diff --git a/lib/customisation.nix b/lib/customisation.nix
index 3be36fcd719..ac234e3b8c6 100644
--- a/lib/customisation.nix
+++ b/lib/customisation.nix
@@ -66,22 +66,31 @@ rec {
   */
   makeOverridable = f: origArgs:
     let
-      ff = f origArgs;
+      result = f origArgs;
+
+      # Creates a functor with the same arguments as f
+      copyArgs = g: lib.setFunctionArgs g (lib.functionArgs f);
+      # Changes the original arguments with (potentially a function that returns) a set of new attributes
       overrideWith = newArgs: origArgs // (if lib.isFunction newArgs then newArgs origArgs else newArgs);
+
+      # Re-call the function but with different arguments
+      overrideArgs = copyArgs (newArgs: makeOverridable f (overrideWith newArgs));
+      # Change the result of the function call by applying g to it
+      overrideResult = g: makeOverridable (copyArgs (args: g (f args))) origArgs;
     in
-      if builtins.isAttrs ff then (ff // {
-        override = newArgs: makeOverridable f (overrideWith newArgs);
-        overrideDerivation = fdrv:
-          makeOverridable (args: overrideDerivation (f args) fdrv) origArgs;
-        ${if ff ? overrideAttrs then "overrideAttrs" else null} = fdrv:
-          makeOverridable (args: (f args).overrideAttrs fdrv) origArgs;
-      })
-      else if lib.isFunction ff then {
-        override = newArgs: makeOverridable f (overrideWith newArgs);
-        __functor = self: ff;
-        overrideDerivation = throw "overrideDerivation not yet supported for functors";
-      }
-      else ff;
+      if builtins.isAttrs result then
+        result // {
+          override = overrideArgs;
+          overrideDerivation = fdrv: overrideResult (x: overrideDerivation x fdrv);
+          ${if result ? overrideAttrs then "overrideAttrs" else null} = fdrv:
+            overrideResult (x: x.overrideAttrs fdrv);
+        }
+      else if lib.isFunction result then
+        # Transform the result into a functor while propagating its arguments
+        lib.setFunctionArgs result (lib.functionArgs result) // {
+          override = overrideArgs;
+        }
+      else result;
 
 
   /* Call the package function in the file `fn' with the required
diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index 5cf709241d0..829053e5a22 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -2179,12 +2179,6 @@
     githubId = 2817965;
     name = "f--t";
   };
-  fleaz = {
-    email = "mail@felixbreidenstein.de";
-    github = "fleaz";
-    githubId = 2489598;
-    name = "Felix Breidenstein";
-  };
   fadenb = {
     email = "tristan.helmich+nixos@gmail.com";
     github = "fadenb";
diff --git a/nixos/modules/installer/tools/nixos-rebuild.sh b/nixos/modules/installer/tools/nixos-rebuild.sh
index ea434ca8741..891f374df53 100644
--- a/nixos/modules/installer/tools/nixos-rebuild.sh
+++ b/nixos/modules/installer/tools/nixos-rebuild.sh
@@ -22,6 +22,7 @@ repair=
 profile=/nix/var/nix/profiles/system
 buildHost=
 targetHost=
+maybeSudo=
 
 while [ "$#" -gt 0 ]; do
     i="$1"; shift 1
@@ -96,6 +97,9 @@ while [ "$#" -gt 0 ]; do
     esac
 done
 
+if [ -n "$SUDO_USER" ]; then
+    maybeSudo="sudo "
+fi
 
 if [ -z "$buildHost" -a -n "$targetHost" ]; then
     buildHost="$targetHost"
@@ -111,9 +115,9 @@ buildHostCmd() {
     if [ -z "$buildHost" ]; then
         "$@"
     elif [ -n "$remoteNix" ]; then
-        ssh $SSHOPTS "$buildHost" env PATH="$remoteNix:$PATH" "$@"
+        ssh $SSHOPTS "$buildHost" env PATH="$remoteNix:$PATH" "$maybeSudo$@"
     else
-        ssh $SSHOPTS "$buildHost" "$@"
+        ssh $SSHOPTS "$buildHost" "$maybeSudo$@"
     fi
 }
 
@@ -121,7 +125,7 @@ targetHostCmd() {
     if [ -z "$targetHost" ]; then
         "$@"
     else
-        ssh $SSHOPTS "$targetHost" "$@"
+        ssh $SSHOPTS "$targetHost" "$maybeSudo$@"
     fi
 }
 
diff --git a/nixos/modules/services/misc/lidarr.nix b/nixos/modules/services/misc/lidarr.nix
index 40755c16217..8ff1adadcf2 100644
--- a/nixos/modules/services/misc/lidarr.nix
+++ b/nixos/modules/services/misc/lidarr.nix
@@ -10,6 +10,12 @@ in
     services.lidarr = {
       enable = mkEnableOption "Lidarr";
 
+      dataDir = mkOption {
+        type = types.str;
+        default = "/var/lib/lidarr/.config/Lidarr";
+        description = "The directory where Lidarr stores its data files.";
+      };
+
       package = mkOption {
         type = types.package;
         default = pkgs.lidarr;
@@ -44,6 +50,10 @@ in
   };
 
   config = mkIf cfg.enable {
+    systemd.tmpfiles.rules = [
+      "d '${cfg.dataDir}' 0700 ${cfg.user} ${cfg.group} - -"
+    ];
+
     systemd.services.lidarr = {
       description = "Lidarr";
       after = [ "network.target" ];
@@ -53,11 +63,8 @@ in
         Type = "simple";
         User = cfg.user;
         Group = cfg.group;
-        ExecStart = "${cfg.package}/bin/Lidarr";
+        ExecStart = "${cfg.package}/bin/Lidarr -nobrowser -data='${cfg.dataDir}'";
         Restart = "on-failure";
-
-        StateDirectory = "lidarr";
-        StateDirectoryMode = "0770";
       };
     };
 
diff --git a/pkgs/applications/audio/friture/default.nix b/pkgs/applications/audio/friture/default.nix
index 483f873fbd5..eae4b651685 100644
--- a/pkgs/applications/audio/friture/default.nix
+++ b/pkgs/applications/audio/friture/default.nix
@@ -4,13 +4,13 @@ let
   py = python3Packages;
 in py.buildPythonApplication rec {
   pname = "friture";
-  version = "0.36";
+  version = "0.37";
 
   src = fetchFromGitHub {
     owner = "tlecomte";
-    repo = "friture";
+    repo = pname;
     rev = "v${version}";
-    sha256 = "1pz8v0qbzqq3ig9w33cp027s6c8rj316x5sy8pqs5nsiny9ddnk6";
+    sha256 = "1ivy5qfd90w1s1icsphvvdnnqz563v3fhg5pws2zn4483cgnzc2y";
   };
 
   # module imports scipy.misc.factorial, but it has been removed since scipy
@@ -37,8 +37,9 @@ in py.buildPythonApplication rec {
 
   meta = with lib; {
     description = "A real-time audio analyzer";
-    homepage = http://friture.org/;
+    homepage = "http://friture.org/";
     license = licenses.gpl3;
+    platforms = platforms.linux; # fails on Darwin
     maintainers = [ maintainers.laikq ];
   };
 }
diff --git a/pkgs/applications/audio/lsp-plugins/default.nix b/pkgs/applications/audio/lsp-plugins/default.nix
index f3abfbca145..47d8f165ad0 100644
--- a/pkgs/applications/audio/lsp-plugins/default.nix
+++ b/pkgs/applications/audio/lsp-plugins/default.nix
@@ -5,13 +5,13 @@
 
 stdenv.mkDerivation rec {
   pname = "lsp-plugins";
-  version = "1.1.9";
+  version = "1.1.10";
 
   src = fetchFromGitHub {
     owner = "sadko4u";
     repo = pname;
     rev = "${pname}-${version}";
-    sha256 = "1dzpl7f354rwp37bkr9h2yyafykcdn6m1qqfshqg77fj0pcsw8r2";
+    sha256 = "09gmwzh1gq1q2lxn8fc1bpdh02h8vr7r0i040c1nx256wgfsarqb";
   };
 
   nativeBuildInputs = [ pkgconfig php expat ];
@@ -154,6 +154,6 @@ stdenv.mkDerivation rec {
       homepage = https://lsp-plug.in;
       maintainers = with maintainers; [ magnetophon ];
       license = licenses.gpl2;
-      platforms = platforms.linux;
+      platforms = [ "x86_64-linux" ];
     };
 }
diff --git a/pkgs/applications/audio/waon/default.nix b/pkgs/applications/audio/waon/default.nix
new file mode 100644
index 00000000000..b27fdbffb7d
--- /dev/null
+++ b/pkgs/applications/audio/waon/default.nix
@@ -0,0 +1,30 @@
+{ stdenv, fetchFromGitHub, fftw, gtk2, libao, libsamplerate
+, libsndfile, ncurses, pkgconfig
+}:
+
+stdenv.mkDerivation rec {
+  pname = "waon";
+  version = "0.11";
+
+  src = fetchFromGitHub {
+    owner = "kichiki";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "1xmq8d2rj58xbp4rnyav95y1vnz3r9s9db7xxfa2rd0ilq0ps4y7";
+  };
+
+  nativeBuildInputs = [ pkgconfig ];
+  buildInputs = [ fftw gtk2 libao libsamplerate libsndfile ncurses ];
+
+  installPhase = ''
+    install -Dt $out/bin waon pv gwaon
+  '';
+
+  meta = with stdenv.lib; {
+    description = "A Wave-to-Notes transcriber";
+    homepage = https://kichiki.github.io/WaoN/;
+    license = licenses.gpl2;
+    maintainers = [ maintainers.puckipedia ];
+    platforms = platforms.all;
+  };
+}
diff --git a/pkgs/applications/editors/neovim/neovim-remote.nix b/pkgs/applications/editors/neovim/neovim-remote.nix
index 6ad3983a531..18f458fd85c 100644
--- a/pkgs/applications/editors/neovim/neovim-remote.nix
+++ b/pkgs/applications/editors/neovim/neovim-remote.nix
@@ -4,14 +4,14 @@ with stdenv.lib;
 
 pythonPackages.buildPythonApplication rec {
   pname = "neovim-remote";
-  version = "2.2.1";
+  version = "2.2.2";
   disabled = !pythonPackages.isPy3k;
 
   src = fetchFromGitHub {
     owner = "mhinz";
     repo = "neovim-remote";
     rev = "v${version}";
-    sha256 = "0f9x053yr8wq35l2s2dsnb0iygd4g4yya2h3iv0yh3440jjj5vfj";
+    sha256 = "129yjpwn6480rd5na866h4mcr6rf60rqv651hks5fn3ws112n751";
   };
 
   propagatedBuildInputs = with pythonPackages; [ pynvim psutil ];
diff --git a/pkgs/applications/editors/texmaker/default.nix b/pkgs/applications/editors/texmaker/default.nix
index 2a4459ddc3e..71043cb78fe 100644
--- a/pkgs/applications/editors/texmaker/default.nix
+++ b/pkgs/applications/editors/texmaker/default.nix
@@ -1,6 +1,6 @@
-{ stdenv, fetchurl, qtbase, qtscript, qmake, zlib, pkgconfig, poppler }:
+{ lib, mkDerivation, fetchurl, qtbase, qtscript, qmake, zlib, pkgconfig, poppler }:
 
-stdenv.mkDerivation rec {
+mkDerivation rec {
   pname = "texmaker";
   version = "5.0.3";
 
@@ -13,14 +13,15 @@ stdenv.mkDerivation rec {
   nativeBuildInputs = [ pkgconfig poppler qmake ];
   NIX_CFLAGS_COMPILE="-I${poppler.dev}/include/poppler";
 
-  preConfigure = ''
-    qmakeFlags="$qmakeFlags DESKTOPDIR=$out/share/applications ICONDIR=$out/share/pixmaps METAINFODIR=$out/share/metainfo"
-  '';
-
+  qmakeFlags = [
+    "DESKTOPDIR=${placeholder "out"}/share/applications"
+    "ICONDIR=${placeholder "out"}/share/pixmaps"
+    "METAINFODIR=${placeholder "out"}/share/metainfo"
+  ];
 
   enableParallelBuilding = true;
 
-  meta = with stdenv.lib; {
+  meta = with lib; {
     description = "TeX and LaTeX editor";
     longDescription=''
 	This editor is a full fledged IDE for TeX and
diff --git a/pkgs/applications/graphics/ImageMagick/7.0.nix b/pkgs/applications/graphics/ImageMagick/7.0.nix
index bd557f7b832..2c8430302c7 100644
--- a/pkgs/applications/graphics/ImageMagick/7.0.nix
+++ b/pkgs/applications/graphics/ImageMagick/7.0.nix
@@ -13,8 +13,8 @@ let
     else throw "ImageMagick is not supported on this platform.";
 
   cfg = {
-    version = "7.0.8-66";
-    sha256 = "0wih8ag5i6qg2zhbjrlcripb5ic5l6i1z04chnlgykb84n5pcirv";
+    version = "7.0.8-68";
+    sha256 = "07p3gdqdfmip7066n8v7ark8kgffg7miiin814lj4zg6p3h0aja7";
     patches = [];
   };
 in
diff --git a/pkgs/applications/graphics/gimp/wrapper.nix b/pkgs/applications/graphics/gimp/wrapper.nix
index 11c1e9ada93..d58dc375cb9 100644
--- a/pkgs/applications/graphics/gimp/wrapper.nix
+++ b/pkgs/applications/graphics/gimp/wrapper.nix
@@ -1,7 +1,7 @@
 { stdenv, lib, symlinkJoin, gimp, makeWrapper, gimpPlugins, gnome3, plugins ? null}:
 
 let
-allPlugins = lib.filter (pkg: builtins.isAttrs pkg && pkg.type == "derivation" && !pkg.meta.broken or false) (lib.attrValues gimpPlugins);
+allPlugins = lib.filter (pkg: lib.isDerivation pkg && !pkg.meta.broken or false) (lib.attrValues gimpPlugins);
 selectedPlugins = if plugins == null then allPlugins else plugins;
 extraArgs = map (x: x.wrapArgs or "") selectedPlugins;
 versionBranch = stdenv.lib.versions.majorMinor gimp.version;
diff --git a/pkgs/applications/graphics/ipe/default.nix b/pkgs/applications/graphics/ipe/default.nix
index ae2db5181cc..0cb09ecb643 100644
--- a/pkgs/applications/graphics/ipe/default.nix
+++ b/pkgs/applications/graphics/ipe/default.nix
@@ -3,11 +3,11 @@
 }:
 
 stdenv.mkDerivation rec {
-  name = "ipe-7.2.12";
+  name = "ipe-7.2.13";
 
   src = fetchurl {
     url = "https://dl.bintray.com/otfried/generic/ipe/7.2/${name}-src.tar.gz";
-    sha256 = "1qw1cmwzi3wxk4x916i9y4prhi9brnwl14i9a1cbw23x1sr7i6kw";
+    sha256 = "1a6a88r7j5z01z6k1z72a8g3n6lxdjjxxkdrzrfdd6df2gbs6g5g";
   };
 
