Merge master into staging-next

pkgs/development/python-modules/JPype1/default.nix

@@ -1,4 +1,8 @@
-{ buildPythonPackage, fetchPypi, pytest }:
+{ lib
+, buildPythonPackage
+, fetchPypi
+, pytest
+}:
 
 buildPythonPackage rec {
   pname = "JPype1";
@@ -9,16 +13,17 @@ buildPythonPackage rec {
     sha256 = "c16d01cde9c2c955d76d45675e64b06c3255784d49cea4147024e99a01fbbb18";
   };
 
-  patches = [ ./set-compiler-language.patch ];
+  checkInputs = [
+    pytest
+  ];
 
-  checkInputs = [ pytest ];
-
-  # ImportError: Failed to import test module: test.testlucene
+  # required openjdk (easy) but then there were some class path issues
+  # when running the tests
   doCheck = false;
 
-  meta = {
-    homepage = "https://github.com/originell/jpype/";
-    license = "License :: OSI Approved :: Apache Software License";
-    description = "A Python to Java bridge.";
+  meta = with lib; {
+    homepage = https://github.com/originell/jpype/;
+    license = licenses.asl20;
+    description = "A Python to Java bridge";
   };
 }

pkgs/development/python-modules/JPype1/set-compiler-language.patch

@@ -1,12 +0,0 @@
-diff -Naur a/setup.py b/setup.py
---- a/setup.py	2017-01-12 19:08:44.000000000 -0500
-+++ b/setup.py	2018-02-15 12:28:16.000000000 -0500
-@@ -123,7 +123,7 @@
- 
-     # extra compile args
-     copt = {'msvc': ['/EHsc'],
--            'unix' : ['-ggdb'],
-+            'unix' : ['-ggdb', '-x', 'c++'],
-             'mingw32' : [],
-            }
-     # extra link args

pkgs/development/python-modules/JayDeBeApi/default.nix

@@ -1,16 +1,25 @@
-{ lib, buildPythonPackage, fetchPypi, JPype1 }:
+{ lib
+, buildPythonPackage
+, fetchPypi
+, JPype1
+}:
 
 buildPythonPackage rec {
   pname = "JayDeBeApi";
   version = "1.1.1";
+
   src = fetchPypi {
     inherit pname version;
     sha256 = "0a189xs9zw81jvwwglvf2qyqnk6ra0biljssx9n4ffayqn9glbds";
   };
-  propagatedBuildInputs = [ JPype1 ];
-  meta = {
-    homepage = "https://github.com/baztian/jaydebeapi";
-    license = lib.licenses.lgpl2;
-    description = "Use JDBC database drivers from Python 2/3 or Jython with a DB-API.";
+
+  propagatedBuildInputs = [
+    JPype1
+  ];
+
+  meta = with lib; {
+    homepage = https://github.com/baztian/jaydebeapi;
+    license = licenses.lgpl2;
+    description = "Use JDBC database drivers from Python 2/3 or Jython with a DB-API";
   };
 }

pkgs/development/python-modules/annoy/default.nix

@@ -1,6 +1,7 @@
 { stdenv
 , buildPythonPackage
 , fetchPypi
+, h5py
 , nose
 }:
 
@@ -13,6 +14,8 @@ buildPythonPackage rec {
     sha256 = "fe2779664bd8846f2d67191a7e6010b8df890ac4586336748fd0697f31654379";
   };
 
+  nativeBuildInputs = [ h5py ];
+
   checkInputs = [
     nose
   ];

pkgs/development/python-modules/area/default.nix

@@ -0,0 +1,20 @@
+{ lib, buildPythonPackage, fetchPypi }:
+
+buildPythonPackage rec {
+  pname = "area";
+  version = "1.1.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "18k5hwmlxhajlq306zxndsglb11vv8vd4vpmwx8dpvfxd1kbksya";
+  };
+
+  # tests not working on the package from pypi
+  doCheck = false;
+
+  meta = with lib; {
+    description = "Calculate the area inside of any GeoJSON geometry. This is a port of Mapbox’s geojson-area for Python.";
+    homepage = "https://github.com/scisco/area";
+    license = licenses.bsd2;
+  };
+}

pkgs/development/python-modules/asn1crypto/default.nix

@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "asn1crypto";
-  version = "1.2.0";
+  version = "1.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "87620880a477123e01177a1f73d0f327210b43a3cdbd714efcd2fa49a8d7b384";
+    sha256 = "0bf4xxaig0b9dv6njynaqk2j7vlpagh3y49s9qj95y0jvjw5q8as";
   };
 
