systemd/0006-Get-rid-of-a-useless-message-in-user-sessions.patch index 3e519e7fe73..8021472ea33 100644 --- a/pkgs/os-specific/linux/systemd/0006-Get-rid-of-a-useless-message-in-user-sessions.patch +++ b/pkgs/os-specific/linux/systemd/0006-Get-rid-of-a-useless-message-in-user-sessions.patch @@ -1,4 +1,4 @@ -From 1a3de021d9b8da060a77af6e26d2b61bafefda74 Mon Sep 17 00:00:00 2001 +From 4c9f9d192182f1051dba1c547e182e7c8f549b0f Mon Sep 17 00:00:00 2001 From: Eelco Dolstra Date: Mon, 11 May 2015 15:39:38 +0200 Subject: [PATCH 06/18] Get rid of a useless message in user sessions @@ -13,7 +13,7 @@ in containers. 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/core/unit.c b/src/core/unit.c -index 2c09def06f..c70540e1a3 100644 +index 1bda568560..5b44970763 100644 --- a/src/core/unit.c +++ b/src/core/unit.c @@ -2150,7 +2150,8 @@ static void unit_check_binds_to(Unit *u) { @@ -27,5 +27,5 @@ index 2c09def06f..c70540e1a3 100644 /* A unit we need to run is gone. Sniff. Let's stop this. */ r = manager_add_job(u->manager, JOB_STOP, u, JOB_FAIL, NULL, &error, NULL); -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0007-hostnamed-localed-timedated-disable-methods-that-cha.patch b/pkgs/os-specific/linux/systemd/0007-hostnamed-localed-timedated-disable-methods-that-cha.patch index b63a051ae07..6c24821c2a0 100644 --- a/pkgs/os-specific/linux/systemd/0007-hostnamed-localed-timedated-disable-methods-that-cha.patch +++ b/pkgs/os-specific/linux/systemd/0007-hostnamed-localed-timedated-disable-methods-that-cha.patch @@ -1,4 +1,4 @@ -From 6c12e0d2afe80563e692fc1f2f545a487c83418c Mon Sep 17 00:00:00 2001 +From 539f3af04963a6826d2b2d0ba2095af99a7a6294 Mon Sep 17 00:00:00 2001 From: Gabriel Ebner Date: Sun, 6 Dec 2015 14:26:36 +0100 Subject: [PATCH 07/18] hostnamed, localed, timedated: disable methods that @@ -104,5 +104,5 @@ index c467b85477..3e78b2f575 100644 if (r < 0) return r; -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0008-Fix-hwdb-paths.patch b/pkgs/os-specific/linux/systemd/0008-Fix-hwdb-paths.patch index 63bd03fcf38..7b17c3bcb2b 100644 --- a/pkgs/os-specific/linux/systemd/0008-Fix-hwdb-paths.patch +++ b/pkgs/os-specific/linux/systemd/0008-Fix-hwdb-paths.patch @@ -1,4 +1,4 @@ -From 1e40be83eca9a831509ae764081c2252934478c3 Mon Sep 17 00:00:00 2001 +From 5c2a1a6d33f7cdbcb8ddcc70b91ba4c7f3c383b3 Mon Sep 17 00:00:00 2001 From: Nikolay Amiantov Date: Thu, 7 Jul 2016 02:47:13 +0300 Subject: [PATCH 08/18] Fix hwdb paths @@ -28,5 +28,5 @@ index b3febdbb31..eba00a5bc7 100644 _public_ int sd_hwdb_new(sd_hwdb **ret) { _cleanup_(sd_hwdb_unrefp) sd_hwdb *hwdb = NULL; -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0009-Change-usr-share-zoneinfo-to-etc-zoneinfo.patch b/pkgs/os-specific/linux/systemd/0009-Change-usr-share-zoneinfo-to-etc-zoneinfo.patch index dcdc0cd7ea0..e0fab399feb 100644 --- a/pkgs/os-specific/linux/systemd/0009-Change-usr-share-zoneinfo-to-etc-zoneinfo.patch +++ b/pkgs/os-specific/linux/systemd/0009-Change-usr-share-zoneinfo-to-etc-zoneinfo.patch @@ -1,4 +1,4 @@ -From 5e235e1f720f37fc5581b40c9a13d365368e74a8 Mon Sep 17 00:00:00 2001 +From a8ccba372d865429b578e72fd104a693b96101b3 Mon Sep 17 00:00:00 2001 From: Nikolay Amiantov Date: Tue, 11 Oct 2016 13:12:08 +0300 Subject: [PATCH 09/18] Change /usr/share/zoneinfo to /etc/zoneinfo @@ -66,10 +66,10 @@ index 15cc1b8851..d0abde5933 100644 return -EINVAL; diff --git a/src/firstboot/firstboot.c b/src/firstboot/firstboot.c -index a3f442518e..feff49e280 100644 +index c9fc8dd5cd..44fc04dc88 100644 --- a/src/firstboot/firstboot.c +++ b/src/firstboot/firstboot.c -@@ -459,7 +459,7 @@ static int process_timezone(void) { +@@ -460,7 +460,7 @@ static int process_timezone(void) { if (isempty(arg_timezone)) return 0; @@ -79,7 +79,7 @@ index a3f442518e..feff49e280 100644 (void) mkdir_parents(etc_localtime, 0755); if (symlink(e, etc_localtime) < 0) diff --git a/src/nspawn/nspawn.c b/src/nspawn/nspawn.c -index 0117a9939d..d86445b40f 100644 +index 07f294c78a..cf86d1f494 100644 --- a/src/nspawn/nspawn.c +++ b/src/nspawn/nspawn.c @@ -1699,8 +1699,8 @@ static int userns_mkdir(const char *root, const char *path, mode_t mode, uid_t u @@ -128,5 +128,5 @@ index 3e78b2f575..de5477a08f 100644 return -ENOMEM; -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0010-localectl-use-etc-X11-xkb-for-list-x11.patch b/pkgs/os-specific/linux/systemd/0010-localectl-use-etc-X11-xkb-for-list-x11.patch index 50c2a1174df..44ed04d9e7e 100644 --- a/pkgs/os-specific/linux/systemd/0010-localectl-use-etc-X11-xkb-for-list-x11.patch +++ b/pkgs/os-specific/linux/systemd/0010-localectl-use-etc-X11-xkb-for-list-x11.patch @@ -1,4 +1,4 @@ -From 141d1d7acf5f018df86f0a5f7fbe49a8e928fd73 Mon Sep 17 00:00:00 2001 +From 84a2d35d4e75295edf7e190a94dfaf65db4973b6 Mon Sep 17 00:00:00 2001 From: Imuli Date: Wed, 19 Oct 2016 08:46:47 -0400 Subject: [PATCH 10/18] localectl: use /etc/X11/xkb for list-x11-* @@ -23,5 +23,5 @@ index e0664de826..c521f33a2a 100644 return log_error_errno(errno, "Failed to open keyboard mapping list. %m"); -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0011-build-don-t-create-statedir-and-don-t-touch-prefixdi.patch b/pkgs/os-specific/linux/systemd/0011-build-don-t-create-statedir-and-don-t-touch-prefixdi.patch index 8ad310984ed..e5d4f1701ba 100644 --- a/pkgs/os-specific/linux/systemd/0011-build-don-t-create-statedir-and-don-t-touch-prefixdi.patch +++ b/pkgs/os-specific/linux/systemd/0011-build-don-t-create-statedir-and-don-t-touch-prefixdi.patch @@ -1,4 +1,4 @@ -From db3946f465c0066fb1775a92c1fcc6450134904d Mon Sep 17 00:00:00 2001 +From 81ee9b5cd46f78de139c39e2a18f39e658c60169 Mon Sep 17 00:00:00 2001 From: Franz Pletz Date: Sun, 11 Feb 2018 04:37:44 +0100 Subject: [PATCH 11/18] build: don't create statedir and don't touch prefixdir @@ -8,10 +8,10 @@ Subject: [PATCH 11/18] build: don't create statedir and don't touch prefixdir 1 file changed, 3 deletions(-) diff --git a/meson.build b/meson.build -index dbbddb68e2..bbeb23223d 100644 +index ba9e7afe53..2ef9d4d770 100644 --- a/meson.build +++ b/meson.build -@@ -3369,9 +3369,6 @@ install_data('LICENSE.GPL2', +@@ -3371,9 +3371,6 @@ install_data('LICENSE.GPL2', 'src/libsystemd/sd-bus/GVARIANT-SERIALIZATION', install_dir : docdir) @@ -22,5 +22,5 @@ index dbbddb68e2..bbeb23223d 100644 check_help = find_program('tools/check-help.sh') -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0012-Install-default-configuration-into-out-share-factory.patch b/pkgs/os-specific/linux/systemd/0012-Install-default-configuration-into-out-share-factory.patch index 0844f85763b..d1961d32f9f 100644 --- a/pkgs/os-specific/linux/systemd/0012-Install-default-configuration-into-out-share-factory.patch +++ b/pkgs/os-specific/linux/systemd/0012-Install-default-configuration-into-out-share-factory.patch @@ -1,4 +1,4 @@ -From 245af064c4d315d868cc12201b3663f61702cce3 Mon Sep 17 00:00:00 2001 +From 7dbe84b7c43669dccd90db8ac33c38a70e6b6914 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= Date: Mon, 26 Feb 2018 14:25:57 +0000 Subject: [PATCH 12/18] Install default configuration into $out/share/factory @@ -44,7 +44,7 @@ index 5c77387a26..6404bc01ba 100644 meson.add_install_script('sh', '-c', 'test -n "$DESTDIR" || @0@/systemd-hwdb update' diff --git a/meson.build b/meson.build -index bbeb23223d..1a9c56fad2 100644 +index 2ef9d4d770..ae7acbd769 100644 --- a/meson.build +++ b/meson.build @@ -163,6 +163,9 @@ udevhwdbdir = join_paths(udevlibexecdir, 'hwdb.d') @@ -57,7 +57,7 @@ index bbeb23223d..1a9c56fad2 100644 bootlibdir = join_paths(prefixdir, 'lib/systemd/boot/efi') testsdir = join_paths(prefixdir, 'lib/systemd/tests') systemdstatedir = join_paths(localstatedir, 'lib/systemd') -@@ -2651,7 +2654,7 @@ if conf.get('ENABLE_BINFMT') == 1 +@@ -2653,7 +2656,7 @@ if conf.get('ENABLE_BINFMT') == 1 meson.add_install_script('sh', '-c', mkdir_p.format(binfmtdir)) meson.add_install_script('sh', '-c', @@ -66,7 +66,7 @@ index bbeb23223d..1a9c56fad2 100644 endif if conf.get('ENABLE_REPART') == 1 -@@ -2767,7 +2770,7 @@ executable( +@@ -2769,7 +2772,7 @@ executable( install_dir : rootlibexecdir) install_data('src/sleep/sleep.conf', @@ -75,7 +75,7 @@ index bbeb23223d..1a9c56fad2 100644 public_programs += executable( 'systemd-sysctl', -@@ -3101,7 +3104,7 @@ if conf.get('HAVE_KMOD') == 1 +@@ -3103,7 +3106,7 @@ if conf.get('HAVE_KMOD') == 1 meson.add_install_script('sh', '-c', mkdir_p.format(modulesloaddir)) meson.add_install_script('sh', '-c', @@ -84,7 +84,7 @@ index bbeb23223d..1a9c56fad2 100644 endif public_programs += executable( -@@ -3352,7 +3355,7 @@ install_subdir('factory/etc', +@@ -3354,7 +3357,7 @@ install_subdir('factory/etc', install_dir : factorydir) install_data('xorg/50-systemd-user.sh', @@ -297,10 +297,10 @@ index 0a9582d8b9..3c56ca7d83 100644 + mkdir_p.format(join_paths(factoryconfdir, 'tmpfiles.d'))) endif diff --git a/units/meson.build b/units/meson.build -index aa2ed115ea..12e2925226 100644 +index 275daad3f4..491abd8eef 100644 --- a/units/meson.build +++ b/units/meson.build -@@ -323,7 +323,7 @@ install_data('user-.slice.d/10-defaults.conf', +@@ -324,7 +324,7 @@ install_data('user-.slice.d/10-defaults.conf', meson.add_install_script(meson_make_symlink, join_paths(pkgsysconfdir, 'user'), @@ -310,5 +310,5 @@ index aa2ed115ea..12e2925226 100644 join_paths(dbussystemservicedir, 'org.freedesktop.systemd1.service'), join_paths(dbussessionservicedir, 'org.freedesktop.systemd1.service')) -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0013-inherit-systemd-environment-when-calling-generators.patch b/pkgs/os-specific/linux/systemd/0013-inherit-systemd-environment-when-calling-generators.patch index a15220fd3f9..8df92b3e14f 100644 --- a/pkgs/os-specific/linux/systemd/0013-inherit-systemd-environment-when-calling-generators.patch +++ b/pkgs/os-specific/linux/systemd/0013-inherit-systemd-environment-when-calling-generators.patch @@ -1,4 +1,4 @@ -From bfaa53731ffe984c93c5321099d1341b5059f029 Mon Sep 17 00:00:00 2001 +From 4cbc82570aa8671d260c37df58688cc07106e4b6 Mon Sep 17 00:00:00 2001 From: Andreas Rammhold Date: Fri, 2 Nov 2018 21:15:42 +0100 Subject: [PATCH 13/18] inherit systemd environment when calling generators. @@ -16,10 +16,10 @@ executables that are being called from managers. 1 file changed, 8 insertions(+), 3 deletions(-) diff --git a/src/core/manager.c b/src/core/manager.c -index 41e0d73736..d02de06f09 100644 +index 6b7908fc6c..dff265c76f 100644 --- a/src/core/manager.c +++ b/src/core/manager.c -@@ -4095,9 +4095,14 @@ static int manager_run_generators(Manager *m) { +@@ -4098,9 +4098,14 @@ static int manager_run_generators(Manager *m) { argv[4] = NULL; RUN_WITH_UMASK(0022) @@ -38,5 +38,5 @@ index 41e0d73736..d02de06f09 100644 finish: -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0014-add-rootprefix-to-lookup-dir-paths.patch b/pkgs/os-specific/linux/systemd/0014-add-rootprefix-to-lookup-dir-paths.patch index dca7b5591d2..bb7a9f9474f 100644 --- a/pkgs/os-specific/linux/systemd/0014-add-rootprefix-to-lookup-dir-paths.patch +++ b/pkgs/os-specific/linux/systemd/0014-add-rootprefix-to-lookup-dir-paths.patch @@ -1,4 +1,4 @@ -From d8b93ef32f3b95a6ce6548a8ad1504a485ffbe81 Mon Sep 17 00:00:00 2001 +From 1f39dba787e07d0a6944416ec172ee5d7cc86acd Mon Sep 17 00:00:00 2001 From: Andreas Rammhold Date: Thu, 9 May 2019 11:15:22 +0200 Subject: [PATCH 14/18] add rootprefix to lookup dir paths @@ -34,5 +34,5 @@ index 970654a1ad..bb261040f8 100644 #define CONF_PATHS(n) \ CONF_PATHS_USR(n) \ -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0015-systemd-shutdown-execute-scripts-in-etc-systemd-syst.patch b/pkgs/os-specific/linux/systemd/0015-systemd-shutdown-execute-scripts-in-etc-systemd-syst.patch index 1bd9e23d25c..86ab43c1908 100644 --- a/pkgs/os-specific/linux/systemd/0015-systemd-shutdown-execute-scripts-in-etc-systemd-syst.patch +++ b/pkgs/os-specific/linux/systemd/0015-systemd-shutdown-execute-scripts-in-etc-systemd-syst.patch @@ -1,4 +1,4 @@ -From b3bc0aa899c51d19edfb53af2b00dde64123ab06 Mon Sep 17 00:00:00 2001 +From f7c462d37063b0077345395f54377c39d1ef0590 Mon Sep 17 00:00:00 2001 From: Nikolay Amiantov Date: Thu, 25 Jul 2019 20:45:55 +0300 Subject: [PATCH 15/18] systemd-shutdown: execute scripts in @@ -23,5 +23,5 @@ index 06c9710c6e..dadcc3117d 100644 /* The log target defaults to console, but the original systemd process will pass its log target in through a * command line argument, which will override this default. Also, ensure we'll never log to the journal or -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0016-systemd-sleep-execute-scripts-in-etc-systemd-system-.patch b/pkgs/os-specific/linux/systemd/0016-systemd-sleep-execute-scripts-in-etc-systemd-system-.patch index d99c7ecc96c..8d20b3723af 100644 --- a/pkgs/os-specific/linux/systemd/0016-systemd-sleep-execute-scripts-in-etc-systemd-system-.patch +++ b/pkgs/os-specific/linux/systemd/0016-systemd-sleep-execute-scripts-in-etc-systemd-system-.patch @@ -1,4 +1,4 @@ -From 2679210f4ce804713bf1d244ac0fb8ac7b9b1e5f Mon Sep 17 00:00:00 2001 +From ff7cfe2d112eb166cd1937c3cc8c25491e508313 Mon Sep 17 00:00:00 2001 From: Nikolay Amiantov Date: Thu, 25 Jul 2019 20:46:58 +0300 Subject: [PATCH 16/18] systemd-sleep: execute scripts in @@ -10,7 +10,7 @@ This is needed for NixOS to use such scripts as systemd directory is immutable. 1 file changed, 1 insertion(+) diff --git a/src/sleep/sleep.c b/src/sleep/sleep.c -index 7029352ca5..6d9c636872 100644 +index 600e9c23c0..66ef1a99e1 100644 --- a/src/sleep/sleep.c +++ b/src/sleep/sleep.c @@ -182,6 +182,7 @@ static int execute(char **modes, char **states) { @@ -22,5 +22,5 @@ index 7029352ca5..6d9c636872 100644 }; -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0017-kmod-static-nodes.service-Update-ConditionFileNotEmp.patch b/pkgs/os-specific/linux/systemd/0017-kmod-static-nodes.service-Update-ConditionFileNotEmp.patch index f45e4edd8e8..6dc33fd0341 100644 --- a/pkgs/os-specific/linux/systemd/0017-kmod-static-nodes.service-Update-ConditionFileNotEmp.patch +++ b/pkgs/os-specific/linux/systemd/0017-kmod-static-nodes.service-Update-ConditionFileNotEmp.patch @@ -1,4 +1,4 @@ -From 561b0cc9a1faed5729d6f701304a65c2968394ec Mon Sep 17 00:00:00 2001 +From 600ac2dd3fc15c5717fcdf8f37899fdabf97268c Mon Sep 17 00:00:00 2001 From: Florian Klink Date: Sat, 7 Mar 2020 22:40:27 +0100 Subject: [PATCH 17/18] kmod-static-nodes.service: Update ConditionFileNotEmpty @@ -23,5 +23,5 @@ index 0971edf9ec..87105a87b9 100644 [Service] Type=oneshot -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0018-path-util.h-add-placeholder-for-DEFAULT_PATH_NORMAL.patch b/pkgs/os-specific/linux/systemd/0018-path-util.h-add-placeholder-for-DEFAULT_PATH_NORMAL.patch index a964aeede76..bf011f701ec 100644 --- a/pkgs/os-specific/linux/systemd/0018-path-util.h-add-placeholder-for-DEFAULT_PATH_NORMAL.patch +++ b/pkgs/os-specific/linux/systemd/0018-path-util.h-add-placeholder-for-DEFAULT_PATH_NORMAL.patch @@ -1,4 +1,4 @@ -From 0d9d7c03054babdbd1fa5f6f266b56e8c96e9ba5 Mon Sep 17 00:00:00 2001 +From 42419ff4dc7a36607189f8d3765aa836d5c5eaf9 Mon Sep 17 00:00:00 2001 From: Florian Klink Date: Sun, 8 Mar 2020 01:05:54 +0100 Subject: [PATCH 18/18] path-util.h: add placeholder for DEFAULT_PATH_NORMAL @@ -29,5 +29,5 @@ index 30031fca8e..d97145539a 100644 #if HAVE_SPLIT_USR # define DEFAULT_PATH DEFAULT_PATH_SPLIT_USR -- -2.27.0 +2.28.0 diff --git a/pkgs/os-specific/linux/systemd/0019-revert-get-rid-of-seat_can_multi_session.patch b/pkgs/os-specific/linux/systemd/0019-revert-get-rid-of-seat_can_multi_session.patch new file mode 100644 index 00000000000..6ed82a42e70 --- /dev/null +++ b/pkgs/os-specific/linux/systemd/0019-revert-get-rid-of-seat_can_multi_session.patch @@ -0,0 +1,13 @@ +diff --git a/src/login/logind-seat-dbus.c b/src/login/logind-seat-dbus.c +index a91765205c..742aeb1064 100644 +--- a/src/login/logind-seat-dbus.c ++++ b/src/login/logind-seat-dbus.c +@@ -451,7 +451,7 @@ static const sd_bus_vtable seat_vtable[] = { + + SD_BUS_PROPERTY("Id", "s", NULL, offsetof(Seat, id), SD_BUS_VTABLE_PROPERTY_CONST), + SD_BUS_PROPERTY("ActiveSession", "(so)", property_get_active_session, 0, SD_BUS_VTABLE_PROPERTY_EMITS_CHANGE), +- SD_BUS_PROPERTY("CanMultiSession", "b", property_get_const_true, 0, SD_BUS_VTABLE_PROPERTY_CONST|SD_BUS_VTABLE_HIDDEN), ++ SD_BUS_PROPERTY("CanMultiSession", "b", property_get_const_true, 0, SD_BUS_VTABLE_PROPERTY_CONST), + SD_BUS_PROPERTY("CanTTY", "b", property_get_can_tty, 0, SD_BUS_VTABLE_PROPERTY_CONST), + SD_BUS_PROPERTY("CanGraphical", "b", property_get_can_graphical, 0, SD_BUS_VTABLE_PROPERTY_EMITS_CHANGE), + SD_BUS_PROPERTY("Sessions", "a(so)", property_get_sessions, 0, 0), diff --git a/pkgs/os-specific/linux/systemd/default.nix b/pkgs/os-specific/linux/systemd/default.nix index 54060b156f2..cef9d96ae6e 100644 --- a/pkgs/os-specific/linux/systemd/default.nix +++ b/pkgs/os-specific/linux/systemd/default.nix @@ -18,7 +18,7 @@ }: let - version = "246"; + version = "246.6"; in stdenv.mkDerivation { inherit version; pname = "systemd"; @@ -29,7 +29,7 @@ in stdenv.mkDerivation { owner = "systemd"; repo = "systemd-stable"; rev = "v${version}"; - sha256 = "0zrkyxrh5rm45f2l1rnjyv229bcyzawfw7c63jqxwix75px60dyw"; + sha256 = "1yhj2jlighqqpw1xk9q52f3pncjn47ipi224k35d6syb94q2b988"; }; # If these need to be regenerated, `git am path/to/00*.patch` them into a @@ -54,6 +54,7 @@ in stdenv.mkDerivation { ./0016-systemd-sleep-execute-scripts-in-etc-systemd-system-.patch ./0017-kmod-static-nodes.service-Update-ConditionFileNotEmp.patch ./0018-path-util.h-add-placeholder-for-DEFAULT_PATH_NORMAL.patch + ./0019-revert-get-rid-of-seat_can_multi_session.patch ]; postPatch = '' diff --git a/pkgs/os-specific/linux/usbguard/default.nix b/pkgs/os-specific/linux/usbguard/default.nix index ad751b9cfe0..0ece2f83600 100644 --- a/pkgs/os-specific/linux/usbguard/default.nix +++ b/pkgs/os-specific/linux/usbguard/default.nix @@ -55,7 +55,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; meta = { - description = "The USBGuard software framework helps to protect your computer against BadUSB."; + description = "The USBGuard software framework helps to protect your computer against BadUSB"; homepage = "https://usbguard.github.io/"; license = licenses.gpl2; maintainers = [ maintainers.tnias ]; diff --git a/pkgs/os-specific/linux/xf86-input-cmt/default.nix b/pkgs/os-specific/linux/xf86-input-cmt/default.nix index 9f9b278d6f7..93fd7dd5b0e 100644 --- a/pkgs/os-specific/linux/xf86-input-cmt/default.nix +++ b/pkgs/os-specific/linux/xf86-input-cmt/default.nix @@ -27,7 +27,7 @@ stdenv.mkDerivation rec { ]; meta = with stdenv.lib; { - description = "Chromebook touchpad driver."; + description = "Chromebook touchpad driver"; license = licenses.bsd3; platforms = platforms.linux; homepage = "https://www.github.com/hugegreenbug/xf86-input-cmt"; diff --git a/pkgs/os-specific/linux/zfs/BACKPORT-Linux-5.8-compat-__vmalloc.patch b/pkgs/os-specific/linux/zfs/BACKPORT-Linux-5.8-compat-__vmalloc.patch deleted file mode 100644 index 780ce83d84f..00000000000 --- a/pkgs/os-specific/linux/zfs/BACKPORT-Linux-5.8-compat-__vmalloc.patch +++ /dev/null @@ -1,154 +0,0 @@ -From 6cc95288ccea12ad7b67b2b5b3997dfad8e5b5c9 Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Michael=20Niew=C3=B6hner?= - -Date: Tue, 9 Jun 2020 01:32:02 +0200 -Subject: [PATCH] BACKPORT: Linux 5.8 compat: __vmalloc() -MIME-Version: 1.0 -Content-Type: text/plain; charset=UTF-8 -Content-Transfer-Encoding: 8bit - -The `pgprot` argument has been removed from `__vmalloc` in Linux 5.8, -being `PAGE_KERNEL` always now [1]. - -Detect this during configure and define a wrapper for older kernels. - -[1] https://git.kernel.org/pub/scm/linux/kernel/git/next/linux-next.git/commit/mm/vmalloc.c?h=next-20200605&id=88dca4ca5a93d2c09e5bbc6a62fbfc3af83c4fca - -Reviewed-by: Brian Behlendorf -Co-authored-by: Sebastian Gottschall -Co-authored-by: Michael Niewöhner -Signed-off-by: Sebastian Gottschall -Signed-off-by: Michael Niewöhner -Closes #10422 ---- - config/kernel-kmem.m4 | 26 ++++++++++++++++++++++++++ - config/kernel.m4 | 2 ++ - include/spl/sys/kmem.h | 9 +++++++++ - module/spl/spl-kmem-cache.c | 4 ++-- - module/spl/spl-kmem.c | 9 ++++----- - 5 files changed, 43 insertions(+), 7 deletions(-) - -diff --git a/config/kernel-kmem.m4 b/config/kernel-kmem.m4 -index cc055e530..f1c0d2412 100644 ---- a/config/kernel-kmem.m4 -+++ b/config/kernel-kmem.m4 -@@ -56,3 +56,29 @@ AC_DEFUN([SPL_AC_DEBUG_KMEM_TRACKING], [ - AC_MSG_CHECKING([whether detailed kmem tracking is enabled]) - AC_MSG_RESULT([$enable_debug_kmem_tracking]) - ]) -+ -+dnl # -+dnl # 5.8 API, -+dnl # __vmalloc PAGE_KERNEL removal -+dnl # -+AC_DEFUN([ZFS_AC_KERNEL_SRC_VMALLOC_PAGE_KERNEL], [ -+ ZFS_LINUX_TEST_SRC([__vmalloc], [ -+ #include -+ #include -+ ],[ -+ void *p __attribute__ ((unused)); -+ -+ p = __vmalloc(0, GFP_KERNEL, PAGE_KERNEL); -+ ]) -+]) -+ -+AC_DEFUN([ZFS_AC_KERNEL_VMALLOC_PAGE_KERNEL], [ -+ AC_MSG_CHECKING([whether __vmalloc(ptr, flags, pageflags) is available]) -+ ZFS_LINUX_TEST_RESULT([__vmalloc], [ -+ AC_MSG_RESULT(yes) -+ AC_DEFINE(HAVE_VMALLOC_PAGE_KERNEL, 1, [__vmalloc page flags exists]) -+ ],[ -+ AC_MSG_RESULT(no) -+ ]) -+]) -+- -diff --git a/config/kernel.m4 b/config/kernel.m4 -index b67fcef8c..23edfdcd8 100644 ---- a/config/kernel.m4 -+++ b/config/kernel.m4 -@@ -45,6 +45,7 @@ AC_DEFUN([ZFS_AC_KERNEL_TEST_SRC], [ - ZFS_AC_KERNEL_SRC_SCHED - ZFS_AC_KERNEL_SRC_USLEEP_RANGE - ZFS_AC_KERNEL_SRC_KMEM_CACHE -+ ZFS_AC_KERNEL_SRC_VMALLOC_PAGE_KERNEL - ZFS_AC_KERNEL_SRC_WAIT - ZFS_AC_KERNEL_SRC_INODE_TIMES - ZFS_AC_KERNEL_SRC_INODE_LOCK -@@ -163,6 +164,7 @@ AC_DEFUN([ZFS_AC_KERNEL_TEST_RESULT], [ - ZFS_AC_KERNEL_SCHED - ZFS_AC_KERNEL_USLEEP_RANGE - ZFS_AC_KERNEL_KMEM_CACHE -+ ZFS_AC_KERNEL_VMALLOC_PAGE_KERNEL - ZFS_AC_KERNEL_WAIT - ZFS_AC_KERNEL_INODE_TIMES - ZFS_AC_KERNEL_INODE_LOCK -diff --git a/include/spl/sys/kmem.h b/include/spl/sys/kmem.h -index 72d3a7765..ca15bfe7f 100644 ---- a/include/spl/sys/kmem.h -+++ b/include/spl/sys/kmem.h -@@ -169,6 +169,15 @@ extern void *spl_kmem_alloc(size_t sz, int fl, const char *func, int line); - extern void *spl_kmem_zalloc(size_t sz, int fl, const char *func, int line); - extern void spl_kmem_free(const void *ptr, size_t sz); - -+/* -+ * 5.8 API change, pgprot_t argument removed. -+ */ -+#ifdef HAVE_VMALLOC_PAGE_KERNEL -+#define spl_vmalloc(size, flags) __vmalloc(size, flags, PAGE_KERNEL) -+#else -+#define spl_vmalloc(size, flags) __vmalloc(size, flags) -+#endif -+ - /* - * The following functions are only available for internal use. - */ -diff --git a/module/spl/spl-kmem-cache.c b/module/spl/spl-kmem-cache.c -index d71b4b348..4866b2993 100644 ---- a/module/spl/spl-kmem-cache.c -+++ b/module/spl/spl-kmem-cache.c -@@ -203,7 +203,7 @@ kv_alloc(spl_kmem_cache_t *skc, int size, int flags) - ASSERT(ISP2(size)); - ptr = (void *)__get_free_pages(lflags, get_order(size)); - } else { -- ptr = __vmalloc(size, lflags | __GFP_HIGHMEM, PAGE_KERNEL); -+ ptr = spl_vmalloc(size, lflags | __GFP_HIGHMEM); - } - - /* Resulting allocated memory will be page aligned */ -@@ -1242,7 +1242,7 @@ spl_cache_grow(spl_kmem_cache_t *skc, int flags, void **obj) - * allocation. - * - * However, this can't be applied to KVM_VMEM due to a bug that -- * __vmalloc() doesn't honor gfp flags in page table allocation. -+ * spl_vmalloc() doesn't honor gfp flags in page table allocation. - */ - if (!(skc->skc_flags & KMC_VMEM)) { - rc = __spl_cache_grow(skc, flags | KM_NOSLEEP); -diff --git a/module/spl/spl-kmem.c b/module/spl/spl-kmem.c -index cee69ad43..ca1fc145f 100644 ---- a/module/spl/spl-kmem.c -+++ b/module/spl/spl-kmem.c -@@ -172,16 +172,15 @@ spl_kmem_alloc_impl(size_t size, int flags, int node) - * kmem_zalloc() callers. - * - * For vmem_alloc() and vmem_zalloc() callers it is permissible -- * to use __vmalloc(). However, in general use of __vmalloc() -- * is strongly discouraged because a global lock must be -- * acquired. Contention on this lock can significantly -+ * to use spl_vmalloc(). However, in general use of -+ * spl_vmalloc() is strongly discouraged because a global lock -+ * must be acquired. Contention on this lock can significantly - * impact performance so frequently manipulating the virtual - * address space is strongly discouraged. - */ - if ((size > spl_kmem_alloc_max) || use_vmem) { - if (flags & KM_VMEM) { -- ptr = __vmalloc(size, lflags | __GFP_HIGHMEM, -- PAGE_KERNEL); -+ ptr = spl_vmalloc(size, lflags | __GFP_HIGHMEM); - } else { - return (NULL); - } --- -2.25.1 - diff --git a/pkgs/os-specific/linux/zfs/default.nix b/pkgs/os-specific/linux/zfs/default.nix index 7cd80fd9a08..c6bd7ad9336 100644 --- a/pkgs/os-specific/linux/zfs/default.nix +++ b/pkgs/os-specific/linux/zfs/default.nix @@ -9,6 +9,7 @@ , nfs-utils , gawk, gnugrep, gnused, systemd , smartmontools, sysstat, sudo +, pkgconfig # Kernel dependencies , kernel ? null @@ -94,17 +95,14 @@ let substituteInPlace ./cmd/vdev_id/vdev_id \ --replace "PATH=/bin:/sbin:/usr/bin:/usr/sbin" \ "PATH=${makeBinPath [ coreutils gawk gnused gnugrep systemd ]}" - '' + optionalString stdenv.hostPlatform.isMusl '' - substituteInPlace config/user-libtirpc.m4 \ - --replace /usr/include/tirpc ${libtirpc}/include/tirpc ''; nativeBuildInputs = [ autoreconfHook nukeReferences ] - ++ optionals buildKernel (kernel.moduleBuildDependencies ++ [ perl ]); - buildInputs = optionals buildUser [ zlib libuuid attr ] + ++ optionals buildKernel (kernel.moduleBuildDependencies ++ [ perl ]) + ++ optional buildUser pkgconfig; + buildInputs = optionals buildUser [ zlib libuuid attr libtirpc ] ++ optional buildUser openssl - ++ optional (buildUser && enablePython) python3 - ++ optional stdenv.hostPlatform.isMusl libtirpc; + ++ optional (buildUser && enablePython) python3; # for zdb to get the rpath to libgcc_s, needed for pthread_cancel to work NIX_CFLAGS_LINK = "-lgcc_s"; @@ -113,6 +111,7 @@ let configureFlags = [ "--with-config=${configFile}" + "--with-tirpc=1" (withFeatureAs (buildUser && enablePython) "python" python3.interpreter) ] ++ optionals buildUser [ "--with-dracutdir=$(out)/lib/dracut" @@ -154,9 +153,6 @@ let substituteInPlace $i --replace "zfs-import-cache.service" "zfs-import.target" done - # Fix pkgconfig. - ln -s ../share/pkgconfig $out/lib/pkgconfig - # Remove tests because they add a runtime dependency on gcc rm -rf $out/share/zfs/zfs-tests @@ -196,10 +192,9 @@ in { # incompatibleKernelVersion = "4.20"; # this package should point to the latest release. - version = "0.8.4"; + version = "0.8.5"; - sha256 = "1hl4n900d24gl4vd65qdzq4m62b7bpvckldazcbd1xqcn8xhi6wp"; - extraPatches = [ ./BACKPORT-Linux-5.8-compat-__vmalloc.patch ]; + sha256 = "0vhd3zs2i83pd59nk0llml4vyk4fc178j6nhg00p6k3f6r0l655b"; }; zfsUnstable = common { @@ -207,9 +202,9 @@ in { # incompatibleKernelVersion = "4.19"; # this package should point to a version / git revision compatible with the latest kernel release - version = "2.0.0-rc3"; + version = "2.0.0-rc4"; - sha256 = "00fljxs6vacfhzc13bgsrmq6p3agpzcq6waw4iv2m58dr90jhlcz"; + sha256 = "12ydycmmzqm70p6hgmmg7q93j8n1xlkk3j56vvqh1zmazr3sr6r0"; isUnstable = true; }; } diff --git a/pkgs/os-specific/solo5/default.nix b/pkgs/os-specific/solo5/default.nix index 689bc2f3857..283cceb1240 100644 --- a/pkgs/os-specific/solo5/default.nix +++ b/pkgs/os-specific/solo5/default.nix @@ -45,7 +45,7 @@ in stdenv.mkDerivation { null; meta = with lib; { - description = "Sandboxed execution environment."; + description = "Sandboxed execution environment"; homepage = "https://github.com/solo5/solo5"; license = licenses.isc; maintainers = [ maintainers.ehmry ]; diff --git a/pkgs/pkgs-lib/tests/formats.nix b/pkgs/pkgs-lib/tests/formats.nix index bf6be8595e1..16b760a5ada 100644 --- a/pkgs/pkgs-lib/tests/formats.nix +++ b/pkgs/pkgs-lib/tests/formats.nix @@ -15,11 +15,11 @@ let in formatSet.generate "test-format-file" config; runBuildTest = name: { drv, expected }: pkgs.runCommandNoCC name {} '' - if diff ${drv} ${builtins.toFile "expected" expected}; then - touch $out + if diff -u '${builtins.toFile "expected" expected}' '${drv}'; then + touch "$out" else - echo "Got: $(cat ${drv})" - echo "Should be: ${expected}" + echo + echo "Got different values than expected; diff above." exit 1 fi ''; @@ -147,9 +147,7 @@ in runBuildTests { foo = "foo" [level1] - [level1.level2] - [level1.level2.level3] level4 = "deep" ''; diff --git a/pkgs/servers/asterisk/default.nix b/pkgs/servers/asterisk/default.nix index b0e7d6aec56..2cf40f3d026 100644 --- a/pkgs/servers/asterisk/default.nix +++ b/pkgs/servers/asterisk/default.nix @@ -104,8 +104,8 @@ in rec { asterisk = asterisk_17; asterisk_13 = common { - version = "13.36.0"; - sha256 = "1p41xrxmzpqmjgvrl7f4vbigiqpmg60fd8bqg5rxbf4lxzpvknnp"; + version = "13.37.0"; + sha256 = "09wc6cqh4f15wm62drzdppwvh7nwgnbwapvz1kgb0qdgixsshn3v"; externals = { "externals_cache/pjproject-2.10.tar.bz2" = pjproject_2_10; "addons/mp3" = mp3-202; @@ -113,8 +113,8 @@ in rec { }; asterisk_16 = common { - version = "16.13.0"; - sha256 = "01nja8hd6jk1966awc2vcz3hl46pvhi797k515q87vzmap1khlp9"; + version = "16.14.0"; + sha256 = "1y120p4jlhg4iwihdxlk64y3y3n8w7y785lwqxsyqg6zviz0ghx6"; externals = { "externals_cache/pjproject-2.10.tar.bz2" = pjproject_2_10; "addons/mp3" = mp3-202; @@ -122,8 +122,8 @@ in rec { }; asterisk_17 = common { - version = "17.7.0"; - sha256 = "0lsglrh3l823200rmkay3pgy42k0fsij610s3s4vd3zv4jjb1g0s"; + version = "17.8.0"; + sha256 = "0xhwh8s8n8xg43gcdkqjj484assva7lm5ah1b306a5nf6j8p9bjy"; externals = { "externals_cache/pjproject-2.10.tar.bz2" = pjproject_2_10; "addons/mp3" = mp3-202; diff --git a/pkgs/servers/atlassian/confluence.nix b/pkgs/servers/atlassian/confluence.nix index e6b0754639c..88b0c843586 100644 --- a/pkgs/servers/atlassian/confluence.nix +++ b/pkgs/servers/atlassian/confluence.nix @@ -8,11 +8,11 @@ assert withMysql -> (mysql_jdbc != null); stdenvNoCC.mkDerivation rec { pname = "atlassian-confluence"; - version = "7.8.0"; + version = "7.8.1"; src = fetchurl { url = "https://product-downloads.atlassian.com/software/confluence/downloads/${pname}-${version}.tar.gz"; - sha256 = "0ivsbhb81v803dsx3c7vj4zbnhx8mr38nn9c45dfdp4lm6shsjq0"; + sha256 = "0jgwd8vb58yzwvnns0kyb0vzgrdvjwzvpk4x8228hrisjxahsm45"; }; buildPhase = '' diff --git a/pkgs/servers/atlassian/crowd.nix b/pkgs/servers/atlassian/crowd.nix index 893f20cf59a..44d9aba582e 100644 --- a/pkgs/servers/atlassian/crowd.nix +++ b/pkgs/servers/atlassian/crowd.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { pname = "atlassian-crowd"; - version = "4.0.2"; + version = "4.2.0"; src = fetchurl { url = "https://www.atlassian.com/software/crowd/downloads/binary/${pname}-${version}.tar.gz"; - sha256 = "1ndg9qb406rd239q7xycc2vdh2jd4fh9wryx1fm9493rxlncx28b"; + sha256 = "1gg4jcwvk4za6j4260dx1vz2dprrnqv8paqf6z86s7ka3y1nx1aj"; }; phases = [ "unpackPhase" "buildPhase" "installPhase" "fixupPhase" ]; diff --git a/pkgs/servers/atlassian/jira.nix b/pkgs/servers/atlassian/jira.nix index ab3746e6e0a..d3c7fb96553 100644 --- a/pkgs/servers/atlassian/jira.nix +++ b/pkgs/servers/atlassian/jira.nix @@ -8,11 +8,11 @@ stdenv.mkDerivation rec { pname = "atlassian-jira"; - version = "8.12.0"; + version = "8.13.0"; src = fetchurl { url = "https://product-downloads.atlassian.com/software/jira/downloads/atlassian-jira-software-${version}.tar.gz"; - sha256 = "149yqj60b35mbvjz7jyh5a3ayh61kvwrz452s0zyb1q3pirj10xq"; + sha256 = "06jq6x24kxwzkwjx05d4q6jyvjpbzqpjlj8arycw8z0w97k83hh9"; }; buildPhase = '' diff --git a/pkgs/servers/bazarr/default.nix b/pkgs/servers/bazarr/default.nix index 92ca263f46f..f220f4002a0 100644 --- a/pkgs/servers/bazarr/default.nix +++ b/pkgs/servers/bazarr/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "bazarr"; - version = "0.9.0.2"; + version = "0.9.0.5"; src = fetchurl { url = "https://github.com/morpheus65535/bazarr/archive/v${version}.tar.gz"; - sha256 = "1lvldklj61hg9h1m0ixaa4zcf4ggdj6wf4myhwwampq4bmr2havj"; + sha256 = "1mm8qghkif48jr7fq28kp7zk5x71zm43isf0a96crpi9qi91sdd5"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/servers/caddy/default.nix b/pkgs/servers/caddy/default.nix index a4e787db739..37f3f1082ec 100644 --- a/pkgs/servers/caddy/default.nix +++ b/pkgs/servers/caddy/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "caddy"; - version = "2.2.0"; + version = "2.2.1"; subPackages = [ "cmd/caddy" ]; @@ -10,7 +10,7 @@ buildGoModule rec { owner = "caddyserver"; repo = pname; rev = "v${version}"; - sha256 = "086zgbwb3v11gik2w024p7m7ywkzn0w27y6hrngd4rxylj7jq7c8"; + sha256 = "065kxnyapjk4r07qrr55zs5w72p8rb8mapq3dh9lr1y13b8sgka9"; }; vendorSha256 = "1rm7v03v6rf9fdqrrl639z8a46cdzswjp8rdpygcsndqfznn5w7b"; diff --git a/pkgs/servers/code-server/default.nix b/pkgs/servers/code-server/default.nix index 91da7e179b4..c62fc072ecb 100644 --- a/pkgs/servers/code-server/default.nix +++ b/pkgs/servers/code-server/default.nix @@ -174,7 +174,7 @@ in stdenv.mkDerivation rec { }; meta = with stdenv.lib; { - description = "Run VS Code on a remote server."; + description = "Run VS Code on a remote server"; longDescription = '' code-server is VS Code running on a remote server, accessible through the browser. diff --git a/pkgs/servers/computing/storm/default.nix b/pkgs/servers/computing/storm/default.nix index b8ae0bc4e85..541e9f6e11b 100644 --- a/pkgs/servers/computing/storm/default.nix +++ b/pkgs/servers/computing/storm/default.nix @@ -7,12 +7,12 @@ stdenv.mkDerivation rec { pname = "apache-storm"; - version = "2.1.0"; + version = "2.2.0"; name = "${pname}-${version}"; src = fetchurl { url = "mirror://apache/storm/${name}/${name}.tar.gz"; - sha256 = "1i3z08rfy7aavshrbrskv9dmlhx1fjgrhhqm0pczfam4vnas8yg2"; + sha256 = "0xc6lfilfkkjyds59b6c770gj21v9srzpln31c9qb3ls6hzic8gn"; }; buildInputs = [ zip unzip ]; diff --git a/pkgs/servers/consul/default.nix b/pkgs/servers/consul/default.nix index b2f9b27e8f8..8912ce84788 100644 --- a/pkgs/servers/consul/default.nix +++ b/pkgs/servers/consul/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "consul"; - version = "1.8.3"; + version = "1.8.5"; rev = "v${version}"; # Note: Currently only release tags are supported, because they have the Consul UI @@ -17,7 +17,7 @@ buildGoModule rec { owner = "hashicorp"; repo = pname; inherit rev; - sha256 = "172m8izv0jqvwxl8nwxdy6x7syp7gn70x4zx41h6ajy4h564l16y"; + sha256 = "1cf3zvb3xh97hz5hav9f1q3b22lwryw6a7gcmm7cphk6bdrdiva5"; }; passthru.tests.consul = nixosTests.consul; @@ -26,7 +26,7 @@ buildGoModule rec { # has a split module structure in one repo subPackages = ["." "connect/certgen"]; - vendorSha256 = "1q4mvmypza2n2kqnri71y9k2qqmb34x3pa7ifql8gwlp8r0bicy7"; + vendorSha256 = "1zz3hhngvx7989m73cp5a9j6spg42hgqd9vs8v332fvcr277lyxj"; doCheck = false; diff --git a/pkgs/servers/dante/default.nix b/pkgs/servers/dante/default.nix index c36ca2f8f50..6be80c491fd 100644 --- a/pkgs/servers/dante/default.nix +++ b/pkgs/servers/dante/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { dontAddDisableDepTrack = stdenv.isDarwin; meta = with stdenv.lib; { - description = "A circuit-level SOCKS client/server that can be used to provide convenient and secure network connectivity."; + description = "A circuit-level SOCKS client/server that can be used to provide convenient and secure network connectivity"; homepage = "https://www.inet.no/dante/"; maintainers = [ maintainers.arobyn ]; license = licenses.bsdOriginal; diff --git a/pkgs/servers/dgraph/default.nix b/pkgs/servers/dgraph/default.nix index c1657dbfec4..e23a1865209 100644 --- a/pkgs/servers/dgraph/default.nix +++ b/pkgs/servers/dgraph/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "dgraph"; - version = "20.07.0"; + version = "20.07.1"; src = fetchFromGitHub { owner = "dgraph-io"; repo = "dgraph"; rev = "v${version}"; - sha256 = "0jcr3imv6vy40c8zdahsfph5mdxkmp2yqapl5982cf0a61gj7brp"; + sha256 = "0vkkzckk6095vkyl5yqhxqbjmvw7jzars8ymgv2zi55n26qzzvf0"; }; - vendorSha256 = "0fb8ba2slav6jk93qwaw715myanivrpajfjwi654n0psr57vc7gf"; + vendorSha256 = "17bfavirx0lpy6ca86y2gm6kf8m388xbpda65dd2w71csbzbc2mi"; doCheck = false; diff --git a/pkgs/servers/dns/bind/default.nix b/pkgs/servers/dns/bind/default.nix index 2afc5da51f5..16d031d49fe 100644 --- a/pkgs/servers/dns/bind/default.nix +++ b/pkgs/servers/dns/bind/default.nix @@ -10,11 +10,11 @@ assert enablePython -> python3 != null; stdenv.mkDerivation rec { pname = "bind"; - version = "9.16.7"; + version = "9.16.8"; src = fetchurl { url = "https://downloads.isc.org/isc/bind9/${version}/${pname}-${version}.tar.xz"; - sha256 = "1l8lhgnkj3fnl1101bs3pzj5gv2x5m9ahvrbyscsc9mxxc91hzcz"; + sha256 = "0ccdbqmpvnxlbrxjsx2w8ir4xh961svzcw7n87n8dglj6rb9r6wy"; }; outputs = [ "out" "lib" "dev" "man" "dnsutils" "host" ]; diff --git a/pkgs/servers/dns/dnsdist/default.nix b/pkgs/servers/dns/dnsdist/default.nix index 3f81ecdf6a9..b15b0bcd19f 100644 --- a/pkgs/servers/dns/dnsdist/default.nix +++ b/pkgs/servers/dns/dnsdist/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { pname = "dnsdist"; - version = "1.5.0"; + version = "1.5.1"; src = fetchurl { url = "https://downloads.powerdns.com/releases/dnsdist-${version}.tar.bz2"; - sha256 = "0n3vy84kczvbwbzmr1d2c9lh3im77gz83wczj0im4zs91kpw81rc"; + sha256 = "1wgv19b6y4fp5x1z54psaaialji2rckl5vdh156kyw47k9r5krya"; }; nativeBuildInputs = [ pkgconfig