   sourceRoot = "${name}/src";
diff --git a/pkgs/applications/graphics/kodelife/default.nix b/pkgs/applications/graphics/kodelife/default.nix
index 22cd252a3e7..961b0175da9 100644
--- a/pkgs/applications/graphics/kodelife/default.nix
+++ b/pkgs/applications/graphics/kodelife/default.nix
@@ -9,11 +9,11 @@
 
 stdenv.mkDerivation rec {
   pname = "kodelife";
-  version = "0.8.5.99";
+  version = "0.8.6.101";
 
   src = fetchzip {
     url = "https://hexler.net/pub/${pname}/${pname}-${version}-linux-x86_64.zip";
-    sha256 = "189i2j6kaygjb5pccynxv4pwqpy67jf9nfi7fjfhbrmjpqnmkp90";
+    sha256 = "1ldab1famdcby2djfys657g85d46s8k96m6mr71riw4v336ar238";
   };
 
   dontConfigure = true;
diff --git a/pkgs/applications/misc/cdrtools/fix-paths.patch b/pkgs/applications/misc/cdrtools/fix-paths.patch
deleted file mode 100644
index f4a54121088..00000000000
--- a/pkgs/applications/misc/cdrtools/fix-paths.patch
+++ /dev/null
@@ -1,32 +0,0 @@
-diff -ru3 cdrtools-3.01-old/DEFAULTS/Defaults.linux cdrtools-3.01/DEFAULTS/Defaults.linux
---- cdrtools-3.01-old/DEFAULTS/Defaults.linux	2015-12-11 17:37:21.505848835 +0300
-+++ cdrtools-3.01/DEFAULTS/Defaults.linux	2015-12-11 17:37:32.155828925 +0300
-@@ -57,7 +57,8 @@
- # Installation config stuff
- #
- ###########################################################################
--INS_BASE=	/opt/schily
-+#INS_BASE=	/opt/schily
-+INS_BASE=	$(out)
- INS_KBASE=	/
- INS_RBASE=	/
- #
-Only in cdrtools-3.01/DEFAULTS: Defaults.linux.orig
-diff -ru3 cdrtools-3.01-old/RULES/rules.prg cdrtools-3.01/RULES/rules.prg
---- cdrtools-3.01-old/RULES/rules.prg	2015-12-11 17:37:21.500848844 +0300
-+++ cdrtools-3.01/RULES/rules.prg	2015-12-11 17:38:29.890720987 +0300
-@@ -43,10 +43,10 @@
- #
- #SHELL=		/bin/sh
- 
--LN=		/bin/ln
--SYMLINK=	/bin/ln -s
--RM=		/bin/rm
--MV=		/bin/mv
-+LN=		ln
-+SYMLINK=	ln -s
-+RM=		rm
-+MV=		mv
- LORDER=		lorder
- TSORT=		tsort
- CTAGS=		vctags
diff --git a/pkgs/applications/misc/josm/default.nix b/pkgs/applications/misc/josm/default.nix
index 4b70530987f..857cc6c7456 100644
--- a/pkgs/applications/misc/josm/default.nix
+++ b/pkgs/applications/misc/josm/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "josm";
-  version = "15322";
+  version = "15390";
 
   src = fetchurl {
     url = "https://josm.openstreetmap.de/download/josm-snapshot-${version}.jar";
-    sha256 = "1i6cxs6rvqjwh7yfji5701xdzpnaxcv97gsd692fjrwasnsx1f1i";
+    sha256 = "1wxncd3mjd4j14svgpmvrxc0nkzfkpn0xlci7m7wp9hfp1l81v9f";
   };
 
   buildInputs = [ jdk11 makeWrapper ];
diff --git a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix
index dd289d203b8..c1d8703d1a9 100644
--- a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix
+++ b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix
@@ -1,935 +1,935 @@
 {
-  version = "69.0.2";
+  version = "70.0";
   sources = [
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-x86_64/ach/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-x86_64/ach/firefox-70.0.tar.bz2";
       locale = "ach";
       arch = "linux-x86_64";
-      sha512 = "650e140fded88137d72babd41abeeca478d7b48025b3bf0821467ac0a899932c0a49d59e94a5ec9dcf94b0c2fc40c4e1dee59591e7b9b3a09ccd2693e7588483";
+      sha512 = "796059cbd6e4aae3d48baf0822e5cf701167cfaebbcc1dd2ae66cc27001d1efda6e612ba0d8ba32fcd9a99c254241811b56b6c72fbef552199be65ce4558625e";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-x86_64/af/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-x86_64/af/firefox-70.0.tar.bz2";
       locale = "af";
       arch = "linux-x86_64";
-      sha512 = "d18a0c1b1e9df37c6ba034c5c39fdb4ddade929d949cca06df2b4d7b61e49ad0f9b333c19e8ef661bb80182c77ee69d4462aecb1cd7a91b0d4fa8a067fd2dbab";
+      sha512 = "ca2daa54599ef8fb1b303e8522c616a35f5639557aaba48d901d72d0c0e69fbc9294f3bf4ebae8743db94c0c583b41f50999069b3780b4aa42636f491ffa57cc";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-x86_64/an/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-x86_64/an/firefox-70.0.tar.bz2";
       locale = "an";
       arch = "linux-x86_64";
-      sha512 = "501fc660c9911b6949f9b43f68ba48f8ec775df22f59f20f34b13831f44954d53b88659974d01a52f184447052a196787f2c4df0219171e36f27e4f444a0877b";
+      sha512 = "3ee4b10d600f7e3c81b260d4c2a12df1e6cff35cd704ab92c0e7fc3e42b1a684d42380fc8bf32ac1caac7cb39a1b801f7ef95236d04053bb61aa1d726d4f0227";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-x86_64/ar/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-x86_64/ar/firefox-70.0.tar.bz2";
       locale = "ar";
       arch = "linux-x86_64";
-      sha512 = "df127eb1947d76ba1fcd7e75a39439331bd9cb6d1e4eae897a93696a816534df3f9210440f4536127b11a1866aee36fb8a7c4f1d0f5ee1234bffb815058f07cd";
+      sha512 = "330a6f4dff5305446673baf68ae3d146ac9ccd8e097f5e4305d4abf36830be1907bfd2d779d582af11b952654a4d93c0b3d0672f9e436ab6555a791cda08bf14";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-x86_64/ast/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-x86_64/ast/firefox-70.0.tar.bz2";
       locale = "ast";
       arch = "linux-x86_64";
-      sha512 = "8342887310ba51a523d966e413bda10d93ec8e23e593267ea287d3d5673df30dd9a991bff6358bb91f8c5a5825a0befb45b75b584326af8678fa305f0b5b6a6f";
+      sha512 = "6a916fdcf887363607faf172bd6246e519773d99f6cd5c0798e7efbf711fbebe302162df91e5280ddcbbea7e274eb06d8f7226b7a7f1da31286503bdf596cdf1";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-x86_64/az/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-x86_64/az/firefox-70.0.tar.bz2";
       locale = "az";
       arch = "linux-x86_64";
-      sha512 = "fc1c395390117c62770a362330068877928b9b3141195effe3ec49517016b501e56f5542c07b6f9245e61f31e046a2453aa8b521c37a08b7a521d8681fe531eb";
+      sha512 = "b6cd94852a55f52d1db40598729e40df3d4b39540b84b8afa856e88a54d608cdb2e19c574c53a80b93b2c3791ae877c7af30995d23c0a4da680f4410799f9219";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-x86_64/be/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-x86_64/be/firefox-70.0.tar.bz2";
       locale = "be";
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       arch = "linux-i686";
-      sha512 = "76a01cdae11ad8364cf32f1cb7580d728954b7a2d6944a8b1af49cef282b45a5727093723b34ffe3d488d8ec24925b88622afeb966008df4bfba8d495d2919f8";
+      sha512 = "50e31caaba97e97d276d579466b8e795de4983054b8d896c118dcd4e1d6d76e42c611578fd038e56210e928112be40891551b9f77d559f810976fa852072f5bc";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-i686/son/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-i686/son/firefox-70.0.tar.bz2";
       locale = "son";
       arch = "linux-i686";
-      sha512 = "9bbbb4f9062e700dbae41df85bba28aeb99aeb73850e02cdecbdde4bca3fcb6808cd1079a8102ca9279ff5f2349418414c958ff316dee9a05fa8bd8bb9d499ba";
+      sha512 = "0bbf0f8a6056686f0667e0c9881c339e1ce80b4fb490ac4b8c57efe4917800a021c1902c3c3c1a9564e75cfba8579889036408705a99ce0bde8fe5ee0d04f690";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-i686/sq/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-i686/sq/firefox-70.0.tar.bz2";
       locale = "sq";
       arch = "linux-i686";
-      sha512 = "396e93b74ca2a00a57569322d4d7874c8bb29b326003726d5c4ee0e3db22d6504b1d73232ee3120b3a6f7f5b7244d5c98e441cd0d8e190c6d5004e1971ee08d6";
+      sha512 = "11c7a99249b9772c498ad4deac24d7edb134b16cbe887f3ee0f126b458e75a36af9b0e92a0cae0fae628aaac3fce6dcb4587b0d685bf79a9f60c014b3f405a32";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-i686/sr/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-i686/sr/firefox-70.0.tar.bz2";
       locale = "sr";
       arch = "linux-i686";
-      sha512 = "8322797d3ede9d475a4b4b45472d513e3a2d6cb052a7645f0bc683e9df0fbba4bccf5fdbedb56e4136df1a4a1c5ac9b7aed49480aa6c8607fd5387bb5c50f0f7";
+      sha512 = "34a5ce24675ba5cfd3a4aaa9f2b16c02eb5b7fc69ff56d8eb77b2f1926ccaf91b6b939f883dc33c02fa8ad4059b365ef34579655fc5fe0ef62d655499f69d7c4";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-i686/sv-SE/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-i686/sv-SE/firefox-70.0.tar.bz2";
       locale = "sv-SE";
       arch = "linux-i686";
-      sha512 = "01550f47dcb1dd9fe5cf6fb00098ff910e71e0c1a58f9c8956f97de47cb67527df8e14a8b82fc878aed1ebba50e99183285252269c8d158e6e11ede5a5240073";
+      sha512 = "1d3aa632221ce02acf3979f775f73ed10564a95e32b61a88f17bb62588d77135458a2f022f947dd83a054a5dd338ee7e9ca2a8af1c94967bb878f26d40bb45fb";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-i686/ta/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-i686/ta/firefox-70.0.tar.bz2";
       locale = "ta";
       arch = "linux-i686";
-      sha512 = "3acfdcc73aab0ecda77f96fd37ae9643c619a14b1a9d88f6058d0b16e000352680d39e6e37498b62e234385c60d2ab1224943ea057b069a5b492cea24ba4a37f";
+      sha512 = "cefe0dd0a7a67e2c9667db1237cb1ca7429f64930f8adcd1ab869f86c3312c2f0b66d5bb48b8c58b98681ab7b616ead57d7938c3fffcb09518790fca00289dd8";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-i686/te/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-i686/te/firefox-70.0.tar.bz2";
       locale = "te";
       arch = "linux-i686";
-      sha512 = "768926b2fcf050675d3e9d915fd336d5c85f9e73a4a27e33bca7b78cc5161a0f142134fc8c0dac18f6cd47c309b1c90d5f21b8136075becb92e3f4e3507f6731";
+      sha512 = "2ff32eeacc9c7e45f906846ed2dee1b355f32cf72b21586a96721ab7f955fb613f1a7eea52bad86f62c5bfceeae75157f9289215370196c5c8c1cab4a993490a";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-i686/th/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-i686/th/firefox-70.0.tar.bz2";
       locale = "th";
       arch = "linux-i686";
-      sha512 = "d6b23302197682eb9c4c3323ee3a385c14844889adc8b82b9d6df837bc429b07ccb1c4c4ee5b383f1571a46a900b8c95eebd52649f118d716673f0be4cc8d0ae";
+      sha512 = "3f2eb44a22ac054b17023532ad63754ec7c97d2207d65578d3d299257e0336849b26a900a0378d6cd530116c39b23d23eef656ae1c9b23e7487a0e44682428b6";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-i686/tr/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-i686/tr/firefox-70.0.tar.bz2";
       locale = "tr";
       arch = "linux-i686";
-      sha512 = "7f3ea40a95b093191f3a83f29b2616f99f45bcdb5de5a796dd3d0c10b08317d5e39a63133436e9109a39c76846163a46b9be1b16c6b22059176f5f8c902c8046";
+      sha512 = "ad2e3012a112ceb4dc2568620880876b8d019a2c555dda76871375a0693fdf7a28eb17676d8dc3883817bc2ab9a573b1698b00bb45d9d8e676160826bea3c275";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-i686/uk/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-i686/uk/firefox-70.0.tar.bz2";
       locale = "uk";
       arch = "linux-i686";
-      sha512 = "3c09c74b77226548dc5842fe67990f69b89a6dec5f86f4bcf98cc7a04ec8810e55e988350c231b951c96d3005c86e45a27e9fc507acd1855a86c42ce8aeb3194";
+      sha512 = "85c3d12cff1d8506bc20e1440666ff79b86ad546dafb85b7305b0d707512520e1d6872356135ab722b44496f6c48008eb136a95beb9fb519b7e02f7254f78e7a";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-i686/ur/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-i686/ur/firefox-70.0.tar.bz2";
       locale = "ur";
       arch = "linux-i686";
-      sha512 = "098a78e40511e2ab7d2b093da2c34867b46fdf8f9bf7ee123641149da5ca11cb9ab8aa9be2665bc58521fd1d7b3ab1a05a28c78ba15bec9ed15aebe838014d79";
+      sha512 = "dcdf8f9b8efe9ed9f077d88b4a8420e325c255e52be381ba359c577f47ba32efe9e840b82629cc3b6c3795a5dcf070833d7ca4581953cdb5a0c9326e8e09c442";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-i686/uz/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-i686/uz/firefox-70.0.tar.bz2";
       locale = "uz";
       arch = "linux-i686";
-      sha512 = "9a9d1c10a787e69afc67d352fe5626993b23a4d04c17463e80001350dfbd0703af1793dbe5040e6614de268ec1d7d3789fc0363635d1bc773a7a6da94bb2778c";
+      sha512 = "bf923d512e471f5072cce6e32c13dafa4cb059a486765b9c7cd0e31ecc2b7c1bea872ada937de0952837122b34e91b863fbbd0263b8a9ae3907eb90080f662b9";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-i686/vi/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-i686/vi/firefox-70.0.tar.bz2";
       locale = "vi";
       arch = "linux-i686";
-      sha512 = "18fb0259a310543991eccb796debfb156a77a942cb94264105526f5637c9d39b21fc033e62c837d41b3b316732caa6d3118abfc48ac0b3188c8a995dac95c828";
+      sha512 = "3ef0e1b570effd6d6fdc5d5962d5fad945007ebf2c63a2aa4eac858d3ea44ce390c4583906b7a018df459220cad137d8068884f3786dd964bdf73a605aa82fa7";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-i686/xh/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-i686/xh/firefox-70.0.tar.bz2";
       locale = "xh";
       arch = "linux-i686";
-      sha512 = "ef8008332ec10d03a24928e13c01bb9bf6c75efd9a96e992d00dae4ffb250d054724752189bcc87c88edf502002130af626082b4320ca644de7da10b84306a44";
+      sha512 = "44199e59e81ea8f4d6174ee13890c5d1c35758b0b22839f04621011bb8242cf94e2b0928b6aa9de3dfca97e274d939277d947e7b4361a38a499dc378a6fd84ca";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-i686/zh-CN/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-i686/zh-CN/firefox-70.0.tar.bz2";
       locale = "zh-CN";
       arch = "linux-i686";
-      sha512 = "55920dcac08a969e5db550fe22c419043011301bc9d7863bbd0744350f267d66cfd6deb63de8690ad363d047570a5e9e8354d649730dcc7bc2570b6e409f0f98";
+      sha512 = "d390c068060e7663d30183068ce6edd5a9d19f4df34e28797a49d5eaf5b16b75d25b605fcea0d767f6974dfa308fbe7da614507464212c78224076f37c504596";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/69.0.2/linux-i686/zh-TW/firefox-69.0.2.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/70.0/linux-i686/zh-TW/firefox-70.0.tar.bz2";
       locale = "zh-TW";
       arch = "linux-i686";
-      sha512 = "96677bf71dd3ecf7466fcc8b6b7fb41470634a7c1eae4662c6f6a509f3f97ebfddae10d28e3d575a2caa573996fcd386359244860e2962b0c345fb7cb8591be9";
+      sha512 = "7d55f567cddaa58186d21d37b21b82b137a2eee032201bdd9fd4870133b1b44d45f09a0b6524d180c91238926e2a96797206eb34ca31059d0bd4f1e3a6537ae0";
     }
     ];
 }
diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix
index 2b6949d4c34..ffe1d65c8a1 100644
--- a/pkgs/applications/networking/browsers/firefox/packages.nix
+++ b/pkgs/applications/networking/browsers/firefox/packages.nix
@@ -100,10 +100,10 @@ rec {
 
