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rPackages.BayesLogit: build with openblas

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This commit is contained in:
Thomas Tuegel 2015-06-09 11:43:00 -05:00
parent 71b848b45d
commit b120a737fd
2 changed files with 2 additions and 1 deletions
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1
pkgs/development/r-modules/default.nix
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@ -1087,6 +1087,7 @@ let
BayesLogit = old.BayesLogit.overrideDerivation (attrs: { BayesLogit = old.BayesLogit.overrideDerivation (attrs: {
patches = [ ./patches/BayesLogit.patch ]; patches = [ ./patches/BayesLogit.patch ];
buildInputs = (attrs.buildInputs or []) ++ [ pkgs.openblasCompat ];
}); });
BayesBridge = old.BayesBridge.overrideDerivation (attrs: { BayesBridge = old.BayesBridge.overrideDerivation (attrs: {

2
pkgs/development/r-modules/patches/BayesLogit_cblas.patch
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@ -6,7 +6,7 @@ diff -ru -x '*~' BayesLogit_orig/src/Makevars BayesLogit/src/Makevars
OBJECTS = Matrix.o MatrixFrame.o RRNG.o RNG.o FSF_nmix.o LogitWrapper.o \ OBJECTS = Matrix.o MatrixFrame.o RRNG.o RNG.o FSF_nmix.o LogitWrapper.o \
PolyaGamma.o PolyaGammaAlt.o PolyaGammaSP.o InvertY.o PolyaGamma.o PolyaGammaAlt.o PolyaGammaSP.o InvertY.o
-PKG_LIBS = $(BLAS_LIBS) $(FLIBS) $(LAPACK_LIBS) -PKG_LIBS = $(BLAS_LIBS) $(FLIBS) $(LAPACK_LIBS)
+PKG_LIBS = $(BLAS_LIBS) $(FLIBS) $(LAPACK_LIBS) -llapack -lf77blas -lcblas -latlas -lgfortran +PKG_LIBS = $(BLAS_LIBS) $(FLIBS) $(LAPACK_LIBS) -lopenblas
# PKG_CPPFLAGS = -DUSE_R -DNDEBUG -DDISABLE_SINGLE -DNTHROW -Wall -pedantic -Wextra # PKG_CPPFLAGS = -DUSE_R -DNDEBUG -DDISABLE_SINGLE -DNTHROW -Wall -pedantic -Wextra
PKG_CPPFLAGS = -DUSE_R -DNDEBUG -DDISABLE_SINGLE -DNTHROW PKG_CPPFLAGS = -DUSE_R -DNDEBUG -DDISABLE_SINGLE -DNTHROW