Merge remote-tracking branch 'upstream/master' into HEAD

lib/licenses.nix

@@ -99,6 +99,11 @@ lib.mapAttrs (n: v: v // { shortName = n; }) rec {
     fullName = ''BSD 4-clause "Original" or "Old" License'';
   };
 
+  clArtistic = spdx {
+    spdxId = "ClArtistic";
+    fullName = "Clarified Artistic License";
+  };
+
   cc0 = spdx {
     spdxId = "CC0-1.0";
     fullName = "Creative Commons Zero v1.0 Universal";

lib/maintainers.nix

@@ -765,6 +765,7 @@
   wscott = "Wayne Scott <wsc9tt@gmail.com>";
   wyvie = "Elijah Rum <elijahrum@gmail.com>";
   xaverdh = "Dominik Xaver Hörl <hoe.dom@gmx.de>";
+  xeji = "xeji <xeji@cat3.de>";
   xnwdd = "Guillermo NWDD <nwdd+nixos@no.team>";
   xurei = "Olivier Bourdoux <olivier.bourdoux@gmail.com>";
   xvapx = "Marti Serra <marti.serra.coscollano@gmail.com>";

nixos/modules/module-list.nix

@@ -246,6 +246,7 @@
   ./services/hardware/pcscd.nix
   ./services/hardware/pommed.nix
   ./services/hardware/sane.nix
+  ./services/hardware/sane_extra_backends/brscan4.nix
   ./services/hardware/tcsd.nix
   ./services/hardware/tlp.nix
   ./services/hardware/thinkfan.nix
@@ -342,6 +343,7 @@
   ./services/misc/nix-optimise.nix
   ./services/misc/nixos-manual.nix
   ./services/misc/nix-ssh-serve.nix
+  ./services/misc/novacomd.nix
   ./services/misc/nzbget.nix
   ./services/misc/octoprint.nix
   ./services/misc/osrm.nix

nixos/modules/services/misc/novacomd.nix

@@ -0,0 +1,31 @@
+{ config, lib, pkgs, ... }:
+
+with lib;
+
+let
+
+  cfg = config.services.novacomd;
+
+in {
+
+  options = {
+    services.novacomd = {
+      enable = mkEnableOption "Novacom service for connecting to WebOS devices";
+    };
+  };
+
+  config = mkIf cfg.enable {
+    environment.systemPackages = [ pkgs.webos.novacom ];
+
+    systemd.services.novacomd = {
+      description = "Novacom WebOS daemon";
+      wantedBy = [ "multi-user.target" ];
+
+      serviceConfig = {
+        ExecStart = "${pkgs.webos.novacomd}/sbin/novacomd";
+      };
+    };
+  };
+
+  meta.maintainers = with maintainers; [ dtzWill ];
+}

nixos/release.nix

@@ -318,6 +318,7 @@ in rec {
   tests.nfs4 = callTest tests/nfs.nix { version = 4; };
   tests.nginx = callTest tests/nginx.nix { };
   tests.nghttpx = callTest tests/nghttpx.nix { };
+  tests.novacomd = callTestOnTheseSystems ["x86_64-linux"] tests/novacomd.nix { };
   tests.leaps = callTest tests/leaps.nix { };
   tests.nsd = callTest tests/nsd.nix {};
   tests.openssh = callTest tests/openssh.nix {};
@@ -329,6 +330,7 @@ in rec {
   tests.postgresql = callSubTests tests/postgresql.nix {};
   tests.pgmanage = callTest tests/pgmanage.nix {};
   tests.postgis = callTest tests/postgis.nix {};
+  tests.powerdns = callTest tests/powerdns.nix {};
   #tests.pgjwt = callTest tests/pgjwt.nix {};
   tests.predictable-interface-names = callSubTests tests/predictable-interface-names.nix {};
   tests.printing = callTest tests/printing.nix {};

nixos/tests/novacomd.nix

@@ -0,0 +1,28 @@
+import ./make-test.nix ({ pkgs, ...} : {
+  name = "novacomd";
+  meta = with pkgs.stdenv.lib.maintainers; {
+    maintainers = [ dtzWill ];
+  };
+
+  machine = { config, pkgs, ... }: {
+    services.novacomd.enable = true;
+  };
+
+  testScript = ''
+    startAll;
+
+    $machine->waitForUnit("novacomd.service");
+
+    # Check status and try connecting with novacom
+    $machine->succeed("systemctl status novacomd.service >&2");
+    $machine->succeed("novacom -l");
+
+    # Stop the daemon, double-check novacom fails if daemon isn't working
+    $machine->stopJob("novacomd");
+    $machine->fail("novacom -l");
+
+    # And back again for good measure
+    $machine->startJob("novacomd");
+    $machine->succeed("novacom -l");
+  '';
+})

nixos/tests/powerdns.nix

@@ -0,0 +1,12 @@
+import ./make-test.nix ({ pkgs, ... }: {
+  name = "powerdns";
+
+  nodes.server = { config, pkgs, ... }: {
+    services.powerdns.enable = true;
+  };
+
+  testScript = ''
+    $server->waitForUnit("pdns");
+    $server->succeed("${pkgs.dnsutils}/bin/dig version.bind txt chaos \@127.0.0.1");
+  '';
+})

pkgs/applications/audio/gpodder/default.nix

@@ -5,7 +5,7 @@
 
 python3Packages.buildPythonApplication rec {
   name = "gpodder-${version}";
-  version = "3.10.0";
+  version = "3.10.1";
 
   format = "other";
 
@@ -13,7 +13,7 @@ python3Packages.buildPythonApplication rec {
     owner = "gpodder";
     repo = "gpodder";
     rev = version;
-    sha256 = "0f3m1kcj641xiwsxan66k81lvslkl3aziakn5z17y4mmdci79jv0";
+    sha256 = "1cqhm5h0kkdb2m691dbj8i3bixl7bw0iww2pl6k1jkz8mgafyd9d";
   };
 
   postPatch = with stdenv.lib; ''
@@ -26,7 +26,11 @@ python3Packages.buildPythonApplication rec {
     glibcLocales
   ];
 
-  buildInputs = [ python3 gobjectIntrospection ];
+  buildInputs = [
+    python3
+    gobjectIntrospection
+    gnome3.defaultIconTheme
+  ];
 
   checkInputs = with python3Packages; [
     coverage minimock

pkgs/applications/audio/mikmod/default.nix

@@ -1,11 +1,11 @@
 { stdenv, fetchurl, libmikmod, ncurses, alsaLib }:
 
 stdenv.mkDerivation rec {
-  name = "mikmod-3.2.6";
+  name = "mikmod-3.2.8";
 
   src = fetchurl {
     url = "mirror://sourceforge/mikmod/${name}.tar.gz";
-    sha256 = "0wr61raj10rpl64mk3x9g3rwys898fbzyg93c6mrz89nvc74wm04";
+    sha256 = "1k54p8pn3jinha0f2i23ad15pf1pamibzcxjrbzjbklpcz1ipc6v";
   };
 
   buildInputs = [ libmikmod ncurses ];

pkgs/applications/audio/pulseaudio-dlna/default.nix

@@ -0,0 +1,50 @@
+{ fetchFromGitHub, stdenv, pythonPackages
+, mp3Support ? true, lame ? null
+, opusSupport ? true, opusTools ? null
+, faacSupport ? false, faac ? null
+, flacSupport ? true, flac ? null
+, soxSupport ? true, sox ? null
+, vorbisSupport ? true, vorbisTools ? null 
+}:
+
+assert mp3Support -> lame != null;
+assert opusSupport -> opusTools != null;
+assert faacSupport -> faac != null;
+assert flacSupport -> flac != null;
+assert soxSupport -> sox != null;
+assert vorbisSupport -> vorbisTools != null;
+
+pythonPackages.buildPythonApplication rec {
+  pname = "pulseaudio-dlna";
+  version = "2017-11-01";
+
+  src = fetchFromGitHub {
+    owner = "masmu";
+    repo = "pulseaudio-dlna";
+    rev = "4472928dd23f274193f14289f59daec411023ab0";
+    sha256 = "1dfn7036vrq49kxv4an7rayypnm5dlawsf02pfsldw877hzdamqk";
+  };
+  
+  # pulseaudio-dlna has no tests
+  doCheck = false;
+
+  propagatedBuildInputs = with pythonPackages; [
+    dbus-python docopt requests setproctitle protobuf psutil futures
+    chardet notify2 netifaces pyroute2 pygobject2 lxml zeroconf ]
+    ++ stdenv.lib.optional mp3Support lame
+    ++ stdenv.lib.optional opusSupport opusTools
+    ++ stdenv.lib.optional faacSupport faac
+    ++ stdenv.lib.optional flacSupport flac
+    ++ stdenv.lib.optional soxSupport sox
+    ++ stdenv.lib.optional vorbisSupport vorbisTools;
+
+  meta = with stdenv.lib; {
+    description = "A lightweight streaming server which brings DLNA / UPNP and Chromecast support to PulseAudio and Linux";
+    homepage = https://github.com/masmu/pulseaudio-dlna;
+
+    license = licenses.gpl3Plus;
+
+    maintainers = with maintainers; [ mog ];
+    platforms = platforms.linux;
+  };
+}

pkgs/applications/backup/crashplan/crashplan-small-business.nix

@@ -96,7 +96,8 @@ stdenv.mkDerivation rec {
     description = "An online backup solution";
     homepage = http://www.crashplan.com/business/;
     license = licenses.unfree;
+    platforms = [ "x86_64-linux" ];
     maintainers = with maintainers; [ xvapx ];
   };
 
-}
+}

pkgs/applications/editors/joe/default.nix

@@ -1,17 +1,17 @@
 { stdenv, fetchurl } :
 
 stdenv.mkDerivation rec {
-  version = "4.4";
+  version = "4.6";
   name = "joe-${version}";
 
   src = fetchurl {
     url = "mirror://sourceforge/joe-editor/${name}.tar.gz";
-    sha256 = "0y898r1xlrv75m00y598rvwwsricabplyh80wawsqafapcl4hw55";
+    sha256 = "1pmr598xxxm9j9dl93kq4dv36zyw0q2dh6d7x07hf134y9hhlnj9";
   };
 
   meta = with stdenv.lib; {
     description = "A full featured terminal-based screen editor";
-    homepage = http://joe-editor.sourceforge.net;
+    homepage = https://joe-editor.sourceforge.io;
     license = licenses.gpl2;
     platforms = platforms.unix;
   };

pkgs/applications/misc/buku/default.nix

@@ -1,14 +1,14 @@
 { stdenv, python3, fetchFromGitHub }:
 
 with python3.pkgs; buildPythonApplication rec {
-  version = "3.4";
+  version = "3.6";
   name = "buku-${version}";
 
   src = fetchFromGitHub {
     owner = "jarun";
     repo = "buku";
     rev = "v${version}";
-    sha256 = "0v0wvsxw78g6yl606if25k1adghr5764chwy1kl7dsxvchqwvmg0";
+    sha256 = "1639sf200n9rxgkvvhlhnrjsb7vn42p1fl1rx562axh3vpr6j4c4";
   };
 
   nativeBuildInputs = [
@@ -33,7 +33,9 @@ with python3.pkgs; buildPythonApplication rec {
 
     # Disables a test which requires internet
     substituteInPlace tests/test_bukuDb.py \
-      --replace "@pytest.mark.slowtest" "@unittest.skip('skipping')"
+      --replace "@pytest.mark.slowtest" "@unittest.skip('skipping')" \
+      --replace "self.assertEqual(shorturl, 'http://tny.im/yt')" "" \
+      --replace "self.assertEqual(url, 'https://www.google.com')" ""
   '';
 
   installPhase = ''

pkgs/applications/misc/calcurse/default.nix

@@ -16,7 +16,7 @@ stdenv.mkDerivation rec {
   pythonEnv = python3Packages.python.buildEnv.override {
     extraLibs = [ python3Packages.httplib2 ];
   };
-  propogatedBuildInputs = [ pythonEnv ];
+  propagatedBuildInputs = [ pythonEnv ];
 
   postInstall = ''
     substituteInPlace $out/bin/calcurse-caldav --replace /usr/bin/python3 ${pythonEnv}/bin/python3

pkgs/applications/misc/calibre/default.nix

@@ -5,12 +5,12 @@
 }:
 
 stdenv.mkDerivation rec {
-  version = "3.16.0";
+  version = "3.17.0";
   name = "calibre-${version}";
 
   src = fetchurl {
     url = "https://download.calibre-ebook.com/${version}/${name}.tar.xz";
-    sha256 = "0dsnn974lfd6xbnyjhgxl2hd07kjhm1w9plqi28mx8nqa8bwqira";
+    sha256 = "1w6hw1s0d4daa4q2ykzhxdndiq61l8z7ls7rxh7k7p62ia0i5sxp";
   };
 
   patches = [

pkgs/applications/misc/haxor-news/default.nix

@@ -20,6 +20,8 @@ buildPythonApplication rec {
     six
   ];
 
+  doCheck = false;
+
   checkInputs = [ mock ];
 
   checkPhase = ''

pkgs/applications/misc/hstr/default.nix

@@ -1,15 +1,12 @@
 { stdenv, fetchurl, readline, ncurses }:
 
-let
-  version = "1.23";
-in
 stdenv.mkDerivation rec {
-
+  name    = "hstr-${version}";
-  name = "hstr-${version}";
+  version = "1.24";
 
   src = fetchurl {
     url = "https://github.com/dvorka/hstr/releases/download/${version}/hh-${version}-src.tgz";
-    sha256 = "1hnira256p7sdilx34mnkji7gi2jcl98zz4izqxsqmnzj8ghhzkv";
+    sha256 = "0w8is777fwq6r17zhl9xwrv9f7vanllzjiasx1pg6pxvppq7rh0x";
   };
 
   buildInputs = [ readline ncurses ];

pkgs/applications/misc/khard/default.nix

@@ -1,13 +1,13 @@
 { stdenv, fetchurl, fetchFromGitHub, glibcLocales, python3Packages }:
 
 python3Packages.buildPythonApplication rec {
-  version = "0.11.4";
+  version = "0.12.2";
   name = "khard-${version}";
   namePrefix = "";
 
   src = fetchurl {
     url = "https://github.com/scheibler/khard/archive/v${version}.tar.gz";
-    sha256 = "1hngg3z5cdjny7wdf2mf9wv35ffx7ivpq6mx7kgqf40fr5905l0r";
+    sha256 = "0lxcvzmafpvqcifgq2xjh1ca07z0vhihn5jnw8zrpmsqdc9p6b4j";
   };
 
   # setup.py reads the UTF-8 encoded readme.
@@ -19,7 +19,9 @@ python3Packages.buildPythonApplication rec {
     configobj
     vobject
     argparse
-    pyyaml
+    ruamel_yaml
+    ruamel_base
+    unidecode
   ];
 
   # Fails; but there are no tests anyway.

pkgs/applications/misc/madonctl/default.nix

@@ -26,6 +26,6 @@ buildGoPackage rec {
     homepage = https://github.com/McKael/madonctl;
     license = licenses.mit;
     platforms = platforms.unix;
-    maintainers = with maintainers; [ matthiasbeyer ];
+    maintainers = with maintainers; [ ];
   };
 }

pkgs/applications/misc/mwic/default.nix

@@ -1,12 +1,12 @@
 { stdenv, fetchurl, pythonPackages }:
 
 stdenv.mkDerivation rec {
-  version = "0.7.3";
+  version = "0.7.4";
   name = "mwic-${version}";
 
   src = fetchurl {
     url = "https://github.com/jwilk/mwic/releases/download/${version}/${name}.tar.gz";
-    sha256 = "0baa2pnaba954k169p9rpzc66mhz9zqdd3lz9q95rp9dgygvchzn";
+    sha256 = "0c0xk7wx4vaamlry6srdixw1q6afmqznvxdzcg1skr0qjypw5i5q";
   };
 
   makeFlags=["PREFIX=\${out}"];

pkgs/applications/misc/nnn/default.nix

@@ -4,13 +4,13 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   name = "nnn-${version}";
-  version = "1.5";
+  version = "1.6";
 
   src = fetchFromGitHub {
     owner = "jarun";
     repo = "nnn";
     rev = "v${version}";
-    sha256 = "10gcbklh0cp12293lzlwcplj0in90p95x4fyvg1smg4cxamkibvn";
+    sha256 = "1yl4k39wkh2ins7fz585kc4cg6fagiswgqkh5g36db1bka3v1kn0";
   };
 
   configFile = optionalString (conf!=null) (builtins.toFile "nnn.h" conf);

pkgs/applications/misc/sc-im/default.nix

@@ -1,14 +1,14 @@
 { stdenv, fetchFromGitHub, yacc, ncurses, libxml2, libzip, libxls, pkgconfig }:
 
 stdenv.mkDerivation rec {
-  version = "0.6.0";
+  version = "0.7.0";
   name = "sc-im-${version}";
 
   src = fetchFromGitHub {
     owner = "andmarti1424";
     repo = "sc-im";
     rev = "v${version}";
-    sha256 = "02ak3b0vv72mv38cwvy7qp0y6hgrzcgahkv1apgks3drpnz5w1sj";
+    sha256 = "0xi0n9qzby012y2j7hg4fgcwyly698sfi4i9gkvy0q682jihprbk";
   };
 
   nativeBuildInputs = [ pkgconfig ];
@@ -17,6 +17,8 @@ stdenv.mkDerivation rec {
   buildPhase = ''
     cd src
 
+    sed 's/LDLIBS += -lm/& -lncurses/' -i Makefile
+
     sed -e "\|^prefix  = /usr/local|   s|/usr/local|$out|" \
         -e "\|^#LDLIBS += -lxlsreader| s|^#||            " \
         -e "\|^#CFLAGS += -DXLS|       s|^#||            " \

pkgs/applications/misc/sigal/default.nix

@@ -1,12 +1,12 @@
 { lib, buildPythonApplication, fetchPypi, pythonPackages }:
 
 buildPythonApplication rec {
-  version = "1.3.0";
+  version = "1.4.0";
   pname   = "sigal";
 
   src = fetchPypi {
     inherit version pname;
-    sha256 = "0ycyrap4rc0yrjagi5c5fs5gpw9whvkli656syfpj99dq1q9q1d0";
+    sha256 = "0da0n8jhjp2swr18zga87xc77r8c7qwqf5sp222ph9sn3yyyc35i";
   };
 
   buildInputs = with pythonPackages; [ pytest ];

pkgs/applications/misc/timewarrior/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "timewarrior-${version}";
-  version = "1.1.0";
+  version = "1.1.1";
 
   enableParallelBuilding = true;
 
   src = fetchurl {
     url = "https://taskwarrior.org/download/timew-${version}.tar.gz";
-    sha256 = "0jnwj8lflr6nlch2j2hkmgpdqq3zbdd2sfpi5iwiabljk25v9iq9";
+    sha256 = "1jfcfzdwk5qqhxznj1bgy0sx3lnp3z5lqr9kch9a7iazwmi9lz8z";
   };
 
   nativeBuildInputs = [ cmake ];
@@ -17,7 +17,7 @@ stdenv.mkDerivation rec {
     description = "A command-line time tracker";
     homepage = https://tasktools.org/projects/timewarrior.html;
     license = licenses.mit;
-    maintainers = with maintainers; [ matthiasbeyer ];
+    maintainers = with maintainers; [ matthiasbeyer mrVanDalo ];
     platforms = platforms.linux;
   };
 }

pkgs/applications/networking/instant-messengers/dino/default.nix

@@ -13,13 +13,13 @@
  }:
 
 stdenv.mkDerivation rec {
-  name = "dino-unstable-2017-12-03";
+  name = "dino-unstable-2018-02-11";
 
   src = fetchFromGitHub {
     owner = "dino";
     repo = "dino";
-    rev = "cee39b0117c1620d852d50c14ca6f06db4e2956b";
+    rev = "5436d716c0f508eb8ab70f322da862f996ce421e";
-    sha256 = "15cm6y2rgj6fcw8sciygd1wvcw7k9fgf69ji1abfwybzydflj7ny";
+    sha256 = "0yxkhl9xm5f0j2i9vxgyabpa5fwja0329fmg0878mqsm89nzz3am";
     fetchSubmodules = true;
   };
 

pkgs/applications/networking/p2p/qbittorrent/default.nix

@@ -10,11 +10,11 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   name = "qbittorrent-${version}";
-  version = "4.0.3";
+  version = "4.0.4";
 
   src = fetchurl {
     url = "mirror://sourceforge/qbittorrent/${name}.tar.xz";
-    sha256 = "1lkbrvpzdfbqwilj09a9vraai7pz6dh999w4vl51mj1adm7bh0ws";
+    sha256 = "13sw0sdw2agm49plp9xvkg6wva274drpvgz76dqj4j2kfxx9s2jk";
   };
 
   nativeBuildInputs = [ pkgconfig which ];

pkgs/applications/office/beancount/bean-add.nix

@@ -1,13 +1,13 @@
 { stdenv, fetchFromGitHub, python3Packages }:
 
 stdenv.mkDerivation rec {
-  name = "bean-add-2017-10-31";
+  name = "bean-add-2018-01-08";
 
   src = fetchFromGitHub {
     owner = "simon-v";
     repo = "bean-add";
-    rev = "9ac64272a17e76f8292bd94deb5aee45c14130d2";
+    rev = "660c657f295b019d8dbc26375924eb17bf654341";
-    sha256 = "1vcwbbi2jsf87yq8f2hyf7nz9br1973sb20qjnsx5fxlmcpn47jh";
+    sha256 = "0vzff2hdng8ybwd5frflhxpak0yqg0985p1dy7vpvhr8kbqqzwdz";
   };
 
   propagatedBuildInputs = with python3Packages; [ python ];

pkgs/applications/office/spice-up/default.nix

@@ -16,13 +16,13 @@
 
 stdenv.mkDerivation rec {
   name = "spice-up-${version}";
-  version = "1.2.1";
+  version = "1.3.2";
 
   src = fetchFromGitHub {
     owner = "Philip-Scott";
     repo = "Spice-up";
     rev = version;
-    sha256 = "0cbyhi6d99blv33183j6nakzcqxz5hqy9ijykiasbmdycfd5q0fh";
+    sha256 = "087cdi7na93pgz7vf046h94v5ydvpiccpwhllq85ix8g4pa5rp85";
   };
   USER = "nix-build-user";
 

pkgs/applications/science/math/bcal/default.nix

@@ -0,0 +1,33 @@
+{ stdenv, fetchFromGitHub, python3Packages }:
+
+with stdenv.lib;
+
+stdenv.mkDerivation rec {
+  name = "bcal-${version}";
+  version = "1.7";
+
+  src = fetchFromGitHub {
+    owner = "jarun";
+    repo = "bcal";
+    rev = "v${version}";
+    sha256 = "08cqp2jysvy743gmwpzkbqhybsb49n65r63z3if53m3y59qg4aw8";
+  };
+
+  nativeBuildInputs = [ python3Packages.pytest ];
+
+  doCheck = true;
+  checkPhase = ''
+    python3 -m pytest test.py
+  '';
+
+  makeFlags = [ "CC=cc" ];
+  installFlags = [ "DESTDIR=$(out)" "PREFIX=" ];
+
+  meta = {
+    description = "Storage conversion and expression calculator";
+    homepage = https://github.com/jarun/bcal;
+    license = licenses.gpl3;
+    platforms = [ "x86_64-darwin" "x86_64-linux" ];
+    maintainers = with maintainers; [ jfrankenau ];
+  };
+}

pkgs/build-support/build-bazel-package/default.nix

@@ -0,0 +1,78 @@
+{ stdenv, bazel }:
+
+args@{ name, bazelFlags ? [], bazelTarget, buildAttrs, fetchAttrs, ... }:
+
+let
+  fArgs = removeAttrs args [ "buildAttrs" "fetchAttrs" ];
+  fBuildAttrs = fArgs // buildAttrs;
+  fFetchAttrs = fArgs // removeAttrs fetchAttrs [ "sha256" ];
+
+in stdenv.mkDerivation (fBuildAttrs // {
+  inherit name bazelFlags bazelTarget;
+
+  deps = stdenv.mkDerivation (fFetchAttrs // {
+    name = "${name}-deps";
+    inherit bazelFlags bazelTarget;
+
+    nativeBuildInputs = fFetchAttrs.nativeBuildInputs or [] ++ [ bazel ];
+
+    preHook = fFetchAttrs.preHook or "" + ''
+      export bazelOut="$NIX_BUILD_TOP/output"
+      export HOME="$NIX_BUILD_TOP"
+    '';
+
+    buildPhase = fFetchAttrs.buildPhase or ''
+      runHook preBuild
+
+      bazel --output_base="$bazelOut" fetch $bazelFlags $bazelTarget
+
+      runHook postBuild
+    '';
+
+    installPhase = fFetchAttrs.installPhase or ''
+      runHook preInstall
+
+      # Patching markers to make them deterministic
+      for i in $bazelOut/external/\@*.marker; do
+        sed -i 's, -\?[0-9][0-9]*$, 1,' "$i"
+      done
+      # Patching symlinks to remove build directory reference
+      find $bazelOut/external -type l | while read symlink; do
+        ln -sf $(readlink "$symlink" | sed "s,$NIX_BUILD_TOP,NIX_BUILD_TOP,") "$symlink"
+      done
+
+      cp -r $bazelOut/external $out
+
+      runHook postInstall
+    '';
+
+    dontFixup = true;
+    outputHashMode = "recursive";
+    outputHashAlgo = "sha256";
+    outputHash = fetchAttrs.sha256;
+  });
+
+  nativeBuildInputs = fBuildAttrs.nativeBuildInputs or [] ++ [ (bazel.override { enableNixHacks = true; }) ];
+
+  preHook = fBuildAttrs.preHook or "" + ''
+    export bazelOut="$NIX_BUILD_TOP/output"
+    export HOME="$NIX_BUILD_TOP"
+  '';
+
+  preConfigure = ''
+    mkdir -p $bazelOut/external
+    cp -r $deps/* $bazelOut/external
+    chmod -R +w $bazelOut
+    find $bazelOut -type l | while read symlink; do
+      ln -sf $(readlink "$symlink" | sed "s,NIX_BUILD_TOP,$NIX_BUILD_TOP,") "$symlink"
+    done
+  '' + fBuildAttrs.preConfigure or "";
+
+  buildPhase = fBuildAttrs.buildPhase or ''
+    runHook preBuild
+
+    bazel --output_base="$bazelOut" build -j $NIX_BUILD_CORES $bazelFlags $bazelTarget
+
+    runHook postBuild
+  '';
+})

pkgs/desktops/gnome-3/extensions/battery-status/default.nix

@@ -0,0 +1,27 @@
+{ stdenv, fetchFromGitHub }:
+
+stdenv.mkDerivation rec {
+  name = "gnome-shell-extension-battery-status-${version}";
+  version = "6";
+
+  src = fetchFromGitHub {
+    owner = "milliburn";
+    repo = "gnome-shell-extension-battery_status";
+    rev = "v${version}";
+    sha256 = "1w83h863mzffjnmk322xq90qf3y9dzay1w9yw5r0qnbsq1ljl8p4";
+  };
+
+  uuid = "battery_status@milliburn.github.com";
+
+  installPhase = ''
+    mkdir -p $out/share/gnome-shell/extensions
+    cp -r ${uuid} $out/share/gnome-shell/extensions/
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Configurable lightweight battery charge indicator and autohider";
+    license = licenses.gpl2;
+    maintainers = with maintainers; [ jonafato ];
+    homepage = https://github.com/milliburn/gnome-shell-extension-battery_status;
+  };
+}

pkgs/desktops/gnome-3/extensions/dash-to-dock/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "gnome-shell-dash-to-dock-${version}";
-  version = "v61";
+  version = "v62";
 
   src = fetchFromGitHub {
     owner = "micheleg";
     repo = "dash-to-dock";
     rev = "extensions.gnome.org-" + version;
-    sha256 = "152xzhal3wr40j0pv03v0gg20054n5hqqy3s10bkj2a0x830pgjk";
+    sha256 = "1kmf7vxhd1c1zgaim1pwmcmsg0kffng7hcl5gfcy5qb5yvb4dy5d";
   };
 
   nativeBuildInputs = [

pkgs/desktops/gnome-3/extensions/taskwhisperer/default.nix

@@ -0,0 +1,43 @@
+{ stdenv, substituteAll, fetchFromGitHub, taskwarrior }:
+
+stdenv.mkDerivation rec {
+  name = "gnome-shell-extension-taskwhisperer-${version}";
+  version = "11";
+
+  src = fetchFromGitHub {
+    owner = "cinatic";
+    repo = "taskwhisperer";
+    rev = "v${version}";
+    sha256 = "1g1301rwnfg5jci78bjpmgxrn78ra80m1zp2inhfsm8jssr1i426";
+  };
+
+  buildInputs = [ taskwarrior ];
+
+  uuid = "taskwhisperer-extension@infinicode.de";
+
+  installPhase = ''
+    mkdir -p $out/share/gnome-shell/extensions/${uuid}
+    cp *.js $out/share/gnome-shell/extensions/${uuid}
+    cp -r extra $out/share/gnome-shell/extensions/${uuid}
+    cp -r icons $out/share/gnome-shell/extensions/${uuid}
+    cp -r locale $out/share/gnome-shell/extensions/${uuid}
+    cp -r schemas $out/share/gnome-shell/extensions/${uuid}
+    cp metadata.json $out/share/gnome-shell/extensions/${uuid}
+    cp settings.ui $out/share/gnome-shell/extensions/${uuid}
+    cp stylesheet.css $out/share/gnome-shell/extensions/${uuid}
+  '';
+
+  patches = [
+    (substituteAll {
+      src = ./fix-paths.patch;
+      task = "${taskwarrior}/bin/task";
+    })
+  ];
+
+  meta = with stdenv.lib; {
+    description = "GNOME Shell TaskWarrior GUI";
+    license = licenses.gpl3Plus;
+    maintainers = with maintainers; [ jonafato ];
+    homepage = https://github.com/cinatic/taskwhisperer;
+  };
+}

pkgs/desktops/gnome-3/extensions/taskwhisperer/fix-paths.patch

@@ -0,0 +1,81 @@
+diff --git a/extra/create.sh b/extra/create.sh
+index a69e369..35d5ea1 100755
+--- a/extra/create.sh
++++ b/extra/create.sh
+@@ -1 +1 @@
+-bash -c "task add $1"
++bash -c "@task@ add $1"
+diff --git a/extra/modify.sh b/extra/modify.sh
+index 7964a26..8edd21b 100755
+--- a/extra/modify.sh
++++ b/extra/modify.sh
+@@ -1 +1 @@
+-bash -c "task $1 modify $2"
++bash -c "@task@ $1 modify $2"
+diff --git a/taskService.js b/taskService.js
+index dea40d8..ff35a80 100644
+--- a/taskService.js
++++ b/taskService.js
+@@ -186,7 +186,7 @@ const TaskService = new Lang.Class({
+ 
+         let project = projectName ? "project:" + projectName : "";
+ 
+-        let command = ['task', 'rc.json.array=on', status, project, 'export'];
++        let command = ['@task@', 'rc.json.array=on', status, project, 'export'];
+         let reader = new SpawnReader.SpawnReader();
+ 
+         let buffer = "";
+@@ -227,7 +227,7 @@ const TaskService = new Lang.Class({
+                 break;
+         }
+ 
+-        let shellProc = Gio.Subprocess.new(['task', status, 'projects'], Gio.SubprocessFlags.STDOUT_PIPE);
++        let shellProc = Gio.Subprocess.new(['@task@', status, 'projects'], Gio.SubprocessFlags.STDOUT_PIPE);
+ 
+         shellProc.wait_async(null, function(obj, result){
+             let shellProcExited = true;
+@@ -274,7 +274,7 @@ const TaskService = new Lang.Class({
+             return;
+         }
+ 
+-        let shellProc = Gio.Subprocess.new(['task', taskID.toString(), 'done'], Gio.SubprocessFlags.STDOUT_PIPE);
++        let shellProc = Gio.Subprocess.new(['@task@', taskID.toString(), 'done'], Gio.SubprocessFlags.STDOUT_PIPE);
+ 
+         shellProc.wait_async(null, function(obj, result){
+             let shellProcExited = true;
+@@ -307,7 +307,7 @@ const TaskService = new Lang.Class({
+             return;
+         }
+ 
+-        let shellProc = Gio.Subprocess.new(['task', 'modify', taskID.toString(), 'status:pending'], Gio.SubprocessFlags.STDOUT_PIPE);
++        let shellProc = Gio.Subprocess.new(['@task@', 'modify', taskID.toString(), 'status:pending'], Gio.SubprocessFlags.STDOUT_PIPE);
+ 
+         shellProc.wait_async(null, function(obj, result){
+             let shellProcExited = true;
+@@ -339,7 +339,7 @@ const TaskService = new Lang.Class({
+         {
+             return;
+         }
+-        let shellProc = Gio.Subprocess.new(['task', taskID.toString(), 'start'], Gio.SubprocessFlags.STDOUT_PIPE);
++        let shellProc = Gio.Subprocess.new(['@task@', taskID.toString(), 'start'], Gio.SubprocessFlags.STDOUT_PIPE);
+         shellProc.wait_async(null, function(obj, result){
+             let shellProcExited = true;
+             shellProc.wait_finish(result);
+@@ -369,7 +369,7 @@ const TaskService = new Lang.Class({
+         {
+             return;
+         }
+-        let shellProc = Gio.Subprocess.new(['task', taskID.toString(), 'stop'], Gio.SubprocessFlags.STDOUT_PIPE);
++        let shellProc = Gio.Subprocess.new(['@task@', taskID.toString(), 'stop'], Gio.SubprocessFlags.STDOUT_PIPE);
+         shellProc.wait_async(null, function(obj, result){
+             let shellProcExited = true;
+             shellProc.wait_finish(result);
+@@ -468,7 +468,7 @@ const TaskService = new Lang.Class({
+ 
+         try
+         {
+-            shellProc = Gio.Subprocess.new(['task', 'sync'], Gio.SubprocessFlags.STDOUT_PIPE);
++            shellProc = Gio.Subprocess.new(['@task@', 'sync'], Gio.SubprocessFlags.STDOUT_PIPE);
+         }
+         catch(err)
+         {

pkgs/desktops/plasma-5/fetch.sh

@@ -1 +1 @@
-WGET_ARGS=( https://download.kde.org/stable/plasma/5.12.1/ -A '*.tar.xz' )
+WGET_ARGS=( https://download.kde.org/stable/plasma/5.12.2/ -A '*.tar.xz' )

pkgs/desktops/plasma-5/srcs.nix

@@ -3,355 +3,355 @@
 
 {
   bluedevil = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/bluedevil-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/bluedevil-5.12.2.tar.xz";
-      sha256 = "0qdqbykphala7np333l3a0r94nrd8zg2dh7iqw6k7mc1mxkh92b7";
+      sha256 = "11xwyawcfkxhdzcgj4nkj1vlp6zn53k9dl3c4llpj1z08jc2vdpj";
-      name = "bluedevil-5.12.1.tar.xz";
+      name = "bluedevil-5.12.2.tar.xz";
     };
   };
   breeze = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/breeze-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/breeze-5.12.2.tar.xz";
-      sha256 = "0hi3z4jrs6a0sm58726v6v0hvb0v313qihi06mm6fayiijh0s5zs";
+      sha256 = "1vx03wi4m6ly6sw7cznhzg96rkxbn2mxsn9719pra616axl6c00s";
-      name = "breeze-5.12.1.tar.xz";
+      name = "breeze-5.12.2.tar.xz";
     };
   };
   breeze-grub = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/breeze-grub-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/breeze-grub-5.12.2.tar.xz";
-      sha256 = "0i7w9i2m9sxywag46dhr22ksw9zb2cjm6vk2019m3kpg9pq8yx68";
+      sha256 = "1a76xbnrbd18cd6p0n94fixc7jmd8vdnzqbi9pbi3wj82cpp95xq";
-      name = "breeze-grub-5.12.1.tar.xz";
+      name = "breeze-grub-5.12.2.tar.xz";
     };
   };
   breeze-gtk = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/breeze-gtk-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/breeze-gtk-5.12.2.tar.xz";
-      sha256 = "0bal2zf2xg32hxbabf4kzlm2lhir9sn67nfzrf9zb0hb0b7ya01d";
+      sha256 = "1811r8gqhrdf5b4a1k94cid1whcd8g6h2mrms6qm40brzj8qn9w0";
-      name = "breeze-gtk-5.12.1.tar.xz";
+      name = "breeze-gtk-5.12.2.tar.xz";
     };
   };
   breeze-plymouth = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/breeze-plymouth-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/breeze-plymouth-5.12.2.tar.xz";
-      sha256 = "0535igi9ms4dyz25sygkrmg310s90vy3srx5qdrdzfinah5m8qz7";
+      sha256 = "1n96iysljakhhkw9wavhbvj29zlkkajgwpxs6v5ny4iifv9gn3cv";
-      name = "breeze-plymouth-5.12.1.tar.xz";
+      name = "breeze-plymouth-5.12.2.tar.xz";
     };
   };
   discover = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/discover-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/discover-5.12.2.tar.xz";
-      sha256 = "07jdx01qz9339w652ixk0hjb25s1bf4rc5gs872i0hv77vxy161b";
+      sha256 = "1hkbannyrw1c6h45c8s669d4hg6irc991hjlg0mm31lnpa8lb51v";
-      name = "discover-5.12.1.tar.xz";
+      name = "discover-5.12.2.tar.xz";
     };
   };
   drkonqi = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/drkonqi-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/drkonqi-5.12.2.tar.xz";
-      sha256 = "056qqhp8jh2v9jrghdb2n2ljq3s4vyrfdfligkvxvviwrd1r3wyk";
+      sha256 = "0dw9axkhp0cgw276cpfp4ddf5g9s2ccz6q43pk68fvphbz7m2wqm";
-      name = "drkonqi-5.12.1.tar.xz";
+      name = "drkonqi-5.12.2.tar.xz";
     };
   };
   kactivitymanagerd = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/kactivitymanagerd-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/kactivitymanagerd-5.12.2.tar.xz";
-      sha256 = "0hfkcy27mpick1sfwvw4x6323bsq9ks2ac066560wm5xy6svhmid";
+      sha256 = "1l6ar094y272fjxzj6qpapz4g5mfbf82z80zygmrs0cizpz1xv84";
-      name = "kactivitymanagerd-5.12.1.tar.xz";
+      name = "kactivitymanagerd-5.12.2.tar.xz";
     };
   };
   kde-cli-tools = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/kde-cli-tools-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/kde-cli-tools-5.12.2.tar.xz";
-      sha256 = "0l6bky92j1hpgn4ikfxwrpsrcvx673g8vk2n3lff1cyy4j0ayg6v";
+      sha256 = "1jd7r49i24psrx59n0djbbxbv8c3wchiabgrv4x4dq6nsqygh6vc";
-      name = "kde-cli-tools-5.12.1.tar.xz";
+      name = "kde-cli-tools-5.12.2.tar.xz";
     };
   };
   kdecoration = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/kdecoration-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/kdecoration-5.12.2.tar.xz";
-      sha256 = "08x87kcgphb1jknyp3fsimgb2al919s039kkhimijmm0n1z16fiy";
+      sha256 = "1whngfld0nlw3mbf70khvqiqqskfglnn3dzx5zg0l14xv0kips79";
-      name = "kdecoration-5.12.1.tar.xz";
+      name = "kdecoration-5.12.2.tar.xz";
     };
   };
   kde-gtk-config = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/kde-gtk-config-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/kde-gtk-config-5.12.2.tar.xz";
-      sha256 = "1a10nxivnfnm9634z98r6jgp887vf1zynyp9hi75pw9jbm4zf1kw";
+      sha256 = "1ncyj665hra8bj4nk2idpjq0lm72dr3r467ddx6k0n63arvfmxm4";
-      name = "kde-gtk-config-5.12.1.tar.xz";
+      name = "kde-gtk-config-5.12.2.tar.xz";
     };
   };
   kdeplasma-addons = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/kdeplasma-addons-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/kdeplasma-addons-5.12.2.tar.xz";
-      sha256 = "123daj7q8jgw6zsq9c0mdd28qf9r20hlbzs71zz48r7736njaw98";
+      sha256 = "00x0jd8jw77fh5qy5z9xldw3m27il9mamq0fl8f4vmny7y8hqg2k";
-      name = "kdeplasma-addons-5.12.1.tar.xz";
+      name = "kdeplasma-addons-5.12.2.tar.xz";
     };
   };
   kgamma5 = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/kgamma5-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/kgamma5-5.12.2.tar.xz";
-      sha256 = "0cgkrc4b0x50ih4x0zfvcydnhqryd37d5sqj3p0k3b6p2r9mnqkb";
+      sha256 = "1xhn8dw0595f48qbvj304agkg34y2pr0czvkpl1ahhzsndgjkxjs";
-      name = "kgamma5-5.12.1.tar.xz";
+      name = "kgamma5-5.12.2.tar.xz";
     };
   };
   khotkeys = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/khotkeys-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/khotkeys-5.12.2.tar.xz";
-      sha256 = "1acjg51ikp9gdabdjbg6i9znxrfs11md9zhi7rls9b5p06l38ckj";
+      sha256 = "1hsnasx67vf0jdxnmlvhm86ykvjc89zbr8rdgr1ixq6iy543c1ry";
-      name = "khotkeys-5.12.1.tar.xz";
+      name = "khotkeys-5.12.2.tar.xz";
     };
   };
   kinfocenter = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/kinfocenter-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/kinfocenter-5.12.2.tar.xz";
-      sha256 = "1wb7gag22ssaril3rl5r3y62rszvihrr4y1ph7nmhrg14sifg16k";
+      sha256 = "0sagy72x94nv1zxvllkzgmln2j04bh8cib4fx3zsqfn572wncjqi";
-      name = "kinfocenter-5.12.1.tar.xz";
+      name = "kinfocenter-5.12.2.tar.xz";
     };
   };
   kmenuedit = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/kmenuedit-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/kmenuedit-5.12.2.tar.xz";
-      sha256 = "13liv9qj8h4b17h8864bhxqahjwaz7bbh1gx53mhkbn59g5kh39d";
+      sha256 = "1ygwv1s9zgd6qh3gd7537dgjil8h3i21i5wwn99wynbifq0w6ikv";
-      name = "kmenuedit-5.12.1.tar.xz";
+      name = "kmenuedit-5.12.2.tar.xz";
     };
   };
   kscreen = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/kscreen-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/kscreen-5.12.2.tar.xz";
-      sha256 = "18v0gzv4j9w0jyf05ibi5iwmw1wp231q7hi098sps614hz38zmh2";
+      sha256 = "1scmaydn4fypjizfm7l71vszx725vgbgsg7hpnv2dgwqrf98kl9v";
-      name = "kscreen-5.12.1.tar.xz";
+      name = "kscreen-5.12.2.tar.xz";
     };
   };
   kscreenlocker = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/kscreenlocker-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/kscreenlocker-5.12.2.tar.xz";
-      sha256 = "1s3k51k05g3nhq1c32631ryr754zk40fnrw4zi2x69bvx3mj40hq";
+      sha256 = "0v8qyjkmaxq711dw1iw12j38aswfr4qccvzkm3qc1gvfjs1vl0gn";
-      name = "kscreenlocker-5.12.1.tar.xz";
+      name = "kscreenlocker-5.12.2.tar.xz";
     };
   };
   ksshaskpass = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/ksshaskpass-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/ksshaskpass-5.12.2.tar.xz";
-      sha256 = "1zj7ka6wfisjbx7lbpw7acjdgr590596zgy4al7if4rznva1zsh7";
+      sha256 = "1b70jbdm3c4agk66v5yvzvzdlwp0xn8lmxn3zyk1n280xgqr2z1m";
-      name = "ksshaskpass-5.12.1.tar.xz";
+      name = "ksshaskpass-5.12.2.tar.xz";
     };
   };
   ksysguard = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/ksysguard-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/ksysguard-5.12.2.tar.xz";
-      sha256 = "1dh84wzn1iyc59yvzqjah16rp05wl6cf3lgiiycza09d9k4m0j5m";
+      sha256 = "0k8ziqbvm8igczij3a26jyc0i7hwiqfv0072kywz76m9pfsd3lp7";
-      name = "ksysguard-5.12.1.tar.xz";
+      name = "ksysguard-5.12.2.tar.xz";
     };
   };
   kwallet-pam = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/kwallet-pam-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/kwallet-pam-5.12.2.tar.xz";
-      sha256 = "0x7w945ifmdczynyr45xid8ymq7m0djapacb815bgy7xzr3y3glm";
+      sha256 = "0xg01iianf0ygpjf971i3fln0gn44gw83gxhplwjv3q5dn79plrd";
-      name = "kwallet-pam-5.12.1.tar.xz";
+      name = "kwallet-pam-5.12.2.tar.xz";
     };
   };
   kwayland-integration = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/kwayland-integration-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/kwayland-integration-5.12.2.tar.xz";
-      sha256 = "00fncsp9ihg9f9n9a63rnx6n7jfld6bya3wymppwxnzxp1awx8s0";
+      sha256 = "1s4vdsv8s72nplmk9395zfsp4fars14n2rkgqfp95b7ii76519nn";
-      name = "kwayland-integration-5.12.1.tar.xz";
+      name = "kwayland-integration-5.12.2.tar.xz";
     };
   };
   kwin = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/kwin-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/kwin-5.12.2.tar.xz";
-      sha256 = "13wdqhyhnnk64bd1vyxk7rm6bkn7z2cpcxigqdyy3iqkkpz16mfy";
+      sha256 = "0lnyikmjsxjjbz7mrf421y1lw0vjqsri66dsjv2wldlbgifp94kw";
-      name = "kwin-5.12.1.tar.xz";
+      name = "kwin-5.12.2.tar.xz";
     };
   };
   kwrited = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/kwrited-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/kwrited-5.12.2.tar.xz";
-      sha256 = "1blbv41mm74bhp1fkdc0f24pk990xr8ppmwnif9g5ygsisw6mwbl";
+      sha256 = "1n20g92h2hgcgp9qdxifp55acbkgh09chqz0p8qrj39vw5w5abv4";
-      name = "kwrited-5.12.1.tar.xz";
+      name = "kwrited-5.12.2.tar.xz";
     };
   };
   libkscreen = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/libkscreen-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/libkscreen-5.12.2.tar.xz";
-      sha256 = "01j9rvhsgn57jqqhznqwpmq6x2jrfrkv9svhch3akp9qz580wzjf";
+      sha256 = "1hv180ac97m1i47c2bapv5bz149i8p55qyfxrka7fivhzszsa8x0";
-      name = "libkscreen-5.12.1.tar.xz";
+      name = "libkscreen-5.12.2.tar.xz";
     };
   };
   libksysguard = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/libksysguard-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/libksysguard-5.12.2.tar.xz";
-      sha256 = "0xfbh0fndld6ab12770fj3szfc66zgfzh0al36lif8rvdgyqymfl";
+      sha256 = "1nf847lwx88f8g0bknaxzn0q6cvs2xn1cz6ch7qrblg0a8v3ig19";
-      name = "libksysguard-5.12.1.tar.xz";
+      name = "libksysguard-5.12.2.tar.xz";
     };
   };
   milou = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/milou-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/milou-5.12.2.tar.xz";
-      sha256 = "1k6v0lbadvmclw6mpq2xdh3w4scjjhzj6jsgq7v3g27mjf4pdjc2";
+      sha256 = "1sick71qd04shs34nlsplln3zpgvrbal4jlklm4k094w487fvcc8";
-      name = "milou-5.12.1.tar.xz";
+      name = "milou-5.12.2.tar.xz";
     };
   };
   oxygen = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/oxygen-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/oxygen-5.12.2.tar.xz";
-      sha256 = "1pmw26aihk63zscxzwacp6yfqg1siamvjcgc4b81xafcby5w1xyz";
+      sha256 = "03g0pwk5n6idgrrm0g4hfvyls7h8by6lz6rp7h1i9ibpaph3czmy";
-      name = "oxygen-5.12.1.tar.xz";
+      name = "oxygen-5.12.2.tar.xz";
     };
   };
   plasma-desktop = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/plasma-desktop-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/plasma-desktop-5.12.2.tar.xz";
-      sha256 = "1mjwjvv0dmvvpghckqw56s2khdxbgqvs0n68c06v56hcnsvxpadw";
+      sha256 = "0wymhk1wzvx3ihq7gn4zkisp5x1n5m62fk1vmg5il75hn69qw4g5";
-      name = "plasma-desktop-5.12.1.tar.xz";
+      name = "plasma-desktop-5.12.2.tar.xz";
     };
   };
   plasma-integration = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/plasma-integration-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/plasma-integration-5.12.2.tar.xz";
-      sha256 = "0ljdwfw2b8nk5nsxhhhx4vh9mrdvchrzr39y6wx7yq0hk8ldspkf";
+      sha256 = "0hyxn51vjdbkw9kj5nqp7lr1myjpnlp5ri01jwg43v5h44mq6k08";
-      name = "plasma-integration-5.12.1.tar.xz";
+      name = "plasma-integration-5.12.2.tar.xz";
     };
   };
   plasma-nm = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/plasma-nm-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/plasma-nm-5.12.2.tar.xz";
-      sha256 = "023v1v8c6zqddnms82xyym99x7faxf3g304q8zd5hk1xmwxfydmq";
+      sha256 = "0wlp0wqbcbnmclfvhii50sds1ij4la3wni9987xym7qrc8bxm43x";
-      name = "plasma-nm-5.12.1.tar.xz";
+      name = "plasma-nm-5.12.2.tar.xz";
     };
   };
   plasma-pa = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/plasma-pa-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/plasma-pa-5.12.2.tar.xz";
-      sha256 = "19qfmrqsxf4h59ayy2cr8qixk04wlh9gg5f6aqlrbd81611pnmss";
+      sha256 = "119gcgx8rrihhmxzfp7wj3v8q4vwzk989w9qn5b2y72vyvllbln7";
-      name = "plasma-pa-5.12.1.tar.xz";
+      name = "plasma-pa-5.12.2.tar.xz";
     };
   };
   plasma-sdk = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/plasma-sdk-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/plasma-sdk-5.12.2.tar.xz";
-      sha256 = "11irkik3ppvcxfv4cd4jyim0qrr0i8y1911vw9h8gppg4bihiibr";
+      sha256 = "0as3718rkcal8va6w1ip2prsvrp6b218r33hmhdkdbbshnx40csv";
-      name = "plasma-sdk-5.12.1.tar.xz";
+      name = "plasma-sdk-5.12.2.tar.xz";
     };
   };
   plasma-tests = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/plasma-tests-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/plasma-tests-5.12.2.tar.xz";
-      sha256 = "1vk4c61839ggwdjxnmv6f5l5rcml4q6sjhrxykw9sx2fk43b7aqc";
+      sha256 = "1336kj277hrbgi5dx6z19dp8fgxhifnapd0jas4lq8z06gn6dh40";
-      name = "plasma-tests-5.12.1.tar.xz";
+      name = "plasma-tests-5.12.2.tar.xz";
     };
   };
   plasma-vault = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/plasma-vault-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/plasma-vault-5.12.2.tar.xz";
-      sha256 = "13ph0npgjc8mx1jn1pszj0hv3332lyamiq4wrpc7qgj6cx81qygz";
+      sha256 = "1hkdaxlr00s00ax0xm2zmfk9pwl4nrs1x2dna248s6dd06cjmapk";
-      name = "plasma-vault-5.12.1.tar.xz";
+      name = "plasma-vault-5.12.2.tar.xz";
     };
   };
   plasma-workspace = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/plasma-workspace-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/plasma-workspace-5.12.2.tar.xz";
-      sha256 = "1ijnafbsyrv9n0mldf77mipq03k29db2ad57iwvr310xpr0sckfq";
+      sha256 = "1v4xaviby76c833gx02s1bf0hk9smv4m2s8sp75yxirh2xv4azid";
-      name = "plasma-workspace-5.12.1.tar.xz";
+      name = "plasma-workspace-5.12.2.tar.xz";
     };
   };
   plasma-workspace-wallpapers = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/plasma-workspace-wallpapers-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/plasma-workspace-wallpapers-5.12.2.tar.xz";
-      sha256 = "0lsczs68w9ygzc9m7q2r6fziddzgraavyf2vf49d7543lym21k8n";
+      sha256 = "1x6qi0cpr461vc7gn4fzz9dh9wfwz6hcgb8dsz82wdxpwssck7i7";
-      name = "plasma-workspace-wallpapers-5.12.1.tar.xz";
+      name = "plasma-workspace-wallpapers-5.12.2.tar.xz";
     };
   };
   plymouth-kcm = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/plymouth-kcm-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/plymouth-kcm-5.12.2.tar.xz";
-      sha256 = "1wqqxxmcn49gryr7pyn5hq3jyl92r0m8dxns2wn2mgy2cz0xz5yk";
+      sha256 = "11kaprbcsd7j1kamsr9m9c27rj1ry8gxp1m6r1ibf9agimsmdfcb";
-      name = "plymouth-kcm-5.12.1.tar.xz";
+      name = "plymouth-kcm-5.12.2.tar.xz";
     };
   };
   polkit-kde-agent = {
-    version = "1-5.12.1";
+    version = "1-5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/polkit-kde-agent-1-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/polkit-kde-agent-1-5.12.2.tar.xz";
-      sha256 = "1hsy14xprgpfh0zgn1z9c8j8qs41wfizm38wr7nbnhk81k25kr96";
+      sha256 = "176wb8sh9r4f1ij604x52w4q5nbhmnqwxid3w107cqwpydnh0dm9";
-      name = "polkit-kde-agent-1-5.12.1.tar.xz";
+      name = "polkit-kde-agent-1-5.12.2.tar.xz";
     };
   };
   powerdevil = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/powerdevil-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/powerdevil-5.12.2.tar.xz";
-      sha256 = "09c8snaf236cbxp8ifv8zwy1zifld3gsszvvzyvwdhbpz3gr41hm";
+      sha256 = "0b9m3jm0ar84b2ln1ml5lk26nryrrlis7kj46whzqicwpdi7dpxw";
-      name = "powerdevil-5.12.1.tar.xz";
+      name = "powerdevil-5.12.2.tar.xz";
     };
   };
   sddm-kcm = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/sddm-kcm-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/sddm-kcm-5.12.2.tar.xz";
-      sha256 = "1ij90cjjnb8318v6s4m56xfhs6cvi9p09mwmgqsh5463ya74x7dy";
+      sha256 = "0nh8kviqn43zh6kdqzfcqksp48k1brd8bg4kni2cbmzif6md3ay3";
-      name = "sddm-kcm-5.12.1.tar.xz";
+      name = "sddm-kcm-5.12.2.tar.xz";
     };
   };
   systemsettings = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/systemsettings-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/systemsettings-5.12.2.tar.xz";
-      sha256 = "1nzscbs8v22wa8adlxcvhr2qhibpq3dm584774ma3rmzvagjl6hv";
+      sha256 = "06cfxydpcnzi5g6ipi7sgiswgrzhnksgyhsp56zgqdswbilanp4n";
-      name = "systemsettings-5.12.1.tar.xz";
+      name = "systemsettings-5.12.2.tar.xz";
     };
   };
   user-manager = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/user-manager-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/user-manager-5.12.2.tar.xz";
-      sha256 = "0db8lgh6sxfbc9v68yqq0g68rznkk8ml88h8zxrw5khicazg2n62";
+      sha256 = "047bssxfs8z1lhg25f263fq05w6m22mdk5i16ji5i11n26v8hdwa";
-      name = "user-manager-5.12.1.tar.xz";
+      name = "user-manager-5.12.2.tar.xz";
     };
   };
   xdg-desktop-portal-kde = {
-    version = "5.12.1";
+    version = "5.12.2";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.12.1/xdg-desktop-portal-kde-5.12.1.tar.xz";
+      url = "${mirror}/stable/plasma/5.12.2/xdg-desktop-portal-kde-5.12.2.tar.xz";
-      sha256 = "0xnryki83vmm1jmzkwfkxga0s1qfrl939rg6bb5h44j6665sv2bl";
+      sha256 = "1gr07p281icc2v7cv3n6rzi1c70ddkwiw12n9klk3sxprjxmc0pm";
-      name = "xdg-desktop-portal-kde-5.12.1.tar.xz";
+      name = "xdg-desktop-portal-kde-5.12.2.tar.xz";
     };
   };
 }

pkgs/development/compilers/z88dk/default.nix

@@ -0,0 +1,50 @@
+{ fetchFromGitHub, fetchpatch, stdenv, makeWrapper, unzip, libxml2, m4, uthash }:
+
+stdenv.mkDerivation rec {
+  name = "z88dk-${version}";
+  version = "20180217";
+  rev = "49a7c6032b2675af742f5b0b3aa5bd5260bdd814";
+  short_rev = "${builtins.substring 0 7 rev}";
+
+  src = fetchFromGitHub {
+    owner = "z88dk";
+    repo  = "z88dk";
+    inherit rev;
+    sha256 = "00vbklh6lkq1gyd08ig2vcg6c1mghvlwfx3vq3wldf34hcs3k4pp";
+  };
+
+  # https://github.com/z88dk/z88dk/pull/612
+  patches = [(fetchpatch {
+    url = "https://github.com/Mic92/z88dk/commit/5b4ca132fa1f31c9ac48cf2220358715739ca0b2.patch";
+    sha256 = "1p2l31j68p7jzykhkhd9iagn2lr08hdclk3cl9l32p1q6ghdipfv";
+  })];
+
+  postPatch = ''
+    # we dont rely on build.sh :
+    export PATH="$PWD/bin:$PATH" # needed to have zcc in testsuite
+    export ZCCCFG=$PWD/lib/config/
+  '';
+
+  makeFlags = [
+    "prefix=$(out)"
+    "git_rev=${short_rev}"
+    "version=${version}"
+    "git_count=0"
+  ];
+  nativeBuildInputs = [ makeWrapper unzip ];
+  buildInputs = [ libxml2 m4 uthash ];
+
+  preInstall = ''
+    mkdir -p $out/{bin,share}
+  '';
+
+  installTargets = "libs install";
+
+  meta = with stdenv.lib; {
+    homepage    = https://www.z88dk.org;
+    description = "z80 Development Kit";
+    license     = licenses.clArtistic;
+    maintainers = [ maintainers.genesis ];
+    platforms = [ "x86_64-linux" ];
+  };
+}

pkgs/development/interpreters/racket/default.nix

@@ -35,8 +35,13 @@ stdenv.mkDerivation rec {
   name = "racket-${version}";
   version = "6.12";
 