protobuf ]; diff --git a/pkgs/servers/dns/knot-dns/default.nix b/pkgs/servers/dns/knot-dns/default.nix index ae7ac06e2c7..61faf3bd402 100644 --- a/pkgs/servers/dns/knot-dns/default.nix +++ b/pkgs/servers/dns/knot-dns/default.nix @@ -50,7 +50,7 @@ stdenv.mkDerivation rec { CFLAGS = [ "-O2" "-DNDEBUG" ]; doCheck = true; - doInstallCheck = false; # needs pykeymgr? + doInstallCheck = true; postInstall = '' rm -r "$out"/lib/*.la diff --git a/pkgs/servers/dns/pdns-recursor/default.nix b/pkgs/servers/dns/pdns-recursor/default.nix index 3e62d520be9..df886ffe9dc 100644 --- a/pkgs/servers/dns/pdns-recursor/default.nix +++ b/pkgs/servers/dns/pdns-recursor/default.nix @@ -8,11 +8,11 @@ with stdenv.lib; stdenv.mkDerivation rec { pname = "pdns-recursor"; - version = "4.3.5"; + version = "4.4.0"; src = fetchurl { url = "https://downloads.powerdns.com/releases/pdns-recursor-${version}.tar.bz2"; - sha256 = "0mggqi4588mg6vpgplk9b4ak6msdf279lxkblv563l2vjiyfmfcc"; + sha256 = "12z59xf63iskid08c3y55h238ma2chgvcbks0zprag7i00p97g06"; }; nativeBuildInputs = [ pkgconfig ]; @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { configureFlags = [ "--enable-reproducible" - "--with-systemd" + "--enable-systemd" ]; enableParallelBuilding = true; diff --git a/pkgs/servers/dns/powerdns/default.nix b/pkgs/servers/dns/powerdns/default.nix index cacd5b7c54f..0f9f91ebf86 100644 --- a/pkgs/servers/dns/powerdns/default.nix +++ b/pkgs/servers/dns/powerdns/default.nix @@ -1,29 +1,28 @@ { stdenv, fetchurl, pkgconfig, nixosTests , boost, libyamlcpp, libsodium, sqlite, protobuf, openssl, systemd -, mysql57, postgresql, lua, openldap, geoip, curl, opendbx, unixODBC +, mysql57, postgresql, lua, openldap, geoip, curl, unixODBC }: stdenv.mkDerivation rec { pname = "powerdns"; - version = "4.2.3"; + version = "4.3.1"; src = fetchurl { url = "https://downloads.powerdns.com/releases/pdns-${version}.tar.bz2"; - sha256 = "1vf03hssk9rfhvhzfc5ca2r4ly67wq0czr0ysvdrk8pnb0yk6yfi"; + sha256 = "0if27znz528sir52y9i4gcfhdsym7yxiwjgffy9lpscf1426q56m"; }; nativeBuildInputs = [ pkgconfig ]; buildInputs = [ boost mysql57.connector-c postgresql lua openldap sqlite protobuf geoip - libyamlcpp libsodium curl opendbx unixODBC openssl systemd + libyamlcpp libsodium curl unixODBC openssl systemd ]; # nix destroy with-modules arguments, when using configureFlags preConfigure = '' configureFlagsArray=( - "--with-modules=bind gmysql geoip godbc gpgsql gsqlite3 ldap lua mydns opendbx pipe random remote" + "--with-modules=bind gmysql geoip godbc gpgsql gsqlite3 ldap lua2 pipe random remote" --with-sqlite3 - --with-socketdir=/var/lib/powerdns --with-libcrypto=${openssl.dev} --with-libsodium --enable-tools diff --git a/pkgs/servers/gerbera/default.nix b/pkgs/servers/gerbera/default.nix index 93bd7778d08..c3f36a75923 100644 --- a/pkgs/servers/gerbera/default.nix +++ b/pkgs/servers/gerbera/default.nix @@ -21,13 +21,13 @@ let optionOnOff = option: if option then "on" else "off"; in stdenv.mkDerivation rec { pname = "gerbera"; - version = "1.6.1"; + version = "1.6.4"; src = fetchFromGitHub { repo = "gerbera"; owner = "gerbera"; rev = "v${version}"; - sha256 = "sha256:05ca27r9sidbl7xns9hcdan8wgjrpg26n1wq1vp247c9bqhpyql8"; + sha256 = "0vkgbw2ibvfr0zffnmmws7389msyqsiw8anfad6awvkda3z3rxjm"; }; cmakeFlags = [ @@ -64,7 +64,7 @@ in stdenv.mkDerivation rec { meta = with stdenv.lib; { - homepage = https://docs.gerbera.io/; + homepage = "https://docs.gerbera.io/"; description = "UPnP Media Server for 2020"; longDescription = '' Gerbera is a Mediatomb fork. diff --git a/pkgs/servers/gotify/source-sha.nix b/pkgs/servers/gotify/source-sha.nix index 8f20c05407c..5e3531497d4 100644 --- a/pkgs/servers/gotify/source-sha.nix +++ b/pkgs/servers/gotify/source-sha.nix @@ -1 +1 @@ -"1v123j9d4psbg7pnqnc7bc9li2qyahapjbimmf0qpfxacx968gm9" +"0d82girrhw9k68f5kcy8d0bl0bnsq651l4bb60xmqrilylp7qgmp" diff --git a/pkgs/servers/gotify/vendor-sha.nix b/pkgs/servers/gotify/vendor-sha.nix index f9e648a957e..4536d51be0c 100644 --- a/pkgs/servers/gotify/vendor-sha.nix +++ b/pkgs/servers/gotify/vendor-sha.nix @@ -1 +1 @@ -"1in4gzmrgb6z7p5fnz33f88g5l0vki2xlxlllk5wy9icp4h3h9sd" +"15y5migjf68fwv21ihkcj3r7mm4cgjbghvwvb9l7mhysnc8kdk8j" diff --git a/pkgs/servers/gotify/version.nix b/pkgs/servers/gotify/version.nix index 0018815632b..5783e8bd78f 100644 --- a/pkgs/servers/gotify/version.nix +++ b/pkgs/servers/gotify/version.nix @@ -1 +1 @@ -"2.0.18" +"2.0.20" diff --git a/pkgs/servers/hitch/default.nix b/pkgs/servers/hitch/default.nix index 89aa63f35bd..d049317c031 100644 --- a/pkgs/servers/hitch/default.nix +++ b/pkgs/servers/hitch/default.nix @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { passthru.tests.hitch = nixosTests.hitch; meta = with stdenv.lib; { - description = "Hitch is a libev-based high performance SSL/TLS proxy by Varnish Software"; + description = "Libev-based high performance SSL/TLS proxy by Varnish Software"; homepage = "https://hitch-tls.org/"; license = licenses.bsd2; maintainers = [ maintainers.jflanglois ]; diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix index 8e7533dbfb9..326cc480fdd 100644 --- a/pkgs/servers/home-assistant/component-packages.nix +++ b/pkgs/servers/home-assistant/component-packages.nix @@ -2,16 +2,17 @@ # Do not edit! { - version = "0.116.2"; + version = "0.117.0"; components = { "abode" = ps: with ps; [ abodepy ]; - "accuweather" = ps: with ps; [ ]; # missing inputs: accuweather + "accuweather" = ps: with ps; [ accuweather ]; "acer_projector" = ps: with ps; [ pyserial ]; "acmeda" = ps: with ps; [ ]; # missing inputs: aiopulse "actiontec" = ps: with ps; [ ]; "adguard" = ps: with ps; [ adguardhome ]; "ads" = ps: with ps; [ pyads ]; - "aftership" = ps: with ps; [ ]; # missing inputs: pyaftership + "advantage_air" = ps: with ps; [ ]; # missing inputs: advantage_air + "aftership" = ps: with ps; [ pyaftership ]; "agent_dvr" = ps: with ps; [ ]; # missing inputs: agent-py "air_quality" = ps: with ps; [ ]; "airly" = ps: with ps; [ ]; # missing inputs: airly @@ -91,7 +92,6 @@ "bme680" = ps: with ps; [ ]; # missing inputs: bme680 smbus-cffi "bmp280" = ps: with ps; [ ]; # missing inputs: RPi.GPIO adafruit-circuitpython-bmp280 "bmw_connected_drive" = ps: with ps; [ ]; # missing inputs: bimmer_connected - "bom" = ps: with ps; [ ]; # missing inputs: bomradarloop "bond" = ps: with ps; [ ]; # missing inputs: bond-api "braviatv" = ps: with ps; [ bravia-tv ]; "broadlink" = ps: with ps; [ broadlink ]; @@ -107,7 +107,7 @@ "calendar" = ps: with ps; [ aiohttp-cors ]; "camera" = ps: with ps; [ aiohttp-cors ]; "canary" = ps: with ps; [ ha-ffmpeg ]; # missing inputs: py-canary - "cast" = ps: with ps; [ aiohttp-cors hass-nabucasa mutagen PyChromecast zeroconf ]; + "cast" = ps: with ps; [ aiohttp-cors hass-nabucasa mutagen plexapi plexauth plexwebsocket PyChromecast pysonos zeroconf ]; "cert_expiry" = ps: with ps; [ ]; "channels" = ps: with ps; [ ]; # missing inputs: pychannels "circuit" = ps: with ps; [ ]; # missing inputs: circuit-webhook @@ -163,7 +163,7 @@ "device_automation" = ps: with ps; [ ]; "device_sun_light_trigger" = ps: with ps; [ aiohttp-cors pillow ]; "device_tracker" = ps: with ps; [ ]; - "devolo_home_control" = ps: with ps; [ ]; # missing inputs: devolo-home-control-api + "devolo_home_control" = ps: with ps; [ aiohttp-cors zeroconf ]; # missing inputs: devolo-home-control-api "dexcom" = ps: with ps; [ ]; # missing inputs: pydexcom "dht" = ps: with ps; [ ]; # missing inputs: Adafruit-DHT "dialogflow" = ps: with ps; [ aiohttp-cors ]; @@ -301,7 +301,7 @@ "gitlab_ci" = ps: with ps; [ python-gitlab ]; "gitter" = ps: with ps; [ ]; # missing inputs: gitterpy "glances" = ps: with ps; [ ]; # missing inputs: glances_api - "gntp" = ps: with ps; [ ]; # missing inputs: gntp + "gntp" = ps: with ps; [ gntp ]; "goalfeed" = ps: with ps; [ ]; # missing inputs: pysher "goalzero" = ps: with ps; [ ]; # missing inputs: goalzero "gogogate2" = ps: with ps; [ ]; # missing inputs: gogogate2-api @@ -318,6 +318,7 @@ "gpsd" = ps: with ps; [ ]; # missing inputs: gps3 "gpslogger" = ps: with ps; [ aiohttp-cors ]; "graphite" = ps: with ps; [ ]; + "gree" = ps: with ps; [ ]; # missing inputs: greeclimate "greeneye_monitor" = ps: with ps; [ ]; # missing inputs: greeneye_monitor "greenwave" = ps: with ps; [ ]; # missing inputs: greenwavereality "griddy" = ps: with ps; [ ]; # missing inputs: griddypower @@ -470,7 +471,7 @@ "mastodon" = ps: with ps; [ ]; # missing inputs: Mastodon.py "matrix" = ps: with ps; [ matrix-client ]; "maxcube" = ps: with ps; [ ]; # missing inputs: maxcube-api - "mcp23017" = ps: with ps; [ ]; # missing inputs: RPi.GPIO adafruit-blinka adafruit-circuitpython-mcp230xx + "mcp23017" = ps: with ps; [ ]; # missing inputs: RPi.GPIO adafruit-circuitpython-mcp230xx "media_extractor" = ps: with ps; [ aiohttp-cors youtube-dl-light ]; "media_player" = ps: with ps; [ aiohttp-cors ]; "media_source" = ps: with ps; [ aiohttp-cors ]; @@ -527,7 +528,7 @@ "nederlandse_spoorwegen" = ps: with ps; [ ]; # missing inputs: nsapi "nello" = ps: with ps; [ ]; # missing inputs: pynello "ness_alarm" = ps: with ps; [ ]; # missing inputs: nessclient - "nest" = ps: with ps; [ python-nest ]; + "nest" = ps: with ps; [ aiohttp-cors python-nest ]; # missing inputs: google-nest-sdm "netatmo" = ps: with ps; [ aiohttp-cors hass-nabucasa pyatmo ]; "netdata" = ps: with ps; [ ]; # missing inputs: netdata "netgear" = ps: with ps; [ ]; # missing inputs: pynetgear @@ -568,9 +569,9 @@ "ombi" = ps: with ps; [ ]; # missing inputs: pyombi "omnilogic" = ps: with ps; [ ]; # missing inputs: omnilogic "onboarding" = ps: with ps; [ aiohttp-cors pillow ]; # missing inputs: home-assistant-frontend - "onewire" = ps: with ps; [ ]; # missing inputs: pyownet + "onewire" = ps: with ps; [ ]; # missing inputs: pi1wire pyownet "onkyo" = ps: with ps; [ onkyo-eiscp ]; - "onvif" = ps: with ps; [ ha-ffmpeg ]; # missing inputs: WSDiscovery onvif-zeep-async + "onvif" = ps: with ps; [ ha-ffmpeg zeep ]; # missing inputs: WSDiscovery onvif-zeep-async "openalpr_cloud" = ps: with ps; [ ]; "openalpr_local" = ps: with ps; [ ]; "opencv" = ps: with ps; [ numpy ]; # missing inputs: opencv-python-headless @@ -622,6 +623,7 @@ "point" = ps: with ps; [ aiohttp-cors ]; # missing inputs: pypoint "poolsense" = ps: with ps; [ ]; # missing inputs: poolsense "powerwall" = ps: with ps; [ ]; # missing inputs: tesla-powerwall + "profiler" = ps: with ps; [ pyprof2calltree ]; "progettihwsw" = ps: with ps; [ ]; # missing inputs: progettihwsw "proliphix" = ps: with ps; [ ]; # missing inputs: proliphix "prometheus" = ps: with ps; [ aiohttp-cors prometheus_client ]; @@ -688,6 +690,7 @@ "rpi_rf" = ps: with ps; [ ]; # missing inputs: rpi-rf "rss_feed_template" = ps: with ps; [ aiohttp-cors ]; "rtorrent" = ps: with ps; [ ]; + "ruckus_unleashed" = ps: with ps; [ ]; # missing inputs: pyruckus "russound_rio" = ps: with ps; [ ]; # missing inputs: russound_rio "russound_rnet" = ps: with ps; [ ]; # missing inputs: russound "sabnzbd" = ps: with ps; [ aiohttp-cors netdisco zeroconf ]; # missing inputs: pysabnzbd @@ -809,6 +812,7 @@ "tank_utility" = ps: with ps; [ ]; # missing inputs: tank_utility "tankerkoenig" = ps: with ps; [ ]; # missing inputs: pytankerkoenig "tapsaff" = ps: with ps; [ ]; # missing inputs: tapsaff + "tasmota" = ps: with ps; [ aiohttp-cors paho-mqtt ]; # missing inputs: hatasmota "tautulli" = ps: with ps; [ ]; # missing inputs: pytautulli "tcp" = ps: with ps; [ ]; "ted5000" = ps: with ps; [ xmltodict ]; @@ -922,7 +926,7 @@ "wink" = ps: with ps; [ aiohttp-cors ]; # missing inputs: pubnubsub-handler python-wink "wirelesstag" = ps: with ps; [ ]; # missing inputs: wirelesstagpy "withings" = ps: with ps; [ aiohttp-cors ]; # missing inputs: withings-api - "wled" = ps: with ps; [ ]; # missing inputs: wled + "wled" = ps: with ps; [ wled ]; "wolflink" = ps: with ps; [ ]; # missing inputs: wolf_smartset "workday" = ps: with ps; [ holidays ]; "worldclock" = ps: with ps; [ ]; @@ -932,6 +936,7 @@ "wunderground" = ps: with ps; [ ]; "x10" = ps: with ps; [ ]; "xbee" = ps: with ps; [ ]; # missing inputs: xbee-helper + "xbox" = ps: with ps; [ aiohttp-cors ]; # missing inputs: xbox-webapi "xbox_live" = ps: with ps; [ ]; # missing inputs: xboxapi "xeoma" = ps: with ps; [ ]; # missing inputs: pyxeoma "xfinity" = ps: with ps; [ ]; # missing inputs: xfinity-gateway @@ -950,13 +955,13 @@ "yeelightsunflower" = ps: with ps; [ ]; # missing inputs: yeelightsunflower "yessssms" = ps: with ps; [ ]; # missing inputs: YesssSMS "yi" = ps: with ps; [ aioftp ha-ffmpeg ]; - "zabbix" = ps: with ps; [ ]; # missing inputs: pyzabbix + "zabbix" = ps: with ps; [ ]; # missing inputs: py-zabbix "zamg" = ps: with ps; [ ]; "zengge" = ps: with ps; [ ]; # missing inputs: zengge "zeroconf" = ps: with ps; [ aiohttp-cors zeroconf ]; "zerproc" = ps: with ps; [ ]; # missing inputs: pyzerproc "zestimate" = ps: with ps; [ xmltodict ]; - "zha" = ps: with ps; [ bellows pyserial zha-quirks zigpy-cc zigpy-deconz zigpy-xbee zigpy-zigate zigpy ]; # missing inputs: zigpy-znp + "zha" = ps: with ps; [ bellows pyserial zha-quirks zigpy-cc zigpy-deconz zigpy-xbee zigpy-zigate zigpy-znp zigpy ]; "zhong_hong" = ps: with ps; [ ]; # missing inputs: zhong_hong_hvac "ziggo_mediabox_xl" = ps: with ps; [ ]; # missing inputs: ziggo-mediabox-xl "zodiac" = ps: with ps; [ ]; diff --git a/pkgs/servers/home-assistant/default.nix b/pkgs/servers/home-assistant/default.nix index 90b76ef3984..98f5fe94324 100644 --- a/pkgs/servers/home-assistant/default.nix +++ b/pkgs/servers/home-assistant/default.nix @@ -67,7 +67,7 @@ let extraBuildInputs = extraPackages py.pkgs; # Don't forget to run parse-requirements.py after updating - hassVersion = "0.116.2"; + hassVersion = "0.117.0"; in with py.pkgs; buildPythonApplication rec { pname = "homeassistant"; @@ -83,28 +83,20 @@ in with py.pkgs; buildPythonApplication rec { owner = "home-assistant"; repo = "core"; rev = version; - sha256 = "0q4yqcikkph05mkvg160664lyf0f1qkpm7yc6kh9hgigambxi0yp"; + sha256 = "1f5axspj5hffmaqhpmrrflyd0c62lww36yvd2wr999yix7jhsfnc"; }; - patches = [ - (fetchpatch { - # Fix group tests when run in parallel, remove >= 0.117.0 - url = "https://github.com/home-assistant/core/pull/41446/commits/c79dc478b7136b6df43707bf0ad6b53419c8a909.patch"; - sha256 = "1cl81swq960vd2f733dcqq60c0jjzrkm0l2sibcblhmyw597b4vj"; - }) - ]; - postPatch = '' substituteInPlace setup.py \ --replace "bcrypt==3.1.7" "bcrypt>=3.1.7" \ - --replace "cryptography==2.9.2" "cryptography" \ + --replace "cryptography==3.2.0" "cryptography" \ --replace "ruamel.yaml==0.15.100" "ruamel.yaml>=0.15.100" substituteInPlace tests/test_config.py --replace '"/usr"' '"/build/media"' ''; propagatedBuildInputs = [ # From setup.py - aiohttp astral async-timeout attrs bcrypt certifi ciso8601 jinja2 + aiohttp astral async-timeout attrs bcrypt certifi ciso8601 httpx jinja2 pyjwt cryptography pip python-slugify pytz pyyaml requests ruamel_yaml setuptools voluptuous voluptuous-serialize yarl # From default_config. frontend, http, image, mobile_app and recorder components as well as @@ -198,7 +190,7 @@ in with py.pkgs; buildPythonApplication rec { meta = with lib; { homepage = "https://home-assistant.io/"; - description = "Open-source home automation platform running on Python 3"; + description = "Open source home automation that puts local control and privacy first"; license = licenses.asl20; maintainers = with maintainers; [ dotlambda globin mic92 hexa ]; }; diff --git a/pkgs/servers/home-assistant/frontend.nix b/pkgs/servers/home-assistant/frontend.nix index 8dd99d94ee0..2ca94066dbc 100644 --- a/pkgs/servers/home-assistant/frontend.nix +++ b/pkgs/servers/home-assistant/frontend.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { # the frontend version corresponding to a specific home-assistant version can be found here # https://github.com/home-assistant/home-assistant/blob/master/homeassistant/components/frontend/manifest.json pname = "home-assistant-frontend"; - version = "20201001.2"; + version = "20201021.3"; src = fetchPypi { inherit pname version; - sha256 = "1wyac980d8j8bk4bzh9y3a5c4xqfn3062wj5m45kwsx1f5rfx26j"; + sha256 = "04z8rvmnpmy7xx90pvqcr58hsxjsc10mrrjcx7ppspglb91b9cpb"; }; # no Python tests implemented diff --git a/pkgs/servers/http/couchdb/3.nix b/pkgs/servers/http/couchdb/3.nix index 18271e82a8f..bb856d7aa07 100644 --- a/pkgs/servers/http/couchdb/3.nix +++ b/pkgs/servers/http/couchdb/3.nix @@ -3,14 +3,14 @@ stdenv.mkDerivation rec { pname = "couchdb"; - version = "3.1.0"; + version = "3.1.1"; # when updating this, please consider bumping the erlang/OTP version # in all-packages.nix src = fetchurl { url = "mirror://apache/couchdb/source/${version}/apache-${pname}-${version}.tar.gz"; - sha256 = "1vgqj3zsrkdqgnwzji3mqkapnfd6kq466f5xnya0fvzzl6bcfrs8"; + sha256 = "18wcqxrv2bz88xadkqpqznprrxmcmwr0g6k895xrm8rbp9mpdzlg"; }; buildInputs = [ erlang icu openssl spidermonkey_68 (python3.withPackages(ps: with ps; [ requests ]))]; diff --git a/pkgs/servers/http/tengine/default.nix b/pkgs/servers/http/tengine/default.nix index f3cae597ef9..cc6363e75d1 100644 --- a/pkgs/servers/http/tengine/default.nix +++ b/pkgs/servers/http/tengine/default.nix @@ -112,7 +112,7 @@ stdenv.mkDerivation rec { ''; meta = { - description = "A web server based on Nginx and has many advanced features, originated by Taobao."; + description = "A web server based on Nginx and has many advanced features, originated by Taobao"; homepage = "https://tengine.taobao.org"; license = licenses.bsd2; platforms = platforms.all; diff --git a/pkgs/servers/http/unit/default.nix b/pkgs/servers/http/unit/default.nix index 27f45fe6e47..cbe17cdb806 100644 --- a/pkgs/servers/http/unit/default.nix +++ b/pkgs/servers/http/unit/default.nix @@ -84,7 +84,7 @@ in stdenv.mkDerivation rec { passthru.tests.unit-php = nixosTests.unit-php; meta = { - description = "Dynamic web and application server, designed to run applications in multiple languages."; + description = "Dynamic web and application server, designed to run applications in multiple languages"; homepage = "https://unit.nginx.org/"; license = licenses.asl20; platforms = platforms.linux; diff --git a/pkgs/servers/icingaweb2/default.nix b/pkgs/servers/icingaweb2/default.nix index 6414d445a00..eaf16e38804 100644 --- a/pkgs/servers/icingaweb2/default.nix +++ b/pkgs/servers/icingaweb2/default.nix @@ -1,12 +1,12 @@ { stdenv, lib, fetchFromGitHub, makeWrapper, php }: with lib; stdenv.mkDerivation rec { pname = "icingaweb2"; - version = "2.8.1"; + version = "2.8.2"; src = fetchFromGitHub { owner = "Icinga"; repo = "icingaweb2"; rev = "v${version}"; - sha256 = "1hmw681a2qv578npr389szkxpbhcfqzq9c1wzkbjjm3avnvi37mf"; + sha256 = "1zrni1hzblaangiqm7iqbvg2h9rdc2l3pzzymz52r7mri4qnr4s8"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/servers/jackett/default.nix b/pkgs/servers/jackett/default.nix index 67975efb4a1..3058ef5a4a6 100644 --- a/pkgs/servers/jackett/default.nix +++ b/pkgs/servers/jackett/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "jackett"; - version = "0.16.1670"; + version = "0.16.1883"; src = fetchurl { url = "https://github.com/Jackett/Jackett/releases/download/v${version}/Jackett.Binaries.Mono.tar.gz"; - sha256 = "1jjvk2y56j6hx4588jsdvj2yk7slacn49z09vhw9vf9nkddx1mgb"; + sha256 = "1l16zzjyvwq6rd4q6dg4m0a81fiw50c7naksa43g3yhv7wg7wfll"; }; nativeBuildInputs = [ makeWrapper ]; @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "API Support for your favorite torrent trackers."; + description = "API Support for your favorite torrent trackers"; homepage = "https://github.com/Jackett/Jackett/"; license = licenses.gpl2; maintainers = with maintainers; [ edwtjo nyanloutre purcell ]; diff --git a/pkgs/servers/limesurvey/default.nix b/pkgs/servers/limesurvey/default.nix index 5f5db310bf3..023e1bbd2cc 100644 --- a/pkgs/servers/limesurvey/default.nix +++ b/pkgs/servers/limesurvey/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "limesurvey"; - version = "3.23.0+200813"; + version = "3.23.7+201006"; src = fetchFromGitHub { owner = "LimeSurvey"; repo = "LimeSurvey"; rev = version; - sha256 = "0r260z40g6b2bsfzxgfwdffbs17bl784xsc67n7q8222rs601hxf"; + sha256 = "19p978p0flknsg3iqlrrbr76qsk5ha2a84nxywqsvjrjvqrh5jrc"; }; phpConfig = writeText "config.php" '' diff --git a/pkgs/servers/livepeer/default.nix b/pkgs/servers/livepeer/default.nix index 60122d6b451..5430c7ddf06 100644 --- a/pkgs/servers/livepeer/default.nix +++ b/pkgs/servers/livepeer/default.nix @@ -4,16 +4,16 @@ buildGoModule rec { pname = "livepeer"; - version = "0.5.10"; + version = "0.5.11"; runVend = true; - vendorSha256 = "0i5977skw4b209zvdvgvzfnhqb574067mmfk2gf9y590lgnr86f7"; + vendorSha256 = "13cgwpf3v4vlvb0mgdxsdybpghx1cp3fzkdwmq8b193a8dcl8s63"; src = fetchFromGitHub { owner = "livepeer"; repo = "go-livepeer"; rev = "v${version}"; - sha256 = "0qccvnk2yyly7ha9lkcpd6zj5n9xnhdjkl3nllb9xziidsq6p65h"; + sha256 = "12vbnl74z6jk77bnws8a5z5n7bnhkbb4ngzxfir5l3g9zrpsc5p3"; }; # livepeer_cli has a vendoring problem diff --git a/pkgs/servers/mail/rspamd/default.nix b/pkgs/servers/mail/rspamd/default.nix index 7f54b97a8e8..995dbf2e16d 100644 --- a/pkgs/servers/mail/rspamd/default.nix +++ b/pkgs/servers/mail/rspamd/default.nix @@ -4,19 +4,20 @@ , withBlas ? true , withHyperscan ? stdenv.isx86_64 , withLuaJIT ? stdenv.isx86_64 +, nixosTests }: assert withHyperscan -> stdenv.isx86_64; stdenv.mkDerivation rec { pname = "rspamd"; - version = "2.5"; + version = "2.6"; src = fetchFromGitHub { owner = "rspamd"; repo = "rspamd"; rev = version; - sha256 = "01fhh07dddc6v7a5kq6h1z221vl0d4af43cchqkf54ycyxxxw06h"; + sha256 = "0vwa7k2s2bkfb8w78z5izkd6ywjbzqysb0grls898y549hm8ii70"; }; nativeBuildInputs = [ cmake pkgconfig perl ]; @@ -34,6 +35,8 @@ stdenv.mkDerivation rec { "-DENABLE_JEMALLOC=ON" ] ++ lib.optional withHyperscan "-DENABLE_HYPERSCAN=ON"; + passthru.tests.rspamd = nixosTests.rspamd; + meta = with stdenv.lib; { homepage = "https://rspamd.com"; license = licenses.asl20; diff --git a/pkgs/servers/matrix-synapse/default.nix b/pkgs/servers/matrix-synapse/default.nix index 8b119994ad9..04700a9e209 100644 --- a/pkgs/servers/matrix-synapse/default.nix +++ b/pkgs/servers/matrix-synapse/default.nix @@ -1,5 +1,6 @@ { lib, stdenv, python3, openssl , enableSystemd ? stdenv.isLinux, nixosTests +, enableRedis ? false }: with python3.pkgs; @@ -9,11 +10,11 @@ let in buildPythonApplication rec { pname = "matrix-synapse"; - version = "1.21.0"; + version = "1.22.0"; src = fetchPypi { inherit pname version; - sha256 = "0iip311xbzc984gzpmri5fabpb3b2ck1ywv5378pk90m02yybgi5"; + sha256 = "0dl4a5zirrjabbfibl9vj4zb16md11kqkz2v9l299gxbwwvzqc39"; }; patches = [ @@ -53,13 +54,15 @@ buildPythonApplication rec { typing-extensions authlib pyjwt - ] ++ lib.optional enableSystemd systemd; + ] ++ lib.optional enableSystemd systemd + ++ lib.optional enableRedis hiredis; checkInputs = [ mock parameterized openssl ]; doCheck = !stdenv.isDarwin; checkPhase = '' + ${lib.optionalString (!enableRedis) "rm -r tests/replication # these tests need the optional dependency 'hiredis'"} PYTHONPATH=".:$PYTHONPATH" ${python3.interpreter} -m twisted.trial tests ''; diff --git a/pkgs/servers/memcached/default.nix b/pkgs/servers/memcached/default.nix index 58276ff8632..b6c6031f150 100644 --- a/pkgs/servers/memcached/default.nix +++ b/pkgs/servers/memcached/default.nix @@ -17,7 +17,8 @@ stdenv.mkDerivation rec { hardeningEnable = [ "pie" ]; - NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.isDarwin "-Wno-error"; + NIX_CFLAGS_COMPILE = [ "-Wno-error=deprecated-declarations" ] + ++ stdenv.lib.optional stdenv.isDarwin "-Wno-error"; meta = with stdenv.lib; { description = "A distributed memory object caching system"; diff --git a/pkgs/servers/metabase/default.nix b/pkgs/servers/metabase/default.nix index 2298ecc84ce..6d75011575a 100644 --- a/pkgs/servers/metabase/default.nix +++ b/pkgs/servers/metabase/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "metabase"; - version = "0.36.4"; + version = "0.37.0.2"; src = fetchurl { url = "http://downloads.metabase.com/v${version}/metabase.jar"; - sha256 = "1k6f22ii9vga8j9jxipl1r55msxgag0lbkjxw7vf285z1hdhwylq"; + sha256 = "7f95f9823bdf567d4044925e9f14c820a6b4a176624ec027d911cac33813bf96"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/servers/monitoring/do-agent/default.nix b/pkgs/servers/monitoring/do-agent/default.nix index bbfdc97b6dc..d7c7e042981 100644 --- a/pkgs/servers/monitoring/do-agent/default.nix +++ b/pkgs/servers/monitoring/do-agent/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "do-agent"; - version = "3.6.0"; + version = "3.7.1"; src = fetchFromGitHub { owner = "digitalocean"; repo = "do-agent"; rev = "${version}"; - sha256 = "024fs2yln2i4s5aihwlz103w5wvmcwqx7hz9q3fw3dm18k3fjmn2"; + sha256 = "16mmh1kz6zbncfisd9qnb3ssgpkcb4hb7700jlzbdjqxyjmy0qsf"; }; buildFlagsArray = '' diff --git a/pkgs/servers/monitoring/grafana/default.nix b/pkgs/servers/monitoring/grafana/default.nix index ed9c579d9c3..fe915e7adc0 100644 --- a/pkgs/servers/monitoring/grafana/default.nix +++ b/pkgs/servers/monitoring/grafana/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "grafana"; - version = "7.2.0"; + version = "7.3.0"; excludedPackages = [ "release_publisher" ]; @@ -10,15 +10,15 @@ buildGoModule rec { rev = "v${version}"; owner = "grafana"; repo = "grafana"; - sha256 = "1pzsg6kr5kq5767plji7m6ssy2z9jxjp9zp182baxjd634mmclcx"; + sha256 = "0sxl06xaz474ir94ng0iak57qpcbh19hs3yjh1g44vf52k5cs70i"; }; srcStatic = fetchurl { url = "https://dl.grafana.com/oss/release/grafana-${version}.linux-amd64.tar.gz"; - sha256 = "003sn06r94m68b6l91cjr3xr3i7hq54ay0gb562i6y5swrfkqqwz"; + sha256 = "1338x2sj11mzqqpb43dw2lxjpnv9q7zrwksyvj8ghjp4fad4pi9g"; }; - vendorSha256 = "1b33kibvfa1qgalqb9ngxqimcn92cy8sllsc81wc9gmz4giz9mn1"; + vendorSha256 = "0shaxm2y5i29rb0k5bfpcsxbw3ap913l1rb5qbr9hrx7l142dbx8"; postPatch = '' substituteInPlace pkg/cmd/grafana-server/main.go \ diff --git a/pkgs/servers/monitoring/longview/default.nix b/pkgs/servers/monitoring/longview/default.nix index c5c284b7f02..10f0f248a80 100644 --- a/pkgs/servers/monitoring/longview/default.nix +++ b/pkgs/servers/monitoring/longview/default.nix @@ -59,7 +59,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://www.linode.com/longview"; - description = "Longview collects all of your system-level metrics and sends them to Linode"; + description = "Collects all of your system-level metrics and sends them to Linode"; license = licenses.gpl2Plus; maintainers = [ maintainers.rvl ]; inherit version; diff --git a/pkgs/servers/monitoring/mtail/default.nix b/pkgs/servers/monitoring/mtail/default.nix index 8bd222ddbeb..4c5da36f00e 100644 --- a/pkgs/servers/monitoring/mtail/default.nix +++ b/pkgs/servers/monitoring/mtail/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "mtail"; - version = "3.0.0-rc36"; + version = "3.0.0-rc38"; src = fetchFromGitHub { owner = "google"; repo = "mtail"; rev = "v${version}"; - sha256 = "1xdpjzcr143f7430wl9l6zzq9yhbkirr3fbfw60f10zpglrcx8a4"; + sha256 = "0a9xwv8c4ivpyh1hm3nzssnqpr4c6br0qb27mz3sy6fp2p46c0ms"; }; - vendorSha256 = "02fnvy897cygmipc5snza556qihjwrp1lf9qi9f5dzarphd6d0pw"; + vendorSha256 = "03hicp3h4jrq7ihirpcmgkk5siiny3w2wnwhibaf36j9xllmf57f"; doCheck = false; diff --git a/pkgs/servers/monitoring/plugins/default.nix b/pkgs/servers/monitoring/plugins/default.nix index 8f1c08bebd8..8edac875a3a 100644 --- a/pkgs/servers/monitoring/plugins/default.nix +++ b/pkgs/servers/monitoring/plugins/default.nix @@ -77,7 +77,7 @@ _EOF ''; meta = { - description = "Official monitoring plugins for Nagios/Icinga/Sensu and others."; + description = "Official monitoring plugins for Nagios/Icinga/Sensu and others"; homepage = "https://www.monitoring-plugins.org"; license = licenses.gpl2; platforms = platforms.linux; diff --git a/pkgs/servers/monitoring/plugins/labs_consol_de.nix b/pkgs/servers/monitoring/plugins/labs_consol_de.nix index 8464d4f1b2f..e7a6fa6e400 100644 --- a/pkgs/servers/monitoring/plugins/labs_consol_de.nix +++ b/pkgs/servers/monitoring/plugins/labs_consol_de.nix @@ -55,7 +55,7 @@ in { pname = "check_mssql_health"; version = "2.6.4.15"; sha256 = "12z0b3c2p18viy7s93r6bbl8fvgsqh80136d07118qhxshp1pwxg"; - description = "Check plugin for Microsoft SQL Server."; + description = "Check plugin for Microsoft SQL Server"; buildInputs = [ perlPackages.DBDsybase ]; }; @@ -63,7 +63,7 @@ in { pname = "check_nwc_health"; version = "7.10.0.6"; sha256 = "092rhaqnk3403z0y60x38vgh65gcia3wrd6gp8mr7wszja38kxv2"; - description = "Check plugin for network equipment."; + description = "Check plugin for network equipment"; buildInputs = [ perlPackages.NetSNMP ]; }; @@ -71,7 +71,7 @@ in { pname = "check_ups_health"; version = "2.8.3.3"; sha256 = "0qc2aglppwr9ms4p53kh9nr48625sqrbn46xs0k9rx5sv8hil9hm"; - description = "Check plugin for UPSs."; + description = "Check plugin for UPSs"; buildInputs = [ perlPackages.NetSNMP ]; }; } diff --git a/pkgs/servers/monitoring/prometheus/blackbox-exporter.nix b/pkgs/servers/monitoring/prometheus/blackbox-exporter.nix index 45d70d47d6e..e1fd31c3202 100644 --- a/pkgs/servers/monitoring/prometheus/blackbox-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/blackbox-exporter.nix @@ -2,7 +2,7 @@ buildGoPackage rec { pname = "blackbox_exporter"; - version = "0.17.0"; + version = "0.18.0"; rev = version; goPackagePath = "github.com/prometheus/blackbox_exporter"; @@ -11,7 +11,7 @@ buildGoPackage rec { rev = "v${version}"; owner = "prometheus"; repo = "blackbox_exporter"; - sha256 = "00ganz6wfwyb9avkp2fr4bwpzvfiffsmpgndl8zp80bk7m1b3mnz"; + sha256 = "1h4s0ww1drh14slrj9m7mx224qx9c6hyjav8sj959r75902i9491"; }; # dns-lookup is performed for the tests diff --git a/pkgs/servers/monitoring/prometheus/consul-exporter.nix b/pkgs/servers/monitoring/prometheus/consul-exporter.nix index ad6d366a221..20281313d0e 100644 --- a/pkgs/servers/monitoring/prometheus/consul-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/consul-exporter.nix @@ -2,7 +2,7 @@ buildGoPackage rec { pname = "consul_exporter"; - version = "0.6.0"; + version = "0.7.1"; goPackagePath = "github.com/prometheus/consul_exporter"; @@ -10,7 +10,7 @@ buildGoPackage rec { owner = "prometheus"; repo = "consul_exporter"; rev = "v${version}"; - sha256 = "0s30blb4d8zw9f6x7dsnc1rxmxzsaih9w3xxxgr6c9xsm347mj86"; + sha256 = "16ibafcbpiplsh1awcvblzzf2cbr4baf8wiwpdpibgmcwwf9m5ya"; }; meta = with stdenv.lib; { diff --git a/pkgs/servers/monitoring/prometheus/keylight-exporter.nix b/pkgs/servers/monitoring/prometheus/keylight-exporter.nix index 47a91d7e3a8..f1a7d0c38e3 100644 --- a/pkgs/servers/monitoring/prometheus/keylight-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/keylight-exporter.nix @@ -19,7 +19,7 @@ buildGoModule rec { meta = with stdenv.lib; { homepage = "https://github.com/mdlayher/keylight_exporter"; - description = "Prometheus exporter for Elgato Key Light devices."; + description = "Prometheus exporter for Elgato Key Light devices"; license = licenses.mit; maintainers = with maintainers; [ mdlayher ]; }; diff --git a/pkgs/servers/monitoring/prometheus/modemmanager-exporter.nix b/pkgs/servers/monitoring/prometheus/modemmanager-exporter.nix index 4c49c94f286..34b927e0f7b 100644 --- a/pkgs/servers/monitoring/prometheus/modemmanager-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/modemmanager-exporter.nix @@ -19,7 +19,7 @@ buildGoModule rec { meta = with stdenv.lib; { homepage = "https://github.com/mdlayher/modemmanager_exporter"; - description = "Prometheus exporter for ModemManager and its devices."; + description = "Prometheus exporter for ModemManager and its devices"; license = licenses.mit; maintainers = with maintainers; [ mdlayher ]; }; diff --git a/pkgs/servers/monitoring/prometheus/nextcloud-exporter.nix b/pkgs/servers/monitoring/prometheus/nextcloud-exporter.nix index d628cf32c57..b3eb3a5cd84 100644 --- a/pkgs/servers/monitoring/prometheus/nextcloud-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/nextcloud-exporter.nix @@ -20,7 +20,7 @@ buildGoPackage rec { passthru.tests = { inherit (nixosTests.prometheus-exporters) nextcloud; }; meta = with lib; { - description = "Prometheus exporter for Nextcloud servers."; + description = "Prometheus exporter for Nextcloud servers"; homepage = "https://github.com/xperimental/nextcloud-exporter"; license = licenses.mit; maintainers = with maintainers; [ willibutz ]; diff --git a/pkgs/servers/monitoring/prometheus/promscale.nix b/pkgs/servers/monitoring/prometheus/promscale.nix index 1bf5d511e28..37e3ec0375c 100644 --- a/pkgs/servers/monitoring/prometheus/promscale.nix +++ b/pkgs/servers/monitoring/prometheus/promscale.nix @@ -5,20 +5,20 @@ buildGoModule rec { pname = "promscale"; - version = "0.1.0"; + version = "0.1.1"; src = fetchFromGitHub { owner = "timescale"; repo = pname; rev = "${version}"; - sha256 = "sha256:0535sq640b9x9vi2sfazi9qs6arwjdn7nff16km2agncvs449dn4"; + sha256 = "sha256:00mhkp3nf6h2zsvmmwyza1lahvmm05isfi7rqkx24c0dmkmif3x9"; }; vendorSha256 = "sha256:1ilciwf08678sciwwrjalwvcs5bp7x254nxc3nhdf88cf0bp2nxi"; buildFlagsArray = [ "-ldflags=-s -w -X github.com/timescale/promscale/pkg/version.Version=${version} -X github.com/timescale/promscale/pkg/version.CommitHash=${src.rev}" ]; - doCheck = false; + doCheck = false; # Requires access to a docker daemon meta = with stdenv.lib; { description = "An open-source analytical platform for Prometheus metrics"; diff --git a/pkgs/servers/monitoring/prometheus/pushgateway.nix b/pkgs/servers/monitoring/prometheus/pushgateway.nix index 1425fccdca4..d2d59c5e5de 100644 --- a/pkgs/servers/monitoring/prometheus/pushgateway.nix +++ b/pkgs/servers/monitoring/prometheus/pushgateway.nix @@ -2,7 +2,7 @@ buildGoPackage rec { pname = "pushgateway"; - version = "1.2.0"; + version = "1.3.0"; rev = "v${version}"; goPackagePath = "github.com/prometheus/pushgateway"; @@ -11,7 +11,7 @@ buildGoPackage rec { inherit rev; owner = "prometheus"; repo = "pushgateway"; - sha256 = "0q57pvdfapi1xx8mw7ykvxs64alypyqbxwvrqjcrgv2jidbcd1mm"; + sha256 = "0ll6s8yqcx3fgn6gzmfb1bsfykl0ra6383nyw1kjbj260w200gls"; }; buildUser = "nix@nixpkgs"; diff --git a/pkgs/servers/monitoring/prometheus/rtl_433-exporter.nix b/pkgs/servers/monitoring/prometheus/rtl_433-exporter.nix new file mode 100644 index 00000000000..502ce8e0d43 --- /dev/null +++ b/pkgs/servers/monitoring/prometheus/rtl_433-exporter.nix @@ -0,0 +1,26 @@ +{ lib, buildGoModule, fetchFromGitHub, bash, nixosTests }: + +buildGoModule rec { + pname = "rtl_433-exporter"; + version = "0.1"; + + src = fetchFromGitHub { + owner = "mhansen"; + repo = "rtl_433_prometheus"; + rev = "v${version}"; + sha256 = "1998gvfa5310bxhi6kfv8bn99369dxph3pwrpp335997b25lc2w2"; + }; + + postPatch = "substituteInPlace rtl_433_prometheus.go --replace /bin/bash ${bash}/bin/bash"; + + vendorSha256 = "03mnmzq72844hzyw7iq5g4gm1ihpqkg4i9dgj2yln1ghwk843hq6"; + + passthru.tests = { inherit (nixosTests.prometheus-exporters) rtl_433; }; + + meta = with lib; { + description = "Prometheus time-series DB exporter for rtl_433 433MHz radio packet decoder"; + homepage = "https://github.com/mhansen/rtl_433_prometheus"; + license = licenses.mit; + maintainers = with maintainers; [ zopieux ]; + }; +} diff --git a/pkgs/servers/monitoring/prometheus/snmp-exporter.nix b/pkgs/servers/monitoring/prometheus/snmp-exporter.nix index d3b35a8a8f1..b6fafe5eaa4 100644 --- a/pkgs/servers/monitoring/prometheus/snmp-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/snmp-exporter.nix @@ -2,7 +2,7 @@ buildGoPackage rec { pname = "snmp_exporter"; - version = "0.18.0"; + version = "0.19.0"; goPackagePath = "github.com/prometheus/snmp_exporter"; @@ -10,7 +10,7 @@ buildGoPackage rec { owner = "prometheus"; repo = "snmp_exporter"; rev = "v${version}"; - sha256 = "1zdkb036zy2sw1drlp2m2z1yb7857d2y3yn2y3l0a1kkd4zcqkk4"; + sha256 = "1ppi5lmc2lryawpw1b3kpg3qxr7v62zbiwg2v1d8sq1y5b2xdza6"; }; buildInputs = [ net-snmp ]; diff --git a/pkgs/servers/monitoring/prometheus/wireguard-exporter.nix b/pkgs/servers/monitoring/prometheus/wireguard-exporter.nix index 8f927f32e2d..0f303f669af 100644 --- a/pkgs/servers/monitoring/prometheus/wireguard-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/wireguard-exporter.nix @@ -18,7 +18,7 @@ rustPlatform.buildRustPackage rec { passthru.tests = { inherit (nixosTests.prometheus-exporters) wireguard; }; meta = with lib; { - description = "A Prometheus exporter for WireGuard, written in Rust."; + description = "A Prometheus exporter for WireGuard, written in Rust"; homepage = "https://github.com/MindFlavor/prometheus_wireguard_exporter"; license = licenses.mit; maintainers = with maintainers; [ ma27 globin ]; diff --git a/pkgs/servers/monitoring/telegraf/default.nix b/pkgs/servers/monitoring/telegraf/default.nix index b0e9ef356a6..a12b9e50adb 100644 --- a/pkgs/servers/monitoring/telegraf/default.nix +++ b/pkgs/servers/monitoring/telegraf/default.nix @@ -33,7 +33,7 @@ buildGoModule rec { passthru.tests = { inherit (nixosTests) telegraf; }; meta = with lib; { - description = "The plugin-driven server agent for collecting & reporting metrics."; + description = "The plugin-driven server agent for collecting & reporting metrics"; license = licenses.mit; homepage = "https://www.influxdata.com/time-series-platform/telegraf/"; maintainers = with maintainers; [ mic92 roblabla foxit64 ]; diff --git a/pkgs/servers/monitoring/zabbix/versions.nix b/pkgs/servers/monitoring/zabbix/versions.nix index 79d2916c05a..a19b2432bec 100644 --- a/pkgs/servers/monitoring/zabbix/versions.nix +++ b/pkgs/servers/monitoring/zabbix/versions.nix @@ -1,12 +1,12 @@ generic: { v50 = generic { - version = "5.0.4"; - sha256 = "0ivigwqcdfzx58vx5crixjsr4fh8l4bcf1wvnpf6xg46p0zninn1"; + version = "5.0.5"; + sha256 = "104jxyaclx92pyas7kqz357da7qjcw44yx3yi7vqlc7h5ch3avgc"; }; v40 = generic { - version = "4.0.25"; - sha256 = "1w9k0pw3w0klpzw7ny8igv5a97icv2jl4xicbgyr5464if8sw9ck"; + version = "4.0.26"; + sha256 = "0mbk8afkwv208hwyl0zr2l4sib65z7n9ykisznk6pjzb9kdl73s1"; }; v30 = generic { diff --git a/pkgs/servers/mpd/default.nix b/pkgs/servers/mpd/default.nix index e52e3ee664b..d994ba99dfc 100644 --- a/pkgs/servers/mpd/default.nix +++ b/pkgs/servers/mpd/default.nix @@ -24,7 +24,6 @@ , python3Packages # for sphinx-build # For tests , gtest -, fetchpatch # used to fetch an upstream patch fixing a failing test , zip }: @@ -116,13 +115,13 @@ let in stdenv.mkDerivation rec { pname = "mpd"; - version = "0.22"; + version = "0.22.1"; src = fetchFromGitHub { owner = "MusicPlayerDaemon"; repo = "MPD"; rev = "v${version}"; - sha256 = "1lsi4fgrarabkahfhf5zbmppg7jba7m362gxyqhv54hmqprl1qff"; + sha256 = "16cdmr5w1ikz4ih1nwxnynfdf8qiz4k8bak1sazkkhyavzl3jrl4"; }; buildInputs = [ @@ -155,7 +154,8 @@ let mesonAutoFeatures = "disabled"; - outputs = [ "out" "doc" "man" ]; + outputs = [ "out" "doc" ] + ++ lib.optional (builtins.elem "documentation" features_) "man"; mesonFlags = [ "-Dtest=true" diff --git a/pkgs/servers/news/leafnode/default.nix b/pkgs/servers/news/leafnode/default.nix index 76ce8d2d573..4095b95ad96 100644 --- a/pkgs/servers/news/leafnode/default.nix +++ b/pkgs/servers/news/leafnode/default.nix @@ -30,7 +30,7 @@ stdenv.mkDerivation { meta = { homepage = "http://leafnode.sourceforge.net/"; - description = "Leafnode implements a store & forward NNTP proxy"; + description = "Implementation of a store & forward NNTP proxy"; license = stdenv.lib.licenses.mit; platforms = stdenv.lib.platforms.unix; }; diff --git a/pkgs/servers/nosql/influxdb/default.nix b/pkgs/servers/nosql/influxdb/default.nix index db07bdc96a4..d4a26f086ce 100644 --- a/pkgs/servers/nosql/influxdb/default.nix +++ b/pkgs/servers/nosql/influxdb/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "influxdb"; - version = "1.8.2"; + version = "1.8.3"; src = fetchFromGitHub { owner = "influxdata"; repo = pname; rev = "v${version}"; - sha256 = "11zkia43i3in1xv84iz6rm9cfhf4k6nxn144m7dz7a7nv3chi20g"; + sha256 = "1siv31gp7ypjphxjfv91sxzpz2rxk1nn2aj17pgk0cz7c8m59ic7"; }; - vendorSha256 = "097x3z1fhdl5s3ni2qzbqxqr60l6lqcrbikq20fs052dp287q0sp"; + vendorSha256 = "1pylw30dg6ljxm9ykmsqapg1vq71bj1ngdq4arvmmzcdhy1nhmh0"; doCheck = false; diff --git a/pkgs/servers/openbgpd/default.nix b/pkgs/servers/openbgpd/default.nix index 2e0c787d0b2..02c1c607eab 100644 --- a/pkgs/servers/openbgpd/default.nix +++ b/pkgs/servers/openbgpd/default.nix @@ -1,27 +1,27 @@ -{ stdenv, fetchFromGitHub, autoconf, automake -, libtool, m4, yacc }: +{ stdenv, fetchFromGitHub, autoconf, automake, libtool, m4, yacc }: let - openbsd_version = "OPENBSD_6_7"; # This has to be equal to ${src}/OPENBSD_BRANCH + openbsd_version = + "OPENBSD_6_8"; # This has to be equal to ${src}/OPENBSD_BRANCH openbsd = fetchFromGitHub { + name = "portable"; owner = "openbgpd-portable"; repo = "openbgpd-openbsd"; rev = openbsd_version; - sha256 = "sha256-YJTHUsn6s4xLcLQuxCLmEkIE8ozxzooj71cJ5Wl+0lI="; + sha256 = "sha256-vCVK5k4g6aW2z2fg7Kv0uvkX7f34aRc8K2myb3jjl6w="; }; in stdenv.mkDerivation rec { pname = "opengpd"; - version = "6.7p0"; + version = "6.8p0"; src = fetchFromGitHub { owner = "openbgpd-portable"; repo = "openbgpd-portable"; rev = version; - sha256 = "sha256-10DfK45BsSHeyANB0OJLKog1mEj0mydXSDAT9G6u1gM"; + sha256 = "sha256-TKs6tt/SCWes6kYAGIrSShZgOLf7xKh26xG3Zk7wCCw="; }; - nativeBuildInputs = - [ autoconf automake libtool m4 yacc ]; + nativeBuildInputs = [ autoconf automake libtool m4 yacc ]; preConfigure = '' mkdir ./openbsd @@ -36,7 +36,8 @@ in stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "OpenBGPD is a FREE implementation of the Border Gateway Protocol, Version 4. It allows ordinary machines to be used as routers exchanging routes with other systems speaking the BGP protocol."; + description = + "A free implementation of the Border Gateway Protocol, Version 4. It allows ordinary machines to be used as routers exchanging routes with other systems speaking the BGP protocol"; license = licenses.isc; homepage = "http://www.openbgpd.org/"; maintainers = with maintainers; [ kloenk ]; diff --git a/pkgs/servers/osrm-backend/default.nix b/pkgs/servers/osrm-backend/default.nix index fe3e3c06285..54c0da642b7 100644 --- a/pkgs/servers/osrm-backend/default.nix +++ b/pkgs/servers/osrm-backend/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "osrm-backend"; - version = "5.22.0"; + version = "5.23.0"; src = fetchFromGitHub { - rev = "v${version}"; owner = "Project-OSRM"; repo = "osrm-backend"; - sha256 = "1m4hf26mgfvvx9z37qww8v8w4mhzyfl554ymdnzl99pr5ild093s"; + rev = "v${version}"; + sha256 = "sha256-FWfrdnpdx4YPa9l7bPc6QNyqyNvrikdeADSZIixX5vE="; }; NIX_CFLAGS_COMPILE = [ "-Wno-error=pessimizing-move" "-Wno-error=redundant-move" ]; diff --git a/pkgs/servers/pinnwand/default.nix b/pkgs/servers/pinnwand/default.nix index a2f417d88fa..16fa6a7196a 100644 --- a/pkgs/servers/pinnwand/default.nix +++ b/pkgs/servers/pinnwand/default.nix @@ -48,7 +48,7 @@ in with python.pkgs; buildPythonApplication rec { meta = with lib; { homepage = "https://supakeen.com/project/pinnwand/"; license = licenses.mit; - description = "A Python pastebin that tries to keep it simple."; + description = "A Python pastebin that tries to keep it simple"; maintainers = with maintainers; [ hexa ]; }; } diff --git a/pkgs/servers/pinnwand/steck.nix b/pkgs/servers/pinnwand/steck.nix index 09b20efc36e..90f7d6b49f5 100644 --- a/pkgs/servers/pinnwand/steck.nix +++ b/pkgs/servers/pinnwand/steck.nix @@ -24,7 +24,7 @@ python3Packages.buildPythonApplication rec { meta = with lib; { homepage = "https://github.com/supakeen/steck"; license = licenses.mit; - description = "Client for pinnwand pastebin."; + description = "Client for pinnwand pastebin"; maintainers = with maintainers; [ hexa ]; }; } diff --git a/pkgs/servers/roon-server/default.nix b/pkgs/servers/roon-server/default.nix index 9c08f392042..06541b89500 100644 --- a/pkgs/servers/roon-server/default.nix +++ b/pkgs/servers/roon-server/default.nix @@ -59,7 +59,7 @@ ''; meta = with lib; { - description = "The music player for music lovers."; + description = "The music player for music lovers"; homepage = "https://roonlabs.com"; license = licenses.unfree; maintainers = with maintainers; [ lovesegfault steell ]; diff --git a/pkgs/servers/routinator/default.nix b/pkgs/servers/routinator/default.nix index 6e57ebd42da..e80e27d7a89 100644 --- a/pkgs/servers/routinator/default.nix +++ b/pkgs/servers/routinator/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "routinator"; - version = "0.7.1"; + version = "0.8.0"; src = fetchFromGitHub { owner = "NLnetLabs"; repo = pname; rev = "v${version}"; - sha256 = "12fgvalv12v8690pxmsdg179r170d4mc1kynsb25fm0zggy838jn"; + sha256 = "1lldrb469vc7l6bkwgxz38n7lyxh74cb88xak5r0sjm1ip5q0glp"; }; - cargoSha256 = "01118mnb5gm0xqi2c8jj3fk8y55jnnyg9zgn2g4xn7f3i8dcczka"; + cargoSha256 = "sha256:19yzx9h02cx5dldliaq814n84f8w0s3nbyjk3pgia2siim5mdv94"; meta = with stdenv.lib; { description = "An RPKI Validator written in Rust"; diff --git a/pkgs/servers/samba/4.x.nix b/pkgs/servers/samba/4.x.nix index bfc8566f363..ec28834659a 100644 --- a/pkgs/servers/samba/4.x.nix +++ b/pkgs/servers/samba/4.x.nix @@ -24,6 +24,7 @@ , libtasn1 , tdb , cmocka +, rpcsvc-proto , nixosTests , enableLDAP ? false, openldap @@ -68,6 +69,7 @@ stdenv.mkDerivation rec { docbook_xsl docbook_xml_dtd_45 cmocka + rpcsvc-proto ] ++ optionals stdenv.isDarwin [ rpcgen fixDarwinDylibNames diff --git a/pkgs/servers/sql/dolt/default.nix b/pkgs/servers/sql/dolt/default.nix index 9e4eadf72da..0ee6bd26c24 100644 --- a/pkgs/servers/sql/dolt/default.nix +++ b/pkgs/servers/sql/dolt/default.nix @@ -2,23 +2,23 @@ buildGoModule rec { pname = "dolt"; - version = "0.19.0"; + version = "0.21.0"; src = fetchFromGitHub { owner = "liquidata-inc"; repo = "dolt"; rev = "v${version}"; - sha256 = "1rfwhh62phz75kariqgpkxi4wzll1crzc34x0ybihxllpjf998zx"; + sha256 = "0w9k48jxklhaql8qbbm9ay0md5nia6x3wr0zz3w44pw3gl5kvxyw"; }; modRoot = "./go"; subPackages = [ "cmd/dolt" "cmd/git-dolt" "cmd/git-dolt-smudge" ]; - vendorSha256 = "1bq8z31yxff0nybzjs7jz7rg61hgqz6l2scbab7062j8whg8wybb"; + vendorSha256 = "16xh4s7zmar0r3kwps5bbl168imyx252lvz9s3snvxzz5kd8wlnm"; doCheck = false; meta = with lib; { - description = "Relational database with version control and CLI a-la Git."; + description = "Relational database with version control and CLI a-la Git"; homepage = "https://github.com/liquidata-inc/dolt"; license = licenses.asl20; maintainers = with maintainers; [ danbst ]; diff --git a/pkgs/servers/sql/mariadb/connector-c/default.nix b/pkgs/servers/sql/mariadb/connector-c/default.nix index fb41890d432..8c71514dfba 100644 --- a/pkgs/servers/sql/mariadb/connector-c/default.nix +++ b/pkgs/servers/sql/mariadb/connector-c/default.nix @@ -18,6 +18,8 @@ stdenv.mkDerivation { inherit sha256; }; + outputs = [ "out" "dev" ]; + cmakeFlags = [ "-DMARIADB_UNIX_ADDR=/run/mysqld/mysqld.sock" "-DWITH_CURL=ON" @@ -25,6 +27,12 @@ stdenv.mkDerivation { "-DWITH_MYSQLCOMPAT=ON" ]; + postPatch = '' + substituteInPlace mariadb_config/mariadb_config.c.in \ + --replace '@CMAKE_SYSROOT@@CMAKE_INSTALL_PREFIX@/@INSTALL_INCLUDEDIR@' "$dev/include" \ + --replace '@CMAKE_SYSROOT@@CMAKE_INSTALL_PREFIX@/@INSTALL_LIBDIR@' "$out/lib/mariadb" + ''; + # The cmake setup-hook uses $out/lib by default, this is not the case here. preConfigure = optionalString stdenv.isDarwin '' cmakeFlagsArray+=("-DCMAKE_INSTALL_NAME_DIR=$out/lib/mariadb") @@ -36,12 +44,16 @@ stdenv.mkDerivation { enableParallelBuilding = true; + postInstall = '' + moveToOutput bin/mariadb_config "$dev" + ''; + postFixup = '' - ln -sv mariadb_config $out/bin/mysql_config + ln -sv mariadb_config $dev/bin/mysql_config ln -sv mariadb $out/lib/mysql - ln -sv mariadb $out/include/mysql - ln -sv mariadb_version.h $out/include/mariadb/mysql_version.h - ln -sv libmariadb.pc $out/lib/pkgconfig/mysqlclient.pc + ln -sv mariadb $dev/include/mysql + ln -sv mariadb_version.h $dev/include/mariadb/mysql_version.h + ln -sv libmariadb.pc $dev/lib/pkgconfig/mysqlclient.pc ''; meta = { diff --git a/pkgs/servers/sql/mariadb/default.nix b/pkgs/servers/sql/mariadb/default.nix index 3ba4e367312..d6ee70856fd 100644 --- a/pkgs/servers/sql/mariadb/default.nix +++ b/pkgs/servers/sql/mariadb/default.nix @@ -15,7 +15,7 @@ let # in mariadb # spans the whole file libExt = stdenv.hostPlatform.extensions.sharedLibrary; -mytopEnv = perl.withPackages (p: with p; [ DataDumper DBDmysql DBI TermReadKey ]); +mytopEnv = perl.withPackages (p: with p; [ DBDmysql DBI TermReadKey ]); mariadb = server // { inherit client; # MariaDB Client @@ -23,14 +23,14 @@ mariadb = server // { }; common = rec { # attributes common to both builds - version = "10.4.14"; + version = "10.4.15"; src = fetchurl { urls = [ "https://downloads.mariadb.org/f/mariadb-${version}/source/mariadb-${version}.tar.gz" "https://downloads.mariadb.com/MariaDB/mariadb-${version}/source/mariadb-${version}.tar.gz" ]; - sha256 = "1z469j39chq7d3dp39cljjbzcz0wl1g7rii85x46290jw1cwsbzr"; + sha256 = "0cdfzr768cb7n9ag9gqahr8c6igfn513md67xn4rf98ajmnxg0r7"; name = "mariadb-${version}.tar.gz"; }; diff --git a/pkgs/servers/sql/monetdb/default.nix b/pkgs/servers/sql/monetdb/default.nix index 9aec724ba62..699fcf8569f 100644 --- a/pkgs/servers/sql/monetdb/default.nix +++ b/pkgs/servers/sql/monetdb/default.nix @@ -1,24 +1,23 @@ -{ stdenv, fetchurl, pkgconfig, file +{ stdenv, fetchurl, cmake, python3 , bison, openssl, readline, bzip2 }: -let - version = "11.37.11"; -in stdenv.mkDerivation { - +stdenv.mkDerivation rec { pname = "monetdb"; - inherit version; + version = "11.39.5"; src = fetchurl { url = "https://dev.monetdb.org/downloads/sources/archive/MonetDB-${version}.tar.bz2"; - sha256 = "0ch4vka64m5fbyah2730rcv7xpgy4hq26vbi8wd8mkadwna7azr5"; + sha256 = "1hdlab2gcj71yw6sb3yvl8s027blcsyvch3n5sgi0a2yz84wj765"; }; postPatch = '' - sed -i "s,/usr/bin/file,${file}/bin/file," configure + substituteInPlace cmake/monetdb-packages.cmake --replace \ + 'get_os_release_info(LINUX_DISTRO LINUX_DISTRO_VERSION)' \ + 'set(LINUX_DISTRO "nixos")' ''; - nativeBuildInputs = [ pkgconfig file ]; + nativeBuildInputs = [ cmake python3 ]; buildInputs = [ bison openssl readline bzip2 ]; meta = with stdenv.lib; { diff --git a/pkgs/servers/sql/mysql/5.7.x.nix b/pkgs/servers/sql/mysql/5.7.x.nix index 6636c099e83..8b489816a50 100644 --- a/pkgs/servers/sql/mysql/5.7.x.nix +++ b/pkgs/servers/sql/mysql/5.7.x.nix @@ -1,6 +1,8 @@ { stdenv, fetchurl, cmake, bison, pkgconfig , boost, libedit, libevent, lz4, ncurses, openssl, protobuf, readline, zlib, perl -, cctools, CoreServices, developer_cmds }: +, cctools, CoreServices, developer_cmds +, libtirpc, rpcsvc-proto +}: # Note: zlib is not required; MySQL can use an internal zlib. @@ -19,9 +21,9 @@ self = stdenv.mkDerivation rec { export PATH=$PATH:$TMPDIR ''; - nativeBuildInputs = [ cmake bison pkgconfig ]; + nativeBuildInputs = [ cmake bison pkgconfig rpcsvc-proto ]; - buildInputs = [ boost libedit libevent lz4 ncurses openssl protobuf readline zlib ] + buildInputs = [ boost libedit libevent lz4 ncurses openssl protobuf readline zlib libtirpc ] ++ stdenv.lib.optionals stdenv.isDarwin [ perl cctools CoreServices developer_cmds ]; outputs = [ "out" "static" ]; diff --git a/pkgs/servers/sql/mysql/8.0.x.nix b/pkgs/servers/sql/mysql/8.0.x.nix index 3c1d1f6645c..299302b27de 100644 --- a/pkgs/servers/sql/mysql/8.0.x.nix +++ b/pkgs/servers/sql/mysql/8.0.x.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchurl, bison, cmake, pkgconfig , boost, icu, libedit, libevent, lz4, ncurses, openssl, protobuf, re2, readline, zlib -, numactl, perl, cctools, CoreServices, developer_cmds +, numactl, perl, cctools, CoreServices, developer_cmds, libtirpc, rpcsvc-proto }: let @@ -18,12 +18,12 @@ self = stdenv.mkDerivation rec { ./libutils.patch ]; - nativeBuildInputs = [ bison cmake pkgconfig ]; + nativeBuildInputs = [ bison cmake pkgconfig rpcsvc-proto ]; buildInputs = [ boost icu libedit libevent lz4 ncurses openssl protobuf re2 readline zlib ] ++ lib.optionals stdenv.isLinux [ - numactl + numactl libtirpc ] ++ lib.optionals stdenv.isDarwin [ cctools CoreServices developer_cmds ]; diff --git a/pkgs/servers/sql/postgresql/ext/periods.nix b/pkgs/servers/sql/postgresql/ext/periods.nix index cf859a4bde0..c2277019f89 100644 --- a/pkgs/servers/sql/postgresql/ext/periods.nix +++ b/pkgs/servers/sql/postgresql/ext/periods.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "periods"; - version = "1.1"; + version = "1.2"; src = fetchFromGitHub { owner = "xocolatl"; repo = pname; rev = "v${version}"; - sha256 = "0gdnlbh7kp7c0kvsrri2kxdbmm2qgib1qqpl37203z6c3fk45kfh"; + sha256 = "13aix61qzlb7cs042dz4x0z4sc2xayg4nzi2cks46zibxm5i4gzm"; }; buildInputs = [ postgresql ]; diff --git a/pkgs/servers/sql/postgresql/ext/pg_similarity.nix b/pkgs/servers/sql/postgresql/ext/pg_similarity.nix index 301160ce132..70cbb656e0a 100644 --- a/pkgs/servers/sql/postgresql/ext/pg_similarity.nix +++ b/pkgs/servers/sql/postgresql/ext/pg_similarity.nix @@ -18,7 +18,8 @@ stdenv.mkDerivation { ''; meta = { - description = '' + description = "An extension to support similarity queries on PostgreSQL"; + longDescription = '' pg_similarity is an extension to support similarity queries on PostgreSQL. The implementation is tightly integrated in the RDBMS in the sense that it defines operators so instead of the traditional operators (= and <>) you can use ~~~ and ~!~ (any of these operators represents a similarity function). diff --git a/pkgs/servers/sql/postgresql/ext/pgtap.nix b/pkgs/servers/sql/postgresql/ext/pgtap.nix index d86c7098401..69f46ba3e90 100644 --- a/pkgs/servers/sql/postgresql/ext/pgtap.nix +++ b/pkgs/servers/sql/postgresql/ext/pgtap.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "pgTAP is a unit testing framework for PostgreSQL"; + description = "A unit testing framework for PostgreSQL"; longDescription = '' pgTAP is a unit testing framework for PostgreSQL written in PL/pgSQL and PL/SQL. It includes a comprehensive collection of TAP-emitting assertion functions, diff --git a/pkgs/servers/tacacsplus/default.nix b/pkgs/servers/tacacsplus/default.nix index 5010838cbe0..296b79f0a44 100644 --- a/pkgs/servers/tacacsplus/default.nix +++ b/pkgs/servers/tacacsplus/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, tcp_wrappers, flex, bison, perl }: +{ stdenv, fetchurl, tcp_wrappers, flex, bison, perl, libnsl }: stdenv.mkDerivation rec { pname = "tacacsplus"; @@ -10,7 +10,7 @@ stdenv.mkDerivation rec { }; nativeBuildInputs = [ flex bison ]; - buildInputs = [ tcp_wrappers perl ]; + buildInputs = [ tcp_wrappers perl libnsl ]; meta = with stdenv.lib; { description = "A protocol for authentication, authorization and accounting (AAA) services for routers and network devices"; diff --git a/pkgs/servers/tailscale/default.nix b/pkgs/servers/tailscale/default.nix index 32c0c84dd08..2e14b0fe7f8 100644 --- a/pkgs/servers/tailscale/default.nix +++ b/pkgs/servers/tailscale/default.nix @@ -21,6 +21,13 @@ buildGoModule rec { subPackages = [ "cmd/tailscale" "cmd/tailscaled" ]; + preBuild = '' + export buildFlagsArray=( + -tags="xversion" + -ldflags="-X tailscale.com/version.LONG=${version} -X tailscale.com/version.SHORT=${version}" + ) + ''; + postInstall = '' wrapProgram $out/bin/tailscaled --prefix PATH : ${ lib.makeBinPath [ iproute iptables ] diff --git a/pkgs/servers/tang/default.nix b/pkgs/servers/tang/default.nix index 5aa261bd8a4..caeb969f23b 100644 --- a/pkgs/servers/tang/default.nix +++ b/pkgs/servers/tang/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation rec { outputs = [ "out" "man" ]; meta = { - description = "Server for binding data to network presence."; + description = "Server for binding data to network presence"; homepage = "https://github.com/latchset/tang"; maintainers = with lib.maintainers; [ fpletz ]; license = lib.licenses.gpl3Plus; diff --git a/pkgs/servers/tarssh/default.nix b/pkgs/servers/tarssh/default.nix new file mode 100644 index 00000000000..72e636b303f --- /dev/null +++ b/pkgs/servers/tarssh/default.nix @@ -0,0 +1,25 @@ +{ fetchFromGitHub, rustPlatform, stdenv }: + +with rustPlatform; + +buildRustPackage rec { + pname = "tarssh"; + version = "0.4.0"; + + src = fetchFromGitHub { + rev = "v${version}"; + owner = "Freaky"; + repo = pname; + sha256 = "0fm0rwknhm39nhd6g0pnxby34i5gpmi5ri795d9ylsw0pqwz6kd0"; + }; + + cargoSha256 = "108xdpgfgfd4z455snif0mzbla0rv8gjqxci5qgwjzfyshwkprgv"; + + meta = with stdenv.lib; { + description = "A simple SSH tarpit inspired by endlessh"; + homepage = "https://github.com/Freaky/tarssh"; + license = [ licenses.mit ]; + maintainers = with maintainers; [ sohalt ]; + platforms = platforms.unix ; + }; +} diff --git a/pkgs/servers/tautulli/default.nix b/pkgs/servers/tautulli/default.nix index ff2f993ecc1..1fbf94beb18 100644 --- a/pkgs/servers/tautulli/default.nix +++ b/pkgs/servers/tautulli/default.nix @@ -45,7 +45,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "A Python based monitoring and tracking tool for Plex Media Server."; + description = "A Python based monitoring and tracking tool for Plex Media Server"; homepage = "https://tautulli.com/"; license = licenses.gpl3; platforms = platforms.linux; diff --git a/pkgs/servers/unifi/default.nix b/pkgs/servers/unifi/default.nix index a43f00973ed..bce539ec0f6 100644 --- a/pkgs/servers/unifi/default.nix +++ b/pkgs/servers/unifi/default.nix @@ -34,7 +34,7 @@ let description = "Controller for Ubiquiti UniFi access points"; license = licenses.unfree; platforms = platforms.unix; - maintainers = with maintainers; [ erictapen globin ]; + maintainers = with maintainers; [ erictapen globin patryk27 ]; }; }; @@ -52,4 +52,9 @@ in { version = "5.14.23"; sha256 = "1aar05yjm3z5a30x505w4kakbyz35i7mk7xyg0wm4ml6h94d84pv"; }; + + unifiBeta = generic { + version = "6.0.23"; + sha256 = "sha256-t/s0UEk0CgnAeydtLWTgpZjnAJqnyfyESNNVe1d5PHo="; + }; } diff --git a/pkgs/servers/web-apps/engelsystem/default.nix b/pkgs/servers/web-apps/engelsystem/default.nix index 8ef6a9afa0e..ad3a6995800 100644 --- a/pkgs/servers/web-apps/engelsystem/default.nix +++ b/pkgs/servers/web-apps/engelsystem/default.nix @@ -43,7 +43,7 @@ in stdenv.mkDerivation rec { meta = with stdenv.lib; { description = - "Coordinate your helpers in teams, assign them to work shifts or let them decide for themselves when and where they want to help with what"; + "Coordinate your volunteers in teams, assign them to work shifts or let them decide for themselves when and where they want to help with what"; license = licenses.gpl2; homepage = "https://engelsystem.de"; maintainers = with maintainers; [ kloenk ]; diff --git a/pkgs/servers/web-apps/jirafeau/default.nix b/pkgs/servers/web-apps/jirafeau/default.nix index 3dc9fb17190..1f3dd2e9012 100644 --- a/pkgs/servers/web-apps/jirafeau/default.nix +++ b/pkgs/servers/web-apps/jirafeau/default.nix @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "Jirafeau is a web site permitting to upload a file in a simple way and give an unique link to it."; + description = "Website permitting upload of a file in a simple way and giving a unique link to it"; license = licenses.agpl3; homepage = "https://gitlab.com/mojo42/Jirafeau"; platforms = platforms.all; diff --git a/pkgs/servers/web-apps/pgpkeyserver-lite/default.nix b/pkgs/servers/web-apps/pgpkeyserver-lite/default.nix index 8fea1f99256..f9838857061 100644 --- a/pkgs/servers/web-apps/pgpkeyserver-lite/default.nix +++ b/pkgs/servers/web-apps/pgpkeyserver-lite/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation { meta = with stdenv.lib; { homepage = "https://github.com/mattrude/pgpkeyserver-lite"; - description = "A lightweight static front-end for a sks keyserver."; + description = "A lightweight static front-end for a sks keyserver"; license = licenses.gpl3; maintainers = with maintainers; [ calbrecht globin ]; }; diff --git a/pkgs/servers/web-apps/sogo/default.nix b/pkgs/servers/web-apps/sogo/default.nix index 2e97ab31725..aa2a9fc9258 100644 --- a/pkgs/servers/web-apps/sogo/default.nix +++ b/pkgs/servers/web-apps/sogo/default.nix @@ -67,7 +67,7 @@ with lib; gnustep.stdenv.mkDerivation rec { ''; meta = { - description = "SOGo is a very fast and scalable modern collaboration suite (groupware)"; + description = "A very fast and scalable modern collaboration suite (groupware)"; license = with licenses; [ gpl2 lgpl21 ]; homepage = "https://sogo.nu/"; platforms = platforms.linux; diff --git a/pkgs/servers/x11/xorg/default.nix b/pkgs/servers/x11/xorg/default.nix index 81ce111ecac..efc2cb2acbd 100644 --- a/pkgs/servers/x11/xorg/default.nix +++ b/pkgs/servers/x11/xorg/default.nix @@ -2692,11 +2692,11 @@ lib.makeScope newScope (self: with self; { }) {}; xorgserver = callPackage ({ stdenv, pkgconfig, fetchurl, xorgproto, openssl, libX11, libXau, libXaw, libxcb, xcbutil, xcbutilwm, xcbutilimage, xcbutilkeysyms, xcbutilrenderutil, libXdmcp, libXfixes, libxkbfile, libXmu, libXpm, libXrender, libXres, libXt }: stdenv.mkDerivation { - name = "xorg-server-1.20.8"; + name = "xorg-server-1.20.9"; builder = ./builder.sh; src = fetchurl { - url = "mirror://xorg/individual/xserver/xorg-server-1.20.8.tar.bz2"; - sha256 = "0ih15m7gh1z1ly6z7g82bkni719yisqmbk61a1wgp82bxrmn8yyi"; + url = "mirror://xorg/individual/xserver/xorg-server-1.20.9.tar.bz2"; + sha256 = "0w9mrnffvjgmwi50kln15i8rpdskxv97r78l75wlcmg4vzhg46g2"; }; hardeningDisable = [ "bindnow" "relro" ]; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/servers/x11/xorg/overrides.nix b/pkgs/servers/x11/xorg/overrides.nix index 80112755e6d..80ea5553ad6 100644 --- a/pkgs/servers/x11/xorg/overrides.nix +++ b/pkgs/servers/x11/xorg/overrides.nix @@ -4,7 +4,7 @@ freetype, tradcpp, fontconfig, meson, ninja, ed, fontforge, libGL, spice-protocol, zlib, libGLU, dbus, libunwind, libdrm, mesa, udev, bootstrap_cmds, bison, flex, clangStdenv, autoreconfHook, - mcpp, epoxy, openssl, pkgconfig, llvm_6, python3, + mcpp, epoxy, openssl, pkgconfig, llvm_6, python3, libxslt, ApplicationServices, Carbon, Cocoa, Xplugin }: @@ -469,7 +469,7 @@ self: super: }); xkeyboardconfig = super.xkeyboardconfig.overrideAttrs (attrs: { - nativeBuildInputs = attrs.nativeBuildInputs ++ [intltool]; + nativeBuildInputs = attrs.nativeBuildInputs ++ [ intltool libxslt ]; configureFlags = [ "--with-xkb-rules-symlink=xorg" ]; @@ -642,6 +642,16 @@ self: super: propagatedBuildInputs = attrs.propagatedBuildInputs or [] ++ [ libpciaccess epoxy ] ++ commonPropagatedBuildInputs ++ lib.optionals stdenv.isLinux [ udev ]; + # patchPhase is not working, this is a hack but we can remove it in the next xorg-server release + preConfigure = let + # https://gitlab.freedesktop.org/xorg/xserver/-/issues/1067 + headerFix = fetchpatch { + url = "https://gitlab.freedesktop.org/xorg/xserver/-/commit/919f1f46fc67dae93b2b3f278fcbfc77af34ec58.patch"; + sha256 = "0w48rdpl01v0c97n9zdxhf929y76r1f6rqkfs9mfygkz3xcmrfsq"; + }; + in '' + patch -p1 < ${headerFix} + ''; prePatch = stdenv.lib.optionalString stdenv.hostPlatform.isMusl '' export CFLAGS+=" -D__uid_t=uid_t -D__gid_t=gid_t" ''; diff --git a/pkgs/servers/x11/xorg/tarballs.list b/pkgs/servers/x11/xorg/tarballs.list index ae75b138401..ecc477980b8 100644 --- a/pkgs/servers/x11/xorg/tarballs.list +++ b/pkgs/servers/x11/xorg/tarballs.list @@ -218,4 +218,4 @@ mirror://xorg/individual/util/lndir-1.0.3.tar.bz2 mirror://xorg/individual/util/makedepend-1.0.6.tar.bz2 mirror://xorg/individual/util/util-macros-1.19.2.tar.bz2 mirror://xorg/individual/util/xorg-cf-files-1.0.6.tar.bz2 -mirror://xorg/individual/xserver/xorg-server-1.20.8.tar.bz2 +mirror://xorg/individual/xserver/xorg-server-1.20.9.tar.bz2 diff --git a/pkgs/servers/xinetd/default.nix b/pkgs/servers/xinetd/default.nix index ebe927a85d8..0ecd65ce6fa 100644 --- a/pkgs/servers/xinetd/default.nix +++ b/pkgs/servers/xinetd/default.nix @@ -1,4 +1,4 @@ -{ fetchurl, fetchpatch, stdenv }: +{ fetchurl, fetchpatch, stdenv, libtirpc }: stdenv.mkDerivation rec { name = "xinetd-2.3.15"; @@ -16,6 +16,11 @@ stdenv.mkDerivation rec { }) ]; + buildInputs = [ libtirpc ]; + + NIX_CFLAGS_COMPILE = [ "-I${libtirpc.dev}/include/tirpc" ]; + NIX_LDFLAGS = [ "-ltirpc" ]; + meta = { description = "Secure replacement for inetd"; platforms = stdenv.lib.platforms.linux; diff --git a/pkgs/servers/zigbee2mqtt/default.nix b/pkgs/servers/zigbee2mqtt/default.nix index 235f0209674..e28d9a73aea 100644 --- a/pkgs/servers/zigbee2mqtt/default.nix +++ b/pkgs/servers/zigbee2mqtt/default.nix @@ -3,7 +3,7 @@ let package = (import ./node.nix { inherit pkgs system; }).package; in package.override rec { - version = "1.14.4"; + version = "1.15.0"; reconstructLock = true; postInstall = '' @@ -20,7 +20,7 @@ package.override rec { owner = "Koenkk"; repo = "zigbee2mqtt"; rev = version; - sha256 = "1gyl4f7wh7796w4789pi0ix5y30677784miwylr8wrfqgb1hmddq"; + sha256 = "1kbrkmam0x2mhqps58xwagp8y3q6zyz0qlx57ys2z2wcs12lpw4r"; }; passthru.tests.zigbee2mqtt = nixosTests.zigbee2mqtt; diff --git a/pkgs/servers/zigbee2mqtt/node-packages.nix b/pkgs/servers/zigbee2mqtt/node-packages.nix index 1605e25da65..dfe00bd467b 100644 --- a/pkgs/servers/zigbee2mqtt/node-packages.nix +++ b/pkgs/servers/zigbee2mqtt/node-packages.nix @@ -4,13 +4,13 @@ let sources = { - "@babel/cli-7.10.5" = { + "@babel/cli-7.11.6" = { name = "_at_babel_slash_cli"; packageName = "@babel/cli"; - version = "7.10.5"; + version = "7.11.6"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/cli/-/cli-7.10.5.tgz"; - sha512 = "j9H9qSf3kLdM0Ao3aGPbGZ73mEA9XazuupcS6cDGWuiyAcANoguhP0r2Lx32H5JGw4sSSoHG3x/mxVnHgvOoyA=="; + url = "https://registry.npmjs.org/@babel/cli/-/cli-7.11.6.tgz"; + sha512 = "+w7BZCvkewSmaRM6H4L2QM3RL90teqEIHDIFXAmrW33+0jhlymnDAEdqVeCZATvxhQuio1ifoGVlJJbIiH9Ffg=="; }; }; "@babel/code-frame-7.10.4" = { @@ -31,22 +31,22 @@ let sha512 = "TPSvJfv73ng0pfnEOh17bYMPQbI95+nGWc71Ss4vZdRBHTDqmM9Z8ZV4rYz8Ks7sfzc95n30k6ODIq5UGnXcYQ=="; }; }; - "@babel/core-7.11.4" = { + "@babel/core-7.11.6" = { name = "_at_babel_slash_core"; packageName = "@babel/core"; - version = "7.11.4"; + version = "7.11.6"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/core/-/core-7.11.4.tgz"; - sha512 = "5deljj5HlqRXN+5oJTY7Zs37iH3z3b++KjiKtIsJy1NrjOOVSEaJHEetLBhyu0aQOSNNZ/0IuEAan9GzRuDXHg=="; + url = "https://registry.npmjs.org/@babel/core/-/core-7.11.6.tgz"; + sha512 = "Wpcv03AGnmkgm6uS6k8iwhIwTrcP0m17TL1n1sy7qD0qelDu4XNeW0dN0mHfa+Gei211yDaLoEe/VlbXQzM4Bg=="; }; }; - "@babel/generator-7.11.4" = { + "@babel/generator-7.11.6" = { name = "_at_babel_slash_generator"; packageName = "@babel/generator"; - version = "7.11.4"; + version = "7.11.6"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/generator/-/generator-7.11.4.tgz"; - sha512 = "Rn26vueFx0eOoz7iifCN2UHT6rGtnkSGWSoDRIy8jZN3B91PzeSULbswfLoOWuTuAcNwpG/mxy+uCTDnZ9Mp1g=="; + url = "https://registry.npmjs.org/@babel/generator/-/generator-7.11.6.tgz"; + sha512 = "DWtQ1PV3r+cLbySoHrwn9RWEgKMBLLma4OBQloPRyDYvc5msJM9kvTLo1YnlJd1P/ZuKbdli3ijr5q3FvAF3uA=="; }; }; "@babel/helper-annotate-as-pure-7.10.4" = { @@ -274,13 +274,13 @@ let sha512 = "i6rgnR/YgPEQzZZnbTHHuZdlE8qyoBNalD6F+q4vAFlcMEcqmkoG+mPqJYJCo63qPf74+Y1UZsl3l6f7/RIkmA=="; }; }; - "@babel/parser-7.11.4" = { + "@babel/parser-7.11.5" = { name = "_at_babel_slash_parser"; packageName = "@babel/parser"; - version = "7.11.4"; + version = "7.11.5"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/parser/-/parser-7.11.4.tgz"; - sha512 = "MggwidiH+E9j5Sh8pbrX5sJvMcsqS5o+7iB42M9/k0CD63MjYbdP4nhSh7uB5wnv2/RVzTZFTxzF/kIa5mrCqA=="; + url = "https://registry.npmjs.org/@babel/parser/-/parser-7.11.5.tgz"; + sha512 = "X9rD8qqm695vgmeaQ4fvz/o3+Wk4ZzQvSHkDBgpYKxpD4qTAUm88ZKtHkVqIOsYFFbIQ6wQYhC6q7pjqVK0E0Q=="; }; }; "@babel/plugin-proposal-async-generator-functions-7.10.5" = { @@ -832,13 +832,13 @@ let sha512 = "wNfsc4s8N2qnIwpO/WP2ZiSyjfpTamT2C9V9FDH/Ljub9zw6P3SjkXcFmc0RQUt96k2fmIvtla2MMjgTwIAC+A=="; }; }; - "@babel/preset-env-7.11.0" = { + "@babel/preset-env-7.11.5" = { name = "_at_babel_slash_preset-env"; packageName = "@babel/preset-env"; - version = "7.11.0"; + version = "7.11.5"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/preset-env/-/preset-env-7.11.0.tgz"; - sha512 = "2u1/k7rG/gTh02dylX2kL3S0IJNF+J6bfDSp4DI2Ma8QN6Y9x9pmAax59fsCk6QUQG0yqH47yJWA+u1I1LccAg=="; + url = "https://registry.npmjs.org/@babel/preset-env/-/preset-env-7.11.5.tgz"; + sha512 = "kXqmW1jVcnB2cdueV+fyBM8estd5mlNfaQi6lwLgRwCby4edpavgbFhiBNjmWA3JpB/yZGSISa7Srf+TwxDQoA=="; }; }; "@babel/preset-modules-0.1.4" = { @@ -877,22 +877,22 @@ let sha512 = "ZCjD27cGJFUB6nmCB1Enki3r+L5kJveX9pq1SvAUKoICy6CZ9yD8xO086YXdYhvNjBdnekm4ZnaP5yC8Cs/1tA=="; }; }; - "@babel/traverse-7.11.0" = { + "@babel/traverse-7.11.5" = { name = "_at_babel_slash_traverse"; packageName = "@babel/traverse"; - version = "7.11.0"; + version = "7.11.5"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/traverse/-/traverse-7.11.0.tgz"; - sha512 = "ZB2V+LskoWKNpMq6E5UUCrjtDUh5IOTAyIl0dTjIEoXum/iKWkoIEKIRDnUucO6f+2FzNkE0oD4RLKoPIufDtg=="; + url = "https://registry.npmjs.org/@babel/traverse/-/traverse-7.11.5.tgz"; + sha512 = "EjiPXt+r7LiCZXEfRpSJd+jUMnBd4/9OUv7Nx3+0u9+eimMwJmG0Q98lw4/289JCoxSE8OolDMNZaaF/JZ69WQ=="; }; }; - "@babel/types-7.11.0" = { + "@babel/types-7.11.5" = { name = "_at_babel_slash_types"; packageName = "@babel/types"; - version = "7.11.0"; + version = "7.11.5"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/types/-/types-7.11.0.tgz"; - sha512 = "O53yME4ZZI0jO1EVGtF1ePGl0LHirG4P1ibcD80XyzZcKhcMFeCXmh4Xb1ifGBIV233Qg12x4rBfQgA+tmOukA=="; + url = "https://registry.npmjs.org/@babel/types/-/types-7.11.5.tgz"; + sha512 = "bvM7Qz6eKnJVFIn+1LPtjlBFPVN5jNDc1XmN15vWe7Q3DPBufWWsLiIvUu7xW87uTG6QoggpIDnUgLQvPheU+Q=="; }; }; "@bcoe/v8-coverage-0.2.3" = { @@ -922,6 +922,15 @@ let sha512 = "+A1YivoVDNNVCdfozHSR8v/jyuuLTMXwjWuxPFlFlUapXoGc+Gj9mDlTDDfrwl7rXCl2tNZ0kE8sIBO6YOn96Q=="; }; }; + "@eslint/eslintrc-0.1.3" = { + name = "_at_eslint_slash_eslintrc"; + packageName = "@eslint/eslintrc"; + version = "0.1.3"; + src = fetchurl { + url = "https://registry.npmjs.org/@eslint/eslintrc/-/eslintrc-0.1.3.tgz"; + sha512 = "4YVwPkANLeNtRjMekzux1ci8hIaH5eGKktGqR0d3LWsKNn5B2X/1Z6Trxy7jQXl9EBGE6Yj02O+t09FMeRllaA=="; + }; + }; "@istanbuljs/load-nyc-config-1.1.0" = { name = "_at_istanbuljs_slash_load-nyc-config"; packageName = "@istanbuljs/load-nyc-config"; @@ -1048,6 +1057,33 @@ let sha512 = "BDPG23U0qDeAvU4f99haztXwdAg3hz4El95LkAM+tHAqqhiVzRpEGHHU8EDxT/AnxOrA65YjLBwDahdJ9pTLJQ=="; }; }; + "@nodelib/fs.scandir-2.1.3" = { + name = "_at_nodelib_slash_fs.scandir"; + packageName = "@nodelib/fs.scandir"; + version = "2.1.3"; + src = fetchurl { + url = "https://registry.npmjs.org/@nodelib/fs.scandir/-/fs.scandir-2.1.3.tgz"; + sha512 = "eGmwYQn3gxo4r7jdQnkrrN6bY478C3P+a/y72IJukF8LjB6ZHeB3c+Ehacj3sYeSmUXGlnA67/PmbM9CVwL7Dw=="; + }; + }; + "@nodelib/fs.stat-2.0.3" = { + name = "_at_nodelib_slash_fs.stat"; + packageName = "@nodelib/fs.stat"; + version = "2.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/@nodelib/fs.stat/-/fs.stat-2.0.3.tgz"; + sha512 = "bQBFruR2TAwoevBEd/NWMoAAtNGzTRgdrqnYCc7dhzfoNvqPzLyqlEQnzZ3kVnNrSp25iyxE00/3h2fqGAGArA=="; + }; + }; + "@nodelib/fs.walk-1.2.4" = { + name = "_at_nodelib_slash_fs.walk"; + packageName = "@nodelib/fs.walk"; + version = "1.2.4"; + src = fetchurl { + url = "https://registry.npmjs.org/@nodelib/fs.walk/-/fs.walk-1.2.4.tgz"; + sha512 = "1V9XOY4rDW0rehzbrcqAmHnz8e7SKvX27gh8Gt2WgB0+pdzdiLV83p72kZPU+jvMbS1qU5mauP2iOvO8rhmurQ=="; + }; + }; "@serialport/binding-abstract-9.0.1" = { name = "_at_serialport_slash_binding-abstract"; packageName = "@serialport/binding-abstract"; @@ -1156,40 +1192,40 @@ let sha512 = "MZPUxrmFubI36XS1DI3qmI0YdN1gks62JtFZvxR67ljjSNCeK6U08Zx4msEWOXuofgqUt6zPHSi1H9fbjR/NRA=="; }; }; - "@types/babel__core-7.1.9" = { + "@types/babel__core-7.1.10" = { name = "_at_types_slash_babel__core"; packageName = "@types/babel__core"; - version = "7.1.9"; + version = "7.1.10"; src = fetchurl { - url = "https://registry.npmjs.org/@types/babel__core/-/babel__core-7.1.9.tgz"; - sha512 = "sY2RsIJ5rpER1u3/aQ8OFSI7qGIy8o1NEEbgb2UaJcvOtXOMpd39ko723NBpjQFg9SIX7TXtjejZVGeIMLhoOw=="; + url = "https://registry.npmjs.org/@types/babel__core/-/babel__core-7.1.10.tgz"; + sha512 = "x8OM8XzITIMyiwl5Vmo2B1cR1S1Ipkyv4mdlbJjMa1lmuKvKY9FrBbEANIaMlnWn5Rf7uO+rC/VgYabNkE17Hw=="; }; }; - "@types/babel__generator-7.6.1" = { + "@types/babel__generator-7.6.2" = { name = "_at_types_slash_babel__generator"; packageName = "@types/babel__generator"; - version = "7.6.1"; + version = "7.6.2"; src = fetchurl { - url = "https://registry.npmjs.org/@types/babel__generator/-/babel__generator-7.6.1.tgz"; - sha512 = "bBKm+2VPJcMRVwNhxKu8W+5/zT7pwNEqeokFOmbvVSqGzFneNxYcEBro9Ac7/N9tlsaPYnZLK8J1LWKkMsLAew=="; + url = "https://registry.npmjs.org/@types/babel__generator/-/babel__generator-7.6.2.tgz"; + sha512 = "MdSJnBjl+bdwkLskZ3NGFp9YcXGx5ggLpQQPqtgakVhsWK0hTtNYhjpZLlWQTviGTvF8at+Bvli3jV7faPdgeQ=="; }; }; - "@types/babel__template-7.0.2" = { + "@types/babel__template-7.0.3" = { name = "_at_types_slash_babel__template"; packageName = "@types/babel__template"; - version = "7.0.2"; + version = "7.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/@types/babel__template/-/babel__template-7.0.2.tgz"; - sha512 = "/K6zCpeW7Imzgab2bLkLEbz0+1JlFSrUMdw7KoIIu+IUdu51GWaBZpd3y1VXGVXzynvGa4DaIaxNZHiON3GXUg=="; + url = "https://registry.npmjs.org/@types/babel__template/-/babel__template-7.0.3.tgz"; + sha512 = "uCoznIPDmnickEi6D0v11SBpW0OuVqHJCa7syXqQHy5uktSCreIlt0iglsCnmvz8yCb38hGcWeseA8cWJSwv5Q=="; }; }; - "@types/babel__traverse-7.0.13" = { + "@types/babel__traverse-7.0.15" = { name = "_at_types_slash_babel__traverse"; packageName = "@types/babel__traverse"; - version = "7.0.13"; + version = "7.0.15"; src = fetchurl { - url = "https://registry.npmjs.org/@types/babel__traverse/-/babel__traverse-7.0.13.tgz"; - sha512 = "i+zS7t6/s9cdQvbqKDARrcbrPvtJGlbYsMkazo03nTAK3RX9FNrLllXys22uiTGJapPOTZTQ35nHh4ISph4SLQ=="; + url = "https://registry.npmjs.org/@types/babel__traverse/-/babel__traverse-7.0.15.tgz"; + sha512 = "Pzh9O3sTK8V6I1olsXpCfj2k/ygO2q1X0vhhnDrEQyYLHZesWz+zMZMVcwXLCYf0U36EtmyYaFGPfXlTtDHe3A=="; }; }; "@types/color-name-1.1.1" = { @@ -1210,15 +1246,6 @@ let sha512 = "Q1y515GcOdTHgagaVFhHnIFQ38ygs/kmxdNpvpou+raI9UO3YZcHDngBSYKQklcKlvA7iuQlmIKbzvmxcOE9CQ=="; }; }; - "@types/eslint-visitor-keys-1.0.0" = { - name = "_at_types_slash_eslint-visitor-keys"; - packageName = "@types/eslint-visitor-keys"; - version = "1.