Merge branch 'staging-next' into staging

doc/contributing/submitting-changes.xml

@@ -228,6 +228,33 @@ Additional information.
    </listitem>
   </itemizedlist>
  </section>
+ <section xml:id="submitting-changes-submitting-security-fixes">
+  <title>Submitting security fixes</title>
+
+  <para>
+   Security fixes are submitted in the same way as other changes and thus the same guidelines apply.
+  </para>
+
+  <para>
+   If the security fix comes in the form of a patch and a CVE is available, then the name of the patch should be the CVE identifier, so e.g. <literal>CVE-2019-13636.patch</literal> in the case of a patch that is included in the Nixpkgs tree. If a patch is fetched the name needs to be set as well, e.g.:
+  </para>
+
+<programlisting>
+   (fetchpatch {
+     name = "CVE-2019-11068.patch";
+     url = "https://gitlab.gnome.org/GNOME/libxslt/commit/e03553605b45c88f0b4b2980adfbbb8f6fca2fd6.patch";
+     sha256 = "0pkpb4837km15zgg6h57bncp66d5lwrlvkr73h0lanywq7zrwhj8";
+   })
+  </programlisting>
+
+  <para>
+   If a security fix applies to both master and a stable release then, similar to regular changes, they are preferably delivered via master first and cherry-picked to the release branch.
+  </para>
+
+  <para>
+   Critical security fixes may by-pass the staging branches and be delivered directly to release branches such as <literal>master</literal> and <literal>release-*</literal>.
+  </para>
+ </section>
  <section xml:id="submitting-changes-pull-request-template">
   <title>Pull Request Template</title>
 
@@ -298,12 +325,17 @@ Additional information.
 
    <para>
     review changes from pull request number 12345:
-<screen>nix-shell -p nix-review --run "nix-review pr 12345"</screen>
+    <screen>nix run nixpkgs.nix-review -c nix-review pr 12345</screen>
    </para>
 
    <para>
     review uncommitted changes:
-<screen>nix-shell -p nix-review --run "nix-review wip"</screen>
+    <screen>nix run nixpkgs.nix-review -c nix-review wip</screen>
+   </para>
+
+   <para>
+    review changes from last commit:
+    <screen>nix run nixpkgs.nix-review -c nix-review rev HEAD</screen>
    </para>
   </section>
 

doc/languages-frameworks/haskell.section.md

@@ -398,7 +398,9 @@ nix:
 For more on how to write a `shell.nix` file see the below section. You'll need
 to express a derivation. Note that Nixpkgs ships with a convenience wrapper
 function around `mkDerivation` called `haskell.lib.buildStackProject` to help you
-create this derivation in exactly the way Stack expects. All of the same inputs
+create this derivation in exactly the way Stack expects. However for this to work
+you need to disable the sandbox, which you can do by using `--option sandbox relaxed`
+or `--option sandbox false` to the Nix command. All of the same inputs
 as `mkDerivation` can be provided. For example, to build a Stack project that
 including packages that link against a version of the R library compiled with
 special options turned on:

doc/languages-frameworks/python.section.md

@@ -144,6 +144,24 @@ What's happening here?
 2. Then we create a Python 3.5 environment with the `withPackages` function.
 3. The `withPackages` function expects us to provide a function as an argument that takes the set of all python packages and returns a list of packages to include in the environment. Here, we select the packages `numpy` and `toolz` from the package set.
 
+To combine this with `mkShell` you can:
+
+```nix
+with import <nixpkgs> {};
+
+let
+  pythonEnv = python35.withPackages (ps: [
+    ps.numpy
+    ps.toolz
+  ]);
+in mkShell {
+  buildInputs = [
+    pythonEnv
+    hello
+  ];
+}
+```
+
 ##### Execute command with `--run`
 A convenient option with `nix-shell` is the `--run`
 option, with which you can execute a command in the `nix-shell`. We can

maintainers/maintainer-list.nix

@@ -731,6 +731,16 @@
     githubId = 135230;
     name = "Aycan iRiCAN";
   };
+  b4dm4n = {
+    email = "fabianm88@gmail.com";
+    github = "B4dM4n";
+    githubId = 448169;
+    name = "Fabian Möller";
+    keys = [{
+      longkeyid = "rsa4096/0x754B5C0963C42C5";
+      fingerprint = "6309 E212 29D4 DA30 AF24  BDED 754B 5C09 63C4 2C50";
+    }];
+  };
   babariviere = {
     email = "babathriviere@gmail.com";
     github = "babariviere";
@@ -4496,6 +4506,10 @@
     github = "moredread";
     githubId = 100848;
     name = "André-Patrick Bubel";
+    keys = [{
+      longkeyid = "rsa8192/0x118CE7C424B45728";
+      fingerprint = "4412 38AD CAD3 228D 876C  5455 118C E7C4 24B4 5728";
+    }];
   };
   moretea = {
     email = "maarten@moretea.nl";

nixos/lib/test-driver/test-driver.py

@@ -1,6 +1,5 @@
 #! /somewhere/python3
-
-from contextlib import contextmanager
+from contextlib import contextmanager, _GeneratorContextManager
 from xml.sax.saxutils import XMLGenerator
 import _thread
 import atexit
@@ -8,7 +7,7 @@ import json
 import os
 import ptpython.repl
 import pty
-import queue
+from queue import Queue, Empty
 import re
 import shutil
 import socket
@@ -17,6 +16,7 @@ import sys
 import tempfile
 import time
 import unicodedata
+from typing import Tuple, TextIO, Any, Callable, Dict, Iterator, Optional, List
 
 CHAR_TO_KEY = {
     "A": "shift-a",
@@ -81,12 +81,18 @@ CHAR_TO_KEY = {
     ")": "shift-0x0B",
 }
 
+# Forward references
+nr_tests: int
+nr_succeeded: int
+log: "Logger"
+machines: "List[Machine]"
 
-def eprint(*args, **kwargs):
+
+def eprint(*args: object, **kwargs: Any) -> None:
     print(*args, file=sys.stderr, **kwargs)
 
 
-def create_vlan(vlan_nr):
+def create_vlan(vlan_nr: str) -> Tuple[str, str, "subprocess.Popen[bytes]", Any]:
     global log
     log.log("starting VDE switch for network {}".format(vlan_nr))
     vde_socket = os.path.abspath("./vde{}.ctl".format(vlan_nr))
@@ -110,7 +116,7 @@ def create_vlan(vlan_nr):
     return (vlan_nr, vde_socket, vde_process, fd)
 
 
-def retry(fn):
+def retry(fn: Callable) -> None:
     """Call the given function repeatedly, with 1 second intervals,
     until it returns True or a timeout is reached.
     """
@@ -125,52 +131,52 @@ def retry(fn):
 
 
 class Logger:
-    def __init__(self):
+    def __init__(self) -> None:
         self.logfile = os.environ.get("LOGFILE", "/dev/null")
         self.logfile_handle = open(self.logfile, "wb")
         self.xml = XMLGenerator(self.logfile_handle, encoding="utf-8")
-        self.queue = queue.Queue(1000)
+        self.queue: "Queue[Dict[str, str]]" = Queue(1000)
 
         self.xml.startDocument()
         self.xml.startElement("logfile", attrs={})
 
-    def close(self):
+    def close(self) -> None:
         self.xml.endElement("logfile")
         self.xml.endDocument()
         self.logfile_handle.close()
 
-    def sanitise(self, message):
+    def sanitise(self, message: str) -> str:
         return "".join(ch for ch in message if unicodedata.category(ch)[0] != "C")
 
-    def maybe_prefix(self, message, attributes):
+    def maybe_prefix(self, message: str, attributes: Dict[str, str]) -> str:
         if "machine" in attributes:
             return "{}: {}".format(attributes["machine"], message)
         return message
 
-    def log_line(self, message, attributes):
+    def log_line(self, message: str, attributes: Dict[str, str]) -> None:
         self.xml.startElement("line", attributes)
         self.xml.characters(message)
         self.xml.endElement("line")
 
-    def log(self, message, attributes={}):
+    def log(self, message: str, attributes: Dict[str, str] = {}) -> None:
         eprint(self.maybe_prefix(message, attributes))
         self.drain_log_queue()
         self.log_line(message, attributes)
 
-    def enqueue(self, message):
+    def enqueue(self, message: Dict[str, str]) -> None:
         self.queue.put(message)
 
-    def drain_log_queue(self):
+    def drain_log_queue(self) -> None:
         try:
             while True:
                 item = self.queue.get_nowait()
                 attributes = {"machine": item["machine"], "type": "serial"}
                 self.log_line(self.sanitise(item["msg"]), attributes)
-        except queue.Empty:
+        except Empty:
             pass
 
     @contextmanager
-    def nested(self, message, attributes={}):
+    def nested(self, message: str, attributes: Dict[str, str] = {}) -> Iterator[None]:
         eprint(self.maybe_prefix(message, attributes))
 
         self.xml.startElement("nest", attrs={})
@@ -189,24 +195,22 @@ class Logger:
 
 
 class Machine:
-    def __init__(self, args):
+    def __init__(self, args: Dict[str, Any]) -> None:
         if "name" in args:
             self.name = args["name"]
         else:
             self.name = "machine"
-            try:
-                cmd = args["startCommand"]
-                self.name = re.search("run-(.+)-vm$", cmd).group(1)
-            except KeyError:
-                pass
-            except AttributeError:
-                pass
+            cmd = args.get("startCommand", None)
+            if cmd:
+                match = re.search("run-(.+)-vm$", cmd)
+                if match:
+                    self.name = match.group(1)
 
         self.script = args.get("startCommand", self.create_startcommand(args))
 
         tmp_dir = os.environ.get("TMPDIR", tempfile.gettempdir())
 
-        def create_dir(name):
+        def create_dir(name: str) -> str:
             path = os.path.join(tmp_dir, name)
             os.makedirs(path, mode=0o700, exist_ok=True)
             return path
@@ -216,14 +220,14 @@ class Machine:
 
         self.booted = False
         self.connected = False
-        self.pid = None
+        self.pid: Optional[int] = None
         self.socket = None
-        self.monitor = None
-        self.logger = args["log"]
+        self.monitor: Optional[socket.socket] = None
+        self.logger: Logger = args["log"]
         self.allow_reboot = args.get("allowReboot", False)
 
     @staticmethod
-    def create_startcommand(args):
+    def create_startcommand(args: Dict[str, str]) -> str:
         net_backend = "-netdev user,id=net0"
         net_frontend = "-device virtio-net-pci,netdev=net0"
 
@@ -273,30 +277,32 @@ class Machine:
 
         return start_command
 
-    def is_up(self):
+    def is_up(self) -> bool:
         return self.booted and self.connected
 
-    def log(self, msg):
+    def log(self, msg: str) -> None:
         self.logger.log(msg, {"machine": self.name})
 
-    def nested(self, msg, attrs={}):
+    def nested(self, msg: str, attrs: Dict[str, str] = {}) -> _GeneratorContextManager:
         my_attrs = {"machine": self.name}
         my_attrs.update(attrs)
         return self.logger.nested(msg, my_attrs)
 
-    def wait_for_monitor_prompt(self):
+    def wait_for_monitor_prompt(self) -> str:
+        assert self.monitor is not None
         while True:
             answer = self.monitor.recv(1024).decode()
             if answer.endswith("(qemu) "):
                 return answer
 
-    def send_monitor_command(self, command):
+    def send_monitor_command(self, command: str) -> str:
         message = ("{}\n".format(command)).encode()
         self.log("sending monitor command: {}".format(command))
+        assert self.monitor is not None
         self.monitor.send(message)
         return self.wait_for_monitor_prompt()
 
-    def wait_for_unit(self, unit, user=None):
+    def wait_for_unit(self, unit: str, user: Optional[str] = None) -> bool:
         while True:
             info = self.get_unit_info(unit, user)
             state = info["ActiveState"]
@@ -316,7 +322,7 @@ class Machine:
             if state == "active":
                 return True
 
-    def get_unit_info(self, unit, user=None):
+    def get_unit_info(self, unit: str, user: Optional[str] = None) -> Dict[str, str]:
         status, lines = self.systemctl('--no-pager show "{}"'.format(unit), user)
         if status != 0:
             raise Exception(
@@ -327,8 +333,9 @@ class Machine:
 
         line_pattern = re.compile(r"^([^=]+)=(.*)$")
 
-        def tuple_from_line(line):
+        def tuple_from_line(line: str) -> Tuple[str, str]:
             match = line_pattern.match(line)
+            assert match is not None
             return match[1], match[2]
 
         return dict(
@@ -337,7 +344,7 @@ class Machine:
             if line_pattern.match(line)
         )
 
-    def systemctl(self, q, user=None):
+    def systemctl(self, q: str, user: Optional[str] = None) -> Tuple[int, str]:
         if user is not None:
             q = q.replace("'", "\\'")
             return self.execute(
@@ -349,7 +356,7 @@ class Machine:
             )
         return self.execute("systemctl {}".format(q))
 
-    def require_unit_state(self, unit, require_state="active"):
+    def require_unit_state(self, unit: str, require_state: str = "active") -> None:
         with self.nested(
             "checking if unit ‘{}’ has reached state '{}'".format(unit, require_state)
         ):
@@ -361,7 +368,7 @@ class Machine:
                     + "'active' but it is in state ‘{}’".format(state)
                 )
 
-    def execute(self, command):
+    def execute(self, command: str) -> Tuple[int, str]:
         self.connect()
 
         out_command = "( {} ); echo '|!EOF' $?\n".format(command)
@@ -379,7 +386,7 @@ class Machine:
                 return (status_code, output)
             output += chunk
 
-    def succeed(self, *commands):
+    def succeed(self, *commands: str) -> str:
         """Execute each command and check that it succeeds."""
         output = ""
         for command in commands:
@@ -393,7 +400,7 @@ class Machine:
                 output += out
         return output
 
-    def fail(self, *commands):
+    def fail(self, *commands: str) -> None:
         """Execute each command and check that it fails."""
         for command in commands:
             with self.nested("must fail: {}".format(command)):
@@ -403,21 +410,21 @@ class Machine:
                         "command `{}` unexpectedly succeeded".format(command)
                     )
 
-    def wait_until_succeeds(self, command):
+    def wait_until_succeeds(self, command: str) -> str:
         with self.nested("waiting for success: {}".format(command)):
             while True:
                 status, output = self.execute(command)
                 if status == 0:
                     return output
 
-    def wait_until_fails(self, command):
+    def wait_until_fails(self, command: str) -> str:
         with self.nested("waiting for failure: {}".format(command)):
             while True:
                 status, output = self.execute(command)
                 if status != 0:
                     return output
 
-    def wait_for_shutdown(self):
+    def wait_for_shutdown(self) -> None:
         if not self.booted:
             return
 
@@ -429,14 +436,14 @@ class Machine:
             self.booted = False
             self.connected = False
 
-    def get_tty_text(self, tty):
+    def get_tty_text(self, tty: str) -> str:
         status, output = self.execute(
             "fold -w$(stty -F /dev/tty{0} size | "
             "awk '{{print $2}}') /dev/vcs{0}".format(tty)
         )
         return output
 
-    def wait_until_tty_matches(self, tty, regexp):
+    def wait_until_tty_matches(self, tty: str, regexp: str) -> bool:
         matcher = re.compile(regexp)
         with self.nested("waiting for {} to appear on tty {}".format(regexp, tty)):
             while True:
@@ -444,43 +451,43 @@ class Machine:
                 if len(matcher.findall(text)) > 0:
                     return True
 
-    def send_chars(self, chars):
+    def send_chars(self, chars: List[str]) -> None:
         with self.nested("sending keys ‘{}‘".format(chars)):
             for char in chars:
                 self.send_key(char)
 
-    def wait_for_file(self, filename):
+    def wait_for_file(self, filename: str) -> bool:
         with self.nested("waiting for file ‘{}‘".format(filename)):
             while True:
                 status, _ = self.execute("test -e {}".format(filename))
                 if status == 0:
                     return True
 
-    def wait_for_open_port(self, port):
-        def port_is_open(_):
+    def wait_for_open_port(self, port: int) -> None:
+        def port_is_open(_: Any) -> bool:
             status, _ = self.execute("nc -z localhost {}".format(port))
             return status == 0
 
         with self.nested("waiting for TCP port {}".format(port)):
             retry(port_is_open)
 
-    def wait_for_closed_port(self, port):
-        def port_is_closed(_):
+    def wait_for_closed_port(self, port: int) -> None:
+        def port_is_closed(_: Any) -> bool:
             status, _ = self.execute("nc -z localhost {}".format(port))
             return status != 0
 
         retry(port_is_closed)
 
-    def start_job(self, jobname, user=None):
+    def start_job(self, jobname: str, user: Optional[str] = None) -> Tuple[int, str]:
         return self.systemctl("start {}".format(jobname), user)
 
-    def stop_job(self, jobname, user=None):
+    def stop_job(self, jobname: str, user: Optional[str] = None) -> Tuple[int, str]:
         return self.systemctl("stop {}".format(jobname), user)
 
-    def wait_for_job(self, jobname):
+    def wait_for_job(self, jobname: str) -> bool:
         return self.wait_for_unit(jobname)
 
-    def connect(self):
+    def connect(self) -> None:
         if self.connected:
             return
 
@@ -496,7 +503,7 @@ class Machine:
             self.log("(connecting took {:.2f} seconds)".format(toc - tic))
             self.connected = True
 
-    def screenshot(self, filename):
+    def screenshot(self, filename: str) -> None:
         out_dir = os.environ.get("out", os.getcwd())
         word_pattern = re.compile(r"^\w+$")
         if word_pattern.match(filename):
@@ -513,12 +520,12 @@ class Machine:
             if ret.returncode != 0:
                 raise Exception("Cannot convert screenshot")
 
-    def dump_tty_contents(self, tty):
+    def dump_tty_contents(self, tty: str) -> None:
         """Debugging: Dump the contents of the TTY<n>
         """
         self.execute("fold -w 80 /dev/vcs{} | systemd-cat".format(tty))
 
-    def get_screen_text(self):
+    def get_screen_text(self) -> str:
         if shutil.which("tesseract") is None:
             raise Exception("get_screen_text used but enableOCR is false")
 
@@ -546,30 +553,30 @@ class Machine:
 
                 return ret.stdout.decode("utf-8")
 
-    def wait_for_text(self, regex):
-        def screen_matches(last):
+    def wait_for_text(self, regex: str) -> None:
+        def screen_matches(last: bool) -> bool:
             text = self.get_screen_text()
-            m = re.search(regex, text)
+            matches = re.search(regex, text) is not None
 
-            if last and not m:
+            if last and not matches:
                 self.log("Last OCR attempt failed. Text was: {}".format(text))
 
-            return m
+            return matches
 
         with self.nested("waiting for {} to appear on screen".format(regex)):
             retry(screen_matches)
 
-    def send_key(self, key):
+    def send_key(self, key: str) -> None:
         key = CHAR_TO_KEY.get(key, key)
         self.send_monitor_command("sendkey {}".format(key))
 
-    def start(self):
+    def start(self) -> None:
         if self.booted:
             return
 
         self.log("starting vm")
 
-        def create_socket(path):
+        def create_socket(path: str) -> socket.socket:
             if os.path.exists(path):
                 os.unlink(path)
             s = socket.socket(family=socket.AF_UNIX, type=socket.SOCK_STREAM)
@@ -619,9 +626,9 @@ class Machine:
         self.monitor, _ = self.monitor_socket.accept()
         self.shell, _ = self.shell_socket.accept()
 