   firefox-esr-68 = common rec {
     pname = "firefox-esr";
-    ffversion = "68.1.0esr";
+    ffversion = "68.2.0esr";
     src = fetchurl {
       url = "mirror://mozilla/firefox/releases/${ffversion}/source/firefox-${ffversion}.source.tar.xz";
-      sha512 = "0n8iy9xwf8wldkknq3y3nlm0cmb48baamvz4wmmbpfb2kfrxbsj3wnnd9ayk9zxhrsdq0na9gvkc374mv06nyqijrahd67wljv08fx5";
+      sha512 = "3p4gic3nlz1rxfc64xnv6vgfvf84w8752vpkdc1sfl3qx0w05q5d23rsvmkm8nb45bnsq3ch3jsrsh4p6fan4k9hvmzv8zgp6k2qlpn";
     };
 
     patches = [
diff --git a/pkgs/applications/networking/mailreaders/notmuch/default.nix b/pkgs/applications/networking/mailreaders/notmuch/default.nix
index 01081ebfb3e..64faee641f0 100644
--- a/pkgs/applications/networking/mailreaders/notmuch/default.nix
+++ b/pkgs/applications/networking/mailreaders/notmuch/default.nix
@@ -12,7 +12,7 @@
 with stdenv.lib;
 
 stdenv.mkDerivation rec {
-  version = "0.29.1";
+  version = "0.29.2";
   pname = "notmuch";
 
   passthru = {
@@ -22,7 +22,7 @@ stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "https://notmuchmail.org/releases/${pname}-${version}.tar.xz";
-    sha256 = "0rg3rwghd3wivf3bmqcqpkkd5c779ld5hi363zjcw5fl6a7gqilq";
+    sha256 = "1pjmrnbn0iavm5pnw7wgfw5d6hg5i6miqfa6s7s4027vn94n3nhv";
   };
 
   nativeBuildInputs = [ pkgconfig ];
diff --git a/pkgs/applications/science/biology/dcm2niix/default.nix b/pkgs/applications/science/biology/dcm2niix/default.nix
index 63d51de9930..7c328034a30 100644
--- a/pkgs/applications/science/biology/dcm2niix/default.nix
+++ b/pkgs/applications/science/biology/dcm2niix/default.nix
@@ -6,14 +6,14 @@
 }:
 
 stdenv.mkDerivation rec {
-  version = "1.0.20190410";
+  version = "1.0.20190902";
   pname = "dcm2niix";
 
   src = fetchFromGitHub {
     owner = "rordenlab";
     repo = "dcm2niix";
     rev = "v${version}";
-    sha256 = "1prwpvbi76xlpkhc4kadjhyyx0s71cs30hi6anknhfm6hdyd26ms";
+    sha256 = "0h8jsadgv831lqb0jhnaxm7lldirmnp5agrhgg5bcxvn860fl15b";
   };
 
   enableParallelBuilding = true;
diff --git a/pkgs/applications/science/biology/picard-tools/default.nix b/pkgs/applications/science/biology/picard-tools/default.nix
index 8fff296affa..5a9cb5de528 100644
--- a/pkgs/applications/science/biology/picard-tools/default.nix
+++ b/pkgs/applications/science/biology/picard-tools/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "picard-tools";
-  version = "2.20.8";
+  version = "2.21.1";
 
   src = fetchurl {
     url = "https://github.com/broadinstitute/picard/releases/download/${version}/picard.jar";
-    sha256 = "01bibkwyp4xzwcpvkr3ab6z0syjmzj4zmyxl3bybmrp9irhjvydg";
+    sha256 = "0knfx0by7rml19kr5ynb7860iykij1z1mx2hx0bg3s287sld1ppl";
   };
 
   nativeBuildInputs = [ makeWrapper ];
diff --git a/pkgs/applications/science/chemistry/jmol/default.nix b/pkgs/applications/science/chemistry/jmol/default.nix
index f9dc759d67a..7edd33ea4a4 100644
--- a/pkgs/applications/science/chemistry/jmol/default.nix
+++ b/pkgs/applications/science/chemistry/jmol/default.nix
@@ -17,14 +17,14 @@ let
   };
 in
 stdenv.mkDerivation rec {
-  version = "14.29.53";
+  version = "14.29.54";
   pname = "jmol";
 
   src = let
     baseVersion = "${lib.versions.major version}.${lib.versions.minor version}";
   in fetchurl {
     url = "mirror://sourceforge/jmol/Jmol/Version%20${baseVersion}/Jmol%20${version}/Jmol-${version}-binary.tar.gz";
-    sha256 = "0wdkiprccgvc5nh6h616l282fbd5mx5z3aiq2y558qa4gn22nqrq";
+    sha256 = "0f4a50rkba8g19d4vm4my0alc10g6p4myn7nqbjlcawx3z8k1dpb";
   };
 
   patchPhase = ''
diff --git a/pkgs/applications/science/math/nauty/default.nix b/pkgs/applications/science/math/nauty/default.nix
index 4efe8da1918..986610eea60 100644
--- a/pkgs/applications/science/math/nauty/default.nix
+++ b/pkgs/applications/science/math/nauty/default.nix
@@ -4,10 +4,10 @@
 }:
 stdenv.mkDerivation rec {
   pname = "nauty";
-  version = "26r11";
+  version = "26r12";
   src = fetchurl {
     url = "http://pallini.di.uniroma1.it/nauty${version}.tar.gz";
-    sha256 = "05z6mk7c31j70md83396cdjmvzzip1hqb88pfszzc6k4gy8h3m2y";
+    sha256 = "1p4mxf8q5wm47nxyskxbqwa5p1vvkycv1zgswvnk9nsn6vff0al6";
   };
   outputs = [ "out" "dev" ];
   configureFlags = {
diff --git a/pkgs/applications/version-management/git-repo/default.nix b/pkgs/applications/version-management/git-repo/default.nix
index d1eda015cc5..b4fee1c90fa 100644
--- a/pkgs/applications/version-management/git-repo/default.nix
+++ b/pkgs/applications/version-management/git-repo/default.nix
@@ -4,13 +4,13 @@
 
 stdenv.mkDerivation rec {
   pname = "git-repo";
-  version = "1.13.7";
+  version = "1.13.7.1";
 
   src = fetchFromGitHub {
     owner = "android";
     repo = "tools_repo";
     rev = "v${version}";
-    sha256 = "019pnf0g2dzdrbmckd96xq9md1qh8r5bwfj02qjrdg228lc9hzv4";
+    sha256 = "0acsvrc45kdwpj5mi5i61mibr1fdx4g4835c3b8x0fdgrya4n37c";
   };
 
   nativeBuildInputs = [ makeWrapper ];
diff --git a/pkgs/applications/virtualization/dumb-init/default.nix b/pkgs/applications/virtualization/dumb-init/default.nix
new file mode 100644
index 00000000000..c7be90222c2
--- /dev/null
+++ b/pkgs/applications/virtualization/dumb-init/default.nix
@@ -0,0 +1,31 @@
+{ stdenv, fetchFromGitHub, glibc }:
+
+stdenv.mkDerivation rec {
+  pname = "dumb-init";
+  version = "1.2.2";
+
+  src = fetchFromGitHub {
+    owner = "Yelp";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "15hgl8rz5dmrl5gx21sq5269l1hq539qn68xghjx0bv9hgbx0g20";
+  };
+
+  buildInputs = [ glibc.static ];
+
+  installPhase = ''
+    runHook preInstall
+
+    install -Dm755 -t $out/bin dumb-init
+
+    runHook postInstall
+  '';
+
+  meta = with stdenv.lib; {
+    description = "A minimal init system for Linux containers";
+    homepage = "https://github.com/Yelp/dumb-init";
+    license = licenses.mit;
+    maintainers = [ maintainers.marsam ];
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix b/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix
index 76eac2e0ebb..f382e605bac 100644
--- a/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix
+++ b/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix
@@ -34,7 +34,7 @@ mkDerivation rec {
     # The Qt5 platforms plugin is vendored in the package, however what's there is not always up-to-date with what's in nixpkgs.
     # We simply copy the headers from qtbase's source tarball.
     mkdir -p platformplugin/libqt5xcbqpa-dev/${qtbase.version}
-    cp -r ../qtbase-everywhere-src-5.12.4/src/plugins/platforms/xcb/*.h platformplugin/libqt5xcbqpa-dev/${qtbase.version}/
+    cp -r ../qtbase-everywhere-src-${qtbase.version}/src/plugins/platforms/xcb/*.h platformplugin/libqt5xcbqpa-dev/${qtbase.version}/
   '';
 
   qmakeFlags = [
diff --git a/pkgs/desktops/pantheon/apps/elementary-files/default.nix b/pkgs/desktops/pantheon/apps/elementary-files/default.nix
index 0decbbc6c7a..8f5837fb2a3 100644
--- a/pkgs/desktops/pantheon/apps/elementary-files/default.nix
+++ b/pkgs/desktops/pantheon/apps/elementary-files/default.nix
@@ -5,7 +5,7 @@
 , meson
 , ninja
 , gettext
-, vala
+, vala_0_44
 , python3
 , desktop-file-utils
 , libcanberra
@@ -56,7 +56,7 @@ stdenv.mkDerivation rec {
     ninja
     pkgconfig
     python3
-    vala
+    vala_0_44 # https://github.com/elementary/files/issues/1081
     wrapGAppsHook
   ];
 
diff --git a/pkgs/development/compilers/elm/default.nix b/pkgs/development/compilers/elm/default.nix
index 9dbde319f0a..321176ea514 100644
--- a/pkgs/development/compilers/elm/default.nix
+++ b/pkgs/development/compilers/elm/default.nix
@@ -27,9 +27,23 @@ let
             The elm-format expression is updated via a script in the https://github.com/avh4/elm-format repo:
             `package/nix/build.sh`
             */
-            #elm-format = justStaticExecutables (doJailbreak (self.callPackage ./packages/elm-format.nix {}));
+            elm-format = justStaticExecutables (overrideCabal (self.callPackage ./packages/elm-format.nix {}) (drv: {
+              # GHC 8.8.1 support
+              # https://github.com/avh4/elm-format/pull/640
+              patches = [(
+                fetchpatch {
+                  url = "https://github.com/turboMaCk/elm-format/commit/4f4abdc7117ed6ce3335f6cf39b6495b48067b7c.patch";
+                  sha256 = "1zqk6q6w0ph12mnwffgwzf4h1hcgqg0v09ws9q2g5bg2riq4rvd9";
+                }
+              )];
+              # Tests are failing after upgrade to ghc881.
+              # Cause is probably just a minor change in stdout output
+              # see https://github.com/avh4/elm-format/pull/640
+              doCheck = false;
+              jailbreak = true;
+            }));
             elmi-to-json = justStaticExecutables (overrideCabal (self.callPackage ./packages/elmi-to-json.nix {}) (drv: {
-              prePatch = '' 
+              prePatch = ''
                 substituteInPlace package.yaml --replace "- -Werror" ""
                 hpack
               '';
diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
index 657fc791caf..527e355883c 100644
--- a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
+++ b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
@@ -6322,7 +6322,6 @@ broken-packages:
   - incremental-computing
   - incremental-maps
   - increments
-  - indents
   - indexation
   - IndexedList
   - indextype
diff --git a/pkgs/development/interpreters/janet/default.nix b/pkgs/development/interpreters/janet/default.nix
index d00e37733f2..337b83767f4 100644
--- a/pkgs/development/interpreters/janet/default.nix
+++ b/pkgs/development/interpreters/janet/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "janet";
-  version = "1.3.1";
+  version = "1.4.0";
 
   src = fetchFromGitHub {
     owner = "janet-lang";
     repo = pname;
     rev = "v${version}";
-    sha256 = "160wd3436cl50wkvqpaf6mbb69qlzzammcg5yb07wx9yw31g399p";
+    sha256 = "0xszmgw5nl5b6gd3344h1mic1c1a3hj7nivp4d9hqzzh131qvbn5";
   };
 
   nativeBuildInputs = [ meson ninja ];
diff --git a/pkgs/development/interpreters/joker/default.nix b/pkgs/development/interpreters/joker/default.nix
index 233900cadd0..669bbc95123 100644
--- a/pkgs/development/interpreters/joker/default.nix
+++ b/pkgs/development/interpreters/joker/default.nix
@@ -2,13 +2,13 @@
 
 buildGoModule rec {
   pname = "joker";
-  version = "0.12.7";
+  version = "0.12.9";
 
   src = fetchFromGitHub {
     rev = "v${version}";
     owner = "candid82";
     repo = "joker";
-    sha256 = "0panmhrg1i158xbvqvq3s3217smbj7ynwlaiks18pmss36xx9dk4";
+    sha256 = "19n2pzs045mflyzgq3cpa4w2fbd0f77j5k6c4yc3gk0mcwgdxhs2";
   };
 
   modSha256 = "0i16vf7n1xfz5kp9w3fvyc9y9wgz4h396glgpdaznpxjr12rb43j";
diff --git a/pkgs/development/interpreters/racket/default.nix b/pkgs/development/interpreters/racket/default.nix
index f13adc21d9e..22b4d84f050 100644
--- a/pkgs/development/interpreters/racket/default.nix
+++ b/pkgs/development/interpreters/racket/default.nix
@@ -46,7 +46,7 @@ in
 
 stdenv.mkDerivation rec {
   pname = "racket";
-  version = "7.3"; # always change at once with ./minimal.nix
+  version = "7.4"; # always change at once with ./minimal.nix
 
   src = (stdenv.lib.makeOverridable ({ name, sha256 }:
     fetchurl {
@@ -55,7 +55,7 @@ stdenv.mkDerivation rec {
     }
   )) {
     inherit ;name = "${pname}-${version}";
-    sha256 = "0h6072njhb87rkz4arijvahxgjzn8r14s4wns0ijvxm89bg136yl";
+    sha256 = "07rf8sakwssl0gn9g4d3ls2cr10zlhghz0pscrh0jc6mnprrb10i";
   };
 