-  src = fetchurl {
+  src = (stdenv.lib.makeOverridable ({ name, sha256 }:
-    url = "https://mirror.racket-lang.org/installers/${version}/${name}-src.tgz";
+    fetchurl rec {
+      url = "https://mirror.racket-lang.org/installers/${version}/${name}-src.tgz";
+      inherit sha256;
+    }
+  )) {
+    inherit name;
     sha256 = "0cwcypzjfl9py1s695mhqkiapff7c1w29llsmdj7qgn58wl0apk5";
   };
 

pkgs/development/interpreters/racket/minimal.nix

@@ -0,0 +1,19 @@
+{ racket
+}:
+
+racket.overrideAttrs (oldAttrs: rec {
+  name = "racket-minimal-${oldAttrs.version}";
+  src = oldAttrs.src.override {
+    inherit name;
+    sha256 = "0c565jy2y3gjl5lncd5adjsrj8c24p4i062kphv26ni5q1nn5ip5";
+  };
+
+  meta = oldAttrs.meta // {
+    description = "Racket without bundled packages, such as Dr. Racket.";
+    longDescription = ''The essential package racket-libs is included,
+      as well as libraries that live in collections. In particular, raco
+      and the pkg library are still bundled.
+    '';
+    platforms = [ "x86_64-linux" "aarch64-linux" ];
+  };
+})

pkgs/development/libraries/nspr/default.nix

@@ -16,6 +16,9 @@ stdenv.mkDerivation {
 
   preConfigure = ''
     cd nspr
+  '' + stdenv.lib.optionalString stdenv.isDarwin ''
+    substituteInPlace configure --replace '@executable_path/' "$out/lib/"
+    substituteInPlace configure.in --replace '@executable_path/' "$out/lib/"
   '';
 
   configureFlags = [

pkgs/development/libraries/nss/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, nspr, perl, zlib, sqlite }:
+{ stdenv, fetchurl, nspr, perl, zlib, sqlite, fixDarwinDylibNames }:
 
 let
 
@@ -16,7 +16,8 @@ in stdenv.mkDerivation rec {
     sha256 = "186x33wsk4mzjz7dzbn8p0py9a0nzkgzpfkdv4rlyy5gghv5vhd3";
   };
 
-  buildInputs = [ perl zlib sqlite ];
+  buildInputs = [ perl zlib sqlite ]
+    ++ stdenv.lib.optional stdenv.isDarwin fixDarwinDylibNames;
 
   propagatedBuildInputs = [ nspr ];
 
@@ -33,6 +34,10 @@ in stdenv.mkDerivation rec {
 
   patchFlags = "-p0";
 
+  postPatch = stdenv.lib.optionalString stdenv.isDarwin ''
+    substituteInPlace nss/coreconf/Darwin.mk --replace '@executable_path/$(notdir $@)' "$out/lib/\$(notdir \$@)"
+  '';
+
   outputs = [ "out" "dev" "tools" ];
 
   preConfigure = "cd nss";

pkgs/development/libraries/ppl/default.nix

@@ -1,4 +1,4 @@
-{ fetchurl, stdenv, gmpxx, perl, gnum4 }:
+{ fetchurl, fetchpatch, stdenv, gmpxx, perl, gnum4 }:
 
 let version = "1.2"; in
 
@@ -10,6 +10,12 @@ stdenv.mkDerivation rec {
     sha256 = "1wgxcbgmijgk11df43aiqfzv31r3bkxmgb4yl68g21194q60nird";
   };
 
+  patches = [(fetchpatch {
+    name = "ppl.patch";
+    url = "http://www.cs.unipr.it/git/gitweb.cgi?p=ppl/ppl.git;a=patch;h=c39f6a07b51f89e365b05ba4147aa2aa448febd7";
+    sha256 = "1zj90hm25pkgvk4jlkfzh18ak9b98217gbidl3731fdccbw6hr87";
+  })];
+
   nativeBuildInputs = [ perl gnum4 ];
   propagatedBuildInputs = [ gmpxx ];
 

pkgs/development/mobile/webos/cmake-modules.nix

@@ -0,0 +1,32 @@
+{ stdenv, fetchFromGitHub, cmake }:
+
+stdenv.mkDerivation rec {
+  name = "cmake-modules-webos-${version}";
+  version = "19";
+
+  src = fetchFromGitHub {
+    owner = "openwebos";
+    repo = "cmake-modules-webos";
+    rev = "submissions/${version}";
+    sha256 = "1l4hpcmgc98kp9g1642sy111ki5qyk3q7j10xzkgmnvz8lqffnxp";
+  };
+
+  nativeBuildInputs = [ cmake ];
+
+  prePatch = ''
+    substituteInPlace CMakeLists.txt --replace "CMAKE_ROOT}/Modules" "CMAKE_INSTALL_PREFIX}/lib/cmake"
+    substituteInPlace webOS/webOS.cmake \
+      --replace ' ''${CMAKE_ROOT}/Modules' " $out/lib/cmake" \
+      --replace 'INSTALL_ROOT}/usr' 'INSTALL_ROOT}'
+
+    sed -i '/CMAKE_INSTALL_PREFIX/d' webOS/webOS.cmake
+  '';
+
+  setupHook = ./cmake-setup-hook.sh;
+
+  meta = with stdenv.lib; {
+    description = "CMake modules needed to build Open WebOS components";
+    license = licenses.asl20;
+    maintainers = with maintainers; [ dtzWill ];
+  };
+}

pkgs/development/mobile/webos/cmake-setup-hook.sh

@@ -0,0 +1,9 @@
+_addWebOSCMakeFlags() {
+  # Help find the webOS cmake module
+  cmakeFlagsArray+=(-DCMAKE_MODULE_PATH=@out@/lib/cmake)
+
+  # fix installation path (doesn't use CMAKE_INSTALL_PREFIX)
+  cmakeFlagsArray+=(-DWEBOS_INSTALL_ROOT=${!outputBin})
+}
+
+preConfigureHooks+=(_addWebOSCMakeFlags)

pkgs/development/mobile/webos/novacom.nix

@@ -0,0 +1,27 @@
+{ stdenv, fetchFromGitHub, webos, cmake, pkgconfig }:
+
+stdenv.mkDerivation rec {
+  name = "novacom-${version}";
+  version = "18";
+
+  src = fetchFromGitHub {
+    owner = "openwebos";
+    repo = "novacom";
+    rev = "submissions/${version}";
+    sha256 = "12s6g7l20kakyjlhqpli496miv2kfsdp17lcwhdrzdxvxl6hnf4n";
+  };
+
+  nativeBuildInputs = [ cmake pkgconfig webos.cmake-modules ];
+
+  postInstall = ''
+    install -Dm755 -t $out/bin ../scripts/novaterm
+    substituteInPlace $out/bin/novaterm --replace "exec novacom" "exec $out/bin/novacom"
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Utility for communicating with WebOS devices";
+    license = licenses.asl20;
+    maintainers = with maintainers; [ dtzWill ];
+    platforms = platforms.linux;
+  };
+}

pkgs/development/mobile/webos/novacomd.nix

@@ -0,0 +1,40 @@
+{ stdenv,
+fetchFromGitHub, fetchpatch,
+webos, cmake, pkgconfig,
+libusb }:
+
+stdenv.mkDerivation rec {
+  name = "novacomd-${version}";
+  version = "127";
+
+  src = fetchFromGitHub {
+    owner = "openwebos";
+    repo = "novacomd";
+    rev = "submissions/${version}";
+    sha256 = "1gahc8bvvvs4d6svrsw24iw5r0mhy4a2ars3j2gz6mp6sh42bznl";
+  };
+
+  patches = [
+    (fetchpatch {
+      url = "https://aur.archlinux.org/cgit/aur.git/plain/0001-Use-usb_bulk_-read-write-instead-of-homemade-handler.patch?h=palm-novacom-git";
+      sha256 = "116r6p4l767fqxfvq03sy6v7vxja8pkxlrc5hqby351a40b5dkiv";
+    })
+    (fetchpatch {
+      url = "https://raw.githubusercontent.com/feniksa/webos-overlay/40e2c113fc9426d50bdf37779da57ce4ff06ee6e/net-misc/novacomd/files/0011-Remove-verbose-output.patch";
+      sha256 = "09lmv06ziwkfg19b1h3jsmkm6g1f0nxxq1717dircjx8m45ypjq9";
+    })
+  ];
+
+  nativeBuildInputs = [ cmake pkgconfig webos.cmake-modules ];
+
+  buildInputs = [ libusb ];
+
+  cmakeFlags = [ "-DWEBOS_TARGET_MACHINE_IMPL=host" ];
+
+  meta = with stdenv.lib; {
+    description = "Daemon for communicating with WebOS devices";
+    license = licenses.asl20;
+    maintainers = with maintainers; [ dtzWill ];
+    platforms = platforms.linux;
+  };
+}

pkgs/development/python-modules/backports_csv/default.nix

@@ -11,7 +11,7 @@ buildPythonPackage rec {
     sha256 = "1imzbrradkfn8s2m1qcimyn74dn1mz2p3j381jljn166rf2i6hlc";
   };
 
-  propogatedBuildInputs = [ future ];
+  propagatedBuildInputs = [ future ];
 
   meta = with stdenv.lib; {
     description = "Backport of Python 3 csv module";

pkgs/development/python-modules/mysql-connector/default.nix

@@ -0,0 +1,30 @@
+{ lib, buildPythonPackage, fetchFromGitHub
+, protobuf
+}:
+
+buildPythonPackage rec {
+  pname = "mysql-connector";
+  version = "8.0.6";
+
+  src = fetchFromGitHub {
+    owner = "mysql";
+    repo = "mysql-connector-python";
+    rev = version;
+    sha256 = "1ygr7va56da12yp3gr7kzss9zgbs28q2lmdkw16rpxj108id4rkp";
+  };
+
+  propagatedBuildInputs = [ protobuf ];
+
+  doCheck = false;
+
+  meta = {
+    description = "A MySQL driver";
+    longDescription = ''
+      A MySQL driver that does not depend on MySQL C client libraries and
+      implements the DB API v2.0 specification.
+    '';
+    homepage = https://github.com/mysql/mysql-connector-python;
+    license = [ lib.licenses.gpl2 ];
+    maintainers = with lib.maintainers; [ primeos ];
+  };
+}

pkgs/development/python-modules/notify2/default.nix

@@ -0,0 +1,29 @@
+{ buildPythonPackage
+, lib
+, fetchPypi
+, pygobject3
+, dbus-python
+}:
+
+buildPythonPackage rec {
+  pname = "notify2";
+  version = "0.3.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0z8rrv9rsg1r2qgh2dxj3dfj5xnki98kgi3w839kqby4a26i1yik";
+  };
+
+
+  # Tests require Xorg and Dbus instance
+  doCheck = false;
+  propagatedBuildInputs = [ pygobject3
+                            dbus-python ]; 
+
+  meta = {
+    description = "Pure Python interface to DBus notifications";
+    homepage = https://bitbucket.org/takluyver/pynotify2;
+    license = lib.licenses.bsd2;
+    maintainers = with lib.maintainers; [ mog ];
+  };
+}

pkgs/development/python-modules/pyGithub/default.nix

@@ -1,24 +1,24 @@
 { stdenv, fetchFromGitHub
 , cacert
-, buildPythonPackage, python-jose }:
+, buildPythonPackage, python-jose, pyjwt }:
 
 buildPythonPackage rec {
   pname = "PyGithub";
-  version = "1.32";
+  version = "1.36";
   name = pname + "-" + version;
 
   src = fetchFromGitHub {
     owner = "PyGithub";
     repo = "PyGithub";
     rev = "v${version}";
-    sha256 = "15dr9ja63zdxax9lg6q2kcakqa82dpffyhgpjr13wq3sfkcy5pdw";
+    sha256 = "0yb74f9hg2vdsy766m850hfb1ss17lbgcdvvklm4qf72w12nxc5w";
   };
 
   postPatch = ''
     # requires network
     echo "" > github/tests/Issue142.py
   '';
-  propagatedBuildInputs = [ python-jose ];
+  propagatedBuildInputs = [ python-jose pyjwt ];
   meta = with stdenv.lib; {
     homepage = https://github.com/PyGithub/PyGithub;
     description = "A Python (2 and 3) library to access the GitHub API v3";

pkgs/development/python-modules/tensorflow-tensorboard/default.nix

@@ -1,22 +1,19 @@
-{ stdenv
+{ stdenv, lib, fetchPypi, buildPythonPackage, isPy3k
-, fetchPypi
-, buildPythonPackage
-, isPy3k
 , bleach_1_5_0
 , numpy
 , werkzeug
 , protobuf
 , markdown
+, futures
 }:
 
-# tensorflow is built from a downloaded wheel, because the upstream
+# tensorflow is built from a downloaded wheel, because
-# project's build system is an arcane beast based on
+# https://github.com/tensorflow/tensorboard/issues/719
-# bazel. Untangling it and building the wheel from source is an open
+# blocks buildBazelPackage.
-# problem.
 
 buildPythonPackage rec {
   pname = "tensorflow-tensorboard";
-  version = "0.1.5";
+  version = "1.5.1";
   name = "${pname}-${version}";
   format = "wheel";
 
@@ -26,16 +23,16 @@ buildPythonPackage rec {
     format = "wheel";
   } // (if isPy3k then {
     python = "py3";
-    sha256 = "0sfia05y1mzgy371faj96vgzhag1rgpa3gnbz9w1fay13jryw26x";
+    sha256 = "1cydgvrr0s05xqz1v9z2wdiv60gzbs8wv9wvbflw5700a2llb63l";
   } else {
     python = "py2";
-    sha256 = "0qx4f55zp54x079kxir4zz5b1ckiglsdcb9afz5wcdj6af4a6czg";
+    sha256 = "0dhljddlirq6nr84zg4yrk5k69gj3x2abb6wg3crgrparb6qbya7";
   }));
 
-  propagatedBuildInputs = [ bleach_1_5_0 numpy werkzeug protobuf markdown ];
+  propagatedBuildInputs = [ bleach_1_5_0 numpy werkzeug protobuf markdown ] ++ lib.optional (!isPy3k) futures;
 
   meta = with stdenv.lib; {
-    description = "TensorFlow helps the tensors flow";
+    description = "TensorFlow's Visualization Toolkit";
     homepage = http://tensorflow.org;
     license = licenses.asl20;
     maintainers = with maintainers; [ abbradar ];

pkgs/development/python-modules/tensorflow/default.nix

@@ -1,8 +1,8 @@
-{ stdenv, lib, fetchFromGitHub, fetchpatch, symlinkJoin, buildPythonPackage, isPy3k, pythonOlder
+{ stdenv, buildBazelPackage, lib, fetchFromGitHub, fetchpatch, symlinkJoin
-, bazel, which, swig, binutils, glibcLocales
+, buildPythonPackage, isPy3k, pythonOlder, pythonAtLeast
+, which, swig, binutils, glibcLocales
 , python, jemalloc, openmpi
-, numpy, six, protobuf, tensorflow-tensorboard, backports_weakref
+, numpy, six, protobuf, tensorflow-tensorboard, backports_weakref, mock, enum34, absl-py
-, wheel, mock, scipy
 , xlaSupport ? true
 , cudaSupport ? false, nvidia_x11 ? null, cudatoolkit ? null, cudnn ? null
 # Default from ./configure script
@@ -12,7 +12,8 @@
 , fmaSupport ? false
 }:
 
-assert cudaSupport -> cudatoolkit != null
+assert cudaSupport -> nvidia_x11 != null
+                   && cudatoolkit != null
                    && cudnn != null;
 
 # unsupported combination
@@ -27,40 +28,49 @@ let
     paths = [ cudatoolkit.out cudatoolkit.lib ];
   };
 
-  cudaLibPath = lib.makeLibraryPath [ cudatoolkit.out cudatoolkit.lib nvidia_x11 cudnn ];
-
   tfFeature = x: if x then "1" else "0";
 
-  common = rec {
+  version = "1.5.0";
-    version = "1.3.1";
+
+  pkg = buildBazelPackage rec {
+    name = "tensorflow-build-${version}";
 
     src = fetchFromGitHub {
       owner = "tensorflow";
       repo = "tensorflow";
       rev = "v${version}";
-      sha256 = "0gvi32dvv4ynr05p0gg5i0a6c55pig48k5qm7zslcqnp4sifwx0i";
+      sha256 = "1c4djsaip901nasm7a6dsimr02bsv70a7b1g0kysb4n39qpdh22q";
     };
 
-    nativeBuildInputs = [ swig which wheel scipy ];
+    patches = [
+      # Fix build with Bazel >= 0.10
+      (fetchpatch {
+        url = "https://github.com/tensorflow/tensorflow/commit/6fcfab770c2672e2250e0f5686b9545d99eb7b2b.patch";
+        sha256 = "0p61za1mx3a7gj1s5lsps16fcw18iwnvq2b46v1kyqfgq77a12vb";
+      })
+      (fetchpatch {
+        url = "https://github.com/tensorflow/tensorflow/commit/3f57956725b553d196974c9ad31badeb3eabf8bb.patch";
+        sha256 = "11dja5gqy0qw27sc9b6yw9r0lfk8dznb32vrqqfcnypk2qmv26va";
+      })
+    ];
 
-    buildInputs = [ python jemalloc openmpi glibcLocales ]
+    nativeBuildInputs = [ swig which ];
-      ++ lib.optionals cudaSupport [ cudatoolkit cudnn ];
 
-    propagatedBuildInputs = [ numpy six protobuf ]
+    buildInputs = [ python jemalloc openmpi glibcLocales numpy ]
-                            ++ lib.optional (!isPy3k) mock
+      ++ lib.optionals cudaSupport [ cudatoolkit cudnn nvidia_x11 ];
-                            ++ lib.optional (pythonOlder "3.4") backports_weakref
-                            ++ lib.optional withTensorboard tensorflow-tensorboard;
 
     preConfigure = ''
       patchShebangs configure
-      export HOME="$NIX_BUILD_TOP"
 
       export PYTHON_BIN_PATH="${python.interpreter}"
+      export PYTHON_LIB_PATH="$NIX_BUILD_TOP/site-packages"
       export TF_NEED_GCP=1
       export TF_NEED_HDFS=1
-      export TF_NEED_CUDA=${tfFeature cudaSupport}
-      export TF_NEED_MPI=1
       export TF_ENABLE_XLA=${tfFeature xlaSupport}
+      export CC_OPT_FLAGS=" "
+      # https://github.com/tensorflow/tensorflow/issues/14454
+      export TF_NEED_MPI=${tfFeature cudaSupport}
+      export TF_NEED_CUDA=${tfFeature cudaSupport}
       ${lib.optionalString cudaSupport ''
         export CUDA_TOOLKIT_PATH=${cudatoolkit_joined}
         export TF_CUDA_VERSION=${cudatoolkit.majorVersion}
@@ -70,13 +80,11 @@ let
         export TF_CUDA_COMPUTE_CAPABILITIES=${lib.concatStringsSep "," cudaCapabilities}
       ''}
 
-      # There is _no_ non-interactive mode of configure.
+      mkdir -p "$PYTHON_LIB_PATH"
-      sed -i \
-        -e 's,read -p,echo,g' \
-        -e 's,lib64,lib,g' \
-        configure
     '';
 
+    NIX_LDFLAGS = lib.optionals cudaSupport [ "-lcublas" "-lcudnn" "-lcuda" "-lcudart" ];
+
     hardeningDisable = [ "all" ];
 
     bazelFlags = [ "--config=opt" ]
@@ -87,101 +95,59 @@ let
 
     bazelTarget = "//tensorflow/tools/pip_package:build_pip_package";
 
-    meta = with stdenv.lib; {
+    fetchAttrs = {
-      description = "Computation using data flow graphs for scalable machine learning";
+      preInstall = ''
-      homepage = "http://tensorflow.org";
+        rm -rf $bazelOut/external/{bazel_tools,\@bazel_tools.marker,local_*,\@local_*}
-      license = licenses.asl20;
+      '';
-      maintainers = with maintainers; [ jyp abbradar ];
+
-      platforms = with platforms; if cudaSupport then linux else linux ++ darwin;
+      sha256 = "1nc98aqrp14q7llypcwaa0kdn9xi7r0p1mnd3vmmn1m299py33ca";
     };
-  };
 
-in buildPythonPackage (common // {
+    buildAttrs = {
-  pname = "tensorflow";
+      preBuild = ''
-  version = common.version;
+        patchShebangs .
-  name = "tensorflow-${common.version}";
+        find -type f -name CROSSTOOL\* -exec sed -i \
+          -e 's,/usr/bin/ar,${binutils.bintools}/bin/ar,g' \
+          {} \;
+      '';
 
-  deps = stdenv.mkDerivation (common // {
+      installPhase = ''
-    name = "tensorflow-external-${common.version}";
+        sed -i 's,.*bdist_wheel.*,cp -rL . "$out"; exit 0,' bazel-bin/tensorflow/tools/pip_package/build_pip_package 
-
+        bazel-bin/tensorflow/tools/pip_package/build_pip_package $PWD/dist
-    nativeBuildInputs = common.nativeBuildInputs ++ [ bazel ];
+      '';
-
+    };
-    preConfigure = common.preConfigure + ''
-      export PYTHON_LIB_PATH="$(pwd)/site-packages"
-    '';
-
-    buildPhase = ''
-      mkdir site-packages
-      bazel --output_base="$(pwd)/output" fetch $bazelFlags $bazelTarget
-    '';
-
-    installPhase = ''
-      rm -rf output/external/{bazel_tools,\@bazel_tools.marker,local_*,\@local_*}
-      # Patching markers to make them deterministic
-      for i in output/external/\@*.marker; do
-        sed -i 's, -\?[0-9][0-9]*$, 1,' "$i"
-      done
-      # Patching symlinks to remove build directory reference
-      find output/external -type l | while read symlink; do
-        ln -sf $(readlink "$symlink" | sed "s,$NIX_BUILD_TOP,NIX_BUILD_TOP,") "$symlink"
-      done
-
-      cp -r output/external $out
-    '';
 
     dontFixup = true;
+  };
 
-    outputHashMode = "recursive";
+in buildPythonPackage rec {
-    outputHashAlgo = "sha256";
+  pname = "tensorflow";
-    outputHash = "0xs2n061gnpizfcnhs5jjpfk2av634j1l2l17zhy10bbmrwn3vrp";
+  inherit version;
-  });
+  name = "${pname}-${version}";
 
-  nativeBuildInputs = common.nativeBuildInputs ++ [ (bazel.override { enableNixHacks = true; }) ];
+  src = pkg;
 
-  configurePhase = ''
-    runHook preConfigure
-    export PYTHON_LIB_PATH="$out/${python.sitePackages}"
-    ./configure
-    runHook postConfigure
-  '';
-
-  buildPhase = ''
-    mkdir -p output/external
-    cp -r $deps/* output/external
-    chmod -R +w output
-    find output -type l | while read symlink; do
-      ln -sf $(readlink "$symlink" | sed "s,NIX_BUILD_TOP,$NIX_BUILD_TOP,") "$symlink"
-    done
-
-    patchShebangs .
-    find -type f -name CROSSTOOL\* -exec sed -i \
-      -e 's,/usr/bin/ar,${binutils}/bin/ar,g' \
-      {} \;
-
-    mkdir -p $out/${python.sitePackages}
-    bazel --output_base="$(pwd)/output" build $bazelFlags $bazelTarget
-
-    bazel-bin/tensorflow/tools/pip_package/build_pip_package $PWD/dist
-  '';
-
-  # tensorflow depends on tensorflow_tensorboard, which cannot be
-  # built at the moment (some of its dependencies do not build
-  # [htlm5lib9999999 (seven nines) -> tensorboard], and it depends on an old version of
-  # bleach) Hence we disable dependency checking for now.
   installFlags = lib.optional (!withTensorboard) "--no-dependencies";
 
-  # Tests are slow and impure.
+  postPatch = lib.optionalString (pythonAtLeast "3.4") ''
-  doCheck = false;
+    sed -i '/enum34/d' setup.py
-
-  # For some reason, CUDA is not retained in RPATH.
-  postFixup = lib.optionalString cudaSupport ''
-    libPath="$out/${python.sitePackages}/tensorflow/python/_pywrap_tensorflow_internal.so"
-    patchelf --set-rpath "$(patchelf --print-rpath "$libPath"):${cudaLibPath}" "$libPath"
   '';
 
-  doInstallCheck = true;
+  propagatedBuildInputs = [ numpy six protobuf absl-py ]
-  installCheckPhase = ''
+                 ++ lib.optional (!isPy3k) mock
-    cd $NIX_BUILD_TOP
+                 ++ lib.optionals (pythonOlder "3.4") [ backports_weakref enum34 ]
+                 ++ lib.optional withTensorboard tensorflow-tensorboard;
+
+  # Actual tests are slow and impure.
+  checkPhase = ''
     ${python.interpreter} -c "import tensorflow"
   '';
-})
+
+  meta = with stdenv.lib; {
+    description = "Computation using data flow graphs for scalable machine learning";
+    homepage = "http://tensorflow.org";
+    license = licenses.asl20;
+    maintainers = with maintainers; [ jyp abbradar ];
+    platforms = with platforms; if cudaSupport then linux else linux ++ darwin;
+  };
+}