-        def process_serial_output():
-            for line in self.process.stdout:
-                line = line.decode("unicode_escape").replace("\r", "").rstrip()
+        def process_serial_output() -> None:
+            for _line in self.process.stdout:
+                line = _line.decode("unicode_escape").replace("\r", "").rstrip()
                 eprint("{} # {}".format(self.name, line))
                 self.logger.enqueue({"msg": line, "machine": self.name})
 
@@ -634,14 +641,14 @@ class Machine:
 
         self.log("QEMU running (pid {})".format(self.pid))
 
-    def shutdown(self):
+    def shutdown(self) -> None:
         if not self.booted:
             return
 
         self.shell.send("poweroff\n".encode())
         self.wait_for_shutdown()
 
-    def crash(self):
+    def crash(self) -> None:
         if not self.booted:
             return
 
@@ -649,7 +656,7 @@ class Machine:
         self.send_monitor_command("quit")
         self.wait_for_shutdown()
 
-    def wait_for_x(self):
+    def wait_for_x(self) -> None:
         """Wait until it is possible to connect to the X server.  Note that
         testing the existence of /tmp/.X11-unix/X0 is insufficient.
         """
@@ -666,15 +673,15 @@ class Machine:
                 if status == 0:
                     return
 
-    def get_window_names(self):
+    def get_window_names(self) -> List[str]:
         return self.succeed(
             r"xwininfo -root -tree | sed 's/.*0x[0-9a-f]* \"\([^\"]*\)\".*/\1/; t; d'"
         ).splitlines()
 
-    def wait_for_window(self, regexp):
+    def wait_for_window(self, regexp: str) -> None:
         pattern = re.compile(regexp)
 
-        def window_is_visible(last_try):
+        def window_is_visible(last_try: bool) -> bool:
             names = self.get_window_names()
             if last_try:
                 self.log(
@@ -687,10 +694,10 @@ class Machine:
         with self.nested("Waiting for a window to appear"):
             retry(window_is_visible)
 
-    def sleep(self, secs):
+    def sleep(self, secs: int) -> None:
         time.sleep(secs)
 
-    def forward_port(self, host_port=8080, guest_port=80):
+    def forward_port(self, host_port: int = 8080, guest_port: int = 80) -> None:
         """Forward a TCP port on the host to a TCP port on the guest.
         Useful during interactive testing.
         """
@@ -698,43 +705,46 @@ class Machine:
             "hostfwd_add tcp::{}-:{}".format(host_port, guest_port)
         )
 
-    def block(self):
+    def block(self) -> None:
         """Make the machine unreachable by shutting down eth1 (the multicast
         interface used to talk to the other VMs).  We keep eth0 up so that
         the test driver can continue to talk to the machine.
         """
         self.send_monitor_command("set_link virtio-net-pci.1 off")
 
-    def unblock(self):
+    def unblock(self) -> None:
         """Make the machine reachable.
         """
         self.send_monitor_command("set_link virtio-net-pci.1 on")
 
 
-def create_machine(args):
+def create_machine(args: Dict[str, Any]) -> Machine:
     global log
     args["log"] = log
     args["redirectSerial"] = os.environ.get("USE_SERIAL", "0") == "1"
     return Machine(args)
 
 
-def start_all():
+def start_all() -> None:
+    global machines
     with log.nested("starting all VMs"):
         for machine in machines:
             machine.start()
 
 
-def join_all():
+def join_all() -> None:
+    global machines
     with log.nested("waiting for all VMs to finish"):
         for machine in machines:
             machine.wait_for_shutdown()
 
 
-def test_script():
+def test_script() -> None:
     exec(os.environ["testScript"])
 
 
-def run_tests():
+def run_tests() -> None:
+    global machines
     tests = os.environ.get("tests", None)
     if tests is not None:
         with log.nested("running the VM test script"):
@@ -757,7 +767,7 @@ def run_tests():
 
 
 @contextmanager
-def subtest(name):
+def subtest(name: str) -> Iterator[None]:
     global nr_tests
     global nr_succeeded
 
@@ -774,7 +784,6 @@ def subtest(name):
 
 
 if __name__ == "__main__":
-    global log
     log = Logger()
 
     vlan_nrs = list(dict.fromkeys(os.environ["VLANS"].split()))
@@ -793,7 +802,7 @@ if __name__ == "__main__":
     nr_succeeded = 0
 
     @atexit.register
-    def clean_up():
+    def clean_up() -> None:
         with log.nested("cleaning up"):
             for machine in machines:
                 if machine.pid is None:

nixos/lib/testing-python.nix

@@ -26,7 +26,7 @@ in rec {
 
     nativeBuildInputs = [ makeWrapper ];
     buildInputs = [ (python3.withPackages (p: [ p.ptpython ])) ];
-    checkInputs = with python3Packages; [ pylint black ];
+    checkInputs = with python3Packages; [ pylint black mypy ];
 
     dontUnpack = true;
 
@@ -34,6 +34,9 @@ in rec {
 
     doCheck = true;
     checkPhase = ''
+      mypy --disallow-untyped-defs \
+           --no-implicit-optional \
+           --ignore-missing-imports ${testDriverScript}
       pylint --errors-only ${testDriverScript}
       black --check --diff ${testDriverScript}
     '';

nixos/modules/module-list.nix

@@ -316,6 +316,7 @@
   ./services/development/bloop.nix
   ./services/development/hoogle.nix
   ./services/development/jupyter/default.nix
+  ./services/development/lorri.nix
   ./services/editors/emacs.nix
   ./services/editors/infinoted.nix
   ./services/games/factorio.nix
@@ -841,6 +842,7 @@
   ./services/web-servers/shellinabox.nix
   ./services/web-servers/tomcat.nix
   ./services/web-servers/traefik.nix
+  ./services/web-servers/ttyd.nix
   ./services/web-servers/uwsgi.nix
   ./services/web-servers/varnish/default.nix
   ./services/web-servers/zope2.nix

nixos/modules/security/acme.nix

@@ -224,6 +224,12 @@ in
                   environment.REQUESTS_CA_BUNDLE = "/etc/ssl/certs/ca-certificates.crt";
                   serviceConfig = {
                     Type = "oneshot";
+                    # With RemainAfterExit the service is considered active even
+                    # after the main process having exited, which means when it
+                    # gets changed, the activation phase restarts it, meaning
+                    # the permissions of the StateDirectory get adjusted
+                    # according to the specified group
+                    RemainAfterExit = true;
                     SuccessExitStatus = [ "0" "1" ];
                     User = data.user;
                     Group = data.group;

nixos/modules/services/audio/mpd.nix

@@ -18,7 +18,6 @@ let
     ''}
     state_file          "${cfg.dataDir}/state"
     sticker_file        "${cfg.dataDir}/sticker.sql"
-    log_file            "syslog"
     user                "${cfg.user}"
     group               "${cfg.group}"
 

nixos/modules/services/computing/slurm/slurm.nix

@@ -18,7 +18,7 @@ let
       ${optionalString (cfg.controlAddr != null) ''controlAddr=${cfg.controlAddr}''}
       ${toString (map (x: "NodeName=${x}\n") cfg.nodeName)}
       ${toString (map (x: "PartitionName=${x}\n") cfg.partitionName)}
-      PlugStackConfig=${plugStackConfig}
+      PlugStackConfig=${plugStackConfig}/plugstack.conf
       ProctrackType=${cfg.procTrackType}
       ${cfg.extraConfig}
     '';
@@ -39,6 +39,8 @@ let
      DbdHost=${cfg.dbdserver.dbdHost}
      SlurmUser=${cfg.user}
      StorageType=accounting_storage/mysql
+     StorageUser=${cfg.dbdserver.storageUser}
+     ${optionalString (cfg.dbdserver.storagePass != null) "StoragePass=${cfg.dbdserver.storagePass}"}
      ${cfg.dbdserver.extraConfig}
    '';
 
@@ -48,7 +50,6 @@ let
     name = "etc-slurm";
     paths = [ configFile cgroupConfig plugStackConfig ] ++ cfg.extraConfigPaths;
   };
-
 in
 
 {
@@ -86,6 +87,37 @@ in
           '';
         };
 
+        storageUser = mkOption {
+          type = types.str;
+          default = cfg.user;
+          description = ''
+            Database user name.
+          '';
+        };
+
+        storagePass = mkOption {
+          type = types.nullOr types.str;
+          default = null;
+          description = ''
+            Database password. Note that this password will be publicable
+            readable in the nix store. Use <option>configFile</option>
+            to store the and config file and password outside the nix store.
+          '';
+        };
+
+        configFile = mkOption {
+          type = types.nullOr types.str;
+          default = null;
+          description = ''
+            Path to <literal>slurmdbd.conf</literal>. The password for the database connection
+            is stored in the config file. Use this option to specfify a path
+            outside the nix store. If this option is unset a configuration file
+            will be generated. See also:
+            <citerefentry><refentrytitle>slurmdbd.conf</refentrytitle>
+            <manvolnum>8</manvolnum></citerefentry>.
+          '';
+        };
+
         extraConfig = mkOption {
           type = types.lines;
           default = "";
@@ -112,7 +144,7 @@ in
 
       package = mkOption {
         type = types.package;
-        default = pkgs.slurm;
+        default = pkgs.slurm.override { enableX11 = ! cfg.enableSrunX11; };
         defaultText = "pkgs.slurm";
         example = literalExample "pkgs.slurm-full";
         description = ''
@@ -178,9 +210,14 @@ in
           If enabled srun will accept the option "--x11" to allow for X11 forwarding
           from within an interactive session or a batch job. This activates the
           slurm-spank-x11 module. Note that this option also enables
-          'services.openssh.forwardX11' on the client.
+          <option>services.openssh.forwardX11</option> on the client.
 
           This option requires slurm to be compiled without native X11 support.
+          The default behavior is to re-compile the slurm package with native X11
+          support disabled if this option is set to true.
+
+          To use the native X11 support add <literal>PrologFlags=X11</literal> in <option>extraConfig</option>.
+          Note that this method will only work RSA SSH host keys.
         '';
       };
 
@@ -356,7 +393,11 @@ in
       requires = [ "munged.service" "mysql.service" ];
 
       # slurm strips the last component off the path
-      environment.SLURM_CONF = "${slurmdbdConf}/slurm.conf";
+      environment.SLURM_CONF =
+        if (cfg.dbdserver.configFile == null) then
+          "${slurmdbdConf}/slurm.conf"
+        else
+          cfg.dbdserver.configFile;
 
       serviceConfig = {
         Type = "forking";

nixos/modules/services/development/lorri.nix

@@ -0,0 +1,45 @@
+{ config, lib, pkgs, ... }:
+
+let
+  cfg = config.services.lorri;
+  socketPath = "lorri/daemon.socket";
+in {
+  options = {
+    services.lorri = {
+      enable = lib.mkOption {
+        default = false;
+        type = lib.types.bool;
+        description = ''
+          Enables the daemon for `lorri`, a nix-shell replacement for project
+          development. The socket-activated daemon starts on the first request
+          issued by the `lorri` command.
+        '';
+      };
+    };
+  };
+
+  config = lib.mkIf cfg.enable {
+    systemd.user.sockets.lorri = {
+      description = "Socket for Lorri Daemon";
+      wantedBy = [ "sockets.target" ];
+      socketConfig = {
+        ListenStream = "%t/${socketPath}";
+        RuntimeDirectory = "lorri";
+      };
+    };
+
+    systemd.user.services.lorri = {
+      description = "Lorri Daemon";
+      requires = [ "lorri.socket" ];
+      after = [ "lorri.socket" ];
+      path = with pkgs; [ config.nix.package gnutar gzip ];
+      serviceConfig = {
+        ExecStart = "${pkgs.lorri}/bin/lorri daemon";
+        PrivateTmp = true;
+        ProtectSystem = "strict";
+        ProtectHome = "read-only";
+        Restart = "on-failure";
+      };
+    };
+  };
+}

nixos/modules/services/mail/postfix.nix

@@ -631,6 +631,14 @@ in
         setgid = true;
       };
 
+      security.wrappers.mailq = {
+        program = "mailq";
+        source = "${pkgs.postfix}/bin/mailq";
+        group = setgidGroup;
+        setuid = false;
+        setgid = true;
+      };
+
       security.wrappers.postqueue = {
         program = "postqueue";
         source = "${pkgs.postfix}/bin/postqueue";

nixos/modules/services/monitoring/grafana.nix

@@ -43,7 +43,7 @@ let
 
     ANALYTICS_REPORTING_ENABLED = boolToString cfg.analytics.reporting.enable;
 
-    SMTP_ENABLE = boolToString cfg.smtp.enable;
+    SMTP_ENABLED = boolToString cfg.smtp.enable;
     SMTP_HOST = cfg.smtp.host;
     SMTP_USER = cfg.smtp.user;
     SMTP_PASSWORD = cfg.smtp.password;

nixos/modules/services/network-filesystems/samba.nix

@@ -40,7 +40,6 @@ let
   daemonService = appName: args:
     { description = "Samba Service Daemon ${appName}";
 
-      after = [ "network.target" ];
       requiredBy = [ "samba.target" ];
       partOf = [ "samba.target" ];
 

nixos/modules/services/networking/vsftpd.nix

@@ -34,6 +34,15 @@ let
   };
 
   optionDescription = [
+    (yesNoOption "allowWriteableChroot" "allow_writeable_chroot" false ''
+      Allow the use of writeable root inside chroot().
+    '')
+    (yesNoOption "virtualUseLocalPrivs" "virtual_use_local_privs" false ''
+      If enabled, virtual users will use the same privileges as local
+      users. By default, virtual users will use the same privileges as
+      anonymous users, which tends to be more restrictive (especially
+      in terms of write access).
+    '')
     (yesNoOption "anonymousUser" "anonymous_enable" false ''
       Whether to enable the anonymous FTP user.
     '')
@@ -76,9 +85,21 @@ let
       outgoing data connections can only connect to the client. Only enable if you
       know what you are doing!
     '')
-    (yesNoOption "ssl_tlsv1" "ssl_tlsv1" true  '' '')
-    (yesNoOption "ssl_sslv2" "ssl_sslv2" false '' '')
-    (yesNoOption "ssl_sslv3" "ssl_sslv3" false '' '')
+    (yesNoOption "ssl_tlsv1" "ssl_tlsv1" true  ''
+      Only applies if <option>ssl_enable</option> is activated. If
+      enabled, this option will permit TLS v1 protocol connections.
+      TLS v1 connections are preferred.
+    '')
+    (yesNoOption "ssl_sslv2" "ssl_sslv2" false ''
+      Only applies if <option>ssl_enable</option> is activated. If
+      enabled, this option will permit SSL v2 protocol connections.
+      TLS v1 connections are preferred.
+    '')
+    (yesNoOption "ssl_sslv3" "ssl_sslv3" false ''
+      Only applies if <option>ssl_enable</option> is activated. If
+      enabled, this option will permit SSL v3 protocol connections.
+      TLS v1 connections are preferred.
+    '')
   ];
 
   configFile = pkgs.writeText "vsftpd.conf"
@@ -98,6 +119,9 @@ let
       listen=YES
       nopriv_user=vsftpd
       secure_chroot_dir=/var/empty
+      ${optionalString (cfg.localRoot != null) ''
+        local_root=${cfg.localRoot}
+      ''}
       syslog_enable=YES
       ${optionalString (pkgs.stdenv.hostPlatform.system == "x86_64-linux") ''
         seccomp_sandbox=NO
@@ -106,6 +130,11 @@ let
       ${optionalString cfg.anonymousUser ''
         anon_root=${cfg.anonymousUserHome}
       ''}
+      ${optionalString cfg.enableVirtualUsers ''
+        guest_enable=YES
+        guest_username=vsftpd
+        pam_service_name=vsftpd
+      ''}
       ${cfg.extraConfig}
     '';
 
@@ -119,10 +148,7 @@ in
 
     services.vsftpd = {
 
-      enable = mkOption {
-        default = false;
-        description = "Whether to enable the vsftpd FTP server.";
-      };
+      enable = mkEnableOption "vsftpd";
 
       userlist = mkOption {
         default = [];
@@ -143,6 +169,61 @@ in
         '';
       };
 
+      enableVirtualUsers = mkOption {
+        type = types.bool;
+        default = false;
+        description = ''
+          Whether to enable the <literal>pam_userdb</literal>-based
+          virtual user system
+        '';
+      };
+
+      userDbPath = mkOption {
+        type = types.nullOr types.str;
+        example = "/etc/vsftpd/userDb";
+        default = null;
+        description = ''
+          Only applies if <option>enableVirtualUsers</option> is true.
+          Path pointing to the <literal>pam_userdb</literal> user
+          database used by vsftpd to authenticate the virtual users.
+
+          This user list should be stored in the Berkeley DB database
+          format.
+
+          To generate a new user database, create a text file, add
+          your users using the following format:
+          <programlisting>
+          user1
+          password1
+          user2
+          password2
+          </programlisting>
+
+          You can then install <literal>pkgs.db</literal> to generate
+          the Berkeley DB using
+          <programlisting>
+          db_load -T -t hash -f logins.txt userDb.db
+          </programlisting>
+
+          Caution: <literal>pam_userdb</literal> will automatically
+          append a <literal>.db</literal> suffix to the filename you
+          provide though this option. This option shouldn't include
+          this filetype suffix.
+        '';
+      };
+
+      localRoot = mkOption {
+        type = types.nullOr types.str;
+        default = null;
+        example = "/var/www/$USER";
+        description = ''
+          This option represents a directory which vsftpd will try to
+          change into after a local (i.e. non- anonymous) login.
+
+          Failure is silently ignored.
+        '';
+      };
+
       anonymousUserHome = mkOption {
         type = types.path;
         default = "/home/ftp/";
@@ -186,18 +267,25 @@ in
 
   config = mkIf cfg.enable {
 
-    assertions = singleton
+    assertions = [
       { assertion =
               (cfg.forceLocalLoginsSSL -> cfg.rsaCertFile != null)
           &&  (cfg.forceLocalDataSSL -> cfg.rsaCertFile != null);
         message = "vsftpd: If forceLocalLoginsSSL or forceLocalDataSSL is true then a rsaCertFile must be provided!";
-      };
+      }
+      {
+        assertion = (cfg.enableVirtualUsers -> cfg.userDbPath != null)
+                 && (cfg.enableVirtualUsers -> cfg.localUsers != null);
+        message = "vsftpd: If enableVirtualUsers is true, you need to setup both the userDbPath and localUsers options.";
+      }];
 
     users.users =
       [ { name = "vsftpd";
           uid = config.ids.uids.vsftpd;
           description = "VSFTPD user";
-          home = "/homeless-shelter";
+          home = if cfg.localRoot != null
+                   then cfg.localRoot # <= Necessary for virtual users.
+                   else "/homeless-shelter";
         }
       ] ++ optional cfg.anonymousUser
         { name = "ftp";
@@ -213,23 +301,24 @@ in
     # = false and whitelist root
     services.vsftpd.userlist = if cfg.userlistDeny then ["root"] else [];
 
-    systemd.services.vsftpd =
-      { description = "Vsftpd Server";
+    systemd = {
+      tmpfiles.rules = optional cfg.anonymousUser
+        #Type Path                       Mode User   Gr    Age Arg
+        "d    '${builtins.toString cfg.anonymousUserHome}' 0555 'ftp'  'ftp' -   -";
+      services.vsftpd = {
+        description = "Vsftpd Server";
 
         wantedBy = [ "multi-user.target" ];
 