   FONTCONFIG_FILE = fontsConf;
diff --git a/pkgs/development/interpreters/racket/minimal.nix b/pkgs/development/interpreters/racket/minimal.nix
index a3d4a7a3c4f..b05d449ea2f 100644
--- a/pkgs/development/interpreters/racket/minimal.nix
+++ b/pkgs/development/interpreters/racket/minimal.nix
@@ -5,7 +5,7 @@ racket.overrideAttrs (oldAttrs: rec {
   name = "racket-minimal-${oldAttrs.version}";
   src = oldAttrs.src.override {
     inherit name;
-    sha256 = "1byvg1vy8hn1j64d5gjiwzfbghdp7lhja9xwz9x8iicwfldkjybj";
+    sha256 = "0ixha4hcxlrsqjszjlr7xv6nn3mc5pb6szlbn4cq0880avakmml7";
   };
 
   meta = oldAttrs.meta // {
diff --git a/pkgs/development/libraries/armadillo/default.nix b/pkgs/development/libraries/armadillo/default.nix
index c2031f37263..a74e883dca5 100644
--- a/pkgs/development/libraries/armadillo/default.nix
+++ b/pkgs/development/libraries/armadillo/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "armadillo";
-  version = "9.700.2";
+  version = "9.800.1";
 
   src = fetchurl {
     url = "mirror://sourceforge/arma/armadillo-${version}.tar.xz";
-    sha256 = "1g88mizzkza91v51fz174gg0700f6y6snshplffpqw2gjx42ngwj";
+    sha256 = "1vnshgkz4d992kk2fwqigqfx7gx3145ryb8d2794hn2667h5gkzb";
   };
 
   nativeBuildInputs = [ cmake ];
diff --git a/pkgs/development/libraries/gdcm/default.nix b/pkgs/development/libraries/gdcm/default.nix
index 2b5dabd7abf..c3f62a5df94 100644
--- a/pkgs/development/libraries/gdcm/default.nix
+++ b/pkgs/development/libraries/gdcm/default.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchurl, cmake, vtk, darwin }:
 
 stdenv.mkDerivation rec {
-  version = "3.0.2";
+  version = "3.0.4";
   pname = "gdcm";
 
   src = fetchurl {
     url = "mirror://sourceforge/gdcm/${pname}-${version}.tar.bz2";
-    sha256 = "1kvgyci5wjsn16lwjriml10ci8h1a5ixygzcnif9c29xamxrbaif";
+    sha256 = "0g46l7fjvn37sg29m0nb7wlnnpnxmlm9ryp7vam26ni02l73paid";
   };
 
   dontUseCmakeBuildDir = true;
diff --git a/pkgs/development/libraries/intel-media-driver/default.nix b/pkgs/development/libraries/intel-media-driver/default.nix
index e3dbfa52db2..176f2809304 100644
--- a/pkgs/development/libraries/intel-media-driver/default.nix
+++ b/pkgs/development/libraries/intel-media-driver/default.nix
@@ -5,13 +5,13 @@
 
 stdenv.mkDerivation rec {
   pname = "intel-media-driver";
-  version = "19.2";
+  version = "19.3.0";
 
   src = fetchFromGitHub {
     owner  = "intel";
     repo   = "media-driver";
     rev    = "intel-media-${version}";
-    sha256 = "118cg1grzm62lppaygvh7mgxn23bicjkwjwpxhbyqs9g6yhdj3p8";
+    sha256 = "1vzh11qr7dwmi3d10nq46k754h3q1yya71nk2jgicaj2mm0ylzx6";
   };
 
   cmakeFlags = [
diff --git a/pkgs/development/libraries/leatherman/default.nix b/pkgs/development/libraries/leatherman/default.nix
index ba5dbf130b9..9e20923c244 100644
--- a/pkgs/development/libraries/leatherman/default.nix
+++ b/pkgs/development/libraries/leatherman/default.nix
@@ -2,10 +2,10 @@
 
 stdenv.mkDerivation rec {
   pname = "leatherman";
-  version = "1.7.2";
+  version = "1.8.0";
 
   src = fetchFromGitHub {
-    sha256 = "1k70fx9i4prw0vp5680ijs1ldbwd7gmvpav7jfqvpbcm3zblkc23";
+    sha256 = "0iizy20pdkbnsfj6bzrkkj7faizc85lcpkpandvnxfybiq7j60iw";
     rev = version;
     repo = "leatherman";
     owner = "puppetlabs";
diff --git a/pkgs/development/libraries/liblockfile/default.nix b/pkgs/development/libraries/liblockfile/default.nix
index aba751bae5c..bfc9036abe3 100644
--- a/pkgs/development/libraries/liblockfile/default.nix
+++ b/pkgs/development/libraries/liblockfile/default.nix
@@ -2,12 +2,12 @@
 
 stdenv.mkDerivation rec {
   _name   = "liblockfile";
-  version = "1.15";
+  version = "1.16";
   name    = "${_name}-${version}";
 
   src = fetchurl {
     url = "mirror://debian/pool/main/libl/${_name}/${_name}_${version}.orig.tar.gz";
-    sha256 = "04ml9isvdl72fbr1825x7jb680xp8aprdq4pag32ahyjqk909cmh";
+    sha256 = "0s8wj3y6mf1g47nvinkkm5avmqz0z6yxmdrnxpjwgz6krql3hvng";
   };
 
   preConfigure = ''
diff --git a/pkgs/development/libraries/libmesode/default.nix b/pkgs/development/libraries/libmesode/default.nix
index 7ec06b51e8c..de09d142d48 100644
--- a/pkgs/development/libraries/libmesode/default.nix
+++ b/pkgs/development/libraries/libmesode/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "libmesode";
-  version = "0.9.2";
+  version = "0.9.3";
 
   src = fetchFromGitHub {
     owner = "boothj5";
     repo = "libmesode";
     rev = version;
-    sha256 = "06f5nfaypvxrbsinxa1k2vrxrs7kqmg38g4wwwk5d63hpn1pj8ak";
+    sha256 = "0xzfg1xx88cn36352nnjlb1p7xyw32yqkhjzq10px88iaaqz1vv0";
   };
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];
diff --git a/pkgs/development/libraries/libplacebo/default.nix b/pkgs/development/libraries/libplacebo/default.nix
index 3fd8f86612c..eaa11d1a864 100644
--- a/pkgs/development/libraries/libplacebo/default.nix
+++ b/pkgs/development/libraries/libplacebo/default.nix
@@ -12,14 +12,14 @@
 
 stdenv.mkDerivation rec {
   pname = "libplacebo";
-  version = "1.18.0";
+  version = "1.21.0";
 
   src = fetchFromGitLab {
     domain = "code.videolan.org";
     owner = "videolan";
     repo = pname;
     rev = "v${version}";
-    sha256 = "0ib12i2491piwiz0g5n5izr5jmn5fhwzicq97vfki3r7wrdb54mz";
+    sha256 = "099qwla0yl76qw16lzdx33svyhx84p5gsa50ksy4828b18fy3bgb";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/development/libraries/mimalloc/default.nix b/pkgs/development/libraries/mimalloc/default.nix
index 728b4117676..460be100b16 100644
--- a/pkgs/development/libraries/mimalloc/default.nix
+++ b/pkgs/development/libraries/mimalloc/default.nix
@@ -7,13 +7,13 @@ let
 in
 stdenv.mkDerivation rec {
   name    = "mimalloc-${version}";
-  version = "1.0.8";
+  version = "1.1.0";
 
   src = fetchFromGitHub {
     owner  = "microsoft";
     repo   = "mimalloc";
     rev    = "refs/tags/v${version}";
-    sha256 = "04k2d3x84q2jfqdjxngy98hlw6czmigsqlf7gi3mhs6682n127r5";
+    sha256 = "1i8pwzpcmbf7dxncb984xrnczn1737xqhf1jaizlyw0k1hpiam4v";
   };
 
   nativeBuildInputs = [ cmake ];
diff --git a/pkgs/development/libraries/nlohmann_json/default.nix b/pkgs/development/libraries/nlohmann_json/default.nix
index 129cc7ed84c..3a51c2ec72b 100644
--- a/pkgs/development/libraries/nlohmann_json/default.nix
+++ b/pkgs/development/libraries/nlohmann_json/default.nix
@@ -3,13 +3,13 @@
 
 stdenv.mkDerivation rec {
   pname = "nlohmann_json";
-  version = "3.6.1";
+  version = "3.7.0";
 
   src = fetchFromGitHub {
     owner = "nlohmann";
     repo = "json";
     rev = "v${version}";
-    sha256 = "1dgx3j9pb0f52dh73z8dpwdy79bra1qi5vpl66b9inq4gamf813z";
+    sha256 = "0v7xih4zjixxxfvkfbs7a8j9qcvpwlsv4vrkbyns3hc7b44nb8ap";
   };
 
   nativeBuildInputs = [ cmake ];
@@ -18,10 +18,13 @@ stdenv.mkDerivation rec {
 
   cmakeFlags = [
     "-DBuildTests=${if doCheck then "ON" else "OFF"}"
+    "-DJSON_MultipleHeaders=ON"
   ];
 
   doCheck = stdenv.hostPlatform == stdenv.buildPlatform;
 
+  postInstall = "rm -rf $out/lib64";
+
   meta = with stdenv.lib; {
     description = "Header only C++ library for the JSON file format";
     homepage = https://github.com/nlohmann/json;
diff --git a/pkgs/development/libraries/openvdb/default.nix b/pkgs/development/libraries/openvdb/default.nix
index 3be467fdb32..483b3d788e2 100644
--- a/pkgs/development/libraries/openvdb/default.nix
+++ b/pkgs/development/libraries/openvdb/default.nix
@@ -3,13 +3,13 @@
 stdenv.mkDerivation rec
 {
   pname = "openvdb";
-  version = "6.2.0";
+  version = "6.2.1";
 
   src = fetchFromGitHub {
     owner = "dreamworksanimation";
     repo = "openvdb";
     rev = "v${version}";
-    sha256 = "0ms7jmx9nsza46bky42vyb6n6p29kfjfidqg51kccvirzi07crvq";
+    sha256 = "1ypkzdkgsbcczfvrqblnxfzm13w0mdkskgqmgvmbfi66vpaazdrf";
   };
 
   outputs = [ "out" ];
diff --git a/pkgs/development/python-modules/azure-mgmt-authorization/default.nix b/pkgs/development/python-modules/azure-mgmt-authorization/default.nix
index ef99e4e3405..994886afc70 100644
--- a/pkgs/development/python-modules/azure-mgmt-authorization/default.nix
+++ b/pkgs/development/python-modules/azure-mgmt-authorization/default.nix
@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "azure-mgmt-authorization";
-  version = "0.52.0";
+  version = "0.60.0";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "0357laxgldb7lvvws81r8xb6mrq9dwwnr1bnwdnyj4bw6p21i9hn";
+    sha256 = "19yn2ar2y8j4idzf8mxrxplxnawbk83sid3pzvzddif29aipbs1i";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix b/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix
index e768b7b6c60..0d610eebe9c 100644
--- a/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix
+++ b/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix
@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "azure-mgmt-datafactory";
-  version = "0.7.0";
+  version = "0.8.0";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "7a50da8415e316bd3be0c90ff7e2bffee2afb959aefea23b5923f22dd7094a37";
+    sha256 = "0rv3443h4f9n88ky0fkfrp6jhf7ck9w3v96q040g3c2vkkywsnwa";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/azure-mgmt-devspaces/default.nix b/pkgs/development/python-modules/azure-mgmt-devspaces/default.nix
index 5ce0f30d1f1..08cdcd72182 100644
--- a/pkgs/development/python-modules/azure-mgmt-devspaces/default.nix
+++ b/pkgs/development/python-modules/azure-mgmt-devspaces/default.nix
@@ -8,12 +8,12 @@
 
 buildPythonPackage rec {
   pname = "azure-mgmt-devspaces";
-  version = "0.1.0";
+  version = "0.2.0";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "4710dd59fc219ebfa4272dbbad58bf62093b52ce22bfd32a5c0279d2149471b5";
+    sha256 = "0dvjsr9i87j1ggbj3dcmgifpk64xr5f5ziwf7z1fwkcx0szcid7k";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/azure-mgmt-hanaonazure/default.nix b/pkgs/development/python-modules/azure-mgmt-hanaonazure/default.nix
index a0a35f5b5b5..c8b6ebfba63 100644
--- a/pkgs/development/python-modules/azure-mgmt-hanaonazure/default.nix
+++ b/pkgs/development/python-modules/azure-mgmt-hanaonazure/default.nix
@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "azure-mgmt-hanaonazure";
-  version = "0.6.0";
+  version = "0.10.0";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "1spsy6g5z4nb1y1gfz0p1ykybi76qbig8j22zvmws59329b3br5h";
+    sha256 = "01gnrhwi3nswjdxk9fjjwbyyx83agpdksrksk0c4d7bm9p2871g6";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/azure-mgmt-iothub/default.nix b/pkgs/development/python-modules/azure-mgmt-iothub/default.nix
index 61e51c4390a..cdb20167b9c 100644
--- a/pkgs/development/python-modules/azure-mgmt-iothub/default.nix
+++ b/pkgs/development/python-modules/azure-mgmt-iothub/default.nix
@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "azure-mgmt-iothub";
-  version = "0.8.2";
+  version = "0.9.0";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "0w3w1d156rnkwjdarv3qvycklxr3z2j7lry7a3jfgj3ykzny12rq";
+    sha256 = "19gcvmcd0r9xi2i3m800h3ak0mkf9yj64d55z7nrk25v3ksx0wrl";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/azure-mgmt-network/default.nix b/pkgs/development/python-modules/azure-mgmt-network/default.nix
index a94cd58136d..452d4e48cf4 100644
--- a/pkgs/development/python-modules/azure-mgmt-network/default.nix
+++ b/pkgs/development/python-modules/azure-mgmt-network/default.nix
@@ -7,13 +7,13 @@
 }:
 