pkgs/development/r-modules/bioc-annotation-packages.nix

@@ -4,8 +4,10 @@
 # Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix
 
 { self, derive }:
-let derive2 = derive { rVersion = "3.4"; };
+let derive2 = derive { biocVersion = "3.6"; };
 in with self; {
+  AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.0"; sha256="0g92nz33rx14zl5can7s701bipdgz7rxqygvvc22c4a0qj52ijnq"; depends=[]; };
+  AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.0.4"; sha256="0wchfmz3fl0vx7mmddh9s6sy04xvjh6nkw61yx1ddcdhzrwa45i7"; depends=[AnnotationHubData ensembldb]; };
   BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.0"; sha256="06549kkzy36n378zb61lrf9zardncp7i20r73rmmiq1pnfjp3gww"; depends=[BSgenome]; };
   BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; };
   BSgenome_Amellifera_UCSC_apiMel2 = derive2 { name="BSgenome.Amellifera.UCSC.apiMel2"; version="1.4.0"; sha256="1967w7aly7qydykk7rar712kvgsav3zjr4kirybkj17nwiynd74g"; depends=[BSgenome]; };
@@ -95,13 +97,13 @@ in with self; {
   BSgenome_Vvinifera_URGI_IGGP8X = derive2 { name="BSgenome.Vvinifera.URGI.IGGP8X"; version="0.1"; sha256="0v0hi2pbbi5ynd92bvbv4bzr7bgv48kvyz62hdv7k9gh7s5pg0id"; depends=[BSgenome]; };
   ChemmineDrugs = derive2 { name="ChemmineDrugs"; version="1.0.0"; sha256="0h4jxcb6vkf9ijljas7yvcx6vmrd5rpjgj202cf2jb9hx8h9497i"; depends=[BiocGenerics ChemmineR RSQLite]; };
   DO_db = derive2 { name="DO.db"; version="2.9"; sha256="10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"; depends=[AnnotationDbi]; };
-  EnsDb_Hsapiens_v75 = derive2 { name="EnsDb.Hsapiens.v75"; version="2.1.0"; sha256="020vrkfjs7bwnz897l3x4fmc1bnzn3n1zpmv5mmnn8fm35qcrai8"; depends=[ensembldb]; };
+  EnsDb_Hsapiens_v75 = derive2 { name="EnsDb.Hsapiens.v75"; version="2.99.0"; sha256="0jx6rf6v0j8yr07q3c1h7s121901dc400nm6xaiv4i7kb5czjn9c"; depends=[ensembldb]; };
-  EnsDb_Hsapiens_v79 = derive2 { name="EnsDb.Hsapiens.v79"; version="2.1.0"; sha256="1684sl2smmp2bdkfzv9v5f04100p4hqkfhn1m73pyppygkpak2hp"; depends=[ensembldb]; };
+  EnsDb_Hsapiens_v79 = derive2 { name="EnsDb.Hsapiens.v79"; version="2.99.0"; sha256="0k94iml0417m3k086d0bzd83fndyb2kn7pimsfzcdmafgy6sxwgg"; depends=[ensembldb]; };
-  EnsDb_Hsapiens_v86 = derive2 { name="EnsDb.Hsapiens.v86"; version="2.1.0"; sha256="1xbvzl8abgcafzd3f8kaypq5b6lpa8j92m2skgsagn0mfpqwqk4s"; depends=[ensembldb]; };
+  EnsDb_Hsapiens_v86 = derive2 { name="EnsDb.Hsapiens.v86"; version="2.99.0"; sha256="1gp7xrzddpvmh2vrcp571wyy00skxgxfl39ksj4h0hm1qay0fb2m"; depends=[ensembldb]; };
-  EnsDb_Mmusculus_v75 = derive2 { name="EnsDb.Mmusculus.v75"; version="2.1.0"; sha256="0r6j0andx2mbrjk7wfhr4k8cwpll63i08m0073fik0cy08hy0f6l"; depends=[ensembldb]; };
+  EnsDb_Mmusculus_v75 = derive2 { name="EnsDb.Mmusculus.v75"; version="2.99.0"; sha256="00c92l6ii2p3hila8xpblmidx8pmy11x1xh4gnwsq3f3rn1q200g"; depends=[ensembldb]; };
-  EnsDb_Mmusculus_v79 = derive2 { name="EnsDb.Mmusculus.v79"; version="2.1.0"; sha256="12shvxcj8jjzn5mil6vfil4a9jnrfs41jlll4wypgs4iyb0m8f7g"; depends=[ensembldb]; };
+  EnsDb_Mmusculus_v79 = derive2 { name="EnsDb.Mmusculus.v79"; version="2.99.0"; sha256="1zpmq7v55if6q9r0h883q9k8l70ym20b01m9hxf121wb256rl9f7"; depends=[ensembldb]; };
-  EnsDb_Rnorvegicus_v75 = derive2 { name="EnsDb.Rnorvegicus.v75"; version="2.1.0"; sha256="1bdr417m0dk2qdkz4ydfzhl3q728c9vl8k5w84x4g8cqv0bv58lv"; depends=[ensembldb]; };
+  EnsDb_Rnorvegicus_v75 = derive2 { name="EnsDb.Rnorvegicus.v75"; version="2.99.0"; sha256="02sx9l1p67ihkn0dfzbi08cpp8x4k2mjdqn7hvzfiaibsbqp70bb"; depends=[ensembldb]; };
-  EnsDb_Rnorvegicus_v79 = derive2 { name="EnsDb.Rnorvegicus.v79"; version="2.1.0"; sha256="1nri32xkz764nnpxfh8hbp6c8f8xd565jl5hwhvn6ml2awjqxd83"; depends=[ensembldb]; };
+  EnsDb_Rnorvegicus_v79 = derive2 { name="EnsDb.Rnorvegicus.v79"; version="2.99.0"; sha256="1ki2hrn0a55f3ipxny0hpgl5ld9pjkhcwmvvqwwd99f3sqbxf3br"; depends=[ensembldb]; };
   FDb_FANTOM4_promoters_hg19 = derive2 { name="FDb.FANTOM4.promoters.hg19"; version="1.0.0"; sha256="04sn5x1r5fcbghzw6n1bvy0z8zyhrbk86wsqz1p5gk665vicz8rw"; depends=[AnnotationDbi Biostrings GenomicFeatures]; };
   FDb_InfiniumMethylation_hg18 = derive2 { name="FDb.InfiniumMethylation.hg18"; version="2.2.0"; sha256="0vwzqzj49imjdsn8ssiwqi7qic7rqw5pbsiinyxgy7y10fn2i42a"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg18_knownGene]; };
   FDb_InfiniumMethylation_hg19 = derive2 { name="FDb.InfiniumMethylation.hg19"; version="2.2.0"; sha256="0gq90fvph6kgrpjb89nvzq6hl1k24swn19rgjh5g98l86mja6nk0"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg19_knownGene]; };
@@ -109,7 +111,8 @@ in with self; {
   FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; };
   FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; };
   GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; };
-  GO_db = derive2 { name="GO.db"; version="3.4.0"; sha256="02cj8kqi5w39jwcs8gp1dgj08sah262ppxnkz4h3qd0w191y8yyl"; depends=[AnnotationDbi]; };
+  GO_db = derive2 { name="GO.db"; version="3.5.0"; sha256="02d1mn1al3q7qvhx1ylrr3ar4w4iw0qyi5d89v2336rzwk9maq35"; depends=[AnnotationDbi]; };
+  GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.0.0"; sha256="0xp8hyc4r3lz76i0x8r9lp74h2j8p7fcrn7nqmjhx5kn9bdp7fyp"; depends=[]; };
   Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; };
   Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.3"; sha256="034aady3hy8j9bm7pbl8l8h0gcfnzmpyxg9l9s1ky0pj7ryzr93a"; depends=[AnnotationDbi org_Hs_eg_db]; };
   HsAgilentDesign026652_db = derive2 { name="HsAgilentDesign026652.db"; version="3.2.3"; sha256="0x6nxvzmc8k4qp382ca32y58awkxpg0b3kc7m1mz9iag6sq7c5vx"; depends=[AnnotationDbi org_Hs_eg_db]; };
@@ -121,111 +124,105 @@ in with self; {
   IlluminaHumanMethylation27k_db = derive2 { name="IlluminaHumanMethylation27k.db"; version="1.4.8"; sha256="0zw0n4a9v42ifmvw2hfzzvl8jz1d7f00ia59ljhcvvw9aj12q4zs"; depends=[AnnotationDbi org_Hs_eg_db]; };
   IlluminaHumanMethylation27kanno_ilmn12_hg19 = derive2 { name="IlluminaHumanMethylation27kanno.ilmn12.hg19"; version="0.6.0"; sha256="0idy6xn3x5c640d47q52na03s29pj4l38dpxy8q9mh6hy8g29vp3"; depends=[minfi]; };
   IlluminaHumanMethylation27kmanifest = derive2 { name="IlluminaHumanMethylation27kmanifest"; version="0.4.0"; sha256="1kvz6z7g61zdrc1i93wsk1zv5mwcswfkxkl114644q09djwbz1fx"; depends=[minfi]; };
-  IlluminaHumanMethylation450k_db = derive2 { name="IlluminaHumanMethylation450k.db"; version="2.0.9"; sha256="1zmm65qnm95w9c8z30c9vncca451npbhhnlkpkpp894svsakxziz"; depends=[AnnotationDbi org_Hs_eg_db]; };
   IlluminaHumanMethylation450kanno_ilmn12_hg19 = derive2 { name="IlluminaHumanMethylation450kanno.ilmn12.hg19"; version="0.6.0"; sha256="059vlxsx3p3fcnywwirahsc6mlk813zpqnbv0jsrag6x5bb8z6r4"; depends=[minfi]; };
   IlluminaHumanMethylation450kmanifest = derive2 { name="IlluminaHumanMethylation450kmanifest"; version="0.4.0"; sha256="0qx75xwifrbkqmbkd8dhf44c34ibmbivqh7y8rvgrsizmi5ybcj1"; depends=[minfi]; };
   IlluminaHumanMethylation450kprobe = derive2 { name="IlluminaHumanMethylation450kprobe"; version="2.0.6"; sha256="1iah0rw7d8qvgwvn6n2l4cln39ky010gqpd9shml45m48m6whiia"; depends=[AnnotationDbi]; };
   IlluminaHumanMethylationEPICanno_ilm10b2_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b2.hg19"; version="0.6.0"; sha256="0sfdx0lpiw3l4passx93pjfswd0iv3hxdc7ciazh53baib3xpv2d"; depends=[minfi]; };
+  IlluminaHumanMethylationEPICanno_ilm10b3_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b3.hg19"; version="0.6.0"; sha256="1rdkvbpbz8a8bd9ipycfmgn8a3x519abhwywka21ii9ziv3s6ah6"; depends=[minfi]; };
+  IlluminaHumanMethylationEPICanno_ilm10b4_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b4.hg19"; version="0.6.0"; sha256="0687b4k8hwfc18qgdd9ypv1skp37jd204fszba0gmrv3dc92i09c"; depends=[minfi]; };
   IlluminaHumanMethylationEPICmanifest = derive2 { name="IlluminaHumanMethylationEPICmanifest"; version="0.3.0"; sha256="0alhjda5g186z8b1nsmnpfswrlj7prdz8mkwx60wkkl6hkcnk6p3"; depends=[minfi]; };
   JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.3"; sha256="04lvcmm4ybxkfwgbiwcnpyj6kpbd0gd7jz6ijlbbvv6zdgdmvykb"; depends=[AnnotationDbi org_Hs_eg_db]; };
   KEGG_db = derive2 { name="KEGG.db"; version="3.2.3"; sha256="0qv9in1nmnqcbjxh0y45x33xyw9zdp4jf5hmlvcsh1pclcq4dsh2"; depends=[AnnotationDbi]; };
   LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.3"; sha256="0960gy5p4ybs5zs6251cgc3nk5a9gsh1nh23gkbkr3gc8jddinfm"; depends=[AnnotationDbi org_Hs_eg_db]; };
   LowMACAAnnotation = derive2 { name="LowMACAAnnotation"; version="0.99.3"; sha256="0ri301ci54s8wwkah1jccy5h44xg8yjk08j5b15qmdsm25hli4wm"; depends=[]; };
   LymphoSeqDB = derive2 { name="LymphoSeqDB"; version="0.99.2"; sha256="1cdyn2imjh4zr23szndc4vwyiacxs1jsp14gil2dyq9aifa25qr7"; depends=[]; };
-  MafDb_1Kgenomes_phase1_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase1.hs37d5"; version="3.4.0"; sha256="180z52y03gdkf36ycr76vcs1mz9qdbwywzxrbcj6yb5vcj8i5hdx"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
+  MafDb_1Kgenomes_phase1_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase1.hs37d5"; version="3.6.0"; sha256="19y1w2nk3xj4xkg46vhmfk045j8cg81x9a27irmgl2ym3pmcpn92"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
-  MafDb_1Kgenomes_phase3_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase3.hs37d5"; version="3.4.0"; sha256="10968v506gmhzrnjz92z2p4484dbhgs6a20lkhs6f79bl66ckdbj"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
+  MafDb_1Kgenomes_phase3_hs37d5 = derive2 { name="MafDb.1Kgenomes.phase3.hs37d5"; version="3.6.0"; sha256="02bwgqh4mx9yfsyr6cxglncdybkxq9rc0gir3919sjs2my3pa0yq"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
-  MafDb_ESP6500SI_V2_SSA137 = derive2 { name="MafDb.ESP6500SI.V2.SSA137"; version="3.4.0"; sha256="1s5vqp3fnkswiv2slsh0wkd286psdhqcwvchcjq3gm4hq86h4pwh"; depends=[AnnotationDbi Biobase Biostrings GenomicRanges IRanges Rsamtools RSQLite VariantAnnotation VariantFiltering]; };
+  MafDb_ESP6500SI_V2_SSA137_GRCh38 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.GRCh38"; version="3.6.0"; sha256="07spwx7akc7i82s8il6mjkmyll07v2slkv6h6fy1rrsa0hrdrw8w"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
-  MafDb_ESP6500SI_V2_SSA137_GRCh38 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.GRCh38"; version="3.4.0"; sha256="1qaqqkshvrf7y6lwnnh8n47zvb35vn23l8vmvm29przz8y2xz22v"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
+  MafDb_ESP6500SI_V2_SSA137_hs37d5 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.hs37d5"; version="3.6.0"; sha256="1gr9gh355h1n426rwsr44wk4fgy0bvjfyaai2jj0qnp9zb94kr42"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
-  MafDb_ESP6500SI_V2_SSA137_hs37d5 = derive2 { name="MafDb.ESP6500SI.V2.SSA137.hs37d5"; version="3.4.0"; sha256="0gxj4nghd99r6ivgzvs86gl8j1frr8laira4gld0vmfp0a4iv5fy"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
+  MafDb_ExAC_r1_0_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.hs37d5"; version="3.6.0"; sha256="1a2x86cdl6q3s9phb6dzblld4y43r10gh7323c5jnwiyirhs4hlc"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
-  MafDb_ExAC_r0_3_1_nonTCGA_snvs_hs37d5 = derive2 { name="MafDb.ExAC.r0.3.1.nonTCGA.snvs.hs37d5"; version="3.4.0"; sha256="060750f8zz3gasgnq6smzq7f68nd9jh12wb8gpivc3xklx7gcrk9"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
+  MafDb_ExAC_r1_0_nonTCGA_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.nonTCGA.hs37d5"; version="3.6.0"; sha256="1zyp1hsqdcspnvlnqm3wp9xly8r6kjbglbdqsc8fxllivdzxs15f"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
-  MafDb_ExAC_r0_3_1_snvs_hs37d5 = derive2 { name="MafDb.ExAC.r0.3.1.snvs.hs37d5"; version="3.4.0"; sha256="0kq7c2zqzm0g4mbdzqgxq5bklsr2n0cm8x97gn3cfbf61y96ngqw"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
+  MafDb_TOPMed_freeze5_hg38 = derive2 { name="MafDb.TOPMed.freeze5.hg38"; version="3.6.0"; sha256="02hq5agpbqcc5cva6xa37kniwi0fi7h5d4cbpmlwfc502n0ahlx0"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
-  MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.7.0"; sha256="16h0yvjmrp8x5a0gqzpd9zc2f7q89pr1jsqqwxa44i8hqrgan0zp"; depends=[MeSHDbi]; };
+  MafDb_gnomAD_r2_0_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.0.1.hs37d5"; version="3.6.0"; sha256="0fjpm1lf8qz5vfd4k2sd50a0nkxx8jlf31c1xp87a2d5v7gyx9d4"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
-  MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.7.0"; sha256="04wqdv5z7r2lv49711k0z6vs408yyp96vnsmvyjh15m2bx3bbp3s"; depends=[MeSHDbi]; };
+  MafDb_gnomADex_r2_0_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.0.1.hs37d5"; version="3.6.0"; sha256="1jrzj9mw8xqxmw4qq9djs1f5slvd5l7151pcg9bqzj0162zcz8jb"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
-  MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.7.0"; sha256="1k7kx59k9q6hd2svxi233bgq06h3wd6ahcm5lyy2i0br5crysbir"; depends=[MeSHDbi]; };
+  MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.9.0"; sha256="0vlvfwr9bi229xwdjymclj0z2spxx8q96hpkgvqyndfpqchapl5q"; depends=[MeSHDbi]; };
-  MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.7.0"; sha256="08wi41vxxb5ssbgz019dq5n4li0vfnv737iaavmy07hymh6js9v8"; depends=[MeSHDbi]; };
+  MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.9.0"; sha256="1cx2yzx67fgqi0kmf1mk3ykvmqmprilxrjg6l51srjhi40p9q1wg"; depends=[MeSHDbi]; };
-  MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.7.0"; sha256="0l0a60mv7s08aflgra3ynkpr455953fr6lxv67xwkjag8k14gsi1"; depends=[MeSHDbi]; };
+  MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.9.0"; sha256="1gy4l1p0980blf91f57sxnn38gfyq99lmy3sfc141nm435abdh2l"; depends=[MeSHDbi]; };
-  MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.7.0"; sha256="0ix24hj6g3n44g5g4f22dv84q3w6k588san83048x7w946774jf5"; depends=[MeSHDbi]; };
+  MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.9.0"; sha256="1z2y8mdjyjclf0lqlhi9dq9gq8cqrm8m2m0rnyqgbadsxviwg447"; depends=[MeSHDbi]; };
-  MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.7.0"; sha256="1dagpmrwmsgb8hylc69wic3qfl0cfs0qp9ib32w6qv9y71zg4i1c"; depends=[MeSHDbi]; };
+  MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.9.0"; sha256="15393b8pyh8xclbi43q3iv6lvza7az7zyc2zcmj2wnqx8x9nn50p"; depends=[MeSHDbi]; };
-  MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.7.0"; sha256="02dhvpzacq6v785q4r5r5d6sm0wzqrgm1k7ajn7h3y8v3gjyymap"; depends=[MeSHDbi]; };
+  MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.9.0"; sha256="0r1q383f5p92f238m7w0gxalfr8w638ij4dj8zm1b20qakwb8bk6"; depends=[MeSHDbi]; };
-  MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.7.0"; sha256="1sv8g45lay1fijlnryza8nz3hf1r2lvcclf3kd1x6iw6fi0yn4q2"; depends=[MeSHDbi]; };
+  MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.9.0"; sha256="1fv6hfqx562qiy87h7bjym72ffygfgdfx0miwbnwd1wblbrs4m23"; depends=[MeSHDbi]; };
-  MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.7.0"; sha256="16xkz7cbg64rcgv82baxvxnyy5gg16l9cl97xdlk4wvzkyp944hy"; depends=[MeSHDbi]; };
+  MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.9.0"; sha256="0m78hqfcpnfbq7dm28l24ckhz91sbq3mgi0qdkn6l69rg19l5xwr"; depends=[MeSHDbi]; };
-  MeSH_Bsu_TUB10_eg_db = derive2 { name="MeSH.Bsu.TUB10.eg.db"; version="1.7.0"; sha256="1d7i7q78fdnr73a0qdpcwb28jk5gj77af4vyz708gw1803l35gb1"; depends=[MeSHDbi]; };
+  MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.9.0"; sha256="1s180b36nz4g7w2c49c4dddz4362ps45fjbs8q07s8d5r826wil0"; depends=[MeSHDbi]; };
-  MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.7.0"; sha256="0lbq02vslnv1gj01ill14hf15mncqbwx7p872c8whvdkziwrvki8"; depends=[MeSHDbi]; };
+  MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.9.0"; sha256="0s0bskw9y5gbf80xf7sh43csa8mwi0h4ka2dai6jm763jdal645s"; depends=[MeSHDbi]; };
-  MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.7.0"; sha256="12nfjk5qndfrg4p11nfy392nzsrgd196qrxiqx36vffbindpmykd"; depends=[MeSHDbi]; };
+  MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.9.0"; sha256="1nfy0fa7jnlsq823jq1im6zimnanqx6hc4z9sa2mhpn8yw3hrzcy"; depends=[MeSHDbi]; };
-  MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.7.0"; sha256="128hslq3vs4psp64vi6vj84za2kbh0jwlc20j2ivnjkrr30fsb2h"; depends=[MeSHDbi]; };
+  MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.9.0"; sha256="111q80xyfnz9p8230wnm0xkam2p25drbcb2nyr68lpz3l02m9c72"; depends=[MeSHDbi]; };
-  MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.7.0"; sha256="1x5l0p0iiwqg7ci7nirwcsarg33b43clrbvr2cf20rxhc1valmpz"; depends=[MeSHDbi]; };
+  MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.9.0"; sha256="0xpm52xshhjw0lazfz9zhk3wiqas88aabin58iqykbyivnaxgiw8"; depends=[MeSHDbi]; };
-  MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.7.0"; sha256="1y87i8x6ismji8y6i6yibz5zacf4486dkzmmxggy6ly80lisklb2"; depends=[MeSHDbi]; };
+  MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.9.0"; sha256="1ni1w608mr28fapxhxj5icf1yjq6wrnqfhxc8bf5q5qqpnb34k16"; depends=[MeSHDbi]; };
-  MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.7.0"; sha256="05mn2a7fb3zcfzqwl60zp946xyp0kdr5ld7nxh79yxwglhb2r6v0"; depends=[MeSHDbi]; };
+  MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.9.0"; sha256="0c1rxpsavj4j9sndr2bigyxsdg7hm3ckbk2rai2gz125vwlfy9ll"; depends=[MeSHDbi]; };
-  MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.7.0"; sha256="0hii578hva5aa388zkiarm07w437ccci3qpskd8nl0qyj1xmpb72"; depends=[MeSHDbi]; };
+  MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.9.0"; sha256="10zxx8hpd72dad1ais9qr1ahkrqygmrzj2zph8n7zwvcys3mqqqg"; depends=[MeSHDbi]; };
-  MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.7.0"; sha256="1nm83ydgfzb43agra99sp10a513fn69yzxg430f0qdwaw564c85y"; depends=[MeSHDbi]; };
+  MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.9.0"; sha256="0g8dafmjls4lafbg3a484iym0df173szvnzfqz272sh32a69ikgb"; depends=[MeSHDbi]; };
-  MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.7.0"; sha256="1gnvf3qm17xa1q0szb4gqnslws6g026x79hmjg7fnkcyn6faxgy9"; depends=[MeSHDbi]; };
+  MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.9.0"; sha256="0r4yrxflppzf21zfiyq1hxsjjgm7a3akj18qly8576nl94py0h16"; depends=[MeSHDbi]; };
-  MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.7.0"; sha256="0qnj09hpnmpxwj448wl4vdpzzmdm1w9m4gq3r2pak30fp5l2mv9i"; depends=[MeSHDbi]; };
+  MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.9.0"; sha256="1aicx7f7mpawq9mbrdkpach2n8yz2isqfqxcqx355js8csdnai6y"; depends=[MeSHDbi]; };
-  MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.7.0"; sha256="14z8gbnj6jjh2v76qqpikylaz781gfag6r199hkq20pfph10hld7"; depends=[MeSHDbi]; };
+  MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.9.0"; sha256="1d829frcmx9h0yn4dk2ddhqjjf4kz6n0c8nag31n5viaj0jrxhz9"; depends=[MeSHDbi]; };
-  MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.7.0"; sha256="0114vi0k57nv6pxq74c4h38b4yavs74vzidm8gg0pws2pxk8grah"; depends=[MeSHDbi]; };
+  MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.9.0"; sha256="0zx7s0xbqxl2xs1xhv5q3ppr33zfyjs4c5cmfp904k21fp1gyxk0"; depends=[MeSHDbi]; };
-  MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.7.0"; sha256="0ia2xp2bl6bb497gscqbxyd9kd33bynhyg5avvyfddkhpnljv5dx"; depends=[MeSHDbi]; };
+  MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.9.0"; sha256="1sahvwvh29m2icqi3l4ain817cmlajklmc6w32ay5ydbxdl2k2aq"; depends=[MeSHDbi]; };
-  MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.7.0"; sha256="0rgjng9g69kwhh01kww5mahwbikiyc8qgzh363j2m7piqmsc5siy"; depends=[MeSHDbi]; };
+  MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.9.0"; sha256="0g8z6cdz5wad9fhzd0f7p7961kjv1icfwxfskgimrb0dqn0vwngz"; depends=[MeSHDbi]; };
-  MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.7.0"; sha256="0m4n7wfxxgw5i9zpcss25x1n47bpshvca03cigfmxaqvh3lagf2n"; depends=[MeSHDbi]; };
+  MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.9.0"; sha256="1g68dv597h62kidkaxmyj67jpz49aklr77hf0zy0n556whb0gjw0"; depends=[MeSHDbi]; };
-  MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.7.0"; sha256="1hchnrhgvk18cs8hzg7dvf2fqrpk7fqgarkp23h325clrrh243l0"; depends=[MeSHDbi]; };
+  MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.9.0"; sha256="18r1mfmszsypp6iwdfcdlxzbz2ym53q160y5740d20nf18jwdkyl"; depends=[MeSHDbi]; };
-  MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.7.0"; sha256="19bpjyxja7clnyvhcwfv939z1xplxj5naz4vpchs555arzx0c2m4"; depends=[MeSHDbi]; };
+  MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.9.0"; sha256="09r83x7c3ascv5k10izbsybbchng578f88cqcc34a71h01ccvbgl"; depends=[MeSHDbi]; };
-  MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.7.0"; sha256="1njf3r6dfcvs2734mdsb3zlpkqgip9nnmmaxfz7wy3fqhn2ddyqa"; depends=[MeSHDbi]; };
+  MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.9.0"; sha256="0c6yi84drl1kp270ifhkha6s5555pmx122r3zsh5lqip4pf36ik0"; depends=[MeSHDbi]; };
-  MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.7.0"; sha256="0i66f7g4zfz44gnrqgl7mw0k7kadj6pmsqkk62ik2af783y9cv0r"; depends=[MeSHDbi]; };
+  MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.9.0"; sha256="0za05dgsy67sl1rg827mn4iir2fcwqgnmmifppdkmg5bcqvh3sli"; depends=[MeSHDbi]; };
-  MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.7.0"; sha256="10ndr1g76d955gii8m91l5nfvxxim3k7b5fk9r7d8fnzwagjnpij"; depends=[MeSHDbi]; };
+  MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.9.0"; sha256="1m8vszsdql5vnbavrdazrf0d88nq8c08bz9fggr1799fmh9ivppi"; depends=[MeSHDbi]; };
-  MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.7.0"; sha256="1nwig8czz65cfrq1mw62h85wh9wch69b5i12iry85x1567q7sfbv"; depends=[MeSHDbi]; };
+  MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.9.0"; sha256="1sjm22yl4a9lwv6j5hhs16zs39fv9xvaga2bgb55rv6i1zbw514v"; depends=[MeSHDbi]; };
-  MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.7.0"; sha256="1f93fnclsp6zmza6blwkfj5ncmxs8ihjqxr9dh8xjqciyb7wfmw5"; depends=[MeSHDbi]; };
+  MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.9.0"; sha256="0lll6xsxccxg04nnbchkq3rskzqj70czky27yhn99dpnb7cl2gpk"; depends=[MeSHDbi]; };
-  MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.7.0"; sha256="0328rxhmhhmspylzx7sdmk3mlbx9hndmpfc3fkrdr2n9a8zirlwp"; depends=[MeSHDbi]; };
+  MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.9.0"; sha256="0fny3nxwpihh505h54b82bf22p74xhf89xns9n7wgsg6j7zr1q49"; depends=[MeSHDbi]; };
-  MeSH_Eco_CFT073_eg_db = derive2 { name="MeSH.Eco.CFT073.eg.db"; version="1.4.0"; sha256="0r7hlxd5k9n9shq3wj5ldqj00apvx4bv8h38v2i4adv29s5x7973"; depends=[MeSHDbi]; };
+  MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.9.0"; sha256="0jklkvqwajnprs951ws5fxjxkx1dqmi7nldb854wciyanya7srbz"; depends=[MeSHDbi]; };
-  MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.7.0"; sha256="0x6sn0zhqm5gcd9is5ka5hg24kvlyk3qc4pnyjmc88cgfz90cqqq"; depends=[MeSHDbi]; };
+  MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.9.0"; sha256="0gmjpbqcrg700fi4qgg9cxny8rwclpg9sbrg2yqpnpiwfp3m1xp9"; depends=[MeSHDbi]; };
-  MeSH_Eco_HS_eg_db = derive2 { name="MeSH.Eco.HS.eg.db"; version="1.4.0"; sha256="0gyrfjyp3k5jbcg92qzz4fjpmk9m4i0v7q2yvja73sni6976g9ca"; depends=[MeSHDbi]; };
+  MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.9.0"; sha256="126xn0dgw08xdjw0sqm80v3pwqlmjzarifq1s3s81qkd814pij2y"; depends=[MeSHDbi]; };
-  MeSH_Eco_IAI1_eg_db = derive2 { name="MeSH.Eco.IAI1.eg.db"; version="1.4.0"; sha256="16mxh182ij25qgfk14dzzpvaac7fqcnzx58j5m6hfrz3wvgh9jrq"; depends=[MeSHDbi]; };
+  MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.9.0"; sha256="1zfq3h886x9kyislnl4mj6ksfmr4slmayw2f63wp3vhlqc8xlp6m"; depends=[MeSHDbi]; };
-  MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.7.0"; sha256="1ahln8fad45mvrg6scdaz1ilvj9wnb5mxww9jvzm33d1ik04j5sj"; depends=[MeSHDbi]; };
+  MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.9.0"; sha256="18n2aajv2m1s3y13w88jnxiwzmmqiplmp2la1fh6f34ywsc8vcf2"; depends=[MeSHDbi]; };
-  MeSH_Eco_K12_DH10B_eg_db = derive2 { name="MeSH.Eco.K12.DH10B.eg.db"; version="1.4.0"; sha256="00y5qlqrsjl941iaqln4m5jvskc2a6kildys881ml92f14cmgs07"; depends=[MeSHDbi]; };
+  MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.9.0"; sha256="1qhw2zbldsxr9mii73n5l2l3xgnnmfcdm5zlnj8q6maz0rg8npvc"; depends=[MeSHDbi]; };
-  MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.7.0"; sha256="0vdb038i7pj7bcnnn3rf22bj3knnx4vj1dpwijivh6w9gxfkqd4p"; depends=[MeSHDbi]; };
+  MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.9.0"; sha256="0siyszvzgy61f44mk6hgg215jin92i1bpyld932f3ydkb2cg1vii"; depends=[MeSHDbi]; };
-  MeSH_Eco_O127_H6_E2348_69_eg_db = derive2 { name="MeSH.Eco.O127.H6.E2348.69.eg.db"; version="1.4.0"; sha256="1as23bz0yylgf24sy84xm46bblvkacp84kjr2g8c9if1vll2x2dg"; depends=[MeSHDbi]; };
+  MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.9.0"; sha256="1r5ighzpbw3rbi9pv75xgdxz34yl7d4nimc3423fva6m25bl14f1"; depends=[MeSHDbi]; };
-  MeSH_Eco_O157_H7_EDL933_eg_db = derive2 { name="MeSH.Eco.O157.H7.EDL933.eg.db"; version="1.4.0"; sha256="0qnnp2a2v3nv1br1lg2km0p96q1knwa1fx95cg4wp38nc5g0jcc9"; depends=[MeSHDbi]; };
+  MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.9.0"; sha256="0m3f9vkl97drciv68qvb6b1zxg4376sgrxd5fn7r8v6jnk3764h6"; depends=[MeSHDbi]; };
-  MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.7.0"; sha256="02j5gi0199z9g6ghc4rsq7h9b5sigrq1a06hhl7rdm4bpa2sy8p1"; depends=[MeSHDbi]; };
+  MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.9.0"; sha256="0kbf04jgy9sdq99x7c3j6fk1d1p746sm5h0wgcc496hmj9f3d7xq"; depends=[MeSHDbi]; };
-  MeSH_Eco_S88_eg_db = derive2 { name="MeSH.Eco.S88.eg.db"; version="1.4.0"; sha256="15k44ricv7vi7sbw5s2nckm6jwbfzrrjp8ck06ydjp9q70hfzmhy"; depends=[MeSHDbi]; };
+  MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.9.0"; sha256="1s96nh30gg3q6agvd75h8wkmsna753wlhh79fb563plkhynila3j"; depends=[MeSHDbi]; };
-  MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.7.0"; sha256="0nv4w38w9s53jqv3zin3m61skl2gr27iizhqvrp961wy5kqyqwmj"; depends=[MeSHDbi]; };
+  MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.9.0"; sha256="0f49mvvrigq06m6wsf2bn5b2k06c5azfnzks8z8h91h7p1cdn239"; depends=[MeSHDbi]; };
-  MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.7.0"; sha256="1kdv46yjw9dw1ksw1f59gn51gl1vkp8xgk1bwl7fjk9ap7pgc924"; depends=[MeSHDbi]; };
+  MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.9.0"; sha256="1nlqqgwcaic49lr7qknm4fnr28iy5a5g8pln9ay5c94d82ihaanj"; depends=[MeSHDbi]; };
-  MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.7.0"; sha256="07ng6pri1666sv9hznxx8whk8wkj8mm969w3dlgi633fp9qsg507"; depends=[MeSHDbi]; };
+  MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.9.0"; sha256="0s8hfixk8axy155rhv9frnvdannm7fwv8xbnn4yqrqz97s0w3l8x"; depends=[MeSHDbi]; };
-  MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.7.0"; sha256="0sb4nab0fibbhms8h8izwxzdwdg450klnlnczksjka5rccl8na7l"; depends=[MeSHDbi]; };
+  MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.9.0"; sha256="0kc1zv1rlw6sg72z5if2ljyyb99nn9jj67z0x77zpjil15igjq0f"; depends=[MeSHDbi]; };
-  MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.7.0"; sha256="02mchzw2jc615g7xd9gb42vsjjyfpz8i6p36mrd0y4nr7mskxmr0"; depends=[MeSHDbi]; };
+  MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.9.0"; sha256="07n81wg4g7r554xs4ziv637mz22ycmn5h03v2a1bl4gfagmp2wga"; depends=[MeSHDbi]; };
-  MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.7.0"; sha256="10sl8qisbf8m49j2fvwbwhhp2w964gfnm8j273sy6ma1rdcj1df0"; depends=[MeSHDbi]; };
+  MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.9.0"; sha256="1sss6f5c039vic2kbxf5zchxx6qqdpysbwfb04xqn7vb0h5xs9aa"; depends=[MeSHDbi]; };
-  MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.7.0"; sha256="195g835jsswc9v1c0ycp4s1rgcfnwbramgk9vfrlwwiqis7yw358"; depends=[MeSHDbi]; };
+  MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.9.0"; sha256="1lmy5rqpsxrmcc1zshj2dygdyrw5i95bmp9d31686h2pf7rxjxa7"; depends=[MeSHDbi]; };
-  MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.7.0"; sha256="162rg0y1x1nr61vdzdv51ps4ilvybw6z2899xcchbvvpdgd2cxbz"; depends=[MeSHDbi]; };
+  MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.9.0"; sha256="1j892b88xpf1lcz6lv7n0b2lmqda3j6na6lm18qrmnydvihsrglz"; depends=[MeSHDbi]; };
-  MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.7.0"; sha256="1mj2p780nf8wnid2c2gkjrsbhrm8jyng03wa0wy83hs0gi38zp8k"; depends=[MeSHDbi]; };
+  MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.9.0"; sha256="0mnyhj6cfzgar0rsfzza9vydh3kiimyix732zm80gsj7xq844hs4"; depends=[MeSHDbi]; };
-  MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.7.0"; sha256="076wrm9g3ppijpsq7ggcl3ld9nrm0vh87g5wspc760fjd0xy2pgn"; depends=[MeSHDbi]; };
+  MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.9.0"; sha256="1gmlg22jdspcv6056iax16hk6vry739s7px1c0vpgmsblj8blzjv"; depends=[MeSHDbi]; };
-  MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.7.0"; sha256="0nzm1rl1qf2impsjns3cbp45kl4ld1a8icb3ip85r2hg2js85ifa"; depends=[MeSHDbi]; };
+  MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.9.0"; sha256="05qsamqm7dimvghka10z03shchx08gxaf7bv488djia9msw04l3w"; depends=[MeSHDbi]; };
-  MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.7.0"; sha256="0v30ia3wdicx38a4qaqafz5xblvdhpwzlxxdxka941v364dqvjvi"; depends=[MeSHDbi]; };
+  MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.9.0"; sha256="0h0027wgxm5ngk7087hcw1n2xx04q0sgfcpgmv2wn3f88mh42r9l"; depends=[MeSHDbi]; };
-  MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.7.0"; sha256="0j7l3w697jbf8wx2shnvs5hirpck0cwa7ik298gsjm9d5hwmjkwa"; depends=[MeSHDbi]; };
+  MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.9.0"; sha256="1cgbalyamgf1aj48ndhby8x3mzdwn8aiv9nrh8mpyz9zssl0ywdm"; depends=[MeSHDbi]; };
-  MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.7.0"; sha256="0nssphb6qs81i0hay1lmyvvvsj055rxwr21p46x4zlrqy01m9qxq"; depends=[MeSHDbi]; };
+  MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.9.0"; sha256="0wwnjqc0rvymh9fzh8l9hnlmaymchp54v9fqavxl3cwr2jjyyxis"; depends=[MeSHDbi]; };
-  MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.7.0"; sha256="0pn9hhs4h9i49kw64xc4rb25gfvrn72swncvhw33pbw5kdav3mmi"; depends=[MeSHDbi]; };
+  MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.9.0"; sha256="0s869r4pz02d9k4dcg7qxy75h44x6lli8hxm3f9fjmmvv6cv18zs"; depends=[MeSHDbi]; };
-  MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.7.0"; sha256="1mw04y6vdma7q8i456qbjga4ikswsrbg4r7l9k9dyq37rh53fqhj"; depends=[MeSHDbi]; };
+  MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.9.0"; sha256="07krh3k6d1q9dadphs07sapyv3dfmlhdmgcfrrramixx7paqqd1a"; depends=[MeSHDbi]; };
-  MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.7.0"; sha256="16b5wgr5wfhrv64za39k9kkqg1drscvnf1s98jw7inrlk3hc7cx3"; depends=[MeSHDbi]; };
+  MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.9.0"; sha256="03bs083cvgd5gwy0n2hqq08r8fzw426a4fjx7yg9ypp6316bp03b"; depends=[MeSHDbi]; };
-  MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.7.0"; sha256="0g2czpb0d47yrq161fzvkmra5gmv7vqjllrhxd6v8vc65kmjkcjb"; depends=[MeSHDbi]; };
+  MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.9.0"; sha256="0snydy5c7y0437qndc7ki3nswbr3jfj2fssdiqa3yfrbd4dgl8fs"; depends=[MeSHDbi]; };
-  MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.7.0"; sha256="15k2ymcn65hwjmp47azf7wn7b8d1mb8g6b9wxrpv2jw7cazr14j2"; depends=[MeSHDbi]; };
+  MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.9.0"; sha256="1g6q20hk4v2kwjj9shrwyrf068qv8zrz4dlv58id1im0h6kzi1bq"; depends=[MeSHDbi]; };
-  MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.7.0"; sha256="04yw89mswnpi52hz1fa4y0ds5lykhwbwlgf52fyjhcbjw43ldais"; depends=[MeSHDbi]; };
+  MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.9.0"; sha256="0wdwy7jqy47flyk25fv51l2acg7lisf240sli9snf0hl4rg2m8sh"; depends=[MeSHDbi]; };
-  MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.7.0"; sha256="09g0cgcbgyj59irvifqzbym9pyij3g4sqk95njd6xnlq57rw1awi"; depends=[MeSHDbi]; };
+  MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.9.0"; sha256="193amf74qwglzdpgc4b9f2g0jxs2s5ilfwzk5gpzzsyr6z19m8sx"; depends=[MeSHDbi]; };
-  MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.7.0"; sha256="09yrm1skqvbs6jfn5a6s2ky7ij2b5nvs0p3vbjcv3pfh60n0zxdl"; depends=[MeSHDbi]; };
+  MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.9.0"; sha256="1wpl49hsz2la272mp836cgqnncyddknrfbfalikwrbydcpdflmqj"; depends=[MeSHDbi]; };
-  MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.7.0"; sha256="0h4g20ndpbrasaxml6in3wff6ckl5dy3h7wli9zamvrljzh0qdza"; depends=[MeSHDbi]; };
+  MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.9.0"; sha256="0x1s4qs17sy7pz1bhlgfzgvixf50h4wcpa885600f5jv80piz10w"; depends=[MeSHDbi]; };
-  MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.7.0"; sha256="1ny0pqj05rz005fhi3nawixk0rj0jdnyd737359vbph79s82h4n5"; depends=[MeSHDbi]; };
+  MeSH_Spo_972h_eg_db = derive2 { name="MeSH.Spo.972h.eg.db"; version="1.9.0"; sha256="0959hmphr884az46y6zvsmi28vsz66y3jf09f2hki6cwg7gp28l2"; depends=[MeSHDbi]; };
-  MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.7.0"; sha256="0p62h8i0fx5vxac0xk54laibgsgmnpavpi5d6brjrddvxa4yqvx7"; depends=[MeSHDbi]; };
+  MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.9.0"; sha256="1fdwj5dpfpm8cbq5i1wk3n5qq0ygw876shpxiqlj7i7a8yrnikqg"; depends=[MeSHDbi]; };
-  MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.7.0"; sha256="10f6kxzdgpidig3jc8wfgkan5yx1c8brxnf6w2y62ba3nq5nhj1j"; depends=[MeSHDbi]; };
+  MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.9.0"; sha256="1mrmxpi4zkj77qnr5gsx7nnmhz3h7w07mji0khahd1cnkdqb455g"; depends=[MeSHDbi]; };
-  MeSH_Sau_USA300TCH1516_eg_db = derive2 { name="MeSH.Sau.USA300TCH1516.eg.db"; version="1.4.0"; sha256="109kvsdqvra8x392l82djbd46l8z4hv4z92785ivgdcnchsdjq7p"; depends=[MeSHDbi]; };
+  MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.9.0"; sha256="04wrimmnwhzqhk88jp059h5wpj0wh35ilgzfmn7m66igbiywsyiq"; depends=[MeSHDbi]; };
-  MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.7.0"; sha256="09df9issnh9adhwb5z6rxzll8d8gqpvg812p0xny7zx598hvjbyh"; depends=[MeSHDbi]; };
+  MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.9.0"; sha256="1wida7bmggiamd8bw7sx3sc84rjhpa6c7kgbz7ppf5z5zzabxwj8"; depends=[MeSHDbi]; };
-  MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.7.0"; sha256="047v0h1jrxacw33hd2iclrwzi441s60aq107ynzh549066r44l26"; depends=[MeSHDbi]; };
+  MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.9.0"; sha256="0s7792dcgh5ilanr4nnkfcf95j4yndsncr63ybw8g5kp14qw3b6i"; depends=[MeSHDbi]; };
-  MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.7.0"; sha256="19a6sq9yzc7q7515x7wxjdr74r3xxagfinzwgxvb13j2pcxl72qr"; depends=[MeSHDbi]; };
+  MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.9.0"; sha256="19g80bjw7h0f4w3mlrj56xmsdf46bjvs2bykf7hbz911qblkmd08"; depends=[MeSHDbi]; };
-  MeSH_Spo_972h_eg_db = derive2 { name="MeSH.Spo.972h.eg.db"; version="1.7.0"; sha256="01m12jm4wwkdh9zkajl1fh9193pkys23m33q0zxahvqaknainv3b"; depends=[MeSHDbi]; };
+  MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.9.0"; sha256="0x5amvf092r97zkzivsks99q4iaw9cnwpk2mjq8qjfrj2fg9mghc"; depends=[MeSHDbi]; };
-  MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.7.0"; sha256="08991vxjyqxybi91msicrxdxi60js6gynnhkxdybhcdn0rq3q03b"; depends=[MeSHDbi]; };
+  MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.9.0"; sha256="0h2kndx4xva57hhapzkwnk4by05vpcrgqakc5cpil11in9wwm4gw"; depends=[MeSHDbi]; };
-  MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.7.0"; sha256="188jk2yx2xkyd9nr55jx0w2ki6fk5a10hc39zzs8c7ilb6azj973"; depends=[MeSHDbi]; };
+  MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.9.0"; sha256="11gssp2rm9jln3bhallxhscn1vlp62yv1dqsshswzhda230pwsk8"; depends=[MeSHDbi]; };
-  MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.7.0"; sha256="0csch7hs1hvabrhpvm8hwv35iqhllisf3xr9j5b3lhysdxm9awha"; depends=[MeSHDbi]; };
+  MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.9.0"; sha256="1pn4v8hp2g9i6d0wn7yj28fg6nfrlxi2zw7svmqlqf0n15sj4g91"; depends=[MeSHDbi]; };
-  MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.7.0"; sha256="1qr5d4zf6778bqrmxynjzl0hjvfgfbk42wldw6c40cqa51caav5x"; depends=[MeSHDbi]; };
+  MeSH_db = derive2 { name="MeSH.db"; version="1.9.0"; sha256="1vljxgv6x7417sash10mjmwdqs6xmqhwxdsf5n8nn3bw283k0jkv"; depends=[MeSHDbi]; };
-  MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.7.0"; sha256="1cwb68y7sn8gnhwcm05dry9aaq2jjphvwfnl5yh0fddw7x31nsc6"; depends=[MeSHDbi]; };
-  MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.7.0"; sha256="0dbpxc3syrw5s59cwl36skzi9d5j557aacq0j5kcwahy8abb1pk9"; depends=[MeSHDbi]; };
-  MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.7.0"; sha256="06fckdyfrwdh3ijz6bcikr4fsd69adlcjb54brwqqaak14lf06w4"; depends=[MeSHDbi]; };
-  MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.7.0"; sha256="1wxh3lhbc8cy040dhkwjckxc2q6laxb8wrvzd1lg72vijzsnyvlg"; depends=[MeSHDbi]; };
-  MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.7.0"; sha256="1fz9l962w0mi8a6ch54xa4qn5v7kkva21n7q68yd4d4irm51dcac"; depends=[MeSHDbi]; };
-  MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.7.0"; sha256="0pfx33qs6m5m5i85ib8agbdg58w8g0af188rl0jdyxrfkbfaj9v9"; depends=[MeSHDbi]; };
-  MeSH_db = derive2 { name="MeSH.db"; version="1.7.0"; sha256="0zinr1wbbw3q05zcaq5xaqn0gqx9z9rdhdc89g1pj6f13mhs7zz3"; depends=[MeSHDbi]; };
   MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.3"; sha256="00d0yjcb5id7zacx4bzdwy4q6f4qvnnx8ph4d4xz1fmcbspz2qiz"; depends=[AnnotationDbi org_Mm_eg_db]; };
   MoExExonProbesetLocation = derive2 { name="MoExExonProbesetLocation"; version="1.15.0"; sha256="0bvj3bji4bwwmxjz4b57n1aqypdibdmry30rfwmlxss1hav96sl7"; depends=[AnnotationDbi]; };
   Mu15v1_db = derive2 { name="Mu15v1.db"; version="3.2.3"; sha256="0qchqkbx6ybijab8qhflxj33kwksfll1d3d3917vydjac9fzw1lz"; depends=[AnnotationDbi org_Mm_eg_db]; };
@@ -233,8 +230,8 @@ in with self; {
   Mus_musculus = derive2 { name="Mus.musculus"; version="1.3.1"; sha256="143zdf83gbfqhy8jm9df7gzhw5q3a64jrjrxrzjf0zd76j8s8j6y"; depends=[AnnotationDbi GenomicFeatures GO_db org_Mm_eg_db OrganismDbi TxDb_Mmusculus_UCSC_mm10_knownGene]; };
   Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; };
   OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.3"; sha256="1vsfhradfhk087vzi0jzkd7qab72g0v0x9s1rr7wblw7wjz48299"; depends=[AnnotationDbi RSQLite]; };
+  PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.4"; sha256="1vl8anixkhcb9axlszk479yaw48bz1hhgmff41nqk8k8w4jkyn1y"; depends=[AnnotationDbi RSQLite]; };
-  PFAM_db = derive2 { name="PFAM.db"; version="3.4.0"; sha256="1s50z6g6azm9jbxbfq2qlciapm31pv5rsylgpy4p0wsc9dbxh723"; depends=[AnnotationDbi]; };
+  PFAM_db = derive2 { name="PFAM.db"; version="3.5.0"; sha256="14c85j6ms6cqfifpsihn6ajk6b317gw2b904skv4dqclbgcg6ymx"; depends=[AnnotationDbi]; };
   POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; };
   PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; };
   PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
@@ -247,42 +244,41 @@ in with self; {
   SHDZ_db = derive2 { name="SHDZ.db"; version="3.2.3"; sha256="077xy2zx3f4c01di18ki32xmrwgsc1qjci3wj33nmgsy5925zdxs"; depends=[AnnotationDbi org_Hs_eg_db]; };
   SIFT_Hsapiens_dbSNP132 = derive2 { name="SIFT.Hsapiens.dbSNP132"; version="1.0.2"; sha256="1akqhmv9hp41q2jrvz4xvpdi30c4c6v4xbz6ykn6pdf0217p7xry"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
   SIFT_Hsapiens_dbSNP137 = derive2 { name="SIFT.Hsapiens.dbSNP137"; version="1.0.0"; sha256="1472abqanbwziyynr851xzhg7ck8w1n98ymmggg7s46hzix5mlj8"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
-  SNPlocs_Hsapiens_dbSNP_20090506 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20090506"; version="0.99.9"; sha256="10943wbc56mz8ywcd71ndbdz7h3a9a17mzfdvj237wsgp62arfh6"; depends=[BSgenome GenomicRanges IRanges]; };
-  SNPlocs_Hsapiens_dbSNP_20100427 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20100427"; version="0.99.7"; sha256="16m15sqxnczb399bcy7nll804h4955f6w8mag5jlda6h11yh732z"; depends=[GenomicRanges IRanges S4Vectors]; };
   SNPlocs_Hsapiens_dbSNP_20101109 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20101109"; version="0.99.7"; sha256="1r1gvx563gv1lidi099yw7lvf8c0983yck9yf8r8iypiz1d4az73"; depends=[GenomicRanges IRanges S4Vectors]; };
-  SNPlocs_Hsapiens_dbSNP_20110815 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20110815"; version="0.99.7"; sha256="0nvpa44xy7zb9q63max1q0pmfibh976blmnirryxcca20j41f8ic"; depends=[GenomicRanges IRanges S4Vectors]; };
+  SNPlocs_Hsapiens_dbSNP_20120608 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20120608"; version="0.99.11"; sha256="0a1nyni8h3a7sq2sj5jfn3w6abkl5lwzbzhb8kg74v4359albcgm"; depends=[BSgenome GenomicRanges IRanges]; };
-  SNPlocs_Hsapiens_dbSNP_20111119 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20111119"; version="0.99.7"; sha256="1znblqzb1hx5yjs2g387l3az8dga51si5blpwngvs0zbbdypgww8"; depends=[GenomicRanges IRanges S4Vectors]; };
+  SNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.11"; sha256="1dl5gs9iqdvaplvggpngp37pzgbjaavw98qppv2cp65ih9rn0wc0"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
-  SNPlocs_Hsapiens_dbSNP_20120608 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20120608"; version="0.99.10"; sha256="10crnx5jk2790h936j515jgdf2mirzzmlnvn6pbp81fd5imkvdpd"; depends=[BSgenome GenomicRanges IRanges]; };
-  SNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.10"; sha256="1a8ic2naa6bqc1fcylxc81j51xmc249fn40nk4yrvpjz59d6h381"; depends=[BSgenome GenomicRanges IRanges S4Vectors]; };
   SNPlocs_Hsapiens_dbSNP142_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP142.GRCh37"; version="0.99.5"; sha256="13kmgfwzwmbrwd2g24a3cbp634jih7jigzhzq55bzzf3js48h3n3"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges]; };
-  SNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.11"; sha256="069fkjplii6p63w8b3fjk87ynl5xv7d5bgnr78ia2n95yv6iqzjw"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
+  SNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.20"; sha256="1z8kx43ki1jvj7ms7pcybakcdimfwr6zpjvspkjmma97bdz093iz"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
-  SNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.11"; sha256="1wzxb7d8v3yx8fvra4yy1zyvvh0l53ad87ksp3i1xj413cvph671"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
+  SNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.20"; sha256="0yxmsnxncr7w30r0d7bg5i96pclm2vf40p9jdqa02rc67a6sximn"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
+  SNPlocs_Hsapiens_dbSNP149_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP149.GRCh38"; version="0.99.20"; sha256="17bv25p1261hn9d7mxfp6pvivj15pxyvr92gms8a8msfqg9y0xkb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
+  SNPlocs_Hsapiens_dbSNP150_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP150.GRCh38"; version="0.99.20"; sha256="0jkwwgxxpm9ry8kizq8hs70sky41pks1ag40y5aqq91yjbpqlckj"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
   TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.4.0"; sha256="1grg9vjsvlrcfdnn25q5rnr2d92ff73xfpv9fh215r23b552a5f5"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.4.2"; sha256="1p7yhxdlmr4fbp4mxakdwp2xf609ws6pyrjl8xq3ilzhf6fyypim"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.0"; sha256="0sz0jd08kh604kq830h4k5g7f3dpqq0dypz0jyc1hp7mf367h16b"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.2"; sha256="0g4l5r6mqvjsvq3q6kzlvi0w75hm2bxdq0p0pbdpdm8lf9d5aca3"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Celegans_UCSC_ce6_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce6.ensGene"; version="3.2.2"; sha256="1sgppva33cdy4isj2is8mfalj5gmmkpbkq9w1d83a4agcq31mi90"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.3.0"; sha256="0h0n3yqdzqip1ikqq396pziyn0l5651yg87bb0cgc3gy2ldsrl74"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.4.2"; sha256="19vr9wi2hspsij7gwq7wnlg94zlcqvn639z3jr8s3yngr89d9mnj"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Dmelanogaster_UCSC_dm3_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm3.ensGene"; version="3.2.2"; sha256="1337x23rdmiiza83ms225kri37h16q5hw1lw0m577abcgip3d7c7"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.3.0"; sha256="1kgwb63z37zq5mspqzf2rb09vl8b71kn8aa3fsmyn8phmhay98zw"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.4.1"; sha256="0sdw0gbk84lfjmiyy2x4q01zh1vbjq3vfziwxkb4h0v6nab63k01"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.0"; sha256="0vgvjb6jqzqgmnnqjx9qdn2by01p1pfrqd1ks91q2db6wqcm5jjv"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.2"; sha256="1cqc7vlv2jrznh9s0yb70nwy0a2pa7iswr4m253zx6p197igf33l"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.4.0"; sha256="07d21x4sw4gwszi32wjli9hczgr1g579pq0zyzndwvkibqawvdwh"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.4.2"; sha256="0d7wqrg69kj65rga9m473ji1s9251gvz6l071ibqmga31imrgb9l"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Ggallus_UCSC_galGal5_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal5.refGene"; version="3.4.2"; sha256="1j68yqfbnas21za7y63p1kpi85jbxb7l3m6i50ig9mp6mmvy7i26"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Hsapiens_BioMart_igis = derive2 { name="TxDb.Hsapiens.BioMart.igis"; version="2.3.2"; sha256="0590a2hkrpm33hmjg5g0gm6sig3xvc09m0q6lwmafgaajf90h6ky"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.4.0"; sha256="0i0xw0mcn403r911ijqdnrwg9k5bspdnjibfjvnhxq4h8vcfprn5"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.4.0"; sha256="0ap8qn2bza0j9ismnpv2l64wdbzc9i0q6sb1w195134hwq9cr51y"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.4.2"; sha256="1k2kaik3zvnx3giia1dps06073xkbvd4dva6npskkvzhvqpfxq41"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.4.0"; sha256="1d61p9aj2wv4gdx2q5g33j7hipzfj1a4zi6apn058cffy1clyrn9"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.4.2"; sha256="1wma6pm5v9qv29h76p7aj7kwq0l857as0wgya3ryj3mynhsf9j9j"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.4.0"; sha256="0saxi1fdiwd38sfvy1rynd3v44rbp158jv6sjqcivvaqnd84zg9s"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.4.0"; sha256="08gava9wsvpcqz51k2sni3pj03n5155v32d9riqbf305nbirqbkb"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Mmusculus_UCSC_mm9_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm9.knownGene"; version="3.2.2"; sha256="16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.4.0"; sha256="08kihk3sl1hw32rf8122y03grbg1xdbc84z1b2ldnf752xr4zn9x"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.4.2"; sha256="0gqrv5n1c63p5cdl1c0l866x9qgfqf6w23p6m12zaxn8riacdnyi"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Rnorvegicus_BioMart_igis = derive2 { name="TxDb.Rnorvegicus.BioMart.igis"; version="2.3.2"; sha256="1099vkk8g3lxbgjxsm1p1m3mjj08nsw282mqxgzpnrxf7m6jll76"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Rnorvegicus_UCSC_rn4_ensGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn4.ensGene"; version="3.2.2"; sha256="0gv8bynfxxa471ap069mjvfrb1d7a0c4w5k8hxkr4hnsm44mschm"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.4.0"; sha256="1p3m7g24x7pvavwix5r5kyqsklv7hxav23nz36cs7gsqh1ifizaq"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.4.2"; sha256="11yxvr20dmjjxw4pyxfnxy8znlxr48xqq9hb6k95y9dyqnir0vik"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.0"; sha256="1f1b16ya35x7x5x2j7a62qlg2ka5wd3521kfbk2xp4dr8h5ah6mx"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.1"; sha256="08w4279c5aq5pazbbdji344lxz113n763q8j2mlagcwfs9r5k9sk"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Scerevisiae_UCSC_sacCer2_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer2.sgdGene"; version="3.2.2"; sha256="0l5gcwhbvzx60p9hjhd31angamb0hkgdg2avga7341j77rd5pwza"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Scerevisiae_UCSC_sacCer3_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer3.sgdGene"; version="3.2.2"; sha256="1sjwl7fb3l3zxxbk8gkvzxwdsind0xjj7kmh7dachm6fi17hpb3d"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.4.0"; sha256="0jpvb3phw0967my7afk8scsjzpq1x0i2za534ndizzql3cp45yh7"; depends=[AnnotationDbi GenomicFeatures]; };
@@ -294,22 +290,22 @@ in with self; {
   agcdf = derive2 { name="agcdf"; version="2.18.0"; sha256="07hq41dwqs7yy2sck8p7zl3v9x4bgl35kkycpazz5ql2g5zy6b7j"; depends=[AnnotationDbi]; };
   agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; };
   alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.0.0"; sha256="1bcqn20a963l49ah3j59nmd5qd15qad56p7k3880q4cp7qza2xsw"; depends=[AnnotationHub]; };
-  anopheles_db0 = derive2 { name="anopheles.db0"; version="3.4.1"; sha256="0pzd8yij4ixdp48sr0ksjdmx3mw9gaizgj1rx33375a7091580yf"; depends=[AnnotationDbi]; };
+  anopheles_db0 = derive2 { name="anopheles.db0"; version="3.5.0"; sha256="0ycprvhry525p4hmxng2swcf92m9fsyqcj8na13q9i5p6s1sl5b2"; depends=[AnnotationDbi]; };
-  arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.4.1"; sha256="0rcpiaf0157c8v433a7khnam6g15siai1xbmf4gviw5vgw8l5a9l"; depends=[AnnotationDbi]; };
+  arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.5.0"; sha256="0xpa7d15av8pa2l5ksx8mcabhyfdxyk1hw2sd1gdyhyfcn7mjxky"; depends=[AnnotationDbi]; };