-        preStart =
-          optionalString cfg.anonymousUser
-            ''
-              mkdir -p -m 555 ${cfg.anonymousUserHome}
-              chown -R ftp:ftp ${cfg.anonymousUserHome}
-            '';
-
         serviceConfig.ExecStart = "@${vsftpd}/sbin/vsftpd vsftpd ${configFile}";
         serviceConfig.Restart = "always";
         serviceConfig.Type = "forking";
       };
+    };
 
+    security.pam.services.vsftpd.text = mkIf (cfg.enableVirtualUsers && cfg.userDbPath != null)''
+      auth required pam_userdb.so db=${cfg.userDbPath}
+      account required pam_userdb.so db=${cfg.userDbPath}
+    '';
   };
-
 }

nixos/modules/services/networking/wireguard.nix

@@ -112,6 +112,32 @@ let
           Determines whether to add allowed IPs as routes or not.
         '';
       };
+
+      socketNamespace = mkOption {
+        default = null;
+        type = with types; nullOr str;
+        example = "container";
+        description = ''The pre-existing network namespace in which the
+        WireGuard interface is created, and which retains the socket even if the
+        interface is moved via <option>interfaceNamespace</option>. When
+        <literal>null</literal>, the interface is created in the init namespace.
+        See <link
+        xlink:href="https://www.wireguard.com/netns/">documentation</link>.
+        '';
+      };
+
+      interfaceNamespace = mkOption {
+        default = null;
+        type = with types; nullOr str;
+        example = "init";
+        description = ''The pre-existing network namespace the WireGuard
+        interface is moved to. The special value <literal>init</literal> means
+        the init namespace. When <literal>null</literal>, the interface is not
+        moved.
+        See <link
+        xlink:href="https://www.wireguard.com/netns/">documentation</link>.
+        '';
+      };
     };
 
   };
@@ -239,6 +265,10 @@ let
         if peer.presharedKey != null
           then pkgs.writeText "wg-psk" peer.presharedKey
           else peer.presharedKeyFile;
+      src = interfaceCfg.socketNamespace;
+      dst = interfaceCfg.interfaceNamespace;
+      ip = nsWrap "ip" src dst;
+      wg = nsWrap "wg" src dst;
     in nameValuePair "wireguard-${interfaceName}-peer-${unitName}"
       {
         description = "WireGuard Peer - ${interfaceName} - ${peer.publicKey}";
@@ -255,16 +285,16 @@ let
         };
 
         script = let
-          wg_setup = "wg set ${interfaceName} peer ${peer.publicKey}" +
+          wg_setup = "${wg} set ${interfaceName} peer ${peer.publicKey}" +
             optionalString (psk != null) " preshared-key ${psk}" +
             optionalString (peer.endpoint != null) " endpoint ${peer.endpoint}" +
             optionalString (peer.persistentKeepalive != null) " persistent-keepalive ${toString peer.persistentKeepalive}" +
             optionalString (peer.allowedIPs != []) " allowed-ips ${concatStringsSep "," peer.allowedIPs}";
           route_setup =
-            optionalString (interfaceCfg.allowedIPsAsRoutes != false)
+            optionalString interfaceCfg.allowedIPsAsRoutes
               (concatMapStringsSep "\n"
                 (allowedIP:
-                  "ip route replace ${allowedIP} dev ${interfaceName} table ${interfaceCfg.table}"
+                  "${ip} route replace ${allowedIP} dev ${interfaceName} table ${interfaceCfg.table}"
                 ) peer.allowedIPs);
         in ''
           ${wg_setup}
@@ -272,13 +302,13 @@ let
         '';
 
         postStop = let
-          route_destroy = optionalString (interfaceCfg.allowedIPsAsRoutes != false)
+          route_destroy = optionalString interfaceCfg.allowedIPsAsRoutes
             (concatMapStringsSep "\n"
               (allowedIP:
-                "ip route delete ${allowedIP} dev ${interfaceName} table ${interfaceCfg.table}"
+                "${ip} route delete ${allowedIP} dev ${interfaceName} table ${interfaceCfg.table}"
               ) peer.allowedIPs);
         in ''
-          wg set ${interfaceName} peer ${peer.publicKey} remove
+          ${wg} set ${interfaceName} peer ${peer.publicKey} remove
           ${route_destroy}
         '';
       };
@@ -287,6 +317,13 @@ let
     # exactly one way to specify the private key must be set
     #assert (values.privateKey != null) != (values.privateKeyFile != null);
     let privKey = if values.privateKeyFile != null then values.privateKeyFile else pkgs.writeText "wg-key" values.privateKey;
+        src = values.socketNamespace;
+        dst = values.interfaceNamespace;
+        ipPreMove  = nsWrap "ip" src null;
+        ipPostMove = nsWrap "ip" src dst;
+        wg = nsWrap "wg" src dst;
+        ns = if dst == "init" then "1" else dst;
+
     in
     nameValuePair "wireguard-${name}"
       {
@@ -307,26 +344,33 @@ let
 
           ${values.preSetup}
 
-          ip link add dev ${name} type wireguard
+          ${ipPreMove} link add dev ${name} type wireguard
+          ${optionalString (values.interfaceNamespace != null && values.interfaceNamespace != values.socketNamespace) "${ipPreMove} link set ${name} netns ${ns}"}
 
           ${concatMapStringsSep "\n" (ip:
-            "ip address add ${ip} dev ${name}"
+            "${ipPostMove} address add ${ip} dev ${name}"
           ) values.ips}
 
-          wg set ${name} private-key ${privKey} ${
+          ${wg} set ${name} private-key ${privKey} ${
             optionalString (values.listenPort != null) " listen-port ${toString values.listenPort}"}
 
-          ip link set up dev ${name}
+          ${ipPostMove} link set up dev ${name}
 
           ${values.postSetup}
         '';
 
         postStop = ''
-          ip link del dev ${name}
+          ${ipPostMove} link del dev ${name}
           ${values.postShutdown}
         '';
       };
 
+  nsWrap = cmd: src: dst:
+    let
+      nsList = filter (ns: ns != null) [ src dst ];
+      ns = last nsList;
+    in
+      if (length nsList > 0 && ns != "init") then "ip netns exec ${ns} ${cmd}" else cmd;
 in
 
 {

nixos/modules/services/web-servers/ttyd.nix

@@ -0,0 +1,196 @@
+{ config, lib, pkgs, ... }:
+
+with lib;
+
+let
+
+  cfg = config.services.ttyd;
+
+  # Command line arguments for the ttyd daemon
+  args = [ "--port" (toString cfg.port) ]
+         ++ optionals (cfg.socket != null) [ "--interface" cfg.socket ]
+         ++ optionals (cfg.interface != null) [ "--interface" cfg.interface ]
+         ++ [ "--signal" (toString cfg.signal) ]
+         ++ (concatLists (mapAttrsToList (_k: _v: [ "--client-option" "${_k}=${_v}" ]) cfg.clientOptions))
+         ++ [ "--terminal-type" cfg.terminalType ]
+         ++ optionals cfg.checkOrigin [ "--check-origin" ]
+         ++ [ "--max-clients" (toString cfg.maxClients) ]
+         ++ optionals (cfg.indexFile != null) [ "--index" cfg.indexFile ]
+         ++ optionals cfg.enableIPv6 [ "--ipv6" ]
+         ++ optionals cfg.enableSSL [ "--ssl-cert" cfg.certFile
+                                      "--ssl-key" cfg.keyFile
+                                      "--ssl-ca" cfg.caFile ]
+         ++ [ "--debug" (toString cfg.logLevel) ];
+
+in
+
+{
+
+  ###### interface
+
+  options = {
+    services.ttyd = {
+      enable = mkEnableOption "ttyd daemon";
+
+      port = mkOption {
+        type = types.int;
+        default = 7681;
+        description = "Port to listen on (use 0 for random port)";
+      };
+
+      socket = mkOption {
+        type = types.nullOr types.path;
+        default = null;
+        example = "/var/run/ttyd.sock";
+        description = "UNIX domain socket path to bind.";
+      };
+
+      interface = mkOption {
+        type = types.nullOr types.str;
+        default = null;
+        example = "eth0";
+        description = "Network interface to bind.";
+      };
+
+      username = mkOption {
+        type = types.nullOr types.str;
+        default = null;
+        description = "Username for basic authentication.";
+      };
+
+      passwordFile = mkOption {
+        type = types.nullOr types.path;
+        default = null;
+        apply = value: if value == null then null else toString value;
+        description = ''
+          File containing the password to use for basic authentication.
+          For insecurely putting the password in the globally readable store use
+          <literal>pkgs.writeText "ttydpw" "MyPassword"</literal>.
+        '';
+      };
+
+      signal = mkOption {
+        type = types.ints.u8;
+        default = 1;
+        description = "Signal to send to the command on session close.";
+      };
+
+      clientOptions = mkOption {
+        type = types.attrsOf types.str;
+        default = {};
+        example = literalExample ''{
+          fontSize = "16";
+          fontFamily = "Fira Code";
+
+        }'';
+        description = ''
+          Attribute set of client options for xtermjs.
+          <link xlink:href="https://xtermjs.org/docs/api/terminal/interfaces/iterminaloptions/"/>
+        '';
+      };
+
+      terminalType = mkOption {
+        type = types.str;
+        default = "xterm-256color";
+        description = "Terminal type to report.";
+      };
+
+      checkOrigin = mkOption {
+        type = types.bool;
+        default = false;
+        description = "Whether to allow a websocket connection from a different origin.";
+      };
+
+      maxClients = mkOption {
+        type = types.int;
+        default = 0;
+        description = "Maximum clients to support (0, no limit)";
+      };
+
+      indexFile = mkOption {
+        type = types.nullOr types.path;
+        default = null;
+        description = "Custom index.html path";
+      };
+
+      enableIPv6 = mkOption {
+        type = types.bool;
+        default = false;
+        description = "Whether or not to enable IPv6 support.";
+      };
+
+      enableSSL = mkOption {
+        type = types.bool;
+        default = false;
+        description = "Whether or not to enable SSL (https) support.";
+      };
+
+      certFile = mkOption {
+        type = types.nullOr types.path;
+        default = null;
+        description = "SSL certificate file path.";
+      };
+
+      keyFile = mkOption {
+        type = types.nullOr types.path;
+        default = null;
+        apply = value: if value == null then null else toString value;
+        description = ''
+          SSL key file path.
+          For insecurely putting the keyFile in the globally readable store use
+          <literal>pkgs.writeText "ttydKeyFile" "SSLKEY"</literal>.
+        '';
+      };
+
+      caFile = mkOption {
+        type = types.nullOr types.path;
+        default = null;
+        description = "SSL CA file path for client certificate verification.";
+      };
+
+      logLevel = mkOption {
+        type = types.int;
+        default = 7;
+        description = "Set log level.";
+      };
+    };
+  };
+
+  ###### implementation
+
+  config = mkIf cfg.enable {
+
+    assertions =
+      [ { assertion = cfg.enableSSL
+            -> cfg.certFile != null && cfg.keyFile != null && cfg.caFile != null;
+          message = "SSL is enabled for ttyd, but no certFile, keyFile or caFile has been specefied."; }
+        { assertion = ! (cfg.interface != null && cfg.socket != null);
+          message = "Cannot set both interface and socket for ttyd."; }
+        { assertion = (cfg.username != null) == (cfg.passwordFile != null);
+          message = "Need to set both username and passwordFile for ttyd"; }
+      ];
+
+    systemd.services.ttyd = {
+      description = "ttyd Web Server Daemon";
+
+      wantedBy = [ "multi-user.target" ];
+
+      serviceConfig = {
+        # Runs login which needs to be run as root
+        # login: Cannot possibly work without effective root
+        User = "root";
+      };
+
+      script = if cfg.passwordFile != null then ''
+        PASSWORD=$(cat ${escapeShellArg cfg.passwordFile})
+        ${pkgs.ttyd}/bin/ttyd ${lib.escapeShellArgs args} \
+          --credential ${escapeShellArg cfg.username}:"$PASSWORD" \
+          ${pkgs.shadow}/bin/login
+      ''
+      else ''
+        ${pkgs.ttyd}/bin/ttyd ${lib.escapeShellArgs args} \
+          ${pkgs.shadow}/bin/login
+      '';
+    };
+  };
+}

nixos/modules/services/web-servers/varnish/default.nix

@@ -15,8 +15,8 @@ in
 
       package = mkOption {
         type = types.package;
-        default = pkgs.varnish5;
-        defaultText = "pkgs.varnish5";
+        default = pkgs.varnish;
+        defaultText = "pkgs.varnish";
         description = ''
           The package to use
         '';
@@ -48,7 +48,7 @@ in
       extraModules = mkOption {
         type = types.listOf types.package;
         default = [];
-        example = literalExample "[ pkgs.varnish5Packages.geoip ]";
+        example = literalExample "[ pkgs.varnishPackages.geoip ]";
         description = "
           Varnish modules (except 'std').
         ";

nixos/modules/services/x11/desktop-managers/gnome3.nix

@@ -278,6 +278,26 @@ in
         source-sans-pro
       ];
 
+      ## Enable soft realtime scheduling, only supported on wayland ##
+
+      security.wrappers.".gnome-shell-wrapped" = {
+        source = "${pkgs.gnome3.gnome-shell}/bin/.gnome-shell-wrapped";
+        capabilities = "cap_sys_nice=ep";
+      };
+
+      systemd.user.services.gnome-shell-wayland = let
+        gnomeShellRT = with pkgs.gnome3; pkgs.runCommand "gnome-shell-rt" {} ''
+          mkdir -p $out/bin/
+          cp ${gnome-shell}/bin/gnome-shell $out/bin
+          sed -i "s@${gnome-shell}/bin/@${config.security.wrapperDir}/@" $out/bin/gnome-shell
+        '';
+      in {
+        # Note we need to clear ExecStart before overriding it
+        serviceConfig.ExecStart = ["" "${gnomeShellRT}/bin/gnome-shell"];
+        # Do not use the default environment, it provides a broken PATH
+        environment = mkForce {};
+      };
+
       # Adapt from https://gitlab.gnome.org/GNOME/gnome-build-meta/blob/gnome-3-32/elements/core/meta-gnome-core-shell.bst
       environment.systemPackages = with pkgs.gnome3; [
         adwaita-icon-theme

nixos/modules/virtualisation/libvirtd.nix

@@ -146,7 +146,8 @@ in {
       # this file is expected in /etc/qemu and not sysconfdir (/var/lib)
       etc."qemu/bridge.conf".text = lib.concatMapStringsSep "\n" (e:
         "allow ${e}") cfg.allowedBridges;
-      systemPackages = with pkgs; [ libvirt libressl.nc cfg.qemuPackage ];
+      systemPackages = with pkgs; [ libvirt libressl.nc iptables cfg.qemuPackage ];
+      etc.ethertypes.source = "${pkgs.iptables}/etc/ethertypes";
     };
 
     boot.kernelModules = [ "tun" ];

nixos/tests/all-tests.nix

@@ -147,6 +147,7 @@ in
   login = handleTest ./login.nix {};
   loki = handleTest ./loki.nix {};
   #logstash = handleTest ./logstash.nix {};
+  lorri = handleTest ./lorri/default.nix {};
   mailcatcher = handleTest ./mailcatcher.nix {};
   mathics = handleTest ./mathics.nix {};
   matomo = handleTest ./matomo.nix {};
@@ -280,6 +281,7 @@ in
   virtualbox = handleTestOn ["x86_64-linux"] ./virtualbox.nix {};
   wireguard = handleTest ./wireguard {};
   wireguard-generated = handleTest ./wireguard/generated.nix {};
+  wireguard-namespaces = handleTest ./wireguard/namespaces.nix {};
   wordpress = handleTest ./wordpress.nix {};
   xautolock = handleTest ./xautolock.nix {};
   xfce = handleTest ./xfce.nix {};

nixos/tests/jellyfin.nix

@@ -1,4 +1,4 @@
-import ./make-test.nix ({ lib, ...}:
+import ./make-test-python.nix ({ lib, ...}:
 
 {
   name = "jellyfin";
@@ -9,8 +9,8 @@ import ./make-test.nix ({ lib, ...}:
     { services.jellyfin.enable = true; };
 
   testScript = ''
-    $machine->waitForUnit('jellyfin.service');
-    $machine->waitForOpenPort('8096');
-    $machine->succeed("curl --fail http://localhost:8096/");
+    machine.wait_for_unit("jellyfin.service")
+    machine.wait_for_open_port(8096)
+    machine.succeed("curl --fail http://localhost:8096/")
   '';
 })

nixos/tests/lorri/builder.sh

@@ -0,0 +1,3 @@
+#!/bin/sh
+
+printf "%s" "${name:?}" > "${out:?}"

nixos/tests/lorri/default.nix

@@ -0,0 +1,26 @@
+import ../make-test-python.nix {
+  machine = { pkgs, ... }: {
+    imports = [ ../../modules/profiles/minimal.nix ];
+    environment.systemPackages = [ pkgs.lorri ];
+  };
+
+  testScript = ''
+    # Copy files over
+    machine.succeed(
+        "cp '${./fake-shell.nix}' shell.nix"
+    )
+    machine.succeed(
+        "cp '${./builder.sh}' builder.sh"
+    )
+
+    # Start the daemon and wait until it is ready
+    machine.execute("lorri daemon > lorri.stdout 2> lorri.stderr &")
+    machine.wait_until_succeeds("grep --fixed-strings 'lorri: ready' lorri.stdout")
+
+    # Ping the daemon
+    machine.execute("lorri ping_ $(readlink -f shell.nix)")
+
+    # Wait for the daemon to finish the build
+    machine.wait_until_succeeds("grep --fixed-strings 'OutputPaths' lorri.stdout")
+  '';
+}

nixos/tests/lorri/fake-shell.nix

@@ -0,0 +1,5 @@
+derivation {
+  system = builtins.currentSystem;
+  name = "fake-shell";
+  builder = ./builder.sh;
+}

nixos/tests/mpd.nix

@@ -1,4 +1,4 @@
-import ./make-test.nix ({ pkgs, ... }:
+import ./make-test.nix ({ pkgs, lib, ... }:
   let
     track = pkgs.fetchurl {
       # Sourced from http://freemusicarchive.org/music/Blue_Wave_Theory/Surf_Music_Month_Challenge/Skyhawk_Beach_fade_in
@@ -46,38 +46,51 @@ import ./make-test.nix ({ pkgs, ... }:
     };
 
   nodes =
-    { client = 
+    { client =
       { ... }: { };
 
       serverALSA =
-        { ... }: (mkServer {
-          mpd = defaultMpdCfg // {
-            network.listenAddress = "any";
-            extraConfig = ''
-              audio_output {
-                type "alsa"
-                name "ALSA"
-                mixer_type "null"
-              }
-            '';
-          };
-
-          musicService = with defaultMpdCfg; musicService { inherit user group musicDirectory; };
-        }) // { networking.firewall.allowedTCPPorts = [ 6600 ]; };
+        { ... }: lib.mkMerge [
+          (mkServer {
+            mpd = defaultMpdCfg // {
+              network.listenAddress = "any";
+              extraConfig = ''
+                audio_output {
+                  type "alsa"
+                  name "ALSA"
+                  mixer_type "null"
+                }
+              '';
+            };
+            musicService = with defaultMpdCfg; musicService { inherit user group musicDirectory; };
+          })
+          { networking.firewall.allowedTCPPorts = [ 6600 ]; }
+        ];
 
       serverPulseAudio =
-        { ... }: (mkServer {
-          mpd = defaultMpdCfg // {
-            extraConfig = ''
-              audio_output {
-                type "pulse"
-                name "The Pulse"
-              }
-            '';
-          };
+        { ... }: lib.mkMerge [
+          (mkServer {
+            mpd = defaultMpdCfg // {
+              extraConfig = ''
+                audio_output {
+                  type "pulse"
+                  name "The Pulse"
+                }
+              '';
+            };
 
