Merge master into staging-next

pkgs/development/python-modules/atomman/default.nix

@@ -0,0 +1,40 @@
+{ stdenv
+, buildPythonPackage
+, fetchPypi
+, xmltodict
+, datamodeldict
+, numpy
+, matplotlib
+, scipy
+, pandas
+, cython
+, numericalunits
+, pytest
+}:
+
+buildPythonPackage rec {
+  version = "1.2.3";
+  pname = "atomman";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "9eb6acc5497263cfa89be8d0f383a9a69f0726b4ac6798c1b1d96f26705ec09c";
+  };
+
+  checkInputs = [ pytest ];
+  propagatedBuildInputs = [ xmltodict datamodeldict numpy matplotlib scipy pandas cython numericalunits ];
+
+  # tests not included with Pypi release
+  doCheck = false;
+
+  checkPhase = ''
+    py.test tests
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/usnistgov/atomman/;
+    description = "Atomistic Manipulation Toolkit";
+    license = licenses.mit;
+    maintainers = [ maintainers.costrouc ];
+  };
+}

pkgs/development/python-modules/beancount/default.nix

@@ -1,7 +1,7 @@
 { stdenv, buildPythonPackage, fetchPypi, isPy3k
 , beautifulsoup4, bottle, chardet, dateutil
 , google_api_python_client, lxml, ply, python_magic
-, nose, requests }:
+, pytest, requests }:
 
 buildPythonPackage rec {
   version = "2.1.3";
@@ -14,13 +14,8 @@ buildPythonPackage rec {
     sha256 = "4b7b0d3633c82ca88d3cb3d31ad2fd2e45a42401cfa94eaa1cb938ffece34f22";
   };
 
-  checkInputs = [ nose ];
-
-  # Automatic tests cannot be run because it needs to import some local modules for tests.
+  # No tests in archive
   doCheck = false;
-  checkPhase = ''
-    nosetests
-  '';
 
   propagatedBuildInputs = [
     beautifulsoup4
@@ -32,6 +27,9 @@ buildPythonPackage rec {
     ply
     python_magic
     requests
+    # pytest really is a runtime dependency
+    # https://bitbucket.org/blais/beancount/commits/554e13057551951e113835196770847c788dd592
+    pytest
   ];
 
   meta = {

pkgs/development/python-modules/coilmq/default.nix

@@ -1,5 +1,5 @@
 { stdenv, buildPythonPackage, fetchPypi
-, stompclient, pythondaemon, redis, pid, pytest, six, click, coverage
+, stompclient, python-daemon, redis, pid, pytest, six, click, coverage
 , sqlalchemy }:
 
 buildPythonPackage rec {
@@ -11,7 +11,7 @@ buildPythonPackage rec {
     sha256 = "4cbfeb5ed2459df14902c1380157be6267702b1271682924cd316ccad8a29d1d";
   };
 
-  propagatedBuildInputs = [ stompclient pythondaemon redis pid ];
+  propagatedBuildInputs = [ stompclient python-daemon redis pid ];
   buildInputs = [ pytest six click coverage sqlalchemy ];
 
   # The teste data is not included in the distribution

pkgs/development/python-modules/datamodeldict/default.nix

@@ -0,0 +1,27 @@
+{ stdenv
+, buildPythonPackage
+, fetchPypi
+, xmltodict
+}:
+
+buildPythonPackage rec {
+  version = "0.9.4";
+  pname = "DataModelDict";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "97d8e999e000cf69c48e57b1a72eb45a27d83576a38c6cd8550c230b018be7af";
+  };
+
+  propagatedBuildInputs = [ xmltodict ];
+
+  # no tests
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/usnistgov/DataModelDict/;
+    description = "Class allowing for data models equivalently represented as Python dictionaries, JSON, and XML";
+    license = licenses.mit;
+    maintainers = [ maintainers.costrouc ];
+  };
+}

pkgs/development/python-modules/gplaycli/default.nix

@@ -4,18 +4,18 @@
 
 buildPythonPackage rec {
   pname = "gplaycli";
-  version = "3.21";
+  version = "3.25";
 
   src = fetchFromGitHub {
     owner = "matlink";
     repo = "gplaycli";
     rev = version;
-    sha256 = "1r5nzi9yzswam0866gypjcvv3f1rw13jwx9s49chp8byxy1dyrs2";
+    sha256 = "1rygx5cg4b1vwpkiaq6jcpbc1ly7cspslv3sy7x8n8ba61ryq6h4";
   };
 