   ath1121501_db = derive2 { name="ath1121501.db"; version="3.2.3"; sha256="1zrf26cfhlmrb5pyfawwk4v8l1mflx8c43zsxrwkbmxzc1jnc7dv"; depends=[AnnotationDbi org_At_tair_db]; };
   ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; };
   ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; };
   barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; };
   barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; };
   bovine_db = derive2 { name="bovine.db"; version="3.2.3"; sha256="1i8mgk60hlmvngb4c727wajix9mca9gfg0pzxrnfcjwi87rpw7fy"; depends=[AnnotationDbi org_Bt_eg_db]; };
-  bovine_db0 = derive2 { name="bovine.db0"; version="3.4.1"; sha256="113pi0dr4jc0vr2gfm8pkavz72s16bw3l6ml3hmvzjy89yg9r0s0"; depends=[AnnotationDbi]; };
+  bovine_db0 = derive2 { name="bovine.db0"; version="3.5.0"; sha256="0h02wrj18c24rgkbdnva5qc3znn30i5357c9rzww7y4brhhww8ma"; depends=[AnnotationDbi]; };
   bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; };
   bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; };
   bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; };
   bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; };
   cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; };
   canine_db = derive2 { name="canine.db"; version="3.2.3"; sha256="0wbyzhk827l49yxzimvznx9z6yag5nd4djm2hddysf5nk1ndapqs"; depends=[AnnotationDbi org_Cf_eg_db]; };
-  canine_db0 = derive2 { name="canine.db0"; version="3.4.1"; sha256="11imzg70ffkfnb1q6i9q3mj033ncl9pmzpkv2wp3nc3l5nz8z2sg"; depends=[AnnotationDbi]; };
+  canine_db0 = derive2 { name="canine.db0"; version="3.5.0"; sha256="1a7qn0jg1yw8222k72058ymbws14fs0y6m4girxzs3v8xbyxji7v"; depends=[AnnotationDbi]; };
   canine2_db = derive2 { name="canine2.db"; version="3.2.3"; sha256="1gzd2x23dkfiwnwqz9pdn5lp4l8aby525mhscn3xakw633si4dvz"; depends=[AnnotationDbi org_Cf_eg_db]; };
   canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; };
   canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; };
@@ -319,20 +315,20 @@ in with self; {
   celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; };
   celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; };
   chicken_db = derive2 { name="chicken.db"; version="3.2.3"; sha256="1rq9afkpcpv8qi75shvnsw8di3ycai4ylv7jq9zwj51zlwlw9cpq"; depends=[AnnotationDbi org_Gg_eg_db]; };
-  chicken_db0 = derive2 { name="chicken.db0"; version="3.4.1"; sha256="0gfd9nrkdnjymqdssijp5r9mdj2r6bmnkf6y4xh6ri90b02d1xpf"; depends=[AnnotationDbi]; };
+  chicken_db0 = derive2 { name="chicken.db0"; version="3.5.0"; sha256="134ch8bgzjdra9pycs49lmak380qgx71dbmr1s276pyf3h67fzxp"; depends=[AnnotationDbi]; };
   chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; };
   chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; };
-  chimp_db0 = derive2 { name="chimp.db0"; version="3.4.1"; sha256="06z4kmpnsj98mi5j0ahz57grlbdqb8ycl8rf592561lvmzzdfs8h"; depends=[AnnotationDbi]; };
+  chimp_db0 = derive2 { name="chimp.db0"; version="3.5.0"; sha256="12smymvq4l7aw454lah9gd0rywgi3bcbd3vf8h6a93y2mnhdxz9q"; depends=[AnnotationDbi]; };
   citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; };
   citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; };
-  clariomdhumanprobeset_db = derive2 { name="clariomdhumanprobeset.db"; version="8.5.0"; sha256="0hb3bsdh79aajgb9vk34kpd61py6rxv4vm8ygzm531nrh44s7a33"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  clariomdhumanprobeset_db = derive2 { name="clariomdhumanprobeset.db"; version="8.7.0"; sha256="039bsywnim0nr8b3w6vkj4m20j0pggnm6ajjz24bnlikm9zzrs6l"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  clariomdhumantranscriptcluster_db = derive2 { name="clariomdhumantranscriptcluster.db"; version="8.5.0"; sha256="1kfv4f0jbd4a63mk83jhpbhfhlyka9hwfik7i52kszkb8grgz48d"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  clariomdhumantranscriptcluster_db = derive2 { name="clariomdhumantranscriptcluster.db"; version="8.7.0"; sha256="0lp6qb4f3qsm3krcagl5fd403i5yz5apimf57wlrj99r8zrax4s2"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  clariomshumanhttranscriptcluster_db = derive2 { name="clariomshumanhttranscriptcluster.db"; version="8.5.0"; sha256="07x7gl4p9dyrk41hx6d5ddsj3raz7gqimc79irfia2ismazwvd95"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  clariomshumanhttranscriptcluster_db = derive2 { name="clariomshumanhttranscriptcluster.db"; version="8.7.0"; sha256="1f9lqyr0slynb317vp4bys3s9y9ivxnyayy6zh8cilsdz64glzmj"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  clariomshumantranscriptcluster_db = derive2 { name="clariomshumantranscriptcluster.db"; version="8.5.0"; sha256="0h4i35pglq6mwxxflg7l09f8a1xvhnrjygns54bnv8cyj97vq2a3"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  clariomshumantranscriptcluster_db = derive2 { name="clariomshumantranscriptcluster.db"; version="8.7.0"; sha256="0f6g20zymxnamhspv18cz32qd842nxwyf8mwznsn5yhf3brab437"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  clariomsmousehttranscriptcluster_db = derive2 { name="clariomsmousehttranscriptcluster.db"; version="8.5.0"; sha256="1qvn0dpakh7g43wrssg2wyy5zi5axs7bqfmc97d8jgk56rwyzh46"; depends=[AnnotationDbi org_Mm_eg_db]; };
+  clariomsmousehttranscriptcluster_db = derive2 { name="clariomsmousehttranscriptcluster.db"; version="8.7.0"; sha256="0xzzyy8ppwgii0ymkg4agrhw84qgb6hdr8pyh8flyqyd2xbih9xa"; depends=[AnnotationDbi org_Mm_eg_db]; };
-  clariomsmousetranscriptcluster_db = derive2 { name="clariomsmousetranscriptcluster.db"; version="8.5.0"; sha256="17y506pcfq8x9g4xl6wm9di545bgbzc54mjlybmz19c56456z5w9"; depends=[AnnotationDbi org_Mm_eg_db]; };
+  clariomsmousetranscriptcluster_db = derive2 { name="clariomsmousetranscriptcluster.db"; version="8.7.0"; sha256="1rf06mj4s6dqi77982wjjs0ssb53j4rk7q4k9wq6iwj4xgz29npk"; depends=[AnnotationDbi org_Mm_eg_db]; };
-  clariomsrathttranscriptcluster_db = derive2 { name="clariomsrathttranscriptcluster.db"; version="8.5.0"; sha256="18dxnpvck3qfw660mx70d8psa1grzv9h43zf36qa6m958ybmcq19"; depends=[AnnotationDbi org_Rn_eg_db]; };
+  clariomsrathttranscriptcluster_db = derive2 { name="clariomsrathttranscriptcluster.db"; version="8.7.0"; sha256="10qh0cz0jyy88nh43p3f0i588r0d8xqkgjr6s62i1273bkrpijr4"; depends=[AnnotationDbi org_Rn_eg_db]; };
-  clariomsrattranscriptcluster_db = derive2 { name="clariomsrattranscriptcluster.db"; version="8.5.0"; sha256="1ds9vssyg9zpp99zzd6110k1x9v2ji455k7xmk4nd699y1vfc67x"; depends=[AnnotationDbi org_Rn_eg_db]; };
+  clariomsrattranscriptcluster_db = derive2 { name="clariomsrattranscriptcluster.db"; version="8.7.0"; sha256="1gh3jimr6jjkgh3zgvw9s1gynyawz8gckm9xghwsl9rii7vzy135"; depends=[AnnotationDbi org_Rn_eg_db]; };
   cottoncdf = derive2 { name="cottoncdf"; version="2.18.0"; sha256="0xfwwla941fbxddykgizpar8dh8q459src7kc5wyrsd3swp3zyp5"; depends=[AnnotationDbi]; };
   cottonprobe = derive2 { name="cottonprobe"; version="2.18.0"; sha256="04mfjd3a7ikif4pv46s6h9dj2s912w8ihg4yyiii7s3jlmvy62ah"; depends=[AnnotationDbi]; };
   cyp450cdf = derive2 { name="cyp450cdf"; version="2.18.0"; sha256="1mbqn9940sxc0ksvykdk3i4jvnkv9q91igwn1rwmv2z18hz18qf0"; depends=[AnnotationDbi]; };
@@ -345,43 +341,19 @@ in with self; {
   ecoli2_db = derive2 { name="ecoli2.db"; version="3.2.3"; sha256="07vc5fl2zq2f65ndcldyzvwfpl65snp6ygvw658j4036lbb7cpjl"; depends=[AnnotationDbi org_EcK12_eg_db]; };
   ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; };
   ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; };
-  ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.4.1"; sha256="1v9qa6pxwwc3ykh8nasi42vld07c9il0j72vfc8lpsxi9v56l5cs"; depends=[AnnotationDbi]; };
+  ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.5.0"; sha256="0g11rjb0373dc3a5m4padk43p4l204yw4lmvasnvk0p6cl0c4zlw"; depends=[AnnotationDbi]; };
-  ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.4.1"; sha256="18shfvqbv925xi694zv8c1mfxndrnsmkxdncncld11ra17wqs6cp"; depends=[AnnotationDbi]; };
+  ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.5.0"; sha256="1cwafxgai0lfwv7fdicrla3lj6k5lv7wz3vz6a0vqzhna3wb3ajz"; depends=[AnnotationDbi]; };
   ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; };
   ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; };
   ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; };
   ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; };
-  fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.4.0"; sha256="1nlbmzngg077p1bz462qsyvhc9k6pn2vzmvmsqs0hwrxsk2myvgq"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
+  fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.6.0"; sha256="08wfrcmbpgbgfzfr9gpg25073905fhz14s8jz2wckdmhwjlgavky"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
-  fly_db0 = derive2 { name="fly.db0"; version="3.4.1"; sha256="10bh5mrl163w433fr8g8n5b190wqcldxvxdamw13gwn79hymbjr4"; depends=[AnnotationDbi]; };
+  fly_db0 = derive2 { name="fly.db0"; version="3.5.0"; sha256="18r1m5b6v4km9cdyd0pkxvargh2bcz876y8iwqhbxkf16b9d70qj"; depends=[AnnotationDbi]; };
-  gahgu133a_db = derive2 { name="gahgu133a.db"; version="2.2.0"; sha256="1ikyvj1gi39qbakpn5wl0823ljavng1k33zvpf2k24jdhdw927qb"; depends=[AnnotationDbi]; };
-  gahgu133acdf = derive2 { name="gahgu133acdf"; version="2.2.1"; sha256="0hvd4iwj2fjiqp1jzbz68i1w6jn77nrsih316jlj85bhb35f7cyv"; depends=[]; };
-  gahgu133aprobe = derive2 { name="gahgu133aprobe"; version="2.2.1"; sha256="108lki2bg55ysh485shxxsz1imm26g5a3grgcmxbfs4pgna3g4h0"; depends=[AnnotationDbi]; };
-  gahgu133b_db = derive2 { name="gahgu133b.db"; version="2.2.0"; sha256="06hyjnr387wk40jjdk8gzqpfp4afjzva9fky3l4qs249ycy4snic"; depends=[AnnotationDbi]; };
-  gahgu133bcdf = derive2 { name="gahgu133bcdf"; version="2.2.1"; sha256="0qbqirflzjy0is3m9zca1660aszxf947fa7d26baw6vm2b37qg4q"; depends=[]; };
-  gahgu133bprobe = derive2 { name="gahgu133bprobe"; version="2.2.1"; sha256="1i8wcnp8434f6zxib86yhpm904clwg907x1hgjfsgy4viqa4jbqv"; depends=[AnnotationDbi]; };
-  gahgu133plus2_db = derive2 { name="gahgu133plus2.db"; version="2.2.0"; sha256="1p48q1zqrjdvv6qq5br9v24fpryp2zy3z079nkgrgr4d2brvhab8"; depends=[AnnotationDbi]; };
-  gahgu133plus2cdf = derive2 { name="gahgu133plus2cdf"; version="2.2.1"; sha256="1fmv6rrjbii1g5grcvgl13w814mbqqyqyav0wi82d30v4ijz58g9"; depends=[]; };
-  gahgu133plus2probe = derive2 { name="gahgu133plus2probe"; version="2.2.1"; sha256="0r3vizwmvy0jmsqbplagkincj5xs71dk7csgwwv4arx80kbl9l9l"; depends=[AnnotationDbi]; };
-  gahgu95av2_db = derive2 { name="gahgu95av2.db"; version="2.2.0"; sha256="1c1hc79rjisx7jd7sdlr2d1lnk621y8azshriia12b5z0l5j9m4h"; depends=[AnnotationDbi]; };
-  gahgu95av2cdf = derive2 { name="gahgu95av2cdf"; version="2.2.1"; sha256="1ckcjlb4v9x9zynf5w1h5fgmdr4ck22h9bjfwz3n184v48wgi39r"; depends=[]; };
-  gahgu95av2probe = derive2 { name="gahgu95av2probe"; version="2.2.1"; sha256="033zk49kp4r5in6yk3za8ll5wrchiklfrzc10c8lgqhpm6y8y5k2"; depends=[AnnotationDbi]; };
-  gahgu95b_db = derive2 { name="gahgu95b.db"; version="2.2.0"; sha256="0v4lpbqqhm6mvpm0biykcq0ym1rb968zcwp9rg1lv6zka5arj9fq"; depends=[AnnotationDbi]; };
-  gahgu95bcdf = derive2 { name="gahgu95bcdf"; version="2.2.1"; sha256="1f8yp4g3cjbl11x0wajln7bms3jhy6cbyh0bggm38gbb18gws4wg"; depends=[]; };
-  gahgu95bprobe = derive2 { name="gahgu95bprobe"; version="2.2.1"; sha256="1lr91f57ym3lxz5bi9xm3g63vskw5js991h5zk4c2i2npi0x22gm"; depends=[AnnotationDbi]; };
-  gahgu95c_db = derive2 { name="gahgu95c.db"; version="2.2.0"; sha256="1psjf511agrv7nma4wa39jgd82z82df42d5g8jvwjrm2wb6l2v4l"; depends=[AnnotationDbi]; };
-  gahgu95ccdf = derive2 { name="gahgu95ccdf"; version="2.2.1"; sha256="1lcal0y48vhafikkrn744l1gxrnlhkh7jmmhb7pglc9ldh7x9azh"; depends=[]; };
-  gahgu95cprobe = derive2 { name="gahgu95cprobe"; version="2.2.1"; sha256="155vnch85m6ph7av8j4ylrqajm3vc2v623qpkixqh06l4fy59pck"; depends=[AnnotationDbi]; };
-  gahgu95d_db = derive2 { name="gahgu95d.db"; version="2.2.0"; sha256="0k0ricb8cl3xh93nq8rr3206w18b91ca67992cc5b2fbaf8lxlba"; depends=[AnnotationDbi]; };
-  gahgu95dcdf = derive2 { name="gahgu95dcdf"; version="2.2.1"; sha256="181h5i9ywpn6vwdvcd2sq5yxkx41h09plgqsdfigw5w7816524k6"; depends=[]; };
-  gahgu95dprobe = derive2 { name="gahgu95dprobe"; version="2.2.1"; sha256="0znll2h3cm1sbyzjk121fxizs4qv5jd80kslr5zhdd73dkdlzlbm"; depends=[AnnotationDbi]; };
-  gahgu95e_db = derive2 { name="gahgu95e.db"; version="2.2.0"; sha256="1qbsshgvzfavpjrawn3lbl0pcfwl0g7n8vr1109gvax6gj00la7n"; depends=[AnnotationDbi]; };
-  gahgu95ecdf = derive2 { name="gahgu95ecdf"; version="2.2.1"; sha256="1bsh380h7ai4l6j8jjz8yzfdwgxyhpnqm5fnb6mgma76xbiwab4b"; depends=[]; };
-  gahgu95eprobe = derive2 { name="gahgu95eprobe"; version="2.2.1"; sha256="0c4zx8d7qsb3xhy0prfh7l6xbklgpxbbznqhq9mmgjb8qh5g9ygz"; depends=[AnnotationDbi]; };
   genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; };
   genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; };
   gp53cdf = derive2 { name="gp53cdf"; version="2.18.0"; sha256="11p69rxia8bqajix3jg34vnhczyxgpq50k5kdh878h7bn0mpg6bj"; depends=[AnnotationDbi]; };
-  grasp2db = derive2 { name="grasp2db"; version="0.1.14"; sha256="14y25k1fwh0272ws83rcpi25wc97r4z5mpmck8q9i9nshd5dmym4"; depends=[AnnotationHub digest dplyr GenomeInfoDb RSQLite]; };
+  grasp2db = derive2 { name="grasp2db"; version="1.1.0"; sha256="1aq19myhcl9kdmzy8f4c3ilf0s0ng99rl58jja2xlmqsm2hik7ya"; depends=[AnnotationHub dbplyr digest dplyr GenomeInfoDb RSQLite]; };
-  greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="0.99.0"; sha256="1ssh015yspl470wq5rnkxkb7xid27gzvga3hx9a9vj08iqal3rbq"; depends=[metagenomeFeatures]; };
+  greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="1.0.0"; sha256="0y9570c7cchwv9d5rgwhfz6k5qmi11g2smqq8q23z66iv333kii1"; depends=[metagenomeFeatures]; };
   h10kcod_db = derive2 { name="h10kcod.db"; version="3.4.0"; sha256="0f30n339ib8q478a7axjdh8hzrqws762m680ha0sxm3a0nxwapgg"; depends=[AnnotationDbi org_Hs_eg_db]; };
   h20kcod_db = derive2 { name="h20kcod.db"; version="3.4.0"; sha256="0csh59bgpn5xyaw6bfg7nvi9vcvjd4f66f0dr3xh7c6316835mnx"; depends=[AnnotationDbi org_Hs_eg_db]; };
   hapmap370k = derive2 { name="hapmap370k"; version="1.0.1"; sha256="0n6rmrqcbl665a1l6jxk1gn6518x4gxadzy5dc9k9v01cbh3qzmw"; depends=[]; };
@@ -452,8 +424,8 @@ in with self; {
   hom_Sc_inp_db = derive2 { name="hom.Sc.inp.db"; version="3.1.2"; sha256="0l9nly3k7jnf6g1qnwyw22ga1hdyjdvn3hrlway8pb9rv7279bil"; depends=[AnnotationDbi]; };
   hs25kresogen_db = derive2 { name="hs25kresogen.db"; version="2.5.0"; sha256="1yp25ifm3bwzkzm8vimlxw5slini7drhvmh5ggh0z80sfrjyndyf"; depends=[AnnotationDbi org_Hs_eg_db]; };
   hspeccdf = derive2 { name="hspeccdf"; version="0.99.1"; sha256="07azl9zpg552ic7li14p6n09ba3jbqqclwffjfpd2vc249x0n4fw"; depends=[AnnotationDbi]; };
-  hta20probeset_db = derive2 { name="hta20probeset.db"; version="8.5.0"; sha256="0d1gydcxgcxgchg7imlbkc6acz6py894v6m2i7wl6mpm793az7r6"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  hta20probeset_db = derive2 { name="hta20probeset.db"; version="8.7.0"; sha256="12m58w0av2b806w75df7spg72d0v7mr7vlhsgdc9h221r0g06vgx"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  hta20transcriptcluster_db = derive2 { name="hta20transcriptcluster.db"; version="8.5.0"; sha256="114l2jh1zg4jiirw2gp5djp7x4yf9l9x4hrxfflzzk2b0gc66fwk"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  hta20transcriptcluster_db = derive2 { name="hta20transcriptcluster.db"; version="8.7.0"; sha256="1aipxv8c6dwhhhxp0r75j79k038qk4jkmxcdzqiph3k0ylpikmb8"; depends=[AnnotationDbi org_Hs_eg_db]; };
   hthgu133a_db = derive2 { name="hthgu133a.db"; version="3.2.3"; sha256="0sgi7pbkndcpl775qn36rdlsm4j6ip2lfk0cmkh8zqryrj3yq6hh"; depends=[AnnotationDbi org_Hs_eg_db]; };
   hthgu133acdf = derive2 { name="hthgu133acdf"; version="2.18.0"; sha256="1a5b421lx0nxy3mrrxjxifwjpnv289c5q2a89xhnkwlcfhqlzqrp"; depends=[AnnotationDbi]; };
   hthgu133afrmavecs = derive2 { name="hthgu133afrmavecs"; version="1.3.0"; sha256="0466xgi67r5rpp7cs06ib0cr6vvx8d881g5l96b8sh9948pbn4ss"; depends=[]; };
@@ -493,20 +465,20 @@ in with self; {
   hu6800subccdf = derive2 { name="hu6800subccdf"; version="2.18.0"; sha256="1xir2k62whqf39g7g5rm646nz6hxq83nldrrc3cyzch85723a55p"; depends=[AnnotationDbi]; };
   hu6800subdcdf = derive2 { name="hu6800subdcdf"; version="2.18.0"; sha256="1caiyyna5ffnnx85h9f62h2fwd42wwi187g9igspcy8mn2hakpfw"; depends=[AnnotationDbi]; };
   huex_1_0_st_v2frmavecs = derive2 { name="huex.1.0.st.v2frmavecs"; version="1.1.0"; sha256="0fnadflyg615v7w071jilg42w8w5fvnac7rm0wg33klvzx9c9knx"; depends=[]; };
-  huex10stprobeset_db = derive2 { name="huex10stprobeset.db"; version="8.5.0"; sha256="0yrc5hf2yhxr33xr7mlrljbndbxl1mcv1ylnfak8wnhkzlbz5ir1"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  huex10stprobeset_db = derive2 { name="huex10stprobeset.db"; version="8.7.0"; sha256="14m5rkn9nksn84dlcl29wpahxsxhaswkcnc75mbsfagk5fh2qybj"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  huex10sttranscriptcluster_db = derive2 { name="huex10sttranscriptcluster.db"; version="8.5.0"; sha256="1ybxzqqpxfdjpw7mkyn1ydyghgsv5yfp27byi3yifpjz3ymm0lzi"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  huex10sttranscriptcluster_db = derive2 { name="huex10sttranscriptcluster.db"; version="8.7.0"; sha256="1xdsrx34625ad6sjkq166i8xlmwdwhsisi8dbjj6zkazg4mbxhd0"; depends=[AnnotationDbi org_Hs_eg_db]; };
   hugene_1_0_st_v1frmavecs = derive2 { name="hugene.1.0.st.v1frmavecs"; version="1.1.0"; sha256="0jwk5mm37fil3h9h1hrc4bm3sxfdzywbmsqm1blvrvb5q6jgl50a"; depends=[]; };
-  hugene10stprobeset_db = derive2 { name="hugene10stprobeset.db"; version="8.5.0"; sha256="1sh6ca1abnd5a09rcpa99gfpcnl0vjk49v8hnkbrzlrm8b6z603a"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  hugene10stprobeset_db = derive2 { name="hugene10stprobeset.db"; version="8.7.0"; sha256="170fdxmhbi6k115gbmvsmmq6hphbmj7yw23ycsjr9v963pwjk0ml"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  hugene10sttranscriptcluster_db = derive2 { name="hugene10sttranscriptcluster.db"; version="8.5.0"; sha256="0ydqq477ms68q8g7k8zj5mz609cdyk5ly5mxvvkzpbfrw7r663jd"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  hugene10sttranscriptcluster_db = derive2 { name="hugene10sttranscriptcluster.db"; version="8.7.0"; sha256="11wr9d6bp7yf66hdfx3vnp88brwkxwbxvfdnwyyffdpcaa92c6s3"; depends=[AnnotationDbi org_Hs_eg_db]; };
   hugene10stv1cdf = derive2 { name="hugene10stv1cdf"; version="2.18.0"; sha256="1drsclrcf344z4m61qxd1a1lg2qrd2h7s3y6kk7xcy76s2mqjx2f"; depends=[AnnotationDbi]; };
   hugene10stv1probe = derive2 { name="hugene10stv1probe"; version="2.18.0"; sha256="1cn6hdw1mj0i4f0syvx8g1r02bbki994y3s9hrdps3kvcbaw6brd"; depends=[AnnotationDbi]; };
-  hugene11stprobeset_db = derive2 { name="hugene11stprobeset.db"; version="8.5.0"; sha256="1akfj1z69s5kda10rybbpx0gl1ziwjq8nf0vr0sd24vzn3z0ml34"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  hugene11stprobeset_db = derive2 { name="hugene11stprobeset.db"; version="8.7.0"; sha256="0nnq0mm04qlzfdslmwhjdww76h2zww4bdqfvs53580qzxnsbw2nl"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  hugene11sttranscriptcluster_db = derive2 { name="hugene11sttranscriptcluster.db"; version="8.5.0"; sha256="1shmhzqy5zjaj564j6gfhs5plg3rhiz46qk2mkm7xyysgkjwwq90"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  hugene11sttranscriptcluster_db = derive2 { name="hugene11sttranscriptcluster.db"; version="8.7.0"; sha256="11m9nc1l4rm8mwsnkiak7wdh6593q5x982k7iva4id8qrafykddx"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  hugene20stprobeset_db = derive2 { name="hugene20stprobeset.db"; version="8.5.0"; sha256="1bxhlz983ar0m72rlv3vyqkl9gyqkndyv896yyim09ah8hpln24k"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  hugene20stprobeset_db = derive2 { name="hugene20stprobeset.db"; version="8.7.0"; sha256="047jc40r5z13xwxi1g64xvv8jkdx4k2xn53fqc87nm0qrcz4h1rm"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.5.0"; sha256="1cz6080w523j1dvbrgslkw1qs9bspci7086azz0xn4pmqjrkr78i"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.7.0"; sha256="0ba3yvizj9ya61rr9ik2hdxhy0q67908x16n58jjjfq8wf96h7sp"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.5.0"; sha256="0wcjldj9vxf73c2j9wmkra4kfd3n34yhicj53svgkcb2s9ldj8mq"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.7.0"; sha256="0chkxxpfl696qqiai3i30ylpsihyicbs0hbcni6nmnhfz9k5800g"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.5.0"; sha256="0ndcpkkqa5bq8g70bf1119vs1pj0hzkqlmm1bxy3zw86by06gass"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.7.0"; sha256="0wk2lg74zkgxh6frmikhk4bxndiyvc1j7mhvz65w8fxfqiwfyf5i"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  human_db0 = derive2 { name="human.db0"; version="3.4.1"; sha256="0dpxa3ifmqsg63rzcz333iqkhg8hjipfyvl18899d11cxxcm9wh7"; depends=[AnnotationDbi]; };
+  human_db0 = derive2 { name="human.db0"; version="3.5.0"; sha256="0n1qrah9h7n4cjpvhqrimcl42p413i2wmkw6iglqg1gcbkbrihvh"; depends=[AnnotationDbi]; };
   human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; };
   human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; };
   human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; };
@@ -544,7 +516,7 @@ in with self; {
   m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; };
   maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; };
   maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; };
-  malaria_db0 = derive2 { name="malaria.db0"; version="3.4.1"; sha256="041qsj8dkpavjs444v5fyhfzl7p6s2fx6ny16m36ak3g0w528bnf"; depends=[AnnotationDbi]; };
+  malaria_db0 = derive2 { name="malaria.db0"; version="3.5.0"; sha256="1q6m85ck84qg3fksmfmcrqd0s2yll9n6c3rcknh5ndmy30wdn9pl"; depends=[AnnotationDbi]; };
   medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; };
   medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; };
   mgu74a_db = derive2 { name="mgu74a.db"; version="3.2.3"; sha256="0xd2gbvry061409kiwq99i13641g8x6m9kbgg4yr0x6m9dh7hxa8"; depends=[AnnotationDbi org_Mm_eg_db]; };
@@ -585,20 +557,20 @@ in with self; {
   moe430b_db = derive2 { name="moe430b.db"; version="3.2.3"; sha256="0hb6pa07j5hdirpprcm9vdszbh5bkgf38gyp3g0gqvlc32nklv58"; depends=[AnnotationDbi org_Mm_eg_db]; };
   moe430bcdf = derive2 { name="moe430bcdf"; version="2.18.0"; sha256="0yl5pkqj37188k2yvvsqhnhm2vx523r11sry976bwzcadlicfhvb"; depends=[AnnotationDbi]; };
   moe430bprobe = derive2 { name="moe430bprobe"; version="2.18.0"; sha256="1nziw3pj4picz0aazblpqkbw82wq3vdajh9i78yfvlz1bwb2vpfi"; depends=[AnnotationDbi]; };
-  moex10stprobeset_db = derive2 { name="moex10stprobeset.db"; version="8.5.0"; sha256="15i8fqp6r5q39pyhnpfqcwpqw4iar1yf9id391js0fbpz01n0hq1"; depends=[AnnotationDbi org_Mm_eg_db]; };
+  moex10stprobeset_db = derive2 { name="moex10stprobeset.db"; version="8.7.0"; sha256="18cgynzjvfwj65v06b0fmxk1b13jlpd7ljaif9hp74hk6hs6gha9"; depends=[AnnotationDbi org_Mm_eg_db]; };
-  moex10sttranscriptcluster_db = derive2 { name="moex10sttranscriptcluster.db"; version="8.5.0"; sha256="0idxw02vyyspkbcd80al8h3l991v9n93d5cfag9f54hriz6ra5q8"; depends=[AnnotationDbi org_Mm_eg_db]; };
+  moex10sttranscriptcluster_db = derive2 { name="moex10sttranscriptcluster.db"; version="8.7.0"; sha256="1nmswvrbh9awp2bk2lbklasng9m74d12yqhxy502wnlc8s18h482"; depends=[AnnotationDbi org_Mm_eg_db]; };
   mogene_1_0_st_v1frmavecs = derive2 { name="mogene.1.0.st.v1frmavecs"; version="1.1.0"; sha256="00lyakg7dhsm3jkh011mfq1vy439mds64zpm6fgyq592x3k9w2ah"; depends=[]; };
-  mogene10stprobeset_db = derive2 { name="mogene10stprobeset.db"; version="8.5.0"; sha256="08nc0qn8kn4nfsxv0nxyrs9d3rw4schgl1k9sfhav1a0zp9gak5a"; depends=[AnnotationDbi org_Mm_eg_db]; };
+  mogene10stprobeset_db = derive2 { name="mogene10stprobeset.db"; version="8.7.0"; sha256="1yxl29fpp37h2w3sq2v9lmiks4m9ip9hlmasisxmqd5cvs2wnpmj"; depends=[AnnotationDbi org_Mm_eg_db]; };
-  mogene10sttranscriptcluster_db = derive2 { name="mogene10sttranscriptcluster.db"; version="8.5.0"; sha256="005ahfhnhdxfivhwk1qifph9civ4411clq9h7km9m4ldn0bsg23r"; depends=[AnnotationDbi org_Mm_eg_db]; };
+  mogene10sttranscriptcluster_db = derive2 { name="mogene10sttranscriptcluster.db"; version="8.7.0"; sha256="1k96334hvb17kxfvgiwih3pp2474fdcck9yv3h9jaf2mbbzg2q6z"; depends=[AnnotationDbi org_Mm_eg_db]; };
   mogene10stv1cdf = derive2 { name="mogene10stv1cdf"; version="2.18.0"; sha256="1zhq08zsghck39ly7ymcjanzgw3xy1hqw435hwcrrlipv6i4lbmj"; depends=[AnnotationDbi]; };
   mogene10stv1probe = derive2 { name="mogene10stv1probe"; version="2.18.0"; sha256="1qjnsf6cv23gnqdpcy1xqxy807y91fnaiyh95hg99v932pvika6a"; depends=[AnnotationDbi]; };
-  mogene11stprobeset_db = derive2 { name="mogene11stprobeset.db"; version="8.5.0"; sha256="1zkhix305yn3s3a9bvngi62gcnmr516cr48i9mcfc4wm32vlvqwx"; depends=[AnnotationDbi org_Mm_eg_db]; };
+  mogene11stprobeset_db = derive2 { name="mogene11stprobeset.db"; version="8.7.0"; sha256="02lfkn65r4ylmjz1gy9qm63ia3javj601vm2yw06vpn9r0mkw74v"; depends=[AnnotationDbi org_Mm_eg_db]; };
-  mogene11sttranscriptcluster_db = derive2 { name="mogene11sttranscriptcluster.db"; version="8.5.0"; sha256="0ginnqn5p5gqha2w888i3v62qr1as4vfa3ffid3g6ylc7wr8q57c"; depends=[AnnotationDbi org_Mm_eg_db]; };
+  mogene11sttranscriptcluster_db = derive2 { name="mogene11sttranscriptcluster.db"; version="8.7.0"; sha256="09fw9fsk0nqmyinhfjf8aqkfix7m7kjnf27xq85x4zf1vgbw2kl9"; depends=[AnnotationDbi org_Mm_eg_db]; };
-  mogene20stprobeset_db = derive2 { name="mogene20stprobeset.db"; version="8.5.0"; sha256="1wlnbz5lycwpcj152yf683gvidymr9clyrq3sknkskdqkk6m0k11"; depends=[AnnotationDbi org_Mm_eg_db]; };
+  mogene20stprobeset_db = derive2 { name="mogene20stprobeset.db"; version="8.7.0"; sha256="0a56rxqrv1vyykv8nmnq6682s3sxzwyrcjr29h585zy5w0gnvygp"; depends=[AnnotationDbi org_Mm_eg_db]; };
-  mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.5.0"; sha256="1pk5z46pgj1fknknsl0cxpfmrnkss69c9apw5nxvg3kjm4m3zsyv"; depends=[AnnotationDbi org_Mm_eg_db]; };
+  mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.7.0"; sha256="1s7cdjglrc9qqf3gsmhsyycfa0h5qrbk28i4z3z4mb9g6242r1r4"; depends=[AnnotationDbi org_Mm_eg_db]; };
-  mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.5.0"; sha256="04j1ga7jfgp72pwa99p5yd7g4vk0k5964srdrpr7p9xi5664ac4r"; depends=[AnnotationDbi org_Mm_eg_db]; };
+  mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.7.0"; sha256="0l8y2zbhykzqs9hbjhj1cys1mzdjhmi4rjv4l3v0sv5969h6sl96"; depends=[AnnotationDbi org_Mm_eg_db]; };
-  mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.5.0"; sha256="175h9jaqjqhabxi3ydrmr8ykwyzw078frqj93p55b8gdwccbngzb"; depends=[AnnotationDbi org_Mm_eg_db]; };
+  mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.7.0"; sha256="1mkw3997mqr7ssa60zpwhlyajda51smcrnlnxwif78g99yj0nrxb"; depends=[AnnotationDbi org_Mm_eg_db]; };
-  mouse_db0 = derive2 { name="mouse.db0"; version="3.4.1"; sha256="1b03kqwpnwhnmv6x0cgn24qsl75hvcqmqpc1mlw8ms7hlbvaiijg"; depends=[AnnotationDbi]; };
+  mouse_db0 = derive2 { name="mouse.db0"; version="3.5.0"; sha256="1plw9bjk75qyn5lb2ybvwbq2hrq67fvx0mf2m4dhr88wlncfynl3"; depends=[AnnotationDbi]; };
   mouse4302_db = derive2 { name="mouse4302.db"; version="3.2.3"; sha256="1wdgqawqzkr39xwl32cap4ksr59p7r7i83g82h1ss4q3lm58gxpm"; depends=[AnnotationDbi org_Mm_eg_db]; };
   mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; };
   mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; };
@@ -609,8 +581,8 @@ in with self; {
   mouse430a2probe = derive2 { name="mouse430a2probe"; version="2.18.0"; sha256="1f7a6mvcpv57h7kfj1qzkcwh7mdl2w9z6ysmrgan9037rd0652sz"; depends=[AnnotationDbi]; };
   mouseCHRLOC = derive2 { name="mouseCHRLOC"; version="2.1.6"; sha256="0xylgnz43xmjnqdwv7pn034wfs61va21lvcpn9igdik2s42ykpp2"; depends=[]; };
   mpedbarray_db = derive2 { name="mpedbarray.db"; version="3.2.3"; sha256="04pwchivzb19awnnqr9an0nl49rgdva58ip1fkgbavp3vlirxv4i"; depends=[AnnotationDbi org_Mm_eg_db]; };
-  mta10probeset_db = derive2 { name="mta10probeset.db"; version="8.5.0"; sha256="0k7mpqbd02hyc77kiacxzrq661bc27hdfj04lsdg2szm9ij14c11"; depends=[AnnotationDbi org_Mm_eg_db]; };
+  mta10probeset_db = derive2 { name="mta10probeset.db"; version="8.7.0"; sha256="1bszj4wx7x8x4vdy1np755nx4m94hqwx43mg3ymbjb1hwfjv2cdr"; depends=[AnnotationDbi org_Mm_eg_db]; };
-  mta10transcriptcluster_db = derive2 { name="mta10transcriptcluster.db"; version="8.5.0"; sha256="1qbj0ac3xfbl0xw0xj4xix2spswgdp91qqqck8arlafpyacjc71b"; depends=[AnnotationDbi org_Mm_eg_db]; };
+  mta10transcriptcluster_db = derive2 { name="mta10transcriptcluster.db"; version="8.7.0"; sha256="1vsv943xwn7y1ghw4bcyyywl4m4y0gsckdxkfyd8lg36b2gq08q9"; depends=[AnnotationDbi org_Mm_eg_db]; };
   mu11ksuba_db = derive2 { name="mu11ksuba.db"; version="3.2.3"; sha256="188ld7awcgrbqxkwqyr98739x4ihmcawv3lv2ybrc0khqifylzj3"; depends=[AnnotationDbi org_Mm_eg_db]; };
   mu11ksubacdf = derive2 { name="mu11ksubacdf"; version="2.18.0"; sha256="09xm3ah3zlssclblx663rlwrnmx3niabd5nf7zf7krhbpgcwhyim"; depends=[AnnotationDbi]; };
   mu11ksubaprobe = derive2 { name="mu11ksubaprobe"; version="2.18.0"; sha256="1p3kc06h83ivh06a8qqcbpgbsbdfp9nnwvqfxr6d1gdn15qcp96k"; depends=[AnnotationDbi]; };
@@ -635,28 +607,25 @@ in with self; {
   nugomm1a520177cdf = derive2 { name="nugomm1a520177cdf"; version="3.4.0"; sha256="0skd5b76si0vydzk5qhg4f1a1j655alxflm9sqci8fi8safwj96a"; depends=[AnnotationDbi]; };
   nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; };
   oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; };
-  org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.4.0"; sha256="1rp0pipdfwwacfnznj65di2xny8ccjdfll882jp73yrpk8x6g9w5"; depends=[AnnotationDbi]; };
+  org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.5.0"; sha256="0dzd281yi2vikzr4civf38wy8gpsdr9k2ks9j6sa2rnsnpf1hnh9"; depends=[AnnotationDbi]; };
-  org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.4.0"; sha256="0176yrpjxdn83nvqlp24ad65fwqdfwk010lmygl0anjgnskxb3y2"; depends=[AnnotationDbi]; };
+  org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.5.0"; sha256="1vpzciar4lwq5r8faz1mh9y085i71q0gcxz5c2gn9469qbi5ymmp"; depends=[AnnotationDbi]; };
-  org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.4.0"; sha256="1cazky0p9rj8islivfhrmqal4q39h9hiq48mpmycpkh8qrrl7nyy"; depends=[AnnotationDbi]; };
+  org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.5.0"; sha256="1qcl4px85qhim5nndj4j1ajyvby8ldbr0g0pml2q54wnjs9f8a8f"; depends=[AnnotationDbi]; };
-  org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.4.0"; sha256="12llfzrrc09kj2wzbisdspv38qzkzgpsbn8kv7qkwg746k3pq436"; depends=[AnnotationDbi]; };
+  org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.5.0"; sha256="02ggchixlmzywhsbr0h2ms4dravv7m5964cjxqcjxqs16vjwlbk9"; depends=[AnnotationDbi]; };
-  org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.4.0"; sha256="07h339h4vh9dwb6jdr7hczcc1bka5gibi5g7b97jlpykn5qzqjrx"; depends=[AnnotationDbi]; };
+  org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.5.0"; sha256="0rdiffd9v6g6cwrd23jspj0bxyds9l977pv27azagw1f7bkdqgbk"; depends=[AnnotationDbi]; };
-  org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.4.0"; sha256="1vzbphbrh1cf7xi5cksia9xy9a9l42js2z2qsajvjxvddiphrb7j"; depends=[AnnotationDbi]; };
+  org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.5.0"; sha256="033qak1d3wwz17va0bh8z8p8arx0aw2va6gm1qfwsvdkj9cd9d7d"; depends=[AnnotationDbi]; };
-  org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.4.0"; sha256="0c1q78gbqgv915daalsgmm58xxqw4zsd3xf99m9kzfv7qd11c0nk"; depends=[AnnotationDbi]; };
+  org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.5.0"; sha256="0854rqanjzscvlq7rj6bvlxcfyhwiqwi4lnw7abzvv0zcwvf07i0"; depends=[AnnotationDbi]; };
-  org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.4.0"; sha256="14bv6gbznmdf3yhz2r4pqfbxc5ql7h2wv6n5alyir1fyy1gdyf0m"; depends=[AnnotationDbi]; };
+  org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.5.0"; sha256="0cydh8rj9r2g6wzs42sh6cf77fs0nrgww4jsy3x61aa0b8lngjxj"; depends=[AnnotationDbi]; };
-  org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.4.0"; sha256="1cgb7fg0c7z3f7x17b0ir8zzgvi4k1d64ryqy9mmfk9bg5n1f9y1"; depends=[AnnotationDbi]; };
+  org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.5.0"; sha256="00s7p7wrjd57wvwxyhb2m603kms2pm67rr3m83dp2s0pa4ffggmr"; depends=[AnnotationDbi]; };
-  org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.4.0"; sha256="0swfc1krsfgjhxgkhdnhq4x5ikviixk0pyacvl7f20gbyqlgxpsf"; depends=[AnnotationDbi]; };
+  org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.5.0"; sha256="1q5g9ka4fxjq5jp0mg6x8j44995y2r9hvs91qaan8xcmsa900q3q"; depends=[AnnotationDbi]; };
-  org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.4.0"; sha256="19mg64pw8zcvb9yxzzyf7caz1kvdrkfsj1hd84bzq7crrh8kc4y6"; depends=[AnnotationDbi]; };
+  org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.5.0"; sha256="1v6wa5613cjq59xd7x1qz8lr9nb2abm9abl2cci1khrnrlpla927"; depends=[AnnotationDbi]; };
-  org_Hs_ipi_db = derive2 { name="org.Hs.ipi.db"; version="1.3.0"; sha256="06nkcjcavzwgnxzmbj05i4dapszf2wq7m5s0g8d6hm7kxz5wxddy"; depends=[AnnotationDbi PAnnBuilder]; };
+  org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.5.0"; sha256="11q21p3ki4bn4hb3aix0g775l45l66jmas6m94nfhqqnpjhv4d6g"; depends=[AnnotationDbi]; };
-  org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.4.0"; sha256="1lykjqjaf01fmgg3cvfcvwd5xjq6zc5vbxnm5r4l32fzvl89q50c"; depends=[AnnotationDbi]; };
+  org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.5.0"; sha256="13ia5ipyif6cxj4gmw4jl0j84iwj4289k69qgfm6qsw4xdc8amln"; depends=[AnnotationDbi]; };
-  org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.4.0"; sha256="0ba5z4fvv69bsw62wcx4smsz9fdlk01sql7scgi799ij9qzzd13v"; depends=[AnnotationDbi]; };
+  org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.5.0"; sha256="08pldh0j1z9csbyzxn89xk9ir1av1dd4jbh79l04g4s34x13m8l8"; depends=[AnnotationDbi]; };
-  org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.4.0"; sha256="0miw8n5lqijfxw2q7lyxkp2srdf1rdfxyx8k87r279x23wxqgz12"; depends=[AnnotationDbi]; };
+  org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.5.0"; sha256="1sbimln1v575pxzsgx4sw5712nwfy8n188limrnhwg7brj893wrl"; depends=[AnnotationDbi]; };
-  org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.4.0"; sha256="1dqj2japcbdqkisdla6aca4cjf4hbigf4gb2gn8abx5n1di0h2pi"; depends=[AnnotationDbi]; };
+  org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.5.0"; sha256="11vnia08kblh3v4jypl6sw94p1n6702zskxj0gv4ijygaq61m5x4"; depends=[AnnotationDbi]; };
-  org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.4.0"; sha256="04az0yf3ngrz7nlbmmy9k97i9i8gf4dxbmgvd03vrv59y0x47m11"; depends=[AnnotationDbi]; };
+  org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.5.0"; sha256="1h3wa5g65hg9fdg722w520gb6c16zgccg62vxgd37gj9bdnywg5w"; depends=[AnnotationDbi]; };
-  org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.4.0"; sha256="01zc0kx0jrmcwly4bb3cy69x3zm7mkrffzx720mwphn61gzngz3z"; depends=[AnnotationDbi]; };
+  org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.5.0"; sha256="1wizm4dx6an2pfi322aykis41a6skhgv8yjyfl2pdi0kizlvw26c"; depends=[AnnotationDbi]; };
-  org_Sco_eg_db = derive2 { name="org.Sco.eg.db"; version="2.4.2"; sha256="1ppjl55059gk9jbh8c8xbsn2jlqz1hm650vm9gxnbd8hpnk63vgz"; depends=[AnnotationDbi]; };
+  org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.5.0"; sha256="1rhz86d0ly7z79pbaf7s8kw1sx9ys8bawfrcgs33km2dd2cgzzi0"; depends=[AnnotationDbi]; };
-  org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.4.0"; sha256="17j0lvwp212zaxw5dx8488884v6b7l4hhzn2d14wisf8s3w1djig"; depends=[AnnotationDbi]; };
-  org_Tgondii_eg_db = derive2 { name="org.Tgondii.eg.db"; version="1.0"; sha256="1vq3qbk6jswfffj5lfwsic71h8ga7a6gqf6wfa7qcda3gvfhnwlc"; depends=[AnnotationDbi]; };
-  org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.4.0"; sha256="1sbzmnxi9gvq3x86w6jw49qgzd7g58ilh1xmnvr840pz50b3n8j6"; depends=[AnnotationDbi]; };
   paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; };
   paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; };
   pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
@@ -830,10 +799,10 @@ in with self; {
   pd_zebrafish = derive2 { name="pd.zebrafish"; version="3.12.0"; sha256="0gg7y7w51pv0vf39qzyaf09wl3vxy222nr69zgxg7cylwxmaky7v"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
   pedbarrayv10_db = derive2 { name="pedbarrayv10.db"; version="3.2.3"; sha256="01sn7qh5r2c2ph7gqirlzlplxscsmczf7ajffd9rsx59932f71kx"; depends=[AnnotationDbi org_Hs_eg_db]; };
   pedbarrayv9_db = derive2 { name="pedbarrayv9.db"; version="3.2.3"; sha256="0x9m9m4nmdhc0j5244avmlfwljcpw0sh44l1b00cx05swi3vmjlp"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.4.0"; sha256="1xkrm9s3x301g8kf0p60dcgx3irmsl8jfaayxbw3zgfyyr0nb1mw"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
+  phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.6.0"; sha256="09gnsrv37pzpbyx98vjcsi1kavazz4hkf7r48dggdad9lqg0fqnm"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
-  phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.4.0"; sha256="0d99mmih14s7mw0qsp2izdhi6fc59aamz160p0p9jpfbd8v4fz0g"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
+  phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.6.0"; sha256="1g0yd623sb73h3nf1mszchiyw5mk4dlz2h7mqix9d8xdsqmrc81l"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
-  phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.4.0"; sha256="0r0wb1yj0ahkhql45n4jcqc2jgac5nshrjk3vn0w8sn80mxzialj"; depends=[BSgenome GenomicRanges IRanges VariantFiltering]; };
+  phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.6.0"; sha256="1p2kx6zrgc9yzkvmizzrlhhc75mnxpjgslpxm3kcmvsg12qd4zmz"; depends=[BSgenome GenomicRanges GenomicScores IRanges S4Vectors]; };
-  pig_db0 = derive2 { name="pig.db0"; version="3.4.1"; sha256="1rkkbxk33nj8n2cijsh109xa49dw3b8hj05h396z0g6k2rflkxhx"; depends=[AnnotationDbi]; };
+  pig_db0 = derive2 { name="pig.db0"; version="3.5.0"; sha256="0xga9i0bicxbbc9rypwjw376qqg401smwwqjgkdgf4i5lrds0xi7"; depends=[AnnotationDbi]; };
   plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; };
   plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; };
   poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; };
@@ -850,26 +819,26 @@ in with self; {
   rae230b_db = derive2 { name="rae230b.db"; version="3.2.3"; sha256="0rjs9lijabhxfrs6m9qri7a1c10zm1mxqx7bbip366cw069f5dx4"; depends=[AnnotationDbi org_Rn_eg_db]; };
   rae230bcdf = derive2 { name="rae230bcdf"; version="2.18.0"; sha256="1j2i49cp042nk3rkf8q6gxcnwd5cihz1nyg8r6yndkja51r41pi8"; depends=[AnnotationDbi]; };
   rae230bprobe = derive2 { name="rae230bprobe"; version="2.18.0"; sha256="1smqs93fks4rd5g9kk7cacnpsnj4rjr0d6fl2i01mdiihfi3csny"; depends=[AnnotationDbi]; };
-  raex10stprobeset_db = derive2 { name="raex10stprobeset.db"; version="8.5.0"; sha256="15i8inp73n8acjrs6z0hk88lgzjrcqd9vr5cv4vnsdzmzbnhrxdd"; depends=[AnnotationDbi org_Rn_eg_db]; };
+  raex10stprobeset_db = derive2 { name="raex10stprobeset.db"; version="8.7.0"; sha256="1i5f6ygg3jq6msqacd1npnvcb3pp5a1c95na7rdd3818h27pj4vf"; depends=[AnnotationDbi org_Rn_eg_db]; };
-  raex10sttranscriptcluster_db = derive2 { name="raex10sttranscriptcluster.db"; version="8.5.0"; sha256="1r0rg2ifiswbf5a2zahm9823vnahii9s2vrhprbj87rbl7wm19xl"; depends=[AnnotationDbi org_Rn_eg_db]; };
+  raex10sttranscriptcluster_db = derive2 { name="raex10sttranscriptcluster.db"; version="8.7.0"; sha256="18y7fkpg34d18xczc5xz5hcigfkd4fxzlhd1cvfadxjhjyaj5fhk"; depends=[AnnotationDbi org_Rn_eg_db]; };
-  ragene10stprobeset_db = derive2 { name="ragene10stprobeset.db"; version="8.5.0"; sha256="0zywhbxajqcmfl90r95r2ghas4zrla92rjc5qa7vf57cas40pk1s"; depends=[AnnotationDbi org_Rn_eg_db]; };
+  ragene10stprobeset_db = derive2 { name="ragene10stprobeset.db"; version="8.7.0"; sha256="0ignrscm098xpnrp60lhnakgh4rwypzk6a5nh7miacxbs2mcy1lr"; depends=[AnnotationDbi org_Rn_eg_db]; };
-  ragene10sttranscriptcluster_db = derive2 { name="ragene10sttranscriptcluster.db"; version="8.5.0"; sha256="1wiichdhfi20lav0vqi80jw0k8i6pbsrdlark8x397sn1acynn3q"; depends=[AnnotationDbi org_Rn_eg_db]; };
+  ragene10sttranscriptcluster_db = derive2 { name="ragene10sttranscriptcluster.db"; version="8.7.0"; sha256="12w77ajis8ll25knmjm8cvnxjlgpj6n7j66lmww21y7dvg33gwlr"; depends=[AnnotationDbi org_Rn_eg_db]; };
   ragene10stv1cdf = derive2 { name="ragene10stv1cdf"; version="2.18.0"; sha256="0fm2yj6nn3v1wiscjb53hm4ylh5cgxvs7qgc9sbsbpv7agr0bzng"; depends=[AnnotationDbi]; };
   ragene10stv1probe = derive2 { name="ragene10stv1probe"; version="2.18.0"; sha256="0cb3a908hixcakl41ay4yyfm9r97ln8gjidn4rs1hr7qaplfj1mh"; depends=[AnnotationDbi]; };
-  ragene11stprobeset_db = derive2 { name="ragene11stprobeset.db"; version="8.5.0"; sha256="1qsrj2r0j4819rx2m6ahxz8fhpwz5cv6srysl585igipjy1caq43"; depends=[AnnotationDbi org_Rn_eg_db]; };
+  ragene11stprobeset_db = derive2 { name="ragene11stprobeset.db"; version="8.7.0"; sha256="0cc6cch0r2dlk689gsphcsf5ikbgyczslmq7r20q1cvgqxbzj6kp"; depends=[AnnotationDbi org_Rn_eg_db]; };
-  ragene11sttranscriptcluster_db = derive2 { name="ragene11sttranscriptcluster.db"; version="8.5.0"; sha256="17np61fr5n545ilr4xlwsc559ni7rc38ns67x41lj6gnaz8cpmiy"; depends=[AnnotationDbi org_Rn_eg_db]; };
+  ragene11sttranscriptcluster_db = derive2 { name="ragene11sttranscriptcluster.db"; version="8.7.0"; sha256="195dx0splkvdwqn4h6nvmm3zd0sv3vhcjz1bp1qxgi6d5iakvkry"; depends=[AnnotationDbi org_Rn_eg_db]; };
-  ragene20stprobeset_db = derive2 { name="ragene20stprobeset.db"; version="8.5.0"; sha256="08g7wnfmxai9klscb7yywj6p8yfnid8px3qqwkn2s2r1iwi46azg"; depends=[AnnotationDbi org_Rn_eg_db]; };
+  ragene20stprobeset_db = derive2 { name="ragene20stprobeset.db"; version="8.7.0"; sha256="1p8qiqwxpkq2784ixzdd9pq38nrb4x8qwfmk5alr225br4vv0k2q"; depends=[AnnotationDbi org_Rn_eg_db]; };
-  ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.5.0"; sha256="09qcsbhl81j4wiz90fw6ldy97x821w72wywqik6rrsw1qhyaizkg"; depends=[AnnotationDbi org_Rn_eg_db]; };
+  ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.7.0"; sha256="135cgn92raa6f9yiw4k25rn04rpg5mdnf969l66x4s1jcc0rwscq"; depends=[AnnotationDbi org_Rn_eg_db]; };
-  ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.5.0"; sha256="15920i2wdyn5j0gn8nxdv1dvwhkmh1swzkazj5zqrg304xhrv1ki"; depends=[AnnotationDbi org_Rn_eg_db]; };
+  ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.7.0"; sha256="0lp4prymrm3cp8yq1hba9bylw22hcvlx7piqpvjx51hj79yrwdig"; depends=[AnnotationDbi org_Rn_eg_db]; };
-  ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.5.0"; sha256="08gzlnbng7vhc3kw72lvrzp8f6799vr8b4c4vkdzwsrhd4hs60hf"; depends=[AnnotationDbi org_Rn_eg_db]; };
+  ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.7.0"; sha256="1b7s2r4w1yy2v3srs6n931zc64qf58nq4apmq2ag5nx50wspima1"; depends=[AnnotationDbi org_Rn_eg_db]; };
-  rat_db0 = derive2 { name="rat.db0"; version="3.4.1"; sha256="0zzf91wbincgp75mwjx6q13xayb46giqv8vrz1wx8pmw2halqiy4"; depends=[AnnotationDbi]; };
+  rat_db0 = derive2 { name="rat.db0"; version="3.5.0"; sha256="09kbsaksmas6avcdlvbg6kvdw6cf156i7qip9l0mhv6qyqhl0p36"; depends=[AnnotationDbi]; };
   rat2302_db = derive2 { name="rat2302.db"; version="3.2.3"; sha256="0vj4vkx091m34xqjh6gv6m2iqszvn5rq3kvnpyq3fin5v42wrsr1"; depends=[AnnotationDbi org_Rn_eg_db]; };
   rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; };
   rat2302probe = derive2 { name="rat2302probe"; version="2.18.0"; sha256="1zwjgbcb9d4ib6z1iyjz8x11lq0b5gqs08y6j3idb5wf3i2p521v"; depends=[AnnotationDbi]; };
   ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; };
   rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; };
   rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; };
-  reactome_db = derive2 { name="reactome.db"; version="1.58.0"; sha256="191bz92rr446g8w4m4wr9c51ykfqaj65vp7adb56wch7r8llawrl"; depends=[AnnotationDbi]; };
+  reactome_db = derive2 { name="reactome.db"; version="1.62.0"; sha256="097na9ms80lxpc4qaagaqlxs7kjsjpkq649f2jqbav0mkph52bdh"; depends=[AnnotationDbi]; };
   rgu34a_db = derive2 { name="rgu34a.db"; version="3.2.3"; sha256="1s2sd5bqlj4qhamhrnb9byxn8nc7z265mqy7zzkgxcd6a2k472vp"; depends=[AnnotationDbi org_Rn_eg_db]; };
   rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; };
   rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; };
@@ -883,7 +852,7 @@ in with self; {
   rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; };
   rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; };
   rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; };
-  rhesus_db0 = derive2 { name="rhesus.db0"; version="3.4.1"; sha256="16p3zsx6sr466xzf0yd667an21br21n13agacsysf9g1vw4gc7cx"; depends=[AnnotationDbi]; };
+  rhesus_db0 = derive2 { name="rhesus.db0"; version="3.5.0"; sha256="09i0f2ddss092awdmhshnndniyy3pzfj56nfbkgrj0y22lgfw875"; depends=[AnnotationDbi]; };
   rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; };
   rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; };
   ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; };
@@ -892,8 +861,8 @@ in with self; {
   rnu34_db = derive2 { name="rnu34.db"; version="3.2.3"; sha256="0ahridq75rmjyaivmlhn428wg712zv3003cbzzrajm9w6nibbfgk"; depends=[AnnotationDbi org_Rn_eg_db]; };
   rnu34cdf = derive2 { name="rnu34cdf"; version="2.18.0"; sha256="1snb89530zxdbsfs1vgw30b1wdc5sdr1q46bmvz5m9g57gyficr0"; depends=[AnnotationDbi]; };
   rnu34probe = derive2 { name="rnu34probe"; version="2.18.0"; sha256="1rzjha1v453fxiwqs2zgwcbrvz6w96biz2jny0hrh5s86d5f6xpb"; depends=[AnnotationDbi]; };
-  rta10probeset_db = derive2 { name="rta10probeset.db"; version="8.5.0"; sha256="039klpv3v3npb9i9pw4sjh2jwyv8ffk83360h41lxmmy17fdzlmh"; depends=[AnnotationDbi org_Rn_eg_db]; };
+  rta10probeset_db = derive2 { name="rta10probeset.db"; version="8.7.0"; sha256="02hcq8zflfixiqwsjr7bsllcqh3hh910n00hzlqry07mwwxbv356"; depends=[AnnotationDbi org_Rn_eg_db]; };
-  rta10transcriptcluster_db = derive2 { name="rta10transcriptcluster.db"; version="8.5.0"; sha256="0q0szasa6c1klhhzdp08sv598m7njf1xql9h710xajbyksq0accy"; depends=[AnnotationDbi org_Rn_eg_db]; };
+  rta10transcriptcluster_db = derive2 { name="rta10transcriptcluster.db"; version="8.7.0"; sha256="1al9npm4skccr7369gpg0hxsw3nmngsl6z06c27n3ymdavsd2dyj"; depends=[AnnotationDbi org_Rn_eg_db]; };
   rtu34_db = derive2 { name="rtu34.db"; version="3.2.3"; sha256="119l36gbzdi52na2lkjbpb5r2d9pp5rz2zpzfj7isw07an6h8wmh"; depends=[AnnotationDbi org_Rn_eg_db]; };
   rtu34cdf = derive2 { name="rtu34cdf"; version="2.18.0"; sha256="10f5wnvk820c8brl2qqs7mv6jcn1v6pmz680kvlpyz9s2sz16936"; depends=[AnnotationDbi]; };
   rtu34probe = derive2 { name="rtu34probe"; version="2.18.0"; sha256="0mcp9lmc65j3ds73gyak72pkshnx6km0d2cm324yaxlp9bqzfchw"; depends=[AnnotationDbi]; };
@@ -920,8 +889,8 @@ in with self; {
   vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; };
   wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; };
   wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; };
-  worm_db0 = derive2 { name="worm.db0"; version="3.4.1"; sha256="0r76ck6b2zkf38z59n9m3frc2d6v27frrbryvyk6lv4bnnwa1p2n"; depends=[AnnotationDbi]; };
+  worm_db0 = derive2 { name="worm.db0"; version="3.5.0"; sha256="05r29cqswz3ph3adymdigayv5ci19cd02y26kjbgwrh38xha5cg0"; depends=[AnnotationDbi]; };
-  xenopus_db0 = derive2 { name="xenopus.db0"; version="3.4.1"; sha256="0953cf597hxd2h28p7bqrv5xxs96y3bxr4x1hp8bm1v0l8l37d13"; depends=[AnnotationDbi]; };
+  xenopus_db0 = derive2 { name="xenopus.db0"; version="3.5.0"; sha256="136yrk7qlbzy717xy1abpn5l42j0qzal72y0p20wwxw60xhpx1rv"; depends=[AnnotationDbi]; };
   xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; };
   xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; };
   xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; };
@@ -933,7 +902,7 @@ in with self; {
   ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; };
   ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; };
   ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; };
-  yeast_db0 = derive2 { name="yeast.db0"; version="3.4.1"; sha256="0d9p474891jshxynmwa63xg7kb01s6vb1dll3hns9ps0bpm6d8r3"; depends=[AnnotationDbi]; };
+  yeast_db0 = derive2 { name="yeast.db0"; version="3.5.0"; sha256="00rp099g5302hy4g4h6j11nslc2j6p58ax80mnswhzvfr37sb99f"; depends=[AnnotationDbi]; };
   yeast2_db = derive2 { name="yeast2.db"; version="3.2.3"; sha256="1xns0129ifklipbardybkjyxfwnlklavq0k6s15wk2iwk7vxa33s"; depends=[AnnotationDbi org_Sc_sgd_db]; };
   yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; };
   yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; };
@@ -942,7 +911,7 @@ in with self; {
   ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; };
   ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; };
   zebrafish_db = derive2 { name="zebrafish.db"; version="3.2.3"; sha256="1n6p04hlm5c32fnficx294s7n7izy5460avagw8hx1g5xryhdzqk"; depends=[AnnotationDbi org_Dr_eg_db]; };
-  zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.4.1"; sha256="12a1qk7wjjsclrj2nbf02hwk9pakzkgzgy4l2893bnwyf0c30ffb"; depends=[AnnotationDbi]; };
+  zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.5.0"; sha256="1mkyhf1vz0n98zs941v5f7nl0cg0s873ny3m6vdpj5c9nyqc8hxs"; depends=[AnnotationDbi]; };
   zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; };
   zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; };
 }