-          musicService = with defaultCfg; musicService { inherit user group musicDirectory; };
-        }) // { hardware.pulseaudio.enable = true; };
+            musicService = with defaultCfg; musicService { inherit user group musicDirectory; };
+          })
+          {
+            hardware.pulseaudio = {
+              enable = true;
+              systemWide = true;
+              tcp.enable = true;
+              tcp.anonymousClients.allowAll = true;
+            };
+            systemd.services.mpd.environment.PULSE_SERVER = "localhost";
+          }
+        ];
     };
 
   testScript = ''
@@ -110,6 +123,7 @@ import ./make-test.nix ({ pkgs, ... }:
     play_some_music($serverALSA);
     play_some_music($serverPulseAudio);
 
+    $client->waitForUnit("multi-user.target");
     $client->succeed("$mpc -h serverALSA status");
 
     # The PulseAudio-based server is configured not to accept external client connections

nixos/tests/prometheus-exporters.nix

@@ -457,9 +457,7 @@ let
         wait_for_unit("prometheus-varnish-exporter.service")
         wait_for_open_port(6081)
         wait_for_open_port(9131)
-        succeed(
-            "curl -sSf http://localhost:9131/metrics | grep -q 'varnish_up 1'"
-        )
+        succeed("curl -sSf http://localhost:9131/metrics | grep -q 'varnish_up 1'")
       '';
     };
 

nixos/tests/sddm.nix

@@ -27,7 +27,7 @@ let
         user = nodes.machine.config.users.users.alice;
       in ''
         start_all()
-        machine.wait_for_text("select your user")
+        machine.wait_for_text("(?i)select your user")
         machine.screenshot("sddm")
         machine.send_chars("${user.password}\n")
         machine.wait_for_file("${user.home}/.Xauthority")

nixos/tests/slurm.nix

@@ -1,4 +1,4 @@
-import ./make-test.nix ({ lib, ... }:
+import ./make-test-python.nix ({ lib, ... }:
 let
     mungekey = "mungeverryweakkeybuteasytointegratoinatest";
 
@@ -54,10 +54,15 @@ in {
         networking.firewall.enable = false;
         services.slurm.dbdserver = {
           enable = true;
+          storagePass = "password123";
         };
         services.mysql = {
           enable = true;
-          package = pkgs.mysql;
+          package = pkgs.mariadb;
+          initialScript = pkgs.writeText "mysql-init.sql" ''
+            CREATE USER 'slurm'@'localhost' IDENTIFIED BY 'password123';
+            GRANT ALL PRIVILEGES ON slurm_acct_db.* TO 'slurm'@'localhost';
+          '';
           ensureDatabases = [ "slurm_acct_db" ];
           ensureUsers = [{
             ensurePermissions = { "slurm_acct_db.*" = "ALL PRIVILEGES"; };
@@ -80,63 +85,57 @@ in {
 
   testScript =
   ''
-  startAll;
+  start_all()
 
   # Set up authentification across the cluster
-  foreach my $node (($submit,$control,$dbd,$node1,$node2,$node3))
-  {
-    $node->waitForUnit("default.target");
+  for node in [submit, control, dbd, node1, node2, node3]:
 
-    $node->succeed("mkdir /etc/munge");
-    $node->succeed("echo '${mungekey}' > /etc/munge/munge.key");
-    $node->succeed("chmod 0400 /etc/munge/munge.key");
-    $node->succeed("chown munge:munge /etc/munge/munge.key");
-    $node->succeed("systemctl restart munged");
+      node.wait_for_unit("default.target")
+
+      node.succeed("mkdir /etc/munge")
+      node.succeed(
+          "echo '${mungekey}' > /etc/munge/munge.key"
+      )
+      node.succeed("chmod 0400 /etc/munge/munge.key")
+      node.succeed("chown munge:munge /etc/munge/munge.key")
+      node.succeed("systemctl restart munged")
+
+      node.wait_for_unit("munged")
 
-    $node->waitForUnit("munged");
-  };
 
   # Restart the services since they have probably failed due to the munge init
   # failure
-  subtest "can_start_slurmdbd", sub {
-    $dbd->succeed("systemctl restart slurmdbd");
-    $dbd->waitForUnit("slurmdbd.service");
-    $dbd->waitForOpenPort(6819);
-  };
+  with subtest("can_start_slurmdbd"):
+      dbd.succeed("systemctl restart slurmdbd")
+      dbd.wait_for_unit("slurmdbd.service")
+      dbd.wait_for_open_port(6819)
 
   # there needs to be an entry for the current
   # cluster in the database before slurmctld is restarted
-  subtest "add_account", sub {
-    $control->succeed("sacctmgr -i add cluster default");
-    # check for cluster entry
-    $control->succeed("sacctmgr list cluster | awk '{ print \$1 }' | grep default");
-  };
+  with subtest("add_account"):
+      control.succeed("sacctmgr -i add cluster default")
+      # check for cluster entry
+      control.succeed("sacctmgr list cluster | awk '{ print $1 }' | grep default")
 
-  subtest "can_start_slurmctld", sub {
-    $control->succeed("systemctl restart slurmctld");
-    $control->waitForUnit("slurmctld.service");
-  };
+  with subtest("can_start_slurmctld"):
+      control.succeed("systemctl restart slurmctld")
+      control.waitForUnit("slurmctld.service")
 
-  subtest "can_start_slurmd", sub {
-    foreach my $node (($node1,$node2,$node3))
-    {
-      $node->succeed("systemctl restart slurmd.service");
-      $node->waitForUnit("slurmd");
-    }
-  };
+  with subtest("can_start_slurmd"):
+      for node in [node1, node2, node3]:
+          node.succeed("systemctl restart slurmd.service")
+          node.wait_for_unit("slurmd")
 
   # Test that the cluster works and can distribute jobs;
 
-  subtest "run_distributed_command", sub {
-    # Run `hostname` on 3 nodes of the partition (so on all the 3 nodes).
-    # The output must contain the 3 different names
-    $submit->succeed("srun -N 3 hostname | sort | uniq | wc -l | xargs test 3 -eq");
-  };
+  with subtest("run_distributed_command"):
+      # Run `hostname` on 3 nodes of the partition (so on all the 3 nodes).
+      # The output must contain the 3 different names
+      submit.succeed("srun -N 3 hostname | sort | uniq | wc -l | xargs test 3 -eq")
 
-  subtest "check_slurm_dbd", sub {
-    # find the srun job from above in the database
-    sleep 5;
-    $control->succeed("sacct | grep hostname");
-  };
+      with subtest("check_slurm_dbd"):
+          # find the srun job from above in the database
+          control.succeed("sleep 5")
+          control.succeed("sacct | grep hostname")
   '';
 })

nixos/tests/wireguard/namespaces.nix

@@ -0,0 +1,80 @@
+let
+  listenPort = 12345;
+  socketNamespace = "foo";
+  interfaceNamespace = "bar";
+  node = {
+    networking.wireguard.interfaces.wg0 = {
+      listenPort = listenPort;
+      ips = [ "10.10.10.1/24" ];
+      privateKeyFile = "/etc/wireguard/private";
+      generatePrivateKeyFile = true;
+    };
+  };
+
+in
+
+import ../make-test.nix ({ pkgs, ...} : {
+  name = "wireguard-with-namespaces";
+  meta = with pkgs.stdenv.lib.maintainers; {
+    maintainers = [ asymmetric ];
+  };
+
+  nodes = {
+    # interface should be created in the socketNamespace
+    # and not moved from there
+    peer0 = pkgs.lib.attrsets.recursiveUpdate node {
+      networking.wireguard.interfaces.wg0 = {
+        preSetup = ''
+          ip netns add ${socketNamespace}
+        '';
+        inherit socketNamespace;
+      };
+    };
+    # interface should be created in the init namespace
+    # and moved to the interfaceNamespace
+    peer1 = pkgs.lib.attrsets.recursiveUpdate node {
+      networking.wireguard.interfaces.wg0 = {
+        preSetup = ''
+          ip netns add ${interfaceNamespace}
+        '';
+        inherit interfaceNamespace;
+      };
+    };
+    # interface should be created in the socketNamespace
+    # and moved to the interfaceNamespace
+    peer2 = pkgs.lib.attrsets.recursiveUpdate node {
+      networking.wireguard.interfaces.wg0 = {
+        preSetup = ''
+          ip netns add ${socketNamespace}
+          ip netns add ${interfaceNamespace}
+        '';
+        inherit socketNamespace interfaceNamespace;
+      };
+    };
+    # interface should be created in the socketNamespace
+    # and moved to the init namespace
+    peer3 = pkgs.lib.attrsets.recursiveUpdate node {
+      networking.wireguard.interfaces.wg0 = {
+        preSetup = ''
+          ip netns add ${socketNamespace}
+        '';
+        inherit socketNamespace;
+        interfaceNamespace = "init";
+      };
+    };
+  };
+
+  testScript = ''
+    startAll();
+
+    $peer0->waitForUnit("wireguard-wg0.service");
+    $peer1->waitForUnit("wireguard-wg0.service");
+    $peer2->waitForUnit("wireguard-wg0.service");
+    $peer3->waitForUnit("wireguard-wg0.service");
+
+    $peer0->succeed("ip -n ${socketNamespace} link show wg0");
+    $peer1->succeed("ip -n ${interfaceNamespace} link show wg0");
+    $peer2->succeed("ip -n ${interfaceNamespace} link show wg0");
+    $peer3->succeed("ip link show wg0");
+  '';
+})

pkgs/applications/audio/amarok/default.nix

@@ -33,6 +33,8 @@ mkDerivation rec {
   enableParallelBuilding = true;
 
   meta = with lib; {
+    homepage = "https://amarok.kde.org";
+    description = "A powerful music player with an intuitive interface";
     license = licenses.gpl2;
     maintainers = with maintainers; [ peterhoeg ];
   };

pkgs/applications/audio/audacity/default.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, wxGTK30, pkgconfig, file, gettext, gtk2,
+{ stdenv, fetchzip, wxGTK30, pkgconfig, file, gettext,
   libvorbis, libmad, libjack2, lv2, lilv, serd, sord, sratom, suil, alsaLib, libsndfile, soxr, flac, lame,
   expat, libid3tag, ffmpeg, soundtouch, /*, portaudio - given up fighting their portaudio.patch */
   autoconf, automake, libtool
@@ -10,9 +10,9 @@ stdenv.mkDerivation rec {
   version = "2.3.2";
   pname = "audacity";
 
-  src = fetchurl {
+  src = fetchzip {
     url = "https://github.com/audacity/audacity/archive/Audacity-${version}.tar.gz";
-    sha256 = "0cf7fr1qhyyylj8g9ax1rq5sb887bcv5b8d7hwlcfwamzxqpliyc";
+    sha256 = "08w96124vv8k4myd4vifq73ningq6404x889wvg2sk016kc4dfv1";
   };
 
   preConfigure = /* we prefer system-wide libs */ ''
@@ -43,12 +43,11 @@ stdenv.mkDerivation rec {
     "-lswscale"
   ];
 
-  nativeBuildInputs = [ pkgconfig ];
+  nativeBuildInputs = [ pkgconfig autoconf automake libtool ];
   buildInputs = [
     file gettext wxGTK30 expat alsaLib
-    libsndfile soxr libid3tag libjack2 lv2 lilv serd sord sratom suil gtk2
+    libsndfile soxr libid3tag libjack2 lv2 lilv serd sord sratom suil wxGTK30.gtk
     ffmpeg libmad lame libvorbis flac soundtouch
-    autoconf automake libtool # for the preConfigure phase
   ]; #ToDo: detach sbsms
 
   enableParallelBuilding = true;
@@ -60,7 +59,7 @@ stdenv.mkDerivation rec {
     description = "Sound editor with graphical UI";
     homepage = http://audacityteam.org/;
     license = licenses.gpl2Plus;
-    platforms = with platforms; linux;
+    platforms = intersectLists platforms.linux platforms.x86; # fails on ARM
     maintainers = with maintainers; [ the-kenny ];
   };
 }

pkgs/applications/audio/bitwig-studio/bitwig-studio3.nix

@@ -3,11 +3,11 @@
 
 bitwig-studio1.overrideAttrs (oldAttrs: rec {
   name = "bitwig-studio-${version}";
-  version = "3.0.1";
+  version = "3.0.3";
 
   src = fetchurl {
     url = "https://downloads.bitwig.com/stable/${version}/bitwig-studio-${version}.deb";
-    sha256 = "0k25p1j4kgnhm7p90qp1cz79xddgi6nh1nx1y5wz42x8qrpxya0s";
+    sha256 = "162l95imq2fb4blfkianlkymm690by9ri73xf9zigknqf0gacgsa";
   };
 
   runtimeDependencies = [

pkgs/applications/audio/mpc/default.nix

@@ -1,21 +1,19 @@
-{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, mpd_clientlib }:
+{ stdenv, fetchFromGitHub, meson, ninja, pkgconfig, mpd_clientlib, sphinx }:
 
 stdenv.mkDerivation rec {
   pname = "mpc";
-  version = "0.28";
+  version = "0.31";
 
   src = fetchFromGitHub {
     owner  = "MusicPlayerDaemon";
     repo   = "mpc";
     rev    = "v${version}";
-    sha256 = "1g8i4q5xsqdhidyjpvj6hzbhxacv27cb47ndv9k68whd80c5f9n9";
+    sha256 = "06wn5f24bgkqmhh2p8rbizmqibzqr4x1q7c6zl0pfq7mdy49g5ds";
   };
 
   buildInputs = [ mpd_clientlib ];
 
-  nativeBuildInputs = [ autoreconfHook pkgconfig ];
-
-  enableParallelBuilding = true;
+  nativeBuildInputs = [ meson ninja pkgconfig sphinx ];
 
   meta = with stdenv.lib; {
     description = "A minimalist command line interface to MPD";

pkgs/applications/audio/pithos/default.nix

@@ -4,13 +4,13 @@
 
 pythonPackages.buildPythonApplication rec {
   pname = "pithos";
-  version = "1.4.1";
+  version = "1.5.0";
 
   src = fetchFromGitHub {
     owner = pname;
     repo  = pname;
     rev = version;
-    sha256 = "0vaw0rfcdh4bsp9b8la9bs36kw0iwia54y5x060byxhff9av6nj4";
+    sha256 = "10nnm55ql86x1qfmq6dx9a1igf7myjxibmvyhd7fyv06vdhfifgy";
   };
 
   format = "other";

pkgs/applications/audio/qjackctl/default.nix

@@ -1,14 +1,14 @@
 { stdenv, mkDerivation, fetchurl, pkgconfig, alsaLib, libjack2, dbus, qtbase, qttools, qtx11extras }:
 
 mkDerivation rec {
-  version = "0.5.9";
+  version = "0.6.0";
   pname = "qjackctl";
 
   # some dependencies such as killall have to be installed additionally
 
   src = fetchurl {
     url = "mirror://sourceforge/qjackctl/${pname}-${version}.tar.gz";
-    sha256 = "1saywsda9m124rmjp7i3n0llryaliabjxhqhvqr6dm983qy7pypk";
+    sha256 = "1kddvxxhwvw1ps1c1drr08hxqci7jw4jwr8h1d9isb8agydfxmcx";
   };
 
   buildInputs = [

pkgs/applications/audio/snd/default.nix

@@ -4,11 +4,11 @@
 }:
 
 stdenv.mkDerivation rec {
-  name = "snd-19.7";
+  name = "snd-19.8";
 
   src = fetchurl {
     url = "mirror://sourceforge/snd/${name}.tar.gz";
-    sha256 = "1pr3l9iadvwinmxfl9a2lsm67yi7w3rhxglidpd41m2ni8jf2rlm";
+    sha256 = "0cdf3940cjvf5kls5l1zjll9wgg152xzlxs0jmpsq1kml12qa67b";
   };
 
   nativeBuildInputs = [ pkgconfig ];

pkgs/applications/blockchains/wownero.nix

@@ -1,27 +1,25 @@
-{ stdenv, fetchFromGitHub, cmake, pkgconfig, git
-, boost, miniupnpc_2, openssl, unbound, cppzmq
-, zeromq, pcsclite, readline, libsodium, rapidjson
+{ stdenv, fetchFromGitHub, cmake, boost, miniupnpc_2, openssl, unbound
+, readline, libsodium, rapidjson
 }:
 
 with stdenv.lib;
 
 stdenv.mkDerivation rec {
   pname = "wownero";
+  version = "0.7.0";
 
-  version = "0.6.1.2";
   src = fetchFromGitHub {
     owner = "wownero";
     repo = "wownero";
     rev    = "v${version}";
-    sha256 = "03q3pviyhrldpa3f4ly4d97jr39hvrz37chl102bap0790d9lk09";
+    sha256 = "0lji24s6346qxcj4pmylv8byb8fnqzpmz81rx4i3zhc1bcsvdwas";
     fetchSubmodules = true;
   };
 
