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mosdeph: fix compilation with nim 0.19

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This commit is contained in:
royneary 2018-10-31 22:03:27 +01:00
parent 9dcdf5a545
commit bb2bae6986
1 changed files with 6 additions and 3 deletions
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9
pkgs/applications/science/biology/mosdepth/default.nix
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@ -4,8 +4,8 @@ let
hts-nim = fetchFromGitHub { hts-nim = fetchFromGitHub {
owner = "brentp"; owner = "brentp";
repo = "hts-nim"; repo = "hts-nim";
rev = "9cd83e30522ab64cd71eb8209be4154aa5579ce1"; rev = "v0.2.5";
sha256 = "10g408idy14667varq1syf06rrbpk63i3ib7i5dh1md4ib19av6f"; sha256 = "1fma99rjqxgg9dihkd10hm1jjp5amsk5wsxnvq1lk4mcsjix5xqb";
}; };
docopt = fetchFromGitHub { docopt = fetchFromGitHub {
@ -28,7 +28,10 @@ in stdenv.mkDerivation rec {
buildInputs = [ nim ]; buildInputs = [ nim ];
buildPhase = "nim -p:${hts-nim}/src -p:${docopt}/src c -d:release mosdepth.nim"; buildPhase = ''
HOME=$TMPDIR
nim -p:${hts-nim}/src -p:${docopt}/src c --nilseqs:on -d:release mosdepth.nim
'';
installPhase = "install -Dt $out/bin mosdepth"; installPhase = "install -Dt $out/bin mosdepth";
fixupPhase = "patchelf --set-rpath ${stdenv.lib.makeLibraryPath [ stdenv.cc.cc htslib pcre ]} $out/bin/mosdepth"; fixupPhase = "patchelf --set-rpath ${stdenv.lib.makeLibraryPath [ stdenv.cc.cc htslib pcre ]} $out/bin/mosdepth";