   # No tests included

pkgs/development/python-modules/bugwarrior/default.nix

@@ -1,31 +1,31 @@
-{ stdenv, buildPythonPackage, fetchPypi
-, mock, unittest2, nose
+{ stdenv, buildPythonPackage, fetchPypi, pythonOlder, setuptools
 , twiggy, requests, offtrac, bugzilla, taskw, dateutil, pytz, keyring, six
-, jinja2, pycurl, dogpile_cache, lockfile, click, pyxdg, future }:
+, jinja2, pycurl, dogpile_cache, lockfile, click, pyxdg, future, jira }:
 
 buildPythonPackage rec {
   pname = "bugwarrior";
   version = "1.7.0";
+  disabled = pythonOlder "3.6";
 
   src = fetchPypi {
     inherit pname version;
     sha256 = "1pmznka5dxcdjfak0p1yh7lhfbfazmx8g9ysv57lsrkqy4n61qks";
   };
 
-  buildInputs = [ mock unittest2 nose /* jira megaplan */ ];
   propagatedBuildInputs = [
+    setuptools
     twiggy requests offtrac bugzilla taskw dateutil pytz keyring six
-    jinja2 pycurl dogpile_cache lockfile click pyxdg future
+    jinja2 pycurl dogpile_cache lockfile click pyxdg future jira
   ];
 
-  # for the moment jira>=0.22 and megaplan>=1.4 are missing for running the test suite.
+  # for the moment oauth2client <4.0.0 and megaplan>=1.4 are missing for running the test suite.
   doCheck = false;
 
   meta = with stdenv.lib; {
-    homepage =  https://github.com/ralphbean/bugwarrior;
+    homepage = https://github.com/ralphbean/bugwarrior;
     description = "Sync github, bitbucket, bugzilla, and trac issues with taskwarrior";
     license = licenses.gpl3Plus;
     platforms = platforms.all;
-    maintainers = with maintainers; [ pierron ];
+    maintainers = with maintainers; [ pierron yurrriq ];
   };
 }

pkgs/development/python-modules/connexion/default.nix

@@ -32,14 +32,14 @@
 
 buildPythonPackage rec {
   pname = "connexion";
-  version = "2.3.0";
+  version = "2.4.0";
 
   # we're fetching from GitHub because tests weren't distributed on PyPi
   src = fetchFromGitHub {
     owner = "zalando";
     repo = pname;
     rev = version;
-    sha256 = "1xdm3misxwgrl87ms0vvn0h4rjwzlmmi7kcra2ahs40iaraf33ln";
+    sha256 = "1b9q027wrks0afl7l3a1wxymz3aick26b9fq2m07pc5wb9np0vvg";
   };
 
   checkInputs = [

pkgs/development/python-modules/h3/default.nix

@@ -0,0 +1,35 @@
+{ stdenv
+, buildPythonPackage
+, cmake
+, fetchPypi
+, h3
+, python
+}:
+
+buildPythonPackage rec {
+  pname = "h3";
+  version = "3.4.3";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "07dlqpr1r4kzb3gci395plpss8gxvvrij40l6w0mylyg7fkab4m2";
+  };
+
+  patches = [
+    ./disable-custom-install.patch
+    ./hardcode-h3-path.patch
+  ];
+
+  preBuild = ''
+    substituteInPlace h3/h3.py \
+      --subst-var-by libh3_path ${h3}/lib/libh3${stdenv.hostPlatform.extensions.sharedLibrary}
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = "https://github.com/uber/h3-py";
+    description = "This library provides Python bindings for the H3 Core Library.";
+    license = licenses.asl20;
+    platforms = platforms.unix ++ platforms.darwin;
+    maintainers = [ maintainers.kalbasit ];
+  };
+}