-  nativeBuildInputs = [ cmake pkgconfig git ];
+  nativeBuildInputs = [ cmake ];
 
   buildInputs = [
-    boost miniupnpc_2 openssl unbound rapidjson
-    cppzmq zeromq pcsclite readline libsodium
+    boost miniupnpc_2 openssl unbound rapidjson readline libsodium
   ];
 
   cmakeFlags = [
@@ -30,13 +28,16 @@ stdenv.mkDerivation rec {
   ];
 
   meta = {
-    description = "Wownero is a fork of the cryptocurrency Monero with primary alterations";
+    description = ''
+      A privacy-centric memecoin that was fairly launched on April 1, 2018 with
+      no pre-mine, stealth-mine or ICO
+    '';
     longDescription = ''
-      Wownero’s emission is capped and supply is finite. Wownero is a fairly
-      launched coin with no premine. It’s not a fork of another blockchain. With
-      its own genesis block there is no degradation of privacy caused by ring
-      signatures using different participants for the same transaction outputs.
-      Unlike opposing forks.
+      Wownero has a maximum supply of around 184 million WOW with a slow and
+      steady emission over 50 years. It is a fork of Monero, but with its own
+      genesis block, so there is no degradation of privacy due to ring
+      signatures using different participants for the same tx outputs on
+      opposing forks.
     '';
     homepage    = http://wownero.org/;
     license     = licenses.bsd3;

pkgs/applications/editors/jetbrains/default.nix

@@ -250,12 +250,12 @@ in
 
   clion = buildClion rec {
     name = "clion-${version}";
-    version = "2019.2.3"; /* updated by script */
+    version = "2019.2.5"; /* updated by script */
     description  = "C/C++ IDE. New. Intelligent. Cross-platform";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/cpp/CLion-${version}.tar.gz";
-      sha256 = "0kiqbcx64rlz1pajbn326zwy0d1vxdxpvk5xpqkcj7nva611pdq1"; /* updated by script */
+      sha256 = "0p0shikhf73ayflv5bm212kz06hiy3brww9h9ijjp6lcadxc9pmf"; /* updated by script */
     };
     wmClass = "jetbrains-clion";
     update-channel = "CLion RELEASE"; # channel's id as in http://www.jetbrains.com/updates/updates.xml
@@ -263,12 +263,12 @@ in
 
   datagrip = buildDataGrip rec {
     name = "datagrip-${version}";
-    version = "2019.2.5"; /* updated by script */
+    version = "2019.2.6"; /* updated by script */
     description = "Your Swiss Army Knife for Databases and SQL";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/datagrip/${name}.tar.gz";
-      sha256 = "18frmlchalpvc55j25ig2slf2h33gwmbmm8dvc29jb3kgsl0ny7p"; /* updated by script */
+      sha256 = "0g57njcklyskadxmvwb0r0z3ckq9qmcwh8qd80w396gj8fgbg50g"; /* updated by script */
     };
     wmClass = "jetbrains-datagrip";
     update-channel = "DataGrip RELEASE";
@@ -276,12 +276,12 @@ in
 
   goland = buildGoland rec {
     name = "goland-${version}";
-    version = "2019.2.2"; /* updated by script */
+    version = "2019.2.4"; /* updated by script */
     description = "Up and Coming Go IDE";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/go/${name}.tar.gz";
-      sha256 = "1wq1prgfn6wc7lc6qjhiykm62c56yrb5rv0hyylcsgdw0q3ns6z2"; /* updated by script */
+      sha256 = "0rkyw3532qvr6jhr09m3h0ssdy5ilfgfvqqliyf0cacwzw9lfv0p"; /* updated by script */
     };
     wmClass = "jetbrains-goland";
     update-channel = "GoLand RELEASE";
@@ -289,12 +289,12 @@ in
 
   idea-community = buildIdea rec {
     name = "idea-community-${version}";
-    version = "2019.2.3"; /* updated by script */
+    version = "2019.2.4"; /* updated by script */
     description = "Integrated Development Environment (IDE) by Jetbrains, community edition";
     license = stdenv.lib.licenses.asl20;
     src = fetchurl {
       url = "https://download.jetbrains.com/idea/ideaIC-${version}.tar.gz";
-      sha256 = "0gy42x49yhdnp4ks6445xbc24dxw2vxnl12hdyx03mszdv0r58ni"; /* updated by script */
+      sha256 = "012vmclx6kg85gffgc9mr3fp1ffgx20dz7xvafk7c1iynawx8wgq"; /* updated by script */
     };
     wmClass = "jetbrains-idea-ce";
     update-channel = "IntelliJ IDEA RELEASE";
@@ -302,12 +302,12 @@ in
 
   idea-ultimate = buildIdea rec {
     name = "idea-ultimate-${version}";
-    version = "2019.2.3"; /* updated by script */
+    version = "2019.2.4"; /* updated by script */
     description = "Integrated Development Environment (IDE) by Jetbrains, requires paid license";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/idea/ideaIU-${version}-no-jbr.tar.gz";
-      sha256 = "0allnibq8van3n1c5y85gscbpls0wshwffa6b2l2andw1jkhc259"; /* updated by script */
+      sha256 = "09mz4dx3zbnqw0vh4iqr8sn2s8mvgr7zvn4k7kqivsiv8f79g90a"; /* updated by script */
     };
     wmClass = "jetbrains-idea";
     update-channel = "IntelliJ IDEA RELEASE";
@@ -315,12 +315,12 @@ in
 
   phpstorm = buildPhpStorm rec {
     name = "phpstorm-${version}";
-    version = "2019.2.3"; /* updated by script */
+    version = "2019.2.4"; /* updated by script */
     description = "Professional IDE for Web and PHP developers";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/webide/PhpStorm-${version}.tar.gz";
-      sha256 = "0pra0hmyczxcxnvsc7rqiwhwj23ckx97c9m1wcyn7ik612xwik1i"; /* updated by script */
+      sha256 = "1bx8s4hh96pjfyccldwfarwv5fky6kg2kyc0h2arhfzwq1pbaisl"; /* updated by script */
     };
     wmClass = "jetbrains-phpstorm";
     update-channel = "PhpStorm RELEASE";
@@ -328,12 +328,12 @@ in
 
   pycharm-community = buildPycharm rec {
     name = "pycharm-community-${version}";
-    version = "2019.2.3"; /* updated by script */
+    version = "2019.2.4"; /* updated by script */
     description = "PyCharm Community Edition";
     license = stdenv.lib.licenses.asl20;
     src = fetchurl {
       url = "https://download.jetbrains.com/python/${name}.tar.gz";
-      sha256 = "02fynwi54libibgigwggh6xaf5p4046n0kjsqsck1kjbnrlghp10"; /* updated by script */
+      sha256 = "00dl3yx13lw8qyc23dirw96vm2d8c6zsx73ds1ha8zycfh6hkxf8"; /* updated by script */
     };
     wmClass = "jetbrains-pycharm-ce";
     update-channel = "PyCharm RELEASE";
@@ -341,12 +341,12 @@ in
 
   pycharm-professional = buildPycharm rec {
     name = "pycharm-professional-${version}";
-    version = "2019.2.3"; /* updated by script */
+    version = "2019.2.4"; /* updated by script */
     description = "PyCharm Professional Edition";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/python/${name}.tar.gz";
-      sha256 = "19i3ll8p69n7jw7psv2nkhjq899gljwmc5ixpqhyl203rykavb7n"; /* updated by script */
+      sha256 = "14ab1cvypanwwn0k1hrx3rl964av6pvridgc19z49idw5wpgxgw7"; /* updated by script */
     };
     wmClass = "jetbrains-pycharm";
     update-channel = "PyCharm RELEASE";
@@ -354,12 +354,12 @@ in
 
   rider = buildRider rec {
     name = "rider-${version}";
-    version = "2019.2.2"; /* updated by script */
+    version = "2019.2.3"; /* updated by script */
     description = "A cross-platform .NET IDE based on the IntelliJ platform and ReSharper";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/rider/JetBrains.Rider-${version}.tar.gz";
-      sha256 = "1wv5vhiv3w1dwyklx1pr5javp4psqyiv4naq37cvxxp9zh7hk8rc"; /* updated by script */
+      sha256 = "13br6zmqpvi9hcd6wdnalkhj50gzr7cwrdh4v2bpda77iby2pz93"; /* updated by script */
     };
     wmClass = "jetbrains-rider";
     update-channel = "Rider RELEASE";
@@ -367,12 +367,12 @@ in
 
   ruby-mine = buildRubyMine rec {
     name = "ruby-mine-${version}";
-    version = "2019.2.3"; /* updated by script */
+    version = "2019.2.4"; /* updated by script */
     description = "The Most Intelligent Ruby and Rails IDE";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/ruby/RubyMine-${version}.tar.gz";
-      sha256 = "0g8yxsq9xn8l8wnmcm0y5y0ll5081s83mmwrb62k4bldlsr25iba"; /* updated by script */
+      sha256 = "1dqp222zvi8ikqdkprmqihyjxiq90vd0a0zl5935xjg1mzf8ald9"; /* updated by script */
     };
     wmClass = "jetbrains-rubymine";
     update-channel = "RubyMine RELEASE";
@@ -380,12 +380,12 @@ in
 
   webstorm = buildWebStorm rec {
     name = "webstorm-${version}";
-    version = "2019.2.3"; /* updated by script */
+    version = "2019.2.4"; /* updated by script */
     description = "Professional IDE for Web and JavaScript development";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/webstorm/WebStorm-${version}.tar.gz";
-      sha256 = "0l3c3b1d53b3w90d4g99pjw8vmjj716jjaxsv4hy53shh1ncd55g"; /* updated by script */
+      sha256 = "0iz9qgrbhn1rxr8n5q1y7klfs27j1f55pw8hqbl2ln4df94zqi5j"; /* updated by script */
     };
     wmClass = "jetbrains-webstorm";
     update-channel = "WebStorm RELEASE";

pkgs/applications/editors/texstudio/default.nix

@@ -1,6 +1,7 @@
-{ stdenv, fetchFromGitHub, qt5, poppler, zlib, pkgconfig}:
+{ lib, mkDerivation, fetchFromGitHub, qmake, qtbase, qtscript, qtsvg,
+  poppler, zlib, pkgconfig }:
 
-stdenv.mkDerivation rec {
+mkDerivation rec {
   pname = "texstudio";
   version = "2.12.16";
 
@@ -11,12 +12,12 @@ stdenv.mkDerivation rec {
     sha256 = "0ck65fvz6mzfpqdb1ndgyvgxdnslrwhdr1swgck4gaghcrgbg3gq";
   };
 
-  nativeBuildInputs = [ qt5.qmake pkgconfig ];
-  buildInputs = [ qt5.qtbase qt5.qtscript qt5.qtsvg poppler zlib ];
+  nativeBuildInputs = [ qmake pkgconfig ];
+  buildInputs = [ qtbase qtscript qtsvg poppler zlib ];
 
   qmakeFlags = [ "NO_APPDATA=True" ];
 
-  meta = with stdenv.lib; {
+  meta = with lib; {
     description = "TeX and LaTeX editor";
     longDescription=''
 	Fork of TeXMaker, this editor is a full fledged IDE for

pkgs/applications/graphics/displaycal/default.nix

@@ -1,8 +1,19 @@
-{buildPythonPackage, stdenv, fetchurl, pkgconfig
- , libXext, libXxf86vm, libX11, libXrandr, libXinerama, libXScrnSaver
- , argyllcms, wxPython, numpy
+{ python2
+, stdenv
+, fetchurl
+, pkgconfig
+, libXext
+, libXxf86vm
+, libX11
+, libXrandr
+, libXinerama
+, libXScrnSaver
+, argyllcms
  }:
-buildPythonPackage {
+
+let
+  inherit (python2.pkgs) buildPythonApplication wxPython numpy;
+in buildPythonApplication {
   pname = "displaycal";
   version = "3.5.0.0";
 

pkgs/applications/graphics/dosage/default.nix

@@ -1,6 +1,6 @@
-{ stdenv, pythonPackages, fetchFromGitHub }:
+{ stdenv, python3Packages, fetchFromGitHub }:
 
-pythonPackages.buildPythonApplication rec {
+python3Packages.buildPythonApplication rec {
   pname = "dosage";
   version = "2018.04.08";
   PBR_VERSION = version;
@@ -11,10 +11,10 @@ pythonPackages.buildPythonApplication rec {
     rev = "b2fdc13feb65b93762928f7e99bac7b1b7b31591";
     sha256 = "1p6vllqaf9s6crj47xqp97hkglch1kd4y8y4lxvzx3g2shhhk9hh";
   };
-  checkInputs = with pythonPackages; [ pytest responses ];
-  propagatedBuildInputs = with pythonPackages; [ colorama lxml requests pbr ];
+  checkInputs = with python3Packages; [ pytest responses ];
+  propagatedBuildInputs = with python3Packages; [ colorama lxml requests pbr setuptools ];
 
-  disabled = pythonPackages.pythonOlder "3.3";
+  disabled = python3Packages.pythonOlder "3.3";
 
   checkPhase = ''
     py.test tests/

pkgs/applications/graphics/feh/default.nix

@@ -1,6 +1,6 @@
 { stdenv, fetchurl, makeWrapper
 , xorg, imlib2, libjpeg, libpng
-, curl, libexif, perlPackages }:
+, curl, libexif, jpegexiforient, perlPackages }:
 
 with stdenv.lib;
 
@@ -25,7 +25,7 @@ stdenv.mkDerivation rec {
 
   installTargets = [ "install" ];
   postInstall = ''
-    wrapProgram "$out/bin/feh" --prefix PATH : "${libjpeg.bin}/bin" \
+    wrapProgram "$out/bin/feh" --prefix PATH : "${makeBinPath [ libjpeg jpegexiforient ]}" \
                                --add-flags '--theme=feh'
   '';
 

pkgs/applications/graphics/renderdoc/default.nix

@@ -1,32 +1,34 @@
-{ stdenv, fetchFromGitHub, cmake, pkgconfig
+{ stdenv, fetchFromGitHub, cmake, pkgconfig, mkDerivation
 , qtbase, qtx11extras, qtsvg, makeWrapper
-, vulkan-loader, xorg
-, python3, bison, pcre, automake, autoconf
+, vulkan-loader, xorg, python3, python3Packages
+, bison, pcre, automake, autoconf, addOpenGLRunpath
 }:
 let
   custom_swig = fetchFromGitHub {
     owner = "baldurk";
     repo = "swig";
-    rev = "renderdoc-modified-6";
-    sha256 = "00ykqlzx1k9iwqjlc54kfch7cnzsj53hxn7ql70dj3rxqzrnadc0";
+    rev = "renderdoc-modified-7";
+    sha256 = "15r2m5kcs0id64pa2fsw58qll3jyh71jzc04wy20pgsh2326zis6";
   };
+  pythonPackages = python3Packages;
 in
-stdenv.mkDerivation rec {
-  version = "1.4";
+mkDerivation rec {
+  version = "1.5";
   pname = "renderdoc";
 
   src = fetchFromGitHub {
     owner = "baldurk";
     repo = "renderdoc";
     rev = "v${version}";
-    sha256 = "1iann73r4yzkwnm13h4zqipqrp5i5cnkv27yyap0axz6h3npw94r";
+    sha256 = "0a05f6qfq90wrf4fixchp9knx4nhqhwjxl02n03a7k56xzxxnlci";
   };
 
   buildInputs = [
     qtbase qtsvg xorg.libpthreadstubs xorg.libXdmcp qtx11extras vulkan-loader python3
-  ];
+  ]; # ++ (with pythonPackages; [pyside2 pyside2-tools shiboken2]);
+  # TODO: figure out how to make cmake recognise pyside2
 
-  nativeBuildInputs = [ cmake makeWrapper pkgconfig bison pcre automake autoconf ];
+  nativeBuildInputs = [ cmake makeWrapper pkgconfig bison pcre automake autoconf addOpenGLRunpath ];
 
   postUnpack = ''
     cp -r ${custom_swig} swig
@@ -40,19 +42,23 @@ stdenv.mkDerivation rec {
     "-DBUILD_VERSION_DIST_VER=${version}"
     "-DBUILD_VERSION_DIST_CONTACT=https://github.com/NixOS/nixpkgs/tree/master/pkgs/applications/graphics/renderdoc"
     "-DBUILD_VERSION_STABLE=ON"
-    # TODO: add once pyside2 is in nixpkgs
-    #"-DPYSIDE2_PACKAGE_DIR=${python36Packages.pyside2}"
   ];
 
-  # Future work: define these in the above array via placeholders
+  # TODO: define these in the above array via placeholders, once those are widely supported
   preConfigure = ''
     cmakeFlags+=" -DVULKAN_LAYER_FOLDER=$out/share/vulkan/implicit_layer.d/"
     cmakeFlags+=" -DRENDERDOC_SWIG_PACKAGE=$PWD/../swig"
   '';
 
+  dontWrapQtApps = true;
   preFixup = ''
-    wrapProgram $out/bin/qrenderdoc --suffix LD_LIBRARY_PATH : $out/lib --suffix LD_LIBRARY_PATH : ${vulkan-loader}/lib
-    wrapProgram $out/bin/renderdoccmd --suffix LD_LIBRARY_PATH : $out/lib --suffix LD_LIBRARY_PATH : ${vulkan-loader}/lib
+    wrapQtApp $out/bin/qrenderdoc --suffix LD_LIBRARY_PATH : "$out/lib:${vulkan-loader}/lib"
+    wrapProgram $out/bin/renderdoccmd --suffix LD_LIBRARY_PATH : "$out/lib:${vulkan-loader}/lib"
+  '';
+
+  # The only documentation for this so far is in pkgs/build-support/add-opengl-runpath/setup-hook.sh
+  postFixup = ''
+    addOpenGLRunpath $out/lib/librenderdoc.so
   '';
 
   enableParallelBuilding = true;

pkgs/applications/kde/print-manager.nix

@@ -20,4 +20,10 @@ mkDerivation {
     kwidgetsaddons kitemviews kio kwindowsystem plasma-framework qtdeclarative
   ];
   outputs = [ "out" "dev" ];
+  # Fix build with cups deprecations etc.
+  # See: https://github.com/NixOS/nixpkgs/issues/73334
+  NIX_CFLAGS_COMPILE = [
+    "-Wno-error=deprecated-declarations"
+    "-Wno-error=format-security"
+  ];
 }

pkgs/applications/misc/hubstaff/revision.json

@@ -1,5 +1,5 @@
 {
-  "url": "https://hubstaff-production.s3.amazonaws.com/downloads/HubstaffClient/Builds/Release/1.5.0-4309ed45/Hubstaff-1.5.0-4309ed45.sh",
-  "version": "1.5.0-4309ed45",
-  "sha256": "1rfxizb28b8r344d18jh6shfcxz35vx8vh10c3j6zdcc998zkcr1"
+  "url": "https://hubstaff-production.s3.amazonaws.com/downloads/HubstaffClient/Builds/Release/1.5.2-bead991b/Hubstaff-1.5.2-bead991b.sh",
+  "version": "1.5.2-bead991b",
+  "sha256": "068b0q94ydldyjmzbka1j94vr1xdxvkxq79pp7ria81hvpp68yxf"
 }

pkgs/applications/misc/khard/default.nix

@@ -1,36 +1,15 @@
-{ stdenv, fetchurl, glibcLocales, python3 }:
+{ stdenv, glibcLocales, python3 }:
 
-let
-  python = python3.override {
-    packageOverrides = self: super: {
-
-      # https://github.com/pimutils/khal/issues/780
-      python-dateutil = super.python-dateutil.overridePythonAttrs (oldAttrs: rec {
-        version = "2.6.1";
-        src = oldAttrs.src.override {
-          inherit version;
-          sha256 = "891c38b2a02f5bb1be3e4793866c8df49c7d19baabf9c1bad62547e0b4866aca";
-        };
-      });
-
-    };
-  };
-
-in with python.pkgs; buildPythonApplication rec {
-  version = "0.14.0";
+python3.pkgs.buildPythonApplication rec {
+  version = "0.15.1";
   pname = "khard";
-  namePrefix = "";
 
-  src = fetchurl {
-    url = "https://github.com/scheibler/khard/archive/v${version}.tar.gz";
-    sha256 = "0m1pc67jz663yfc0xzfpknymn8jj2bpfxaph3pl0mjd3h1zjfyaq";
+  src = python3.pkgs.fetchPypi {
+    inherit pname version;
+    sha256 = "18ba2xgfq8sw0bg6xmlfjpizid1hkzgswcfcc54gl21y2dwfda2w";
   };
 
-  # setup.py reads the UTF-8 encoded readme.
-  LC_ALL = "en_US.UTF-8";
-  buildInputs = [ glibcLocales ];
-
-  propagatedBuildInputs = [
+  propagatedBuildInputs = with python3.pkgs; [
     atomicwrites
     configobj
     vobject
@@ -43,9 +22,6 @@ in with python.pkgs; buildPythonApplication rec {
     install -D misc/zsh/_khard $out/share/zsh/site-functions/_khard
   '';
 