- disabled = !isPy3k;
+  disabled = !isPy3k;
 
- propagatedBuildInputs = [ libffi pyasn1 clint ndg-httpsclient protobuf requests args gpapi pyaxmlparser ];
+  propagatedBuildInputs = [ libffi pyasn1 clint ndg-httpsclient protobuf requests args gpapi pyaxmlparser ];
 
   meta = with stdenv.lib; {
     homepage = https://github.com/matlink/gplaycli;

pkgs/development/python-modules/libagent/default.nix

@@ -1,6 +1,6 @@
 { stdenv, fetchPypi, buildPythonPackage, ed25519, ecdsa , semver, mnemonic,
   unidecode, mock, pytest , backports-shutil-which, ConfigArgParse,
-  pythondaemon, pymsgbox }:
+  python-daemon, pymsgbox }:
 
 buildPythonPackage rec {
   pname = "libagent";
@@ -12,7 +12,7 @@ buildPythonPackage rec {
   };
 
   propagatedBuildInputs = [ unidecode backports-shutil-which ConfigArgParse
-    pythondaemon pymsgbox ecdsa ed25519 mnemonic semver ];
+    python-daemon pymsgbox ecdsa ed25519 mnemonic semver ];
 
   checkInputs = [ mock pytest ];
 

pkgs/development/python-modules/nbxmpp/default.nix

@@ -2,7 +2,7 @@
 
 let
   pname = "nbxmpp";
-  version = "0.6.6";
+  version = "0.6.8";
   name = "${pname}-${version}";
 in buildPythonPackage rec {
   inherit pname version;
@@ -11,7 +11,7 @@ in buildPythonPackage rec {
     name = "${name}.tar.bz2";
     url = "https://dev.gajim.org/gajim/python-nbxmpp/repository/archive.tar.bz2?"
         + "ref=${name}";
-    sha256 = "10n7z613p00q15dplsvdrz11s9yq26jy2qack6nd8k7fivfhlcmz";
+    sha256 = "09zrqz01j45kvayfscd66avkrnn237lbjg9li5hjhyw92h6hkkc4";
   };
 
   propagatedBuildInputs = [ pyopenssl ];

pkgs/development/python-modules/numericalunits/default.nix

@@ -0,0 +1,24 @@
+{ stdenv
+, buildPythonPackage
+, fetchPypi
+}:
+
+buildPythonPackage rec {
+  version = "1.16";
+  pname = "numericalunits";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "71ae8e236c7a223bccefffb670dca68be476dd63b7b9009641fc64099455da25";
+  };
+
+  # no tests
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    homepage = http://pypi.python.org/pypi/numericalunits;
+    description = "A package that lets you define quantities with unit";
+    license = licenses.mit;
+    maintainers = [ maintainers.costrouc ];
+  };
+}

pkgs/development/python-modules/pyzmq/default.nix

@@ -2,7 +2,7 @@
 , fetchPypi
 , pytest
 , tornado
-, zeromq3
+, zeromq
 , py
 , python
 }:
@@ -17,7 +17,7 @@ buildPythonPackage rec {
   };
 
   checkInputs = [  pytest tornado ];
-  buildInputs = [ zeromq3];
+  buildInputs = [ zeromq ];
   propagatedBuildInputs = [ py ];
 
   # test_socket.py seems to be hanging

pkgs/development/python-modules/salmon-mail/default.nix

@@ -1,5 +1,5 @@
 { stdenv, buildPythonPackage, fetchPypi, nose, dnspython
-,  chardet, lmtpd, pythondaemon, six, jinja2, mock }:
+,  chardet, lmtpd, python-daemon, six, jinja2, mock }:
 
 buildPythonPackage rec {
   pname = "salmon-mail";
@@ -11,7 +11,7 @@ buildPythonPackage rec {
   };
 
   checkInputs = [ nose jinja2 mock ];
-  propagatedBuildInputs = [ chardet dnspython lmtpd pythondaemon six ];
+  propagatedBuildInputs = [ chardet dnspython lmtpd python-daemon six ];
 
   # The tests use salmon executable installed by salmon itself so we need to add
   # that to PATH