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/@types/eslint-visitor-keys/-/eslint-visitor-keys-1.0.0.tgz"; - sha512 = "OCutwjDZ4aFS6PB1UZ988C4YgwlBHJd6wCeQqaLdmadZ/7e+w79+hbMUFC1QXDNCmdyoRfAFdm0RypzwR+Qpag=="; - }; - }; "@types/graceful-fs-4.1.3" = { name = "_at_types_slash_graceful-fs"; packageName = "@types/graceful-fs"; @@ -1264,40 +1291,40 @@ let sha512 = "nwKNbvnwJ2/mndE9ItP/zc2TCzw6uuodnF4EHYWD+gCQDVBuRQL5UzbZD0/ezy1iKsFU2ZQiDqg4M9dN4+wZgA=="; }; }; - "@types/jest-26.0.10" = { + "@types/jest-26.0.14" = { name = "_at_types_slash_jest"; packageName = "@types/jest"; - version = "26.0.10"; + version = "26.0.14"; src = fetchurl { - url = "https://registry.npmjs.org/@types/jest/-/jest-26.0.10.tgz"; - sha512 = "i2m0oyh8w/Lum7wWK/YOZJakYF8Mx08UaKA1CtbmFeDquVhAEdA7znacsVSf2hJ1OQ/OfVMGN90pw/AtzF8s/Q=="; + url = "https://registry.npmjs.org/@types/jest/-/jest-26.0.14.tgz"; + sha512 = "Hz5q8Vu0D288x3iWXePSn53W7hAjP0H7EQ6QvDO9c7t46mR0lNOLlfuwQ+JkVxuhygHzlzPX+0jKdA3ZgSh+Vg=="; }; }; - "@types/json-schema-7.0.5" = { + "@types/json-schema-7.0.6" = { name = "_at_types_slash_json-schema"; packageName = "@types/json-schema"; 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packageName = "@types/node"; - version = "14.6.2"; + version = "14.11.2"; src = fetchurl { - url = "https://registry.npmjs.org/@types/node/-/node-14.6.2.tgz"; - sha512 = "onlIwbaeqvZyniGPfdw/TEhKIh79pz66L1q06WUQqJLnAb6wbjvOtepLYTGHTqzdXgBYIE3ZdmqHDGsRsbBz7A=="; + url = "https://registry.npmjs.org/@types/node/-/node-14.11.2.tgz"; + sha512 = "jiE3QIxJ8JLNcb1Ps6rDbysDhN4xa8DJJvuC9prr6w+1tIh+QAbYyNF3tyiZNLDBIuBCf4KEcV2UvQm/V60xfA=="; }; }; "@types/normalize-package-data-2.4.0" = { @@ -1309,13 +1336,13 @@ let sha512 = "f5j5b/Gf71L+dbqxIpQ4Z2WlmI/mPJ0fOkGGmFgtb6sAu97EPczzbS3/tJKxmcYDj55OX6ssqwDAWOHIYDRDGA=="; }; }; - "@types/prettier-2.1.0" = { + "@types/prettier-2.1.1" = { name = "_at_types_slash_prettier"; packageName = "@types/prettier"; - version = "2.1.0"; + version = "2.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/@types/prettier/-/prettier-2.1.0.tgz"; - sha512 = "hiYA88aHiEIgDmeKlsyVsuQdcFn3Z2VuFd/Xm/HCnGnPD8UFU5BM128uzzRVVGEzKDKYUrRsRH9S2o+NUy/3IA=="; + url = "https://registry.npmjs.org/@types/prettier/-/prettier-2.1.1.tgz"; 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packageName = "@typescript-eslint/eslint-plugin"; - version = "3.10.1"; + version = "4.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/@typescript-eslint/eslint-plugin/-/eslint-plugin-3.10.1.tgz"; - sha512 = "PQg0emRtzZFWq6PxBcdxRH3QIQiyFO3WCVpRL3fgj5oQS3CDs3AeAKfv4DxNhzn8ITdNJGJ4D3Qw8eAJf3lXeQ=="; + url = "https://registry.npmjs.org/@typescript-eslint/eslint-plugin/-/eslint-plugin-4.2.0.tgz"; + sha512 = "zBNRkzvLSwo6y5TG0DVcmshZIYBHKtmzD4N+LYnfTFpzc4bc79o8jNRSb728WV7A4Cegbs+MV5IRAj8BKBgOVQ=="; }; }; - "@typescript-eslint/experimental-utils-2.34.0" = { + "@typescript-eslint/experimental-utils-4.2.0" = { name = "_at_typescript-eslint_slash_experimental-utils"; packageName = "@typescript-eslint/experimental-utils"; - version = "2.34.0"; + version = "4.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/@typescript-eslint/experimental-utils/-/experimental-utils-2.34.0.tgz"; - sha512 = "eS6FTkq+wuMJ+sgtuNTtcqavWXqsflWcfBnlYhg/nS4aZ1leewkXGbvBhaapn1q6qf4M71bsR1tez5JTRMuqwA=="; 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+ version = "2.0.5"; src = fetchurl { - url = "https://registry.npmjs.org/abab/-/abab-2.0.4.tgz"; - sha512 = "Eu9ELJWCz/c1e9gTiCY+FceWxcqzjYEbqMgtndnuSqZSUCOL73TWNK2mHfIj4Cw2E/ongOp+JISVNCmovt2KYQ=="; + url = "https://registry.npmjs.org/abab/-/abab-2.0.5.tgz"; + sha512 = "9IK9EadsbHo6jLWIpxpR6pL0sazTXV6+SQv25ZB+F7Bj9mJNaOc4nCRabwd5M/JwmUa8idz6Eci6eKfJryPs6Q=="; }; }; "acorn-7.4.0" = { @@ -1453,13 +1471,13 @@ let sha512 = "ZQl7LOWaF5ePqqcX4hLuv/bLXYQNfNWw2c0/yX/TsPRKamzHcTGQnlCjHT3TsmkOUVEPS3crCxiPfdzE/Trlhg=="; }; }; - "acorn-jsx-5.2.0" = { + "acorn-jsx-5.3.1" = { name = "acorn-jsx"; packageName = "acorn-jsx"; - version = "5.2.0"; + version = "5.3.1"; src = fetchurl { - url = "https://registry.npmjs.org/acorn-jsx/-/acorn-jsx-5.2.0.tgz"; - sha512 = "HiUX/+K2YpkpJ+SzBffkM/AQ2YE03S0U1kjTLVpoJdhZMOWy8qvXVN9JdLqv2QsaQ6MPYQIuNmwD8zOiYUofLQ=="; + url = "https://registry.npmjs.org/acorn-jsx/-/acorn-jsx-5.3.1.tgz"; + sha512 = "K0Ptm/47OKfQRpNQ2J/oIN/3QYiK6FwW+eJbILhsdxh2WTLdl+30o8aGdTbm5JbffpFFAg/g+zi1E+jvJha5ng=="; }; }; "acorn-walk-7.2.0" = { @@ -1480,13 +1498,13 @@ let sha512 = "01q25QQDwLSsyfhrKbn8yuur+JNw0H+0Y4JiGIKd3z9aYk/w/2kxD/Upc+t2ZBBSUNff50VjPsSW2YxM8QYKVg=="; }; }; - "ajv-6.12.4" = { + "ajv-6.12.5" = { name = "ajv"; packageName = "ajv"; - version = "6.12.4"; + version = "6.12.5"; src = fetchurl { - url = "https://registry.npmjs.org/ajv/-/ajv-6.12.4.tgz"; - sha512 = "eienB2c9qVQs2KWexhkrdMLVDoIQCz5KSeLxwg9Lzk4DOfBtIK9PQwwufcsn1jjGuf9WZmqPMbGxOzfcuphJCQ=="; + url = "https://registry.npmjs.org/ajv/-/ajv-6.12.5.tgz"; + sha512 = "lRF8RORchjpKG50/WFf8xmg7sgCLFiYNNnqdKflk63whMQcWR5ngGjiSXkL9bjxy6B2npOK2HSMN49jEBMSkag=="; }; }; "ansi-colors-4.1.1" = { @@ -1624,6 +1642,15 @@ let sha1 = "e39b09aea9def866a8f206e288af63919bae39c4"; }; }; + "array-union-2.1.0" = { + name = "array-union"; + packageName = "array-union"; + version = "2.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/array-union/-/array-union-2.1.0.tgz"; + sha512 = "HGyxoOTYUyCM6stUe6EJgnd4EoewAI7zMdfqO+kGjnlZmBDz/cR5pf8r/cR4Wq60sL/p0IkcjUEEPwS3GFrIyw=="; + }; + }; "array-unique-0.3.2" = { name = "array-unique"; packageName = "array-unique"; @@ -1894,13 +1921,13 @@ let sha512 = "9o5UecI3GhkpM6DrXr69PblIuWxPKk9Y0jHBRhdocZ2y7YECBFCsHm79Pr3OyR2AvjhDkabFJaDJMYRazHgsow=="; }; }; - "browserslist-4.14.0" = { + "browserslist-4.14.5" = { name = "browserslist"; packageName = "browserslist"; - version = "4.14.0"; + version = "4.14.5"; src = fetchurl { - url = "https://registry.npmjs.org/browserslist/-/browserslist-4.14.0.tgz"; - sha512 = "pUsXKAF2lVwhmtpeA3LJrZ76jXuusrNyhduuQs7CDFf9foT4Y38aQOserd2lMe5DSSrjf3fx34oHwryuvxAUgQ=="; + url = "https://registry.npmjs.org/browserslist/-/browserslist-4.14.5.tgz"; + sha512 = "Z+vsCZIvCBvqLoYkBFTwEYH3v5MCQbsAjp50ERycpOjnPmolg1Gjy4+KaWWpm8QOJt9GHkhdqAl14NpCX73CWA=="; }; }; "bser-2.1.1" = { @@ -1975,13 +2002,13 @@ let sha512 = "8KMDF1Vz2gzOq54ONPJS65IvTUaB1cHJ2DMM7MbPmLZljDH1qpzzLsWdiN9pHh6qvkRVDTi/07+eNGch/oLU4w=="; }; }; - "caniuse-lite-1.0.30001119" = { + "caniuse-lite-1.0.30001137" = { name = "caniuse-lite"; packageName = "caniuse-lite"; - version = "1.0.30001119"; + version = "1.0.30001137"; src = fetchurl { - url = "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001119.tgz"; - sha512 = "Hpwa4obv7EGP+TjkCh/wVvbtNJewxmtg4yVJBLFnxo35vbPapBr138bUWENkb5j5L9JZJ9RXLn4OrXRG/cecPQ=="; + url = "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001137.tgz"; + sha512 = "54xKQZTqZrKVHmVz0+UvdZR6kQc7pJDgfhsMYDG19ID1BWoNnDMFm5Q3uSBSU401pBvKYMsHAt9qhEDcxmk8aw=="; }; }; "capture-exit-2.0.0" = { @@ -2380,13 +2407,13 @@ let sha512 = "bC7ElrdJaJnPbAP+1EotYvqZsb3ecl5wi6Bfi6BJTUcNowp6cvspg0jXznRTKDjm/E7AdgFBVeAPVMNcKGsHMA=="; }; }; - "debug-4.1.1" = { + "debug-4.2.0" = { name = "debug"; packageName = "debug"; - version = "4.1.1"; + version = "4.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/debug/-/debug-4.1.1.tgz"; - sha512 = "pYAIzeRo8J6KPEaJ0VWOh5Pzkbw/RetuzehGM7QRRX5he4fPHx2rdKMB256ehJCkX+XRQm16eZLqLNS8RSZXZw=="; + url = "https://registry.npmjs.org/debug/-/debug-4.2.0.tgz"; + sha512 = "IX2ncY78vDTjZMFUdmsvIRFY2Cf4FnD0wRs+nQwJU8Lu99/tPFdb0VybiiMTPe3I6rQmwsqQqRBvxU+bZ/I8sg=="; }; }; "decamelize-1.2.0" = { @@ -2506,6 +2533,24 @@ let sha1 = "84c6e159b81904fdca59a0ef44cd870d31250f9a"; }; }; + "depd-1.1.2" = { + name = "depd"; + packageName = "depd"; + version = "1.1.2"; + src = fetchurl { + url = "https://registry.npmjs.org/depd/-/depd-1.1.2.tgz"; + sha1 = "9bcd52e14c097763e749b274c4346ed2e560b5a9"; + }; + }; + "destroy-1.0.4" = { + name = "destroy"; + packageName = "destroy"; + version = "1.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/destroy/-/destroy-1.0.4.tgz"; + sha1 = "978857442c44749e4206613e37946205826abd80"; + }; + }; "detect-libc-1.0.3" = { name = "detect-libc"; packageName = "detect-libc"; @@ -2542,6 +2587,15 @@ let sha512 = "5j5vdRcw3CNctePNYN0Wy2e/JbWT6cAYnXv5OuqPhDpyCGc0uLu2TK0zOCJWNB9kOIfYMSpIulRaDgIi4HJ6Ig=="; }; }; + "dir-glob-3.0.1" = { + name = "dir-glob"; + packageName = "dir-glob"; + version = "3.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/dir-glob/-/dir-glob-3.0.1.tgz"; + sha512 = "WkrWp9GR4KXfKGYzOLmTuGVi1UWFfws377n9cc55/tb6DuqyF6pcQ5AbiHEshaDpY9v6oaSr2XCDidGmMwdzIA=="; + }; + }; "doctrine-3.0.0" = { name = "doctrine"; packageName = "doctrine"; @@ -2578,13 +2632,22 @@ let sha1 = "3a83a904e54353287874c564b7549386849a98c9"; }; }; - "electron-to-chromium-1.3.555" = { + "ee-first-1.1.1" = { + name = "ee-first"; + packageName = "ee-first"; + version = "1.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/ee-first/-/ee-first-1.1.1.tgz"; + sha1 = "590c61156b0ae2f4f0255732a158b266bc56b21d"; + }; + }; + "electron-to-chromium-1.3.573" = { name = "electron-to-chromium"; packageName = "electron-to-chromium"; - version = "1.3.555"; + version = "1.3.573"; src = fetchurl { - url = "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.3.555.tgz"; - sha512 = "/55x3nF2feXFZ5tdGUOr00TxnUjUgdxhrn+eCJ1FAcoAt+cKQTjQkUC5XF4frMWE1R5sjHk+JueuBalimfe5Pg=="; + url = "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.3.573.tgz"; + sha512 = "oypaNmexr8w0m2GX67fGLQ0Xgsd7uXz7GcwaHZ9eW3ZdQ8uA2+V/wXmLdMTk3gcacbqQGAN7CXWG3fOkfKYftw=="; }; }; "emittery-0.7.1" = { @@ -2623,6 +2686,15 @@ let sha512 = "AKrN98kuwOzMIdAizXGI86UFBoo26CL21UM763y1h/GMSJ4/OHU9k2YlsmBpyScFo/wbLzWQJBMCW4+IO3/+OQ=="; }; }; + "encodeurl-1.0.2" = { + name = "encodeurl"; + packageName = "encodeurl"; + version = "1.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/encodeurl/-/encodeurl-1.0.2.tgz"; + sha1 = "ad3ff4c86ec2d029322f5a02c3a9a606c95b3f59"; + }; + }; "end-of-stream-1.4.4" = { name = "end-of-stream"; packageName = "end-of-stream"; @@ -2650,6 +2722,33 @@ let sha512 = "7dFHNmqeFSEt2ZBsCriorKnn3Z2pj+fd9kmI6QoWw4//DL+icEBfc0U7qJCisqrTsKTjw4fNFy2pW9OqStD84g=="; }; }; + "es-abstract-1.17.6" = { + name = "es-abstract"; + packageName = "es-abstract"; + version = "1.17.6"; + src = fetchurl { + url = "https://registry.npmjs.org/es-abstract/-/es-abstract-1.17.6.tgz"; + sha512 = "Fr89bON3WFyUi5EvAeI48QTWX0AyekGgLA8H+c+7fbfCkJwRWRMLd8CQedNEyJuoYYhmtEqY92pgte1FAhBlhw=="; + }; + }; + "es-abstract-1.18.0-next.0" = { + name = "es-abstract"; + packageName = "es-abstract"; + version = "1.18.0-next.0"; + src = fetchurl { + url = "https://registry.npmjs.org/es-abstract/-/es-abstract-1.18.0-next.0.tgz"; + sha512 = "elZXTZXKn51hUBdJjSZGYRujuzilgXo8vSPQzjGYXLvSlGiCo8VO8ZGV3kjo9a0WNJJ57hENagwbtlRuHuzkcQ=="; + }; + }; + "es-to-primitive-1.2.1" = { + name = "es-to-primitive"; + packageName = "es-to-primitive"; + version = "1.2.1"; + src = fetchurl { + url = "https://registry.npmjs.org/es-to-primitive/-/es-to-primitive-1.2.1.tgz"; + sha512 = "QCOllgZJtaUo9miYBcLChTUaHNjJF3PYs1VidD7AwiEj1kYxKeQTctLAezAOH5ZKRH0g2IgPn6KwB4IT8iRpvA=="; + }; + }; "es5-ext-0.10.53" = { name = "es5-ext"; packageName = "es5-ext"; @@ -2704,13 +2803,22 @@ let sha512 = "NJ6Yn3FuDinBaBRWl/q5X/s4koRHBrgKAu+yGI6JCBeiu3qrcbJhwT2GeR/EXVfylRk8dpQVJoLEFhK+Mu31NA=="; }; }; - "escalade-3.0.2" = { + "escalade-3.1.0" = { name = "escalade"; packageName = "escalade"; - version = "3.0.2"; + version = "3.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/escalade/-/escalade-3.0.2.tgz"; - sha512 = "gPYAU37hYCUhW5euPeR+Y74F7BL+IBsV93j5cvGriSaD1aG6MGsqsV1yamRdrWrb2j3aiZvb0X+UBOWpx3JWtQ=="; + url = "https://registry.npmjs.org/escalade/-/escalade-3.1.0.tgz"; + sha512 = "mAk+hPSO8fLDkhV7V0dXazH5pDc6MrjBTPyD3VeKzxnVFjH1MIxbCdqGZB9O8+EwWakZs3ZCbDS4IpRt79V1ig=="; + }; + }; + "escape-html-1.0.3" = { + name = "escape-html"; + packageName = "escape-html"; + version = "1.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/escape-html/-/escape-html-1.0.3.tgz"; + sha1 = "0258eae4d3d0c0974de1c169188ef0051d1d1988"; }; }; "escape-string-regexp-1.0.5" = { @@ -2740,13 +2848,13 @@ let sha512 = "qFcX0XJkdg+PB3xjZZG/wKSuT1PnQWx57+TVSjIMmILd2yC/6ByYElPwJnslDsuWuSAp4AwJGumarAAmJch5Kw=="; }; }; - "eslint-7.7.0" = { + "eslint-7.10.0" = { name = "eslint"; packageName = "eslint"; - version = "7.7.0"; + version = "7.10.0"; src = fetchurl { - url = "https://registry.npmjs.org/eslint/-/eslint-7.7.0.tgz"; - sha512 = "1KUxLzos0ZVsyL81PnRN335nDtQ8/vZUD6uMtWbF+5zDtjKcsklIi78XoE0MVL93QvWTu+E5y44VyyCsOMBrIg=="; + url = "https://registry.npmjs.org/eslint/-/eslint-7.10.0.tgz"; + sha512 = "BDVffmqWl7JJXqCjAK6lWtcQThZB/aP1HXSH1JKwGwv0LQEdvpR7qzNrUT487RM39B5goWuboFad5ovMBmD8yA=="; }; }; "eslint-config-google-0.14.0" = { @@ -2758,22 +2866,22 @@ let sha512 = "WsbX4WbjuMvTdeVL6+J3rK1RGhCTqjsFjX7UMSMgZiyxxaNLkoJENbrGExzERFeoTpGw3F3FypTiWAP9ZXzkEw=="; }; }; - "eslint-plugin-jest-23.20.0" = { + "eslint-plugin-jest-24.0.2" = { name = "eslint-plugin-jest"; packageName = "eslint-plugin-jest"; - version = "23.20.0"; + version = "24.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/eslint-plugin-jest/-/eslint-plugin-jest-23.20.0.tgz"; - sha512 = "+6BGQt85OREevBDWCvhqj1yYA4+BFK4XnRZSGJionuEYmcglMZYLNNBBemwzbqUAckURaHdJSBcjHPyrtypZOw=="; + url = "https://registry.npmjs.org/eslint-plugin-jest/-/eslint-plugin-jest-24.0.2.tgz"; + sha512 = "DSBLNpkKDOpUJQkTGSs5sVJWsu0nDyQ2rYxkr0Eh7nrkc5bMUr/dlDbtTj3l8y6UaCVsem6rryF1OZrKnz1S5g=="; }; }; - "eslint-scope-5.1.0" = { + "eslint-scope-5.1.1" = { name = "eslint-scope"; packageName = "eslint-scope"; - version = "5.1.0"; + version = "5.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/eslint-scope/-/eslint-scope-5.1.0.tgz"; - sha512 = "iiGRvtxWqgtx5m8EyQUJihBloE4EnYeGE/bz1wSPwJE6tZuJUtHlhqDM4Xj2ukE8Dyy1+HCZ4hE0fzIVMzb58w=="; + url = "https://registry.npmjs.org/eslint-scope/-/eslint-scope-5.1.1.tgz"; + sha512 = "2NxwbF/hZ0KpepYN0cNbo+FN6XoK7GaHlQhgx/hIZl6Va0bF45RQOOwhLIy8lQDbuCiadSLCBnH2CFYquit5bw=="; }; }; "eslint-utils-2.1.0" = { @@ -2794,6 +2902,15 @@ let sha512 = "6J72N8UNa462wa/KFODt/PJ3IU60SDpC3QXC1Hjc1BXXpfL2C9R5+AU7jhe0F6GREqVMh4Juu+NY7xn+6dipUQ=="; }; }; + "eslint-visitor-keys-2.0.0" = { + name = "eslint-visitor-keys"; + packageName = "eslint-visitor-keys"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/eslint-visitor-keys/-/eslint-visitor-keys-2.0.0.tgz"; + sha512 = "QudtT6av5WXels9WjIM7qz1XD1cWGvX4gGXvp/zBn9nXG02D0utdU3Em2m/QjTnrsk6bBjmCygl3rmj118msQQ=="; + }; + }; "espree-7.3.0" = { name = "espree"; packageName = "espree"; @@ -2821,13 +2938,13 @@ let sha512 = "olpvt9QG0vniUBZspVRN6lwB7hOZoTRtT+jzR+tS4ffYx2mzbw+z0XCOk44aaLYKApNX5nMm+E+P6o25ip/DHQ=="; }; }; - "esrecurse-4.2.1" = { + "esrecurse-4.3.0" = { name = "esrecurse"; packageName = "esrecurse"; - version = "4.2.1"; + version = "4.3.0"; src = fetchurl { - url = "https://registry.npmjs.org/esrecurse/-/esrecurse-4.2.1.tgz"; - sha512 = "64RBB++fIOAXPw3P9cy89qfMlvZEXZkqqJkjqqXIvzP5ezRZjW+lPWjw35UX/3EhUPFYbg5ER4JYgDw4007/DQ=="; + url = "https://registry.npmjs.org/esrecurse/-/esrecurse-4.3.0.tgz"; + sha512 = "KmfKL3b6G+RXvP8N1vr3Tq1kL/oCFgn2NYXEtqP8/L3pKapUA4G8cFVaoF3SU323CD4XypR/ffioHmkti6/Tag=="; }; }; "estraverse-4.3.0" = { @@ -2857,6 +2974,15 @@ let sha512 = "kVscqXk4OCp68SZ0dkgEKVi6/8ij300KBWTJq32P/dYeWTSwK41WyTxalN1eRmA5Z9UU/LX9D7FWSmV9SAYx6g=="; }; }; + "etag-1.8.1" = { + name = "etag"; + packageName = "etag"; + version = "1.8.1"; + src = fetchurl { + url = "https://registry.npmjs.org/etag/-/etag-1.8.1.tgz"; + sha1 = "41ae2eeb65efa62268aebfea83ac7d79299b0887"; + }; + }; "event-emitter-0.3.5" = { name = "event-emitter"; packageName = "event-emitter"; @@ -2866,6 +2992,15 @@ let sha1 = "df8c69eef1647923c7157b9ce83840610b02cc39"; }; }; + "eventemitter3-4.0.7" = { + name = "eventemitter3"; + packageName = "eventemitter3"; + version = "4.0.7"; + src = fetchurl { + url = "https://registry.npmjs.org/eventemitter3/-/eventemitter3-4.0.7.tgz"; + sha512 = "8guHBZCwKnFhYdHr2ysuRWErTwhoN2X8XELRlrRwpmfeY2jjuUN4taQMsULKUVo1K4DvZl+0pgfyoysHxvmvEw=="; + }; + }; "exec-sh-0.3.4" = { name = "exec-sh"; packageName = "exec-sh"; @@ -2992,6 +3127,15 @@ let sha512 = "f3qQ9oQy9j2AhBe/H9VC91wLmKBCCU/gDOnKNAYG5hswO7BLKj09Hc5HYNz9cGI++xlpDCIgDaitVs03ATR84Q=="; }; }; + "fast-glob-3.2.4" = { + name = "fast-glob"; + packageName = "fast-glob"; + version = "3.2.4"; + src = fetchurl { + url = "https://registry.npmjs.org/fast-glob/-/fast-glob-3.2.4.tgz"; + sha512 = "kr/Oo6PX51265qeuCYsyGypiO5uJFgBS0jksyG7FUeCyQzNwYnzrNIMR1NXfkZXsMYXYLRAHgISHBz8gQcxKHQ=="; + }; + }; "fast-json-stable-stringify-2.1.0" = { name = "fast-json-stable-stringify"; packageName = "fast-json-stable-stringify"; @@ -3019,6 +3163,15 @@ let sha512 = "Utm6CdzT+6xsDk2m8S6uL8VHxNwI6Jub+e9NYTcAms28T84pTa25GJQV9j0CY0N1rM8hK4x6grpF2BQf+2qwVA=="; }; }; + "fastq-1.8.0" = { + name = "fastq"; + packageName = "fastq"; + version = "1.8.0"; + src = fetchurl { + url = "https://registry.npmjs.org/fastq/-/fastq-1.8.0.tgz"; + sha512 = "SMIZoZdLh/fgofivvIkmknUXyPnvxRE3DhtZ5Me3Mrsk5gyPL42F0xr51TdRXskBxHfMp+07bcYzfsYEsSQA9Q=="; + }; + }; "fb-watchman-2.0.1" = { name = "fb-watchman"; packageName = "fb-watchman"; @@ -3073,6 +3226,15 @@ let sha512 = "qOo9F+dMUmC2Lcb4BbVvnKJxTPjCm+RRpe4gDuGrzkL7mEVl/djYSu2OdQ2Pa302N4oqkSg9ir6jaLWJ2USVpQ=="; }; }; + "finalhandler-1.1.2" = { + name = "finalhandler"; + packageName = "finalhandler"; + version = "1.1.2"; + src = fetchurl { + url = "https://registry.npmjs.org/finalhandler/-/finalhandler-1.1.2.tgz"; + sha512 = "aAWcW57uxVNrQZqFXjITpW3sIUQmHGG3qSb9mUah9MgMC4NeWhNOlNjXEYq3HjRAvL6arUviZGGJsBg6z0zsWA=="; + }; + }; "find-up-4.1.0" = { name = "find-up"; packageName = "find-up"; @@ -3154,6 +3316,15 @@ let sha1 = "4290fad27f13e89be7f33799c6bc5a0abfff0d19"; }; }; + "fresh-0.5.2" = { + name = "fresh"; + packageName = "fresh"; + version = "0.5.2"; + src = fetchurl { + url = "https://registry.npmjs.org/fresh/-/fresh-0.5.2.tgz"; + sha1 = "3d8cadd90d976569fa835ab1f8e4b23a105605a7"; + }; + }; "fs-constants-1.0.0" = { name = "fs-constants"; packageName = "fs-constants"; @@ -3370,6 +3541,15 @@ let sha512 = "BWICuzzDvDoH54NHKCseDanAhE3CeDorgDL5MT6LMXXj2WCnd9UC2szdk4AWLfjdgNBCXLUanXYcpBBKOSWGwg=="; }; }; + "globby-11.0.1" = { + name = "globby"; + packageName = "globby"; + version = "11.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/globby/-/globby-11.0.1.tgz"; + sha512 = "iH9RmgwCmUJHi2z5o2l3eTtGBtXek1OYlHrbcxOYugyHLmAsZrPj43OtHThd62Buh/Vv6VyCBD2bdyWcGNQqoQ=="; + }; + }; "glossy-0.1.7" = { name = "glossy"; packageName = "glossy"; @@ -3424,6 +3604,15 @@ let sha512 = "nmT2T0lljbxdQZfspsno9hgrG3Uir6Ks5afism62poxqBM6sDnMEuPmzTq8XN0OEwqKLLdh1jQI3qyE66Nzb3w=="; }; }; + "has-1.0.3" = { + name = "has"; + packageName = "has"; + version = "1.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/has/-/has-1.0.3.tgz"; + sha512 = "f2dvO0VU6Oej7RkWJGrehjbzMAjFp5/VKPp5tTpWIV4JHHZK1/BxbFRtf/siA2SWTe09caDmVtYYzWEIbBS4zw=="; + }; + }; "has-flag-3.0.0" = { name = "has-flag"; packageName = "has-flag"; @@ -3505,13 +3694,13 @@ let sha1 = "8f2d508d0600b4a456da2f086556e7e5c056a3c6"; }; }; - "highlight.js-10.1.2" = { + "highlight.js-10.2.0" = { name = "highlight.js"; packageName = "highlight.js"; - version = "10.1.2"; + version = "10.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/highlight.js/-/highlight.js-10.1.2.tgz"; - sha512 = "Q39v/Mn5mfBlMff9r+zzA+gWxRsCRKwEMvYTiisLr/XUiFI/4puWt0Ojdko3R3JCNWGdOWaA5g/Yxqa23kC5AA=="; + url = "https://registry.npmjs.org/highlight.js/-/highlight.js-10.2.0.tgz"; + sha512 = "OryzPiqqNCfO/wtFo619W+nPYALM6u7iCQkum4bqRmmlcTikOkmlL06i009QelynBPAlNByTQU6cBB2cOBQtCw=="; }; }; "hosted-git-info-2.8.8" = { @@ -3541,6 +3730,24 @@ let sha512 = "H2iMtd0I4Mt5eYiapRdIDjp+XzelXQ0tFE4JS7YFwFevXXMmOp9myNrUvCg0D6ws8iqkRPBfKHgbwig1SmlLfg=="; }; }; + "http-errors-1.7.3" = { + name = "http-errors"; + packageName = "http-errors"; + version = "1.7.3"; + src = fetchurl { + url = "https://registry.npmjs.org/http-errors/-/http-errors-1.7.3.tgz"; + sha512 = "ZTTX0MWrsQ2ZAhA1cejAwDLycFsd7I7nVtnkT3Ol0aqodaKW+0CTZDQ1uBv5whptCnc8e8HeRRJxRs0kmm/Qfw=="; + }; + }; + "http-proxy-1.18.1" = { + name = "http-proxy"; + packageName = "http-proxy"; + version = "1.18.1"; + src = fetchurl { + url = "https://registry.npmjs.org/http-proxy/-/http-proxy-1.18.1.tgz"; + sha512 = "7mz/721AbnJwIVbnaSv1Cz3Am0ZLT/UBwkC92VlxhXv/k/BBQfM2fXElQNC27BVGr0uwUpplYPQM9LnaBMR5NQ=="; + }; + }; "http-signature-1.2.0" = { name = "http-signature"; packageName = "http-signature"; @@ -3604,6 +3811,15 @@ let sha512 = "cyFDKrqc/YdcWFniJhzI42+AzS+gNwmUzOSFcRCQYwySuBBBy/KjuxWLZ/FHEH6Moq1NizMOBWyTcv8O4OZIMg=="; }; }; + "ignore-5.1.8" = { + name = "ignore"; + packageName = "ignore"; + version = "5.1.8"; + src = fetchurl { + url = "https://registry.npmjs.org/ignore/-/ignore-5.1.8.tgz"; + sha512 = "BMpfD7PpiETpBl/A6S498BaIJ6Y/ABT93ETbby2fP00v4EbvPBXWEoaR1UBPKs3iR53pJY7EtZk5KACI57i1Uw=="; + }; + }; "import-fresh-3.2.1" = { name = "import-fresh"; packageName = "import-fresh"; @@ -3748,6 +3964,15 @@ let sha512 = "NcdALwpXkTm5Zvvbk7owOUSvVvBKDgKP5/ewfXEznmQFfs4ZRmanOeKBTjRVjka3QFoN6XJ+9F3USqfHqTaU5w=="; }; }; + "is-callable-1.2.2" = { + name = "is-callable"; + packageName = "is-callable"; + version = "1.2.2"; + src = fetchurl { + url = "https://registry.npmjs.org/is-callable/-/is-callable-1.2.2.tgz"; + sha512 = "dnMqspv5nU3LoewK2N/y7KLtxtakvTuaCsU9FU50/QDmdbHNy/4/JuRtMHqRU22o3q+W89YQndQEeCVwK+3qrA=="; + }; + }; "is-ci-2.0.0" = { name = "is-ci"; packageName = "is-ci"; @@ -3775,6 +4000,15 @@ let sha512 = "jbRXy1FmtAoCjQkVmIVYwuuqDFUbaOeDjmed1tOGPrsMhtJA4rD9tkgA0F1qJ3gRFRXcHYVkdeaP50Q5rE/jLQ=="; }; }; + "is-date-object-1.0.2" = { + name = "is-date-object"; + packageName = "is-date-object"; + version = "1.0.2"; + src = fetchurl { + url = "https://registry.npmjs.org/is-date-object/-/is-date-object-1.0.2.tgz"; + sha512 = "USlDT524woQ08aoZFzh3/Z6ch9Y/EWXEHQ/AaRN0SkKq4t2Jw2R2339tSXmwuVoY7LLlBCbOIlx2myP/L5zk0g=="; + }; + }; "is-descriptor-0.1.6" = { name = "is-descriptor"; packageName = "is-descriptor"; @@ -3892,6 +4126,15 @@ let sha1 = "6910bca5da8c95e784b5751b976cf5a10fee36d2"; }; }; + "is-negative-zero-2.0.0" = { + name = "is-negative-zero"; + packageName = "is-negative-zero"; + version = "2.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/is-negative-zero/-/is-negative-zero-2.0.0.tgz"; + sha1 = "9553b121b0fac28869da9ed459e20c7543788461"; + }; + }; "is-number-3.0.0" = { name = "is-number"; packageName = "is-number"; @@ -3928,6 +4171,15 @@ let sha1 = "0c52e54bcca391bb2c494b21e8626d7336c6e397"; }; }; + "is-regex-1.1.1" = { + name = "is-regex"; + packageName = "is-regex"; + version = "1.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/is-regex/-/is-regex-1.1.1.tgz"; + sha512 = "1+QkEcxiLlB7VEyFtyBg94e08OAsvq7FUBgApTq/w2ymCLyKJgDPsybBENVtA7XCQEgEXxKPonG+mvYRxh/LIg=="; + }; + }; "is-relative-1.0.0" = { name = "is-relative"; packageName = "is-relative"; @@ -3955,6 +4207,15 @@ let sha512 = "XCoy+WlUr7d1+Z8GgSuXmpuUFC9fOhRXglJMx+dwLKTkL44Cjd4W1Z5P+BQZpr+cR93aGP4S/s7Ftw6Nd/kiEw=="; }; }; + "is-symbol-1.0.3" = { + name = "is-symbol"; + packageName = "is-symbol"; + version = "1.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/is-symbol/-/is-symbol-1.0.3.tgz"; + sha512 = "OwijhaRSgqvhm/0ZdAcXNZt9lYdKFpcRDT5ULUuYXPoT794UNOdU+gpT6Rzo7b4V2HUl/op6GqY894AZwv9faQ=="; + }; + }; "is-typedarray-1.0.0" = { name = "is-typedarray"; packageName = "is-typedarray"; @@ -4405,13 +4666,13 @@ let sha512 = "OYu7XEzjkCQ3C5Ps3QIZsQfNpqoJyZZA99wd9aWd05NCtC5pWOkShK2mkL6HXQR6/Cy2lbNdPlZBpuQHXE63gA=="; }; }; - "json-parse-even-better-errors-2.3.0" = { + "json-parse-even-better-errors-2.3.1" = { name = "json-parse-even-better-errors"; packageName = "json-parse-even-better-errors"; - version = "2.3.0"; + version = "2.3.1"; src = fetchurl { - url = "https://registry.npmjs.org/json-parse-even-better-errors/-/json-parse-even-better-errors-2.3.0.tgz"; - sha512 = "o3aP+RsWDJZayj1SbHNQAI8x0v3T3SKiGoZlNYfbUP1S3omJQ6i9CnqADqkSPaOAxwua4/1YWx5CM7oiChJt2Q=="; + url = "https://registry.npmjs.org/json-parse-even-better-errors/-/json-parse-even-better-errors-2.3.1.tgz"; + sha512 = "xyFwyhro/JEof6Ghe2iz2NcXoj2sloNsWr/XsERDK/oiPCfaNhl5ONfp+jQdAZRQQ0IJWNzH9zIZF7li91kh2w=="; }; }; "json-schema-0.2.3" = { @@ -4432,15 +4693,6 @@ let sha512 = "xbbCH5dCYU5T8LcEhhuh7HJ88HXuW3qsI3Y0zOZFKfZEHcpWiHU/Jxzk629Brsab/mMiHQti9wMP+845RPe3Vg=="; }; }; - "json-stable-stringify-1.0.1" = { - name = "json-stable-stringify"; - packageName = "json-stable-stringify"; - version = "1.0.1"; - src = fetchurl { - url = "https://registry.npmjs.org/json-stable-stringify/-/json-stable-stringify-1.0.1.tgz"; - sha1 = "9a759d39c5f2ff503fd5300646ed445f88c4f9af"; - }; - }; "json-stable-stringify-without-jsonify-1.0.1" = { name = "json-stable-stringify-without-jsonify"; packageName = "json-stable-stringify-without-jsonify"; @@ -4477,15 +4729,6 @@ let sha512 = "jR2b5v7d2vIOust+w3wtFKZIfpC2pnRmFAhAC/BuweZFQR8qZzxH1OyrQ10HmdVYiXWkYUqPVsz91cG7EL2FBg=="; }; }; - "jsonify-0.0.0" = { - name = "jsonify"; - packageName = "jsonify"; - version = "0.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/jsonify/-/jsonify-0.0.0.tgz"; - sha1 = "2c74b6ee41d93ca51b7b5aaee8f503631d252a73"; - }; - }; "jsprim-1.4.1" = { name = "jsprim"; packageName = "jsprim"; @@ -4720,6 +4963,15 @@ let sha512 = "abv/qOcuPfk3URPfDzmZU1LKmuw8kT+0nIHvKrKgFrwifol/doWcdA4ZqsWQ8ENrFKkd67Mfpo/LovbIUsbt3w=="; }; }; + "merge2-1.4.1" = { + name = "merge2"; + packageName = "merge2"; + version = "1.4.1"; + src = fetchurl { + url = "https://registry.npmjs.org/merge2/-/merge2-1.4.1.tgz"; + sha512 = "8q7VEgMJW4J8tcfVPy8g09NcQwZdbwFEqhe/WZkoIzjn/3TGDwtOCYtXGxA3O8tPzpczCCDgv+P2P5y00ZJOOg=="; + }; + }; "micromatch-3.1.10" = { name = "micromatch"; packageName = "micromatch"; @@ -4738,6 +4990,15 @@ let sha512 = "y7FpHSbMUMoyPbYUSzO6PaZ6FyRnQOpHuKwbo1G+Knck95XVU4QAiKdGEnj5wwoS7PlOgthX/09u5iFJ+aYf5Q=="; }; }; + "mime-1.6.0" = { + name = "mime"; + packageName = "mime"; + version = "1.6.0"; + src = fetchurl { + url = "https://registry.npmjs.org/mime/-/mime-1.6.0.tgz"; + sha512 = "x0Vn8spI+wuJ1O6S7gnbaQg8Pxh4NNHb7KSINmEWKiPE4RKOplvijn+NkmYmmRgP68mc70j2EbeTFRsrswaQeg=="; + }; + }; "mime-db-1.44.0" = { name = "mime-db"; packageName = "mime-db"; @@ -4837,13 +5098,13 @@ let sha512 = "gKLcREMhtuZRwRAfqP3RFW+TK4JqApVBtOIftVgjuABpAtpxhPGaDcfvbhNvD0B8iD1oUr/txX35NjcaY6Ns/A=="; }; }; - "moment-2.27.0" = { + "moment-2.29.0" = { name = "moment"; packageName = "moment"; - version = "2.27.0"; + version = "2.29.0"; src = fetchurl { - url = "https://registry.npmjs.org/moment/-/moment-2.27.0.tgz"; - sha512 = "al0MUK7cpIcglMv3YF13qSgdAIqxHTO7brRtaz3DlSULbqfazqkc5kEjNrLDOM7fsjshoFIihnU8snrP7zUvhQ=="; + url = "https://registry.npmjs.org/moment/-/moment-2.29.0.tgz"; + sha512 = "z6IJ5HXYiuxvFTI6eiQ9dm77uE0gyy1yXNApVHqTcnIKfY9tIwEjlzsZ6u1LQXvVgKeTnv9Xm7NDvJ7lso3MtA=="; }; }; "mqtt-4.2.1" = { @@ -4855,13 +5116,13 @@ let sha512 = "Iv893r+jWlo5GkNcPOfCGwW8M49IixwHiKLFFYTociEymSibUVCORVEjPXWPGzSxhn7BdlUeHicbRmWiv0Crkg=="; }; }; - "mqtt-packet-6.4.0" = { + "mqtt-packet-6.6.0" = { name = "mqtt-packet"; packageName = "mqtt-packet"; - version = "6.4.0"; + version = "6.6.0"; src = fetchurl { - url = "https://registry.npmjs.org/mqtt-packet/-/mqtt-packet-6.4.0.tgz"; - sha512 = "dNd1RPyBolklOR27hgHhy3TxkDk31ZaDu4ljAgJoHlnVsdACH8guwEZhpk3ZMn6GAdH6ENDLgtE285FHIiXzxA=="; + url = "https://registry.npmjs.org/mqtt-packet/-/mqtt-packet-6.6.0.tgz"; + sha512 = "LvghnKMFC70hKWMVykmhJarlO5e7lT3t9s9A2qPCUx+lazL3Mq55U+eCV0eLi7/nRRQYvEUWo/2tTo89EjnCJQ=="; }; }; "ms-2.0.0" = { @@ -4873,6 +5134,15 @@ let sha1 = "5608aeadfc00be6c2901df5f9861788de0d597c8"; }; }; + "ms-2.1.1" = { + name = "ms"; + packageName = "ms"; + version = "2.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/ms/-/ms-2.1.1.tgz"; + sha512 = "tgp+dl5cGk28utYktBsrFqA7HKgrhgPsg6Z/EfhWI4gl1Hwq8B/GmY/0oXZ6nF8hDVesS/FpnYaD/kOWhYQvyg=="; + }; + }; "ms-2.1.2" = { name = "ms"; packageName = "ms"; @@ -4981,13 +5251,13 @@ let sha512 = "46z7DUmcjoYdaWyXouuFNNfUo6eFa94t23c53c+lG/9Cvauk4a98rAUp9672X5dxGdQmLpPzTxzu8f/OeEPaFA=="; }; }; - "node-releases-1.1.60" = { + "node-releases-1.1.61" = { name = "node-releases"; packageName = "node-releases"; - version = "1.1.60"; + version = "1.1.61"; src = fetchurl { - url = "https://registry.npmjs.org/node-releases/-/node-releases-1.1.60.tgz"; - sha512 = "gsO4vjEdQaTusZAEebUWp2a5d7dF5DYoIpDG7WySnk7BuZDW+GPpHXoXXuYawRBr/9t5q54tirPz79kFIWg4dA=="; + url = "https://registry.npmjs.org/node-releases/-/node-releases-1.1.61.tgz"; + sha512 = "DD5vebQLg8jLCOzwupn954fbIiZht05DAZs0k2u8NStSe6h9XdsuIQL8hSRKYiU8WUQRznmSDrKGbv3ObOmC7g=="; }; }; "noop-logger-0.1.1" = { @@ -5107,6 +5377,15 @@ let sha1 = "7e7d858b781bd7c991a41ba975ed3812754e998c"; }; }; + "object-inspect-1.8.0" = { + name = "object-inspect"; + packageName = "object-inspect"; + version = "1.8.0"; + src = fetchurl { + url = "https://registry.npmjs.org/object-inspect/-/object-inspect-1.8.0.tgz"; + sha512 = "jLdtEOB112fORuypAyl/50VRVIBIdVQOSUUGQHzJ4xBSbit81zRarz7GThkEFZy1RceYrWYcPcBFPQwHyAc1gA=="; + }; + }; "object-keys-1.1.1" = { name = "object-keys"; packageName = "object-keys"; @@ -5125,13 +5404,13 @@ let sha1 = "f79c4493af0c5377b59fe39d395e41042dd045bb"; }; }; - "object.assign-4.1.0" = { + "object.assign-4.1.1" = { name = "object.assign"; packageName = "object.assign"; - version = "4.1.0"; + version = "4.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/object.assign/-/object.assign-4.1.0.tgz"; - sha512 = "exHJeq6kBKj58mqGyTQ9DFvrZC/eR6OwxzoM9YRoGBqrXYonaFyGiFMuc9VZrXf7DarreEwMpurG3dd+CNyW5w=="; + url = "https://registry.npmjs.org/object.assign/-/object.assign-4.1.1.tgz"; + sha512 = "VT/cxmx5yaoHSOTSyrCygIDFco+RsibY2NM0a4RdEeY/4KgqezwFtK1yr3U67xYhqJSlASm2pKhLVzPj2lr4bA=="; }; }; "object.pick-1.3.0" = { @@ -5143,6 +5422,15 @@ let sha1 = "87a10ac4c1694bd2e1cbf53591a66141fb5dd747"; }; }; + "on-finished-2.3.0" = { + name = "on-finished"; + packageName = "on-finished"; + version = "2.3.0"; + src = fetchurl { + url = "https://registry.npmjs.org/on-finished/-/on-finished-2.3.0.tgz"; + sha1 = "20f1336481b083cd75337992a16971aa2d906947"; + }; + }; "once-1.4.0" = { name = "once"; packageName = "once"; @@ -5269,6 +5557,15 @@ let sha512 = "ugq4DFI0Ptb+WWjAdOK16+u/nHfiIrcE+sh8kZMaM0WllQKLI9rOUq6c2b7cwPkXdzfQESqvoqK6ug7U/Yyzug=="; }; }; + "parseurl-1.3.3" = { + name = "parseurl"; + packageName = "parseurl"; + version = "1.3.3"; + src = fetchurl { + url = "https://registry.npmjs.org/parseurl/-/parseurl-1.3.3.tgz"; + sha512 = "CiyeOxFT/JZyN5m0z9PfXw4SCBJ6Sygz1Dpl0wqjlhDEGGBP1GnsUVEL0p63hoG1fcj3fHynXi9NYO4nWOL+qQ=="; + }; + }; "pascalcase-0.1.1" = { name = "pascalcase"; packageName = "pascalcase"; @@ -5332,6 +5629,15 @@ let sha512 = "GSmOT2EbHrINBf9SR7CDELwlJ8AENk3Qn7OikK4nFYAu3Ote2+JYNVvkpAEQm3/TLNEJFD/xZJjzyxg3KBWOzw=="; }; }; + "path-type-4.0.0" = { + name = "path-type"; + packageName = "path-type"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/path-type/-/path-type-4.0.0.tgz"; + sha512 = "gDKb8aZMDeD/tZWs9P6+q0J9Mwkdl6xMV8TjnGP3qJVJ06bdMgkbBlLU8IdfOsIsFz2BW1rNVT3XuNEl8zPAvw=="; + }; + }; "performance-now-2.1.0" = { name = "performance-now"; packageName = "performance-now"; @@ -5512,6 +5818,15 @@ let sha512 = "N5ZAX4/LxJmF+7wN74pUD6qAh9/wnvdQcjq9TZjevvXzSUo7bfmw91saqMjzGS2xq91/odN2dW/WOl7qQHNDGA=="; }; }; + "range-parser-1.2.1" = { + name = "range-parser"; + packageName = "range-parser"; + version = "1.2.1"; + src = fetchurl { + url = "https://registry.npmjs.org/range-parser/-/range-parser-1.2.1.tgz"; + sha512 = "Hrgsx+orqoygnmhFbKaHE6c296J+HTAQXoxEF6gNupROmmGJRoyzfG3ccAveqCBrwr/2yxQ5BVd/GTl5agOwSg=="; + }; + }; "rc-1.2.8" = { name = "rc"; packageName = "rc"; @@ -5638,13 +5953,13 @@ let sha512 = "ZOIzd8yVsQQA7j8GCSlPGXwg5PfmA1mrq0JP4nGhh54LaKN3xdai/vHUDu74pKwV8OxseMS65u2NImosQcSD0Q=="; }; }; - "regexpu-core-4.7.0" = { + "regexpu-core-4.7.1" = { name = "regexpu-core"; packageName = "regexpu-core"; - version = "4.7.0"; + version = "4.7.1"; src = fetchurl { - url = "https://registry.npmjs.org/regexpu-core/-/regexpu-core-4.7.0.tgz"; - sha512 = "TQ4KXRnIn6tz6tjnrXEkD/sshygKH/j5KzK86X8MkeHyZ8qst/LZ89j3X4/8HEIfHANTFIP/AbXakeRhWIl5YQ=="; + url = "https://registry.npmjs.org/regexpu-core/-/regexpu-core-4.7.1.tgz"; + sha512 = "ywH2VUraA44DZQuRKzARmw6S66mr48pQVva4LBeRhcOltJ6hExvWly5ZjFLYo67xbIxb6W1q4bAGtgfEl20zfQ=="; }; }; "regjsgen-0.5.2" = { @@ -5746,6 +6061,15 @@ let sha512 = "NKN5kMDylKuldxYLSUfrbo5Tuzh4hd+2E8NPPX02mZtn1VuREQToYe/ZdlJy+J3uCpfaiGF05e7B8W0iXbQHmg=="; }; }; + "requires-port-1.0.0" = { + name = "requires-port"; + packageName = "requires-port"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/requires-port/-/requires-port-1.0.0.tgz"; + sha1 = "925d2601d39ac485e091cf0da5c6e694dc3dcaff"; + }; + }; "resolve-1.17.0" = { name = "resolve"; packageName = "resolve"; @@ -5800,6 +6124,15 @@ let sha512 = "TTlYpa+OL+vMMNG24xSlQGEJ3B/RzEfUlLct7b5G/ytav+wPrplCpVMFuwzXbkecJrb6IYo1iFb0S9v37754mg=="; }; }; + "reusify-1.0.4" = { + name = "reusify"; + packageName = "reusify"; + version = "1.0.4"; + src = fetchurl { + url = "https://registry.npmjs.org/reusify/-/reusify-1.0.4.tgz"; + sha512 = "U9nH88a3fc/ekCF1l0/UP1IosiuIjyTh7hBvXVMHYgVcfGvt897Xguj2UOLDeI5BG2m7/uwyaLVT6fbtCwTyzw=="; + }; + }; "rimraf-2.6.3" = { name = "rimraf"; packageName = "rimraf"; @@ -5827,6 +6160,15 @@ let sha512 = "nfMOlASu9OnRJo1mbEk2cz0D56a1MBNrJ7orjRZQG10XDyuvwksKbuXNp6qa+kbn839HwjwhBzhFmdsaEAfauA=="; }; }; + "run-parallel-1.1.9" = { + name = "run-parallel"; + packageName = "run-parallel"; + version = "1.1.9"; + src = fetchurl { + url = "https://registry.npmjs.org/run-parallel/-/run-parallel-1.1.9.tgz"; + sha512 = "DEqnSRTDw/Tc3FXf49zedI638Z9onwUotBMiUFKmrO2sdFKIbXamXGQ3Axd4qgphxKB4kw/qP1w5kTxnfU1B9Q=="; + }; + }; "safe-buffer-5.1.2" = { name = "safe-buffer"; packageName = "safe-buffer"; @@ -5917,6 +6259,15 @@ let sha512 = "OrOb32TeeambH6UrhtShmF7CRDqhL6/5XpPNp2DuRH6+9QLw/orhp72j87v8Qa1ScDkvrrBNpZcDejAirJmfXQ=="; }; }; + "send-0.17.1" = { + name = "send"; + packageName = "send"; + version = "0.17.1"; + src = fetchurl { + url = "https://registry.npmjs.org/send/-/send-0.17.1.tgz"; + sha512 = "BsVKsiGcQMFwT8UxypobUKyv7irCNRHk1T0G680vk88yf6LBByGcZJOTJCrTP2xVN6yI+XjPJcNuE3V4fT9sAg=="; + }; + }; "serialport-9.0.1" = { name = "serialport"; packageName = "serialport"; @@ -5926,6 +6277,15 @@ let sha512 = "35Ms8dqjtAb73lptfEZG2l/nFZOxHt3hUjCHvl+g3Mu737gzFLDpSBrRywBJw4G4eS5ozZ3YcthwYnop1WO+ng=="; }; }; + "serve-static-1.14.1" = { + name = "serve-static"; + packageName = "serve-static"; + version = "1.14.1"; + src = fetchurl { + url = "https://registry.npmjs.org/serve-static/-/serve-static-1.14.1.tgz"; + sha512 = "JMrvUwE54emCYWlTI+hGrGv5I8dEwmco/00EvkzIIsR7MqrHonbD9pO2MOfFnpFntl7ecpZs+3mW+XbQZu9QCg=="; + }; + }; "set-blocking-2.0.0" = { name = "set-blocking"; packageName = "set-blocking"; @@ -5944,6 +6304,15 @@ let sha512 = "JxHc1weCN68wRY0fhCoXpyK55m/XPHafOmK4UWD7m2CI14GMcFypt4w/0+NV5f/ZMby2F6S2wwA7fgynh9gWSw=="; }; }; + "setprototypeof-1.1.1" = { + name = "setprototypeof"; + packageName = "setprototypeof"; + version = "1.