pkgs/development/r-modules/bioc-experiment-packages.nix

@@ -4,314 +4,332 @@
 # Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix
 
 { self, derive }:
-let derive2 = derive { rVersion = "3.4"; };
+let derive2 = derive { biocVersion = "3.6"; };
 in with self; {
-  ABAData = derive2 { name="ABAData"; version="1.4.0"; sha256="1xlr9ps6s6xy95wh4c0m09rl2hkp9rms2gbfgsf0y46j1jak4ick"; depends=[]; };
+  ABAData = derive2 { name="ABAData"; version="1.8.0"; sha256="035h4yrna11d2g3iqnn52sv07ydgpa2my4bwcs4a9di0pf9rbm06"; depends=[]; };
-  ALL = derive2 { name="ALL"; version="1.16.0"; sha256="01b0ksakw06l8q9a1ihb56sm0p8v78d2n4aji8yj1nnfi2kcgr3m"; depends=[Biobase]; };
+  ALL = derive2 { name="ALL"; version="1.20.0"; sha256="1kz3k99dxam9zqpf1hg4z049f7dliyw3kg9cms1sma2yl5l7nj2y"; depends=[Biobase]; };
-  ALLMLL = derive2 { name="ALLMLL"; version="1.14.0"; sha256="1hza3ckxlc9k6mrdxc94r8yrsnj51ywcpinslrfyhanibrjvi8yc"; depends=[affy]; };
+  ALLMLL = derive2 { name="ALLMLL"; version="1.18.0"; sha256="051hhfrz4fx28hbi7fycqqbnij9lxh6spj2xqj37nmqc8wx2qfs1"; depends=[affy]; };
-  ARRmData = derive2 { name="ARRmData"; version="1.10.0"; sha256="0f5my7jbp0x8r7hcj5rvnfa3swxh39apfby7rlqmkznr175jmsa8"; depends=[]; };
+  ARRmData = derive2 { name="ARRmData"; version="1.14.0"; sha256="0pxwvghyvd3c717lqixkadh79jrv0r0dl80ds688gxgw2pfcwr6y"; depends=[]; };
-  Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.10.0"; sha256="038yspp7l837i8lqv99alj1jsb51b27c84m4nvglpy3pzwvbqda7"; depends=[]; };
+  Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.14.0"; sha256="1ynwl9rfc0hdacvdmfdm97ya14jqf8q8w93m2vd58nh62p1jmprp"; depends=[]; };
-  Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.8.0"; sha256="070iv3jschvz36fa6q8d4s6prlbmwj4m07f69yhfv4mlb30nz6gk"; depends=[]; };
+  Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.12.0"; sha256="0bbslhfipz0s5ill8p8wfr47ikx2lg1vi9h71rn0wx1v76q5sgpf"; depends=[]; };
-  Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.12.0"; sha256="1z6bn6sqdqd152gn2bzppy6g57n281mwmp5vvv901mb3w1i3yvgl"; depends=[]; };
+  Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.16.0"; sha256="06q8ixh2zwk4143ppnrdcvgaagzy33swsrlp8l3lqp943fnn2hil"; depends=[]; };
-  AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.12.0"; sha256="0dqbf9rvha6cq0ipf9rjwx6akmcapsrh1k2p5kws3i0i2nw2kr3v"; depends=[]; };
+  AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.16.0"; sha256="1nqdxp33xl2lwcf5lq1v1k2qnid5pf7wxbxldmr0rl6jxlm1r5va"; depends=[]; };
-  Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.12.0"; sha256="1yx8pri6zdvv4hr4w43axb10d1y2bmqfp5mhhn9j286wxal7qgh0"; depends=[]; };
+  Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.16.0"; sha256="1j4czciqiaj2fqf7v5yd41ln31gl6sqs6s07i9pwyclhw66f3y56"; depends=[]; };
-  AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.14.0"; sha256="0prmpqyklxl47wna3kdh27bnrw9saa0s48xidmybs1nzgvizs5s4"; depends=[affy]; };
+  AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.18.0"; sha256="0bc2cdqvqdalq5hqhnnzayh2klnzqaw6micgsk35mai0lak34rpd"; depends=[affy]; };
-  AneuFinderData = derive2 { name="AneuFinderData"; version="1.2.0"; sha256="1bcr57mpvvxlryrhcpwzagv9gdirhfdmyc4rsv6giixqsj2d2m9v"; depends=[]; };
+  AneuFinderData = derive2 { name="AneuFinderData"; version="1.6.0"; sha256="0cbgmfciy9v81jfn60mw98csxxdmm3hfqdwyaigbagj949alnbcm"; depends=[]; };
-  AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.4.0"; sha256="0hc5zqdajra3qy76z65qccllksz268vpnrn35232zp6w3i1zljx6"; depends=[]; };
+  AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.8.0"; sha256="1z7kcl25hpl7r7pshz14cm5j635qj451df1pfd9giygn7y9kpf93"; depends=[]; };
-  BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.12.0"; sha256="1dvy6bg0949cx12smpzkndh1mq32jy0hfq7aaiixziqbxb32gggm"; depends=[beadarray GEOquery limma]; };
+  BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.16.0"; sha256="1yslwgw504xbplq16xnf610rs994p23xm9qcyaa9f0lzhqgkksap"; depends=[beadarray GEOquery limma]; };
-  CCl4 = derive2 { name="CCl4"; version="1.12.0"; sha256="19f1zmicl6i90l11sq6ly9913v2913s37c5jz5341p822shf8knz"; depends=[Biobase limma]; };
+  CCl4 = derive2 { name="CCl4"; version="1.16.0"; sha256="0w1mxf7w1yk7kjqam7xdb11aj16pddk9wyfd1ps0nqagzvjsn1qv"; depends=[Biobase limma]; };
-  CLL = derive2 { name="CLL"; version="1.14.0"; sha256="078avwbs42nnaqxa1k4769rgxign1xmwv2s1irjgd9dkxqq2ha0n"; depends=[affy Biobase]; };
+  CLL = derive2 { name="CLL"; version="1.18.0"; sha256="1zhkf75bhx8z0s4wpjyc0xdv9aifng25gpb8fkvncpd8lmmdg6gd"; depends=[affy Biobase]; };
-  COHCAPanno = derive2 { name="COHCAPanno"; version="1.10.0"; sha256="1jf4wrbwbzbn4rwjkn936zg1cddd1s96a8m8r9bx2z2zm49vc5bp"; depends=[]; };
+  COHCAPanno = derive2 { name="COHCAPanno"; version="1.14.0"; sha256="082cwdyzq3h1sl39pn2c3ix5cp6mjczbvvdh6gii54181qkg8r2h"; depends=[]; };
-  CONFESSdata = derive2 { name="CONFESSdata"; version="1.2.0"; sha256="0p8v2qxg2hj1q3r8pwpp46zfbwjyiilq85kmzxl8v2flcw9n3brv"; depends=[]; };
+  CONFESSdata = derive2 { name="CONFESSdata"; version="1.6.0"; sha256="1ln3s3zk4yi7qjjqnvxg12x7qlnz77k29nbjv5zbpdxdjyisnq4g"; depends=[]; };
-  COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.10.0"; sha256="1yd8k5pacs37yvb1bbpb46h9s3h1r8kb01r1hiwr73m1rbsg3qdl"; depends=[]; };
+  COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.14.0"; sha256="1qi0l4rf62gzqg14zalcrisklfgbzahhzahyyd5q898r57xgif7b"; depends=[]; };
-  COSMIC_67 = derive2 { name="COSMIC.67"; version="1.10.0"; sha256="0mw0q9s2dsqvc5qb5p57624raki7dgs0qc1anr2vaw1pi1gvfgib"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; };
+  COSMIC_67 = derive2 { name="COSMIC.67"; version="1.14.0"; sha256="11ir7v1xlxwjxjj1dz3i7j1fmq9xnhd3qc7cxippr0w4867cw8pc"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; };
-  CRCL18 = derive2 { name="CRCL18"; version="0.108.0"; sha256="12m13kv1f1cxynlar59m5s0ihz92ff52j80dqz5m8dzsynbjckbz"; depends=[Biobase]; };
+  CRCL18 = derive2 { name="CRCL18"; version="0.112.0"; sha256="1c6lvzjddm2sxxjz452nmaadhvaz684i3gyvmlibhqaxc9vr09mx"; depends=[Biobase]; };
-  CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.6.0"; sha256="0zjc5h348h94h2vm926z592f1zibv000nvx039662ydhsxn58mp2"; depends=[Cardinal]; };
+  CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.10.0"; sha256="0jlikfjgmjiizm28srbws7sq1b7h45gb22m4q19il13rdpn6rfls"; depends=[Cardinal]; };
-  CellMapperData = derive2 { name="CellMapperData"; version="1.0.0"; sha256="12nkc500mqzfrg5yksfwf4f4kv2flk4l7lxx6ws0kw2hgrnm9yz1"; depends=[CellMapper ExperimentHub]; };
+  CellMapperData = derive2 { name="CellMapperData"; version="1.4.0"; sha256="064hbkwxfl2sb4vvvmm44skd34g87vgw6nv0ml8vyhba5mmszf84"; depends=[CellMapper ExperimentHub]; };
-  ChAMPdata = derive2 { name="ChAMPdata"; version="2.6.0"; sha256="1hkwwkz2k4dnsl2sshr33as16x0dh98xvsnpf0zll2vkjkjw44v4"; depends=[BiocGenerics GenomicRanges]; };
+  ChAMPdata = derive2 { name="ChAMPdata"; version="2.10.0"; sha256="0cjwyapqv4d6mncg4jy1x5qfz7sim9vqv6m007d0n05ly02qn4vd"; depends=[BiocGenerics GenomicRanges]; };
-  ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.12.0"; sha256="1hb4ay5a9z2c5zmjhlbbkcbycvmk27qimrpb6rvxkh3lprap2lv2"; depends=[bigmemory]; };
+  ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.16.0"; sha256="0bj7j6qzqq6zy87r1sxdnlfqvl5r6rwjm5pd09jf9b27r6bf1r44"; depends=[bigmemory]; };
-  ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.12.0"; sha256="0wg9bsb1264wif23rqv2c863rr72crxb4n640q37ayf5zw7p6jgh"; depends=[affy hexbin limma qvalue statmod]; };
+  ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.2.0"; sha256="1f1dwqylch21kch88y96h41ma949y1xvfhj5ldqkn4fidb2f90kp"; depends=[]; };
-  ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.10.0"; sha256="0v34kfkdpw8zmg1hkxbdjvk58m18ldxvsirz7s3i2vaf8k1g4r53"; depends=[]; };
+  ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.16.0"; sha256="1ppybav3ag2x75i1w58prnxvrmjp754ywwgm38kfw3vs55l0ijv4"; depends=[affy hexbin limma qvalue statmod]; };
-  CopyNumber450kData = derive2 { name="CopyNumber450kData"; version="1.10.0"; sha256="1rblm57ljkq1dmzsbcmwm6p9gp0mgpgm2bbjczy0dppbhhr34m2c"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
+  ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.14.0"; sha256="02xffm790lchv78qwxgi0rfmk496hdc2970mm1maa7agy9wk56f8"; depends=[]; };
-  CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.6.0"; sha256="0x7cyynjmxls9as2gg0iyp9x5fpalxmdjq914ss7i84i9zyk5bhq"; depends=[]; };
+  CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.10.0"; sha256="1gbvk32kcax4w143ry8w376gfglqm128sas0pnim4nc1ikd7b7j7"; depends=[]; };
-  DAPARdata = derive2 { name="DAPARdata"; version="1.2.0"; sha256="1pc26xa2hx6vsl0xpfwhrgvnnrbxgr5cnzpygayrzh3hs4ryi987"; depends=[knitr MSnbase]; };
+  DAPARdata = derive2 { name="DAPARdata"; version="1.8.0"; sha256="0rkf6gwcvccci7hal5cxb04b7g8cx46ivvzplgfn5sn4idzj187f"; depends=[knitr MSnbase]; };
-  DLBCL = derive2 { name="DLBCL"; version="1.14.0"; sha256="0baxgyvy07k502ndf81p2v51wrlb1p9fy0zxlx6faf0g80kghx7l"; depends=[Biobase]; };
+  DLBCL = derive2 { name="DLBCL"; version="1.18.0"; sha256="19bxaapggfx148qvi1jp82026psiv669iga370bqva4dhawgmc8a"; depends=[Biobase]; };
-  DMRcatedata = derive2 { name="DMRcatedata"; version="1.10.1"; sha256="10z534ffv975x08hxdfv871lm1ngg9qmgakfhamqcdlbc02y1j93"; depends=[GenomicRanges]; };
+  DMRcatedata = derive2 { name="DMRcatedata"; version="1.14.0"; sha256="1i1cf4avmq6rrcvskj17gmplfa647fvmml86wkr8skhsj03z5s63"; depends=[GenomicRanges]; };
-  DREAM4 = derive2 { name="DREAM4"; version="1.10.0"; sha256="0swyywaja7cfvn370wx6cbh5pda724v3rd5iy4rhvm7i1pg3m4l7"; depends=[SummarizedExperiment]; };
+  DREAM4 = derive2 { name="DREAM4"; version="1.14.0"; sha256="1z1cddkk8jspnm3h1d4fdc6v14sqflzryqzvvzd0z3fp4lr46vkb"; depends=[SummarizedExperiment]; };
-  DeSousa2013 = derive2 { name="DeSousa2013"; version="1.10.0"; sha256="0hx68nzhjb7sqrc2zzn37n0aby388bvbxr6ads7k9rckz50lha19"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; };
+  DeSousa2013 = derive2 { name="DeSousa2013"; version="1.14.0"; sha256="0jwddzfqfiimcfmz9jwari493dppyxnyf0fp2k2s1bp98d50bnfb"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; };
-  DmelSGI = derive2 { name="DmelSGI"; version="1.6.0"; sha256="0n3ald8rg5yp5a27bwdfhdrl0rns50bmn7yi3z38qcvk6iiq9v70"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; };
+  DmelSGI = derive2 { name="DmelSGI"; version="1.10.0"; sha256="066davl2ga9pjl12zcgchmsprx3hz6zsb2zpnrpbijd0yqv8fjih"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; };
-  DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.12.0"; sha256="0944p9gk4vazb2gqn5s2mij0b2vyvgs050h61d1g2iv11156wc6v"; depends=[EBImage]; };
+  DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.16.0"; sha256="1za9anbfb36c1js2qhgqgxsjmkxfhkzyfyizzvqn1v31r101hsq7"; depends=[EBImage]; };
-  DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.10.0"; sha256="0vvzvxkvg6l0q143jjh74mx4xam3q4xc9wlxbl693aipz0kpicql"; depends=[]; };
+  DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.14.0"; sha256="0315kbc8fsn95325jlr2b83094f4mnk4pc5sihw0n0637nfpy7ks"; depends=[]; };
-  DvDdata = derive2 { name="DvDdata"; version="1.10.0"; sha256="0rz5yhfcammg17rx15dnkcg43cwqbwi8ipkkqmlfkr3kb4km731v"; depends=[]; };
+  DvDdata = derive2 { name="DvDdata"; version="1.14.0"; sha256="0chiajirlaf8b28nhr315429hp2x7mfff7fkax9kqrfz308xbcv1"; depends=[]; };
-  EGSEAdata = derive2 { name="EGSEAdata"; version="1.2.0"; sha256="1rm3yjsngjrn86l2rdx0cz1kz9ki8h16znhag854l9yfahh9sr35"; depends=[]; };
+  EGSEAdata = derive2 { name="EGSEAdata"; version="1.6.0"; sha256="1fvfs8bnf41fz2skahj4gxczqkgspnga84rlsrgd0shhrkmns9hx"; depends=[]; };
-  ELMER_data = derive2 { name="ELMER.data"; version="1.4.0"; sha256="0l12m881b5j0i7dw2wz868p0mqlfgfz3y5yyhj6kyzvwaj677p0a"; depends=[GenomicRanges]; };
+  ELMER_data = derive2 { name="ELMER.data"; version="2.2.2"; sha256="1w1zs37bsj1c6ywvdbjqilg5wndnmysb0w6sbaashd39z6w9iwpa"; depends=[GenomicRanges]; };
-  EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.12.0"; sha256="16q9f1p21xdh00mzb3vc2zpmyry9cfb884y2vp60gpq930vs3fsj"; depends=[GenomicRanges rtracklayer ShortRead]; };
+  EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.16.0"; sha256="19id2z2mzjjnxa956ppjhjq1a4gk916cd7k9cqs39lsbxvknp7nr"; depends=[GenomicRanges rtracklayer ShortRead]; };
-  FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.10.0"; sha256="0k0wajjj340wpc3zlcd9kylllfa3ly5cbfg8i38dc5g88hz5nvkr"; depends=[]; };
+  FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.14.0"; sha256="1bkgj1czb6ap7xx53bzwrd4azbfkpxcznmdvl4q7jgd34l1ms78a"; depends=[]; };
-  FIs = derive2 { name="FIs"; version="1.2.0"; sha256="0hw83rnb5bl4a390h2x413zlss52bkbmfyq0md69zx1rlvxpdprp"; depends=[]; };
+  FIs = derive2 { name="FIs"; version="1.6.0"; sha256="1b6cvzljgcpq9vzs92yjnnxm741ypjw13c9lnzh3qjv73nfgp5l9"; depends=[]; };
-  Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.10.0"; sha256="14ph3ll6xli84bpg9s43hmigwbnyprzfgmr4yifw77ssqkj0r3wx"; depends=[Biobase gplots limma VennDiagram]; };
+  Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.14.0"; sha256="1c0zdhk81g30v7yq6xvhanmb550xdaann6f4sskbvy5fa6kb04gz"; depends=[Biobase gplots limma VennDiagram]; };
-  Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.10.0"; sha256="1wilz0mwizar8491wkym5x3xwxfxmyd9r1djh3xnc9gnq88df0dy"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; };
+  Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.14.0"; sha256="081ki0yjdqngsdibpjnjs8lk10wfvgr9i5i99c837hl9wgfwd9v4"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; };
-  FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.12.0"; sha256="0q06szq9vs46frgax6896wkrxw5rb89854vnib68kaxkmyqrs4rp"; depends=[minfi]; };
+  FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.16.0"; sha256="09sb67dnv97ijljayiny3p45ddd2c01pd8pjj15sjjk8717lf65v"; depends=[minfi]; };
-  FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.2.0"; sha256="1d4caj4zrjlwkpbiclqxjyzzz3vg97p61hkmrxa18hbq8v9c67z1"; depends=[minfi]; };
+  FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.6.0"; sha256="16wvbfym2mz9ypmym2j3j5f36vdj100anc5hpwvpzh9ing62b00r"; depends=[minfi]; };
-  FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.0.0"; sha256="0z966py4bgxnifly56mlyqvi5v4mh1ay5nhfb7fd9qciq42jclzf"; depends=[minfi]; };
+  FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.4.0"; sha256="06f2zmkqzkrhwdx58pxzcvkqbckzg9k6qjlngbmgnnb9mi0hx8l3"; depends=[minfi]; };
-  FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.10.0"; sha256="1dgaylgx19cbvvcrdr3wwr9rp3jdx89mlxzc4fivnzllmf1dyyqa"; depends=[minfi]; };
+  FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.14.0"; sha256="19h4xvlsl61bpkdqqfrqw4iz9v0pnfxp1q8z9nn9m9wqf9cc3rkc"; depends=[minfi]; };
-  FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.10.0"; sha256="0r0iv8hp25ld9vpyij9lrk0xphaxcz4j4panyc83i18d6s9jw51s"; depends=[IRanges rtracklayer]; };
+  FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.14.0"; sha256="0zsffyhd9nxsg3a34sd2mycbvs8dsw96pqn1jj7zw5whldjihjwh"; depends=[IRanges rtracklayer]; };
-  GGdata = derive2 { name="GGdata"; version="1.12.0"; sha256="0h564577s3aklgg2a34026nacfzq3mpfmwmsl19dcmk7all5i100"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; };
+  GGdata = derive2 { name="GGdata"; version="1.16.0"; sha256="0s5wh3nxynxx4skgyxvbm4l7lk6rphcgwh71nr24a0a4jid0jisp"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; };
-  GSBenchMark = derive2 { name="GSBenchMark"; version="0.108.0"; sha256="13lc52xdv0mk4mr54i33k8rwb19496f8g8dj7xhh9vvx3dkcrl5k"; depends=[]; };
+  GSBenchMark = derive2 { name="GSBenchMark"; version="0.112.0"; sha256="10f5g78mqlzm3ygix8h08134k41c7k9l3j39q656jpdwmf3plkh0"; depends=[]; };
-  GSE62944 = derive2 { name="GSE62944"; version="1.2.0"; sha256="0y8f1cq8bwkjr79vias3snclqcddd8bmh3rl041s4pv5adxgddgn"; depends=[Biobase GEOquery]; };
+  GSE62944 = derive2 { name="GSE62944"; version="1.6.0"; sha256="031x9w6xcgk30ihmgxxlxrn0xjm076s34cfyhw5pap6f3f0x8hi6"; depends=[Biobase GEOquery]; };
-  GSVAdata = derive2 { name="GSVAdata"; version="1.10.0"; sha256="0lbh07ygyns6db3g0208691q7ry0mjg2lhis4pqw6rr122mvhh4l"; depends=[Biobase GSEABase hgu95a_db]; };
+  GSVAdata = derive2 { name="GSVAdata"; version="1.14.0"; sha256="1zqm9g1vib9r6rsj7wim2pkv17pl1136k3k5rxmyvgx7rl1sb5li"; depends=[Biobase GSEABase hgu95a_db]; };
-  GWASdata = derive2 { name="GWASdata"; version="1.12.0"; sha256="0ygkrm7gybfj4wb8rc56zrwyfbpgl1kz50dyrz5glwkgzxqn00dq"; depends=[GWASTools]; };
+  GWASdata = derive2 { name="GWASdata"; version="1.16.0"; sha256="15zki8i7mv59xr6rgfmf0x33mkvf8fv6h5ya35iydx5409lyaxm8"; depends=[GWASTools]; };
-  GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.2.0"; sha256="0jlmkqkjrffspny20w6yci319ry63sjnsychz6z9gwacy72fz14y"; depends=[]; };
+  GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.6.0"; sha256="02vwxdb4dsmx3iw3p8hfvigw67hrggycdxkqpkr1n03z6g50vbcv"; depends=[]; };
-  HD2013SGI = derive2 { name="HD2013SGI"; version="1.14.0"; sha256="0whm9irlfmjamsjcjbxb1c574g60iscx10f498l9vh857iv1q8vl"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; };
+  HD2013SGI = derive2 { name="HD2013SGI"; version="1.18.0"; sha256="102hv9ivrmdjfrqnyg9g3qi4y2i9kdby9xswlq5l7l14vbgqxn6b"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; };
-  HEEBOdata = derive2 { name="HEEBOdata"; version="1.12.0"; sha256="1j79sxx3ig61ny8r0j40m4fba5rf61k8rq23b5w6rcq6zwysymh6"; depends=[]; };
+  HEEBOdata = derive2 { name="HEEBOdata"; version="1.16.0"; sha256="1spmx6lc0cpcwcna2sm5mn27n66rxpzw30biq11ca2j7ax0phh8v"; depends=[]; };
-  HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.14.0"; sha256="0h42jvnmfdr14glnlspgiznxx5qh19pn6abw4qyf2q24yps5hrpd"; depends=[]; };
+  HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.18.0"; sha256="12gi6idn1vgl13ir93ig60mmgfak5l35bgzc75paa167iqvfswff"; depends=[]; };
-  HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="0.108.0"; sha256="0i48h84qpcwraj8rhmisk6g7l6m9wf5a4p5pl6kr0ipfpr6fnh2b"; depends=[]; };
+  HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="0.112.0"; sha256="0wz7kfj2mkrg4q53w3ddj2l4didlmckkck5a80vk51pflfvxrdhi"; depends=[]; };
-  HarmanData = derive2 { name="HarmanData"; version="1.2.0"; sha256="0xlqp2fx8glhykdnc38mjsxjc78bb3q72jx168djq2r0z3gxivai"; depends=[]; };
+  HarmanData = derive2 { name="HarmanData"; version="1.6.0"; sha256="104ws2bpy865m2hjfgj1bha4ix6kk96ml085lksz9vszkxhi7al9"; depends=[]; };
-  HelloRangesData = derive2 { name="HelloRangesData"; version="1.0.0"; sha256="0lcmww0pyx3pjqnhvkdz9zv5s0cbrgxd7hvf0fz7hkcqn3sdw2p6"; depends=[]; };
+  HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.0.0"; sha256="03czwi1ps7lpjppn5mpfa013rna0z3ywb783a31yv7g93r97gqna"; depends=[ExperimentHub]; };
-  HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="0.108.0"; sha256="1sw1i7i5hi1kx7h9nqbnxb6h4wl97yfirsfw4m9sb879ycbwq58p"; depends=[]; };
+  HelloRangesData = derive2 { name="HelloRangesData"; version="1.4.0"; sha256="1c7gfhwr9g6hv0p3s4yd8v9rhjp3jmrnzsqsqq4ysc2i24nf7drr"; depends=[]; };
-  HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.10.0"; sha256="1mka0is34lxg7cyrsdahkm11xnvlz17qk7bs8bwlkxc7gz90aj3j"; depends=[]; };
+  HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="0.112.0"; sha256="1qxg7650lbfbjl9p75clrybsdbzd0yzpi8pi2biv83jgqkkjrd0b"; depends=[]; };
-  Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.10.0"; sha256="0lirsd1875v3qkmszj2pbaj8r552ndlvxhfhbl62rwsia5g5i356"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; };
+  HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.14.0"; sha256="0708xgm495a330h70yi2qd494h6gf0n46j016mw9bc4gzbb7aq9p"; depends=[]; };
-  HumanAffyData = derive2 { name="HumanAffyData"; version="1.0.0"; sha256="03cxc5bs8q27n8jrclnndgw02mjqf9wn4gc8z39x2bd4gwhjjvpv"; depends=[Biobase ExperimentHub]; };
+  Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.14.0"; sha256="0lah9l8gd5gs1wj68l9hqakcwha0rl88dg2p0zk92nff64jxn3pj"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; };
-  IHWpaper = derive2 { name="IHWpaper"; version="1.2.0"; sha256="0d0rns36wb57vizgmjwsjmgb3qgp8ng31d81n1z0wzhdwrdir9vv"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; };
+  HumanAffyData = derive2 { name="HumanAffyData"; version="1.4.0"; sha256="0xgb3rrvgrx6sdwbb8gb1q8mgf0s2giih8l8d3hzvnxazh80qs8b"; depends=[Biobase ExperimentHub]; };
-  ITALICSData = derive2 { name="ITALICSData"; version="2.12.0"; sha256="1l3xvgav4k3d5xn0wa0046dx2i395gndvwh8ni1452dx98wj8xlw"; depends=[]; };
+  IHWpaper = derive2 { name="IHWpaper"; version="1.6.0"; sha256="08gkdi1lra9mn1cbsqddqn3pwj3pfy2yfgzay5igr7n1akfmgh7k"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; };
-  Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.10.0"; sha256="17mcl8850pzfr5lmdis8659kfbfy63qgp61h3wrd1nbqn0skk5q8"; depends=[]; };
+  ITALICSData = derive2 { name="ITALICSData"; version="2.16.0"; sha256="1rrfxc3hzlq2i0z5j432w3s33ln56i91a06q49piisz06vviz6yv"; depends=[]; };
-  IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.12.0"; sha256="1d4ycz9di7nqqpf2kcjaldg49s8jfvyfgb5q5i1ni68grzfi6p4k"; depends=[]; };
+  Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.14.0"; sha256="12mdy4rb8gzhgdqdwvf96lcxmi37wysyanpw1dym03vq6fxmcfrq"; depends=[]; };
-  Iyer517 = derive2 { name="Iyer517"; version="1.16.0"; sha256="0gs7793q5zbgiynpvkq46l0yc862sfy87090jkvw1m6mlci89qkk"; depends=[Biobase]; };
+  IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.16.0"; sha256="149ip8wvbiz2k94rj6n1ims4iq7zkgicrxrkn059bvxgj5gm6pvq"; depends=[]; };
-  JASPAR2014 = derive2 { name="JASPAR2014"; version="1.10.0"; sha256="1cbqrn54fb7jqfaswlvq4ljshfwg08ra07sh1g4dpv0nb2kkgv18"; depends=[Biostrings]; };
+  Iyer517 = derive2 { name="Iyer517"; version="1.20.0"; sha256="1s4ya32pfmz3fil7v3r8zm13f80cx5zny0ywvh6ln27a7hr10ida"; depends=[Biobase]; };
-  JASPAR2016 = derive2 { name="JASPAR2016"; version="1.2.0"; sha256="0j0ilzml2i0j7bql2qly14h1xnrvdar65fkaxkvv2ncbyxgisiky"; depends=[]; };
+  JASPAR2014 = derive2 { name="JASPAR2014"; version="1.14.0"; sha256="03mrbgyx3jf4ccapyj04akf40aqbmky03fgicgcaff724kwda8rl"; depends=[Biostrings]; };
-  JctSeqData = derive2 { name="JctSeqData"; version="1.4.0"; sha256="0gw78wm9s8mz87zidfm49ly79gws8xfd7y4my4k39l1caqhlzbdd"; depends=[]; };
+  JASPAR2016 = derive2 { name="JASPAR2016"; version="1.6.0"; sha256="0ki62mfjk7a6nsk0079xf3w8c8an3syy5rhlqcmyynwab344mqm6"; depends=[]; };
-  KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="0.108.0"; sha256="1q209v42ncczqwfmc71i0s3x6axlzqi3k474xccnhpsxcaz3s0a6"; depends=[Biobase BiocGenerics]; };
+  JctSeqData = derive2 { name="JctSeqData"; version="1.8.0"; sha256="1zd270pxiy1d5jr9akgvf77jbllw82flrhx3q1z1m0kds7xlb398"; depends=[]; };
-  KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.12.0"; sha256="05mplbzvwfqnn8ffdha1s99bhkq537vsmk46zq217cn0cl4csqrl"; depends=[Biobase BiocGenerics]; };
+  KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="0.112.0"; sha256="0w1x4ab9i40y8jp3yhwcv0lyh83g926cwav77m179mg7n9l6c3lv"; depends=[Biobase BiocGenerics]; };
-  KOdata = derive2 { name="KOdata"; version="1.0.0"; sha256="1ggr9ayhz3h2x7g4n3l3pnnhdznw1iyp45n8sixp90ha9133hv9b"; depends=[]; };
+  KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.16.0"; sha256="034j38cd81fkay7h7fjjk56ywhvbq6pdc0ldxizrfw3z8hhacy85"; depends=[Biobase BiocGenerics]; };
-  LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.12.0"; sha256="101xq53ra360fhifn274nmdsbbj7pralhhgzzy0pr00a48x68lwc"; depends=[IRanges KernSmooth]; };
+  KOdata = derive2 { name="KOdata"; version="1.4.0"; sha256="1difb3nsalc5rl9bbaj0g99d5sl3sjlmcy4qq0mddaagw4b5lyrr"; depends=[]; };
-  ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.6.0"; sha256="05g6qn1zkbk6daps9nnzqnn748qxda0avi2mbzsrcfqp231dkhs8"; depends=[methylPipe]; };
+  LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.16.0"; sha256="1z86ll0kpmd9jq5nq7fi2yhvp3ifqfmjk7gfpgd2mq28zw8rwn47"; depends=[IRanges KernSmooth]; };
-  LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.10.0"; sha256="13x5hj6503aavyv4bygf26krvj8ppwaalrhizwylkdn4zglv4nv1"; depends=[]; };
+  ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.10.0"; sha256="18k3m8k0jdry8qih7nrd7sxlvpcv1yfjj1a6y6a2ifmjq23ymcsl"; depends=[methylPipe]; };
-  LungCancerLines = derive2 { name="LungCancerLines"; version="0.12.0"; sha256="1xsas3d0n6h5xy03ybqy82cfh1gq97lim33mi163j598yhd1c6zs"; depends=[Rsamtools]; };
+  LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.14.0"; sha256="0x0rl6iibspl9w82kbbv7bf9mfhs60j8ly7cxm908x5xfzwmms05"; depends=[]; };
-  M3DExampleData = derive2 { name="M3DExampleData"; version="1.0.0"; sha256="07awll0dmi7wnr5w7nc89g1mqf6b9r2mw858x0vzwkwf58qixqh0"; depends=[]; };
+  LungCancerLines = derive2 { name="LungCancerLines"; version="0.16.0"; sha256="12k305wv38grgdkypr7bvhxd1ca1vsxmyz7487yfv1nl72sla36a"; depends=[Rsamtools]; };
-  MAQCsubset = derive2 { name="MAQCsubset"; version="1.12.0"; sha256="1gngz2a17n4lmcy59wcxywlgarp9h985wzmxz59vymx9n3in5lj5"; depends=[affy Biobase lumi]; };
+  M3DExampleData = derive2 { name="M3DExampleData"; version="1.4.0"; sha256="0wq5vmk8p3ng8snljrlkwx6vl38fnwq8fn5flymfnq1snvci22h2"; depends=[]; };
-  MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.12.0"; sha256="1ic7xdlfw0mikgmq961dc58sqfiyq2464q9w49hblcl25gf2pxi0"; depends=[affy Biobase]; };
+  MAQCsubset = derive2 { name="MAQCsubset"; version="1.16.0"; sha256="06vmzicndnyb4banfjv2mgy77cqqbdrx0y7pxyvvpfy5xl1kk3ii"; depends=[affy Biobase lumi]; };
-  MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.12.0"; sha256="1jiydpacyvdvlynlhcqrnc9xysbvn755lzrcz8pm2h79wanpcpsp"; depends=[Biobase lumi]; };
+  MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.16.0"; sha256="0jfq8pc2arpp5kcdhsgvz08nm7sjambh7sx1n204glqm61mv5rqw"; depends=[affy Biobase]; };
-  MEALData = derive2 { name="MEALData"; version="1.4.0"; sha256="01pn75kkvk6w1xim9hwqqpjv9gb1g7a4f4110hhllabhih3ygjlv"; depends=[]; };
+  MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.16.0"; sha256="14p1ifaadmkpykgh675gk03aspc1159k8s9ksz17p6bxkwy2sb6v"; depends=[Biobase lumi]; };
-  MEDIPSData = derive2 { name="MEDIPSData"; version="1.10.0"; sha256="1vdmh5rlygjmrkzy599rcr90anci3dzzz666b87b2w3z04vvyyqp"; depends=[]; };
+  MEALData = derive2 { name="MEALData"; version="1.8.0"; sha256="0r4c7vx2cpix5ryjv7314zf30ifivad7yj1wi7a0pck6rjbny81j"; depends=[]; };
-  MEEBOdata = derive2 { name="MEEBOdata"; version="1.12.0"; sha256="0c4b69dhpkxarbna63dzacm81kizfdm425xmcb4xs0zs6jv6kj4j"; depends=[]; };
+  MEDIPSData = derive2 { name="MEDIPSData"; version="1.14.0"; sha256="175bzk0yrwhkwagpkvi8y87l8zfhgr44xkpkw4jii3whpyxgaiyx"; depends=[]; };
-  MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.10.0"; sha256="0yilicgglvb22gl5zv7rdjc5yczfz7kvzysnajb0qgpw94ha1wjx"; depends=[]; };
+  MEEBOdata = derive2 { name="MEEBOdata"; version="1.16.0"; sha256="1110sgklk2lmvjggvcm3wzfipij6nj8brq7bdc9dbjwhiiqdv0m1"; depends=[]; };
-  MSBdata = derive2 { name="MSBdata"; version="0.12.0"; sha256="1g0piddp8qpqf8nncsv73zymad5qmf2hxam44sn1m6227m4r8xdc"; depends=[]; };
+  MIGSAdata = derive2 { name="MIGSAdata"; version="1.2.0"; sha256="0vx8p949sxsfp9ajs4dwh2yf01l9lclngr7ync3r962knmd74yc6"; depends=[]; };
-  MUGAExampleData = derive2 { name="MUGAExampleData"; version="0.108.0"; sha256="0hw4f6syk1m4zxr423cx7asahq1lkbi7pnhspda7m5127fs5ikxa"; depends=[]; };
+  MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.14.0"; sha256="1s0fraym521bv35q2ms1v6jv23bvfypwkhcy8ffhf6k1lcr4q7gj"; depends=[]; };
-  MethylAidData = derive2 { name="MethylAidData"; version="1.6.0"; sha256="1ws6vn9pg1hmcyajrvyg645glj2khg43v75ppn72ylfysx8h86yl"; depends=[MethylAid]; };
+  MSBdata = derive2 { name="MSBdata"; version="0.16.0"; sha256="0lygk817f55agf4rvb85k50ns0cy8wckbqvwqb3w22z4plixyjjf"; depends=[]; };
-  Mulder2012 = derive2 { name="Mulder2012"; version="0.14.0"; sha256="0ah5digpg8j3dwhqx0gqf0r46vwpqmglk89k4h504vn18ff99vbi"; depends=[HTSanalyzeR igraph KEGG_db MASS org_Hs_eg_db PANR pvclust RedeR]; };
+  MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.0.0"; sha256="1hgwcd4r8x489hyz747psyw4jfbia6yw5mjrm745z1yl8y445mq9"; depends=[]; };
-  NCIgraphData = derive2 { name="NCIgraphData"; version="1.10.0"; sha256="1pdm201xvhhbdd2blrg2yxjhm00pqvkxk0x1saykb6rrdq2zl16w"; depends=[]; };
+  MUGAExampleData = derive2 { name="MUGAExampleData"; version="0.112.0"; sha256="05gjfd4vvkp4mdrimsxjwa3mgps1cwdwr03w1il77awa23fvqp52"; depends=[]; };
-  NGScopyData = derive2 { name="NGScopyData"; version="0.108.0"; sha256="0bk50jfmbq8p8c81jmcy85xqnqrw2amsa3f7hdnkj36k2gmqzzyf"; depends=[]; };
+  MethylAidData = derive2 { name="MethylAidData"; version="1.10.0"; sha256="1rklalmjckm5ysvfjy4arqafabjp8w4495v385mgwrlv6rqa5yv7"; depends=[MethylAid]; };
-  Neve2006 = derive2 { name="Neve2006"; version="0.12.0"; sha256="0s0brv5k92bhls8flbq8qbxs53gnsgibr9mqb3jkhjz039ir749s"; depends=[annotate Biobase hgu133a_db]; };
+  Mulder2012 = derive2 { name="Mulder2012"; version="0.18.0"; sha256="1bpc74xiyh1az8nkgqpwk3pa2313r7qcxdzdqa7sr8drwhgj7hbi"; depends=[HTSanalyzeR igraph KEGG_db MASS org_Hs_eg_db PANR pvclust RedeR]; };
-  PCHiCdata = derive2 { name="PCHiCdata"; version="1.2.0"; sha256="1bksxvax6j9wxjszkq0cx7jx84i14qb9dqlgjahjr559slkqbzmh"; depends=[Chicago]; };
+  NCIgraphData = derive2 { name="NCIgraphData"; version="1.14.0"; sha256="0764l9lxc64fjflzqqxyjckxrsjxk89k73g3kpdfmkvxdn7nchh7"; depends=[]; };
-  PGPC = derive2 { name="PGPC"; version="1.2.0"; sha256="0im1s07l3rbcwmglm1vw5yq8qp307bbbkij851cbs639wlq7s22w"; depends=[ChemmineR EBImage geneplotter ggplot2 gplots imageHTS limma plyr RColorBrewer reshape2 SearchTrees splots]; };
+  NGScopyData = derive2 { name="NGScopyData"; version="0.112.0"; sha256="073g9krsmhdh3fygqd3rfxnakxn45nvxs0zr7k6xylq06yfy3gza"; depends=[]; };
-  PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.14.1"; sha256="0p898qdp5fnfads1n6rlwi6c2zp332m0jqdw21fsr3lx59d3s8jv"; depends=[affy annotate Biobase gahgu133plus2_db gahgu133plus2cdf PREDA]; };
+  Neve2006 = derive2 { name="Neve2006"; version="0.16.0"; sha256="0dvdq54jp5q59iwny008m1qyj9s6gb4blmzjlsnz3505ivai2mgs"; depends=[annotate Biobase hgu133a_db]; };
-  PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.8.0"; sha256="19b2q9p76cyjl8dgmjagdr9zxr2xfinpp4qr26772s7bsxwq0rll"; depends=[PWMEnrich]; };
+  OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.0.0"; sha256="1wffaljwgl0r051bj5vf0wjch2vg5y8pkwgbhdg6k6c97pf9gyd7"; depends=[rJava]; };
-  PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.8.0"; sha256="0g2mjiyv415n0cl0nrj5va61f5pf9wdv27q92xsbzp0fgybjd4hy"; depends=[PWMEnrich]; };
+  PCHiCdata = derive2 { name="PCHiCdata"; version="1.6.0"; sha256="1dqhwz6jqgmnvias2hjlnj10c0chsvhj904rgvk0ch9y47v0f4yx"; depends=[Chicago]; };
-  PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.8.0"; sha256="0zhrvynj3my4pdd57nybw62jkaqm039i7vm9v253qzdaf8h0xs3w"; depends=[PWMEnrich]; };
+  PGPC = derive2 { name="PGPC"; version="1.6.0"; sha256="1nfkj3ipl52xscz8qpmaspydvfzsjacrw89alhxpgsb71d59nbkj"; depends=[ChemmineR EBImage geneplotter ggplot2 gplots imageHTS limma plyr RColorBrewer reshape2 SearchTrees splots]; };
-  PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.2.0"; sha256="1i2qa0rd0ncx77cr1d3f4wb939na5ycpli3q3d8k2l027nl4rjks"; depends=[]; };
+  PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.18.0"; sha256="19528l0f53nfnq1sdsbp3y6z5zx933csz5f72mh43408a6d384rk"; depends=[affy annotate Biobase PREDA]; };
-  PathNetData = derive2 { name="PathNetData"; version="1.10.0"; sha256="16k9nvxhs80vfcvjhr3dssxjq53zlm1802dkr24icngpnfmlwnj2"; depends=[]; };
+  PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.12.0"; sha256="0s3dqm1yiy4svkb6cj6xf6i81cc0mai0xjlbl3jvqdpy7npl0a08"; depends=[PWMEnrich]; };
-  ProData = derive2 { name="ProData"; version="1.12.0"; sha256="14mrgfxk3jrzy3ghdcrh8flfkm4b6xi42sjb8sws57jfcda0zd2v"; depends=[Biobase]; };
+  PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.12.0"; sha256="14wqs4lxq1zav24znvqmkzbbqfapplg7xib9kbcxnqxkr509x4fz"; depends=[PWMEnrich]; };
-  PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.0.0"; sha256="1gsz60vg8h0w13v29bkj3pczivn7cpkg515rl5rj42vjxbw4mnsh"; depends=[CAMERA LOBSTAHS xcms]; };
+  PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.12.0"; sha256="1zmrv53944s7a6cm96m2wgj6j9cfg5kjwgdfalkmii3vm400f6lr"; depends=[PWMEnrich]; };
-  QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.4.0"; sha256="1l0m384swvnxz4jrcgzc0a4fr03g12by1b5y9ncwdkwrz8imr52q"; depends=[QDNAseq]; };
+  PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.6.0"; sha256="0wxf6p5r7h9zaxkzg1bf294d837klwscbd0gcxms26hgdj7pv2d1"; depends=[]; };
-  QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.4.0"; sha256="1sp8jsjy0gji38sx44qdrp9v0s0inw0r7hrgwbjvr6vn6xmifg6i"; depends=[QDNAseq]; };
+  PathNetData = derive2 { name="PathNetData"; version="1.14.0"; sha256="1k5npvxijzf3f7fxkmljajmjmfpkd36q8a2zpn24c4v19vglnmzx"; depends=[]; };
-  QUBICdata = derive2 { name="QUBICdata"; version="1.2.0"; sha256="148rgjgj1fkvc4nw7mszhc2dagljhx672vpyvldjr4cnkwwd9vwz"; depends=[]; };
+  ProData = derive2 { name="ProData"; version="1.16.0"; sha256="0vgs9xnwrqfn8px4c4q0y3kxfwk5zldwpykdhkjn63ycamlfmq25"; depends=[Biobase]; };
-  RIPSeekerData = derive2 { name="RIPSeekerData"; version="1.10.0"; sha256="0bfpr197gjhwszpmvdfkmfa92yrc9jp567h5whzl0mb687k6ax3n"; depends=[RIPSeeker]; };
+  PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.4.0"; sha256="1qilqzfmhb4fq2rkafy200s94gaj9ln6c0j8gw3q5ql6kzclkq2i"; depends=[CAMERA LOBSTAHS xcms]; };
-  RMassBankData = derive2 { name="RMassBankData"; version="1.12.0"; sha256="1fzylbwhqn5al98c1jmdj7bzn7np233h617hbzcxblknaglafv0m"; depends=[]; };
+  QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.8.0"; sha256="13b72z76z5nqb2snga4rn0jrsd12c13x4b1q9i15j2lxnklcw11w"; depends=[QDNAseq]; };
-  RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.12.0"; sha256="0dv23vr84xr3rjk0syx9d1x9zj2d42rl3yfsbh2aaf1rcrjafc14"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; };
+  QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.8.0"; sha256="17azrrn9fkiq1z4xxcg2afwh25iyvi93lq9p13zcpzg75fx5ccvc"; depends=[QDNAseq]; };
-  RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.12.0"; sha256="13pb2ljr4mq741vc443r573ynbynjsrhmas5gf2qnyn4j4wj5bra"; depends=[]; };
+  QUBICdata = derive2 { name="QUBICdata"; version="1.6.0"; sha256="01i0n2sbi3l5gmkrvnc5r1c3fv57xli1fav7yal1x6vckqgma2ba"; depends=[]; };
-  RRBSdata = derive2 { name="RRBSdata"; version="0.108.0"; sha256="0sjw006kzikck8kdfvpqyx8bkhmfcbz363imgm72avzdqn7z5430"; depends=[BiSeq]; };
+  RIPSeekerData = derive2 { name="RIPSeekerData"; version="1.14.0"; sha256="0znhpk57bivhn94vd1czcrhcigi8wcascx9ycvbvfnbnibpwcsac"; depends=[RIPSeeker]; };
-  RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.2.0"; sha256="0gf5l0mzihhl4rhfqd81g4ql8pvwm2lgj9qjybfp94pr3h9kkfvx"; depends=[RTCGA]; };
+  RITANdata = derive2 { name="RITANdata"; version="1.2.0"; sha256="0jl1grvgmrvvv5f4p0s6ypcpfbdlrc1s0pqqib7fw1qi1hmik5rj"; depends=[]; };
-  RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.2.0"; sha256="0kkg0ds8p5rrjcdzq81g1bplxl685k5iki9w11kwpkmnnxslf5f8"; depends=[RTCGA]; };
+  RMassBankData = derive2 { name="RMassBankData"; version="1.16.0"; sha256="15i1yy7vhwbz3vjkcdgybqaiwr3x7w9fplscachb3xpw6d5g52n0"; depends=[]; };
-  RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.2.0"; sha256="0088cm640mzbzbyj1pmvi35l0s2zpl5x2pmhj2lz2zjp4dis2g3p"; depends=[RTCGA]; };
+  RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.16.0"; sha256="0z3ijyvkajpa08d6i1lb1bfkfwhqkjizwn17hrinps3k9bzymni6"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; };
-  RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.4.0"; sha256="0qhg1dx77xarjzb41dpvhlvl9aqwsyscavk3n3w33zpn1r087v33"; depends=[RTCGA]; };
+  RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.16.0"; sha256="06ja4rm3f310vj1sa473njsgaagmr3zz04pj3qp5cpq1pdcgsmfi"; depends=[]; };
-  RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.2.0"; sha256="1grrcrd8lsjfk056r018y2rkn2zr31k4jc854mllh7sgpg0jr6br"; depends=[RTCGA]; };
+  RRBSdata = derive2 { name="RRBSdata"; version="0.112.0"; sha256="1vjh1x652ll33sjahair95n1l98z847ks2907g84sbkwhvfzhkrm"; depends=[BiSeq]; };
-  RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.2.0"; sha256="1c7j35jn0076v3pv0h2yiphl2b9ga8hq0d6xb6hm7jasgq4i4w25"; depends=[RTCGA]; };
+  RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.6.0"; sha256="0grqjfiwi9i6whgiz73xz2havcwzjf3r23rg5wvxhk1bapxidxgv"; depends=[RTCGA]; };
-  RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.2.0"; sha256="1mfbq20s2zp234arkqy0g5km7y8jnymwnm4vl13vxqqcv12f3kr8"; depends=[RTCGA]; };
+  RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.6.0"; sha256="02mr0kn5hf2nqi2s7lk440c6a3n34a8apb1j7rpi8nxp4lp757if"; depends=[RTCGA]; };
-  RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.4.0"; sha256="0jxr2g8x5z4vyhs9n3ciiis45bs3jg3vg1v4mwxl4v4gys8p3i9b"; depends=[RTCGA]; };
+  RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.6.0"; sha256="1mjxpdwziv0xy00hn0n7r0bvgh1gagrw77b5jnla3pz0nzhqwwhy"; depends=[RTCGA]; };
-  RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.4.0"; sha256="0ag3kmh2zfg9rqpmiih686klpcqd05l2cf5zfvg0vjwcim30xph2"; depends=[RTCGA]; };
+  RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.8.0"; sha256="03m4rzzwmjzj1ijg10ir1d5nmix04l0mi2jkddiqgq8ryl231dk2"; depends=[RTCGA]; };
-  RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="0.108.0"; sha256="134ixgi809nmp54p7h94878pl61w3djrizvb32cb228a6djc1aj4"; depends=[Biobase]; };
+  RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.6.0"; sha256="0v4z9hi9n8fxlk1gph7xapz2sgrakzm32xvl4qyjvqcfzmrvsjzy"; depends=[RTCGA]; };
-  RforProteomics = derive2 { name="RforProteomics"; version="1.12.0"; sha256="1hzgq16mhrd0n7myav91ykmbvi3r71g625x52lvi61shjism5jp7"; depends=[Biobase BiocInstaller biocViews interactiveDisplay MSnbase R_utils rpx shiny]; };
+  RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.6.0"; sha256="1dcqjfkjncxa32j2dp1dlhfl7cjlr5gpzsxvbals420sqn6pbh0b"; depends=[RTCGA]; };
-  RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.6.0"; sha256="1dssr1d9md7xl7fm1b537wxsa1bqqwjvb8mnrmqwl3ish0asy525"; depends=[GenomicRanges]; };
+  RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.6.0"; sha256="0iydym4bggbdwcnb916wqx9d8xxdm3aqbilknf31fvn7gyx76n5x"; depends=[RTCGA]; };
-  RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.6.0"; sha256="172rbvi4gqsygb7fhdymzm0a2r4wyikgzfaxgjj4bwkl24lss6ac"; depends=[GenomicRanges]; };
+  RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.8.0"; sha256="1jyg1h1g6bkz0rvpsb0y2ksx2k8s1lm6i9jrkj5b9p9sv28fdiz9"; depends=[RTCGA]; };
-  RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.6.0"; sha256="100dzzmmvmb5s43hckn286waja0qkd5rhba0cas3ifg5n21inbyc"; depends=[GenomicRanges]; };
+  RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.8.0"; sha256="01s06w9aavgr19jf3kswxb2bg4v5r3j5md17j4qf698l82pjkigq"; depends=[RTCGA]; };
-  RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.6.0"; sha256="1jdr4vz4dp4q1ifjz38s5i6lwdvaws29176679m0xsckmvw8rlf8"; depends=[GenomicRanges]; };
+  RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="0.112.0"; sha256="1sf4fbrgcmq4jy3g4kh8xlbmvvs6ww9s8p0z8cba2ga0v440nzk4"; depends=[Biobase]; };
-  RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.6.0"; sha256="0bfcs51lmrm5ydd5zbkpkaw69ziq3yg00hi0kkcjrhk7nn1kjp66"; depends=[GenomicRanges]; };
+  RforProteomics = derive2 { name="RforProteomics"; version="1.15.0"; sha256="1jjc0hs6nmx56l5gl5rgqkrpv3shdwl4qjvn25ayv6dbvxajifw3"; depends=[Biobase BiocInstaller biocViews interactiveDisplay MSnbase R_utils rpx shiny]; };
-  RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.6.0"; sha256="01vwk652hhh6rc6l0q0ylnzh0ng5ck91kki37qib7c714fy6f1fa"; depends=[edgeR]; };
+  RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.10.0"; sha256="0ixc2vhfm8y51p7iycr1mv98dacazj6f7bn5naffy607d9ryylb2"; depends=[GenomicRanges]; };
-  RnaSeqTutorial = derive2 { name="RnaSeqTutorial"; version="0.12.0"; sha256="07jkzxavpyg54ddh4xmzxsilcrr8x8w7lj6c4s02s8j23rxzxi2h"; depends=[easyRNASeq]; };
+  RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.10.0"; sha256="14h4lqx8jymla7immhiisxkcch5pki26yk9ywgh2mwwkz5b3lmlr"; depends=[GenomicRanges]; };
-  SCLCBam = derive2 { name="SCLCBam"; version="1.6.0"; sha256="1lhc5c6icys4qnsbc2ixck3h63fsa8pnypam5k6wbvw79afr4xnm"; depends=[]; };
+  RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.10.0"; sha256="0adds1l1hp4cv98jzf4jp6rhwfyv63dnzcp7gzb91wq9wmmhh81w"; depends=[GenomicRanges]; };
-  SNAData = derive2 { name="SNAData"; version="1.20.0"; sha256="1ny0fdgx2kv6hs0rqnc70aixsa2cs7i2r17dklv529iks49i3n2n"; depends=[graph]; };
+  RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.10.0"; sha256="1a4389ds0kpq8q1brf7r7f368x7077qf1x53amixi4s15z3sqxzl"; depends=[GenomicRanges]; };
-  SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.10.0"; sha256="182agiw245zrb7lbyn1c38w1kljqs73lkvhvrlrilww1bfhwlrwc"; depends=[]; };
+  RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.10.0"; sha256="1q7gqs3n9cv6fn95n79ir6p2jxccdx133az4f3ab198kxbdkn5bc"; depends=[GenomicRanges]; };
-  SNPhoodData = derive2 { name="SNPhoodData"; version="1.4.0"; sha256="1w36157kdn1fji5pgj75bf88isfhvavpgyxnm9dfnzz5r1qaxx79"; depends=[]; };
+  RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.10.0"; sha256="0mimmfhssjr1h2fb8h0m7gjaw5z80vsnzjlckx9cmirn9112z3iz"; depends=[edgeR]; };
-  SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.6.0"; sha256="1rsagb2nlc8airrdql7sa4rl1h34nhmds4lz0yx5i3dca8jzqn61"; depends=[]; };
+  RnaSeqTutorial = derive2 { name="RnaSeqTutorial"; version="0.16.0"; sha256="0p11ykzr0ypxsn3y0dwpggm826dszl3jzplvpzs60xgplj178m20"; depends=[easyRNASeq]; };
-  Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.2.1"; sha256="143qp77bhrrclfvqqsk86cz7xqsnn5wfi41z9hp4klai0dhgk68g"; depends=[]; };
+  SCLCBam = derive2 { name="SCLCBam"; version="1.10.0"; sha256="1ivxp3pi9dskh2q331dfpc9vz8g3x82sickmhk86mnhr8zwbkx6w"; depends=[]; };
-  SomatiCAData = derive2 { name="SomatiCAData"; version="1.12.0"; sha256="1cqbprdlrz3yz1zjjrd33wy4ybhkfq943pv3pi0bx4yz9gqc5625"; depends=[]; };
+  SNAData = derive2 { name="SNAData"; version="1.24.0"; sha256="1384y6jj8w380qppd9n80s41vz2g7lrlmckjszga0csc1qxx8dd7"; depends=[graph]; };
-  SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.10.0"; sha256="0sqdgmqs3ds3hnfn7nmmzhs8m5if8wy8rrfp7q76qhz7winqmqxh"; depends=[exomeCopy GenomicRanges IRanges S4Vectors stringr]; };
+  SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.14.0"; sha256="08myr18h36rczaqvrg2ckhrkivayspcr8p6p4400ynmafk8ihkkz"; depends=[]; };
-  SpikeIn = derive2 { name="SpikeIn"; version="1.16.0"; sha256="0nvxix2hsamcffdg6zqlvavx6l41qmfz7q1ycq99rjmv4rznl1z1"; depends=[affy]; };
+  SNPhoodData = derive2 { name="SNPhoodData"; version="1.8.0"; sha256="1v4cp21h05yi6n26by8nnwajk0kl7qjlh4n9c9r81g7m35qyz7ny"; depends=[]; };
-  SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.14.0"; sha256="16yisl8m9ggb995snsbhsfxxnqr2v2d5k8ay9w2hipkacaiskwcm"; depends=[affy Biobase]; };
+  SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.10.0"; sha256="1hf6lz6k6xvlda7pbp4k3y15a9bid5k3r1fv64slj2d7ahpcqzph"; depends=[]; };
-  TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.10.0"; sha256="1008i15x17k20596da1ai2dxqhyqi9v6bpskd0c66xvhnifmzpna"; depends=[Rsamtools xtable]; };
+  Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.6.0"; sha256="01rm6rhi7izycsbf4qmpn8bnkklh6r7c19dnb3p4mrw14ykcxsf0"; depends=[]; };
-  TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.10.0"; sha256="089ddz2w5kqn3zc07ji9lb7k6msd7r4a6j6aymkx59d10qlx97f6"; depends=[]; };
+  SomatiCAData = derive2 { name="SomatiCAData"; version="1.16.0"; sha256="118cdjbaydibr8vi7jgf3jys0izph8d7986gwnq9fawbswdbhpp8"; depends=[]; };
-  TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="0.108.0"; sha256="0zkawybz6fyfcsga92vw6mx1y1qb6nrp9qcmjvd8ki9phhg7k8yb"; depends=[Biobase]; };
+  SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.14.0"; sha256="0nzvc808lr3yp1gs60ifyq6ig52fqp1wy1pxazjcdsrxajpm8hl4"; depends=[exomeCopy GenomicRanges IRanges S4Vectors stringr]; };
-  TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="0.108.0"; sha256="13ipkl1rd2s0vdz32jp30hz3fz7d9hmhfx626jy9q576iqpqb94j"; depends=[Biobase]; };
+  SpikeIn = derive2 { name="SpikeIn"; version="1.20.0"; sha256="1i38m224mdak52cd469nnm7q7f7llmwym9h03ldcs2i9azxp5dix"; depends=[affy]; };
-  TargetScoreData = derive2 { name="TargetScoreData"; version="1.10.0"; sha256="1jw9nhylj82g5gmhl1a6pirf4jyb1i79mm9a3afqrcgv55a5ksvp"; depends=[]; };
+  SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.18.0"; sha256="0byb8gh2s7wlfdcnq9fkr92w7lxwrz48nlzprxd5b4kj91j1fdq0"; depends=[affy Biobase]; };
-  TargetSearchData = derive2 { name="TargetSearchData"; version="1.12.0"; sha256="0acijg56wx91xqrmgqp1pk8cwl3wf5j4f8csdd9p46frlfa5iw8c"; depends=[TargetSearch]; };
+  TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.14.0"; sha256="1vdk2z4jljwy4kpiy0bkf5ymx0hrc16ardh5rg1xvkra58z79p2j"; depends=[Rsamtools xtable]; };
-  TimerQuant = derive2 { name="TimerQuant"; version="1.4.0"; sha256="1pihpj8q0vrhwip6c35lnv78r3nqcs1p18npb26bxhv02hb8cc6i"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; };
+  TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.14.0"; sha256="0nw9q0gkna2qja720hf766ppilxpi8m2plz68laxhzbc8bgq4g8v"; depends=[]; };
-  WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.6.0"; sha256="0lpmrqmgcv96rbfylgsaffwwp5qqnj7kmfniahhj4zsxyjsy90fg"; depends=[]; };
+  TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.2.1"; sha256="1ipl2lxwcp5ybzxw5hpa00c2syb5l8nnmdbdwchnbwj6j8gm97ly"; depends=[SummarizedExperiment]; };
-  XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.12.0"; sha256="00pdinf4mnl5mbwlzh7vwqw775ag2v2g5b5lqnhmxsnyfqsxgpb5"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; };
+  TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="0.112.0"; sha256="1jpqpnyv3sc6pwh88gfpgc0dyypyi5fy1fim7ybggkc4zv2q69cf"; depends=[Biobase]; };
-  affycompData = derive2 { name="affycompData"; version="1.12.0"; sha256="1yz3y8y169qla8x194zlc3im43827a7233gla6arv552yg3fj703"; depends=[affycomp Biobase]; };
+  TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="0.112.0"; sha256="19965mwk4020xhs206n3gf8v85flf5qf2lnv6hsjfdsmi9clma4j"; depends=[Biobase]; };
-  affydata = derive2 { name="affydata"; version="1.22.0"; sha256="1zizi0p3r3y9h6kk2a1hci9x23i2wbq1krvl9nxd6jzx09fq25sv"; depends=[affy]; };
+  TargetScoreData = derive2 { name="TargetScoreData"; version="1.14.0"; sha256="1y39vdd7h90yw3rz68cbdv55hkw6a7d73ld0l8ihpy3l6ppqa2vz"; depends=[]; };
-  airway = derive2 { name="airway"; version="0.108.0"; sha256="00vxi6i9c5c14gfqm5w9q6lg0h1hb96rfm8jqsvw81lpqqlnyjgd"; depends=[SummarizedExperiment]; };
+  TargetSearchData = derive2 { name="TargetSearchData"; version="1.16.0"; sha256="1zhwnpd2n5wydv7xi9ny8zx1riff3caj3lxr40g1fr1ps35vjdww"; depends=[TargetSearch]; };
-  alpineData = derive2 { name="alpineData"; version="1.0.0"; sha256="0s3xls7b71xn6f9fsqim79cnv4mf5xz1dli9rr4ralzllvh9hm9d"; depends=[AnnotationHub ExperimentHub ExperimentHubData]; };
+  TimerQuant = derive2 { name="TimerQuant"; version="1.8.0"; sha256="0cryfc9qm6mnp0hnznqna372qi00cgjvc1793hrmnx9qkcyiszdf"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; };
-  antiProfilesData = derive2 { name="antiProfilesData"; version="1.10.0"; sha256="1fzjic8prjwpx43imm73g0znzry42rlziyzr5n6zkbgqx44kh398"; depends=[Biobase]; };
+  VariantToolsData = derive2 { name="VariantToolsData"; version="1.2.0"; sha256="0gp2ij4jbwmqhi76a2cnn7wrg227vzvdkwczcsdhawxdjkys8q7h"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; };
-  aracne_networks = derive2 { name="aracne.networks"; version="1.0.0"; sha256="1y2n3xdaccfmij7jaxgzjh1bwvaczp8wsd6757fm8mn1qgalgjdc"; depends=[viper]; };
+  WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.10.0"; sha256="0d3zixbpchvgzrrslsqgp784w3wswqlp50462ry8b871qaqvh16j"; depends=[]; };
-  bcellViper = derive2 { name="bcellViper"; version="1.10.0"; sha256="1pc4av4i0iwxg0v5aqb9rn0m2z8vnqqwxs57x3nsdirhl7pv92qm"; depends=[Biobase]; };
+  XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.16.0"; sha256="0z9rfxr3w0rgd6hqp36i24590scng6hcs9k82am7hvnp54jd3zif"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; };
-  beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.12.0"; sha256="1kknkispmbxhwikhl0b3g2p0885gm82h3bdl6id4rwxvli86db8s"; depends=[beadarray Biobase]; };
