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snakemake: 5.4.4 -> 5.7.4 (#72929) 

(#72929)
This commit is contained in:
Dmitry Kalinkin 2019-11-12 18:46:56 -05:00 committed by Renaud
parent 6e4a22449d
commit 93ee8095b0
2 changed files with 8 additions and 10 deletions
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16
pkgs/applications/science/misc/snakemake/default.nix
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@ -1,28 +1,26 @@
{ { stdenv, python3Packages }:
stdenv
, python
}:
python.buildPythonPackage rec { python3Packages.buildPythonApplication rec {
pname = "snakemake"; pname = "snakemake";
version = "5.4.4"; version = "5.7.4";
propagatedBuildInputs = with python; [ propagatedBuildInputs = with python3Packages; [
appdirs appdirs
ConfigArgParse ConfigArgParse
datrie datrie
docutils docutils
GitPython GitPython
jsonschema jsonschema
psutil
pyyaml pyyaml
ratelimiter ratelimiter
requests requests
wrapt wrapt
]; ];
src = python.fetchPypi { src = python3Packages.fetchPypi {
inherit pname version; inherit pname version;
sha256 = "157323e0e1be34302edbbf399b2acbe25a4291bceffd47a0469963a970c9375f"; sha256 = "11f2f00c505d928b91332056667d49c96ed1694bf78e798ce27613948d44a2a2";
}; };
doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json doCheck = false; # Tests depend on Google Cloud credentials at ${HOME}/gcloud-service-key.json

2
pkgs/top-level/all-packages.nix
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@ -10339,7 +10339,7 @@ in
smc = callPackage ../tools/misc/smc { }; smc = callPackage ../tools/misc/smc { };
snakemake = callPackage ../applications/science/misc/snakemake { python = python3Packages; }; snakemake = callPackage ../applications/science/misc/snakemake { };
snore = callPackage ../tools/misc/snore { }; snore = callPackage ../tools/misc/snore { };