 buildPythonPackage rec {
-  version = "5.0.0";
+  version = "6.0.0";
   pname = "azure-mgmt-network";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "03ymxm3ryhgh4f1pw00fiyb3lxv2w6nkvn8xnj91h8xdd34flqzc";
+    sha256 = "07ak0qqa0fw79mrwpf4isfirrsv1simggi5hfrn856vngrszcx84";
   };
 
   postInstall = if isPy3k then "" else ''
diff --git a/pkgs/development/python-modules/azure-mgmt-reservations/default.nix b/pkgs/development/python-modules/azure-mgmt-reservations/default.nix
index fe2a4dac402..cc19e904863 100644
--- a/pkgs/development/python-modules/azure-mgmt-reservations/default.nix
+++ b/pkgs/development/python-modules/azure-mgmt-reservations/default.nix
@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "azure-mgmt-reservations";
-  version = "0.3.2";
+  version = "0.5.0";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "0nksxjh5kh09dr0zw667fg8mzik4ymvfq3dipwag6pynbqr9ls4l";
+    sha256 = "06l362xiqhk8vvb1pch6ngfyv8m00ahr6ysdznd6qvxz8awazy10";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/azure-mgmt-sql/default.nix b/pkgs/development/python-modules/azure-mgmt-sql/default.nix
index 4a2fe93e6f8..5ad1e620ede 100644
--- a/pkgs/development/python-modules/azure-mgmt-sql/default.nix
+++ b/pkgs/development/python-modules/azure-mgmt-sql/default.nix
@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "azure-mgmt-sql";
-  version = "0.13.0";
+  version = "0.14.0";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "184jma28nyn4c52mjj0g0p6rci6kajsdjqy8mbdaisphpjl4f77l";
+    sha256 = "109w1kj45fvwc94bkhdkj3bdysrskfz8i6ph4qlpjk340zy81vvl";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/azure-mgmt-storage/default.nix b/pkgs/development/python-modules/azure-mgmt-storage/default.nix
index 44d5f231115..ad17f1bf5bd 100644
--- a/pkgs/development/python-modules/azure-mgmt-storage/default.nix
+++ b/pkgs/development/python-modules/azure-mgmt-storage/default.nix
@@ -7,13 +7,13 @@
 }:
 
 buildPythonPackage rec {
-  version = "4.1.0";
+  version = "4.2.0";
   pname = "azure-mgmt-storage";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "1src3ki3xd8x0m6vmxig6y4lg7w4mg0sz6vmnsxdk8mxaird03jj";
+    sha256 = "02a7f5vpaypr2lrayay4i9m7sf7d6galqwjz5wj549vq85jdq5ny";
   };
 
   postInstall = if isPy3k then "" else ''
diff --git a/pkgs/development/python-modules/azure-mgmt-subscription/default.nix b/pkgs/development/python-modules/azure-mgmt-subscription/default.nix
index 962add966a5..92dcc7cd952 100644
--- a/pkgs/development/python-modules/azure-mgmt-subscription/default.nix
+++ b/pkgs/development/python-modules/azure-mgmt-subscription/default.nix
@@ -10,12 +10,12 @@
 
 buildPythonPackage rec {
   pname = "azure-mgmt-subscription";
-  version = "0.3.0";
+  version = "0.5.0";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "7a095fe46e598210b178e1059bba82eb02f3b8a7f44f3791442ff7d9ff323d2b";
+    sha256 = "1w91zqi2icld76mcrz0kwq0adb1nr83yqdq6qp1p1445p914qjsh";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/azure-servicefabric/default.nix b/pkgs/development/python-modules/azure-servicefabric/default.nix
index b07a34f5bde..79d303a4652 100644
--- a/pkgs/development/python-modules/azure-servicefabric/default.nix
+++ b/pkgs/development/python-modules/azure-servicefabric/default.nix
@@ -7,12 +7,12 @@
 
 buildPythonPackage rec {
   pname = "azure-servicefabric";
-  version = "6.4.0.0";
+  version = "6.5.0.0";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "f049e8c4a179f1277f2ec60158f88caf14a50f7df491fc6841e360cd61746da1";
+    sha256 = "02q32rc3vmg3kpi92s2y2ic47s3mi9qjcvzvrpjdlzji8lhd9w45";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/development/python-modules/magic-wormhole-transit-relay/default.nix b/pkgs/development/python-modules/magic-wormhole-transit-relay/default.nix
index 5ddece686fa..d6e3ac2b153 100644
--- a/pkgs/development/python-modules/magic-wormhole-transit-relay/default.nix
+++ b/pkgs/development/python-modules/magic-wormhole-transit-relay/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "magic-wormhole-transit-relay";
-  version = "0.1.2";
+  version = "0.2.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b13f1bfab295150b25958014d93fcd9f744d92011d186d7381575465587b8587";
+    sha256 = "0ppsx2s1ysikns1h053x67z2zmficbn3y3kf52bzzslhd2s02j6b";
   };
 
   propagatedBuildInputs = [ twisted ];
diff --git a/pkgs/development/python-modules/papis/default.nix b/pkgs/development/python-modules/papis/default.nix
index b2ae7cf73ed..a2fd5118b3e 100644
--- a/pkgs/development/python-modules/papis/default.nix
+++ b/pkgs/development/python-modules/papis/default.nix
@@ -2,22 +2,23 @@
 , requests, filetype, pyparsing, configparser, arxiv2bib
 , pyyaml, chardet, beautifulsoup4, colorama, bibtexparser
 , pylibgen, click, python-slugify, habanero, isbnlib
-, prompt_toolkit, pygments
+, prompt_toolkit, pygments, stevedore, tqdm, lxml
+, python-doi, isPy3k
 #, optional, dependencies
-, jinja2, whoosh, pytest
+, whoosh, pytest
 , stdenv
 }:
 
 buildPythonPackage rec {
   pname = "papis";
-  version = "0.8.2";
+  version = "0.9";
 
   # Missing tests on Pypi
   src = fetchFromGitHub {
     owner = "papis";
     repo = pname;
     rev = "v${version}";
-    sha256 = "0sa4hpgjvqkjcmp9bjr27b5m5jg4pfspdc8nf1ny80sr0kzn72hb";
+    sha256 = "kzA8nlglbjHDPEB7HRAY2dza1Umn/OYUu+ydbA1OJ5Y=";
   };
 
   propagatedBuildInputs = [
@@ -25,10 +26,14 @@ buildPythonPackage rec {
     pyyaml chardet beautifulsoup4 colorama bibtexparser
     pylibgen click python-slugify habanero isbnlib
     prompt_toolkit pygments
+    stevedore tqdm lxml
+    python-doi
     # optional dependencies
-    jinja2 whoosh
+    whoosh
   ];
 
+  disabled = !isPy3k;
+
   doCheck = !stdenv.isDarwin;
 
   checkInputs = ([
@@ -42,7 +47,8 @@ buildPythonPackage rec {
   # fail with 5.x
   checkPhase = ''
     HOME=$(mktemp -d) pytest papis tests --ignore tests/downloaders \
-      -k "not test_get_data and not test_doi_to_data and not test_general and not get_document_url and not test_export_yaml and not test_citations"
+      -k "not test_get_data and not test_doi_to_data and not test_general and not get_document_url \
+      and not test_validate_arxivid and not test_downloader_getter"
   '';
 
   meta = {
diff --git a/pkgs/development/python-modules/pip2nix/default.nix b/pkgs/development/python-modules/pip2nix/default.nix
index 0e648f1ca18..8854e7d5678 100644
--- a/pkgs/development/python-modules/pip2nix/default.nix
+++ b/pkgs/development/python-modules/pip2nix/default.nix
@@ -6,6 +6,7 @@
 , contexter
 , jinja2
 , pytest
+, pip
 }:
 
 buildPythonPackage rec {
@@ -17,7 +18,7 @@ buildPythonPackage rec {
     sha256 = "ec9a71e09ac7f43cc7b6c9d386384eb7b5c331bf6ea0e72ca559d87979397a95";
   };
 
-  propagatedBuildInputs = [ click configobj contexter jinja2 pytest ];
+  propagatedBuildInputs = [ click configobj contexter pip jinja2 pytest ];
 
   postPatch = ''
     sed -i "s/'pip>=8,<10'/'pip'/" setup.py
@@ -27,6 +28,9 @@ buildPythonPackage rec {
   # tests not included with pypi release
   doCheck = false;
 
+  # Requires an old pip version
+  broken = true;
+
   meta = with stdenv.lib; {
     description = "Generate Nix expressions for Python packages";
     homepage = https://github.com/johbo/pip2nix;
diff --git a/pkgs/development/python-modules/python-doi/default.nix b/pkgs/development/python-modules/python-doi/default.nix
new file mode 100644
index 00000000000..0cb6b2a7502
--- /dev/null
+++ b/pkgs/development/python-modules/python-doi/default.nix
@@ -0,0 +1,21 @@
+{ stdenv, buildPythonPackage, fetchFromGitHub, isPy3k }:
+
+buildPythonPackage rec {
+  pname = "python-doi";
+  version = "0.1.1";
+
+  src = fetchFromGitHub {
+    owner = "papis";
+    repo = "python-doi";
+    rev = "v${version}";
+    sha256 = "1wa5inh2a0drjswrnhjv6m23mvbfdgqj2jb8fya7q0armzp7l6fr";
+  };
+
+  disabled = !isPy3k;
+
+  meta = with stdenv.lib; {
+    description = "Python library to work with Document Object Identifiers (doi)";
+    homepage = https://github.com/alejandrogallo/python-doi;
+    maintainers = with maintainers; [ teto ];
+  };
+}
diff --git a/pkgs/development/tools/analysis/flow/default.nix b/pkgs/development/tools/analysis/flow/default.nix
index 752a750f26e..f3dd54ac121 100644
--- a/pkgs/development/tools/analysis/flow/default.nix
+++ b/pkgs/development/tools/analysis/flow/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "flow";
-  version = "0.109.0";
+  version = "0.110.0";
 
   src = fetchFromGitHub {
     owner  = "facebook";
     repo   = "flow";
     rev    = "refs/tags/v${version}";
-    sha256 = "0wfhy7r85s2bxhfkmcdp7p1gaqjxr4yzay52k680hv6ghhay2318";
+    sha256 = "0w0z4pgwwvi12kvfg5xdjc83qw030a0c58cgr5rz3xzw2pgbdfm2";
   };
 
   installPhase = ''
diff --git a/pkgs/development/tools/analysis/tflint/default.nix b/pkgs/development/tools/analysis/tflint/default.nix
index 342600c7caa..2e07542d5f9 100644
--- a/pkgs/development/tools/analysis/tflint/default.nix
+++ b/pkgs/development/tools/analysis/tflint/default.nix
@@ -2,16 +2,16 @@
 
 buildGoModule rec {
   pname = "tflint";
-  version = "0.12.0";
+  version = "0.12.1";
 
   src = fetchFromGitHub {
     owner = "wata727";
     repo = pname;
     rev = "v${version}";
-    sha256 = "1dma1nav6z9919lj4f7cqcf8h12l4gbwn24323y18l57zv988331";
+    sha256 = "1vwv6gkzrs5nv5a278siwza2ifwqy08rmcdddx275crcjkz3bv53";
   };
 
-  modSha256 = "1xjxaszpxv9k9s27y1i54cnp0ip47bq4ad2ziq7n8nb76zxw03mx";
+  modSha256 = "048mh6zr1fkz5bcxg27d0s472ig9xcq0zgbqpxspkvkdxxw9iizf";
 
   subPackages = [ "." ];
 
diff --git a/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix b/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix
index fbb7461bbc7..829636e06d2 100644
--- a/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix
+++ b/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix
@@ -1,16 +1,16 @@
 { lib, buildGoPackage, fetchFromGitLab, fetchurl }:
 
 let
-  version = "12.3.0";
+  version = "12.4.0";
   # Gitlab runner embeds some docker images these are prebuilt for arm and x86_64
   docker_x86_64 = fetchurl {
     url = "https://gitlab-runner-downloads.s3.amazonaws.com/v${version}/helper-images/prebuilt-x86_64.tar.xz";
-    sha256 = "11xbz24811vi3l1dwhyqv3mypawrky85qjsg6aaigfv8zj9l2xmi";
+    sha256 = "0x0i60l8w3iwf7kn1wi8hh87cc3rvxixi2bizd5807aw22g9z5pd";
   };
 
   docker_arm = fetchurl {
     url = "https://gitlab-runner-downloads.s3.amazonaws.com/v${version}/helper-images/prebuilt-arm.tar.xz";
-    sha256 = "04gfhlm32wrdq0s9blmfknpcnmr30vrnd7afib1lfbzbdl99g4sx";
+    sha256 = "1a2z2m4c2cixibjgh6xv9yi760n10v374nb9jl2pf62rlpqkwz83";
   };
 in
 buildGoPackage rec {
@@ -29,7 +29,7 @@ buildGoPackage rec {
     owner = "gitlab-org";
     repo = "gitlab-runner";
     rev = "v${version}";
-    sha256 = "155im9sybkldh0rx34j9fm3qg95dm5q3jcjjx635b7fwq1wyl7c7";
+    sha256 = "0sdf3w5iq08dyhn2b9rz0sssxq4yfbki2z834z5l02wzjl8h2nk6";
   };
 
   patches = [ ./fix-shell-path.patch ];
diff --git a/pkgs/development/tools/ktlint/default.nix b/pkgs/development/tools/ktlint/default.nix
index c98d397953e..76be5e60c53 100644
--- a/pkgs/development/tools/ktlint/default.nix
+++ b/pkgs/development/tools/ktlint/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "ktlint";
-  version = "0.34.2";
+  version = "0.35.0";
 
   src = fetchurl {
     url = "https://github.com/shyiko/ktlint/releases/download/${version}/ktlint";
-    sha256 = "1v1s4y8ads2s8hjsjacxni1j0dbmnhilhnfs0xabr3aljqs15wb2";
+    sha256 = "0zj18wcapnqny7k4wvwkyjfds6l2f4y22w6a84k06rzih2ghv0gm";
   };
 
   nativeBuildInputs = [ makeWrapper ];
diff --git a/pkgs/development/tools/misc/lttng-tools/default.nix b/pkgs/development/tools/misc/lttng-tools/default.nix
index 17837a54877..a02bb2c9f2f 100644
--- a/pkgs/development/tools/misc/lttng-tools/default.nix
+++ b/pkgs/development/tools/misc/lttng-tools/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "lttng-tools";
-  version = "2.10.7";
+  version = "2.10.8";
 
   src = fetchurl {
     url = "https://lttng.org/files/lttng-tools/${pname}-${version}.tar.bz2";
-    sha256 = "04hkga0hnyjmv42mxj3njaykqmq9x4abd5qfyds5r62x1khfnwgd";
+    sha256 = "03dkwvmiqbr7dcnrk8hw8xd9i0vrx6xxz8wal56mfypxz52i2jk6";
   };
 
   nativeBuildInputs = [ pkgconfig ];
diff --git a/pkgs/development/tools/pipenv/default.nix b/pkgs/development/tools/pipenv/default.nix
index cb8e61e119d..1b4815a8687 100644
--- a/pkgs/development/tools/pipenv/default.nix
+++ b/pkgs/development/tools/pipenv/default.nix
@@ -1,6 +1,7 @@
 { lib
 , buildPythonApplication
-, flake8
+, certifi
+, setuptools
 , invoke
 , parver
 , pip
@@ -21,23 +22,18 @@ buildPythonApplication rec {
 