pkgs/development/python-modules/h3/disable-custom-install.patch

@@ -0,0 +1,41 @@
+diff --git a/setup.py b/setup.py
+index 8e1c220..45297b6 100644
+--- a/setup.py
++++ b/setup.py
+@@ -25,20 +25,6 @@ class CustomBuildExtCommand(build_ext):
+         install_h3(h3_version)
+
+
+-# Tested with wheel v0.29.0
+-class BinaryDistribution(Distribution):
+-    def __init__(self, attrs=None):
+-        Distribution.__init__(self, attrs)
+-        # The values used for the name and sources in the Extension below are
+-        # not important, because we override the build_ext command above.
+-        # The normal C extension building logic is never invoked, and is
+-        # replaced with our own custom logic. However, ext_modules cannot be
+-        # empty, because this signals to other parts of distutils that our
+-        # package contains C extensions and thus needs to be built for
+-        # different platforms separately.
+-        self.ext_modules = [Extension('h3c', [])]
+-
+-
+ long_description = open('README.rst').read()
+
+ setup(
+@@ -52,14 +38,10 @@ setup(
+     url='https://github.com/uber/h3-py.git',
+     packages=find_packages(exclude=['tests', 'tests.*']),
+     install_requires=[],
+-    cmdclass={
+-        'build_ext': CustomBuildExtCommand,
+-    },
+     package_data={
+         'h-py':
+         ['out/*.dylib' if platform.system() == 'Darwin' else (
+             'out/*.dll' if platform.system() == 'Windows' else
+             'out/*.so.*')]
+     },
+-    license='Apache License 2.0',
+-    distclass=BinaryDistribution)
++    license='Apache License 2.0')

pkgs/development/python-modules/h3/hardcode-h3-path.patch

@@ -0,0 +1,19 @@
+diff --git a/h3/h3.py b/h3/h3.py
+index 18cf168..2cc7812 100644
+--- a/h3/h3.py
++++ b/h3/h3.py
+@@ -34,13 +34,7 @@ from ctypes import (
+     POINTER,
+ )
+
+-_dirname = os.path.dirname(__file__)
+-libh3_path = ('{}/{}'.format(_dirname, 'out/libh3.1.dylib')
+-              if platform.system() == 'Darwin' else (
+-              '{}/{}'.format(_dirname, 'out/h3.dll') if platform.system() == 'Windows' else
+-              '{}/{}'.format(_dirname, 'out/libh3.so.1')))
+-
+-libh3 = cdll.LoadLibrary(libh3_path)
++libh3 = cdll.LoadLibrary('@libh3_path@')
+
+ # Type of an H3 index
+ H3Index = c_ulonglong

pkgs/development/python-modules/imgaug/default.nix

@@ -1,30 +1,55 @@
-{ stdenv, buildPythonPackage, fetchPypi, numpy, scipy, scikitimage, opencv3, six }:
+{ buildPythonPackage
+, fetchurl
+, imageio
+, numpy
+, opencv3
+, pytest
+, scikitimage
+, scipy
+, shapely
+, six
+, stdenv
+}:
 
 buildPythonPackage rec {
   pname = "imgaug";
   version = "0.3.0";
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "e1354d41921f1b306b50c5141b4870f17e81b531cae2f5c3093da9dc4dcb3cf4";
+  src = fetchurl {
+    url = "https://github.com/aleju/imgaug/archive/c3d99a420efc45652a1264920dc20378a54b1325.zip";
+    sha256 = "sha256:174nvhyhdn3vz0i34rqmkn26840j3mnfr55cvv5bdf9l4y9bbjq2";
   };
 
+  postPatch = ''
+    substituteInPlace requirements.txt \
+      --replace "opencv-python-headless" ""
+    substituteInPlace setup.py \
+      --replace "opencv-python-headless" "" 
+    substituteInPlace pytest.ini \
+      --replace "--xdoctest --xdoctest-global-exec=\"import imgaug as ia\nfrom imgaug import augmenters as iaa\"" ""
+  '';
+
   propagatedBuildInputs = [
+    imageio
     numpy
-    scipy
-    scikitimage
     opencv3
+    scikitimage
+    scipy
+    shapely
     six
   ];
 