+  affycompData = derive2 { name="affycompData"; version="1.16.0"; sha256="1l9mp2l41y1gbpv3yszq8bk5lrnbar8ga03ga14fsj1a4a3hzng9"; depends=[affycomp Biobase]; };
-  beta7 = derive2 { name="beta7"; version="1.12.0"; sha256="0lm2lz36lmz6kxp1ia7cfd129kif9a2vyn2cngjsvhvm2pxplrl5"; depends=[marray]; };
+  affydata = derive2 { name="affydata"; version="1.26.0"; sha256="0ridqhk63d49wnsydf0iy5krnymgrjn3nxq7rnlzb85ryvcawqrx"; depends=[affy]; };
-  bladderbatch = derive2 { name="bladderbatch"; version="1.12.0"; sha256="0dsz57a9si7i06nwvmvn0l65jhc1xbc3ywjh1z32smm8rvn8x90b"; depends=[Biobase]; };
+  airway = derive2 { name="airway"; version="0.112.0"; sha256="0b155g62xy39vr58ni6snskyssll8fv0zvn9jln41xacil7f5pmq"; depends=[SummarizedExperiment]; };
-  blimaTestingData = derive2 { name="blimaTestingData"; version="0.108.0"; sha256="02fksg7kpb9knj7f47l0dbc016min91xf9d5xccpa833wylylyjj"; depends=[]; };
+  alpineData = derive2 { name="alpineData"; version="1.4.0"; sha256="02fjs7liwh8m0n5hc0x51c7s718x3pv5a15qrf195bxsrx6qva47"; depends=[AnnotationHub ExperimentHub]; };
-  breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.12.0"; sha256="0smmvhb38z6wa7inbg5y8skl10p7yybq9qh2847xpzdnivldxfwa"; depends=[]; };
+  antiProfilesData = derive2 { name="antiProfilesData"; version="1.14.0"; sha256="1255z9f75hbkzf6sbanck9rfm65z3vzg6kdjyyablh8wxbimjy2j"; depends=[Biobase]; };
-  breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.12.0"; sha256="0bznvksrmpxp0ba9md96ch2qsk67jyda33b74bzk0hrxkijhm1i4"; depends=[]; };
+  aracne_networks = derive2 { name="aracne.networks"; version="1.4.0"; sha256="1ahdk71ys4zf426swkyzmkaraz3lsjvn5dp4sdhxkxi5fmsx70mg"; depends=[viper]; };
-  breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.12.0"; sha256="0sghqg2fs7khb54x2p3mlc7mynbp417bccszcij9gq43njwfdra0"; depends=[]; };
+  bcellViper = derive2 { name="bcellViper"; version="1.14.0"; sha256="1jw4lfh9p9m9q636jxq69lvjj859b6977k3jrdpjbr0nvr6phwkw"; depends=[Biobase]; };
-  breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.12.0"; sha256="0pg862q0m9m51iqk85gx9ihl17ld0x7i7j39g0y7bcvr7cy1djrd"; depends=[]; };
+  beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.16.0"; sha256="0nbfxln9g8kl18ddzjsmcda1myymyk01ljm9x78cbjcnz6f4w3f5"; depends=[beadarray Biobase]; };
-  breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.12.0"; sha256="0pidz7safi6z2nbrz2wrjqx1ygyxg6ggagv4sfdy53ym07lwfdz3"; depends=[]; };
+  beta7 = derive2 { name="beta7"; version="1.16.0"; sha256="0isvwy72d1764fq92h4315dxirvlp2crsgif9amcq13nv4rn40q6"; depends=[marray]; };
-  breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.12.0"; sha256="197g42apvsp9vaipj4zf3kma90j8zsvx9b8q4crdl5czvkzmpixa"; depends=[]; };
+  biotmleData = derive2 { name="biotmleData"; version="1.2.0"; sha256="09vcahw61zz1pbydfl42c28da3y7002956vdb7nbssj6qnp62pqs"; depends=[]; };
-  bronchialIL13 = derive2 { name="bronchialIL13"; version="1.12.0"; sha256="0amg5fn0dprnz5wwjacm73xbih1bbw04f0vm3rfplpiwqh83cq1g"; depends=[affy]; };
+  bladderbatch = derive2 { name="bladderbatch"; version="1.16.0"; sha256="0rmvlvhih00vvcjss8z31cfq5mqv7s7f2ysra7n9jrkb1hinzpmz"; depends=[Biobase]; };
-  bsseqData = derive2 { name="bsseqData"; version="0.12.0"; sha256="0m0dj3rd7m80la8h58s1lfxfkmz3a242vp3i1yiv9y6c0hca7yq4"; depends=[bsseq]; };
+  blimaTestingData = derive2 { name="blimaTestingData"; version="0.112.0"; sha256="1qqyv21bn5nf876f9l6xjmpx0jz1vrkk5swpp8wjkgsymcvni9fl"; depends=[]; };
-  cMap2data = derive2 { name="cMap2data"; version="1.10.0"; sha256="0l7hnr6w5g0n0ma24xm57dlqdrrlrhm6a4cw4p65hwn9djxxiz1m"; depends=[]; };
+  breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.16.0"; sha256="0k5aqaiqzhxksfiwk2kzzwi7y0c07q8hm7fybn8i1zixvjd8iwfy"; depends=[]; };
-  cancerdata = derive2 { name="cancerdata"; version="1.12.0"; sha256="0rzp8a210vk8j9nlf1g228jsccdbabl99jbd27qi90bbs0kdnkp3"; depends=[Biobase]; };
+  breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.16.0"; sha256="1iw7apcpvivrqsircvxch1kh1xwqwf797d7psyz8iyckkd9kjwy0"; depends=[]; };
-  ccTutorial = derive2 { name="ccTutorial"; version="1.12.0"; sha256="17r030iajkaash8jfzfdb7d2xfd5mn9q27mkc11dycpqbji61q1q"; depends=[affy Biobase Ringo topGO]; };
+  breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.16.0"; sha256="15l3x34xj07ja5xvwy9fsbsyccyfgqpxmghbcjvjl2j3lwfhfdb6"; depends=[]; };
-  ccdata = derive2 { name="ccdata"; version="1.0.0"; sha256="05raawlm17vhiap34z812g1ri5yc77h7qs4lj1gfk1kkcpj2knsf"; depends=[]; };
+  breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.16.0"; sha256="098rjmq04ycfaj1yw116vgbll5656j5qk3xackidn4y0qkgqg9xy"; depends=[]; };
-  ceu1kg = derive2 { name="ceu1kg"; version="0.12.0"; sha256="09xi5fvr7cigs1qs98phcapzqi8jam34gky2pxksi9gkw2n9j451"; depends=[Biobase GGBase GGtools]; };
+  breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.16.0"; sha256="126w884byzkbafn1d1qjp7m27d6mck7d6l23daw41vlrcssxz236"; depends=[]; };
-  ceu1kgv = derive2 { name="ceu1kgv"; version="0.16.0"; sha256="11hyhddf395hyypxsl8na23pwcwlnmr639c927wxqibxxp1lfqsk"; depends=[Biobase GGBase]; };
+  breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.16.0"; sha256="0pvn08jhfmnl530la1ldsks9681xci5ivrdawcq7ggh7bxld56q2"; depends=[]; };
-  ceuhm3 = derive2 { name="ceuhm3"; version="0.12.0"; sha256="03qkfk9mxz510lmr9spv74d3138bvfcpsgp0qnjw3jj2xiwn4jqq"; depends=[Biobase GGBase GGtools]; };
+  brgedata = derive2 { name="brgedata"; version="1.1.6"; sha256="0l2g7iwgm1jipz0vsik9dxsqslj7cv49y4mrxs4g9xsr2l9prm8i"; depends=[Biobase SummarizedExperiment]; };
-  cgdv17 = derive2 { name="cgdv17"; version="0.12.0"; sha256="1cl725dhyh81rsxgv2icfljczbcgsnqba383gjfyf06d2qarby1y"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors VariantAnnotation]; };
+  bronchialIL13 = derive2 { name="bronchialIL13"; version="1.16.0"; sha256="0v0k80zhjkilnj7f567zq6b994csyhqmmd1xbs3006jmnkbnf2ms"; depends=[affy]; };
-  charmData = derive2 { name="charmData"; version="1.10.0"; sha256="1v760z5br1cj5dj97ayl68dv202086v2mcnhn6bpv0kf62q9mia2"; depends=[charm pd_charm_hg18_example]; };
+  bsseqData = derive2 { name="bsseqData"; version="0.16.0"; sha256="11drh9nwk7af04nqgm4gn7lpsfxprg9z158l032jiclfv0dhkqgl"; depends=[bsseq]; };
-  cheung2010 = derive2 { name="cheung2010"; version="0.12.0"; sha256="15z6p2kfrbs9wbsf7rqmg53k5i6gja5hix97sl9bj7y3jkxws62b"; depends=[AnnotationDbi Biobase GenomicRanges GGtools hgfocus_db]; };
+  cMap2data = derive2 { name="cMap2data"; version="1.14.0"; sha256="002l5isc234cg6hs35rvl2iyql6azjvr7dc3rsp0z9nzh9gmzjrz"; depends=[]; };
-  chipenrich_data = derive2 { name="chipenrich.data"; version="1.10.0"; sha256="0zcj4pa03ny4b1rng4ima23jc6sqvsznp52d59vipnqd4jg1ic95"; depends=[BiocGenerics GenomicRanges IRanges]; };
+  cancerdata = derive2 { name="cancerdata"; version="1.16.0"; sha256="15w2zy6cz4ivyw2j973x6alianqci1rqk2x3jzsjaadsij5bn6yd"; depends=[Biobase]; };
-  chromstaRData = derive2 { name="chromstaRData"; version="1.0.0"; sha256="0d0g20mg36mxldl9f0bzqbz9vzp526pqy501k0g7bmj5sbgd2p3s"; depends=[]; };
+  ccTutorial = derive2 { name="ccTutorial"; version="1.16.0"; sha256="1k6f47hf18fwlmjk9k2rkym328q7kwam0yq7mlcavj3w59avydan"; depends=[affy Biobase Ringo topGO]; };
-  cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.10.0"; sha256="04bkk8360pc0sp8n1z16smj888gbglgghklciwpzk2d513wwapdr"; depends=[cnvGSA]; };
+  ccdata = derive2 { name="ccdata"; version="1.4.0"; sha256="0srpibvjf89b8n8gf01njwg8gbi7a174y3fdcmxilfrfjqc9n2ib"; depends=[]; };
-  colonCA = derive2 { name="colonCA"; version="1.16.0"; sha256="1kjlw5qi6yvk6amvnmjjnr5ypvqmslmm9lmkgdgab3s38hyddj2a"; depends=[Biobase]; };
+  ceu1kg = derive2 { name="ceu1kg"; version="0.16.0"; sha256="0dfbm2zyp140n57b9jn05li0bb3dz5cyilmdap2c28fjbyxrqdva"; depends=[Biobase GGBase GGtools]; };
-  curatedBladderData = derive2 { name="curatedBladderData"; version="1.10.0"; sha256="1k957gad0xlv0nzcimypf32dpqvldc1w8lj2a274y8spb66imfnw"; depends=[affy]; };
+  ceu1kgv = derive2 { name="ceu1kgv"; version="0.20.0"; sha256="1bl7b9ys59p9mk54vvsxravmq4xy9fxw3xadkbfdapyj79356r4p"; depends=[Biobase GGBase]; };
-  curatedBreastData = derive2 { name="curatedBreastData"; version="2.0.1"; sha256="1l767mg3bknp91is7mqb13w2kpdihf4vbphwhqyvmzsl5rv2vc7y"; depends=[Biobase BiocStyle ggplot2 impute XML]; };
+  ceuhm3 = derive2 { name="ceuhm3"; version="0.16.0"; sha256="0f8lcws55zixrpwi9m1cqcz0g9k2bvx67h09sxhswswaalqq83xv"; depends=[Biobase GGBase GGtools]; };
-  curatedCRCData = derive2 { name="curatedCRCData"; version="2.6.0"; sha256="1l1lzkyrvpz334xda4z3mxh2ql3zhhmc376znrjfryzi5jbypnh4"; depends=[BiocGenerics nlme]; };
+  cgdv17 = derive2 { name="cgdv17"; version="0.16.0"; sha256="1rq6dm0c1d395p7qixrnl7m3a7kzgih5bibxg65rngcs3fpjw3zh"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors VariantAnnotation]; };
-  curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="1.0.4"; sha256="0xpq25rmg8bxwsvm35qm20l6b7a3kg5p9ngvj2dvnf00jn7vv2bj"; depends=[AnnotationHub Biobase BiocInstaller dplyr ExperimentHub magrittr phyloseq tidyr]; };
+  charmData = derive2 { name="charmData"; version="1.14.0"; sha256="1y3lrmc8pqdnn1kqzy7r1flqlhj8yjj74hlrj3m49bi9isbv1yip"; depends=[charm pd_charm_hg18_example]; };
-  curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.12.0"; sha256="1qjmmxh0cb4y418rl5wg8inkj5cffniw7jd6vjj3j2yiaq9b5d6l"; depends=[affy BiocGenerics]; };
+  cheung2010 = derive2 { name="cheung2010"; version="0.16.1"; sha256="0xhv2zrzlhy4k828kq9rjw3slx1z30g0gwrnz2b9fgrnbd4f8fjd"; depends=[AnnotationDbi Biobase GenomicRanges GGtools hgfocus_db]; };
-  davidTiling = derive2 { name="davidTiling"; version="1.14.0"; sha256="0n7invq1j0lmrylzrggmlndj4ag196rhyn0lvi746p8sxzdapfaf"; depends=[Biobase GO_db tilingArray]; };
+  chipenrich_data = derive2 { name="chipenrich.data"; version="2.2.0"; sha256="0iw4c60fpsixn6r5102s3422dlh1vxy4bdfnf8mf8l3893fgj0zc"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; };
-  derfinderData = derive2 { name="derfinderData"; version="0.108.0"; sha256="041yq05x9d09n82c9wnwqa1rakkf4p1q3rs9vlacl45bdqdbdsa4"; depends=[]; };
+  chromstaRData = derive2 { name="chromstaRData"; version="1.4.0"; sha256="10ldrshic91rrjvrc7gi1lhqdnw9g3j00pz6vwhp6qnksr6lxdpi"; depends=[]; };
-  diffloopdata = derive2 { name="diffloopdata"; version="1.2.0"; sha256="0vvkgfixvs76cymz0nlyzp7sh9jzd1mcbl5pbnnziybwn5fdpw3g"; depends=[]; };
+  cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.14.0"; sha256="0j9jgjcsjr5vc0k0h7bjlvrln57zbl7pibdk7sxb1p56p49pngq4"; depends=[cnvGSA]; };
-  diggitdata = derive2 { name="diggitdata"; version="1.6.0"; sha256="0xyvd8jdpn3y9s88z489cinacb4bnnp1jqg2aj7h9hhaj95pywsq"; depends=[Biobase viper]; };
+  colonCA = derive2 { name="colonCA"; version="1.20.0"; sha256="1b8kfpr2m5r286ah01jha8js4bvqxw0kk64k1gll96ydi1j6nx7d"; depends=[Biobase]; };
-  dressCheck = derive2 { name="dressCheck"; version="0.12.0"; sha256="1mm8hlivhcf9f01aqdcipq4wz7x3ga8znpcpi69jgh3iadf5x2xq"; depends=[Biobase]; };
+  curatedBladderData = derive2 { name="curatedBladderData"; version="1.14.0"; sha256="1xwg0m4iijvilhzc7sxspj06pm1ysldasv89yi2vskpilm5y1gci"; depends=[affy]; };
-  dsQTL = derive2 { name="dsQTL"; version="0.12.0"; sha256="00nry3qf9r79x65scyfghjyj2qbc6ji0l7c1rayrk5s6pxj0v0hw"; depends=[Biobase GGBase SummarizedExperiment]; };
+  curatedBreastData = derive2 { name="curatedBreastData"; version="2.6.0"; sha256="1x3wqxhafhbns7bngbbqzmjxw3rrb0a4xa2z7pdnlhxxij10mycd"; depends=[Biobase BiocStyle ggplot2 impute XML]; };
-  dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.14.0"; sha256="18ghl3l7ps6xz90gyrnz3zc0rba99yg8ry9fpfbv7yni888hl9bx"; depends=[GEOquery marray]; };
+  curatedCRCData = derive2 { name="curatedCRCData"; version="2.10.0"; sha256="1h0wys79wr3csq93yvz6rzy964ydjyzfciwjp8099mxrbxsw538s"; depends=[BiocGenerics nlme]; };
-  ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.14.0"; sha256="1s03jpb83j8xgwxdr5z7233175jhd4w7vikalxvh1mvk9bqa8rmk"; depends=[affy ecolicdf]; };
+  curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="1.8.1"; sha256="1ip9v0v6lr7xg1j3zww99n0d5ar8l4d3c74mfhl9jg9c27vqcq95"; depends=[AnnotationHub Biobase dplyr ExperimentHub magrittr S4Vectors tidyr]; };
-  estrogen = derive2 { name="estrogen"; version="1.20.2"; sha256="19f1gjppzfg21ci6jdxgwv7h14mm89spnj4qr71pwid0a4kiq6gn"; depends=[]; };
+  curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.16.0"; sha256="15d3g7snphvqh8cgry52lqz7v2l6icxznwcplvp73chkr8skqi38"; depends=[affy BiocGenerics]; };
-  etec16s = derive2 { name="etec16s"; version="1.2.0"; sha256="11c1swf7n9g1vnvidmcjpvzj3hgv4dgx6civv3plvamzfcz3jk29"; depends=[Biobase metagenomeSeq]; };
+  curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.0.3"; sha256="19mm3psjmd6rzr34hcz1h5di8smqppnh73jqnqk6mnhgfy1i39ga"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment S4Vectors]; };
-  faahKO = derive2 { name="faahKO"; version="1.14.0"; sha256="1yxrmnbpi706q23n6jc3hngl378w41dkhzcy4gqlbcgwdhbi9yq5"; depends=[xcms]; };
+  davidTiling = derive2 { name="davidTiling"; version="1.18.0"; sha256="1n7axspfh4ph911pj4x2r2dz1xmf6yk9hlnynx7pfmqlgzzcqcvy"; depends=[Biobase GO_db tilingArray]; };
-  fabiaData = derive2 { name="fabiaData"; version="1.12.0"; sha256="1ws09sp07i26ky6pwambw3bvnd2qx2rsvm055hp1j3vrc7qvawwb"; depends=[Biobase]; };
+  derfinderData = derive2 { name="derfinderData"; version="0.112.0"; sha256="0nv2n5417yp8bwdrswbpvni3fg58wl40425f58rdljm4rndk51if"; depends=[]; };
-  facopy_annot = derive2 { name="facopy.annot"; version="0.108.0"; sha256="1wxprfj0420qfbls1jd58raa7ff98fhnna804slagrs8r2ka7kqb"; depends=[]; };
+  diffloopdata = derive2 { name="diffloopdata"; version="1.6.0"; sha256="1ww6raiwr7ymjr4psrgf7q3f59vx32fcc0id9d414z5n8lr4krlr"; depends=[]; };
-  facsDorit = derive2 { name="facsDorit"; version="1.16.0"; sha256="1dla6vv0had55afsv2h8hizkqbng7schadb5w5nbk3va7hzbnjzb"; depends=[prada]; };
+  diggitdata = derive2 { name="diggitdata"; version="1.10.0"; sha256="1w275zk4q5hfmjagdpmfa6xls82zkk34wz795lfnccg1bhvhvpj2"; depends=[Biobase viper]; };
-  ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.12.0"; sha256="16n6kfcq33byrn0xx43bn52c0rbzw3ars9wxg9yd9rfnf23scmbb"; depends=[lumi]; };
+  dressCheck = derive2 { name="dressCheck"; version="0.16.0"; sha256="0x5h4d0hpx1cdlbs2pmylvkhjl46j2vbw8m6za48iv5ksjaxh099"; depends=[Biobase]; };
-  fibroEset = derive2 { name="fibroEset"; version="1.16.0"; sha256="1sr672f6x52rhic69i8cii04cd204ra0lhpxh0dqm78yxkp5mqxc"; depends=[Biobase]; };
+  dsQTL = derive2 { name="dsQTL"; version="0.16.0"; sha256="02ha43xn2z085cyjq57d0n7919lj15bpy40kd0j9zwijyfrldz3s"; depends=[Biobase GGBase SummarizedExperiment]; };
-  fission = derive2 { name="fission"; version="0.108.0"; sha256="0fdsaymwv057sb0bddkaqz320wm6bk1hikwy9js4pc5mbi2r9q1w"; depends=[SummarizedExperiment]; };
+  dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.18.0"; sha256="07ggqj5bz8bna913ryb8wrb9jyr931nlpr5fggil35ms39xqf84f"; depends=[GEOquery marray]; };
-  flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.10.0"; sha256="1z2q9h4arv8a89a5g5j5pzp1k02kmz1h6g0zrvgvz04ys411phv3"; depends=[flowCore]; };
+  ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.18.0"; sha256="0pk6livrn8wan6w44kxvhx2s5yjqf5x9gv5pj0mcldirr5fwkyh6"; depends=[affy ecolicdf]; };
-  flowPloidyData = derive2 { name="flowPloidyData"; version="1.0.0"; sha256="16sgzy2xpjnlm22ca3fvdcfzlfyylsxpjzbv8xaz3lmb7gf8fqix"; depends=[]; };
+  estrogen = derive2 { name="estrogen"; version="1.24.0"; sha256="0rjf95skgpznzwynfzc4mm5rs518x3ilqavz4250yp6g2yk81gdn"; depends=[]; };
-  flowQBData = derive2 { name="flowQBData"; version="1.0.0"; sha256="1lyj5xkc70l3szxspa6gasnx5g4sv6azwzs0b1cvs5y5kngxpns3"; depends=[]; };
+  etec16s = derive2 { name="etec16s"; version="1.6.0"; sha256="0ms9f8925icf7ylrjz4akf147hii44qq9x3ddj0sy971a6ra8m1v"; depends=[Biobase metagenomeSeq]; };
-  flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="2.10.0"; sha256="1pfy1f0flkf22a7ijb2xay6za80y9ny5ja2dy6p4z9w8cqyk8vqp"; depends=[]; };
+  faahKO = derive2 { name="faahKO"; version="1.18.0"; sha256="0a43w7v0sn8z5qyjw0bdkn1jiwzsbxjhpjn9xr5lq1gba4wc15rh"; depends=[xcms]; };
-  frmaExampleData = derive2 { name="frmaExampleData"; version="1.10.0"; sha256="1iznkg12c50lzj0xj1fz92ybqap09fysx0f71g84qpmdh7df5aap"; depends=[]; };
+  fabiaData = derive2 { name="fabiaData"; version="1.16.0"; sha256="0hrn14nwz7xvrd7v0s4b29s22kczj24jklc2yyvij5icjlnr436j"; depends=[Biobase]; };
-  furrowSeg = derive2 { name="furrowSeg"; version="1.2.0"; sha256="0h596g0j6by70ijpli9m2wnxnj7g6gz92vv2dl68s7jnya4n88s9"; depends=[abind dplyr EBImage locfit tiff]; };
+  facopy_annot = derive2 { name="facopy.annot"; version="0.112.0"; sha256="0zd7li5yf6bl9vhpaj0sx8ilv7pqyaavscdrr1lw8y980qiggicm"; depends=[]; };
-  gageData = derive2 { name="gageData"; version="2.12.0"; sha256="1fn4by56fqa9dfyb5a7pjv5f6nsp8gybgp572dyl3jq7bp9imr3j"; depends=[]; };
+  facsDorit = derive2 { name="facsDorit"; version="1.20.0"; sha256="1ppmfkrsdcmd47vakd4kxr5y78387wjpyanlhv9pp741x1jiyf5m"; depends=[prada]; };
-  gaschYHS = derive2 { name="gaschYHS"; version="1.12.0"; sha256="1cwnik2znx13i4p8g3wxyk19r9pd3flxha04b0y4404pvwxa7gac"; depends=[Biobase]; };
+  ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.16.0"; sha256="0jla2cblvkahm1qkszx14dmhsjbk5ywz7sbg14s4x5xf0rv537gk"; depends=[lumi]; };
-  gatingMLData = derive2 { name="gatingMLData"; version="2.14.0"; sha256="0yshv46pj4fjyz49azbrzdqjzppkx4548fsb2k77dvypim6hiiwm"; depends=[]; };
+  fibroEset = derive2 { name="fibroEset"; version="1.20.0"; sha256="1k32m49bhk30rbjryg77jhicjzga970p12wcy5bwzm0qxyj6wvqj"; depends=[Biobase]; };
-  gcspikelite = derive2 { name="gcspikelite"; version="1.12.0"; sha256="0a5gmf667wr1vx2qalz4fvk0c49m6590mvv96ijnrdd9p6k1g450"; depends=[]; };
+  fission = derive2 { name="fission"; version="0.112.0"; sha256="0wgfb85pbs2q4wy59dqpnvvgw63kc9xr0smbjkp482nqv437vg15"; depends=[SummarizedExperiment]; };
-  geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.10.0"; sha256="1a4qqpcid9g1zx5zrpcshlwm8xk1bbppanyfpx077sa0ifpjcxny"; depends=[GenomicFeatures rtracklayer]; };
+  flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.14.0"; sha256="02cziq2jskrz17s05myqj8w1dfd49crnsga9l19xi67n2gl0dl5k"; depends=[flowCore]; };
-  genomationData = derive2 { name="genomationData"; version="1.6.0"; sha256="16dqwb7wx1igx77zdbcskx5m1hs4g4gp2hl56zzm70hcagnlkz8y"; depends=[]; };
+  flowPloidyData = derive2 { name="flowPloidyData"; version="1.4.0"; sha256="09gcy0qv1crz8vfk4s58x054sbhnnfv9mvh1k5vcmlckppimywwq"; depends=[]; };
-  geuvPack = derive2 { name="geuvPack"; version="1.6.0"; sha256="17yr9zm3kk7744sdiyyls4g1n6fhwfq1gafj1713viygk46ff0ps"; depends=[SummarizedExperiment]; };
+  flowQBData = derive2 { name="flowQBData"; version="1.4.0"; sha256="1gvbykmmgl94vmd0g1fccdlshjycll5jvv8vg3h94kx7r3vq8ymi"; depends=[]; };
-  geuvStore2 = derive2 { name="geuvStore2"; version="1.4.0"; sha256="1vrb5a62p6wm9vsf7q9hwjr0n5yv5cqr3z50jd6ymwxb9jy3f4vg"; depends=[BatchJobs GenomicRanges gQTLBase]; };
+  flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="2.14.0"; sha256="10q3nhcbmq75vk1z5zlqsp03d734qmkicsrc25nas2gnbzqmbhwx"; depends=[]; };
-  golubEsets = derive2 { name="golubEsets"; version="1.16.0"; sha256="13lhfhagnc17yva53ax0847mzrlp65bsn8b9haq678kjmd0ry25k"; depends=[Biobase]; };
+  frmaExampleData = derive2 { name="frmaExampleData"; version="1.14.0"; sha256="11h9hwif6hcc3jaipgf5dvjj3j2rcp61phhvxz45r563m494s83z"; depends=[]; };
-  grndata = derive2 { name="grndata"; version="1.6.0"; sha256="0hqli6f9x7amhlwgszhhvrhbazb3ga0r31107n5v5nxfwqmbmgwg"; depends=[]; };
+  furrowSeg = derive2 { name="furrowSeg"; version="1.6.0"; sha256="0ds6x0a5qpp3c8776wbq1zbz17i5ymwxphf9zkxgsnrmjw3cpvvf"; depends=[abind dplyr EBImage locfit tiff]; };
-  gskb = derive2 { name="gskb"; version="1.6.1"; sha256="1az4dw0hwh2ba1v9k5zajgcicxihmr668cvw5qqka14mvh1im30h"; depends=[]; };
+  gageData = derive2 { name="gageData"; version="2.16.0"; sha256="18w5wdaq1j2mndyjfiflawf411zwh1hhjwcxaxrwqnl48p25vg5c"; depends=[]; };
-  h5vcData = derive2 { name="h5vcData"; version="1.108.0"; sha256="13rh4bk47q2nkfgj6sbwbifcidmf34i7s4dhymr8gabplxfcy9mj"; depends=[]; };
+  gaschYHS = derive2 { name="gaschYHS"; version="1.16.0"; sha256="1c9pq8b2mllpsvwyb7w0gwh66kkabrdfadsqd6hagszbyy9sw2v8"; depends=[Biobase]; };
-  hapmap100khind = derive2 { name="hapmap100khind"; version="1.16.0"; sha256="1aaiszx3dhphx62g246w9qngadqj9azkyk7k49igsng329mz8836"; depends=[]; };
+  gatingMLData = derive2 { name="gatingMLData"; version="2.18.0"; sha256="1zlxzy9wzzqfm9brd70kdvki5d9r6lsqc22y0m469ybcxypzvan4"; depends=[]; };
-  hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.16.0"; sha256="1awqvkxcnb3zmi5cds6krs4hc4q90q7kn592ir9a3ypsqsbva4dz"; depends=[]; };
+  gcspikelite = derive2 { name="gcspikelite"; version="1.16.0"; sha256="0p0yxm9i4ynhcvshxywxf6d9lhcr32xp7677ywc6q0ikvr6733zp"; depends=[]; };
-  hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.16.0"; sha256="0cgwy7fqmhg947vfhl4cymj5ssb7avdj330cj7cjil2zilcg3a52"; depends=[]; };
+  geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.14.0"; sha256="063ivzxw02j854ivv5yxdw7a637svadf9n2zwvc3783y4clkfqb6"; depends=[GenomicFeatures rtracklayer]; };
-  hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.16.0"; sha256="11y06piiwgh1v6c489fkjxf8yw9zfc0llrhhnx2syhscfdgw94md"; depends=[]; };
+  genomationData = derive2 { name="genomationData"; version="1.10.0"; sha256="0h7g5x3kyb50qlblz5hc85lfm6n6f5nb68i146way3ggs04sqvla"; depends=[]; };
-  hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.16.0"; sha256="1a0x1prw77d1lddlbdnvqank98xx8gd7a1a8n6c6fwkjynxn32ha"; depends=[]; };
+  geuvPack = derive2 { name="geuvPack"; version="1.10.0"; sha256="0lin7wz9xp7rx34wykpmsd5w7hf0jzzfbmnb4klrvlys1c5r9xr2"; depends=[SummarizedExperiment]; };
-  hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.16.0"; sha256="0rppn6x3f2fpr369mv04pg6pvbmp0j4lnyj84l0vvmqrjyij3vqz"; depends=[]; };
+  geuvStore2 = derive2 { name="geuvStore2"; version="1.8.0"; sha256="1fhq0r3hnv6k4mfrdhjsaylfi96vwv7j74dkaad92li4pizcz04q"; depends=[BatchJobs GenomicRanges gQTLBase]; };
-  harbChIP = derive2 { name="harbChIP"; version="1.12.0"; sha256="01spjp27icgfjwf3cjvz8w5kg6gpqmlkfxdm3j2irn9qvpphw186"; depends=[Biobase Biostrings IRanges]; };
+  golubEsets = derive2 { name="golubEsets"; version="1.20.0"; sha256="0zsylgc1ml9ddnd5r4magmhn7k3glz50aw9aqvf251zjycasncz5"; depends=[Biobase]; };
-  healthyFlowData = derive2 { name="healthyFlowData"; version="1.12.0"; sha256="1dfcc1v22wbzbbsrkjvy8mhv6brxisz5yv1g7zrpswnmchbqxkvd"; depends=[flowCore]; };
+  grndata = derive2 { name="grndata"; version="1.10.0"; sha256="0gqxvngjbxjd40z855vcrc4lqhx9q3b4bgicc371dkglsls4rpgs"; depends=[]; };
-  hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.12.0"; sha256="1ig7myihlmcd39g6qqmbb8fm59vpizfxps4x8pbj676p1578iaw9"; depends=[]; };
+  gskb = derive2 { name="gskb"; version="1.10.0"; sha256="0j36kbyxrrp5h2m7747kprdvhidpcmm14lmqkd1c97ykx5wnzhpr"; depends=[]; };
-  hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.12.0"; sha256="0bnl9z34xn4frqlc9pvnvp4ng1ky0vn5zvjwjv6hc6dki14cgfxp"; depends=[]; };
+  h5vcData = derive2 { name="h5vcData"; version="1.112.0"; sha256="169sg12li7nzd2zv6rj28qc6xfh1l7l9ipybrqa8xyqlcjhpq85f"; depends=[]; };
-  hgu2beta7 = derive2 { name="hgu2beta7"; version="1.14.0"; sha256="115zgss29249az653hw2cd02skmr9fbivsh6zj837m4scnbjwpqz"; depends=[]; };
+  hapmap100khind = derive2 { name="hapmap100khind"; version="1.20.0"; sha256="02pyrd8i1agx31ww4sw6xcwmncibvhqbys072w80rlx3vbjymn3c"; depends=[]; };
-  hmyriB36 = derive2 { name="hmyriB36"; version="1.10.0"; sha256="1whpk1479qhlxmd44bhpsm1xlz2z4pxn918kpwis9mn1inwbmwp0"; depends=[Biobase GGBase]; };
+  hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.20.0"; sha256="0vp1wkbz4l9cxld9iazdi59mkrpvinjz6abf34rl7qzbqnckgygf"; depends=[]; };
-  humanStemCell = derive2 { name="humanStemCell"; version="0.14.0"; sha256="16ad8syrainj8zpp9mhqfxq8xsn9jfdiyf29zjhdb4pnci3rqf7i"; depends=[Biobase hgu133plus2_db]; };
+  hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.20.0"; sha256="1ddxp4adf5nlr96n89hqjv9f0jvm0zknmwpibp757ic6zrk262da"; depends=[]; };
-  iontreeData = derive2 { name="iontreeData"; version="1.10.0"; sha256="187d9mdamp3kb1nvp0ckhza6ws4ga9c4fw35isnc1jsssag1pf7j"; depends=[]; };
+  hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.20.0"; sha256="07cmawlx9wdbyzjjj5wh2h1a32d3ascr9h8rpyg6z1pdriq8cahq"; depends=[]; };
-  kidpack = derive2 { name="kidpack"; version="1.16.0"; sha256="10cab09hdyrndnjgazbvlm3c89qmmj458nbvdd8liiipq1r6f3qv"; depends=[Biobase]; };
+  hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.20.0"; sha256="19wpwai8h0ix4cv17rgz4pz74b0qwby4jc5ry539fb8ls9rzvx1q"; depends=[]; };
-  leeBamViews = derive2 { name="leeBamViews"; version="1.10.0"; sha256="0s9brwvhmmylbs7fjkg4g72kd6kdycy0qmk5hgldz3n266pna293"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges Rsamtools]; };
+  hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.20.0"; sha256="0qjfmjww0rdma3q2nh6ax64zl7adx4n9j0xhc9s19rz5drsdnifl"; depends=[]; };
-  leukemiasEset = derive2 { name="leukemiasEset"; version="1.10.0"; sha256="1n3np631cbdvd809af4s9ngrz2lrvclb313dwz6zhjsp0y0gs6n9"; depends=[Biobase]; };
+  harbChIP = derive2 { name="harbChIP"; version="1.16.0"; sha256="1hzlxha4nlvqw8ml6pylcmb7y986718yg7ff8hn344yfcigpsqkb"; depends=[Biobase Biostrings IRanges]; };
-  lumiBarnes = derive2 { name="lumiBarnes"; version="1.14.0"; sha256="1bagqlq1j6z578zal05xxvvqnfi33rrlgbdq7sj484wyr6jbgxim"; depends=[Biobase lumi]; };
+  healthyFlowData = derive2 { name="healthyFlowData"; version="1.16.0"; sha256="00mjbla9cwj656s174xbfcdmi8gr1xs7vksazrx25m9yn3dw23jb"; depends=[flowCore]; };
-  lungExpression = derive2 { name="lungExpression"; version="0.12.0"; sha256="1lqc2rcsyqzn9799ak61dgrb917f9cfgn7x7ck0d4629sdczm7x7"; depends=[Biobase]; };
+  hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.16.0"; sha256="1ffamwyl5fax5n6x4nc01gx4kazs73jsm239w943jkx2bwy5j2zf"; depends=[]; };
-  lydata = derive2 { name="lydata"; version="1.0.0"; sha256="1c1g17q3ffc4k82ppb1vzi3567wza2q8p06ahd9xnni5hmb5v8jv"; depends=[]; };
+  hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.16.0"; sha256="1blm93a5ll7pn1yhbrl8y6wb1yvfvfnc1zq96kr6id9wxi7bl9hl"; depends=[]; };
-  mAPKLData = derive2 { name="mAPKLData"; version="1.6.0"; sha256="02vx2v0sdzgwzpcgcnszs8q4jdimsis6lyfq6f4pm4b7fccy1as3"; depends=[]; };
+  hgu2beta7 = derive2 { name="hgu2beta7"; version="1.18.0"; sha256="15g6lmq6zfg2vkqliadqrmwivw2mldxlrf52myspmfl83scq973a"; depends=[]; };
-  mammaPrintData = derive2 { name="mammaPrintData"; version="1.10.0"; sha256="1pn0i0bhjs2kyrafafhh8kfgvs0x6nnny8p6zpnivyn4y8hjh5lf"; depends=[]; };
+  hmyriB36 = derive2 { name="hmyriB36"; version="1.14.0"; sha256="0g642694w0qsf27chdlw1g6924pm20kbgza4w57szcdnschabh52"; depends=[Biobase GGBase]; };
-  maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.18.0"; sha256="1ijr4856mdfapcpbmndxhllsvmhih1cra8zm6k9wz1id29b12s2g"; depends=[]; };
+  humanStemCell = derive2 { name="humanStemCell"; version="0.18.0"; sha256="1nff23qa684xzy35d78sympkns7qa82c8cg21bgff3yhlw2ww2ws"; depends=[Biobase hgu133plus2_db]; };
-  metaMSdata = derive2 { name="metaMSdata"; version="1.10.0"; sha256="1f2f7798j1pc74414mvx48w6bbxbsk2rm7l1298sfl1av914yl7a"; depends=[]; };
+  iontreeData = derive2 { name="iontreeData"; version="1.14.0"; sha256="1xj8psicl3yp17i7r6cg9v7rf1wvpz2kck7pbnhwppm7cshqang1"; depends=[]; };
-  miRNATarget = derive2 { name="miRNATarget"; version="1.12.0"; sha256="0k5vgccwfnybbwngbzyz1j98h9jwidv3ypfymz01yjr6cahn5fgv"; depends=[Biobase]; };
+  kidpack = derive2 { name="kidpack"; version="1.20.0"; sha256="007jlvpcwin2q09v4z79mnplz2176crgngana4mfpmx4sp4sh1lx"; depends=[Biobase]; };
-  miRcompData = derive2 { name="miRcompData"; version="1.4.0"; sha256="1gabbbvnmw38snv2zn3i3763n4r38zr9rv854snmy9fhykry0rlq"; depends=[]; };
+  leeBamViews = derive2 { name="leeBamViews"; version="1.14.0"; sha256="1dvrfn3zwi5zl8fjp6kyqankqpzi2dhgzyj1dlp1bijy2y09lg7p"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges Rsamtools]; };
-  minfiData = derive2 { name="minfiData"; version="0.20.0"; sha256="1gg2dg3s92vqnigdg56j91zifv2kl9asiqrrbjmac0pyd0vi555c"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
+  leukemiasEset = derive2 { name="leukemiasEset"; version="1.14.0"; sha256="1pya637a8yww5cm108w5l1ij2js9mx9mpq7d1miwqdqv2mi0liz6"; depends=[Biobase]; };
-  minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.0.0"; sha256="1dmjdfnwia8ka2lya1fin4kj6anjn9szhphnypzhaxxzmli11x2a"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; };
+  lumiBarnes = derive2 { name="lumiBarnes"; version="1.18.0"; sha256="1jxk7abi7lkv8627vn9ydnmx6i4ycgicnl91j6r5gi0q3kffmmkq"; depends=[Biobase lumi]; };
-  minionSummaryData = derive2 { name="minionSummaryData"; version="1.4.0"; sha256="19xlsnfcr9fh7f3nmd0aj6sd03c0bd6ibfbx4rkxsmgfsdfvidzh"; depends=[]; };
+  lungExpression = derive2 { name="lungExpression"; version="0.16.0"; sha256="09v9r6rmfcqprqd1rx53sa4dhjjmg6d9649vlhfhzkyc73yknwmb"; depends=[Biobase]; };
-  mitoODEdata = derive2 { name="mitoODEdata"; version="1.10.0"; sha256="1br92nqvfhc67dsz2b10mzp19rk8bbfb9zaawk6n4pyfn4pdcn4w"; depends=[]; };
+  lydata = derive2 { name="lydata"; version="1.4.0"; sha256="0dflfp14gdjgy7qf3my0vas5zbg77l16li7xgv1924cry11w2dxx"; depends=[]; };
-  mosaicsExample = derive2 { name="mosaicsExample"; version="1.12.0"; sha256="0fgb8ifaygs31ck0xybwr5p85zvkw236lilzcsn9hnsdp2zckkff"; depends=[]; };
+  mAPKLData = derive2 { name="mAPKLData"; version="1.10.0"; sha256="1bfx4imb5yg17n0g1ag436zlks4jcp8ga0xj9wyh9bhx4miwyay4"; depends=[]; };
-  mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.12.0"; sha256="0g2g5kpgpv436k09n43jilzb539faqvp9k41h3xfgw8kqsln10fp"; depends=[]; };
+  mammaPrintData = derive2 { name="mammaPrintData"; version="1.14.0"; sha256="0ks72wnagdvnbilqcsvl5lbhgh64fhbfys0da03336f1z16f5lv9"; depends=[]; };
-  msPurityData = derive2 { name="msPurityData"; version="1.0.0"; sha256="08kz9ihbjxfi64sds5s04ay9g8y1y6fjyaxvd2mvqvzwd3hykzqh"; depends=[]; };
+  maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.22.0"; sha256="0hn20i11vl9x23mx283aki097r1a8rspagac821kmlwghyab1mxq"; depends=[]; };
-  msd16s = derive2 { name="msd16s"; version="0.108.0"; sha256="0gcs6r3z40lc8rsnlnkf01qbnws7bcvi19gx6r2jrlbma14sb22f"; depends=[Biobase metagenomeSeq]; };
+  metaMSdata = derive2 { name="metaMSdata"; version="1.14.0"; sha256="1iygqxymvb98cm325bmdqb34n9b4k1vdzdyzcq8a0gh1dvs2m0iw"; depends=[]; };
-  msdata = derive2 { name="msdata"; version="0.14.0"; sha256="0330ahsx2a5rbqp8kswrq5r85kj5mvv9j5w0bx648isya6j5fzsq"; depends=[]; };
+  methyvimData = derive2 { name="methyvimData"; version="1.0.0"; sha256="1b2mvcawafkr15py8h9j10w5givifi99h9clbdmkgfyixbbh0m94"; depends=[minfi]; };
-  msqc1 = derive2 { name="msqc1"; version="1.2.0"; sha256="03f3jlpl2q9kkb1q2bzxda5yddgpwhhnbb5y209j101yf2z1qv4b"; depends=[lattice]; };
+  miRNATarget = derive2 { name="miRNATarget"; version="1.16.0"; sha256="1ym4wg3g29z7yqmxfxq95yxwc5n048fw3m4bp7dwcq1agnjn5qa7"; depends=[Biobase]; };
-  mtbls2 = derive2 { name="mtbls2"; version="1.4.0"; sha256="02dzwsjagrwgnrsp16h72x3sgl5gms8xnv0vjbfm9m6ynjcfr2y2"; depends=[]; };
+  miRcompData = derive2 { name="miRcompData"; version="1.8.0"; sha256="0h4a3vwzbpzs7rnkn3qgpmfp08a8x8vyy78zb2zl0pgnni7yrdks"; depends=[]; };
-  mvoutData = derive2 { name="mvoutData"; version="1.10.0"; sha256="1hmsk9zlxrqf5znf0rlj1rmsdzdwvr8xnxz6q85ggrr1l9n76g3c"; depends=[affy Biobase lumi]; };
+  microRNAome = derive2 { name="microRNAome"; version="1.0.0"; sha256="13fwzf91hdy4vvxg47xkl78qk4jfgn9whj41gl3pqbgxkp7b3d2n"; depends=[SummarizedExperiment]; };
-  pRolocdata = derive2 { name="pRolocdata"; version="1.12.0"; sha256="09wisspjxaim23w0lhbk5sczghfjsn00f7qc6zp8d7rvp511c56k"; depends=[Biobase MSnbase]; };
+  minfiData = derive2 { name="minfiData"; version="0.24.0"; sha256="0j5f69k9s0mppb62cffj3kscvvmrrwhf6x3xsw3bc6qdk0f3sv67"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; };
-  parathyroidSE = derive2 { name="parathyroidSE"; version="1.12.0"; sha256="1ibf9wia8vn0vmg46rln7lkpd1mm5ahc3cb2kxkzinmsvmqbi2nn"; depends=[SummarizedExperiment]; };
+  minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.4.0"; sha256="12vxglizdyxk4hmj684cwfax4k1rwrz9lmm7khbqzhckzrgiqbny"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; };
-  pasilla = derive2 { name="pasilla"; version="1.2.0"; sha256="0qhmrx4gxprjyd79y3jrx3s8ya6f64jq69lf8ykwgr21h7nsacbl"; depends=[]; };
+  minionSummaryData = derive2 { name="minionSummaryData"; version="1.8.0"; sha256="1dyr99wi3syzrr6vdxfcp7fjnx9p4gd6raj2r7x83r11g2rndpyn"; depends=[]; };
-  pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.12.0"; sha256="0ib1n90k231qckd4kv2wjkw7xxc88gc8h651r06rqalgmldfxg8r"; depends=[]; };
+  mitoODEdata = derive2 { name="mitoODEdata"; version="1.14.0"; sha256="0vgmalrsnm616la3251p1fvcjpfg0wpv5zaxg20ikdc982zfk4sa"; depends=[]; };
-  pcaGoPromoter_Hs_hg19 = derive2 { name="pcaGoPromoter.Hs.hg19"; version="1.10.0"; sha256="1n6dbsq6nbalv4iil2qycwzx84710sz16m2qqq44cgjw2pqmp8ki"; depends=[]; };
+  mosaicsExample = derive2 { name="mosaicsExample"; version="1.16.0"; sha256="0m2az0wv2lmdwa8c465cnfwmnmxmjz33ras984xbcvkh5a8i3gmw"; depends=[]; };
-  pcaGoPromoter_Mm_mm9 = derive2 { name="pcaGoPromoter.Mm.mm9"; version="1.10.0"; sha256="0gr4xc1kah9n9j8q2yq3an780p8l8qgrba06vc8yw28q9s14lcic"; depends=[]; };
+  mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.16.0"; sha256="119z7vxd4yrfgjsd286iswklg0n07gzyckib3ivmm285hxphl79d"; depends=[]; };
-  pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.10.0"; sha256="0xr0qw6z7dm7brp118bdjh53j83pgxgsbfyl2b1s4qdcqp0b0j5i"; depends=[]; };
+  msPurityData = derive2 { name="msPurityData"; version="1.6.0"; sha256="1fpxy34gyngsz7rpr2ng77xb1bylj8s5i500mpbi765cva47lk11"; depends=[]; };
-  pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.12.0"; sha256="0lv60jkg8zqhbz1hnc206zmxpvz961plgj3s2zxl925pzqgw3jdf"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
+  msd16s = derive2 { name="msd16s"; version="0.112.0"; sha256="0ii7c6ynif55izkysw12vjphpkxyx3lvw0akfl18ypbiash3qf6h"; depends=[Biobase metagenomeSeq]; };
-  pepDat = derive2 { name="pepDat"; version="0.108.0"; sha256="01biimjr6j6z1plgsbq9qxk4bzg6mc5v0f5lzwwid8r0n6aq9nfk"; depends=[GenomicRanges]; };
+  msdata = derive2 { name="msdata"; version="0.18.0"; sha256="16wygr7g7vr3jsw9l6fzajid1cxffdww9pik5m4x55chdliq4f25"; depends=[]; };
-  plasFIA = derive2 { name="plasFIA"; version="1.0.0"; sha256="1qqs5n1zbp94p9g87rah3ikdl7gir0m76nyd7ccd232dxkzyl25r"; depends=[proFIA]; };
+  msqc1 = derive2 { name="msqc1"; version="1.6.0"; sha256="0csm35vzk9dp3gc8yfzli1rwanrah42yxsqssjfbvw5zcijs9npm"; depends=[lattice]; };
-  ppiData = derive2 { name="ppiData"; version="0.12.0"; sha256="05cg5hiv314a88wfwnd9milfcin0xmsvvn1zzxqhrj8k7j0smxq9"; depends=[AnnotationDbi graph]; };
+  mtbls2 = derive2 { name="mtbls2"; version="1.8.0"; sha256="1miqc8apjm8pvb9p4man688qnxpg04fqgidy7g9vr654hfc90gja"; depends=[]; };
-  prebsdata = derive2 { name="prebsdata"; version="1.10.0"; sha256="01z22jg4l2l55nrb547xih5ra3rcla4k66j1f210rrsl4r5j89wn"; depends=[]; };
+  mvoutData = derive2 { name="mvoutData"; version="1.14.0"; sha256="0lwzsv8pmyyadnky9m0c3xf5dvm2qs8igkvrfaglsgl1wmymw86a"; depends=[affy Biobase lumi]; };
-  prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.2.0"; sha256="0xg4xwj0m892lsix27bmi23dssl6fx3y93g14mwnlpq430135j96"; depends=[Biobase]; };
+  pRolocdata = derive2 { name="pRolocdata"; version="1.16.0"; sha256="1pmz9vyvl3r8s6mfbd7k7vrz7qk1sv9136aykykvl139rsq7vwnz"; depends=[Biobase MSnbase]; };
-  prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.2.0"; sha256="189iyjfaylck58w0pg3xnrpg6yld304dgprpsvfjhmrc306v1q79"; depends=[Biobase]; };
+  parathyroidSE = derive2 { name="parathyroidSE"; version="1.16.0"; sha256="1jd3fwri705b4i1wwnzx41idc2lvwai6mr7k78666wl6a8275hcn"; depends=[SummarizedExperiment]; };
-  prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.2.0"; sha256="0h9909wl798nalf1x8qc4p0yx6851r4pda24y7vyxvy2jrrah3kq"; depends=[Biobase]; };
+  pasilla = derive2 { name="pasilla"; version="1.6.0"; sha256="0h6ll2csja5vnmylazb1qklz7ybk5hn0nxgkvxhhsmyqk9w7gk6m"; depends=[]; };
-  prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.2.0"; sha256="1ncri2z1sz4kb0a080y4xhf7ah3szp890h6b3xvmc5c6i8h2pysz"; depends=[Biobase]; };
+  pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.16.0"; sha256="1rchf41zh44kzvim8iwvyfvgcfwv587p5p1yipgwf65hyc9sd0fv"; depends=[]; };
-  prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.2.0"; sha256="1kffm7b9rhb6jqsz354almakc2dc5zxczhzg9l2wj59knw6527js"; depends=[Biobase]; };
+  pathprintGEOData = derive2 { name="pathprintGEOData"; version="1.4.0"; sha256="143an0hs22dbglmdc408mfch53zcskbf3a4jfgiajz3dml81flzl"; depends=[]; };
-  pumadata = derive2 { name="pumadata"; version="2.10.0"; sha256="03xx41j8w6lip7rsj0fpnq4jrlmhki63wqnmfh9816gc8g7a5yrh"; depends=[affy Biobase oligo puma]; };
+  pcaGoPromoter_Hs_hg19 = derive2 { name="pcaGoPromoter.Hs.hg19"; version="1.14.0"; sha256="137lj4j0hlz3mkwyf334xr3bpm9j2jg1cd2sw9203kx6hvk92i2z"; depends=[]; };
-  rRDPData = derive2 { name="rRDPData"; version="0.108.0"; sha256="05a42rayxnyzajzabvgzrbj56x7sax96g090r529fd4055582s52"; depends=[rRDP]; };
+  pcaGoPromoter_Mm_mm9 = derive2 { name="pcaGoPromoter.Mm.mm9"; version="1.14.0"; sha256="0kb62bm1a8m88g59v6553qg69rmv0gh0wy4yfkqvn2sgz51zk4r4"; depends=[]; };
-  rcellminerData = derive2 { name="rcellminerData"; version="1.6.0"; sha256="1c95166shc6yflpgl0wfq26mmr5qypiwhidf0vfkgpp0zk30hfd2"; depends=[Biobase]; };
+  pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.14.0"; sha256="0b3cak7nzd6qxr7gnly4246gjdhxyp8h0w5dr1xsgwd9zy1k0psw"; depends=[]; };
-  rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.12.0"; sha256="1gc5vpxjgnjpar757x7i5sk7kqy5jhvd11kad1liwfnz694zgkn8"; depends=[]; };
+  pcxnData = derive2 { name="pcxnData"; version="1.0.0"; sha256="0bkzqac0b2x1f398bflv077dp6nb3ysdf75jcwxpj4nwyhcb7n4f"; depends=[]; };
-  scRNAseq = derive2 { name="scRNAseq"; version="1.0.0"; sha256="0zh3bashqamivddjahaisl92d8ipzahki10wq8sz6myrb57iavlx"; depends=[SummarizedExperiment]; };
+  pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.16.0"; sha256="1ilwm4nx232dll01xqqvagq3qi6qa060v84y20ihxhfwdm46z0ci"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
-  seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.6.0"; sha256="057rs9s9lf6z3z3k1671r0fzk24jl8pmn1zn0a8x2n66d3bpqv4d"; depends=[]; };
+  pepDat = derive2 { name="pepDat"; version="0.112.0"; sha256="15v4yk9cpnz2k16ka4iyc61ji5ck9mlkabgzxalwfnz77ri23mk0"; depends=[GenomicRanges]; };
-  seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.10.0"; sha256="1g350lys9gdrfkwsmb460y9pbjkzcgxwn22xfsl430mblh09ryhm"; depends=[]; };
+  plasFIA = derive2 { name="plasFIA"; version="1.6.0"; sha256="0p3pbjm5ww24ax7h72m38l0rcm01w5a4h8j5rsgynczvfv9jlwjq"; depends=[proFIA]; };
-  seqc = derive2 { name="seqc"; version="1.8.0"; sha256="0fik3w4qs9a01x54im5ckjwywvr1w0jvcmb0x2ym0xba4q4ypvlv"; depends=[]; };
+  ppiData = derive2 { name="ppiData"; version="0.16.0"; sha256="00wjgaihavx99qbcrx1sai2v35pm7kmkvybwdn7ndngvkzqixph5"; depends=[AnnotationDbi graph]; };
-  serumStimulation = derive2 { name="serumStimulation"; version="1.10.0"; sha256="1nl0qi64kihvvp7kkc7y7zl3m938n7mrkw4vrmdshc00j3ydl1k0"; depends=[]; };
+  prebsdata = derive2 { name="prebsdata"; version="1.14.0"; sha256="0rq90wrprj8xy60597dwq8ialjfyfcs8c2fgbskcm7ypba92brmp"; depends=[]; };
-  seventyGeneData = derive2 { name="seventyGeneData"; version="1.10.0"; sha256="1c7zkhv1ijxxy3qiq6rwniay10kqybfqzqysfb94wasp688dixwp"; depends=[]; };
+  prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.6.0"; sha256="0f08mbwsac1nxvf4mwyjnwxd662rdibnzgrn8a0hcl1jmlsrkmg0"; depends=[Biobase]; };
-  shinyMethylData = derive2 { name="shinyMethylData"; version="0.108.0"; sha256="13b3c66ijax8d3cw26wjmx2cjnh06z8dx2ahq0xwic3rj2r8ax61"; depends=[]; };
+  prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.6.0"; sha256="0rk822avnfg3lydq9z995ki9zh7ch8ycg6nslxp8w5c3z4p447mk"; depends=[Biobase]; };
-  simpIntLists = derive2 { name="simpIntLists"; version="1.10.0"; sha256="1k8rck49bpp7h2why7fl6bvhv67krzhc4c0ppily3ah2s9vyxm0a"; depends=[]; };
+  prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.6.0"; sha256="03min0za1paivvi45fl6nyksvhahpxlnqnkisj9312pb1x1gfm54"; depends=[Biobase]; };
-  stemHypoxia = derive2 { name="stemHypoxia"; version="1.10.0"; sha256="1vb3c0k3zrkng95ym4h17y48bcq6xb4izj326w4blajcfyil7kdc"; depends=[]; };
+  prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.6.0"; sha256="01c519rp5jdphc9kqsdqcxsxkg00nhv3s82xlms6s0qdpibscx8m"; depends=[Biobase]; };
-  stjudem = derive2 { name="stjudem"; version="1.14.0"; sha256="09gi8z5ay7hyikqr26npyhim4dzi2hkidnis46ckzfqx9dlar94h"; depends=[]; };
+  prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.6.0"; sha256="10qqsijkjwsw64am50vcjykxghgw51psq608yp9qj85l5d33kkmp"; depends=[Biobase]; };
-  synapterdata = derive2 { name="synapterdata"; version="1.12.0"; sha256="1ynqzxn8a76788chcfq1vw7mrsm7c39qdjzjr42x4lvabr32gd9p"; depends=[synapter]; };
+  pumadata = derive2 { name="pumadata"; version="2.14.0"; sha256="0fsg1qcvfm2s7mpmwqih4pkgwphb4d1k8fah6gwvgc13q519ir2x"; depends=[affy Biobase oligo puma]; };
-  systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.4.0"; sha256="1wbf4488b6zmh72m3zpq5la8qybn6gfr89k7r4572i0awgyxccws"; depends=[BiocGenerics]; };
+  rRDPData = derive2 { name="rRDPData"; version="0.112.0"; sha256="0305x1kkm5wbxcnw7kazrlhdjp91xrbxcvyypn6n0ga09ypk071l"; depends=[rRDP]; };
-  tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.12.0"; sha256="1gbab6zlzc7f2ywsv198yyf9fr2yq2a7y942mjclfg7ji0zf81kw"; depends=[]; };
+  rcellminerData = derive2 { name="rcellminerData"; version="2.0.0"; sha256="03j715sdprmdn1kazcyfy33nymz8kj52hxbv85a8bj3r2r1w6fzm"; depends=[Biobase]; };
-  tinesath1probe = derive2 { name="tinesath1probe"; version="1.12.0"; sha256="06r5vxqqglrgpqyf3837kxl6rb5qcxk61b1g1vyi15kb7rzz0qyp"; depends=[AnnotationDbi]; };
+  restfulSEData = derive2 { name="restfulSEData"; version="1.0.0"; sha256="1v7fvyabb8zjhzwpi1yamp0ch8zm32s820bfr366ir69dib66sa4"; depends=[ExperimentHub SummarizedExperiment]; };
-  tofsimsData = derive2 { name="tofsimsData"; version="1.2.0"; sha256="1786gqxz4vhvjc0cxc2gi5hz9wnvspb3kmmap1nssjnd44cq8ypa"; depends=[]; };
+  rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.16.0"; sha256="06mfgsvzn2s30skrrqm4m76kb1bzp6aa52jfkz94gfam8ps1h1vf"; depends=[]; };
-  tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.12.0"; sha256="0a6g2lnj5m958yagnkn3fl4x0fw6m4gp9xq0jsv6z7ixs2p73xin"; depends=[Biobase]; };
+  sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.2.0"; sha256="0bb4pjiljjixxvz9p59knwxmwr7g0334rs58r0j9w84v1g5prgwv"; depends=[SummarizedExperiment]; };
-  tximportData = derive2 { name="tximportData"; version="1.2.0"; sha256="0618jzzacpl7cipcby5v3rd2rb3x9vqiaf9i1arn83h4znwlnykh"; depends=[]; };
+  scRNAseq = derive2 { name="scRNAseq"; version="1.4.0"; sha256="0jlcgna92mrcjz95r788falyhdpbfa75z2j7dy4jxdr0kd0gjrb6"; depends=[SummarizedExperiment]; };
-  waveTilingData = derive2 { name="waveTilingData"; version="1.10.0"; sha256="1ndqbqisfr2vnfqlmjxvwvkcbs042rqvsqhlpa4pg9l18nfv3zqh"; depends=[]; };
+  seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.10.0"; sha256="01h6xhap2gbwgv3jwrzzciwd697x1vy6gaxmn0jlhvryy9qw9q05"; depends=[]; };
-  yeastCC = derive2 { name="yeastCC"; version="1.14.0"; sha256="1sjy4c6jvhpjpr47l0mpa7mms65jj7c1fhv2dxiqxap5pcxl9s40"; depends=[Biobase]; };
+  seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.14.0"; sha256="1g1lgzsrnf0j5yv2hlgilij1mzbz86pl3p3vd8pbkd61pdf4gxz2"; depends=[]; };
-  yeastExpData = derive2 { name="yeastExpData"; version="0.20.0"; sha256="17bassc4xn9amlsa33rscgbkk50xwrz3i3vlh9ym1184wq14jmp8"; depends=[graph]; };
+  seqc = derive2 { name="seqc"; version="1.12.0"; sha256="0dzfxx75lnrqh2ag9x7351c8xkkfrbvz8fqnigfslgrx01ydxs9y"; depends=[]; };
-  yeastGSData = derive2 { name="yeastGSData"; version="0.12.0"; sha256="0s3458lvcn7xpnwkygl426zqm7h35cl59r0rlp0znnrjvr3f16k3"; depends=[]; };
+  serumStimulation = derive2 { name="serumStimulation"; version="1.14.0"; sha256="10pg5vp1np7n0n7maiizgx2kskm02ikfqvz6pxlz9mglhi1vss1l"; depends=[]; };
-  yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.10.0"; sha256="1085snsd7wsi9sjsqm551i2bnv8pf234vvz6xpw9fz0inr6m5wqq"; depends=[]; };
+  seventyGeneData = derive2 { name="seventyGeneData"; version="1.14.0"; sha256="0643h4wlqmpsygawlh9mh1f889wp79adhlx9s1cqm2b5gggpsrli"; depends=[]; };
-  yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.12.0"; sha256="1rym01mbpn0h70q1c7alhnrqa0c2hb7xmr17qbsh130gqp67c3mq"; depends=[]; };
+  shinyMethylData = derive2 { name="shinyMethylData"; version="0.112.0"; sha256="03y637yxglvy3jxydslwl9ivdc5r8ndph7anbzrmprzp6i481gj4"; depends=[]; };
-  yri1kgv = derive2 { name="yri1kgv"; version="0.16.0"; sha256="0xqlqi665ww3w00g5wv089ydjs74iy07xqzbn19bpdqnkypm83rx"; depends=[Biobase GGBase]; };
+  simpIntLists = derive2 { name="simpIntLists"; version="1.14.0"; sha256="1sdmcbx3yvgwhw8kilx3xa6ip0klyvia00plv1pyfwsl6ldnymvl"; depends=[]; };
-  yriMulti = derive2 { name="yriMulti"; version="0.4.1"; sha256="1s1riipq4ck655m3cds6ffvzr7hg0aa2fhm8gax2b7hwgqr4xmiz"; depends=[dsQTL GenomicRanges geuvPack gQTLBase Homo_sapiens MultiAssayExperiment SummarizedExperiment]; };
+  stemHypoxia = derive2 { name="stemHypoxia"; version="1.14.0"; sha256="0l6nfx1b97grxgq618zvb9ymysrl52r1ahr5ivav3znsnych0gl8"; depends=[]; };
-  zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="0.108.0"; sha256="04pbkfqb6l8qgxl1263jhhd7gm8hz908c47q5s1f1nvc3403dlbp"; depends=[]; };
+  stjudem = derive2 { name="stjudem"; version="1.18.0"; sha256="1bxc1qzs6jcdfh87f6mzn9d1ih790i461267czzhsm9niha4q604"; depends=[]; };
+  synapterdata = derive2 { name="synapterdata"; version="1.16.0"; sha256="1r1ldji1wnfsk772c00cwmx13xms90v9diqrqjilxbam9p30wr98"; depends=[synapter]; };
+  systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.6.0"; sha256="1j2kwczhqz26rf0ra34am32lbwp7rk13in1saf0kxd88m8qljksa"; depends=[BiocGenerics]; };
+  tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.16.0"; sha256="0a71k64y6yw4pxnbay478d27pfshnw96rslphvpkqaf48903b2fy"; depends=[]; };
+  tinesath1probe = derive2 { name="tinesath1probe"; version="1.16.0"; sha256="088hrs6b65rxvw4d153fbk83w9p88mv5xfkwj4xziygibqy7lmpi"; depends=[AnnotationDbi]; };
+  tofsimsData = derive2 { name="tofsimsData"; version="1.6.0"; sha256="030x882c38apa3n4vs9qj5a83sa8m183ifym60zqyms432k4xc70"; depends=[]; };
+  topdownrdata = derive2 { name="topdownrdata"; version="1.0.0"; sha256="157vv89cidpcnliksfy4inds52j176724xydk0smykc6ny9wmas7"; depends=[topdownr]; };
+  tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.16.0"; sha256="17v27ir0a38y1h73nr8nib18bj8s2l6rbz5y15ly7pp2wkp5w0cm"; depends=[Biobase]; };
+  tximportData = derive2 { name="tximportData"; version="1.6.0"; sha256="0l86z9nryhqzdqh6vn5krlkdhanhybr86z75l7lwg07k34nm8qcb"; depends=[]; };
+  vulcandata = derive2 { name="vulcandata"; version="1.0.0"; sha256="0nka5sw9gp7nv09zdi4cq10k7k400padadq80xzxfzss91nwz23l"; depends=[]; };
+  waveTilingData = derive2 { name="waveTilingData"; version="1.14.0"; sha256="0ndskrk78c8596gymcffdr5mbxi1x5046w8m83baa3vrd8csn282"; depends=[]; };
+  yeastCC = derive2 { name="yeastCC"; version="1.18.0"; sha256="1qm0knin24bwpjsi4g9s6vdfydrjqvv19a2kjx1k51l2j46g0rni"; depends=[Biobase]; };
+  yeastExpData = derive2 { name="yeastExpData"; version="0.24.0"; sha256="19v901c67kp8kfb6i2hv8mczf9kcy0pvr8y4w5brjp4lj6djcvid"; depends=[graph]; };
+  yeastGSData = derive2 { name="yeastGSData"; version="0.16.0"; sha256="19c4293lzrw8d8az1bzfw5ipxyrzgh8kxi3km82nqzfcnxlq0b89"; depends=[]; };
+  yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.14.0"; sha256="0f7amg423236scpzxqi2jy2w4ppa0zqwn9m4mqjksk2klig9nx3g"; depends=[]; };
+  yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.16.0"; sha256="05pi5s91wivlc1nfnsnzgx8kdibi7a3k5dgqh0a0x98wiqynin41"; depends=[]; };
+  yri1kgv = derive2 { name="yri1kgv"; version="0.20.0"; sha256="0hl53rl5yhmd3yxdjd2q0wj8mlcgdckiln0dym83b1249lnhwp9z"; depends=[Biobase GGBase]; };
+  yriMulti = derive2 { name="yriMulti"; version="0.8.0"; sha256="0b48phy3jndplmi9yxbd0i5bn7jqf6fpb7qlqxvzibm1q50l9yx3"; depends=[dsQTL GenomeInfoDb GenomicFiles GenomicRanges geuvPack gQTLBase Homo_sapiens MultiAssayExperiment SummarizedExperiment VariantAnnotation]; };
+  zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="0.112.0"; sha256="1zpn3d4xmzq18hji93g5br1snw0d9wmvpjmbxnmiaqwr8mrx5zbn"; depends=[]; };
 }

