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python3.pkgs.rpy2: fix tests with pandas 1.x

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This commit is contained in:
Timo Kaufmann 2020-03-17 11:52:01 +01:00
parent a2e06fc342
commit 9c8068c4c4
1 changed files with 9 additions and 0 deletions
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9
pkgs/development/python-modules/rpy2/default.nix
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@ -1,6 +1,7 @@
{ lib { lib
, python , python
, buildPythonPackage , buildPythonPackage
, fetchpatch
, fetchPypi , fetchPypi
, isPyPy , isPyPy
, R , R
@ -68,6 +69,14 @@ buildPythonPackage rec {
# R_LIBS_SITE is used by the nix r package to point to the installed R libraries. # R_LIBS_SITE is used by the nix r package to point to the installed R libraries.
# This patch sets R_LIBS_SITE when rpy2 is imported. # This patch sets R_LIBS_SITE when rpy2 is imported.
./rpy2-3.x-r-libs-site.patch ./rpy2-3.x-r-libs-site.patch
# pandas 1.x compatibility, already merged upstream
# https://github.com/rpy2/rpy2/issues/636
(fetchpatch {
name = "pandas-1.x.patch";
url = "https://github.com/rpy2/rpy2/commit/fbd060e364b70012e8d26cc74df04ee53f769379.patch";
sha256 = "19rdqydwjmqg25ibmsbx7lggrr9fsyjn283zgvz1wj4iyfjwp1za";
})
]; ];
postPatch = '' postPatch = ''
substituteInPlace 'rpy2/rinterface_lib/embedded.py' --replace '@NIX_R_LIBS_SITE@' "$R_LIBS_SITE" substituteInPlace 'rpy2/rinterface_lib/embedded.py' --replace '@NIX_R_LIBS_SITE@' "$R_LIBS_SITE"