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/setprototypeof/-/setprototypeof-1.1.1.tgz"; + sha512 = "JvdAWfbXeIGaZ9cILp38HntZSFSo3mWg6xGcJJsd+d4aRMOqauag1C63dJfDw7OaMYwEbHMOxEZ1lqVRYP2OAw=="; + }; + }; "shebang-command-1.2.0" = { name = "shebang-command"; packageName = "shebang-command"; @@ -6187,13 +6556,13 @@ let sha512 = "cbqHunsQWnJNE6KhVSMsMeH5H/L9EpymbzqTQ3uLwNCLZ1Q481oWaofqH7nO6V07xlXwY6PhQdQ2IedWx/ZK4Q=="; }; }; - "spdx-license-ids-3.0.5" = { + "spdx-license-ids-3.0.6" = { name = "spdx-license-ids"; packageName = "spdx-license-ids"; - version = "3.0.5"; + version = "3.0.6"; src = fetchurl { - url = "https://registry.npmjs.org/spdx-license-ids/-/spdx-license-ids-3.0.5.tgz"; - sha512 = "J+FWzZoynJEXGphVIS+XEh3kFSjZX/1i9gFBaWQcB+/tmpe2qUsSBABpcxqxnAxFdiUFEgAX1bjYGQvIZmoz9Q=="; + url = "https://registry.npmjs.org/spdx-license-ids/-/spdx-license-ids-3.0.6.tgz"; + sha512 = "+orQK83kyMva3WyPf59k1+Y525csj5JejicWut55zeTWANuN17qSiSLUXWtzHeNWORSvT7GLDJ/E/XiIWoXBTw=="; }; }; "split-string-3.1.0" = { @@ -6259,6 +6628,15 @@ let sha1 = "60809c39cbff55337226fd5e0b520f341f1fb5c6"; }; }; + "statuses-1.5.0" = { + name = "statuses"; + packageName = "statuses"; + version = "1.5.0"; + src = fetchurl { + url = "https://registry.npmjs.org/statuses/-/statuses-1.5.0.tgz"; + sha1 = "161c7dac177659fd9811f43771fa99381478628c"; + }; + }; "stealthy-require-1.1.1" = { name = "stealthy-require"; packageName = "stealthy-require"; @@ -6313,6 +6691,24 @@ let sha512 = "zUz5JD+tgqtuDjMhwIg5uFVV3dtqZ9yQJlZVfq4I01/K5Paj5UHj7VyrQOJvzawSVlKpObApbfD0Ed6yJc+1eg=="; }; }; + "string.prototype.trimend-1.0.1" = { + name = "string.prototype.trimend"; + packageName = "string.prototype.trimend"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/string.prototype.trimend/-/string.prototype.trimend-1.0.1.tgz"; + sha512 = "LRPxFUaTtpqYsTeNKaFOw3R4bxIzWOnbQ837QfBylo8jIxtcbK/A/sMV7Q+OAV/vWo+7s25pOE10KYSjaSO06g=="; + }; + }; + "string.prototype.trimstart-1.0.1" = { + name = "string.prototype.trimstart"; + packageName = "string.prototype.trimstart"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/string.prototype.trimstart/-/string.prototype.trimstart-1.0.1.tgz"; + sha512 = "XxZn+QpvrBI1FOcg6dIpxUPgWCPuNXvMD72aaRaUQv1eD4e/Qy8i/hFTe0BUmD60p/QA6bh1avmuPTfNjqVWRw=="; + }; + }; "string_decoder-1.1.1" = { name = "string_decoder"; packageName = "string_decoder"; @@ -6457,13 +6853,13 @@ let sha512 = "9uW5iDvrIMCVpvasdFHW0wJPez0K4JnMZtsuIeDI7HyMGJNxmDZDOCQROr7lXyS+iL/QMpj07qcjGYTSdRFXUg=="; }; }; - "tar-stream-2.1.3" = { + "tar-stream-2.1.4" = { name = "tar-stream"; packageName = "tar-stream"; - version = "2.1.3"; + version = "2.1.4"; src = fetchurl { - url = "https://registry.npmjs.org/tar-stream/-/tar-stream-2.1.3.tgz"; - sha512 = "Z9yri56Dih8IaK8gncVPx4Wqt86NDmQTSh49XLZgjWpGZL9GK9HKParS2scqHCC4w6X9Gh2jwaU45V47XTKwVA=="; + url = "https://registry.npmjs.org/tar-stream/-/tar-stream-2.1.4.tgz"; + sha512 = "o3pS2zlG4gxr67GmFYBLlq+dM8gyRGUOvsrHclSkvtVtQbjV0s/+ZE8OpICbaj8clrX3tjeHngYGP7rweaBnuw=="; }; }; "terminal-link-2.1.1" = { @@ -6592,6 +6988,15 @@ let sha512 = "65P7iz6X5yEr1cwcgvQxbbIw7Uk3gOy5dIdtZ4rDveLqhrdJP+Li/Hx6tyK0NEb+2GCyneCMJiGqrADCSNk8sQ=="; }; }; + "toidentifier-1.0.0" = { + name = "toidentifier"; + packageName = "toidentifier"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/toidentifier/-/toidentifier-1.0.0.tgz"; + sha512 = "yaOH/Pk/VEhBWWTlhI+qXxDFXlejDGcQipMlyxda9nthulaxLZUNcUqFxokp0vcYnvteJln5FNQDRrxj3YcbVw=="; + }; + }; "tough-cookie-2.5.0" = { name = "tough-cookie"; packageName = "tough-cookie"; @@ -6754,40 +7159,40 @@ let sha512 = "zdu8XMNEDepKKR+XYOXAVPtWui0ly0NtohUscw+UmaHiAWT8hrV1rr//H6V+0DvJ3OQ19S979M0laLfX8rm82Q=="; }; }; - "typedoc-0.19.0" = { + "typedoc-0.19.2" = { name = "typedoc"; packageName = "typedoc"; - version = "0.19.0"; + version = "0.19.2"; src = fetchurl { - url = "https://registry.npmjs.org/typedoc/-/typedoc-0.19.0.tgz"; - sha512 = "Rn68JwgDDYyIWl3HXeSsLZcsvxd2anISjhKu64PvID7RETeS2Iwnc4cH60yqc8/N50Xo1d3MHPGYinCPhMMliQ=="; + url = "https://registry.npmjs.org/typedoc/-/typedoc-0.19.2.tgz"; + sha512 = "oDEg1BLEzi1qvgdQXc658EYgJ5qJLVSeZ0hQ57Eq4JXy6Vj2VX4RVo18qYxRWz75ifAaYuYNBUCnbhjd37TfOg=="; }; }; - "typedoc-default-themes-0.11.1" = { + "typedoc-default-themes-0.11.4" = { name = "typedoc-default-themes"; packageName = "typedoc-default-themes"; - version = "0.11.1"; + version = "0.11.4"; src = fetchurl { - url = "https://registry.npmjs.org/typedoc-default-themes/-/typedoc-default-themes-0.11.1.tgz"; - sha512 = "1yl8pbhjrLywqGJx9TfT+wzP+ntudPYjgJdpCj+s5ed2etBkqZPOCBMKwpaN9o6pdoFQF195PggqWTLVEkaRQQ=="; + url = "https://registry.npmjs.org/typedoc-default-themes/-/typedoc-default-themes-0.11.4.tgz"; + sha512 = "Y4Lf+qIb9NTydrexlazAM46SSLrmrQRqWiD52593g53SsmUFioAsMWt8m834J6qsp+7wHRjxCXSZeiiW5cMUdw=="; }; }; - "typedoc-plugin-markdown-2.4.2" = { + "typedoc-plugin-markdown-3.0.3" = { name = "typedoc-plugin-markdown"; packageName = "typedoc-plugin-markdown"; - version = "2.4.2"; + version = "3.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/typedoc-plugin-markdown/-/typedoc-plugin-markdown-2.4.2.tgz"; - sha512 = "BBH+9/Uq5XbsqfzCDl8Jq4iaLXRMXRuAHZRFarAZX7df8+F3vUjDx/WHWoWqbZ/XUFzduLC2Iuy2qwsJX8SQ7A=="; + url = "https://registry.npmjs.org/typedoc-plugin-markdown/-/typedoc-plugin-markdown-3.0.3.tgz"; + sha512 = "cVa9BUkJw5IeadihNDlTy4e5yq1T0ZpNXzc+/vkgxdVJwgt1BQVQHSZYUNDa2R8nrlYmP9yt3ZQDxG9nIg4++A=="; }; }; - "typedoc-plugin-no-inherit-1.1.10" = { + "typedoc-plugin-no-inherit-1.2.0" = { name = "typedoc-plugin-no-inherit"; packageName = "typedoc-plugin-no-inherit"; - version = "1.1.10"; + version = "1.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/typedoc-plugin-no-inherit/-/typedoc-plugin-no-inherit-1.1.10.tgz"; - sha512 = "BhSFAWlBTh9Bf6PSfruIqdQBM8gd/Gj8hVuRk5pVWkHu4I/SB24LzFr5gAo52ZlaQSeN72+VOkkRD6tNYl8Enw=="; + url = "https://registry.npmjs.org/typedoc-plugin-no-inherit/-/typedoc-plugin-no-inherit-1.2.0.tgz"; + sha512 = "jAAslwDbm5sVpA6EQIg5twYctRi/bnT9TgZ5SwbrNpCD5xCIIylPRX9KxIoi1RJliVgCIAxWbSUzzLKGwJCkeA=="; }; }; "typedoc-plugin-sourcefile-url-1.0.6" = { @@ -6799,22 +7204,22 @@ let sha512 = "xHq9DzkoQywS7FyPneMm2/Hr9GRoCpjSQXkVN0W6SCJKP7fguqg2tasgh+8l5/mW6YSYvqCqEbkSYLbuD4Y6gA=="; }; }; - "typescript-4.0.2" = { + "typescript-4.0.3" = { name = "typescript"; packageName = "typescript"; - version = "4.0.2"; + version = "4.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/typescript/-/typescript-4.0.2.tgz"; - sha512 = "e4ERvRV2wb+rRZ/IQeb3jm2VxBsirQLpQhdxplZ2MEzGvDkkMmPglecnNDfSUBivMjP93vRbngYYDQqQ/78bcQ=="; + url = "https://registry.npmjs.org/typescript/-/typescript-4.0.3.tgz"; + sha512 = "tEu6DGxGgRJPb/mVPIZ48e69xCn2yRmCgYmDugAVwmJ6o+0u1RI18eO7E7WBTLYLaEVVOhwQmcdhQHweux/WPg=="; }; }; - "uglify-js-3.10.2" = { + "uglify-js-3.10.4" = { name = "uglify-js"; packageName = "uglify-js"; - version = "3.10.2"; + version = "3.10.4"; src = fetchurl { - url = "https://registry.npmjs.org/uglify-js/-/uglify-js-3.10.2.tgz"; - sha512 = "GXCYNwqoo0MbLARghYjxVBxDCnU0tLqN7IPLdHHbibCb1NI5zBkU2EPcy/GaVxc0BtTjqyGXJCINe6JMR2Dpow=="; + url = "https://registry.npmjs.org/uglify-js/-/uglify-js-3.10.4.tgz"; + sha512 = "kBFT3U4Dcj4/pJ52vfjCSfyLyvG9VYYuGYPmrPvAxRw/i7xHiT4VvCev+uiEMcEEiu6UNB6KgWmGtSUYIWScbw=="; }; }; "unc-path-regex-0.1.2" = { @@ -6898,6 +7303,15 @@ let sha512 = "Bay5CkSLcdypcBCsxvHEvaG3mftzT5FlUnRToPWEAVxwYI8NI/8zSJ/Gknlp86MPhV6hBA8I8TBsETj2tssoHQ=="; }; }; + "unpipe-1.0.0" = { + name = "unpipe"; + packageName = "unpipe"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/unpipe/-/unpipe-1.0.0.tgz"; + sha1 = "b2bf4ee8514aae6165b4817829d21b2ef49904ec"; + }; + }; "unset-value-1.0.0" = { name = "unset-value"; packageName = "unset-value"; @@ -6916,13 +7330,13 @@ let sha512 = "aZwGpamFO61g3OlfT7OQCHqhGnW43ieH9WZeP7QxN/G/jS4jfqUkZxoryvJgVPEcrl5NL/ggHsSmLMHuH64Lhg=="; }; }; - "uri-js-4.2.2" = { + "uri-js-4.4.0" = { name = "uri-js"; packageName = "uri-js"; - version = "4.2.2"; + version = "4.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/uri-js/-/uri-js-4.2.2.tgz"; - sha512 = "KY9Frmirql91X2Qgjry0Wd4Y+YTdrdZheS8TFwvkbLWf/G5KNJDCh6pKL5OZctEW4+0Baa5idK2ZQuELRwPznQ=="; + url = "https://registry.npmjs.org/uri-js/-/uri-js-4.4.0.tgz"; + sha512 = "B0yRTzYdUCCn9n+F4+Gh4yIDtMQcaJsmYBDsTSG8g/OejKBodLQ2IHfN3bM7jUsRXndopT7OIXWdYqc1fjmV6g=="; }; }; "urix-0.1.0" = { @@ -7069,13 +7483,13 @@ let sha512 = "M4yMwr6mAnQz76TbJm914+gPpB/nCwvZbJU28cUD6dR004SAxDLOOSUaB1JDRqLtaOV/vi0IC5lEAGFgrjGv/g=="; }; }; - "whatwg-url-8.2.1" = { + "whatwg-url-8.2.2" = { name = "whatwg-url"; packageName = "whatwg-url"; - version = "8.2.1"; + version = "8.2.2"; src = fetchurl { - url = "https://registry.npmjs.org/whatwg-url/-/whatwg-url-8.2.1.tgz"; - sha512 = "ZmVCr6nfBeaMxEHALLEGy0LszYjpJqf6PVNQUQ1qd9Et+q7Jpygd4rGGDXgHjD8e99yLFseD69msHDM4YwPZ4A=="; + url = "https://registry.npmjs.org/whatwg-url/-/whatwg-url-8.2.2.tgz"; + sha512 = "PcVnO6NiewhkmzV0qn7A+UZ9Xx4maNTI+O+TShmfE4pqjoCMwUMjkvoNhNHPTvgR7QH9Xt3R13iHuWy2sToFxQ=="; }; }; "which-1.3.1" = { @@ -7267,33 +7681,42 @@ let sha512 = "o50j0JeToy/4K6OZcaQmW6lyXXKhq7csREXcDwk2omFPJEwUNOVtJKvmDr9EI1fAJZUyZcRF7kxGBWmRXudrCQ=="; }; }; - "zigbee-herdsman-0.12.127" = { + "zigbee-herdsman-0.13.11" = { name = "zigbee-herdsman"; packageName = "zigbee-herdsman"; - version = "0.12.127"; + version = "0.13.11"; src = fetchurl { - url = "https://registry.npmjs.org/zigbee-herdsman/-/zigbee-herdsman-0.12.127.tgz"; - sha512 = "NbNwX+83byss1tQpZXydpo9iYuHa3RV88X2vHpmoNnv4WuHBjnSbmL/1sdiUB1URBIGeFgC9MxLiTtqxMyCehQ=="; + url = "https://registry.npmjs.org/zigbee-herdsman/-/zigbee-herdsman-0.13.11.tgz"; + sha512 = "VgsTcYE9lHyXCaHYgzo0Jbtx69YV34YshfqRrcmst59pMmcGN3Vco3TG9FW7SVIJrsZKtVNKTLaUsxzM/9VcIg=="; }; }; - "zigbee-herdsman-converters-12.0.178" = { + "zigbee-herdsman-converters-12.0.194" = { name = "zigbee-herdsman-converters"; packageName = "zigbee-herdsman-converters"; - version = "12.0.178"; + version = "12.0.194"; src = fetchurl { - url = "https://registry.npmjs.org/zigbee-herdsman-converters/-/zigbee-herdsman-converters-12.0.178.tgz"; - sha512 = "SOATRwJU8NCWay194BCzDr0+HkgF4ANv8Qw8Xmqbz60YZWsNh9y8tYrVbIbcTdiZKLGzambrmY66DgOntiTxNA=="; + url = "https://registry.npmjs.org/zigbee-herdsman-converters/-/zigbee-herdsman-converters-12.0.194.tgz"; + sha512 = "0g4hZHKGKIgVNxYZ967tbmijMX/GAKt67dUXizFuMlt3bLTJbzDSfSG4b3XMRfvnDVbFU8gyEs841l7UbO1NzA=="; + }; + }; + "zigbee2mqtt-frontend-0.2.17" = { + name = "zigbee2mqtt-frontend"; + packageName = "zigbee2mqtt-frontend"; + version = "0.2.17"; + src = fetchurl { + url = "https://registry.npmjs.org/zigbee2mqtt-frontend/-/zigbee2mqtt-frontend-0.2.17.tgz"; + sha512 = "t5Alx8m2aLq5lVWKzY3qc7+YwSE1noRyVTjVBTKL/DgbdwCsKZ/D1J1ZdKyAMAPM2GUsqgBGQU+XmDXZ5TDf8A=="; }; }; }; args = { name = "zigbee2mqtt"; packageName = "zigbee2mqtt"; - version = "1.14.4"; + version = "1.15.0"; src = ./.; dependencies = [ sources."@dabh/diagnostics-2.0.2" - sources."ajv-6.12.4" + sources."ajv-6.12.5" sources."argparse-1.0.10" sources."async-3.2.0" sources."balanced-match-1.0.0" @@ -7320,9 +7743,13 @@ let sources."core-util-is-1.0.2" sources."d-1.0.1" sources."debounce-1.2.0" - sources."debug-4.1.1" + sources."debug-2.6.9" + sources."depd-1.1.2" + sources."destroy-1.0.4" sources."duplexify-3.7.1" + sources."ee-first-1.1.1" sources."enabled-2.0.0" + sources."encodeurl-1.0.2" sources."end-of-stream-1.4.4" sources."es5-ext-0.10.53" sources."es6-iterator-2.0.3" @@ -7333,8 +7760,11 @@ let ]; }) sources."es6-symbol-3.1.3" + sources."escape-html-1.0.3" sources."esprima-4.0.1" + sources."etag-1.8.1" sources."event-emitter-0.3.5" + sources."eventemitter3-4.0.7" (sources."ext-1.4.0" // { dependencies = [ sources."type-2.1.0" @@ -7346,7 +7776,10 @@ let sources."fast-safe-stringify-2.0.7" sources."fecha-4.2.0" sources."file-uri-to-path-1.0.0" + sources."finalhandler-1.1.2" sources."fn.name-1.1.0" + sources."follow-redirects-1.13.0" + sources."fresh-0.5.2" sources."fs.realpath-1.0.0" sources."git-last-commit-1.0.0" sources."glob-7.1.6" @@ -7354,6 +7787,8 @@ let sources."glob-stream-6.1.0" sources."glossy-0.1.7" sources."help-me-1.1.0" + sources."http-errors-1.7.3" + sources."http-proxy-1.18.1" sources."humanize-duration-3.23.1" sources."ieee754-1.1.13" sources."inflight-1.0.6" @@ -7370,29 +7805,40 @@ let sources."isarray-1.0.0" sources."js-yaml-3.14.0" sources."json-schema-traverse-0.4.1" - sources."json-stable-stringify-1.0.1" sources."json-stable-stringify-without-jsonify-1.0.1" - sources."jsonify-0.0.0" sources."kuler-2.0.0" sources."leven-2.1.0" - sources."logform-2.2.0" + (sources."logform-2.2.0" // { + dependencies = [ + sources."ms-2.1.2" + ]; + }) + sources."mime-1.6.0" sources."minimatch-3.0.4" sources."minimist-1.2.5" sources."mkdir-recursive-0.4.0" - sources."moment-2.27.0" - sources."mqtt-4.2.1" - (sources."mqtt-packet-6.4.0" // { + sources."moment-2.29.0" + (sources."mqtt-4.2.1" // { dependencies = [ - sources."safe-buffer-5.2.1" + sources."debug-4.2.0" + sources."ms-2.1.2" ]; }) - sources."ms-2.1.2" + (sources."mqtt-packet-6.6.0" // { + dependencies = [ + sources."debug-4.2.0" + sources."ms-2.1.2" + ]; + }) + sources."ms-2.0.0" sources."nan-2.14.1" sources."next-tick-1.0.0" sources."object-assign-deep-0.4.0" + sources."on-finished-2.3.0" sources."once-1.4.0" sources."one-time-1.0.0" sources."ordered-read-streams-1.0.1" + sources."parseurl-1.3.3" sources."path-dirname-1.0.2" sources."path-is-absolute-1.0.1" sources."process-nextick-args-2.0.1" @@ -7403,12 +7849,21 @@ let ]; }) sources."punycode-2.1.1" + sources."range-parser-1.2.1" sources."readable-stream-2.3.7" sources."reinterval-1.1.0" sources."remove-trailing-separator-1.1.0" + sources."requires-port-1.0.0" sources."rimraf-3.0.2" sources."safe-buffer-5.1.2" sources."semver-7.3.2" + (sources."send-0.17.1" // { + dependencies = [ + sources."ms-2.1.1" + ]; + }) + sources."serve-static-1.14.1" + sources."setprototypeof-1.1.1" sources."simple-swizzle-0.2.2" (sources."split2-3.2.2" // { dependencies = [ @@ -7417,19 +7872,22 @@ let }) sources."sprintf-js-1.0.3" sources."stack-trace-0.0.10" + sources."statuses-1.5.0" sources."stream-shift-1.0.1" sources."string_decoder-1.1.1" sources."text-hex-1.0.0" sources."through2-2.0.5" sources."through2-filter-3.0.0" sources."to-absolute-glob-2.0.2" + sources."toidentifier-1.0.0" sources."triple-beam-1.3.0" sources."type-1.2.0" sources."typedarray-0.0.6" sources."unc-path-regex-0.1.2" sources."unique-stream-2.3.1" sources."unix-dgram-2.0.3" - sources."uri-js-4.2.2" + sources."unpipe-1.0.0" + sources."uri-js-4.4.0" sources."util-deprecate-1.0.2" (sources."winston-3.3.3" // { dependencies = [ @@ -7441,13 +7899,13 @@ let sources."wrappy-1.0.2" sources."ws-7.3.1" sources."xtend-4.0.2" - (sources."zigbee-herdsman-0.12.127" // { + (sources."zigbee-herdsman-0.13.11" // { dependencies = [ - sources."@babel/cli-7.10.5" + sources."@babel/cli-7.11.6" sources."@babel/code-frame-7.10.4" sources."@babel/compat-data-7.11.0" - sources."@babel/core-7.11.4" - sources."@babel/generator-7.11.4" + sources."@babel/core-7.11.6" + sources."@babel/generator-7.11.6" sources."@babel/helper-annotate-as-pure-7.10.4" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.10.4" sources."@babel/helper-compilation-targets-7.10.4" @@ -7473,7 +7931,7 @@ let sources."@babel/helper-wrap-function-7.10.4" sources."@babel/helpers-7.10.4" sources."@babel/highlight-7.10.4" - sources."@babel/parser-7.11.4" + sources."@babel/parser-7.11.5" sources."@babel/plugin-proposal-async-generator-functions-7.10.5" sources."@babel/plugin-proposal-class-properties-7.10.4" sources."@babel/plugin-proposal-dynamic-import-7.10.4" @@ -7535,15 +7993,22 @@ let sources."@babel/plugin-transform-typescript-7.11.0" sources."@babel/plugin-transform-unicode-escapes-7.10.4" sources."@babel/plugin-transform-unicode-regex-7.10.4" - sources."@babel/preset-env-7.11.0" + sources."@babel/preset-env-7.11.5" sources."@babel/preset-modules-0.1.4" sources."@babel/preset-typescript-7.10.4" sources."@babel/runtime-7.11.2" sources."@babel/template-7.10.4" - sources."@babel/traverse-7.11.0" - sources."@babel/types-7.11.0" + sources."@babel/traverse-7.11.5" + sources."@babel/types-7.11.5" sources."@bcoe/v8-coverage-0.2.3" sources."@cnakazawa/watch-1.0.4" + (sources."@eslint/eslintrc-0.1.3" // { + dependencies = [ + sources."globals-12.4.0" + sources."ignore-4.0.6" + sources."strip-json-comments-3.1.1" + ]; + }) sources."@istanbuljs/load-nyc-config-1.1.0" sources."@istanbuljs/schema-0.1.2" (sources."@jest/console-26.3.0" // { @@ -7677,6 +8142,9 @@ let sources."supports-color-7.2.0" ]; }) + sources."@nodelib/fs.scandir-2.1.3" + sources."@nodelib/fs.stat-2.0.3" + sources."@nodelib/fs.walk-1.2.4" sources."@serialport/binding-abstract-9.0.1" sources."@serialport/binding-mock-9.0.1" sources."@serialport/bindings-9.0.1" @@ -7689,47 +8157,47 @@ let sources."@serialport/stream-9.0.1" sources."@sinonjs/commons-1.8.1" sources."@sinonjs/fake-timers-6.0.1" - sources."@types/babel__core-7.1.9" - sources."@types/babel__generator-7.6.1" - sources."@types/babel__template-7.0.2" - sources."@types/babel__traverse-7.0.13" + sources."@types/babel__core-7.1.10" + sources."@types/babel__generator-7.6.2" + sources."@types/babel__template-7.0.3" + sources."@types/babel__traverse-7.0.15" sources."@types/color-name-1.1.1" sources."@types/debug-4.1.5" - sources."@types/eslint-visitor-keys-1.0.0" sources."@types/graceful-fs-4.1.3" sources."@types/istanbul-lib-coverage-2.0.3" sources."@types/istanbul-lib-report-3.0.0" sources."@types/istanbul-reports-1.1.2" - sources."@types/jest-26.0.10" - sources."@types/json-schema-7.0.5" - sources."@types/nedb-1.8.10" - sources."@types/node-14.6.2" + sources."@types/jest-26.0.14" + sources."@types/json-schema-7.0.6" + sources."@types/nedb-1.8.11" + sources."@types/node-14.11.2" sources."@types/normalize-package-data-2.4.0" - sources."@types/prettier-2.1.0" + sources."@types/prettier-2.1.1" sources."@types/serialport-8.0.1" sources."@types/stack-utils-1.0.1" - sources."@types/yargs-15.0.5" + sources."@types/yargs-15.0.7" sources."@types/yargs-parser-15.0.0" - (sources."@typescript-eslint/eslint-plugin-3.10.1" // { + (sources."@typescript-eslint/eslint-plugin-4.2.0" // { dependencies = [ sources."semver-7.3.2" ]; }) - sources."@typescript-eslint/experimental-utils-3.10.1" - sources."@typescript-eslint/parser-3.10.1" - sources."@typescript-eslint/types-3.10.1" - (sources."@typescript-eslint/typescript-estree-3.10.1" // { + sources."@typescript-eslint/experimental-utils-4.2.0" + sources."@typescript-eslint/parser-4.2.0" + sources."@typescript-eslint/scope-manager-4.2.0" + sources."@typescript-eslint/types-4.2.0" + (sources."@typescript-eslint/typescript-estree-4.2.0" // { dependencies = [ sources."semver-7.3.2" ]; }) - sources."@typescript-eslint/visitor-keys-3.10.1" - sources."abab-2.0.4" + sources."@typescript-eslint/visitor-keys-4.2.0" + sources."abab-2.0.5" sources."acorn-7.4.0" sources."acorn-globals-6.0.0" - sources."acorn-jsx-5.2.0" + sources."acorn-jsx-5.3.1" sources."acorn-walk-7.2.0" - sources."ajv-6.12.4" + sources."ajv-6.12.5" sources."ansi-colors-4.1.1" (sources."ansi-escapes-4.3.1" // { dependencies = [ @@ -7749,6 +8217,7 @@ let sources."arr-diff-4.0.0" sources."arr-flatten-1.1.0" sources."arr-union-3.1.0" + sources."array-union-2.1.0" sources."array-unique-0.3.2" sources."asn1-0.2.4" sources."assert-plus-1.0.0" @@ -7805,14 +8274,14 @@ let ]; }) sources."browser-process-hrtime-1.0.0" - sources."browserslist-4.14.0" + sources."browserslist-4.14.5" sources."bser-2.1.1" sources."buffer-5.6.0" sources."buffer-from-1.1.1" sources."cache-base-1.0.1" sources."callsites-3.1.0" sources."camelcase-5.3.1" - sources."caniuse-lite-1.0.30001119" + sources."caniuse-lite-1.0.30001137" sources."capture-exit-2.0.0" sources."caseless-0.12.0" sources."chalk-2.4.2" @@ -7862,7 +8331,7 @@ let }) sources."dashdash-1.14.1" sources."data-urls-2.0.0" - sources."debug-4.1.1" + sources."debug-4.2.0" sources."decamelize-1.2.0" sources."decimal.js-10.2.0" sources."decode-uri-component-0.2.0" @@ -7883,6 +8352,7 @@ let sources."detect-libc-1.0.3" sources."detect-newline-3.1.0" sources."diff-sequences-25.2.6" + sources."dir-glob-3.0.1" sources."doctrine-3.0.0" (sources."domexception-2.0.1" // { dependencies = [ @@ -7890,13 +8360,15 @@ let ]; }) sources."ecc-jsbn-0.1.2" - sources."electron-to-chromium-1.3.555" + sources."electron-to-chromium-1.3.573" sources."emittery-0.7.1" sources."emoji-regex-7.0.3" sources."end-of-stream-1.4.4" sources."enquirer-2.3.6" sources."error-ex-1.3.2" - sources."escalade-3.0.2" + sources."es-abstract-1.18.0-next.0" + sources."es-to-primitive-1.2.1" + sources."escalade-3.1.0" sources."escape-string-regexp-1.0.5" (sources."escodegen-1.14.3" // { dependencies = [ @@ -7907,7 +8379,7 @@ let sources."type-check-0.3.2" ]; }) - (sources."eslint-7.7.0" // { + (sources."eslint-7.10.0" // { dependencies = [ sources."ansi-regex-5.0.0" sources."ansi-styles-4.2.1" @@ -7915,9 +8387,11 @@ let sources."color-convert-2.0.1" sources."color-name-1.1.4" sources."cross-spawn-7.0.3" + sources."eslint-visitor-keys-1.3.0" sources."glob-parent-5.1.1" sources."globals-12.4.0" sources."has-flag-4.0.0" + sources."ignore-4.0.6" sources."path-key-3.1.1" sources."semver-7.3.2" sources."shebang-command-2.0.0" @@ -7928,17 +8402,29 @@ let sources."which-2.0.2" ]; }) - sources."eslint-scope-5.1.0" - sources."eslint-utils-2.1.0" - sources."eslint-visitor-keys-1.3.0" - sources."espree-7.3.0" + sources."eslint-scope-5.1.1" + (sources."eslint-utils-2.1.0" // { + dependencies = [ + sources."eslint-visitor-keys-1.3.0" + ]; + }) + sources."eslint-visitor-keys-2.0.0" + (sources."espree-7.3.0" // { + dependencies = [ + sources."eslint-visitor-keys-1.3.0" + ]; + }) sources."esprima-4.0.1" (sources."esquery-1.3.1" // { dependencies = [ sources."estraverse-5.2.0" ]; }) - sources."esrecurse-4.2.1" + (sources."esrecurse-4.3.0" // { + dependencies = [ + sources."estraverse-5.2.0" + ]; + }) sources."estraverse-4.3.0" sources."esutils-2.0.3" sources."exec-sh-0.3.4" @@ -7983,8 +8469,19 @@ let }) sources."extsprintf-1.3.0" sources."fast-deep-equal-3.1.3" + (sources."fast-glob-3.2.4" // { + dependencies = [ + sources."braces-3.0.2" + sources."fill-range-7.0.1" + sources."glob-parent-5.1.1" + sources."is-number-7.0.0" + sources."micromatch-4.0.2" + sources."to-regex-range-5.0.1" + ]; + }) sources."fast-json-stable-stringify-2.1.0" sources."fast-levenshtein-2.0.6" + sources."fastq-1.8.0" sources."fb-watchman-2.0.1" sources."file-entry-cache-5.0.1" sources."file-uri-to-path-1.0.0" @@ -8022,6 +8519,11 @@ let ]; }) sources."globals-11.12.0" + (sources."globby-11.0.1" // { + dependencies = [ + sources."slash-3.0.0" + ]; + }) sources."graceful-fs-4.2.4" sources."growly-1.3.0" (sources."handlebars-4.7.6" // { @@ -8031,6 +8533,7 @@ let }) sources."har-schema-2.0.0" sources."har-validator-5.1.5" + sources."has-1.0.3" sources."has-flag-3.0.0" sources."has-symbols-1.0.1" sources."has-unicode-2.0.1" @@ -8040,7 +8543,7 @@ let sources."kind-of-4.0.0" ]; }) - sources."highlight.js-10.1.2" + sources."highlight.js-10.2.0" sources."hosted-git-info-2.8.8" sources."html-encoding-sniffer-2.0.1" sources."html-escaper-2.0.2" @@ -8048,7 +8551,7 @@ let sources."human-signals-1.1.1" sources."iconv-lite-0.4.24" sources."ieee754-1.1.13" - sources."ignore-4.0.6" + sources."ignore-5.1.8" (sources."import-fresh-3.2.1" // { dependencies = [ sources."resolve-from-4.0.0" @@ -8070,12 +8573,14 @@ let sources."is-arrayish-0.2.1" sources."is-binary-path-1.0.1" sources."is-buffer-1.1.6" + sources."is-callable-1.2.2" sources."is-ci-2.0.0" (sources."is-data-descriptor-0.1.4" // { dependencies = [ sources."kind-of-3.2.2" ]; }) + sources."is-date-object-1.0.2" (sources."is-descriptor-0.1.6" // { dependencies = [ sources."kind-of-5.1.0" @@ -8087,6 +8592,7 @@ let sources."is-fullwidth-code-point-1.0.0" sources."is-generator-fn-2.1.0" sources."is-glob-4.0.1" + sources."is-negative-zero-2.0.0" (sources."is-number-3.0.0" // { dependencies = [ sources."kind-of-3.2.2" @@ -8094,7 +8600,9 @@ let }) sources."is-plain-object-2.0.4" sources."is-potential-custom-element-name-1.0.0" + sources."is-regex-1.1.1" sources."is-stream-1.1.0" + sources."is-symbol-1.0.3" sources."is-typedarray-1.0.0" sources."is-windows-1.0.2" sources."is-wsl-2.2.0" @@ -8449,7 +8957,7 @@ let sources."jsbn-0.1.1" sources."jsdom-16.4.0" sources."jsesc-2.5.2" - sources."json-parse-even-better-errors-2.3.0" + sources."json-parse-even-better-errors-2.3.1" sources."json-schema-0.2.3" sources."json-schema-traverse-0.4.1" sources."json-stable-stringify-without-jsonify-1.0.1" @@ -8474,6 +8982,7 @@ let sources."map-visit-1.0.0" sources."marked-1.1.1" sources."merge-stream-2.0.0" + sources."merge2-1.4.1" sources."micromatch-3.1.10" sources."mime-db-1.44.0" sources."mime-types-2.1.27" @@ -8500,7 +9009,7 @@ let sources."which-2.0.2" ]; }) - sources."node-releases-1.1.60" + sources."node-releases-1.1.61" sources."noop-logger-0.1.1" sources."normalize-package-data-2.5.0" sources."normalize-path-3.0.0" @@ -8516,9 +9025,10 @@ let sources."kind-of-3.2.2" ]; }) + sources."object-inspect-1.8.0" sources."object-keys-1.1.1" sources."object-visit-1.0.1" - sources."object.assign-4.1.0" + sources."object.assign-4.1.1" sources."object.pick-1.3.0" sources."once-1.4.0" sources."onetime-5.1.2" @@ -8537,6 +9047,7 @@ let sources."path-is-absolute-1.0.1" sources."path-key-2.0.1" sources."path-parse-1.0.6" + sources."path-type-4.0.0" sources."performance-now-2.1.0" sources."picomatch-2.2.2" sources."pify-4.0.1" @@ -8577,7 +9088,7 @@ let sources."regenerator-transform-0.14.5" sources."regex-not-1.0.2" sources."regexpp-3.1.0" - sources."regexpu-core-4.7.0" + sources."regexpu-core-4.7.1" sources."regjsgen-0.5.2" (sources."regjsparser-0.6.4" // { dependencies = [ @@ -8606,8 +9117,10 @@ let sources."resolve-from-5.0.0" sources."resolve-url-0.2.1" sources."ret-0.1.15" + sources."reusify-1.0.4" sources."rimraf-2.6.3" sources."rsvp-4.8.5" + sources."run-parallel-1.1.9" sources."safe-buffer-5.1.2" sources."safe-regex-1.1.0" sources."safer-buffer-2.1.2" @@ -8668,7 +9181,7 @@ let sources."spdx-correct-3.1.1" sources."spdx-exceptions-2.3.0" sources."spdx-expression-parse-3.0.1" - sources."spdx-license-ids-3.0.5" + sources."spdx-license-ids-3.0.6" sources."split-string-3.1.0" sources."sprintf-js-1.0.3" sources."sshpk-1.16.1" @@ -8690,6 +9203,16 @@ let ]; }) sources."string-width-1.0.2" + (sources."string.prototype.trimend-1.0.1" // { + dependencies = [ + sources."es-abstract-1.17.6" + ]; + }) + (sources."string.prototype.trimstart-1.0.1" // { + dependencies = [ + sources."es-abstract-1.17.6" + ]; + }) sources."string_decoder-1.1.1" sources."strip-ansi-3.0.1" sources."strip-bom-4.0.0" @@ -8713,7 +9236,7 @@ let ]; }) sources."tar-fs-2.1.0" - (sources."tar-stream-2.1.3" // { + (sources."tar-stream-2.1.4" // { dependencies = [ sources."readable-stream-3.6.0" ]; @@ -8741,13 +9264,17 @@ let sources."type-detect-4.0.8" sources."type-fest-0.8.1" sources."typedarray-to-buffer-3.1.5" - sources."typedoc-0.19.0" - sources."typedoc-default-themes-0.11.1" - sources."typedoc-plugin-markdown-2.4.2" - sources."typedoc-plugin-no-inherit-1.1.10" + (sources."typedoc-0.19.2" // { + dependencies = [ + sources."semver-7.3.2" + ]; + }) + sources."typedoc-default-themes-0.11.4" + sources."typedoc-plugin-markdown-3.0.3" + sources."typedoc-plugin-no-inherit-1.2.0" sources."typedoc-plugin-sourcefile-url-1.0.6" - sources."typescript-4.0.2" - sources."uglify-js-3.10.2" + sources."typescript-4.0.3" + sources."uglify-js-3.10.4" sources."unicode-canonical-property-names-ecmascript-1.0.4" sources."unicode-match-property-ecmascript-1.0.4" sources."unicode-match-property-value-ecmascript-1.2.0" @@ -8765,7 +9292,7 @@ let ]; }) sources."upath-1.2.0" - sources."uri-js-4.2.2" + sources."uri-js-4.4.0" sources."urix-0.1.0" sources."use-3.1.1" sources."util-deprecate-1.0.2" @@ -8784,7 +9311,7 @@ let sources."webidl-conversions-6.1.0" sources."whatwg-encoding-1.0.5" sources."whatwg-mimetype-2.3.0" - sources."whatwg-url-8.2.1" + sources."whatwg-url-8.2.2" sources."which-1.3.1" sources."which-module-2.0.0" sources."which-pm-runs-1.0.0" @@ -8822,16 +9349,16 @@ let sources."yargs-parser-18.1.3" ]; }) - (sources."zigbee-herdsman-converters-12.0.178" // { + (sources."zigbee-herdsman-converters-12.0.194" // { dependencies = [ sources."@babel/code-frame-7.10.4" - (sources."@babel/core-7.11.4" // { + (sources."@babel/core-7.11.6" // { dependencies = [ sources."semver-5.7.1" sources."source-map-0.5.7" ]; }) - (sources."@babel/generator-7.11.4" // { + (sources."@babel/generator-7.11.6" // { dependencies = [ sources."source-map-0.5.7" ]; @@ -8853,7 +9380,7 @@ let sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.11.4" + sources."@babel/parser-7.11.5" sources."@babel/plugin-syntax-async-generators-7.8.4" sources."@babel/plugin-syntax-bigint-7.8.3" sources."@babel/plugin-syntax-class-properties-7.10.4" @@ -8866,14 +9393,15 @@ let sources."@babel/plugin-syntax-optional-catch-binding-7.8.3" sources."@babel/plugin-syntax-optional-chaining-7.8.3" sources."@babel/template-7.10.4" - (sources."@babel/traverse-7.11.0" // { + (sources."@babel/traverse-7.11.5" // { dependencies = [ sources."globals-11.12.0" ]; }) - sources."@babel/types-7.11.0" + sources."@babel/types-7.11.5" sources."@bcoe/v8-coverage-0.2.3" sources."@cnakazawa/watch-1.0.4" + sources."@eslint/eslintrc-0.1.3" (sources."@istanbuljs/load-nyc-config-1.1.0" // { dependencies = [ sources."resolve-from-5.0.0" @@ -8895,33 +9423,43 @@ let sources."@jest/test-sequencer-26.4.2" sources."@jest/transform-26.3.0" sources."@jest/types-26.3.0" + sources."@nodelib/fs.scandir-2.1.3" + sources."@nodelib/fs.stat-2.0.3" + sources."@nodelib/fs.walk-1.2.4" sources."@sinonjs/commons-1.8.1" sources."@sinonjs/fake-timers-6.0.1" - sources."@types/babel__core-7.1.9" - sources."@types/babel__generator-7.6.1" - sources."@types/babel__template-7.0.2" - sources."@types/babel__traverse-7.0.13" + sources."@types/babel__core-7.1.10" + sources."@types/babel__generator-7.6.2" + sources."@types/babel__template-7.0.3" + sources."@types/babel__traverse-7.0.15" sources."@types/color-name-1.1.1" sources."@types/graceful-fs-4.1.3" sources."@types/istanbul-lib-coverage-2.0.3" sources."@types/istanbul-lib-report-3.0.0" sources."@types/istanbul-reports-3.0.0" - sources."@types/json-schema-7.0.5" - sources."@types/node-14.6.2" + sources."@types/json-schema-7.0.6" + sources."@types/node-14.11.2" sources."@types/normalize-package-data-2.4.0" - sources."@types/prettier-2.1.0" + sources."@types/prettier-2.1.1" sources."@types/stack-utils-1.0.1" - sources."@types/yargs-15.0.5" + sources."@types/yargs-15.0.7" sources."@types/yargs-parser-15.0.0" - sources."@typescript-eslint/experimental-utils-2.34.0" - sources."@typescript-eslint/typescript-estree-2.34.0" - sources."abab-2.0.4" + sources."@typescript-eslint/experimental-utils-4.2.0" + sources."@typescript-eslint/scope-manager-4.2.0" + sources."@typescript-eslint/types-4.2.0" + sources."@typescript-eslint/typescript-estree-4.2.0" + (sources."@typescript-eslint/visitor-keys-4.2.0" // { + dependencies = [ + sources."eslint-visitor-keys-2.0.0" + ]; + }) + sources."abab-2.0.5" sources."acorn-7.4.0" sources."acorn-globals-6.0.0" - sources."acorn-jsx-5.2.0" + sources."acorn-jsx-5.3.1" sources."acorn-walk-7.2.0" sources."agent-base-6.0.1" - sources."ajv-6.12.4" + sources."ajv-6.12.5" sources."ansi-colors-4.1.1" (sources."ansi-escapes-4.3.1" // { dependencies = [ @@ -8935,6 +9473,7 @@ let sources."arr-diff-4.0.0" sources."arr-flatten-1.1.0" sources."arr-union-3.1.0" + sources."array-union-2.1.0" sources."array-unique-0.3.2" sources."asn1-0.2.4" sources."assert-plus-1.0.0" @@ -9020,7 +9559,7 @@ let }) sources."dashdash-1.14.1" sources."data-urls-2.0.0" - sources."debug-4.1.1" + sources."debug-4.2.0" sources."decamelize-1.2.0" sources."decimal.js-10.2.0" sources."decode-uri-component-0.2.0" @@ -9036,6 +9575,7 @@ let sources."delayed-stream-1.0.0" sources."detect-newline-3.1.0" sources."diff-sequences-26.3.0" + sources."dir-glob-3.0.1" sources."doctrine-3.0.0" (sources."domexception-2.0.1" // { dependencies = [ @@ -9057,10 +9597,10 @@ let sources."type-check-0.3.2" ]; }) - sources."eslint-7.7.0" + sources."eslint-7.10.0" sources."eslint-config-google-0.14.0" - sources."eslint-plugin-jest-23.20.0" - sources."eslint-scope-5.1.0" + sources."eslint-plugin-jest-24.0.2" + sources."eslint-scope-5.1.1" sources."eslint-utils-2.1.0" sources."eslint-visitor-keys-1.3.0" sources."espree-7.3.0" @@ -9070,7 +9610,11 @@ let sources."estraverse-5.2.0" ]; }) - sources."esrecurse-4.2.1" + (sources."esrecurse-4.3.0" // { + dependencies = [ + sources."estraverse-5.2.0" + ]; + }) sources."estraverse-4.3.0" sources."esutils-2.0.3" sources."exec-sh-0.3.4" @@ -9117,8 +9661,10 @@ let }) sources."extsprintf-1.3.0" sources."fast-deep-equal-3.1.3" + sources."fast-glob-3.2.4" sources."fast-json-stable-stringify-2.1.0" sources."fast-levenshtein-2.0.6" + sources."fastq-1.8.0" sources."fb-watchman-2.0.1" sources."file-entry-cache-5.0.1" sources."fill-range-7.0.1" @@ -9143,6 +9689,11 @@ let sources."glob-7.1.6" sources."glob-parent-5.1.1" sources."globals-12.4.0" + (sources."globby-11.0.1" // { + dependencies = [ + sources."ignore-5.1.8" + ]; + }) sources."graceful-fs-4.2.4" sources."growly-1.3.0" sources."har-schema-2.0.0" @@ -9275,7 +9826,7 @@ let sources."jsbn-0.1.1" sources."jsdom-16.4.0" sources."jsesc-2.5.2" - sources."json-parse-even-better-errors-2.3.0" + sources."json-parse-even-better-errors-2.3.1" sources."json-schema-0.2.3" sources."json-schema-traverse-0.4.1" sources."json-stable-stringify-without-jsonify-1.0.1" @@ -9299,6 +9850,7 @@ let sources."map-cache-0.2.2" sources."map-visit-1.0.0" sources."merge-stream-2.0.0" + sources."merge2-1.4.1" sources."micromatch-4.0.2" sources."mime-db-1.44.0" sources."mime-types-2.1.27" @@ -9355,6 +9907,7 @@ let sources."path-is-absolute-1.0.1" sources."path-key-3.1.1" sources."path-parse-1.0.6" + sources."path-type-4.0.0" sources."performance-now-2.1.0" sources."picomatch-2.2.2" sources."pirates-4.0.1" @@ -9410,8 +9963,10 @@ let sources."resolve-from-4.0.0" sources."resolve-url-0.2.1" sources."ret-0.1.15" + sources."reusify-1.0.4" sources."rimraf-2.6.3" sources."rsvp-4.8.5" + sources."run-parallel-1.1.9" sources."safe-buffer-5.2.1" sources."safe-regex-1.1.0" sources."safer-buffer-2.1.2" @@ -9482,7 +10037,7 @@ let sources."spdx-correct-3.1.1" sources."spdx-exceptions-2.3.0" sources."spdx-expression-parse-3.0.1" - sources."spdx-license-ids-3.0.5" + sources."spdx-license-ids-3.0.6" sources."split-string-3.1.0" sources."sprintf-js-1.0.3" sources."sshpk-1.16.1" @@ -9519,7 +10074,7 @@ let }) sources."symbol-tree-3.2.4" sources."table-5.4.6" - sources."tar-stream-2.1.3" + sources."tar-stream-2.1.4" sources."terminal-link-2.1.1" sources."test-exclude-6.0.0" sources."text-table-0.2.0" @@ -9554,7 +10109,7 @@ let sources."has-values-0.1.4" ]; }) - sources."uri-js-4.2.2" + sources."uri-js-4.4.0" sources."urix-0.1.0" sources."use-3.1.1" sources."util-deprecate-1.0.2" @@ -9573,7 +10128,7 @@ let sources."webidl-conversions-6.1.0" sources."whatwg-encoding-1.0.5" sources."whatwg-mimetype-2.3.0" - sources."whatwg-url-8.2.1" + sources."whatwg-url-8.2.2" sources."which-2.0.2" sources."which-module-2.0.0" sources."word-wrap-1.2.3" @@ -9604,6 +10159,7 @@ let sources."yargs-parser-18.1.3" ]; }) + sources."zigbee2mqtt-frontend-0.2.17" ]; buildInputs = globalBuildInputs; meta = { diff --git a/pkgs/shells/bash/bash-5.0-patches.nix b/pkgs/shells/bash/bash-5.0-patches.nix index ca7361b8a1f..4315191d193 100644 --- a/pkgs/shells/bash/bash-5.0-patches.nix +++ b/pkgs/shells/bash/bash-5.0-patches.nix @@ -18,4 +18,5 @@ patch: [ (patch "015" "0pm0px758w4i23s55wajcv6lqfiym7zgxvq0pxf6vclkv8nxy5x5") (patch "016" "0vdha332km2iwx8g2ld15jy7d24cbplzgr1531dpzylr9ajxglgz") (patch "017" "0cfw5lz3fcvq9h1fxihxvw940fjk68015jazvl8x8rlazgxbkwsc") +(patch "018" "1lw1vv0aj6x254hgx4klbz8qkvwxif0g6i7dx116cnhhb8vlwcbw") ] diff --git a/pkgs/shells/bash/bash-completion/default.nix b/pkgs/shells/bash/bash-completion/default.nix index 8463b1750d1..eeb175a5e78 100644 --- a/pkgs/shells/bash/bash-completion/default.nix +++ b/pkgs/shells/bash/bash-completion/default.nix @@ -20,7 +20,9 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ autoreconfHook ]; - doCheck = !stdenv.isDarwin; + # tests are super flaky unfortunately, and regularily break. + # let's disable them for now. + doCheck = false; checkInputs = [ # perl is assumed by perldoc completion perl diff --git a/pkgs/shells/bash/update-patch-set.sh b/pkgs/shells/bash/update-patch-set.sh index 003c7a26d20..cb4f372f543 100755 --- a/pkgs/shells/bash/update-patch-set.sh +++ b/pkgs/shells/bash/update-patch-set.sh @@ -1,4 +1,5 @@ -#!/bin/sh +#!/usr/bin/env nix-shell +#!nix-shell --pure -i bash -p wget -p gnupg -p cacert # Update patch set for GNU Bash or Readline. @@ -14,8 +15,6 @@ fi PROJECT="$1" VERSION="$2" VERSION_CONDENSED="$(echo $VERSION | sed -es/\\.