Merge branch 'staging-next' into staging

.editorconfig

@@ -105,6 +105,9 @@ insert_final_newline = unset
 indent_size = unset
 trim_trailing_whitespace = unset
 
+[pkgs/tools/misc/timidity/timidity.cfg]
+trim_trailing_whitespace = unset
+
 [pkgs/top-level/emscripten-packages.nix]
 trim_trailing_whitespace = unset
 

.github/CONTRIBUTING.md

@@ -55,7 +55,7 @@ Follow these steps to backport a change into a release branch in compliance with
 1. Take note of the commits in which the change was introduced into `master` branch.
 2. Check out the target _release branch_, e.g. `release-20.03`. Do not use a _channel branch_ like `nixos-20.03` or `nixpkgs-20.03`.
 3. Create a branch for your change, e.g. `git checkout -b backport`.
-4. When the reason to backport is not obvious from the original commit message, use `git cherry-pick -xe <original commit>` and add a reason. Otherwise use `git cherry-pick -x <original commit>`. That's fine for minor version updates that only include security and bug fixes, commits that fixes an otherwise broken package or similar.
+4. When the reason to backport is not obvious from the original commit message, use `git cherry-pick -xe <original commit>` and add a reason. Otherwise use `git cherry-pick -x <original commit>`. That's fine for minor version updates that only include security and bug fixes, commits that fixes an otherwise broken package or similar. Please also ensure the commits exists on the master branch; in the case of squashed or rebased merges, the commit hash will change and the new commits can be found in the merge message at the bottom of the master pull request.
 5. Push to GitHub and open a backport pull request. Make sure to select the release branch (e.g. `release-20.03`) as the target branch of the pull request, and link to the pull request in which the original change was comitted to `master`. The pull request title should be the commit title with the release version as prefix, e.g. `[20.03]`.
 
 ## Reviewing contributions

flake.nix

@@ -5,7 +5,6 @@
 
   outputs = { self }:
     let
-
       jobs = import ./pkgs/top-level/release.nix {
         nixpkgs = self;
       };
@@ -28,10 +27,31 @@
       lib = lib.extend (final: prev: {
         nixosSystem = { modules, ... } @ args:
           import ./nixos/lib/eval-config.nix (args // {
-            modules = modules ++
-              [ { system.nixos.versionSuffix =
+            modules =
+              let
+                vmConfig = (import ./nixos/lib/eval-config.nix
+                  (args // {
+                    modules = modules ++ [ ./nixos/modules/virtualisation/qemu-vm.nix ];
+                  })).config;
+
+                vmWithBootLoaderConfig = (import ./nixos/lib/eval-config.nix
+                  (args // {
+                    modules = modules ++ [
+                      ./nixos/modules/virtualisation/qemu-vm.nix
+                      { virtualisation.useBootLoader = true; }
+                    ];
+                  })).config;
+              in
+              modules ++ [
+                {
+                  system.nixos.versionSuffix =
                     ".${final.substring 0 8 (self.lastModifiedDate or self.lastModified)}.${self.shortRev or "dirty"}";
                   system.nixos.revision = final.mkIf (self ? rev) self.rev;
+
+                  system.build = {
+                    vm = vmConfig.system.build.vm;
+                    vmWithBootLoader = vmWithBootLoaderConfig.system.build.vm;
+                  };
                 }
               ];
           });

nixos/modules/installer/tools/nixos-rebuild.sh

@@ -438,15 +438,17 @@ if [ -z "$rollback" ]; then
         if [[ -z $flake ]]; then
             pathToConfig="$(nixBuild '<nixpkgs/nixos>' -A vm -k "${extraBuildFlags[@]}")"
         else
-            echo "$0: 'build-vm' is not supported with '--flake'" >&2
-            exit 1
+            nix "${flakeFlags[@]}" build "$flake#$flakeAttr.config.system.build.vm" \
+              "${extraBuildFlags[@]}" "${lockFlags[@]}"
+            pathToConfig="$(readlink -f ./result)"
         fi
     elif [ "$action" = build-vm-with-bootloader ]; then
         if [[ -z $flake ]]; then
             pathToConfig="$(nixBuild '<nixpkgs/nixos>' -A vmWithBootLoader -k "${extraBuildFlags[@]}")"
         else
-            echo "$0: 'build-vm-with-bootloader' is not supported with '--flake'" >&2
-            exit 1
+            nix "${flakeFlags[@]}" build "$flake#$flakeAttr.config.system.build.vmWithBootLoader" \
+              "${extraBuildFlags[@]}" "${lockFlags[@]}"
+            pathToConfig="$(readlink -f ./result)"
         fi
     else
         showSyntax