   LC_ALL = "en_US.UTF-8";
 
+  nativeBuildInputs = [ invoke parver ];
+
   propagatedBuildInputs = [
-    flake8
-    invoke
-    parver
+    certifi
+    setuptools
     pip
-    requests
     virtualenv
     virtualenv-clone
   ];
 
   doCheck = false;
 
-  makeWrapperArgs = [
-    "--set PYTHONPATH \".:$PYTHONPATH\""
-    "--set PIP_IGNORE_INSTALLED 1"
-  ];
-
   meta = with lib; {
     description = "Python Development Workflow for Humans";
     license = licenses.mit;
diff --git a/pkgs/os-specific/linux/health-check/default.nix b/pkgs/os-specific/linux/health-check/default.nix
index c90029907c0..c6dc7bf66e2 100644
--- a/pkgs/os-specific/linux/health-check/default.nix
+++ b/pkgs/os-specific/linux/health-check/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "health-check";
-  version = "0.03.02";
+  version = "0.03.03";
 
   src = fetchurl {
     url = "https://kernel.ubuntu.com/~cking/tarballs/${pname}/${pname}-${version}.tar.gz";
-    sha256 = "12n2qp5lrlahkgrkwy3mjm0nscz6yhhh80z4xmd2n96pn8f3d4hh";
+    sha256 = "1bvgfzmvbqqhf1ailbwrsma6sbp5wcl6a35pb1n0y1n1p1hnqzph";
   };
 
   buildInputs = [ json_c libbsd ];
diff --git a/pkgs/servers/home-assistant/default.nix b/pkgs/servers/home-assistant/default.nix
index ee07ff8ad46..6761c23832a 100644
--- a/pkgs/servers/home-assistant/default.nix
+++ b/pkgs/servers/home-assistant/default.nix
@@ -154,6 +154,6 @@ in with py.pkgs; buildPythonApplication rec {
     homepage = https://home-assistant.io/;
     description = "Open-source home automation platform running on Python 3";
     license = licenses.asl20;
-    maintainers = with maintainers; [ fleaz dotlambda globin ];
+    maintainers = with maintainers; [ dotlambda globin ];
   };
 }
diff --git a/pkgs/servers/icingaweb2/default.nix b/pkgs/servers/icingaweb2/default.nix
index 9cdfd8d2b33..c4aaedf4ab6 100644
--- a/pkgs/servers/icingaweb2/default.nix
+++ b/pkgs/servers/icingaweb2/default.nix
@@ -1,12 +1,12 @@
 { stdenv, lib, fetchFromGitHub, makeWrapper, php }: with lib; stdenv.mkDerivation rec {
   pname = "icingaweb2";
-  version = "2.7.1";
+  version = "2.7.3";
 
   src = fetchFromGitHub {
     owner = "Icinga";
     repo = "icingaweb2";
     rev = "v${version}";
-    sha256 = "1awf0j4vlm9v7bsfk5a168446k7pa54yqc0k6phlaw772874g917";
+    sha256 = "1qdsrpk6jbq9b4v4f2lfpdqs1yh3irbsm5fx02wxnnwvad05bcfv";
   };
 
   nativeBuildInputs = [ makeWrapper ];
diff --git a/pkgs/servers/lidarr/default.nix b/pkgs/servers/lidarr/default.nix
index e70fc685161..915e4233ebe 100644
--- a/pkgs/servers/lidarr/default.nix
+++ b/pkgs/servers/lidarr/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, mono, libmediainfo, sqlite, curl, makeWrapper }:
+{ stdenv, fetchurl, mono, libmediainfo, sqlite, curl, chromaprint, makeWrapper }:
 
 stdenv.mkDerivation rec {
   pname = "lidarr";
@@ -9,9 +9,7 @@ stdenv.mkDerivation rec {
     sha256 = "1vk1rlsb48ckdc4421a2qs0v5gy7kc4fad24dm3k14znh7llwypr";
   };
 
-  buildInputs = [
-    makeWrapper
-  ];
+  nativeBuildInputs = [ makeWrapper ];
 
   installPhase = ''
     mkdir -p $out/bin
@@ -22,6 +20,7 @@ stdenv.mkDerivation rec {
 
     makeWrapper "${mono}/bin/mono" $out/bin/Lidarr \
       --add-flags "$out/bin/Lidarr.exe" \
+      --prefix PATH : ${stdenv.lib.makeBinPath [ chromaprint ]} \
       --prefix LD_LIBRARY_PATH : ${stdenv.lib.makeLibraryPath [
           curl sqlite libmediainfo ]}
   '';
diff --git a/pkgs/servers/memcached/default.nix b/pkgs/servers/memcached/default.nix
index bd1acd36278..9e7550a7171 100644
--- a/pkgs/servers/memcached/default.nix
+++ b/pkgs/servers/memcached/default.nix
@@ -1,12 +1,12 @@
 {stdenv, fetchurl, cyrus_sasl, libevent}:
 
 stdenv.mkDerivation rec {
-  version = "1.5.18";
+  version = "1.5.19";
   pname = "memcached";
 
   src = fetchurl {
     url = "https://memcached.org/files/${pname}-${version}.tar.gz";
-    sha256 = "127g4l0ilb376dpgz6qby24vc72ban35c938dzmp1nh6bdqddgcy";
+    sha256 = "1q2bb858iwc1jncav5vfl8c7dic9r1wqni5724qmy8ads6idmp1x";
   };
 
   configureFlags = [
diff --git a/pkgs/servers/nosql/apache-jena/fuseki-binary.nix b/pkgs/servers/nosql/apache-jena/fuseki-binary.nix
index 641220e1344..05153a7f859 100644
--- a/pkgs/servers/nosql/apache-jena/fuseki-binary.nix
+++ b/pkgs/servers/nosql/apache-jena/fuseki-binary.nix
@@ -3,10 +3,10 @@ let
   s = # Generated upstream information
   rec {
     baseName="apache-jena-fuseki";
-    version = "3.12.0";
+    version = "3.13.1";
     name="${baseName}-${version}";
     url="http://archive.apache.org/dist/jena/binaries/apache-jena-fuseki-${version}.tar.gz";
-    sha256 = "1j2p3r4vgp4l2xrrsh5mx3vbgq03c0vdg6961g1fvd307yqpibk0";
+    sha256 = "018b07icvjhd44c046rxfjiczcs63cic77cymgg4w8pd3na06c7y";
   };
   buildInputs = [
     makeWrapper
diff --git a/pkgs/servers/plex/raw.nix b/pkgs/servers/plex/raw.nix
index 197b1699749..67d6e954f9e 100644
--- a/pkgs/servers/plex/raw.nix
+++ b/pkgs/servers/plex/raw.nix
@@ -8,13 +8,13 @@
 # server, and the FHS userenv and corresponding NixOS module should
 # automatically pick up the changes.
 stdenv.mkDerivation rec {
-  version = "1.17.0.1841-d42cfa161";
+  version = "1.18.0.1944-f2cae8d6b";
   pname = "plexmediaserver";
 
   # Fetch the source
   src = fetchurl {
     url = "https://downloads.plex.tv/plex-media-server-new/${version}/redhat/plexmediaserver-${version}.x86_64.rpm";
-    sha256 = "1sa3a8i204qq1hsg0dsa3f6vpsbyny88y3bskf6ljsz87c6g9kmh";
+    sha256 = "1yq926j817aqngq5n8gjpcq5pr8lc5mi3xff1r834vkym1i5nz7q";
   };
 
   outputs = [ "out" "basedb" ];
diff --git a/pkgs/servers/search/groonga/default.nix b/pkgs/servers/search/groonga/default.nix
index 669901d7625..59affd09295 100644
--- a/pkgs/servers/search/groonga/default.nix
+++ b/pkgs/servers/search/groonga/default.nix
@@ -7,11 +7,11 @@
 stdenv.mkDerivation rec {
 
   pname = "groonga";
-  version = "9.0.7";
+  version = "9.0.8";
 
   src = fetchurl {
     url    = "https://packages.groonga.org/source/groonga/${pname}-${version}.tar.gz";
-    sha256 = "1j308p6l6q716qlk3azqk9v11a93cxhcppj7qh5wm2aqsngw9rfq";
+    sha256 = "1fcagm0hzfl9jvn9afzhaahphvq3mc7d7s1s7hhinpv7bsr3xdl5";
   };
 
   buildInputs = with stdenv.lib;
diff --git a/pkgs/servers/sonarr/default.nix b/pkgs/servers/sonarr/default.nix
index 7b80b021bde..7a546d5813c 100644
--- a/pkgs/servers/sonarr/default.nix
+++ b/pkgs/servers/sonarr/default.nix
@@ -9,9 +9,7 @@ stdenv.mkDerivation rec {
     sha256 = "05l7l4d1765m01c14iz8lcr61dnm4xd5p09sns4w8wmanks9jg3x";
   };
 
-  buildInputs = [
-    makeWrapper
-  ];
+  nativeBuildInputs = [ makeWrapper ];
 
   installPhase = ''
     mkdir -p $out/bin
diff --git a/pkgs/tools/backup/bup/default.nix b/pkgs/tools/backup/bup/default.nix
index 3ff7aed74f5..4788091a5f4 100644
--- a/pkgs/tools/backup/bup/default.nix
+++ b/pkgs/tools/backup/bup/default.nix
@@ -5,7 +5,7 @@
 
 assert par2Support -> par2cmdline != null;
 
-let version = "0.29.3"; in
+let version = "0.30"; in
 
 with stdenv.lib;
 
@@ -17,7 +17,7 @@ stdenv.mkDerivation {
     repo = "bup";
     owner = "bup";
     rev = version;
-    sha256 = "1b5ynljd9gs1vzbsa0kggw32s3r4zhbprc2clvjm5qmvnx23hxh8";
+    sha256 = "0kzi9mzgmx1kjv3aldawapz7bk73f02bysiwh8rngqnirmm0vxdp";
   };
 
   buildInputs = [
diff --git a/pkgs/applications/misc/cdrtools/default.nix b/pkgs/tools/cd-dvd/cdrtools/default.nix
similarity index 58%
rename from pkgs/applications/misc/cdrtools/default.nix
rename to pkgs/tools/cd-dvd/cdrtools/default.nix
index 20bfe727f6d..f4f07143a20 100644
--- a/pkgs/applications/misc/cdrtools/default.nix
+++ b/pkgs/tools/cd-dvd/cdrtools/default.nix
@@ -1,33 +1,33 @@
-{ stdenv, fetchurl, acl, libcap, Carbon, IOKit }:
+{ stdenv, fetchurl, m4, acl, libcap, Carbon, IOKit }:
 
 stdenv.mkDerivation rec {
   pname = "cdrtools";
-  version = "3.02a06";
+  version = "3.02a09";
 
   src = fetchurl {
     url = "mirror://sourceforge/cdrtools/${pname}-${version}.tar.bz2";
-    sha256 = "1cayhfbhj5g2vgmkmq5scr23k0ka5fsn0dhn0n9yllj386csnygd";
+    sha256 = "10ayj48jax2pvsv6j5gybwfsx7b74zdjj84znwag7wwf8n7l6a5a";
   };
 
-  patches = [ ./fix-paths.patch ];
-
+  nativeBuildInputs = [ m4 ];
   buildInputs = if stdenv.isDarwin then [ Carbon IOKit ] else [ acl libcap ];
 
   postPatch = ''
     sed "/\.mk3/d" -i libschily/Targets.man
     substituteInPlace man/Makefile --replace "man4" ""
+    substituteInPlace RULES/rules.prg --replace "/bin/" ""
   '';
 
   dontConfigure = true;
 
-  GMAKE_NOWARN = true;
+  makeFlags = [ "GMAKE_NOWARN=true" "INS_BASE=/" "INS_RBASE=/" "DESTDIR=${placeholder "out"}" ];
 
-  makeFlags = [ "INS_BASE=/" "INS_RBASE=/" "DESTDIR=$(out)" ];
+  enableParallelBuilding = false; # parallel building fails on some linux machines
 
   meta = with stdenv.lib; {
-    homepage = https://sourceforge.net/projects/cdrtools/;
+    homepage = "http://cdrtools.sourceforge.net/private/cdrecord.html";
     description = "Highly portable CD/DVD/BluRay command line recording software";
-    license = with licenses; [ gpl2 lgpl2 cddl ];
+    license = with licenses; [ cddl gpl2 lgpl21 ];
     platforms = with platforms; linux ++ darwin;
     # Licensing issues: This package contains code licensed under CDDL, GPL2
     # and LGPL2. There is a debate regarding the legality of distributing this
diff --git a/pkgs/tools/cd-dvd/dvd+rw-tools/default.nix b/pkgs/tools/cd-dvd/dvd+rw-tools/default.nix
index 40ca08c9260..40925a14537 100644
--- a/pkgs/tools/cd-dvd/dvd+rw-tools/default.nix
+++ b/pkgs/tools/cd-dvd/dvd+rw-tools/default.nix
@@ -1,38 +1,41 @@
-{stdenv, fetchurl, cdrkit, m4}:
+{ stdenv, fetchurl, fetchpatch, cdrtools, m4 }:
 
-stdenv.mkDerivation {
-  name = "dvd+rw-tools-7.1";
+stdenv.mkDerivation rec {
+  pname = "dvd+rw-tools";
+  version = "7.1";
 
   src = fetchurl {
-    url = http://fy.chalmers.se/~appro/linux/DVD+RW/tools/dvd+rw-tools-7.1.tar.gz;
+    url = "http://fy.chalmers.se/~appro/linux/DVD+RW/tools/${pname}-${version}.tar.gz";
     sha256 = "1jkjvvnjcyxpql97xjjx0kwvy70kxpiznr2zpjy2hhci5s10zmpq";
   };
 
