From bf484519590560623b44825f4b68914b913a9081 Mon Sep 17 00:00:00 2001
From: Luis Pedro Coelho <luis@luispedro.org>
Date: Fri, 29 Mar 2019 15:03:16 +0100
Subject: [PATCH] megahit: init at 1.1.4

This is widely used in bioinformatics for assembling genomes &
metagenomes
---
 .../science/biology/megahit/default.nix       | 29 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 31 insertions(+)
 create mode 100644 pkgs/applications/science/biology/megahit/default.nix

diff --git a/pkgs/applications/science/biology/megahit/default.nix b/pkgs/applications/science/biology/megahit/default.nix
new file mode 100644
index 00000000000..56bb35b64df
--- /dev/null
+++ b/pkgs/applications/science/biology/megahit/default.nix
@@ -0,0 +1,29 @@
+{ stdenv, fetchFromGitHub, zlib }:
+
+stdenv.mkDerivation rec {
+  pname    = "megahit";
+  version = "1.1.4";
+
+  src = fetchFromGitHub {
+    owner = "voutcn";
+    repo = "megahit";
+    rev = "v${version}";
+    sha256 = "011k0776w76l03zmy70kfd3y9zjmdnspfbs9fcxmnl3bdwd36kcw";
+  };
+
+  buildInputs = [ zlib ];
+
+  installPhase = ''
+    for bin in megahit_sdbg_build megahit megahit_asm_core megahit_toolkit; do
+        install -vD $bin $out/bin/$bin
+    done
+  '';
+
+  meta = with stdenv.lib; {
+    description = "An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph";
+    license     = licenses.gpl3;
+    homepage    = https://github.com/voutcn/megahit;
+    maintainers = with maintainers; [ luispedro ];
+    platforms = [ "x86_64-linux" ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index d8c3459e987..7ad84c9b28d 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21681,6 +21681,8 @@ in
 
   mrbayes = callPackage ../applications/science/biology/mrbayes { };
 
+  megahit = callPackage ../applications/science/biology/megahit { };
+
   messer-slim = callPackage ../applications/science/biology/messer-slim { };
 
   minc_tools = callPackage ../applications/science/biology/minc-tools { };