pkgs/applications/audio/sunvox/default.nix

@@ -17,7 +17,7 @@ stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "http://www.warmplace.ru/soft/sunvox/sunvox-${version}.zip";
-    sha256 = "15pyc3dk4dqlivgzki8sv7xpwg3bbn5xv9338g16a0dbn7s3kich";
+    sha256 = "04f7psm0lvc09nw7d2wp0sncf37bym2v7hhxp4v8c8gdgayj7k8m";
   };
 
   buildInputs = [ unzip ];

pkgs/applications/editors/emacs-modes/melpa-packages.nix

@@ -196,6 +196,26 @@ let
 
         ivy-rtags = fix-rtags super.ivy-rtags;
 
+        libgit = super.libgit.overrideAttrs(attrs: {
+          nativeBuildInputs = (attrs.nativeBuildInputs or []) ++ [ pkgs.cmake ];
+          buildInputs = attrs.buildInputs ++ [ pkgs.libgit2 ];
+          dontUseCmakeBuildDir = true;
+          postPatch = ''
+            sed -i s/'add_subdirectory(libgit2)'// CMakeLists.txt
+          '';
+          postBuild = ''
+            pushd working/libgit
+            make
+            popd
+          '';
+          postInstall = ''
+            outd=$(echo $out/share/emacs/site-lisp/elpa/libgit-**)
+            mkdir $outd/build
+            install -m444 -t $outd/build ./source/src/libegit2.so
+            rm -r $outd/src $outd/Makefile $outd/CMakeLists.txt
+          '';
+        });
+
         magit = super.magit.overrideAttrs (attrs: {
           # searches for Git at build time
           nativeBuildInputs =

pkgs/applications/misc/qcad/default.nix

@@ -1,12 +1,16 @@
 { boost
 , fetchFromGitHub
+, libGLU
 , mkDerivationWith
 , muparser
 , pkgconfig
+, qtbase
 , qmake
-, qt5
+, qtscript
+, qtsvg
+, qtxmlpatterns
+, qttools
 , stdenv
-, libGLU
 }:
 
 mkDerivationWith stdenv.mkDerivation rec {
@@ -25,11 +29,11 @@ mkDerivationWith stdenv.mkDerivation rec {
   ];
 
   postPatch = ''
-    if ! [ -d src/3rdparty/qt-labs-qtscriptgenerator-${qt5.qtbase.version} ]; then
-      mkdir src/3rdparty/qt-labs-qtscriptgenerator-${qt5.qtbase.version}
+    if ! [ -d src/3rdparty/qt-labs-qtscriptgenerator-${qtbase.version} ]; then
+      mkdir src/3rdparty/qt-labs-qtscriptgenerator-${qtbase.version}
       cp \
         src/3rdparty/qt-labs-qtscriptgenerator-5.14.0/qt-labs-qtscriptgenerator-5.14.0.pro \
-        src/3rdparty/qt-labs-qtscriptgenerator-${qt5.qtbase.version}/qt-labs-qtscriptgenerator-${qt5.qtbase.version}.pro
+        src/3rdparty/qt-labs-qtscriptgenerator-${qtbase.version}/qt-labs-qtscriptgenerator-${qtbase.version}.pro
     fi
  '';
 
@@ -63,7 +67,7 @@ mkDerivationWith stdenv.mkDerivation rec {
 
     # workaround to fix the library browser:
     rm -r $out/lib/plugins/sqldrivers
-    ln -s -t $out/lib/plugins ${qt5.qtbase}/${qt5.qtbase.qtPluginPrefix}/sqldrivers
+    ln -s -t $out/lib/plugins ${qtbase}/${qtbase.qtPluginPrefix}/sqldrivers
 
     install -Dm644 scripts/qcad_icon.svg $out/share/icons/hicolor/scalable/apps/qcad.svg
 
