Merge branch 'master' into staging-next

Larger rebuild, probably mainly haskell.
Hydra nixpkgs: ?compare=1503325

pkgs/development/python-modules/filetype/default.nix

@@ -0,0 +1,30 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, python
+}:
+
+buildPythonPackage rec {
+  pname = "filetype";
+  version = "1.0.2";
+
+  # No tests in PyPI tarball
+  # See https://github.com/h2non/filetype.py/pull/33
+  src = fetchFromGitHub {
+    owner = "h2non";
+    repo = "filetype.py";
+    rev = "v${version}";
+    sha256 = "000gl3q2cadfnmqnbxg31ppc3ak8blzb4nfn75faxbp7b6r5qgr2";
+  };
+
+  checkPhase = ''
+    ${python.interpreter} -m unittest discover
+  '';
+
+  meta = with lib; {
+    description = "Infer file type and MIME type of any file/buffer";
+    homepage = https://github.com/h2non/filetype.py;
+    license = licenses.mit;
+    maintainers = with maintainers; [ dotlambda ];
+  };
+}

pkgs/development/python-modules/grammalecte/default.nix

@@ -7,25 +7,22 @@
 
 buildPythonPackage rec {
   pname = "grammalecte";
-  version = "0.6.1";
+  version = "0.6.5";
 
   src = fetchurl {
     url = "http://www.dicollecte.org/grammalecte/zip/Grammalecte-fr-v${version}.zip";
-    sha256 = "0y2ck6pkd2p3cbjlxxvz3x5rnbg3ghfx97n13302rnab66cy4zkh";
+    sha256 = "11byjs3ggdhia5f4vyfqfvbbczsfqimll98h98g7hlsrm7vrifb0";
   };
 
   propagatedBuildInputs = [ bottle ];
 
   preBuild = "cd ..";
-  postInstall = ''
-    rm $out/bin/bottle.py
-  '';
 
   disabled = !isPy3k;
 
   meta = {
     description = "Grammalecte is an open source grammar checker for the French language";
-    homepage = https://dicollecte.org/grammalecte/;
+    homepage = https://grammalecte.net;
     license = with lib.licenses; [ gpl3 ];
     maintainers = with lib.maintainers; [ apeyroux ];
   };

pkgs/development/python-modules/isbnlib/default.nix

@@ -0,0 +1,35 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, nose
+, coverage
+}:
+
+buildPythonPackage rec {
+  pname = "isbnlib";
+  version = "3.9.4";
+
+  # PyPI tarball is missing LICENSE file
+  # See https://github.com/xlcnd/isbnlib/pull/53
+  src = fetchFromGitHub {
+    owner = "xlcnd";
+    repo = "isbnlib";
+    rev = "v${version}";
+    sha256 = "0gc0k5khf34b4zz56a9zc3rscdhj3bx849lbzgmzpji30sbyy1fh";
+  };
+
+  checkInputs = [
+    nose
+    coverage
+  ];
+
+  # requires network connection
+  doCheck = false;
+
+  meta = with lib; {
+    description = "Extract, clean, transform, hyphenate and metadata for ISBNs";
+    homepage = https://github.com/xlcnd/isbnlib;
+    license = licenses.lgpl3;
+    maintainers = with maintainers; [ dotlambda ];
+  };
+}

pkgs/development/python-modules/keras-preprocessing/default.nix

@@ -1,24 +1,32 @@
-{ lib, buildPythonPackage, fetchPypi, numpy, scipy, six }:
+{ lib, buildPythonPackage, fetchPypi, numpy, six, scipy, pillow, pytest, Keras }:
 
 buildPythonPackage rec {
   pname = "Keras_Preprocessing";
-  version = "1.0.5";
+  version = "1.0.8";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ef2e482c4336fcf7180244d06f4374939099daa3183816e82aee7755af35b754";
+    sha256 = "6e669aa713727f0bc08f756616f64e0dfa75d822226cfc0dcf33297ab05cef7d";
   };
 
-  # Cyclic dependency: keras-preprocessing requires keras, which requires keras-preprocessing
-  postPatch = ''
-    sed -i "s/keras>=[^']*//" setup.py
+  propagatedBuildInputs = [
+    # required
+    numpy six
+    # optional
+    scipy pillow
+  ];
+
+  checkInputs = [
+    pytest Keras
+  ];
+
+  checkPhase = ''
+    py.test tests/
   '';
 
-  # No tests in PyPI tarball
+  # Cyclic dependency: keras-preprocessing's tests require Keras, which requires keras-preprocessing
   doCheck = false;
 
-  propagatedBuildInputs = [ numpy scipy six ];
-
   meta = with lib; {
     description = "Easy data preprocessing and data augmentation for deep learning models";
     homepage = https://github.com/keras-team/keras-preprocessing;

pkgs/development/python-modules/keras/default.nix

@@ -25,14 +25,6 @@ buildPythonPackage rec {
     keras-applications keras-preprocessing
   ];
 
-  # Keras 2.2.2 expects older versions of keras_applications
-  # and keras_preprocessing. These substitutions can be removed
-  # for for the next Keras release.
-  postPatch = ''
-    substituteInPlace setup.py --replace "keras_applications==1.0.4" "keras_applications==1.0.5"
-    substituteInPlace setup.py --replace "keras_preprocessing==1.0.2" "keras_preprocessing==1.0.3"
-  '';
-
   # Couldn't get tests working
   doCheck = false;
 

pkgs/development/python-modules/keyutils/default.nix

@@ -2,14 +2,14 @@
 
 buildPythonPackage rec {
   pname = "keyutils";
-  version = "0.5";
+  version = "0.6";
 
   # github version comes bundled with tests
   src = fetchFromGitHub {
     owner = "sassoftware";
     repo = "python-keyutils";
-    rev = "v${version}";
-    sha256 = "1gga60w8sb3r5bxa0bfp7d7wzg6s3db5y7aizr14p2pvp92d8bdi";
+    rev = version;
+    sha256 = "0pfqfr5xqgsqkxzrmj8xl2glyl4nbq0irs0k6ik7iy3gd3mxf5g1";
   };
 
   buildInputs = [ keyutils ];