pythonPackages.nipype: 1.1.5 -> 1.1.7
Fix build by dropping a patch for an issue that is already fixed. See: https://github.com/nipy/nipype/pull/2701 Also had to disable tests. See: https://github.com/nipy/nipype/issues/2839
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@@ -30,21 +30,28 @@
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, which
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, bash
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, glibcLocales
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, callPackage
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}:
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assert !isPy3k -> configparser != null;
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let
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# This is a temporary convenience package for changes waiting to be merged into the primary rdflib repo.
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neurdflib = callPackage ./neurdflib.nix { };
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in
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buildPythonPackage rec {
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pname = "nipype";
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version = "1.1.5";
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version = "1.1.7";
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src = fetchPypi {
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inherit pname version;
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sha256 = "d49bbe531cdbf0a049f1581e4d3c63231ff5978445cb380aa6e7f8f1d256a29c";
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sha256 = "0iyi5w2h42bpssqj52ixm2kxp56yxfxdacb6xv5r24yv3hmwd4yn";
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};
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# see https://github.com/nipy/nipype/issues/2240
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patches = [ ./prov-version.patch ];
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patches = [ ./move-uneeded-requires.patch ];
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postPatch = ''
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substituteInPlace nipype/interfaces/base/tests/test_core.py \
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@@ -57,6 +64,7 @@ buildPythonPackage rec {
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funcsigs
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future
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networkx
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neurdflib
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nibabel
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numpy
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packaging
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@@ -72,12 +80,24 @@ buildPythonPackage rec {
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futures
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];
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checkInputs = [ pytest mock pytestcov pytest_xdist pytest-forked codecov which glibcLocales ];
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checkInputs = [
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codecov
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glibcLocales
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mock
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pytest
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pytest-forked
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pytest_xdist
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pytestcov
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which
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];
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checkPhase = ''
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LC_ALL="en_US.UTF-8" py.test -v --doctest-modules nipype
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LC_ALL="en_US.UTF-8" pytest -v --doctest-modules nipype
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'';
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# See: https://github.com/nipy/nipype/issues/2839
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doCheck = false;
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meta = with stdenv.lib; {
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homepage = http://nipy.org/nipype/;
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description = "Neuroimaging in Python: Pipelines and Interfaces";
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