-  # disable tests when there are no tests in the PyPI archive
-  doCheck = false;
+  checkPhase = ''
+     pytest ./test
+  '';
+
+  checkInputs = [ opencv3 pytest ];
 
   meta = with stdenv.lib; {
     homepage = https://github.com/aleju/imgaug;
     description = "Image augmentation for machine learning experiments";
     license = licenses.mit;
-    maintainers = with maintainers; [ cmcdragonkai ];
-    broken = true; # opencv-python bindings aren't available yet, and look non-trivial
+    maintainers = with maintainers; [ cmcdragonkai rakesh4g ];
+    platforms = platforms.linux;
   };
 }

pkgs/development/python-modules/irc/default.nix

@@ -5,13 +5,13 @@
 
 buildPythonPackage rec {
   pname = "irc";
-  version = "17.1";
+  version = "18.0.0";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0c19aeee800dbad792179d70dff1281c06fec220323f8ec34150cd94357f383b";
+    sha256 = "1qg5996mzvhnkm74ksaa4d47fz5vrpw6hvxyaq9kf6y4cf1l76wq";
   };
 
   doCheck = false;

pkgs/development/python-modules/jieba/default.nix

@@ -2,14 +2,14 @@
 
 buildPythonPackage rec {
   pname = "jieba";
-  version = "0.39";
+  version = "0.40";
 
   # no tests in PyPI tarball
   src = fetchFromGitHub {
     owner = "fxsjy";
     repo = pname;
     rev = "v${version}";
-    sha256 = "0hbq0l1jbgcvm58qg4p37im4jl5a9igvq3wlhlk22pmbkbvqqgzs";
+    sha256 = "1nasyxva9m3k9fb9g627ppphp3697jdplbb2bavqx71sa7mqim2m";
   };
 
   checkInputs = [ glibcLocales ];

pkgs/development/python-modules/kconfiglib/default.nix

@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "kconfiglib";
-  version = "13.6.0";
+  version = "13.7.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "5bd148042654788a30ead478208abd44d5df971013a226b0aabae3c4243561bd";
+    sha256 = "0dkfprrsds64d2jbqnwdzb4why84jaj968s3ccmyqg5385nr9fwd";
   };
 
   # doesnt work out of the box but might be possible

pkgs/development/python-modules/mypy/default.nix

@@ -5,12 +5,12 @@
 
 buildPythonPackage rec {
   pname = "mypy";
-  version = "0.750";
+  version = "0.761";
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0k0l74g3jcq7ppzn234sffsaacn6qaq242famckk0cviwgld1jvf";
+    sha256 = "1gw7h84d21wmi267kmgqs9whz0l7rp62pzja2f31wq7cfj6spfl5";
   };
 
   propagatedBuildInputs = [ typed-ast psutil mypy-extensions typing-extensions ];

pkgs/development/python-modules/nuitka/default.nix

@@ -12,13 +12,13 @@ let
   # Therefore we create a separate env for it.
   scons = pkgs.python27.withPackages(ps: [ pkgs.scons ]);
 in buildPythonPackage rec {
-  version = "0.6.5";
+  version = "0.6.6";
   pname = "Nuitka";
 
   # Latest version is not yet on PyPi
   src = fetchurl {
     url = "https://github.com/kayhayen/Nuitka/archive/${version}.tar.gz";
-    sha256 = "18vcmbyqdwsfa9gyj1sf518hsqczx7qlzrdc22hdb1zawzknb1pb";
+    sha256 = "1ia37072qdbgdvh9qxkrhi3mlqn3kcn0qm5xjz6f68sis6ni9kw2";
   };
 
   checkInputs = [ vmprof pyqt4 ];

pkgs/development/python-modules/numexpr/default.nix

@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "numexpr";
-  version = "2.7.0";
+  version = "2.7.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "37324b5981b8962102bdc8640c4f05f5589da5d1df2702418783085cb78ca217";
+    sha256 = "1c82z0zx0542j9df6ckjz6pn1g13b21hbza4hghcw6vyhbckklmh";
   };
 