pkgs/development/r-modules/default.nix

@@ -42,16 +42,17 @@ let
   # from the name, version, sha256, and optional per-package arguments above
   #
   deriveBioc = mkDerive {
-    mkHomepage = {name, rVersion}: "https://bioconductor.org/packages/${rVersion}/bioc/html/${name}.html";
+    mkHomepage = {name, biocVersion}: "https://bioconductor.org/packages/${biocVersion}/bioc/html/${name}.html";
-    mkUrls = {name, version, rVersion}: [ "mirror://bioc/${rVersion}/bioc/src/contrib/${name}_${version}.tar.gz" ];
+    mkUrls = {name, version, biocVersion}: [ "mirror://bioc/${biocVersion}/bioc/src/contrib/${name}_${version}.tar.gz"
+                                             "mirror://bioc/${biocVersion}/bioc/src/contrib/Archive/${name}_${version}.tar.gz" ];
   };
   deriveBiocAnn = mkDerive {
-    mkHomepage = {name, rVersion}: "http://www.bioconductor.org/packages/${name}.html";
+    mkHomepage = {name, biocVersion}: "http://www.bioconductor.org/packages/${name}.html";
-    mkUrls = {name, version, rVersion}: [ "mirror://bioc/${rVersion}/data/annotation/src/contrib/${name}_${version}.tar.gz" ];
+    mkUrls = {name, version, biocVersion}: [ "mirror://bioc/${biocVersion}/data/annotation/src/contrib/${name}_${version}.tar.gz" ];
   };
   deriveBiocExp = mkDerive {
-    mkHomepage = {name, rVersion}: "http://www.bioconductor.org/packages/${name}.html";
+    mkHomepage = {name, biocVersion}: "http://www.bioconductor.org/packages/${name}.html";
-    mkUrls = {name, version, rVersion}: [ "mirror://bioc/${rVersion}/data/experiment/src/contrib/${name}_${version}.tar.gz" ];
+    mkUrls = {name, version, biocVersion}: [ "mirror://bioc/${biocVersion}/data/experiment/src/contrib/${name}_${version}.tar.gz" ];
   };
   deriveCran = mkDerive {
     mkHomepage = {name, snapshot}: "http://mran.revolutionanalytics.com/snapshot/${snapshot}/web/packages/${name}/";
@@ -230,6 +231,7 @@ let
   packagesWithNativeBuildInputs = {
     abn = [ pkgs.gsl_1 ];
     adimpro = [ pkgs.imagemagick ];
+    animation = [ pkgs.which ];
     audio = [ pkgs.portaudio ];
     BayesSAE = [ pkgs.gsl_1 ];
     BayesVarSel = [ pkgs.gsl_1 ];
@@ -313,7 +315,7 @@ let
     RGtk2 = [ pkgs.gtk2.dev ];
     rhdf5 = [ pkgs.zlib ];
     Rhpc = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.openmpi pkgs.pcre.dev ];
-    Rhtslib = [ pkgs.zlib.dev ];
+    Rhtslib = [ pkgs.zlib.dev pkgs.automake pkgs.autoconf ];
     RJaCGH = [ pkgs.zlib.dev ];
     rjags = [ pkgs.jags ];
     rJava = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.pcre.dev pkgs.jdk pkgs.libzip ];
@@ -350,7 +352,6 @@ let
     simplexreg = [ pkgs.gsl_1 ];
     SOD = [ pkgs.opencl-headers ];
     spate = [ pkgs.fftw.dev ];
-    sprint = [ pkgs.openmpi ];
     ssanv = [ pkgs.proj ];
     stsm = [ pkgs.gsl_1 ];
     stringi = [ pkgs.icu.dev ];
@@ -384,7 +385,6 @@ let
     affyio = [ pkgs.zlib.dev ];
     VariantAnnotation = [ pkgs.zlib.dev ];
     snpStats = [ pkgs.zlib.dev ];
-    gputools = [ pkgs.pcre.dev pkgs.lzma.dev pkgs.zlib.dev pkgs.bzip2.dev pkgs.icu.dev ];
   };
 
   packagesWithBuildInputs = {
@@ -398,7 +398,6 @@ let
     RPushbullet = [ pkgs.which ];
     qtpaint = [ pkgs.cmake ];
     qtbase = [ pkgs.cmake pkgs.perl ];
-    gmatrix = [ pkgs.cudatoolkit pkgs.which ];
     RCurl = [ pkgs.curl.dev ];
     R2SWF = [ pkgs.pkgconfig ];
     rggobi = [ pkgs.pkgconfig ];
@@ -427,12 +426,10 @@ let
     tesseract = [ pkgs.pkgconfig ];
     Cairo = [ pkgs.pkgconfig ];
     Rsymphony = [ pkgs.pkgconfig pkgs.doxygen pkgs.graphviz pkgs.subversion ];
-    qtutils = [ pkgs.qt4 ];
     tcltk2 = [ pkgs.tcl pkgs.tk ];
     tikzDevice = [ pkgs.which pkgs.texlive.combined.scheme-medium ];
     rPython = [ pkgs.which ];
     gridGraphics = [ pkgs.which ];
-    gputools = [ pkgs.which pkgs.cudatoolkit ];
     adimpro = [ pkgs.which pkgs.xorg.xdpyinfo ];
     PET = [ pkgs.which pkgs.xorg.xdpyinfo pkgs.imagemagick ];
     dti = [ pkgs.which pkgs.xorg.xdpyinfo pkgs.imagemagick ];
@@ -498,7 +495,6 @@ let
     "EnQuireR"
     "eVenn"
     "exactLoglinTest"
-    "FAiR"
     "fat2Lpoly"
     "fbati"
     "FD"
@@ -519,7 +515,6 @@ let
     "geoR"
     "geoRglm"
     "georob"
-    "GeoXp"
     "GGEBiplotGUI"
     "gnm"
     "GPCSIV"
@@ -535,7 +530,6 @@ let
     "HH"
     "HiveR"
     "HomoPolymer"
-    "iBUGS"
     "ic50"
     "iDynoR"
     "in2extRemes"
@@ -591,10 +585,8 @@ let
     "prefmod"
     "PrevMap"
     "ProbForecastGOP"
-    "QCAGUI"
     "qtbase"
     "qtpaint"
-    "qtutils"
     "R2STATS"
     "r4ss"
     "RandomFields"
@@ -700,16 +692,11 @@ let
 
   packagesToSkipCheck = [
     "Rmpi"     # tries to run MPI processes
-    "gmatrix"  # requires CUDA runtime
-    "gputools" # requires CUDA runtime
-    "sprint"   # tries to run MPI processes
     "pbdMPI"   # tries to run MPI processes
   ];
 
   # Packages which cannot be installed due to lack of dependencies or other reasons.
   brokenPackages = [
-    "gputools"                        # depends on non-free cudatoolkit-8.0.61
-    "gmatrix"                         # depends on non-free cudatoolkit-8.0.61
   ];
 
   otherOverrides = old: new: {
@@ -840,15 +827,6 @@ let
       patches = [ ./patches/spMC.patch ];
     });
 
-    BayesLogit = old.BayesLogit.overrideDerivation (attrs: {
-      patches = [ ./patches/BayesLogit.patch ];
-      buildInputs = (attrs.buildInputs or []) ++ [ pkgs.openblasCompat ];
-    });
-
-    BayesBridge = old.BayesBridge.overrideDerivation (attrs: {
-      patches = [ ./patches/BayesBridge.patch ];
-    });
-
     openssl = old.openssl.overrideDerivation (attrs: {
       PKGCONFIG_CFLAGS = "-I${pkgs.openssl.dev}/include";
       PKGCONFIG_LIBS = "-Wl,-rpath,${pkgs.openssl.out}/lib -L${pkgs.openssl.out}/lib -lssl -lcrypto";

pkgs/development/r-modules/generate-r-packages.R

@@ -3,12 +3,12 @@ library(data.table)
 library(parallel)
 cl <- makeCluster(10)
 
-rVersion <- paste(R.Version()$major, strsplit(R.Version()$minor, ".", fixed=TRUE)[[1]][1], sep=".")
+biocVersion <- 3.6
 snapshotDate <- Sys.Date()-1
 
-mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", rVersion, "/bioc/src/contrib/")
+mirrorUrls <- list( bioc=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/bioc/src/contrib/")
-                  , "bioc-annotation"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", rVersion, "/data/annotation/src/contrib/")
+                  , "bioc-annotation"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/data/annotation/src/contrib/")
-                  , "bioc-experiment"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", rVersion, "/data/experiment/src/contrib/")
+                  , "bioc-experiment"=paste0("http://bioconductor.statistik.tu-dortmund.de/packages/", biocVersion, "/data/experiment/src/contrib/")
                   , cran=paste0("http://mran.revolutionanalytics.com/snapshot/", snapshotDate, "/src/contrib/")
                   )
 
@@ -81,7 +81,7 @@ cat("{ self, derive }:\n")
 cat("let derive2 = derive ")
 if (mirrorType == "cran") { cat("{ snapshot = \"", paste(snapshotDate), "\"; }", sep="")
 } else if (mirrorType == "irkernel") { cat("{}")
-} else { cat("{ rVersion = \"", rVersion, "\"; }", sep="") }
+} else { cat("{ biocVersion = \"", biocVersion, "\"; }", sep="") }
 cat(";\n")
 cat("in with self; {\n")
 cat(paste(nix, collapse="\n"), "\n", sep="")

pkgs/development/r-modules/patches/BayesBridge.patch

@@ -1,9 +0,0 @@
-diff -ru -x '*~' BayesBridge_orig/src/Makevars BayesBridge/src/Makevars
---- BayesBridge_orig/src/Makevars	2014-07-19 05:08:55.000000000 +0900
-+++ BayesBridge/src/Makevars	2014-10-25 18:35:01.398539305 +0900
-@@ -9,4 +9,4 @@
- # PKG_CPPFLAGS = -DUSE_R -DDISABLE_FIO -I../inst/include/ -DDISABLE_SINGLE -DNTHROW
- PKG_CPPFLAGS = -DUSE_R -DDISABLE_FIO -DDISABLE_SINGLE -DNTHROW
- # PKG_CPPFLAGS = -DUSE_R -DDISABLE_SINGLE -DNTHROW -Wall -pedantic -Wshadow  -ansi -Wsequence-point
--PKG_LIBS = $(BLAS_LIBS) $(FLIBS) $(LAPACK_LIBS) 
-+PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)

pkgs/development/r-modules/patches/BayesLogit.patch

@@ -1,12 +0,0 @@
-diff -ru -x '*~' BayesLogit_orig/src/Makevars BayesLogit/src/Makevars
---- BayesLogit_orig/src/Makevars	2014-04-24 23:31:13.000000000 +0900
-+++ BayesLogit/src/Makevars	2014-10-25 18:33:32.398572641 +0900
-@@ -6,7 +6,7 @@
- ## W/OUT Dynamic Stuff
- OBJECTS = Matrix.o MatrixFrame.o RRNG.o RNG.o FSF_nmix.o LogitWrapper.o \
- 	PolyaGamma.o PolyaGammaAlt.o PolyaGammaSP.o InvertY.o
--PKG_LIBS = $(BLAS_LIBS) $(FLIBS) $(LAPACK_LIBS) 
-+PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
- # PKG_CPPFLAGS = -DUSE_R -DNDEBUG -DDISABLE_SINGLE -DNTHROW -Wall -pedantic -Wextra
- PKG_CPPFLAGS = -DUSE_R -DNDEBUG -DDISABLE_SINGLE -DNTHROW 
- 

pkgs/development/tools/devpi-client/default.nix

@@ -29,8 +29,9 @@ pythonPackages.buildPythonApplication rec {
     # setuptools do not get propagated into the tox call (cannot import setuptools)
     rm testing/test_test.py
 
-    # test tries to connect to upstream pypi
+    # test_pypi_index_attributes tries to connect to upstream pypi
-    py.test -k 'not test_pypi_index_attributes' testing
+    # test_download_release_error is fixed in the next release
+    py.test -k 'not test_pypi_index_attributes and not test_download_release_error' testing
   '';
 
   LC_ALL = "en_US.UTF-8";

pkgs/development/tools/devpi-server/default.nix

@@ -3,17 +3,24 @@
 pythonPackages.buildPythonApplication rec {
   name = "${pname}-${version}";
   pname = "devpi-server";
-  version = "4.3.1";
+  version = "4.4.0";
 
   src = pythonPackages.fetchPypi {
     inherit pname version;
-    sha256 = "0x6ks2sbpknznxaqlh0gf5hcvhkmgixixq2zs91wgfqxk4vi4s6n";
+    sha256 = "0y77kcnk26pfid8vsw07v2k61x9sdl6wbmxg5qxnz3vd7703xpkl";
   };
 
   propagatedBuildInputs = with pythonPackages;
     [ devpi-common execnet itsdangerous pluggy waitress pyramid passlib ];
-  checkInputs = with pythonPackages; [ nginx webtest pytest beautifulsoup4 pytest-timeout pytest-catchlog mock pyyaml ];
+  checkInputs = with pythonPackages; [ nginx webtest pytest beautifulsoup4 pytest-timeout mock pyyaml ];
+  preCheck = ''
+    # These tests pass with pytest 3.3.2 but not with pytest 3.4.0.
+    sed -i 's/test_basic/noop/' test_devpi_server/test_log.py
+    sed -i 's/test_new/noop/' test_devpi_server/test_log.py
+    sed -i 's/test_thread_run_try_again/noop/' test_devpi_server/test_replica.py
+  '';
   checkPhase = ''
+    runHook preCheck
     cd test_devpi_server/
     PATH=$PATH:$out/bin pytest --slow -rfsxX
   '';

pkgs/development/tools/flock/default.nix

@@ -0,0 +1,24 @@
+{ stdenv, lib, fetchFromGitHub, autoreconfHook, ronn }:
+
+stdenv.mkDerivation rec {
+  pname = "flock";
+  name = "${pname}-${version}";
+  version = "0.2.3";
+
+  src = fetchFromGitHub {
+    owner = "discoteq";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "1vdq22zhdfi7wwndsd6s7fwmz02fsn0x04d7asq4hslk7bjxjjzn";
+  };
+
+  nativeBuildInputs = [ autoreconfHook ];
+  buildInputs = [ ronn ];
+
+  meta = with lib; {
+    description = "Cross-platform version of flock(1)";
+    maintainers = [ maintainers.matthewbauer ];
+    platforms = platforms.all;
+    license = licenses.isc;
+  };
+}

pkgs/development/tools/haskell/multi-ghc-travis/default.nix

@@ -6,10 +6,10 @@ mkDerivation {
   pname = "make-travis-yml";
   version = "0";
   src = fetchFromGitHub {
-    owner = "hvr";
+    owner = "haskell-CI";
-    repo = "multi-ghc-travis";
+    repo = "haskell-ci";
-    rev = "612a29439ba61b01efb98ea6d36b7ffd987dc5a0";
+    rev = "36b2ee58b9fd160d606608832625b2b6c32aec43";
-    sha256 = "0q416rzzwipbnvslhwmm43w38dwma3lks12fghb0svcwj5lzgxsf";
+    sha256 = "16g99jh5bszvfvb7mmyhl95mkf1l3ydyax8d9py91hi3m8r0c2x0";
   };
   isLibrary = true;
   isExecutable = true;
@@ -22,7 +22,7 @@ mkDerivation {
     base bytestring Diff directory filepath tasty tasty-golden
     transformers
   ];
-  homepage = "https://github.com/hvr/multi-ghc-travis";
+  homepage = "https://github.com/haskell-CI/haskell-ci";
   description = "Script generator for Travis-CI";
   license = stdenv.lib.licenses.bsd3;
 }

pkgs/development/tools/misc/strace/default.nix

@@ -13,6 +13,8 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ libunwind ]; # support -k
 
+  configureFlags = stdenv.lib.optional stdenv.hostPlatform.isAarch64 "--enable-mpers=check";
+
   meta = with stdenv.lib; {
     homepage = http://strace.sourceforge.net/;
     description = "A system call tracer for Linux";

pkgs/development/tools/profiling/systemtap/default.nix

@@ -1,5 +1,5 @@
 { fetchgit, pkgconfig, gettext, runCommand, makeWrapper
-, elfutils, kernel, gnumake, python2, pythonPackages
+, elfutils, kernel, gnumake, python2, python2Packages
 }:
 
 let
@@ -17,7 +17,7 @@ let
     name = "systemtap-${version}";
     src = fetchgit { inherit url rev sha256; };
   nativeBuildInputs = [ pkgconfig ];
-    buildInputs = [ elfutils gettext python2 pythonPackages.setuptools ];
+    buildInputs = [ elfutils gettext python2 python2Packages.setuptools ];
     # FIXME: Workaround for bug in kbuild, where quoted -I"/foo" flags would get mangled in out-of-tree kbuild dirs
     postPatch = ''
       substituteInPlace buildrun.cxx --replace \
@@ -39,6 +39,8 @@ let
     done
   '';
 
+  pypkgs = with python2Packages; makePythonPath [ pyparsing ];
+
 in runCommand "systemtap-${kernel.version}-${version}" {
   inherit stapBuild kernelBuildDir;
   buildInputs = [ makeWrapper ];
@@ -54,8 +56,10 @@ in runCommand "systemtap-${kernel.version}-${version}" {
   for bin in $stapBuild/bin/*; do # hello emacs */
     ln -s $bin $out/bin
   done
-  rm $out/bin/stap
+  rm $out/bin/stap $out/bin/dtrace
   makeWrapper $stapBuild/bin/stap $out/bin/stap \
     --add-flags "-r $kernelBuildDir" \
     --prefix PATH : ${lib.makeBinPath [ stdenv.cc.cc stdenv.cc.bintools elfutils gnumake ]}
+  makeWrapper $stapBuild/bin/dtrace $out/bin/dtrace \
+    --prefix PYTHONPATH : ${pypkgs}
 ''

pkgs/development/tools/rust/racerd/default.nix

@@ -4,17 +4,17 @@ with rustPlatform;
 
 buildRustPackage rec {
   name = "racerd-${version}";
-  version = "2017-02-17";
+  version = "2017-09-15";
   src = fetchFromGitHub {
     owner = "jwilm";
     repo = "racerd";
-    rev = "e3f3ff010fce2c67195750d9a6a669ffb3c2ac5f";
+    rev = "29cd4c6fd2a9301e49931c2e065b2e10c4b587e4";
-    sha256 = "125pmbkjnjh83xwikcwfbb8g150nldz7wh0ly1gv9kl1b521dydk";
+    sha256 = "0knz881mjhd8q2i8ydggaa7lfpiqy11wjmnv5p80n1d8zca6yb7z";
   };
 
   doCheck = false;
 
-  cargoSha256 = "1h7hm7vkk1grah6pn5ydfi5pzc2kd48lh2kxim5jlvrxhd2dingg";
+  cargoSha256 = "00gxj98zdkbrc5cxd4w5hk7iwv9a1kwa535hhspx9xd02r4d8rzl";
 
   buildInputs = [ makeWrapper ];
 

pkgs/development/tools/rust/rustup/default.nix

@@ -4,15 +4,15 @@
 
 rustPlatform.buildRustPackage rec {
   name = "rustup-${version}";
-  version = "2017-10-29";
+  version = "1.11.0";
 
-  cargoSha256 = "1xwxv8y9xjgdmm92ldrn9m9fml2zb5h7qqm7dhw63j6psb3ajqrw";
+  cargoSha256 = "1r9mnj3x9sn16hi1r09gl5q0cnsa2g6kbjw2g115858i2a9k6hkr";
 
   src = fetchFromGitHub {
     owner = "rust-lang-nursery";
     repo = "rustup.rs";
-    rev = "13c8092507bf646f3ef6a621fe2c5a68212e800f";
+    rev = version;
-    sha256 = "1qd01rjk9qpfzgqs35f5nxrcf00kmf76zwmgj3yzdig9zymjwndg";
+    sha256 = "05rbgkz4fk6c1x6bpmpx108bg2qcrf6vv3yfz378s7bmr3l319iz";
   };
 
   nativeBuildInputs = [ pkgconfig ];
@@ -35,23 +35,23 @@ rustPlatform.buildRustPackage rec {
   postInstall = ''
     pushd $out/bin
     mv rustup-init rustup
-    for link in cargo rustc rustdoc rust-gdb rust-lldb; do
+    for link in cargo rustc rustdoc rust-gdb rust-lldb rls rustfmt cargo-fmt; do
       ln -s rustup $link
     done
     popd
 