-  # Patches from Gentoo / Fedora
-  # https://bugs.gentoo.org/257360
-  # https://bugzilla.redhat.com/show_bug.cgi?id=426068
-  # https://bugzilla.redhat.com/show_bug.cgi?id=243036
-  patches = [
-    ./dvd+rw-tools-7.0-dvddl.patch
-    ./dvd+rw-tools-7.0-glibc2.6.90.patch
-    ./dvd+rw-tools-7.0-wctomb.patch
-    ./dvd+rw-tools-7.0-wexit.patch
-    ./dvd+rw-tools-7.1-layerbreaksetup.patch
-  ];
+  # Patches from Gentoo
+  patches = [ ]
+  ++ builtins.map ({pfile, sha256}: fetchpatch {
+       url = "https://gitweb.gentoo.org/repo/gentoo.git/plain/app-cdr/dvd+rw-tools/files/${pfile}?id=b510df361241e8f16314b1f14642305f0111dac6";
+       inherit sha256;
+     })
+     [{ pfile = "dvd+rw-tools-7.0-dvddl-r1.patch"; sha256 = "12l33jq6405shfwdycrj52qmd07h5bsp1vjaddknfri456azjny5"; }
+      { pfile = "dvd+rw-tools-7.0-glibc2.6.90.patch"; sha256 = "1fb3gap2in782pa4164h1w0ha8ggsq3inissa1k0zn2p2r3rb5ln"; }
+      { pfile = "dvd+rw-tools-7.0-reload.patch"; sha256 = "12v2y2y6ci5hh6lbmsk97dzgznrm4bxwhc81mq684ix0qspb9mq4"; }
+      { pfile = "dvd+rw-tools-7.0-sysmacros.patch"; sha256 = "1rkb26cyhfxklkmna3l9b4797f6gzlxyqqin44jwnq3jmwfrs6v0"; }
+      { pfile = "dvd+rw-tools-7.0-wctomb-r1.patch"; sha256 = "1xg770l0b4bjn30y7nqg619v4m5ickcn2n8hv9k2an6r191daq58"; }
+      { pfile = "dvd+rw-tools-7.0-wexit.patch"; sha256 = "0sqzlkm19fmjx4lzxkxwn2ymrj9fq0zk0jkys3xm6xvd2ibb6kxl"; }
+      { pfile = "dvd+rw-tools-7.1-bluray_pow_freespace.patch"; sha256 = "0iscz8fs5002ymk6wl2fz4x06b7bdnc57rfz8kbv3216acqi5rv3"; }
+      { pfile = "dvd+rw-tools-7.1-bluray_srm+pow.patch"; sha256 = "0sy40m12w987i6g0cyxv8cfmab4vp7cd222lv05apknfi2y7smmw"; }
+      { pfile = "dvd+rw-tools-7.1-lastshort.patch"; sha256 = "01wspv70sil20khkg5kj086b1x8rrig4yhcq9s88bdjd42nv0vpx"; }
+      { pfile = "dvd+rw-tools-7.1-noevent.patch"; sha256 = "1kbmxpg15wci33f2h6pxxvf3qm0kpyzx9wj5a3l67sk34hvza3z6"; }
+     ];
 
-  buildInputs = [cdrkit m4];
+  nativeBuildInputs = [ m4 ];
+  buildInputs = [ cdrtools ];
 
-  preBuild = ''
-    makeFlags="prefix=$out"
-  '';
+  makeFlags = [ "prefix=${placeholder "out"}" ];
 
-  # Incompatibility with Linux 2.6.23 headers, see
-  # http://www.mail-archive.com/cdwrite@other.debian.org/msg11464.html
-  NIX_CFLAGS_COMPILE = "-DINT_MAX=__INT_MAX__";
-
-  meta = {
-    homepage = http://fy.chalmers.se/~appro/linux/DVD+RW/tools;
-    description = "Tools for burning DVDs";
-    platforms = stdenv.lib.platforms.linux;
+  meta = with stdenv.lib; {
+    homepage = "http://fy.chalmers.se/~appro/linux/DVD+RW/tools";
+    description = "Tools for mastering Blu-ray and DVD+-RW/+-R media";
+    platforms = platforms.linux;
+    license = with licenses; [ gpl2 publicDomain ];
   };
 }
diff --git a/pkgs/tools/cd-dvd/dvd+rw-tools/dvd+rw-tools-7.0-dvddl.patch b/pkgs/tools/cd-dvd/dvd+rw-tools/dvd+rw-tools-7.0-dvddl.patch
deleted file mode 100644
index c1c6fb3332a..00000000000
--- a/pkgs/tools/cd-dvd/dvd+rw-tools/dvd+rw-tools-7.0-dvddl.patch
+++ /dev/null
@@ -1,13 +0,0 @@
---- ./growisofs_mmc.cpp.joe	2006-04-27 20:45:00.788446635 +0200
-+++ ./growisofs_mmc.cpp	2006-04-27 20:46:01.666824300 +0200
-@@ -1412,9 +1412,7 @@
-     blocks += 15, blocks &= ~15;
- 
-     if (blocks <= split)
--	fprintf (stderr,":-( more than 50%% of space will be *wasted*!\n"
--			"    use single layer media for this recording\n"),
--	exit (FATAL_START(EMEDIUMTYPE));
-+	fprintf (stderr,":-? more than 50%% of space will be *wasted*!\n");
- 
-     blocks /= 16;
-     blocks += 1;
diff --git a/pkgs/tools/cd-dvd/dvd+rw-tools/dvd+rw-tools-7.0-glibc2.6.90.patch b/pkgs/tools/cd-dvd/dvd+rw-tools/dvd+rw-tools-7.0-glibc2.6.90.patch
deleted file mode 100644
index 49742d3c4db..00000000000
--- a/pkgs/tools/cd-dvd/dvd+rw-tools/dvd+rw-tools-7.0-glibc2.6.90.patch
+++ /dev/null
@@ -1,11 +0,0 @@
-diff -up dvd+rw-tools-7.0/transport.hxx.glibc2.6.90 dvd+rw-tools-7.0/transport.hxx
---- dvd+rw-tools-7.0/transport.hxx.glibc2.6.90	2007-08-15 12:56:17.000000000 +0200
-+++ dvd+rw-tools-7.0/transport.hxx	2007-08-15 12:56:42.000000000 +0200
-@@ -11,6 +11,7 @@
- #include <stdlib.h>
- #include <unistd.h>
- #include <string.h>
-+#include <limits.h>
- #include <sys/types.h>
- #include <sys/stat.h>
- #include <fcntl.h>
diff --git a/pkgs/tools/cd-dvd/dvd+rw-tools/dvd+rw-tools-7.0-wctomb.patch b/pkgs/tools/cd-dvd/dvd+rw-tools/dvd+rw-tools-7.0-wctomb.patch
deleted file mode 100644
index 3d13fc8d273..00000000000
--- a/pkgs/tools/cd-dvd/dvd+rw-tools/dvd+rw-tools-7.0-wctomb.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- ./transport.hxx~	2008-03-25 21:24:47.000000000 -0400
-+++ ./transport.hxx	2008-03-25 21:25:36.000000000 -0400
-@@ -116,7 +116,7 @@
- extern "C" char *plusminus_locale()
- { static class __plusminus {
-     private:
--	char str[4];
-+	char str[MB_LEN_MAX];
-     public:
- 	__plusminus()	{   setlocale(LC_CTYPE,ENV_LOCALE);
- 			    int l = wctomb(str,(wchar_t)(unsigned char)'±');
diff --git a/pkgs/tools/cd-dvd/dvd+rw-tools/dvd+rw-tools-7.0-wexit.patch b/pkgs/tools/cd-dvd/dvd+rw-tools/dvd+rw-tools-7.0-wexit.patch
deleted file mode 100644
index e7910cbdd7b..00000000000
--- a/pkgs/tools/cd-dvd/dvd+rw-tools/dvd+rw-tools-7.0-wexit.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- dvd+rw-tools-7.0/dvd+rw-format.cpp.wexit	2007-06-21 12:42:30.000000000 +0200
-+++ dvd+rw-tools-7.0/dvd+rw-format.cpp	2007-06-21 12:44:13.000000000 +0200
-@@ -245,7 +245,7 @@ int main (int argc, char *argv[])
- 	alarm(1);
- 	while ((waitpid(pid,&i,0) != pid) && !WIFEXITED(i)) ;
- 	if (WEXITSTATUS(i) == 0) fprintf (stderr,"\n");
--	exit (0);
-+	exit (WEXITSTATUS(i));
-     }
- #endif
- 
diff --git a/pkgs/tools/cd-dvd/dvd+rw-tools/dvd+rw-tools-7.1-layerbreaksetup.patch b/pkgs/tools/cd-dvd/dvd+rw-tools/dvd+rw-tools-7.1-layerbreaksetup.patch
deleted file mode 100644
index 7636f8393df..00000000000
--- a/pkgs/tools/cd-dvd/dvd+rw-tools/dvd+rw-tools-7.1-layerbreaksetup.patch
+++ /dev/null
@@ -1,93 +0,0 @@
-diff -ur dvd+rw-tools-7.1-orig/growisofs.c dvd+rw-tools-7.1/growisofs.c
---- dvd+rw-tools-7.1-orig/growisofs.c	2008-03-04 10:15:03.000000000 +0100
-+++ dvd+rw-tools-7.1/growisofs.c	2009-09-06 22:39:33.000000000 +0200
-@@ -535,7 +535,7 @@
-  */
- int        get_mmc_profile	(void *fd);
- int        plusminus_r_C_parm	(void *fd,char *C_parm);
--pwrite64_t poor_mans_setup	(void *fd,off64_t leadout);
-+pwrite64_t poor_mans_setup	(void *fd,off64_t leadout,unsigned int lbreak);
- char      *plusminus_locale	();
- int        __1x			();
- /*
-@@ -2447,7 +2447,7 @@
- 			    goto out;
- 			}
- 			if (!progress.final) progress.final = tracksize;
--			tracksize = layer_break*CD_BLOCK*2;
-+			//tracksize = layer_break*CD_BLOCK*2;
- 		    }
- 		}
- 		else if (capacity > outoff)
-@@ -2648,7 +2648,7 @@
- 	 * further details on poor_mans_setup
- 	 */
- 	pwrite64_method = poor_mans_setup (ioctl_handle,
--					   outoff+tracksize);
-+					   outoff+tracksize, (unsigned int)layer_break);
-     }
- 
-     if (!progress.final)
-diff -ur dvd+rw-tools-7.1-orig/growisofs_mmc.cpp dvd+rw-tools-7.1/growisofs_mmc.cpp
---- dvd+rw-tools-7.1-orig/growisofs_mmc.cpp	2008-03-04 18:47:49.000000000 +0100
-+++ dvd+rw-tools-7.1/growisofs_mmc.cpp	2009-09-06 20:52:46.000000000 +0200
-@@ -1612,7 +1612,7 @@
-   return 0;
- }
- 
--static void plus_r_dl_split (Scsi_Command &cmd,off64_t size)
-+static void plus_r_dl_split (Scsi_Command &cmd,off64_t size,unsigned int lbreak)
- { int           err;
-   unsigned int  blocks,split;
-   unsigned char dvd_20[4+8];
-@@ -1644,10 +1644,17 @@
- 			"    use single layer media for this recording\n"),
- 	exit (FATAL_START(EMEDIUMTYPE));
- 
--    blocks /= 16;
--    blocks += 1;
--    blocks /= 2;
--    blocks *= 16;
-+    if (lbreak)
-+      {
-+	blocks=lbreak;
-+      }
-+    else
-+      {
-+	blocks /= 16;
-+	blocks += 1;
-+	blocks /= 2;
-+	blocks *= 16;
-+      }
- 
-     fprintf (stderr,"%s: splitting layers at %u blocks\n",
- 		    ioctl_device,blocks);
-@@ -2010,7 +2017,7 @@
- typedef ssize_t (*pwrite64_t)(int,const void *,size_t,off64_t);
- 
- extern "C"
--pwrite64_t poor_mans_setup (void *fd,off64_t leadout)
-+pwrite64_t poor_mans_setup (void *fd,off64_t leadout,unsigned int lbreak)
- { Scsi_Command cmd(ioctl_handle=fd);
-   int err,profile=mmc_profile&0xFFFF;
- 
-@@ -2059,7 +2066,7 @@
- 	case 0x2B:	// DVD+R Double Layer
- 	    plusminus_pages_setup(cmd,profile);
- 	    if (profile==0x2B && next_track==1 && dvd_compat && leadout)
--		plus_r_dl_split (cmd,leadout);
-+	      plus_r_dl_split (cmd,leadout,lbreak);
- 	    atexit (plus_r_finalize);
- 	    if (next_wr_addr)
- 	    {	atsignals (no_r_finalize);
-diff -ur dvd+rw-tools-7.1-orig/transport.hxx dvd+rw-tools-7.1/transport.hxx
---- dvd+rw-tools-7.1-orig/transport.hxx	2008-03-01 11:34:43.000000000 +0100
-+++ dvd+rw-tools-7.1/transport.hxx	2009-09-06 20:53:53.000000000 +0200
-@@ -9,6 +9,7 @@
- #if defined(__unix) || defined(__unix__)
- #include <stdio.h>
- #include <stdlib.h>
-+#include <limits.h>
- #include <unistd.h>
- #include <string.h>
- #include <sys/types.h>
diff --git a/pkgs/tools/graphics/gmic/default.nix b/pkgs/tools/graphics/gmic/default.nix
index c6781310bdb..de439d1a6ba 100644
--- a/pkgs/tools/graphics/gmic/default.nix
+++ b/pkgs/tools/graphics/gmic/default.nix
@@ -15,13 +15,13 @@
 
 stdenv.mkDerivation rec {
   pname = "gmic";
-  version = "2.7.1";
+  version = "2.7.4";
 
   outputs = [ "out" "lib" "dev" "man" ];
 
   src = fetchurl {
     url = "https://gmic.eu/files/source/gmic_${version}.tar.gz";
-    sha256 = "1sxgmrxv1px07h5m7dcdg24c6x39ifjbc1fmz8p2ah91pm57h7n7";
+    sha256 = "0h1c1c6l25c5rjc0wkspmw44k7cafrn0jwc0713vp87qipx416yd";
   };
 
   nativeBuildInputs = [
diff --git a/pkgs/tools/misc/latex2html/default.nix b/pkgs/tools/misc/latex2html/default.nix
index 2ca99eb61e8..59f52c5cf6f 100644
--- a/pkgs/tools/misc/latex2html/default.nix
+++ b/pkgs/tools/misc/latex2html/default.nix
@@ -1,17 +1,16 @@
-{ stdenv, fetchurl, makeWrapper
+{ stdenv, fetchFromGitHub, makeWrapper
 , ghostscript, netpbm, perl }:
 # TODO: withTex
 
-# Ported from Homebrew.
-# https://github.com/Homebrew/homebrew-core/blob/21834573f690407d34b0bbf4250b82ec38dda4d6/Formula/latex2html.rb
-
 stdenv.mkDerivation rec {
   pname = "latex2html";
-  version = "2018";
+  version = "2019.2";
 