   # Remove existing site.cfg, use the one we built for numpy.

pkgs/development/python-modules/opentracing/default.nix

@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "opentracing";
-  version = "2.2.0";
+  version = "2.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "cfd231ba5c58f90bc277787e62861eb0c6e4af76e42957bec240bbdf71fb7e0e";
+    sha256 = "0rcpmhy7hm6ljlm1w455il53s1amq2vii2x1wfkrcx3sj4s0dc9k";
   };
 
   propagatedBuildInputs = lib.optional isPy27 futures;

pkgs/development/python-modules/oscrypto/default.nix

@@ -0,0 +1,41 @@
+{ buildPythonPackage
+, asn1crypto
+, fetchPypi
+, lib
+, openssl
+}:
+
+buildPythonPackage rec {
+  pname = "oscrypto";
+  version = "1.1.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1vlryamwr442w2av8f54ldhls8fqs6678fg60pqbrf5pjy74kg23";
+  };
+
+  testSources = fetchPypi {
+    inherit version;
+    pname = "oscrypto_tests";
+    sha256 = "1crndz647pqdd8148yn3n5l63xwr6qkwa1qarsz59nk3ip0dsyq5";
+  };
+
+  preCheck = ''
+    tar -xf ${testSources}
+    mv oscrypto_tests-${version} tests
+
+    # remove tests that require network
+    sed -e '/TLSTests/d' -e '/TrustListTests/d' -i tests/__init__.py
+  '';
+
+  propagatedBuildInputs = [
+    asn1crypto
+    openssl
+  ];
+
+  meta = with lib; {
+    description = "A compilation-free, always up-to-date encryption library for Python that works on Windows, OS X, Linux and BSD.";
+    homepage = "https://www.snowflake.com/";
+    license = licenses.mit;
+  };
+}

pkgs/development/python-modules/pre-commit/default.nix

@@ -14,12 +14,12 @@
 
 buildPythonApplication rec {
   pname = "pre-commit";
-  version = "1.20.0";
+  version = "1.21.0";
 
   src = fetchPypi {
     inherit version;
     pname = "pre_commit";
-    sha256 = "0vmv3hrivm0sm81cn59n2pmw8h323sg4sgncl910djby2a3jc5cz";
+    sha256 = "0l5qg1cw4a0670m96s0ryy5mqz5aslfrrnwpriqgmrnsgdixhj4g";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/pyGithub/default.nix

@@ -3,13 +3,13 @@
 
 buildPythonPackage rec {
   pname = "PyGithub";
-  version = "1.44.1";
+  version = "1.45";
 
   src = fetchFromGitHub {
     owner = "PyGithub";
     repo = "PyGithub";
     rev = "v${version}";
-    sha256 = "16ngnnm7xj9bd97pvyddag17dx28c5wi0gjx4ws8c8nrmf5w3iqk";
+    sha256 = "1aiyqwdxpcr7yzz7aqmmjn1g2ajs5bpbln4sax5zw19dqi6qgp9z";
   };
 
   propagatedBuildInputs = [ python-jose pyjwt requests deprecated httpretty ];

pkgs/development/python-modules/pyspf/default.nix

@@ -1,16 +1,21 @@
-{ lib, buildPythonPackage, fetchPypi, pydns }:
+{ lib, python, buildPythonPackage, fetchFromGitHub, pydns }:
 
 buildPythonPackage rec {
   pname = "pyspf";
-  version = "2.0.13"; # version 2.0.13 should not be used, see #72791
+  version = "2.0.14";
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "62dc1be39519e343202d480da7ef93d834b5a50cd4f217bef9335ed15292929b";
+  src = fetchFromGitHub {
+    owner = "sdgathman";
+    repo = pname;
+    rev = "pyspf-${version}";
+    sha256 = "0bmimlmwrq9glnjc4i6pwch30n3y5wyqmkjfyayxqxkfrixqwydi";
   };
 
   propagatedBuildInputs = [ pydns ];
 