@@ -74,16 +78,16 @@ mkDerivationWith stdenv.mkDerivation rec {
     boost
     muparser
     libGLU
-    qt5.qtbase
-    qt5.qtscript
-    qt5.qtsvg
-    qt5.qtxmlpatterns
+    qtbase
+    qtscript
+    qtsvg
+    qtxmlpatterns
   ];
 
   nativeBuildInputs = [
     pkgconfig
-    qt5.qmake
-    qt5.qttools
+    qmake
+    qttools
   ];
 
   enableParallelBuilding = true;
@@ -93,6 +97,6 @@ mkDerivationWith stdenv.mkDerivation rec {
     homepage = "https://qcad.org";
     license = licenses.gpl3;
     maintainers = with maintainers; [ yvesf ];
-    platforms = qt5.qtbase.meta.platforms;
+    platforms = qtbase.meta.platforms;
   };
 }

pkgs/applications/version-management/git-and-tools/git-machete/default.nix

@@ -4,11 +4,11 @@
 
 buildPythonApplication rec {
   pname = "git-machete";
-  version = "2.15.5";
+  version = "2.15.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "11an0hwva1jlf9y7vd9mscs4g6lzja1rwizsani6411xs6m121a3";
+    sha256 = "0ajb3m3i3pfc5v3gshglk7qphk1rpniwx8q8isgx1a6cyarzr9bd";
   };
 
   nativeBuildInputs = [ installShellFiles pbr ];

pkgs/development/libraries/vmmlib/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, cmake, pkgconfig, boost, blas
+{ stdenv, fetchFromGitHub, cmake, pkgconfig, boost, lapack
 , Accelerate, CoreGraphics, CoreVideo
 }:
 
@@ -18,7 +18,7 @@ stdenv.mkDerivation rec {
   ];
 
   nativeBuildInputs = [ pkgconfig cmake ];
-  buildInputs = [ boost blas ]
+  buildInputs = [ boost lapack ]
     ++ stdenv.lib.optionals stdenv.isDarwin [ Accelerate CoreGraphics CoreVideo ];
 
   enableParallelBuilding = true;
@@ -43,4 +43,3 @@ stdenv.mkDerivation rec {
     platforms   = platforms.all;
   };
 }
-

pkgs/development/python-modules/cfn-lint/default.nix

@@ -1,28 +1,34 @@
 { lib
 , buildPythonPackage
-, fetchPypi
+, fetchFromGitHub
 , pythonOlder
-, pyyaml
-, six
-, requests
 , aws-sam-translator
 , importlib-metadata
 , importlib-resources
 , jsonpatch
 , jsonschema
-, pathlib2
-, setuptools
 , junit-xml
 , networkx
+, pathlib2
+, pyyaml
+, requests
+, setuptools
+, six
+# Test inputs
+, pytestCheckHook
+, mock
+, pydot
 }:
 
 buildPythonPackage rec {
   pname = "cfn-lint";
-  version = "0.35.0";
+  version = "0.35.1";
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "42023d89520e3a29891ec2eb4c326eef9d1f7516fe9abee8b6c97ce064187b45";
+  src = fetchFromGitHub {
+    owner = "aws-cloudformation";
+    repo  = "cfn-python-lint";
+    rev = "v${version}";
+    sha256 = "1ajb0412hw9fg9m4b3xbpfbp8cixmnpjxrkaks6k749xinzsv7qk";
   };
 
   postPatch = ''
@@ -30,20 +36,18 @@ buildPythonPackage rec {
   '';
 
   propagatedBuildInputs = [
-    pyyaml
-    six
-    requests
     aws-sam-translator
     jsonpatch
     jsonschema
-    pathlib2
-    setuptools
     junit-xml
     networkx
+    pathlib2
+    pyyaml
+    requests
+    setuptools
+    six
   ] ++ lib.optionals (pythonOlder "3.8") [ importlib-metadata importlib-resources ];
 
-  # No tests included in archive
-  doCheck = false;
   pythonImportsCheck = [
     "cfnlint"
     "cfnlint.conditions"
@@ -60,9 +64,13 @@ buildPythonPackage rec {
     "cfnlint.transform"
   ];
 
+  checkInputs = [ pytestCheckHook mock pydot ];
+  preCheck = "export PATH=$out/bin:$PATH";
+
   meta = with lib; {
     description = "Checks cloudformation for practices and behaviour that could potentially be improved";
     homepage = "https://github.com/aws-cloudformation/cfn-python-lint";
+    changelog = "https://github.com/aws-cloudformation/cfn-python-lint/blob/master/CHANGELOG.md";
     license = licenses.mit;
   };
 }

pkgs/development/python-modules/netaddr/default.nix

@@ -1,41 +1,32 @@
 { stdenv
 , buildPythonPackage
 , fetchPypi
-, pytest
-, fetchpatch
+, pythonOlder
 , glibcLocales
+, importlib-resources
+, pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "netaddr";
-  version = "0.7.19";
+  version = "0.8.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "38aeec7cdd035081d3a4c306394b19d677623bf76fa0913f6695127c7753aefd";
+    sha256 = "0hx2npi0wnhwlcybilgwlddw6qffx1mb7a3sj4p9s7bvl33mgk6n";
   };
 