-  # Fails; but there are no tests anyway.
-  doCheck = false;
-
   meta = {
     homepage = https://github.com/scheibler/khard;
     description = "Console carddav client";

pkgs/applications/networking/browsers/brave/default.nix

@@ -82,11 +82,11 @@ in
 
 stdenv.mkDerivation rec {
   pname = "brave";
-  version = "0.69.135";
+  version = "1.0.0";
 
   src = fetchurl {
     url = "https://github.com/brave/brave-browser/releases/download/v${version}/brave-browser_${version}_amd64.deb";
-    sha256 = "1ahxciiilpaz2zdmi25lpw0x2mgwvd8acjn7h11i2ciqw0xbl3iy";
+    sha256 = "0mfwwyc00v6kny1fh20kaad8b6sshaxrlf35z9qcdsbm4n19wg1l";
   };
 
   dontConfigure = true;
@@ -151,7 +151,7 @@ stdenv.mkDerivation rec {
       contribute to your favorite creators automatically.
     '';
     license = licenses.mpl20;
-    maintainers = [ maintainers.uskudnik ];
+    maintainers = with maintainers; [ uskudnik rht ];
     platforms = [ "x86_64-linux" ];
   };
 }

pkgs/applications/networking/browsers/chromium/upstream-info.nix

@@ -1,18 +1,18 @@
 # This file is autogenerated from update.sh in the same directory.
 {
   beta = {
-    sha256 = "0pw0z35v04jzcnshsfwbc8cz95cl0dq6405rlmh2a3xz2gxaacqi";
-    sha256bin64 = "1xyvaksik5a1jkkv7zqyys33n8x0n7q8xzf5mpgj71iany57z2sv";
-    version = "79.0.3945.16";
+    sha256 = "1n45pfpjqrpzmy7k2ps498mm273bpzfda58dz78lbdm6r7z3s7av";
+    sha256bin64 = "1rf31v1ipix8c6q4blqjrn2ap3pxnlrpfx7037qjpg84zhip0zpc";
+    version = "79.0.3945.29";
   };
   dev = {
-    sha256 = "169iwzqc5zvbmm7cq1q185w2j2y2r716pbgpadps7ng2i47z6rqs";
-    sha256bin64 = "0ravjdmmbwlf3ydgmk7hdd5d92zxh67nv49igr5km6mr4fi1xsw2";
-    version = "80.0.3955.4";
+    sha256 = "1zj0nmj1687xsyzlh1hy2wblxv1qgdy2kj9h8bmqhld16laxwqw5";
+    sha256bin64 = "1x8wpdz18cflvj2ambqwyhzq206dil4szh1s8paqw1jwncaw7gjf";
+    version = "80.0.3962.2";
   };
   stable = {
-    sha256 = "0mpb7798hzpysidp10k4x54b56c3fm7wqfj4s3kl7z47835gzxld";
-    sha256bin64 = "1y75687w0rls03yps63hi4m0qfdm0qzgq1jhp1jicyyhjkp0xw5q";
-    version = "78.0.3904.87";
+    sha256 = "01wx5bi397d80za0sdfwgfbjj6n2ad2i31zmcrhm6wzryjwrmx6i";
+    sha256bin64 = "1nwhyasqxkxkx5pn2j9dx95mblj5w7fkh2zwvjz763b331w65ivp";
+    version = "78.0.3904.97";
   };
 }

pkgs/applications/networking/cluster/atlantis/default.nix

@@ -0,0 +1,25 @@
+{ stdenv, buildGoModule, fetchFromGitHub }:
+
+buildGoModule rec {
+  pname = "atlantis";
+  version = "0.10.1";
+
+  src = fetchFromGitHub {
+    owner = "runatlantis";
+    repo = "atlantis";
+    rev = "v${version}";
+    sha256 = "08k2dgz6rph68647ah1rdp7hqa5h1ar4gdy7vdjy5kn7gz21gmri";
+  };
+
+  modSha256 = "1i4s3xcq2qc3zy00wk2l77935ilm6n5k1msilmdnj0061ia4860y";
+
+  subPackages = [ "." ];
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/runatlantis/atlantis;
+    description = "Terraform Pull Request Automation";
+    platforms = platforms.all;
+    license = licenses.asl20;
+    maintainers = with maintainers; [ jpotier ];
+  };
+}

pkgs/applications/networking/cluster/cni/plugins.nix

@@ -1,13 +1,13 @@
 { stdenv, lib, fetchFromGitHub, go, removeReferencesTo, buildGoPackage }:
 buildGoPackage rec {
   pname = "cni-plugins";
-  version = "0.8.2";
+  version = "0.8.3";
 
   src = fetchFromGitHub {
     owner = "containernetworking";
     repo = "plugins";
     rev = "v${version}";
-    sha256 = "0gyxa6mhiyxqw4wpn6r7wgr2kyvflzbdcqsk5ch0b6zih98144ia";
+    sha256 = "0dc4fs08x4x518yhgvq3drjvansnc0cb8rm4h5wiw7k3whjii3cd";
   };
 
   goDeps = ./plugins-deps.nix;
@@ -35,6 +35,6 @@ buildGoPackage rec {
     homepage = https://github.com/containernetworking/plugins;
     license = licenses.asl20;
     platforms = platforms.linux;
-    maintainers = with maintainers; [ cstrahan ];
+    maintainers = with maintainers; [ cstrahan saschagrunert ];
   };
 }

pkgs/applications/networking/cluster/helm/default.nix

@@ -1,48 +1,25 @@
-{ stdenv, buildGoPackage, fetchFromGitHub }:
+{ stdenv, buildGoModule, fetchFromGitHub }:
 
-buildGoPackage rec {
-  version = "2.15.1";
+buildGoModule rec {
   pname = "helm";
+  version = "3.0.0";
 
   src = fetchFromGitHub {
     owner = "helm";
     repo = "helm";
     rev = "v${version}";
-    sha256 = "1afbymgpax7kgjjv1c9xb4dm7gcrhn2g69piamdq1k0ng348k5w0";
+    sha256 = "0gx5gmj1470q3gj8v043dmm31skf83p1ckzdcfzx8wdjlglsljrj";
   };
+  modSha256 = "0xjzzwmq3i77anb7w2qfnz7vc0gxq02lylj0xs6dzwl543winshm";
 
   goPackagePath = "k8s.io/helm";
-  subPackages = [ "cmd/helm" "cmd/tiller" "cmd/rudder" ];
-
-  goDeps = ./deps.nix;
-
-  # Thsese are the original flags from the helm makefile
-  buildFlagsArray = ''
-    -ldflags=-X k8s.io/helm/pkg/version.Version=v${version} -X k8s.io/helm/pkg/version.GitTreeState=clean -X k8s.io/helm/pkg/version.BuildMetadata=
-    -w
-    -s
-  '';
-
-  preBuild = ''
-    # This is a hack(?) to flatten the dependency tree the same way glide or dep would
-    # Otherwise you'll get errors like
-    # have DeepCopyObject() "k8s.io/kubernetes/vendor/k8s.io/apimachinery/pkg/runtime".Object
-    # want DeepCopyObject() "k8s.io/apimachinery/pkg/runtime".Object
-    rm -rf $NIX_BUILD_TOP/go/src/k8s.io/kubernetes/vendor
-    rm -rf $NIX_BUILD_TOP/go/src/k8s.io/apiextensions-apiserver/vendor
-  '';
-
-  postInstall = ''
-    mkdir -p $bin/share/bash-completion/completions
-    mkdir -p $bin/share/zsh/site-functions
-    $bin/bin/helm completion bash > $bin/share/bash-completion/completions/helm
-    $bin/bin/helm completion zsh > $bin/share/zsh/site-functions/_helm
-  '';
+  subPackages = [ "cmd/helm" ];
+  buildFlagsArray = [ "-ldflags=-w -s -X helm.sh/helm/v3/internal/version.gitCommit=v${version}" ];
 
   meta = with stdenv.lib; {
     homepage = https://github.com/kubernetes/helm;
     description = "A package manager for kubernetes";
     license = licenses.asl20;
-    maintainers = [ maintainers.rlupton20 maintainers.edude03 ];
+    maintainers = with maintainers; [ rlupton20 edude03 saschagrunert ];
   };
 }

pkgs/applications/networking/cluster/terraform/default.nix

@@ -1,28 +1,20 @@
-{ stdenv
-, lib
-, buildEnv
-, buildGoPackage
-, fetchFromGitHub
-, makeWrapper
-, runCommand
-, writeText
-, terraform-providers
-}:
+{ stdenv, lib, buildEnv, buildGoPackage, fetchFromGitHub, makeWrapper
+, runCommand, writeText, terraform-providers }:
 
 let
   goPackagePath = "github.com/hashicorp/terraform";
 
   generic = { version, sha256, ... }@attrs:
-    let attrs' = builtins.removeAttrs attrs ["version" "sha256"]; in
-    buildGoPackage ({
+    let attrs' = builtins.removeAttrs attrs [ "version" "sha256" ];
+    in buildGoPackage ({
       name = "terraform-${version}";
 
       inherit goPackagePath;
 
       src = fetchFromGitHub {
-        owner  = "hashicorp";
-        repo   = "terraform";
-        rev    = "v${version}";
+        owner = "hashicorp";
+        repo = "terraform";
+        rev = "v${version}";
         inherit sha256;
       };
 
@@ -40,10 +32,17 @@ let
       '';
 
       meta = with stdenv.lib; {
-        description = "Tool for building, changing, and versioning infrastructure";
-        homepage = https://www.terraform.io/;
+        description =
+          "Tool for building, changing, and versioning infrastructure";
+        homepage = "https://www.terraform.io/";
         license = licenses.mpl20;
-        maintainers = with maintainers; [ zimbatm peterhoeg kalbasit marsam ];
+        maintainers = with maintainers; [
+          zimbatm
+          peterhoeg
+          kalbasit
+          marsam
+          babariviere
+        ];
       };
     } // attrs');
 
@@ -54,38 +53,54 @@ let
           actualPlugins = plugins terraform.plugins;
 
           # Wrap PATH of plugins propagatedBuildInputs, plugins may have runtime dependencies on external binaries
-          wrapperInputs = lib.unique (lib.flatten (lib.catAttrs "propagatedBuildInputs" (builtins.filter (x: x != null) actualPlugins)));
+          wrapperInputs = lib.unique (lib.flatten
+            (lib.catAttrs "propagatedBuildInputs"
+              (builtins.filter (x: x != null) actualPlugins)));
 
           passthru = {
-            withPlugins = newplugins: withPlugins (x: newplugins x ++ actualPlugins);
+            withPlugins = newplugins:
+              withPlugins (x: newplugins x ++ actualPlugins);
             full = withPlugins lib.attrValues;
 
             # Ouch
-            overrideDerivation = f: (pluggable (terraform.overrideDerivation f)).withPlugins plugins;
-            overrideAttrs = f: (pluggable (terraform.overrideAttrs f)).withPlugins plugins;
-            override = x: (pluggable (terraform.override x)).withPlugins plugins;
+            overrideDerivation = f:
+              (pluggable (terraform.overrideDerivation f)).withPlugins plugins;
+            overrideAttrs = f:
+              (pluggable (terraform.overrideAttrs f)).withPlugins plugins;
+            override = x:
+              (pluggable (terraform.override x)).withPlugins plugins;
           };
-        in
           # Don't bother wrapping unless we actually have plugins, since the wrapper will stop automatic downloading
           # of plugins, which might be counterintuitive if someone just wants a vanilla Terraform.
-          if actualPlugins == []
-            then terraform.overrideAttrs (orig: { passthru = orig.passthru // passthru; })
-            else lib.appendToName "with-plugins"(stdenv.mkDerivation {
-              inherit (terraform) name;
-              buildInputs = [ makeWrapper ];
+        in if actualPlugins == [ ] then
+          terraform.overrideAttrs
+          (orig: { passthru = orig.passthru // passthru; })
+        else
+          lib.appendToName "with-plugins" (stdenv.mkDerivation {
+            inherit (terraform) name;
+            buildInputs = [ makeWrapper ];
 
-              buildCommand = ''
-                mkdir -p $out/bin/
-                makeWrapper "${terraform.bin}/bin/terraform" "$out/bin/terraform" \
-                  --set NIX_TERRAFORM_PLUGIN_DIR "${buildEnv { name = "tf-plugin-env"; paths = actualPlugins; }}/bin" \
-                  --prefix PATH : "${lib.makeBinPath wrapperInputs}"
-              '';
+            buildCommand = ''
+              mkdir -p $out/bin/
+              makeWrapper "${terraform.bin}/bin/terraform" "$out/bin/terraform" \
+                --set NIX_TERRAFORM_PLUGIN_DIR "${
+                  buildEnv {
+                    name = "tf-plugin-env";
+                    paths = actualPlugins;
+                  }
+                }/bin" \
+                --prefix PATH : "${lib.makeBinPath wrapperInputs}"
+            '';
 
-              inherit passthru;
-            });
-    in withPlugins (_: []);
+            inherit passthru;
+          });
+    in withPlugins (_: [ ]);
 
-  plugins = removeAttrs terraform-providers ["override" "overrideDerivation" "recurseForDerivations"];
+  plugins = removeAttrs terraform-providers [
+    "override"
+    "overrideDerivation"
+    "recurseForDerivations"
+  ];
 in rec {
   terraform_0_11 = pluggable (generic {
     version = "0.11.14";
@@ -97,8 +112,8 @@ in rec {
   terraform_0_11-full = terraform_0_11.full;
 
   terraform_0_12 = pluggable (generic {
-    version = "0.12.13";
-    sha256 = "11nbr9avw6jx349jdmxgxiawk8i5mpw3p4rrl89yly0wfhg0fh4a";
+    version = "0.12.14";
+    sha256 = "0pq4sfnnlj91gxyxvyzzrgglnvh8xpan90gnc9jvnnb23iv4q96l";
     patches = [ ./provider-path.patch ];
     passthru = { inherit plugins; };
   });
@@ -112,8 +127,8 @@ in rec {
       resource "random_id" "test" {}
     '';
     terraform = terraform_0_11.withPlugins (p: [ p.random ]);
-    test = runCommand "terraform-plugin-test" { buildInputs = [terraform]; }
-      ''
+    test =
+      runCommand "terraform-plugin-test" { buildInputs = [ terraform ]; } ''
         set -e
         # make it fail outside of sandbox
         export HTTP_PROXY=http://127.0.0.1:0 HTTPS_PROXY=https://127.0.0.1:0

pkgs/applications/networking/davmail/default.nix

@@ -2,10 +2,10 @@
 
 stdenv.mkDerivation rec {
   pname = "davmail";
-  version = "5.2.0";
+  version = "5.4.0";
   src = fetchurl {
-    url = "mirror://sourceforge/${pname}/${version}/${pname}-${version}-2961.zip";
-    sha256 = "0jw6sjg7k7zg8ab0srz6cjjj5hnw5ppxx1w35sw055dlg54fh2m5";
+    url = "mirror://sourceforge/${pname}/${version}/${pname}-${version}-3135.zip";
+    sha256 = "05n2j5canh046744arvni6yfdsandvjkld93w3p7rg116jrh19gq";
   };
 
   sourceRoot = ".";

pkgs/applications/networking/instant-messengers/mattermost-desktop/default.nix

@@ -78,6 +78,9 @@ in
       rm $out/share/mattermost-desktop/create_desktop_file.sh
       mkdir -p $out/share/applications
       mv Mattermost.desktop $out/share/applications/Mattermost.desktop
+      substituteInPlace \
+        $out/share/applications/Mattermost.desktop \
+        --replace /share/mattermost-desktop/mattermost-desktop /bin/mattermost-desktop
 
       patchelf \
         --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \

pkgs/applications/networking/instant-messengers/signal-desktop/default.nix

@@ -59,7 +59,7 @@ let
 
 in stdenv.mkDerivation rec {
   pname = "signal-desktop";
-  version = "1.27.4"; # Please backport all updates to the stable channel.
+  version = "1.28.0"; # Please backport all updates to the stable channel.
   # All releases have a limited lifetime and "expire" 90 days after the release.
   # When releases "expire" the application becomes unusable until an update is
   # applied. The expiration date for the current release can be extracted with:
@@ -69,7 +69,7 @@ in stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "https://updates.signal.org/desktop/apt/pool/main/s/signal-desktop/signal-desktop_${version}_amd64.deb";
-    sha256 = "1aza1s70xzx9qkv7b5mpfi4zgdn5dq3rl03lx3jixij3x3pxg5sj";
+    sha256 = "14cd635fax99l5jk70jy0mjnvw01b0gbv666szc4ajamm36l2bkr";
   };
 
   phases = [ "unpackPhase" "installPhase" ];

pkgs/applications/networking/mailreaders/afew/default.nix

@@ -1,19 +1,19 @@
-{ stdenv, pythonPackages, notmuch }:
+{ stdenv, python3Packages, notmuch }:
 
-pythonPackages.buildPythonApplication rec {
+python3Packages.buildPythonApplication rec {
   pname = "afew";
   version = "2.0.0";
 
-  src = pythonPackages.fetchPypi {
+  src = python3Packages.fetchPypi {
     inherit pname version;
     sha256 = "0j60501nm242idf2ig0h7p6wrg58n5v2p6zfym56v9pbvnbmns0s";
   };
 
-  nativeBuildInputs = with pythonPackages; [ sphinx setuptools_scm ];
+  nativeBuildInputs = with python3Packages; [ sphinx setuptools_scm ];
 
-  propagatedBuildInputs = with pythonPackages; [
-    pythonPackages.setuptools pythonPackages.notmuch chardet dkimpy
-  ] ++ stdenv.lib.optional (!pythonPackages.isPy3k) subprocess32;
+  propagatedBuildInputs = with python3Packages; [
+    python3Packages.setuptools python3Packages.notmuch chardet dkimpy
+  ] ++ stdenv.lib.optional (!python3Packages.isPy3k) subprocess32;
 
   makeWrapperArgs = [
     ''--prefix PATH ':' "${notmuch}/bin"''
@@ -22,7 +22,7 @@ pythonPackages.buildPythonApplication rec {
   outputs = [ "out" "doc" ];
 
   postBuild =  ''
-    python setup.py build_sphinx -b html,man
+    ${python3Packages.python.interpreter} setup.py build_sphinx -b html,man
   '';
 
   postInstall = ''

pkgs/applications/networking/mailreaders/imapfilter.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "imapfilter";
-  version = "2.6.13";
+  version = "2.6.14";
 
   src = fetchFromGitHub {
     owner = "lefcha";
     repo = "imapfilter";
     rev = "v${version}";
-    sha256 = "02997rnnvid3rfkxmlgjpbspi4svdmq8r8wd2zvf25iadim3hxqi";
+    sha256 = "09aq9gw1vz0zl6k4fb4zdm6cpjhddsl13asfjx3qy21pbw0azmj6";
   };
 
   makeFlagsArray = "PREFIX=$(out)";

pkgs/applications/networking/protocol/default.nix

@@ -1,14 +1,14 @@
 { stdenv, buildPythonApplication, fetchFromGitHub }:
 
 buildPythonApplication {
-  pname = "protocol";
-  version = "20171226";
+  pname = "protocol-unstable";
+  version = "2019-03-28";
 
   src = fetchFromGitHub {
     owner = "luismartingarcia";
     repo = "protocol";
-    rev = "d450da7d8a58595d8ef82f1d199a80411029fc7d";
-    sha256 = "1g31s2xx0bw8ak5ag1c6mv0p0b8bj5dp3lkk9mxaf2ndj1m1qdkw";
+    rev = "4e8326ea6c2d288be5464c3a7d9398df468c0ada";
+    sha256 = "13l10jhf4vghanmhh3pn91b2jdciispxy0qadz4n08blp85qn9cm";
   };
 
   meta = with stdenv.lib; {

pkgs/applications/networking/sync/onedrive/default.nix

@@ -8,13 +8,13 @@
 
 stdenv.mkDerivation rec {
   pname = "onedrive";
-  version = "2.3.10";
+  version = "2.3.11";
 
   src = fetchFromGitHub {
     owner = "abraunegg";
     repo = "onedrive";
     rev = "v${version}";
-    sha256 = "0ks22anxih63zwlc11z0gi531wvcricbkv1wlkrgfihi58l8fhfk";
+    sha256 = "08k5b3izqzk9mjjny5y47i3q5sl0w37xdqrhaacjxwm0jib9w0mh";
   };
 
   nativeBuildInputs = [
@@ -29,7 +29,7 @@ stdenv.mkDerivation rec {
     description = "A complete tool to interact with OneDrive on Linux";
     homepage = "https://github.com/abraunegg/onedrive";
     license = licenses.gpl3;
-    maintainers = with maintainers; [ doronbehar ];
+    maintainers = with maintainers; [ doronbehar srgom ];
     platforms = platforms.linux;
   };
 }

pkgs/applications/office/atlassian-cli/default.nix

@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "atlassian-cli";
-  version = "8.5.0";
+  version = "9.0.0";
   
   src = fetchzip {
     url  = "https://bobswift.atlassian.net/wiki/download/attachments/16285777/${pname}-${version}-distribution.zip";
-    sha256  = "0c9jq7q0bx0db0zhdh89bv1ijfg7cddbx04v451vl8caqcyhkfgz";
+    sha256  = "1z8723krq65fcy5aapgiz216vrpw2nw8fbn1h3a4zpis7kw8qp0f";
     extraPostFetch = "chmod go-w $out";
   };
   

pkgs/applications/office/fava/default.nix

@@ -25,6 +25,7 @@ buildPythonApplication rec {
       markdown2
       ply
       simplejson
+      jaraco_functools
     ];
 