+  # requires /etc/resolv.conf to exist
+  doCheck = false;
+
   meta = with lib; {
     homepage = http://bmsi.com/python/milter.html;
     description = "Python API for Sendmail Milters (SPF)";

pkgs/development/python-modules/python-jenkins/default.nix

@@ -15,11 +15,11 @@
 
 buildPythonPackage rec {
   pname = "python-jenkins";
-  version = "1.5.0";
+  version = "1.6.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0b11f7c1dffc48579afefa8a310cba5b1c98785b9132892ff8cf5312f32ebc90";
+    sha256 = "1aa6rnzlzdgndiwjdbnklgz5pqy5zd7d6g7bhzsvyf0614z1w010";
   };
 
   buildInputs = [ mock ];

pkgs/development/python-modules/snowflake-connector-python/default.nix

@@ -0,0 +1,65 @@
+{ buildPythonPackage
+, asn1crypto
+, azure-storage-blob
+, boto3
+, certifi
+, cffi
+, fetchPypi
+, future
+, idna
+, ijson
+, isPy3k
+, lib
+, oscrypto
+, pyarrow
+, pyasn1-modules
+, pycryptodomex
+, pyjwt
+, pyopenssl
+, pytz
+, requests
+, six
+, urllib3
+}:
+
+buildPythonPackage rec {
+  pname = "snowflake-connector-python";
+  version = "2.1.2";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "06061d59lapqrlg3gzdk4bi3v9c3q5zxfs0if5v2chg1f2l80ncr";
+  };
+
+  propagatedBuildInputs = [
+    azure-storage-blob
+    asn1crypto
+    boto3
+    certifi
+    cffi
+    future
+    idna
+    ijson
+    oscrypto
+    pycryptodomex
+    pyjwt
+    pyopenssl
+    pytz
+    requests
+    six
+  ] ++ lib.optionals (!isPy3k) [
+    pyarrow
+    pyasn1-modules
+    urllib3
+  ];
+
+  # tests are not working
+  # XXX: fix the tests
+  doCheck = false;
+
+  meta = with lib; {
+    description = "Snowflake Connector for Python";
+    homepage = "https://www.snowflake.com/";
+    license = licenses.asl20;
+  };
+}

pkgs/development/python-modules/snowflake-sqlalchemy/default.nix

@@ -0,0 +1,27 @@
+{ buildPythonPackage
+, lib
+, fetchPypi
+, sqlalchemy
+, snowflake-connector-python
+}:
+
+buildPythonPackage rec {
+  pname = "snowflake-sqlalchemy";
+  version = "1.1.17";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1pmmwkw29944zh044azwbc1gf4s04fm55920d9if2a3zpjm6c5d7";
+  };
+
+  propagatedBuildInputs = [
+    sqlalchemy
+    snowflake-connector-python
+  ];
+
+  meta = with lib; {
+    description = "Snowflake SQLAlchemy Dialect";
+    homepage = "https://www.snowflake.net/";
+    license = licenses.asl20;
+  };
+}

pkgs/development/python-modules/telethon/default.nix

@@ -2,12 +2,12 @@
 
 buildPythonPackage rec {
   pname = "telethon";
-  version = "1.10.9";
+  version = "1.10.10";
 
   src = fetchPypi {
     inherit version;
     pname = "Telethon";
-    sha256 = "16qb5hv8kh4plic1155ky9b88xz9iahhv1s3h47678hl7mjy2jc7";
+    sha256 = "0zm3577f1l5g0i0gcxr3s0nrqy0i81ppr6vp31p550vvnlnkjsqj";
   };
 
   propagatedBuildInputs = [

pkgs/development/python-modules/tensorflow/cuda-10.2-no-bin2c-path.patch

@@ -0,0 +1,10 @@
+--- a/third_party/nccl/build_defs.bzl.tpl
++++ b/third_party/nccl/build_defs.bzl.tpl
+@@ -113,7 +113,6 @@ def _device_link_impl(ctx):
+             "--cmdline=--compile-only",
+             "--link",
+             "--compress-all",
+-            "--bin2c-path=%s" % bin2c.dirname,
+             "--create=%s" % tmp_fatbin.path,
+             "--embedded-fatbin=%s" % fatbin_h.path,
+         ] + images,

pkgs/development/python-modules/tensorflow/default.nix

@@ -124,6 +124,10 @@ let
         sha256 = "077cpj0kzyqxzdya1dwh8df17zfzhqn7c685hx6iskvw2979zg2n";
       })
       ./lift-gast-restriction.patch
+
+      # cuda 10.2 does not have "-bin2c-path" option anymore
+      # https://github.com/tensorflow/tensorflow/issues/34429
+      ./cuda-10.2-no-bin2c-path.patch
     ];
 