   LC_ALL = "en_US.UTF-8";
-  checkInputs = [ glibcLocales pytest ];
 
-  checkPhase = ''
-    # fails on python3.7: https://github.com/drkjam/netaddr/issues/182
-    py.test \
-      -k 'not test_ip_splitter_remove_prefix_larger_than_input_range' \
-      netaddr/tests
-  '';
+  propagatedBuildInputs = stdenv.lib.optionals (pythonOlder "3.7") [ importlib-resources ];
 
-  patches = [
-    (fetchpatch {
-      url = "https://github.com/drkjam/netaddr/commit/2ab73f10be7069c9412e853d2d0caf29bd624012.patch";
-      sha256 = "0s1cdn9v5alpviabhcjmzc0m2pnpq9dh2fnnk2x96dnry1pshg39";
-    })
-  ];
+  checkInputs = [ glibcLocales pytestCheckHook ];
 
   meta = with stdenv.lib; {
-    homepage = "https://github.com/drkjam/netaddr/";
+    homepage = "https://netaddr.readthedocs.io/en/latest/";
+    downloadPage = "https://github.com/netaddr/netaddr/releases";
+    changelog = "https://netaddr.readthedocs.io/en/latest/changes.html";
     description = "A network address manipulation library for Python";
     license = licenses.mit;
   };
-
 }

pkgs/development/python-modules/pyspice/default.nix

@@ -0,0 +1,51 @@
+{ stdenv
+, buildPythonPackage
+, fetchPypi
+, libngspice
+, numpy
+, ply
+, scipy
+, pyyaml
+, cffi
+, requests
+, matplotlib
+, setuptools
+}:
+
+buildPythonPackage rec {
+  pname = "PySpice";
+  version = "1.4.3";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0mnyy8nr06d1al99kniyqcm0p9a8dvkg719s42sajl8yf51sayc9";
+  };
+
+  propagatedBuildInputs = [
+    setuptools
+    requests
+    pyyaml
+    cffi
+    matplotlib
+    numpy
+    ply
+    scipy
+    libngspice
+  ];
+
+  doCheck = false;
+  pythonImportsCheck = [ "PySpice" ];
+
+  postPatch = ''
+    substituteInPlace PySpice/Spice/NgSpice/Shared.py --replace \
+        "ffi.dlopen(self.library_path)" \
+        "ffi.dlopen('${libngspice}/lib/libngspice${stdenv.hostPlatform.extensions.sharedLibrary}')"
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Simulate electronic circuit using Python and the Ngspice / Xyce simulators";
+    homepage = "https://github.com/FabriceSalvaire/PySpice";
+    license = licenses.gpl3Only;
+    maintainers = with maintainers; [ matthuszagh ];
+  };
+}

pkgs/development/python-modules/scikit-optimize/default.nix

@@ -1,25 +1,29 @@
 { lib
+, isPy27
 , buildPythonPackage
 , fetchFromGitHub
+, matplotlib
 , numpy
 , scipy
 , scikitlearn
 , pyaml
-, pytest
+, pytestCheckHook
 }:
 
 buildPythonPackage rec {
   pname = "scikit-optimize";
-  version = "0.6";
+  version = "0.8.1";
+  disabled = isPy27;
 
   src = fetchFromGitHub {
     owner = "scikit-optimize";
     repo = "scikit-optimize";
     rev = "v${version}";
-    sha256 = "1srbb20k8ddhpcfxwdflapfh6xfyrd3dnclcg3bsfq1byrcmv0d4";
+    sha256 = "1bz8gxccx8n99abw49j8h5zf3i568g5hcf8nz1yinma8jqhxjkjh";
   };
 
   propagatedBuildInputs = [
+    matplotlib
     numpy
     scipy
     scikitlearn
@@ -27,14 +31,9 @@ buildPythonPackage rec {
   ];
 
   checkInputs = [
-    pytest
+    pytestCheckHook
   ];
 
-  # remove --ignore at next release > 0.6
-  checkPhase = ''
-    pytest skopt --ignore skopt/tests/test_searchcv.py
-  '';
-
   meta = with lib; {
     description = "Sequential model-based optimization toolbox";
     homepage = "https://scikit-optimize.github.io/";

pkgs/top-level/python-packages.nix

@@ -5383,6 +5383,8 @@ in {
 
   pyspf = callPackage ../development/python-modules/pyspf { };
 
+  pyspice = callPackage ../development/python-modules/pyspice { };
+
   pyspinel = callPackage ../development/python-modules/pyspinel { };
 
   pyspotify = callPackage ../development/python-modules/pyspotify { };