Merge master into staging-next

pkgs/development/python-modules/aiokafka/default.nix

@@ -0,0 +1,49 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, isPy27
+, kafka-python
+, cython
+, zlib
+}:
+
+buildPythonPackage rec {
+  pname = "aiokafka";
+  version = "0.5.2";
+
+  disabled = isPy27;
+
+  src = fetchFromGitHub {
+    owner = "aio-libs";
+    repo = "aiokafka";
+    rev = "v${version}";
+    sha256 = "062kqsq75fi5pbpqf2a8nxm43pxpr6bwplg6bp4nv2a68r850pki";
+  };
+
+  nativeBuildInputs = [
+    cython
+  ];
+
+  buildInputs = [
+    zlib
+  ];
+
+  propagatedBuildInputs = [
+    kafka-python
+  ];
+
+  postPatch = ''
+    substituteInPlace setup.py \
+       --replace "kafka-python==1.4.6" "kafka-python"
+  '';
+
+  # checks require running kafka server
+  doCheck = false;
+
+  meta = with lib; {
+    description = "Kafka integration with asyncio";
+    homepage = https://aiokafka.readthedocs.org;
+    license = licenses.asl20;
+    maintainers = [ maintainers.costrouc ];
+  };
+}

pkgs/development/python-modules/aiorun/default.nix

@@ -0,0 +1,45 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, isPy27
+, pytest
+, pytestcov
+, uvloop
+}:
+
+buildPythonPackage rec {
+  pname = "aiorun";
+  version = "2019.11.1";
+  format = "flit";
+
+  disabled = isPy27;
+
+  src = fetchFromGitHub {
+    owner = "cjrh";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "04p3sci6af6qqfkcqamsqhmqqrigcwvl4bmx8yv5ppvkyq39pxi7";
+  };
+
+  checkInputs = [
+    pytest
+    pytestcov
+    uvloop
+  ];
+
+  # allow for writable directory for darwin
+  preBuild = ''
+    export HOME=$TMPDIR
+  '';
+
+  checkPhase = ''
+     pytest
+  '';
+
+  meta = with lib; {
+    description = "Boilerplate for asyncio applications";
+    homepage = https://github.com/cjrh/aiorun;
+    license = licenses.asl20;
+    maintainers = [ maintainers.costrouc ];
+  };
+}

pkgs/development/python-modules/casbin/default.nix

@@ -0,0 +1,40 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, simpleeval
+, isPy27
+, coveralls
+}:
+
+buildPythonPackage rec {
+  pname = "casbin";
+  version = "0.8.3";
+
+  disabled = isPy27;
+
+  src = fetchFromGitHub {
+    owner = pname;
+    repo = "pycasbin";
+    rev = "v${version}";
+    sha256 = "1s89m62933m4wprsknwhabgg7irykrcimv80hh2zkyyslz5vbq71";
+  };
+
+  propagatedBuildInputs = [
+    simpleeval
+  ];
+
+  checkInputs = [
+    coveralls
+  ];
+
+  checkPhase = ''
+    coverage run -m unittest discover -s tests -t tests
+  '';
+
+  meta = with lib; {
+    description = "An authorization library that supports access control models like ACL, RBAC, ABAC in Python";
+    homepage = https://github.com/casbin/pycasbin;
+    license = licenses.asl20;
+    maintainers = [ maintainers.costrouc ];
+  };
+}

pkgs/development/python-modules/gym/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "gym";
-  version = "0.15.4";
+  version = "0.15.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "3b930cbe1c76bbd30455b5e82ba723dea94159a5f988e927f443324bf7cc7ddd";
+    sha256 = "18381e13bbd1e2f206a1b88a2af4fb87affd7d06ee7955a6e5e6a79478a9adfc";
   };
 
   postPatch = ''

pkgs/development/python-modules/gyp/default.nix

@@ -1,6 +1,6 @@
 { stdenv
 , buildPythonPackage
-, fetchgit
+, fetchFromGitiles
 , isPy3k
 }:
 
@@ -9,8 +9,8 @@ buildPythonPackage {
   version = "2015-06-11";
   disabled = isPy3k;
 
-  src = fetchgit {
-    url = "https://chromium.googlesource.com/external/gyp.git";
+  src = fetchFromGitiles {
+    url = "https://chromium.googlesource.com/external/gyp";
     rev = "fdc7b812f99e48c00e9a487bd56751bbeae07043";
     sha256 = "1imgxsl4mr1662vsj2mlnpvvrbz71yk00w8p85vi5bkgmc6awgiz";
   };

pkgs/development/python-modules/starfish/default.nix

@@ -85,5 +85,6 @@ buildPythonPackage rec {
     homepage = https://spacetx-starfish.readthedocs.io/en/latest/;
     license = licenses.mit;
     maintainers = [ maintainers.costrouc ];
+    broken = true; # incompatible with latest python-dateutil, scikit-image
   };
 }