Merge remote-tracking branch 'upstream/master' into HEAD

pkgs/development/python-modules/bokeh/default.nix

@@ -34,11 +34,11 @@
 buildPythonPackage rec {
   pname = "bokeh";
   name = "${pname}${version}";
-  version = "0.12.7";
+  version = "0.12.9";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2c42c95bf1a418c758dbff8446b4f5e5fc72ac10ea5da4e6b5010067396d0880";
+    sha256 = "00jx3yycy6fziihz45hwj1dsh520h3vmypp28mw0877rxpxl2yxg";
   };
 
   disabled = isPyPy;
@@ -79,4 +79,4 @@ buildPythonPackage rec {
     homepage = "http://github.com/bokeh/bokeh";
     license = lib.licenses.bsd3;
   };
-}
+}

pkgs/development/python-modules/scipy/0.17.1.nix

@@ -1,56 +0,0 @@
-{lib, fetchurl, python, buildPythonPackage, isPyPy, gfortran, nose, numpy}:
-
-buildPythonPackage rec {
-  pname = "scipy";
-  version = "0.17.1";
-  name = "${pname}-${version}";
-
-  src = fetchurl {
-    url = "mirror://pypi/s/scipy/scipy-${version}.tar.gz";
-    sha256 = "1b1qpfz2j2rvmlplsjbnznnxnqr9ckbmis506110ii1w07wd4k4w";
-  };
-
-  buildInputs = [ gfortran nose numpy.blas ];
-  propagatedBuildInputs = [ numpy ];
-
-  # Remove tests because of broken wrapper
-  prePatch = ''
-    rm scipy/linalg/tests/test_lapack.py
-  '';
-
-  preConfigure = ''
-    sed -i '0,/from numpy.distutils.core/s//import setuptools;from numpy.distutils.core/' setup.py
-    export NPY_NUM_BUILD_JOBS=$NIX_BUILD_CORES
-  '';
-
-  preBuild = ''
-    echo "Creating site.cfg file..."
-    cat << EOF > site.cfg
-    [openblas]
-    include_dirs = ${numpy.blas}/include
-    library_dirs = ${numpy.blas}/lib
-    EOF
-  '';
-
-  enableParallelBuilding = true;
-
-  checkPhase = ''
-    runHook preCheck
-    pushd dist
-    ${python.interpreter} -c 'import scipy; scipy.test("fast", verbose=10)'
-    popd
-    runHook postCheck
-  '';
-
-  passthru = {
-    blas = numpy.blas;
-  };
-
-  setupPyBuildFlags = [ "--fcompiler='gnu95'" ];
-
-  meta = {
-    description = "SciPy (pronounced 'Sigh Pie') is open-source software for mathematics, science, and engineering. ";
-    homepage = http://www.scipy.org/;
-    maintainers = with lib.maintainers; [ fridh ];
-  };
-}

pkgs/development/python-modules/supervise_api/default.nix

@@ -0,0 +1,29 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, supervise
+}:
+
+buildPythonPackage rec {
+  pname = "supervise_api";
+  version = "0.1.5";
+
+  name = "${pname}-${version}";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1pqqlw80cjdgrlpvdmydkyhsrr4s531mn6bfkshm68j9gk4kq6px";
+  };
+
+  propagatedBuildInputs = [ supervise ];
+
+  # no tests
+  doCheck = false;
+
+  meta = {
+    description = "An API for running processes safely and securely";
+    homepage = https://github.com/catern/supervise;
+    license = lib.licenses.lgpl3;
+    maintainers = with lib.maintainers; [ catern ];
+  };
+}

pkgs/development/python-modules/xarray/default.nix

@@ -5,6 +5,7 @@
 , numpy
 , pandas
 , python
+, fetchurl
 }:
 
 buildPythonPackage rec {
@@ -17,6 +18,15 @@ buildPythonPackage rec {
     sha256 = "f649a41d43b5a6c64bdcbd57e994932656b689f9593a86dd0be95778a2b47494";
   };
 
+  # Temporary patch until next release (later than 0.9.6) to fix
+  # a broken test case.
+  patches = [
+    (fetchurl {
+      url = "https://github.com/pydata/xarray/commit/726c6a3638ecf95889c541d84e892a106c2f2f92.patch";
+      sha256 = "1i2hsj5v5qlvqfj48vyn9931yndsf4k4wrk3qpqpywh32s7r007b";
+    })
+  ];
+
   buildInputs = [ pytest ];
   propagatedBuildInputs = [numpy pandas];