-  src = fetchurl {
-    url = "http://mirrors.ctan.org/support/latex2html/latex2html-${version}.tar.gz";
-    sha256 = "1qnlg8ajh0amy9gy8rh8sp1l224ak54264i3dhk7rrv9s4k7bqq9";
+  src = fetchFromGitHub {
+    owner = pname;
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "1bcdhbaxf334wlxzkw5samj2y2q173709y0km3x8xs4bbh70ds6c";
   };
 
   buildInputs = [ ghostscript netpbm perl ];
diff --git a/pkgs/tools/misc/phoronix-test-suite/default.nix b/pkgs/tools/misc/phoronix-test-suite/default.nix
index 2dfbd227ac0..88f24676b79 100644
--- a/pkgs/tools/misc/phoronix-test-suite/default.nix
+++ b/pkgs/tools/misc/phoronix-test-suite/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "phoronix-test-suite";
-  version = "9.0.0";
+  version = "9.0.1";
 
   src = fetchurl {
     url = "https://phoronix-test-suite.com/releases/${pname}-${version}.tar.gz";
-    sha256 = "1gfmkwfzgpbmhv2wdr5aiknv1jyazx7sb33nna34pnd3bkmak0bq";
+    sha256 = "056f2z1ssr2z7qnacq5aihpnawl05blbbw0bv64pkrkl0wss85x1";
   };
 
   buildInputs = [ php ];
diff --git a/pkgs/tools/networking/ipv6calc/default.nix b/pkgs/tools/networking/ipv6calc/default.nix
index 6e04859410f..5de4b8cecb7 100644
--- a/pkgs/tools/networking/ipv6calc/default.nix
+++ b/pkgs/tools/networking/ipv6calc/default.nix
@@ -1,34 +1,37 @@
 { stdenv, fetchurl, getopt, ip2location-c, openssl, perl
-, geoip ? null, geolite-legacy ? null }:
+, libmaxminddb ? null, geolite-legacy ? null }:
 
 stdenv.mkDerivation rec {
   pname = "ipv6calc";
-  version = "2.1.1";
+  version = "2.2.0";
 
   src = fetchurl {
-    url = "ftp://ftp.deepspace6.net/pub/ds6/sources/ipv6calc/${pname}-${version}.tar.gz";
-    sha256 = "01a4p2g31y6p1r3kacymbv2hhvkwnv00yskhphgcgjq5jpkmfjcn";
+    urls = [
+      "https://www.deepspace6.net/ftp/pub/ds6/sources/ipv6calc/${pname}-${version}.tar.gz"
+      "ftp://ftp.deepspace6.net/pub/ds6/sources/ipv6calc/${pname}-${version}.tar.gz"
+      "ftp://ftp.bieringer.de/pub/linux/IPv6/ipv6calc/${pname}-${version}.tar.gz"
+    ];
+    sha256 = "18acy0sy3n6jcjjwpxskysinw06czyayx1q4rqc7zc3ic4pkad8r";
   };
 
-  buildInputs = [ geoip geolite-legacy getopt ip2location-c openssl ];
-  nativeBuildInputs = [ perl ];
+  buildInputs = [ libmaxminddb geolite-legacy getopt ip2location-c openssl perl ];
 
-  patchPhase = ''
+  postPatch = ''
+    patchShebangs *.sh */*.sh
     for i in {,databases/}lib/Makefile.in; do
-      substituteInPlace $i --replace /sbin/ldconfig true
-    done
-    for i in {{,databases/}lib,man}/Makefile.in; do
-      substituteInPlace $i --replace DESTDIR out
+      substituteInPlace $i --replace "/sbin/ldconfig" "ldconfig"
     done
   '';
 
   configureFlags = [
+    "--prefix=${placeholder "out"}"
+    "--libdir=${placeholder "out"}/lib"
     "--disable-bundled-getopt"
     "--disable-bundled-md5"
     "--disable-dynamic-load"
     "--enable-shared"
-  ] ++ stdenv.lib.optional (geoip != null ) [
-    "--enable-geoip"
+  ] ++ stdenv.lib.optional (libmaxminddb != null ) [
+    "--enable-mmdb"
   ] ++ stdenv.lib.optional (geolite-legacy != null) [
     "--with-geoip-db=${geolite-legacy}/share/GeoIP"
   ] ++ stdenv.lib.optional (ip2location-c != null ) [
@@ -47,7 +50,7 @@ stdenv.mkDerivation rec {
       difficult) migrating the Perl program ip6_int into.
       Now only one utiltity is needed to do a lot.
     '';
-    homepage = http://www.deepspace6.net/projects/ipv6calc.html;
+    homepage = "http://www.deepspace6.net/projects/ipv6calc.html";
     license = licenses.gpl2;
     platforms = platforms.linux;
   };
diff --git a/pkgs/tools/networking/openapi-generator-cli/default.nix b/pkgs/tools/networking/openapi-generator-cli/default.nix
index 5fd1172778e..df4ac83191d 100644
--- a/pkgs/tools/networking/openapi-generator-cli/default.nix
+++ b/pkgs/tools/networking/openapi-generator-cli/default.nix
@@ -1,7 +1,7 @@
 { stdenv, fetchurl, jre, makeWrapper }:
 
 stdenv.mkDerivation rec {
-  version = "4.1.2";
+  version = "4.1.3";
   pname = "openapi-generator-cli";
 
   jarfilename = "${pname}-${version}.jar";
@@ -12,7 +12,7 @@ stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "http://central.maven.org/maven2/org/openapitools/${pname}/${version}/${jarfilename}";
-    sha256 = "18f5ksngx6afh7rrw9aiw7q6yx801qflbbbqc7i28b68l9dh5qy4";
+    sha256 = "0bqdjparv12wscq4qhm9xnryyfmdnn3w77hrhnsy8mlvxk2vnk13";
   };
 
   phases = [ "installPhase" ];
diff --git a/pkgs/tools/networking/wireguard-tools/default.nix b/pkgs/tools/networking/wireguard-tools/default.nix
index bd17fa054d3..ad449429f99 100644
--- a/pkgs/tools/networking/wireguard-tools/default.nix
+++ b/pkgs/tools/networking/wireguard-tools/default.nix
@@ -13,11 +13,11 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   pname = "wireguard-tools";
-  version = "0.0.20190913";
+  version = "0.0.20191012";
 
   src = fetchzip {
     url = "https://git.zx2c4.com/WireGuard/snapshot/WireGuard-${version}.tar.xz";
-    sha256 = "08ns5d6xbl0qylb98mml0yh0yp837a1sm3hvpra21by1dvx8k0dg";
+    sha256 = "0nwcx7m5cpp4h1bclswiqq1jzj08xzpxmq5s4rcfqmrp59cmwgrs";
   };
 
   sourceRoot = "source/src/tools";
@@ -53,7 +53,7 @@ stdenv.mkDerivation rec {
     downloadPage = "https://git.zx2c4.com/WireGuard/refs/";
     homepage = "https://www.wireguard.com/";
     license = licenses.gpl2;
-    maintainers = with maintainers; [ elseym ericsagnes mic92 zx2c4 globin ];
+    maintainers = with maintainers; [ elseym ericsagnes mic92 zx2c4 globin ma27 ];
     platforms = platforms.unix;
   };
 }
diff --git a/pkgs/tools/package-management/nix/default.nix b/pkgs/tools/package-management/nix/default.nix
index 269d7261536..5c55ac31588 100644
--- a/pkgs/tools/package-management/nix/default.nix
+++ b/pkgs/tools/package-management/nix/default.nix
@@ -10,7 +10,7 @@ let
 
 common =
   { lib, stdenv, fetchpatch, perl, curl, bzip2, sqlite, openssl ? null, xz
-  , pkgconfig, boehmgc, perlPackages, libsodium, brotli, boost, editline
+  , pkgconfig, boehmgc, perlPackages, libsodium, brotli, boost, editline, nlohmann_json
   , autoreconfHook, autoconf-archive, bison, flex, libxml2, libxslt, docbook5, docbook_xsl_ns, jq
   , busybox-sandbox-shell
   , storeDir
@@ -39,7 +39,7 @@ common =
         ++ lib.optionals (!is20) [ curl perl ]
         ++ lib.optionals fromGit [ autoreconfHook autoconf-archive bison flex libxml2 libxslt docbook5 docbook_xsl_ns jq ];
 
-      buildInputs = [ curl openssl sqlite xz bzip2 ]
+      buildInputs = [ curl openssl sqlite xz bzip2 nlohmann_json ]
         ++ lib.optional (stdenv.isLinux || stdenv.isDarwin) libsodium
         ++ lib.optionals is20 [ brotli boost editline ]
         ++ lib.optional withLibseccomp libseccomp
@@ -201,12 +201,12 @@ in rec {
 
   nixFlakes = lib.lowPrio (callPackage common rec {
     name = "nix-2.4${suffix}";
-    suffix = "pre20190922_382aa05";
+    suffix = "pre20191022_9cac895";
     src = fetchFromGitHub {
       owner = "NixOS";
       repo = "nix";
-      rev = "382aa05ff71b61379f5c2792eaf517bdf4a5c5bf";
-      hash = "sha256-k4vV3Q1YVmLd+49AETnsSGetpDjD6sdd9yBrnpi8Q3g=";
+      rev = "9cac895406724e0304dff140379783c4d786e855";
+      hash = "sha256-Y1cdnCNoJmjqyC/a+Nt2N+5L3Ttg7K7zOD7gmtg1QzA=";
     };
     fromGit = true;
 
diff --git a/pkgs/tools/security/monkeysphere/default.nix b/pkgs/tools/security/monkeysphere/default.nix
index b4d5ddb267d..97d032045b3 100644
--- a/pkgs/tools/security/monkeysphere/default.nix
+++ b/pkgs/tools/security/monkeysphere/default.nix
@@ -97,7 +97,7 @@ in stdenv.mkDerivation rec {
       familiar with, such as your web browser0 or secure shell.
     '';
     license = licenses.gpl3Plus;
-    platforms = platforms.all;
+    platforms = platforms.linux;
     maintainers = with maintainers; [ primeos ];
   };
 }
diff --git a/pkgs/tools/system/acpica-tools/default.nix b/pkgs/tools/system/acpica-tools/default.nix
index 94da72c54b3..269b6a82bbc 100644
--- a/pkgs/tools/system/acpica-tools/default.nix
+++ b/pkgs/tools/system/acpica-tools/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "acpica-tools";
-  version = "20190816";
+  version = "20191018";
 
   src = fetchurl {
     url = "https://acpica.org/sites/acpica/files/acpica-unix-${version}.tar.gz";
-    sha256 = "0p7ws106hf8bir9yb1a5m6v3wmvqagxmk3l9rpp4i89vib44vv3s";
+    sha256 = "0pz95fb1zvsj9238bg7a4vxl1svn5mnjg10sn5qvgr008q0v9782";
   };
 
   NIX_CFLAGS_COMPILE = "-O3";
diff --git a/pkgs/tools/text/xml/html-xml-utils/default.nix b/pkgs/tools/text/xml/html-xml-utils/default.nix
index ed19e114469..7ac624caff1 100644
--- a/pkgs/tools/text/xml/html-xml-utils/default.nix
+++ b/pkgs/tools/text/xml/html-xml-utils/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "html-xml-utils";
-  version = "7.7";
+  version = "7.8";
 
   src = fetchurl {
     url = "https://www.w3.org/Tools/HTML-XML-utils/${pname}-${version}.tar.gz";
-    sha256 = "1vwqp5q276j8di9zql3kygf31z2frp2c59yjqlrvvwcvccvkcdwr";
+    sha256 = "0p8df3c6mw879vdi8l63kbdqylkf1is10b067mh9kipgfy91rd4s";
   };
 
   buildInputs = [curl libiconv];
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index ede5965f8c9..a2100e58473 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -215,6 +215,8 @@ in
 
   dotnet-sdk = callPackage ../development/compilers/dotnet/sdk { };
 
+  dumb-init = callPackage ../applications/virtualization/dumb-init {};
+
   dispad = callPackage ../tools/X11/dispad { };
 
   dump1090 = callPackage ../applications/radio/dump1090 { };
@@ -2201,6 +2203,10 @@ in
 
   cdrkit = callPackage ../tools/cd-dvd/cdrkit { };
 
+  cdrtools = callPackage ../tools/cd-dvd/cdrtools {
+    inherit (darwin.apple_sdk.frameworks) Carbon IOKit;
+  };
+
   mdf2iso = callPackage ../tools/cd-dvd/mdf2iso { };
 
   nrg2iso = callPackage ../tools/cd-dvd/nrg2iso { };
@@ -17820,10 +17826,6 @@ in
     inherit (darwin.apple_sdk.frameworks) Carbon;
   };
 
-  cdrtools = callPackage ../applications/misc/cdrtools {
-    inherit (darwin.apple_sdk.frameworks) Carbon IOKit;
-  };
-
   centerim = callPackage ../applications/networking/instant-messengers/centerim { };
 
   cgit = callPackage ../applications/version-management/git-and-tools/cgit {
@@ -21418,6 +21420,8 @@ in
 
   vym = qt5.callPackage ../applications/misc/vym { };
 
+  waon = callPackage ../applications/audio/waon { };
+
   w3m = callPackage ../applications/networking/browsers/w3m { };
 
   # Should always be the version with the most features
diff --git a/pkgs/top-level/php-packages.nix b/pkgs/top-level/php-packages.nix
index 74c4d202f37..e106c6a05f6 100644
--- a/pkgs/top-level/php-packages.nix
+++ b/pkgs/top-level/php-packages.nix
@@ -338,12 +338,12 @@ let
   };
 
   phpcbf = mkDerivation rec {
-    version = "3.5.0";
+    version = "3.5.1";
     pname = "phpcbf";
 
     src = pkgs.fetchurl {
       url = "https://github.com/squizlabs/PHP_CodeSniffer/releases/download/${version}/phpcbf.phar";
-      sha256 = "15n3r3sc62ar1kq38idw22y7gasvy747bix99zs0l0paapcbxz6n";
+      sha256 = "1b68cmdvg356s2vk5q0jkk8sizza7r7pbcl9v5s0944wi0apsj0r";
     };
 
     phases = [ "installPhase" ];
@@ -365,12 +365,12 @@ let
   };
 
   phpcs = mkDerivation rec {
-    version = "3.5.0";
+    version = "3.5.1";
     pname = "phpcs";
 
     src = pkgs.fetchurl {
       url = "https://github.com/squizlabs/PHP_CodeSniffer/releases/download/${version}/phpcs.phar";
-      sha256 = "078anf2r6a3p8v575m65vryazipgfchs07yb92m9xh41lk5wlndf";
+      sha256 = "060jzgd99j16xjs0n75sgp79an6n7qp6zv5lrw6700jnw67zpmn7";
     };
 
     phases = [ "installPhase" ];
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 93a2aea0973..4fa03173ce1 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -6233,6 +6233,8 @@ in {
 
   python-docx = callPackage ../development/python-modules/python-docx { };
 
+  python-doi = callPackage ../development/python-modules/python-doi { };
+
   aiohue = callPackage ../development/python-modules/aiohue { };
 
   PyMVGLive = callPackage ../development/python-modules/pymvglive { };