     # On update, it can be useful to steal the changes from gentoo

pkgs/development/python-modules/tiledb/default.nix

@@ -13,14 +13,14 @@
 
 buildPythonPackage rec {
   pname = "tiledb";
-  version = "0.5.2";
+  version = "0.5.3";
   format = "setuptools";
 
   src = fetchFromGitHub {
     owner = "TileDB-Inc";
     repo = "TileDB-Py";
     rev = version;
-    sha256 = "0y7llvy943fviayjny8xybvn3sm1ikjvazqk172ls90lcpr8rlr1";
+    sha256 = "1wzzq3ggrprnjqgx9168r4x8cj1rh2ikr6mlxgbi463p5hnlkb5m";
   };
 
   nativeBuildInputs = [

pkgs/development/python-modules/timezonefinder/default.nix

@@ -0,0 +1,31 @@
+{ buildPythonPackage
+, lib
+, fetchPypi
+, isPy27
+, numba
+, numpy
+}:
+
+buildPythonPackage rec {
+  pname = "timezonefinder";
+  version = "4.2.0";
+
+  disabled = isPy27;
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0q8nd279labn03dz17s4xrglk1d31q9y8wcx99l51i5cxx53zsap";
+  };
+
+  propagatedBuildInputs = [
+    numpy
+  ];
+
+  checkInputs = [ numba ];
+
+  meta = with lib; {
+    description = "fast python package for finding the timezone of any point on earth (coordinates) offline";
+    homepage = "https://github.com/MrMinimal64/timezonefinder";
+    license = licenses.mit;
+  };
+}

pkgs/development/python-modules/wasabi/default.nix

@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "wasabi";
-  version = "0.4.2";
+  version = "0.6.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9af48b37709000dac34653be376aaac2e3e15392b8c78d0898124c52e083d088";
+    sha256 = "0qv0zpr6kwjwygx9k8jgafiil5wh2zsyryvbxghzv4yn7jb3xpdq";
   };
 
   checkInputs = [

pkgs/development/python-modules/xcffib/default.nix

@@ -7,12 +7,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "0.8.1";
+  version = "0.9.0";
   pname = "xcffib";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "03nf3xrqq25sj9phqc9ngvqxrrp14s4ifsx9hv41kp7zi3xamsfn";
+    sha256 = "1r03yvxwbimh8ngfrbd436f9r535vvj6m1b3zfgz9kl76c8yn5ic";
   };
 
   patchPhase = ''

pkgs/development/python-modules/xmlschema/default.nix

@@ -4,14 +4,14 @@
 }:
 
 buildPythonPackage rec {
-  version = "1.0.17";
+  version = "1.0.18";
   pname = "xmlschema";
 
   src = fetchFromGitHub {
     owner = "sissaschool";
     repo = "xmlschema";
     rev = "v${version}";
-    sha256 = "0wbz243q8028ljnh6nq3kxawiwpg5p2bwg1b23ibf7zbrhazcj4k";
+    sha256 = "1pwq2sfh7klcxismsqzgw80cp3cdkq9wv8x9g3h1zx1p66xpas9p";
   };
 
   propagatedBuildInputs = [ elementpath ];

pkgs/development/python-modules/yamllint/default.nix

@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "yamllint";
-  version = "1.19.0";
+  version = "1.20.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "05fg2i27bq40z83avmz3h91i206dx5k6nyyvpa5vja54sqg14q02";
+    sha256 = "1gx3f9wcf8af9cz2v3x3196pab34n8mlqk5iswahhzpxc9i2p4bn";
   };
 
   checkInputs = [ nose ];