//g)" - -GPG="$(if $(type -P gpg2 > /dev/null); then echo gpg2; else echo gpg; fi)" PATCH_LIST="$PROJECT-$VERSION-patches.nix" set -e @@ -25,6 +24,12 @@ end=100 # must be > 99 for correct padding rm -vf "$PATCH_LIST" +wget "https://tiswww.case.edu/php/chet/gpgkey.asc" +echo "4ef5051ce7200241e65d29c11eb57df8 gpgkey.asc" > gpgkey.asc.md5 +md5sum -c gpgkey.asc.md5 +gpg --import ./gpgkey.asc +rm gpgkey.asc{,.md5} + ( echo "# Automatically generated by \`$(basename $0)'; do not edit." ; \ echo "" ; \ echo "patch: [" ) \ @@ -34,7 +39,7 @@ for i in `seq -w $start $end` do wget ftp.gnu.org/gnu/$PROJECT/$PROJECT-$VERSION-patches/$PROJECT$VERSION_CONDENSED-$i || break wget ftp.gnu.org/gnu/$PROJECT/$PROJECT-$VERSION-patches/$PROJECT$VERSION_CONDENSED-$i.sig - "$GPG" --verify $PROJECT$VERSION_CONDENSED-$i.sig + gpg --verify $PROJECT$VERSION_CONDENSED-$i.sig echo "(patch \"$i\" \"$(nix-hash --flat --type sha256 --base32 $PROJECT$VERSION_CONDENSED-$i)\")" \ >> "$PATCH_LIST" diff --git a/pkgs/shells/es/default.nix b/pkgs/shells/es/default.nix index 761846843fe..992fdc93dcb 100644 --- a/pkgs/shells/es/default.nix +++ b/pkgs/shells/es/default.nix @@ -25,7 +25,7 @@ stdenv.mkDerivation { configureFlags = [ "--with-readline" ]; meta = with stdenv.lib; { - description = "Es is an extensible shell"; + description = "An extensible shell with higher order functions"; longDescription = '' Es is an extensible shell. The language was derived diff --git a/pkgs/shells/nushell/default.nix b/pkgs/shells/nushell/default.nix index 628c61db329..d025ed1ddcd 100644 --- a/pkgs/shells/nushell/default.nix +++ b/pkgs/shells/nushell/default.nix @@ -15,16 +15,16 @@ rustPlatform.buildRustPackage rec { pname = "nushell"; - version = "0.20.0"; + version = "0.21.0"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "038c61605b92a97h84hlifwks0q6miv6rn7spr5h6h2nwvaqlyk6"; + sha256 = "19bpxx9pi3cl5y7h5qg4a2pmvwqavm1vciyvsq96kxkc7rq2xwvl"; }; - cargoSha256 = "1vr0pqcv9gm4cwlkd06672jzz9rbm77c6j5r05waypc1lv4ln2cg"; + cargoSha256 = "1ghbzahz8lbk11sjy2kis12w22rjr92aaw451rmc86pk2lsxn0dx"; nativeBuildInputs = [ pkg-config ] ++ lib.optionals (withStableFeatures && stdenv.isLinux) [ python3 ]; @@ -36,11 +36,6 @@ rustPlatform.buildRustPackage rec { cargoBuildFlags = lib.optional withStableFeatures "--features stable"; - # Remove after https://github.com/NixOS/nixpkgs/pull/97000 lands into master - preConfigure = stdenv.lib.optionalString stdenv.isDarwin '' - unset SDKROOT - ''; - checkPhase = '' runHook preCheck echo "Running cargo test" diff --git a/pkgs/shells/zsh/antigen/default.nix b/pkgs/shells/zsh/antigen/default.nix index b4812428adf..5603e5edf59 100644 --- a/pkgs/shells/zsh/antigen/default.nix +++ b/pkgs/shells/zsh/antigen/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { ''; meta = { - description = "The plugin manager for zsh."; + description = "The plugin manager for zsh"; homepage = "http://antigen.sharats.me"; license = stdenv.lib.licenses.mit; }; diff --git a/pkgs/shells/zsh/oh-my-zsh/default.nix b/pkgs/shells/zsh/oh-my-zsh/default.nix index a8b5e442cd5..e7433e2de0b 100644 --- a/pkgs/shells/zsh/oh-my-zsh/default.nix +++ b/pkgs/shells/zsh/oh-my-zsh/default.nix @@ -4,15 +4,15 @@ { stdenv, fetchFromGitHub }: stdenv.mkDerivation rec { - version = "2020-10-13"; + version = "2020-10-29"; pname = "oh-my-zsh"; - rev = "a39bee8d11aca960651403dddbb7dba38b00183e"; + rev = "852a44094a3bb4df39f8f778bc7ada2ddda09727"; src = fetchFromGitHub { inherit rev; owner = "ohmyzsh"; repo = "ohmyzsh"; - sha256 = "0ak03r58sds1q3wrm2fszwc2i1pyl7lqxnaawbfndbn3ynbaw2xd"; + sha256 = "0021rayw5wiwgjfwy7d6g577xidws58vk7y9xxhidnmk9sr4vri7"; }; installPhase = '' diff --git a/pkgs/shells/zsh/zsh-powerlevel10k/default.nix b/pkgs/shells/zsh/zsh-powerlevel10k/default.nix index 5d81ceaba1b..a978ac93a9b 100644 --- a/pkgs/shells/zsh/zsh-powerlevel10k/default.nix +++ b/pkgs/shells/zsh/zsh-powerlevel10k/default.nix @@ -3,21 +3,35 @@ # To make use of this derivation, use # `programs.zsh.promptInit = "source ${pkgs.zsh-powerlevel10k}/share/zsh-powerlevel10k/powerlevel10k.zsh-theme";` +let + # match gitstatus version with given `gitstatus_version`: + # https://github.com/romkatv/powerlevel10k/blob/master/gitstatus/build.info + gitstatus = pkgs.gitAndTools.gitstatus.overrideAttrs (oldAtttrs: rec { + version = "1.2.0"; + + src = fetchFromGitHub { + owner = "romkatv"; + repo = "gitstatus"; + rev = "v${version}"; + sha256 = "0xi5ab0rsj6xs4vqgn2j5rih1nncghr83yn395mk1is1f4bsmp0s"; + }; + }); +in stdenv.mkDerivation rec { pname = "powerlevel10k"; - version = "1.12.0"; + version = "1.13.0"; src = fetchFromGitHub { owner = "romkatv"; repo = "powerlevel10k"; rev = "v${version}"; - sha256 = "08zg4in70h3kray6lazszzy26gvil9w2cr6xmkbgjsv3k6w3k0jg"; + sha256 = "0w5rv7z47nys3x113mdddpb2pf1d9pmz9myh4xjzrcy4hp4qv421"; }; patches = [ (substituteAll { src = ./gitstatusd.patch; - gitstatusdPath = "${pkgs.gitAndTools.gitstatus}/bin/gitstatusd"; + gitstatusdPath = "${gitstatus}/bin/gitstatusd"; }) ]; diff --git a/pkgs/shells/zsh/zsh-prezto/default.nix b/pkgs/shells/zsh/zsh-prezto/default.nix index 9f7a7f18704..dffecf617b1 100644 --- a/pkgs/shells/zsh/zsh-prezto/default.nix +++ b/pkgs/shells/zsh/zsh-prezto/default.nix @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { cp ./* $out/ -R ''; meta = with stdenv.lib; { - description = "Prezto is the configuration framework for Zsh; it enriches the command line interface environment with sane defaults, aliases, functions, auto completion, and prompt themes."; + description = "Prezto is the configuration framework for Zsh; it enriches the command line interface environment with sane defaults, aliases, functions, auto completion, and prompt themes"; homepage = "https://github.com/sorin-ionescu/prezto"; license = licenses.mit; maintainers = with maintainers; [ ]; diff --git a/pkgs/stdenv/darwin/default.nix b/pkgs/stdenv/darwin/default.nix index 9de6ef63bfe..a040e6ab242 100644 --- a/pkgs/stdenv/darwin/default.nix +++ b/pkgs/stdenv/darwin/default.nix @@ -34,7 +34,7 @@ in rec { export NIX_ENFORCE_NO_NATIVE=''${NIX_ENFORCE_NO_NATIVE-1} export NIX_ENFORCE_PURITY=''${NIX_ENFORCE_PURITY-1} export NIX_IGNORE_LD_THROUGH_GCC=1 - export SDKROOT= + unset SDKROOT export MACOSX_DEPLOYMENT_TARGET=${macosVersionMin} @@ -198,12 +198,6 @@ in rec { python3 = super.python3Minimal; ninja = super.ninja.override { buildDocs = false; }; - - darwin = super.darwin // { - cctools = super.darwin.cctools.override { - enableTapiSupport = false; - }; - }; }; in with prevStage; stageFun 1 prevStage { extraPreHook = "export NIX_CFLAGS_COMPILE+=\" -F${bootstrapTools}/Library/Frameworks\""; @@ -305,7 +299,7 @@ in rec { persistent = self: super: with prevStage; { inherit gnumake gzip gnused bzip2 gawk ed xz patch bash python3 - ncurses libffi zlib gmp pcre gnugrep + ncurses libffi zlib gmp pcre gnugrep cmake coreutils findutils diffutils patchutils ninja libxml2; # Hack to make sure we don't link ncurses in bootstrap tools. The proper @@ -330,7 +324,6 @@ in rec { darwin = super.darwin // rec { inherit (darwin) dyld Libsystem libiconv locale; - cctools = super.darwin.cctools.override { enableTapiSupport = false; }; CF = super.darwin.CF.override { inherit libxml2; python3 = prevStage.python3; @@ -419,7 +412,7 @@ in rec { curl.out openssl.out libssh2.out nghttp2.lib libkrb5 cc.expand-response-params libxml2.out ]) ++ (with pkgs.darwin; [ - dyld Libsystem CF cctools ICU libiconv locale + dyld Libsystem CF cctools ICU libiconv locale libtapi ]); overrides = lib.composeExtensions persistent (self: super: { diff --git a/pkgs/stdenv/darwin/make-bootstrap-tools.nix b/pkgs/stdenv/darwin/make-bootstrap-tools.nix index a299879693c..31e12963937 100644 --- a/pkgs/stdenv/darwin/make-bootstrap-tools.nix +++ b/pkgs/stdenv/darwin/make-bootstrap-tools.nix @@ -100,6 +100,8 @@ in rec { cp ${cctools_}/bin/$i $out/bin done + cp -d ${darwin.libtapi}/lib/libtapi* $out/lib + cp -rd ${pkgs.darwin.CF}/Library $out chmod -R u+w $out diff --git a/pkgs/stdenv/generic/default.nix b/pkgs/stdenv/generic/default.nix index b5798978690..eeddb584a3d 100644 --- a/pkgs/stdenv/generic/default.nix +++ b/pkgs/stdenv/generic/default.nix @@ -61,7 +61,10 @@ let ] # FIXME this on Darwin; see # https://github.com/NixOS/nixpkgs/commit/94d164dd7#commitcomment-22030369 - ++ lib.optional hostPlatform.isLinux ../../build-support/setup-hooks/audit-tmpdir.sh + ++ lib.optionals hostPlatform.isLinux [ + ../../build-support/setup-hooks/audit-tmpdir.sh + ../../build-support/setup-hooks/move-systemd-user-units.sh + ] ++ [ ../../build-support/setup-hooks/multiple-outputs.sh ../../build-support/setup-hooks/move-sbin.sh diff --git a/pkgs/tools/X11/ckbcomp/default.nix b/pkgs/tools/X11/ckbcomp/default.nix index 91e067e7be7..7b41791be32 100644 --- a/pkgs/tools/X11/ckbcomp/default.nix +++ b/pkgs/tools/X11/ckbcomp/default.nix @@ -2,14 +2,14 @@ stdenv.mkDerivation rec { pname = "ckbcomp"; - version = "1.196"; + version = "1.197"; src = fetchFromGitLab { domain = "salsa.debian.org"; owner = "installer-team"; repo = "console-setup"; rev = version; - sha256 = "0c79rycgpna8910as6blw3z3sajzzakz4qlvr6js2yr8zq2d0ylg"; + sha256 = "0m2q30f94vd1wb2zqpiyplpgfchjlm8j41xiyxcqdjzdgqbs7l27"; }; buildInputs = [ perl ]; diff --git a/pkgs/tools/X11/nx-libs/default.nix b/pkgs/tools/X11/nx-libs/default.nix index ceb2534e07a..c08a2fd2185 100644 --- a/pkgs/tools/X11/nx-libs/default.nix +++ b/pkgs/tools/X11/nx-libs/default.nix @@ -1,5 +1,7 @@ -{ stdenv, autoconf, automake, fetchFromGitHub, libgcc, libjpeg_turbo, - libpng, libtool, libxml2, pkgconfig, which, xorg }: +{ stdenv, autoconf, automake, fetchFromGitHub, libgcc, libjpeg_turbo +, libpng, libtool, libxml2, pkgconfig, which, xorg +, libtirpc +}: stdenv.mkDerivation rec { pname = "nx-libs"; version = "3.5.99.24"; @@ -15,7 +17,11 @@ stdenv.mkDerivation rec { buildInputs = [ libgcc libjpeg_turbo libpng libxml2 xorg.fontutil xorg.libXcomposite xorg.libXdamage xorg.libXdmcp xorg.libXext xorg.libXfont2 xorg.libXinerama xorg.libXpm xorg.libXrandr xorg.libXtst xorg.pixman - xorg.xkbcomp xorg.xkeyboardconfig ]; + xorg.xkbcomp xorg.xkeyboardconfig libtirpc + ]; + + NIX_CFLAGS_COMPILE = [ "-I${libtirpc.dev}/include/tirpc" ]; + NIX_LDFLAGS = [ "-ltirpc" ]; enableParallelBuilding = true; diff --git a/pkgs/tools/X11/wpgtk/default.nix b/pkgs/tools/X11/wpgtk/default.nix index 2aa05935991..84d1f379e8a 100644 --- a/pkgs/tools/X11/wpgtk/default.nix +++ b/pkgs/tools/X11/wpgtk/default.nix @@ -3,13 +3,13 @@ python3Packages.buildPythonApplication rec { pname = "wpgtk"; - version = "6.1.0"; + version = "6.1.3"; src = fetchFromGitHub { owner = "deviantfero"; repo = "wpgtk"; rev = version; - sha256 = "06z6qbfd9l3acp3wm28rq4vx3m5cxi4lpxgzc2nxvxmiz8rnnmh1"; + sha256 = "1jv28ygsd6ifjb096w3pm50za6wi62y45ycbizwhv7x56lr6zx1v"; }; buildInputs = [ diff --git a/pkgs/tools/X11/x11spice/default.nix b/pkgs/tools/X11/x11spice/default.nix index 23af2ac44ca..33bc9110848 100644 --- a/pkgs/tools/X11/x11spice/default.nix +++ b/pkgs/tools/X11/x11spice/default.nix @@ -24,10 +24,7 @@ stdenv.mkDerivation rec { NIX_LDFLAGS = "-lpthread"; meta = with stdenv.lib; { - description = '' - x11spice will enable a running X11 desktop to be available - via a Spice server - ''; + description = "Enable a running X11 desktop to be available via a Spice server"; homepage = "https://gitlab.freedesktop.org/spice/x11spice"; platforms = platforms.linux; license = licenses.gpl3; diff --git a/pkgs/tools/admin/aws-google-auth/default.nix b/pkgs/tools/admin/aws-google-auth/default.nix index d96eadf0eab..a9a49beda2f 100644 --- a/pkgs/tools/admin/aws-google-auth/default.nix +++ b/pkgs/tools/admin/aws-google-auth/default.nix @@ -4,6 +4,7 @@ , beautifulsoup4 , boto3 , configparser +, filelock , keyring , keyrings-alt , lxml @@ -19,7 +20,7 @@ buildPythonApplication rec { pname = "aws-google-auth"; - version = "0.0.34"; + version = "0.0.36"; # Pypi doesn't ship the tests, so we fetch directly from GitHub # https://github.com/cevoaustralia/aws-google-auth/issues/120 @@ -27,13 +28,14 @@ buildPythonApplication rec { owner = "cevoaustralia"; repo = "aws-google-auth"; rev = version; - sha256 = "12c5ssdy870szrizhs4d7dzcpq3hvszjvl8ba60qf1ak5jsr1ay4"; + sha256 = "099r020v33sij2b3816cjp4fpy35c886l559szfxqx6kgy19y9z7"; }; - propagatedBuildInputs = [ + propagatedBuildInputs = [ beautifulsoup4 boto3 configparser + filelock keyring keyrings-alt lxml @@ -43,10 +45,10 @@ buildPythonApplication rec { tabulate tzlocal ] ++ lib.optional withU2F python-u2flib-host; - - checkInputs = [ + + checkInputs = [ mock - nose + nose ]; preCheck = '' diff --git a/pkgs/tools/admin/awscli/default.nix b/pkgs/tools/admin/awscli/default.nix index 6bc32962891..79d6f42628f 100644 --- a/pkgs/tools/admin/awscli/default.nix +++ b/pkgs/tools/admin/awscli/default.nix @@ -19,11 +19,11 @@ let in with py.pkgs; buildPythonApplication rec { pname = "awscli"; - version = "1.18.137"; # N.B: if you change this, change botocore to a matching version too + version = "1.18.150"; # N.B: if you change this, change botocore to a matching version too src = fetchPypi { inherit pname version; - sha256 = "0g745lvmi30di3bbpbca2bkqqzk7g6l3ssmbpi8pvgy0wrfhij69"; + sha256 = "0jrxzr4dx2s6ychmrz19yz8i4kqcwj7f8ly82ydwvrr0ff62374g"; }; postPatch = '' diff --git a/pkgs/tools/admin/chamber/default.nix b/pkgs/tools/admin/chamber/default.nix index fb21bda4150..7a80ed37188 100644 --- a/pkgs/tools/admin/chamber/default.nix +++ b/pkgs/tools/admin/chamber/default.nix @@ -20,7 +20,7 @@ buildGoModule rec { meta = with lib; { description = - "Chamber is a tool for managing secrets by storing them in AWS SSM Parameter Store."; + "A tool for managing secrets by storing them in AWS SSM Parameter Store"; homepage = "https://github.com/segmentio/chamber"; license = licenses.mit; maintainers = with maintainers; [ kalekseev ]; diff --git a/pkgs/tools/admin/daemontools/default.nix b/pkgs/tools/admin/daemontools/default.nix index 660563d9757..2bfdb9b69de 100644 --- a/pkgs/tools/admin/daemontools/default.nix +++ b/pkgs/tools/admin/daemontools/default.nix @@ -36,7 +36,7 @@ stdenv.mkDerivation rec { meta = { license = stdenv.lib.licenses.publicDomain; homepage = "https://cr.yp.to/daemontools.html"; - description = "A collection of tools for managing UNIX services."; + description = "A collection of tools for managing UNIX services"; maintainers = with stdenv.lib.maintainers; [ kevincox ]; platforms = stdenv.lib.platforms.unix; diff --git a/pkgs/tools/admin/eksctl/default.nix b/pkgs/tools/admin/eksctl/default.nix index 74cc3f3f171..271034fa889 100644 --- a/pkgs/tools/admin/eksctl/default.nix +++ b/pkgs/tools/admin/eksctl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "eksctl"; - version = "0.27.0"; + version = "0.30.0"; src = fetchFromGitHub { owner = "weaveworks"; repo = pname; rev = version; - sha256 = "1yclffhr76jd5rzqi37bpdj524lmywmgcfr9r0ahacfkp1hxdn3v"; + sha256 = "0kg966czixkmaaznl7xm751jpx4252nkm99vaigg1iwhlx2yczh9"; }; - vendorSha256 = "133g2d7l1szmpxjdg28yjm3pw6galwq8948rvalnh932kxngkxys"; + vendorSha256 = "1lhs1h0x3ryq0bd5w9ny7i2j9d0x2904br1vlxy677w2xsa9213p"; doCheck = false; diff --git a/pkgs/tools/admin/exoscale-cli/default.nix b/pkgs/tools/admin/exoscale-cli/default.nix index 41fc026092d..e131389aa84 100644 --- a/pkgs/tools/admin/exoscale-cli/default.nix +++ b/pkgs/tools/admin/exoscale-cli/default.nix @@ -2,13 +2,13 @@ buildGoPackage rec { pname = "exoscale-cli"; - version = "1.17.0"; + version = "1.19.0"; src = fetchFromGitHub { owner = "exoscale"; repo = "cli"; rev = "v${version}"; - sha256 = "01bll978dis8pqvgrbigzgszkx3kjm6acrw44z6j7algw3an352r"; + sha256 = "05j9bwg8ph3xysd3rvykfznzs476w6wi6hj4mfg7jzw5r23ddc7k"; }; goPackagePath = "github.com/exoscale/cli"; diff --git a/pkgs/tools/admin/google-cloud-sdk/default.nix b/pkgs/tools/admin/google-cloud-sdk/default.nix index 052638cea9c..53cbaf1229a 100644 --- a/pkgs/tools/admin/google-cloud-sdk/default.nix +++ b/pkgs/tools/admin/google-cloud-sdk/default.nix @@ -21,18 +21,18 @@ let sources = name: system: { x86_64-darwin = { url = "${baseUrl}/${name}-darwin-x86_64.tar.gz"; - sha256 = "0p2csa7155phwc59rgxa5jnj13ansln4bpz161v9g2nmy0cp7i1y"; + sha256 = "1lkmilj873ia8kigyfmqfjnlpi7jzq3q4m0ip3lr0a111nr3wi4m"; }; x86_64-linux = { url = "${baseUrl}/${name}-linux-x86_64.tar.gz"; - sha256 = "1zykpv849wh8qzjvcynbkj0593870rs6s7b2mwyqrjabl7w702zv"; + sha256 = "0q20vaqr9rrzcp57jrskcmbdvqrfpr4lscki85824fdlpklc00ga"; }; }.${system}; in stdenv.mkDerivation rec { pname = "google-cloud-sdk"; - version = "313.0.1"; + version = "315.0.0"; src = fetchurl (sources "${pname}-${version}" stdenv.hostPlatform.system); diff --git a/pkgs/tools/admin/lexicon/default.nix b/pkgs/tools/admin/lexicon/default.nix index 4f02615b4a2..4e87a68866c 100644 --- a/pkgs/tools/admin/lexicon/default.nix +++ b/pkgs/tools/admin/lexicon/default.nix @@ -75,7 +75,7 @@ buildPythonApplication rec { ''; meta = with lib; { - description = "Manipulate DNS records on various DNS providers in a standardized way."; + description = "Manipulate DNS records on various DNS providers in a standardized way"; homepage = "https://github.com/AnalogJ/lexicon"; maintainers = with maintainers; [ flyfloh ]; license = licenses.mit; diff --git a/pkgs/tools/admin/lxd/default.nix b/pkgs/tools/admin/lxd/default.nix index 3d62e39c6ed..331960e6857 100644 --- a/pkgs/tools/admin/lxd/default.nix +++ b/pkgs/tools/admin/lxd/default.nix @@ -18,13 +18,13 @@ let in buildGoPackage rec { pname = "lxd"; - version = "4.6"; + version = "4.7"; goPackagePath = "github.com/lxc/lxd"; src = fetchurl { url = "https://github.com/lxc/lxd/releases/download/${pname}-${version}/${pname}-${version}.tar.gz"; - sha256 = "011fsyafmpis6j0aq7vwd56m2mcb9v3rn4f246ms5nx6zgmga0ip"; + sha256 = "1v95cnbs54gzyhzflwb8x0ykja202nll5p48l2nra7cpdsk4a5q1"; }; postPatch = '' diff --git a/pkgs/tools/admin/nomachine-client/default.nix b/pkgs/tools/admin/nomachine-client/default.nix index 4657c64d330..50083535a2d 100644 --- a/pkgs/tools/admin/nomachine-client/default.nix +++ b/pkgs/tools/admin/nomachine-client/default.nix @@ -1,10 +1,10 @@ { stdenv, file, fetchurl, makeWrapper, autoPatchelfHook, jsoncpp, libpulseaudio }: let - versionMajor = "6.11"; - versionMinor = "2"; - versionBuild_x86_64 = "1"; - versionBuild_i686 = "1"; + versionMajor = "6.12"; + versionMinor = "3"; + versionBuild_x86_64 = "7"; + versionBuild_i686 = "8"; in stdenv.mkDerivation rec { pname = "nomachine-client"; @@ -17,7 +17,7 @@ in "https://download.nomachine.com/download/${versionMajor}/Linux/nomachine_${version}_${versionBuild_x86_64}_x86_64.tar.gz" "https://web.archive.org/web/https://download.nomachine.com/download/${versionMajor}/Linux/nomachine_${version}_${versionBuild_x86_64}_x86_64.tar.gz" ]; - sha256 = "1b6r9bwkr8mhaljma19ikxpkmlx8iy5r1vf5hlv27bja2zz1r8xr"; + sha256 = "1dqsqwxbd77g6gc0hvjmmg4flm3vwwv5y98m8d9wxyybp37vkmgd"; } else if stdenv.hostPlatform.system == "i686-linux" then fetchurl { @@ -25,7 +25,7 @@ in "https://download.nomachine.com/download/${versionMajor}/Linux/nomachine_${version}_${versionBuild_i686}_i686.tar.gz" "https://web.archive.org/web/https://download.nomachine.com/download/${versionMajor}/Linux/nomachine_${version}_${versionBuild_i686}_i686.tar.gz" ]; - sha256 = "0dl138ry9n1qh651zh0zvp88qhgxrs2kvvnq329jw0py5v70b9pm"; + sha256 = "1q14hxjy66s5cpq19rshscsm679csb6p16c5p2agh5zd64cr4am6"; } else throw "NoMachine client is not supported on ${stdenv.hostPlatform.system}"; diff --git a/pkgs/tools/admin/oxidized/default.nix b/pkgs/tools/admin/oxidized/default.nix index 01129c5afb1..022b304a845 100644 --- a/pkgs/tools/admin/oxidized/default.nix +++ b/pkgs/tools/admin/oxidized/default.nix @@ -11,7 +11,7 @@ bundlerApp { passthru.updateScript = bundlerUpdateScript "oxidized"; meta = with lib; { - description = "Oxidized is a network device configuration backup tool. It's a RANCID replacement!"; + description = "A network device configuration backup tool. It's a RANCID replacement!"; homepage = "https://github.com/ytti/oxidized"; license = licenses.asl20; maintainers = with maintainers; [ willibutz nicknovitski ]; diff --git a/pkgs/tools/admin/salt/default.nix b/pkgs/tools/admin/salt/default.nix index 83b69b12fea..3796ec31d6a 100644 --- a/pkgs/tools/admin/salt/default.nix +++ b/pkgs/tools/admin/salt/default.nix @@ -7,11 +7,11 @@ }: python3.pkgs.buildPythonApplication rec { pname = "salt"; - version = "3001.1"; + version = "3002"; src = python3.pkgs.fetchPypi { inherit pname version; - sha256 = "1g2sdcibir0zhldmngv1iyzlhh2adq9dqjc73grap3df5zcv9sz9"; + sha256 = "tiLJ3p/eVx25a/1lmhg76lU90m5xyshWWTh+k3IhquY="; }; propagatedBuildInputs = with python3.pkgs; [ @@ -40,8 +40,9 @@ python3.pkgs.buildPythonApplication rec { meta = with lib; { homepage = "https://saltstack.com/"; + changelog = "https://docs.saltstack.com/en/latest/topics/releases/${version}.html"; description = "Portable, distributed, remote execution and configuration management system"; - maintainers = with maintainers; [ aneeshusa ]; + maintainers = with maintainers; [ Flakebi ]; license = licenses.asl20; }; } diff --git a/pkgs/tools/admin/stripe-cli/default.nix b/pkgs/tools/admin/stripe-cli/default.nix new file mode 100644 index 00000000000..3ceb0e8509c --- /dev/null +++ b/pkgs/tools/admin/stripe-cli/default.nix @@ -0,0 +1,26 @@ +{ stdenv, buildGoModule, fetchFromGitHub }: + +buildGoModule rec { + pname = "stripe-cli"; + version = "1.5.3"; + + src = fetchFromGitHub { + owner = "stripe"; + repo = pname; + rev = "v${version}"; + sha256 = "0anrn7dkxgbzilh45gyqrp2930bkg3g3diarb50qp0rlim302sgy"; + }; + + vendorSha256 = "05cyn9cgmijj6dl075slwm5qc6fj6m5sm414wqm50xz2fjs0400r"; + + subPackages = [ + "cmd/stripe" + ]; + + meta = with stdenv.lib; { + homepage = "https://stripe.com/docs/stripe-cli"; + description = "A command-line tool for Stripe"; + license = with licenses; [ asl20 ]; + maintainers = with maintainers; [ RaghavSood ]; + }; +} diff --git a/pkgs/tools/admin/swiftclient/default.nix b/pkgs/tools/admin/swiftclient/default.nix index 91860d2df08..82480d38d17 100644 --- a/pkgs/tools/admin/swiftclient/default.nix +++ b/pkgs/tools/admin/swiftclient/default.nix @@ -2,11 +2,11 @@ buildPythonApplication rec { pname = "python-swiftclient"; - version = "3.9.0"; + version = "3.10.1"; src = fetchPypi { inherit pname version; - sha256 = "0xx3v5kk8jp352rydy3jxndy1b9kl2zmkj1gi14fjxjc5r4rf82g"; + sha256 = "0176b17aa14cc2ef82a327dc70b66af670bdb39dcf836896f81269db376932ea"; }; propagatedBuildInputs = [ requests six pbr setuptools ]; diff --git a/pkgs/tools/audio/mpd-mpris/default.nix b/pkgs/tools/audio/mpd-mpris/default.nix index 79387d9ad1f..c66a12dadd3 100644 --- a/pkgs/tools/audio/mpd-mpris/default.nix +++ b/pkgs/tools/audio/mpd-mpris/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "mpd-mpris"; - version = "0.2.4"; + version = "0.3.0"; src = fetchFromGitHub { owner = "natsukagami"; repo = pname; rev = "v${version}"; - sha256 = "1cr5j2z2ynj1hwkjzi5amcg59vmgazsci41v6vpsj119g7psjmzm"; + sha256 = "1kzjbv04b2garb99l64wdq8yksnm4pbhkgyzh89j5j3gb9k55zal"; }; - vendorSha256 = "108yjymp64iqx1b2wqjbkmbm2w199wq46g7hrmqhcziv6f4aqljp"; + vendorSha256 = "1ggrqwd3h602rav1dc3amsf4wxsq8mdq4ijkdsg759sqhpzl6rqs"; doCheck = false; diff --git a/pkgs/tools/audio/picotts/default.nix b/pkgs/tools/audio/picotts/default.nix index 023bf457774..5b7ab80d860 100644 --- a/pkgs/tools/audio/picotts/default.nix +++ b/pkgs/tools/audio/picotts/default.nix @@ -13,7 +13,7 @@ stdenv.mkDerivation { sourceRoot = "source/pico"; preConfigure = "./autogen.sh"; meta = { - description = "Text to speech voice sinthesizer from SVox."; + description = "Text to speech voice sinthesizer from SVox"; homepage = "https://github.com/naggety/picotts"; license = stdenv.lib.licenses.asl20; maintainers = [ stdenv.lib.maintainers.canndrew ]; diff --git a/pkgs/tools/backup/bacula/default.nix b/pkgs/tools/backup/bacula/default.nix index 8bf253a7b12..faae85f3ec4 100644 --- a/pkgs/tools/backup/bacula/default.nix +++ b/pkgs/tools/backup/bacula/default.nix @@ -1,4 +1,6 @@ -{ stdenv, fetchurl, sqlite, postgresql, zlib, acl, ncurses, openssl, readline }: +{ stdenv, fetchurl, sqlite, postgresql, zlib, acl, ncurses, openssl, readline +, CoreFoundation, IOKit +}: stdenv.mkDerivation rec { name = "bacula-9.6.5"; @@ -9,6 +11,10 @@ stdenv.mkDerivation rec { }; buildInputs = [ postgresql sqlite zlib ncurses openssl readline ] + ++ stdenv.lib.optionals stdenv.hostPlatform.isDarwin [ + CoreFoundation + IOKit + ] # acl relies on attr, which I can't get to build on darwin ++ stdenv.lib.optional (!stdenv.isDarwin) acl; diff --git a/pkgs/tools/backup/bdsync/default.nix b/pkgs/tools/backup/bdsync/default.nix index 53704ce39d4..be2e9d0e6f2 100644 --- a/pkgs/tools/backup/bdsync/default.nix +++ b/pkgs/tools/backup/bdsync/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "bdsync"; - version = "0.11.1"; + version = "0.11.2"; src = fetchFromGitHub { - owner = "TargetHolding"; + owner = "rolffokkens"; repo = pname; rev = "v${version}"; - sha256 = "11grdyc6fgw93jvj965awsycqw5qbzsdys7n8farqnmya8qv8gac"; + sha256 = "0kx422cp1bxr62i1mi7dzrpwmys1kdp865rcymdp4knb5rr5864k"; }; nativeBuildInputs = [ pandoc which ]; diff --git a/pkgs/tools/backup/borg/default.nix b/pkgs/tools/backup/borg/default.nix index 84da9c3fb57..7bfb9e57392 100644 --- a/pkgs/tools/backup/borg/default.nix +++ b/pkgs/tools/backup/borg/default.nix @@ -62,7 +62,7 @@ python3.pkgs.buildPythonApplication rec { doCheck = false; meta = with stdenv.lib; { - description = "A deduplicating backup program (attic fork)"; + description = "Deduplicating archiver with compression and encryption"; homepage = "https://www.borgbackup.org"; license = licenses.bsd3; platforms = platforms.unix; # Darwin and FreeBSD mentioned on homepage diff --git a/pkgs/tools/backup/bup/default.nix b/pkgs/tools/backup/bup/default.nix index ee6ae0a2934..0765d8a08cd 100644 --- a/pkgs/tools/backup/bup/default.nix +++ b/pkgs/tools/backup/bup/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchFromGitHub, makeWrapper -, perl, pandoc, python2Packages, git +, perl, pandoc, python3Packages, git , par2cmdline ? null, par2Support ? true }: @@ -22,7 +22,7 @@ stdenv.mkDerivation { buildInputs = [ git - (python2Packages.python.withPackages + (python3Packages.python.withPackages (p: with p; [ setuptools tornado ] ++ stdenv.lib.optionals (!stdenv.isDarwin) [ pyxattr pylibacl fuse ])) ]; diff --git a/pkgs/tools/backup/dar/default.nix b/pkgs/tools/backup/dar/default.nix index 1f379feece4..8689bc9cd86 100644 --- a/pkgs/tools/backup/dar/default.nix +++ b/pkgs/tools/backup/dar/default.nix @@ -8,12 +8,12 @@ with stdenv.lib; stdenv.mkDerivation rec { - version = "2.6.10"; + version = "2.6.12"; pname = "dar"; src = fetchurl { url = "mirror://sourceforge/dar/${pname}-${version}.tar.gz"; - sha256 = "1ryj4xxar18hshg38j1ljhplypgmfprwqn72k1jwxi28qravg80n"; + sha256 = "0jwgaim2p93skdpjwiz5qgibd3j9965ycqn47wrrjlcvzk93mvyk"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/tools/backup/dirvish/default.nix b/pkgs/tools/backup/dirvish/default.nix index 9b138d48f21..c762da1a5fc 100644 --- a/pkgs/tools/backup/dirvish/default.nix +++ b/pkgs/tools/backup/dirvish/default.nix @@ -53,7 +53,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "Dirvish is a fast, disk based, rotating network backup system"; + description = "Fast, disk based, rotating network backup system"; homepage = "http://dirvish.org/"; license = stdenv.lib.licenses.osl2; platforms = platforms.linux; diff --git a/pkgs/tools/backup/kopia/default.nix b/pkgs/tools/backup/kopia/default.nix index 056f523a2ca..47d9dc1b378 100644 --- a/pkgs/tools/backup/kopia/default.nix +++ b/pkgs/tools/backup/kopia/default.nix @@ -27,6 +27,7 @@ buildGoModule rec { # make 'vendor' writable cp -L -r vendor tmp-vendor rm -rf vendor + chmod -R u+w tmp-vendor mv tmp-vendor vendor # speakeasy hardcodes /bin/stty https://github.com/bgentry/speakeasy/issues/22 diff --git a/pkgs/tools/backup/mydumper/default.nix b/pkgs/tools/backup/mydumper/default.nix index 88a72762990..611e543ca6c 100644 --- a/pkgs/tools/backup/mydumper/default.nix +++ b/pkgs/tools/backup/mydumper/default.nix @@ -1,6 +1,8 @@ { stdenv, fetchFromGitHub, cmake, pkgconfig , glib, zlib, pcre, libmysqlclient, libressl }: +let inherit (stdenv.lib) getDev; in + stdenv.mkDerivation rec { version = "0.9.5"; pname = "mydumper"; @@ -16,6 +18,8 @@ stdenv.mkDerivation rec { buildInputs = [ glib zlib pcre libmysqlclient libressl ]; + cmakeFlags = [ "-DMYSQL_INCLUDE_DIR=${getDev libmysqlclient}/include/mysql" ]; + meta = with stdenv.lib; { description = ''High-perfomance MySQL backup tool''; homepage = "https://github.com/maxbube/mydumper"; diff --git a/pkgs/tools/backup/restic/default.nix b/pkgs/tools/backup/restic/default.nix index 33cac4ad229..6839b47a5ff 100644 --- a/pkgs/tools/backup/restic/default.nix +++ b/pkgs/tools/backup/restic/default.nix @@ -1,25 +1,29 @@ -{ stdenv, lib, buildGoPackage, fetchFromGitHub, installShellFiles, makeWrapper +{ stdenv, lib, buildGoModule, fetchFromGitHub, installShellFiles, makeWrapper , nixosTests, rclone }: -buildGoPackage rec { +buildGoModule rec { pname = "restic"; - version = "0.9.6"; - - goPackagePath = "github.com/restic/restic"; + version = "0.10.0"; src = fetchFromGitHub { owner = "restic"; repo = "restic"; rev = "v${version}"; - sha256 = "0lydll93n1lcn1fl669b9cikmzz9d6vfpc8ky3ng5fi8kj3v1dz7"; + sha256 = "0nrh52cjymzcf093sqqa3kfw2nimnx6qwn8aw0wsci2v2r84yzzx"; }; + vendorSha256 = "1pfixq3mbfn12gyablc4g0j8r00md3887q0l8xgxy76z0d8w924s"; + subPackages = [ "cmd/restic" ]; nativeBuildInputs = [ installShellFiles makeWrapper ]; passthru.tests.restic = nixosTests.restic; + postPatch = '' + rm cmd/restic/integration_fuse_test.go + ''; + postInstall = '' wrapProgram $out/bin/restic --prefix PATH : '${rclone}/bin' '' + lib.optionalString (stdenv.hostPlatform == stdenv.buildPlatform) '' diff --git a/pkgs/tools/backup/zfs-replicate/default.nix b/pkgs/tools/backup/zfs-replicate/default.nix index ff2f6062554..782133fd8d7 100644 --- a/pkgs/tools/backup/zfs-replicate/default.nix +++ b/pkgs/tools/backup/zfs-replicate/default.nix @@ -4,11 +4,11 @@ buildPythonApplication rec { pname = "zfs-replicate"; - version = "1.1.14"; + version = "1.2.3"; src = fetchPypi { inherit pname version; - sha256 = "0iqyk6q112ylcqrhrgvgbgqqvaikhwk0sb5kc7kg2wwqdc9rfwys"; + sha256 = "b2cb9d4670a6e12d14a446c10d857862e91af6e4526f607e08b41bde89953bb8"; }; checkInputs = [ diff --git a/pkgs/tools/bluetooth/blueman/default.nix b/pkgs/tools/bluetooth/blueman/default.nix index aa8693b365a..ac50f3667c4 100644 --- a/pkgs/tools/bluetooth/blueman/default.nix +++ b/pkgs/tools/bluetooth/blueman/default.nix @@ -9,11 +9,11 @@ let in stdenv.mkDerivation rec { pname = "blueman"; - version = "2.1.3"; + version = "2.1.4"; src = fetchurl { url = "https://github.com/blueman-project/blueman/releases/download/${version}/${pname}-${version}.tar.xz"; - sha256 = "1pngqbwapbvywhkmflapqvs0wa0af7d1a87wy56l5hg2r462xl1v"; + sha256 = "1nk46s1s8yrlqv37sc7la05nnn7sdgqhkrcdm98qin34llwkv70x"; }; nativeBuildInputs = [ diff --git a/pkgs/tools/bluetooth/bluez-alsa/default.nix b/pkgs/tools/bluetooth/bluez-alsa/default.nix index 09f5471de48..588049cb976 100644 --- a/pkgs/tools/bluetooth/bluez-alsa/default.nix +++ b/pkgs/tools/bluetooth/bluez-alsa/default.nix @@ -13,13 +13,13 @@ with stdenv.lib; stdenv.mkDerivation rec { pname = "bluez-alsa"; - version = "2.1.0"; + version = "3.0.0"; src = fetchFromGitHub { owner = "Arkq"; repo = "bluez-alsa"; rev = "v${version}"; - sha256 = "112dfqxc144a61jqil2s3181gngfw5vz7yy10ml4f5a1nd90qnci"; + sha256 = "1jlsgxyqfhncfhx1sy3ry0dp6p95kd4agh7g2b7g51h0c4cv74h8"; }; nativeBuildInputs = [ pkgconfig autoreconfHook ]; diff --git a/pkgs/tools/compression/pbzx/default.nix b/pkgs/tools/compression/pbzx/default.nix index 13e5882788d..2804ed7a0b5 100644 --- a/pkgs/tools/compression/pbzx/default.nix +++ b/pkgs/tools/compression/pbzx/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { cp pbzx $out/bin ''; meta = with lib; { - description = "Stream parser of Apple's pbzx compression format."; + description = "Stream parser of Apple's pbzx compression format"; platforms = platforms.unix; license = licenses.gpl3; maintainers = [ maintainers.matthewbauer ]; diff --git a/pkgs/tools/compression/xz/default.nix b/pkgs/tools/compression/xz/default.nix index 5cf88288d81..0b6082bb578 100644 --- a/pkgs/tools/compression/xz/default.nix +++ b/pkgs/tools/compression/xz/default.nix @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://tukaani.org/xz/"; - description = "XZ, general-purpose data compression software, successor of LZMA"; + description = "A general-purpose data compression software, successor of LZMA"; longDescription = '' XZ Utils is free general-purpose data compression software with high diff --git a/pkgs/tools/compression/zstd/default.nix b/pkgs/tools/compression/zstd/default.nix index 8ce434741a5..c26ca507525 100644 --- a/pkgs/tools/compression/zstd/default.nix +++ b/pkgs/tools/compression/zstd/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake ] ++ stdenv.lib.optional stdenv.isDarwin fixDarwinDylibNames; - buildInputs = [ bash ]; + buildInputs = stdenv.lib.optional stdenv.hostPlatform.isUnix bash; patches = [ ./playtests-darwin.patch @@ -72,7 +72,9 @@ stdenv.mkDerivation rec { --replace "zstdcat" "$bin/bin/zstdcat" ''; - outputs = [ "bin" "dev" "man" "out" ]; + outputs = [ "bin" "dev" ] + ++ stdenv.lib.optional stdenv.hostPlatform.isUnix "man" + ++ [ "out" ]; meta = with stdenv.lib; { description = "Zstandard real-time compression algorithm"; diff --git a/pkgs/tools/filesystems/btrfs-progs/default.nix b/pkgs/tools/filesystems/btrfs-progs/default.nix index 8ff72421a59..3358d1c0277 100644 --- a/pkgs/tools/filesystems/btrfs-progs/default.nix +++ b/pkgs/tools/filesystems/btrfs-progs/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { pname = "btrfs-progs"; - version = "5.7"; + version = "5.9"; src = fetchurl { url = "mirror://kernel/linux/kernel/people/kdave/btrfs-progs/btrfs-progs-v${version}.tar.xz"; - sha256 = "0p6ycbr8sw5bq3mj84gh9rvh5sk8sjr2l9hb9dhm4j41ij5h8bsw"; + sha256 = "14d7hz07kfczfgmy1ixkgccjn393gpkjn7givz5kwxddcnk5i4xq"; }; nativeBuildInputs = [ diff --git a/pkgs/tools/filesystems/convoy/default.nix b/pkgs/tools/filesystems/convoy/default.nix index f12187be810..3372ec83530 100644 --- a/pkgs/tools/filesystems/convoy/default.nix +++ b/pkgs/tools/filesystems/convoy/default.nix @@ -18,7 +18,7 @@ buildGoPackage rec { meta = with stdenv.lib; { homepage = "https://github.com/rancher/convoy"; - description = "A Docker volume plugin, managing persistent container volumes."; + description = "A Docker volume plugin, managing persistent container volumes"; license = licenses.asl20; maintainers = with maintainers; [ offline ]; platforms = platforms.linux; diff --git a/pkgs/tools/filesystems/fatresize/default.nix b/pkgs/tools/filesystems/fatresize/default.nix index c1d048889c7..79551df00ee 100644 --- a/pkgs/tools/filesystems/fatresize/default.nix +++ b/pkgs/tools/filesystems/fatresize/default.nix @@ -1,38 +1,26 @@ -{ stdenv, fetchurl, parted, utillinux }: +{ stdenv, fetchFromGitHub, parted, utillinux, pkg-config }: stdenv.mkDerivation rec { - version = "1.0.2"; + version = "1.1.0"; pname = "fatresize"; - src = fetchurl { - url = "mirror://sourceforge/fatresize/fatresize-${version}.tar.bz2"; - sha256 = "04wp48jpdvq4nn0dgbw5za07g842rnxlh9mig4mslz70zqs0izjm"; + src = fetchFromGitHub { + owner = "ya-mouse"; + repo = "fatresize"; + rev = "v${version}"; + sha256 = "1vhz84kxfyl0q7mkqn68nvzzly0a4xgzv76m6db0bk7xyczv1qr2"; }; buildInputs = [ parted utillinux ]; - - # This patch helps this unmantained piece of software to be built against recent parted - # It basically modifies the detection scheme for parted version (the current one has no micro version defined) - # The second change is to include a header for a moved function since 1.6+ to current 3.1+ parted - # The third change is to modify the call to PED_ASSERT that is no longer defined with 2 params - patches = [ ./fatresize_parted_nix.patch ]; - - preConfigure = '' - echo "Replacing calls to ped_free with free ..." - substituteInPlace ./fatresize.c --replace ped_free free - ''; - - # Filesystem resize functions were reintroduced in parted 3.1 due to no other available free alternatives - # but in a sepparate library -> libparted-fs-resize --- that's why the added LDFLAG - makeFlags = [ "LDFLAGS=-lparted-fs-resize" ]; + nativeBuildInputs = [ pkg-config ]; propagatedBuildInputs = [ parted utillinux ]; meta = with stdenv.lib; { description = "The FAT16/FAT32 non-destructive resizer"; - homepage = "https://sourceforge.net/projects/fatresize"; + homepage = "https://github.com/ya-mouse/fatresize"; platforms = platforms.linux; - license = licenses.gpl2; + license = licenses.gpl3; }; } diff --git a/pkgs/tools/filesystems/fatresize/fatresize_parted_nix.patch b/pkgs/tools/filesystems/fatresize/fatresize_parted_nix.patch deleted file mode 100644 index e9aa87a2d56..00000000000 --- a/pkgs/tools/filesystems/fatresize/fatresize_parted_nix.patch +++ /dev/null @@ -1,74 +0,0 @@ -diff --git a/aclocal.m4 b/aclocal.m4 -index 18e8176..2e75592 100644 ---- a/aclocal.m4 -+++ b/aclocal.m4 -@@ -88,8 +88,15 @@ int main () - if ( !(version = ped_get_version ()) ) - exit(1); - if (sscanf(version, "%d.%d.%d", &major, &minor, µ) != 3) { -- printf("%s, bad version string\n", version); -- exit(1); -+ if (sscanf(version, "%d.%d", &major, &minor) != 2) -+ { -+ printf("%s, bad version string\n", version); -+ exit(1); -+ } -+ else -+ { -+ micro = 0; -+ } - } - - if ((major > $parted_config_major_version) || -diff --git a/configure b/configure -index ed31457..e5f1705 100755 ---- a/configure -+++ b/configure -@@ -4793,8 +4793,15 @@ int main () - if ( !(version = ped_get_version ()) ) - exit(1); - if (sscanf(version, "%d.%d.%d", &major, &minor, µ) != 3) { -- printf("%s, bad version string\n", version); -- exit(1); -+ if (sscanf(version, "%d.%d", &major, &minor) != 2) -+ { -+ printf("%s, bad version string\n", version); -+ exit(1); -+ } -+ else -+ { -+ micro = 0; -+ } - } - - if ((major > $parted_config_major_version) || -diff --git a/fatresize.c b/fatresize.c -index 424d5d2..e439102 100644 ---- a/fatresize.c -+++ b/fatresize.c -@@ -30,6 +30,7 @@ - #include - #include - #include -+#include - #include - - #include "config.h" -@@ -217,7 +218,7 @@ fatresize_handler(PedException *ex) - static int - snap(PedSector* sector, PedSector new_sector, PedGeometry* range) - { -- PED_ASSERT(ped_geometry_test_sector_inside (range, *sector), return 0); -+ PED_ASSERT(ped_geometry_test_sector_inside (range, *sector)); - if (!ped_geometry_test_sector_inside(range, new_sector)) - return 0; - -@@ -281,7 +282,7 @@ snap_to_boundaries (PedGeometry* new_geom, PedGeometry* old_geom, - end_part->geom.end, end_part->geom.start - 1, -1); - } - -- PED_ASSERT (start <= end, return); -+ PED_ASSERT (start <= end); - ped_geometry_set (new_geom, start, end - start + 1); - } - diff --git a/pkgs/tools/filesystems/glusterfs/default.nix b/pkgs/tools/filesystems/glusterfs/default.nix index 44880638e65..e7028ec1249 100644 --- a/pkgs/tools/filesystems/glusterfs/default.nix +++ b/pkgs/tools/filesystems/glusterfs/default.nix @@ -2,7 +2,7 @@ autoconf, automake, libtool, pkgconfig, zlib, libaio, libxml2, acl, sqlite, liburcu, attr, makeWrapper, coreutils, gnused, gnugrep, which, openssh, gawk, findutils, utillinux, lvm2, btrfs-progs, e2fsprogs, xfsprogs, systemd, - rsync, glibc + rsync, glibc, rpcsvc-proto, libtirpc }: let s = @@ -24,7 +24,7 @@ let buildInputs = [ fuse bison flex_2_5_35 openssl ncurses readline autoconf automake libtool pkgconfig zlib libaio libxml2 - acl sqlite liburcu attr makeWrapper utillinux + acl sqlite liburcu attr makeWrapper utillinux libtirpc (python3.withPackages (pkgs: [ pkgs.flask pkgs.prettytable @@ -100,6 +100,8 @@ stdenv.mkDerivation ''--localstatedir=/var'' ]; + nativeBuildInputs = [ rpcsvc-proto ]; + makeFlags = [ "DESTDIR=$(out)" ]; enableParallelBuilding = true; diff --git a/pkgs/tools/filesystems/hfsprogs/default.nix b/pkgs/tools/filesystems/hfsprogs/default.nix index 2032ca1c1e7..e08835fc35d 100644 --- a/pkgs/tools/filesystems/hfsprogs/default.nix +++ b/pkgs/tools/filesystems/hfsprogs/default.nix @@ -15,6 +15,10 @@ stdenv.mkDerivation { }) ]; + postPatch = '' + sed -ie '/sys\/sysctl.h/d' newfs_hfs.tproj/makehfs.c + ''; + sourceRoot = "diskdev_cmds-" + version; patches = [ "../debian/patches/*.patch" ]; diff --git a/pkgs/tools/filesystems/httpfs/default.nix b/pkgs/tools/filesystems/httpfs/default.nix index d97b05abb6c..23edb817579 100644 --- a/pkgs/tools/filesystems/httpfs/default.nix +++ b/pkgs/tools/filesystems/httpfs/default.