   # CLI test expects fava on $PATH.  Not sure why static_url fails.

pkgs/applications/office/mendeley/default.nix

@@ -1,4 +1,4 @@
-{ fetchurl, stdenv, dpkg, which
+{ fetchurl, stdenv, mkDerivation, dpkg, which
 , makeWrapper
 , alsaLib
 , desktop-file-utils
@@ -90,7 +90,7 @@ let
 
 in
 
-stdenv.mkDerivation {
+mkDerivation {
   pname = "mendeley";
   inherit version;
 
@@ -106,6 +106,8 @@ stdenv.mkDerivation {
 
   dontUnpack = true;
 
+  dontWrapQtApps = true;
+
   installPhase = ''
     dpkg-deb -x $src $out
     mv $out/opt/mendeleydesktop/{bin,lib,share} $out
@@ -115,7 +117,7 @@ stdenv.mkDerivation {
              --set-rpath ${stdenv.lib.makeLibraryPath deps}:$out/lib \
              $out/bin/mendeleydesktop
 
-    wrapProgram $out/bin/mendeleydesktop \
+    wrapQtApp $out/bin/mendeleydesktop \
       --add-flags "--unix-distro-build" \
       ${stdenv.lib.optionalString autorunLinkHandler # ignore errors installing the link handler
       ''--run "$out/bin/install-mendeley-link-handler.sh $out/bin/mendeleydesktop ||:"''}

pkgs/applications/radio/urh/default.nix

@@ -1,25 +1,31 @@
 { stdenv, lib, fetchFromGitHub, python3Packages
 , hackrf, rtl-sdr, airspy, limesuite, libiio
+, qt5
 , USRPSupport ? false, uhd }:
 
 python3Packages.buildPythonApplication rec {
   pname = "urh";
-  version = "2.7.3";
+  version = "2.8.0";
 
   src = fetchFromGitHub {
     owner = "jopohl";
     repo = pname;
     rev = "v${version}";
-    sha256 = "1jrrj9c4ddm37m8j0g693xjimpnlvx7lan5kxish5p14xpwdak35";
+    sha256 = "1c87lff9bqhf574420ycqz88x6ad5hmy36wrb8pi0dqd1s1d72qb";
   };
 
+  nativeBuildInputs = [ qt5.wrapQtAppsHook ];
   buildInputs = [ hackrf rtl-sdr airspy limesuite libiio ]
     ++ lib.optional USRPSupport uhd;
 
   propagatedBuildInputs = with python3Packages; [
-    pyqt5 numpy psutil cython pyzmq pyaudio
+    pyqt5 numpy psutil cython pyzmq pyaudio setuptools
   ];
 
+  postFixup = ''
+    wrapQtApp $out/bin/urh
+  '';
+
   doCheck = false;
 
   meta = with lib; {

pkgs/applications/science/electronics/eagle/eagle.nix

@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, makeDesktopItem
+{ stdenv, mkDerivation, fetchurl, makeDesktopItem
 , libXrender, libXrandr, libXcursor, libX11, libXext, libXi, libxcb
  , libGL, glib, nss, nspr, expat, alsaLib
 , qtbase, qtdeclarative, qtsvg, qtlocation, qtwebchannel, qtwebengine
@@ -11,7 +11,7 @@ let
       qtbase qtdeclarative qtsvg qtlocation qtwebchannel qtwebengine
     ];
   in
-  stdenv.mkDerivation rec {
+  mkDerivation rec {
     pname = "eagle";
     version = "9.5.0";
 

pkgs/applications/science/logic/why3/default.nix

@@ -3,11 +3,11 @@
 
 stdenv.mkDerivation {
   pname = "why3";
-  version = "1.2.0";
+  version = "1.2.1";
 
   src = fetchurl {
-    url = https://gforge.inria.fr/frs/download.php/file/37903/why3-1.2.0.tar.gz;
-    sha256 = "0xz001jhi71ja8vqrjz27v63bidrzj4qvg1yqarq6p4dmpxhk348";
+    url = https://gforge.inria.fr/frs/download.php/file/38185/why3-1.2.1.tar.gz;
+    sha256 = "014gkwisjp05x3342zxkryb729p02ngx1hcjjsrplpa53jzgz647";
   };
 
   buildInputs = with ocamlPackages; [

pkgs/applications/science/math/mathematica/default.nix

@@ -93,13 +93,16 @@ stdenv.mkDerivation rec {
     # Fix library paths
     cd $out/libexec/Mathematica/Executables
     for path in mathematica MathKernel Mathematica WolframKernel wolfram math; do
-      sed -i -e 's#export LD_LIBRARY_PATH$#export LD_LIBRARY_PATH=${zlib}/lib:\''${LD_LIBRARY_PATH}#' $path
+      sed -i -e "2iexport LD_LIBRARY_PATH=${zlib}/lib:\''${LD_LIBRARY_PATH}\n" $path
     done
 
     # Fix xkeyboard config path for Qt
     for path in mathematica Mathematica; do
       sed -i -e "2iexport QT_XKB_CONFIG_ROOT=\"${xkeyboard_config}/share/X11/xkb\"\n" $path
     done
+
+    # Remove some broken libraries
+    rm $out/libexec/Mathematica/SystemFiles/Libraries/Linux-x86-64/libz.so*
   '';
 
   preFixup = ''

pkgs/applications/science/misc/snakemake/default.nix

@@ -1,28 +1,26 @@
-{
-  stdenv
-, python
-}:
+{ stdenv, python3Packages }:
 
-python.buildPythonPackage rec {
+python3Packages.buildPythonApplication rec {
   pname = "snakemake";
-  version = "5.4.4";
+  version = "5.7.4";
 
-  propagatedBuildInputs = with python; [
+  propagatedBuildInputs = with python3Packages; [
     appdirs
     ConfigArgParse
     datrie
     docutils
     GitPython
     jsonschema
+    psutil
     pyyaml
     ratelimiter
     requests
     wrapt
   ];
 
-  src = python.fetchPypi {
+  src = python3Packages.fetchPypi {
     inherit pname version;
-    sha256 = "157323e0e1be34302edbbf399b2acbe25a4291bceffd47a0469963a970c9375f";
+    sha256 = "11f2f00c505d928b91332056667d49c96ed1694bf78e798ce27613948d44a2a2";
   };
 
   doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json

pkgs/applications/version-management/git-and-tools/git-extras/default.nix

@@ -1,19 +1,26 @@
-{ stdenv, fetchurl }:
+{ stdenv, fetchzip, unixtools, which }:
 
 stdenv.mkDerivation rec {
   pname = "git-extras";
-  version = "4.7.0";
+  version = "5.0.0";
 
-  src = fetchurl {
+  src = fetchzip {
     url = "https://github.com/tj/git-extras/archive/${version}.tar.gz";
-    sha256 = "0pab4f5kmmcn333aswkgndf1fgilc41h8h0rk3lviz0yi8j59vaq";
+    sha256 = "0c839kc5mhi1iqhc696p4dj67i5hm2gi4d8cvdpskaapb124mj2f";
   };
 
+  nativeBuildInputs = [ unixtools.column which ];
+
   dontBuild = true;
 
-  installFlags = [ "DESTDIR=${placeholder "out"}" "PREFIX=" ];
+  preInstall = ''
+    patchShebangs .
+  '';
+
+  installFlags = [ "PREFIX=${placeholder "out"}" ];
 
   postInstall = ''
+    # bash completion is already handled by make install
     install -D etc/git-extras-completion.zsh $out/share/zsh/site-functions/_git_extras
   '';
 

pkgs/applications/video/celluloid/default.nix

@@ -16,13 +16,13 @@
 
 stdenv.mkDerivation rec {
   pname = "celluloid";
-  version = "0.17";
+  version = "0.18";
 
   src = fetchFromGitHub {
     owner = "celluloid-player";
     repo = "celluloid";
     rev = "v${version}";
-    sha256 = "0pnxjv6n2q6igxdr8wzbahcj7vccw4nfjdk8fjdnaivf2lyrpv2d";
+    sha256 = "1j8z75y98liirr41rlcn89cshvp1xp71cspcclm6wx455i7q2cg1";
   };
 
   nativeBuildInputs = [
@@ -45,7 +45,6 @@ stdenv.mkDerivation rec {
 
   postPatch = ''
     patchShebangs meson-post-install.py src/generate-authors.py
-    sed -i '/gtk-update-icon-cache/s/^/#/' meson-post-install.py
   '';
 
   doCheck = true;
@@ -59,6 +58,7 @@ stdenv.mkDerivation rec {
     '';
     homepage = "https://github.com/celluloid-player/celluloid";
     license = licenses.gpl3Plus;
+    maintainers = with maintainers; [ worldofpeace ];
     platforms = platforms.linux;
   };
 }

pkgs/applications/video/mpv/default.nix

@@ -39,7 +39,7 @@
 , pulseSupport       ? config.pulseaudio or stdenv.isLinux, libpulseaudio ? null
 , rubberbandSupport  ? stdenv.isLinux, rubberband    ? null
 , screenSaverSupport ? true,           libXScrnSaver ? null
-, sambaSupport       ? true,           samba         ? null
+, sambaSupport       ? stdenv.isLinux, samba         ? null
 , sdl2Support        ? true,           SDL2          ? null
 , sndioSupport       ? true,           sndio         ? null
 , speexSupport       ? true,           speex         ? null

pkgs/applications/video/obs-studio/fix-search-path.patch

@@ -0,0 +1,13 @@
+diff --git a/external/FindLibObs.cmake b/external/FindLibObs.cmake
+index ab0a3de..19c63ee 100644
+--- a/external/FindLibObs.cmake
++++ b/external/FindLibObs.cmake
+@@ -95,7 +95,7 @@ if(LIBOBS_FOUND)
+ 
+ 	set(LIBOBS_INCLUDE_DIRS ${LIBOBS_INCLUDE_DIR} ${W32_PTHREADS_INCLUDE_DIR})
+ 	set(LIBOBS_LIBRARIES ${LIBOBS_LIB} ${W32_PTHREADS_LIB})
+-	include(${LIBOBS_INCLUDE_DIR}/../cmake/external/ObsPluginHelpers.cmake)
++	include(external/ObsPluginHelpers.cmake)
+ 
+ 	# allows external plugins to easily use/share common dependencies that are often included with libobs (such as FFmpeg)
+ 	if(NOT DEFINED INCLUDED_LIBOBS_CMAKE_MODULES)

pkgs/applications/video/obs-studio/obs-ndi.nix

@@ -0,0 +1,39 @@
+# We don't have a wrapper which can supply obs-studio plugins so you have to
+# somewhat manually install this:
+
+# nix-env -f "<nixpkgs>" -iA obs-ndi
+# mkdir -p ~/.config/obs-studio/plugins
+# ln -s ~/.nix-profile/share/obs/obs-plugins/obs-ndi ~/.config/obs-studio/plugins/
+
+{ stdenv, fetchFromGitHub, obs-studio, cmake, qt5 }:
+
+stdenv.mkDerivation rec {
+  pname = "obs-ndi";
+  version = "4.7.1";
+
+  src = fetchFromGitHub {
+    owner = "Palakis";
+    repo = "obs-ndi";
+    rev = version;
+    sha256 = "040fkbf3f3qgqcrd3072y3zrjb4fwga8zr10jym744xd7bgyylqh";
+  };
+
+  patches = [ ./fix-search-path.patch ];
+
+  nativeBuildInputs = [ cmake ];
+  buildInputs = [ obs-studio qt5.qtbase ];
+
+  cmakeFlags = [
+    "-DLIBOBS_INCLUDE_DIR=${obs-studio}/include/obs"
+    "-DLIBOBS_LIB=${obs-studio}/lib"
+    "-DCMAKE_CXX_FLAGS=-I${obs-studio.src}/UI/obs-frontend-api"
+  ];
+
+  meta = with stdenv.lib; {
+    description = "Network A/V plugin for OBS Studio";
+    homepage = https://github.com/Palakis/obs-ndi;
+    maintainers = with maintainers; [ peti ];
+    license = licenses.gpl2;
+    platforms = with platforms; linux;
+  };
+}

pkgs/applications/virtualization/conmon/default.nix

@@ -9,13 +9,13 @@
 stdenv.mkDerivation rec {
   project = "conmon";
   name = "${project}-${version}";
-  version = "2.0.2";
+  version = "2.0.3";
 
   src = fetchFromGitHub {
     owner = "containers";
     repo = project;
     rev = "v${version}";
-    sha256 = "1ha5vhjlb12kshh0j1vpl1vjk8ym9w2j1x762y6zdspkdha1w3dv";
+    sha256 = "0xsirdsgq84bsjb1xgzv3pnjhm9l13vwj79zd8rjdd7p28wsxb0y";
   };
 
   nativeBuildInputs = [ pkgconfig ];

pkgs/build-support/fetchgit/private.nix

@@ -1,26 +0,0 @@
-{ fetchgit, runCommand, makeWrapper, openssh }: args: derivation ((fetchgit args).drvAttrs // {
-  SSH_AUTH_SOCK = if (builtins.tryEval <ssh-auth-sock>).success
-    then builtins.toString <ssh-auth-sock>
-    else null;
-
-  GIT_SSH = let
-    config = let
-        sshConfigFile = if (builtins.tryEval <ssh-config-file>).success
-          then <ssh-config-file>
-          else builtins.trace ''
-            Please set your nix-path such that ssh-config-file points to a file that will allow ssh to access private repositories. The builder will not be able to see any running ssh agent sessions unless ssh-auth-sock is also set in the nix-path.
-
-            Note that the config file and any keys it points to must be readable by the build user, which depending on your nix configuration means making it readable by the build-users-group, the user of the running nix-daemon, or the user calling the nix command which started the build. Similarly, if using an ssh agent ssh-auth-sock must point to a socket the build user can access.
-
-            You may need StrictHostKeyChecking=no in the config file. Since ssh will refuse to use a group-readable private key, if using build-users you will likely want to use something like IdentityFile /some/directory/%u/key and have a directory for each build user accessible to that user.
-          '' "/var/lib/empty/config";
-      in builtins.toString sshConfigFile;
-
-    ssh-wrapped = runCommand "fetchgit-ssh" {
-      nativeBuildInputs = [ makeWrapper ];
-    } ''
-      mkdir -p $out/bin
-      makeWrapper ${openssh}/bin/ssh $out/bin/ssh --prefix PATH : "$out/bin" --add-flags "-F ${config}" "$@"
-    '';
-  in "${ssh-wrapped}/bin/ssh";
-})

pkgs/build-support/ocaml/default.nix

@@ -23,7 +23,7 @@ stdenv.mkDerivation (args // {
 
   setupHook = if setupHook == null && hasSharedObjects
   then writeText "setupHook.sh" ''
-    export CAML_LD_LIBRARY_PATH="''${CAML_LD_LIBRARY_PATH}''${CAML_LD_LIBRARY_PATH:+:}''$1/lib/ocaml/${ocaml.version}/site-lib/${name}/"
+    export CAML_LD_LIBRARY_PATH="''${CAML_LD_LIBRARY_PATH-}''${CAML_LD_LIBRARY_PATH:+:}''$1/lib/ocaml/${ocaml.version}/site-lib/${name}/"
     ''
   else setupHook;
 

pkgs/data/fonts/xits-math/default.nix

@@ -1,17 +1,17 @@
-{ stdenv, fetchFromGitHub, python2Packages, fontforge }:
+{ stdenv, fetchFromGitHub, python3Packages}:
 
 stdenv.mkDerivation rec {
   pname = "xits-math";
-  version = "1.200";
+  version = "1.301";
 
   src = fetchFromGitHub {
     owner = "alif-type";
     repo = "xits";
     rev = "v${version}";
-    sha256 = "0s1qqqg3zv9k4wqn1vkx0z895fjccg96n58syc1d5f2wba9kyfcm";
+    sha256 = "043g0gnjc7wn1szvrs0rc1vvrq1qmhqh45b0y2kwrlxsgprpv8ll";
   };
 
-  nativeBuildInputs = [ fontforge ] ++ (with python2Packages; [ python fonttools ]);
+  nativeBuildInputs = (with python3Packages; [ python fonttools fontforge ]);
 
   postPatch = ''
     rm *.otf
@@ -22,7 +22,7 @@ stdenv.mkDerivation rec {
   '';
 
   meta = with stdenv.lib; {
-    homepage = https://github.com/khaledhosny/xits-math;
+    homepage = "https://github.com/alif-type/xits";
     description = "OpenType implementation of STIX fonts with math support";
     license = licenses.ofl;
     platforms = platforms.all;

pkgs/desktops/deepin/dde-api/default.nix

@@ -24,7 +24,7 @@
 
 buildGoPackage rec {
   pname = "dde-api";
-  version = "3.18.4.1";
+  version = "5.0.0";
 
   goPackagePath = "pkg.deepin.io/dde/api";
 
