From a163fde1a02a892e2e18ae55dd12dfc4cd58d0e0 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Sandro=20J=C3=A4ckel?= Date: Fri, 30 Oct 2020 10:35:14 +0100 Subject: [PATCH] python3Packages.HTSeq: Fix tests --- .../python-modules/HTSeq/default.nix | 20 +++++++++++++------ 1 file changed, 14 insertions(+), 6 deletions(-) diff --git a/pkgs/development/python-modules/HTSeq/default.nix b/pkgs/development/python-modules/HTSeq/default.nix index abb0c8520dd..83263f734bd 100644 --- a/pkgs/development/python-modules/HTSeq/default.nix +++ b/pkgs/development/python-modules/HTSeq/default.nix @@ -1,18 +1,26 @@ -{ stdenv, buildPythonPackage, fetchPypi, cython, numpy, pysam, matplotlib -}: +{ stdenv, buildPythonPackage, fetchFromGitHub, cython, numpy, pysam, matplotlib, python, isPy27, isPy3k }: buildPythonPackage rec { version = "0.12.4"; pname = "HTSeq"; - src = fetchPypi { - inherit pname version; - sha256 = "e3980bb4f12899442b4fa6f24f0ba149090f71cedb1eaf7128249afe4eb921ff"; + src = fetchFromGitHub { + owner = "htseq"; + repo = "htseq"; + rev = "release_${version}"; + sha256 = "0y7vh249sljqjnv81060w4xkdx6f1y5zdqkh38yk926x6v9riijm"; }; - buildInputs = [ cython numpy pysam ]; + nativeBuildInputs = [ cython ]; propagatedBuildInputs = [ numpy pysam matplotlib ]; + checkPhase = stdenv.lib.optionalString isPy27 '' + ${python.interpreter} python2/test/test_general.py + '' + stdenv.lib.optionalString isPy3k '' + ${python.interpreter} python3/test/test_general.py + ''; + meta = with stdenv.lib; { + homepage = "https://htseq.readthedocs.io/"; description = "A framework to work with high-throughput sequencing data"; maintainers = with maintainers; [ unode ]; platforms = platforms.unix;