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { ''; meta = { - description = "HTTPFS2, a FUSE-based HTTP file system for Linux"; + description = "FUSE-based HTTP filesystem for Linux"; homepage = "http://httpfs.sourceforge.net/"; diff --git a/pkgs/tools/filesystems/mergerfs/default.nix b/pkgs/tools/filesystems/mergerfs/default.nix index a7c9421f46a..ba7d5456d86 100644 --- a/pkgs/tools/filesystems/mergerfs/default.nix +++ b/pkgs/tools/filesystems/mergerfs/default.nix @@ -2,25 +2,28 @@ stdenv.mkDerivation rec { pname = "mergerfs"; - version = "2.28.3"; + version = "2.31.0"; src = fetchFromGitHub { owner = "trapexit"; repo = pname; rev = version; - sha256 = "1w6p3svc2yknp6swqg8lax6n9b31lyplb3j7r8nv14hbq4hymylx"; + sha256 = "0j7nbxzv85as76glzk4cf7j6ggfihcjaihp06s0zcar4i7zaiy9z"; }; nativeBuildInputs = [ automake autoconf pkgconfig gettext libtool pandoc which ]; + prePatch = '' + sed -i -e '/chown/d' -e '/chmod/d' libfuse/Makefile + ''; buildInputs = [ attr libiconv ]; preConfigure = '' echo "${version}" > VERSION ''; - makeFlags = [ "PREFIX=${placeholder "out"}" "XATTR_AVAILABLE=1" ]; + makeFlags = [ "DESTDIR=${placeholder "out"}" "XATTR_AVAILABLE=1" "PREFIX=/" "SBINDIR=/bin" ]; enableParallelBuilding = true; postFixup = '' diff --git a/pkgs/tools/filesystems/moosefs/default.nix b/pkgs/tools/filesystems/moosefs/default.nix index df3dd661d75..2be21cea3a5 100644 --- a/pkgs/tools/filesystems/moosefs/default.nix +++ b/pkgs/tools/filesystems/moosefs/default.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "moosefs"; - version = "3.0.114"; + version = "3.0.115"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "0bilrzzlg599xy21cm7r0xb2sanngr74j3z03xgybcm10kl97i7j"; + sha256 = "0dap9dqwwx8adma6arxg015riqc86cmjv2m44hk0kz7s24h79ipq"; }; nativeBuildInputs = [ pkgconfig makeWrapper ]; diff --git a/pkgs/tools/graphics/dpic/default.nix b/pkgs/tools/graphics/dpic/default.nix index 7b7eea3d509..ea65f3dbb55 100644 --- a/pkgs/tools/graphics/dpic/default.nix +++ b/pkgs/tools/graphics/dpic/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "dpic"; - version = "2020.06.01"; + version = "2020.09.15"; src = fetchurl { url = "https://ece.uwaterloo.ca/~aplevich/dpic/${pname}-${version}.tar.gz"; - sha256 = "1gbkpbjwjaaifxff8amm9b47dynq4l4698snjdgnn4flndw62q88"; + sha256 = "0gmmp4dlir3bn892nm55a3q8cfsj8yg7fp1dixmhsdhsrgmg1b83"; }; # The prefix passed to configure is not used. diff --git a/pkgs/tools/graphics/gifski/default.nix b/pkgs/tools/graphics/gifski/default.nix index 4758dece42f..612db49c8a4 100644 --- a/pkgs/tools/graphics/gifski/default.nix +++ b/pkgs/tools/graphics/gifski/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "gifski"; - version = "1.2.0"; + version = "1.2.2"; src = fetchFromGitHub { owner = "ImageOptim"; repo = "gifski"; rev = version; - sha256 = "0yziqgvjjb5bblmm060li7dv1i23gpn0f75jb72z8cdf2wg1qmxb"; + sha256 = "175wlvn6psa3xx9g2i05xykk24wpmkr0m27rm95jyi0kzlqdc466"; }; - cargoSha256 = "1y4q6p6hbmpwdpahmspgngm842qrq1srl7319wslq9ydl09m1x3x"; + cargoSha256 = "01gf8v6q2rpaik6dyxch8n2mpaxp222v32zrw19059hn3smg98l0"; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/tools/graphics/optar/default.nix b/pkgs/tools/graphics/optar/default.nix index 4eee8acb979..3061a5cebaf 100644 --- a/pkgs/tools/graphics/optar/default.nix +++ b/pkgs/tools/graphics/optar/default.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation { ''; meta = with stdenv.lib; { - description = "Optar stands for OPTical ARchiver - it's a codec for encoding data on paper"; + description = "OPTical ARchiver - it's a codec for encoding data on paper"; homepage = "http://ronja.twibright.com/optar/"; license = licenses.gpl2; maintainers = with maintainers; [ peterhoeg ]; diff --git a/pkgs/tools/graphics/pfstools/default.nix b/pkgs/tools/graphics/pfstools/default.nix index 1c437a3f05c..f570251374c 100644 --- a/pkgs/tools/graphics/pfstools/default.nix +++ b/pkgs/tools/graphics/pfstools/default.nix @@ -1,9 +1,9 @@ -{ stdenv, fetchurl, cmake, pkgconfig, darwin +{ stdenv, mkDerivation, fetchurl, cmake, pkgconfig, darwin , openexr, zlib, imagemagick, libGLU, libGL, freeglut, fftwFloat -, fftw, gsl, libexif, perl, opencv2, qt5, netpbm +, fftw, gsl, libexif, perl, opencv2, qtbase, netpbm }: -stdenv.mkDerivation rec { +mkDerivation rec { pname = "pfstools"; version = "2.1.0"; @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake pkgconfig ]; buildInputs = [ openexr zlib imagemagick fftwFloat - fftw gsl libexif perl opencv2 qt5.qtbase netpbm + fftw gsl libexif perl opencv2 qtbase netpbm ] ++ (if stdenv.isDarwin then (with darwin.apple_sdk.frameworks; [ OpenGL GLUT ]) else [ diff --git a/pkgs/tools/graphics/resvg/default.nix b/pkgs/tools/graphics/resvg/default.nix new file mode 100644 index 00000000000..ea6a75eb3a5 --- /dev/null +++ b/pkgs/tools/graphics/resvg/default.nix @@ -0,0 +1,24 @@ +{ lib, rustPlatform, fetchFromGitHub }: + +rustPlatform.buildRustPackage rec { + pname = "resvg"; + version = "0.11.0"; + + src = fetchFromGitHub { + owner = "RazrFalcon"; + repo = pname; + rev = "v${version}"; + sha256 = "1qaca8wqwi2wqqx1yladjb4clgqdzsm8b7qsiaw0qascddjw1mcc"; + }; + + cargoSha256 = "1y10xzdf5kxbi9930qfsmryrbrkx1wmc5b216l9wcxq6cd77hxy2"; + + doCheck = false; + + meta = with lib; { + description = "An SVG rendering library"; + homepage = "https://github.com/RazrFalcon/resvg"; + license = licenses.mpl20; + maintainers = [ maintainers.marsam ]; + }; +} diff --git a/pkgs/tools/graphics/vulkan-tools/default.nix b/pkgs/tools/graphics/vulkan-tools/default.nix index 71bcdc2e269..e320e4e6ef3 100644 --- a/pkgs/tools/graphics/vulkan-tools/default.nix +++ b/pkgs/tools/graphics/vulkan-tools/default.nix @@ -1,22 +1,33 @@ -{ stdenv, fetchFromGitHub, cmake, python3, vulkan-loader, vulkan-headers, - glslang, pkgconfig, xlibsWrapper, libxcb, libXrandr, wayland }: +{ stdenv, lib, fetchFromGitHub, cmake, python3, vulkan-loader, + vulkan-headers, glslang, pkgconfig, xlibsWrapper, libxcb, + libXrandr, wayland }: stdenv.mkDerivation rec { pname = "vulkan-tools"; - version = "1.2.131.1"; + version = "1.2.141.0"; src = fetchFromGitHub { owner = "KhronosGroup"; repo = "Vulkan-Tools"; rev = "sdk-${version}"; - sha256 = "0ws47ansrr8cq4qjf6k4q0ygm9wwd3w7mhwqcl1qxms8lh5vmhfq"; + sha256 = "1ch56ihm7rmilipfyc4i4ww7l6i20fb3qikkpm1ch43kzn42zjaw"; }; nativeBuildInputs = [ cmake pkgconfig ]; buildInputs = [ python3 vulkan-headers vulkan-loader xlibsWrapper libxcb libXrandr wayland ]; enableParallelBuilding = true; - cmakeFlags = [ "-DBUILD_ICD=OFF" "-DGLSLANG_INSTALL_DIR=${glslang}" ]; + libraryPath = lib.strings.makeLibraryPath [ vulkan-loader ]; + + dontPatchELF = true; + + cmakeFlags = [ + # Don't build the mock ICD as it may get used instead of other drivers, if installed + "-DBUILD_ICD=OFF" + "-DGLSLANG_INSTALL_DIR=${glslang}" + # vulkaninfo loads libvulkan using dlopen, so we have to add it manually to RPATH + "-DCMAKE_INSTALL_RPATH=${libraryPath}" + ]; meta = with stdenv.lib; { description = "LunarG Vulkan loader"; diff --git a/pkgs/tools/inputmethods/hime/default.nix b/pkgs/tools/inputmethods/hime/default.nix index cce1ec49515..4d2b44456ae 100644 --- a/pkgs/tools/inputmethods/hime/default.nix +++ b/pkgs/tools/inputmethods/hime/default.nix @@ -1,9 +1,10 @@ { stdenv, fetchFromGitHub, pkgconfig, which, gtk2, gtk3, qt4, qt5, libXtst, lib, -enableChewing ? true, libchewing, -enableAnthy ? true, anthy, }: +# chewing and anthy do not work well +# so we do not enable these input method at this moment + stdenv.mkDerivation { name = "hime"; version = "unstable-2020-06-27"; @@ -16,25 +17,18 @@ stdenv.mkDerivation { }; nativeBuildInputs = [ which pkgconfig ]; - buildInputs = [ libXtst gtk2 gtk3 qt4 qt5.qtbase ] - ++ lib.optional enableChewing libchewing - ++ lib.optional enableAnthy anthy; + buildInputs = [ libXtst gtk2 gtk3 qt4 qt5.qtbase ]; - patchPhase = '' - patchShebangs configure - ''; - - # The configure script already auto-detect libchewing and anthy, - # so we do not need additional flags for libchewing or anthy + preConfigure = "patchShebangs configure"; configureFlags = [ "--disable-lib64" "--disable-qt5-immodule" ]; meta = with stdenv.lib; { - homepage = "http://hime-ime.github.io/"; - downloadPage = "https://github.com/hime-ime/hime/downloads"; - description = "A useful input method engine for Asia region"; - license = licenses.gpl2Plus; - platforms = platforms.linux; - maintainers = with maintainers; [ yanganto ]; + homepage = "http://hime-ime.github.io/"; + downloadPage = "https://github.com/hime-ime/hime/downloads"; + description = "A useful input method engine for Asia region"; + license = licenses.gpl2Plus; + platforms = platforms.linux; + maintainers = with maintainers; [ yanganto ]; }; } diff --git a/pkgs/tools/inputmethods/ibus-engines/ibus-hangul/default.nix b/pkgs/tools/inputmethods/ibus-engines/ibus-hangul/default.nix index 978ac675581..f6ceece34e1 100644 --- a/pkgs/tools/inputmethods/ibus-engines/ibus-hangul/default.nix +++ b/pkgs/tools/inputmethods/ibus-engines/ibus-hangul/default.nix @@ -13,11 +13,11 @@ stdenv.mkDerivation rec { pname = "ibus-hangul"; - version = "1.5.3"; + version = "1.5.4"; src = fetchurl { url = "https://github.com/choehwanjin/ibus-hangul/releases/download/${version}/${pname}-${version}.tar.gz"; - sha256 = "1400ba2p34vr9q285lqvjm73f6m677cgfdymmjpiwyrjgbbiqrjy"; + sha256 = "1q6g2pnrn5gqn9jqnm3975v9hh60hc5gn9x3zbrdjgy0n3wpxwm9"; }; patches = [ diff --git a/pkgs/tools/inputmethods/keyfuzz/default.nix b/pkgs/tools/inputmethods/keyfuzz/default.nix index 489a24c3a58..0b2883f70a4 100644 --- a/pkgs/tools/inputmethods/keyfuzz/default.nix +++ b/pkgs/tools/inputmethods/keyfuzz/default.nix @@ -5,7 +5,7 @@ stdenv.mkDerivation { version = "0.2"; meta = with stdenv.lib; { - description = "Manipulate the scancode/keycode translation tables of keyboard drivers."; + description = "Manipulate the scancode/keycode translation tables of keyboard drivers"; homepage = "http://0pointer.de/lennart/projects/keyfuzz/"; license = licenses.gpl2Plus; platforms = platforms.linux; diff --git a/pkgs/tools/misc/adafruit-ampy/default.nix b/pkgs/tools/misc/adafruit-ampy/default.nix index be47d42dc89..31ef3e2487b 100644 --- a/pkgs/tools/misc/adafruit-ampy/default.nix +++ b/pkgs/tools/misc/adafruit-ampy/default.nix @@ -20,7 +20,7 @@ buildPythonApplication rec { meta = with stdenv.lib; { homepage = "https://github.com/pycampers/ampy"; license = licenses.mit; - description = "Utility to interact with a MicroPython board over a serial connection."; + description = "Utility to interact with a MicroPython board over a serial connection"; maintainers = with maintainers; [ etu ]; }; } diff --git a/pkgs/tools/misc/aptly/default.nix b/pkgs/tools/misc/aptly/default.nix index 3c97c168429..6af3238dbd7 100644 --- a/pkgs/tools/misc/aptly/default.nix +++ b/pkgs/tools/misc/aptly/default.nix @@ -2,14 +2,14 @@ let - version = "1.3.0"; + version = "1.4.0"; rev = "v${version}"; aptlySrc = fetchFromGitHub { inherit rev; owner = "aptly-dev"; repo = "aptly"; - sha256 = "032gw8qkxcgc0jyrvzqh7jkbmk4k0gf7j74hyhclfnjmd9548f5l"; + sha256 = "06cq761r3bxybb9xn58jii0ggp79mcp3810z1r2z3xcvplwhwnhy"; }; aptlyCompletionSrc = fetchFromGitHub { diff --git a/pkgs/tools/misc/asciinema-scenario/default.nix b/pkgs/tools/misc/asciinema-scenario/default.nix index 29538f94017..cff96a4ec86 100644 --- a/pkgs/tools/misc/asciinema-scenario/default.nix +++ b/pkgs/tools/misc/asciinema-scenario/default.nix @@ -15,7 +15,7 @@ rustPlatform.buildRustPackage rec { cargoSha256 = "109ij5h31bhn44l0wywgpnnlfjgyairxr5l19s6bz47sbka0xyxk"; meta = with stdenv.lib; { - description = "Create asciinema videos from a text file."; + description = "Create asciinema videos from a text file"; homepage = "https://github.com/garbas/asciinema-scenario/"; maintainers = with maintainers; [ garbas ]; license = with licenses; [ mit ]; diff --git a/pkgs/tools/misc/bandwidth/default.nix b/pkgs/tools/misc/bandwidth/default.nix index 5de77aea0e0..8cd926c5c27 100644 --- a/pkgs/tools/misc/bandwidth/default.nix +++ b/pkgs/tools/misc/bandwidth/default.nix @@ -11,11 +11,11 @@ let in stdenv.mkDerivation rec { pname = "bandwidth"; - version = "1.9.3"; + version = "1.9.4"; src = fetchurl { url = "https://zsmith.co/archives/${pname}-${version}.tar.gz"; - sha256 = "0zpv2qgkbak0llw47qcakhyh2z3zv4d69kasldmpdlpqryd9za84"; + sha256 = "0x798xj3vhiwq2hal0vmf92sq4h7yalp3i6ylqwhnnpv99m2zws4"; }; buildInputs = [ nasm ]; diff --git a/pkgs/tools/misc/bat/default.nix b/pkgs/tools/misc/bat/default.nix index e5b06521d72..b84ef63edc9 100644 --- a/pkgs/tools/misc/bat/default.nix +++ b/pkgs/tools/misc/bat/default.nix @@ -26,11 +26,6 @@ rustPlatform.buildRustPackage rec { buildInputs = stdenv.lib.optionals stdenv.isDarwin [ Security libiconv ]; - # Remove after https://github.com/NixOS/nixpkgs/pull/97000 lands into master - preConfigure = stdenv.lib.optionalString stdenv.isDarwin '' - unset SDKROOT - ''; - postInstall = '' installManPage $releaseDir/build/bat-*/out/assets/manual/bat.1 installShellCompletion $releaseDir/build/bat-*/out/assets/completions/bat.{fish,zsh} diff --git a/pkgs/tools/misc/bdf2psf/default.nix b/pkgs/tools/misc/bdf2psf/default.nix index 966e71bb6d3..2b3445ac6c3 100644 --- a/pkgs/tools/misc/bdf2psf/default.nix +++ b/pkgs/tools/misc/bdf2psf/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "bdf2psf"; - version = "1.196"; + version = "1.197"; src = fetchurl { url = "mirror://debian/pool/main/c/console-setup/bdf2psf_${version}_all.deb"; - sha256 = "042ly91525q2qj7985qih4njhjk5ndz8jiz01v860jc38bvw595p"; + sha256 = "023zj08rk8pmvpr8zybxn2ibrl5qsarkn8rb908mxhhlwpp12f7n"; }; nativeBuildInputs = [ dpkg ]; diff --git a/pkgs/tools/misc/bdf2sfd/default.nix b/pkgs/tools/misc/bdf2sfd/default.nix index e7a9d98aaf2..09616499045 100644 --- a/pkgs/tools/misc/bdf2sfd/default.nix +++ b/pkgs/tools/misc/bdf2sfd/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "bdf2sfd"; - version = "1.1.3"; + version = "1.1.4"; src = fetchFromGitHub { owner = "fcambus"; repo = pname; rev = version; - sha256 = "0v1kkds35qfyv1h5kxc2m7f2gsprg9c7jzpsm3p4f71qn982wry6"; + sha256 = "1lg3yabnf26lghlrmhpq7hbhydmw85q0k64246b8fwv1dnxc7afd"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/tools/misc/birdfont/default.nix b/pkgs/tools/misc/birdfont/default.nix index 7cec0cab996..c3361739f0b 100644 --- a/pkgs/tools/misc/birdfont/default.nix +++ b/pkgs/tools/misc/birdfont/default.nix @@ -4,11 +4,11 @@ gobject-introspection, gsettings-desktop-schemas, wrapGAppsHook }: stdenv.mkDerivation rec { pname = "birdfont"; - version = "2.29.0"; + version = "2.29.1"; src = fetchurl { url = "https://birdfont.org/releases/${pname}-${version}.tar.xz"; - sha256 = "18z3qbrsbfpn00c4xq3ck1mnmvrnqgl9g1s7m4dgc1871fi6sv8w"; + sha256 = "0620bppcbm9pb8l0d4sc56gfwkr97gw4zjirjz5ikk5lj0m801yi"; }; nativeBuildInputs = [ python3 pkgconfig vala_0_44 gobject-introspection wrapGAppsHook ]; diff --git a/pkgs/tools/misc/broot/default.nix b/pkgs/tools/misc/broot/default.nix index 62ca179cfde..077d5dc777c 100644 --- a/pkgs/tools/misc/broot/default.nix +++ b/pkgs/tools/misc/broot/default.nix @@ -5,26 +5,24 @@ , makeWrapper , coreutils , libiconv -, xcbuild , zlib , Security }: rustPlatform.buildRustPackage rec { pname = "broot"; - version = "1.0.0"; + version = "1.0.4"; src = fetchCrate { inherit pname version; - sha256 = "1dc6lb6ihj4s0mcp1say16j9yr61jdbzhmayxxsm4ansngbzmw45"; + sha256 = "06gq7xn9g5wk6d5p732998q7lxbw2g6qb8vsv95jcnybarf88n1v"; }; - cargoSha256 = "0nqmincayjv1snxz94i14fypc9dv69fxfqqdz3qbcvc2cs62zayg"; + cargoSha256 = "1cbvi3jgj78gly3xkqbn8ai0ra5hpdphpdy7cphlrym0aj77ck4a"; nativeBuildInputs = [ makeWrapper installShellFiles - xcbuild # The cc crate attempts to run xcbuild. ]; buildInputs = stdenv.lib.optionals stdenv.isDarwin [ diff --git a/pkgs/tools/misc/buildtorrent/default.nix b/pkgs/tools/misc/buildtorrent/default.nix index 150371f82b6..d3d3651c2b0 100644 --- a/pkgs/tools/misc/buildtorrent/default.nix +++ b/pkgs/tools/misc/buildtorrent/default.nix @@ -1,20 +1,18 @@ { stdenv, fetchurl }: -let version = "0.8"; in - stdenv.mkDerivation rec { pname = "buildtorrent"; - inherit version; + version = "0.8"; src = fetchurl { url = "https://mathr.co.uk/blog/code/${pname}-${version}.tar.gz"; - sha256 = "e8e27647bdb38873ac570d46c1a9689a92b01bb67f59089d1cdd08784f7052d0"; + sha256 = "sha256-6OJ2R72ziHOsVw1GwalompKwG7Z/WQidHN0IeE9wUtA="; }; - meta = { + meta = with stdenv.lib; { description = "A simple commandline torrent creator"; - homepage = "http://mathr.co.uk/blog/torrent.html"; - license = stdenv.lib.licenses.gpl3Plus; - platforms = stdenv.lib.platforms.all; + homepage = "https://mathr.co.uk/blog/torrent.html"; + license = licenses.gpl3Plus; + platforms = platforms.all; }; } diff --git a/pkgs/tools/misc/byobu/default.nix b/pkgs/tools/misc/byobu/default.nix index ad17c5edd6e..695ae54d876 100644 --- a/pkgs/tools/misc/byobu/default.nix +++ b/pkgs/tools/misc/byobu/default.nix @@ -1,5 +1,11 @@ -{ stdenv, fetchurl, python3, perl, textual-window-manager }: +{ stdenv, fetchurl, makeWrapper +, ncurses, python3, perl, textual-window-manager +, gettext, vim, bc, screen }: +let + inherit (stdenv) lib; + pythonEnv = python3.withPackages (ps: with ps; [ snack ]); +in stdenv.mkDerivation rec { version = "5.133"; name = "byobu-" + version; @@ -11,26 +17,59 @@ stdenv.mkDerivation rec { doCheck = true; - buildInputs = [ python3 perl ]; - propagatedBuildInputs = [ textual-window-manager ]; + buildInputs = [ perl makeWrapper gettext ]; + propagatedBuildInputs = [ textual-window-manager screen ]; - meta = { + postPatch = '' + substituteInPlace usr/bin/byobu-export.in \ + --replace "gettext" "${gettext}/bin/gettext" + substituteInPlace usr/lib/byobu/menu \ + --replace "gettext" "${gettext}/bin/gettext" + ''; + + postInstall = '' + # Byobu does not compile its po files for some reason + for po in po/*.po; do + lang=''${po#po/} + lang=''${lang%.po} + # Path where byobu looks for translations as observed in the source code and strace + mkdir -p $out/share/byobu/po/$lang/LC_MESSAGES/ + msgfmt $po -o $out/share/byobu/po/$lang/LC_MESSAGES/byobu.mo + done + + # Override the symlinks otherwise they mess with the wrapping + cp --remove-destination $out/bin/byobu $out/bin/byobu-screen + cp --remove-destination $out/bin/byobu $out/bin/byobu-tmux + + for i in $out/bin/byobu*; do + # We don't use the usual ".$package-wrapped" because arg0 within the shebang scripts + # points to the filename and byobu matches against this to know which backend + # to start with + file=".$(basename $i)" + mv $i $out/bin/$file + makeWrapper "$out/bin/$file" "$out/bin/$(basename $i)" --argv0 $(basename $i) \ + --set BYOBU_PATH ${lib.escapeShellArg (lib.makeBinPath [ vim bc ])} \ + --set BYOBU_PYTHON "${pythonEnv}/bin/python" + done + ''; + + meta = with stdenv.lib; { homepage = "https://launchpad.net/byobu/"; description = "Text-based window manager and terminal multiplexer"; longDescription = - ''Byobu is a GPLv3 open source text-based window manager and terminal multiplexer. - It was originally designed to provide elegant enhancements to the otherwise functional, - plain, practical GNU Screen, for the Ubuntu server distribution. - Byobu now includes an enhanced profiles, convenient keybindings, - configuration utilities, and toggle-able system status notifications for both - the GNU Screen window manager and the more modern Tmux terminal multiplexer, + ''Byobu is a GPLv3 open source text-based window manager and terminal multiplexer. + It was originally designed to provide elegant enhancements to the otherwise functional, + plain, practical GNU Screen, for the Ubuntu server distribution. + Byobu now includes an enhanced profiles, convenient keybindings, + configuration utilities, and toggle-able system status notifications for both + the GNU Screen window manager and the more modern Tmux terminal multiplexer, and works on most Linux, BSD, and Mac distributions. ''; - license = stdenv.lib.licenses.gpl3; + license = licenses.gpl3; - platforms = stdenv.lib.platforms.unix; - maintainers = [ stdenv.lib.maintainers.qknight ]; + platforms = platforms.unix; + maintainers = with maintainers; [ qknight berbiche ]; }; } diff --git a/pkgs/tools/misc/chafa/default.nix b/pkgs/tools/misc/chafa/default.nix index 9afdd93ad0a..5ed477c93a2 100644 --- a/pkgs/tools/misc/chafa/default.nix +++ b/pkgs/tools/misc/chafa/default.nix @@ -36,7 +36,7 @@ stdenv.mkDerivation rec { ]; meta = with stdenv.lib; { - description = "Terminal graphics for the 21st century."; + description = "Terminal graphics for the 21st century"; homepage = "https://hpjansson.org/chafa/"; license = licenses.lgpl3Plus; platforms = platforms.all; diff --git a/pkgs/tools/misc/chezmoi/default.nix b/pkgs/tools/misc/chezmoi/default.nix index d7b7646afec..448c0859c57 100644 --- a/pkgs/tools/misc/chezmoi/default.nix +++ b/pkgs/tools/misc/chezmoi/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "chezmoi"; - version = "1.8.5"; + version = "1.8.7"; src = fetchFromGitHub { owner = "twpayne"; repo = "chezmoi"; rev = "v${version}"; - sha256 = "16sv1kbd66rllnnl851y3x54wkl0p7g0qsblprvfr9715svk1835"; + sha256 = "1inmrcp01rxrjylkj9vzgw3q713q6jsqbnqllbzvp8q6kqfliayg"; }; - vendorSha256 = "1i9d672mzmb97s26n0v01m70g4viyl9pdk25haxr6ny4rab2wbi7"; + vendorSha256 = "0m946g6iw42q5ggki2j1lqdshpsxjmdsm1snnyzjzyy8gd88m4cx"; doCheck = false; diff --git a/pkgs/tools/misc/clex/default.nix b/pkgs/tools/misc/clex/default.nix index 7a6a78af59a..af21e971fe0 100644 --- a/pkgs/tools/misc/clex/default.nix +++ b/pkgs/tools/misc/clex/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { pname = "clex"; - version = "4.6.patch9"; + version = "4.6.patch10"; src = fetchurl { - sha256 = "1qj5yp8k90wag5sb3zrm2pn90qqx3zbrgf2gqpqpdqmlgffnv1jc"; + sha256 = "03niihqk57px7rm2c84qira5jm5vw8lj5s58dximk0w5gsis4fhw"; url = "${meta.homepage}/download/${pname}-${version}.tar.gz"; }; diff --git a/pkgs/tools/misc/cloud-utils/default.nix b/pkgs/tools/misc/cloud-utils/default.nix index d5c5b0ee783..afae939ef38 100644 --- a/pkgs/tools/misc/cloud-utils/default.nix +++ b/pkgs/tools/misc/cloud-utils/default.nix @@ -1,9 +1,18 @@ { stdenv, fetchurl, makeWrapper , gawk, gnused, utillinux, file , wget, python3, qemu-utils, euca2ools -, e2fsprogs, cdrkit }: +, e2fsprogs, cdrkit +, gptfdisk }: -stdenv.mkDerivation rec { +let + # according to https://packages.debian.org/sid/cloud-image-utils + https://packages.debian.org/sid/admin/cloud-guest-utils + guestDeps = [ + e2fsprogs gptfdisk gawk gnused utillinux + ]; + binDeps = guestDeps ++ [ + wget file qemu-utils cdrkit + ]; +in stdenv.mkDerivation rec { # NOTICE: if you bump this, make sure to run # $ nix-build nixos/release-combined.nix -A nixos.tests.ec2-nixops # growpart is needed in initrd in nixos/system/boot/grow-partition.nix @@ -17,15 +26,24 @@ stdenv.mkDerivation rec { buildInputs = [ python3 ]; installFlags = [ "LIBDIR=$(out)/lib" "BINDIR=$(out)/bin" "MANDIR=$(out)/man/man1" "DOCDIR=$(out)/doc" ]; - # according to https://packages.ubuntu.com/source/zesty/cloud-utils - binDeps = [ - wget e2fsprogs file gnused gawk utillinux qemu-utils euca2ools cdrkit - ]; + # $guest output contains all executables needed for cloud-init and $out the rest + $guest + # This is similar to debian's package split into cloud-image-utils and cloud-guest-utils + # The reason is to reduce the closure size + outputs = [ "out" "guest"]; postFixup = '' + moveToOutput bin/ec2metadata $guest + moveToOutput bin/growpart $guest + moveToOutput bin/vcs-run $guest + for i in $out/bin/*; do wrapProgram $i --prefix PATH : "${stdenv.lib.makeBinPath binDeps}:$out/bin" done + + for i in $guest/bin/*; do + wrapProgram $i --prefix PATH : "${stdenv.lib.makeBinPath guestDeps}:$guest/bin" + ln -s $i $out/bin + done ''; dontBuild = true; diff --git a/pkgs/tools/misc/dateutils/default.nix b/pkgs/tools/misc/dateutils/default.nix index f56cee49ecf..eae2241c3b4 100644 --- a/pkgs/tools/misc/dateutils/default.nix +++ b/pkgs/tools/misc/dateutils/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, autoreconfHook, tzdata }: +{ stdenv, fetchurl, autoreconfHook, tzdata, fetchpatch }: stdenv.mkDerivation rec { version = "0.4.7"; @@ -9,6 +9,13 @@ stdenv.mkDerivation rec { sha256 = "16jr9yjk8wgzfh22hr3z6mp4jm3fkacyibds4jj5xx5yymbm8wj9"; }; + patches = [ + (fetchpatch { + url = "https://bitbucket.org/hroptatyr/dateutils/commits/6813ed94534f2311fbe9164748919e39d60b0190/raw"; + sha256 = "1zs3iizb172ha56g03rr8kzd8zx6qypiqsc11jw758mliwxk5rgc"; + }) + ]; + nativeBuildInputs = [ autoreconfHook ]; buildInputs = [ tzdata ]; # needed for datezone enableParallelBuilding = true; diff --git a/pkgs/tools/misc/debianutils/default.nix b/pkgs/tools/misc/debianutils/default.nix index 141df333222..42deec9dc5d 100644 --- a/pkgs/tools/misc/debianutils/default.nix +++ b/pkgs/tools/misc/debianutils/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "debianutils"; - version = "4.11.1"; + version = "4.11.2"; src = fetchurl { url = "mirror://debian/pool/main/d/${pname}/${pname}_${version}.tar.xz"; - sha256 = "0g4qmzb2ff0rqszzpsal465hcslnpdl4nhghv59qvhamkkqnks4b"; + sha256 = "1pjh2s5f8qp8jaky2x08yvf125np0s48zb2z6f3h6x4vf20hws1v"; }; meta = with stdenv.lib; { diff --git a/pkgs/tools/misc/dijo/default.nix b/pkgs/tools/misc/dijo/default.nix index da504ad3ba3..2a3fa242699 100644 --- a/pkgs/tools/misc/dijo/default.nix +++ b/pkgs/tools/misc/dijo/default.nix @@ -13,7 +13,7 @@ rustPlatform.buildRustPackage { cargoSha256 = "0pm048xf8hkva8q8fjmhrdnk7h2im28ix7xy784xwkkdnilm4j7f"; meta = with lib; { - description = "Scriptable, curses-based, digital habit tracker."; + description = "Scriptable, curses-based, digital habit tracker"; homepage = "https://github.com/NerdyPepper/dijo"; license = licenses.mit; maintainers = with maintainers; [ infinisil ]; diff --git a/pkgs/tools/misc/direnv/default.nix b/pkgs/tools/misc/direnv/default.nix index e24d8611a43..f0c7aefc69a 100644 --- a/pkgs/tools/misc/direnv/default.nix +++ b/pkgs/tools/misc/direnv/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "direnv"; - version = "2.23.0"; + version = "2.23.1"; vendorSha256 = null; @@ -10,7 +10,7 @@ buildGoModule rec { owner = "direnv"; repo = "direnv"; rev = "v${version}"; - sha256 = "0m42mg4z04880dwl3iyppq2nda9v883jaxl8221d0xcpkjfm8hjm"; + sha256 = "02b27imda9pg65z5xw2q398p2281d5d46vgs3i9mrwcfsbpl5s6d"; }; # we have no bash at the moment for windows diff --git a/pkgs/tools/misc/dmg2img/default.nix b/pkgs/tools/misc/dmg2img/default.nix index 267983dd432..b132079a28e 100644 --- a/pkgs/tools/misc/dmg2img/default.nix +++ b/pkgs/tools/misc/dmg2img/default.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { meta = { platforms = stdenv.lib.platforms.unix; - description = "An Apple's compressed dmg to standard (hfsplus) image disk file convert tool."; + description = "An Apple's compressed dmg to standard (hfsplus) image disk file convert tool"; license = stdenv.lib.licenses.gpl3; }; } diff --git a/pkgs/tools/misc/dua/default.nix b/pkgs/tools/misc/dua/default.nix index b4cdde95b80..0fdd73ff552 100644 --- a/pkgs/tools/misc/dua/default.nix +++ b/pkgs/tools/misc/dua/default.nix @@ -2,13 +2,13 @@ rustPlatform.buildRustPackage rec { pname = "dua"; - version = "2.10.2"; + version = "2.10.3"; src = fetchFromGitHub { owner = "Byron"; repo = "dua-cli"; rev = "v${version}"; - sha256 = "0qsk4pa7xywd6fdwd5v4qwj334hyp3xjlayjzgyhks7a87hdwjgs"; + sha256 = "0zzansnbry73h7b2i4rz4rxc86xiw037n7f3va5gkz0pfdfa9mzi"; # Remove unicode file names which leads to different checksums on HFS+ # vs. other filesystems because of unicode normalisation. extraPostFetch = '' @@ -16,7 +16,7 @@ rustPlatform.buildRustPackage rec { ''; }; - cargoSha256 = "02wd4cw9hd8d96szwx8yxz6bll60f7w1z0xiz7k1h8h12mriaz4w"; + cargoSha256 = "0wky0b9sv4hsj56s001m5gh16r8ms421l7h7xjh117fs87aaj42w"; doCheck = false; diff --git a/pkgs/tools/misc/flameshot/default.nix b/pkgs/tools/misc/flameshot/default.nix index afca2e3007e..de7d56e5584 100644 --- a/pkgs/tools/misc/flameshot/default.nix +++ b/pkgs/tools/misc/flameshot/default.nix @@ -1,44 +1,26 @@ -{ mkDerivation, lib, fetchFromGitHub, qtbase, qmake, qttools, qtsvg }: +{ mkDerivation, lib, fetchFromGitHub, qtbase, cmake, qttools, qtsvg }: -# To use `flameshot gui`, you will also need to put flameshot in `services.dbus.packages` -# in configuration.nix so that the daemon gets launched properly: -# -# services.dbus.packages = [ pkgs.flameshot ]; -# environment.systemPackages = [ pkgs.flameshot ]; mkDerivation rec { pname = "flameshot"; - version = "0.6.0"; + version = "0.8.4"; src = fetchFromGitHub { - owner = "lupoDharkael"; + owner = "flameshot-org"; repo = "flameshot"; rev = "v${version}"; - sha256 = "193szslh55v44jzxzx5g9kxhl8p8di7vbcnxlid4acfidhnvgazm"; + sha256 = "0nr50ma8l612drl2br084kb3xac7jqkqr41b26d4p9y7ylwk05yq"; }; - nativeBuildInputs = [ qmake qttools qtsvg ]; + nativeBuildInputs = [ cmake qttools qtsvg ]; buildInputs = [ qtbase ]; - qmakeFlags = [ "PREFIX=${placeholder "out"}" ]; - - preConfigure = '' - # flameshot.pro assumes qmake is being run in a git checkout. - git() { echo ${version}; } - export -f git - ''; - - postFixup = '' - substituteInPlace $out/share/dbus-1/services/org.dharkael.Flameshot.service \ - --replace "/usr/local" "$out" - ''; - enableParallelBuilding = true; meta = with lib; { description = "Powerful yet simple to use screenshot software"; - homepage = "https://github.com/lupoDharkael/flameshot"; + homepage = "https://flameshot.js.org"; maintainers = [ maintainers.scode ]; - license = lib.licenses.gpl3; + license = lib.licenses.gpl3Plus; platforms = lib.platforms.linux; }; } diff --git a/pkgs/tools/misc/fselect/default.nix b/pkgs/tools/misc/fselect/default.nix index 312c7bbe3e9..bf0496037b5 100644 --- a/pkgs/tools/misc/fselect/default.nix +++ b/pkgs/tools/misc/fselect/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "fselect"; - version = "0.6.10"; + version = "0.7.1"; src = fetchFromGitHub { owner = "jhspetersson"; repo = "fselect"; rev = version; - sha256 = "17dz0qj2981plvzp72yisyrjnyz1sy3pqyvhx76ws2754vjgq4ra"; + sha256 = "1q7y5agsi6wjb1dnyvdhm4qmdhpv30cx5a8m1blks8is9z2bblz0"; }; - cargoSha256 = "19b05gx717xjg4arn4zgrqh7ckzgzx0ygg9gkfzsg7phz7f01626"; + cargoSha256 = "0r2zj0dvf6h4ph3b75z2rdlqwzkdjrjj2iad4dbf9nsr63giwd9n"; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/misc/fsmon/default.nix b/pkgs/tools/misc/fsmon/default.nix index 668fa463adb..a3e3eddcda9 100644 --- a/pkgs/tools/misc/fsmon/default.nix +++ b/pkgs/tools/misc/fsmon/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "fsmon"; - version = "1.8.1"; + version = "1.8.2"; src = fetchFromGitHub { owner = "nowsecure"; repo = "fsmon"; rev = version; - sha256 = "0i7irqs4100j0g19jh64p2plbwipl6p3ld6w4sscc7n8lwkxmj03"; + sha256 = "0y0gqb07girhz3r7gn9yrrysvhj5fapdafim0q8n7krk5y23hmh0"; }; installPhase = '' diff --git a/pkgs/tools/misc/fzf/default.nix b/pkgs/tools/misc/fzf/default.nix index 88000c0ba2c..6bd7f1ac3ed 100644 --- a/pkgs/tools/misc/fzf/default.nix +++ b/pkgs/tools/misc/fzf/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "fzf"; - version = "0.23.1"; + version = "0.24.1"; src = fetchFromGitHub { owner = "junegunn"; repo = pname; rev = version; - sha256 = "1x55y96i4b3gk9l2zlwb6ifsk8nxzfny3b73ly89g7kifwkb543k"; + sha256 = "03f9fdqicw1a2hcjiasya0dq72jvdz6fqw7dfig4kv5l14pwf3v9"; }; - vendorSha256 = "0bd4fk15i292377mv5w57gzxjp21f0rcf1py9gd6v99rx1pviq66"; + vendorSha256 = "0dd0qm1fxp3jnlrhfaas8fw87cj7rygaac35a9nk3xh2xsk7q35p"; outputs = [ "out" "man" ]; @@ -19,6 +19,10 @@ buildGoModule rec { buildInputs = [ ncurses ]; + buildFlagsArray = [ + "-ldflags=-s -w -X main.version=${version} -X main.revision=${src.rev}" + ]; + # The vim plugin expects a relative path to the binary; patch it to abspath. patchPhase = '' sed -i -e "s|expand(':h:h')|'$out'|" plugin/fzf.vim diff --git a/pkgs/tools/misc/gammy/default.nix b/pkgs/tools/misc/gammy/default.nix index a5da7995021..2fd99fd4a3a 100644 --- a/pkgs/tools/misc/gammy/default.nix +++ b/pkgs/tools/misc/gammy/default.nix @@ -2,7 +2,7 @@ let pname = "gammy"; - version = "0.9.58a"; + version = "0.9.59"; in stdenv.mkDerivation { @@ -12,7 +12,7 @@ stdenv.mkDerivation { owner = "Fushko"; repo = pname; rev = "v${version}"; - sha256 = "02kwfzh7h2dbsfb6b3qlsc7zga1hq21qvg45wf22vm03mahc28za"; + sha256 = "1iz41larqr6ss5kar1pds6zgcrch6ch34cr0ngd71gcaxal0rb72"; }; nativeBuildInputs = [ qmake wrapQtAppsHook ]; diff --git a/pkgs/tools/misc/gif-for-cli/default.nix b/pkgs/tools/misc/gif-for-cli/default.nix index fed22e51893..52d3e043ce9 100644 --- a/pkgs/tools/misc/gif-for-cli/default.nix +++ b/pkgs/tools/misc/gif-for-cli/default.nix @@ -1,19 +1,19 @@ -{ stdenv, fetchFromGitHub, python3Packages, ffmpeg_3, zlib, libjpeg }: +{ stdenv, fetchFromGitHub, python3Packages, ffmpeg, zlib, libjpeg }: python3Packages.buildPythonApplication { pname = "gif-for-cli"; - version = "unstable-2018-08-14"; + version = "1.1.2"; src = fetchFromGitHub { owner = "google"; repo = "gif-for-cli"; - rev = "9696f25fea2e38499b7c248a3151030c3c68bb00"; - sha256 = "1rj8wjfsabn27k1ds7a5fdqgf2r28zpz4lvhbzssjfj1yf0mfh7s"; + rev = "31f8aa2d617d6d6e941154f60e287c38dd9a74d5"; + sha256 = "Bl5o492BUAn1KsscnlMIXCzJuy7xWUsdnxIKZKaRM3M="; }; checkInputs = [ python3Packages.coverage ]; - buildInputs = [ ffmpeg_3 zlib libjpeg ]; - propagatedBuildInputs = with python3Packages; [ pillow requests x256 ]; + buildInputs = [ zlib libjpeg ]; + propagatedBuildInputs = with python3Packages; [ ffmpeg pillow requests x256 ]; meta = with stdenv.lib; { description = "Render gifs as ASCII art in your cli"; diff --git a/pkgs/tools/misc/go.rice/default.nix b/pkgs/tools/misc/go.rice/default.nix index 340b2d41c66..33e6975bb02 100644 --- a/pkgs/tools/misc/go.rice/default.nix +++ b/pkgs/tools/misc/go.rice/default.nix @@ -19,7 +19,7 @@ buildGoModule rec { meta = with stdenv.lib; { homepage = "https://github.com/GeertJohan/go.rice"; - description = "A Go package that makes working with resources such as html, js, css, images, templates very easy."; + description = "A Go package that makes working with resources such as html, js, css, images, templates very easy"; license = licenses.bsd2; maintainers = with maintainers; [ blaggacao ]; }; diff --git a/pkgs/tools/misc/goaccess/default.nix b/pkgs/tools/misc/goaccess/default.nix index 1906c9d5665..d14ef9d526a 100644 --- a/pkgs/tools/misc/goaccess/default.nix +++ b/pkgs/tools/misc/goaccess/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, pkgconfig, ncurses, glib, libmaxminddb }: +{ stdenv, fetchurl, pkgconfig, ncurses, glib, libmaxminddb, fetchpatch }: stdenv.mkDerivation rec { version = "1.4"; @@ -9,6 +9,13 @@ stdenv.mkDerivation rec { sha256 = "1gkpjg39f3afdwm9128jqjsfap07p8s027czzlnxfmi5hpzvkyz8"; }; + patches = [ + (fetchpatch { + url = "https://github.com/allinurl/goaccess/commit/514618cdd69453497fbf67913ccb37a0a0b07391.patch"; + sha256 = "11lp7mabfl6ibgzsd9nw10k2xvcm0hrimrwidl06r8dqn2jzjxf6"; + }) + ]; + configureFlags = [ "--enable-geoip=mmdb" "--enable-utf8" diff --git a/pkgs/tools/misc/gotify-cli/default.nix b/pkgs/tools/misc/gotify-cli/default.nix index cd60f0e98fa..36a7055f875 100644 --- a/pkgs/tools/misc/gotify-cli/default.nix +++ b/pkgs/tools/misc/gotify-cli/default.nix @@ -26,7 +26,7 @@ buildGoModule rec { meta = with lib; { license = licenses.mit; homepage = "https://github.com/gotify/cli"; - description = "A command line interface for pushing messages to gotify/server."; + description = "A command line interface for pushing messages to gotify/server"; maintainers = with maintainers; [ ma27 ]; }; } diff --git a/pkgs/tools/misc/hacksaw/default.nix b/pkgs/tools/misc/hacksaw/default.nix index bf0daa38ab3..a0e884e82d9 100644 --- a/pkgs/tools/misc/hacksaw/default.nix +++ b/pkgs/tools/misc/hacksaw/default.nix @@ -16,7 +16,7 @@ rustPlatform.buildRustPackage rec { cargoSha256 = "01draql3x71h7xl2xcc69dv7vpi3smnajhrvaihs5vij81pyfrzk"; meta = with lib; { - description = "Lightweight selection tool for usage in screenshot scripts etc."; + description = "Lightweight selection tool for usage in screenshot scripts etc"; homepage = "https://github.com/neXromancers/hacksaw"; license = with licenses; [ mpl20 ]; maintainers = with maintainers; [ TethysSvensson ]; diff --git a/pkgs/tools/misc/hdf4/default.nix b/pkgs/tools/misc/hdf4/default.nix index d5b8291d78e..5e5154111dc 100644 --- a/pkgs/tools/misc/hdf4/default.nix +++ b/pkgs/tools/misc/hdf4/default.nix @@ -9,30 +9,17 @@ stdenv.mkDerivation rec { pname = "hdf"; - version = "4.2.14"; + version = "4.2.15"; src = fetchurl { url = "https://support.hdfgroup.org/ftp/HDF/releases/HDF${version}/src/hdf-${version}.tar.bz2"; - sha256 = "0n29klrrbwan9307np0d9hr128dlpc4nnlf57a140080ll3jmp8l"; + sha256 = "04nbgfxyj5jg4d6sr28162cxbfwqgv0sa7vz1ayzvm8wbbpkbq5x"; }; - patches = let - # The Debian patch revision to fetch from; this may differ from our package - # version, but older patches should still apply. - patchRev = "4.2.13-4"; - getPatch = name: sha256: fetchpatch { - inherit sha256; - url = "https://salsa.debian.org/debian-gis-team/hdf4/raw/debian/${patchRev}/debian/patches/${name}"; - }; - - in [ - (getPatch "64bit" "1xqk9zpch4m6ipa0f3x2cm8rwaz4p0ppp1vqglvz18j6q91p8b5y") - (getPatch "hdfi.h" "01fr9csylnvk9jd9jn9y23bvxy192s07p32pr76mm3gwhgs9h7r4") - (getPatch "hdf-4.2.10-aarch64.patch" "1hl0xw5pd9xhpq49xpwgg7c4z6vv5p19x6qayixw0myvgwj1r4zn") - (getPatch "reproducible-builds.patch" "02j639w26xkxpxx3pdhbi18ywz8w3qmjpqjb83n47gq29y4g13hc") + nativeBuildInputs = [ + cmake ]; buildInputs = [ - cmake libjpeg szip zlib diff --git a/pkgs/tools/misc/hebcal/default.nix b/pkgs/tools/misc/hebcal/default.nix index 96c95848440..049a79fa757 100644 --- a/pkgs/tools/misc/hebcal/default.nix +++ b/pkgs/tools/misc/hebcal/default.nix @@ -1,14 +1,14 @@ { stdenv, fetchFromGitHub, autoreconfHook }: stdenv.mkDerivation rec { - version = "4.21"; + version = "4.22"; pname = "hebcal"; src = fetchFromGitHub { owner = "hebcal"; repo = "hebcal"; rev = "v${version}"; - sha256 = "0gqjhl5i0hvnpvsg6cfc2z5ckrs66h3jlrdgim62azn3hh5bday2"; + sha256 = "0bm29n51qi9q4vx4qsz3l9l1wvpvsk138zixfl5f5yz4kngzbx24"; }; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/tools/misc/hyperfine/default.nix b/pkgs/tools/misc/hyperfine/default.nix index ff9250a2bf6..cd581045cc5 100644 --- a/pkgs/tools/misc/hyperfine/default.nix +++ b/pkgs/tools/misc/hyperfine/default.nix @@ -1,19 +1,17 @@ -{ stdenv, fetchFromGitHub, rustPlatform, installShellFiles +{ stdenv, fetchCrate, rustPlatform, installShellFiles , Security }: rustPlatform.buildRustPackage rec { pname = "hyperfine"; - version = "1.10.0"; + version = "1.11.0"; - src = fetchFromGitHub { - owner = "sharkdp"; - repo = pname; - rev = "refs/tags/v${version}"; - sha256 = "0389lmyipmm4irrl39zw2748f2sdddfzwms4i4763xdykdvi8b57"; + src = fetchCrate { + inherit pname version; + sha256 = "0dla2jzwcxkdx3n4fqkkh6wirqs2f31lvqsw2pjf1jbnnif54mzh"; }; - cargoSha256 = "06scvp7x1yixdadarsm461hbc256spx4aqhmjjn72x7hxn22h9cg"; + cargoSha256 = "12qdllhydd29xh20l5gir6qpj4a1nkzp8ics344rcwj8wsj7g5zw"; nativeBuildInputs = [ installShellFiles ]; buildInputs = stdenv.lib.optional stdenv.isDarwin Security; diff --git a/pkgs/tools/misc/ical2org/default.nix b/pkgs/tools/misc/ical2org/default.nix index ffdb4e93f58..bcba352d6d3 100644 --- a/pkgs/tools/misc/ical2org/default.nix +++ b/pkgs/tools/misc/ical2org/default.nix @@ -17,7 +17,7 @@ buildGoPackage rec { goDeps = ./deps.nix; meta = with stdenv.lib; { - description = "Convert an iCal file to org agenda format, optionally deduplicating entries."; + description = "Convert an iCal file to org agenda format, optionally deduplicating entries"; homepage = "https://github.com/rjhorniii/ical2org"; license = licenses.gpl3; maintainers = with maintainers; [ swflint ]; diff --git a/pkgs/tools/misc/intermodal/default.nix b/pkgs/tools/misc/intermodal/default.nix index fe5d724e696..438758a7949 100644 --- a/pkgs/tools/misc/intermodal/default.nix +++ b/pkgs/tools/misc/intermodal/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "intermodal"; - version = "0.1.11"; + version = "0.1.12"; src = fetchFromGitHub { owner = "casey"; repo = pname; rev = "v${version}"; - sha256 = "1wqf227ljfys16jfbxi6mlkgdczgqrh15ixl9vi6higlxfi2wsj2"; + sha256 = "0mn0wm3bihn7ffqk0p79mb1hik54dbhc9diq1wh9ylpld2iqmz68"; }; - cargoSha256 = "0lx8y1y5mf8ga7iz74dnfyf2b9jx15wishw0khfxknmh96h2y99h"; + cargoSha256 = "0kf5afarfwcl47b40pwnslfvxmxllmb995vc5ls2lpz4cx0jwahn"; # include_hidden test tries to use `chflags` on darwin checkFlagsArray = stdenv.lib.optionals stdenv.isDarwin [ "--skip=subcommand::torrent::create::tests::include_hidden" ]; diff --git a/pkgs/tools/misc/kargo/default.nix b/pkgs/tools/misc/kargo/default.nix index eb9805b22d8..ac40eb762d5 100644 --- a/pkgs/tools/misc/kargo/default.nix +++ b/pkgs/tools/misc/kargo/default.nix @@ -30,7 +30,7 @@ buildPythonApplication rec { meta = with stdenv.lib; { homepage = "https://github.com/kubespray/kargo-cli"; - description = "A tool helps to deploy a kubernetes cluster with Ansible."; + description = "A tool helps to deploy a kubernetes cluster with Ansible"; platforms = platforms.linux; license = licenses.gpl3; maintainers = with maintainers; [ ]; diff --git a/pkgs/tools/misc/kepubify/default.nix b/pkgs/tools/misc/kepubify/default.nix index 7446b061e0d..546dcb112a8 100644 --- a/pkgs/tools/misc/kepubify/default.nix +++ b/pkgs/tools/misc/kepubify/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kepubify"; - version = "3.1.5"; + version = "3.1.6"; src = fetchFromGitHub { owner = "pgaskin"; repo = pname; rev = "v${version}"; - sha256 = "047pwn7yzm456cs175vgqk2pd6i3iqn8zxp38px3ah15vym2yjnp"; + sha256 = "129izxgvhcybipfgcwzzwsir9zhi7axxadnw822zy5rk2ky4zjpk"; }; - vendorSha256 = "0jzx5midawvzims9ghh8fbslvwcdczvlpf0k6a9q0bdf4wlp2z5n"; + vendorSha256 = "0vwzm1c4kada7mqdkr444gj8c2vkvz7av9wkpgdpjrq0v2h0hpcc"; buildFlagsArray = [ "-ldflags=-s -w -X main.version=${version}" ]; diff --git a/pkgs/tools/misc/lice/default.nix b/pkgs/tools/misc/lice/default.nix index f4653f81f3a..2d96819e877 100644 --- a/pkgs/tools/misc/lice/default.nix +++ b/pkgs/tools/misc/lice/default.nix @@ -14,7 +14,7 @@ python3Packages.buildPythonPackage rec { }; meta = with stdenv.lib; { - description = "Print license based on selection and user options."; + description = "Print license based on selection and user options"; homepage = "https://github.com/licenses/lice"; license = licenses.bsd3; maintainers = with maintainers; [ swflint ]; diff --git a/pkgs/tools/misc/logstash/6.x.nix b/pkgs/tools/misc/logstash/6.x.nix index ec8106e922a..52e74e5babf 100644 --- a/pkgs/tools/misc/logstash/6.x.nix +++ b/pkgs/tools/misc/logstash/6.x.nix @@ -44,7 +44,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "Logstash is a data pipeline that helps you process logs and other event data from a variety of systems"; + description = "A data pipeline that helps you process logs and other event data from a variety of systems"; homepage = "https://www.elastic.co/products/logstash"; license = if enableUnfree then licenses.elastic else licenses.asl20; platforms = platforms.unix; diff --git a/pkgs/tools/misc/logtop/default.nix b/pkgs/tools/misc/logtop/default.nix index 76c287fe391..a7b2f6282fd 100644 --- a/pkgs/tools/misc/logtop/default.nix +++ b/pkgs/tools/misc/logtop/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation { ''; meta = with stdenv.lib; { - description = "Displays a real-time count of strings received from stdin."; + description = "Displays a real-time count of strings received from stdin"; longDescription = '' logtop displays a real-time count of strings received from stdin. It can be useful in some cases, like getting the IP flooding your diff --git a/pkgs/tools/misc/lokalise2-cli/default.nix b/pkgs/tools/misc/lokalise2-cli/default.nix index 3705d7df6f0..19dafb4cef1 100644 --- a/pkgs/tools/misc/lokalise2-cli/default.nix +++ b/pkgs/tools/misc/lokalise2-cli/default.nix @@ -20,7 +20,7 @@ buildGoModule rec { ''; meta = with stdenv.lib; { - description = "Translation platform for developers. Upload language files, translate, integrate via API."; + description = "Translation platform for developers. Upload language files, translate, integrate via API"; homepage = "https://lokalise.com"; license = licenses.bsd3; maintainers = with maintainers; [ timstott ]; diff --git a/pkgs/tools/misc/lsd/default.nix b/pkgs/tools/misc/lsd/default.nix index db8c40b6ffe..e38da518094 100644 --- a/pkgs/tools/misc/lsd/default.nix +++ b/pkgs/tools/misc/lsd/default.nix @@ -22,6 +22,10 @@ rustPlatform.buildRustPackage rec { installShellCompletion $releaseDir/build/lsd-*/out/{_lsd,lsd.{bash,fish}} ''; + checkFlags = stdenv.lib.optionals stdenv.isDarwin [ + "--skip meta::filetype::test::test_socket_type" + ]; + meta = with stdenv.lib; { homepage = "https://github.com/Peltoche/lsd"; description = "The next gen ls command"; diff --git a/pkgs/tools/misc/miniserve/default.nix b/pkgs/tools/misc/miniserve/default.nix index 71d20c015d0..a0fe350a273 100644 --- a/pkgs/tools/misc/miniserve/default.nix +++ b/pkgs/tools/misc/miniserve/default.nix @@ -24,11 +24,6 @@ rustPlatform.buildRustPackage rec { nativeBuildInputs = [ pkg-config zlib ]; buildInputs = stdenv.lib.optionals stdenv.isDarwin [ Security ]; - # Remove after https://github.com/NixOS/nixpkgs/pull/97000 lands into master - preConfigure = stdenv.lib.optionalString stdenv.isDarwin '' - unset SDKROOT - ''; - meta = with stdenv.lib; { description = "For when you really just want to serve some files over HTTP right now!"; homepage = "https://github.com/svenstaro/miniserve"; diff --git a/pkgs/tools/misc/mongodb-compass/default.nix b/pkgs/tools/misc/mongodb-compass/default.nix index ec6be6eba28..93fca738dc4 100644 --- a/pkgs/tools/misc/mongodb-compass/default.nix +++ b/pkgs/tools/misc/mongodb-compass/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl, dpkg , alsaLib, at-spi2-atk, at-spi2-core, atk, cairo, cups, curl, dbus, expat, fontconfig, freetype, glib -, gnome2, gnome3, libnotify, libsecret, libuuid, libxcb, nspr, nss, systemd, xorg, wrapGAppsHook }: +, gnome2, gdk-pixbuf, gtk3, pango, libnotify, libsecret, libuuid, libxcb, nspr, nss, systemd, xorg, wrapGAppsHook }: let version = "1.22.1"; @@ -19,9 +19,9 @@ let freetype glib gnome2.GConf - gnome2.gdk_pixbuf - gnome3.gtk - gnome2.pango + gdk-pixbuf + gtk3 + pango libnotify libsecret libuuid @@ -60,7 +60,7 @@ in stdenv.mkDerivation { inherit src; - buildInputs = [ dpkg wrapGAppsHook gnome3.gtk ]; + buildInputs = [ dpkg wrapGAppsHook gtk3 ]; dontUnpack = true; buildCommand = '' diff --git a/pkgs/tools/misc/noti/default.nix b/pkgs/tools/misc/noti/default.nix index 883e353b0b0..9bfc7e259d5 100644 --- a/pkgs/tools/misc/noti/default.nix +++ b/pkgs/tools/misc/noti/default.nix @@ -26,7 +26,7 @@ buildGoPackage rec { ''; meta = with lib; { - description = "Monitor a process and trigger a notification."; + description = "Monitor a process and trigger a notification"; longDescription = '' Monitor a process and trigger a notification. diff --git a/pkgs/tools/misc/nyancat/default.nix b/pkgs/tools/misc/nyancat/default.nix index a7b06614785..d4092c237df 100644 --- a/pkgs/tools/misc/nyancat/default.nix +++ b/pkgs/tools/misc/nyancat/default.nix @@ -23,7 +23,7 @@ stdenv.mkDerivation rec { ''; meta = with stdenv.lib; { - description = "Nyancat in your terminal, rendered through ANSI escape sequences."; + description = "Nyancat in your terminal, rendered through ANSI escape sequences"; homepage = "https://nyancat.dakko.us"; license = licenses.ncsa; maintainers = with maintainers; [ midchildan ]; diff --git a/pkgs/tools/misc/onefetch/default.nix b/pkgs/tools/misc/onefetch/default.nix index 518ce223ed0..426c5f21203 100644 --- a/pkgs/tools/misc/onefetch/default.nix +++ b/pkgs/tools/misc/onefetch/default.nix @@ -3,16 +3,16 @@ rustPlatform.buildRustPackage rec { pname = "onefetch"; - version = "2.4.0"; + version = "2.5.0"; src = fetchFromGitHub { owner = "o2sh"; repo = pname; rev = "v${version}"; - sha256 = "sha256-3bERQ480SuvrjyqlBd9wnE4iIJAbN8HODUj0X+Uxrvs="; + sha256 = "sha256-F1NbzcMoct0mjWKY2itz4cBqVToY7HpoaRzk3l683fY="; }; - cargoSha256 = "sha256-Bq2ytwbdhYeXIUM4tYSfUamhckraH5w34sAQ96ayJxI="; + cargoSha256 = "sha256-eBY+34VEPEAv5bqerxR3i7cJrVb1GtvmWyrM7uuef2E="; buildInputs = with stdenv; lib.optionals isDarwin [ CoreFoundation libiconv libresolv Security ]; diff --git a/pkgs/tools/misc/ostree/default.nix b/pkgs/tools/misc/ostree/default.nix index fd1bfc7f8c7..56262d8171e 100644 --- a/pkgs/tools/misc/ostree/default.nix +++ b/pkgs/tools/misc/ostree/default.nix @@ -39,13 +39,13 @@ let ])); in stdenv.mkDerivation rec { pname = "ostree"; - version = "2020.5"; + version = "2020.7"; outputs = [ "out" "dev" "man" "installedTests" ]; src = fetchurl { url = "https://github.com/ostreedev/ostree/releases/download/v${version}/libostree-${version}.tar.xz"; - sha256 = "1k92177hjalbdpmg45ymwwrni68vh9rs5x9zvy5fzl9lng12fgpb"; + sha256 = "0clriq2ypz1fycd6mpjyrhzid44svzpzw0amnank593h69b216ax"; }; patches = [ diff --git a/pkgs/tools/misc/pandoc-plantuml-filter/default.nix b/pkgs/tools/misc/pandoc-plantuml-filter/default.nix index 61a0f14d597..cdf0ab862df 100644 --- a/pkgs/tools/misc/pandoc-plantuml-filter/default.nix +++ b/pkgs/tools/misc/pandoc-plantuml-filter/default.nix @@ -19,7 +19,7 @@ buildPythonApplication rec { meta = with lib; { homepage = "https://github.com/timofurrer/pandoc-plantuml-filter"; - description = "Pandoc filter which converts PlantUML code blocks to PlantUML images."; + description = "Pandoc filter which converts PlantUML code blocks to PlantUML images"; license = licenses.mit; maintainers = with maintainers; [ cmcdragonkai ]; }; diff --git a/pkgs/tools/misc/parallel/default.nix b/pkgs/tools/misc/parallel/default.nix index e99f2aa12d5..2f3ca5afd5a 100644 --- a/pkgs/tools/misc/parallel/default.nix +++ b/pkgs/tools/misc/parallel/default.nix @@ -1,4 +1,4 @@ -{ fetchurl, stdenv, perl, makeWrapper, procps }: +{ fetchurl, stdenv, perl, makeWrapper, procps, coreutils }: stdenv.mkDerivation rec { name = "parallel-20200822"; @@ -8,6 +8,14 @@ stdenv.mkDerivation rec { sha256 = "02dy46g6f05p7s2qs8h6yg20p1zl3flxxf77n5jw74l3h1m24m4n"; }; + patches = [ + ./fix-max-line-length-allowed.diff + ]; + + postPatch = '' + substituteInPlace src/parallel --subst-var-by coreutils ${coreutils} + ''; + outputs = [ "out" "man" ]; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/misc/parallel/fix-max-line-length-allowed.diff b/pkgs/tools/misc/parallel/fix-max-line-length-allowed.diff new file mode 100644 index 00000000000..c6d501ecb22 --- /dev/null +++ b/pkgs/tools/misc/parallel/fix-max-line-length-allowed.diff @@ -0,0 +1,17 @@ +Correct path to coreutils echo to fix parallel --max-line-length-allowed. + +Author: Bjørn Forsman + +diff --git a/src/parallel b/src/parallel +index a047fd94..9fc5f671 100755 +--- a/src/parallel ++++ b/src/parallel +@@ -11580,7 +11580,7 @@ sub is_acceptable_command_line_length($$) { + $len += length $Global::parallel_env; + } + # Force using non-built-in command +- ::qqx("/bin/echo ".${string}x(($len-length "/bin/echo ")/length $string)); ++ ::qqx("@coreutils@/bin/echo ".${string}x(($len-length "@coreutils@/bin/echo ")/length $string)); + ::debug("init", "$len=$? "); + return not $?; + } diff --git a/pkgs/tools/misc/pdd/default.nix b/pkgs/tools/misc/pdd/default.nix index f94d2cc2737..37f9e2f4ce5 100644 --- a/pkgs/tools/misc/pdd/default.nix +++ b/pkgs/tools/misc/pdd/default.nix @@ -2,13 +2,13 @@ buildPythonApplication rec { pname = "pdd"; - version = "1.4"; + version = "1.5"; src = fetchFromGitHub { owner = "jarun"; repo = "pdd"; rev = "v${version}"; - sha256 = "1cirb8mmxxadks7az6a3a4sp8djv45cwa9dx0zrarzfmw0x7xb9g"; + sha256 = "1ivzcbm888aibiihw03idp38qbl8mywj1lc1x0q787v0pzqfb4ss"; }; format = "other"; diff --git a/pkgs/tools/misc/plantuml/default.nix b/pkgs/tools/misc/plantuml/default.nix index 8689e6467fb..12b7dda0df1 100644 --- a/pkgs/tools/misc/plantuml/default.nix +++ b/pkgs/tools/misc/plantuml/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, makeWrapper, jre, graphviz }: stdenv.mkDerivation rec { - version = "1.2020.16"; + version = "1.2020.19"; pname = "plantuml"; src = fetchurl { url = "mirror://sourceforge/project/plantuml/${version}/plantuml.${version}.jar"; - sha256 = "0k9dligb0b2kc8rl9k5wp9sh8z1kb8g97v5pfiiwa321lp8y6wpp"; + sha256 = "0lb0gxww7fgbwazfj1z533crryvcgb5vdprpy8j9p6h6x929qaqi"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/misc/powerline-go/default.nix b/pkgs/tools/misc/powerline-go/default.nix index 9ec7c0a32bf..16734e3dd3a 100644 --- a/pkgs/tools/misc/powerline-go/default.nix +++ b/pkgs/tools/misc/powerline-go/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "powerline-go"; - version = "1.17.0"; + version = "1.18.0"; src = fetchFromGitHub { owner = "justjanne"; repo = pname; rev = "v${version}"; - sha256 = "135j18d53nhg6adjd2hax067c5f1py9fyprzfcr3plsxnaki2hrx"; + sha256 = "0dni842xzc8r6wbdfax25940jvxp69zk8xklczkjmyxqawvsxnjh"; }; vendorSha256 = "0dkgp9vlb76la0j439w0rb548qg5v8648zryk3rqgfhd4qywlk11"; diff --git a/pkgs/tools/misc/radeon-profile/default.nix b/pkgs/tools/misc/radeon-profile/default.nix index 852c46b6d00..acadda5c549 100644 --- a/pkgs/tools/misc/radeon-profile/default.nix +++ b/pkgs/tools/misc/radeon-profile/default.nix @@ -5,7 +5,7 @@ mkDerivation rec { pname = "radeon-profile"; - version = "20190903"; + version = "20200824"; nativeBuildInputs = [ qmake ]; buildInputs = [ qtbase qtcharts libXrandr libdrm ]; @@ -14,7 +14,7 @@ mkDerivation rec { owner = "marazmista"; repo = "radeon-profile"; rev = version; - sha256 = "0ax5417q03xjwi3pn7yyjdb90ssaygdprfgb1pz9nkyk6773ckx5"; + sha256 = "0z6a9w79s5wiy8cvwcdp5wmgf6702d0wzw95f6176yhp4cwy4cq2"; }) + "/radeon-profile"; preConfigure = '' diff --git a/pkgs/tools/misc/rpcsvc-proto/default.nix b/pkgs/tools/misc/rpcsvc-proto/default.nix new file mode 100644 index 00000000000..12885172080 --- /dev/null +++ b/pkgs/tools/misc/rpcsvc-proto/default.nix @@ -0,0 +1,35 @@ +{ stdenv, lib, fetchFromGitHub, autoreconfHook, buildPackages }: + +stdenv.mkDerivation rec { + pname = "rpcsvc-proto"; + version = "1.4.2"; + + src = fetchFromGitHub { + owner = "thkukuk"; + repo = "${pname}"; + rev = "v${version}"; + sha256 = "006l1f824r9bcbwn1s1vbs33cdwhs66jn6v97yas597y884y40z9"; + }; + + outputs = [ "out" "man" ]; + + depsBuildBuild = [ buildPackages.stdenv.cc ]; + nativeBuildInputs = [ autoreconfHook ]; + + postPatch = lib.optionalString (stdenv.hostPlatform != stdenv.buildPlatform) '' + substituteInPlace rpcsvc/Makefile.am \ + --replace '$(top_builddir)/rpcgen/rpcgen' '${buildPackages.rpcsvc-proto}/bin/rpcgen' + ''; + + meta = with stdenv.lib; { + homepage = "https://github.com/thkukuk/rpcsvc-proto"; + description = "This package contains rpcsvc proto.x files from glibc, which are missing in libtirpc"; + longDescription = '' + The RPC-API has been removed from glibc. The 2.32-release-notes + (https://sourceware.org/pipermail/libc-announce/2020/000029.html) recommend to use + `libtirpc` and this package instead. + ''; + license = licenses.mit; + maintainers = with maintainers; [ ma27 ]; + }; +} diff --git a/pkgs/tools/misc/shallot/default.nix b/pkgs/tools/misc/shallot/default.nix index e8ab6168541..84e241b7a2c 100644 --- a/pkgs/tools/misc/shallot/default.nix +++ b/pkgs/tools/misc/shallot/default.nix @@ -36,7 +36,7 @@ stdenv.mkDerivation rec { ''; meta = { - description = "Shallot allows you to create customized .onion addresses for your hidden service"; + description = "Allows you to create customized .onion addresses for your hidden service"; license = stdenv.lib.licenses.mit; homepage = "https://github.com/katmagic/Shallot"; diff --git a/pkgs/tools/misc/shunit2/default.nix b/pkgs/tools/misc/shunit2/default.nix index 186235be442..e08a5b576d3 100644 --- a/pkgs/tools/misc/shunit2/default.nix +++ b/pkgs/tools/misc/shunit2/default.nix @@ -24,7 +24,7 @@ stdenv.mkDerivation { meta = with stdenv.lib; { homepage = "https://github.com/kward/shunit2"; - description = "A xUnit based unit test framework for Bourne based shell scripts."; + description = "A xUnit based unit test framework for Bourne based shell scripts"; maintainers = with maintainers; [ cdepillabout utdemir ]; license = licenses.asl20; platforms = platforms.unix; diff --git a/pkgs/tools/misc/silicon/default.nix b/pkgs/tools/misc/silicon/default.nix index 99de1c3d175..7c3d6a4f70a 100644 --- a/pkgs/tools/misc/silicon/default.nix +++ b/pkgs/tools/misc/silicon/default.nix @@ -37,7 +37,7 @@ rustPlatform.buildRustPackage rec { LIBCLANG_PATH = "${llvmPackages.libclang}/lib"; meta = with lib; { - description = "Create beautiful image of your source code."; + description = "Create beautiful image of your source code"; homepage = "https://github.com/Aloxaf/silicon"; license = with licenses; [ mit /* or */ asl20 ]; maintainers = with maintainers; [ evanjs ]; diff --git a/pkgs/tools/misc/skim/default.nix b/pkgs/tools/misc/skim/default.nix index e89cf366136..1c8dc40de1b 100644 --- a/pkgs/tools/misc/skim/default.nix +++ b/pkgs/tools/misc/skim/default.nix @@ -1,19 +1,17 @@ -{ stdenv, fetchFromGitHub, rustPlatform }: +{ stdenv, fetchCrate, rustPlatform }: rustPlatform.buildRustPackage rec { pname = "skim"; - version = "0.8.2"; + version = "0.9.1"; - src = fetchFromGitHub { - owner = "lotabout"; - repo = pname; - rev = "v${version}"; - sha256 = "0paxrf03rqzahbpr4gnsj62vl09vcxvw248n9wzhjq14dqlwcr9w"; + src = fetchCrate { + inherit pname version; + sha256 = "1r8zf56kb9rhh8nlh8w684srr8jfhndf8742x8byw374my9xn8pb"; }; outputs = [ "out" "vim" ]; - cargoSha256 = "0rxxdad60fpwkb4wx5407ihd89wqpf2ldcnp7nsx17xh4brp1l9r"; + cargoSha256 = "0wjlkyngrc03a92fwmavgj90h0kakww38bfc1wapn2my7p3b6nc1"; postPatch = '' sed -i -e "s|expand(':h:h')|'$out'|" plugin/skim.vim diff --git a/pkgs/tools/misc/slurp/default.nix b/pkgs/tools/misc/slurp/default.nix index dbec2324674..bdbea7367b8 100644 --- a/pkgs/tools/misc/slurp/default.nix +++ b/pkgs/tools/misc/slurp/default.nix @@ -1,27 +1,28 @@ -{ stdenv, fetchFromGitHub, meson, ninja, pkgconfig -, cairo, wayland, wayland-protocols +{ stdenv, fetchFromGitHub, meson, ninja, pkg-config +, cairo, libxkbcommon, wayland, wayland-protocols , buildDocs ? true, scdoc }: stdenv.mkDerivation rec { pname = "slurp"; - version = "1.2.0"; + version = "1.3.0"; src = fetchFromGitHub { owner = "emersion"; repo = "slurp"; rev = "v${version}"; - sha256 = "0580m6kaiilgsrcj608r837r37sl6a25y7w21p7d6ij20fs3gvg1"; + sha256 = "191yjn909dax8z66ks58wjadrycpbwryirkfjcy99dhq7dijg9fh"; }; nativeBuildInputs = [ meson ninja - pkgconfig + pkg-config ] ++ stdenv.lib.optional buildDocs scdoc; buildInputs = [ cairo + libxkbcommon wayland wayland-protocols ]; diff --git a/pkgs/tools/misc/somafm-cli/default.nix b/pkgs/tools/misc/somafm-cli/default.nix index 312b402ae66..3ce3f62a9e2 100644 --- a/pkgs/tools/misc/somafm-cli/default.nix +++ b/pkgs/tools/misc/somafm-cli/default.nix @@ -28,6 +28,7 @@ stdenv.mkDerivation rec { description = "Listen to SomaFM in your terminal via pure bash"; homepage = "https://github.com/rockymadden/somafm-cli"; license = licenses.mit; + platforms = platforms.all; maintainers = with maintainers; [ SuperSandro2000 ]; }; } diff --git a/pkgs/tools/misc/starship/default.nix b/pkgs/tools/misc/starship/default.nix index 3cc56d87c62..d9eaa3f3272 100644 --- a/pkgs/tools/misc/starship/default.nix +++ b/pkgs/tools/misc/starship/default.nix @@ -10,13 +10,13 @@ rustPlatform.buildRustPackage rec { pname = "starship"; - version = "0.45.2"; + version = "0.46.2"; src = fetchFromGitHub { owner = "starship"; repo = pname; rev = "v${version}"; - sha256 = "0kxmgx4pnayp3jf6cgmka05x3aymxr79rim5nff6k3cg5zaqrz59"; + sha256 = "092nqxl3vdk8k589bv3g05c598k77f4wsxcgymfb1h1fc0lfzqs4"; }; nativeBuildInputs = [ installShellFiles ] ++ stdenv.lib.optionals stdenv.isLinux [ pkg-config ]; @@ -31,14 +31,17 @@ rustPlatform.buildRustPackage rec { done ''; - cargoSha256 = "0x9a322anwrgpxfqrvqb1ikavp8qffa93wdvj5kln1d2rgmxr2sy"; + cargoSha256 = "1smz7084ppz79p8migpy0cqp6azf7sixv9ga65l2f3zfna7kbk78"; checkFlags = [ "--skip=directory_in_home" - "--skip=fish_directory_in_home" "--skip=home_directory" - "--skip=truncated_directory_in_home" "--skip=directory_in_root" + "--skip=truncation_symbol_not_truncated_home" + "--skip=truncation_symbol_truncated_home" + "--skip=folder_with_glide_yaml" + "--skip=shows_multiple_tfms" + "--skip=shows_pinned_in_project_below_root_with_global_json" ]; meta = with stdenv.lib; { diff --git a/pkgs/tools/misc/statserial/default.nix b/pkgs/tools/misc/statserial/default.nix index 66ae899b9c5..448323f4346 100644 --- a/pkgs/tools/misc/statserial/default.nix +++ b/pkgs/tools/misc/statserial/default.nix @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = "https://sites.google.com/site/tranter/software"; - description = "Display serial port modem status lines."; + description = "Display serial port modem status lines"; license = licenses.gpl2; longDescription = diff --git a/pkgs/tools/misc/svtplay-dl/default.nix b/pkgs/tools/misc/svtplay-dl/default.nix index 0c7e0141f93..a3e973be544 100644 --- a/pkgs/tools/misc/svtplay-dl/default.nix +++ b/pkgs/tools/misc/svtplay-dl/default.nix @@ -8,13 +8,13 @@ let in stdenv.mkDerivation rec { pname = "svtplay-dl"; - version = "2.6"; + version = "2.7"; src = fetchFromGitHub { owner = "spaam"; repo = "svtplay-dl"; rev = version; - sha256 = "1d969ig4w6irx5822crhpab2f53svpiyf1vfx87irapy309dqy2y"; + sha256 = "0gcw7hwbr9jniwvqix37vvd2fiplsz70qab9w45d21i8jrfnhxb5"; }; pythonPaths = [ pycrypto pyyaml requests ]; diff --git a/pkgs/tools/misc/sweep-visualizer/default.nix b/pkgs/tools/misc/sweep-visualizer/default.nix index 21e6f49df1f..fdd3c5f628d 100644 --- a/pkgs/tools/misc/sweep-visualizer/default.nix +++ b/pkgs/tools/misc/sweep-visualizer/default.nix @@ -1,6 +1,6 @@ { stdenv, lib, makeWrapper, fetchurl, alsaLib, atk, cairo, cups, dbus, expat, fontconfig, freetype, gdk-pixbuf, glib, - gnome2, gtk2-x11, nspr, nss, + gnome2, pango, gtk2-x11, nspr, nss, libX11, libxcb, libXcomposite, libXcursor, libXdamage, libXext, libXfixes, libXi, libXrandr, libXrender, libXScrnSaver, libXtst, libudev0-shim @@ -33,7 +33,7 @@ preFixup = let libPath = lib.makeLibraryPath [ alsaLib atk cairo cups.lib dbus.lib expat fontconfig.lib freetype - gdk-pixbuf glib gnome2.GConf gnome2.pango gtk2-x11 nspr nss stdenv.cc.cc.lib + gdk-pixbuf glib gnome2.GConf pango gtk2-x11 nspr nss stdenv.cc.cc.lib libX11 libxcb libXcomposite libXcursor libXdamage libXext libXfixes libXi libXrandr libXrender libXScrnSaver libXtst ]; diff --git a/pkgs/tools/misc/td/default.nix b/pkgs/tools/misc/td/default.nix index f4b120d1bc1..bca5bd601d4 100644 --- a/pkgs/tools/misc/td/default.nix +++ b/pkgs/tools/misc/td/default.nix @@ -8,7 +8,7 @@ bundlerApp { passthru.updateScript = bundlerUpdateScript "td"; meta = with lib; { - description = "CLI to manage data on Treasure Data, the Hadoop-based cloud data warehousing."; + description = "CLI to manage data on Treasure Data, the Hadoop-based cloud data warehousing"; homepage = "https://github.com/treasure-data/td"; license = licenses.asl20; maintainers = with maintainers; [ groodt nicknovitski ]; diff --git a/pkgs/tools/misc/thefuck/default.nix b/pkgs/tools/misc/thefuck/default.nix index b2d31a62911..d923a3f4491 100644 --- a/pkgs/tools/misc/thefuck/default.nix +++ b/pkgs/tools/misc/thefuck/default.nix @@ -30,7 +30,7 @@ buildPythonApplication rec { meta = with stdenv.lib; { homepage = "https://github.com/nvbn/thefuck"; - description = "Magnificent app which corrects your previous console command."; + description = "Magnificent app which corrects your previous console command"; license = licenses.mit; maintainers = with maintainers; [ ma27 ]; }; diff --git a/pkgs/tools/misc/tlp/default.nix b/pkgs/tools/misc/tlp/default.nix index 5a467dd626d..a32e941ad84 100644 --- a/pkgs/tools/misc/tlp/default.nix +++ b/pkgs/tools/misc/tlp/default.nix @@ -87,8 +87,8 @@ smartmontools systemd utillinux - x86_energy_perf_policy ] ++ lib.optional enableRDW networkmanager + ++ lib.optional (lib.any (lib.meta.platformMatch stdenv.hostPlatform) x86_energy_perf_policy.meta.platforms) x86_energy_perf_policy ); in '' diff --git a/pkgs/tools/misc/tmux/default.nix b/pkgs/tools/misc/tmux/default.nix index 12ea456b9f7..7fa33ed82f2 100644 --- a/pkgs/tools/misc/tmux/default.nix +++ b/pkgs/tools/misc/tmux/default.nix @@ -13,15 +13,15 @@ let bashCompletion = fetchFromGitHub { owner = "imomaliev"; repo = "tmux-bash-completion"; - rev = "fcda450d452f07d36d2f9f27e7e863ba5241200d"; - sha256 = "092jpkhggjqspmknw7h3icm0154rg21mkhbc71j5bxfmfjdxmya8"; + rev = "f5d53239f7658f8e8fbaf02535cc369009c436d6"; + sha256 = "0sq2g3w0h3mkfa6qwqdw93chb5f1hgkz5vdl8yw8mxwdqwhsdprr"; }; in stdenv.mkDerivation rec { pname = "tmux"; - version = "3.1b"; + version = "3.1c"; outputs = [ "out" "man" ]; @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { owner = "tmux"; repo = "tmux"; rev = version; - sha256 = "0jvyq4r691bn0wsr8i6c0q0lzss25vm9nx8sv3fhw9cs63ncq04y"; + sha256 = "1fqgpzfas85dn0sxlvvg6rj488jwgnxs8d3gqcm8lgs211m9qhcf"; }; nativeBuildInputs = [ @@ -55,7 +55,7 @@ stdenv.mkDerivation rec { ''; meta = { - homepage = "http://tmux.github.io/"; + homepage = "https://tmux.github.io/"; description = "Terminal multiplexer"; longDescription = diff --git a/pkgs/tools/misc/tmuxp/default.nix b/pkgs/tools/misc/tmuxp/default.nix index 5a14981ef26..a118195d470 100644 --- a/pkgs/tools/misc/tmuxp/default.nix +++ b/pkgs/tools/misc/tmuxp/default.nix @@ -4,11 +4,11 @@ with python.pkgs; buildPythonApplication rec { pname = "tmuxp"; - version = "1.5.5"; + version = "1.5.6"; src = fetchPypi { inherit pname version; - sha256 = "1jbziyqggbfd5m884lg00h0zi99c6cvjxkl4jzr34c4affr295yd"; + sha256 = "c305fc45bbf1093561e03cdcd37b2ab1f2efb9e208e74b2dc294cf414859bd8a"; }; postPatch = '' diff --git a/pkgs/tools/misc/vimv/default.nix b/pkgs/tools/misc/vimv/default.nix new file mode 100644 index 00000000000..023d3384ed6 --- /dev/null +++ b/pkgs/tools/misc/vimv/default.nix @@ -0,0 +1,24 @@ +{ stdenv, bash, fetchFromGitHub }: +stdenv.mkDerivation { + pname = "vimv"; + version = "unstable-2019-10-31"; + src = fetchFromGitHub { + owner = "thameera"; + repo = "vimv"; + rev = "4152496c1946f68a13c648fb7e583ef23dac4eb8"; + sha256 = "1fsrfx2gs6bqx7wk7pgcji2i2x4alqpsi66aif4kqvnpqfhcfzjd"; + }; + phases = [ "installPhase" ]; + installPhase = '' + install -d $out/bin + install $src/vimv $out/bin/vimv + patchShebangs $out/bin/vimv + ''; + meta = with stdenv.lib; { + homepage = "https://github.com/thameera/vimv"; + description = "Batch-rename files using Vim"; + license = licenses.mit; + platforms = platforms.linux; + maintainers = [ maintainers.kmein ]; + }; +} diff --git a/pkgs/tools/misc/vimwiki-markdown/default.nix b/pkgs/tools/misc/vimwiki-markdown/default.nix index b85bb087660..58fc991beb3 100644 --- a/pkgs/tools/misc/vimwiki-markdown/default.nix +++ b/pkgs/tools/misc/vimwiki-markdown/default.nix @@ -6,12 +6,12 @@ }: buildPythonApplication rec { - version = "0.3.0"; + version = "0.3.1"; pname = "vimwiki-markdown"; src = fetchPypi { inherit version pname; - sha256 = "1icfnc623f9pyn59wgb76g0fnsx41s87q69x354qy17gw23bxabx"; + sha256 = "50032c62947422c8afbc1733e50526818df7d885d1cc41a27ff65fc26cd3c1c5"; }; propagatedBuildInputs= [ diff --git a/pkgs/tools/misc/vivid/default.nix b/pkgs/tools/misc/vivid/default.nix index 70746287986..35a1d5d2d12 100644 --- a/pkgs/tools/misc/vivid/default.nix +++ b/pkgs/tools/misc/vivid/default.nix @@ -13,11 +13,6 @@ rustPlatform.buildRustPackage rec { cargoSha256 = "10xddr5cccc5cmhn4kwi27h3krmgapd7bqcp4rhjlbhdhsw7qxkx"; - # Remove after https://github.com/NixOS/nixpkgs/pull/97000 lands into master - preConfigure = stdenv.lib.optionalString stdenv.isDarwin '' - unset SDKROOT - ''; - meta = with stdenv.lib; { description = "A generator for LS_COLORS with support for multiple color themes"; homepage = "https://github.com/sharkdp/vivid"; diff --git a/pkgs/tools/misc/vix/default.nix b/pkgs/tools/misc/vix/default.nix new file mode 100644 index 00000000000..7e93cd5d67e --- /dev/null +++ b/pkgs/tools/misc/vix/default.nix @@ -0,0 +1,24 @@ +{ stdenv, fetchFromGitHub, autoreconfHook, SDL }: + +stdenv.mkDerivation { + pname = "vix"; + version = "0.1.2"; + + src = fetchFromGitHub { + owner = "BatchDrake"; + repo = "vix"; + rev = "824b6755157a0f7430a0be0af454487d1492204d"; + sha256 = "1y0a2sajkrsg36px21b8lgx1irf0pyj7hccyd6k806bm4zhgxw1z"; + }; + + nativeBuildInputs = [ autoreconfHook ]; + + buildInputs = [ SDL ]; + + meta = with stdenv.lib; { + description = "Visual Interface heXadecimal dump "; + homepage = "http://actinid.org/vix/"; + license = licenses.gpl3; + maintainers = [ maintainers.ehmry ]; + }; +} diff --git a/pkgs/tools/misc/woof/default.nix b/pkgs/tools/misc/woof/default.nix index e00634dd53e..e89ef8dab0e 100644 --- a/pkgs/tools/misc/woof/default.nix +++ b/pkgs/tools/misc/woof/default.nix @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { description = "Web Offer One File - Command-line utility to easily exchange files over a local network"; license = stdenv.lib.licenses.gpl2Plus; platforms = stdenv.lib.platforms.unix; - maintainers = with maintainers; [ lschuermann ]; + maintainers = with maintainers; [ matthiasbeyer ]; }; } diff --git a/pkgs/tools/misc/wootility/default.nix b/pkgs/tools/misc/wootility/default.nix index 91203e5f7be..a79f414a359 100644 --- a/pkgs/tools/misc/wootility/default.nix +++ b/pkgs/tools/misc/wootility/default.nix @@ -35,7 +35,7 @@ appimageTools.wrapType2 rec { meta = with lib; { homepage = "https://wooting.io/wootility"; - description = "Wootility is customization and management software for Wooting keyboards."; + description = "A customization and management software for Wooting keyboards"; platforms = [ "x86_64-linux" ]; license = "unknown"; maintainers = with maintainers; [ davidtwco ]; diff --git a/pkgs/tools/misc/yle-dl/default.nix b/pkgs/tools/misc/yle-dl/default.nix index 00624a482c8..40bf214f463 100644 --- a/pkgs/tools/misc/yle-dl/default.nix +++ b/pkgs/tools/misc/yle-dl/default.nix @@ -1,29 +1,29 @@ -{ stdenv, fetchFromGitHub, rtmpdump, php, pythonPackages, ffmpeg_3 }: +{ stdenv, fetchFromGitHub, rtmpdump, php, wget, python3Packages, ffmpeg_3 }: -pythonPackages.buildPythonApplication rec { +python3Packages.buildPythonApplication rec { pname = "yle-dl"; - version = "2.31"; + version = "20201022"; src = fetchFromGitHub { owner = "aajanki"; repo = "yle-dl"; rev = version; - sha256 = "0k93p9csyjm0w33diwl5s22kzs3g78jl3n9k8nxxpqrybfjl912f"; + sha256 = "0p56pb3wxdzqgs4fsh4hn06xs0mgzgznqqr0bn2vkkkibnkr1asp"; }; - propagatedBuildInputs = with pythonPackages; [ - lxml pyamf pycrypto requests future ffmpeg_3 setuptools + propagatedBuildInputs = with python3Packages; [ + attrs ConfigArgParse ffmpeg_3 future lxml requests ]; - pythonPath = [ rtmpdump php ]; + pythonPath = [ rtmpdump php wget ]; doCheck = false; # tests require network access - checkInputs = with pythonPackages; [ pytest pytestrunner ]; + checkInputs = with python3Packages; [ ffmpeg_3 pytest pytestrunner ]; meta = with stdenv.lib; { description = "Downloads videos from Yle (Finnish Broadcasting Company) servers"; homepage = "https://aajanki.github.io/yle-dl/"; - license = licenses.gpl3; - maintainers = [ maintainers.dezgeg ]; - platforms = platforms.linux; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ dezgeg SuperSandro2000 ]; + platforms = platforms.unix; }; } diff --git a/pkgs/tools/misc/you-get/default.nix b/pkgs/tools/misc/you-get/default.nix index 8314dc2c9a3..155081db36a 100644 --- a/pkgs/tools/misc/you-get/default.nix +++ b/pkgs/tools/misc/you-get/default.nix @@ -2,7 +2,7 @@ buildPythonApplication rec { pname = "you-get"; - version = "0.4.1456"; + version = "0.4.1475"; # Tests aren't packaged, but they all hit the real network so # probably aren't suitable for a build environment anyway. @@ -10,7 +10,7 @@ buildPythonApplication rec { src = fetchPypi { inherit pname version; - sha256 = "14miw5gmj571584rmdzjxf88icmb1psrsfbwpabn8blz8l5aq6bv"; + sha256 = "432c04170bb5f4881ca6af9c802b6c90e81759811487b8d7918762dcd674697f"; }; meta = with stdenv.lib; { diff --git a/pkgs/tools/misc/yubikey-manager-qt/default.nix b/pkgs/tools/misc/yubikey-manager-qt/default.nix index 01454b48254..5b5fb66be30 100644 --- a/pkgs/tools/misc/yubikey-manager-qt/default.nix +++ b/pkgs/tools/misc/yubikey-manager-qt/default.nix @@ -57,7 +57,7 @@ stdenv.mkDerivation rec { meta = with lib; { inherit version; - description = "Cross-platform application for configuring any YubiKey over all USB interfaces."; + description = "Cross-platform application for configuring any YubiKey over all USB interfaces"; homepage = "https://developers.yubico.com/yubikey-manager-qt/"; license = licenses.bsd2; maintainers = [ maintainers.cbley ]; diff --git a/pkgs/tools/misc/yubikey-manager/default.nix b/pkgs/tools/misc/yubikey-manager/default.nix index a6b0a93324f..505d26bb582 100644 --- a/pkgs/tools/misc/yubikey-manager/default.nix +++ b/pkgs/tools/misc/yubikey-manager/default.nix @@ -47,7 +47,7 @@ python3Packages.buildPythonPackage rec { meta = with lib; { homepage = "https://developers.yubico.com/yubikey-manager"; - description = "Command line tool for configuring any YubiKey over all USB transports."; + description = "Command line tool for configuring any YubiKey over all USB transports"; license = licenses.bsd2; platforms = platforms.unix; diff --git a/pkgs/tools/misc/zsh-autoenv/default.nix b/pkgs/tools/misc/zsh-autoenv/default.nix index c44837b877d..f4295443f69 100644 --- a/pkgs/tools/misc/zsh-autoenv/default.nix +++ b/pkgs/tools/misc/zsh-autoenv/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation { cat <