@@ -32,7 +32,7 @@ buildGoPackage rec {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "0bcjp5ijwa4wmx6p43lik6vjlb7d5rk7nf8xl495i3yk9x70wyfa";
+    sha256 = "0iv4krj6dqdknwvmax7aj40k1h96259kqcfnljadrwpl7cvsvp5p";
   };
 
   goDeps = ./deps.nix;

pkgs/desktops/deepin/dde-api/deps.nix

@@ -5,8 +5,8 @@
     fetch = {
       type = "git";
       url = "https://github.com/alecthomas/template";
-      rev = "a0175ee3bccc567396460bf5acd36800cb10c49c";
-      sha256 = "0qjgvvh26vk1cyfq9fadyhfgdj36f1iapbmr5xp6zqipldz8ffxj";
+      rev = "fb15b899a75114aa79cc930e33c46b577cc664b1";
+      sha256 = "1vlasv4dgycydh5wx6jdcvz40zdv90zz1h7836z7lhsi2ymvii26";
     };
   }
   {
@@ -14,8 +14,8 @@
     fetch = {
       type = "git";
       url = "https://github.com/alecthomas/units";
-      rev = "2efee857e7cfd4f3d0138cc3cbb1b4966962b93a";
-      sha256 = "1j65b91qb9sbrml9cpabfrcf07wmgzzghrl7809hjjhrmbzri5bl";
+      rev = "f65c72e2690dc4b403c8bd637baf4611cd4c069b";
+      sha256 = "04jyqm7m3m01ppfy1f9xk4qvrwvs78q9zml6llyf2b3v5k6b2bbc";
     };
   }
   {
@@ -32,8 +32,8 @@
     fetch = {
       type = "git";
       url = "https://github.com/disintegration/imaging";
-      rev = "465faf0892b5c7b3325643b0e47282e1331672e7";
-      sha256 = "1z9rkphmqgyphznl53pp1gmf0dfrfrmr95bx46p422ldml26c5a0";
+      rev = "9aab30e6aa535fe3337b489b76759ef97dfaf362";
+      sha256 = "015amm3x989hl3r4gxnixj602fl9j8z53n0lrq804cbfbk7a31fw";
     };
   }
   {
@@ -41,8 +41,8 @@
     fetch = {
       type = "git";
       url = "https://github.com/fogleman/gg";
-      rev = "f194ddec6f45226fc9e1b4a61b7237f186edd543";
-      sha256 = "095g5hpqvpy5w9l4kb65cif013snsvlbw6sgln0kwdix0z099j3i";
+      rev = "4dc34561c649343936bb2d29e23959bd6d98ab12";
+      sha256 = "1x1finzdrr80dd3r7wvf7zb184yjf4dawz7s581p2dr64dcialww";
     };
   }
   {
@@ -77,8 +77,8 @@
     fetch = {
       type = "git";
       url = "https://go.googlesource.com/image";
-      rev = "7e034cad644213bc79b336b52fce73624259aeca";
-      sha256 = "04n4yi0p2yjv8sr9dmnzwc2k6hvzzvl6jdq2xd043kvjwzk583va";
+      rev = "e7c1f5e7dbb87d8921928a6d9fc52fb31ce73b24";
+      sha256 = "0czp897aicqw1dgybj0hc2zzwb20rhqkdqm7siqci3yk7yk9cymf";
     };
   }
   {
@@ -86,8 +86,8 @@
     fetch = {
       type = "git";
       url = "https://go.googlesource.com/net";
-      rev = "3b0461eec859c4b73bb64fdc8285971fd33e3938";
-      sha256 = "0l00c8l0a8xnv6qdpwfzxxsr58jggacgzdrwiprrfx2xqm37b6d5";
+      rev = "daa7c04131f568e31c51927b359a2d197a357058";
+      sha256 = "17gbfvb5iqyayzw0zd6q218zsbf7x74rflvn18wkxvsw95n1y54h";
     };
   }
   {

pkgs/desktops/deepin/dde-calendar/default.nix

@@ -4,13 +4,13 @@
 
 mkDerivation rec {
   pname = "dde-calendar";
-  version = "1.2.10";
+  version = "5.0.1";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "00aqx24jccf88vvkpb9svyjz8knrqyjgd0152psf9dxc9q13f61h";
+    sha256 = "1zzr3crkz4l5l135y0m53vqhv7fkrbvbspk8295swz9gsm3f7ah9";
   };
 
   nativeBuildInputs = [

pkgs/desktops/deepin/dde-control-center/default.nix

@@ -8,13 +8,13 @@
 
 mkDerivation rec {
   pname = "dde-control-center";
-  version = "4.10.11";
+  version = "5.0.0";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "1ip8wjwf0n9q8xnqymzh8lz0j5gcnns976n291np6k5kdh2wqhr5";
+    sha256 = "10bx8bpvi3ib32a3l4nyb1j0iq3bch8jm9wfm6d5v0ym1zb92x3b";
   };
 
   nativeBuildInputs = [

pkgs/desktops/deepin/dde-daemon/default.nix

@@ -8,7 +8,7 @@
 
 buildGoPackage rec {
   pname = "dde-daemon";
-  version = "3.27.2.6";
+  version = "5.0.0";
 
   goPackagePath = "pkg.deepin.io/dde/daemon";
 
@@ -16,7 +16,7 @@ buildGoPackage rec {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "14g138h23f1lh1y98pdrfhnph1m7pw8lq8ypiwv9qf3fmdyn35d4";
+    sha256 = "08jri31bvzbaxaq78rpp46ndv0li2dij63hakvd9b9gs786srql1";
   };
 
   patches = [

pkgs/desktops/deepin/dde-daemon/deps.nix

@@ -5,8 +5,8 @@
     fetch = {
       type = "git";
       url = "https://github.com/alecthomas/template";
-      rev = "a0175ee3bccc567396460bf5acd36800cb10c49c";
-      sha256 = "0qjgvvh26vk1cyfq9fadyhfgdj36f1iapbmr5xp6zqipldz8ffxj";
+      rev = "fb15b899a75114aa79cc930e33c46b577cc664b1";
+      sha256 = "1vlasv4dgycydh5wx6jdcvz40zdv90zz1h7836z7lhsi2ymvii26";
     };
   }
   {
@@ -14,8 +14,8 @@
     fetch = {
       type = "git";
       url = "https://github.com/alecthomas/units";
-      rev = "2efee857e7cfd4f3d0138cc3cbb1b4966962b93a";
-      sha256 = "1j65b91qb9sbrml9cpabfrcf07wmgzzghrl7809hjjhrmbzri5bl";
+      rev = "f65c72e2690dc4b403c8bd637baf4611cd4c069b";
+      sha256 = "04jyqm7m3m01ppfy1f9xk4qvrwvs78q9zml6llyf2b3v5k6b2bbc";
     };
   }
   {
@@ -77,8 +77,8 @@
     fetch = {
       type = "git";
       url = "https://go.googlesource.com/image";
-      rev = "7e034cad644213bc79b336b52fce73624259aeca";
-      sha256 = "04n4yi0p2yjv8sr9dmnzwc2k6hvzzvl6jdq2xd043kvjwzk583va";
+      rev = "e7c1f5e7dbb87d8921928a6d9fc52fb31ce73b24";
+      sha256 = "0czp897aicqw1dgybj0hc2zzwb20rhqkdqm7siqci3yk7yk9cymf";
     };
   }
   {
@@ -86,8 +86,8 @@
     fetch = {
       type = "git";
       url = "https://go.googlesource.com/net";
-      rev = "3b0461eec859c4b73bb64fdc8285971fd33e3938";
-      sha256 = "0l00c8l0a8xnv6qdpwfzxxsr58jggacgzdrwiprrfx2xqm37b6d5";
+      rev = "daa7c04131f568e31c51927b359a2d197a357058";
+      sha256 = "17gbfvb5iqyayzw0zd6q218zsbf7x74rflvn18wkxvsw95n1y54h";
     };
   }
   {
@@ -95,8 +95,8 @@
     fetch = {
       type = "git";
       url = "https://go.googlesource.com/text";
-      rev = "342b2e1fbaa52c93f31447ad2c6abc048c63e475";
-      sha256 = "0flv9idw0jm5nm8lx25xqanbkqgfiym6619w575p7nrdh0riqwqh";
+      rev = "4b67af870c6ffd08258ef1202f371aebccaf7b68";
+      sha256 = "01mhy1xs2dh18kp6wdk1xnb34lbzv2qkvdwj7w5ha2qgm5rrm4ik";
     };
   }
   {

pkgs/desktops/deepin/dde-dock/default.nix

@@ -7,13 +7,13 @@
 let
 unwrapped = mkDerivation rec {
   pname = "dde-dock";
-  version = "4.10.3";
+  version = "5.0.0";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "17iy78r0frpv42g521igfdcgdklbifzig1wzxq2nl14fq0bgxg4v";
+    sha256 = "12dshsqhzajnxm7r53qg0c84b6xlj313qnssnx2m25z4jdp5i7pr";
   };
 
   nativeBuildInputs = [

pkgs/desktops/deepin/dde-file-manager/default.nix

@@ -1,22 +1,23 @@
-{ stdenv, mkDerivation, fetchFromGitHub, pkgconfig, avfs, dde-daemon, dde-dock,
-  dde-polkit-agent, dde-qt-dbus-factory, deepin, deepin-anything,
-  deepin-desktop-schemas, deepin-gettext-tools, deepin-movie-reborn,
-  deepin-shortcut-viewer, deepin-terminal, dtkcore, dtkwidget,
-  ffmpegthumbnailer, file, glib, gnugrep, gsettings-qt, gvfs,
-  jemalloc, kcodecs, libX11, libsecret, polkit, polkit-qt, poppler,
-  procps, qmake, qt5integration, qtmultimedia, qtsvg, qttools,
-  qtx11extras, runtimeShell, samba, shadow, taglib, udisks2-qt5,
-  xdg-user-dirs, xorg, zlib, wrapGAppsHook }:
+{ stdenv, mkDerivation, fetchFromGitHub, pkgconfig, avfs, dde-daemon,
+  dde-dock, dde-polkit-agent, dde-qt-dbus-factory, deepin,
+  deepin-anything, deepin-desktop-schemas, deepin-gettext-tools,
+  deepin-movie-reborn, deepin-shortcut-viewer, deepin-terminal,
+  disomaster, dtkcore, dtkwidget, ffmpegthumbnailer, file, glib,
+  gnugrep, gsettings-qt, gvfs, jemalloc, kcodecs, libX11, libsecret,
+  polkit, polkit-qt, poppler, procps, qmake, qt5integration,
+  qtmultimedia, qtsvg, qttools, qtx11extras, runtimeShell, samba,
+  shadow, taglib, udisks2-qt5, xdg-user-dirs, xorg, zlib,
+  wrapGAppsHook }:
 
 mkDerivation rec {
   pname = "dde-file-manager";
-  version = "4.8.6.4";
+  version = "5.0.0";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "1m0ykw5a91rm5xcah8bzk21xsambqvncj8104ihdhf9h0z9kdmm2";
+    sha256 = "0n2nl09anqdq0n5yn688n385rn81lcpybs0sa8m311k3k9ndkkyr";
   };
 
   nativeBuildInputs = [
@@ -39,6 +40,7 @@ mkDerivation rec {
     deepin-movie-reborn.dev
     deepin-shortcut-viewer
     deepin-terminal
+    disomaster
     dtkcore
     dtkwidget
     ffmpegthumbnailer

pkgs/desktops/deepin/dde-launcher/default.nix

@@ -5,13 +5,13 @@
 
 mkDerivation rec {
   pname = "dde-launcher";
-  version = "4.6.13";
+  version = "5.0.0";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "1lwwn2qjbd4i7wx18mi8n7hzdh832i3kdadrivr10sbafdank7ky";
+    sha256 = "0zh6bb0r3pgjrnw9rba46ghdzza1ka1mv7r1znf8gw24wsjgjcpn";
   };
 
   nativeBuildInputs = [

pkgs/desktops/deepin/dde-network-utils/default.nix

@@ -3,13 +3,13 @@
 
 mkDerivation rec {
   pname = "dde-network-utils";
-  version = "0.1.4";
+  version = "5.0.1";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "0nj9lf455lf2hyqv6xwhm4vrr825ldbl83azzrrzqs6p781x65i1";
+    sha256 = "0670kfnkplf7skkd1ql6y9x15kmrcbdv1005qwkg4vn8hic6s0z3";
   };
 
   nativeBuildInputs = [

pkgs/desktops/deepin/dde-polkit-agent/default.nix

@@ -3,13 +3,13 @@
 
 mkDerivation rec {
   pname = "dde-polkit-agent";
-  version = "0.2.10";
+  version = "5.0.0";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "0syg121slpd6d9xpifgcf85lg9ca0k96cl1g3rjvsmczs2d2ffgf";
+    sha256 = "00p8syx6rfwhq7wdsk37hm9mvwd0kwj9h0s39hii892h1psd84q9";
   };
 
   nativeBuildInputs = [

pkgs/desktops/deepin/dde-qt-dbus-factory/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "dde-qt-dbus-factory";
-  version = "1.1.5";
+  version = "5.0.1";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "1jzfblsmnfpgym95mmbd8mjkk8wqqfb0kz6n6fy742hmqlzrpsj7";
+    sha256 = "1wbh4jgvy3c09ivy0vvfk0azkg4d2sv37y23c9rq49jb3sakcjgm";
   };
 
   nativeBuildInputs = [

pkgs/desktops/deepin/dde-session-ui/default.nix

@@ -7,13 +7,13 @@
 
 mkDerivation rec {
   pname = "dde-session-ui";
-  version = "4.9.12";
+  version = "5.0.0";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "00i45xv87wx9cww1d445lg6zjbhda5kki8nhsaav8gf2d4cmwzf4";
+    sha256 = "1gy9nlpkr9ayrs1z2dvd7h0dqlw6fq2m66d9cs48qyfkr6c8l9jj";
   };
 
   nativeBuildInputs = [
@@ -89,8 +89,8 @@ mkDerivation rec {
     substituteInPlace lightdm-deepin-greeter/scripts/lightdm-deepin-greeter --replace "/usr/bin/lightdm-deepin-greeter" "$out/bin/lightdm-deepin-greeter"
     substituteInPlace session-ui-guardien/guardien.cpp --replace "dde-lock" "$out/bin/dde-lock"
     substituteInPlace session-ui-guardien/guardien.cpp --replace "dde-shutdown" "$out/bin/dde-shutdown"
-    substituteInPlace session-widgets/lockworker.cpp --replace "dde-switchtogreeter" "$out/bin/dde-switchtogreeter"
-    substituteInPlace session-widgets/lockworker.cpp --replace "which" "${which}/bin/which"
+    substituteInPlace dde-lock/lockworker.cpp --replace "dde-switchtogreeter" "$out/bin/dde-switchtogreeter"
+    substituteInPlace dde-lock/lockworker.cpp --replace "which" "${which}/bin/which"
     substituteInPlace session-widgets/userinfo.cpp --replace "/usr/share/wallpapers/deepin" "${deepin-wallpapers}/share/wallpapers/deepin"
     substituteInPlace widgets/fullscreenbackground.cpp --replace "/usr/share/wallpapers/deepin" "${deepin-wallpapers}/share/wallpapers/deepin"
     substituteInPlace widgets/kblayoutwidget.cpp --replace "setxkbmap" "${setxkbmap}/bin/setxkbmap"

pkgs/desktops/deepin/deepin-anything/default.nix

@@ -3,7 +3,7 @@
 
 mkDerivation rec {
   pname = "deepin-anything";
-  version = "0.1.0";
+  version = "5.0.1";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";

pkgs/desktops/deepin/deepin-calculator/default.nix

@@ -3,13 +3,13 @@
 
 mkDerivation rec {
   pname = "deepin-calculator";
-  version = "1.0.11";
+  version = "5.0.1";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "10bfq0h8v0a8i46gcbsy79l194g8sc0ysg289ndrra209fhwlidq";
+    sha256 = "0f26y7b3giybybhvlzbnwcw8kidzvhq66h0c15n9ww81gnlqf7v5";
   };
 
   nativeBuildInputs = [

pkgs/desktops/deepin/deepin-desktop-base/default.nix

@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   pname = "deepin-desktop-base";
-  version = "2019.06.19";
+  version = "2019.07.10";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "1r158x4z4qalv4q1ni3aln05krdzblvr7y6wyciwl7cr5ag1i1jy";
+    sha256 = "0rs7bjy35k5gc5nbba1cijhdz16zny30lgmcf2ckx1pkdszk2vra";
   };
 
   nativeBuildInputs = [ deepin.setupHook ];

pkgs/desktops/deepin/deepin-desktop-schemas/default.nix

@@ -3,13 +3,13 @@
 
 stdenv.mkDerivation rec {
   pname = "deepin-desktop-schemas";
-  version = "3.13.6";
+  version = "3.13.9";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "03jqb47kjyb9b43m2yincfjn2i43ma1pn1hddyicrrpg937caa81";
+    sha256 = "1c69j6s7561zb1hrd1j3ihji1nvpgfzfgnp6svsv8jd8dg8vs8l1";
   };
 
   nativeBuildInputs = [

pkgs/desktops/deepin/deepin-image-viewer/default.nix

@@ -5,13 +5,13 @@
 
 mkDerivation rec {
   pname = "deepin-image-viewer";
-  version = "1.3.17";
+  version = "5.0.0";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "0hz4f1kqcycyvggwfzpkblhhha87rqd427hq0mf31jfh5x17ymnh";
+    sha256 = "01524hfdy3wvdf07n9b3qb8jdpxzg2hwjpl4gxvr68qws5nbnb3c";
   };
 
   nativeBuildInputs = [

pkgs/desktops/deepin/deepin-movie-reborn/default.nix

@@ -1,16 +1,16 @@
-{ stdenv, mkDerivation, fetchFromGitHub, cmake, pkgconfig, qttools, qtx11extras,
+{ stdenv, mkDerivation, fetchFromGitHub, fetchpatch, cmake, pkgconfig, qttools, qtx11extras,
   dtkcore, dtkwidget, ffmpeg, ffmpegthumbnailer, mpv, pulseaudio,
   libdvdnav, libdvdread, xorg, deepin }:
 
 mkDerivation rec {
   pname = "deepin-movie-reborn";
-  version = "3.2.24";
+  version = "5.0.0";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "16mxym7dm6qk90q2w7xqm62047rq0lirrjmnnpaxshzaww9gngkh";
+    sha256 = "0cly8q0514a58s3h3wsvx9yxar7flz6i2q8xkrkfjias22b3z7b0";
   };
 
   outputs = [ "out" "dev" ];
@@ -19,6 +19,7 @@ mkDerivation rec {
     cmake
     pkgconfig
     qttools
+    deepin.setupHook
   ];
 
   buildInputs = [
@@ -37,11 +38,24 @@ mkDerivation rec {
     xorg.xcbproto
   ];
 
+  patches = [
+    # fix: build failed if cannot find dtk-settings tool
+    (fetchpatch {
+      url = "https://github.com/linuxdeepin/deepin-movie-reborn/commit/fbb307b.patch";
+      sha256 = "0915za0khki0729rvcfpxkh6vxhqwc47cgcmjc90kfq1004221vx";
+    })
+  ];
+
   NIX_LDFLAGS = "-ldvdnav";
 
+
   postPatch = ''
-    sed -i src/CMakeLists.txt -e "s,/usr/lib/dtk2,${dtkcore}/lib/dtk2,"
+    searchHardCodedPaths  # debugging
+
     sed -i src/libdmr/libdmr.pc.in -e "s,/usr,$out," -e 's,libdir=''${prefix}/,libdir=,'
+
+    substituteInPlace src/deepin-movie.desktop \
+      --replace "Exec=deepin-movie" "Exec=$out/bin/deepin-movie"
   '';
 
   passthru.updateScript = deepin.updateScript { inherit ;name = "${pname}-${version}"; };

pkgs/desktops/deepin/deepin-screenshot/default.nix

@@ -4,13 +4,13 @@
 
 mkDerivation rec {
   pname = "deepin-screenshot";
-  version = "4.2.1";
+  version = "5.0.0";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "16wy1ywp4lm7fg488laqxgxpir745rbpj9z410r6x7krpgjds189";
+    sha256 = "0h1kcf9i8q6rz4jhym3yf84zr6svzff0hh9sl7b24sflzkxx6zwk";
   };
 
   nativeBuildInputs = [

pkgs/desktops/deepin/deepin-shortcut-viewer/default.nix

@@ -3,7 +3,7 @@
 
 mkDerivation rec {
   pname = "deepin-shortcut-viewer";
-  version = "1.3.5";
+  version = "5.0.0";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";