From c36a1d650239e5be17a369e7b912f76ffcea7849 Mon Sep 17 00:00:00 2001 From: Tim Steinbach Date: Thu, 3 Nov 2016 21:33:19 -0400 Subject: [PATCH] paml: 4.2a -> 4.9c --- pkgs/applications/science/biology/paml/default.nix | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/pkgs/applications/science/biology/paml/default.nix b/pkgs/applications/science/biology/paml/default.nix index cec0aa7e5eb..589c2809a93 100644 --- a/pkgs/applications/science/biology/paml/default.nix +++ b/pkgs/applications/science/biology/paml/default.nix @@ -1,11 +1,11 @@ {stdenv, fetchurl}: stdenv.mkDerivation rec { - version = "4.2a"; + version = "4.9c"; name = "paml-${version}"; src = fetchurl { - url = "http://abacus.gene.ucl.ac.uk/software/paml${version}.tar.gz"; - sha256 = "0yywyrjgxrpavp50n00l01pl90b7pykgb2k53yrlykz9dnf583pb"; + url = "http://abacus.gene.ucl.ac.uk/software/paml${version}.tgz"; + sha256 = "18a1l47223l7jyjavm8a8la84q9k9kbxwmj7kz4z3pdx70qrl04j"; }; preBuild = '' @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { ''; installPhase = '' mkdir -pv $out/bin - cp -v codeml $out/bin + cp -v codeml $out/bin cp -v baseml $out/bin cp -v basemlg $out/bin cp -v chi2 $out/bin @@ -28,6 +28,6 @@ stdenv.mkDerivation rec { description = "Phylogenetic Analysis by Maximum Likelihood (PAML)"; longDescription = ''PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. It is maintained and distributed for academic use free of charge by Ziheng Yang. ANSI C source codes are distributed for UNIX/Linux/Mac OSX, and executables are provided for MS Windows. PAML is not good for tree making. It may be used to estimate parameters and test hypotheses to study the evolutionary process, when you have reconstructed trees using other programs such as PAUP*, PHYLIP, MOLPHY, PhyML, RaxML, etc.''; license = "non-commercial"; - homepage = http://abacus.gene.ucl.ac.uk/software/paml.html; + homepage = http://abacus.gene.ucl.ac.uk/software/paml.html; }; }