     # tries to create .rustup
     export HOME=$(mktemp -d)
-    mkdir -p "$out/share/"{bash-completion/completions,fish/completions,zsh/site-functions}
+    mkdir -p "$out/share/"{bash-completion/completions,fish/vendor_completions.d,zsh/site-functions}
     $out/bin/rustup completions bash > "$out/share/bash-completion/completions/rustup"
-    $out/bin/rustup completions fish > "$out/share/fish/completions/rustup.fish"
+    $out/bin/rustup completions fish > "$out/share/fish/vendor_completions.d/rustup.fish"
     $out/bin/rustup completions zsh >  "$out/share/zsh/site-functions/_rustup"
   '';
 
   meta = with stdenv.lib; {
     description = "The Rust toolchain installer";
     homepage = https://www.rustup.rs/;
-    license = licenses.mit;
+    license = with licenses; [ asl20 /* or */ mit ];
     maintainers = [ maintainers.mic92 ];
   };
 }

pkgs/development/web/nodejs/v6.nix

@@ -5,7 +5,7 @@ let
 in
   buildNodejs {
     inherit enableNpm;
-    version = "6.12.3";
+    version = "6.13.0";
-    sha256 = "1p6w7ngp95lc3ksyklp1mwyq1f02vz62r1h60g1ri00pl8pnfn0s";
+    sha256 = "012dpfqxsrmd3xc4dmq0mik1kab4czf56s8wm2jvm7xjqvi6y5mp";
     patches = lib.optionals stdenv.isDarwin [ ./no-xcode.patch ];
   }

pkgs/games/openra/default.nix

@@ -5,7 +5,7 @@
 
 stdenv.mkDerivation rec {
   name = "openra-${version}";
-  version = "20171014";
+  version = "20180218";
 
   meta = with stdenv.lib; {
     description = "Real Time Strategy game engine recreating the C&C titles";
@@ -19,7 +19,7 @@ stdenv.mkDerivation rec {
     owner = "OpenRA";
     repo = "OpenRA";
     rev = "release-${version}";
-    sha256 = "0nlwpmiwhjs3qc2lxwnrh4p874v5y6mf4avi6bqgr1wvzc43n8wr";
+    sha256 = "1853p2q88602s3zf22wg1h2qx2x661n20bcjjbfmj0h2d4p9dmaf";
 
     extraPostFetch = ''
       sed -i 's,curl,curl --insecure,g' $out/thirdparty/{fetch-thirdparty-deps,noget}.sh

pkgs/misc/cups/drivers/mfcl2720dwcupswrapper/default.nix

@@ -0,0 +1,47 @@
+{ stdenv, fetchurl, dpkg, makeWrapper, coreutils, gnugrep, gnused, perl, mfcl2720dwlpr }:
+
+stdenv.mkDerivation rec {
+  name = "mfcl2720dwcupswrapper-${version}";
+  version = "3.2.0-1";
+
+  src = fetchurl {
+    url = "http://download.brother.com/welcome/dlf101802/${name}.i386.deb";
+    sha256 = "6d131926ce22c51b1854d2b91e426cc7ecbf5d6dabd698ef51a417090e35c598";
+  };
+
+  nativeBuildInputs = [ dpkg makeWrapper ];
+
+  phases = [ "installPhase" ];
+
+  installPhase = ''
+    dpkg-deb -x $src $out
+
+    basedir=${mfcl2720dwlpr}/opt/brother/Printers/MFCL2720DW
+    dir=$out/opt/brother/Printers/MFCL2720DW
+
+    substituteInPlace $dir/cupswrapper/brother_lpdwrapper_MFCL2720DW \
+      --replace /usr/bin/perl ${perl}/bin/perl \
+      --replace "basedir =~" "basedir = \"$basedir\"; #" \
+      --replace "PRINTER =~" "PRINTER = \"MFCL2720DW\"; #"
+
+    substituteInPlace $dir/cupswrapper/paperconfigml1 \
+      --replace /usr/bin/perl ${perl}/bin/perl
+
+    wrapProgram $dir/cupswrapper/brother_lpdwrapper_MFCL2720DW \
+      --prefix PATH : ${stdenv.lib.makeBinPath [ coreutils gnugrep gnused ]}
+
+    mkdir -p $out/lib/cups/filter
+    mkdir -p $out/share/cups/model
+
+    ln $dir/cupswrapper/brother_lpdwrapper_MFCL2720DW $out/lib/cups/filter
+    ln $dir/cupswrapper/brother-MFCL2720DW-cups-en.ppd $out/share/cups/model
+  '';
+
+  meta = {
+    description = "Brother MFC-L2720DW CUPS wrapper driver";
+    homepage = http://www.brother.com/;
+    license = stdenv.lib.licenses.gpl2;
+    platforms = [ "x86_64-linux" "i686-linux" ];
+    maintainers = [ stdenv.lib.maintainers.xeji ];
+  };
+}

pkgs/misc/cups/drivers/mfcl2720dwlpr/default.nix

@@ -0,0 +1,45 @@
+{ pkgs, stdenv, fetchurl, dpkg, makeWrapper, coreutils, ghostscript, gnugrep, gnused, which, perl }:
+
+stdenv.mkDerivation rec {
+  name = "mfcl2720dwlpr-${version}";
+  version = "3.2.0-1";
+
+  src = fetchurl {
+    url = "http://download.brother.com/welcome/dlf101801/${name}.i386.deb";
+    sha256 = "088217e9ad118ec1e7f3d3f8f60f3bd839fe2c7d7c1136b249e9ac648dc742af";
+  };
+
+  nativeBuildInputs = [ dpkg makeWrapper ];
+
+  phases = [ "installPhase" ];
+
+  installPhase = ''
+    dpkg-deb -x $src $out
+
+    dir=$out/opt/brother/Printers/MFCL2720DW
+
+    substituteInPlace $dir/lpd/filter_MFCL2720DW \
+      --replace /usr/bin/perl ${perl}/bin/perl \
+      --replace "BR_PRT_PATH =~" "BR_PRT_PATH = \"$dir\"; #" \
+      --replace "PRINTER =~" "PRINTER = \"MFCL2720DW\"; #"
+
+    wrapProgram $dir/lpd/filter_MFCL2720DW \
+      --prefix PATH : ${stdenv.lib.makeBinPath [
+        coreutils ghostscript gnugrep gnused which
+      ]}
+
+    # need to use i686 glibc here, these are 32bit proprietary binaries
+    interpreter=${pkgs.pkgsi686Linux.glibc}/lib/ld-linux.so.2
+    patchelf --set-interpreter "$interpreter" $dir/inf/braddprinter
+    patchelf --set-interpreter "$interpreter" $dir/lpd/brprintconflsr3
+    patchelf --set-interpreter "$interpreter" $dir/lpd/rawtobr3
+  '';
+
+  meta = {
+    description = "Brother MFC-L2720DW lpr driver";
+    homepage = http://www.brother.com/;
+    license = stdenv.lib.licenses.unfree;
+    platforms = [ "x86_64-linux" "i686-linux" ];
+    maintainers = [ stdenv.lib.maintainers.xeji ];
+  };
+}

pkgs/os-specific/linux/bcc/default.nix

@@ -1,5 +1,7 @@
 { stdenv, fetchFromGitHub, fetchpatch, makeWrapper, cmake, llvmPackages, kernel
-, flex, bison, elfutils, python, pythonPackages, luajit, netperf, iperf, libelf }:
+, flex, bison, elfutils, python, pythonPackages, luajit, netperf, iperf, libelf
+, systemtap
+}:
 
 stdenv.mkDerivation rec {
   version = "0.5.0";
@@ -15,6 +17,7 @@ stdenv.mkDerivation rec {
   buildInputs = [
     llvmPackages.llvm llvmPackages.clang-unwrapped kernel
     elfutils python pythonPackages.netaddr luajit netperf iperf
+    systemtap.stapBuild
   ];
 
   patches = [
@@ -29,7 +32,12 @@ stdenv.mkDerivation rec {
     # libelf is incompatible with elfutils-libelf
     ++ stdenv.lib.filter (x: x != libelf) kernel.moduleBuildDependencies;
 
-  cmakeFlags="-DBCC_KERNEL_MODULES_DIR=${kernel.dev}/lib/modules";
+  cmakeFlags =
+    [ "-DBCC_KERNEL_MODULES_DIR=${kernel.dev}/lib/modules"
+      "-DREVISION=${version}"
+      "-DENABLE_USDT=ON"
+      "-DENABLE_CPP_API=ON"
+    ];
 
   postInstall = ''
     mkdir -p $out/bin $out/share

pkgs/os-specific/linux/kernel/perf.nix

@@ -16,7 +16,14 @@ stdenv.mkDerivation {
 
   preConfigure = ''
     cd tools/perf
-    sed -i s,/usr/include/elfutils,$elfutils/include/elfutils, Makefile
+
+    substituteInPlace Makefile \
+      --replace /usr/include/elfutils $elfutils/include/elfutils
+
+    for x in util/build-id.c util/dso.c; do
+      substituteInPlace $x --replace /usr/lib/debug /run/current-system/sw/lib/debug
+    done
+
     [ -f bash_completion ] && sed -i 's,^have perf,_have perf,' bash_completion
     export makeFlags="DESTDIR=$out WERROR=0 $makeFlags"
     export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -DTIPDIR=\"$out/share/doc/perf-tip\""
@@ -42,6 +49,7 @@ stdenv.mkDerivation {
       "-Wno-error=unused-const-variable" "-Wno-error=misleading-indentation"
     ];
 
+  separateDebugInfo = true;
   installFlags = "install install-man ASCIIDOC8=1";
 
   preFixup = ''

pkgs/servers/dns/powerdns/default.nix

@@ -1,27 +1,36 @@
-{ stdenv, fetchurl, pkgconfig,
+{ stdenv, fetchurl, pkgconfig
-  boost, libyamlcpp, libsodium, sqlite, protobuf,
+, boost, libyamlcpp, libsodium, sqlite, protobuf, botan2
-  mysql57, postgresql, lua, openldap, geoip, curl
+, mysql57, postgresql, lua, openldap, geoip, curl, opendbx, unixODBC
 }:
 
 stdenv.mkDerivation rec {
   name = "powerdns-${version}";
-  version = "4.0.5";
+  version = "4.1.1";
 
   src = fetchurl {
     url = "http://downloads.powerdns.com/releases/pdns-${version}.tar.bz2";
-    sha256 = "097ci4s2c63gl0bil8yh87dsy0sk3fds4w8cpyjh5kns6zazmj2v";
+    sha256 = "1fh4zgj0gxgcnnhnih8k6fbw18hb9brkkrfpx3mj8b4a3hr8ilq8";
   };
 
   nativeBuildInputs = [ pkgconfig ];
-  buildInputs = [ boost mysql57.connector-c postgresql lua openldap sqlite protobuf geoip libyamlcpp libsodium curl ];
+  buildInputs = [
+    boost mysql57.connector-c postgresql lua openldap sqlite protobuf geoip
+    libyamlcpp libsodium curl opendbx unixODBC botan2
+  ];
+
+  patches = [
+    # checksum type not found, maybe a dependency is to old?
+    ./skip-sha384-test.patch
+  ];
 
   # nix destroy with-modules arguments, when using configureFlags
   preConfigure = ''
     configureFlagsArray=(
-      "--with-modules=bind gmysql geoip gpgsql gsqlite3 ldap lua pipe random remote"
+      "--with-modules=bind gmysql geoip godbc gpgsql gsqlite3 ldap lua mydns opendbx pipe random remote"
       --with-sqlite3
       --with-socketdir=/var/lib/powerdns
       --enable-libsodium
+      --enable-botan
       --enable-tools
       --disable-dependency-tracking
       --disable-silent-rules
@@ -29,7 +38,8 @@ stdenv.mkDerivation rec {
       --enable-unit-tests
     )
   '';
-  checkPhase = "make check";
+
+  doCheck = true;
 
   meta = with stdenv.lib; {
     description = "Authoritative DNS server";

pkgs/servers/dns/powerdns/skip-sha384-test.patch

@@ -0,0 +1,14 @@
+--- pdns-4.1.1.org/pdns/test-signers.cc	2018-02-17 11:43:15.953228279 +0000
++++ pdns-4.1.1/pdns/test-signers.cc	2018-02-17 11:44:21.089516393 +0000
+@@ -212,11 +212,6 @@
+       BOOST_CHECK_EQUAL(ds2.getZoneRepresentation(), signer.dsSHA256);
+     }
+ 
+-    auto ds4 = makeDSFromDNSKey(name, drc, DNSSECKeeper::SHA384);
+-    if (!signer.dsSHA384.empty()) {
+-      BOOST_CHECK_EQUAL(ds4.getZoneRepresentation(), signer.dsSHA384);
+-    }
+-
+     auto signature = dcke->sign(message);
+     BOOST_CHECK(dcke->verify(message, signature));
+ 

pkgs/servers/gotty/default.nix

@@ -19,7 +19,7 @@ buildGoPackage rec {
   meta = with stdenv.lib; {
     description = "Share your terminal as a web application";
     homepage = https://github.com/yudai/gotty;
-    maintainers = with maintainers; [ matthiasbeyer ];
+    maintainers = with maintainers; [ ];
     license = licenses.mit;
   };
 }

pkgs/servers/sql/mariadb/default.nix

@@ -15,11 +15,11 @@ mariadb = everything // {
 };
 
 common = rec { # attributes common to both builds
-  version = "10.2.12";
+  version = "10.2.13";
 
   src = fetchurl {
     url    = "https://downloads.mariadb.org/f/mariadb-${version}/source/mariadb-${version}.tar.gz";
-    sha256 = "1v21sc1y5qndwdbr921da1s009bkn6pshwcgw47w7aygp9zjvcia";
+    sha256 = "0ly7dxc7rk327liya4kalgsw8irlxl0pl8gq0agdl18a63cpwbi7";
     name   = "mariadb-${version}.tar.gz";
   };
 

pkgs/tools/backup/ddar/default.nix

@@ -0,0 +1,39 @@
+{ lib, buildPythonApplication, fetchFromGitHub, python, protobuf, roundup }:
+
+buildPythonApplication rec {
+  pname = "ddar";
+  version = "1.0";
+
+  src = fetchFromGitHub {
+    owner = "basak";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "158jdy5261k9yw540g48hddy5zyqrr81ir9fjlcy4jnrwfkg7ynm";
+  };
+
+  prePatch = ''
+    substituteInPlace t/local-functions \
+      --replace 'PATH="$ddar_src:$PATH"' 'PATH="$out/bin:$PATH"'
+    # Test requires additional software and compilation of some C programs
+    substituteInPlace t/basic-test.sh \
+      --replace it_stores_and_extracts_corpus0 dont_test
+  '';
+
+  preBuild = ''
+    make -f Makefile.prep synctus/ddar_pb2.py
+  '';
+
+  propagatedBuildInputs = [ protobuf ];
+
+  checkInputs = [ roundup ];
+
+  checkPhase = ''
+    roundup t/basic-test.sh
+  '';
+
+  meta = with lib; {
+    description = "Unix de-duplicating archiver";
+    license = licenses.gpl3;
+    homepage = src.meta.homepage;
+  };
+}

pkgs/tools/cd-dvd/cue2pops/default.nix

@@ -0,0 +1,30 @@
+{ stdenv, fetchFromGitHub }:
+
+with stdenv.lib;
+stdenv.mkDerivation rec {
+  name = "cue2pops-${version}";
+  version = "git-2018-01-04";
+
+  src = fetchFromGitHub {
+    owner = "makefu";
+    repo = "cue2pops-linux";
+    rev = "541863adf23fdecde92eba5899f8d58586ca4551";
+    sha256 = "05w84726g3k33rz0wwb9v77g7xh4cnhy9sxlpilf775nli9bynrk";
+  };
+
+  dontConfigure = true;
+
+  makeFlags = ["CC=cc"];
+
+  installPhase = ''
+    install --directory --mode=755 $out/bin
+    install --mode=755 cue2pops $out/bin
+  '';
+
+  meta = {
+    description = "Convert CUE to ISO suitable to POPStarter";
+    homepage = https://github.com/makefu/cue2pops-linux;
+    maintainers = with maintainers; [ AndersonTorres ];
+    platforms = platforms.all;
+  };
+}

pkgs/tools/filesystems/ceph/0001-kv-RocksDBStore-API-break-additional.patch

@@ -0,0 +1,58 @@
+Seulement dans ceph: ceph.old
+diff -ur ceph.old/src/kv/RocksDBStore.cc ceph/src/kv/RocksDBStore.cc
+--- ceph.old/src/kv/RocksDBStore.cc	1980-01-02 00:00:00.000000000 +0100
++++ ceph/src/kv/RocksDBStore.cc	2018-01-24 14:08:35.017553372 +0100
+@@ -505,7 +505,7 @@
+   // considering performance overhead, default is disabled
+   if (g_conf->rocksdb_perf) {
+     rocksdb::SetPerfLevel(rocksdb::PerfLevel::kEnableTimeExceptForMutex);
+-    rocksdb::perf_context.Reset();
++    rocksdb::get_perf_context()->Reset();
+   }
+ 
+   RocksDBTransactionImpl * _t =
+@@ -532,13 +532,13 @@
+     utime_t write_wal_time;
+     utime_t write_pre_and_post_process_time;
+     write_wal_time.set_from_double(
+-	static_cast<double>(rocksdb::perf_context.write_wal_time)/1000000000);
++	static_cast<double>(rocksdb::get_perf_context()->write_wal_time)/1000000000);
+     write_memtable_time.set_from_double(
+-	static_cast<double>(rocksdb::perf_context.write_memtable_time)/1000000000);
++	static_cast<double>(rocksdb::get_perf_context()->write_memtable_time)/1000000000);
+     write_delay_time.set_from_double(
+-	static_cast<double>(rocksdb::perf_context.write_delay_time)/1000000000);
++	static_cast<double>(rocksdb::get_perf_context()->write_delay_time)/1000000000);
+     write_pre_and_post_process_time.set_from_double(
+-	static_cast<double>(rocksdb::perf_context.write_pre_and_post_process_time)/1000000000);
++	static_cast<double>(rocksdb::get_perf_context()->write_pre_and_post_process_time)/1000000000);
+     logger->tinc(l_rocksdb_write_memtable_time, write_memtable_time);
+     logger->tinc(l_rocksdb_write_delay_time, write_delay_time);
+     logger->tinc(l_rocksdb_write_wal_time, write_wal_time);
+@@ -558,7 +558,7 @@
+   // considering performance overhead, default is disabled
+   if (g_conf->rocksdb_perf) {
+     rocksdb::SetPerfLevel(rocksdb::PerfLevel::kEnableTimeExceptForMutex);
+-    rocksdb::perf_context.Reset();
++    rocksdb::get_perf_context()->Reset();
+   }
+ 
+   RocksDBTransactionImpl * _t =
+@@ -586,13 +586,13 @@
+     utime_t write_wal_time;
+     utime_t write_pre_and_post_process_time;
+     write_wal_time.set_from_double(
+-	static_cast<double>(rocksdb::perf_context.write_wal_time)/1000000000);
++	static_cast<double>(rocksdb::get_perf_context()->write_wal_time)/1000000000);
+     write_memtable_time.set_from_double(
+-	static_cast<double>(rocksdb::perf_context.write_memtable_time)/1000000000);
++	static_cast<double>(rocksdb::get_perf_context()->write_memtable_time)/1000000000);
+     write_delay_time.set_from_double(
+-	static_cast<double>(rocksdb::perf_context.write_delay_time)/1000000000);
++	static_cast<double>(rocksdb::get_perf_context()->write_delay_time)/1000000000);
+     write_pre_and_post_process_time.set_from_double(
+-	static_cast<double>(rocksdb::perf_context.write_pre_and_post_process_time)/1000000000);
++	static_cast<double>(rocksdb::get_perf_context()->write_pre_and_post_process_time)/1000000000);
+     logger->tinc(l_rocksdb_write_memtable_time, write_memtable_time);
+     logger->tinc(l_rocksdb_write_delay_time, write_delay_time);
+     logger->tinc(l_rocksdb_write_wal_time, write_wal_time);

pkgs/tools/filesystems/ceph/default.nix

@@ -1,20 +1,12 @@
 { callPackage, fetchgit, fetchpatch, ... } @ args:
 
 callPackage ./generic.nix (args // rec {
-  version = "9.2.0";
+  version = "12.2.2";
 
   src = fetchgit {
     url = "https://github.com/ceph/ceph.git";
     rev = "refs/tags/v${version}";
-    sha256 = "0a2v3bgkrbkzardcw7ymlhhyjlwi08qmcm7g34y2sjsxk9bd78an";
+    sha256 = "01anqxyffa8l2lzgyb0dj6fjicfjdx2cq9y1klh24x69gxwkdh00";
   };
 
-  patches = [
-    ./fix-pythonpath.patch
-    # For building with xfsprogs 4.5.0:
-    (fetchpatch {
-      url = "https://github.com/ceph/ceph/commit/602425abd5cef741fc1b5d4d1dd70c68e153fc8d.patch";
-      sha256 = "1iyf0ml2n50ki800vjich8lvzmcdviwqwkbs6cdj0vqv2nc5ii1g";
-    })
-  ];
 })

pkgs/tools/filesystems/ceph/generic.nix

@@ -1,12 +1,17 @@
-{ stdenv, ensureNewerSourcesHook, autoconf, automake, makeWrapper, pkgconfig
+{ stdenv, ensureNewerSourcesHook, cmake, pkgconfig
-, libtool, which, git
+, which, git
-, boost, python2Packages, libxml2, zlib
+, boost, python2Packages
+, libxml2, zlib
+, openldap, lttngUst
+, babeltrace, gperf
+, cunit, snappy
+, rocksdb
 
 # Optional Dependencies
-, snappy ? null, leveldb ? null, yasm ? null, fcgi ? null, expat ? null
+, yasm ? null, fcgi ? null, expat ? null
 , curl ? null, fuse ? null, libibverbs ? null, librdmacm ? null
 , libedit ? null, libatomic_ops ? null, kinetic-cpp-client ? null
-, rocksdb ? null, libs3 ? null
+, libs3 ? null
 
 # Mallocs
 , jemalloc ? null, gperftools ? null
@@ -30,21 +35,11 @@ assert cryptopp != null || (nss != null && nspr != null);
 with stdenv;
 with stdenv.lib;
 let
-  inherit (python2Packages) python;
-  mkFlag = trueStr: falseStr: cond: name: val: "--"
-    + (if cond then trueStr else falseStr)
-    + name
-    + optionalString (val != null && cond != false) "=${val}";
-  mkEnable = mkFlag "enable-" "disable-";
-  mkWith = mkFlag "with-" "without-";
-  mkOther = mkFlag "" "" true;
 
   shouldUsePkg = pkg_: let pkg = (builtins.tryEval pkg_).value;
     in if lib.any (x: x == system) (pkg.meta.platforms or [])
       then pkg else null;
 
-  optSnappy = shouldUsePkg snappy;
-  optLeveldb = shouldUsePkg leveldb;
   optYasm = shouldUsePkg yasm;
   optFcgi = shouldUsePkg fcgi;
   optExpat = shouldUsePkg expat;
@@ -55,7 +50,6 @@ let
   optLibedit = shouldUsePkg libedit;
   optLibatomic_ops = shouldUsePkg libatomic_ops;
   optKinetic-cpp-client = shouldUsePkg kinetic-cpp-client;
-  optRocksdb = shouldUsePkg rocksdb;
   optLibs3 = if versionAtLeast version "10.0.0" then null else shouldUsePkg libs3;
 
   optJemalloc = shouldUsePkg jemalloc;
@@ -69,13 +63,11 @@ let
   optLibxfs = shouldUsePkg libxfs;
   optZfs = shouldUsePkg zfs;
 
-  hasServer = optSnappy != null && optLeveldb != null;
+  hasMon = true;
-  hasMon = hasServer;
+  hasMds = true;
-  hasMds = hasServer;
+  hasOsd = true;
-  hasOsd = hasServer;
   hasRadosgw = optFcgi != null && optExpat != null && optCurl != null && optLibedit != null;
 
-  hasRocksdb = versionAtLeast version "9.0.0" && optRocksdb != null;
 
   # TODO: Reenable when kinetic support is fixed
   #hasKinetic = versionAtLeast version "9.0.0" && optKinetic-cpp-client != null;
@@ -93,192 +85,80 @@ let
     none = [ ];
   };
 
-  wrapArgs = "--set PYTHONPATH \"$(toPythonPath $lib)\""
+  ceph-python-env = python2Packages.python.withPackages (ps: [ 
-    + " --prefix PYTHONPATH : \"$(toPythonPath ${python2Packages.flask})\""
+	ps.sphinx
-    + " --set PATH \"$out/bin\"";
+	ps.flask
+	ps.argparse
+	ps.cython 
+	ps.setuptools
+	ps.pip
+	]);
+
 in
 stdenv.mkDerivation {
   name="ceph-${version}";
 
   inherit src;
 
-  patches = patches ++ [
+  patches = [ 
-    ./0001-Makefile-env-Don-t-force-sbin.patch
+ #	 ./ceph-patch-cmake-path.patch
+    ./0001-kv-RocksDBStore-API-break-additional.patch   
   ];
 
   nativeBuildInputs = [
-    autoconf automake makeWrapper pkgconfig libtool which git
+    cmake
+    pkgconfig which git
     (ensureNewerSourcesHook { year = "1980"; })
-  ]
+  ];
-    ++ optionals (versionAtLeast version "9.0.2") [
+  
-      python2Packages.setuptools python2Packages.argparse
-    ];
   buildInputs = buildInputs ++ cryptoLibsMap.${cryptoStr} ++ [
-    boost python libxml2 optYasm optLibatomic_ops optLibs3 malloc python2Packages.flask zlib
+    boost ceph-python-env libxml2 optYasm optLibatomic_ops optLibs3 
-  ] ++ optionals (versionAtLeast version "9.0.0") [
+    malloc zlib openldap lttngUst babeltrace gperf cunit
-    python2Packages.sphinx # Used for docs
+    snappy rocksdb
   ] ++ optionals stdenv.isLinux [
     linuxHeaders libuuid udev keyutils optLibaio optLibxfs optZfs
-  ] ++ optionals hasServer [
-    optSnappy optLeveldb
   ] ++ optionals hasRadosgw [
     optFcgi optExpat optCurl optFuse optLibedit
-  ] ++ optionals hasRocksdb [
-    optRocksdb
   ] ++ optionals hasKinetic [
     optKinetic-cpp-client
   ];
-
+  
-  postPatch = ''
+  preConfigure =''
-    # Fix zfs pkgconfig detection
+    # rip off submodule that interfer with system libs
-    sed -i 's,\[zfs\],\[libzfs\],g' configure.ac
+	rm -rf src/boost
-
+	rm -rf src/rocksdb
-    # Fix seagate kinetic linking
+	
-    sed -i 's,libcrypto.a,-lcrypto,g' src/os/Makefile.am
+	# require LD_LIBRARY_PATH for cython to find internal dep
-  '' + optionalString (versionAtLeast version "9.0.0") ''
+	export LD_LIBRARY_PATH="$PWD/build/lib:$LD_LIBRARY_PATH"
-    # Fix gmock
+	
-    patchShebangs src/gmock
+	# requires setuptools due to embedded in-cmake setup.py usage
+	export PYTHONPATH="${python2Packages.setuptools}/lib/python2.7/site-packages/:$PYTHONPATH"
   '';
 
-  preConfigure = ''
+  cmakeFlags = [ 
-    # Ceph expects the arch command to be usable during configure
+    "-DENABLE_GIT_VERSION=OFF"
-    # for detecting the assembly type
+    "-DWITH_SYSTEM_BOOST=ON"
-    mkdir -p mybin
+    "-DWITH_SYSTEM_ROCKSDB=ON"
-    echo "#${stdenv.shell} -e" >> mybin/arch
+    "-DWITH_LEVELDB=OFF"
-    echo "uname -m" >> mybin/arch
+    
-    chmod +x mybin/arch
+    # enforce shared lib
-    PATH="$PATH:$(pwd)/mybin"
+    "-DBUILD_SHARED_LIBS=ON"
-
+    
-    ./autogen.sh
+    # disable cephfs, cmake build broken for now
-
+    "-DWITH_CEPHFS=OFF"
-    # Fix the python site-packages install directory
+    "-DWITH_LIBCEPHFS=OFF"
-    sed -i "s,\(PYTHON\(\|_EXEC\)_PREFIX=\).*,\1'$lib',g" configure
-
-    # Fix the PYTHONPATH for installing ceph-detect-init to $out
-    mkdir -p "$(toPythonPath $out)"
-    export PYTHONPATH="$(toPythonPath $out):$PYTHONPATH"
-  '';
-
-  configureFlags = [
-    (mkOther                               "exec_prefix"         "\${out}")
-    (mkOther                               "sysconfdir"          "/etc")
-    (mkOther                               "localstatedir"       "/var")
-    (mkOther                               "libdir"              "\${lib}/lib")
-    (mkOther                               "includedir"          "\${lib}/include")
-    (mkWith   true                         "rbd"                  null)
-    (mkWith   true                         "cephfs"               null)
-    (mkWith   hasRadosgw                   "radosgw"              null)
-    (mkWith   true                         "radosstriper"         null)
-    (mkWith   hasServer                    "mon"                  null)
-    (mkWith   hasServer                    "osd"                  null)
-    (mkWith   hasServer                    "mds"                  null)
-    (mkEnable true                         "client"               null)
-    (mkEnable hasServer                    "server"               null)
-    (mkWith   (cryptoStr == "cryptopp")    "cryptopp"             null)
-    (mkWith   (cryptoStr == "nss")         "nss"                  null)
-    (mkEnable false                        "root-make-check"      null)
-    (mkWith   false                        "profiler"             null)
-    (mkWith   false                        "debug"                null)
-    (mkEnable false                        "coverage"             null)
-    (mkWith   (optFuse != null)            "fuse"                 null)
-    (mkWith   (malloc == optJemalloc)      "jemalloc"             null)
-    (mkWith   (malloc == optGperftools)    "tcmalloc"             null)
-    (mkEnable false                        "pgrefdebugging"       null)
-    (mkEnable false                        "cephfs-java"          null)
-    (mkWith   (optLibatomic_ops != null)   "libatomic-ops"        null)
-    (mkWith   true                         "ocf"                  null)
-    (mkWith   hasKinetic                   "kinetic"              null)
-    (mkWith   hasRocksdb                   "librocksdb"           null)
-    (mkWith   false                        "librocksdb-static"    null)
-  ] ++ optional stdenv.isLinux [
-    (mkWith   (optLibaio != null)          "libaio"               null)
-    (mkWith   (optLibxfs != null)          "libxfs"               null)
-    (mkWith   (optZfs != null)             "libzfs"               null)
-  ] ++ optional (versionAtLeast version "0.94.3") [
-    (mkWith   false                        "tcmalloc-minimal"     null)
-  ] ++ optional (versionAtLeast version "9.0.1") [
-    (mkWith   false                        "valgrind"             null)
-  ] ++ optional (versionAtLeast version "9.0.2") [
-    (mkWith   true                         "man-pages"            null)
-    (mkWith   true                         "systemd-libexec-dir"  "\${out}/libexec")
-  ] ++ optional (versionOlder version "9.1.0") [
-    (mkWith   (optLibs3 != null)           "system-libs3"         null)
-    (mkWith   true                         "rest-bench"           null)
-  ] ++ optional (versionAtLeast version "9.1.0") [
-    (mkWith   true                         "rgw-user"             "rgw")
-    (mkWith   true                         "rgw-group"            "rgw")
-    (mkWith   true                         "systemd-unit-dir"     "\${out}/etc/systemd/system")
-    (mkWith   false                        "selinux"              null)  # TODO: Implement
   ];
 
-  preBuild = optionalString (versionAtLeast version "9.0.0") ''
-    (cd src/gmock; make -j $NIX_BUILD_CORES)
-  '';
-
-  installFlags = [ "sysconfdir=\${out}/etc" ];
-
-  outputs = [ "out" "lib" ];
-
-  postInstall = ''
-    # Wrap all of the python scripts
-    wrapProgram $out/bin/ceph ${wrapArgs}
-    wrapProgram $out/bin/ceph-brag ${wrapArgs}
-    wrapProgram $out/bin/ceph-rest-api ${wrapArgs}
-    wrapProgram $out/sbin/ceph-create-keys ${wrapArgs}
-    wrapProgram $out/sbin/ceph-disk ${wrapArgs}
-
-    # Bring in lib as a run-time dependency
-    mkdir -p $out/nix-support
-    echo "$lib" > $out/nix-support/propagated-build-inputs
-
-    # Fix the python library loading
-    find $lib/lib -name \*.pyc -or -name \*.pyd -exec rm {} \;
-    for PY in $(find $lib/lib -name \*.py); do
-      LIBS="$(sed -n "s/.*find_library('\([^)]*\)').*/\1/p" "$PY")"
-
-      # Delete any calls to find_library
-      sed -i '/find_library/d' "$PY"
-
-      # Fix each find_library call
-      for LIB in $LIBS; do
-        REALLIB="$lib/lib/lib$LIB.so"
-        sed -i "s,\(lib$LIB = CDLL(\).*,\1'$REALLIB'),g" "$PY"
-      done
-
-      # Reapply compilation optimizations
-      NAME=$(basename -s .py "$PY")
-      rm -f "$PY"{c,o}
-      pushd "$(dirname $PY)"
-      python -c "import $NAME"
-      python -O -c "import $NAME"
-      popd
-      test -f "$PY"c
-      test -f "$PY"o
-    done
-
-    # Fix .la file link dependencies
-    find "$lib/lib" -name \*.la | xargs sed -i \
-      -e 's,-lboost_[a-z]*,-L${boost.out}/lib \0,g' \
-  '' + optionalString (cryptoStr == "cryptopp") ''
-      -e 's,-lcryptopp,-L${optCryptopp}/lib \0,g' \
-  '' + optionalString (cryptoStr == "nss") ''
-      -e 's,-l\(plds4\|plc4\|nspr4\),-L${optNss}/lib \0,g' \
-      -e 's,-l\(ssl3\|smime3\|nss3\|nssutil3\),-L${optNspr}/lib \0,g' \
-  '' + ''
-
-  '';
-
   enableParallelBuilding = true;
+  
+  outputs = [ "dev" "lib" "out" "doc" ];
 
   meta = {
     homepage = http://ceph.com/;
     description = "Distributed storage system";
     license = licenses.lgpl21;
-    maintainers = with maintainers; [ ak wkennington ];
+    maintainers = with maintainers; [ adev ak wkennington ];
     platforms = platforms.unix;
-    # Broken because of https://lwn.net/Vulnerabilities/709844/
-    # and our version is quite out of date.
-    broken = true;
   };
 
   passthru.version = version;

pkgs/tools/filesystems/mergerfs/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "mergerfs-${version}";
-  version = "2.23.0";
+  version = "2.23.1";
 
   # not using fetchFromGitHub because of changelog being built with git log
   src = fetchgit {
     url = "https://github.com/trapexit/mergerfs";
     rev = "refs/tags/${version}";
-    sha256 = "0k4nn0f4c355q7hnni7iia8qi9m0khvyd04hx1hmlrnf0zsi9mfw";
+    sha256 = "0kbw64fkp3pjc7qm3y1q0ja20v3lhxi0nsq6gd19rq3m7ch9hcgl";
     deepClone = true;
     leaveDotGit = true;
   };

pkgs/tools/filesystems/snapraid/default.nix

@@ -2,15 +2,17 @@
 
 stdenv.mkDerivation rec {
   name = "snapraid-${version}";
-  version = "11.1";
+  version = "11.2";
 
   src = fetchFromGitHub {
     owner = "amadvance";
     repo = "snapraid";
     rev = "v${version}";
-    sha256 = "1vgyiagn6qvyyz4jkf8pzlg0w9apb6mzza97a9x03p82fav2afx0";
+    sha256 = "01z8fl3x2j5bnm0rybj7hhch18is6dkwqc43yzwc6418spr4imsd";
   };
 
+  VERSION = version;
+
   doCheck = true;
 
   nativeBuildInputs = [ autoreconfHook ];

pkgs/tools/misc/otfcc/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "otfcc-${version}";
-  version = "0.8.6";
+  version = "0.9.6";
 
   src = fetchFromGitHub {
     owner = "caryll";
     repo = "otfcc";
     rev = "v${version}";
-    sha256 = "0yy9awffxxs0cdlf0akld73ndnwmylxvplac4k6j7641m3vk1g8p";
+    sha256 = "1rnjfqqyc6d9nhlh8if9k37wk94mcwz4wf3k239v6idg48nrk10b";
   };
 
   nativeBuildInputs = [ premake5 ninja ];

pkgs/tools/misc/roundup/default.nix

@@ -0,0 +1,38 @@
+{ stdenv, fetchFromGitHub, ronn, shocco }:
+
+stdenv.mkDerivation rec {
+  name = "roundup-${version}";
+  version = "0.0.6";
+
+  src = fetchFromGitHub {
+    owner = "bmizerany";
+    repo = "roundup";
+    rev = "v${version}";
+    sha256 = "0nxaqmbv8mdvq9wcaqxk6k5mr31i68jzxf1wxa6pp7xp4prwdc9z";
+  };
+
+  prePatch = ''
+    # Don't change $PATH
+    substituteInPlace configure --replace PATH= NIRVANA=
+    # There are only man pages in sections 1 and 5 \
+    substituteInPlace Makefile --replace "{1..9}" "1 5"
+  '';
+
+  nativeBuildInputs = [ ronn shocco ];
+
+  installTargets = [ "install" "install-man" ];
+
+  preInstall = ''
+    for i in 1 5; do
+      mkdir -p $out/share/man/man$i
+    done
+  '';
+
+  meta = with stdenv.lib; {
+    description = "A unit testing tool for running test plans which are written in any POSIX shell";
+    homepage = http://bmizerany.github.io/roundup/;
+    license = licenses.mit;
+    maintainers = with maintainers; [ dotlambda ];
+    platforms = platforms.all;
+  };
+}

pkgs/tools/misc/smenu/default.nix

@@ -1,14 +1,14 @@
 { stdenv, fetchFromGitHub, ncurses }:
 
 stdenv.mkDerivation rec {
-  version = "v0.9.10";
+  version = "v0.9.11";
   name = "smenu-${version}";
 
   src = fetchFromGitHub {
     owner  = "p-gen";
     repo   = "smenu";
     rev    = version;
-    sha256 = "1fh0s5zhx8ps760w0yxjv682lhahz1j63i0gdwvvr5vnvyx6c40d";
+    sha256 = "1va5gsxniin02casgdrqxvpzccm0vwjiql60qrsvncrq6nm6bz0d";
   };
 
   buildInputs = [ ncurses ];

pkgs/tools/misc/vdirsyncer/default.nix

@@ -6,12 +6,12 @@ let
   pythonPackages = python3Packages;
 in
 pythonPackages.buildPythonApplication rec {
-  version = "0.16.3";
+  version = "0.16.4";
   name = "vdirsyncer-${version}";
 
   src = fetchurl {
     url = "mirror://pypi/v/vdirsyncer/${name}.tar.gz";
-    sha256 = "0dpwbfi97ksijqng191659m8k0v215y8ld95w8gb126m4m96qpzw";
+    sha256 = "03wva48bgv1ad3df6plc9b8xxh6k8bcaxrhlzwh81c9mzn5bspzv";
   };
 
   propagatedBuildInputs = with pythonPackages; [

pkgs/tools/networking/cjdns/default.nix

@@ -1,6 +1,6 @@
 { stdenv, fetchFromGitHub, nodejs, which, python27, utillinux }:
 
-let version = "20"; in
+let version = "20.1"; in
 stdenv.mkDerivation {
   name = "cjdns-"+version;
 
@@ -8,7 +8,7 @@ stdenv.mkDerivation {
     owner = "cjdelisle";
     repo = "cjdns";
     rev = "cjdns-v${version}";
-    sha256 = "0gqcspiz1n0j711vwq807cy456dkcf03r376l04qc92173g2fzrx";
+    sha256 = "033q8av46y0q8vxyqvb4yjh1lz6a17mmk8lhdpwdcqnsws8xjjsw";
   };
 
   buildInputs = [ which python27 nodejs ] ++

pkgs/tools/networking/http-prompt/default.nix

@@ -1,14 +1,14 @@
 { stdenv, fetchFromGitHub, pythonPackages, httpie }:
 
 pythonPackages.buildPythonApplication rec {
-  version = "0.11.0";
+  version = "0.11.1";
   name = "http-prompt";
 
   src = fetchFromGitHub {
     rev = "v${version}";
     repo = "http-prompt";
     owner = "eliangcs";
-    sha256 = "0arl85880nnyfx8cvpzm6cr8nalhyrkz5zqfr628p487rwqv45ip";
+    sha256 = "0gi76wcn6lxkd74ljpbyhr7ylhq6sm8z7h66dnfmpsw4nhw49178";
   };
 
   propagatedBuildInputs = with pythonPackages; [

pkgs/tools/networking/iperf/3.nix

@@ -10,22 +10,13 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ openssl ];
 
-  preConfigure = stdenv.lib.optionalString stdenv.hostPlatform.isMusl ''
-    NIX_CFLAGS_COMPILE+=" -D_GNU_SOURCE"
-  '';
-
   patches = stdenv.lib.optionals stdenv.hostPlatform.isMusl [
-    (fetchpatch {
-      url = "http://git.alpinelinux.org/cgit/aports/plain/main/iperf3/build-fixes.patch";
-      name = "fix-musl-build.patch";
-      sha256 = "0zvfjnqdldh6rc6qggyb310swdnl9qk0m3z1kklnqzgjsh8dskvl";
-    })
     (fetchpatch {
       url = "http://git.alpinelinux.org/cgit/aports/plain/main/iperf3/remove-pg-flags.patch";
       name = "remove-pg-flags.patch";
       sha256 = "0lnczhass24kgq59drgdipnhjnw4l1cy6gqza7f2ah1qr4q104rm";
     })
-];
+  ];
 
   postInstall = ''
     ln -s iperf3 $out/bin/iperf

pkgs/tools/package-management/rpm/default.nix

@@ -18,7 +18,8 @@ stdenv.mkDerivation rec {
   buildInputs = [ cpio zlib bzip2 file libarchive nspr nss db xz python lua ];
 
   # rpm/rpmlib.h includes popt.h, and then the pkg-config file mentions these as linkage requirements
-  propagatedBuildInputs = [ popt elfutils nss db bzip2 libarchive libbfd ];
+  propagatedBuildInputs = [ popt nss db bzip2 libarchive libbfd ]
+    ++ stdenv.lib.optional stdenv.isLinux elfutils;
 
   NIX_CFLAGS_COMPILE = "-I${nspr.dev}/include/nspr -I${nss.dev}/include/nss";
 
@@ -59,6 +60,6 @@ stdenv.mkDerivation rec {
     license = licenses.gpl2;
     description = "The RPM Package Manager";
     maintainers = with maintainers; [ copumpkin ];
-    platforms = platforms.linux;
+    platforms = platforms.linux ++ platforms.darwin;
   };
 }

pkgs/tools/security/sops/default.nix

@@ -2,7 +2,7 @@
 
 buildGoPackage rec {
   name = "sops-${version}";
-  version = "2.0.8";
+  version = "3.0.2";
 
   goPackagePath = "go.mozilla.org/sops";
 
@@ -10,7 +10,7 @@ buildGoPackage rec {
     rev = version;
     owner = "mozilla";
     repo = "sops";
-    sha256 = "0kawnp24i3r981hz6apfwhgp71002vjq7ir54arq0zkssmykms1c";
+    sha256 = "0zszlb35cmw9j9dg1bpcbwxwh094wcfxhas4ns58jp5n79rqwv9i";
   };
 
   meta = with stdenv.lib; {

pkgs/tools/system/supervise/default.nix

@@ -3,11 +3,11 @@
 stdenv.mkDerivation rec {
 
   name = "supervise-${version}";
-  version = "1.3.0";
+  version = "1.4.0";
 
   src = fetchzip {
     url = "https://github.com/catern/supervise/releases/download/v${version}/supervise-${version}.tar.gz";
-    sha256 = "1y3jaqzprlkba2165nlcr250jc3mpxawd5sfjryb3db1nw66al04";
+    sha256 = "0jk6q2f67pfs18ah040lmsbvbrnjap7w04jjddsfn1j5bcrvs13x";
   };
 
   meta = with stdenv.lib; {

pkgs/tools/text/shocco/default.nix

@@ -0,0 +1,28 @@
+{ stdenv, fetchFromGitHub, perlPackages, pythonPackages }:
+
+stdenv.mkDerivation rec {
+  name = "shocco-${version}";
+  version = "1.0";
+
+  src = fetchFromGitHub {
+    owner = "rtomayko";
+    repo = "shocco";
+    rev = version;
+    sha256 = "1nkwcw9fqf4vyrwidqi6by7nrmainkjqkirkz3yxmzk6kzwr38mi";
+  };
+
+  prePatch = ''
+    # Don't change $PATH
+    substituteInPlace configure --replace PATH= NIRVANA=
+  '';
+
+  buildInputs = [ perlPackages.TextMarkdown pythonPackages.pygments ];
+
+  meta = with stdenv.lib; {
+    description = "A quick-and-dirty, literate-programming-style documentation generator for / in POSIX shell";
+    homepage = https://rtomayko.github.io/shocco/;
+    license = licenses.mit;
+    platforms = platforms.all;
+    maintainers = with maintainers; [ dotlambda ];
+  };
+}

pkgs/top-level/all-packages.nix

@@ -687,6 +687,13 @@ with pkgs;
 
   androidsdk_extras = self.androidenv.androidsdk_8_0_extras;
 
+  webos = recurseIntoAttrs {
+    cmake-modules = callPackage ../development/mobile/webos/cmake-modules.nix { };
+
+    novacom = callPackage ../development/mobile/webos/novacom.nix { };
+    novacomd = callPackage ../development/mobile/webos/novacomd.nix { };
+  };
+
   arc-theme = callPackage ../misc/themes/arc { };
 
   arc-kde-theme = callPackage ../misc/themes/arc-kde { };
@@ -884,6 +891,8 @@ with pkgs;
     inherit (darwin.apple_sdk.frameworks) Cocoa;
   };
 
+  cue2pops = callPackage ../tools/cd-dvd/cue2pops { };
+
   cabal2nix = haskell.lib.overrideCabal haskellPackages.cabal2nix (drv: {
     isLibrary = false;
     enableSharedExecutables = false;
@@ -1033,6 +1042,8 @@ with pkgs;
 
   dateutils = callPackage ../tools/misc/dateutils { };
 
+  ddar = pythonPackages.callPackage ../tools/backup/ddar { };
+
   ddate = callPackage ../tools/misc/ddate { };
 
   dehydrated = callPackage ../tools/admin/dehydrated { };
@@ -1511,9 +1522,8 @@ with pkgs;
   nrg2iso = callPackage ../tools/cd-dvd/nrg2iso { };
 
   libceph = ceph.lib;
-  ceph = callPackage ../tools/filesystems/ceph { boost = boost159; };
+  ceph = callPackage ../tools/filesystems/ceph { boost = boost165; };
   ceph-dev = ceph;
-  #ceph-dev = lowPrio (callPackage ../tools/filesystems/ceph/dev.nix { });
 
   cfdg = callPackage ../tools/graphics/cfdg {
     ffmpeg = ffmpeg_2;
@@ -4500,6 +4510,8 @@ with pkgs;
 
   rnv = callPackage ../tools/text/xml/rnv { };
 
+  roundup = callPackage ../tools/misc/roundup { };
+
   routino = callPackage ../tools/misc/routino { };
 
   rq = callPackage ../development/tools/rq {
@@ -4630,6 +4642,8 @@ with pkgs;
 
   sharutils = callPackage ../tools/archivers/sharutils { };
 
+  shocco = callPackage ../tools/text/shocco { };
+
   shotwell = callPackage ../applications/graphics/shotwell { };
 
   shout = nodePackages.shout;
@@ -5757,7 +5771,7 @@ with pkgs;
   compcert = callPackage ../development/compilers/compcert { };
 
   cpp-gsl = callPackage ../development/libraries/cpp-gsl { };
-  
+
   # Users installing via `nix-env` will likely be using the REPL,
   # which has a hard dependency on Z3, so make sure it is available.
   cryptol = haskellPackages.cryptol.overrideDerivation (oldAttrs: {
@@ -6749,6 +6763,8 @@ with pkgs;
 
   yosys = callPackage ../development/compilers/yosys { };
 
+  z88dk = callPackage ../development/compilers/z88dk { };
+
   zulu8 = callPackage ../development/compilers/zulu/8.nix { };
   zulu9 = callPackage ../development/compilers/zulu { };
   zulu = zulu9;
@@ -7082,7 +7098,13 @@ with pkgs;
 
   pyrex096 = callPackage ../development/interpreters/pyrex/0.9.6.nix { };
 
-  racket = callPackage ../development/interpreters/racket { };
+  racket = callPackage ../development/interpreters/racket {
+    # racket 6.11 doesn't build with gcc6 + recent glibc:
+    # https://github.com/racket/racket/pull/1886
+    # https://github.com/NixOS/nixpkgs/pull/31017#issuecomment-343574769
+    stdenv = overrideCC stdenv gcc7;
+  };
+  racket-minimal = callPackage ../development/interpreters/racket/minimal.nix { };
 
   rakudo = callPackage ../development/interpreters/rakudo {
     inherit (darwin.apple_sdk.frameworks) CoreServices ApplicationServices;
@@ -7319,6 +7341,8 @@ with pkgs;
   bazel_0_4 = callPackage ../development/tools/build-managers/bazel/0.4.nix { };
   bazel = callPackage ../development/tools/build-managers/bazel { };
 
+  buildBazelPackage = callPackage ../build-support/build-bazel-package { };
+
   bear = callPackage ../development/tools/build-managers/bear { };
 
   bin_replace_string = callPackage ../development/tools/misc/bin_replace_string { };
@@ -16949,6 +16973,8 @@ with pkgs;
 
   ptask = callPackage ../applications/misc/ptask { };
 
+  pulseaudio-dlna = callPackage ../applications/audio/pulseaudio-dlna { };
+
   pulseview = libsForQt5.callPackage ../applications/science/electronics/pulseview { };
 
   puredata = callPackage ../applications/audio/puredata { };
@@ -18576,6 +18602,8 @@ with pkgs;
 
   flightgear = libsForQt5.callPackage ../games/flightgear { };
 
+  flock = callPackage ../development/tools/flock { };
+
   freecell-solver = callPackage ../games/freecell-solver { };
 
   freeciv = callPackage ../games/freeciv { };
@@ -19133,6 +19161,7 @@ with pkgs;
 
   gnomeExtensions = {
     appindicator = callPackage ../desktops/gnome-3/extensions/appindicator { };
+    battery-status = callPackage ../desktops/gnome-3/extensions/battery-status { };
     caffeine = callPackage ../desktops/gnome-3/extensions/caffeine { };
     clipboard-indicator = callPackage ../desktops/gnome-3/extensions/clipboard-indicator { };
     dash-to-dock = callPackage ../desktops/gnome-3/extensions/dash-to-dock { };
@@ -19142,6 +19171,7 @@ with pkgs;
     nohotcorner = callPackage ../desktops/gnome-3/extensions/nohotcorner { };
     pixel-saver = callPackage ../desktops/gnome-3/extensions/pixel-saver { };
     remove-dropdown-arrows = callPackage ../desktops/gnome-3/extensions/remove-dropdown-arrows { };
+    taskwhisperer = callPackage ../desktops/gnome-3/extensions/taskwhisperer { };
     topicons-plus = callPackage ../desktops/gnome-3/extensions/topicons-plus { };
   };
 
@@ -19722,6 +19752,8 @@ with pkgs;
 
   pcalc = callPackage ../applications/science/math/pcalc { };
 
+  bcal = callPackage ../applications/science/math/bcal { };
+
   pspp = callPackage ../applications/science/math/pspp {
     inherit (gnome3) gtksourceview;
   };
@@ -20279,6 +20311,9 @@ with pkgs;
   mfcl2700dncupswrapper = callPackage ../misc/cups/drivers/mfcl2700dncupswrapper { };
   mfcl2700dnlpr = callPackage_i686 ../misc/cups/drivers/mfcl2700dnlpr { };
 
+  mfcl2720dwcupswrapper = callPackage ../misc/cups/drivers/mfcl2720dwcupswrapper { };
+  mfcl2720dwlpr = callPackage ../misc/cups/drivers/mfcl2720dwlpr { };
+
   samsung-unified-linux-driver_1_00_37 = callPackage ../misc/cups/drivers/samsung { };
   samsung-unified-linux-driver_4_01_17 = callPackage ../misc/cups/drivers/samsung/4.01.17.nix { };
   samsung-unified-linux-driver = callPackage ../misc/cups/drivers/samsung/4.00.39 { };

pkgs/top-level/perl-packages.nix

@@ -6292,6 +6292,22 @@ let self = _self // overrides; _self = with self; {
     buildInputs = [ DataUUID CryptCBC ];
   };
 
+  GSSAPI = buildPerlPackage rec {
+    name = "GSSAPPI-0.28";
+    src = fetchurl {
+      url = "http://search.cpan.org/CPAN/authors/id/A/AG/AGROLMS/GSSAPI-0.28.tar.gz";
+      sha256 = "1mkhwxjjlhr58pd770i9gnf7zy7jj092iv6jfbnb8bvnc5xjr3vx";
+    };
+    buildInputs = [ TestPod ];
+    propagatedBuildInputs = [ pkgs.heimdalFull ];
+    meta = {
+      maintainers = [ maintainers.limeytexan ];
+      description = "Perl extension providing access to the GSSAPIv2 library";
+      license = with stdenv.lib.licenses; [ artistic1 gpl1Plus ];
+    };
+    makeMakerFlags = "--gssapiimpl ${pkgs.heimdalFull.out}";
+  };
+
   Gtk2 = buildPerlPackage rec {
     name = "Gtk2-1.2498";
     src = fetchurl {