From c47425a230522a96650d8c4f41d6483253018742 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?St=C3=A9phan=20Kochen?= Date: Sat, 22 May 2021 20:56:09 +0200 Subject: [PATCH] sambamba: fix darwin build --- pkgs/applications/science/biology/sambamba/default.nix | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/pkgs/applications/science/biology/sambamba/default.nix b/pkgs/applications/science/biology/sambamba/default.nix index 7b5141302f7..abfac6ce083 100644 --- a/pkgs/applications/science/biology/sambamba/default.nix +++ b/pkgs/applications/science/biology/sambamba/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, python3, which, ldc, zlib }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, python3, which, ldc, zlib }: stdenv.mkDerivation rec { pname = "sambamba"; @@ -12,6 +12,14 @@ stdenv.mkDerivation rec { fetchSubmodules = true; }; + patches = [ + # Fixes hardcoded gcc, making clang build possible. + (fetchpatch { + url = "https://github.com/biod/sambamba/commit/c50a1c91e1ba062635467f197139bf6784e9be15.patch"; + sha256 = "1y0vlybmb9wpg4z1nca7m96mk9hxmvd3yrg7w8rxscj45hcqvf8q"; + }) + ]; + nativeBuildInputs = [ which python3 ldc ]; buildInputs = [ zlib ];